Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 2 of 93
Found at i:176122 original size:133 final size:133
Alignment explanation
Indices: 175880--176207 Score: 439
Period size: 133 Copynumber: 2.5 Consensus size: 133
175870 AGATTTTGAA
* * * * * * **
175880 ATTTGTAAGACCTCCGGGCATAATTTCGATTTGCAGTGTTATCCCAATCGATTTTTTAT-TTTTG
1 ATTTCTAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTCCTTATCTTTTG
* * *
175944 ACTTACGATGTTACCCGAGTCAATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTTC-GAG
66 ACTTACGATGTTACCCGAGTCAATTCTATAAGACCTCCGGGCATGATTCTATAAGACCTCCAG-G
176008 CATG
130 CATG
176012 ATTTCTAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTCCTTATCTTTTG
1 ATTTCTAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTCCTTATCTTTTG
* * *
176077 ACTTACGATTTTATTCC-AGTCGATTCTATAAGACCTCCGGGCATGATTCTATAAGACCTCCAGG
66 ACTTACGATGTTA-CCCGAGTCAATTCTATAAGACCTCCGGGCATGATTCTATAAGACCTCCAGG
*
176141 TATG
130 CATG
* * *
176145 A-TTCTTAAGACCTTCGAGCTTAATTTTGATTCGTGGTGTTATCCCGATCGATTCCTTATCTTT
1 ATTTC-TAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTCCTTATCTTT
176208 GACATATAAT
Statistics
Matches: 174, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
132 54 0.31
133 117 0.67
134 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.38
Consensus pattern (133 bp):
ATTTCTAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTCCTTATCTTTTG
ACTTACGATGTTACCCGAGTCAATTCTATAAGACCTCCGGGCATGATTCTATAAGACCTCCAGGC
ATG
Found at i:176156 original size:22 final size:23
Alignment explanation
Indices: 176098--176157 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
176088 TATTCCAGTC
*
176098 GATTCTATAAGACCTCCGGGCAT
1 GATTCTATAAGACCTCCAGGCAT
*
176121 GATTCTATAAGACCTCCAGGTAT
1 GATTCTATAAGACCTCCAGGCAT
176144 GATTCT-TAAGACCT
1 GATTCTATAAGACCT
176158 TCGAGCTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
22 8 0.23
23 27 0.77
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (23 bp):
GATTCTATAAGACCTCCAGGCAT
Found at i:176271 original size:87 final size:84
Alignment explanation
Indices: 176150--176370 Score: 264
Period size: 87 Copynumber: 2.6 Consensus size: 84
176140 GTATGATTCT
* ** *
176150 TAAGACCTTCGAGCTTAATTTTGATTCGTGGTGTTATCCCGATCGATTCCTTATCTTTGACATAT
1 TAAGACCTTCGA-CATAATTTTGATTCACGGTGTTATCCCGATCGATTCCTTATCTTTGAC-TAC
*
176215 AATGTTATCCTAGT-TGATTTTG
64 AATGTTATCCCAGTCT-A-TTTG
* * * *
176237 TAAGACCTTCAGACATAATTTCGATTCACGGTGTTATCCCGATCGATTCTTTATCTTTGACTGCG
1 TAAGACCTTC-GACATAATTTTGATTCACGGTGTTATCCCGATCGATTCCTTATCTTTGACTACA
176302 ATGTTATCCCAGTCTATTTG
65 ATGTTATCCCAGTCTATTTG
* * *
176322 TAAGACTTTCGGGCATAATTTTGATTCACGTGTGTTATCTCGATCGATT
1 TAAGACCTTC-GACATAATTTTGATTCACG-GTGTTATCCCGATCGATT
176371 TATTATTTTT
Statistics
Matches: 117, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
85 30 0.26
86 31 0.26
87 54 0.46
88 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (84 bp):
TAAGACCTTCGACATAATTTTGATTCACGGTGTTATCCCGATCGATTCCTTATCTTTGACTACAA
TGTTATCCCAGTCTATTTG
Found at i:176588 original size:12 final size:13
Alignment explanation
Indices: 176565--176595 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
176555 CGAAATACAA
176565 AAAAAATAAATAC
1 AAAAAATAAATAC
176578 AAAAAAT-AATAC
1 AAAAAATAAATAC
176590 AAAAAA
1 AAAAAA
176596 ATAACAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (13 bp):
AAAAAATAAATAC
Found at i:176596 original size:13 final size:13
Alignment explanation
Indices: 176558--176599 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
176548 TATTATACGA
176558 AATACAAAAAAAAT
1 AATAC-AAAAAAAT
176572 AAATAC-AAAAAAT
1 -AATACAAAAAAAT
176585 AATACAAAAAAAT
1 AATACAAAAAAAT
176598 AA
1 AA
176600 CAGAAAAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.19
13 16 0.62
15 5 0.19
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (13 bp):
AATACAAAAAAAT
Found at i:177974 original size:18 final size:16
Alignment explanation
Indices: 177947--178000 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
177937 CTAAGTTTTT
177947 AAAACCCCTAAAAATCC
1 AAAACCCCT-AAAATCC
*
177964 AAAATCCCCTAAAATTC
1 AAAA-CCCCTAAAATCC
*
177981 AAAACCTCTTAAAATCC
1 AAAACC-CCTAAAATCC
177998 AAA
1 AAA
178001 GTCGTAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 2 0.06
17 25 0.78
18 5 0.16
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAACCCCTAAAATCC
Found at i:182255 original size:26 final size:26
Alignment explanation
Indices: 182219--182271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
182209 GTTGACTTAG
*
182219 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
* *
182245 GCATACAGAGTTCATTGCTAGTGTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
182271 G
1 G
182272 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:184041 original size:26 final size:26
Alignment explanation
Indices: 183989--184041 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
183979 GTTGACTTAG
* *
183989 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
184015 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
184041 G
1 G
184042 ATCGGGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:186398 original size:896 final size:895
Alignment explanation
Indices: 180840--190163 Score: 12130
Period size: 894 Copynumber: 10.4 Consensus size: 895
180830 ATTTTACAGG
* * * * * * *
180840 TTTGAGCATGCCAACAAAAACACAAGCATCACGTCTACCAAGATTGGGGCCAAAACACCTTCTAA
1 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * ** *
180905 AAAAATTTAAAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
66 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* **
180970 ATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAACTA
131 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
181035 TGGTATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
196 TGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
181100 CTTGCACTTCCCGCCTCTAT-GACAGGCGCAGTGCCCGCCCGTCCACTCGTTTCGTCGGTTGGCT
261 CTTGCGCATCCCGCCTCTCTGGTC-GGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * * *
181164 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAACC-GAACCAAGGGTTGCGGCAACAGGA-C
325 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGTGGCAGCAGGATC
** * ** ** *
181227 TGGCAGCATGCAGGGGGGACCCGA-CTAATCCCCAACTTGTGCATCCTGCCCTTCTGGCCGGCTG
389 -GGCAGCACACAGGGGGGACCCGATC-GATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTG
** * *
181291 AGCGCCCATACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
452 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *
181356 TGGAGTTCATTCCCTGTGTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGA
517 CGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGA
* ** * * *
181421 GCATGTGCAGGTGCTGCATTTTCTTTCGCCCGGGGCACCATCGCCAGAGCATCGC-CGGAGAACC
582 GCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGG-ACCATCACCGGAGCATCGCTCGGAGAACC
* * ** *
181485 TGACCGACGGCATTGAGGTTCCGGTGATT-AGGGGCGGGGGGTGTGCGCACATGATGTGCGATGG
646 TGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGG
*
181549 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
711 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
181614 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
776 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
181679 ACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
841 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
181734 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAGTCTTTCTGA
1 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
*
181799 AAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
66 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
** *
181864 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAAGATTGCATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
181929 TGGCATTGGGATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGG
196 TGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** * ** * * ** *
181994 CTTGCTTATCCCGCCTCTCTAGTCGATGTAGTGCCCACCTGCCCATTCATTTCGTCGGTTGGCTT
261 CTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
182059 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGTGACAGCAAGAGCAG
326 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
** * * * * * * *
182124 CAGCACGGAGGGGGGA-CCTAGCCGATCCTCGGCTT-GGACATCTTGCCCTTCTGGTCGGCTGAG
391 CAGCACACAGGGGGGACCCGA-TCGATCCCCGGCTTACG-CATCCTGCCCCTCTGGCCGGCTGAG
* * * *
182187 CGCCCGCACGATCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACA
454 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * ** * *
182252 GAGTTCATTGCTAGTGTAAGATCGAACCAGACCGAGGGTTACGGGTGCACATGCTAGGC-CCAGG
519 GAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGA-G
*
182316 CATGTGCTGGTGCCACATTTGTTTTT-GCCTGGGG-----CA-C----CATCG-TCGGAGAACCT
583 CATGTGCTGGTGCCACATTT-TTTTTCGCCCGGGGACCATCACCGGAGCATCGCTCGGAGAACCT
* * *
182369 GATCGGCGGCATTGGGGTTCCGACGATTGGAGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
647 GACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
182434 TGCCGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCAAGAACTCACACCCCCT
712 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
182499 TAAAGAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
777 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
182564 CTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
842 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
182618 TTTGTGCATGCCAAAAAAAATACAAGCATCACGTCTACCAAGTTTTGGGGCCAAAAATCCTTTTG
1 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG-TTTGGGGCCAAAACTCCTTCTG
* * *
182683 AAAAAA-TTTAAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
65 AAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
182747 CGTCTTGCCATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
130 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
182812 ATGGCATTGGCATGGTAGAAATATGAAGATATGCCAAAACCCACCTACCACCCTATCGATCCACG
195 ATGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
182877 GCTTGCACATCCCGCCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCTCGTTTTGTCGATTGGCT
260 GCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
182942 TAGGCATACGGAGTTCATTCCCAGTCT-AG---GG-TCAGACCGAGGGTTGCGGTAGCAGGATCG
325 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * ** * *
183002 GTAGCACGCAAGGGGAGACCCGACCAATCCCCGGCTTGTGCATCCTGCCCCTCTGGACGGTTGAG
390 GCAGCACAC-AGGGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAG
* ** *
183067 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACCAAGTTCATTCCCAGTCTAAGCAAACG
454 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
183132 GAGTTCATTCCCAGTGTAAGATTGGACCAGACTGAGGGTTGCGGGGGCACATGCTGGGCTCGAGC
519 GAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGC
** * * * **
183197 ATGTGCTGGTGCCGTA-TTTTTTTCACCCAGGGCACCGTCTTCGGAGCATCG-TCGGAGAACCTG
584 ATGTGCTGGTGCCACATTTTTTTTCGCCC-GGGGACCATCACCGGAGCATCGCTCGGAGAACCTG
* * * * * *
183260 ACCAGTGGCATTGGGGTTCCGACGATTGGGGGGTGGGGAGTGTGCACACATGATGTGCGACGGGT
648 ACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
183325 GCCGGTACTTGGCCCTTATATTGG-CCCTTATCCCTTATCAAACCTCAAGAACTCACACCCCCTT
713 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
183389 AAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGCCTGAAATGGGGACAC
778 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
