Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 19 of 93
Found at i:2098033 original size:874 final size:875
Alignment explanation
Indices: 2096341--2100488 Score: 5290
Period size: 874 Copynumber: 4.8 Consensus size: 875
2096331 TTTTTGCCCG
* * *
2096341 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTGTATCGATCAATGGC
1 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGC
* * * *** * ** * *
2096406 TTGCGCATCCCGCCTCTCTGGCTGGCGTAGTACCTATCTGCCCGCCTGCTCATTTTGTCGGTTGG
66 TTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
** * * * * *
2096471 CTTAGGTGTATGGAGTTCATTCCCAGTCTAAGATTGAACT-GGA-TCGAGGGTTGCAATAGCAGG
131 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTCAGACT-GAGGGTTGCAGTAGCAGG
* * * * * * **
2096534 ATCGATGGCACACAAAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCTTGCCCCTCTGGCTGGC
195 ATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGC
*
2096599 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
260 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * ** * * * * *
2096664 CTGATCGAACCGAGGGTTATGGGTTCACATGCTGGGCTC-AAC-TATGCTAGTGTCGTATTTTTT
325 CGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTT
* * * **
2096727 TTCACTCGGGGCATCATCGTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCAGA
390 TTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GA
* *
2096792 -GATTGGGGGG-GCCGAGGGGTGTGCGCACATGATGTGCAATGGGTAG-TGGTACTTGGCCCTTA
454 CGATTGGGGGGTG--GGGGGGTGTGCGCACATGATGTGCGATGGGT-GCTGGTACTTGGCCCTTA
* *
2096854 TATTGGTCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
516 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
2096919 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAGTGGCCACA
581 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
2096984 AAATCCTGTACACTTCGCGTTTTTGGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
646 AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * *
2097049 ATGTCTACCAAGTTTGGGGGCAAAAATCCTTCTAAAAAAATTTTAAAAAAATCTCGAACCGCAAA
711 ACGTCTACCAAGTTT-GGGGCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAA
* * *
2097114 AATTTTCAAAAATCGTCAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTT
775 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTT
*
2097179 AAGCGACCATTGTATGAATTTACATGCCATAAAAAT
840 AAGCGACCATTGTATGAATTTACAAGCCATAAAAAT
*
2097215 GGCATTGGAATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGC
1 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGC
* * * * *
2097280 TTGCTCATCCCGCCTCTCTGGCCGGTGTAGCGCCCACCCGCCCGCGCACTCGTTTCGTCGGCTGG
66 TTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
* * * * * *
2097345 CTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGAAAC-AAGGGTTGCGGTAGTAGGA
131 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTCAGACTGAGGGTTGCAGTAGCAGGA
* ** * *
2097409 TCGGTGGCATGCAGAGGGGGACCCGATCGAACCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCT
196 TCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCT
* * *
2097474 GAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCTAGTCTAAGATC
261 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
2097539 CGACCGGACCAAGGGTTACGGGTGCACATGCTGGG-TCGGGTATGTGCTGGTGCCGTATTTTTTT
326 GGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTTT
* * * ** *
2097603 TCGCCCGTGGCACTATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACA
391 TCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
2097668 ATTGGGGGGTGGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
456 ATTGGGGGGTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
2097733 GCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
521 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
2097798 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCACAAAATC
586 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * **
2097863 CTGTACACTTTGAGTTTTTAGATGAATTTTTTTGTGCATGGTAAAAAAAATACAAGGATCACGTC
651 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* * *
2097928 TACCAAGTTTAGGGGCAAAACTCCTTCTGGAAAAATTTTAAAAAAATTTGGAACCGTAAAAAGTT
716 TACCAAGTTT-GGGGCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTT
* * *
2097993 TCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGCA
780 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGCG
**
2098058 ACCATTGTATGAATTTACAAGAAATAAAAAT
845 ACCATTGTATGAATTTACAAGCCATAAAAAT
*
2098089 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCAATCCACGGC
1 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGC
* * * * * ** *
2098154 TTGCGCATCCCGCCTCTCTGGCC-TTCATAGTGCCCGCCTGCCCGCCCATTCATTTTTTCAGTTG
66 TTGCGCATCCCGCCTCTCTGGCCGGT-GTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTG
* * ** ** * ** * *
2098218 GCTTAGGCATACGGAGTTCATTCCCAGTGTACGA-TCAAACCAGACTGAGGATTGTGGCAACAGG
130 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTCAGACTGAGGGTTGCAGTAGCAGG
* * * * * *
2098282 ATCGATAGCTCACAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCTACCCCTCTGGCCGGC
195 ATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGC
* * *
2098347 TGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAATAT
260 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
2098412 CGGATCGGACTGAGGGTTGCGGGTGTACATGCTAGTCTCGAGCATGTGCTGGGGCCGTATTTTTT
325 CGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTT
* * * * *
2098477 TTTGCCCGGGGCACCATCGTTGCAACATCGGCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
390 TTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
** * *
2098542 GATTAGGGTGGGCCAGGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCGTTAT
455 GATT-GGG-GGG-TGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
2098607 ATTGGCCCCTTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
517 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
2098672 ACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAA
582 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * * * *
2098737 AATCCTGTACACTTTGACTTTTTGGCTGAATTTTTTTATGCAAGCCAAAAAAAATAAAAGGATCA
647 AATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* *
2098802 CGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAAAT-TCCAAACCGTAAA
712 CGTCTACCAAGTTTGGGG-CAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT-CGAACCGTAAA
* * *
2098866 AAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
775 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTT
* *
2098931 AAGAGACCATTGTATGAATTTACAAGTCATAAAAAT
840 AAGCGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
2098967 TGCATTGGCATGGCAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
1 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGC
* * * *
2099032 TTGCACATCCCGCCTCTCTGGCCGGTGTAGTGCCTGCCCACCCGCCCGCTCGTTTCAG-CGGTTG
66 TTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTC-GTCGGTTG
* * * *
2099096 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGA-CCAGACTGAGGGTTACAGCAGCAGG
130 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTCAGACTGAGGGTTGCAGTAGCAGG
* * * ** * * * *
2099160 ATCGGTAGCACGCTGAAGGGGACCCGGTCGATCCCCAGCTTGCGAATGCTGCCCCTCTGGGC-GA
195 ATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAG-
* * * * *
2099224 CTAAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGA
259 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * * *
2099289 TCGGACCCAATCAAGGGTTGCCGGTGCACATGTTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
324 TCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTT
* *
2099354 TTTCGCCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
389 TTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* ** * *
2099419 CAATTGGGGGGTCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGGACTTAGCCCTTATAT
454 CGATTGGGGGGTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
2099484 TGGCCCCC-ATCCCTCATCAAACCTCAAGAACACACACCACCTTAAAGAGCATTTGAGATTTTAC
519 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
2099548 AGGTTTGCTGCCAGAAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC-AAA
584 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
2099612 TGCCTATACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCA-GCCCAGAAAAGTACAAGGAT-AT
649 T-CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * * *
2099674 GTCTA-CAAGTTT-GGCCAAAAAATTCATTTTTG-AAAAA-TTT-AAAAAATCT-GAACCATAAA
713 GTCTACCAAGTTTGGGGC--AAAACTC-CTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAA
*
2099733 CAA-TTT--GAAATCATGAAAAATAGAAAACGAGTCG-CCTG-CATG-AA-TTCACATGAA-GCT
775 -AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCT
* *
2099790 TAAGGGACCATTAGTACGAATTTACAAGCCCATAAAAATT
839 TAAGCGACCATT-GTATGAATTTACAAG-CCATAAAAA-T
* * * * *
2099830 GGCATTGGCAAGGCAGAAATATTGAAGATATGCCTAAACCCACCTGCCACCCTACCGATCCACGG
1 GGCATTGGCATGGCAGAAATA-TGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGG
* * * ** * *
2099895 CTTGCGCACCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCGCCC-TTCAGCTTGTTTCGTCGATT
65 CTTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCA-CTCGTTTCGTCGGTT
* * *
2099959 GGCTTAGGCATGCGGAGTTCATTCCTAGTCTAAGATTGGATT-AGACTGAGGGTTGCAGTAACAG
129 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTCAGACTGAGGGTTGCAGTAGCAG
* * * ** * * *
2100023 GATCAGCAGCACACTGAGGGGGACCCGACCGATCCATGACTTACGCATCCTACCCCTCTGGCCAG
194 GATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAG
* * * * *
2100088 CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCACTCCAAGA
259 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
2100153 TCGGGCCGGACCGATGGTTGCAGGTGCACACGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
324 TCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTT
* * * * *
2100218 TTTTGCACGGGGCACCATCGTCGGAGCATCGTCGAAGAACTTGACCGACGGCATCGGGGTTCCGA
389 TTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * * *
2100283 CGACTGGGGGGTCTGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCCTATA
454 CGATTGGGGGGT-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* **
2100348 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCTATTAAAGAGCATTTGAGATTTTA
518 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
2100413 CAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAA
583 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
2100478 ATCCTATACAC
648 ATCCTGTACAC
2100489 GGATCACGTC
Statistics
Matches: 2841, Mismatches: 397, Indels: 80
0.86 0.12 0.02
Matches are distributed among these distances:
860 14 0.00
861 24 0.01
862 10 0.00
863 26 0.01
864 373 0.13
865 80 0.03
866 116 0.04
867 15 0.01
868 10 0.00
869 6 0.00
870 18 0.01
871 11 0.00
872 16 0.01
873 23 0.01
874 1108 0.39
875 218 0.08
876 7 0.00
877 12 0.00
878 751 0.26
879 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGC
TTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTCAGACTGAGGGTTGCAGTAGCAGGA
TCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTTT
TCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
ATTGGGGGGTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGCGA
CCATTGTATGAATTTACAAGCCATAAAAAT
Found at i:2103017 original size:716 final size:715
Alignment explanation
Indices: 2101671--2103079 Score: 2071
Period size: 716 Copynumber: 2.0 Consensus size: 715
2101661 CGAGGGTTAC
* * **
2101671 GGGTGCACATGCTGGGCATGGGCATGTGCTGCTGCCGCATTTTTTTTTCGCTCGGGGCACCATCG
1 GGGTGCACATGCTGGGCATGGGCATGTGCTGCTGCCACATTTTTTTTTCACTCGGACCACCATCG
* * *
2101736 CTGGAGCATCGCTGGAAAACCTGACTGGTGACATTGGGGTTCCAACAATTGGGGGGGCGGGGGGT
66 CCGGAGCATCGCTGGAAAACCTGACTGGCGACATTGGGGTTCCAACAATTGGGGGGGCGGGAGGT
* *
2101801 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
131 GCGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
2101866 AACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAT
196 AACCTCGAGAACTCACACCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCACTAGCCAT
2101931 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
261 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
* *
2101996 ACCTGAATTCTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
326 ACCTGAATTCTTTTATGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
2102061 ACTCCTTCTGAAAAAATTTTTAAAAAATCCCGATCCGTAAAAAGTCTCAAAAATCGTGAAAAATA
391 ACTCCTTCTGAAAAAA-TTTGAAAAAATCCCGAACCATAAAAAGTCTCAAAAATCGTGAAAAACA
* * * *
2102126 TAAAACAAGTCGTTTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTTTGAATTTACA
455 GAAAACAAGTCGTCTTGCCATGAAACCTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * **
2102191 AGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGTGCGTAAACTCACCTACTTCCCTA
520 AGCCATAAAAATGGCATTGGCACGACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *** *
2102256 TCGATCCACGACGTGTGCATCCAACCTCTCTGGCCGACGTAGTGCCCGCCCTTTCGCCCGCTCAT
585 TCGATCCACGACGTGCGCATCCAACCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCAT
* * *
2102321 TTCATCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAAAGGGATCGAAGGTTG
650 TTCATCGATTGGCTTACGCATAAGGAATTCATTCCCAGTCTAAGATCAAAAGGGATCGAAGGTTG
2102386 T
715 T
* *
2102387 GGGTGCACATGCTGGGC-TCGGGCATGTGCTGGTGTCACA-TTTTTTTTCACTC-GACCACCATC
1 GGGTGCACATGCTGGGCAT-GGGCATGTGCTGCTGCCACATTTTTTTTTCACTCGGACCACCATC
* * *
2102449 GCCGGAGCATCG-TCGGAGAAA-CTGACTGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGAG
65 GCCGGAGCATCGCT-GGA-AAACCTGACTGGCGACATTGGGGTTCCAACAATTGGGGGGG-CG-G
*
2102512 GAGGTGCGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCT
126 GAGGTGCGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
2102577 CATCAAACCTCGAGAACTCGCACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCACT
191 CATCAAACCTCGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCACT
* * *
2102642 AGCCATTGAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGA
255 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
* * *
2102707 GTTTTTAGCTGAACTT-TTTTGTGCATGCCCACAAAAATACAAAGATCACGTCTACCAAGTTTGG
320 GTTTTTACCTGAA-TTCTTTTATGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGG
* *
2102771 GGTCAAAACTCCTTCTGAAAAAA-TTGAAAAATATCTCC-AACCATAAAAAGTTTCAAAAATCGT
384 GGCCAAAACTCCTTCTGAAAAAATTTGAAAAA-ATC-CCGAACCATAAAAAGTCTCAAAAATCGT
* * *
2102834 GAGAAACAGAGAACAAGTCGTCTTGCCATGAAACCTCACTTGAAGGCTTAAGGGACCATTGTATG
447 GAAAAACAGAAAACAAGTCGTCTTGCCATGAAACCTCACATGAAGGCTTAAGGGACCATTGTATG
* *
2102899 ACA-TTACAAGCCATAAAATTGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCT
512 A-ATTTACAAGCCATAAAAATGGCATTGGCACGACAGAAATATGAAGATGTGCCTAAACCCACCT
* ** * **
2102963 ACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCA
576 ACCACCCTATCGATCCACGACGTGCGCATCCAACCTCTCTGGCCGACGTAGTGCCCGCCCGCCCA
* * ** *
2103028 CCTGCTCCTTTTGTCGGTTGGCTTACGCATAAGGAATTCATTCCCAGTCTAA
641 CCCGCTCATTTCATCGATTGGCTTACGCATAAGGAATTCATTCCCAGTCTAA
2103080 TATTGGACCA
Statistics
Matches: 618, Mismatches: 65, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
713 1 0.00
714 55 0.09
715 25 0.04
716 352 0.57
717 183 0.30
718 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (715 bp):
GGGTGCACATGCTGGGCATGGGCATGTGCTGCTGCCACATTTTTTTTTCACTCGGACCACCATCG
CCGGAGCATCGCTGGAAAACCTGACTGGCGACATTGGGGTTCCAACAATTGGGGGGGCGGGAGGT
GCGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCACTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
ACCTGAATTCTTTTATGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCTGAAAAAATTTGAAAAAATCCCGAACCATAAAAAGTCTCAAAAATCGTGAAAAACAG
AAAACAAGTCGTCTTGCCATGAAACCTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGACGTGCGCATCCAACCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATT
TCATCGATTGGCTTACGCATAAGGAATTCATTCCCAGTCTAAGATCAAAAGGGATCGAAGGTTGT
Found at i:2103339 original size:11 final size:11
Alignment explanation
Indices: 2103320--2103352 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
2103310 CTCGGGGCAC
*
2103320 CATCATCGGAG
1 CATCGTCGGAG
2103331 CATCGTCGGAG
1 CATCGTCGGAG
2103342 CATCGTCGGAG
1 CATCGTCGGAG
2103353 AACCTGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:2105012 original size:23 final size:23
Alignment explanation
Indices: 2104982--2105026 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
2104972 TAGGCATACG
2104982 GAGTTCATTCCCAGTCTAAGATC
1 GAGTTCATTCCCAGTCTAAGATC
2105005 GAGTTCATTCCCAGTCTAAGAT
1 GAGTTCATTCCCAGTCTAAGAT
2105027 TGGACCAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (23 bp):
GAGTTCATTCCCAGTCTAAGATC
Found at i:2106455 original size:140 final size:138
Alignment explanation
Indices: 2106205--2106488 Score: 428
Period size: 140 Copynumber: 2.0 Consensus size: 138
2106195 AAATGGTCAC
* *
2106205 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAAATACAGGGAT
1 AAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGCGCATGCCAAAAAAAATACAAGGAT
* *
2106270 CACGTCTACCAAGTTTGGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAAAT-CTCGAACCGT
66 CACGTCTACCAAGTTTCGGGGCCAAAAATCCTACTAAAAAAATTTT--AAAAATCCT-GAACCGT
2106334 AAAAAGTTTCA
128 AAAAAGTTTCA
* * *
2106345 AAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATGCCCACAAAAATACAAGGAT
1 AAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGCGCATGCCAAAAAAAATACAAGGAT
* *
2106410 CACGTCTACCAAG-TTCGTGGCCAAAACTCCTACTGAAAAAAATTTTAAAAATCCTGAACCGTAA
66 CACGTCTACCAAGTTTCGGGGCCAAAAATCCTACT-AAAAAAATTTTAAAAATCCTGAACCGTAA
*
2106474 AAAGTTTTA
130 AAAGTTTCA
2106483 AAAATC
1 AAAATC
2106489 GAGAAAAATA
Statistics
Matches: 132, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
138 29 0.22
139 19 0.14
140 84 0.64
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.29
Consensus pattern (138 bp):
AAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGCGCATGCCAAAAAAAATACAAGGAT
CACGTCTACCAAGTTTCGGGGCCAAAAATCCTACTAAAAAAATTTTAAAAATCCTGAACCGTAAA
AAGTTTCA
Found at i:2107782 original size:25 final size:26
Alignment explanation
Indices: 2107731--2107782 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2107721 GTTGACTTAG
2107731 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2107757 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2107782 G
1 G
2107783 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2108664 original size:26 final size:26
Alignment explanation
Indices: 2108628--2108680 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2108618 GTTGACTTAG
2108628 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2108654 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2108680 G
1 G
2108681 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2108723 original size:898 final size:890
Alignment explanation
Indices: 2106771--2111744 Score: 5687
Period size: 898 Copynumber: 5.7 Consensus size: 890
2106761 GCAGCAAGAT
* * *
2106771 CGATCCCCAGCATGCGCATCCTA-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTCTGTGG
1 CGATCCCCGGCTTACGCATCC-AGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC-GTGG
* *
2106834 GTTGACTTAGGCATACAGAGTTCATTCCCATTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAT
64 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
2106899 CGGACCAGA-CTGAGGGTTGCAGGTGCACATAC-TGGTTTCGGGCATGCGCTGGTGCCGCATTTC
129 CGGACCGGATC-GAGGGTTGCAGGTGCACATGCTTGG-CTC-GGCATGTGCTGGTGCCGCATTTT
* * * * * *
2106962 TTTTCACCCGGGCCACCAT--CG----CCGAAGAACCTGATCGACGACATTGGGGTTCCGACGAT
191 TTTTCGCCCGGGGCACCATCACGCATCCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGAT
* * * * **
2107021 TGGGGGGGCAGAGGGGTGAGCGCACATGATGTGTGATGGGTGCTACTACTTGGCCCTTATATTGG
256 T-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
2107086 CCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGG
320 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
2107151 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGTTCACAAAATCC
385 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
* * *
2107216 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAAAAAAAATACAAGGATCAGGTCT
450 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* *
2107281 ACGAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCCCAAACCATAAAAAGTTT
515 ACCAAGTTTGGGGCCAAAACTCC-TCTAAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTT
* *
2107346 CCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGA
579 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
* **
2107411 CCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATTTCAGAAATATGAAGATGTGCCTA
644 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTA
* ** *
2107476 AACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGCCTCTCCAGCCGGCGTAATGCTC
709 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGC-C
*
2107541 GCGTGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATC
773 -C--GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATC
* * * ** * *
2107606 AGACC-GTATCAAGGGTTGTGGTAGTTGGATCGATAGCACGCTGAGGGGGACCCGAC
835 AGACCAG-ACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCTGAGGGGGACCCGGC
* * * * * * * *
2107662 CGATTCTCGGCTTGCGCAT-CTGCCCCTCTAGCCGGCTGAGCGCCCGCA--CAC-TTTCATGAGT
1 CGATCCCCGGCTTACGCATCCAGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
2107723 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCA
66 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
2107787 GATCAGATCGAGGGTTGCAAGTGCACAT-TTTGGGCTCGGCCATGTGCTGGTGCTGCATTTTTTT
131 GACCGGATCGAGGGTTGCAGGTGCACATGCTT-GGCTCGG-CATGTGCTGGTGCCGCA-TTTTTT
*
2107851 TTCACCCGGGGCACCATCACTAGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGCTT-TGA
193 TTCGCCCGGGGCACCATCAC----GCATC-CCGGAGAACCTGACCGACGGCATTGGGG-TTCTGA
** * * *
2107915 CGATTGGGGGGTTGGGGGGCTGTGCGCACATGATGTGTGATTGGTACTGGTACTTGGCCCTTATA
252 CGATTGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * ** *
2107980 TTAGCCCCCTATCCCTCATGAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTT
316 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
2108045 TAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAA
381 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
2108110 ATCCTGTACACTTCGAGTTTTCAACTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCAC
446 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
2108175 GTCTGCCAAGTTTGGGGCAAAAACTCCTCCTAAAAAAATTTTTAAAAAATCCCGAACCATAAAAA
511 GTCTACCAAGTTTGGGGCCAAAACTCCT-CTAAAAAAATTTTAAAAAAATCCCGAACCATAAAAA
*
2108240 GTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
575 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
* *
2108305 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATT-GCACAGCA-ACAATTTGAAGATG
640 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGGCATAGCAGA-AATATGAAGATG
* * * *
2108368 TGCCTAAACCCACCTACCAGCCTATCGATCCATGGTTTGC-CATCCCGCCTCTCTGGCTGGCGTA
703 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* * * *
2108432 GTGCCCGCCCGCCCGCTCGTTTGGACGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGA
768 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGA
**** * * * * *
2108497 TCAGACCAGACCGAGGGTTGCAATAGCAAGATTGGTAGCACGTTGAGGGGGAGCTGGC
833 TCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCTGAGGGGGACCCGGC
* * * * * *
2108555 CGATCCCCGGCTTAAGCATCCAGCCCCTCTGGCCGACTGAGCACCCGCACGATCATTTTGTGGGT
1 CGATCCCCGGCTTACGCATCCAGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
2108620 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
2108685 GACCGGATCGAGGGTTGCGGGTGCAAATGCTTGGCTCGGCCATGTGCTGGTGCCACATTTTTTTT
131 GACCGGATCGAGGGTTGCAGGTGCACATGCTTGGCTCGG-CATGTGCTGGTGCCGCATTTTTTTT
** *
2108750 CGCATGGGGCACCAT--CG----CCGGAGAACCTAACCGACGGCATTGGGGTT-TCGACGATTGG
195 CGCCCGGGGCACCATCACGCATCCCGGAGAACCTGACCGACGGCATTGGGGTTCT-GACGATTGG
*
2108808 AGGGGCC-GGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
259 -GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
2108872 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
323 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
2108937 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACAATTTTTTCAAATGGTCACAAAATCTTGT
388 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
*
2109002 ACACTTC---------GC-G---TTTTTTGTGCATGCAAACAAAAATACAAGGATCACGTCTACC
453 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
2109054 AAGTTTGGCGTCAAAACTCCTATCGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAA
518 AAGTTTGGGGCCAAAACTCCTCT-AAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAA
2109119 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
582 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
* **
2109184 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTGGAAATATGAAGATGTGCCTAAAC
647 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAAC
* * * * * *
2109249 CCACCTACCACCCTATTGATCCACAGCTTGCGCATCCTGCCTCTTTGGCTGGCGTAGTGCCCACC
712 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG-CC-CG
* * *
2109314 CATCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
775 C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGA
* * * * * *
2109379 TCAGACCAAGGGTTGTGGCAACAGGATCGGCAGCATGCTGAGGGGGACCCGAC
838 CCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCTGAGGGGGACCCGGC
* * * * * * * * * *
2109432 CAATCCCTGACTTACGCATTCTG-CCCTCTAGCCGACTGAACGCCCGCACGCTTGTTTCATGGGT
1 CGATCCCCGGCTTACGCATCCAGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
2109496 TGAATTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
66 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
2109561 AACCGGATCGAGGGTTACGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTGTTTTT
131 GACCGGATCGAGGGTTGCAGGTGCACATGCTTGGCTCG-GCATGTGCTGGTGCCGCATTTTTTTT
* **
2109626 CGCCCGGGCCACCATCACG--T----GAGAACCTGACCGACGGCATTGGGGTTCTGGTGATTGGG
195 CGCCCGGGGCACCATCACGCATCCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATTGGG
*
2109685 GGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG-TAGGTACTTGGCCCTTAT-TTGGCCCC
260 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCC
* * * *
2109748 CTATGCCTCATCAAACCTCGAGAACTCACA-CCCTTTTAAGAGCATTTGAGATTTTACAGGTTTG
324 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
2109812 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCCTATG
389 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
** * **
2109877 CACTTCGAGTTTTTTTCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTATAATA
454 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * ** *
2109942 AGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTAAAAAAAAATCTCAAACTGTAAAAAGTTTTAA
519 AGTTTGGGGCCAAAACTCC-TCTAAAAAAATTT-TAAAAAAATCCCGAACCATAAAAAGTTTCAA
*
2110007 AAATC--G-----T-GAAAA--A-----------AAG-AA----A-ATGAAGGCTTAAGGGACCA
582 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
* * * * *
2110045 TTGCATGAATTTGCAAGCCATAAAATTGGCATTGGCATAGTAGAAATATAAAGATGTGCCTAAAC
647 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAAC
* * *
2110110 CCACCTACCACCCTATTGATCCACGGCTTGTGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCC
712 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG--
* *
2110175 CTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCAAGTCTAAGATCAGA
775 --CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGA
* *** * * *
2110240 CCGGACCGAGGGTTACAGCAGCAGGATCGGTAGCATGCTAAGGGGGACCCAGC
838 CCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCTGAGGGGGACCCGGC
** * *** *
2110293 CGATCCTTGGCTTGCGCAT-CATGCCCCTCTGGCCGGCTGAGCGATTGCACGCTCATTTCGTGGG
1 CGATCCCCGGCTTACGCATCCA-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*** *
2110357 TTGACTTAGTTGTAC-GAAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGAT
65 TTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
2110421 CGGATCGGACCGAGGGTTGTAGATGCACATGCTAGGCTCAAGAATGTGCTGGTGCCGCATTTTTT
129 CGGACCGGATCGAGGGTTGCAGGTGCACATGCTTGGCTC-GGCATGTGCTGGTGCCGCATTTTTT
* * * * * * * * *
2110486 TTCGCTCGAGCCACCATTGTCGAAGCATCGCCAGAGAGCCTGATCGACAGCATTGGGGTTCCGAC
193 TTCGCCCGGGGCACCA---TC-ACGCATC-CCGGAGAACCTGACCGACGGCATTGGGGTTCTGAC
2110551 GATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
253 GATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
** * *
2110616 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATGCCCCCTTAAAGAGCATTTAAGATTTTAT
317 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
2110681 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
382 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * * * *
2110746 TCCTATGCACTTTGAGTTTTTTGCTGAATTGTTTTGTGCATGCCCACAAAAATACAAGGATCATG
447 TCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
*
2110811 TCTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAAA-TTTAAAAAAATCCCGAACCATAAAAAG
512 TCTACCAAGTTTGGGGCCAAAACTCC-TCTAAAAAAATTTTAAAAAAATCCCGAACCATAAAAAG
* * *
2110875 TTTCAAAAATCATGAAAAATAGAGAACGAGTCATCTTGCCATCAAACTTCACATGAAGGCTTAAG
576 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
* *
2110940 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGGCAGAAATATGAAGATGTGC
641 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGC
* * * * * * *
2111005 CTAAACCCTCCTACTACCCTATCGATCCATGACTTGCACATCCCGCCTCTTTGGCCAGCGTAGTG
706 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG
* * * * *
2111070 CCCGTCTGCTCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCTAGCCTGAG
771 CCCG-C--C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAG
* * ** * **
2111135 AAT-AGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCTGAGGGTGACCTAGC
832 -ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCTGAGGGGGACCCGGC
* * * * * **
2111194 CGATCCCCCGCTTACGTATCCTGCCCCTCTGGTCGGTTGAGCGCTTGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTACGCATCCAGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
2111259 TGACTTATGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG----------GTC---GA---
66 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
2111304 -A-C---T-AAGGCTTGTAGGTGCACATGCTGGGCTCGGGCTTGTGCTGGTGCCGTATTTTTTTT
131 GACCGGATCGAGGGTTGCAGGTGCACATGCTTGGCTC-GGCATGTGCTGGTGCCGCATTTTTTTT
* * * *
2111363 CGCTCGGGGAACCAT--CG--T--CGAAGATCCT-A---AC--C-----GG--C-GAC-ATT---
195 CGCCCGGGGCACCATCACGCATCCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATTGGG
* **
2111404 ----C---GGGT-TAGCGCACATGATGTGTGATGGGTGCTACTACTTGGCCCTTATATTGGCCCC
260 GGGCCGGGGGGTGT-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
2111461 CTATCCCTCATCAAACCTCCAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
324 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
2111526 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCCTGTA
389 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
* * ** * * *
2111591 CACTTTGAGTTTTTGGCAAAATTTTGTTGTGCAGGCCAACAAAAATACAA-GAGCACGTCTACCA
454 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * *
2111655 AGTTTAGGGCGAAAACTACTTCTGAAAAAATTTTAAAAAAATCCCGAGCCGTAAAAAGTTTCAAA
519 AGTTTGGGGCCAAAACT-CCTCTAAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAA
* *
2111720 AATCGTGAAAAATAAAAAACGAGTC
583 AATCATGAAAAATAGAAAACGAGTC
2111745 ATAAAAATTG
Statistics
Matches: 3541, Mismatches: 421, Indels: 295
0.83 0.10 0.07
Matches are distributed among these distances:
837 38 0.01
838 272 0.08
841 1 0.00
849 3 0.00
850 3 0.00
851 1 0.00
853 2 0.00
858 1 0.00
859 1 0.00
860 5 0.00
861 247 0.07
862 154 0.04
863 2 0.00
864 7 0.00
865 2 0.00
866 4 0.00
867 3 0.00
868 1 0.00
869 1 0.00
871 4 0.00
872 241 0.07
873 56 0.02
874 184 0.05
875 140 0.04
876 425 0.12
877 114 0.03
878 3 0.00
879 1 0.00
880 6 0.00
881 2 0.00
882 4 0.00
883 1 0.00
884 4 0.00
885 179 0.05
886 97 0.03
887 148 0.04
888 38 0.01
889 1 0.00
890 26 0.01
891 16 0.00
893 112 0.03
894 26 0.01
895 3 0.00
896 4 0.00
897 115 0.03
898 522 0.15
899 8 0.00
900 3 0.00
901 306 0.09
902 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (890 bp):
CGATCCCCGGCTTACGCATCCAGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCGGATCGAGGGTTGCAGGTGCACATGCTTGGCTCGGCATGTGCTGGTGCCGCATTTTTTTTC
GCCCGGGGCACCATCACGCATCCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATTGGGG
GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTCTAAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCG
AGGGTTGTGGCAGCAGGATCGGTAGCACGCTGAGGGGGACCCGGC
Found at i:2109534 original size:26 final size:26
Alignment explanation
Indices: 2109504--2109556 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2109494 GTTGAATTAG
2109504 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2109530 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2109556 G
1 G
2109557 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2110405 original size:26 final size:26
Alignment explanation
Indices: 2110369--2110418 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2110359 GACTTAGTTG
2110369 TACGAAGTTCATTCCCAGTCTAAGCT
1 TACGAAGTTCATTCCCAGTCTAAGCT
*
2110395 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
2110419 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:2114678 original size:909 final size:876
Alignment explanation
Indices: 2111744--2117212 Score: 6011
Period size: 861 Copynumber: 6.2 Consensus size: 876
2111734 AAAAACGAGT
* * * *
2111744 CATAAAAATTGCATTGGCA-GGACAGAAATATGAAGATGTGCCTAAACGCGCCTACCACCCTATT
1 CATAAAAATGGCATTGGCATGG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * * *
2111808 GATCCATGGCTTGCGCATCCCGCCTCTTTCGCCGGCGTAGTGCCCGCCTGCCCACCCACTCATTT
65 GATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * *
2111873 CGTCGGTTGGCTTAGGCATATC-GAGTTCAATCCCAGTCTAAAATCAGACCGAAAT-GAGGGTT-
130 CGTCGGTTGGCTTAGGCATA-CGGAGTTCATTCCCAGTCTAAGATCGGACCG-AATCGAGGGTTA
* * * * * * *
2111935 -GTGCAACAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCTCGGCTTGCCCATCCT-GCC
193 CG-GCAGCAGGATCGGCAGCACGCTGAGGGGGACCC-ATCGACCCCCGACTTGCGCATCCTACCC
* * **
2111998 CTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCC
256 CTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * ** * * * *
2112063 CAGTCTAAG--AT-CAGACCA-GAT--CGATGGTTACGAGTACACATGCTGCGCTCGAGCTTGTG
321 CAATCTAAGATATAGAGACCACGATACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTG
** * * * **
2112122 CT-GTGCTGCATATTTTTTCGCTCGGAG-CACCAT---C---G---C-CGGAGAACCTGATCGAT
386 CTGGTGCCACATTTTTTTTCGCCCGG-GCCACCATCGCCGGAGCATCGCGGAGAACCTGACCGGC
* * ** *
2112175 GACATTGGGGTTTTGACGATTGGGGGGGCCGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTG
450 GGCATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
2112240 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACGCCCCCTTAAAG
515 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
2112305 AGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
580 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * * *
2112370 TTCAAATGGTCACAAAATCCTATGCACTTTGAGTTTTTTGCTGAATTGTTTTGTGCATGCCCACA
645 TTC-AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT-TTTTATGCATGCCAACA
* * *
2112435 AAAATACAAGCATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAAATTTAAAAAAAA
708 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT--AAAAAA
* * * * *
2112500 ATCCCGAGCC-TTAAAAGTTTCAAAAAATTCATGAAAAAT---AAACGAGTCATCCTTGCCATCC
771 AT-CCGAACCGTAAAAAGTTTC-AAAAA-TCATGAAAAATAGAAAATGAGTCGT-CTTGCCAT-G
* *
2112561 AAACTTCACAATTCAAGG-TTAAGGG-CC-TT-TTTGGAATTTACAAAGC
831 AAACTTCAC-A-TGAAGGCTTAAGGGACCATTGTAT-GAATTTAC-AAGC
*
2112607 GCAATTAAAAATGG-ATTGGCAT-GCAGAAATATCCAAGATGTGCCTAAACCCACCTACCA-CCT
1 -C-A-TAAAAATGGCATTGGCATGGCAGAAATAT-GAAGATGTGCCTAAACCCACCTACCACCCT
* * * * ** *
2112669 ATCGAT-CACGGCTTGCGACAATCCCACCTCT-T-GTCGATGTAGTTGACGTTTGCCCACCC-CC
62 ATCGATCCATGGCTTGCG-C-ATCCCGCCTCTCTGGCCGACGTAG-TG-C--CCGCCCGCCCGCC
* * * * * *
2112730 GGCTC-TTT-ATCAGGTTGGCTTA-GC-TATGGAGTTCATTCCCAGTCTAGGATCAGGACCAAAA
121 CGCTCGTTTCGTC-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGAAT
* * * ** *
2112791 CTGAGGG-T-CTTGCAGC--GATCGGCAGGCATGCTGAGGGGGCAACACGATCGGTCCTCGACTC
184 C-GAGGGTTAC-GGCAGCAGGATCGGCA-GCACGCTGAGGGGG--AC-CCATCGACCCCCGACT-
* * * * *
2112852 TGCGCATCCT-GCCTTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCAT
242 TGCGCATCCTACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * * *
2112916 ACGGAGTTCATTCCCAATTTAAG--AT-CAGA-C-CGGT-TCGATGGTTGCGGGTACACATGCTG
307 ACGGAGTTCATTCCCAATCTAAGATATAGAGACCACGATACCGAGGGTTGTGGGTGCACATGCTG
* * ** *
2112975 GGCTCGGGCATGTGTTGGTGCCGTATTTGTTTTT-GCTCAGGG-CACCAT---C---G--T--CG
372 GGCTCGAGCATGTGCTGGTGCCACATTT-TTTTTCGC-CCGGGCCACCATCGCCGGAGCATCGCG
* *
2113028 GAGAACCTGACCGGCGGCACTAGGGTTCCGACGATT-GGGGGGCCGGGGGG-GTGTGCATGCATG
435 GAGAACCTGACCGGCGGCATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCA--CATG
* * * *
2113091 ATGTGTGATGGGTGCTGGTTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAACA
498 ATGTGCGATGGGTGCTGG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
2113156 ACTCACACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTC
562 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * *
2113221 TAAAATGGGAACACATTTTTCAAATGGTCACAAAATCCTGTACGCTTCGAGTTTTTAGCTAAATT
627 TGAAATGGGGACACTTTTTTC-AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* *
2113286 GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCT
691 -TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * * * *
2113351 GAAAAAATTTTAAAAAATCACGAACCGTAAAAAGTTTCCAAAGTCATGAAAACTAGAAAACGAGT
755 GAAAAAATTTAAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
*
2113416 CGTCTTGCCATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
819 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*** *
2113474 CATAAAAATGGCATTGGCACAACAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCG
1 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
2113539 ATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGTTTC
66 ATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
* * * * *
2113604 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTGGACCGGACCAAGGGTTACGG
131 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGG
** * * *
2113669 CAGCAGGATCTACAGCAC-ATAGAGGGGGACCCAGTCGATCCCCC-ACTTGCGCATTCTGCCCCT
196 CAGCAGGATCGGCAGCACGCT-GAGGGGGACCCA-TCGA-CCCCCGACTTGCGCATCCTACCCCT
* * *
2113732 CTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCA
258 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
2113797 ATCTAAGCATATAGAGTTCATTCCTAGTCTAAGATCGGACCGGCCCGAGGGTT-TCGGGTGCAAA
323 ATCTAAG-ATATAGAG---A--CC-A--C---GAT---A-----CCGAGGGTTGT-GGGTGCACA
* * *
2113861 TGCTGGGCTCGAGCATGTGTTGGTGCCACATATTTTTTCGCCCGGGCCACCATCGTCGGAGCATC
367 TGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGCCACCATCGCCGGAGCATC
* * * * * *
2113926 GCGGGAGTACCTGATCGGCGGCATTATGGTTCCGACGATTGAGGAGGTCGGGGGGTGTGCGCACA
432 GC-GGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCG--CA
* * * *
2113991 CATGA-GTGCCGATGGGTACTGGTACTTTGCCCTTATATTGGGCCTCCTATCCCGTCATCAAAGC
494 CATGATGTG-CGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCC-TCATCAAACC
2114055 T-GAGAAGCTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGATTTGCTGCCAGTAGCCATT
556 TCGAGAA-CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATT
*
2114118 AAAGTGTCTGAAAT-GGGACACTTTTTTCAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAG
619 AAAGTGTCTGAAATGGGGACACTTTTTTCAATGGTCACAAAATCCTGTACACTTCGAGTTTTT--
* * * **
2114182 AGCTGATATTTTTTATGCAT-TC-A-AAAAATACAAGGATCAATGTCTTCCCAAGTTTGGGGTGA
682 AGCTGA-ATTTTTTATGCATGCCAACAAAAATACAAGGATC-ACGTC-TACCAAGTTTGGGGCCA
*
2114244 AAACTCCTTCTGAAAAAAACATTAAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
744 AAACTCCTTCTG-AAAAAA-TTTAAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
*
2114309 TAGAAAAATGAGTCGTCTTGCCATGAAAACTTCGCATGAAGGCTTAAGGGACCCATTGTATGGAA
807 TAG-AAAATGAGTCGTCTTGCCATG-AAACTTCACATGAAGGCTTAAGGGA-CCATTGTAT-GAA
2114374 TATTACAAGC
868 T-TTACAAGC
*
2114384 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCG
1 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
** * * *
2114449 ATCCATGGCTTGCGCATCCCATCTCTTTGGCCGGCGTAGTGCCCGCCCG-CCACCCGCTCGTTTC
66 ATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
* * *
2114513 GTCGGTTGGCTTACGTATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACAG
131 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGG
* **
2114578 CAGTAGGATCATCAGCACGCTGAGGGGGACCCTATCGACCCCCGACTTGCGCATCCTACCCCTCT
196 CAGCAGGATCGGCAGCACGCTGAGGGGGACCC-ATCGACCCCCGACTTGCGCATCCTACCCCTCT
* * *
2114643 GGCCGACTGAGCGCCCACACGCTCG-TTCTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAG
260 GGCCGACTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
*
2114707 TCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGGTGCACATG
324 TCTAAG-ATATAGAG---A---CCA--C---GAT--------ACCGAGGGTTGTGGGTGCACATG
* * * * *
2114772 CTGGGCTAGGGCATGTGCTGGTGCCACATTTCTTTTCGCCCAGGG-CACCATCACCAGAGCATCG
369 CTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTCGCCC-GGGCCACCATCGCCGGAGCATCG
* * * *
2114836 TTGGAGAACCTGACCGGCGGCATTACGGTTTCGGCGATTGGGGGGGCCGAGGGGGGTGTGCGCAC
433 -CGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATTGGGGGGGCC--GGGGGGTGTGCGCAC
* *
2114901 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGG
495 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
2114966 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTG
560 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
2115031 TCTGAAATGGGGACACTTTTTACAAGTGGTCACAAAATCCTATACACTTTGAGTTTTTAGCTGAA
625 TCTGAAATGGGGACACTTTTTTCAA-TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
* * * * *
2115096 CTTTTTTATGCATGCCCACAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAATTACTT
689 -TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
2115161 CTGAAAAAATTTAAAAAAATTTCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
753 CTGAAAAAATTTAAAAAAA-TCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGA
*
2115226 ATCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
817 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
2115286 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCA
1 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
2115351 ATCCATGGCTCGCGCATCCCGCCTCTCT-GCTCGACGTAGTGCCCGCCTGCCCGCCCCCTCGTTT
66 ATCCATGGCTTGCGCATCCCGCCTCTCTGGC-CGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * * * * ** *
2115415 CGTCGGTTAGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACT-GAGTATTGC
130 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAATCGAGGGTTAC
* * * * * * *
2115479 GGCAGTAGAATCGGCAACACGCTAAGGGGGACCCAATCGATCCCCGACTTGCGTATCCTGCCCCT
194 GGCAGCAGGATCGGCAGCACGCTGAGGGGGACCC-ATCGACCCCCGACTTGCGCATCCTACCCCT
* * * *
2115544 CTGGCCGATTGAGCGCCCGCACACTCGTTTCGTGGGTGGACTTAGGCATACGGAGTTCCTTCCCA
258 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
2115609 GTCTAAG--ATCG-GACCAC-AT--CGAGGGTTGTGGGTGCAGATGCTGGGCTCGGGCAAGTGCT
323 ATCTAAGATATAGAGACCACGATACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCT
* * *
2115668 GGTGCCACATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGG
388 GGTGCCACATTTTTTTTCGCCCGGGCCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGGCGG
* * * *
2115733 CATTGGGGTTCCGACGATTGGGGTGGTCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGT
452 CATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
2115798 ACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAA-CTCGAGAACTCACACCCCCTTAAAGAG
517 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
2115862 CATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
582 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
2115927 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTCAGCCT-AATTTTTT-TGCACATGCCAATA