183454 TTTTTTCAAGTGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
843 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
*
183507 TTTGTGCATGCCAACAAAAATACCAGGATCATGTCTACCAAGTTTGGGGCCAAAACT-C--CTGA
1 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * *
183569 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTC
66 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
183634 ATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
183699 TTGCATTGGCATGGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
196 TGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
183764 CTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGACCGCCCGTCCGCTCGTTTCATCGGTTGGCTT
261 CTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * ** * *
183829 CGGCATA-GAGAGTTTATTCCCAGACTAAGATCGGACCAAACCGAGGGTTGTGATAGTAGGATCA
326 AGGCATACG-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * * *
183893 GCAACACACAGGGGGGGACCCGATCGATCCTCGGCTTGCACATCCTG-CCCTTTAGCCGGTTGAG
390 GCAGCACACA-GGGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAG
* * ** ** * *
183957 CACCCGTACGCTTATTTCGCAGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAAGCATACG
454 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
184022 GAGTTCATTCCCAGTGTAAGATCGGGCCAGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGC
519 GAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGC
* * ** * *
184087 ATGTGCTGCTGCCACA-TTTTTTTCCCCCGGGGCACCATCGTCAGATCATCGCT-GGAGAAACCT
584 ATGTGCTGGTGCCACATTTTTTTTCGCCCGGGG-ACCATCACCGGAGCATCGCTCGGAG-AACCT
*
184150 GACCGACGGCATTGGGGTTCC-ACCGATT-GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGG
647 GACCGGCGGCATTGGGGTTCCGA-CGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
184213 GTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCTCC
711 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
184278 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGAC
776 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
184343 ACTTTTTTCAAATGGTCACAAATTCCTGTAAACTTTGAGTTTTTAGCTGAATTTT
841 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
184398 TTTGTGCACGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGA
1 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * *
184463 AAAAATTTAAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
66 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
184528 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGATTTTGCAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
184593 TGGCATTGGTGATGGTAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCTATCCACG
196 TGGCATTGG-CATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** * ** *
184658 GCTTGCTTATCCCGCCTCTCTAGTCGATGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
260 GCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
184723 TAGGCATACCGAGTTCATTCCCAATCTAAGATTGGATCAGACCAAGGGTTGTGGCAGCAGGATCA
325 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * *
184788 GCAACACGCAGGAGGGGACCC-AGTCGATCCCTGGCTT-GGACATCCTGCCCCTCTGGTCAGCTG
390 GCAGCACACAGG-GGGGACCCGA-TCGATCCCCGGCTTACG-CATCCTGCCCCTCTGGCCGGCTG
* * * **
184851 AGCTCCCGCACGCTCGTTTCGTGTGTTGACTTAGGGATATAGAGTTCATTCCCAGTCTAAGCATA
452 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * * *
184916 CGGAGTTCATTGCTAGTGTAAGATCAGATCGGACCGAGGGTTGTGGGTGCACATGCTAGGCTTGG
517 CGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGA
* * * *
184981 GCATTTGTTGGTGCCACATTTGTTTTTTCGCCCGAGGCG-CCATTACCGGAGCATCG-TCAGAGA
582 GCATGTGCTGGTGCCACA-TT-TTTTTTCGCCCG-GG-GACCATCACCGGAGCATCGCTCGGAGA
* * * * * * *
185044 ACTTGATCGGTGGCATTGGGGTTTCAACGATTGGGGGGCAGAGGGGTGTGTGCACATGATGTGCG
643 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGC-GGGGGGTGTGCGCACATGATGTGCG
* *
185109 ATGGGT-ATCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACA
707 ATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
185173 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAAT
771 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAAT
* *
185237 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAAACTTTGAGTTTTTAGCTGAATTTT
835 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
*
185298 TTTGTGCATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
1 TTTGTGCATGCC-AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* *
185363 AAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAGTAGAAAACGAGT
65 AAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * * *
185428 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGCATGATTTTGCAAGCCATAAAA
130 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
185493 ATGGCATTGGGATGGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCTACG
195 ATGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
185558 GCTTGCGCATCCCACCTCTCTGGTAGACGTAGT-CGCCACCCGCCCGCTCGTTCCGTCAGTTGGC
260 GCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGC-CCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * * * *
185622 TTTGGCATATGGAGTTCATTCCCTGTCTAAGATCAGATCAAACCAAGGGTTGTGGGAGCAGGATT
324 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATC
* * * * **
185687 GGTAGCACATAGGGGGGACCC-ATTCGATCCCCTGCTTACGCATCCTGTCCCTCTGGCCAACTGA
389 GGCAGCACACAGGGGGGACCCGA-TCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGA
* * *
185751 GCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAC
453 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
185816 -GATGTTCATTCCTAGTGTAAGATCGGACCGGACCAAGGGTTGTGGGTGCACATGCTGGGCTCGG
518 GGA-GTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGA
* *
185880 GCATGTGCTGGCG-CAGCATTTGTTTTTCGCCTTGGGGACCATCACCGGAGCATCGCT-GGAGAA
582 GCATGTGCTGGTGCCA-CATTT-TTTTTCGCC-CGGGGACCATCACCGGAGCATCGCTCGGAGAA
* * * * *
185943 CCTGACCGGTGGCTTTGGGGTTCCGATGATTGGGGGGCGGGGGGGTGTGCGTACATGATGTGTGA
644 CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGA
* ** *
186008 TAGGTGCTGGTACTT-GCCCTTATATTGGCCCATTATCCCTCATCAAACCTCGAGAGCTCACACC
708 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
186072 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGG
773 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
186137 GACACTTTTTTCAAATGGTCACAAAATCCCGTACACTTCGATTTTTTAGTTGAAATTT
838 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
186195 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCTTTTGA
1 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* ** * *
186260 AAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTTGAAAATTATGAAAAAGAGAAAACGAGTC
66 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
186325 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
186390 TTGCATTGGCATGGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
196 TGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
186455 CTTGCGCATCCCTCCTCTTTGGCCGACGTAGTGCCCACCCGCCCGCTCGTTTCATCGGTTGCCTT
261 CTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
186520 AAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGAAGCAGGATCGG
326 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * *
186585 TAGCACGCAGGGGGGGACCCGATCGATCCTCGACTTACGCATCCTGCCCCTCTGGCCGACTGAGC
391 CAGCACACA-GGGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGC
* * * *
186650 GCCCGTACGCTCGTTTCGTGAGTTGACTTACGCATACGGAGTTTATTCCCAGTC-AAGCATACGG
455 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
186714 AGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCT
520 AGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCA
* * * * **
186779 TGTGCTGGTGTCGCA-TTTTTTTCGCCCAGGGCACCGTCGTCGGAGCATCGCT-GGAGAACCTGA
585 TGTGCTGGTGCCACATTTTTTTTCGCCC-GGGGACCATCACCGGAGCATCGCTCGGAGAACCTGA
** * * * ** *
186842 TTGGCGGCATTGGGGTTTCGATGATTGGGGGGCGGGGGGTTTGCGCACATGATGTGTTATGGGTA
649 CCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
186907 CGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTGA
714 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
186972 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACT
779 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
187037 TTTTTCATATGGTCACAAAATCCTGTACACTTTGAGTTTTTGGCTGAAATTT
844 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
*
187089 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
1 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* *
187154 AAAAATTTTAAAAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
66 AAAAATTTT-AAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
187219 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAGA
130 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
187284 ATGGCATTGGCTTGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
195 ATGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * *
187349 GCTTGCGCATCCCACCTCTCTGG-CTGGCGTAATG--C-CCCGTCCGCTCATTTCATCAGTTCGC
260 GCTTGCGCATCCCGCCTCTCTGGTC-GGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** * * ** *
187410 TTAGGCATATGGAGTTTGTTCCTAGTCTAAGATCGGATCAGAGTGAGGGTTG-AGCAGCAGGATC
324 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATC
* ** * * * * * *
187474 AGCAGCATGCAAGGTGGACCCGATCGATCCTCGACTTACGAATCCTGCCCCTCTGGCCGGTTGAG
389 GGCAGCACACAGGGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAG
* *
187539 CG-CCGGACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACG
454 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * ** *
187603 AAGTTAATTCCCAGTGTAAGATCAGACTGGACCGAGAGTTGCAGGTGTACATGCTGGGCTCGAGC
519 GAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGC
* * * * * *
187668 ATGTGCTGGTGCCATATTTTTCTTTCGCCTGGGGCACCATCTCCAGAGCATC-ATCGAAGAACCT
584 ATGTGCTGGTGCCACATTTTT-TTTCGCCCGGGG-ACCATCACCGGAGCATCGCTCGGAGAACCT
* * * * * * *
187732 GACCGGCGACATTAGGGTTCCAACGATTGGGGGGAAGGGTGGTGTGTGCACATGATGTGCGCTGG
647 GACCGGCGGCATTGGGGTTCCGACGATTGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGG
* * * * *
187797 GTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCTCTCATTAAACCTCAAGAACTCAAACCCCC
711 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* **
187862 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGAAGAC
776 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*** ** * * **
187927 ACTTTTTTCAAATGGTCACCCTAT-CAATCCACTTCGAGTTTTTAGTTGAATTGC
841 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
187981 TTT-TGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
1 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* ** *
188045 AACAATTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
66 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
188110 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
188175 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG
196 TGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * ** * *
188240 CTTGCGCATCCCGCCTCCCTAGCCGACGTAATGCCCGCCCG-CCAATCGTTTCCTCGATTGGCTT
261 CTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * ** * *
188304 AGGCATACGGAGTTCATTCTCAGTCTAAGATTGGACCAGATTGAGGGTTGCGGCAATAGGATTGA
326 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * * *
188369 CAACTCATAGGGGGGACCCGATCGATCCCCGGCATACGCATCCTACCCCTCTGGCCAGCTGAGCA
391 CAGCACACAGGGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * *
188434 CCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
456 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
188499 GTTCATTCCCAGTGTAAGATCGGACTGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCAT
521 GTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCAT
*
188564 GTGCTGGTGCCACATTTTTTTTTCGCTCGGGGCACCATCACCGGAGCATCG-TCGGAGAACCTGA
586 GTGCTGGTGCCACA-TTTTTTTTCGCCCGGGG-ACCATCACCGGAGCATCGCTCGGAGAACCTGA
* *
188628 CCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGTGGGGGTGTGCGCACATGATGTGTGATGG
649 CCGGCGGCATTGGGGTTCCGACGATT-GGGGGGC-G-GGGGGTGTGCGCACATGATGTGCGATGG
* * *
188693 GTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACTCCCCC
711 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
188758 TTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAAT-GGGAC
776 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*** * * *
188822 ACTTTTTTCAAATGGTCACCTTAT-C-GATCCACTTCAAGTTTTTAGTTGAATTTT
841 ACTTTTTTCAAATGGTCACAAAATCCTG-TACACTTCGAGTTTTTAGCTGAATTTT
* * *
188876 TTTATGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
1 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* ** * *
188941 AAAAATTTTCAAAAAATCCCGAACCGT-AAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTC
66 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
189005 GTCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
189070 TGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACTCACCTACTACCCTATCGATCCACAG
196 TGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** * *
189135 CTTATGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCCCTCGTTTCGTCGGTTGGCTT
261 CTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * ** * *
189200 AGGCATACGGAATTCATTCCCAGCCTAAGATCAGACCGGACTGAGTGTTGCAGCAGCAGGATTGA
326 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * ** * * *
189265 TAGCACATAGGGGGGGACCCGATCGATCCCCGGCTTGTGCATTCTGCCCCTCTGGCCGACTAAGC
391 CAGCACACA-GGGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGC
* *
189330 TCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
455 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
189395 AGTTCATTCCTAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTAGGCTCAAGCA
520 AGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCA
* *
189460 TGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGCACCATCACCGGAGCATCGCT-GGAGAACCTGA
585 TGTGCTGGTGCCACATTTTTTTTCGCCCG-GGGACCATCACCGGAGCATCGCTCGGAGAACCTGA
* * * ** * ** *
189524 CTGACGGTATTCAGGTTTCGGTGATT-------GGGGGGTGTGCGCACATGAAGTGCGATGGGTG
649 CCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
189582 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
714 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
189647 AAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTAG-CATTAAAGTGTCTGAAATGGGGACACT
779 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
189711 TTTTTCAAATAGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTAAATTTT
844 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
189763 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCAACCAAGTTTGGGTCCAAAACTCCTTCTGA
1 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * ** *
189828 AAAAATTTT-AAAAAATCTCGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGCC
66 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
189892 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
189957 TGGCATTGGCATAGTAGAAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCAATACACG
196 TGGCATTGGCATGGTA-AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
190022 GCTTGCACATCCCGCCTCTCTGG-CTGGCATAGTGCCCGCCCGCCCGCTCATTTCATCGTTTGGC
260 GCTTGCGCATCCCGCCTCTCTGGTC-GGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * ** *
190086 TTAGGCATACGGAGTTCATTCCCAGTCTACGATTGGATCGGATCGAGGGTTACGGCAGTAGGATC
324 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATC
*
190151 GGTAGCACACAGG
389 GGCAGCACACAGG
190164 TGTCACGAGC
Statistics
Matches: 7420, Mismatches: 901, Indels: 225
0.87 0.11 0.03
Matches are distributed among these distances:
878 5 0.00
879 33 0.00
880 169 0.02
881 6 0.00
883 40 0.01
884 500 0.07
885 53 0.01
886 420 0.06
887 209 0.03
888 171 0.02
889 236 0.03
890 653 0.09
891 380 0.05
892 203 0.03
893 264 0.04
894 1134 0.15
895 663 0.09
896 919 0.12
897 455 0.06
898 133 0.02
899 206 0.03
900 381 0.05
901 187 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
CAGCACACAGGGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCAT
GTGCTGGTGCCACATTTTTTTTCGCCCGGGGACCATCACCGGAGCATCGCTCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
Found at i:187607 original size:26 final size:26
Alignment explanation
Indices: 187570--187622 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
187560 GTTGACTTAG
* *
187570 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTAACTCCCAGTCTAA
* *
187596 GCATACGAAGTTAATTCCCAGTGTAA
1 GCATACGAAGTTAACTCCCAGTCTAA
187622 G
1 G
187623 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTAACTCCCAGTCTAA
Found at i:188493 original size:26 final size:26
Alignment explanation
Indices: 188464--188516 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
188454 GTTGACTTAG
*
188464 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
188490 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
188516 G
1 G
188517 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:189397 original size:26 final size:26
Alignment explanation
Indices: 189361--189413 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
189351 GTTGACTTAG
189361 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
189387 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
189413 G
1 G
189414 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:190893 original size:26 final size:26
Alignment explanation
Indices: 190856--190908 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
190846 GGTTGACTTG
* *
190856 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTGTAA
190882 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTGTAA
190908 G
1 G
190909 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTGTAA
Found at i:192359 original size:283 final size:283
Alignment explanation
Indices: 191679--192484 Score: 1052
Period size: 285 Copynumber: 2.8 Consensus size: 283
191669 GAAGGGACTT
* * * *
191679 GATCGATCCCCGGCTTACACATCCTGCCCCTCTGGCCTG-TTGAACGCACGCACGCTCGTTTCGT
1 GATCGATCCCCGGCTTACACATCCTGCCCCTCTGGCC-GACTGAGCACCCGCACGCTCGTTTCGT
* *
191743 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATG-CGGAGTTCATTCCCAGTGAAA
65 GGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGTA-GACGGAGTTCATTCCCAGTGTAA
* * * *
191807 GATCGGACCAGACCGAGGGTTGCAGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCATATTT
129 GATCGGACCGGACCGAGGGTT-CCGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTT
* *
191872 TTTTT-CGTCTGGGGCACCATCGTCGGAGCATCGTCGG-GGACCTTGACCGACGGCATTGTGGCA
193 TTTTTGC-TC-GGAGCACCATCGTCGGAGCATCGTCGGAGAACC-TGACCGACGGCATTGTGGCA
191935 GCAGGATCGACAGCACGCAGGGTGGACCC
255 GCAGGATCGACAGCACGCAGGGTGGACCC
* ** * *
191964 GATCGATCCCCGGCTTGCACATCCTGCCCCTCTGGTTGACTCAGCACCCGTACGCTCGTTTCGTG
1 GATCGATCCCCGGCTTACACATCCTGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTG
* * *
192029 GGTTGACTTAGGCATAAAGAGTTCATTCCCAGTCTACGTATACGGAGTTCATTCCCAGTGTAAGA
66 GGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGTAGACGGAGTTCATTCCCAGTGTAAGA
* *
192094 TCAGACCGGACCGAGGGTTACCGGTGCACATGCTGGGCACGGGCATGTGCTGGTGCCATATTTTT
131 TCGGACCGGACCGAGGGTT-CCGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTT
* * **
192159 TTTGCTCGGAGCACCATCGTCGAAGCATCATCGGAGAACCTGACCGGTGGCATTGTGGCAGCAGG
195 TTTGCTCGGAGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGTGGCAGCAGG
*
192224 ATC-AGCAGCATGCAGGG-GGACCC
260 ATCGA-CAGCACGCAGGGTGGACCC
* * * * * *
192247 GATCGATCCCCAGCTTTCGCATCCTGCCCCTCTGGCCGACTGAGCACCCGCATGCTCGTTTCATT
1 GATCGATCCCCGGCTTACACATCCTGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTG
* * *
192312 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCAGACGGAGTTCATTTCCAGTGTAAGA
66 GGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGTAGACGGAGTTCATTCCCAGTGTAAGA
* * * * * ***
192377 TTGGATCGGACCAAGGGTTGCGAGTGCACATGCTGGGCTCGGGCATGTGCTTGTGCTGCA-TTTT
131 TCGGACCGGACCGAGGGTTCCG-GTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTT
**
192441 TTTGC-CCAAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
195 TTTGCTCGGA-GCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
192485 TGGCTGCATT
Statistics
Matches: 456, Mismatches: 58, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
281 2 0.00
282 43 0.09
283 168 0.37
284 62 0.14
285 180 0.39
286 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (283 bp):
GATCGATCCCCGGCTTACACATCCTGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGTAGACGGAGTTCATTCCCAGTGTAAGA
TCGGACCGGACCGAGGGTTCCGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTT
TTGCTCGGAGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGTGGCAGCAGGA
TCGACAGCACGCAGGGTGGACCC
Found at i:194602 original size:900 final size:894
Alignment explanation
Indices: 192215--194899 Score: 3659
Period size: 900 Copynumber: 3.0 Consensus size: 894
192205 GTGGCATTGT
* * *
192215 GGCAGCAGGATCAGCAGCATGCA--GGGGGACCCGATCGATCCCC-AGCTTTCGCATCCTGCCCC
1 GGCAGCAGGATCAGCAGCACGTAGGGGGGGACCCGATCGATCCCCGA-CTTCCGCATCCTGCCCC
* * * * * *
192277 TCTGGCCGACTGAGCACCCGCATGCTCGTTTCATTGGTTGACTTAGGCATATGGAGTTCATTCCC
65 TCTGGCCG-GTGAGCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * *
192342 AGTCTAAGCAGACGGAGTTCATT-TCCAGTGTAAGAT-TGGATCGGACCAAGGGTTGCGAGTGCA
129 AGTCTAAGCATACGGAGTTCATTCT-CAGTGTAAGATCAGAAT-GGACCGAGGGTTGAG-GTGCA
* * *
192405 CATGCTGGGCTCGGGCATGTGCTTGTGCTGCA-TTTTTTT-GCCCAAGGCACCATCGTCGGAGCA
191 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCAGGGCACCATCGTCGGAGCA
* * ** *
192468 TCGTCGGAGAACCTGACTGGCT-GCATTGGGGTTAAGGTGATTGGGGGGGCTGGGGGGTGTGCGC
256 TCGCCGGAGAACCTGACCGG-TGGCATTGGGGTTCCGGCGATTGGGGGGGC-GGGGGGTGTGCGC
*
192532 ACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTC
319 ACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
192597 AAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
384 AAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
192662 TGTCTGAAATGGGGACATTTTTTTCAAATGGTCAAAAAAATCCTGTACACTTTGAGTTTTTAGCT
448 TGTCTGAAATGGGGACACTTTTTTCAAATGGTC-ACAAAATCCTGTACACTTTGAGTTTTTAGCT
* * * * **
192727 AAATGTTTTTGTGCATGCCAGCAAAAATACAAGGATCACATCTATGAAGTGTGGGGCCAAAACTC
512 GAATTTTTTTGTGCATGCCA-AAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTC
* * *
192792 CTTCTGAAAAAATTTTAAAAATATCCTGAACCGTAAAAAGTTTCAAAAATTATGAAGAATAGAAA
576 CTTCTGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATTATGAAAAATAGAAA
* * * *
192857 ATGAGTCGTCTTGCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGGATTAACAAGCC
641 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
192922 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAA
706 ATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * **
192987 TCCACGGCTTGCGTATCCCGTCTCTCTGGTCGGCGGTAGTGCCCAGCCTCGCTTGGCTCG-TTCG
771 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGC-GTAGTGCCC-GCC-AGC-CCGCTCGTTTCG
* * * *** * *
193051 TCGGTTGGCTTATGGCATCTGGAGGTTCATTTCCTATCTAAGATTGGATTGGGATCGAGGGTTGC
832 TCGGTCGGCTTA-GGCATATGGA-GTTCA-TTCCCATCTAAGATCAAACTGGGATCGAGGGGTGC
193116 A
894 A
* * * ** * ** * * *
193117 GTTAGTAGGATTGGGTTGGCA-CACAGTTGGGCGTTGACCCGATTGATCCCTGGCTTACCGCATC
1 G---GCAGCA--GGATCAGCAGCAC-GTAGGG-GGGGACCCGATCGATCCCCGACTT-CCGCATC
*
193181 CTGCCCCTGCTGGCCGGCTGAGCGCCCGCACGCCTCGTTTCGTGGGTTGCACCTTAGGCATACAG
58 CTGCCCCT-CTGGCCGG-TGAGCGCCCGCACG-CTCGTTTCGTCGGTTG-A-CTTAGGCATAC-G
* * * * * **
193246 GAGTTCATTCCCAGTCTAAGCATTCGAAGTTCATATTCCCAGTGTCAGATCGGACCGGACCGAGG
117 GAGTTCATTCCCAGTCTAAGCATACGGAGTTC--ATTCTCAGTGTAAGATCAGAATGGACCGAGG
* * * * *
193311 GTTTCAGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTATTTTTCGCCCGGGGCAAC
180 G-TTGAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCAGGGCACC
* ** *
193376 ATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGG
244 ATCGTCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATTGGGGGGGCGGG
* * * * *
193441 GCGTGTGCACACATGATGTGCGATGGCTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTC
309 GGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
193506 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
374 ATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
193571 GCCAGTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAG
438 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAG
* *
193636 TTTTTAGCTGAATTTTTTTGTGCCTACCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGG
503 TTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTGTGGGG
* *
193701 CCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATTGTGAA
567 CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATTATGAA
* *
193766 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGGAGGCTTAAGGGACCGTTGTATGAAT
632 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
*
193831 TTACAAGCCATAAAAATGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCA
697 TTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
193896 CCCTATCGATCCACGGCTTGCGCATCTCGCCTCTTTGGCCGGCGTAGTGCCCGCCAGCCCGCTCG
762 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCTCG
* *
193961 TTTCGTCAGTCGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACT-GGATTGAGGGG
827 TTTCGTCGGTCGGCTTAGGCATATGGAGTTCATTCCCA-TCTAAGATCAAACTGGGATCGAGGGG
194025 TGC-
891 TGCA
* *
194028 GGCAGCAGGATCAGCAGCACGTAGGGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCT
1 GGCAGCAGGATCAGCAGCACGTAGGGGGGGACCCGATCGATCCCCGACTTCCGCATCCTGCCCCT
*
194093 CAGGCCGGTGGAGCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCA
66 CTGGCCGGT-GAGCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
194158 GTCTAAGCATACGGAGTTCATTCTCAGTGTAAAATCAAAATGGATCGAGGGTTGAAGGTGCACAT
130 GTCTAAGCATACGGAGTTCATTCTCAGTGTAAGATCAGAATGGACCGAGGGTTG-AGGTGCACAT
* * * ** *
194223 GCTGGGCTAGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCAGGGCACCTTCCCCGGAGCATTG
194 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCAGGGCACCATCGTCGGAGCATCG
*
194288 CCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCAATTGGGGGGAGCAGGGGGGGTGTGCGCAC
259 CCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATTGGGGGG-GC--GGGGGGTGTGCGCAC
* * * **
194353 ATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATGTTGGACCCCTATCCCTCAACAAACCTTGA
321 ATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
194418 GAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
386 GAACTCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
194483 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGATTTTTTAGCTGAA
450 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAA
* *
194548 TTTTTTTGTGCATGCCAAAAAAACTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
515 TTTTTTTGTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTT
* *
194613 CTGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
579 CTGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATTATGAAAAATAGAAAACG
*
194678 AGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
644 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
194743 AAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCC
709 AAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
194808 ACGGTTTGCACATCCCGCCTCTCTGGCCGGCGTAGTACCTGCCCA-CCCGTTCATTTCGTCGGTC
774 ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCAGCCCGCTCGTTTCGTCGGTC
* *
194872 GGATTAGGCATACGGAGTTCATTCCCAT
838 GGCTTAGGCATATGGAGTTCATTCCCAT
194900 TCGAAGCATA
Statistics
Matches: 1565, Mismatches: 180, Indels: 79
0.86 0.10 0.04
Matches are distributed among these distances:
896 2 0.00
897 129 0.08
898 2 0.00
899 39 0.02
900 520 0.33
901 4 0.00
902 17 0.01
903 20 0.01
904 14 0.01
905 22 0.01
906 13 0.01
907 10 0.01
908 4 0.00
909 1 0.00
910 18 0.01
911 15 0.01
912 36 0.02
913 29 0.02
914 15 0.01
915 26 0.02
916 33 0.02
917 9 0.01
918 350 0.22
919 173 0.11
920 64 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
GGCAGCAGGATCAGCAGCACGTAGGGGGGGACCCGATCGATCCCCGACTTCCGCATCCTGCCCCT
CTGGCCGGTGAGCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCTCAGTGTAAGATCAGAATGGACCGAGGGTTGAGGTGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCAGGGCACCATCGTCGGAGCATCGCC
GGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
CACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAA
AATTTTAAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCTCGTTTCGTCGGTCGGCTTAGG
CATATGGAGTTCATTCCCATCTAAGATCAAACTGGGATCGAGGGGTGCA
Found at i:195802 original size:26 final size:26
Alignment explanation
Indices: 195765--195817 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
195755 GTTGACTTAG
195765 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
195791 GCATAC-GAAGTTCATTCCCAGTGTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
195817 G
1 G
195818 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:203165 original size:26 final size:26
Alignment explanation
Indices: 203129--203181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
203119 GTTGACTTAG
*
203129 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
203155 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
203181 G
1 G
203182 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:204044 original size:25 final size:26
Alignment explanation
Indices: 204006--204057 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
203996 GTTGACTTAG
204006 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
204032 GCATAC-GAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
204057 G
1 G
204058 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:204663 original size:872 final size:880
Alignment explanation
Indices: 202278--204758 Score: 4281
Period size: 872 Copynumber: 2.8 Consensus size: 880
202268 GTTGACTTAG
* * *
202278 GCATACGGAGTTCATTCCCA--GTAAGTATC-ACCA-AACGAGGGTTGTGGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTGTAAG-ATCGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* *
202339 CTCGGGCATGTGCTGGTGCGCATTTTTTTTTGCCC-GGGCACCAT-GCCGAAGCATCGTC-GAGA
65 CTCGGGCATGTGCTGGTGCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
*
202401 ACCTGACCGCGGCATTGGGG--CGACGATTGGGGGGCGGGTGGTGTGCGCACATGATGTGCGATG
130 ACCTGACCGCGGCATTGGGGTTCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATG
202464 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
202529 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
202594 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATG
325 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATG
202659 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
390 CCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
202724 AAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAACGAGTCGTCTTGCCATGA
454 AAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAACGAGTCGTCTTGCCATGA
202789 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
519 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
202854 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
584 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
202919 GCCTCTCTGGCC-GCGTAGTGCCCACCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
649 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
*
202982 TTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGTGGCAGCAAGATCAGCAGCACGCAGGG
714 TTCATTCCCAGTCTAAGATC--A---GACCAAGGGTTGCGGCAGCAAGATCAGCAGCACGCAGGG
* *
203047 GAGACCCGACCGATCCCCAGCTTGGGCATCCTGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCGT
774 GAGACCCAACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCGT
203112 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 TTC-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
203155 GCATACAGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAGGGTTGC--GTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTGTAAGATC-GACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * ** **
203218 CTCGAGCATGTGCTGGTGTCGTATTTTTTTTCGCCCGGGGCACCATCGTTGGAGCATCACCGGAG
65 CTCGGGCATGTGCTGGTG-CGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAG
203283 AACCTGACCAGCGGCATTGGGGTTCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
129 AACCTGACC-GCGGCATTGGGGTTCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
203348 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
203413 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-AAAAT-GG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
203476 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGC
203541 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAATT
387 ATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
203605 TT-AAAAAA-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
451 TTAAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA-AAAACGAGTCGTCTTGCC
203668 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
515 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
203733 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
580 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
203798 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
645 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
203863 GGAGTTCATTCCCAGTCTAAGATCAGA-CGAGGGTTGCGGTAGTAGGATC-GATAGCACGCAGGG
710 GGAGTTCATTCCCAGTCTAAGATCAGACCAAGGGTTGCGGCAGCAAGATCAG-CAGCACGCAGGG
*
203926 GGGACCCAACCGATCCCC-GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
774 GAGACCCAACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCG
203990 TTT-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 TTTCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
204032 GCATAC-GAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTGTAAGATC-GACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
*
204096 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAG
65 CTCGGGCATGTGCTGGTG-CGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAG
*
204161 AACCTGACCGC-GCATTGGGGTTCGGCGATT-GGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
129 AACCTGACCGCGGCATTGGGGTTCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
204224 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
204288 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
204353 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT-TGCAT
324 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAT
204417 GCCAAAAAAATACAAGGATCAC-TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
389 GCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
**
204481 AAAAAATCCGAACTATAAAAAGTTTCAAAAATC-TGAAAAA-AAAAACGAGTCGTCTTGCCATGA