647 C-AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG-CTGAATTTTTTATG--CATGCCAACA
*
2115990 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAGAATTTTAAAAAAA
708 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA-AAATTTAAAAAAA
* * * *
2116055 TCCTGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTGTTGCCACGAAACT
772 TCC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
*
2116120 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
836 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
2116161 CATAAAAATGGCATTGGAATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCG
1 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
** * * *
2116226 ATCCGCGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG---G-TTGTTTC
66 ATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
* * * * * * * *
2116287 ATCGGATGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCGG
131 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGG
* * * ** * * *
2116352 CAGCAAGATCGGCAGCATGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCTACCCCTCT
196 CAGCAGGATCGGCAGCACGCTGAGGGGGACCC-ATCGACCCCCGACTTGCGCATCCTACCCCTCT
* * * **
2116417 GGTC-AGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACGTAGGCATACGGAGTTCATAGCCAA
260 GGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
* * * *
2116481 TCTAAGAT-CA-A-A-C-CGA-ACCGAGGGTTGCGAGTGCACACGCTGGGCTCGAGCATGTGCTG
324 TCTAAGATATAGAGACCACGATACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCTG
*
2116540 GTGCCACATTTTTTTTCGCCCGGGCCACCAT---C---G--T--CGGAGAACCTGACCGGTGGCA
389 GTGCCACATTTTTTTTCGCCCGGGCCACCATCGCCGGAGCATCGCGGAGAACCTGACCGGCGGCA
* * * *
2116595 TTGGGGTTCCGATGATTGGGGGGGCCGGGGGGTGTGCGCACATTATGTGGGATGGGTGCTGGTAC
454 TTAGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
2116660 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
519 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
2116725 TTTGAGATTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
584 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * * *
2116790 CATGGTCACAAAATCCCGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCGTACCAAAAAAAA
649 -ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAA
* * *
2116855 TACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCATCTGAAAATATTTTAAAAAAATCCC
712 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA-AATTTAAAAAAAT-CC
* * * * *
2116920 AAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCCTCTTGCCATGAAAATTCAC
775 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* *
2116985 ATGAAGGCTTAAGCGACCATTGTATGAATTTACAAGT
840 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* ** *
2117022 GATAAAAATGGCATTGGCACCGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
1 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
** * * *
2117087 ATCCATGGCTTATGAATCCCGCCTCTCTGGCAGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTC
66 ATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
* * *
2117152 AG-CGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACC-AGATCGAGGGTT
131 -GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ATCGAGGGTT
2117213 GTGACAGCAA
Statistics
Matches: 3976, Mismatches: 451, Indels: 355
0.83 0.09 0.07
Matches are distributed among these distances:
860 116 0.03
861 390 0.10
862 8 0.00
863 59 0.01
864 71 0.02
865 264 0.07
866 98 0.02
867 220 0.06
868 107 0.03
869 252 0.06
870 5 0.00
871 231 0.06
872 3 0.00
873 6 0.00
874 178 0.04
875 285 0.07
876 5 0.00
877 114 0.03
879 1 0.00
882 2 0.00
887 2 0.00
890 9 0.00
891 52 0.01
893 3 0.00
894 1 0.00
896 1 0.00
897 1 0.00
899 2 0.00
900 2 0.00
901 3 0.00
902 158 0.04
903 250 0.06
904 116 0.03
905 124 0.03
906 64 0.02
907 129 0.03
908 102 0.03
909 386 0.10
910 140 0.04
911 12 0.00
914 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGG
CAGCAGGATCGGCAGCACGCTGAGGGGGACCCATCGACCCCCGACTTGCGCATCCTACCCCTCTG
GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC
TAAGATATAGAGACCACGATACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCTGGT
GCCACATTTTTTTTCGCCCGGGCCACCATCGCCGGAGCATCGCGGAGAACCTGACCGGCGGCATT
AGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAT
GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCGAACCG
TAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGC
Found at i:2117522 original size:26 final size:26
Alignment explanation
Indices: 2117486--2117537 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2117476 GGTTAACGTT
2117486 GGCATACGGAGTTCATTCCCAATCTA
1 GGCATACGGAGTTCATTCCCAATCTA
* *
2117512 GGCATATGGAGTTCATTTCCAATCTA
1 GGCATACGGAGTTCATTCCCAATCTA
2117538 AGATTGGATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GGCATACGGAGTTCATTCCCAATCTA
Found at i:2118586 original size:26 final size:26
Alignment explanation
Indices: 2118550--2118602 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2118540 GTTAACGTTG
2118550 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
2118576 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2118602 G
1 G
2118603 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2119484 original size:26 final size:26
Alignment explanation
Indices: 2119448--2119500 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2119438 GTTGACTTAG
**
2119448 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2119474 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2119500 G
1 G
2119501 ACCGGACCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2120122 original size:889 final size:875
Alignment explanation
Indices: 2118395--2121243 Score: 3455
Period size: 889 Copynumber: 3.2 Consensus size: 875
2118385 TGGGTTGACT
* * * *
2118395 TACGGAGTTCATTCCCAGTCCAA-GTTCAGACCGAACCTAGGGTTGCCGCAGCAGGATCAGTAGC
1 TACGGAGTTCATTCCCAGTCTAAGGTT-GGACCGAACC-AAGGTTG-CGTAGCA-GATCA--A--
** * * * * *
2118459 CGTTGAAGGGGACCCGATCGATTCCTCAG-TTACGCATACTGCCCCTCTGGCCTACTGAGTGCCC
58 CGCAGAAGGGGACCCGATCGA-TCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCC
* * * *
2118523 GCACACTCATTTCGTGGGTTAACGTT-GGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGT
122 GCACGCTCATTTCGTGGGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * *
2118587 TCATTTCCAGTCTAAGATTGGACCGGACCAAGGGTTACGGGTGCACA-AGCTGGGCTCGGG--GG
186 TCATTCCCAGTCTAAGATCGGACC-AACCGAGGGTTGCGGGTGCACATA-CT-GGCTCGGGCATG
*
2118649 ATGCTGGTGCCACA-TTTTTTTCGCTCGGGCCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
248 -TGCTGGTGCCACATTTTTTTTCGCTCGGGGCACCAT---C---G---C--CGGAGAACCTGACC
* *
2118713 GGAGGCATTGGGGTTCCGCCGATTAAGGGGACCGGGGGGGTGTGCGCACATAATGTGCGATGGGT
301 -G-GGCATTGGGGTTCCGGCGATT-AGGGGA-CGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
2118778 GCTCGTACTTGGCCCTTATATT--CACCCCTATCCCTCATCAAACCTTGAGAACGCACACCCCCT
362 GCTGGTACTTGGCCCTTATATTGGC-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * **
2118841 TAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTAAGAAATGGGGACA
426 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
2118906 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGACTTTGTAGCTGAATTTTTTTATGCATGC
491 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGC
* * *
2118971 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAACGCCTTCTGAAAAAATTTTAAA
556 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * *
2119036 CAAATCCCGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
621 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
* * **
2119101 AACTTGACATGAAGGCTTAAGGGACCATTGTATGAATAAACAAGCCATAAAAATGGCATTGGCAT
686 AACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
2119166 GGCAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC
751 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC
* *
2119231 GCCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCGCTCGTTTCGTCGGTTCGCTTAGGCA
816 GCCTCTCTGGCCGACGTAGTGCCC-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
2119293 TACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGTAGCAGATCGGTAACAT
1 TACGGAGTTCATTCCCAGTCTAAGGTTGGACCGAACCAA-GGTTGC-GTAGCAGATC---AAC--
* * * * **
2119358 GCAGAAGGGGACCCGATCGATCCTCGGCTTGCGTATCCTGCCCCTCTGGTCGGTTGAGCGCCCGC
59 GCAGAAGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGC
* **
2119423 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTGGTCTAAGCATACGGAGTTCA
124 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
*
2119488 TTCCCAGTCTAAGACCGGACCATACCGAGGGTTGCGGGTGCACATACTGGACTCGGGCATGTGCT
189 TTCCCAGTCTAAGATCGGACCA-ACCGAGGGTTGCGGGTGCACATACTGG-CTCGGGCATGTGCT
* *
2119553 GGTGCCACATTTTTTTTCGCCCGGGGCACCATCGCCGGAGAACTTGACCAGTGGCATTGGGGTTC
252 GGTGCCACATTTTTTTTCGCTCGGGGCACCATCGCCGGAGAACCTGACC-G-GGCATTGGGGTTC
* *
2119618 CGGCGATTAGGGGAGCGGGGGGGTGTGCGCACATGATGTGCGACGGGGGCTGGTACTTGGCCCTT
315 CGGCGATTAGGGGA-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
2119683 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
379 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
2119748 TTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
444 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
2119813 AAAATCCTGTAAACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGACAACAAAAATACAAGGAT
509 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGAT
* * * *
2119878 CACGTGC-ACCACGTGTGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAAATCCCGAACCGTAA
574 CACGT-CTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAA
* * **
2119942 AAAGTTTCCAAAATCGTGAAAAGTAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCT
638 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCT
* * *
2120007 TAAAGGACCGTTGTATGAATTTATAAGCCATAAAAATGGCATTCGCATGGCAGAAATATGAAGAT
703 TAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
* *
2120072 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
768 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGT
*
2120137 AGTG--CCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
833 AGTGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * **
2120178 TACGGAGTTCATTCCCAGTCTAAGGCTGAACTAAACCGAAGGTTGCAGTAGCAAGATCAACAGCA
1 TACGGAGTTCATTCCCAGTCTAAGGTTGGACCGAACC-AAGGTTGC-GTAGC-AGATCAAC-GCA
** * * * *
2120243 CGTTGGGGGGACCCGATCGATCCCCGACTTACGCATCTTGCCACTTTGGCCGACTGAGCGCCCGC
62 -G--AAGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGC
* * *
2120308 ACGCTCATTTCATGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
124 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
2120373 TTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGGTGCACGTGCTAGGCTCGGGCATGTGCT
189 TTCCCAGTCTAAGATCGGA-CCAACCGAGGGTTGCGGGTGCACATACT-GGCTCGGGCATGTGCT
* *** *
2120438 GGTGTCGTGTTTTTTTTCGCTCGGGGCACCATCGTCGGAGAACCTGACC-GGCA-----------
252 GGTGCCACATTTTTTTTCGCTCGGGGCACCATCGCCGGAGAACCTGACCGGGCATTGGGGTTCCG
* *
2120491 GC-ATT-------GGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATA
317 GCGATTAGGGGACGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
2120548 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-TCCCTTAAAGAGCATTTGAGATTTTA
382 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
2120612 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGTACACTCTTTTCAAATGGTCACAAA
447 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
2120677 ATCCGGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCAAGCCAAAAAAAATGCAAGGATCAC
512 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCAC
** *
2120742 GTCTACCAAGTTTGGGGCCAAAACTCAATCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAA
577 GTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAA
* *
2120807 GTTTTACAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
641 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
* * * *
2120872 TGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTT
706 AGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* * * * * *
2120937 CCTAAACTCACCTACGACCCTATCGATCTATGGCTTGCGCGTCTCACCTCTCTGGCCGACGTAGT
771 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT
** * * *
2121002 GCCCACCCGTTCGCCCGTTCATTTCGTCGGTTGGCTTAGGCT
836 G-CC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
2121044 TACAGAGATCATTCCCAGTCTGAAGGTTGTG---GCAGC-AGGAT---TAGCAG--C-ACGCTA-
1 TACGGAGTTCATTCCCAGTCT-AAGGTTG-GACCGAACCAAGGTTGCGTAGCAGATCAACGC-AG
* * * * * * * *
2121098 AGGGGGAGCCGATCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCTGGCTGAGTGCCCGCACGT
63 AAGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGC
* * * ** * *
2121163 TCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGGGTAAGCATATGGAGTTCACTCC
128 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
2121228 CAGTCTAAGATCGGAC
193 CAGTCTAAGATCGGAC
2121244 TGGAGCGCAC
Statistics
Matches: 1713, Mismatches: 203, Indels: 118
0.84 0.10 0.06
Matches are distributed among these distances:
850 1 0.00
851 123 0.07
854 2 0.00
855 3 0.00
856 1 0.00
858 2 0.00
859 4 0.00
860 1 0.00
861 152 0.09
862 306 0.18
863 4 0.00
865 2 0.00
866 50 0.03
867 6 0.00
870 3 0.00
871 2 0.00
882 7 0.00
883 4 0.00
885 278 0.16
886 13 0.01
887 1 0.00
888 57 0.03
889 443 0.26
890 2 0.00
891 1 0.00
894 1 0.00
896 1 0.00
897 17 0.01
898 188 0.11
899 16 0.01
900 22 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
TACGGAGTTCATTCCCAGTCTAAGGTTGGACCGAACCAAGGTTGCGTAGCAGATCAACGCAGAAG
GGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCA
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCAACCGAGGGTTGCGGGTGCACATACTGGCTCGGGCATGTGCTGGTGCCACA
TTTTTTTTCGCTCGGGGCACCATCGCCGGAGAACCTGACCGGGCATTGGGGTTCCGGCGATTAGG
GGACGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
TCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCCCGCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
Found at i:2120369 original size:26 final size:26
Alignment explanation
Indices: 2120335--2120385 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2120325 TGACTTAGGT
2120335 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
2120361 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
2120386 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:2122904 original size:26 final size:26
Alignment explanation
Indices: 2122875--2122927 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2122865 GTTGACTCAG
* * *
2122875 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
2122901 GCATACGAAGTTCAATCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
2122927 G
1 G
2122928 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:2123758 original size:26 final size:26
Alignment explanation
Indices: 2123729--2123781 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2123719 GTTGACTTAG
* *
2123729 GCATACGGAGTTAATTCCCAGTTTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
2123755 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
2123781 G
1 G
2123782 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:2124664 original size:26 final size:26
Alignment explanation
Indices: 2124627--2124679 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2124617 GTTGACTTAG
*
2124627 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2124653 GCATA-GGAAGTTCATTCCCAGTCTAA
1 GCATACGG-AGTTCATTCCCAGTCTAA
2124679 G
1 G
2124680 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2125562 original size:26 final size:26
Alignment explanation
Indices: 2125526--2125578 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2125516 GTTGACTTAG
*
2125526 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2125552 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2125578 G
1 G
2125579 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2125729 original size:899 final size:898
Alignment explanation
Indices: 2123665--2126236 Score: 3953
Period size: 898 Copynumber: 2.9 Consensus size: 898
2123655 GGATCAGCCA
* * *
2123665 GCTTGTGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATCCTGCCTCTCTGGC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * **
2123730 CATACGGAGTTAATTCCCAGTTTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
65 CATACGGAGTTCATTCCTAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGATTGGAC
* *** * * * * *
2123794 CGAGGGTTACAGGTGCACATACTGGGCTC-GAGCATGTACTGGTGCC-AAATGTTTTTTCGCTCG
129 CAAGGGTTGTGGGTGCACATGCTGGGCTCAGA-CATGTGCTGGTGCCGTATTGTTTTTTCGCCCG
** * * * * * * **
2123857 GGGACCATCGTTGGAGCATCACCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGG
193 GCCACCATCATTGGAGCAACGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGGCAAT-TAGGG
* * **
2123922 GGCCTTGGGGGGTGTGCACACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCC
257 GG-CTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCC
* * *
2123987 CTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTA
321 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
2124052 CTGCCAGTAGCCATTAAA-ATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
386 CTGCCAGTAGCCATTAAAGA-GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTAT
* * * *
2124116 ACACTTCGACTTTTTAGTTGAATTTTTTTGTG-ATGCCAACAAAAATACAAGGATCATGTCTACC
450 GCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
2124180 AAGTTTGGGGCCAAAACTCCTTATGAAAAAATTTTAAAAAAA-C-TCGAACCGTAAAAAGTTTCA
515 AAGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAAATCTTC-AACCGTAAAAAGTTTCA
* *
2124243 AAAATCGTGAAAAATAGAAAATC-AGTCGTCTTGCCAAGAAACTTCACATGAAGGCTTAAGGGAC
579 AAAATCGTGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTGACATGAAGGCTTAAGGGAC
* *
2124307 CACTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGGCAGAAATATGAAGATGTGCCTAA
643 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAA
* * *
2124372 ACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCTCGCCTGTCTGGTCGACTTAGTGCCCG
708 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTGTCTGGCCGACGTAGTGCCCG
*
2124437 CCAGCCCGCCACTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAATCTAACATCAGA
773 CCAGCCCGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAATCTAACATCAGA
* ** * * ** * *
2124502 CCAGGCTGAGGGTTATGGTAGTAGGATTGACAGCACGCTGAGGGGACCCGGCCGATCCCCG
838 CCAGGCTAAGGGTTATGACAGCAAGATCAAAAGCACGCTGAGGGGACCCGACCGATCCCCG
* * * * *
2124563 GCTTGCGCATCCTGCCTCTCTCGCCAGTTGAGCGCCCGCGCGCTCGTTTCGTGAGTTGACTTAGG
1 GCTTGCGCATCCTGCCTCTCT-GGCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
2124628 CATACGGAGTTCATTCCTAGTCTAAGCATAGGAAGTTCATTCCCAGTCTAAGATTGGACTGGACC
65 CATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACC
*
2124693 AAAGGTTGTGGGTGCACATGCTGGGCTCAGACATGTGCTGGTGCCGTATT-TTTTTTCGCCCGGC
130 AAGGGTTGTGGGTGCACATGCTGGGCTCAGACATGTGCTGGTGCCGTATTGTTTTTTCGCCCGGC
* *
2124757 CACCATCATCGGAGCAACGCCAGAGAACCTGACTGGCGGCATTGGGGTTACGGCAATTAGGGGGG
195 CACCATCATTGGAGCAACGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGGCAATTA-GGGGG
*
2124822 C-CGGGGGGTGTGCGCACATGATGTGCAATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTA
259 CTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTA
2124886 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
324 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
2124951 CCAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAATTCCTATGCAC
389 CCAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATGCAC
* * *
2125016 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAAAAAAAATACAAGGATCACGTCTACCAAGT
454 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
2125081 TTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAAATCTTCAACCGTAAAAAGTTTCAAAAAT
519 TTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAAATCTTCAACCGTAAAAAGTTTCAAAAAT
*
2125146 CGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGT
584 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGT
* *
2125211 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGGTAGAAATATGAAGATGTGCCTAAACCCAC
649 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
2125276 CCACCACCCTATCGATCAACGGCTTGCGCATCTCACTTGTCTGGCCGACGTAGTGCCCGCCCGCC
714 CTACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTGTCTGGCCGACGTAGTGCCCGCCAGCC
* * *
2125341 CGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAATCTAAGATCATATC-GGA
779 CGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAATCTAACATCAGACCAGG-
* * *
2125405 CTAAGGGTTGTGACAGCAAGATCAAAAGCACGTTGAGGGGGACCCGACCGATCCCTG
843 CTAAGGGTTATGACAGCAAGATCAAAAGCACGCTGA-GGGGACCCGACCGATCCCCG
* *
2125462 GCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGG
1 GCTTGCGCATCCTGCCTCTCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
2125527 CATACGAAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACC
65 CATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACC
2125592 AAGGGTTGTGGGTGCACATGCTGGGCTCAGACATGTGCTGGTGCCGTATTGTTTTTT-GCCCGGC
130 AAGGGTTGTGGGTGCACATGCTGGGCTCAGACATGTGCTGGTGCCGTATTGTTTTTTCGCCCGGC
2125656 CACCATCATTGGAGCAACGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGGCAATTAGGGGGC
195 CACCATCATTGGAGCAACGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGGCAATTAGGGGGC
* *
2125721 TGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGATACTTGGCCCTTATATTGGCCCCCTAT
260 TCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
2125786 CCCTCATCAAACCTCAAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
325 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
2125851 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAACTCCTATGCACT
390 CAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATGCACT
* *
2125916 TCAAGTTTTTAGCTGAATTTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
455 TCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
2125981 TTGGGGCCAAAATTCCATCTGAAAAAATTTTAAAAAAATCTTGAACCATAAAAAGTTTCCAAAAT
519 TTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAAATCTTCAACCGTAAAAAGTTTCAAAAAT
* *
2126046 CGTGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTGACATGAAGGCTTAAGGGACCATTGA
584 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGT
2126111 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
649 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
2126176 CTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCC
714 CTACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTGTCTGGCCGACGTAGTGCCCGCC
2126237 GGAGAACCTG
Statistics
Matches: 1527, Mismatches: 131, Indels: 30
0.90 0.08 0.02
Matches are distributed among these distances:
896 205 0.13
897 74 0.05
898 499 0.33
899 459 0.30
900 290 0.19
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCTTGCGCATCCTGCCTCTCTGGCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACCA
AGGGTTGTGGGTGCACATGCTGGGCTCAGACATGTGCTGGTGCCGTATTGTTTTTTCGCCCGGCC
ACCATCATTGGAGCAACGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGGCAATTAGGGGGCT
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATGCACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAAATCTTCAACCGTAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTGTCTGGCCGACGTAGTGCCCGCCAGCCCG
CCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAATCTAACATCAGACCAGGCTA
AGGGTTATGACAGCAAGATCAAAAGCACGCTGAGGGGACCCGACCGATCCCCG
Found at i:2126734 original size:558 final size:560
Alignment explanation
Indices: 2125673--2126792 Score: 1814
Period size: 558 Copynumber: 2.0 Consensus size: 560
2125663 ATTGGAGCAA
* ** * *
2125673 CGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGGCAATTAGGGGGCTGGGGGGGTGTGCGCAC
1 CGCCAGAGAACCTGACCGGCAACATTGGGGTTCCGACAATTAGGGGGCTGGGAGGGTGTGCGCAC
*
2125738 ATGATGTGCGATGGGTGCCGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
66 ATGATGTGCGATGGGTGCCGATACTTGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
* *
2125803 GAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
131 GAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
2125868 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAACTCCTATGCACTTCAAGTTTTTAGCTGAA
196 TATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAA
* *
2125933 TTTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCA
261 TTGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCA
**
2125998 TCTGAAAAAATTTTAAAAAAATCTTGAACCATAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAC
326 TCTGAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAC
*
2126063 GAGTCGTCTTACCATGAAACTTGACATGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCAT
391 GAGTCGTCTTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCAT
*
2126128 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
456 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATC
* *
2126193 CATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCC
521 CACGGCTTGCGCATCCCGCCGCTCTGGCCGACGTAGTGCC
* * ** *
2126233 CGCCGGAGAACCTGACCGGCAACATTGGGGTTCCTATGATTAGGGGGGTCGGGAGGGTGTGCGCA
1 CGCCAGAGAACCTGACCGGCAACATTGGGGTTCCGACAATTAGGGGGCT-GGGAGGGTGTGCGCA
* * *
2126298 CATGATGTGCGATGGGTGCTGGTACTTGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
65 CATGATGTGCGATGGGTGCCGATACTTGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
* * *
2126363 AGAACTCACA-TCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGT
130 AGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * **
2126427 GTATGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGA
195 GTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGA
*
2126492 A-TGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCC
260 ATTGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * **
2126555 TTCTGAAAAAATTTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
325 ATCTGAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCCAAAATCGTGAAAAATAGAAAA
* * *
2126620 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCA
390 CGAGTCGTCTTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCA
2126685 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGAT
455 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGAT
* *
2126750 CCACGGCTTGCGCATCCCGTCGCTCTGGTCGACGTAGTGCC
520 CCACGGCTTGCGCATCCCGCCGCTCTGGCCGACGTAGTGCC
2126791 CG
1 CG
2126793 GCCACCTGTC
Statistics
Matches: 515, Mismatches: 44, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
558 235 0.46
559 47 0.09
560 149 0.29
561 84 0.16
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (560 bp):
CGCCAGAGAACCTGACCGGCAACATTGGGGTTCCGACAATTAGGGGGCTGGGAGGGTGTGCGCAC
ATGATGTGCGATGGGTGCCGATACTTGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
GAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAA
TTGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCA
TCTGAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAC
GAGTCGTCTTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCAT
AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATC
CACGGCTTGCGCATCCCGCCGCTCTGGCCGACGTAGTGCC
Found at i:2127019 original size:26 final size:26
Alignment explanation
Indices: 2126989--2127038 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2126979 AACTTAGGCG
*
2126989 TACGGTGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
2127015 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
2127039 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:2128392 original size:716 final size:712
Alignment explanation
Indices: 2127012--2128468 Score: 2088
Period size: 716 Copynumber: 2.0 Consensus size: 712
2127002 CCCAGTCTAA
* * * * *
2127012 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGAGATTACATGCTCGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGAGATCACAAGCTCGG
* *
2127077 CTCGGGCATTTGCTGGTGTCATATTTTTTTTCACCCGGGCCACCATCACCGGAGCATCGCCAGAG
66 CTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGCCACCATCACCGGAGCATCGCCAGAG
* * * *
2127142 AACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGCGGCGGAGGGGGGTGTGCGCACATGTTG
131 AACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGCGGCGGAGGGGGGTGTGCACACATGATG
* * * *
2127207 TGCGATGGGTACTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCTGAGAACTC
196 TGCGATGGGTACCGGTACTTGGCCCTCATATTGCCCCCCTATCCCTCATCAAACCCTGAGAACTC
2127272 ACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGGTCTGAAA
261 ACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGGTCTGAAA
** * * * *
2127337 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTTAAGTTTTTAGCTGAATTTTTTT
326 TAAGGACACTTTTTTCAAATAGTCACAAAATCCTATACAGTTTAAGGTTTTAGCTGAATTTTTTT
* *
2127402 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
391 GGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAA
* *
2127467 ATTTTAAAAAAATCCTGAACCATAAAAATTTTGAAAAATGTGAAAAATAGAAAATGAGTCGTCTT
456 ATTTTAAAAAAATCCTGAACCATAAAAATTTTGAAAAATATGAAAAATAGAAAACGAGTCGTCTT
* * *
2127532 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCT
521 GCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATAAATTTACAAGCCATAAAAATGGCA
* * ** *
2127597 TTGGCACGGCAAAAATATGAAGATGTGCCTAAAGCCAGCTACCACCCTATTGATCCATGGCTTAC
586 TTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTAC
* * *
2127662 GCATCCCTCCTCTCTTG-CCGACGTAGAGCCCGCTTGCC-CGTCCGCTCGTTTCGTCGGTTGGCT
651 GCATCCCTCCTCTCTGGCCCG-CGTAGAGCCCGC---CCGC-T-CGCTCATTTCGTCGGATGGCT
2127725 TAG
710 TAG
* * * * *
2127728 GCGTATGGAGTTCATTCCCAGTCTCAA-ATTGCACCAGACCGAGGGTTGTG-GGTGCACAAGCTG
1 GCATATGGAGTTCATTCCCAGTCT-AAGATCGCACCAGACCGAGGGTTGCGAGAT-CACAAGCTC
* * ** * ** *
2127791 GGCTCGGGCATGTGTTGGTGCCGTATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGCCGG
64 GGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGCCACCATCACCGGAGCATCGCCAG
* *
2127856 AGAACCTGACCGACGGCATTGGGGTTTCGGCGATTGGGGGGGC-G-GGGGGGTGTGCACACATGA
129 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGCGGCGGAGGGGGGTGTGCACACATGA
** * *
2127919 TGTGCGATTTGTGCCGGTACTTGGCCCTCATATTGCCCCCCTGTCCCTCATCAAA-CCTGAAGAA
194 TGTGCGATGGGTACCGGTACTTGGCCCTCATATTGCCCCCCTATCCCTCATCAAACCCTG-AGAA
* *
2127983 CTCACACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
258 CTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-GTCT
*
2128048 GAAATAAGGACACTTTTTTCAAATAGTCACAAAATCCTATACAGTTTGAGGTTTTAGCTGAA-TT
322 GAAATAAGGACACTTTTTTCAAATAGTCACAAAATCCTATACAGTTTAAGGTTTTAGCTGAATTT
* * * *
2128112 TTTTGGACATGCCAACAAAAATAGAAGGATCATGTCTACCAAGTTTTGGGCTAAAACTCCATCTG
387 TTTTGG-CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCTG
*
2128177 AAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTTG-AAAATCATGAAAAATAGAAAACGAG
451 AAAAAATTTTAAAAAAATCCTGAACCATAAAAA-TTTTGAAAAAT-ATGAAAAATAGAAAACGAG
*
2128241 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTCTAAATTTACAAGCCATAAA
514 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATAAATTTACAAGCCATAAA
* *
2128306 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCAC
579 AATGGCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCAC
* * *
2128371 GGCTTGCGCAT-CCTGCCTCTCTGGCCCGCGTAGTGCCCGCCCGCTCGTTCATTTCGTCGGATGG
644 GGCTTACGCATCCCT-CCTCTCTGGCCCGCGTAGAGCCCGCCCGCTCGCTCATTTCGTCGGATGG
2128435 CTTAG
708 CTTAG
*
2128440 GCATATGGAGTTCATTCCCAGTTTAAGAT
1 GCATATGGAGTTCATTCCCAGTCTAAGAT
2128469 TAGACCGGAC
Statistics
Matches: 659, Mismatches: 71, Indels: 26
0.87 0.09 0.03
Matches are distributed among these distances:
711 2 0.00
712 45 0.07
713 7 0.01
714 134 0.20
715 155 0.24
716 311 0.47
717 5 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (712 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGAGATCACAAGCTCGG
CTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGCCACCATCACCGGAGCATCGCCAGAG
AACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGCGGCGGAGGGGGGTGTGCACACATGATG
TGCGATGGGTACCGGTACTTGGCCCTCATATTGCCCCCCTATCCCTCATCAAACCCTGAGAACTC
ACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGGTCTGAAA
TAAGGACACTTTTTTCAAATAGTCACAAAATCCTATACAGTTTAAGGTTTTAGCTGAATTTTTTT
GGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAA
ATTTTAAAAAAATCCTGAACCATAAAAATTTTGAAAAATATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATAAATTTACAAGCCATAAAAATGGCA
TTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTAC
GCATCCCTCCTCTCTGGCCCGCGTAGAGCCCGCCCGCTCGCTCATTTCGTCGGATGGCTTAG
Found at i:2128635 original size:26 final size:26
Alignment explanation
Indices: 2128599--2128651 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2128589 GTTGACTTAG
2128599 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2128625 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2128651 G
1 G
2128652 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2131734 original size:890 final size:894
Alignment explanation
Indices: 2130013--2135986 Score: 7560
Period size: 890 Copynumber: 6.7 Consensus size: 894
2130003 NNNNNNNNNN
* *
2130013 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTTGAAAAAATT-AAAAAAATCCCAA
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTAAAAAAAATCCCAA
* * *
2130077 AACGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACAT
66 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
*
2130142 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAGAAATA
131 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
* * ** *
2130207 TGAAGATGTGCCTAAACCCACCTACCACCCAATGATCCACGACTTTCATATCCCGTCTCTCTGGC
196 TGAAGATGTGCCTAAACCAACCTACCACCCAATGATCCACGACTTGCGCATCCCGCCTCTCTGGC
** ** * * * *
2130272 TAACGTAGTGCCTGCCCGTCCGCTCGTTTAATGGGTTAGCCTAGGCATACTGAGTTCATTCCCAG
261 CGACGTAGTGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * ** * ** * * *
2130337 TCTAAGATCAGATCAGACCGAGGGTTGTGGCAATAGAATCGACAGCACTCATG-GGTGGACTCGA
326 TCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCATGAGGGGGACTCGA
* * * * *
2130401 TCGATCCCTGGCTTGCGCATCCTGCCCCTCTGTTCGGTTGAGCGCCCACACACTCATTTCGTGGG
391 CCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
2130466 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTCATTCCCAGTCTAAGATC
456 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTCATTCCCAGTCTAAGATC
* * * *
2130531 GGATTGGACCGAGGGTTACGGGTGCATATGCTAGGCTAAGGCATGTGCTGGTGCCATATTGTTTT
521 GGACTGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATATT-TTTT
* * * *
2130596 CTTCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATT-GGGTTCTGACGA
585 CTCCCAGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGA
*
2130660 TTGGGGGGGCCGGGGGGTGTGTGCATATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTG
650 TTGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
2130724 GCCCCCTATCCCTCATCAATCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
715 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
2130789 GTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATC
780 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
2130854 CTGTACACTTCATTTTTTTGGCTGAATTTTTTTGTGCATGCCAATAAAAAT
845 CTGTACACTTCA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAAT
*
2130905 ACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACACCTTCTGAAAAAATTAAAAAAAATCCCAA
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTAAAAAAAATCCCAA
* * *
2130970 AACATAAAAAGTTTCAAAAATCGTGAAAAATAG-AAACGAGTTGTCTTGCCATGAAACTTCACAT
66 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
2131034 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
131 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
* ** *
2131099 TGAA-ATGTG-CTAAACCAACCTACCACCGCAATGATCCACGACTTTCATATCCCGTCTCTCT-G
196 TGAAGATGTGCCTAAACCAACCTACCACC-CAATGATCCACGACTTGCGCATCCCGCCTCTCTGG
** ** * *
2131161 CTAACGTAGTGCCTG-CCGTCCGCTCGTTTAATCGGTTGGCCTAGGCATACTGAGTTCATTCCCA
260 CCGACGTAGTGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * * * * *
2131225 GTCTAAAGATCAGATCGGACCGAGGGTTGTGGCAAACAGAATCGACAGCACTCATG-GGTGGACT
325 GTCT-AAGATCAGACCGGACCGAGGGTTGCAG-TAGCAGGATCGACAGCACGCATGAGGGGGACT
* * * *
2131289 CGATCGATCCCTGGCTTGCACATCCTGCCCCTCT-GTCGGCTGAGCGCCCACACACTCATTTCGT
388 CGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGT
2131353 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTCATTCCCAGTCTAAG
453 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTCATTCCCAGTCTAAG
* * * * *
2131418 ATCGGATTGGACCGAGGGTTATGGGTGCATATGCTAGGCTAAGGCATGTGCTGGTGCCATATTTT
518 ATCGGACTGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTTT
** *
2131483 TTCTCCCAGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATT-GGGTTTTGAC
583 TTCTCCCAGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGC
*
2131547 GATTGGGGGGGCCGGGGGGTGTGTGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
648 GATTGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
2131612 TGGCCCCCTATCCCTCATCAATCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
713 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
2131677 AGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAA
778 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
2131742 TCCTGTACACTTCATTTTTTTGTCTGAATTTTTTTATGCATGCCAATAAAAAT
843 TCCTGTACACTTCAGTTTTTAG-CTGAATTTTTTTGTGCATGCCAATAAAAAT
2131795 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTAAAAAAAATCCCAA
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTAAAAAAAATCCCAA
*
2131860 AACGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
66 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
2131925 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
131 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
* * * * * *
2131990 TGAAGATGTGCATAAACCAACCTACCACCCTATCCATCCACGGCTTACGCATCGCGCCTCTCTGG
196 TGAAGATGTGCCTAAACCAACCTACCACCCAAT-GATCCACGACTTGCGCATCCCGCCTCTCTGG
* * * * * * * *
2132055 CCGGCATACTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTTATTCCCA
260 CCGACGTAGTGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * *
2132120 GTCTAAGATCAGACCAGATCAAGGGTTGCAGTAGCAGAATCGACAGCACGC-TGAAGGGGACTCG
325 GTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCATGAGGGGGACTCG
* * * * * * * * * *
2132184 ATCAATCCCCGGCTTTCGCATCCTACCCCTCTGGCCGGCTGAACGCCTGCACGCTCGTTTCATGG
390 ACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGG
2132249 GTTGACTTAGGCATACGGAGTTCATTCCCAG--T----CTA---AG---A-T--C-G-----GAT
455 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTCATTCCCAGTCTAAGAT
*
2132293 -----TGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTGTTT
520 CGGACTGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATATT-TTT
* * *
2132353 T-TCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGG
584 TCTC-C-CAGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGG
* *
2132417 CGATTGTGGGGGCCGGGGGGTGT-TCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
647 CGATTGGGGGGGCCGGGGGGTGTGT-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* **
2132481 ATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
711 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
2132546 ACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
776 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
2132611 AATCCTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
841 AATCCTGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAAT
* * *
2132666 ACAAGGATCACGTCTACCAAATTTGGGGCCGAAACACCTTCTGAAAAAATTTAAAAAAAATCCCG
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAA-TTAAAAAAAATCCCA
* * * *
2132731 AACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCGTGAAACTTCACA
65 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
*
2132796 TCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
130 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* ** * *
2132861 ATGAAGATGTGCCTAAACCCACCTACCACCCTTTTGATCCA-TAGCTTGCGCATCCCGCATCTCT
195 ATGAAGATGTGCCTAAACCAACCTACCACCC-AATGATCCACGA-CTTGCGCATCCCGCCTCTCT
*
2132925 GGCCGACGTAGTGCCTGCCCGCCTGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
258 GGCCGACGTAGTGCCTGCCCG--T-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * ** *
2132990 TTCCTAGTCTAAGATCAAACCGAACTGAGGGTTG-TGATAGTAGGATCGGTAGGA--CATTGAGG
319 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-TAGCAGGATCGACAGCACGCA-TGAGG
* * * * ** *
2133052 GGGAC-CTGACCGATCCCTGGCTTGCACATCTTGCCCCTCTAGCCGATTGAGCACCCGCACGCTC
382 GGGACTC-GACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTC
* *
2133116 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
446 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTCATTCCCA
* ** * * * *
2133181 GTCTAAGATCAGACCAGACCGAGGGTTGCGAGTGCACATGCTGGGCTCGGGAATGTGCTGGTGCC
511 GTCTAAGATCGGACTGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTG-C
* * * * *
2133246 GCATTTTTTTTCGT-CCTGGCCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTG
575 -CATATTTTTTC-TCCCAGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTG
* * *
2133310 GGGTTCCGGCGATTGGGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
638 GGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTG
*
2133375 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
703 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
*
2133440 GAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
768 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * * *
2133505 GGTCACAAAATCCTATACAATTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCCACAAAAAT
833 GGTCACAAAATCCTGTAC-ACTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAAT
* * * * *
2133568 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTGCTGAAAAAATTTAAAAAAATCCCGA
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTAAAAAAAATCCCAA
* * * *
2133633 ACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACAT
66 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
**
2133698 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATA
131 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
* * * *
2133763 TGGAGATGTGCCTAAACCAACCTACCACCCTAAGGATCCACGACTTGCGCATCCTGCCTCTCTGA
196 TGAAGATGTGCCTAAACCAACCTACCACCC-AATGATCCACGACTTGCGCATCCCGCCTCTCTGG
*
2133828 CCGACGTAGTGCCTGCCCGCCCGCCTGCCCGCCTGCTCGTTTCGTCGGTTGCCTTAGGCATACGG
260 CCGACGTAGTGCCT----GCCCG--T-----CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* *
2133893 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGATCGACAGGACG-AT
313 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAT
* * ** * * * * *
2133957 GAGGGGGACCCGGCCGATCCCCAGCTTGCGCATACTGCCCCCCTGGTCGACTGAGCACCTGCACG
378 GAGGGGGACTCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACG
*
2134022 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T----CTA---AG---A-T-
443 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTCATTC
* *
2134073 -C-G-----GA-C---C-GGACCGAGGGTTGCGGGTACACATGCTGGGCTCAGGCATGTGCTGGT
508 CCAGTCTAAGATCGGACTGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGT
* * *
2134126 GCCATATTTTTTTTTCGCCCGGGGCACCATCGTAGGAGCATCATCGGAGAACCTGACCGACGGCA
573 GCCATA---TTTTTTCTCCCAGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCA
* *
2134191 TTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTAC
635 TTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTAC
* *
2134256 TTGGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAGCCCCTTAAAGATC
700 TTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* *
2134321 ATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTC
764 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
2134386 AAATGGTCACAAAATCCTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAATAAAA
829 AAATGGTCACAAAATCCTGTACAC-TTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAA
2134451 AT
893 AT
* * * * *
2134453 ACAAGGATAACGTCTACCAAGTTTGGGGCCAGAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAA-TTAAAAAAAATCCCA
* * *
2134518 AACCGTAAAAAGTTTCAAAAATCATGAAAAGTAGAAAACGAGTCGTCTTACCATGAAACTTCACA
65 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
**
2134583 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAAT
130 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * *
2134648 ATGAAGATGTGCC-AAACCAACCTACCACCCTATCAATGCACGACTTGCGCATCCCGCCTCTCTG
195 ATGAAGATGTGCCTAAACCAACCTACCACCCAAT-GATCCACGACTTGCGCATCCCGCCTCTCTG
* *
2134712 GTCGACGTAGTGCCTGCTCGTCCGCCCGTCTGCCCGCTCGTGTCGTCGGTTGGCTTAGGCATACG
259 GCCGACGTA--G--TGC-C-T--GCCCG--T--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * *
2134777 GAGTTCATTCCTAGTTTAATATTAGACCAGAACGAGGGTTACAGTAGCAGGATC-AGCAGCACGC
312 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGA-CAGCACGC
* * *
2134841 -TGAGGGGGAC-CTGACCGAT-CCTCAGCTTGCACATCCTGCCCCTCTGGTCGACTGAGCGCCCG
376 ATGAGGGGGACTC-GACCGATCCCT-GGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCG
* * * *
2134903 CACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
439 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTC
* * * * * * * **
2134968 ATACCCAGTCTAAGATCGAACTGGACCGACGATTGCAGGTGCACATG-TCAGGCTTGGGCATGTG
504 ATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGGTGCACATGCT-GGGCTCAGGCATGTG
* * *
2135032 CTGGTGCCACATTTTTTTTTGCCC-GGGCCACCA---TC---G---C--CGGAGAACCTGACCGG
568 CTGGTGCCATA-TTTTTTCT-CCCAGGG-CACCATCGTCGGAGCATCATCGGAGAACCTGACCGA
* *
2135085 CGACATTGGGGTTCCGGTGATTGGGGGGAGCCGATGGGGG-GTGTACGCACATGATGTGCGATGG
630 CGGCATTGGGGTTCCGGCGATTGGGGGG-GCCG--GGGGGTGTGT--GCACATGATGTGCGATGG
** * **
2135149 GTGCTGGTACTTGGCATTTATATTGGCCCCCTATCCCTCATCAAAGCTTGAGAACTCACA-CCCC
690 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* * *
2135213 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
755 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
2135278 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
820 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATG
*
2135343 CCAAAAAAAAT
884 CCAATAAAAAT
* * **
2135354 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTGTGAAAAAATTTTAAAAAAATTTC
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCTGAAAAAA-TTAAAAAAAATCCC
* *
2135418 AAACCGTAAAAAGTTTCAAAAATCGTGTAAAATAGAAAACGAGTCATTCTCTGTCCATGAAACTT
64 AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC-GTCT-TG-CCATGAAACTT
* *
2135483 CACATGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCATGGAAG
126 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
* * *
2135548 AAATATGAAGATGTGCCTAAACCCACCAACCACCCAATCGATCCACG-GTTGGCGCATCCCGCCT
191 AAATATGAAGATGTGCCTAAACCAACCTACCACCCAAT-GATCCACGACTT-GCGCATCCCGCCT
* * *
2135612 CTCTGGCC-AGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGA
254 CTCTGGCCGA-CGTAGTGCCTGCCCGTCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * * * *
2135676 GTTCATTCCCAGTCTAAGATC-GAACTGGAATGAGGGTTGCGGCAACAGGATCGGCAGCACGCA-
314 GTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAT
* * * * * * * *
2135739 GAGGGGGACCCGACTGATCCCCGGCTTGTGCATCCCGCCCCTCTGG-CTGGTTAAACGCCCGCAC
378 GAGGGGGACTCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGTC-GGCTGAGCGCCCGCAC
* * **
2135803 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
442 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTCATT
* * * * *
2135868 CCCAGTCTAAGATCAGACCGGATCAAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGT
507 CCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGG
* * * * *
2135933 TGCCGTATTTTTT-TCGCCTAAGCCACCATCGTCGGAGCATCGTCAGAGAACCTG
572 TGCCATATTTTTTCTC-CC-AGGGCACCATCGTCGGAGCATCATCGGAGAACCTG
2135987 TAAAAAAATT
Statistics
Matches: 4527, Mismatches: 394, Indels: 307
0.87 0.08 0.06
Matches are distributed among these distances:
868 53 0.01
869 5 0.00
870 47 0.01
871 278 0.06
872 214 0.05
873 5 0.00
874 1 0.00
875 4 0.00
876 164 0.04
878 2 0.00
879 1 0.00
881 4 0.00
882 4 0.00
883 43 0.01
884 122 0.03
885 452 0.10
886 155 0.03
887 3 0.00
888 6 0.00
889 174 0.04
890 508 0.11
891 203 0.04
892 158 0.03
893 138 0.03
894 91 0.02
895 49 0.01
896 14 0.00
897 250 0.06
898 4 0.00
899 43 0.01
900 10 0.00
901 443 0.10
902 421 0.09
903 44 0.01
904 98 0.02
905 57 0.01
906 2 0.00
907 13 0.00
909 188 0.04
910 13 0.00
911 43 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTAAAAAAAATCCCAA
ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
TGAAGATGTGCCTAAACCAACCTACCACCCAATGATCCACGACTTGCGCATCCCGCCTCTCTGGC
CGACGTAGTGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCATGAGGGGGACTCGA
CCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTCATTCCCAGTCTAAGATC
GGACTGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTTTTTC
TCCCAGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGAT
TGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
TGTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAAT
Found at i:2133165 original size:26 final size:26
Alignment explanation
Indices: 2133135--2133187 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2133125 GTTGACTTAG
2133135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2133161 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2133187 G
1 G
2133188 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2134965 original size:26 final size:26
Alignment explanation
Indices: 2134929--2134981 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2134919 GTTGACTTAG
*
2134929 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
2134955 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
2134981 G
1 G
2134982 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:2135430 original size:901 final size:899
Alignment explanation
Indices: 2132259--2135946 Score: 4134
Period size: 885 Copynumber: 4.1 Consensus size: 899
2132249 GTTGACTTAG
* ** * * * * * *
2132259 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGACGATTGCAGGTACACATGCTAGG
* * * * *
2132324 CTCGGGCATGTGCTGGTGCCATA-TTGTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGCCACCA---TCGGA-CA----CGGA
* * * *
2132388 GAACCTGACCGACGGCATTAGGGTTCCGGCGATTGTGGGGGCCGGGGGGTGTTCGCACATGATGT
123 GAACCTGACCGACGACATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTACGCACATGATGT
* * **
2132453 GTGATGGGTGCTGGTACTTGGCC-CTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTC
188 GCGATGGGTGCTGGTACTTGGCCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * **
2132517 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
253 ACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCCAAA
*
2132582 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGATTTTTTAGCTGAATTTTTT
318 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
2132647 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCGAAACA-CCTTCTGAA
383 TGTGCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCC-AAAAATCCTTCTGAA
* * * * * * *
2132711 AAAATTTAAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAATGAGTC-
447 AAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGTAAAATAGAAAACGAGTCA
* *
2132775 GTCT-TG-CCGTGAAACTTCACATCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
512 GTCTCTGACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
** * * * ** **
2132838 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTTGATCCAT
577 AATGGCATTGGCACAGAAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCAATCAATCCA-
* * * * * ** * *
2132903 AGCTT-GCGCATCCCGCATCTCTGGCC-GACGTAGTGCCTGCCCGCCTGCCTGCTTGTTTCGTCG
641 CGCTTGGCGCATCCCGCCTCTCTGGCCAG-TGTAGTGCCCGCCCGCCCGCCCACTCGTGTCGTCG
* **
2132966 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA-AACC-GAACTGAGGGTT-GTG-A
705 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGAACCAGAAC-GAGGGTTACAGCA
* * * * *** * ** **
2133027 TAGTAGGATCGGTAGGACATTGAGGGGGACCTGACCGATCCCTGGCTTGCACATCTTGCCCCTCT
768 -A-CAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCT
* * * * * * * *
2133092 AGCCGATTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
831 GGCTGACTAAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
2133157 CTAA
896 CTAA
* * * * * *
2133161 GCATATGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGC-GAGTGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGACGATTGCAG-GTACACATGCTA
* * * * *
2133224 GGCTCGGGAATGTGCTGGTGCCGCA-TTTTTTTTCGTCCTGGCCACCATCGCCGGAGCATCACCG
64 GGCTCAGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGCCACCAT---C-G-G-A-CA-CG
* * *
2133288 GAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGCTGGGGGGTGTGCGCACATGAT
121 GAGAACCTGACCGACGACATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTACGCACATGAT
* *
2133353 GTGTGATGGGTGCTGGTACTTGGCC-CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
186 GTGCGATGGGTGCTGGTACTTGGCCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* * * **
2133417 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTG
251 TCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCCA
* * * *
2133482 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACAATTTGAGTTTTTAGCTGAATTGT
316 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
2133547 TTTGTGCATGCCCACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTGCTGA
381 TTTGTGCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGA
* * * *
2133612 AAAAA-TTTAAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
446 AAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGTAAAATAGAAAACGAGTC
*
2133676 -GTCT-T-CCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
511 AGTCTCTGACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * **
2133738 AAATGGCATTGGCACAGCAGAAATATGGAGATGTGCCTAAACCAACCTACCACCCTAA-GGATCC
576 AAATGGCATTGGCACAGAAGAAATATGAAGATGTGCCTAAACCAACCAACCACCC-AATCAATCC
* * **
2133802 ACGACTT-GCGCATCCTGCCTCTCTGACCGACGTAGT-GCCTGCCCGCCCGCCTGCCCGCCTGCT
640 ACG-CTTGGCGCATCCCGCCTCTCTGGCC-A-GT-GTAG--TGCCCG--C-CC-GCCCGCCCACT
* * *
2133865 CGTTTCGTCGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACC-GGACTGAG
695 CGTGTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGAACCAGAAC-GAG
* * * * * * *
2133928 GGTTGCAGTAGCAGGATC-GACAGGACG-ATGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATA
758 GGTTACAGCAACAGGATCAG-CAGCACGCA-GAGGGGGACCCGACCGATCCCCAGCTTGCACATC
* * * * * * * *
2133991 CTGCCCCCCTGG-TCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
821 CCGCCCCTCTGGCT-GACTAAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGT
2134055 TCATTCCCAGTCTAA
885 TCATTCCCAGTCTAA
* * *
2134070 G-AT-C-G-G---A----C---C---G---G-ACC-GA--G--GGTTGCGGGTACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGACGATTGCAGGTACACATGCTAGG
* *
2134109 CTCAGGCATGTGCTGGTGCCATATTTTTTTTTCGCCCGGGGCACCATCGTAGGAGCATCATCGGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGCCACCATC----G-G-A-CA-CGGA
* * *
2134174 GAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATTATGT
123 GAACCTGACCGACGACATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTACGCACATGATGT
*
2134239 GCGATGGGTGCTGGTACTTGGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
188 GCGATGGGTGCTGGTACTTGGCCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * *
2134304 ACAGCCCCTTAAAGATCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAA
253 ACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCCAAA
* *
2134369 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTGGCTGAATTTTTT
318 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
2134434 TGTGCATGCCAATAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAGAACTCCTTCTGAAA
383 TGTGCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAA
*
2134499 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG-AAAAGTAGAAAACGAGTC-
448 AAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGTAAAA-TAGAAAACGAGTCA
2134562 GTCT-T-ACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
512 GTCTCTGACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
2134625 AATGGCATTGGCACAGCAGAAATATGAAGATGTGCC-AAACCAACCTACCACCCTATCAATGCAC
577 AATGGCATTGGCACAGAAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCAATCAATCCAC
* * * *
2134689 GACTT-GCGCATCCCGCCTCTCTGGTCGACGTAGTGCCT-GCTCGTCCGCCCGTCTGCCCGCTCG
642 G-CTTGGCGCATCCCGCCTCTCTGG-C--C--AGTG--TAG-T-GCCCGCCCGCCCGCCCACTCG
* * *
2134752 TGTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTTTAATATTAG-ACCAGAACGAGGGT
697 TGTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGAACCAGAACGAGGGT
* * * * * *
2134816 TACAGTAGCAGGATCAGCAGCACGCTGAGGGGGACCTGACCGATCCTCAGCTTGCACATCCTGCC
761 TACAGCAACAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCC
* * *
2134881 CCTCTGG-TCGACTGAGCGCCCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATT
826 CCTCTGGCT-GACTAAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
2134945 CCCAGTCTAA
890 CCCAGTCTAA
* * *
2134955 GCATACGGAGTTCATACCCAGTCTAAGATCGAACTGGACCGACGATTGCAGGTGCACATG-TCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGACGATTGCAGGTACACATGCT-AG
**
2135019 GCTTGGGCATGTGCTGGTGCCACATTTTTTTTT-GCCCGGGCCACCATC-G-C-CGGAGAACCTG
65 GCTCAGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGCCACCATCGGACACGGAGAACCTG
* *
2135080 ACCGGCGACATTGGGGTTCCGGTGATTGGGGGGAGCCGATGGGGGGTGTACGCACATGATGTGCG
130 ACCGACGACATTGGGGTTCCGGCGATTGGGGGG-GCC---GGGGGGTGTACGCACATGATGTGCG
* * **
2135145 ATGGGTGCTGGTACTTGG-CATTTATATTGGCCCCCTATCCCTCATCAAAGCTTGAGAACTCACA
191 ATGGGTGCTGGTACTTGGCCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
2135209 -CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTAAAATG
256 GCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCCAAAATG
2135273 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
321 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
2135338 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTGTGAAAAAA
386 GCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
** * *
2135403 TTTTAAAAAAATTTCAAACCGTAAAAAGTTTCAAAAATCGTGTAAAATAGAAAACGAGTCATTCT
451 TTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGTAAAATAGAAAACGAGTCAGTCT
* *
2135468 CTGTCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATG
516 CTGACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
2135533 GCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCAATCGATCCACGGTT
581 GCATTGGCACAGAAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCAATCAATCCACGCTT
*
2135598 GGCGCATCCCGCCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGC
646 GGCGCATCCCGCCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGCCCACTCGTGTCGTCGGTTGGC
* ** * * *
2135663 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGAATGAGGGTTGCGGCAACAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAACCAGAACGAGGGTTACAGCAACAGGATC
* * * ** **
2135728 GGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGTTAA
776 AGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCTGACTAA
* *
2135793 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 ACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
2135852 GCATACAGAGTTCATTCCCAGTCTAAGATC-AGACCGGATCAAGGGTTACGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGACGATTGCAGGTACACATGCTAG
* **
2135916 GCTCAGGCATGTGCTGTTGCCGTATTTTTTT
65 GCTCAGGCATGTGCTGGTGCCACATTTTTTT
2135947 CGCCTAAGCC
Statistics
Matches: 2454, Mismatches: 241, Indels: 187
0.85 0.08 0.06
Matches are distributed among these distances:
881 1 0.00
883 38 0.02
884 120 0.05
885 457 0.19
886 159 0.06
887 5 0.00
888 9 0.00
889 8 0.00
892 2 0.00
895 1 0.00
896 4 0.00
897 263 0.11
898 5 0.00
899 44 0.02
900 8 0.00
901 428 0.17
902 452 0.18
903 44 0.02
904 97 0.04
905 53 0.02
906 3 0.00
907 3 0.00
908 5 0.00
909 183 0.07
910 16 0.01
911 46 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGACGATTGCAGGTACACATGCTAGG
CTCAGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGCCACCATCGGACACGGAGAACCTGA
CCGACGACATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAGCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCCAAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGTAAAATAGAAAACGAGTCAGTCTCTGAC
CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACAGAAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCAATCAATCCACGCTTGGCGC
ATCCCGCCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGCCCACTCGTGTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATAGAACCAGAACGAGGGTTACAGCAACAGGATCAGCAG
CACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCTGACTAAACGCC
CGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2135862 original size:26 final size:26
Alignment explanation
Indices: 2135826--2135878 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2135816 GTTGACTTAG
*
2135826 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2135852 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2135878 G
1 G
2135879 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2136256 original size:310 final size:312
Alignment explanation
Indices: 2135680--2136255 Score: 818
Period size: 314 Copynumber: 1.8 Consensus size: 312
2135670 TACGGAGTTC
** * *
2135680 ATTCCCAGTCTAAGATCGAACTGGAATGAGGGTTGCGGCAACAGGATCGGCAGCACGCAGAGGGG
1 ATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTGCAGCAACAGGATCGGCAGCACGCAGAGGGG
* * * * * ** *
2135745 GACCCGACTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGTTAAACGCCCGCACGCTCGTT
66 AACCCAACCGATCCCCAGCTTGTACATCCCGCCCCTCTAACCGGTT--ACGCCCGCACGCTCGTT
* *
2135810 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
129 TCATGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
* * *
2135875 TAAGATCAGACCGGATCAAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGTTGCCGTA
194 TAAGATCAGACCGGATCAAGGATTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCA
2135940 TTTTTTTCGCCTAAGCCACCATCGTCGGAGCATCGTCAGAGAACCTGTAAAAAA
259 TTTTTTTCGCCTAAGCCACCATCGTCGGAGCATCGTCAGAGAACCTGTAAAAAA
* * * * *
2135994 ATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGCAGCAGCAGGATCGGTAGGACGCTGAGGG
1 ATTCCCAGTCTAAGATCGA-ACCAGAACGAGGGTTGCAGCAACAGGATCGGCAGCACGCAGAGGG
*
2136058 GAACCCAACCGATCCCCAGCTTGTACATCCTGCCCCTCTAACCGG-T-CGCCCGCACGCTCGTTT
65 GAACCCAACCGATCCCCAGCTTGTACATCCCGCCCCTCTAACCGGTTACGCCCGCACGCTCGTTT
* ** * *
2136121 CATGGGTTGACTTAGGCAAACGGTGTTCATTCTTAGTCTAAGCATACGGAGTTCATTTCCAGTCT
130 CATGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT
* * *
2136186 AAGATCAGACCGG-TCAATGATTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
195 AAGATCAGACCGGATCAAGGATTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCAT
2136250 TTTTTT
260 TTTTTT
2136256 TGCCCCGGGC
Statistics
Matches: 230, Mismatches: 31, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
309 51 0.22
310 88 0.38
313 2 0.01
314 89 0.39
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (312 bp):
ATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTGCAGCAACAGGATCGGCAGCACGCAGAGGGG
AACCCAACCGATCCCCAGCTTGTACATCCCGCCCCTCTAACCGGTTACGCCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
AGATCAGACCGGATCAAGGATTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATT
TTTTTCGCCTAAGCCACCATCGTCGGAGCATCGTCAGAGAACCTGTAAAAAA
Found at i:2137039 original size:26 final size:26
Alignment explanation
Indices: 2137009--2137067 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
2136999 ATTTCGTGGG
2137009 GCATAC-GTAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
2137035 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2137061 -CAT-CAGA
1 GCATACAGA
2137068 CCAGACTGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 24 0.75
27 1 0.03
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2138683 original size:750 final size:753
Alignment explanation
Indices: 2137310--2138745 Score: 2066
Period size: 750 Copynumber: 1.9 Consensus size: 753
2137300 TTTGAGATTT
2137310 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACGTTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACGTTTTTCAAATGGTCACA
* ** *
2137375 AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCAAAAATACAAGGATC
66 AAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
2137440 ATGTCTACCAAGTTTGGGGACAAAACCCCTTCTGAAAAAATTTTAAAACAATCCCAAACCGTAAA
131 ACGTCTACCAAGTTTGGGGACAAAACCCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCATAAA
*
2137505 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGATATGAAATTCACATGAAGGCTTA
196 AAGTTTCAAAAATCATGAAAAATAGAAAAC-AGTCATCTTGACATGAAATTCACATGAAGGCTTA
* * *
2137570 AGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACAGTAGAAATATGGAGATAT
260 AGGGACCATTGTATGAATTTACAAGCAAGAAAAATGGCATTGGCACAGCAGAAATATGAAGATAT
* * *
2137635 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGAGTAG
325 GCCTAAACCCACCTACCACCCTACCGATCAACGGCTTGCACATCCCGCCTCTCTGGCCGGAGTAG
** * *
2137700 TGCCCGCCCGCCCGCCCGCCCATTCATTTTGTCGGTTGGCTTAGGCATATGAATGTCATTCCCCA
390 TGCCCGCCCGCCCGCCCG-CCA-TCATTTCATCAGTTGGCTTAGGCATAGGAATGTCATTCCCCA
* * * * *
2137765 TCTAAGATTAGACCAGACTAAGGGTTCTGGTAGTAGGATCGACAGCACACAGAGGGGGACCTGGC
453 CCTAAGATCAGACCAGACTAAGGGTTCTGGCAGTAGGATCGACAGCACACAGAGGGGGACCCGAC
* * *
2137830 CAATCCCCGGCTTGTGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
518 CAATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTCGTGGGT
* *
2137895 TGACTTAGGCATACGAAGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
583 TGACTTAGGCACACGAAGTTCATTCCCAGTCAAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
* **
2137960 GACCGAACCGAGGGTTATGGGTGCACATGCTGGGCTCAGGTATGTGTTGGTGTCGCATTTTTTTA
648 AACCGAACCGAGGGTTACAGGTGCACATGCTGGGCTCAGGTATGTGTTGGTGTCGCATTTTTTTA
2138025 AGCCCAGGGCACCATCACCTGAGCATCACCGGACTTAGGCA
713 AGCCCAGGGCACCATCACCTGAGCATCACCGGACTTAGGCA
* **
2138066 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACGTTTTTCAAATGGTCACA
*
2138131 AAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTT-TTCATGCCAACAAAAATACAAGGATC
66 AAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
2138195 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCATAAA
131 ACGTCTACCAAGTTTGGGGACAAAACCCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCATAAA
* * *
2138260 AAGTTTTAAAAATCATGAAAAATAGAAAAC-GTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
196 AAGTTTCAAAAATCATGAAAAATAGAAAACAGTCATCTTGACATGAAA-TTCACATGAAGGCTTA
* * ** *
2138324 AGGGACCATTGTATGAATTTACAAGCCAGGAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
260 AGGGACCATTGTATGAATTTACAAGCAAGAAAAATGGCATTGGCACAGCAGAAATATGAAGATAT
* *
2138389 GCCTAAACCCACCTAGCACTCTACCGATCAACGGCTTGCACATCCCGCCT-TCCTGGCCGGCA-T
325 GCCTAAACCCACCTACCACCCTACCGATCAACGGCTTGCACATCCCGCCTCT-CTGGCCGG-AGT
* * *
2138452 AGTGCCCGCCCGTCCGCCCG-C-TCGTTTCATCAGTTGGCTTAGGCATACGGAGT-TCATT-CCC
388 AGTGCCCGCCCGCCCGCCCGCCATCATTTCATCAGTTGGCTTAGGCATA-GGAATGTCATTCCCC
* * * * * *
2138513 AGCCTAAGATCAGACCGGATTGAGGGTTAC-GGCA-TCTGGATTGGCAGCACACAGAGGGGGACC
452 A-CCTAAGATCAGACCAGACTAAGGGTT-CTGGCAGT-AGGATCGACAGCACACAGAGGGGGACC
* * * * * * *
2138576 CGATCGATCCCCGACTTTTGCATCCTGCCCCTTTGGCCGGGTAAGCGCCCGCAGGCTCGTTTCGT
514 CGACCAATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTCGT
* * *
2138641 GGGTTGACTTAGGCACAC-AGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTGA
579 GGGTTGACTTAGGCACACGA-AGTTCATTCCCAGTCAAAGCATACAGAGTTCATTCCCAGTCTAA
* *
2138705 GATCGAACCGGACCGAGGGTTGCAGGTGCACATGCTGGGCT
643 GATCGAACCGAACCGAGGGTTACAGGTGCACATGCTGGGCT
2138746 TGAGCATGTG
Statistics
Matches: 602, Mismatches: 70, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
749 6 0.01
750 221 0.37
751 4 0.01
752 1 0.00
753 15 0.02
754 146 0.24
755 112 0.19
756 97 0.16
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (753 bp):
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACGTTTTTCAAATGGTCACA
AAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGACAAAACCCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCATAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACAGTCATCTTGACATGAAATTCACATGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCAAGAAAAATGGCATTGGCACAGCAGAAATATGAAGATATG
CCTAAACCCACCTACCACCCTACCGATCAACGGCTTGCACATCCCGCCTCTCTGGCCGGAGTAGT
GCCCGCCCGCCCGCCCGCCATCATTTCATCAGTTGGCTTAGGCATAGGAATGTCATTCCCCACCT
AAGATCAGACCAGACTAAGGGTTCTGGCAGTAGGATCGACAGCACACAGAGGGGGACCCGACCAA
TCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGA
CTTAGGCACACGAAGTTCATTCCCAGTCAAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAAC
CGAACCGAGGGTTACAGGTGCACATGCTGGGCTCAGGTATGTGTTGGTGTCGCATTTTTTTAAGC
CCAGGGCACCATCACCTGAGCATCACCGGACTTAGGCA
Found at i:2139611 original size:26 final size:26
Alignment explanation
Indices: 2139559--2139611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2139549 GTTGACTTAG
*
2139559 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATATAA
*
2139585 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAATATAA
2139611 G
1 G
2139612 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:2139923 original size:896 final size:893
Alignment explanation
Indices: 2138066--2140231 Score: 3035
Period size: 896 Copynumber: 2.4 Consensus size: 893
2138056 GACTTAGGCA
*
2138066 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
2138131 AAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTCATGCCAACAAAAATACAAGGATCA
66 AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
2138196 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCATAAAA
131 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAA
2138261 AGTTTTAAAAATCATGAAAAATAGAAAAC--GTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
196 AG-TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
**
2138324 AGGGACCATTGTATGAATTTACAAGCCAGGAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
260 AGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
* * * * *
2138389 GCCTAAACCCACCTAGCACTCTACCGATCAACGGCTTGCACATCCCGCCTTCCTGGCCGGCATAG
325 GCCTAAACCCACCTACCACTCTATCGACCAACGGCTTGCGCATCCCGCCTTCCTGGCCGACATAG
* *
2138454 TGCCCGCCCGTCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTA
390 TGCCCGCCCGCCCGCCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTA
** * * * *
2138519 AGATCAGACCGGATTGAGGGTTACGGCATCTGGATTGGCAGCACACAGAGGGGGACCCGATCGAT
455 AGATCAGACCGGACCGAAGGTTACGGCATCAGGATTGGCAGCACACAGAGGGGGACCCGACCGAA
** * * * *
2138584 CCCCGACTTTTGCATCCTGCCCCTTTGGCCGGGTAAGCGCCCGCAGGCTCGTTTCGTGGGTTGAC
520 CCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCAGGCTCATTTCATGGGTTGAC
* * * * *
2138649 TTAGGCACACAGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTGAGATCGAACC
585 TTAGGCACACAGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTATAAGATCAAACC
** * *
2138714 GGACCGAGGGTTGCAGGTGCACATGCTGGGCTTGAGCATGTGCTGGTGCCATATTTTTTTTTGCC
650 GGACCGAGGGTTGCAGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTTTTCGCC
** ** *
2138779 CGGGCACCATCGTAGAAGCATCGTCGAAGAACCTGGCCGGTGGAATTGGGGTCCCGACGATTGGG
715 CGGGCACCATC-----AG-ATCG-CGAAGAACCTGAACGGACGAATTGGGGTCCCGACAATTGGG
**
2138844 GGGGCCGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCC
773 GGGGCCGGGGGGGAGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCC
* * * *
2138909 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGAATTTGAGATTT
838 CCTATCACTCATAAAACCTCGAGAACACACACCCCCTTAAAGAGAATTTGAGATTT
* *
2138965 TACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACC
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
2139030 AAATCCTTTACATTTCGAGTTTTTTGCTGAATATTTTTGTGCATTCCAACAAAAATACAAGGATC
66 AAATCCTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * * *
2139095 ATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTAAAAAAATTTAAAAAAAATCCCAAACCGTGAA
130 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
* * *
2139160 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCATGCCATGAAACTTCACAGGAAGGCTT
195 AAGTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* *
2139225 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAACATGAAGATG
259 AAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* *
2139290 TGCCTAAACCCACCTACCACCCTATCGACCAACGGCTTGCGCATCCCGCC-TCTCTGGCCGACGT
324 TGCCTAAACCCACCTACCACTCTATCGACCAACGGCTTGCGCATCCCGCCTTC-CTGGCCGACAT
** * * * * * *
2139354 AGTGGTCGCCCGCCCGTCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
388 AGTGCCCGCCCGCCCGCCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGCC
** * **
2139419 TAAGATCGGACCGGACCGGACCGAAGGTTGTGGTAGT-AGGATTGGCAGCATGCTA-A-GGGGAC
453 TAAGATC--A---GACCGGACCGAAGGTTACGGCA-TCAGGATTGGCAGCACAC-AGAGGGGGAC
* * *
2139481 CCGACCGAACCCCGGCTTGCGCATCCTGCCCCTCTGGCCTGCTAAGCGCCCGCATGCTCATTTCA
511 CCGACCGAACCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCAGGCTCATTTCA
* * *
2139546 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTATAA
576 TGGGTTGACTTAGGCACACAGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTATAA
* **
2139611 GATCAAATCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTT
641 GATCAAACCGGACCGAGGGTTGCAGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTT
* ** * *
2139676 TTTTTCGCCCGGGGCACCATC-G-TCG-G-GGAACCT-AATTGACGACATTGGGGTTCCGGCAAT
706 TTTTTCGCCC-GGGCACCATCAGATCGCGAAGAACCTGAACGGACGA-ATTGGGGTCCCGACAAT
* * *
2139736 TGGGGGGTCGGGGGGGGAGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
769 TGGGGGGGCCGGGGGGGAGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTG
* *
2139801 GCCCCCTATCACTCATAAAACCTCGAGAACACACACCCCCTTGAAGAGCATTTGAGATTT
834 GCCCCCTATCACTCATAAAACCTCGAGAACACACACCCCCTTAAAGAGAATTTGAGATTT
*
2139861 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
2139926 AAATCCTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
66 AAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATC
* **
2139991 ACGTTTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAATTGTAAA
130 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
* * *
2140056 AAGTTATGAAAATCGTGAAAAATAGTAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
195 AAGTT-TAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* *
2140121 AAGGGACCATTGTATTAATTTACAAGCCAAAAAAATGGCATTGGCA-GGATAGAAATATGAAGAT
259 AAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGG-CAGAAATATGAAGAT
* *
2140185 GTGCCTAAACCAACCTACCACTCTATCGATCC-ACGGCTTGTGCATCC
323 GTGCCTAAACCCACCTACCACTCTATCGA-CCAACGGCTTGCGCATCC
2140232 TGCACGCTCA
Statistics
Matches: 1122, Mismatches: 127, Indels: 39
0.87 0.10 0.03
Matches are distributed among these distances:
895 5 0.00
896 465 0.41
897 5 0.00
899 96 0.09
900 112 0.10
901 3 0.00
902 208 0.19
904 1 0.00
906 185 0.16
907 40 0.04
908 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (893 bp):
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCA
CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAA
AGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
CCTAAACCCACCTACCACTCTATCGACCAACGGCTTGCGCATCCCGCCTTCCTGGCCGACATAGT
GCCCGCCCGCCCGCCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAA
GATCAGACCGGACCGAAGGTTACGGCATCAGGATTGGCAGCACACAGAGGGGGACCCGACCGAAC
CCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCAGGCTCATTTCATGGGTTGACT
TAGGCACACAGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTATAAGATCAAACCG
GACCGAGGGTTGCAGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTTTTCGCCC
GGGCACCATCAGATCGCGAAGAACCTGAACGGACGAATTGGGGTCCCGACAATTGGGGGGGCCGG
GGGGGAGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCAC
TCATAAAACCTCGAGAACACACACCCCCTTAAAGAGAATTTGAGATTT
Found at i:2142341 original size:26 final size:26
Alignment explanation
Indices: 2142312--2142364 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2142302 GTTGACTTAG
* * *
2142312 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2142338 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2142364 G
1 G
2142365 ATTGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2145006 original size:25 final size:26
Alignment explanation
Indices: 2144970--2145021 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
2144960 GTTGACTTAG
*
2144970 GCATACGAAGTTCATTCGCA-TCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2144995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2145021 G
1 G
2145022 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2145887 original size:26 final size:26
Alignment explanation
Indices: 2145857--2145909 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2145847 GTTGACTTAG
2145857 GCATACGGAGTTCA-TTCTCAGTCTAA
1 GCATACGGAGTTCATTTC-CAGTCTAA
2145883 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
2145909 G
1 G
2145910 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:2147641 original size:26 final size:26
Alignment explanation
Indices: 2147605--2147654 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
2147595 GTTGACTTAG
* *
2147605 GCATACGGAGTTCATTCCTAGTCTGA
1 GCATACGGAGTTAATTCCCAGTCTGA
*
2147631 GCATAGGGAGTTAATTCCCAGTCT
1 GCATACGGAGTTAATTCCCAGTCT
2147655 AAGATCAGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTGA
Found at i:2148722 original size:887 final size:872
Alignment explanation
Indices: 2142338--2151883 Score: 11152
Period size: 887 Copynumber: 10.8 Consensus size: 872
2142328 CCTAGTCTAA
* ** ** *
2142338 GCATACGGAGTTCATTCCCAATCTAAGATTGGACTAGACCGAGGGTTGCGGGTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * ** *
2142403 CTTGGGCATGTGCTGGTG-TCGCATTTTTTTTTGCCCTGGGCACCATCGCCGGAGCATCACCGAA
66 CTCGAGCATGTGCTGGTGCT-GCA-TTTTTTTCGCCCGGGGCACCATCGCC-GAGCATCGTCG-G
* * * * ** *
2142467 AAACCTGACCGGCGGTATTGGGGTTCTGGCGATTGGGGGTTCGGAGGGGTGTGCGCCCATGATGT
127 AAACCTGACCGGCAGCATTGGGGTTCCGACGATTGGGGGGCCGG-GGGGTGTGCGCACATGATGT
* * *
2142532 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTAA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
2142597 CACCCCTTTAAAGAACATTTGGGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
2142662 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
* * *
2142727 TTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTG-AAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
** * * **
2142791 AAATTGAAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATA-AAGAACGAGTCG
451 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAA-AACGAGTCG
*
2142855 TCTTGCCATGAAACTTCACATGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * * *
2142920 GGCATTGGCACAGTAGAAATATGAAGATGTGCTTAAACTCACCTACCACCCTATCGATCCACGAC
580 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
2142985 TTCCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCGACCTGCCCGCTCATTTCGTC-AGCT
645 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCCG-CCCGCCCGCTCGTTTCGTCGA-TT
* ** * **
2143048 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGA-CAGAGGGTTGCGGTAGCAG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCAG
* * * * *
2143112 GATCGATAGCACACTGAGGGGGACCC-AGTCGATCCTCGGCTTGCGCATCCTACCCCTCTGGTCG
772 GATCG-CAGCACGCTGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * *
2143176 ACTGAGCGCCCGCACGCTCATTTCATGGGTTTATACAAAGTTCATTCCCAGTCTAA
835 GCTGAGCGCCCGCACGCTCGTTTCGTGGG--T-T-----G---A----C--T-TAG
* * * * * *
2143232 GCATGCGGAGTTCTTTCCTAGTCTAAGATC-GACCCGGAGCGAGGGTTGTGGGTGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGAGGGTTGCGGGTGCACATGCTGG
* * * *
2143296 GCTCGAGCATGTGCTGGTGCCGCATTTTTTTCTCCAGGGGCACTATCGCCGA--A------G-AA
65 GCTCGAGCATGTGCTGGTGCTGCATTTTTTTCGCCCGGGGCACCATCGCCGAGCATCGTCGGAAA
* * * **
2143352 CCTGACCGGCGGCATTGGGGTTCCGGCAATTGGGGGGGTGGTGGGGGTGTGCGCACATGATGTGC
130 CCTGACCGGCAGCATTGGGGTTCCGACGATT-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGC
*
2143417 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2143482 CCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
2143547 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTCA-CTGAAT-TTTTAT
323 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT-AGCTGAATGTTTT-T
* * * * *
2143610 GTGCATG-CAAAAAAAATACAAGGATCATGCCTACCAAGTTTGTGGCCAAAACCCCTTCTG-AAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
2143673 AAATTTTAAAAAAATC-AGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
451 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
2143737 CTTGCCAAGATACTTCACATGAAGTCTTAAGGGACCATTGT-TGAATTTACAAACCATAAAAATG
516 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
2143801 GCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
581 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
2143866 TGCGCATCCCGTCTCTCTGGCCGGCATAGTGC-CTGTCCGCCCACCCGCTCGTTTTGTC-AGTTG
646 TGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTC-GCCCGCCCGCCCGCTCGTTTCGTCGA-TTG
* * * *
2143929 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGA
* * * * * *
2143994 TTGGTAGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCTGTCCCTCTAGCCGGCT
774 -TCGCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
* * *
2144059 GAGTGCCCGCATGCTTGTTTCGTGGGTTGACTTAG
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
2144094 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGTACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
2144159 CTCGAGCATCTGCTAGTGCTGCATTTTTTTTTGCCCGGGGCACCATCGCTGGAGCATCGTCGGAG
66 CTCGAGCATGTGCTGGTGCTGCA-TTTTTTTCGCCCGGGGCACCATCGC-CGAGCATCGTCGGA-
* * *
2144224 AACCTGACCGGCGGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGGGTGTCCGCACATGATGTG
128 AACCTGACCGGCAGCATTGGGGTTCCGACGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
2144289 CGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCTCTATGCCTCATCAAACCTTGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
2144354 ACCCCCTTAAGGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2144419 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
* * * * *
2144484 TGCATGCCAAAAAAAATA-AATGGATCACATCTATCAAGTTTGGGGCTAAAACTCCTTC-AAAAA
387 TGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * *
2144547 AAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAGTCGTGAAAAATAGAAAACGAGTCTT
451 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
2144612 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
2144677 GCATTGGCATGGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCGTAAT-GATCTACGAC
581 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGC
* * *
2144741 TTGCGCATGCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
645 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGATTGG
** *
2144806 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGAT
* * * * * * *
2144871 CAGCAGCACTCTGAGTGGGACCCGATCGATCCTCGGGTTACGTATCCTGGCCCTCTGGCCGGCTG
775 C-GCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * *
2144936 AGCACCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCG
839 AGCGCCCGCACGCTCGTTTCGT-GG--G--TT--G---AC----TT-A---G
* * *
2144988 CATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACGGTTACGGGTGCACA
1 -------GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACA
* * * * *
2145053 TGCTGGGTTCGGGCATGTGCTGGTGCTGTATTTTTTTTTGCCCGGGCCACCATCGCC-AG-A---
59 TGCTGGGCTCGAGCATGTGCTGGTGCTGCA-TTTTTTTCGCCCGGGGCACCATCGCCGAGCATCG
* *
2145113 ---G-AACCTG-CTGAC-GACATTGGGGTTCCGACGATTGGGGGG-CGAGGGGGTGTGCGCACAT
123 TCGGAAACCTGACCGGCAG-CATTGGGGTTCCGACGATTGGGGGGCCG-GGGGGTGTGCGCACAT
* * * * * **
2145171 GATGTACGATGGGTACTGGTGCTTGGCCCTTGTTTTGGCCCCCTATCCCTCATCAAACCTTAAGA
186 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
2145236 ACTCACACCCCCTTAAAGAGCAATTGAGATATTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTC
251 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
2145301 TGAAATGGGAACACTTTTTTCAAATGGTCACAAAATGCTGTACACTTCCAGTTTATAGCTGAA-G
316 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATG
* *
2145365 TTTTT-TGTCACGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTC
381 TTTTTGTG-CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* ** * *
2145429 TG-AAAAAATTTTCAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACA
445 TGAAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
2145493 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
510 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** * * *
2145558 AAAATGGCATTGGCATTTCAAAAAATATGAAGACGTGCCTAAACCCACCTACCACCCGATCGATC
575 AAAATGGCATTGGCATGGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
2145623 CACGGCTTGTGCATCCCACCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATC
639 CACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTC
* *
2145688 -AGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT--GTACCGGATCGAGGGTT-CCAG
704 GA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTGCGA-
* * * * *
2145749 TAGCAGGATTCGCAGCATGCTGAGGGGGAACCGACCGATCCCCGGCTTGCGCATCCTGCCCCTTT
766 CAGCAGGA-TCGCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCT
* * * **
2145814 GGTCGGCTGAGCGCCCGCACAG-TCATTTCATACGTTGACTTAG
830 GGCCGGCTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAG
*
2145857 GCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGATTGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CC-G-----GA-C---------
* * ** * ** * * *
2145922 CGGGGGTTGCGGGTGCACATTCTATGCTCCGGGGGT-TGCTGGTGCCGTATTTTATTCGCCCGGG
40 CGAGGGTTGCGGGTGCACATGCTGGGCT-CGAGCATGTGCTGGTGCTGCATTTTTTTCGCCCGGG
* * * *
2145986 CCACCATC-CCTAG-A------G-AACCTGACCGGCGGCATTGGGGTTCCGGCGATTGAGGGGGC
104 GCACCATCGCCGAGCATCGTCGGAAACCTGACCGGCAGCATTGGGGTTCCGACGATTG-GGGGGC
* * *
2146042 GGGGGGGGGATTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCC-TATATTGGCCCCCTA
168 CGGGGGGTG--TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
2146106 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
231 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
2146171 CCAGTCA-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTTTACA
296 CCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* *
2146235 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
360 CTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
2146300 TTTGGGG-TAAAATATCCTTCTG-AAAAATTTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAA
425 TTTGGGGCCAAAA-CTCCTTCTGAAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAA
* * * *
2146363 AATCATGAAAAATAAAAAACGAGTCGTCTTGCGATGAAACTTCACATGAAGGCTTAAGCGACCAT
489 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* ** * *
2146428 TGTATGAATTTACAAGCCATAAATATGGCATTGGCACAGTAGAAATATGAAGATGTGCCTAAA-T
554 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* * * * *
2146492 CACCTACGACCCTATCGATCCACGACTTGCGTATCCCGCCTTTCTGGCCGACGTAGTGCTCGCCT
619 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCC
* * * ** *
2146557 GTCCGCCCGCTCGTTTCATCGATCGGCTTAGGCATACATAGTTTATTCCCAGTCTAAGATCAGAC
684 GCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * *
2146622 CGGACCGAGGGTTACGACAGCAAGATCAGCAGCACGCTGAGGGGGACCAGGTCGATCCTCGGCTT
749 CGGATCGAGGGTTGCGACAGCAGGATC-GCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTT
* * ** *
2146687 ACGCATCCTGCACCTCTGGATGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAG
813 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
2146747 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
2146812 CTCGAGCATGTGTTAGTGCTGCATTTTGTTTCGCCCGGGGCACTATCGCGAGAGCATCATCGAAA
66 CTCGAGCATGTGCTGGTGCTGCATTTT-TTTCGCCCGGGGCACCATCGC-CGAGCATCGTCG-GA
* * *
2146877 AACCT-ATCC-G-A-C------G----G-C-ATTGGGTGGGCCGGGGGCTTTACGCACATGATGT
128 AACCTGA-CCGGCAGCATTGGGGTTCCGACGATTGGG-GGGCCGGGGGGTGTGCGCACATGATGT
* * *