454 AAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAACGAGTCGTCTTGCCATGA
204544 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
519 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
204609 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
584 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** *
204674 GCCTCTCTGGCCGATGTAGTGCCTG--C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
649 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
204736 TTCATTCCCAGTCTAAGATCAGA
714 TTCATTCCCAGTCTAAGATCAGA
204759 TCGGATCGAG
Statistics
Matches: 1535, Mismatches: 43, Indels: 60
0.94 0.03 0.04
Matches are distributed among these distances:
869 59 0.04
870 1 0.00
872 204 0.13
873 30 0.02
874 90 0.06
875 117 0.08
876 113 0.07
877 66 0.04
878 108 0.07
879 103 0.07
880 19 0.01
881 19 0.01
882 45 0.03
883 183 0.12
884 93 0.06
885 122 0.08
886 163 0.11
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (880 bp):
GCATACAGAGTTCATTCCCAGTGTAAGATCGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGC
TCGGGCATGTGCTGGTGCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
CCTGACCGCGGCATTGGGGTTCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGC
CAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
AAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAACGAGTCGTCTTGCCATGAAA
CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAAGGGTTGCGGCAGCAAGATCAGCAGCACGCAGGGGAGACCC
AACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCGTTTCTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:209353 original size:26 final size:26
Alignment explanation
Indices: 209317--209366 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
209307 GACTTAGGCG
*
209317 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
*
209343 TACGAAGTTCATTCCCAGTGTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
209367 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:209608 original size:895 final size:892
Alignment explanation
Indices: 207706--210123 Score: 3863
Period size: 895 Copynumber: 2.7 Consensus size: 892
207696 CGGTTTCCGA
* * *
207706 CGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATAT
1 CGATTGGGGGGC-GGGGGGTGTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATAT
* *
207771 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCCTAAAGAACATTTGAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
207836 AGGTTTGCTGCCAGTAGCCATTAAAGTGTC-AGAAATGGTGACACTTTTTTCAAATGGCCACAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
207900 ATCCTGTACACTTCGAGTTTTTAGCTGAATATTTTTGAGCATGCCAAAAAAAATACAAGTATCAC
194 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCAC
* *
207965 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTATAAAAATCCCGAACCGTAAAAA
259 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAATCCCGAACCGT-AAAA
* * *
208030 GTTTCAAAAATCATGAAAAATAGAAAATGATTCGTCTTGCCATGAAACTTCACATGAAGGCTTTA
322 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC-TTA
* *
208095 AGGGACCATTGGATTAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGT
386 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGT
* *
208160 GCCTAAACCCCACCTACCA-CAATCGATCCA-TGCTT-CGCAATCCCGATCTCTCTGGCGGCTTA
451 GCCTAAA-CCCACCTACCACCAATCGATCCACGGCTTGCGC-ATCCCG-TCTCTCTGGCGGCGTA
* * * *
208222 GTGCACGCCTTGCCTGCTCGTTTCGTCAGTTTGGGCTTAGTCATATGTGAGTTC--TCCCAGTCT
513 GTGCCCGCC-CGCCCGCTCGTTTCGTCAG-TT-GGCTTAGGCATATG-GAGTTCATTCCCAGTC-
208285 TAAAGTATCAGATCAGA-CGA-GGTTGCGGTAACAGGAGTCGATAGCACGTA-GGGGGACCCAAC
573 T-AAG-ATCAGATCAGACCGAGGGTTGCGGTAACAGGA-TCGATAGCACGTAGGGGGGACCCAAC
*
208347 CGATCCCCGACTTGCGCATCCTGCCCCTTCTGATCGGTGAGCACCCGCATGCTCGTTTCGGTGGG
635 CGATCCCCGACTTGCGCATCCTGCCCCTTCTGACCGGTGAGCACCCGCATGCTCGTTTCGGTGGG
*
208412 TTGACTTAGGCGTACGGGTTCATTTCCTAGTCTAAGCATACGAAGTATCATTCCCAGTGTAAGAT
700 TTGACTTAGGCGTACGGGTTCATTTCCCAGTCTAAGCATACGAAGTATCATTCCCAGTGTAAGAT
208477 CAGACCAGACCGAGGTTGCGGGTTGCACATGCTGGGCGTTGGGCATGTGCTGGTGCCACTTTTTT
765 CAGACCAGACCGAGGTTGCGGGTTGCACATGCTGGGCGTTGGGCATGTGCTGGTGCCACTTTTTT
208542 TTTGCCCGGGCACCATCGCACGGAGCATCGTCGGAGAACCTGACCGCGAATTGGGGTTCTGAG
830 TTTGCCCGGGCACCATCGCACGGAGCATCGTCGGAGAACCTGACCGCGAATTGGGGTTCTGAG
* *
208605 CGATT-GGGGGCGGGGGGTGGTGCACACATGATGTATGATGGGTGCCGGTACTTGGCCCTTATAT
1 CGATTGGGGGGCGGGGGGT-GTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATAT
208669 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
208734 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
208799 TCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACG
195 TCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACG
*
208864 TCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAGTT
260 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAGTT
208929 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
325 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
208994 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCT
390 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCT
209059 AAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
455 AAACCCACCTACCA-CCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTGCC
*
209124 CGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
518 CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
*
209189 TCAGACCAAGGGTTGCGGTAACAGGATCGATAGCACGTAGGGGGGACCCAACCGATCCCCGACTT
583 TCAGACCGAGGGTTGCGGTAACAGGATCGATAGCACGTAGGGGGGACCCAACCGATCCCCGACTT
209254 GCGCATCCTGCCCC-TCTGACCGGTTGAGCACCCGCATGCTCGTTTC-GTGGGTTGACTTAGGCG
648 GCGCATCCTGCCCCTTCTGACCGG-TGAGCACCCGCATGCTCGTTTCGGTGGGTTGACTTAGGCG
209317 TACGGAGTTCA-TTCCCAGTCTAAGCATACGAAGT-TCATTCCCAGTGTAAGATCAGACCAGACC
712 TACGG-GTTCATTTCCCAGTCTAAGCATACGAAGTATCATTCCCAGTGTAAGATCAGACCAGACC
209380 GAGGGTTGCGGG-TGCACATGCTGGGC-TTGGGCATGTGCTGGTGCCACTTTTTTTTTTCGCCCG
776 GA-GGTTGCGGGTTGCACATGCTGGGCGTTGGGCATGTGCTGGTGCCAC-TTTTTTTTT-GCCC-
209443 GGGCACCATCGC-CGGAGCATCGTCGGAGAACCTGACCGCGACATTGGGGTTCTG-G
837 GGGCACCATCGCACGGAGCATCGTCGGAGAACCTGACCGCGA-ATTGGGGTTCTGAG
209498 CGATTAGGGGGGCGGAGGGGTGTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
1 CGATT-GGGGGGCGG-GGGGTGTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
*
209563 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
64 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
209628 CAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAA
129 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
209693 ATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCAT-CCCAAAAAAAATACAAGGATCA
194 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCC-AAAAAAATACAAGGATCA
* * * **
209757 CCTCTACCAAGTTTGGGCCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAACTATAAAA
258 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT-AAAAAAATCCCGAACCGTAAAA
*
209822 GTTTCAAAAATCGTGAAAAA-AAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG-TTAA
322 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
*
209885 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
387 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
* * * *
209950 CCTAAACCCACCTACCATCCTATCGATCCACGGCTTGTGCATCCCGCCTCTCTGGTCGACGTAGT
452 CCTAAACCCACCTACCA-CCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGT
* * *
210015 GCCTGCCCGCCCACTCGTTTCGTCTA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
515 GCCCGCCCGCCCGCTCGTTTCGTC-AGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
** * * ** * *
210079 TGGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGTAGG
579 CAGATCAGACCGAGGGTTGCGGTAACAGGATCGATAGCACGTAGG
210124 TGTCATGGGC
Statistics
Matches: 1429, Mismatches: 65, Indels: 55
0.92 0.04 0.04
Matches are distributed among these distances:
891 21 0.01
892 65 0.05
893 124 0.09
894 355 0.25
895 396 0.28
896 142 0.10
897 51 0.04
898 269 0.19
899 6 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (892 bp):
CGATTGGGGGGCGGGGGGTGTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAGTTT
CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTA
AACCCACCTACCACCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGGCGTAGTGCCCGC
CCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCA
GACCGAGGGTTGCGGTAACAGGATCGATAGCACGTAGGGGGGACCCAACCGATCCCCGACTTGCG
CATCCTGCCCCTTCTGACCGGTGAGCACCCGCATGCTCGTTTCGGTGGGTTGACTTAGGCGTACG
GGTTCATTTCCCAGTCTAAGCATACGAAGTATCATTCCCAGTGTAAGATCAGACCAGACCGAGGT
TGCGGGTTGCACATGCTGGGCGTTGGGCATGTGCTGGTGCCACTTTTTTTTTGCCCGGGCACCAT
CGCACGGAGCATCGTCGGAGAACCTGACCGCGAATTGGGGTTCTGAG
Found at i:212978 original size:61 final size:59
Alignment explanation
Indices: 212860--213177 Score: 275
Period size: 61 Copynumber: 5.1 Consensus size: 59
212850 TCTTGTGCAG
* * * *
212860 GGAAAATTGATACTTTCAACTTTTCCCCAAGAAATA-TTTTTTTGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAA-AAAAACCTTTTTTG-AAATTTT-ATTTTTAA
212921 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAAAACCTTTTTTGAAATTTTATTTTTAAA
1 GGAAAATTGATACTTTCAACTTTTCCTC--AAAAAAACCTTTTTTGAAATTTTATTTTT-AA
* * ** * * *
212983 GAAAATTATACTTAAATTGATACTTTCAATTTTTTTTC--AAAAATCTTTTTGGAAACTTTGATT
1 G-------GA---AAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTGAAA-TTTTATT
*
213046 TTCAA
55 TTTAA
**
213051 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTTTTTAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACC--TTTTTTGAAATTTTATTTTTAA
* *
213112 GGAAAATTGATACTTTCAACTTTTTCTC-AAAAATCCTTTTTTTGAAATTTTATTTTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACC-TTTTTTGAAATTTTATTTTTA-A
213172 GGAAAA
1 GGAAAA
213178 AAAATAAAAG
Statistics
Matches: 211, Mismatches: 26, Indels: 41
0.76 0.09 0.15
Matches are distributed among these distances:
58 22 0.10
59 20 0.09
60 20 0.09
61 70 0.33
62 21 0.10
63 9 0.04
68 18 0.09
69 9 0.04
72 22 0.10
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTGAAATTTTATTTTTAA
Found at i:213220 original size:29 final size:30
Alignment explanation
Indices: 213176--213254 Score: 78
Period size: 29 Copynumber: 2.7 Consensus size: 30
213166 TTTAGAGGAA
*
213176 AAAAAATAAA-A-GAAAATAAAAGTGAAAAG-
1 AAAAAATAAATATAAAAATAAAAG-G-AAAGC
* *
213205 AAAAAA-ACATAAAAAAAT-AAAGGAAAGC
1 AAAAAATAAATATAAAAATAAAAGGAAAGC
213233 AAAAAATAAATATAAAAATAAA
1 AAAAAATAAATATAAAAATAAA
213255 TATAAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
27 4 0.10
28 9 0.22
29 21 0.51
30 7 0.17
ACGTcount: A:0.77, C:0.03, G:0.09, T:0.11
Consensus pattern (30 bp):
AAAAAATAAATATAAAAATAAAAGGAAAGC
Found at i:213255 original size:4 final size:4
Alignment explanation
Indices: 213236--213330 Score: 83
Period size: 4 Copynumber: 24.0 Consensus size: 4
213226 GGAAAGCAAA
* * *
213236 AAAT AAAT ATAA- AAAT AAAT --AT AAAA AAAT -ATT AAAT AAACCT AATCT
1 AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA--T AA-AT
*
213284 AA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAC AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
213331 TCAAAAAAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
2 2 0.03
3 7 0.09
4 58 0.77
5 5 0.07
6 3 0.04
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:214128 original size:9 final size:9
Alignment explanation
Indices: 214114--214190 Score: 57
Period size: 9 Copynumber: 8.1 Consensus size: 9
214104 AATCCAAGTC
214114 AAATAAATA
1 AAATAAATA
214123 AAATAAAATA
1 AAAT-AAATA
214133 AAATAAA-A
1 AAATAAATA
*
214141 AAATCAAACGA