2146926 GCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCGAACCTTGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
2146991 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2147055 TGAGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTTGCTGAATTGTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TGTTTT
*
2147120 T-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCTG-AA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* **
2147183 AAAATTTTAAAAAAATC-CTGAACCGTAAAAAGTTTTGAAAATGGTGAAAAATAGAAGGCGAGTC
450 AAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
* * * * *
2147247 GTCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGTCCACTGTATGAATTTACATGCAATAAAAA
514 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
2147312 TGGCATTGGCATGGCAGAAATATGAAGATGTG-CTAAACCCGCCTACCACCCTATCAATCTACGG
579 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
2147376 CTTGTGCATCCCGACTCTCTGGCC-AGCGTAGTAGC-CGCCCGCCTGCCCGTTCATTTCGTCGGT
644 CTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGT-GCTCGCCCGCCCGCCCGCTCGTTTCGTCGAT
* * ** * * * *
2147439 TGGCTTAGGCATACGGATTTCATTCCCAGTCTAGGATTGGA-CTGATCAAGAGTTGCGGCAGCAG
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAG
* * * * *
2147503 GATCGATAGCATGCTGAGGGGGACCCGATCGATCCCCGACTTGCACATCCTGCCCTTCTGGCCGG
772 GATCG-CAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* * *
2147568 CTGAGTGCTCGCACGCTCATTTCGTGGGTTGACTTAG
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
2147605 GCATACGGAGTTCATTCCTAGTCTGAGCATAGGGAGTTAATTCCCAGTCTAAGATCAGACTGGAC
1 GCATAC-G-G---------AGT-T---C-----------ATTCCCAGTCTAAGATCAGACCGGAC
* * * **
2147670 CGAGGGTTACAGGTGCACATGCTGGGCTCTAGCATGTGCTGGTGCTATATTTCTTTTCGCCCGGG
40 CGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTT-TTTTCGCCCGGG
* * * * *
2147735 GCACCATCGTCGA--A------G-AACCTGACCAGCAGCATTAGGATTCCGACGATTGGGGGG-T
104 GCACCATCGCCGAGCATCGTCGGAAACCTGACCGGCAGCATTGGGGTTCCGACGATTGGGGGGCC
* **
2147790 GGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATCC
169 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
2147855 CTCATGAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCA
234 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
2147920 GTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA-TAT
299 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT-T
*
2147984 CGAGTTTTTAGCTGAATGTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
363 CGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * ** *
2148049 GGGGCCAAAACTCCTTCTGAAAAAAATTTTAAAAATATCTCGAATCGTAAAAAGTTTCAAAAATT
428 GGGGCCAAAACTCCTTCTGAAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATC
* *
2148114 GTG-AAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
*
2148178 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACC
558 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACC
* *
2148243 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCTGTCC
623 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCC
* * ** * **
2148308 GCCCGCTCGTTTCATCGATCGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATTAGATTGGA
688 GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * * * *
2148373 CCAAGGGTTACGACAGCAAGATCAGCAGCACGCTGAGGGGGACCTGGTCGATCCCCGGTTTACGC
753 TCGAGGGTTGCGACAGCAGGATC-GCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* ** *
2148438 ATCCTACCCCTCTGGATGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
817 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** *
2148494 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGATTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
*
2148559 CTCGAGCATGTGTTGGTGCTGCATTTTGTTTCGCCCGGGGCACCATCGCCAGAGCATCGTCGGAA
66 CTCGAGCATGTGCTGGTGCTGCATTTT-TTTCGCCCGGGGCACCATCGCC-GAGCATCGTCGG-A
* ** * * *
2148624 AACCTGTCCGGCAGCATTGGGGTTCCGGTGATTGGGGGGCCGGGGGGTTTACGCACATGATGTGT
128 AACCTGACCGGCAGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
2148689 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACCCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2148754 CCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2148818 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTGTTTTT-
323 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TGTTTTTG
2148882 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
2148946 AATTTTAAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATGGTGAAAAACAGAAAACGAGTCGTT
452 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
2149011 TTGCCATGAAACTTCACATGAAAGCTTAAGGGTCCATTGTATGAATTTACAGGCCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
2149076 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTT
582 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
2149141 GCGCATCTCGCCTCTCTGGCC-AGCGTAGTAG-TCGCCCGCCCGCCCGTTCATTTCGTTGGTTGG
647 GCGCATCCCGCCTCTCTGGCCGA-CGTAGT-GCTCGCCCGCCCGCCCGCTCGTTTCGTCGATTGG
* * * ** * *
2149204 CTTAGGCATACGGATTTCATTCCCAGTCTAGGATCGGA-CTAATCGAGAGTTGCGGCAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGAT
* * * *
2149268 CGACAGCACGCTAAAGGGGACCCGATCGATCCTCGGCTTGCGCATCCTACCCCTCTGGCCGGCTG
775 CG-CAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * *
2149333 AGTGCTCACACGCTCGTTT-GTGGGTTGACTTAG
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
2149366 GCATACAGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C---G---G-ACC-G--
* * *
2149431 CAAGGGTTGCGAGTGCACATGCTGGGCTCTG-GCATGTGCTGATGCTGCATTTCTTTTCACCCGG
42 --AGGGTTGCGGGTGCACATGCTGGGCTC-GAGCATGTGCTGGTGCTGCATTT-TTTTCGCCCGG
* *
2149495 GGCACCATCGTCG-G-A------G-AACCTGACCAGCAGCATT-GGGTTCCGACGATTAGGGGGG
103 GGCACCATCGCCGAGCATCGTCGGAAACCTGACCGGCAGCATTGGGGTTCCGACGATT-GGGGGG
* *
2149550 CCGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
167 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
2149615 CCCTCATCGAACCTCGAGAACCCACACCCCCTTAAAGATCATTTGAGATTTGACAGGTTTGCTGC
232 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
2149680 CAGTAGCCATTAAAGTGTCTG-AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
297 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
*
2149744 TCGAGTTTTTTGCTGAATTGTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
362 TCGAGTTTTTAGCTGAA-TGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
2149808 TTGGGGCCAAAACTCCTTCTG-AAAATATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
426 TTGGGGCCAAAACTCCTTCTGAAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAA
* * * * *
2149872 TGGTTAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAAGCTTAAGGGTCCATTG
491 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
*
2149937 TATGAATTTACAGGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
2150002 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC-AGCGTAGTAG-TCGCCC
621 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGT-GCTCGCCC
* * * * * *
2150065 GCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGATTTCATTCCCAGTCTAGGATCGGA-
684 GCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
2150129 CTGATCGAGAGTTGTGGCAGCAGGATCGACAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTT
749 CGGATCGAGGGTTGCGACAGCAGGATCG-CAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTT
* * * *
2150194 GCGCATCCTACCCCTCTAGCCGGCTGAGTGCTCGCACGCTCGTTTCGTGGGTTGACTTAG
813 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
2150254 GCATACGGAGTTCATTCCCAATCTAAGCGTACAGAGTTCATTCCCAATCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCC-A-GT---C-T--A-AG----------ATC--AGACCGGACC-G--
*
2150319 CAAGGGTTGCGGGTGCACATGCTGGGCTCTG-GCATGTGCTGGTGCTGCATTTCTTTTCACCCGG
42 --AGGGTTGCGGGTGCACATGCTGGGCTC-GAGCATGTGCTGGTGCTGCATTT-TTTTCGCCCGG
* *
2150383 GGCACCATCGTCG-G-A------G-AACCTGACCAGCAGCATTGGGGTTCCGACGATTGGGGGG-
103 GGCACCATCGCCGAGCATCGTCGGAAACCTGACCGGCAGCATTGGGGTTCCGACGATTGGGGGGC
* * * *
2150438 CGGGTGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCTTATC
168 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * **
2150503 CCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTGTAGGTTTGCTGCC
233 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
2150568 AGTAGCTATTCAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA-TA
298 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT-
* * *
2150632 TCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTT
362 TCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* **
2150697 TGGGGCCAAAACTCCTTCTGAAAAAAATTTTAAAAAAATCTCGAACTGTAAAAAGTTTCAAAAAT
427 TGGGGCCAAAACTCCTTCTGAAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAAT
* * *
2150762 TGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTAACATGAAGGCTTAAGGGACCATTGT
492 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* * * *
2150827 ATGAATTTACAGGCCATAAAAATGGCATTGGCATGGTAGAAATATTAAGATGTGCCTAAACCTAC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * ** * *
2150892 CTACCACCCTATCGATCCACGGCTTGCGCATTCCGCCTTTCTGGCCGGTGTAGTGCTCGCCTGTC
622 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCC
* * * * * *
2150957 CGCTCGCTCGTTTCATCGATCGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATTAGATCGG
687 CGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * * * * *
2151022 A-CTGAGGGTTACGATAGCAAGATCAGCAGCACGCTAAGGGGGACCTGGTCGATCCCTGGCTTAC
752 ATC-GAGGGTTGCGACAGCAGGATC-GCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGC
** *
2151086 GCATCCTGCCCCTCTGGATGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAG
815 GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
2151144 GCATACCGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
2151209 CTCGAGCATGTGTTGGTGCTGTATTTTGTTTCACCCGGGGCACCATCGCCAGAGCATCGTCAGAA
66 CTCGAGCATGTGCTGGTGCTGCATTTT-TTTCGCCCGGGGCACCATCGCC-GAGCATCGTC-GGA
* * * * * * *
2151274 AACCTGTCCGACGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGAGGGGTTTACGAACATGATGT
128 AACCTGACCGGCAGCATTGGGGTTCCGACGATT-GGGGGGCCGG-GGGGTGTGCGCACATGATGT
* *
2151339 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTTGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2151404 CACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
2151468 TAGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTTGCTAAATTGTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TGTTTT
2151533 T-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
**
2151596 AAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
450 AAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
*
2151661 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
2151726 GGCATTGGCATGACAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
580 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * ** * * * *
2151791 TTGCGTATCCCACCTCTCTGGTTGACGTA--G-T-GCCCACCCGCCTGCTCGTTTCATCGGTTGG
645 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGATTGG
*
2151852 CTTAGGCATACGGAGTTGATTCCCAGTCTAAG
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
2151884 CATACGGAGT
Statistics
Matches: 7530, Mismatches: 832, Indels: 602
0.84 0.09 0.07
Matches are distributed among these distances:
857 1 0.00
858 113 0.02
859 390 0.05
860 111 0.01
861 13 0.00
862 104 0.01
863 122 0.02
864 107 0.01
865 18 0.00
866 6 0.00
867 4 0.00
868 2 0.00
869 15 0.00
870 1 0.00
871 3 0.00
872 100 0.01
873 351 0.05
874 478 0.06
875 259 0.03
876 481 0.06
877 123 0.02
878 143 0.02
879 4 0.00
880 258 0.03
881 87 0.01
882 102 0.01
883 214 0.03
884 90 0.01
885 2 0.00
886 169 0.02
887 1356 0.18
888 807 0.11
889 547 0.07
890 432 0.06
891 227 0.03
892 7 0.00
893 25 0.00
894 73 0.01
895 2 0.00
896 2 0.00
897 3 0.00
898 65 0.01
899 4 0.00
901 103 0.01
902 1 0.00
905 3 0.00
906 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (872 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGAGCATGTGCTGGTGCTGCATTTTTTTCGCCCGGGGCACCATCGCCGAGCATCGTCGGAAAC
CTGACCGGCAGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAATT
TTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGCAGC
ACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:2149402 original size:26 final size:26
Alignment explanation
Indices: 2149366--2149418 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2149356 GTTGACTTAG
2149366 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
2149392 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2149418 G
1 G
2149419 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2151893 original size:26 final size:26
Alignment explanation
Indices: 2151857--2151909 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2151847 GTTGGCTTAG
*
2151857 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
2151883 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
2151909 G
1 G
2151910 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:2152783 original size:26 final size:26
Alignment explanation
Indices: 2152747--2152799 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2152737 GTTGACTTAG
2152747 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2152773 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2152799 G
1 G
2152800 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2153663 original size:26 final size:26
Alignment explanation
Indices: 2153633--2153685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2153623 GTTGACTTAG
*
2153633 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
2153659 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2153685 G
1 G
2153686 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2154133 original size:886 final size:881
Alignment explanation
Indices: 2151834--2160267 Score: 6046
Period size: 890 Copynumber: 9.5 Consensus size: 881
2151824 CCACCCGCCT
* * * * *
2151834 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTGATTCCCAGTCTAAGCATACGGAGTTAATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAATCTAAGCAT-C-GAGTTCATT
* ** * *
2151899 CCCAGTCTAAGATCAGACTGGACCAAGGTTTAG-AGGTGCACATGCTGGGCT-TGGGCATTTGCT
63 CCCAGTCTAAGATCGGACCAGACCAAGGGTT-GCAGGTGCACATGCTGGGCTCT-GGCATGTGCT
* * *
2151962 GGTGCCGTATTTTTTCTCGCCCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC
126 GGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGAACCTGACCG-CAGCATTGGGGTTC
* * * * *
2152027 CGACGATTGGGGTGGCCGGGGGGTGTGCGCACATAATGTCCAACGGGTGCTGGTACTTGGCCCTT
190 CGACGATTAGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
2152092 ATATTGGGCCCCTATCCCTCATCAAACCTC-ATGAACTGACA-CCCCTTAAAGAGCATTTCAGAT
254 ATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGAT
**
2152155 TTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
318 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
2152220 CAAAATCCTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAGAAAAATACAAGGA
383 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * **
2152285 TCACATCTATCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATTTAAAAAAAATCTTGAACCGTA
448 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTA
*
2152350 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGC
513 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
* * *
2152415 TTAAGAGACCATTATATGAATTTACAAGCCATAAAAATGGTATTGGCATGGCAGAAATATGAAGA
578 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGA
* *
2152480 TGTGCCTAACCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGACG
643 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACG
* * * * *
2152545 TAGTGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAATTTCATTCCTAGT
708 CAGTGCCCACCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
* * ** * ** * * *
2152610 CTAAGACTGGACCGGACCGATTGTTGCGATAGCAAGATCGGTAGCAC-GTAGAAGGGGACCCGAT
769 CTAAGACT-GACCAGACTGAGGGTTGTGGCAGCAAGATCGGCAGCACACT-GAGGGGGACCCGAT
* * *
2152674 CGATCCCCGGCTTGCGCATCCTGCCCTTTTGGCCGGCTGAGCACCCGCAC
832 CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
2152724 GCTCGTTT-AGCGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
1 GCTCGTTTCA-TGGGTTGACTTAGGCATACGGAGTTCATT-CCAATCTAAGCAT-C-GAGTTCAT
* ** * * * *
2152788 TCCCAGTCTAAGATCAGACTGGACCGAGGGTTACAGCTGCACATGCTGGGCT-TAGACATGTGCT
62 TCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTCT-GGCATGTGCT
* *
2152852 GGTGCCACATTTTTTCTCGCCCGGGGCACCATCG-CTGGAGAACCTGACCG-ATGGCATTGGGGT
126 GGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTC-GGAGAACCTGACCGCA--GCATTGGGGT
* * *
2152915 TCCGACGATTATGGGGACGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
188 TCCGACGATTAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
2152980 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGAT
253 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
2153045 TTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCG
318 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
2153110 TAAAATCCTGTACACTTTGAGTTTCTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
383 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * **
2153175 TCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAAATCTTGAACCGTA
448 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTA
* * *
2153240 AAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
513 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
* * *
2153305 TTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGACAGAAATATCAAGA
578 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGA
* * * * *
2153370 TGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGTATCCCACCTCTCTGGTCGATG
643 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACG
* ** *
2153435 CAGTGCCCACCCGCCCGCTTGTTTCACCGGTTGGCTTAGGCATACGGAGTTGATTCCTAGTCTAA
708 CAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * * **
2153500 GACTGCACCAGACTAAGGGTCGTAGCAGTAGGAAT-GGCAGCACACTGAGAGGGACTAGATCGAT
773 GACTG-ACCAGACTGAGGGTTGTGGCAGCAAG-ATCGGCAGCACACTGAGGGGGACCCGATCGAT
* * * *
2153564 CCCCGGCTTGCGCATCCTACCCCTCTAGTCGACTGAGCGCCCGCAC
836 CCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
2153610 GTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAATCTAAGCAT-C-GAGTTCATT
2153675 CCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTCTGGCATGTGCTGG
63 CCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTCTGGCATGTGCTGG
* * * *
2153740 TGCTGCATTTCTTTTCACCCGGGGCACCATCGTCGGAGAACCTGACCAGCAGCATTGGGGTTTCG
128 TGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGAACCTGACC-GCAGCATTGGGGTTCCG
* *
2153805 ACGATTAGGGGG-CGGGGGGTGTGCGTACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATA
192 ACGATTAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
2153869 TTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTA
257 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
2153934 CAGGTTTGCTGCCAGTAGCTATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
322 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
2153999 ATCCTGTACA-TATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
387 ATCCTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
2154063 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAATTTTAAAAATATCTCAAACCATAAA
451 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAAATCTCAAACCGTAAA
** *
2154128 AAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTT
515 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
*
2154193 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATG
580 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* * *
2154258 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCTCTGGCCTACGTA
645 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGCA
* * * * *
2154323 GTGCCTACCTGTCCGCCCGTTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
710 GTGCCCA-C---CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
* * * * * * * * * *
2154388 AAGA-TCGA-AATGGACCGAAGCTTGTGGCAACAAGATTGGTAGAACGCTGAGGGGAACCCGATC
771 AAGACT-GACCA--GACTGAGGGTTGTGGCAGCAAGATCGGCAGCACACTGAGGGGGACCCGATC
* * *
2154451 GATCCCCGGCTTGCACATCCTGCCCCACTGGCCAGCTGAGCGCCCGCAC
833 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* ** **
2154500 GCTCATTTTGTTTGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG-ATCG-G---A--CC
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAATCTAAGCATCGAGTTCATTCC
* * * * * * * ** *
2154558 GA-ACTGAGGGT-TGAGGCAG--C-AGGATT--A-GT--AGCATGAGGGGAC-CCGGC--GAT-C
65 CAGTCT-AAGATCGGA-CCAGACCAAGGGTTGCAGGTGCA-CATGCTGGG-CTCTGGCATG-TGC
** * *** * ** * ** * *
2154609 CCG-GCTG-ATTTGTCTTTTTAACC----CA--GTCGTTTTGAG---TTGA-CTTAG-A-AGGAG
125 TGGTGCCGCATTT-T-TTTTCGCCCGGGGCACCATCG-TCGGAGAACCTGACCGCAGCATTGGGG
* * ** * * * * * * * *** * *
2154660 TTCACTCATG-TTAGATCGTCTGAGGGTTGTG-TCACATGCTGGGCTCGGGCATGTGCTGGTGCG
187 TTC-C-GACGATTAG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG---GTGCTGGTACT
* **** * * ** * * * * * * * * ** *
2154723 CGTATTTTTTTTGCCTGGGCACCATTGTCGC-GAGC-CACATCGGAGACCTGACCGACGGCATT-
246 TGGCCCTTATAT---T-GGC-CCCCTATCCCTCATCAAACCTC-GAGAACTCA-C-ACCCCCTTA
* * * * * * * * **
2154785 -TG-GCGTTTCGACGATTAGGGGGT-CGGGGTGTGC-ACACATGATGTGCGATGGTCCACTACTT
303 AAGAGCATTT-GA-GATT-----TTAC-AGGTTTGCTGC-CA-G-T-AGCCAT--T--A--AAGT
* * * * ** * ** ** *** * *
2154846 GACCCTTATATTGGCCCTCATTGCCTCATCAAA-CCTCA-AAGAACTCAC-ACCCCCTTAAAGAG
350 G--TCTGAAATGGGGACAC-TT---TTTTCAAATGGTCACAA-AA-TC-CTGTACACTT--CGAG
** * ** * * ** *
2154908 CATTT-G-AG-ATTTTACAGGTTTGCTGCAGTAGCC-ATTAAAGTGTCTGAATGGGGA-CATTTT
404 TTTTTAGCTGAATTTT-----TTTG-TGCA-T-GCCAACAAAAAT-AC--AA---GGATCACGTC
** * * **
2154968 TTTCAA--AT-GGTCACAAAA-TCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCC
455 TACCAAGTTTGGGGC-CAAAACTCCT-T---C-T-GA------A----AA-AATTT-T--A----
* * *** * * *
2155029 AAAAAAT-ACAAGGATCATGACTACCTAGTTTGGGGC-CAAATCCTCTGAAAAAATTA-AAAA-A
495 AAAAAATCTCAA--A-C-CG--TAAAAAGTTT----CAAAAAT-C-GTG-AAAAA-TAGAAAACG
* * *** * * * * * * ** * *
2155090 AATC-CCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAG--T-AGAAAACCAGTCATCT-TGCA-
546 AGTCGTCTTGCCAT-GAAA--CTT---CA-CATG-AAGGCTTAAG-GGACCA-T--TGTATGAAT
* * ** * * * * **
2155149 TGA-AA-CTCACATGAA-GGCCTT---AAGG--GACAT-TGTAAGAATTTACAAGCCATAAAAAC
599 TTACAAGC-CATAAAAATGGCATTGGCATGGCAGAAATATG-AAG-ATGT----GCC-TAAACCC
**** * ** *** * * ** * ** *
2155205 AGGCC-ATTGGCATGGCAGAAATATGAAGATGTGC-CTAAACCACCTAC-C-ACCCTATCGATCC
656 A--CCTACCACCCTATC-GATCCACG--GCT-TGCGC-ATCCCGCCT-CTCTGGCCGA-CG---C
** ** * * * * *** ** *** * *
2155266 ACG-GCTTACGCATCCCGTCTC-TTTGGCCGACGTAGACCCCGCTCGC-CCCCCCGCTCATTCTT
709 A-GTGCCCAC-CCGCCCG-CTCGTTTCGTCG--GTTGGCTTAG---GCATACGGAGTTCATTCCT
* * * * * * * **
2155328 CGGCT-TGGCT--TCAGGCAT-ACGGGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTG
766 AGTCTAAGACTGACCAGAC-TGA-GGGTT-GTGGC-AG-C--A-A---GATCGG-C--A-----G
* * * *
2155389 CGGAGCACCTGA-GGGGACCC-AGTCAATCCTCGG-TTGTGCAT-CTGCCTCTCTGGCCGGCT-A
812 C--A-CA-CTGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* *
2155449 GTG-CAGCAC
872 GCGCCCGCAC
** * *
2155458 ATTCGTTTCAT-TGTTGACTGTAGGCATACGGAGTCCATTCCAATCTAAAAGCATACGAGTTTTC
1 GCTCGTTTCATGGGTTGACT-TAGGCATACGGAGTTCATTCCAATCT--AAGCAT-CGAG--TTC
* * * *** * * * * *
2155522 -CTCCCAGTCTAGGATCAGATTGGATCGAGAGTTGCTGGTGCA-ATGCTGGGCT-TGGGCATCTG
60 ATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTCT-GGCATGTG
* * * * *
2155584 TTGGTGCCGTATTTTTTTTCGCCCGAGACACCATCGCCAGAGCATCACCGGAGAACCTAACCGAC
124 CTGGTGCCGCATTTTTTTTCGCCCGGGGCACCAT---C---G--T---CGGAGAACCTGACCG-C
* * *
2155649 AGCATTAGGGTTCCGGCGATTAGGGGGGCCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCT
177 AGCATTGGGGTTCCGACGATTA-GGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
2155714 GGTACTTGGCCCTTATATTGGCCCACTATCCCTCATC-AACCTCGAGAACTCACACCCCCTTAAA
240 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
2155778 GAGCATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
305 GAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
2155843 TTTTCAAAATGGTCACAAAATCCTGTACAC-ACGAGTTTTTAGCTAAACTTTTTTGTGCATGCGA
369 TTTTC-AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
2155907 ACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCGTTTTGAAAAAATTTTAAAA
433 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * *
2155972 AAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAGTTGAAAACGAGTCGTC-TGTCCATGA
498 AAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG-CCATGA
*
2156036 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCAT
562 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * ***
2156101 AGTAGAAATTTGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCATAACTTGCGCATCCC
627 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * * *
2156166 ATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTCGGCATACGGAG
692 GCCTCTCTGGCCGACGCAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * *
2156231 TTCATT-ATCAGTCTAAGATTGGACCGGA-TCGAGGGTTGTGGCAGCAGGATCGACAACACGCTA
757 TTCATTCCT-AGTCTAAGACT-GACCAGACT-GAGGGTTGTGGCAGCAAGATCGGCAGCACACTG
** ** * * * * *
2156294 AGGGGGACCC-AGTCGATCTTCGATTTGCACATCCTGCCCCTCTGGCCGGTTAAGCACCCACAC
819 AGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
2156357 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAG----TT-C-A--T-----TC-----C--T---
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAATCTAAGCATCGAGTTCATTCCC
* * * **
2156399 AGTCTAAGATCGCGATCAGACCAA--GTTGCGGGTGCACATGCTGGGCTCGGGCATAACGCTGGT
66 AGTCTAAGATCG-GACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTCTGGCAT-GTGCTGGT
** * * * * * * *
2156462 GCCATATTTTTTTTTGCCCGGGGCACAATCATCGGAGCATCGTCGGAGAACGACTGACGGTATTG
129 GCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAG-AAC--C--TG-AC--C-G-CAGCATTG
* ** * *
2156527 GGGTTTCGGGGATTGAGGGGGCCGGGGGGTGTGCACAC-T-ATGTGCAATGGGTGCTGGTACTTG
184 GGGTTCCGACGATT-AGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
2156590 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCTTTAAAGAGCATTT
248 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
2156655 GAGATTTTACAGGTTTGCTGCCTGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTTTCCAAAT
313 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * *** *
2156720 GGTCACAAAATCCTATACACTTTGAGTTTTTAGCTAAATTGTTTTGTGCATGCCCGTAAATATAC
378 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
2156785 AAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTAT-TGCAAAAATTTT-AAAAAATC-CTG
443 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCTGAAAAAATTTTAAAAAAATCTC-A
* * * *
2156847 AACCGTAAAAAGTTTCAAAAATCGTGAAACATAGAAAATGAGTTGTCTCGCCATGAAACTTCACA
506 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* ****
2156912 TGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAATAGAAAT
571 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * *
2156977 TTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTG
636 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * * * * *
2157042 GCCGGCGAAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTCGACATACGGAGTTCATTCCC
701 GCCGACGCAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
* * * * * * ** *
2157107 AGTCTAAGATCAGACCGGA-TCGAGCGTTGCGGCAGCAAGATCGACAACATGCTGAGGGAGACCC
766 AGTCTAAGA-CTGACCAGACT-GAGGGTTGTGGCAGCAAGATCGGCAGCACACTGAGGGGGACCC
* * *
2157171 GATTGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCAC
829 GATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
2157224 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA-T----TC----C--C-AG-----T--C
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAATCTAAGCATCGAGTTCATTCCC
* * *
2157270 A----AAGATCGAACCAGACCAAGGGTTAC-GAGTGCACATGCTGGGCTCGGGCAATGTGCTGGG
66 AGTCTAAGATCGGACCAGACCAAGGGTTGCAG-GTGCACATGCTGGGCTCTGGC-ATGTGCT-GG
* * **
2157330 TGCCGTGTATTTTTTTTTCGCCCGTGGCAACCAGTCGCCAGAGCATCGTCAGAGAAACCT-AAGG
128 TGCC--GCA-TTTTTTTTCGCCCGGGGC-ACCA-T---C---G--TCG---GAG-AACCTGACCG
* * * * * * *
2157394 CGGCATTAGGGTTCCAATGATTTGGGGGGCCGGGGGGGGTGTGC-CACAAGAATGTGTGAT-GGT
176 CAGCATTGGGGTTCCGACGA-TTAGGGGGCC--GGGGGGTGTGCGCACATG-ATGTGCGATGGGT
2157457 GCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACACCCCCTT
237 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
2157521 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG-GTCTGAAATGGGGACAC
302 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
2157585 TTTTTTTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
367 -TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
2157650 CAAC-AAAATACAAGGATCAAGGCTACCAAGTTTGGGGCCAAAACTCCTTCTGCAAAAAATTTTT
431 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTA
* * *
2157714 AAAAAATCT-AGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTTGTCTTGCCA
495 AAAAAATCTCA-AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
2157778 TGAAACTTCACATGGAGGCTCAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
559 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
2157843 CATGGTAGGAATATGAAGATGTACCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCAT
624 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
2157908 CCCGTCTTTCTGGTCTG-CGCAGTGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGTCTTAGGC
689 CCCGCCTCTCTGG-CCGACGCAGTG--C--CCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * ** ** * * *
2157972 GTACGAAGTTAATTCCTAGTCTAAGATTGGATCAGACCGAGGGTTACGATAGCAAGCTCAGCAAC
749 ATACGGAGTTCATTCCTAGTCTAAGACT-GACCAGACTGAGGGTTGTGGCAGCAAGATCGGCAGC
* * ** * * * * *
2158037 ACGCTGAGGGGGACCTGGCCGATCCCCGACTTGCACATTCTGCCCTTCTGGCCGGCTGAGCGCTC
813 ACACTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
*
2158102 GGAC
878 GCAC
* * * * *
2158106 GCTCATTTTATGGGTGGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-AATCTAAGC--ATCGAGTTCATT
* * *
2158171 CCCAGTCTAAGATCGGACCAGACCGAGGGTTG-AGGACGCACATGCTGGGCTCGGGCATGTGCTG
63 CCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGG-TGCACATGCTGGGCTCTGGCATGTGCTG
* * *
2158235 GTGCCGCA-TTTTTTTCGCCCAGGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGT
127 GTGCCGCATTTTTTTTCGCCCGGGGCACCAT---C---G--TCG---GAGAACCTGACCG-CAGC
* ** * * * *
2158299 ATTGGGGTTTCGGTGATTGATGGGCCCGGGGGGTGTGCACACATGATGTACGATGGGTGCTGGTA
180 ATTGGGGTTCCGACGATT-AGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
2158364 CTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCAT-GAGAGCTCACACCCCCTTAAAGAG
244 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAG
* * * * *
2158428 CATTTGAGATTTTACAGGTTTGCTTCTAGCAGCCATTAAAGTGTCTGAAATGAGGACTCTTTTTT
308 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
2158493 CAAATGGTCACAAAATCCTGTGCACCTCGAGTTTTTAGCTGAATTTTTTTGTCCATGCCCACAAA
373 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
2158558 AACACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAA-GTTAAAAAAATC
438 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
*
2158622 TCAAACTGTAAAAAGTTT-AAAACATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
503 TCAAACCGTAAAAAGTTTCAAAA-ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
2158686 CACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
567 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
* * * *
2158751 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCAACCCGTCTC
632 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
** * * * *
2158816 TCTAACCGGCGTAGTGCCCGCCCCCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGT
697 TCTGGCCGACGCAGT----GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * ** * * *
2158881 TCATTCCCAGTCTAAGTTCAGATGAGACTGAGGGTTGTGGCAGC-AGCATCGGTAACACATTGAG
758 TCATTCCTAGTCTAAG-ACTGACCAGACTGAGGGTTGTGGCAGCAAG-ATCGGCAGCACACTGAG
** * * ** * *
2158945 GGGGACCCGATCGATCCTAGGCTTGCGCATCTTGCCCCTCTGGTCGATTGAGCGCCCACAT
821 GGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
2159006 GCTCGTTTC-TGGGTTGAC-T-----TA--G-G--CA-T---A--T--G----GAGTTCATTCCC
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAATCTAAGCATCGAGTTCATTCCC
* * *
2159047 AGTCTCAGATCGGACCAGACCAAGGGTTGCAAGTGCACATGCTGGGCT-TCAGCATGTGCTGGTG
66 AGTCTAAGATCGGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTCT-GGCATGTGCTGGTG
* * * * * *
2159111 CCACATTTTTTTTTGCCTGGGGCACCATCATCGGAGCATCGTCGGATAACCTGACTAGAGTCATT
130 CCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAG-AAC--C---TGACC-G-C---AG-CATT
* * *
2159176 GGGGTTCCGGCGATTGGCGGGGCCGGCGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACT
183 GGGGTTCCGACGATTAG-GGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
2159241 TGGCCCTTAAATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCAT
246 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
2159306 TTGAGATTTTATAGGTTTGCAGCCAGTAGCAATTGAAGTGTCT-AGAATGGGGACACTTTTTTCA
311 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCA
*
2159370 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAA
375 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * * * *
2159435 TGCAAGGATCATGTGTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAGAATTTTAAGAAAATCCC
440 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC
* ** * *
2159500 AAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAATCATCTTGCCATGAAACTTCAC
505 AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
2159565 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGGCAGAAA
570 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
2159630 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
635 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * *
2159695 GGCC--CGCATAGTGCCCGCCCGTCCACCCGCTCATTTCGTCGGTTGGCTGAGGCATACGGAGTT
700 GGCCGACGC--AGTGCCCACCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
2159758 CACTCCCAGTCTAAGATCAGACCAAACCGGGGGTTGTGGCAGCAAGATCGGTAGCACACTGAGGG
759 CATTCCTAGTCTAAGA-CTGACCAGACTGAGGGTTGTGGCAGCAAGATCGGCAGCACACTGAGGG
* * * ** * *
2159823 GGACCTTG-CCGATCACTAGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCAG-CCGTAC
823 GGACC-CGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC-GCCCGCAC
*
2159882 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-T----TC----C--C-AG-----T---
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAATCTAAGCATCGAGTTCATTCCC
* * * * *
2159927 -G--TAAGATTGGACCAAACCGAGGGCTG-AGGGTGCACATGCTGGGCTC-GAGCATGTGTTGGT
66 AGTCTAAGATCGGACCAGACCAAGGGTTGCA-GGTGCACATGCTGGGCTCTG-GCATGTGCTGGT
* * * *
2159987 GCCACATTTTTTTTCGCCTGAGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCAT
129 GCCGCATTTTTTTTCGCCCGGGGCACCAT---C---G-----TCGGAGAACCTGACC-GCAGCAT
* * * ** *
2160052 TGGGGTTCCGGCGACT-GAGGGGCCGGGGGGTGTGTGCACGCGATGTGCGATGGGTACTGGTACT
182 TGGGGTTCCGACGATTAG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
2160116 TGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAACAT
246 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
2160181 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
311 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
2160246 ATGGTCACAAAATCCTGTACAC
376 ATGGTCACAAAATCCTGTACAC
2160268 GTCTACCAAG
Statistics
Matches: 6010, Mismatches: 1042, Indels: 999
0.75 0.13 0.12
Matches are distributed among these distances:
860 5 0.00
861 6 0.00
862 20 0.00
863 14 0.00
864 5 0.00
865 16 0.00
866 17 0.00
867 406 0.07
868 219 0.04
869 76 0.01
870 36 0.01
871 51 0.01
872 60 0.01
873 112 0.02
874 62 0.01
875 456 0.08
876 413 0.07
877 261 0.04
878 240 0.04
879 13 0.00
880 7 0.00
881 11 0.00
882 178 0.03
883 7 0.00
884 5 0.00
885 267 0.04
886 526 0.09
887 14 0.00
888 20 0.00
889 102 0.02
890 754 0.13
891 5 0.00
892 7 0.00
893 3 0.00
894 8 0.00
895 25 0.00
896 13 0.00
897 22 0.00
898 11 0.00
899 73 0.01
900 392 0.07
901 170 0.03
902 81 0.01
903 3 0.00
904 6 0.00
905 1 0.00
906 11 0.00
907 8 0.00
908 41 0.01
909 1 0.00
910 1 0.00
911 3 0.00
912 11 0.00
913 6 0.00
914 12 0.00
915 9 0.00
916 15 0.00
917 6 0.00
919 1 0.00
920 15 0.00
921 10 0.00
922 3 0.00
923 12 0.00
924 10 0.00
925 18 0.00
926 18 0.00
928 3 0.00
929 16 0.00
930 23 0.00
931 24 0.00
932 18 0.00
933 4 0.00
935 18 0.00
936 19 0.00
937 11 0.00
938 12 0.00
939 3 0.00
940 14 0.00
941 26 0.00
942 6 0.00
943 8 0.00
944 8 0.00
945 14 0.00
946 3 0.00
947 4 0.00
948 3 0.00
951 5 0.00
952 1 0.00
954 1 0.00
957 15 0.00
958 31 0.01
959 8 0.00
960 20 0.00
961 16 0.00
962 18 0.00
963 13 0.00
964 6 0.00
965 3 0.00
966 6 0.00
967 4 0.00
968 12 0.00
969 4 0.00
970 7 0.00
971 5 0.00
972 4 0.00
973 12 0.00
974 16 0.00
975 5 0.00
976 17 0.00
977 4 0.00
978 7 0.00
980 3 0.00
982 2 0.00
984 4 0.00
985 2 0.00
986 4 0.00
987 7 0.00
988 2 0.00
989 1 0.00
990 5 0.00
991 5 0.00
992 20 0.00
993 14 0.00
994 1 0.00
995 2 0.00
996 1 0.00
997 17 0.00
998 8 0.00
999 13 0.00
1000 12 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAATCTAAGCATCGAGTTCATTCCC
AGTCTAAGATCGGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTCTGGCATGTGCTGGTGC
CGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGAACCTGACCGCAGCATTGGGGTTCCGACGA
TTAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTT
CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGCAGTGCCC
ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGACTGACC
AGACTGAGGGTTGTGGCAGCAAGATCGGCAGCACACTGAGGGGGACCCGATCGATCCCCGGCTTG
CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
Found at i:2156884 original size:27 final size:26
Alignment explanation
Indices: 2156827--2156884 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
2156817 CTCCTATTGC
* * *
2156827 AAAAATTTTAAAAAATCCTGAACCGT
1 AAAAAGTTTAAAAAATCCTGAAACAT
* *
2156853 AAAAAGTTTCAAAAATCGTGAAACAT
1 AAAAAGTTTAAAAAATCCTGAAACAT
2156879 AGAAAA
1 A-AAAA
2156885 TGAGTTGTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.55, C:0.12, G:0.10, T:0.22
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCCTGAAACAT
Found at i:2158165 original size:26 final size:26
Alignment explanation
Indices: 2158129--2158181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2158119 GTGGACTTAG
*
2158129 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2158155 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2158181 G
1 G
2158182 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2160076 original size:876 final size:871
Alignment explanation
Indices: 2154692--2160267 Score: 6233
Period size: 875 Copynumber: 6.4 Consensus size: 871
2154682 AGGGTTGTGT
* * *
2154692 CACATGCTGGGCTCGGGCATGTGCTGGTGCGCGTATTTTTTTT-GCCTG-GGCACCATTGTCGCG
1 CACATGCTGGGCTCGGGCATGTGCTGGTGC-CGTATTTTTTTTCGCCCGAGGCACCATCGCCG-G
* * * * *
2154755 AGCCA-CATCGGAG-ACCTGACCGACGGCATTTGGCGTTTCGACGATT-AGGGG--GTCGGGGTG
64 AG-CATCGTCGGAGAACCTGACCGACGGCA-TTGGGGTTCCGGCGATTGAGGGGCCG-GGGGGTG
*** * * *
2154815 TGCACACATGATGTGCGAT-GGT-CCACTACTTGACCCTTATATTGGCCCTC-ATTGCCTCATCA
126 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TCCCTCATCA
*
2154877 AACCTCAAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCC
190 AACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
2154941 ATTAAAGTGTCTG-AATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
254 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
* * *
2155005 TTAGCTGAA-TTTTTTGTGCATGCC-A-AAAAATACAAGGATCATGACTACCTAGTTTGGGGCC-
319 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCA
* * * *
2155066 AAA-TCC-TCTGAAAAAATTAAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAGT
384 AAACTCCTTCTGAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAAT
* * *
2155129 AGAAAACCAGTCATCTTG-CATGAAAC-TCACATGAAGGCCTTAAGGGA-CATTGTAAGAATTTA
449 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG-CTTAAGGGACCATTGTATGAATTTA
*
2155191 CAAGCCATAAAAACAGGCCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCAC
513 CAAGCCATAAAAA-TGG-CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * ** *
2155255 CCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGCCGACGTAGACCCCGCTCGCCCCCCCGC
576 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCCCCCGC
* * * * * * *
2155320 TC-ATTCTTCGGCTTGGCTTCAGGCATACGG-GTTCATTCCTAGTCTAAGATCGGATCGGACTGA
640 TCGTTTCGTCGG-TTGGCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * *
2155383 GGG-T-T-GC-G---GA---G---CAC-CTGA-GGGGACCCAGTCAATCCTCG-GTTGTGCAT-C
703 GGGTTGTGGCAGCAAGATCGGCAACACGCTGAGGGGGA-CCAGTCGATCCTCGACTTGCGCATCC
* * * ** * * *
2155431 TGCCTCTCTGGCCGGCT-AGTGCAGCACATTCGTTTCAT-TGTTGACTGTAGGCATACGGAGTCC
767 TGCCCCTCTGGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACT-TAGGCATACGGAGTTC
* * * *
2155494 ATT-CCAATCTAAAAGCATACGAGTTTTCCTCCCAG-TCTAGGATCAGATTGGATCGAGAGTTG
831 ATTCCCAGTCT--AAG-AT-CG-G-------ACCAGACCGAGG----G-TT-GA--G-G-G-TG
* * * * *
2155556 CTGGTGCAATGCTGGGCTTGGGCATCTGTTGGTGCCGTATTTTTTTTCGCCCGAGACACCATCGC
1 C----AC-ATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGAGGCACCATCGC
* ** * * * *
2155621 CAGAGCATCACCGGAGAACCTAACCGACAGCATTAGGGTTCCGGCGATTAGGGGGGCCGAGGGGG
61 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATT-GAGGGGCCG-GGGGG
*
2155686 TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATC
124 TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
2155751 -AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTGCTGCCAGTAGC
189 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGC
*
2155815 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAATGGTCACAAAATCCTGTACAC-ACGAGT
253 CATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCCTGTACACTTCGAGT
* * * * *
2155879 TTTTAGCTAAACTTTTTTGTGCATGCGAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGC
317 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGC
* * * * * *
2155944 CAAAACTCGTTTTGAAAAAATTTTAAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAAA
382 CAAAACTCCTTCTG-AAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAA
* *
2156009 AGTTGAAAACGAGTCGTC-TGTCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
446 AATAGAAAACGAGTCGTCTTG-CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* * * * *
2156073 TTACAAGCCTTAAAAATGGCATTGGCATAGTAGAAATTTGAAGATGTGCCTAAACCCACTTACCA
510 TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*** * *
2156138 CCCTATCGATCCATAACTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCG---CCCGC
575 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCCGC
* ** ** * *
2156200 TCGTTTCGTCGGTTGGCTTCGGCATACGGAGTTCATTATCAGTCTAAGATTGGACCGGATCGAGG
640 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * * *
2156265 GTTGTGGCAGCAGGATCGACAACACGCTAAGGGGGACCCAGTCGATCTTCGATTTGCACATCCTG
705 GTTGTGGCAGCAAGATCGGCAACACGCTGAGGGGGA-CCAGTCGATCCTCGACTTGCGCATCCTG
* * * *
2156330 CCCCTCTGGCCGGTTAAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
769 CCCCTCTGGCCGGCTGAGC-GCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
2156395 TCCTAGTCTAAGATCGCGATCAGACC-A-AGTTGCGGGTG
833 TCCCAGTCTAAGATCG-GACCAGACCGAGGGTTGAGGGTG
** * * * * **
2156433 CACATGCTGGGCTCGGGCATAACGCTGGTGCCATATTTTTTTTTGCCCGGGGCACAATCATCGGA
1 CACATGCTGGGCTCGGGCAT-GTGCTGGTGCCGTATTTTTTTTCGCCCGAGGCACCATCGCCGGA
* * * *
2156498 GCATCGTCGGAGAA-C-GACTGACGGTATTGGGGTTTCGGGGATTGAGGGGGCCGGGGGGTGTGC
65 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGA-GGGGCCGGGGGGTGTGC
*
2156561 ACAC-T-ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
129 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
2156624 TCGAGAACTCGCACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCACTAA
194 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
2156689 AGTGTCTAAAATGGGGACACTTTTTCCAAATGGTCACAAAATCCTATACACTTTGAGTTTTTAGC
259 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
* * *** *
2156754 TAAATTGTTTTGTGCATGCCCGTAAATATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACT
324 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACT
** * *
2156819 CCTAT-TGCAAAAATTTT-AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAACATAGA
389 CCT-TCTG-AAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGA
* * * *
2156882 AAATGAGTTGTCTCGCCATGAAACTTCACATGAAGGCTTAAGGGACGATTGTATGAATTTACAAG
452 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
**** *
2156947 CCATAAAAATGGCATTGGCACAATAGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATC
517 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
2157012 GATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGAAGTGCCCGCCCG---CCCGCTCGTTTC
582 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCCGCTCGTTTC
* * * * * * *
2157074 ATCGGTTGGCTTCGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGCGTTGCGG
647 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGG
* * * * * *
2157139 CAGCAAGATCGACAACATGCTGAGGGAGACCCGATTGATCCCCGACTTGCGCATCCTGCCCCTCT
712 CAGCAAGATCGGCAACACGCTGAGGGGGACCAG-TCGATCCTCGACTTGCGCATCCTGCCCCTCT
* *
2157204 GGCCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
776 GGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
2157269 CAAAGATCGAACCAGACCAAGGGTT-ACGAGTG
840 CTAAGATCGGACCAGACCGAGGGTTGA-GGGTG
*
2157301 CACATGCTGGGCTCGGGCAATGTGCTGGGTGCCGTGTATTTTTTTTTCGCCCGTGGCAACCAGTC
1 CACATGCTGGGCTCGGGC-ATGTGCT-GGTGCC--GTA-TTTTTTTTCGCCCGAGGC-ACCA-TC
* * * * * *** *
2157366 GCCAGAGCATCGTCAGAGAAACCT-A-AGGCGGCATTAGGGTTCCAATGATTTGGGGGGCCGGGG
59 GCCGGAGCATCGTCGGAG-AACCTGACCGACGGCATTGGGGTTCCGGCGA-TTGAGGGGCC--GG
* *
2157429 GGGGTGTGC-CACAAGAATGTGTGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CC
120 GGGGTGTGCACACATG-ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
2157491 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
184 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
2157556 TAGCCATTAAAG-GTCTGAAATGGGGACACTTTTTTTCAAATGGTGACAAAATCTTGTACACTTC
249 TAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCCTGTACACTTC
* *
2157620 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC-AAAATACAAGGATCAAGGCTACCAAGTTTG
313 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTG
* * *
2157684 GGGCCAAAACTCCTTCTGCAAAAAATTTTTAAAAAAT-CTAGAACCGTAAAAAGTTTTAAAAATT
378 GGGCCAAAACTCCTTCTG--AAAAATTTTAAAAAAATCCCA-AACCGTAAAAAGTTTTAAAAATC
* * * *
2157748 GTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGGAGGCTCAATGGACCATTGTA
440 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* * * *
2157813 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGGAATATGAAGATGTACCTAAACCTACC
505 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
2157878 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGTCTGCGCAGTGCCCGTCCGCCC
570 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * * ** *
2157943 GCCCGCTCGTTTCGTCGGTTGTCTTAGGCGTACGAAGTTAATTCCTAGTCTAAGATTGGATCAGA
635 -CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
** ** * * * * * *
2158008 CCGAGGGTTACGATAGCAAGCTCAGCAACACGCTGAGGGGGACCTGGCCGATCCCCGACTTGCAC
699 CCGAGGGTTGTGGCAGCAAGATCGGCAACACGCTGAGGGGGACC-AGTCGATCCTCGACTTGCGC
* * * *
2158073 ATTCTGCCCTTCTGGCCGGCTGAGCGCTCGGACGCTCATTTTATGGGTGGACTTAGGCATACGGA
763 ATCCTGCCCCTCTGGCCGGCTGAGCGC-CGCACGCTC---------GT----TT---CGT--GG-
* * *
2158138 GTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
808 GTTGA---C---T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
**
2158203 AGGACG
866 AGGGTG
* *
2158209 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCC-AGGGCACCATCACCGGA
1 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGA-GGCACCATCGCCGGA
* * * * * *
2158272 GCATCGCCAGAGAACCTGACCGACGGTATTGGGGTTTCGGTGATTGATGGGCCCGGGGGGTGTGC
65 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGA-GGGGCCGGGGGGTGTGC
* *
2158337 ACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACC
129 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
2158402 AT-GAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCTAGCAGCCATTA
194 -TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
2158466 AAGTGTCTGAAATGAGGACTCTTTTTTCAAATGGTCACAAAATCCTGTGCACCTCGAGTTTTTAG
258 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
* * * * *
2158531 CTGAATTTTTTTGTCCATGCCCACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAC
323 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC
** * *
2158596 TCCTTCTGAAAAAAGTTAAAAAAATCTCAAACTGTAAAAAG-TTTAAAACATCGTGAAAAATAGA
388 TCCTTCTGAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAAA-ATCGTGAAAAATAGA
*
2158660 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAG
452 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
2158725 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
517 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * ** *
2158790 AATCCACAGCTTGCGCAACCCGTCTCTCTAACCGGCGTAGTGCCCGCCCCCCCGCCCGCTCGTTT
582 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-CCCGCTCGTTT
* * ** *
2158855 CGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGTTCAGATGAGACTGAGGGTTGTG
646 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTG
* ** * * * *
2158920 GCAGC-AGCATCGGTAACACATTGAGGGGGACCCGATCGATCCTAGGCTTGCGCATCTTGCCCCT
711 GCAGCAAG-ATCGGCAACACGCTGAGGGGGACCAG-TCGATCCTCGACTTGCGCATCCTGCCCCT
* ** *
2158984 CTGGTCGATTGAGCGCC-CACATGCTCGTTTC-TGGGTTGACTTAGGCATATGGAGTTCATTCCC
774 CTGGCCGGCTGAGCGCCGCAC--GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
2159047 AGTCTCAGATCGGACCAGACCAAGGGTTGCA-AGTG
837 AGTCTAAGATCGGACCAGACCGAGGGTTG-AGGGTG
* ** * * * **
2159082 CACATGCTGGGCTTC-AGCATGTGCTGGTGCCACATTTTTTTTTGCCTGGGGCACCATCATCGGA
1 CACATGCTGGGC-TCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGAGGCACCATCGCCGGA
* * * *
2159146 GCATCGTCGGATAACCTGACTAGA-GTCATTGGGGTTCCGGCGATTGGCGGGGCCGGCGGGGTGT
65 GCATCGTCGGAGAACCTGAC-CGACGGCATTGGGGTTCCGGCGATT-GAGGGGCCGG-GGGGTGT
* * * *
2159210 GCGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTAAATTAGCCCCCTATCCCTCATCAAA
127 GCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * * *
2159275 CCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCAGCCAGTAGCAATT
192 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
2159340 GAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
257 AAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
* * * *
2159404 AGCTGAATTTTTTTTTGCATGCCAACAAAAATGCAAGGATCATGTGTACCAAGTTTGGGGCCAAA
321 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAA
* * * * *
2159469 AATCCTTTTGAAAGAATTTTAAGAAAATCCCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATA
386 ACTCCTTCTGAAA-AATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATA
* *
2159534 GAAAACGAATCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
450 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
2159599 AGACATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
515 AGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
2159664 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCCGCATAGTGCCCGCCCGTCCACCCGCTCAT
580 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCCCCCGCTCGT
* * * *
2159729 TTCGTCGGTTGGCTGAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAAACCGGGGGTTG
644 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * * *
2159794 TGGCAGCAAGATCGGTAGCACACTGAGGGGGACCTTGCCGATCACTAG-CTTGCGCATCCTGCCC
709 TGGCAGCAAGATCGGCAACACGCTGAGGGGGACC-AGTCGATC-CTCGACTTGCGCATCCTGCCC
* *
2159858 CTCTGGCTGGCTGAGCAGCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
772 CTCTGGCCGGCTGAGC-GCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
2159923 CAGTGTAAGATTGGACCAAACCGAGGGCTGAGGGTG
836 CAGTCTAAGATCGGACCAGACCGAGGGTTGAGGGTG
* * ** *
2159959 CACATGCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTTTTCGCCTGAGGCACCATCGCCGGAG
1 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGAGGCACCATCGCCGGAG
* * * **
2160024 CATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGACTGAGGGGCCGGGGGGTGTGTGC
66 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGAGGGGCCGGGGGGTGTGCAC
** * *
2160089 ACGCGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTC
131 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
2160154 GAGAACTCACACCCCTTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
196 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
2160219 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
261 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
2160268 GTCTACCAAG
Statistics
Matches: 4030, Mismatches: 523, Indels: 307
0.83 0.11 0.06
Matches are distributed among these distances:
864 1 0.00
866 10 0.00
867 412 0.10
868 219 0.05
869 107 0.03
870 37 0.01
871 34 0.01
872 33 0.01
873 194 0.05
874 103 0.03
875 498 0.12
876 455 0.11
877 363 0.09
878 241 0.06
879 51 0.01
880 51 0.01
881 13 0.00
882 139 0.03
883 96 0.02
884 77 0.02
885 37 0.01
887 4 0.00
889 4 0.00
890 1 0.00
891 3 0.00
893 3 0.00
894 3 0.00
895 20 0.00
896 9 0.00
897 18 0.00
898 9 0.00
899 64 0.02
900 401 0.10
901 162 0.04
902 75 0.02
904 3 0.00
906 6 0.00
907 8 0.00
908 65 0.02
909 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGAGGCACCATCGCCGGAG
CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGAGGGGCCGGGGGGTGTGCAC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCC
TTCTGAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCG
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGC
AAGATCGGCAACACGCTGAGGGGGACCAGTCGATCCTCGACTTGCGCATCCTGCCCCTCTGGCCG
GCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCAGACCGAGGGTTGAGGGTG
Found at i:2160869 original size:33 final size:33
Alignment explanation
Indices: 2160827--2160894 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
2160817 TAAAAAGAAA
2160827 GAAAAGAATGATTGTTCTGGCGCAAGGAAAATT
1 GAAAAGAATGATTGTTCTGGCGCAAGGAAAATT
*
2160860 GAAAAGAATGATTGTTCTGGCGTAAGGAAAATT
1 GAAAAGAATGATTGTTCTGGCGCAAGGAAAATT
2160893 GA
1 GA
2160895 TACTTTCAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.40, C:0.07, G:0.28, T:0.25
Consensus pattern (33 bp):
GAAAAGAATGATTGTTCTGGCGCAAGGAAAATT
Found at i:2161016 original size:60 final size:59
Alignment explanation
Indices: 2160882--2161229 Score: 477
Period size: 60 Copynumber: 5.8 Consensus size: 59
2160872 TGTTCTGGCG
* * * *
2160882 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAA-TATTCTTTTGAAACTTTA-ATT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAAATTTATTTT
* *
2160939 TAGAGGAAGATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTT
1 TA-AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATT-ATTTTTTTGAAAATTTATTTT
*
2161000 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTTTAGAAATTTTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-TA-TTTTTTT-GAAA-ATTTATTTT
* * * *
2161063 GAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCT-TTTTTTTGAAATTTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TTATTTTTTTGAAAATTTATTTT
* *
2161122 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-TATTTTTTTGAAAATTTATTTT
*
2161182 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATAATTTTTTTGA
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGA
2161230 TTTTTATTTA
Statistics
Matches: 260, Mismatches: 20, Indels: 20
0.87 0.07 0.07
Matches are distributed among these distances:
57 2 0.01
58 31 0.12
59 53 0.20
60 108 0.42
61 19 0.07
62 4 0.02
63 43 0.17
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.45
Consensus pattern (59 bp):
TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAAATTTATTTT
Found at i:2161141 original size:122 final size:120
Alignment explanation
Indices: 2160882--2161229 Score: 496
Period size: 122 Copynumber: 2.9 Consensus size: 120
2160872 TGTTCTGGCG
* * * *
2160882 TAAGGAAAATTGATACTTTCAACTTTT-CCCTAAAA-ATA-TTCTTTTGAAACTTTAATTT-AGA
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTTTGAAATTTTATTTTGA-A
* *
2160943 GGAAGATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTT
65 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACT-ATTTTTTTGAAAATTTATTTT
2161000 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTTTAGAAATTTTTATTTTGA
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTTT-GAAA-TTTTATTTTGA
*
2161065 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCT-TTTTTTTGAAATTTTATTTT
64 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CTATTTTTTTGAAAATTTATTTT
*
2161122 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATAT-TTTTTTTTGGAAA-TTTATTTTTAA
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTTT-GAAATTTTATTTTGAA
*
2161185 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TAATTTTTTTGA
65 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACT-ATTTTTTTGA
2161230 TTTTTATTTA
Statistics
Matches: 211, Mismatches: 10, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
117 1 0.00
118 27 0.13
119 58 0.27
120 3 0.01
121 18 0.09
122 62 0.29
123 40 0.19
124 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.45
Consensus pattern (120 bp):
TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTTTGAAATTTTATTTTGAAG
GAAAATTGATACTTTCAACTTTTCCTCAAAAACTATTTTTTTGAAAATTTATTTT
Found at i:2161189 original size:182 final size:180
Alignment explanation
Indices: 2160883--2161227 Score: 545
Period size: 182 Copynumber: 1.9 Consensus size: 180
2160873 GTTCTGGCGT
*
2160883 AAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTAATTTAGAGGAAG
1 AAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTAATTTAGAGGAAA
*
2160948 ATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAATTGA
66 ATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAATTGA
2161013 TACTTTCAACTTTTCCCCAAAAATATATTTTTTTTAGAAATTTTTATTTTG
131 TACTTTCAACTTTTCCCCAAAAATA-ATTTTTTTTAGAAATTTTTATTTTG
* * *
2161064 AAGGAAAATTGATACTTTCAACTTTT-CCTCAAAAACCT-TTTTTTTGAAATTTTATTTTTA-AG
1 AAGGAAAATTGATACTTTCAACTTTTCCCT-AAAAA--TATTCTTTTGAAACTTTA-ATTTAGAG
* *
2161126 GAAAATTGATACTTTCAACTTTTCCCCAAAAATAT-TTTTTTTTGGAAATTTATTTTTAAGGAAA
62 GAAAATTGATACTTTCAACTTTTCCCCAAAAAT-TGATTTTTTTGAAAATTTATTTTTAAGGAAA
2161190 ATTGATACTTTCAACTTTTCCCCAAAAATAATTTTTTT
126 ATTGATACTTTCAACTTTTCCCCAAAAATAATTTTTTT
2161228 GATTTTTATT
Statistics
Matches: 152, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
180 3 0.02
181 39 0.26
182 104 0.68
183 6 0.04
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.45
Consensus pattern (180 bp):
AAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTAATTTAGAGGAAA
ATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAATTGA
TACTTTCAACTTTTCCCCAAAAATAATTTTTTTTAGAAATTTTTATTTTG
Found at i:2161253 original size:5 final size:5
Alignment explanation
Indices: 2161243--2161317 Score: 66
Period size: 5 Copynumber: 14.8 Consensus size: 5
2161233 TTATTTAAAG
*
2161243 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
* *
2161293 AAAGA- AAAGT AAAACA AAAAT AAAA
1 AAA-AT AAAAT AAAA-T AAAAT AAAA
2161318 AATAAAGGTA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
3 3 0.05
5 43 0.75
6 7 0.12
7 4 0.07
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:2162257 original size:22 final size:21
Alignment explanation
Indices: 2162232--2162312 Score: 55
Period size: 20 Copynumber: 4.0 Consensus size: 21
2162222 GAAAAAGAAA
2162232 AAAAAAATAATAACAGAT-AATC
1 AAAAAAATAAT-A-AGATAAATC
2162254 AAAAATAA-AATAAGATAAATC
1 AAAAA-AATAATAAGATAAATC
* * * *
2162275 CAAAAAAT-ATTACA-AGAT-
1 AAAAAAATAATAAGATAAATC
*
2162293 AAAAAAATAATAAAATAAAT
1 AAAAAAATAATAAGATAAAT
2162313 AAATTATAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
18 7 0.15
19 7 0.15
20 13 0.28
21 9 0.20
22 8 0.17
23 2 0.04
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (21 bp):
AAAAAAATAATAAGATAAATC
Found at i:2162258 original size:31 final size:31
Alignment explanation
Indices: 2162188--2162263 Score: 100
Period size: 33 Copynumber: 2.4 Consensus size: 31
2162178 AATCACAGCC
2162188 TCAAAAAAAGAAAAAAAATAATAATCAGATAA
1 TCAAAAAAA-AAAAAAAATAATAATCAGATAA
*
2162220 ACGAAAAAGAAAAAAAAAATAATAA-CAGATAA
1 TC-AAAAA-AAAAAAAAAATAATAATCAGATAA
*
2162252 TCAAAAATAAAA
1 TCAAAAAAAAAA
2162264 TAAGATAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
30 4 0.10
31 5 0.13
32 9 0.23
33 19 0.49
34 2 0.05
ACGTcount: A:0.74, C:0.07, G:0.07, T:0.13
Consensus pattern (31 bp):
TCAAAAAAAAAAAAAAATAATAATCAGATAA
Found at i:2162281 original size:44 final size:43
Alignment explanation
Indices: 2162233--2162316 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
2162223 AAAAAGAAAA
**
2162233 AAAAAATAATAAC-AGATAATCAAA-AATAAAATAAGATAAATCC
1 AAAAAAT-ATAACAAGATAAAAAAATAATAAAATAA-ATAAATCC
*
2162276 AAAAAATATTACAAGATAAAAAAATAATAAAATAAATAAAT
1 AAAAAATATAACAAGATAAAAAAATAATAAAATAAATAAAT
2162317 TATAATATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 4 0.11
43 22 0.61
44 10 0.28
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (43 bp):
AAAAAATATAACAAGATAAAAAAATAATAAAATAAATAAATCC
Found at i:2162307 original size:27 final size:27
Alignment explanation
Indices: 2162277--2162402 Score: 71
Period size: 27 Copynumber: 4.6 Consensus size: 27
2162267 GATAAATCCA
*
2162277 AAAAATATTACAAGATAAAAAAATAAT
1 AAAAATATTACAATATAAAAAAATAAT
* * *
2162304 -AAAATAAATA-AATTATAATATAATAAT
1 AAAAAT-ATTACAA-TATAAAAAAATAAT
* * *
2162331 AAATATATAACTATATAAATAAAATACAT
1 AAAAATATTACAATATAAA-AAAATA-AT
* * *
2162360 ATAAATATTAACAAAACAAAAAAA-AAT
1 AAAAATATT-ACAATATAAAAAAATAAT
*
2162387 AAAGATA-TACATATAT
1 AAAAATATTACA-ATAT
2162403 TAATACATAG
Statistics
Matches: 71, Mismatches: 20, Indels: 17
0.66 0.19 0.16
Matches are distributed among these distances:
25 3 0.04
26 10 0.14
27 28 0.39
28 11 0.15
29 12 0.17
30 7 0.10
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.27
Consensus pattern (27 bp):
AAAAATATTACAATATAAAAAAATAAT
Found at i:2162323 original size:19 final size:20
Alignment explanation
Indices: 2162299--2162353 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
2162289 AGATAAAAAA
2162299 ATAATAAAATAAATAAAT-T
1 ATAATAAAATAAATAAATAT
*
2162318 ATAATATAAT-AATAAATAT
1 ATAATAAAATAAATAAATAT
*
2162337 ATAACT-ATATAAATAAA
1 ATAA-TAAAATAAATAAA
2162354 ATACATATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 7 0.23
19 16 0.53
20 7 0.23
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAATAAAATAAATAAATAT
Found at i:2162471 original size:15 final size:16
Alignment explanation
Indices: 2162447--2162479 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
2162437 CCTAAAATAC
2162447 AAAAAAAATA-AAAAT
1 AAAAAAAATACAAAAT
*
2162462 AAAAATAATACAAAAT
1 AAAAAAAATACAAAAT
2162478 AA
1 AA
2162480 GAACCGAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAAAAAATACAAAAT
Found at i:2162646 original size:6 final size:6
Alignment explanation
Indices: 2162637--2162684 Score: 64
Period size: 6 Copynumber: 8.0 Consensus size: 6
2162627 CATTTTCATT
2162637 TTTTTG TTTTTTG TGTTTT- TTTTTG TTTTT- TTTTTG TTTTTG TTTTTG
1 TTTTTG -TTTTTG T-TTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
2162685 ACCAAAGCTC
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
5 9 0.24
6 19 0.50
7 10 0.26
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:2162657 original size:17 final size:17
Alignment explanation
Indices: 2162635--2162683 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 17
2162625 AACATTTTCA
2162635 TTTTTTTGTTTTTTGTGTT
1 TTTTTTTGTTTTTT-TG-T
2162654 TTTTTTTGTTTTTTT-T
1 TTTTTTTGTTTTTTTGT
2162670 TTGTTTTTGTTTTT
1 TT-TTTTTGTTTTT
2162684 GACCAAAGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.10
17 11 0.38
18 1 0.03
19 14 0.48
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (17 bp):
TTTTTTTGTTTTTTTGT
Found at i:2162660 original size:12 final size:11
Alignment explanation
Indices: 2162638--2162684 Score: 67
Period size: 11 Copynumber: 4.0 Consensus size: 11
2162628 ATTTTCATTT
2162638 TTTTGTTTTTTG
1 TTTT-TTTTTTG
2162650 TGTTTTTTTTTG
1 T-TTTTTTTTTG
2162662 TTTTTTTTTTG
1 TTTTTTTTTTG
2162673 TTTTTGTTTTTG
1 TTTTT-TTTTTG
2162685 ACCAAAGCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
11 15 0.45
12 15 0.45
13 3 0.09
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:2162669 original size:23 final size:24
Alignment explanation
Indices: 2162638--2162684 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
2162628 ATTTTCATTT
2162638 TTTTGTTTTTTGTGTTTT-TTTTTG
1 TTTTGTTTTTTGT-TTTTGTTTTTG
2162662 TTTT-TTTTTTGTTTTTGTTTTTG
1 TTTTGTTTTTTGTTTTTGTTTTTG
2162685 ACCAAAGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 4 0.18
23 14 0.64
24 4 0.18
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (24 bp):
TTTTGTTTTTTGTTTTTGTTTTTG
Found at i:2162819 original size:42 final size:42
Alignment explanation
Indices: 2162691--2162864 Score: 253
Period size: 42 Copynumber: 4.1 Consensus size: 42
2162681 TTTGACCAAA
* *
2162691 GCTCCTCTAAACAGAGGCTCAACGAC-TTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAA-ATAAATT
* * *
2162734 GCTCCTCTAAACAGAGGCACCATGA-ATTTGGAAATTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
2162775 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
* *
2162817 GCTCCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
2162859 GCTCCT
1 GCTCCT
2162865 TGACAAACAT
Statistics
Matches: 120, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
41 30 0.25
42 64 0.53
43 26 0.22
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
Found at i:2162848 original size:84 final size:84
Alignment explanation
Indices: 2162691--2162864 Score: 280
Period size: 84 Copynumber: 2.1 Consensus size: 84
2162681 TTTGACCAAA
*
2162691 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
*
2162756 TGAATTTGGAAATTAAATT
66 TGAATTTGGAAAGTAAATT
*
2162775 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAA-ATAAATTGCTCCTCTAAACAGAGGCACC
1 GCTCCTCTAAACAGAGGCACAACGAC-TTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACC
*
2162838 ATGACTTTTGGAAAGTAAATT
65 ATGA-ATTTGGAAAGTAAATT
2162859 GCTCCT
1 GCTCCT
2162865 TGACAAACAT
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
83 32 0.38
84 48 0.57
85 4 0.05
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (84 bp):
GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
TGAATTTGGAAAGTAAATT
Found at i:2163896 original size:8 final size:8
Alignment explanation
Indices: 2163884--2163957 Score: 98
Period size: 8 Copynumber: 9.0 Consensus size: 8
2163874 TTCACTTCTT
2163884 TTTTTTC-
1 TTTTTTCA
2163891 TTTTTTCA
1 TTTTTTCA
2163899 TTTTTTCA
1 TTTTTTCA
2163907 TTTTTTCA
1 TTTTTTCA
2163915 TTTTTTCA
1 TTTTTTCA
2163923 TTTTTTTCA
1 -TTTTTTCA
2163932 TTTTTTTCA
1 -TTTTTTCA
2163941 CCTTTTTT-A
1 --TTTTTTCA
2163950 TTTTTTCA
1 TTTTTTCA
2163958 AGCATAGTAT
Statistics
Matches: 62, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
7 13 0.21
8 25 0.40
9 18 0.29
10 6 0.10
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTTCA
Found at i:2175230 original size:26 final size:26
Alignment explanation
Indices: 2175194--2175246 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2175184 CCGATCTGAT
2175194 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
2175220 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
2175246 C
1 C
2175247 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:2182006 original size:26 final size:26
Alignment explanation
Indices: 2181977--2182032 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
2181967 ATGATCCGAT
* *
2181977 CTTACACTGGGATTGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
2182003 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
2182029 CTTA
1 CTTA
2182033 TGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:2182902 original size:26 final size:26
Alignment explanation
Indices: 2182864--2182914 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2182854 CTGGTCTGAT
2182864 CTTACACTAGGAATGAACTCCGTATA
1 CTTACACTAGGAATGAACTCCGTATA
* *
2182890 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTAGGAATGAACTCCGTAT
2182915 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATA
Found at i:2183063 original size:887 final size:885
Alignment explanation
Indices: 2181248--2183590 Score: 3209
Period size: 887 Copynumber: 2.6 Consensus size: 885
2181238 CTAATACCGT
* * * * *
2181248 AACCCTCGGTCTGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA-
1 AACCATCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA-CAAG
** * *
2181312 ACGAGCGGGCGAGCGGGCACTACGTTGGCCAGAGAGACGGGATGTGTAAGCCGTGGATCGATAGG
65 ACGAGC--GCG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * * * *
2181377 GTGGTATGTGGTTTACGTACATCTTCATATTTCTGCCACGCCAATACCATTTTTATGGCTTATAA
127 GTGGTAAGTGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
* *
2181442 ATTCATACAATGGTCCCTTAAGCCTTCATGTGATGTTTTATGGCAAGACGACTCGTTTTCTATTT
192 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
2181507 TTCATAATTTTTGAAATTTTTTATGGTTCAGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTCGG
257 TTCATGATTTTTGAAAATTTTTACGGTTCA-GATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGG
* * *
2181572 CCCCAAACTTGGTAGATGT-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAA
321 CCCCAAA----GTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAA
* *** * * * *
2181636 CTCGAAGTGGATC-GATAGGGTGACCATTTGAAAACAGTGTCTCTATTTGAGACACTTTAATGGC
382 CTCGAAGTGTA-CAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
2181700 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGACGGTGTCAGTTCTCGAGGTTTGAT
446 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAAGGTGTGAGTTCTCGAGGTTTGAT
*
2181765 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCC
511 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * * *
2181830 CCCCGTCCCCCAATTGTCGGACCCCAATGCCGCTGGTCAGGTTCTCCGATGATGCTCCGGCGATG
576 CCCCG-CCCCCAATCGTCGGACCCCAATACCGCCGGTCAGGTTCTCCAACGATGCTCAGACGATG
* *
2181895 GTGCCCCGGGTGAAAAAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGTAAC
640 CTGCCCCGGGTGAAAAAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAAC
* * *
2181960 CCTTGATATGATCCGATCTTACACTGGGATTGAACTCCGTATGCTTAGACTGGGAATGAACTCCA
705 CCTTGATATGATCCGATCTTACACTAGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCA
* * * * *
2182025 TATGCTTATGTCAACCCATGAAACGAACGTGCGGGTGCTCAGCCGACCAGAGGGGCAGGATGCGC
770 TATGCCTAAGTCAACACATGAAACGAACGTGCGGGCGCTCAGCCGACCAGAGGGGCAAGATGCGC
* *
2182090 AAGCTGGGGATCGATCGGGCCCCCCCTTACGTGCTGCTGATCTTGCTGCGC
835 AAGCTGGGGATCGATCGGGCCCCCCCTGACGTGCTGCTGATCCTGCTGCGC
* * * *
2182141 AACCCTTGGTCTGATCCGATCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCGACAAGA
1 AACCATCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAGA
* ****
2182206 CGAGCGTACGGTCGGGCACTACGCCAGCCAGAGAGGTAAGATGCGCAAGCCGTGGATCGATAGGG
66 CGAGCG--CGG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
2182271 TGGTAAGTGGCTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGATTGTAA
128 TGGTAAGTGG-TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
*
2182336 ATTCATACAATGGTCCCTTAAGCCTTCATGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
192 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
2182401 TTCACGA-TTTTCAAAATTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCAAAAGGAGTTTTGG
257 TTCATGATTTTTGAAAATTTTTACGGTTC-AGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGG
*
2182464 CCCCAAAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTTG
321 CCCCAAAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCG
*
2182529 AAGTGTACAGGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
386 AAGTGTACA-GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
** * *
2182594 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGA
450 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAAGGTGTGAGTTCTCGAGGTTTGATGAGG
* ** *
2182659 GATAAGGGGTGAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCA
515 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-
*
2182724 C-CCCTCAATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCAACGATGCTCAGACGATGCTG
579 CGCCCCCAATCGTCGG-ACCCCAATACCGCCGGTCAGGTTCTCCAACGATGCTCAGACGATGCTG
* * *
2182788 CCTC-GG-GCAAAAAAAATAC-G-ACAGAGCACATGCCCGAGCCCAGCATGTGCACGC-GCAACC
643 CCCCGGGTGAAAAAAAAATACAGCAC-CAGCACATGCCCGAGCCCAGCATGTGCAC-CTGCAACC
* * * * *
2182848 CTTGGTCTGGTCTGATCTTACACTAGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGT
706 CTTGATATGATCCGATCTTACACTAGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCAT
* * *
2182913 ATGCCTAAGTCAACACATGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCAAGATGCGCA
771 ATGCCTAAGTCAACACATGAAACGAACGTGCGGGCGCTCAGCCGACCAGAGGGGCAAGATGCGCA
*
2182978 AG-TCGGGGATCGATCGGGTCCCCCC-GACGTGCTG-TCGATCCTGCTGCGAC
836 AGCT-GGGGATCGATCGGGCCCCCCCTGACGTGCTGCT-GATCCTGCTGCG-C
* * * *
2183028 AACCATCGAT-TCGATCCGATCTTAGACTAGGAATGAAATCCATATGCCTAAGCCAA---ACGAG
1 AACCATCGGTCT-GATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAG
* *
2183089 -C-AG-GCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGT
65 ACGAGCGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
2183151 GGTAGGTAGGTTTAGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAA
129 GGTAAGT-GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAA
*
2183216 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
193 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
2183281 TCATGATTTTTGAAACTTTTTACGGTTCCAGATTTTTTCAAATTTTTTTCAGAAGGAGTTTTGGC
258 TCATGATTTTTGAAAATTTTTACGGTT-CAGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGC
* * *
2183346 CCCACACTTGGTAGACGTGATCCTTTTGTTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAC
322 CCCA-A---AGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAC
* * *
2183411 TCAAAGTGTACATGA-TTTGTGACCATTTGAAAAAAGTCTCCCCATTTTAGACACTTTAATGGCT
383 TCGAAGTGTACA-GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
2183475 ATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAAGGTGTGAGTTCTTGAGGTTTGATG
447 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAAGGTGTGAGTTCTCGAGGTTTGATG
2183540 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
512 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
2183591 ACTATGCCGG
Statistics
Matches: 1289, Mismatches: 135, Indels: 61
0.87 0.09 0.04
Matches are distributed among these distances:
879 173 0.13
880 31 0.02
881 30 0.02
882 3 0.00
883 1 0.00
884 156 0.12
885 66 0.05
886 23 0.02
887 218 0.17
888 21 0.02
889 66 0.05
890 209 0.16
891 2 0.00
892 33 0.03
893 142 0.11
894 115 0.09
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (885 bp):
AACCATCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAGA
CGAGCGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAAGTGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
TGATTTTTGAAAATTTTTACGGTTCAGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
AAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGAAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCC
AATCGTCGGACCCCAATACCGCCGGTCAGGTTCTCCAACGATGCTCAGACGATGCTGCCCCGGGT
GAAAAAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAACCCTTGATATGA
TCCGATCTTACACTAGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCATATGCCTAAGT
CAACACATGAAACGAACGTGCGGGCGCTCAGCCGACCAGAGGGGCAAGATGCGCAAGCTGGGGAT
CGATCGGGCCCCCCCTGACGTGCTGCTGATCCTGCTGCGC
Found at i:2184264 original size:26 final size:25
Alignment explanation
Indices: 2184235--2184286 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
2184225 CCGATCCGAT
2184235 CTTACACTGGAAATGAACTCCGTATG
1 CTTACACTGGAAATGAACT-CGTATG
* *
2184261 CTTAGACTGGGAATGAACTCGTATG
1 CTTACACTGGAAATGAACTCGTATG
2184286 C
1 C
2184287 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTACACTGGAAATGAACTCGTATG
Found at i:2185176 original size:26 final size:26
Alignment explanation
Indices: 2185125--2185177 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2185115 CTGGTCTGAT
* *
2185125 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
* *
2185151 CTTAGACTAGGAATGAACTTCATATG
1 CTTACACTAGGAATGAACTCCATATG
2185177 C
1 C
2185178 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:2185859 original size:896 final size:888
Alignment explanation
Indices: 2183598--2194452 Score: 5874
Period size: 897 Copynumber: 12.0 Consensus size: 888
2183588 TCAACTATGC
* *
2183598 CGGCCAGAGAGGTGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
2183663 TCTTATTTATGCCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCGTTAAGC
66 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCC-TTAAGC
* *
2183728 CTTCATGTGAAGTTTTATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
130 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* *
2183793 CGGTTCAAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
195 CGGTTC-AGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
* * * * ** ***
2183858 CTTGTA-TTTTGTTGGCATGCATAAAAAAATTCAACTAAAAGCTCGAAGTGGA-TTGATAGGGTG
259 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* * *
2183921 ACCATTTAAAAAAAGTGT-CTCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
324 ACCATTTGAAAAAAGTGTCCT-CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
2183985 TCTCAAATGCTCTTTAA-GGGG-GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
388 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
2184048 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCG-CCCCCCAATCGGCTG-A
453 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAC-CCCCCCGTCCCCCCAATCGTC-GAA
* **
2184111 ACCCTAATGTCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGTCCCGGGTGAAAAAAAA
516 ACCCTAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCCAG-GAAAAAAAA
* * * *
2184176 TTC-GCACACAGCTACATGCCGAGCCCAGCATGTGCA-CCGTAACCTTC-GTCCGATCCGATCTT
579 TACGGCAC-CAGC-ACATGCCGAGCCCAGCATGTGCACCCATAACCCTCGGTCCGATCTGATCTT
*
2184238 ACACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCGTATGCCTAAGTCAACCCAC-
642 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACG
* * * * *
2184301 AAACGAGCGTGC-GGTCGCTCAGTCAGG-CAGAGGAGG--TGATTCCACAAG-CGGGATCGCGTC
707 AAATGAGCGTACAGG-CGCTCAG-CCGGCCAGAGG-GGCAGGA-TGCACAAGCCGGGATCG-GTC
* * * * *
2184361 GGGTCCCCCCCT-TGATGCT-GCTACTCCTGCTACC-GAACCCTTGG-TCTGATC-CAACTTA-A
767 GGGT-CCCCCCTGT-ATGCTACCGA-TCCTGCTACCACAACCCTTGGTTCTGATCTGATCTTAGA
* *
2184420 CTGGAATGAACTCCGTAATGCCTAAGCCAACGACGAAACAACGAGCCGGGCGGTGGACTACGT
829 CTGGAATGAACTCCGT-ATGCCTAAGCCAACGACGAAACGACGAG-CGGGCGG-GCACTACGT
*
2184483 CGGCCAGAGA-GCGGAGAT-CGCAA-TCGTGGATCGAATA---TGGTA-GTGGG-TTA-GCACAT
1 CGGCCAGAGAGGCGG-GATGCGCAAGCCGTGGATCG-ATAGGGTGGTAGGTGGGTTTAGGCACAT
** *
2184539 C-TCATA-TTCTATCATGCCAATGCCA-TTTTATGGC-TG-AAATTTCAATACAATGGTCCCTTA
64 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAA-TTC-ATACAATGATCCCTTA
* *
2184599 AGCCTTTATTGTGAAGTATTCATGGCCAAGACGACTCGTTTTCTATTTTTCAATGATTTTTAGCA
127 AGCCTTCA-TGTGAAGT-TTCATGG-CAAGACGACTCGTTTTCTATTTTTC-ACGATTTTT-G-A
* ** *
2184664 AACCTTTTACGGGTT--GATTTTTTTTTAATTTTTTCGGAAA-GAGTTTTGGCCCACCAAACTT-
186 AACTTTTTAC-GGTTCAGATTTTTTTAAAATTTTTTC-AAAAGGAGTTTTGG-CC-CCAAACTTG
* * * *
2184725 GTAGACGTGAATCCTTG-AGTTTTTGTTGGGTATGC-CACAAAAAATTTAGCTAAAAACTGCGAC
247 GTAGACATG-ATCCTTGTA-TTTTTGTT-GGCATGCACA-AAAAAATTCAGCTAAAAACT-CGAA
* *
2184788 GTGGTATC--GATTTAGGTGACCATTTGAAAAAAGTGTCC-CAATTCAGAACACTTTAATGGCTA
307 GT-GTA-CAGGATTT-TGTGACCATTTGAAAAAAGTGTCCTCATTTCAG-ACACTTTAATGGCTA
*
2184850 CTGGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGATGTGAGTTCTCGAGGTTTGATG
368 CTGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
2184914 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCAAT-GCACATCATGTGCGCACCCCC
432 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCACACCCCC
** *
2184978 CCGTCCCCCCAATCGTCGAAACCCTAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCAACGATG
496 CCGTCCCCCCAATCGTCGAAACCCTAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATG
* *
2185043 GTACCCCAGGCAAAAAAAAAATACGGCACCAGCGCATGCTCGAGCCCAGCATGTGCACCCATAAC
561 GTGCCCCAGG---AAAAAAAATACGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCATAAC
* * * * * *
2185108 CTTAGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCA
622 CCTCGGTCCGATCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCG
* *
2185173 TATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCTCAGCTGGCCAGAGGGGCAGGACGCAC
687 TATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCAC
* * ** *
2185238 AAGCCGGGGATCGGTCAGGTCCCCCCTGCATGCTACCGATCCAACTACCACCA-CCTTCGGTTC-
752 AAGCC-GGGATCGGTCGGGTCCCCCCTGTATGCTACCGATCCTGCTACCACAACCCTT-GGTTCT
*
2185301 GATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAACGAGCGAGCGGG
815 GATCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGA-CGAGCGGG
2185366 CGGGCACTACGT
877 CGGGCACTACGT
* ** *
2185378 CGGCTAGAGAGGCGGGATGCGCAAGCTATGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
2185443 TCATATTTCTGCTATGCCAATGCCATTTTTATGGCTTGAAAATTCCTACAACGATCCCTTAAGCC
66 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCC
* *
2185508 TTCATGTGAAGTTTCATGGCAAGACAACACGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
131 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* **
2185573 GGTTCAAGAATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTCTTAGACATGATCC
196 GGTTC-AGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
* *
2185638 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAGGATTTTGTGT
260 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* *
2185703 CCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAACAAACTTGTAAAATC
325 CCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
2185768 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTCTGATGAGGGATAGGGGGCCAATATAAAG
390 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
2185833 GTCAAGTTCCAGCACCCATCGCACATCATGTGCGCACCCTCCCCG-CCCCCCAATCGTC-AGAAC
455 GCCAAGTACCAGCACCCATCGCACATCATGTGCACACCC-CCCCGTCCCCCCAATCGTCGA-AAC
* * * ** *
2185896 CCTAATGCCGCCGATCATGTTCTCCGACGATACTCC-A-GTAATGGTGCCCTGGGTGAAGAAAAA
518 CCTAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACG--ATGGTGCCC-CAG-GAAAAAAAA
* * * * * * * * *
2185959 TGCGGCACCAGCACATGCCTGAGCCCAACTTCTACAGCCACAACCCTCGATCCGGTCTGATCTTA
579 TACGGCACCAGCACATGCC-GAGCCCAGCATGTGCACCCATAACCCTCGGTCCGATCTGATCTTA
* * *
2186024 CACTGGGAATGAACTCCATATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
643 CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
* * * * * * *
2186089 ACTGAGCGTACGGGCGCTTAGTCGACCAGAGGGGGAACAGGATGCAC-AGCTGGGGATCGAGCCG
708 AATGAGCGTACAGGCGCTCAGCCGGCCAGA-GGGG--CAGGATGCACAAGC-CGGGATCG-GTCG
* * * ** *
2186153 GGTCCCCCCTGTTGTGCTACCTGATCCTTGCATGCCGCAAACCCTT-CATCTG-CCTTGATCTTA
768 GGTCCCCCCTG-TATGCTACC-GATCC-TGC-TACCAC-AACCCTTGGTTCTGATC-TGATCTTA
*
2186216 GACCCTGGGAATGAAACTCCGTATGCCTAAAGCCAACCG-CTGAAACGACG-GC-GGTGGGCAGC
827 GA--CT-GGAATG-AACTCCGTATGCCT-AAGCCAA-CGAC-GAAACGACGAGCGGGCGGGCA-C
2186278 TACGT
884 TACGT
* *
2186283 CGGCCAGAGAGGTGGGATGCGGTAAGCCGTGGATCGATAGGGTGGTAGGTGGCGTTTAGGCACAT
1 CGGCCAGAGAGGCGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAGGTGG-GTTTAGGCACAT
*
2186348 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATGAATG-TCCCTTAA
64 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA-CAATGATCCCTT-A
2186412 AGCCTTCATGTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGGATTTTTGAAAAC
127 AGCCTTCATG-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-GATTTTTG-AAAC
* *
2186477 TTTTTACGGTTCGGATTTTTTTTAAAATTTTTTTC-AGAGGAGTTTTGGCCCCAAACTTGGTAGA
189 TTTTTACGGTTCAGA-TTTTTTTAAAA-TTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
2186541 CATGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATCAAG
252 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA-CAGG
*
2186605 ATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTGAGACA-TTTAATGGCTACTGGCAGCAAACC
316 ATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
2186669 TGTAAAATCTGAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
381 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
2186734 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCTGT-CCCCCAAT
446 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAC-CCCCCC-GTCCCCCCAAT
* * * * * * *
2186798 TGCCGGAACCCTAATGTCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGAGTGA
509 CGTCGAAACCCTAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-AG-GA
* * * * *
2186863 AAAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGATCCGATCC
572 AAAAAAATACGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCATAACCCTCGGTCCGATCT
* ** *
2186928 GATCTTACACTGGGAATGAACTCCGTATACTTAGACTCAGAATGAACAAT-GTATGCCTAAGTCA
636 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TTCGTATGCCTAAGTCA
* * * * * *
2186992 ACCCATGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCAGGGATCG
700 ACCCACGAAATGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCC-GGGATCG
* * * * * * *
2187057 ATCGGGGCCCCCCCTATGTGCTACTGATCCTGCTGCCACAACCCTTGGTTCAG-TCTGATCTTAG
764 GTC-GGGTCCCCCCTGTATGCTACCGATCCTGCTACCACAACCCTTGGTTCTGATCTGATCTTAG
* * * * * * ***
2187121 ACCCGGAATGAACTTCGTAAGCCTAAGCCAACCGACGAAACGATTGGGCGGGCGAGCACTATAC
828 A-CTGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGA-CGAGCGGGCGGGCACTACGT
*
2187185 CGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
2187250 TCATATTTCTGCCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAAT-AGTCCCTTAAGC
66 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGA-TCCCTTAAGC
* * *
2187314 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTGTCACAATTTTTAAAACTTTTTA
130 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
2187379 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAA---GGTAGACGTGATC
195 CGGTTC-AGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
* * *
2187441 CTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTCTGTG
259 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* * *
2187506 ACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTATTGGCTACTGGCAGCAAACCTGTAAAAT
324 ACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * * *
2187571 CTCAAATGCTCTCTAAGGGGGTGTCAATTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAG
389 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
2187636 GGCCAAGTACCAGCACCCATCGCACACCATGTGTGCACACCACCCCCTTGCCCCCCAATCATCGG
454 GGCCAAGTACCAGCACCCATCGCACATCA--TGTGCACACC-CCCCCGT-CCCCCCAATCGTCGA
* * * * * * * *
2187701 AACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCTGATGATGGTGCCCCGAGGGAAAAAAA
515 AACCCTAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-AGGAAAAAAAA
* * *
2187766 TATGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCACAACCCTCGGTTCGATCTGATCTTA
579 TACGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCATAACCCTCGGTCCGATCTGATCTTA
* * **
2187831 CACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAA
643 CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
*** * * * *
2187896 AATGAGCGCGTAGGTGCTTAGCCGGCCAGAGGGGCTGGATGCACAAGCCGGGATCGATCGGGTCC
708 AATGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGATCGGTCGGGTCC
* *** * *
2187961 CCCCTGTGTGCTGTTGATCCTGCTGCCATAACCCTCAATCCGGTCTAATCTTACACTAGGAATGA
773 CCCCTGTATGCTACCGATCCTGCTACCACAACCCT---T--GG-------TT---C------TG-
* * * * * *
2188026 ACTCTGTATGCTTAGATTGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