1 AAAT-AAA-TA
*
214152 AAATAAATC
1 AAATAAATA
* *
214161 AGATAAATC
1 AAATAAATA
*
214170 AGATAAATTA
1 AAATAAA-TA
214180 AAATTAAATA
1 AAA-TAAATA
214190 A
1 A
214191 CAGATAATTA
Statistics
Matches: 57, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
8 5 0.09
9 25 0.44
10 18 0.32
11 9 0.16
ACGTcount: A:0.70, C:0.05, G:0.04, T:0.21
Consensus pattern (9 bp):
AAATAAATA
Found at i:214316 original size:22 final size:22
Alignment explanation
Indices: 214291--214392 Score: 89
Period size: 22 Copynumber: 4.5 Consensus size: 22
214281 TAATTCCCTA
* *
214291 AAAAATAATAATAAAAGAAAAG
1 AAAAATAAAAATAAAAGAAAAT
* *
214313 AAAAATATATATATACATATATAAAAT
1 AAAAATA-A-AAATA-A-A-AGAAAAT
* *
214340 AATAATAAAAATAAAATAAAAT
1 AAAAATAAAAATAAAAGAAAAT
*
214362 AAAAATAAAAATTAAA-AAAAT
1 AAAAATAAAAATAAAAGAAAAT
214383 AAAAATAAAA
1 AAAAATAAAA
214393 TGAAGAGAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
21 15 0.22
22 28 0.42
23 2 0.03
24 4 0.06
25 5 0.07
26 2 0.03
27 11 0.16
ACGTcount: A:0.75, C:0.01, G:0.02, T:0.22
Consensus pattern (22 bp):
AAAAATAAAAATAAAAGAAAAT
Found at i:214339 original size:43 final size:43
Alignment explanation
Indices: 214290--214417 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 43
214280 ATAATTCCCT
214290 AAAAAATAATAATAAAAGAAAAGAAAAATATATATATACA-TA
1 AAAAAATAATAATAAAAGAAAAGAAAAATATATATATACATTA
* * * * *
214332 TATAAAATAATAATAAAA-ATAAA-ATAAAATAAAAATAAAAATTA
1 -AAAAAATAATAATAAAAGA-AAAGA-AAAATATATATATACATTA
* *
214376 AAAAAATAAAAATAAAATGAAGAGAAAAAATATATATATACA
1 AAAAAATAATAATAAAA-GAAAAG-AAAAATATATATATACA
214418 GACTTACCCA
Statistics
Matches: 66, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
42 2 0.03
43 46 0.70
44 4 0.06
45 13 0.20
46 1 0.02
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.22
Consensus pattern (43 bp):
AAAAAATAATAATAAAAGAAAAGAAAAATATATATATACATTA
Found at i:214349 original size:11 final size:11
Alignment explanation
Indices: 214333--214393 Score: 65
Period size: 11 Copynumber: 5.6 Consensus size: 11
214323 ATATACATAT
*
214333 ATAAAATAATA
1 ATAAAATAAAA
214344 ATAAAA-ATAAA
1 ATAAAATA-AAA
214355 ATAAAATAAAA
1 ATAAAATAAAA
*
214366 ATAAAA-ATTAA
1 ATAAAATA-AAA
214377 A-AAAATAAAA
1 ATAAAATAAAA
214387 ATAAAAT
1 ATAAAAT
214394 GAAGAGAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
10 9 0.21
11 32 0.76
12 1 0.02
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:214370 original size:6 final size:6
Alignment explanation
Indices: 214335--214392 Score: 66
Period size: 6 Copynumber: 9.5 Consensus size: 6
214325 ATACATATAT
*
214335 AAAATA ATAATA AAAAT- AAAAT- AAAATA AAAATA AAAATTAAA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAA-T--A AAAATA
214384 AAAATA AAA
1 AAAATA AAA
214393 TGAAGAGAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
5 10 0.22
6 29 0.63
7 1 0.02
8 1 0.02
9 5 0.11
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:214380 original size:15 final size:14
Alignment explanation
Indices: 214340--214392 Score: 61
Period size: 16 Copynumber: 3.5 Consensus size: 14
214330 TATATAAAAT
214340 AATAATAAAAATAAA
1 AATAA-AAAAATAAA
*
214355 ATAAAATAAAAATAAA
1 A-ATAA-AAAAATAAA
214371 AATTAAAAAAATAAA
1 AA-TAAAAAAATAAA
214386 AATAAAA
1 AATAAAA
214393 TGAAGAGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 16 0.47
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AATAAAAAAATAAA
Found at i:214382 original size:9 final size:8
Alignment explanation
Indices: 214333--214387 Score: 51
Period size: 8 Copynumber: 6.9 Consensus size: 8
214323 ATATACATAT
*
214333 ATAAAATA
1 ATAAAAAA
214341 ATAATAAAA
1 ATAA-AAAA
214350 ATAAAATAA
1 ATAAAA-AA
*
214359 A-ATAAAA
1 ATAAAAAA
214366 AT-AAAAA
1 ATAAAAAA
*
214373 TTAAAAAA
1 ATAAAAAA
214381 ATAAAAA
1 ATAAAAA
214388 TAAAATGAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
7 8 0.21
8 20 0.53
9 10 0.26
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (8 bp):
ATAAAAAA
Found at i:214742 original size:41 final size:41
Alignment explanation
Indices: 214601--214808 Score: 241
Period size: 41 Copynumber: 5.1 Consensus size: 41
214591 TTTGATCAAA
* * *
214601 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATG
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATT
* * * *
214644 GCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAACT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAATAAATT
*
214686 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
214727 GCTCCTCTAAACAGAGGCACCACGACTTT-G---A-AAA-T
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
214762 GCTCCTCTAAACAGAGGCACCATGACTTT-GAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATT
*
214803 ACTCCT
1 GCTCCT
214809 TGACAATCAT
Statistics
Matches: 147, Mismatches: 11, Indels: 16
0.84 0.06 0.09
Matches are distributed among these distances:
35 30 0.20
36 3 0.02
38 1 0.01
40 4 0.03
41 43 0.29
42 34 0.23
43 32 0.22
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
Found at i:214772 original size:35 final size:36
Alignment explanation
Indices: 214639--214795 Score: 163
Period size: 35 Copynumber: 4.1 Consensus size: 36
214629 TGAGAAACAT
* * * *
214639 AAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGGAA
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTT-G-A
214677 AAATAAACTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAA
1 AAAT----TGCTCCTCTAAACAGAGGCACCACGACTTT-G--A
214720 GTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
1 --AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
*
214758 AAA-TGCTCCTCTAAACAGAGGCACCATGACTTTGA
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
214793 AAA
1 AAA
214796 GTAAATTACT
Statistics
Matches: 107, Mismatches: 5, Indels: 17
0.83 0.04 0.13
Matches are distributed among these distances:
35 34 0.32
36 3 0.03
38 5 0.05
40 1 0.01
41 30 0.28
42 28 0.26
43 2 0.02
45 4 0.04
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.22
Consensus pattern (36 bp):
AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
Found at i:215811 original size:8 final size:8
Alignment explanation
Indices: 215799--215917 Score: 109
Period size: 8 Copynumber: 14.6 Consensus size: 8
215789 TGAGTCCTCC
*
215799 TTTTTCAC
1 TTTTTCAT
215807 TTTTTC-T
1 TTTTTCAT
215814 TTTTTCAT
1 TTTTTCAT
215822 TTTTTCAT
1 TTTTTCAT
215830 TTTTTCAT
1 TTTTTCAT
215838 TTTTTCAT
1 TTTTTCAT
215846 TTTTTCAT
1 TTTTTCAT
**
215854 CATTT--T
1 TTTTTCAT
* *
215860 TTTCTCGT
1 TTTTTCAT
*
215868 TTTCTCAT
1 TTTTTCAT
215876 TTTTTCACCATTT
1 TTTTT---CA--T
215889 TTTTTCAT
1 TTTTTCAT
*
215897 TTTCTCAT
1 TTTTTCAT
215905 TTTTTCAT
1 TTTTTCAT
215913 TTTTT
1 TTTTT
215918 TTCAAGCATA
Statistics
Matches: 93, Mismatches: 10, Indels: 16
0.78 0.08 0.13
Matches are distributed among these distances:
6 3 0.03
7 6 0.06
8 74 0.80
10 2 0.02
11 2 0.02
13 6 0.06
ACGTcount: A:0.11, C:0.17, G:0.01, T:0.71
Consensus pattern (8 bp):
TTTTTCAT
Found at i:215889 original size:29 final size:29
Alignment explanation
Indices: 215829--215911 Score: 130
Period size: 30 Copynumber: 2.8 Consensus size: 29
215819 CATTTTTTCA
* *
215829 TTTTTTCATTTTTTCATTTTTTCATCATT
1 TTTTTTCATTTTCTCATTTTTTCACCATT
*
215858 TTTTTCTCGTTTTCTCATTTTTTCACCATT
1 TTTTT-TCATTTTCTCATTTTTTCACCATT
215888 TTTTTTCATTTTCTCATTTTTTCA
1 TTTTTTCATTTTCTCATTTTTTCA
215912 TTTTTTTTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 23 0.47
30 26 0.53
ACGTcount: A:0.12, C:0.18, G:0.01, T:0.69
Consensus pattern (29 bp):
TTTTTTCATTTTCTCATTTTTTCACCATT
Found at i:225861 original size:58 final size:57
Alignment explanation
Indices: 225739--225983 Score: 312
Period size: 58 Copynumber: 4.1 Consensus size: 57
225729 TCTTGTGCAG
*
225739 GGAAAATTGATACTTTCAACTTTTCCT-AAAAAAACCCTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA---TTTTTTGAAATTTTATTTTTAA
* * *
225798 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAA-TTTTATTTTTAA
*
225856 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC--AAAAA---TATTTTTTGAAATTTTATTTTTAA
* *
225918 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATCTTTTTTTGAAATTTTATTTTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTTGAAATTTTATTTTTA-A
225977 GGGAAAA
1 -GGAAAA
225984 AAATAAAATA
Statistics
Matches: 167, Mismatches: 9, Indels: 19
0.86 0.05 0.10
Matches are distributed among these distances:
57 10 0.06
58 60 0.36
59 28 0.17
60 22 0.13
62 37 0.22
63 10 0.06
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAATTTTATTTTTAA
Found at i:225972 original size:120 final size:117
Alignment explanation
Indices: 225739--225957 Score: 384
Period size: 120 Copynumber: 1.8 Consensus size: 117
225729 TCTTGTGCAG
225739 GGAAAATTGATACTTTCAACTTTTCCTAAAAAAACCCTTTTTTGAAATTTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTAAAAAAACCCTTTTTTGAAATTTTATTTTTAAGGAAAA
225804 TTGATACTTTCAACTTTTCCTCAAAAATATTTTTGGAAACTTTGATTTTCAA
66 TTGATACTTTCAACTTTTCCTCAAAAATATTTTTGGAAACTTTGATTTTCAA
*
225856 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTTTTGAAATTTTATTTTTAAGGA
1 GGAAAATTGATACTTTCAACTTTTCCT-AAAAAAACC--CTTTTTTGAAATTTTATTTTTAAGGA
* *
225921 AAATTGATACTTTCAACTTTTCCTTAAAAATCTTTTT
63 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTT
225958 TTGAAATTTT
Statistics
Matches: 96, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
117 27 0.28
118 9 0.09
120 60 0.62
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCTAAAAAAACCCTTTTTTGAAATTTTATTTTTAAGGAAAA
TTGATACTTTCAACTTTTCCTCAAAAATATTTTTGGAAACTTTGATTTTCAA
Found at i:225991 original size:5 final size:5
Alignment explanation
Indices: 225983--226053 Score: 51
Period size: 5 Copynumber: 14.6 Consensus size: 5
225973 TAGAGGGAAA
* * *
225983 AAAAT AAAAT AAAAT AAAAGT GAAAG AAAAA AAAAT AAAA- AATAA- AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT
* *
226033 -AAAG AAAGT AAAA- AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAA
226054 TAGAAAAGAA
Statistics
Matches: 52, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
4 11 0.21
5 37 0.71
6 4 0.08
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (5 bp):
AAAAT
Found at i:226040 original size:32 final size:33
Alignment explanation
Indices: 225980--226053 Score: 93
Period size: 32 Copynumber: 2.3 Consensus size: 33
225970 TTTTAGAGGG
*
225980 AAAAAAAT--AAAATAAAATAAAAGTGAAAGAA
1 AAAAAAATAAAAAATAAAATAAAAGAGAAAGAA
*
226011 AAAAAAATAAAAAATAAAA-AATAA-AGAAAGTA
1 AAAAAAATAAAAAATAAAATAA-AAGAGAAAGAA
226043 AAAAAAATAAA
1 AAAAAAATAAA
226054 TAGAAAAGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
31 8 0.21
32 19 0.50
33 11 0.29
ACGTcount: A:0.81, C:0.00, G:0.07, T:0.12
Consensus pattern (33 bp):
AAAAAAATAAAAAATAAAATAAAAGAGAAAGAA
Found at i:226041 original size:38 final size:36
Alignment explanation
Indices: 225981--226074 Score: 93
Period size: 36 Copynumber: 2.6 Consensus size: 36
225971 TTTAGAGGGA
225981 AAAAAATAAAATAAAATAAAAGTGAAAGAAAAAAAAAT
1 AAAAAATAAAATAAAATAAAAGT-AAA-AAAAAAAAAT
*
226019 AAAAAATAAAA-AATAA-AGAAAGTAAAAAAAATAAAT
1 AAAAAATAAAATAA-AATA-AAAGTAAAAAAAAAAAAT
* * * *
226055 AGAAAAGAATATTAAATAAA
1 AAAAAATAAAATAAAATAAA
226075 CCTAATCTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
36 21 0.45
37 8 0.17
38 18 0.38
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (36 bp):
AAAAAATAAAATAAAATAAAAGTAAAAAAAAAAAAT
Found at i:226119 original size:19 final size:19