816 A-TCTG-AT-CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGA-CGAGCG
**
2188091 GGCGTTCA--AC--
875 GGCGGGCACTACGT
** * * * * *** ** ** * *
2188101 CGGCCAGAGAGGCAAGATGCACAAGCCG-AGACCGATCA-AGTCCCCACATGCATGCT-GTCA-A
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT-AGGGT-GGTAGGTGGGT-TTAGGCACA
* * ** * * ** * * * * * * ** *
2188162 TCTTGC-TACTGCAACCCTTGGTTCGGT-CTGA-TCTTA-GACTAG-GAA-TGA-ACTCTGTATG
63 TCTT-CATATTTC-TGCCAT-G-CCAATGC-CATTTTTATGGCTTGTAAATTCATACAATG-ATC
* **** *** ** * * **** * *
2188220 CC-TAAGCCAATCGACAAAACGAGCGGACGGGCGGGCACTACACCGGC-CAGAGAGGCGGGA-TG
122 CCTTAAGCC-TTC-ATGTGA--AG-TTTC---ATGGCA--AGA-CGACTC-G-TTTTC--TATTT
** ** * *** ** * * ** * * * *
2188282 CGCAAGCCG-TAGATCGATAGGGTGGTAGGTGGGTTTAGGCA-CATCTTCATATTTTTGCAGTAC
172 TTC-A--CGAT-TTTTGA-AACTTTTTA---CGGTTCA-G-ATTTTTTTAAAATTTTTTCA--A-
* * *** ** * * *
2188345 CAATGCCATTTTTATGGCTTGTAAA-TTCATATA-ATGGTCCCTTAAGCCTTCATGTGAAGTTTC
224 -AA-G-GA-GTTT-TGGC-CCCAAACTTGGTAGACATGAT-CCTT--G---T-AT-T----TTTG
* * *** *** * * ** *
2188408 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGT-T-CAAGATTTT
271 TTGGCATG-C-A--C----AAAAAAATTCA-G---CTAAAAAC--TCGA-AGTGTACAGGATTTT
* * ** *** ** * *** **
2188471 TTTAAAATTTTTTCAGAAGGAATTTTGTTCC-CAAACTTGGTACACATGATTCTTTTATTTTTTT
321 GTGACCA---TTT--GAA--AAAAGTG-TCCTC--A-TT--T---CA-GACACTTTAATGGCTAC
** * ** *
2188535 TGGCATGCACAA---AAAAAATCAGCTAAAAACTC--GAA----GTGT-A-----C-AGGATTT-
369 TGGCA-GCA-AACCTGTAAAATC-TC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTG
** ** * ** * ** ** * *
2188583 -TGAGTCCAT-----TTCAA-AAAACTGTCCCCA-TTTCAGACACTTTAATGGC-TA-C-TG-GC
429 ATGAG-GGATAGGGGGCCAATATAA--GGGCCAAGTACCAG-CAC--CCATCGCACATCATGTGC
* ** * ** * * ** * *
2188636 AGTA--AACCTGT----AAAATC-TC-AAATGCTCTTTAAGGGGGT-G-TGA-GTTCT-CGAGGT
488 A-CACCCCCCCGTCCCCCCAATCGTCGAAA--C-C-CTAATGCCGTCGATCAGGTTCTCCGACG-
* * * * * * * * * * *
2188689 TTGAT--GAGGGATAGG-G-----GGCAAATATA-AGGGC-CAAGTACCA-GAACCCATCACACA
547 ATGCTCCGA-CGAT-GGTGCCCCAGGAAAAAAAATACGGCACCAGCA-CATG--CCGAGC-C-CA
* * *** * * ** * ** *
2188743 TCATGTGCACACACCCCCCCCGCCTCC---CCAATC--GC-C--GGAACCCCAA-TACCGT-TGG
605 GCATGTGCACCCATAACCCTCG-GTCCGATCTGATCTTACACTGGGAA--TGAACT-CCGTATGC
* * * * * * *** * * *
2188798 TCAGGTTCTCCGGCG-ATG--CTCCG---G-CGATGGTGCCACGGGCGAAAT-A---AAAATGCG
666 TTA-G-ACT--GG-GAATGAACTTCGTATGCCTA-AGT-CAACCCACGAAATGAGCGTACAGGCG
* * * * * * *
2188852 ----G-C-ACC--A---GCA-CATGCCCAAGCCCGGCAT--GT---G---CACCTGTA-AC-CCT
724 CTCAGCCGGCCAGAGGGGCAGGATGCACAAG-CCGGGATCGGTCGGGTCCCCCCTGTATGCTAC-
* * * ** * *** * * **
2188895 CGGTCCGGTCTGATC-TTACAC-TGGGAATGAACTCCGTATGCTTAGACTAGTAATGAACTCTAT
787 CGATCCTG-CT-ACCACAACCCTTGGTTCTG-A-TCTG-AT-CTTAGACT-GGAATGAACTCCGT
* * *** * * *
2188958 ATGCCTAAGTCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGG-ATTGATCGGGT
845 ATGCCTAAG-C-CA-AC-GAC-GAAACG-ACGA-GCG---GGCG-GGCACT-A-C--GT
** *** * * * * ** * ** * *
2189016 CCCCCCCTGCGTGCTGCCGATCCTGCCACCGCAA-CCCTCGATCCGATCCGATCTTAGACTGGGA
1 CGGCCAGAGAG-GC-G-GGA---TG----CGCAAGCCGTGGAT-CGATAGGGTGGTAG-GTGGGT
* * * ** ** * * ******* ** * *** *
2189080 ATA---A-A-CTCCGTATGCCTAAGCCAACTGATGAA-ACGAGCGGGCGGGCGGGCACTACGCCG
54 TTAGGCACATCTTCATATTTCT--GCC-A-TG-CCAATGCCATTTTTATGGCTTGTA--AATTCA
** * ** ** * * **** * * *
2189139 GCCAGA-GAGGCGGGATGTGCAAGCCGTGGATCGAT-AGGGTGGT-AGGTGGGTTTA-GGCACAT
112 TACA-ATGA-TC--CCT-T--AAGCC-TTCAT-G-TGA-AGT-TTCA--TGGCAAGACGACTCGT
* *** ** * * * ** ** *
2189200 CTTC-ATTTTCTGC-C-ATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATAGTCCCTT
163 TTTCTATTTT-T-CACGAT--TTTTGAAACTTTTTACGG-TT-CAGATTTTTTTAA-AAT---TT
* *** * * * ** ** ** ** *
2189261 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
218 ----TTTCAAAAGGAGTTT--TGGC---CCCAAAC--TTGGTA---GACATGATCCTTG-TA-TT
* *** ** *** *
2189326 TTTACGATTAGGGATCTGTTTAAACTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
267 TTT--G-TT-GGCA--TGCACAAA--------A-AA--A--TTCAGCTAAAAAC-TCG-A-A-GT
* * * * * * * ** * *
2189391 GATTCTTA-TATTTTTTTTG-GCATGTAGAAAAAAAT-TCAGCTAAAAACTC-GA-AGTGTACA-
309 G-TAC--AGGA--TTTTGTGACCAT-TTGAAAAAAGTGTC--CT--CATTTCAGACACTTTA-AT
* ** * ** *** * * * *
2189450 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA--CACTTTATTGGCTATTGGCAGCA
363 GGCTACTG-G--CA---G-CAAACCTGT-AAAATCTCAAATGCTCTTTA-AGG-----GG--G--
* ** * * * * * * ** ** *
2189513 AACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
410 ----TGTGAGTTCTC-GA-GGT-TTGATGAGGG-AT-AG-----G-GG---G-CCA-ATATAAGG
** ** * ** ** * * **
2189578 GCCCAA-TATAAG-GGCCAGTAC-CAGCACCCA--T-CACA-CATCATGTGCGCACACC-ACCCC
455 G-CCAAGTACCAGCACCCA-T-CGCA-CA-TCATGTGCACACCCCCCCGT-C-C-CCCCAATCGT
** * * * * * * * * * * *
2189635 CTG-CCCCCCAAT--CGCTGGAACCCCA-ATGCCGCCAGTCAGGTTCTCTGAAGATGCTCCGGTG
512 C-GAAACCCTAATGCCG-TCG-A--TCAGGT-TCTCC-GAC-GATGCTCCGACGAT---------
* *
2189696 ATGGTGCCCCAGGCAAAAACAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACA
560 --GGTGCCCCAGG-AAAAA-AAATACGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCATA
* * *
2189761 ACCCTCAGTCCGATCCGATCTTACACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
620 ACCCTCGGTCCGATCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
* * * * * *
2189825 CCTATGCCTAAGTCAACGCATGAAATGAACGTGC-GAGCGCTCAACCGGCCAGAGGGGCAGGATG
685 CGTATGCCTAAGTCAACCCACGAAATGAGCGTACAG-GCGCTCAGCCGGCCAGAGGGGCAGGATG
* * * * * * * ** * * **
2189889 CGCAAGTCGGGGAT-TGACTGGGTCCCCCTCTGTGTGTTACCGATCCTACCGCCGCAACCATCAG
749 CACAAG-CCGGGATCGGTC-GGGTCCCCC-CTGTATGCTACCGATCCTGCTACCACAACCCTTGG
* * * * *
2189953 TTC-GATCAGAT-TTAGACTGGGAATAAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGG
811 TTCTGATCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGA-CGAG
*
2190016 CGGGCGGGCACTACGC
873 CGGGCGGGCACTACGT
* *
2190032 CGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
2190097 TCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTGAAGCC
66 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCC
* * ** * *
2190162 TTAATGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCATAATTTTAGAAACTTTTTAT
131 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * **
2190227 GGTTCGGGATTTTTTTAAAA-TTTTTCAGAAGGAGTTCTGGCCCCAAACGTGGTAGATGTGATCC
196 GGTTC-AGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
* *
2190291 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGA
260 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * *
2190356 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATC
325 CCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
2190421 TCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGA
390 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
2190486 GCCAAGAACCAGCACCCATCACACATCATATGCGCACACCCCCCCGCCCCCCCAATCG-CGGGAA
455 GCCAAGTACCAGCACCCATCGCACATC--ATGTGCACACCCCCCCGTCCCCCCAATCGTC-GAAA
* * * * * *
2190550 CCCCAATGCTGTCGGTCAGGTTCTCCGATGATGCTCCGATGATGGTGCCCCGGGCGAAAAAAAAT
517 CCCTAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-AG-GAAAAAAAAT
* * * * ** * * **
2190615 GCGACACCAGCACATGCTCAAGCCCAGCATGTGCATCCGCAACCCTCGGTCTGGTCCAATCTTAC
580 ACGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCATAACCCTCGGTCCGATCTGATCTTAC
* * *
2190680 ACTGGGAATGAACTCCATATGCTTAGACTTGGAATGAACTTCGTATGCCTAAGTCAACCCACAAA
644 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAA
* * * * * ** *
2190745 ACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCAGGATGGGCAAGCCGGGGATCAGTCGGGTCC
709 ATGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCC-GGGATCGGTCGGGTCC
* * *** * * * *
2190810 CCTCCTATGTGCTGTTGATCCTACTGCCACAACCCTTAGTTC-AATCTGATCTTAGACTAGGAAT
773 CC-CCTGTATGCTACCGATCCTGCTACCACAACCCTTGGTTCTGATCTGATCTTAGACT-GGAAT
* * * * * * *
2190874 CAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGGTGGGCACTACGC
836 GAACTCCGTATGCCTAAGCCAA-CGACGAAACGA-CGAGCGGGCGGGCACTACGT
* * *
2190929 CAGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * * * *
2190994 TCTTATTTTTGTCATGCCAATGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCATTAAGCC
66 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCC
* * *
2191059 TTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTACTTTTCACGATTTTTAAAACTTTTTAC
131 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * **
2191124 GGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACCTGGCAGATGTGATCC
196 GGTTCA-GATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
*
2191189 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
260 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * *
2191254 CCATTTGAATAAAGTGTCCGCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAATC
325 CCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * * * *
2191319 TCGAATGATGTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAGGGGGACAATATAAGG
390 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
2191384 GCCAAGTACCAGAACCCACCGCACATCATGTGCGCACACCCCCCACG-CCCCCCACTCGTCGGAA
455 GCCAAGTACCAGCACCCATCGCACATCATGT--GCACACCCCCC-CGTCCCCCCAATCGTCGAAA
* * * * * * ** * *
2191448 CCCCAATGCTGCCGGTCAAGTTCTTCGGTGATGGTGCC--C--TGG-G---CA--AAAAAAAATG
517 CCCTAATGCCGTCGATCAGGTTCTCCGACGATGCT-CCGACGATGGTGCCCCAGGAAAAAAAATA
* * * * * * * * **
2191503 TGGCACTAGCGCATGCCCGAGCCCAGCATATGCACCCGTAACCCTCGGTCTGGTCCGATCTTATG
581 CGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCATAACCCTCGGTCCGATCTGATCTTACA
* * * * * *
2191568 CTGGGAATGAACTTCGTATACTTAGACTGGGAATGAAC-TCAATGTGCCTAAGTCAACCCATGGA
645 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAA
* * * * * ** * **
2191632 ACGAGCTTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGGGCAAGACGAGGATCGACCGGGTCC
709 ATGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCG-GGATCGGTCGGGTCC
* * * * * *** * * * * *
2191697 CCCC-CTACGTGCTGCCAATCCTACTGCTGTAACCCTCGATCCAG-TCTGATCTTAAACTAGGAA
773 CCCCTGTA--TGCTACCGATCCTGCTACCACAACCCTTGGTTCTGATCTGATCTTAGACT-GGAA
* * * * * * *
2191760 TCAACTCCATATGCCTAAGTCAACTAACGAAATGAGCGGGCGAGCGGGCACTACGT
835 TGAACTCCGTATGCCTAAGCCAAC-GACGAAACGA-CGAGCGGGCGGGCACTACGT
*
2191816 CGGCCA-A-A-GAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* ** * * * * * * * *
2191878 TCATATTTTTGTTATGCCAATGCCATTTTTATGACTTGTAAATCCAAATAATGGTCCTTTAGGTC
66 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCC
* * *
2191943 TTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTAC
131 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * *
2192008 GTTTCAAGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
196 GGTTC-AGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
* * * *
2192073 TTTTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAGGATTTTGTTA
260 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
** * * * *
2192138 AAATTTGAAAAAAGTGTGCC-AATTTCAAACACTTTAATGGCTGCTGGAAGCAAACCTGTAAAAT
325 CCATTTGAAAAAAGTGT-CCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
2192202 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAG
389 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
** * * *
2192267 GGCCAAGTAGAAGCACCCATTGCACATCATGTGCGCA------CG-CCCCCCAATCG-CCAGAAC
454 GGCCAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCCGTCCCCCCAATCGTCGA-AAC
* * * * * * *
2192324 CCAAATGCCGTCGGTTAGG-T-T----C--T--T-CGGCGATCGTGCCCCAAGCGAAGAAAAATG
518 CCTAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-AG-GAAAAAAAATA
* * * *** * * * *
2192378 TGGCACCAGCGCATGCCCGAGCCCATCATGTGCACCTGCAACCCTCAGTCCAATCCGTTCTTACA
581 CGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCATAACCCTCGGTCCGATCTGATCTTACA
* *
2192443 CTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCTGTGTGCCTAAGTCAACCCACGAA
645 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAA
* * * * * * ** * *** **
2192507 ACGAGTGTGCGGGCCCTCATCTAGCCAAAGGGGCAGGATGTGTAAGCCGGGGATCGACCGGGTCA
709 ATGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCC-GGGATCGGTCGGGTC-
* * * * * * * **
2192572 CCCCCTGCATGCTGCCGATCCTGCT---GCAACCCTCGATCCAG-TCCAATCTTAGACTGGGAAT
772 CCCCCTGTATGCTACCGATCCTGCTACCACAACCCTTGGTTCTGATCTGATCTTAGACT-GGAAT
* * * * * * *
2192633 CAAGTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCACTGCGC
836 GAACTCCGTATGCCTAAGCCAA-CGACGAAACGA-CGAGCGGGCGGGCACTACGT
** * *
2192688 CGGCCAGAGAGAAGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
2192753 TCATATTTCTGCCATGCCAATGCAATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAATCC
66 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCC
* * * * * *
2192818 TTCATGTGAAGTTTTAATGGCAAGATGACTCATTTTCTATTTTCCATGATTTTTGAAACATTTTA
131 TTCATGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * * *
2192883 CAGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTCTTGGCCCTAAACTTGGCAGACGTGATC
195 CGGTTC-AGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
* * * *
2192948 CTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAATCTCAAAGTGTAAAGGATTTTGTG
259 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
2193013 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
324 ACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
2193078 CTCAAATGCTCTTTAA-GGGG-GTGAGTTCTCGATGTTTGATGAGGGATAGGGGGCCAATATAAG
389 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
2193141 GGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCTGCCCCCCCAATTGTCGG
454 GGCCAAGTACCAGCACCCATCGCACATCATGT--GCACACCCCCC-C-GTCCCCCCAATCGTC-G
* * * * * *
2193206 AACCCCTAATGCCATTGATCAGGTTCTCC-AGTGATGCTCCGACGATGGCGCCTCAGGCAAAAAA
514 AAACCCTAATGCCGTCGATCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCAGG--AAAAA
* * * * * * *
2193270 AAATGCGGCACCACCACATGCCCGAGCCCAGCATGTGCACCCACAAGCCTCAGTCCGGTCCGATC
576 AAATACGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCATAACCCTCGGTCCGATCTGATC
* * *
2193335 TTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGAATGCCTAAGTCAACCCA
640 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
** * * * * ** *
2193400 CGAAACAAGCGTGCGGGCGCTCAGCCGGCTAGAGGGCCAGGATGTGCAAGTCGGGGATCGGTCGG
705 CGAAATGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG-CCGGGATCGGTCGG
** * * * *
2193465 GTCCCCCTCTGCGTGCTGCCGATCTTGCTACCACAACCCTCGG-TCTGATCTGATCTTACACTGA
769 GTCCCCC-CTGTATGCTACCGATCCTGCTACCACAACCCTTGGTTCTGATCTGATCTTAGACTG-
* * * * *
2193529 GAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCCGA-CGGACGGGCACTGCGC
832 GAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGA--CGAGCGGGCGGGCACTACGT
* *
2193588 CGGCCAGAGAGGTGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT-T
1 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
2193652 TCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
66 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCC
* * *
2193717 TTAATGTGAAGTATCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
131 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * * *
2193782 GGTTCGGAATTTTTTTAAAATTTTTTCAGAAGGATTTTTAGCCCCAAATTTGGTAGACGT-ATCC
196 GGTTCAG-ATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
* * * * *
2193846 TTCTATTTTTATTGGCATGCATAAAAAATTTCAACTAAAAACTCGAAGTGTACAGGATTTTGTGA
260 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * *
2193911 CCATTTGAAAAAAGTGTCCCCATTCCAGACACTGTAATGGCTACTGGCAGCAAACCTGTAAAATC
325 CCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
2193976 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGCGGGCCAATATAAGG
390 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
2194041 GCCAAGTACCAGCACCCATTGCACATCTTGTGCACACACCCCCCCGCCCCCCCAATCGTCGGAAC
455 GCCAAGTACCAGCACCCATCGCACATCATGTG--CACACCCCCCCGTCCCCCCAATCGTC-GAAA
* * * * * * *
2194106 CCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGGTGCC--C--TGG-G---CA--AAAACAAATG
517 CCCTAATGCCGTCGATCAGGTTCTCCGACGATGCT-CCGACGATGGTGCCCCAGGAAAAAAAATA
** * * * * *
2194161 CGGCACCAGCACATGCCCGTCCCCAGCATGTGCACCCACAACCCTTGGTTCGGTCCGATCTTACA
581 CGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCATAACCCTCGGTCCGATCTGATCTTACA
* * * * **
2194226 CTGGGAATGAACTCCATATGCTTAGACTCGAAATGAA-GTCTGTATGCCTAAGTCAACCCGTGAA
645 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAA
* * * * * ** * *
2194290 ACGAGCGTGC-GAGCGCTCAACTGGCCAGAGAGGCAGGATGCGTAAGTCGAGGATCGATCGGGTC
709 ATGAGCGTACAG-GCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCG-GGATCGGTCGGGTC
* * ** * * * * * *
2194354 CCCTTCTGCATGCTGTCGATCTTGCTATCGCAACCCTCGGTCCAG-TCTGATCTTAGACTAGGAA
772 CCC-CCTGTATGCTACCGATCCTGCTACCACAACCCTTGGTTCTGATCTGATCTTAGACT-GGAA
2194418 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
835 TGAACTCCGTATGCCTAAGCCAA-CGACGAAACGA
2194453 GTGGACGGGT
Statistics
Matches: 7749, Mismatches: 1497, Indels: 1447
0.72 0.14 0.14
Matches are distributed among these distances:
863 1 0.00
865 2 0.00
867 3 0.00
868 1 0.00
871 1 0.00
872 81 0.01
873 6 0.00
874 87 0.01
875 365 0.05
876 265 0.03
877 29 0.00
878 41 0.01
879 17 0.00
880 30 0.00
881 17 0.00
882 27 0.00
883 15 0.00
884 444 0.06
885 72 0.01
886 324 0.04
887 403 0.05
888 35 0.00
889 13 0.00
890 53 0.01
891 27 0.00
892 53 0.01
893 79 0.01
894 219 0.03
895 310 0.04
896 595 0.08
897 758 0.10
898 495 0.06
899 259 0.03
900 235 0.03
901 87 0.01
902 67 0.01
903 36 0.00
904 56 0.01
905 72 0.01
906 65 0.01
907 99 0.01
908 49 0.01
909 69 0.01
910 200 0.03
911 311 0.04
912 13 0.00
913 12 0.00
914 8 0.00
915 30 0.00
916 42 0.01
917 10 0.00
918 11 0.00
919 4 0.00
920 61 0.01
921 36 0.00
922 21 0.00
923 19 0.00
924 24 0.00
925 21 0.00
926 21 0.00
927 8 0.00
928 23 0.00
929 31 0.00
930 13 0.00
931 7 0.00
932 9 0.00
933 23 0.00
934 5 0.00
935 7 0.00
936 19 0.00
937 10 0.00
938 8 0.00
939 1 0.00
940 7 0.00
941 5 0.00
942 8 0.00
943 14 0.00
944 29 0.00
945 22 0.00
946 18 0.00
947 7 0.00
948 20 0.00
949 14 0.00
950 22 0.00
951 4 0.00
952 3 0.00
953 8 0.00
954 4 0.00
955 22 0.00
956 13 0.00
957 13 0.00
958 3 0.00
959 4 0.00
962 3 0.00
963 5 0.00
964 4 0.00
965 3 0.00
966 8 0.00
967 13 0.00
968 21 0.00
969 6 0.00
970 8 0.00
971 8 0.00
972 10 0.00
973 13 0.00
974 21 0.00
975 8 0.00
976 4 0.00
977 5 0.00
978 6 0.00
979 8 0.00
980 4 0.00
981 1 0.00
982 6 0.00
983 11 0.00
984 23 0.00
985 12 0.00
986 6 0.00
987 2 0.00
988 2 0.00
992 1 0.00
993 14 0.00
994 18 0.00
995 11 0.00
996 4 0.00
997 4 0.00
998 5 0.00
1001 1 0.00
1002 5 0.00
1003 24 0.00
1004 13 0.00
1005 22 0.00
1006 34 0.00
1007 15 0.00
1008 18 0.00
1009 9 0.00
1010 11 0.00
1012 3 0.00
1013 2 0.00
1014 1 0.00
1015 2 0.00
1016 6 0.00
1017 1 0.00
1018 3 0.00
1019 3 0.00
1020 6 0.00
1023 7 0.00
1024 46 0.01
1025 33 0.00
1026 52 0.01
1027 39 0.01
1028 53 0.01
1029 47 0.01
1030 165 0.02
1031 53 0.01
1032 62 0.01
1033 152 0.02
1034 71 0.01
1035 42 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (888 bp):
CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCC
TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
GGTTCAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
CATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCCGTCCCCCCAATCGTCGAAACCCT
AATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGGAAAAAAAATACGGCA
CCAGCACATGCCGAGCCCAGCATGTGCACCCATAACCCTCGGTCCGATCTGATCTTACACTGGGA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCG
TACAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGATCGGTCGGGTCCCCCCTGTA
TGCTACCGATCCTGCTACCACAACCCTTGGTTCTGATCTGATCTTAGACTGGAATGAACTCCGTA
TGCCTAAGCCAACGACGAAACGACGAGCGGGCGGGCACTACGT
Found at i:2187863 original size:26 final size:26
Alignment explanation
Indices: 2187827--2187879 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2187817 TCGATCTGAT
2187827 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
2187853 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
2187879 C
1 C
2187880 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:2189808 original size:25 final size:26
Alignment explanation
Indices: 2189780--2189831 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2189770 CCGATCCGAT
*
2189780 CTTACACT-GGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCCTATG
*
2189805 CTTAGACTGGGAATGAACTCCCTATG
1 CTTACACTGGGAATGAACTCCCTATG
2189831 C
1 C
2189832 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCCTATG
Found at i:2193363 original size:26 final size:26
Alignment explanation
Indices: 2193334--2193386 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2193324 CCGGTCCGAT
*
2193334 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGAATG
* *
2193360 CTTAGACTGGGAATGAACTCCGAATG
1 CTTACACTAGGAATGAACTCCGAATG
2193386 C
1 C
2193387 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGAATG
Found at i:2194106 original size:897 final size:896
Alignment explanation
Indices: 2187990--2194474 Score: 8015
Period size: 897 Copynumber: 7.3 Consensus size: 896
2187980 CTGCTGCCAT
* ** * * * *
2187990 AACCCTCAATCCGGTCTAATCTTACACTAGGAATGAACTCTGTATGCTTAGATTGGGAATAAACT
1 AACCCTCAGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
2188055 TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAACCGGCCAGAGAGGCAAGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * * ** * * * * * * *
2188120 CACAAGCC-GAGACCGATCAAGTCCCCAC-ATGCATGCTGTCAATCTTGCTACTGCAACCCTTGG
131 CGCAAGCCGGGGATCGATCGGGTCCCC-CTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGG
* * * * * *
2188183 T-TCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAATCGACAAAACGAGCGGA
195 TCT-GATCTGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* *
2188247 CGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGT
259 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
2188312 GGGTTTAGGCACATCTTCATATTTTTG-CAGTACCAATGCCATTTTTATGGCTTGTAAATTCATA
324 GGGTTTAGGCACATCTTCATATTTTTGCCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
2188376 TAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
388 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
** * * * **
2188441 TTTTCAAAACTTTTTACAGTTC-AAGATTTTTTTAAAATTTTTTCAGAAGGAATTTTGTTCCCAA
453 TTTTTGAAACTTTTTACGGTTCGGA-ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * * * *
2188505 ACTTGGTACACATGATTCTTTTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAA
517 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * *
2188570 GTGTACAGGATTTTGAGTCCATTTCAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGG
582 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
2188635 CAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
647 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
2188700 TAGGGGGCAAATATAAGGGCCAAGTACCAGAACCCATCACACATCATGTGCACACACCCCCCCCG
712 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCG
* * * * * *
2188765 CCTCCCCAATCGCCGGAACCCCAATACCGTTGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
776 CCCCCCCAATCGTCGGAACCCCAATGCC--TCGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTG
* * * * * *
2188830 CCACGGGCGAAATAAAAATGCGGCACCAGCACATGCCCAAGCCCGGCATGTGCACCTGT
839 CCCCGGGC-AAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
* * * *
2188889 AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGTAATGAACT
1 AACCCTCAGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
2188954 -C-TA----T-A-T----GC-C--TA--A--GT-------CTCAGCCGGCCAGAGGGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * * * *
2188993 CGCAAGCCGAGGATTGATCGGGTCCCCCCCTGCGTGCTGCCGATCCTGCCACCGCAACCCTCGAT
131 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGT
* * * * * *
2189058 CCGATCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCG
196 CTGATCTGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
*
2189123 GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
261 GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
2189188 GTTTAGGCACATCTTCAT-TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
326 GTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
2189252 TAGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
391 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * * * *
2189317 TTGAAACTTTTTACGATTAGGGATCTGTTTAAACTTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
456 TTGAAACTTTTTACGGTTCGGAATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* * * *
2189382 GGTAGACGTGATTCTTATATTTTTTTTGGCATGTAGAAAAAAATTCAGCTAAAAACTCGAAGTGT
521 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
2189447 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTATTGGCAGC
586 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
2189512 AAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
651 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
2189577 GGCCCAATATAAGGGCC-AGTACCAGCACCCATCACACATCATGTGCGCACACCACCCCCTG-CC
716 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCC-GCCC
* * * *
2189640 CCCCAATCG-CTGGAACCCCAATGCCGCCAGTCAGGTTCT-CTGAAGATGCTCCGGTGATGGTGC
779 CCCCAATCGTC-GGAACCCCAATGCC-TC-GTCAGGTTCTCCAG-TGATGCTCCGGCGATGGTGC
* * *
2189703 CCCAGGCAAAAACAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCAC
840 CCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
*
2189760 AACCCTCAGTCCGATCCGATCTTACACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
1 AACCCTCAGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
2189824 CCCTATGCCTAAGTCAACGCATGAAATGAACGTGCGAGCGCTCAACCGGCCAGAGGGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * * * * * ** * *
2189889 CGCAAGTCGGGGATTGA-CTGGGTCCCCCTCTGTGTGTTACCGATCCTACCGCCGCAACCATCAG
131 CGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGG
* * * * *
2189953 T-TCGATCAGAT-TTAGACTGGGAATAAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGG
195 TCT-GATCTGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* *
2190016 CGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGT
259 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
2190081 GGGTTTAGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
324 GGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * *
2190146 AATGCTCCCTGAAGCCTTAATGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCATAAT
389 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * *
2190211 TTTAGAAACTTTTTATGGTTCGGGATTTTTTTAAAA-TTTTTCAGAAGGAGTTCTGGCCCCAAAC
454 TTTTGAAACTTTTTACGGTTCGGAATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* * *
2190275 GTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
519 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
2190340 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
584 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
2190405 GCAAACTTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
649 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
2190470 GGGGGCCAATATAAGAGCCAAGAACCAGCACCCATCACACATCATATGCGCACACCCCCCCGCCC
714 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCC
* **
2190535 CCCCAATCG-CGGGAACCCCAATGCTGTCGGTCAGGTTCTCC-GATGATGCTCCGATGATGGTGC
779 CCCCAATCGTC-GGAACCCCAATGC-CTC-GTCAGGTTCTCCAG-TGATGCTCCGGCGATGGTGC
* * * * *
2190598 CCCGGGCGAAAAAAAATGCGACACCAGCACATGCTCAAGCCCAGCATGTGCATCCGC
840 CCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
* * * * *
2190655 AACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCATATGCTTAGACTTGGAATGAACT
1 AACCCTCAGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * ** *
2190720 TCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* ** ** * * * **
2190785 GGCAAGCCGGGGATC-AGTCGGGT-CCCCTCCTATGTGCTGTTGATCCTACTGCCACAACCCTTA
131 CGCAAGCCGGGGATCGA-TCGGGTCCCCCT-CTGCGTGCTGCCGATCCTGCTACCGCAACCCTCG
* * *
2190848 GT-TCAATCTGATCTTAGACTAGGAATCAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGG
194 GTCT-GATCTGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * *
2190912 GCAGGTGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGCTGGTAGG
258 GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
2190977 TGGGTTTAGGCACATCTTCTTATTTTTGTCATGCCAATGCCATTTTTATGGCTTGTAATTTCATA
323 TGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
2191042 CAATGGTCCATTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTACTTTTCACGA
388 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* *
2191107 TTTTTAAAACTTTTTACGGTTCAGG-ATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAA
453 TTTTTGAAACTTTTTACGGTTC-GGAATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * *
2191171 ACCTGGCAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
517 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
2191236 GTGTACAGGATTTTGTGACCATTTGAATAAAGTGTCCGCATTTCAGACACCTTAATGGCTACTGG
582 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * * *
2191301 CAGCAAACCTGTAAAATCTCGAATGATGTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGA
647 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
2191366 TAGGGGGACAATATAAGGGCCAAGTACCAGAACCCACCGCACATCATGTGCGCACACCCCCCACG
712 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CG
* * * * *
2191431 -CCCCCCACTCGTCGGAACCCCAATG-CT-G-CCGG---TCAAGT--T-CTTCGGTGATGGTGCC
776 CCCCCCCAATCGTCGGAACCCCAATGCCTCGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCC
* * * * * *
2191486 CTGGGCAAAAAAAAATGTGGCACTAGCGCATGCCCGAGCCCAGCATATGCACCCGT
841 CCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
* * ** * *
2191542 AACCCTCGGTCTGGTCCGATCTTATGCTGGGAATGAACTTCGTATACTTAGACTGGGAATGAACT
1 AACCCTCAGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
** * * * * * *
2191607 CAATGTGCCTAAGTCAACCCATGGAACGAGCTTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * * * * * * * * * * *
2191672 GGCAAGACGAGGATCGACCGGGTCCCCCCCTACGTGCTGCCAATCCTACTGCTGTAACCCTCGAT
131 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGT
* * * * ** *
2191737 C-CAGTCTGATCTTAAACTAGGAATCAACTCCATATGCCTAAGTCAACTAACGAAATGAGCGGGC
196 CTGA-TCTGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * *
2191801 GAGCGGGCACTACGTCGGCCA-A-A-GAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
260 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** * * * *
2191863 GGTTTAGGCACATCTTCATATTTTTGTTATGCCAATGCCATTTTTATGACTTGTAAATCCAAATA
325 GGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
2191928 ATGGTCCTTTAGGTCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATT
390 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * * *
2191993 TTTTAAACTTTTTACGTTTC-AAGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAAC
455 TTTGAAACTTTTTACGGTTCGGA-ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* *
2192057 TTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGT
519 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* ** * * * * *
2192122 GTACAGGATTTTGTTAAAATTTGAAAAAAGTGTGCCAATTTCAAACACTTTAATGGCTGCTGGAA
584 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
2192187 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
649 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* ** *
2192252 GAGGGCCAATATAAGGGCCAAGTAGAAGCACCCATTGCACATCATGTGCG--CA------CG-CC
714 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCC
* * * * * * *
2192308 CCCCAATCGCCAGAACCCAAATG-C-CGTC-GG-T-T--AG-G-TTCTTCGGCGATCGTGCCCCA
779 CCCCAATCGTCGGAACCCCAATGCCTCGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCG
* * * * * * *
2192364 AGCGAAGAAAAATGTGGCACCAGCGCATGCCCGAGCCCATCATGTGCACCTGC
844 GGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
** * *
2192417 AACCCTCAGTCCAATCCGTTCTTACACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
1 AACCCTCAGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * ** *
2192482 CTGTGTGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCCCTCATCTAGCCAAAGGGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * * * *
2192547 TGTAAGCCGGGGATCGACCGGGTCACCCC-CTGCATGCTGCCGATCCTGCT---GCAACCCTCGA
131 CGCAAGCCGGGGATCGATCGGGTC-CCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGG
* ** * * * *
2192608 TC-CAGTCCAATCTTAGACTGGGAATCAAGTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGG
195 TCTGA-TCTGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* ** * *
2192672 CGGGCGGGCACTGCGCCGGCCAGAGAGAAGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGT
259 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
2192737 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCAATTTTTATGGTTTGTAAATTCATAC
324 GGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * *
2192802 AATGGTCCCTTAATCCTTCATGTGAAGTTTTAATGGCAAGATGACTCATTTTCTATTTTCCATGA
389 AATGGTCCCTTAAGCCTTCATGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * *
2192867 TTTTTGAAACATTTTACAGTTC-GAGATTTTTTTAAAATTTTTTCAAAAGGAGTCTTGGCCCTAA
453 TTTTTGAAACTTTTTACGGTTCGGA-ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * * * *
2192931 ACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAATCTCAAA
517 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
2192996 GTGTAAAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGG
582 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
2193061 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGG-GTGAGTTCTCGATGTTTGATGAGGGA
647 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
2193124 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCT
712 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-C-
* * *
2193189 GCCCCCCCAATTGTCGGAACCCCTAATGCCATTGATCAGGTTCTCCAGTGATGCTCCGACGATGG
775 GCCCCCCCAATCGTCGGAACCCC-AATGCC-TCG-TCAGGTTCTCCAGTGATGCTCCGGCGATGG
* * * * *
2193254 CGCCTCAGGCAAAAAAAAATGCGGCACCACCACATGCCCGAGCCCAGCATGTGCACCCAC
837 TGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
* *
2193314 AAGCCTCAGTCCGGTCCGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
1 AACCCTCAGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
2193379 CCGAATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCTAGAGGGCCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * * * *
2193444 TGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACCACAACCCTCGGT
131 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGT
* * * * * *
2193509 CTGATCTGATCTTACACT-GAGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCCGAC
196 CTGATCTGATCTTAGACTAG-GAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * *
2193573 GGACGGGCACTGCGCCGGCCAGAGAGGTGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTG
260 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
2193638 GGTTTAGGCACAT-TTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
325 GGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
2193702 ATGGTCCCTTAAGCCTTAATGTGAAGTATCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
390 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * *
2193767 TTTGAAACTTTTTACGGTTCGGAATTTTTTTAAAATTTTTTCAGAAGGATTTTTAGCCCCAAATT
455 TTTGAAACTTTTTACGGTTCGGAATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * * * *
2193832 TGGTAGACGT-ATCCTTCTATTTTTATTGGCATGCATAAAAAATTTCAACTAAAAACTCGAAGTG
520 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
2193896 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTGTAATGGCTACTGGCAG
585 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
2193961 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAG
650 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
2194026 CGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCTTGTGCACACACCCCCCCGCCCC
715 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCC
* *
2194091 CCCAATCGTCGGAACCCCCAATG--TCGTC-GG---T-CAG-G-TTCTCCGGCGATGGTGCCCTG
780 CCCAATCGTCGGAA-CCCCAATGCCTCGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCG
* ** *
2194147 GGCAAAAACAAATGCGGCACCAGCACATGCCCGTCCCCAGCATGTGCACCCAC
844 GGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
** * * * * *
2194200 AACCCTTGGTTCGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTCGAAATGAAGT
1 AACCCTCAGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* ** * * *
2194265 CTGTATGCCTAAGTCAACCCGTGAAACGAGCGTGCGAGCGCTCAACTGGCCAGAGAGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * * * * * * *
2194330 CGTAAGTCGAGGATCGATCGGGTCCCCTTCTGCATGCTGTCGATCTTGCTATCGCAACCCTCGGT
131 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGT
* * * *
2194395 C-CAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGAC
196 CTGA-TCTGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
*
2194459 GGGTGGGCACTACGCC
260 GGGCGGGCACTACGCC
2194475 TTCATGTGAA
Statistics
Matches: 4861, Mismatches: 621, Indels: 221
0.85 0.11 0.04
Matches are distributed among these distances:
870 34 0.01
871 74 0.02
872 176 0.04
873 381 0.08
874 250 0.05
875 352 0.07
876 245 0.05
877 1 0.00
878 1 0.00
880 2 0.00
882 5 0.00
883 1 0.00
884 427 0.09
885 20 0.00
886 304 0.06
887 288 0.06
888 9 0.00
889 4 0.00
890 5 0.00
891 4 0.00
892 4 0.00
893 7 0.00
894 4 0.00
895 503 0.10
896 393 0.08
897 628 0.13
898 391 0.08
899 215 0.04
900 132 0.03
901 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
AACCCTCAGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGT
CTGATCTGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
TTGAAACTTTTTACGGTTCGGAATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCC
CCAATCGTCGGAACCCCAATGCCTCGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGGG
CAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
Found at i:2195770 original size:17 final size:16
Alignment explanation
Indices: 2195750--2195803 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
2195740 TTTTTAGGAC
*
2195750 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
*
2195767 TTTGAATTTTAGGGGAT
1 TTTGGATTTTAGGGG-T
2195784 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
2195801 TTT
1 TTT
2195804 AAAAACTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 4 0.12
17 19 0.59
18 9 0.28
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:2197219 original size:24 final size:22
Alignment explanation
Indices: 2197160--2197220 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 22
2197150 ATTATTTTTC
*
2197160 TTTTTTTTTGTTTTTTGCTATT
1 TTTTTTTTTATTTTTTGCTATT
*
2197182 TTTTTTGTATTATTTTTTGGTATT
1 TTTTTT-T-TTATTTTTTGCTATT
2197206 TATTTTTTTGTATTT
1 T-TTTTTTT-TATTT
2197221 CGTATAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 6 0.18
23 2 0.06
24 20 0.61
25 5 0.15
ACGTcount: A:0.10, C:0.02, G:0.10, T:0.79
Consensus pattern (22 bp):
TTTTTTTTTATTTTTTGCTATT
Found at i:2197220 original size:14 final size:14
Alignment explanation
Indices: 2197181--2197220 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
2197171 TTTTTGCTAT
2197181 TTTTTTTGTA-TTA
1 TTTTTTTGTATTTA
*
2197194 TTTTTTGGTATTTA
1 TTTTTTTGTATTTA
2197208 TTTTTTTGTATTT
1 TTTTTTTGTATTT
2197221 CGTATAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 9 0.38
14 15 0.62
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (14 bp):
TTTTTTTGTATTTA
Found at i:2197552 original size:85 final size:87
Alignment explanation
Indices: 2197407--2197613 Score: 285
Period size: 85 Copynumber: 2.4 Consensus size: 87
2197397 AAAAATAATA
* *
2197407 AATCGATCGAGATAACACACGTGAATCAAAATTATGCCTGGAGGTCTTACAGAATAGACTGGGAT
1 AATCGATCG-GATAACAC-CGTGAATCAAAATTATGCCTGAAGGTCTTACAAAATAGACTGGGAT
*
2197472 AACATCG-CAGTCAAAAGATAAAG
64 AACATCGTAAGTCAAAAGATAAAG
* *
2197495 AATCGATCGGATAACACCGCGAATC-AAATTATGTCC-GAAGGTCTTACAAAATCGACTGGGATA
1 AATCGATCGGATAACACCGTGAATCAAAATTATG-CCTGAAGGTCTTACAAAATAGACTGGGATA
*
2197558 ACATCGTTAAGTCAAAAGATAAGG
65 ACATCG-TAAGTCAAAAGATAAAG
*
2197582 AATCGATCGGGATAACACCGTGAATCGAAATT
1 AATCGATC-GGATAACACCGTGAATCAAAATT
2197614 TACGCTCGGA
Statistics
Matches: 107, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
85 38 0.36
86 9 0.08
87 30 0.28
88 25 0.23
89 5 0.05
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21
Consensus pattern (87 bp):
AATCGATCGGATAACACCGTGAATCAAAATTATGCCTGAAGGTCTTACAAAATAGACTGGGATAA
CATCGTAAGTCAAAAGATAAAG
Found at i:2197648 original size:21 final size:23
Alignment explanation
Indices: 2197620--2197681 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
2197610 AATTTACGCT
2197620 CGGAGGTCTTA-AGAATCAT-AC
1 CGGAGGTCTTACAGAATCATGAC
* * *
2197641 CTGAGGTCTTATAGAATCATGCC
1 CGGAGGTCTTACAGAATCATGAC
2197664 CGGAGGTCTTACAGAATC
1 CGGAGGTCTTACAGAATC
2197682 GACTGGAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.29
22 8 0.23
23 17 0.49
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (23 bp):
CGGAGGTCTTACAGAATCATGAC
Found at i:2197777 original size:22 final size:22
Alignment explanation
Indices: 2197752--2197809 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
2197742 TTATGCCCGG
* *
2197752 AGGTCTTAGA-AATCGTGCTCGA
1 AGGTCTTACAGAATCATGC-CGA
*
2197774 AGGTCTTACAGAATCATGCCGG
1 AGGTCTTACAGAATCATGCCGA
2197796 AGGTCTTACAGAAT
1 AGGTCTTACAGAAT
2197810 TGACTCGGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 25 0.78
23 7 0.22
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (22 bp):
AGGTCTTACAGAATCATGCCGA
Found at i:2197883 original size:128 final size:127
Alignment explanation
Indices: 2197533--2197893 Score: 424
Period size: 129 Copynumber: 2.8 Consensus size: 127
2197523 TTATGTCCGA
* *
2197533 AGGTCTTACAAAATCGACTGGGATAACATCGTTAAGTCAAAAGATAAGGAATCGATCGGGATAAC
1 AGGTCTTACAGAATCGACTGGG-TAACATCG-TAAGTCAGAAGATAAGGAATCGATCGGGATAAC
* * *
2197598 ACCGTGAATCGAAATTTACGCTCGGAGGTCTTAAGAATCATACCTGAGGTCTTATAGAATCATGC
64 A-C--GAATCGAAA-TTATGCCCGGAGGTCTTAA-AATCATACCTGAGGTCTTACAGAATCATGC
2197663 CCGG
124 CCGG
* *
2197667 AGGTCTTACAGAATCGACTGGAATAAAATCGTAAGTC-GAAAGATAAGGAATCGATCGGGATAAC
1 AGGTCTTACAGAATCGACTGG-GTAACATCGTAAGTCAG-AAGATAAGGAATCGATCGGGATAAC
* * *
2197731 ACGAATCAAAATTATGCCCGGAGGTCTTAGAAATCGT-GCTCGAAGGTCTTACAGAATCATG-CC
64 ACGAATCGAAATTATGCCCGGAGGTCTTA-AAATCATACCT-G-AGGTCTTACAGAATCATGCCC
2197794 GG
126 GG
* * ** *
2197796 AGGTCTTACAGAATTGACTCGGGTAACATCGCAAGTCAGAA-ATAAAAAATCGATCGGGACAACA
1 AGGTCTTACAGAATCGACT-GGGTAACATCGTAAGTCAGAAGATAAGGAATCGATCGGGATAACA
*
2197860 CAAATCGAAATTATGCCCGGAGGTCTTACAAATC
65 CGAATCGAAATTATGCCCGGAGGTCTTA-AAATC
2197894 TCAAAATCTT
Statistics
Matches: 200, Mismatches: 20, Indels: 20
0.83 0.08 0.08
Matches are distributed among these distances:
128 53 0.26
129 58 0.29
130 29 0.14
132 1 0.00
133 32 0.16
134 27 0.14
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (127 bp):
AGGTCTTACAGAATCGACTGGGTAACATCGTAAGTCAGAAGATAAGGAATCGATCGGGATAACAC
GAATCGAAATTATGCCCGGAGGTCTTAAAATCATACCTGAGGTCTTACAGAATCATGCCCGG
Found at i:2198666 original size:33 final size:31
Alignment explanation
Indices: 2198597--2198907 Score: 274
Period size: 33 Copynumber: 9.6 Consensus size: 31
2198587 TTGGGGCTAA
*
2198597 ATAAACTTGGCTTAAATTT-ATTGAAGGCCAG
1 ATAAACTGGGCTTAAATTTCATTGAA-GCCAG
*
2198628 CTAAACTGGGCTTAAATCTTCATTTGAAGCCAG
1 ATAAACTGGGCTTAAAT-TTCA-TTGAAGCCAG
* * ** *
2198661 ATAAACTAGGTTTAAAACCTCATTGATGGCCAG
1 ATAAACTGGGCTT-AAATTTCATTGA-AGCCAG
* *
2198694 ATGAACT-GGCTTAAAGCTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAA-TTTCATTGAA--GCCAG
2198726 ATAAACTGGGCTTAAAGTTTCATTGAGAGCCAG
1 ATAAACTGGGCTTAAA-TTTCATTGA-AGCCAG
*
2198759 ATAAACTGGGCTTAAAGCTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAA-TTTCATTGAA--GCCAG
* * *
2198792 ATAAACTAGGCTTAAATATCATTGATGGCCAG
1 ATAAACTGGGCTTAAATTTCATTGA-AGCCAG
* *
2198824 ACAAACT-GGCTTAAATTTTCATTGATGGCCAG
1 ATAAACTGGGCTTAAA-TTTCATTGA-AGCCAG
2198856 ATAAACTGGGCTTAAAATTTCATT-AATGGCCAG
1 ATAAACTGGGCTT-AAATTTCATTGAA--GCCAG
2198889 ATAAACTGGGCTTAAATTT
1 ATAAACTGGGCTTAAATTT
2198908 TATTTTATTT
Statistics
Matches: 237, Mismatches: 23, Indels: 39
0.79 0.08 0.13
Matches are distributed among these distances:
31 28 0.12
32 72 0.30
33 124 0.52
34 12 0.05
35 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (31 bp):
ATAAACTGGGCTTAAATTTCATTGAAGCCAG
Found at i:2198725 original size:65 final size:66
Alignment explanation
Indices: 2198597--2198904 Score: 380
Period size: 65 Copynumber: 4.7 Consensus size: 66
2198587 TTGGGGCTAA
* * * *
2198597 ATAAACTTGGCTT-AAATTT-ATTGAAGGCCAGCTAAACTGGGCTTAAATCTTCATT--TGAAGC
1 ATAAACTAGGCTTAAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAATG--GC
2198658 CAG
64 CAG
* ** *
2198661 ATAAACTAGGTTTAAAACCTCATTGATGGCCAGATGAACT-GGCTTAAAGCTTCATTAATGGCCA
1 ATAAACTAGGCTTAAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
2198725 G
66 G
* *
2198726 ATAAACTGGGCTTAAAGTTTCATTGA-GAGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCC
1 ATAAACTAGGCTTAAAATTTCATTGATG-GCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCC
2198790 AG
65 AG
* * ** *
2198792 ATAAACTAGGCTT-AAATATCATTGATGGCCAGACAAACT-GGCTTAAATTTTCATTGATGGCCA
1 ATAAACTAGGCTTAAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
2198855 G
66 G
* *
2198856 ATAAACTGGGCTTAAAATTTCATTAATGGCCAGATAAACTGGGCTTAAA
1 ATAAACTAGGCTTAAAATTTCATTGATGGCCAGATAAACTGGGCTTAAA
2198905 TTTTATTTTA
Statistics
Matches: 210, Mismatches: 25, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
64 46 0.22
65 100 0.48
66 62 0.30
67 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (66 bp):
ATAAACTAGGCTTAAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
G
Found at i:2200543 original size:17 final size:17
Alignment explanation
Indices: 2200521--2200564 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
2200511 TAAAAAAAAT
*
2200521 TTTTTTTTA-ATTTTCTA
1 TTTTTTTTATATTAT-TA
2200538 TTTTTTTTATATTATTA
1 TTTTTTTTATATTATTA
*
2200555 TTTTTGTTAT
1 TTTTTTTTAT
2200565 TTTAAGTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTTTTTTATATTATTA
Found at i:2200963 original size:33 final size:32
Alignment explanation
Indices: 2200943--2201051 Score: 107
Period size: 33 Copynumber: 3.4 Consensus size: 32
2200933 CTAAGTTTTT
2200943 AAAACCCCTAAAAATCCAAAATCCCTAAAATTC
1 AAAACCCCTAAAAATCCAAAAT-CCTAAAATTC
* * *
2200976 AAAACCTCTTAAAATCCAAAGTCCTAAAATTC
1 AAAACCCCTAAAAATCCAAAATCCTAAAATTC
* * *
2201008 AAAA--CCT-AAAATTCAAAACCTCTTAAAATCC
1 AAAACCCCTAAAAATCCAAAA--TCCTAAAATTC
*
2201039 AAAATCCCTAAAA
1 AAAACCCCTAAAA
2201052 TTCAAAACCT
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.14
30 2 0.03
31 13 0.21
32 14 0.22
33 22 0.35
34 3 0.05
ACGTcount: A:0.51, C:0.27, G:0.01, T:0.21
Consensus pattern (32 bp):
AAAACCCCTAAAAATCCAAAATCCTAAAATTC
Found at i:2200978 original size:16 final size:15
Alignment explanation
Indices: 2200943--2201074 Score: 113
Period size: 17 Copynumber: 8.2 Consensus size: 15
2200933 CTAAGTTTTT
*
2200943 AAAACCCCTAAAAATCC
1 AAAA-CCCT-AAAATTC
2200960 AAAATCCCTAAAATTC
1 AAAA-CCCTAAAATTC
*
2200976 AAAACCTCTTAAAATCC
1 AAAACC-C-TAAAATTC
**
2200993 AAAGTCCTAAAATTC
1 AAAACCCTAAAATTC
2201008 AAAA-CCTAAAATTC
1 AAAACCCTAAAATTC
*
2201022 AAAACCTCTTAAAATCC
1 AAAACC-C-TAAAATTC
2201039 AAAATCCCTAAAATTC
1 AAAA-CCCTAAAATTC
*
2201055 AAAACCTCTTAAAATCC
1 AAAACC-C-TAAAATTC
2201072 AAA
1 AAA
2201075 GTCAAGTGAG
Statistics
Matches: 97, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
14 14 0.14
15 15 0.15
16 25 0.26
17 41 0.42
18 2 0.02
ACGTcount: A:0.51, C:0.27, G:0.01, T:0.22
Consensus pattern (15 bp):
AAAACCCTAAAATTC
Found at i:2201007 original size:32 final size:33
Alignment explanation
Indices: 2200943--2201014 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
2200933 CTAAGTTTTT
*
2200943 AAAACCCCTAAAAATCCAAAATCCCTAAAATTC
1 AAAACCTCTAAAAATCCAAAATCCCTAAAATTC
* *
2200976 AAAACCTCTTAAAATCCAAAGT-CCTAAAATTC
1 AAAACCTCTAAAAATCCAAAATCCCTAAAATTC
2201008 AAAACCT
1 AAAACCT
2201015 AAAATTCAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
32 17 0.47
33 19 0.53
ACGTcount: A:0.50, C:0.28, G:0.01, T:0.21
Consensus pattern (33 bp):
AAAACCTCTAAAAATCCAAAATCCCTAAAATTC
Found at i:2201025 original size:46 final size:47
Alignment explanation
Indices: 2200943--2201061 Score: 177
Period size: 46 Copynumber: 2.5 Consensus size: 47
2200933 CTAAGTTTTT
* *
2200943 AAAACCCCTAAAAATCCAAAATCCCTAAAATTCAAAACCTCTTAAAATCC
1 AAAATCCCT-AAAATTCAAAA--CCTAAAATTCAAAACCTCTTAAAATCC
*
2200993 AAAGT-CCTAAAATTCAAAACCTAAAATTCAAAACCTCTTAAAATCC
1 AAAATCCCTAAAATTCAAAACCTAAAATTCAAAACCTCTTAAAATCC
2201039 AAAATCCCTAAAATTCAAAACCT
1 AAAATCCCTAAAATTCAAAACCT
2201062 CTTAAAATCC
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
46 31 0.48
47 17 0.27
48 10 0.16
49 3 0.05
50 3 0.05
ACGTcount: A:0.50, C:0.27, G:0.01, T:0.22
Consensus pattern (47 bp):
AAAATCCCTAAAATTCAAAACCTAAAATTCAAAACCTCTTAAAATCC
Found at i:2201054 original size:33 final size:31
Alignment explanation
Indices: 2201000--2201074 Score: 123
Period size: 33 Copynumber: 2.4 Consensus size: 31
2200990 TCCAAAGTCC
*
2201000 TAAAATTCAAAACCTAAAATTCAAAACCTCT
1 TAAAATCCAAAACCTAAAATTCAAAACCTCT
2201031 TAAAATCCAAAATCCCTAAAATTCAAAACCTCT
1 TAAAATCCAAAA--CCTAAAATTCAAAACCTCT
2201064 TAAAATCCAAA
1 TAAAATCCAAA
2201075 GTCAAGTGAG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
31 11 0.27
33 30 0.73
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (31 bp):
TAAAATCCAAAACCTAAAATTCAAAACCTCT
Found at i:2202173 original size:18 final size:18
Alignment explanation
Indices: 2202150--2202191 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
2202140 AAAGTGTCTG
2202150 AAATGGGACACTTTTTTC
1 AAATGGGACACTTTTTTC
2202168 AAATGGGACACTTTTTTC
1 AAATGGGACACTTTTTTC
2202186 AAATGG
1 AAATGG
2202192 TCACAAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (18 bp):
AAATGGGACACTTTTTTC
Found at i:2203615 original size:26 final size:26
Alignment explanation
Indices: 2203578--2203630 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2203568 GTTGACTTAG
* * *
2203578 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2203604 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2203630 G
1 G
2203631 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2204912 original size:580 final size:581
Alignment explanation
Indices: 2203787--2204929 Score: 1790
Period size: 580 Copynumber: 2.0 Consensus size: 581
2203777 GGGGTATGCG
* * * *
2203787 CACATGATGTGTGATGGGTGCTGCTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCT
1 CACAAGATGTGCGATGGGTACTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
2203852 CAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGACATTAAA
66 CAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGACATTAAA
*
2203917 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
131 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
*
2203982 GAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT
196 GAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACT
** * * *
2204047 TGTTCTGAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAA
261 CCTTATGAAAAAATTTTAAAAAAATCACAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
2204112 AACGAGTGGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGC
326 AACGAGTAGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGC
* *
2204177 CATAAAAATGGCATTGACACGGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCG
391 CATAAAAATGGCATTGACACGGTAGAAATATGAAGATGTACCTAAACCAACCTACCACACTATCG
** * *
2204242 ATCCAGGGCTTGCGCATCCCACCTCTTTGGCCGGAGTAGTGCTTGCTCGCCTGCTTGTATCGTCA
456 ATCCAGGGCTTGCGCATCCCACCTCTTTGGCCGGAGTAGTGCCCGCCCGCCTGCTCGTATCGTCA
* * *
2204307 GTTGGCTTAGGCTTACGGGGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGTTGTGCA
521 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGTTGTGCA
* *
2204368 CACAAGATGTGCGATGGGTACTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCT
1 CACAAGATGTGCGATGGGTACTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
2204433 CGAGAACTCGCACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
66 CAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGACATTAAA
2204498 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
131 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
* *
2204563 GAATTTTTTTGTGCATGCCTAC-AAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACT
196 GAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACT
*
2204627 CCTTATGAAAAAATTTTAAAAAAATCACAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
261 CCTTATGAAAAAATTTTAAAAAAATCACAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
2204692 AACGAGTCATTC-TGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAG
326 AACGAGT-AGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAG
* * *
2204756 CCATAAAAATGGCATTGGCAGGGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACACTATC
390 CCATAAAAATGGCATTGACACGGTAGAAATATGAAGATGTACCTAAACCAACCTACCACACTATC
* * * ** * *
2204821 GATCCATGGCTTGCGCATCTCGCCT-TTCTGGTTGGCGTAGTGCCCGCCCGTCC-GCTCGTTTCG
455 GATCCAGGGCTTGCGCATCCCACCTCTT-TGGCCGGAGTAGTGCCCGCCCG-CCTGCTCGTATCG
** * * *
2204884 TTGGTTGGCTTTGGCATATGGAGTTCATTCCCAATCTAATATCAGA
518 TCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
2204930 CCAGACTGAG
Statistics
Matches: 510, Mismatches: 49, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
579 2 0.00
580 302 0.59
581 206 0.40
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (581 bp):
CACAAGATGTGCGATGGGTACTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGACATTAAA
GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACT
CCTTATGAAAAAATTTTAAAAAAATCACAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTAGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGC
CATAAAAATGGCATTGACACGGTAGAAATATGAAGATGTACCTAAACCAACCTACCACACTATCG
ATCCAGGGCTTGCGCATCCCACCTCTTTGGCCGGAGTAGTGCCCGCCCGCCTGCTCGTATCGTCA
GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGTTGTGCA
Found at i:2205094 original size:26 final size:26
Alignment explanation
Indices: 2205058--2205110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2205048 GTTGACTGAG
2205058 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2205084 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2205110 G
1 G
2205111 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2206011 original size:26 final size:26
Alignment explanation
Indices: 2205959--2206011 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2205949 GTAGACTTAG
*
2205959 GCATACGAAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTATAA
*
2205985 GCATATGAAGTTCATTC-CTAGTATAA
1 GCATACGAAGTTCATTCAC-AGTATAA
2206011 G
1 G
2206012 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTATAA
Found at i:2207025 original size:894 final size:891
Alignment explanation
Indices: 2204362--2207141 Score: 3974
Period size: 894 Copynumber: 3.1 Consensus size: 891
2204352 GGACCGAGGT
* * * *
2204362 TGTGCACACAAGATGTGCGATGGGTACTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
2204427 AAACCTCGAGAACTCGCACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCC
66 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
2204492 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
131 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
*
2204557 TTAGCTGAATTTTTTTGTGCATGCCTACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCA
196 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCA
* *
2204622 AAACTCCTTATGAAAAAATTTTAAAAAAATCACAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
261 AAACTCCTTTTGAAAAAATTTTAAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
2204687 TAGAAAACGAGTCAT-TCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTT
325 TAGAAAACGAGTCGTCT-TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
2204751 ACAAGCCATAAAAATGGCATTGGCAGGGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACA
389 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACC
* * *
2204816 CTATCGATCCATGGCTTGCGCATCTCGCCTTTCTGGTTGGCGTAGTGCCCGCCCGTCCGCTCGTT
454 CTATCGATCCATGGCTTGCGCATCTCGCCTCTCTGGTCGGCGTAGTGCCCGCCCG-CCGCTCATT
* * * *
2204881 TCGTTGGTTGGCTTTGGCATATGGAGTTCATTCCCAATCTAATATCAGACCAGACTGAGGGTTAC
518 TCGTTGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTAC
* * ** * * *
2204946 GGTAGCAAGATCGGCAGCACATAGAGGGGGACTAGGT-TGATCCCCGGCTTGCGCATCATGCCCC
583 GGTAGCAAGATCGACAGCTCATAGA-GGGGAC-CCGTCTGATCCCCGACTTGCACATCCTGCCCC
* * * * *
2205010 TCTGGCCGACTGAGCGCCCCGTATGCTCTTTTTCGTGGGTTGACTGAGGCATACGGAGTTCATTC
646 TATGGCCGACTGAGC-ACCCGTACGCTC-GTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATT-
* **
2205075 CCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCGGACTGAGGGTTATGGGTGCA
707 CCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCA
* * * * *
2205140 CATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTATTTTCACCCGAGGCACCATCGTCAGAGCA
772 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCA-TCGGGGCACCATCGTCGGAGCA
* *** * * * * *
2205205 TCACCGGAGAACCTGATTGGTGGCGTTGAGGGTTCTGGCGATTGGGGGGGCGAGGGTGGGGG
836 TCATCGGAGAACCTGACCAGCGGCATTGGGGGTTCCGGCGATT---GGGG-GA-CG-GGGGG
* *
2205267 TGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
2205332 AAATCTCGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
66 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
2205397 ATTAAAGTGTCTAAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
131 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
*
2205461 TTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCA
196 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCA
* * * *
2205525 AAACTCCTTTCGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAGGTTTCAAAAATCGTTAAAAA
261 AAACTCCTTTTGAAAAAATTTTAAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * * * *
2205590 TAAAAAACGAGTTGCCTTGCCATGAAGCTTCACATGAAGGATTAAGGGACCATTGTATGAATTTA
325 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
2205655 CAAGCCATAAAAATGGCATTGGCATGGCAAAAATAAGAAGATGTGCCTAAACAAACCTACCACCC
390 CAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCC
* * *
2205720 TATCGAACCATGGCTTGCACATCTCGCCTCTCTGGTCGGCGTAGTGCCCGCCCACCCGCTCATTT
455 TATCGATCCATGGCTTGCGCATCTCGCCTCTCTGGTCGGCGTAGTGCCCGCCC-GCCGCTCATTT
* * * ** * *
2205785 CATTGGTTGGCTTAGGCATACGAATTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCG
519 CGTTGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACG
* * *
2205850 GTAGCAAGATCGACAGCATGCAAAG-GGGGACCCGACCGATCCCCGACTTGCACATCCTGCCCCT
584 GTAGCAAGATCGACAGC-T-CATAGAGGGGACCCGTCTGATCCCCGACTTGCACATCCTGCCCCT
* * *
2205914 GTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTAGACTTAGGCATACGAAGTTCATTCACA
647 ATGGCCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTC-CA
* * * *
2205979 GTCTAAGCATATGAAGTTCATTCCTAGTATAAGATCAGATCGGACCGAGGGTTGCGGGTGCACAT
710 GTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACAT
* * *
2206044 GCTGGGCTCGAGCATGTGCTGGTACCGTA-TTTTTTTCATCTGGGGCACCATCGTCGGAGCATCA
775 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCATC-GGGGCACCATCGTCGGAGCATCA
*
2206108 TCGGAGAACCTGACCAACGGCATTGGGGGTTCCGGCGATTGGGGGACGGGGGG
839 TCGGAGAACCTGACCAGCGGCATTGGGGGTTCCGGCGATTGGGGGACGGGGGG
* * * *
2206161 TGTGCGCACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTGATATCT-GCCCCCTGTTCCTCAT
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCAT
* * * *
2206225 CAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTACTGCCAGTAAC
65 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
2206290 CATTAAAGTGTCTAAGATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTGCACTTCGAGTT
130 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
*
2206355 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
195 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCC
** * *
2206420 AAAACTTTTTTTGAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAACA
260 AAAACTCCTTTTGAAAAAATTTTAAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAA
*
2206485 ATAGAAAACGAGTCGTCTTGCCATTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
324 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* *
2206550 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACC
389 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACC
* * *
2206615 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGTGTAGTGCCCGCCCGCCTGCTCATT
454 CTATCGATCCATGGCTTGCGCATCTCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCC-GCTCATT
* *
2206680 TCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTAT
518 TCGTTGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTAC
** * * * **
2206745 GG-AGCAAGATTAATAGCTCATAGAAGGGACCCGTCTGATCCTCGACTTGCTTATCCTGCCCCTA
583 GGTAGCAAGATCGACAGCTCATAGAGGGGACCCGTCTGATCCCCGACTTGCACATCCTGCCCCTA
* * * *
2206809 TGGCCGGCTGAGCACCCGTACGTTCGTTTCATGGGTTGACTTAGGCATACAGAGTTTATTCCTAG
648 TGGCCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCC-AG
* * * *
2206874 TCTAAGCATACGGAGTTCATTCCCAGTGTATGATCGGACCAGACCGAGGGTTGCGGGTGCACATG
711 TCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATG
* * * *
2206939 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCGTA
776 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCATCGGGGCACCATCGTCGGAGCATCATC
* * * * *
2207004 GAAGAACCTGACCAGCGGCATTGGGGGTTTCGGTGATTGGGGGGCAGGGGG
841 GGAGAACCTGACCAGCGGCATTGGGGGTTCCGGCGATTGGGGGACGGGGGG
*
2207055 TATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
2207120 AAACCTCAAGAACTCACACCCC
66 AAACCTCAAGAACTCACACCCC
2207142 TCTTGCCGAC
Statistics
Matches: 1670, Mismatches: 186, Indels: 49
0.88 0.10 0.03
Matches are distributed among these distances:
893 6 0.00
894 453 0.27
895 82 0.05
896 342 0.20
897 5 0.00
899 1 0.00
900 62 0.04
901 115 0.07
902 11 0.01
903 396 0.24
904 57 0.03
905 140 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCA
AAACTCCTTTTGAAAAAATTTTAAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCT
ATCGATCCATGGCTTGCGCATCTCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCGCTCATTTCG
TTGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGT
AGCAAGATCGACAGCTCATAGAGGGGACCCGTCTGATCCCCGACTTGCACATCCTGCCCCTATGG
CCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCAGTCTAA
GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
ACCTGACCAGCGGCATTGGGGGTTCCGGCGATTGGGGGACGGGGGG
Found at i:2208107 original size:26 final size:26
Alignment explanation
Indices: 2208071--2208123 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2208061 GTTGACTTAG
*
2208071 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2208097 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2208123 G
1 G
2208124 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2209886 original size:26 final size:26
Alignment explanation
Indices: 2209834--2209886 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2209824 GTTGACTTAG
*
2209834 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2209860 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2209886 G
1 G
2209887 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2210408 original size:884 final size:885
Alignment explanation
Indices: 2207154--2212926 Score: 7300
Period size: 898 Copynumber: 6.5 Consensus size: 885
2207144 TTGCCGACAC
* * * * * *
2207154 AGCGCCTGCATGCTCATTTCATGCGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * ** *
2207219 TGGAGTTCATTCCCAATGTAAGATC-AGACTGGACTGAGGGTTGCAGGTGCACATGTTGGGCTCG
66 CGGAGTTCATTCCCAGTGTAAGATCGA-ACTGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCG
* * * * **
2207283 GGCACGTGCTGGTGCCGTATTTTTTTTCACCCGGGGAACCATCGT-CGGAGAACCTGACCGGTAG
130 GGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCATCCGGAGAACCTGACCGGCGG
* * * ** *
2207347 TATTGGGGGTTTCGGCGATTGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGCACTGGAAC
195 CATTGGGGGTTCCGACGATTGGGGG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
2207412 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
259 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
2207477 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
2207542 AATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
389 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * *
2207607 TACAACGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTTTGAAAAAATTTTAAAAAAATCT
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCTAAAAAAATTTTAAAAAAATCC
* * *
2207671 CGAACCGTAGAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCA
518 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
2207736 CATGAAGGCTTAAAGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAG
583 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
*
2207801 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTC
648 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * * * *
2207866 -GACCGGCGTAGTGCCC-ACCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGTAGTTCATTC
713 TGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * *** * * **
2207929 CTAGTCTAAGATCAGA-TCGGACCAAGGGTTGCACCAGCAAGATCAACAGCACATAGAGTAGGAC
778 CCAGTCTAAGATCAGACT-GGATCAAGGGTTGTGGCAGCAGGATCGACAGCACATAGAGGGGGAC
* * *
2207993 CCGGTCGATCCCCGACTTGCACATCCTGCCCCTCTGGCCGGCTG
842 CCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * *
2208037 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
2208102 CGGAGTTCATTCCCAGTGTAAGATCAGATC-AGACCGAGGGTTGCGGGTGCACATGCTGGGCTTG
66 CGGAGTTCATTCCCAGTGTAAGATC-GAACTGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCG
* * * * *
2208166 GGCATGTGCTGGTGCCACA-TTTTTTTCACCCGGGGCACCA--ATGCCAGAGCATC-G-CCGG-T
130 GGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCAT-CCGGAGAACCTGACCGGCG
**
2208225 G-ATTGGGGG----G-C---------GGGGGGTGTGTACACATGATGTGC-ACTGGGTGCTGGTA
194 GCATTGGGGGTTCCGACGATTGGGGGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTA
* *
2208274 CTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
258 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
2208339 ATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
323 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
2208404 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
388 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
** **
2208469 ATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTGCTTCTGAAAAAAATTTT-AAAAAATC
453 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCT-AAAAAAATTTTAAAAAAATC
* ** * *
2208533 CTGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTT
517 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
2208598 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
582 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* * ** * *
2208663 AATATGAAGATGTGCCTAATCTCATGTACCACCCTATCGATCCACGGCTTTCGCATCCCGTCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
* ** * * *
2208728 CTGGCTGACGTAGTAACCGCCCGACTGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
712 CTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * **
2208793 CCCAGTCTAAGATCGGAC-CGAACTGAGGGTTGCGGCAGCAGGATTGGTAGCACATAGAGGGGGA
777 CCCAGTCTAAGATCAGACTGGATC-AAGGGTTGTGGCAGCAGGATCGACAGCACATAGAGGGGGA
* * * *
2208857 CCCGATCGTTCCCCGACTTGTGCATCCTGCCCCTCTGGCCAGCTG
841 CCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * * *
2208902 AGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAGGCATA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * *
2208967 CGGAGTTCATTCCTAGTGTAAGATTGGACAGGACCGA-GGTTTTCGGGTGCACATGTTGGGCTCG
66 CGGAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTGT-GGGTGCACATGCTGGGCTCG
* * * *
2209031 GGCATGTGCTGGTGCCGCATTTTCTTTCGCTCGAGGCACCATCGCCGGAGCATCACCGGAGAACC
130 GGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCAT--------CAT--CCGGAGAACC
* * ** * * **
2209096 TAACCGACGGCATTGGGGGTTTTGGCGATTGAAGAGGCGGGGGGTGTGCGCACATGATGTATGAT
185 TGACCGGCGGCATTGGGGGTTCCGACGATTG--G-GGGGGGGGGTGTGCGCACATGATGTGCGAT
* *
2209161 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTTGAGAACTCACACCC
247 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
2209226 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTTAAGTGTATGAAATGGGG
312 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
2209291 ACACTTTTTTCAAATGGTCCCAAAATCCTTTACGCTTCGAGTTTTTAGCTGAAATTTTTTGTGCA
377 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** * *
2209356 TGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTAGGGCCAAAACTCCTTCTAAAAAAATTT
442 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTAAAAAAATTT
* * *
2209421 TAAAAAAATCCCGAACCGTAAAAGGTTTCAAAATTCGTGAAAAATAGAGAACGAGTCGTCTTGCC
507 TAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
2209486 ATGAAACTTCACATGAAGGCTTAGGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTG
572 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
2209551 GCATGGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCG
637 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*** * * * * * * * *
2209616 TCTTACCTCTCTGGCCGGCGTAGTGTCTGCCTGCCCGCTCGTTTCATTGGTTGGCTTAGCCATGC
702 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
2209681 GGAGTTCATTCCCAATCTAAGA-CTAGACTGGATCAAGGGTTGTGGTAGCAGGATCGGCAGCACG
767 GGAGTTCATTCCCAGTCTAAGATC-AGACTGGATCAAGGGTTGTGGCAGCAGGATCGACAGCACA
* * *
2209745 TAGAGGGGGACCCGACCGATCCCCGGCTTGGGCATCCTGCCCCTCTGGCCAGCTG
831 TAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* *
2209800 AGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
*
2209865 CGGAGTTCATTCCCAGTGTAAGATCGAACTGAACCGAGGGTTGTGGGTGCACATGCTGGGCTCGG
66 CGGAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGG
* * *
2209930 GCATGTGCTGGTGCCACATTTTTTTTCACACGGGGCACCATC-TCCGGAGAACCTGACCAGCGGC
131 GCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCATCCGGAGAACCTGACCGGCGGC
* * * *
2209994 ATTGGGGGTTCCGACGATTGGGGGTGGGGGTGTGCGCACATGATCTGCAATGGGTGCTGGTACTG
196 ATTGGGGGTTCCGACGATTGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
2210059 GGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCCCACCCCCTTAAAGAGCATT
261 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
2210124 TGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AA
326 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
2210188 TGGTCAACAAAATCCTGTACAC-TCGAGTTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
391 TGGTC-ACAAAATCCTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * **
2210252 TACAAAGATCATGTCTACTTAGTTTGGGGCCAAAACACCTTCTAAAAAAATTTTAAAAAAATCCC
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTAAAAAAATTTTAAAAAAATCCC
*
2210317 GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
519 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
2210382 ATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGAAGGGCAGAAA
584 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
* * * *
2210447 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCTGCCTTTCT
649 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* *
2210512 GGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCC
714 GGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** ** * * * * **
2210577 TTGTCTAAGATTGGA-TCGGATCGAGGGTTGTGGCAGTAGGATTG---GTACGCAGA-GGGGACC
779 CAGTCTAAGATCAGACT-GGATCAAGGGTTGTGGCAGCAGGATCGACAGCACATAGAGGGGGACC
* * * * *
2210637 TGATCAATCCTCGGCTTGCACATCCTGCCCCTCTGGCTGGCTG
843 CGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* *
2210680 AGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *
2210745 CGGAGTTAATTCCCAATGTAACATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGG
66 CGGAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGG
* * *
2210810 GCATGTGCTGGTGCCGCATTGTTTTTCGCCCGGGGCACCATCGCCAGAGCATCGTCGAAGAACCT
131 GCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCAT--------CATC--CGGAGAACCT
*
2210875 GACCGGCGGCATTGGGGGTTCCGACGATTGGGGGGCGGGGGGGTGTGCGGACATGATGTGCGATG
186 GACCGGCGGCATTGGGGGTTCCGACGATT--GGGG-GGGGGGGTGTGCGCACATGATGTGCGATG
*
2210940 GGTGCTGGTACTTGGCCCTTATATTGG-CCTCTATCCCTCATCAAACCTC-ATGAACTCACACCC
248 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCC
* *
2211003 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGAGTCTGAAATGGGG
312 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * *
2211068 ACACTTTTTTCAAATGGTCACAAAATCCTATACACTTTGAGTTTTTGGTTGAATTGTTTTGTGCA
377 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
2211133 CGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTTGAAAAAATTT
442 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTAAAAAAATTT
* * * * *
2211198 TAAAAAAATCTCGAACCGAAAAAAGTTTCAAAAGTTGGGAAAAATA-AAGAACGAGTCGTCTTGC
507 TAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA-AACGAGTCGTCTTGC
*
2211262 CATGAAACTCCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
571 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
2211327 GGCATGGCTGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
636 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * * * * *
2211392 ATCCCGCCTCTCTAGTTGGCGCAGTGCCCGCCCGCCCACTCGTTTTGTCGGTTGTCTTAGGCATA
701 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * * * * *
2211457 CGGAGTTGATTTCCAATCTAAGATCAGACCGGAGT-GAGGGTTGTGGTAGTAGGATCAATAACAC
766 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-TCAAGGGTTGTGGCAGCAGGATCGACAGCAC
* ** * * * * *
2211521 ATAGAGGGGGACCTGGCCGATCCCCAGCTTGCGTATCCTACCCTTCTGGCTGGCTG
830 ATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * * *
2211577 AGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTGTAAGCATA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * ** * * * *
2211642 CGGAGTGCATTCCCGGCATAAGATCGGA-TCAGACCGAGGGTTGTGGGCGCACATGCTGGGCTCA
66 CGGAGTTCATTCCCAGTGTAAGATCGAACT-GGACCGAGGGTTGTGGGTGCACATGCTGGGCTCG
* *
2211706 GGCATGTGCTGGTGCCGCA-TTTTTTTCATCCGGGGCACCACGGCGAAGCATCGCTGGAGAACCT
130 GGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGG---CAC--C--ATCATC-C-GGAGAACCT
* * * * *
2211770 GACCGGCAGCATTGGGTGTTCC-AGCGATTGGAGGGGCAAGGGGTGTGCGTACATGATGTGCAAT
186 GACCGGCGGCATTGGGGGTTCCGA-CGATTGG-GGGG--GGGGGTGTGCGCACATGATGTGCGAT
* * * * * * *
2211834 AGGTACTAGTACTCGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACAACC
247 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
2211899 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
312 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
2211964 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGATTTTTTTGCTGAATTTTTTTGTGCA
377 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * * *
2212029 TGCCAAAAAAAATACAAGGATCTTGTCTTCCAAGTTTGGGGCCAAAACACCTTTTGAAAAAATTT
442 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTAAAAAAATTT
* * *
2212094 TAAAAAAATCCCGAACCGTAAAAAGTTTCCAAAATTGTGAAAAATATTAAAACGAGTCGTCTTGC
507 TAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA-GAAAACGAGTCGTCTTGC
* * * *
2212159 CATGAAACTTCACATGAAGGCCTAAGGGACCATTGCATGAATTTAGAAGCCATAAAAATGGTATT
571 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
2212224 GGCACT-ACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCG
636 GGCA-TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
2212288 CATCCCGTCTCTCTGGTCGACGTAGT-CTCCGCCCGCCTGGTTGTTTCGTCGGTTGGCTTAGGCA
700 CATCCCGCCTCTCTGGCCGACGTAGTGC-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
2212352 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTATGGCAGCAGGATCGACAGC
764 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCA-AGGGTTGTGGCAGCAGGATCGACAGC
* * ** * * *
2212416 ACGTCGAGGGGGACCCGATCGATCCTTGGCTTGCGTATCCTGCCTCTCTGGTCGGCTG
828 ACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
** * *
2212474 AGCGCCCGCACTTTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * ** *
2212539 CAGAGTTCATTCCCATTGTAAGATC-AGACTGGATTGAGGGTTGCGGGTGCACATGCTGGGCTCG
66 CGGAGTTCATTCCCAGTGTAAGATCGA-ACTGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCG
** * ** * *
2212603 ACCATATGCTGGTGCCGCATTTTTTTTCGTCCGAGGCACCATCACCAGAGCATCATCGAAGAACC
130 GGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCAT--------CATC--CGGAGAACC
* * *
2212668 TGACCGACGGCATT-AGGGTTCCGATGATTGCGGGGCGGGGGGTGTGCGCACATGATGTGCGATG
185 TGACCGGCGGCATTGGGGGTTCCGACGATTG-GGGG-GGGGGGTGTGCGCACATGATGTGCGATG
* *
2212732 GGTGCTGGTACTT-GCCCTTATATTGG-CCCCTATACCTCATCAAACCTTGAGAACTCACACCCC
248 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
2212795 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCAGAAATGGGGA
313 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
2212860 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTTTTTGTGCAT
378 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
2212925 GC
443 GC
2212927 AAGGGGGGAC
Statistics
Matches: 4251, Mismatches: 524, Indels: 218
0.85 0.10 0.04
Matches are distributed among these distances:
862 1 0.00
863 444 0.10
864 30 0.01
865 249 0.06
866 17 0.00
873 1 0.00
874 1 0.00
876 2 0.00
877 7 0.00
878 8 0.00
879 4 0.00
880 205 0.05
881 16 0.00
882 26 0.01
883 139 0.03
884 531 0.12
885 3 0.00
886 1 0.00
887 35 0.01
888 1 0.00
889 3 0.00
890 1 0.00
891 38 0.01
892 3 0.00
893 478 0.11
894 67 0.02
895 245 0.06
896 284 0.07
897 617 0.15
898 753 0.18
899 38 0.01
900 1 0.00
901 1 0.00
903 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCATCCGGAGAACCTGACCGGCGGC
ATTGGGGGTTCCGACGATTGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTAAAAAAATTTTAAAAAAATCCCGA
ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
CCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACTGGATCAAGGGTTGTGGCAGCAGGATCGACAGCACATAGAGGGGGACCCGA
TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
Found at i:2211663 original size:26 final size:26
Alignment explanation
Indices: 2211611--2211663 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
2211601 GTTGACTTAG
* * **
2211611 GCATACTGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTGCATTCCCAGCATAA
*
2211637 GCATACGGAGTGCATTCCCGGCATAA
1 GCATACGGAGTGCATTCCCAGCATAA
2211663 G
1 G
2211664 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGCATAA
Found at i:2213053 original size:26 final size:26
Alignment explanation
Indices: 2213015--2213067 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2213005 GTTGACTTAG
2213015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2213041 GCATACGGTGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2213067 G
1 G
2213068 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2213390 original size:506 final size:503
Alignment explanation
Indices: 2212486--2213432 Score: 1323
Period size: 506 Copynumber: 1.9 Consensus size: 503
2212476 CGCCCGCACT
* *
2212486 TTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
1 TTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
* * * ** * *
2212551 CCATTGTAAGATCAGACTGGATTGAGGGTTGCGGGTGCACATGCTGGGCTCGACCATATGCTGGT
66 CCAGTGTAAGATCAAACCGGATCCAGGGTTACGGGTGCACATGCCGGGCTCGACCATATGCTGGT
*
2212616 GCCGCATTTTTTTTCGTCCGAGGCACCATCACCAGAGCATCATCGAAGAACCTGACCGACGGCAT
131 GCCGCATTTTTTTTCGTCCGAGGCACCATCACCAGAGCATCACCGAAGAACCTGACCGACGGCAT
* **
2212681 TAGGGTTCCGATGATTGCGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
196 TAGGGTTCCGACGATT----GGCGGGGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTACTTG
** *
2212746 CCCTTATATTGGCCCCTATACCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
257 CCCTTATATTGGCCCCTATACCTCATCAAACCTCAACAACTCACACCCCCTTAAAGAGCATTTGA
* *
2212811 GATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGG
322 GATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCAGAAATGGGAACACTTTTTTCAAATGG
* * *
2212876 TCACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTTTTTGTGCATGCAAGGGGGGACCCGG
387 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAGGGGGGACCCGG
2212941 CCGATCCCCGACTTACGCATCCTATCCCTCTGGCCGACTTAGCTCCCGTATG
452 CCGATCCCCGACTTACGCATCCTATCCCTCTGGCCGACTTAGCTCCCGTATG
* * *
2212993 TTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGTGTTCATTC
1 TTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
* *** *
2213058 CCAGTGTAAGATCAAACCGGA-CCATGGGTTACGGGTGCACATTCCGGGCTCGGGTATGTGCTGG
66 CCAGTGTAAGATCAAACCGGATCCA-GGGTTACGGGTGCACATGCCGGGCTCGACCATATGCTGG
* ** * ** * * * * *
2213122 TGCCGTATTGTTTTTTTTTGCCGTGGGCACCATCGTCGGAGGATCACCGGAGAACCTGATCGGTC
130 TGCCGCATT-TTTTTTCGT-CCG-AGGCACCATCACCAGAGCATCACCGAAGAACCTGA-CCGAC
*
2213187 -GCATTGGGGTTCCGACGATT-G-GGGGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTACTT
191 GGCATTAGGGTTCCGACGATTGGCGGGGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTACTT
2213249 GGCCCTTATATTGGCCCCCTAT-CCTTCATCAAA-CTACAACAACTCACACCCCCTTAAAGAGCA
256 -GCCCTTATATTGG-CCCCTATACC-TCATCAAACCT-CAACAACTCACACCCCCTTAAAGAGCA
*
2213312 TTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTA-AAATGGGAACACTTTTTTC
317 TTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTC-AGAAATGGGAACACTTTTTTC
* *
2213376 AAATGGTCACAAAATCCTGTACAGTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGC
381 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
2213433 CATCAACAAT
Statistics
Matches: 386, Mismatches: 44, Indels: 21
0.86 0.10 0.05
Matches are distributed among these distances:
504 39 0.10
505 18 0.05
506 151 0.39
507 119 0.31
508 7 0.02
509 3 0.01
510 46 0.12
511 3 0.01
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (503 bp):
TTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
CCAGTGTAAGATCAAACCGGATCCAGGGTTACGGGTGCACATGCCGGGCTCGACCATATGCTGGT
GCCGCATTTTTTTTCGTCCGAGGCACCATCACCAGAGCATCACCGAAGAACCTGACCGACGGCAT
TAGGGTTCCGACGATTGGCGGGGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTACTTGCCCT
TATATTGGCCCCTATACCTCATCAAACCTCAACAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTACCAATAGCCATTAAAGTGTCAGAAATGGGAACACTTTTTTCAAATGGTCAC
AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAGGGGGGACCCGGCCGA
TCCCCGACTTACGCATCCTATCCCTCTGGCCGACTTAGCTCCCGTATG
Found at i:2213945 original size:26 final size:26
Alignment explanation
Indices: 2213909--2213960 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2213899 TTGACTTAGC
2213909 CATACGGAGTTCATTCCAAGTCTAAG
1 CATACGGAGTTCATTCCAAGTCTAAG
* *
2213935 CATACGGAGTTCATTCCCAGTGTAAG
1 CATACGGAGTTCATTCCAAGTCTAAG
2213961 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCAAGTCTAAG
Found at i:2214846 original size:26 final size:26
Alignment explanation
Indices: 2214806--2214858 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2214796 GTTGAGTTAG
2214806 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
* * * *
2214832 GCATATGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGATCATTCCCAGTCTAA
2214858 G
1 G
2214859 GTCGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:2214951 original size:898 final size:895
Alignment explanation
Indices: 2212928--2216374 Score: 4287
Period size: 898 Copynumber: 3.9 Consensus size: 895
2212918 TGTGCATGCA
* * ** ** * * * * *
2212928 AGGGGGG-ACCCGGCCGATCCCCGACTTACGCATCCTATCCCTCTGGCCGACTTAGCTCCCGTAT
1 AGGGGGGAACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGG-CGGCTGAGCGCCCGCAC
* * *
2212992 GTTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGTGTTCATT
65 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * * *
2213057 CCCAGTGTAAGATCAAACCGGACCATGGGTTACGGGTGCACATTCCGGGCTCGGGTATGTGCTGG
130 CCCAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGG
** * * *
2213122 TGCCGTATTGTTTTTTT--TTGCCGTGGGCACCATCGTCGGAGGATCAC-CGGAGAACCTGATCG
195 TGCCACATT-TTTTTTTCGTT--CG-GGGCACCATCGCCGGAGCATC-CTCGGAGAACCTGA-CC
* **
2213184 GTC-GCATTGGGGTTCCGACGATT----GG--GGGGGTGTGCGCACATGATGTAAGATGGGTGCT
254 GACGGCATTGGGGTTCCGACGATTGGGGGGCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
2213242 GGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAA-CTACAACAACTCACACCCCCTTAA
319 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CAAGAACTCACACCCCCTTAA
* *
2213306 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGAACACTT
383 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* * *
2213371 TTTTCAAATGGTCACAAAATCCTGTACAGTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAT
448 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** * * *
2213436 CAACAATACAAGGATCACATCTACCAAGTTTGTGGCCAAAACTCCTTCAAAAAAAATTATAAAAA
513 AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAA
* *
2213501 AATCCCAAACCGTAAAAAGTTTCAAAAATCAT-AAAAAATAGAAAACGAGTCATCTTGCCATGAA
578 AATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAA-AGAAAACGAGTCGTCTTGCCATGAA
*
2213565 ACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
642 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * *
2213630 GCCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCG
707 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
2213695 TCTCTCTGGTCGGCTTAGTGCCCGCTC-ACCTGCTCGTTTCGTC-AGTTGGCTTAGGCATACGGA
772 TCTCTCTGGCCGGCATAGTGCCCGCCCGACC-GCTCGTTTCGTCGA-TTGGCTTAGGCATACGGA
* * * * * **
2213758 GTTAATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGATC-GACAGCATGT
835 GTTCATTCCCAGTCTAAGATCAGACCGG-CTGAGGGTTGTGGTAGTAGGATCAG-TAGCACAT
** * * *
2213820 AGGGTGGGAA-ATGGCCGATCCCCGGCTTGTGCATCTTGCCCCTTTGGCCGGCTGAGCGCCCGCA
1 AGGG-GGGAACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGG-CGGCTGAGCGCCCGCA
* *
2213884 CGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCAT
64 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * ** * * * * * *
2213949 TCCCAGTGTAAGATCAGACCAGATCGAGCATGGCAGGTACACATGCTGGGCTTAAGCATGAGCTG
129 TCCCAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTG
*
2214014 GTGCCACATTTTCTTTTCG-TCGGGTGCACCATCGCCGGAGCATCACT-GGAGAACCTGACCGAC
194 GTGCCACATTTTTTTTTCGTTCGGG-GCACCATCGCCGGAGCATC-CTCGGAGAACCTGACCGAC
* *
2214077 GGCATTGCGGTTCCGGCGATTGGGGGGGCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
257 GGCATTGGGGTTCCGACGATT-GGGGGGCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* ** *
2214142 TACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGA
321 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
* *
2214207 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTT
386 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
2214272 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
451 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* *
2214337 AAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAACTCTTTCTAAAAAAATTTTAAAAAAAT
516 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAAT
** * *
2214402 CTTGAACCGTAAAAAGTTTTAAAAATCATGAAAAAAAGAAAACAAGTCGTCTTGCCATGAAACTT
581 CTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * *
2214467 CACATGAAGGGTTAAGGGACCATTGTACGAATTTGCAAGCCACAAAAATGGCATTGGCACAGTAG
646 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAG
* * * *
2214532 AAATATGAAGATTTGCCTAAACTCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTTTC
711 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
2214597 ACTGGCCGACGTAGTGCCCGCCCGTCCGCTTGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
776 TCTGGCCGGCATAGTGCCCGCCCGACCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
*
2214662 TCCCAGTCTAAGATCAGACCAGGCTGAGGGTTGTGATAGTAGGATCAGTAGCACAT
841 TCCCAGTCTAAGATCAGACC-GGCTGAGGGTTGTGGTAGTAGGATCAGTAGCACAT
*
2214718 AGGGGGGAACCCGACCAATCCCCGGCTTGTGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCAC
1 AGGGGGGAACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGG-CGGCTGAGCGCCCGCAC
* * * * *
2214783 ACTCATTTCGTGGGTTGAGTTAGGCATACGGAGATCATTCCCAGTCTAAGCATATGGAGTTCATT
65 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