Alignment explanation
Indices: 226015--226112 Score: 64
Period size: 18 Copynumber: 5.4 Consensus size: 19
226005 AAAGAAAAAA
*
226015 AAATAAAAAATAAAA-AAT
1 AAATAAATAATAAAATAAT
*
226033 AAAGAAAGTAA-AAAA-AAT
1 AAATAAA-TAATAAAATAAT
* * *
226051 AAATAGA-AA-AGAATATT
1 AAATAAATAATAAAATAAT
** **
226068 AAATAAA-CCTAATCTAAT
1 AAATAAATAATAAAATAAT
226086 AAATAAATAATAAAATAAT
1 AAATAAATAATAAAATAAT
226105 AAATAAAT
1 AAATAAAT
226113 TCAAAAAAAA
Statistics
Matches: 59, Mismatches: 17, Indels: 7
0.71 0.20 0.08
Matches are distributed among these distances:
16 5 0.08
17 8 0.14
18 29 0.49
19 17 0.29
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.21
Consensus pattern (19 bp):
AAATAAATAATAAAATAAT
Found at i:226926 original size:22 final size:23
Alignment explanation
Indices: 226896--226942 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
226886 CAAGTCAGAT
* *
226896 AAATCAAAAAT-AAAATAAAATA
1 AAATAAAAAATCAAAAGAAAATA
*
226918 AAATAAAAAATCAAACGAAAATA
1 AAATAAAAAATCAAAAGAAAATA
226941 AA
1 AA
226943 TCAATAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (23 bp):
AAATAAAAAATCAAAAGAAAATA
Found at i:226943 original size:22 final size:22
Alignment explanation
Indices: 226894--226953 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 22
226884 TCCAAGTCAG
* *
226894 ATAAATCAAAAAT-AAAATAAA
1 ATAAATAAAAAATCAAAAGAAA
*
226915 ATAAAATAAAAAATCAAACGAAA
1 AT-AAATAAAAAATCAAAAGAAA
*
226938 ATAAATCAATAAATCA
1 ATAAAT-AAAAAATCA
226954 GATAAATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 14 0.44
23 16 0.50
ACGTcount: A:0.72, C:0.08, G:0.02, T:0.18
Consensus pattern (22 bp):
ATAAATAAAAAATCAAAAGAAA
Found at i:226951 original size:23 final size:22
Alignment explanation
Indices: 226894--226953 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
226884 TCCAAGTCAG
*
226894 ATAAATCAAAAAT-AAAATAAA
1 ATAAATCAAAAATCAAAAGAAA
* *
226915 ATAAAATAAAAAATCAAACGAAA
1 AT-AAATCAAAAATCAAAAGAAA
226938 ATAAATCAATAAATCA
1 ATAAATCAA-AAATCA
226954 GATAAATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 16 0.50
23 14 0.44
ACGTcount: A:0.72, C:0.08, G:0.02, T:0.18
Consensus pattern (22 bp):
ATAAATCAAAAATCAAAAGAAA
Found at i:226967 original size:12 final size:12
Alignment explanation
Indices: 226952--226992 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
226942 ATCAATAAAT
226952 CAGATAAATTAA
1 CAGATAAATTAA
226964 CAGATAAATTAA
1 CAGATAAATTAA
226976 -A-ATTAAA-TAA
1 CAGA-TAAATTAA
226986 CAGATAA
1 CAGATAA
226993 TTACATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 4 0.15
11 9 0.35
12 13 0.50
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.24
Consensus pattern (12 bp):
CAGATAAATTAA
Found at i:227032 original size:3 final size:3
Alignment explanation
Indices: 227026--227056 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
227016 AAAAGAAAAA
227026 AAT AAT AAT AA- AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
227057 AGATATATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:227043 original size:14 final size:14
Alignment explanation
Indices: 227021--227056 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
227011 AAAAAAAAAG
*
227021 AAAAAAATAATAAT
1 AAAATAATAATAAT
227035 AAAATAATAATAAT
1 AAAATAATAATAAT
227049 AATAATAA
1 AA-AATAA
227057 AGATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (14 bp):
AAAATAATAATAAT
Found at i:227198 original size:19 final size:18
Alignment explanation
Indices: 227141--227218 Score: 70
Period size: 19 Copynumber: 4.2 Consensus size: 18
227131 ATACACATAT
*
227141 AAAATAATAAAAAAAAAT-
1 AAAATAA-AAATAAAAATA
227159 AAAAT-AAAATAAAAATGTA
1 AAAATAAAAATAAAAA--TA
227178 AAAATACAAAATAAAAATA
1 AAAATA-AAAATAAAAATA
**
227197 AATTTAAAAAATAAAAATA
1 AAAAT-AAAAATAAAAATA
227216 AAA
1 AAA
227219 TGAAGAGAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
16 8 0.16
17 1 0.02
18 6 0.12
19 24 0.48
20 1 0.02
21 10 0.20
ACGTcount: A:0.78, C:0.01, G:0.01, T:0.19
Consensus pattern (18 bp):
AAAATAAAAATAAAAATA
Found at i:227219 original size:5 final size:6
Alignment explanation
Indices: 227141--227218 Score: 70
Period size: 6 Copynumber: 12.5 Consensus size: 6
227131 ATACACATAT
*
227141 AAAATA ATAAAAA AAAAT- AAAAT- AAAATA AAAATGTA AAAATA CAAAATA
1 AAAATA A-AAATA AAAATA AAAATA AAAATA AAAA--TA AAAATA -AAAATA
**
227191 AAAATA AATTTAA AAAATA AAAATA AAA
1 AAAATA AAAAT-A AAAATA AAAATA AAA
227219 TGAAGAGAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
5 10 0.17
6 29 0.48
7 15 0.25
8 6 0.10
ACGTcount: A:0.78, C:0.01, G:0.01, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:230842 original size:26 final size:26
Alignment explanation
Indices: 230790--230842 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
230780 GTTGACTTAG
*
230790 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGACTAA
* *
230816 GCATATGGCGTTCATTCCCAGAGTAA
1 GCATATGGAGTTCATTCCCAGACTAA
230842 G
1 G
230843 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGACTAA
Found at i:236313 original size:516 final size:516
Alignment explanation
Indices: 235336--237403 Score: 3875
Period size: 516 Copynumber: 4.0 Consensus size: 516
235326 GATTGAAAGC
*
235336 AATTGAAAGTCATGATGTCTATGAGAATGTTGACGCCAATGAGCTTAGTCTAGTGCCTGATCTCA
1 AATTAAAAGTCATGATGTCTATGAGAATGTTGACGCCAATGAGCTTAGTCTAGTGCCTGATCTCA
* *
235401 TTATTCCATCAAAATTCAAAGCCCCAAAATTTGAAAAGTATAACGAAACTGGATGTCCTAAAATA
66 TTATTCCATCAAAATTCAAAGCCCCAAATTTTGAAAAGTATAACGGAACTGGATGTCCTAAAATA
235466 CATTTGGCTCAATACTGTCACAAAATGGTTAGGTATGCTGGTGATGAAAAGCTACTTATTCATGT
131 CATTTGGCTCAATACTGTCACAAAATGGTTAGGTATGCTGGTGATGAAAAGCTACTTATTCATGT
235531 CTTTCAAGAAAGTTTGACTGGGACAACAGCTAATTGGTATCATAGTTTGAAAAGCAGTCAAATTC
196 CTTTCAAGAAAGTTTGACTGGGACAACAGCTAATTGGTATCATAGTTTGAAAAGCAGTCAAATTC
*
235596 ATACTCGGAAAGATTTATCACGGGCATTCTTGAAGCAATACCAATATATGTTGAAGTTAGCTCTG
261 ATACTCGAAAAGATTTATCACGGGCATTCTTGAAGCAATACCAATATATGTTGAAGTTAGCTCTG
235661 AATCGATTAACCCTCCAAAATATGAGAAAGAACCCAATGAGAGCTACAAAGAATATGCTGTTAGA
326 AATCGATTAACCCTCCAAAATATGAGAAAGAACCCAATGAGAGCTACAAAGAATATGCTGTTAGA
*
235726 TGGAAGAATATGGCATCACAGGTATAACCACCTCTTACTAATAGGGAGTTGAATTCCCTGTTTGT
391 TGGAAGAATATGGCATCACAGGTACAACCACCTCTTACTAATAGGGAGTTGAATTCCCTGTTTGT
* *
235791 GGATACCCTTTCTTCTTCCTATTATGATAAGTTGATCAGCAATACTTCATAAGAGTTTCCA
456 GGATACCCTTCCTTCTCCCTATTATGATAAGTTGATCAGCAATACTTCATAAGAGTTTCCA
235852 AATTAAAAGTCATGATGTCTATGAGAATGTTGACGCCAATGAGCTTAGTCTAGTGCCTGATCTCA
1 AATTAAAAGTCATGATGTCTATGAGAATGTTGACGCCAATGAGCTTAGTCTAGTGCCTGATCTCA
*
235917 TTATTCCATCAAAATTCAAAGCCCTAAATTTTGAAAAGTATAACGGAACTGGATGTCCTAAAATA
66 TTATTCCATCAAAATTCAAAGCCCCAAATTTTGAAAAGTATAACGGAACTGGATGTCCTAAAATA
235982 CATTTGGCTCAATACTGTCACAAAATGGTTAGGTATGCTGGTGATGAAAAGCTACTTATTCATGT
131 CATTTGGCTCAATACTGTCACAAAATGGTTAGGTATGCTGGTGATGAAAAGCTACTTATTCATGT
236047 CTTTCAAGAAAGTTTGACTGGGACAACAGCTAATTGGTATCATAGTTTGAAAAGCAGTCAAATTC
196 CTTTCAAGAAAGTTTGACTGGGACAACAGCTAATTGGTATCATAGTTTGAAAAGCAGTCAAATTC
*
236112 ATACTCAAAAAGATTTATCACGGGCATTCTTGAAGCAATACCAATATATGTTGAAGTTAGCTCTG
261 ATACTCGAAAAGATTTATCACGGGCATTCTTGAAGCAATACCAATATATGTTGAAGTTAGCTCTG
*
236177 AATCGATTAACCCTCCAAAATATGAGAAAGAACCCAATGAGGGCTACAAAGAATATGCTGTTAGA
326 AATCGATTAACCCTCCAAAATATGAGAAAGAACCCAATGAGAGCTACAAAGAATATGCTGTTAGA
236242 TGGAAGAATATGGCATCACAGGTACAACCACCTCTTACTAATAGGGAGTTGAATTCCCTGTTTGT
391 TGGAAGAATATGGCATCACAGGTACAACCACCTCTTACTAATAGGGAGTTGAATTCCCTGTTTGT
236307 GGATACCCTTCCTTCTCCCTATTATGATAAGTTGATCAGCAATACTTCATAAGAGTTTCCA
456 GGATACCCTTCCTTCTCCCTATTATGATAAGTTGATCAGCAATACTTCATAAGAGTTTCCA
* *
236368 AATTAAAAGTCATGATGTCTATGAGAATGTTGACACTAATGAGCTTAGTCTAGTGCCTGATCTCA
1 AATTAAAAGTCATGATGTCTATGAGAATGTTGACGCCAATGAGCTTAGTCTAGTGCCTGATCTCA
236433 TTATTCCATCAAAATTCAAAGCCCCAAATTTTGAAAAGTATAACGGAACTGGATGTCCTAAAATA
66 TTATTCCATCAAAATTCAAAGCCCCAAATTTTGAAAAGTATAACGGAACTGGATGTCCTAAAATA
* *
236498 CATTTGGCTCAATACTGTCACAAAATGGTTGGGTATGCTGGTGATGAAAAGCTATTTATTCATGT
131 CATTTGGCTCAATACTGTCACAAAATGGTTAGGTATGCTGGTGATGAAAAGCTACTTATTCATGT
236563 CTTTCAAGAAAGTTTGACTGGGACAACAGCTAATTGGTATCATAGTTTGAAAAGCAGTCAAATTC
196 CTTTCAAGAAAGTTTGACTGGGACAACAGCTAATTGGTATCATAGTTTGAAAAGCAGTCAAATTC
236628 ATACTCGAAAAGATTTATCACGGGCATTCTTGAAGCAATACCAATATATGTTGAAGTTAGCTCTG
261 ATACTCGAAAAGATTTATCACGGGCATTCTTGAAGCAATACCAATATATGTTGAAGTTAGCTCTG
*
236693 AATCGATTAACCCTCCAAAATATGAGAAAGAACCCAATGAGAGCTACAAAGAATATACTGTTAGA
326 AATCGATTAACCCTCCAAAATATGAGAAAGAACCCAATGAGAGCTACAAAGAATATGCTGTTAGA
*
236758 TGAAAGAATATGGCATCACAGGTACAACCACCTCTTACTAATAGGGAGTTGAATTCCCTGTTTGT
391 TGGAAGAATATGGCATCACAGGTACAACCACCTCTTACTAATAGGGAGTTGAATTCCCTGTTTGT
* * *
236823 GGATACCCTTCCTTCTTCCTATTATGATAAGTTGATCAGCAATAATTTATAAGAGTTTCCA
456 GGATACCCTTCCTTCTCCCTATTATGATAAGTTGATCAGCAATACTTCATAAGAGTTTCCA
*
236884 AATTGAAAGTCATGATGTCTATGAGAATGTTGACGCCAATGAGCTTAGTCTAGTGCCTGATCTCA
1 AATTAAAAGTCATGATGTCTATGAGAATGTTGACGCCAATGAGCTTAGTCTAGTGCCTGATCTCA
* *
236949 TTATTCTATCAAAATTCAAAGCCCCAAATTTTGAAAAGTATAACAGAACTGGATGTCCTAAAATA
66 TTATTCCATCAAAATTCAAAGCCCCAAATTTTGAAAAGTATAACGGAACTGGATGTCCTAAAATA
*
237014 CATTTGGCTCAATACTGTCACAAAATGGTTGGGTATGCTGGTGATGAAAAGCTACTTATTCATGT
131 CATTTGGCTCAATACTGTCACAAAATGGTTAGGTATGCTGGTGATGAAAAGCTACTTATTCATGT
*
237079 CTTTCAAGAAAGTTTGACTGGGATAACAGCTAATTGGTATCATAGTTTGAAAAGCAGTCAAATTC
196 CTTTCAAGAAAGTTTGACTGGGACAACAGCTAATTGGTATCATAGTTTGAAAAGCAGTCAAATTC
237144 ATACTCGAAAAGATTTATCACGGGCATTCTTGAAGCAATACCAATATATGTTGAAGTTAGCTCTG
261 ATACTCGAAAAGATTTATCACGGGCATTCTTGAAGCAATACCAATATATGTTGAAGTTAGCTCTG
* * *
237209 AATCGATTAACCCTCTAAAATATGAGAAAGAACCCAATGACAACTACAAAGAATATGCTGTTAGA
326 AATCGATTAACCCTCCAAAATATGAGAAAGAACCCAATGAGAGCTACAAAGAATATGCTGTTAGA
*
237274 TGGAAGACTATGGCATCACAGGTACAACCACCTCTTACTAATAGGGAGTTGAATTCCCTGTTTGT
391 TGGAAGAATATGGCATCACAGGTACAACCACCTCTTACTAATAGGGAGTTGAATTCCCTGTTTGT
*
237339 GGATACCCTTCTTTCTCCCTATTATGATAAGTTGATCAGCAATACTTCATAAGAGTTTCCA
456 GGATACCCTTCCTTCTCCCTATTATGATAAGTTGATCAGCAATACTTCATAAGAGTTTCCA
237400 AATT
1 AATT
237404 TATTGTTTGC
Statistics
Matches: 1513, Mismatches: 39, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
516 1513 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (516 bp):
AATTAAAAGTCATGATGTCTATGAGAATGTTGACGCCAATGAGCTTAGTCTAGTGCCTGATCTCA
TTATTCCATCAAAATTCAAAGCCCCAAATTTTGAAAAGTATAACGGAACTGGATGTCCTAAAATA
CATTTGGCTCAATACTGTCACAAAATGGTTAGGTATGCTGGTGATGAAAAGCTACTTATTCATGT
CTTTCAAGAAAGTTTGACTGGGACAACAGCTAATTGGTATCATAGTTTGAAAAGCAGTCAAATTC
ATACTCGAAAAGATTTATCACGGGCATTCTTGAAGCAATACCAATATATGTTGAAGTTAGCTCTG
AATCGATTAACCCTCCAAAATATGAGAAAGAACCCAATGAGAGCTACAAAGAATATGCTGTTAGA
TGGAAGAATATGGCATCACAGGTACAACCACCTCTTACTAATAGGGAGTTGAATTCCCTGTTTGT
GGATACCCTTCCTTCTCCCTATTATGATAAGTTGATCAGCAATACTTCATAAGAGTTTCCA
Found at i:238955 original size:11 final size:11
Alignment explanation
Indices: 238941--238978 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
238931 CAAAAACAAT
238941 AAAAAAAGAGA
1 AAAAAAAGAGA
238952 AAAAAAAGA-A
1 AAAAAAAGAGA
238962 AAAAAAAGAAGA
1 AAAAAAAG-AGA
238974 AAAAA
1 AAAAA
238979 TTGGTTATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 9 0.36
11 10 0.40
12 6 0.24
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAGA
Found at i:238966 original size:22 final size:22
Alignment explanation
Indices: 238932--238978 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
238922 TAAAAAAAAC