2214848 CCTAGTGTAAGGTCGGACC-GACCCAAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTG
130 CCCAGTGTAAGATCAGACCAGA-CCAAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTG
* * * * * * *
2214912 CTGTCATATTTTTTTTTCGTTTGGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGACCGATGG
194 GTGCCACATTTTTTTTTCGTTCGGGGCACCATCGCCGGAGCATCCTCGGAGAACCTGACCGACGG
* * * *
2214977 CATTGGGGTTTCGACAATTGGGGGGGTGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGT
259 CATTGGGGTTCCGACGATT-GGGGGG-CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
2215042 ACTTGGCCCTTGTATTGGTCACCTATCCCTCATCAAACCTCGAGTACTCACACCCCCTTAAAGAG
322 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
* *
2215107 CATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCGTTAAAGTGTCTAAAATGGGGACAC-TTTTT
387 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* *
2215171 CAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAA
452 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * * * *
2215236 AATACAAGGATCATGTCTACCGAGTTTGGGGCCAAAAGTCCTTCTGAAACAATTTTTAAAAAATC
517 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATC
* * *
2215301 TCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
582 TCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * ** *
2215366 ACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGTCATTGGGATGGCAAA
647 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGA
* * ** ** * *
2215431 AATATGAAGATGTGCCAAAACCCACCTACCACCTTATCGATCCACAACTTGCTTATCTCG-CCCT
712 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * * *
2215495 CTAGCCGGCATAGTGCCCACCCGCCCGCTCATTTCGTCGGTTAGCTTAGCCGTACGGAGTTCATT
777 CTGGCCGGCATAGTGCCCGCCCGACCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATT
* * *
2215560 CCCAGTCTAAGAAT-GGACCGGATCGAGGGTTGTGGTAGCAGGATCAGTAGCACACT
842 CCCAGTCTAAG-ATCAGACCGGCT-GAGGGTTGTGGTAGTAGGATCAGTAGCACA-T
* * * * * * *
2215616 -GGGGGG-ACCC-AGTCGATCCTCGACTTGGGCATCCTGCCCCTCTGGCATGTTGAGCGCCTGCA
1 AGGGGGGAACCCGA-CCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGC-GGCTGAGCGCCCGCA
** * * * *
2215678 CGCTCGTTTCGTGTCTTGACTTTGGCATACGGAGTTCATTGCTAGTGTAAG-AT-C-G-G---A-
64 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
2215735 --CC-------G----GACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAGGCATGTGCTA
129 TCCCAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTG
** * * *
2215787 GTGCCACA-TTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACAG
194 GTGCCACATTTTTTTTTCGTTCGGGGCACCATCGCCGGAGCATCCTCGGAGAACCTGACCGACGG
* * * * * *
2215851 CATTGGGGTTCTGGCGATTTGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGCTGTTGGTAC
259 CATTGGGGTTCCGACGATTGGGGGGCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
2215916 TTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
324 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* * *
2215981 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCA
389 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
** * *
2216046 AACAGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATATTTTTTGTGCATGCCAATAAAA
454 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAAAAAAA
* *
2216111 ATACAAGGATCACAGTCTACCAAGTTTGGGGCCAAAA-TCCTTCTCAAAAAATTTTAAAAAAATC
518 ATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATC
** * * * * *
2216175 TTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCCTCTTGCCATGAAACTTC
582 TCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
2216240 ACATGAAGGCTTAAGGGACCATTTTATGAATTTACATGCCATAAAAATGGCATTGGCAC-GACA-
647 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAG-CAG
* *
2216303 AGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATCCCGCCT
711 A-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
2216368 CTCTGGC
775 CTCTGGC
2216375 ATTTCATCGG
Statistics
Matches: 2225, Mismatches: 293, Indels: 91
0.85 0.11 0.03
Matches are distributed among these distances:
872 146 0.07
873 52 0.02
874 288 0.13
875 77 0.03
876 2 0.00
879 1 0.00
886 1 0.00
889 1 0.00
890 5 0.00
891 50 0.02
892 11 0.00
893 160 0.07
894 1 0.00
895 4 0.00
896 90 0.04
897 112 0.05
898 1056 0.47
899 168 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (895 bp):
AGGGGGGAACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGT
GCCACATTTTTTTTTCGTTCGGGGCACCATCGCCGGAGCATCCTCGGAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATTGGGGGGCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCTCAA
ACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCATAGTGCCCGCCCGACCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGGCTGAGGGTTGTGGTAGTAGGATCAGTAGCACAT
Found at i:2221847 original size:26 final size:26
Alignment explanation
Indices: 2221817--2221869 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2221807 GGTCTCACGG
2221817 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
2221843 GCATATGGAGTTTATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2221869 G
1 G
2221870 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2222746 original size:26 final size:26
Alignment explanation
Indices: 2222716--2222768 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2222706 GTTGACTTAG
*
2222716 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
2222742 GCATATGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2222768 G
1 G
2222769 ATCAGACTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2224057 original size:871 final size:865
Alignment explanation
Indices: 2221843--2224564 Score: 3361
Period size: 897 Copynumber: 3.1 Consensus size: 865
2221833 CCCAGTCTAA
* * *
2221843 GCATATGGAGTTTATTCCCAGT-GTAAGAT-T-GGATCGGACCGAGGGTTGTGGGTGCACATGCT
1 GCATACGGAGTTCATTCCCAGTAGTAAG-TCTCGGATCGGACCGAGGGTTGCGGGTGCACATGCT
* * * * * *
2221905 GGGCTCGAGCATGTGCTCGTGCCATATTTTTTTTTGCCCAGGGCACCATCGTCGGAGCATCGCTG
65 GGGCTCGAGCATGTGCTGGT-CCAGAATTTTTTTTGCCCAGGGCACCATCATCGGAGCATCAC-C
* * *
2221970 GAAGAACCTGATCGGCGGCATTGGGGATCCGACGATTGGGGGGGTGGGGGGTGTGCGCACATGAT
128 GAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGTGTGGGGGGTGTGCGCACATGAT
* * *
2222035 GTGCGATGGGTGCTGGCACATGGCACTTATATT-GGCCCCTTATCCCTCTTCAAACCTCGAGAAC
193 GTGCGATGGGTGCTGGCACTTGGCACTTATATTGGGCCCC-TAT-CCTCATCAAACCTCAAGAAC
2222099 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
* * *
2222164 AAATGGGGACATTTTTTTCAAATGGTCACAAAACCCTGTACACTTTGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTT
* *
2222229 TTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCA
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-C-
* *
2222294 AAAAAAATTTT-AAAAAATCACGAACCGTACAAAGTTTCAAAAATCATGAAAAATAGAAAACAAG
448 TAAAAAATTTTAAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAG
2222358 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
512 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
2222423 AATGGCATTGGCATGGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCAGCCTATTGATCCAC
577 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
2222488 GGCTTACGTATCCCGCCTTTCTGGCCGGCGTAGTGCCTAC-CT-GCCCGTTCGTTTCGTCGGTTG
642 GGCTTGCGCATCCCGCCTCTCTGACCGGTGTAGTGCC--CGCTCGCCCGGTCGTTTCGTCGGTTG
* * * * * *
2222551 GCTGAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATTGATGGTTGCGGTAGTAGGA
705 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACAGTAGTAGGA
** * * * *
2222616 TTGGTAGAACACAGGGGGGGACCCAACCGATCCCCGGCATGCGCATCCTGCCCCTCTGGCCGGCT
770 TTGACAAAACACA-GGGGGGACCGATCC-AT-CCCGGC-TGCGCATCCTGCCCCTCTGGCCCGCT
*
2222681 GAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAG
831 GAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
*
2222716 GCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTGTAAGATCAGACTGTAT
1 GCATACGGAGTTCATTCCCAG--T-AG----T-AAG-TC--T--C---G---GATC-G---G-AC
** * * * * * **
2222781 CGAGCATTACGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCAGCA-TTTTTTCCCCCAGGG
42 CGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTCCAGAATTTTTTTTGCCCAGGG
* * * *
2222845 CACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATTGGGGGTC
107 CACCATCATCGGAGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGTG
* * * *
2222910 CGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGGCACTTATTTTGGCCCCCTATG
172 TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCACTTATATTGGGCCCCTAT-
* *
2222975 CCTCATCAAACCCTCAAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAAGTTTGCTAC
236 CCTCATCAAA-CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
* ** * *
2223040 CAGTAACTGTTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
* *
2223105 TCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAGTACAAGGATCATGTCTACCAAGT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGT
* * *
2223169 TTGGGACCAAAACTCCTTCTTAAAAAATTTTTAAAAAAATCCTGAATCATAAAAAGTTTCAAAAA
429 TTGGGGCCAAAACTCCTTC-TAAAAAA-TTTTAAAAAAATCC-GAACCGTAAAAAGTTTCAAAAA
* * *
2223234 TCGTGAAAAATAAAAAACAAGTCGTGTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
491 TCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
*
2223299 TATGAATTTACAAGCCATAGAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
2223364 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGACCGATGTAGTGCCCGCTCGT
621 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGACCGGTGTAGTGCCCGCTCGC
* * *
2223429 CCGGTCGTTTTGTCGGCTGGCTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCGGACT
686 CCGGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT
* * *
2223494 GAGGGTCACAGTAGCAGGATTGACAAAACACAGGTGGGGACTCGGTCCATCCCTGGCTTGCGCAT
751 GAGGGTTACAGTAGTAGGATTGACAAAACACAGG-GGGGAC-CGATCCATCCC-GGC-TGCGCAT
*
2223559 CCTGCCCCTCTGGCCCGCTGAGCGCCTGCACGCTTGTTTCGTGGGTTGACTTAG
812 CCTGCCCCTCTGGCCCGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
*
2223613 GCATACGGAGTTCATTCCCAGT-GTAAG-CTCGGATCAGGA-CGAGGGTTGTGGGTGCACAAT-C
1 GCATACGGAGTTCATTCCCAGTAGTAAGTCTCGGATC-GGACCGAGGGTTGCGGGTGCAC-ATGC
* * *
2223674 TAGGCTCGAGCATGTGCTGGTACCA-AATTTTTTTTGCCCGGGGCACCATCATCTGAGCATCACC
64 TGGGCTCGAGCATGTGCTGGT-CCAGAATTTTTTTTGCCCAGGGCACCATCATCGGAGCATCACC
* *
2223738 GAAGAACCTGACCGACGGCATTGGGGTTCCTG-CAATTAGGGGGTGTGGGGGGTGTGCGCACATG
128 GAAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATT-GGGGGTGTGGGGGGTGTGCGCACATG
* * * *
2223802 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCTCTCATCAAACCTCTAGAA
191 ATGTGCGATGGGTGCTGGCACTTGGCACTTATATTGGGCCCCTATC-CTCATCAAACCTCAAGAA
* * * * *
2223867 CTCACA-CCCCTTAAAGCGCATTTGAAATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
* *
2223931 GAAATGGGGACACTTTTTTCAAGTGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTG
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
2223996 TTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTA
* **
2224061 AAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTC
450 AAAAATTTTAAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTC
* *
2224126 GTCTTGCCTTGAAACTTCACATGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * *
2224191 TGGCATTGGCACAGTAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGG
579 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
2224256 CTTGCACATCTTCGGCCTCTCTGTTCCGGTGTAGTGCCCGTTCCGCCCGCGTCGTTTCGTCGGTT
644 CTTGCGCATC--CCGCCTCTCTG-ACCGGTGTAGTGCCCGCT-CGCCCG-GTCGTTTCGTCGGTT
* * * * *
2224321 GGCCTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTACAGCAGTAGG
704 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACAGTAGTAGG
* * ** * * *
2224386 ATCGACAACACGTAAGGGGGACCCGATCGAT--C--CT-C-C-TCCTGCCCCTCTGG-CCGATTG
769 ATTGACAAAACACAGGGGGGA-CCGATCCATCCCGGCTGCGCATCCTGCCCCTCTGGCCCG-CTG
** * * *
2224443 AAAGCCCGCACGCTCATTTCGTAGGTTGACTTAG
832 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
** *
2224477 GCATACGGAGTTCATTCCCAGTCCTAAGAT-TGGGATTCGGACGCGAGGGTTGCGGGTGCACAAT
1 GCATACGGAGTTCATTCCCAGTAGTAAG-TCTCGGA-TCGGAC-CGAGGGTTGCGGGTGCAC-AT
*
2224541 GCTGGGCTCCGGGCATGTGCTGGT
62 GCTGGGCT-CGAGCATGTGCTGGT
2224565 GCNNNNNNNN
Statistics
Matches: 1596, Mismatches: 193, Indels: 123
0.83 0.10 0.06
Matches are distributed among these distances:
863 3 0.00
864 66 0.04
865 5 0.00
866 8 0.01
867 3 0.00
868 21 0.01
869 185 0.12
870 22 0.01
871 205 0.13
872 102 0.06
873 109 0.07
874 82 0.05
875 1 0.00
876 6 0.00
877 1 0.00
879 1 0.00
881 1 0.00
882 5 0.00
884 1 0.00
885 1 0.00
886 1 0.00
888 3 0.00
889 1 0.00
891 1 0.00
893 1 0.00
894 4 0.00
895 15 0.01
896 167 0.10
897 532 0.33
898 6 0.00
899 37 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (865 bp):
GCATACGGAGTTCATTCCCAGTAGTAAGTCTCGGATCGGACCGAGGGTTGCGGGTGCACATGCTG
GGCTCGAGCATGTGCTGGTCCAGAATTTTTTTTGCCCAGGGCACCATCATCGGAGCATCACCGAA
GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGTGTGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGCACTTGGCACTTATATTGGGCCCCTATCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAT
TTTAAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGC
CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGCCTCTCTGACCGGTGTAGTGCCCGCTCGCCCGGTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACAGTAGTAGGATTGACAAAACA
CAGGGGGGACCGATCCATCCCGGCTGCGCATCCTGCCCCTCTGGCCCGCTGAGCGCCTGCACGCT
CGTTTCGTGGGTTGACTTAG
Found at i:2225868 original size:26 final size:26
Alignment explanation
Indices: 2225832--2225884 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2225822 CCGGTCCGAT
*
2225832 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
2225858 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2225884 C
1 C
2225885 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2226746 original size:26 final size:26
Alignment explanation
Indices: 2226717--2226769 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2226707 CTGGTCCGAC
2226717 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
2226743 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2226769 C
1 C
2226770 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2228579 original size:26 final size:26
Alignment explanation
Indices: 2228541--2228593 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2228531 CTGGTCCGAT
2228541 CTTACACTAGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* * *
2228567 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
2228593 C
1 C
2228594 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:2228937 original size:896 final size:894
Alignment explanation
Indices: 2225567--2231586 Score: 7408
Period size: 896 Copynumber: 6.7 Consensus size: 894
2225557 NNNNNNNNNN
2225567 CTGT-AAATCTCAAATGCT-TTGTAAGGGGGTGTGAGTTCTAGAGGTTTGAATGAGGGATAGGGG
1 CTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTA-AGGTTTG-ATGAGGGATAGGGG
* * *
2225630 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCTCGGCCCCCC
63 GCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCC-C--CGCCCC
* * * * * * * * *
2225695 CAATTGCTGGAACCCCAATGTCGTCGATCAGGTTCTCTGGTGATGCTCTGATGGTGATGCCCCGG
125 CAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGG
* * * *
2225760 GTG-AAAAAAAATGTGGCAGCAGCACATGCCCGAGCCCAGCATGTGCACCCGAAACCCTCGGTCC
190 GTGAAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCC
* *
2225824 GGTCCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
255 GGTCCGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
2225889 GTCAACCCACGAAACGAGCGCGTGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC---G
320 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGG
* * * * * * * ** *
2225951 --CG-TC----CCCCCCTGCATGCTGCTGATCTTGCTGTCGCAACCCTCGGTCTAGTTAAACCTT
385 ATCGATCGAGTCCCCCCTACGTGCTTC-GATCCTGCTGCCACAACCCTCAGTCTAGTCCAATCTT
*
2226009 AGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCACTACG
449 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* *
2226074 TCGGCCAGAGAGGAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
514 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * **
2226139 TTCATATTTTTGCCATGCAAATGCCATTTTTATGGCTTGTAAATTCATACAACCGTCCCTTAAGC
579 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
2226204 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACATTTTA
644 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
** *
2226269 CGGTTCAAGATTTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
709 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
2226334 CTTGTATTTGTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
774 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
** * * *
2226399 ACCATTCCAAAAAAGTATCCCTATTTCAGACACTTTACTGAG-TACTGGCAGCAAAC
839 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG-GCTACTGGCAGCAAAC
* *
2226455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCGTGAGGTTTGATGAGGGATAGGGTGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TAAGGTTTGATGAGGGATAGGGGGC
* * *
2226520 CAAAATAAGGGCCAAGTACAAGCACCCATCGCACATCATGGGCGCACACCCCCCAC-CCCCCAAT
65 CAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGCCCCCAAT
* * * * * ** * ** ***
2226584 TGCTGGAACCCCAAAGCTGTCGGTCAAGTTCTCTAGCGATGCTCCGGTGATGGTGCCCCGACCGA
129 CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGGTGA
* * *
2226649 AAAAAAATATG-G-CACCAGCACATGCCCGAGCCCAGCATATGCACCCGCAACTCTCGGTCTGGT
194 AAAAAAA-ATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
* *
2226712 CCGACCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
258 CCGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
2226777 AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA-GAGCAGGATGCGCAAACCTG-GGAT
323 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC-GAGGAT
* * ** ** * * * * * *
2226840 CGATCGCGGTACCCCCGTTTGCTGCCCCAAT-CTG-TTCGTAGCAAACCTCGACTTGGTTGTGGT
387 CGATCG-AGT-CCCCCCTACG-TGCTTCGATCCTGCTGC-CA-CAACCCTC-A----G-TCTAGT
*
2226903 CC-ATCTTAGACT-AGAATGAACT-CGTATGCCTAAGCCAACCGAAAAACGAAACGAGCGGGCGG
441 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG----ACGAAACGAGCGGGCGG
* * * * *
2226965 GCCGGCTACTACGCCGGCCAGAGAGGTGGGATGCACAAACCGTGGCATCGATAAGCGTGGTAGGT
502 GCGGGC-ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG-ATCGAT-AGGGTGGTAGGT
* *
2227030 GGGTTTAGGCACATCCT-ATATTT-T-TCATGCCAATGCCATTTTTATGGGCTTTTGTAAATTCA
564 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT-GGC--TTGTAAATTCA
* * *
2227092 TGACCATGGTTCCTTAAGCCTTCATGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCA
626 T-ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
*
2227157 TGATTTTTAAAACTTTTTACGGTT-GGAGATTTTTTT-AAA-TTTTTCAGAAGG-GTTTTGGCCC
690 TGATTTTTGAAACTTTTTACGGTTCGG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* * *
2227218 CAAACTTGGTAGACGTGATCCTTTGCT-TTTTTGGTGGCATGCAC-AAAAAATTCAGCCAAAAGC
754 CAAACTTGGTAGACGTGATCC-TTG-TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
2227281 TCGAAATGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCT
817 TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
2227346 ACTGGCAGCAAAC
882 ACTGGCAGCAAAC
* * * * *
2227359 TTCTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TAAGGTTTGATGAGGGATAGGGGGC
* * * * * *
2227424 CAATATAAGGGCCCAGTACCAGCACCCATCGCACATCATATGCGCCCAATCCCCCTGCCCCCAAT
65 CAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGCCCCCAAT
* * * * * * *
2227489 TGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCC--GAGC
129 CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGGTGA
* *
2227552 AAAAAAAATGC-AGCACCAAGCACATGCTCGGAGCCTTAGGCATGTGCAGACCCGCAAACACCTC
194 AAAAAAAATGCGA-CACC-AGCACATGC-CCGAGCC-CA-GCATGTGC--ACCCGC-AAC-CCTC
* *
2227616 GGT-TGGTCCTGATTCTTGAACACTAGGAATGAACTCCATATGCTTAAGACTGGG-ATGAAACTC
250 GGTCCGGTCC-GA-TCTT--ACACTAGGAATGAACTCCGTATGCTT-AGACTGGGAATG-AACTC
* * * ** *
2227679 CATATGCCTAAGTTAAACCCATGAAACGAGCGTTATGGGCTG-TCAGCTCGGCCAGAGGGGCAAG
309 CGTATGCCTAAG-TCAACCCACGAAACGAGCG-TGCGGGC-GCTCAGC-CGGCCAGAGGGGCAGG
* ** * *
2227743 AGTGCGCAAGCCGAGGAGTCGATCGAGTCCCCCCGTACGTGCTACTG-TCCTATTACCGCAACCC
370 A-TGCGCAAGCCGAGGA-TCGATCGAGTCCCCCC-TACGTGCTTC-GATCCTGCTGCCACAACCC
* * *
2227807 TCGAATCCT-GTCCGATCTTAGACTAAGGAATGAACTCCGTATGCCTAAGCCAACCGAACGAAAC
431 TC-AGT-CTAGTCCAATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCG-ACGAAAC
* *
2227871 GAAGCGGG-GGGC-GGCACTCACGCCGGCCAGAGATGGGCAGGATGCGGTAAGCCGTGGATCGAT
492 G-AGCGGGCGGGCGGGCACT-ACGCCGGCCAGAGA--GGCGGGATGC-GCAAGCCGTGGATCGAT
* * * * *
2227934 ATTGGTGGTTAGG-GGTTTTAGGCACATCTTCAAATTTCTACTATGCCAATGCCATTTTTATGGC
552 A-GGGTGG-TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
* * *
2227998 TTGTAAATTCATACAATGGTCCCTTAACCCTTCATTTGAAGTTTCATGGCAAGATGACTCGTTTT
615 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * *
2228063 CTATTTTTTAAGATTTTTGAAACTTTTTACTGTTCGGGATTTTTTTAAAATTTTTTCAAAAGAAG
680 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAG
** * *
2228128 TTTTTACCCCAAACTTAAG-AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
745 TTTTGGCCCCAAACTT-GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * * *
2228192 CTAAAAAGTCGAAGTGTACAGGATTTTGTGAGCATTTGAAAAAAGTTTCCCTATTTCAAACACTT
809 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
2228257 TAATGGCTACTGGTAGCAAAC
874 TAATGGCTACTGGCAGCAAAC
* *
2228278 CTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTATCAAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AAGGTTTGATGAGGGATAGGGGGC
2228343 CAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCAATC
65 CAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCAATC
* * * * * *
2228408 ACCGGAACCCCAATACCGTAGGCCAGGTTATCTGGTGATGCTCCGACGATGGTGCCCCGGGTGAA
130 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGGTGAA
* * * * * * *
2228473 AAAAAAATGCGACACCAGTACATTCTCGAGCCCAGCATCTGTACCCACAACCCTCGGTCTGGTCC
195 AAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCC
*
2228538 GATCTTACACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
260 GATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
2228603 CACACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGA
325 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGA
* * * *
2228668 TCGAGTCCCCCCTATGTGCTATCGATCCTGCTGCCACAACCCTCAGTCTGGCCCAATCTTAGATT
390 TCGAGTCCCCCCTACGTGCT-TCGATCCTGCTGCCACAACCCTCAGTCTAGTCCAATCTTAGACT
* * *
2228733 GGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCGGGCGGGCGGGCACTACACCGGC
454 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGC
*
2228798 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
519 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
2228863 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
584 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
2228928 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAACTTTTTACGGT
649 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG-AAACTTTTTACGGT
* * *
2228993 TCAGGATTTTTTTAAAATCTTTTT-TGAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCTT
713 TCGGGATTTTTTTAAAAT-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
2229057 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
777 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
*
2229122 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAAC
842 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
2229175 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTA-AGGTTTGATGAGGGATAGGGGGC
* *
2229240 CAATATAAGGGCCAAGTA-TCGGCACCCATCGCACATCATGTGCGCACA-CCCCCGGCCCCCTAA
65 CAATATAAGGGCCAAGTACT-AGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCC-AA
* ** *
2229303 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-AGTGATGGTGCCCCGGG-
128 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGA-CGATGGTGCCCCGGGT
* * **
2229366 CAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAATATGTGCA-CCGCCAACCCTCGGTCCG
192 GAAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCG-CAACCCTCGGTCCG
* * *
2229430 ATCCGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCATATGCCGT-A
256 GTCCGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC-TAA
* * * * * **
2229494 GTCAACCCACGAAACGAGCGTACGCGCACTTAACCGGCCAGAGGGG-TTGATGCGCAAGCCGAGG
320 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGG
* * * * * *
2229558 TTCGATCG-GGCTCCCCCTACATGCTGCGATCCTGCTGTCACAACCCTCAGTCCAGTCCAATCTT
385 ATCGATCGAGTC-CCCCCTACGTGCTTCGATCCTGCTGCCACAACCCTCAGTCTAGTCCAATCTT
* * * *
2229622 AGACTGGGAATGAACTCTGTATGCCTAAGACAACCGACGAAATGAGCGGGCGAGCGGGCACTACG
449 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
*
2229687 TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
514 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
2229752 TTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
579 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
2229817 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTA
644 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* * *
2229881 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCACACTTGGTAGACATGATC
709 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
2229946 CTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACACGATTTTATG
774 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* **
2230011 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTAAAATGGCTACTGGCAGCAAAC
839 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * * *
2230067 CTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTCAT-ATGGGATAAGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AAGGTTTGATGA-GGGATAGGGGG
* *
2230131 CCAATATAAGGGCCAAGTACTAGCACTCATCGGACATCATGTGCGCACACCCCCCCCCGCCACCC
64 CCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACA--CCCCCCCGCC-CCC
* ** * *
2230196 AAATCGTCAAAACCCCAATG-C-T--G-CCGG---TCAGGT--T-CTCCGACGATGGTGCCCCGG
126 -AATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGG
* *
2230250 GTGAAAAAAATATATG-G-CACCAGCACATGCCAGAGCCCAGCATGTGCACCCGTAACCCTCGGT
190 GTGAAAAAAA-A-ATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGT
* ** * * *
2230313 CCAGTTTGATCTTACGCTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
253 CCGGTCCGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** * * * *
2230378 AAGTCAACCCACGGAACGAGCGTGTGGGCATTCAACCGGCCAGAGGGGTAGGATGTGTAAGCCGA
318 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGA
* * ** * **
2230443 GGATCGATCGGGTCCCCCCTACGTGCTGTCGATCCTGCTTCTGCAACCCTCAGTCCAGTCTGATC
383 GGATCGATCGAGTCCCCCCTACGTGCT-TCGATCCTGCTGCCACAACCCTCAGTCTAGTCCAATC
* *
2230508 TTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
447 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
** * * *
2230573 CGATGGTC-GAAGAGGCGGGATGTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
512 CGCCGGCCAG-AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
2230637 ATCTTAATATTTTTGCTATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTA
576 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
2230702 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
641 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * *
2230767 TTACGGTTTGGGATTTTTTTAAAATTATTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTG
706 TTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * * *
2230832 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATTCAGCTAAAATCTCAAAGTTTACTGGATTT
771 ATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
*
2230897 TGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAAC
835 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
2230957 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AAGGTTTGATGAGGGATAGGGGGC
** * * * *
2231022 CAATATAAGGG-CTGGTA-TCAACCCCCATCTCACATCTTGTGCGCACACCCCTCGCC-CCCCCA
65 CAATATAAGGGCCAAGTACT-AGCACCCATCGCACATCATGTGCGCACACCCC-C-CCGCCCCCA
** * * * *
2231084 ATCGTTGGAACCCCAATGCTGTCGGTCAGGTTCTCCAGCGATGCTCC-AGCGATGGTGCCCCGAG
127 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGA-CGATGGTGCCCCGGG
* * * ** * *
2231148 CG-AAAACAAATGCGACACCAGCACATTCTTGAGCCCAGCATCTGCACCTGCAACCCTCGGTCCG
191 TGAAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCG
* **
2231212 GTCTGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGAAAATGAACTCCGTATGCCTAAG
256 GTCCGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
2231277 TCAACCCACGAAACGAGCGTGCGGCCGCTCAGTCGGTCAGAGGGACAGAATGCTG-AAGTCGAGG
321 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC-GCAAGCCGAGG
* * * **
2231341 ATCGGTCAAGTCCGCCC--C-TG---C-A---TGCTGCCACAACCCTC-GATCTAGTCTGATCTT
385 ATCGATCGAGTCCCCCCTACGTGCTTCGATCCTGCTGCCACAACCCTCAG-TCTAGTCCAATCTT
* * * * * *
2231395 AGACTGGGAATGAATTCCATATGCCTAAGCCAACCGATGAAACGAGCGCGCGGGTGGGTACTACG
449 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * *
2231460 TCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGTACATC
514 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*** *
2231525 TTCATATTTCTGATGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTA
579 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
2231587 TGCCAATGCC
Statistics
Matches: 4467, Mismatches: 507, Indels: 319
0.84 0.10 0.06
Matches are distributed among these distances:
884 17 0.00
885 416 0.09
886 169 0.04
887 51 0.01
888 344 0.08
889 167 0.04
890 160 0.04
891 13 0.00
892 278 0.06
893 8 0.00
894 277 0.06
895 51 0.01
896 496 0.11
897 371 0.08
898 14 0.00
899 24 0.01
900 33 0.01
901 47 0.01
902 29 0.01
903 82 0.02
904 272 0.06
905 128 0.03
906 58 0.01
907 107 0.02
908 31 0.01
909 29 0.01
910 6 0.00
911 13 0.00
912 17 0.00
913 12 0.00
914 8 0.00
915 49 0.01
916 141 0.03
917 75 0.02
918 132 0.03
919 251 0.06
920 63 0.01
921 19 0.00
922 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCAATCG
CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGGTGAAA
AAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCG
ATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGAT
CGAGTCCCCCCTACGTGCTTCGATCCTGCTGCCACAACCCTCAGTCTAGTCCAATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCA
GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
Found at i:2229488 original size:26 final size:26
Alignment explanation
Indices: 2229437--2229489 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2229427 CCGATCCGAT
*
2229437 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
* * *
2229463 CTTAGACTGGGAATGAACTTCATATG
1 CTTACACTAGGAATGAACTCCATATG
2229489 C
1 C
2229490 CGTAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:2232113 original size:28 final size:25
Alignment explanation
Indices: 2232077--2232129 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
2232067 TTGGTCCGAT
2232077 CTTACACTGGGACATTGAACTCCGTATG
1 CTTACACT-GGA-A-TGAACTCCGTATG
* *
2232105 CTTAGACTGGAATGAACTCTGTATG
1 CTTACACTGGAATGAACTCCGTATG
2232130 GCCTTACGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 12 0.52
26 1 0.04
27 3 0.13
28 7 0.30
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (25 bp):
CTTACACTGGAATGAACTCCGTATG
Found at i:2233919 original size:26 final size:26
Alignment explanation
Indices: 2233890--2233942 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2233880 CCGGTCCGAT
2233890 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
2233916 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2233942 C
1 C
2233943 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2239943 original size:26 final size:26
Alignment explanation
Indices: 2239907--2239959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2239897 CTGGTCTGAT
*
2239907 CTTAGACTGGGACTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2239933 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2239959 C
1 C
2239960 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2244221 original size:26 final size:26
Alignment explanation
Indices: 2244192--2244244 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2244182 CCGATCTGAT
*
2244192 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
2244218 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
2244244 C
1 C
2244245 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:2244546 original size:898 final size:896
Alignment explanation
Indices: 2240651--2245083 Score: 5620
Period size: 898 Copynumber: 5.0 Consensus size: 896
2240641 CCGGTCCGAT
* * * * * *
2240651 CTTACACTAGGAATAAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCATACGGGTGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
2240716 CGGCCAGAGCGACTGGCTGCACAAGCCGGGGATCGATCGGGTCTCCCCTGCGCGCTGTCGATCCT
66 CGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGATCGGGTCCCCCCTGCGTGCTGTCGATCCT
* * * * * **
2240781 ACTACCACAACCTTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTTTGTATGCCTAAGCCAAC
131 GCTGCCACAACCCTCA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
2240846 CGATGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGCACAAGCCATGGAT
195 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * *
2240911 CGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACCATGCCAATGCCGTTTTTATG
260 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATG
*
2240976 GCTAGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
2241041 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTATCAGAAG
390 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTT-TCAGAAG
* *
2241106 GAGTTTTGGCCCCAAACATGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATT
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC-AAAAAAATT
*
2241171 CAGCTAAACACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
517 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
2241236 TTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATG-TCCTTAAGTGGGTGTGAGTTCTT
582 CTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTT
* *
2241300 GAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
646 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
2241365 GTGCAC-ACCCCCGCCGCCCACCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACG
711 GCGCACAACCCCC-CCGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACG
* * * * *
2241429 ATGCTCCGATGATGGTG-CGCTGG-GCAAAAAAAATGCGGCACCAGCACATGCCCGGGCCCAGCA
775 ATGCTCCGACGATGGTGCCCCAGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** ** * *
2241492 TGTGCACCCGTAACCCTTGGTCCGATCCGATCTTACATTGGGAATGAACTCTGTATG
840 TGTGCACCCACAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATG
* * * * *
2241549 CCTAGACTAGGAAAGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * **
2241614 CGGCCAAAGGGGCAGGATATGCA-AA-TCGGGGATCGACCGGGTCCCCCCTGTGTGCTACCGATC
66 CGGCCAGAGGGGCAGG--ATGCACAAGTCGGGGATCGATCGGGTCCCCCCTGCGTGCTGTCGATC
* ** * ** * *
2241677 ATGCTGCTGCAACCCTCAATCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCAAAGCCA
129 CTGCTGCCACAACCCTC-ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** *
2241742 ACCGACGAAACGAGTGGGCAGGTAGGCACTTCGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGG
193 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* **
2241807 ---G---GGGTGGTAGGTGGGTTTAGG-AAATTCTTCATATTTCTACTGTGCCAATGCCATTTTT
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACA-TCTTCATATTTCTACCATGCCAATGCCATTTTT
*
2241865 ATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* *
2241930 GTTTTCTATTTTTCATGA-TTTTATAAACTTTTTATGGTTC-AGAATTTTTTTAAAATTTTTTCA
387 GTTTTCTATTTTTCACGATTTTTA-AAACTTTTTACGGTTCGAG-ATTTTTTTAAAATTTTTTCA
* * * * *
2241993 GAAAGAGTTTTGGCCCCAAACTTGGTAGAAGTGATTCTTTTAATTTTTTTGGCATGCAAAAAAAA
450 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTTTGGCATGCACAAAAAA
* * * *
2242058 ATTCAGCTAAAAACTCGTAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTGAG
514 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
2242123 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTC
579 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTC
* * ** *
2242188 TCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGTGAAGTACCAACACCCATCGCACATCAT
644 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
2242253 GTGCGCA-AA--------CCCCCCCAATCGCCGAAACCTCAATGTCGTCGGTCAGGTTCTCCAAC
709 GTGCGCACAACCCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGAC
* * * * * * *
2242309 GAAGCTCAGTCGATGGTGCCCCAGGC-AAAAACAAATGTGGCACTAGCAGATGCCCGAGCCCAGC
774 GATGCTCCGACGATGGTGCCCCAGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
2242373 ATGTGCACCCACAACCCTCAGTACGGTCTGATCTTACTCTGGGAATGAACAT-CGTATG
839 ATGTGCACCCACAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAAC-TCCGTATG
* * * *
2242431 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGGGTACAGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
2242496 CGACCAGAGGGGTAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTTGCGTGCTATCGATCA
66 CGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGATCGGGTCCCCCC-TGCGTGCTGTCGATCC
* ** *
2242561 TGCTACCACAACCCTCGATCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCACAACCCTC-ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
2242626 CCGACAAAACGAGCGGGCGGGTGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGTCGT-G-
194 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
*
2242689 --G--AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
* * *
2242750 GACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGAGAAGTTTCATGGTAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * * *
2242815 TTACTATTTTTCACGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAAAATTTTTC---TG
389 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
* * *
2242877 GAGTTTTGGCCCCAAACTTGGTAGATGTGACCCATGTATTTTTGTTGGCATGCACAAAAAAATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTC
* * * *
2242942 AGCTAAAAACTTGAGGCGTACAGGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* **
2243007 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
583 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTG
*
2243072 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGTGTG
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*** ** * * *
2243137 CGCAC-ACCCCTTTGCCCCCCCAATCGCCGGAA-CATAATGCTGCCGATCAGGTCCTCCGACGAT
712 CGCACAACCCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGAT
* * * *
2243200 GCTCCGACGATGGAGCCCCGGGCG-AAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATG
777 GCTCCGACGATGGTGCCCCAGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* ** * * *
2243264 TGCACCCGCAACCCTTGGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATG
842 TGCACCCACAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATG
* * * *
2243319 CTTAGACTGGGAATGAACTCTGTATGCCGT-CGTCAACCCACGAAACGAGCGTACGGGCGCTCAA
1 CTTAGACTAGGAATGAACTCCGTATGCC-TAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
2243383 CCGGCCAGAGGGGTAGGATGCACAAGTCGGGGTTCGGTCGGGTCCCCTCATGCATGCTGCCGATC
65 CCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGATCGGGTCCCC-CCTGCGTGCTGTCGATC
* * *
2243448 CTGCTGCCACAACCTTCAGTCCGGTCTGCTCTTAGA-TGAGGAATGAACTCCGTATGCCTAAGCT
129 CTGCTGCCACAACCCTCA-TCCGGTCTGATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCC
* * * * * *
2243512 AACCGAGGAAACAAGCGGGTGGGCGGGCACTACGTCGGCCATAGAGGCGGGATGCGCAAGCCGTG
192 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTG
* * *
2243577 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCTTGCCAATGCCATTTTT
257 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTT
* *
2243642 ATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAGACGACTC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * * *
2243707 GTTTTCTATTTTTAACGATTTTTTACACTTTTTACGATTCGAGATTTTTTGAAAATTTTTTCAGA
387 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGA
*
2243772 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTCGCATGCACAAAAAAATT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATT
* * * *
2243837 CAGCTAGAAACTCGAAGTGTACAGGATTTTGTGGCCATTTGAAAAAAGCGTCGCCATTTCAGACA
517 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
2243902 CTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTT
582 CTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTT
* *
2243967 GAGGTTTGATGAGGGATA-GGGACCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGT
646 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** * *
2244031 GCGCACAACCCCCCCCGCCCCCCCAATCACCAAAACCCCAATGCCGTCGATCAGGTTCTCTGATG
711 GCGCACAA-CCCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACG
* * * * *
2244096 ATGCTCTGGCAATGGTGCCCCAGGCGAAAAAAAAATGCGGCACCAGCACAAGCCCAAGCCCAGCA
775 ATGCTCCGACGATGGTGCCCCAGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
2244161 TGTGCACCCATAACCCTCAGTCCGATCTGATCTTACACTGGGAATGAACTCCGTATG
840 TGTGCACCCACAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATG
* * * ** *
2244218 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGTGGGCGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
2244283 CGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGTCGGGTCCCCTCTGCATGCTGTGGATCCT
66 CGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGATCGGGTCCCCCCTGCGTGCTGTCGATCCT
* ** ** * *
2244348 ACTGCCGTAACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAACTCCATTTGCCTAAGCCAAC
131 GCTGCCACAACCCTC-ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
2244413 CGATGAATCGAGCGGGCGGCCGGGCACTACGCCAACCAGAGAGGCAGGATGCGCAAGCCGTGGAT
195 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
*
2244478 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCGTGCCAATGCCATTTTTATG
260 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATG
*
2244543 GCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCA--T---G-----T-----GA--A---G-T
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
*
2244587 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGTGATTTTTTTTAAAA-TTTTTCAGAAG
390 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGA-TTTTTTTAAAATTTTTTCAGAAG
* *
2244651 GAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTC
* * *
2244716 AGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACGC
518 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
2244781 TTTAACGCCTACT-GCCAGCAATCCTGTAAAATCTCCAATGCTCTTTAAGGGGTGTGAGTTCTTG
583 TTTAATGGCTACTAG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTG
* *
2244845 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCACACATCATGTG
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * ** *
2244910 CGCACAACCCCCACC-ACCCCCTAATCATCAGAACCCCAATGCCGTCGATCAGGTTCTCC-A--A
712 CGCACAACCCCC-CCGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGA
* * * * *
2244971 ---T-----GATGGTGCCCC-GAG-AAAAAAAAAATACGACACCAGCACATGCTCGAACCCAGCA
776 TGCTCCGACGATGGTGCCCCAG-GCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * ** * * *
2245026 TGTGCACCCGCAACCGTTGGTCTGGTTCGATCTTACACTGGGAATGAACTCCGTATG
840 TGTGCACCCACAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATG
2245083 C
1 C
2245084 CTATGTCAAC
Statistics
Matches: 3088, Mismatches: 388, Indels: 151
0.85 0.11 0.04
Matches are distributed among these distances:
865 83 0.03
866 11 0.00
871 1 0.00
874 1 0.00
876 1 0.00
877 165 0.05
878 185 0.06
879 6 0.00
880 161 0.05
881 136 0.04
882 174 0.06
883 288 0.09
884 7 0.00
887 4 0.00
888 341 0.11
889 20 0.01
890 185 0.06
891 62 0.02
892 167 0.05
893 1 0.00
894 171 0.06
895 50 0.02
896 155 0.05
897 63 0.02
898 460 0.15
899 186 0.06
900 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGATCGGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CAACCCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTC
CGACGATGGTGCCCCAGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
CCCACAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATG
Done.