238932 AAAAACAATAAAAAAAG-AGAAA
1 AAAAACAA-AAAAAAAGAAGAAA
*
238954 AAAAAGAAAAAAAAAGAAGAAA
1 AAAAACAAAAAAAAAGAAGAAA
238976 AAA
1 AAA
238979 TTGGTTATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.85, C:0.02, G:0.11, T:0.02
Consensus pattern (22 bp):
AAAAACAAAAAAAAAGAAGAAA
Found at i:238971 original size:19 final size:19
Alignment explanation
Indices: 238923--238978 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
238913 ATAGGGGCAT
* * *
238923 AAAAAAAACAAAAACAATA
1 AAAAAAAAGAAAAAAAAGA
*
238942 AAAAAAGAGAAAAAAAAGA
1 AAAAAAAAGAAAAAAAAGA
238961 AAAAAAAAGAAGAAAAAA
1 AAAAAAAAGAA-AAAAAA
238979 TTGGTTATGA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 25 0.81
20 6 0.19
ACGTcount: A:0.86, C:0.04, G:0.09, T:0.02
Consensus pattern (19 bp):
AAAAAAAAGAAAAAAAAGA
Found at i:238976 original size:9 final size:9
Alignment explanation
Indices: 238923--238978 Score: 58
Period size: 10 Copynumber: 5.9 Consensus size: 9
238913 ATAGGGGCAT
*
238923 AAAAAAAAC
1 AAAAAAAAG
* *
238932 AAAAACAAT
1 AAAAAAAAG
238941 AAAAAAAGAG
1 AAAAAAA-AG
238951 AAAAAAAAG
1 AAAAAAAAG
238960 AAAAAAAAAG
1 -AAAAAAAAG
238970 AAGAAAAAA
1 AA-AAAAAA
238979 TTGGTTATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
9 17 0.43
10 23 0.57
ACGTcount: A:0.86, C:0.04, G:0.09, T:0.02
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:240292 original size:33 final size:32
Alignment explanation
Indices: 240245--240490 Score: 216
Period size: 33 Copynumber: 7.5 Consensus size: 32
240235 ATAAAATAAA
*
240245 ATTTAAGCCTAGTTTATCTGGTCTCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGG-CTCAAATGAAG
* *
240278 ATTTAAGCCCAGTTTATTTGGC-CATCAATG-AT
1 ATTTAAGCCCAGTTTATCTGGCTCA--AATGAAG
* *
240310 ATTTAAGCCTAGTGTATCTGGC-CATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCTCA--AATGAAG
* *
240343 CTTTAAGCCCAGTTTATCTGGCTCTCAATGAA-
1 ATTTAAGCCCAGTTTATCTGGCTC-AAATGAAG
*
240375 ACTTTAAGCCCAGTTTATTTGGC-CATTAATGAAG
1 A-TTTAAGCCCAGTTTATCTGGCTCA--AATGAAG
* * *
240409 CTTTAAGCCCAGTTCATCTGGC-CATCAATGAGG
1 ATTTAAGCCCAGTTTATCTGGCTCA--AATGAAG
* * *
240442 TTTTAAACCTAGTTTATCTGGCTTCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGC-TCAAATGAAG
240475 ATTTAAGCCCAGTTTA
1 ATTTAAGCCCAGTTTA
240491 GCTAGCCTTC
Statistics
Matches: 174, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
31 2 0.01
32 29 0.17
33 140 0.80
34 1 0.01
35 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35
Consensus pattern (32 bp):
ATTTAAGCCCAGTTTATCTGGCTCAAATGAAG
Found at i:240408 original size:66 final size:65
Alignment explanation
Indices: 240243--240522 Score: 320
Period size: 66 Copynumber: 4.3 Consensus size: 65
240233 AAATAAAATA
*
240243 AAATTTAAGCCTAGTTTATCTGGTCTCA--AATGAAGATTTAAGCCCAGTTTATTTGGCCATCAA
1 AAATTTAAGCCTAGTTTATCTGG-C-CATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAA
240306 TG
64 TG
* * *
240308 ATATTTAAGCCTAGTGTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCTC-TCAAT
1 AAATTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGC-CATCAAT
240372 G
65 G
* * * *
240373 AAACTTTAAGCCCAGTTTATTTGGCCATTAATGAAGCTTTAAGCCCAGTTCATCTGGCCATCAAT
1 AAA-TTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAAT
240438 G
65 G
** * * * *
240439 AGGTTTTAAACCTAGTTTATCTGG-C-TTCAAATGAAGATTTAAGCCCAGTTTAGCTAGCCTTCA
1 A-AATTTAAGCCTAGTTTATCTGGCCATT--AATGAAGATTTAAGCCCAGTTTATCTGGCCATCA
240502 AT-
63 ATG
*
240504 AAATTTAAGCCAAGTTTAT
1 AAATTTAAGCCTAGTTTAT
240523 TTAGCCCCAA
Statistics
Matches: 184, Mismatches: 23, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
63 2 0.01
64 17 0.09
65 59 0.32
66 106 0.58
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (65 bp):
AAATTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATG
Found at i:240456 original size:99 final size:99
Alignment explanation
Indices: 240246--240490 Score: 349
Period size: 99 Copynumber: 2.5 Consensus size: 99
240236 TAAAATAAAA
240246 TTTAAGCCTAGTTTATCTGG-TCTCAAATGAAGATTTAAGCCCAGTTTATTTGGCCATCAATGAT
1 TTTAAGCCTAGTTTATCTGGCTCTCAAATGAAGATTTAAGCCCAGTTTATTTGGCCATCAATGAT
* *
240310 ATTTAAGCCTAGTGTATCTGGCCATTAATGAAGC
66 ATTTAAGCCCAGTGTATCTGGCCATCAATGAAGC
* *
240344 TTTAAGCCCAGTTTATCTGGCTCTC-AATGAA-ACTTTAAGCCCAGTTTATTTGGCCATTAATGA
1 TTTAAGCCTAGTTTATCTGGCTCTCAAATGAAGA-TTTAAGCCCAGTTTATTTGGCCATCAATGA
* *
240407 -AGCTTTAAGCCCAGT-TCATCTGGCCATCAATGAGGT
65 TA--TTTAAGCCCAGTGT-ATCTGGCCATCAATGAAGC
*
240443 TTTAAACCTAGTTTATCTGGCT-TCAAATGAAGATTTAAGCCCAGTTTA
1 TTTAAGCCTAGTTTATCTGGCTCTCAAATGAAGATTTAAGCCCAGTTTA
240491 GCTAGCCTTC
Statistics
Matches: 132, Mismatches: 8, Indels: 13
0.86 0.05 0.08
Matches are distributed among these distances:
97 2 0.02
98 57 0.43
99 72 0.55
100 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (99 bp):
TTTAAGCCTAGTTTATCTGGCTCTCAAATGAAGATTTAAGCCCAGTTTATTTGGCCATCAATGAT
ATTTAAGCCCAGTGTATCTGGCCATCAATGAAGC
Found at i:241343 original size:23 final size:23
Alignment explanation
Indices: 241313--241379 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
241303 ACCCGAGTCA
241313 ATTCTGTAAGACCTTCGGGCATG
1 ATTCTGTAAGACCTTCGGGCATG
* * *
241336 ATTCTGTAAGACATTCGAGCACG
1 ATTCTGTAAGACCTTCGGGCATG
* *
241359 ATT-TCTAAGACCTCCGGGCAT
1 ATTCTGTAAGACCTTCGGGCAT
241380 AATTTCGATT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 13 0.36
23 23 0.64
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.28
Consensus pattern (23 bp):
ATTCTGTAAGACCTTCGGGCATG
Found at i:241471 original size:133 final size:133
Alignment explanation
Indices: 241298--241592 Score: 380
Period size: 133 Copynumber: 2.2 Consensus size: 133
241288 CTGACTTGCA
* * * * *
241298 ATGTTA-CCCGAGTCAATTCTGTAAGACCTTCGGGCATGATTCTGTAAGACATTC-GAGCACGAT
1 ATGTTATCCC-AGTCGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCCAG-GCACGAT
*
241361 T-TCTAAGACCTCCGGGCATAATTTCGATTCACGATATTATCCCGATCAATTCCTTATCTTTCGA
64 TCT-TAAGACCTCCGAGCATAATTTCGATTCACGATATTATCCCGATCAATTCCTTATCTTTCGA
241425 CTTACG
128 CTTACG
* * * * *
241431 ATTTTATTCCAGTCGATTCTATAAGACCTCCGGGCATGATTCTATAAGACCTCCAGGTATGATTC
1 ATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCCAGGCACGATTC
* * * * * *
241496 TTAAGACCTCCGAGCGTAATTTTGATTCACGGTGTTATCCCGATCGATTCCTTATCTTTTGACTT
66 TTAAGACCTCCGAGCATAATTTCGATTCACGATATTATCCCGATCAATTCCTTATCTTTCGACTT
241561 ACG
131 ACG
*
241564 ATGTTATCCCAGTCGATTTTGTAAGACCT
1 ATGTTATCCCAGTCGATTCTGTAAGACCT
241593 TCAGACATAA
Statistics
Matches: 138, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
133 134 0.97
134 4 0.03
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (133 bp):
ATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCCAGGCACGATTC
TTAAGACCTCCGAGCATAATTTCGATTCACGATATTATCCCGATCAATTCCTTATCTTTCGACTT
ACG
Found at i:241475 original size:23 final size:23
Alignment explanation
Indices: 241445--241507 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
241435 TATTCCAGTC
241445 GATTCTATAAGACCTCCGGGCAT
1 GATTCTATAAGACCTCCGGGCAT
* *
241468 GATTCTATAAGACCTCCAGGTAT
1 GATTCTATAAGACCTCCGGGCAT
241491 GATTCT-TAAGACCTCCG
1 GATTCTATAAGACCTCCG
241508 AGCGTAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
22 10 0.27
23 27 0.73
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (23 bp):
GATTCTATAAGACCTCCGGGCAT
Found at i:241646 original size:88 final size:87
Alignment explanation
Indices: 241491--241720 Score: 286
Period size: 88 Copynumber: 2.6 Consensus size: 87
241481 CTCCAGGTAT
* * *
241491 GATTCT-TAAGACCTCC-GAGCGTAATTTTGATTCACGGTGTTATCCCGATCGATTCCTTATCTT
1 GATTCTGTAAGACCTCCAGA-CATAATTTCGATTCGCGGTGTTATCCCGATCGATTCCTTATCTT
*
241554 TTGACTTACGATGTTATCCCAGTC
65 TTGAC-TACGATGTTATCCCAATC
* * *
241578 GATTTTGTAAGACCTTCAGACATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTT
1 GATTCTGTAAGACCTCCAGACATAATTTCGATTCGCGGTGTTATCCCGATCGATTCCTTATCTTT
*
241643 TGACTGCGATGTTATCCCAATC
66 TGACTACGATGTTATCCCAATC
* * * * *
241665 TATTCTGTAAGACCTCCGGGCATAATTTCGATT-GACGTGTGTTATCTCGATTGATT
1 GATTCTGTAAGACCTCCAGACATAATTTCGATTCG-CG-GTGTTATCCCGATCGATT
241721 TATTATTTTT
Statistics
Matches: 124, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
86 1 0.01
87 51 0.41
88 70 0.56
89 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39
Consensus pattern (87 bp):
GATTCTGTAAGACCTCCAGACATAATTTCGATTCGCGGTGTTATCCCGATCGATTCCTTATCTTT
TGACTACGATGTTATCCCAATC
Found at i:241928 original size:10 final size:10
Alignment explanation
Indices: 241905--241938 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
241895 ATATTATACG
241905 AAATACAAAAA
1 AAATA-AAAAA
241916 AAATAACAAAA
1 AAATAA-AAAA
241927 AAATAAAAAA
1 AAATAAAAAA
241937 AA
1 AA
241939 GAAAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.32
11 15 0.68
ACGTcount: A:0.85, C:0.06, G:0.00, T:0.09
Consensus pattern (10 bp):
AAATAAAAAA
Found at i:243327 original size:17 final size:17
Alignment explanation
Indices: 243307--243350 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
243297 AAAACCCTTA
243307 AAAATCCAAAATCC-CCT
1 AAAATCCAAAA-CCTCCT
* *
243324 AAAATTCAAAACCTCTT
1 AAAATCCAAAACCTCCT
243341 AAAATCCAAA
1 AAAATCCAAA
243351 GTCCTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.20
Consensus pattern (17 bp):
AAAATCCAAAACCTCCT
Found at i:244983 original size:26 final size:26
Alignment explanation
Indices: 244954--245006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
244944 GTAGACTTAG
*
244954 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
244980 GCATACGGAGTTCATTCCAAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
245006 G
1 G
245007 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:245888 original size:26 final size:26
Alignment explanation
Indices: 245852--245904 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
245842 GTTGACTTAG
245852 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
245878 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
245904 G
1 G
245905 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:246396 original size:885 final size:899
Alignment explanation
Indices: 244274--246626 Score: 3670
Period size: 885 Copynumber: 2.6 Consensus size: 899
244264 TGTTACAACA
* **
244274 ATGTGTGATGAGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAA
1 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
244338 CTCTCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCT
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
244403 AAAAT-GGGACAATTTTTTTAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
131 GAAATGGGGACAATTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
** *
244467 TTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGGGCCAAAAATCTTTCTG
196 TTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTG
*
244532 AAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
261 AAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
244597 CGTCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
326 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * * *
244662 ATCGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATTGATCCACG
391 AAGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
244727 GCTTTCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGTCGGCTCGTTTCGTCGGTTGGCA
456 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCT
* * **
244792 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGGCAGCAAAATCG
521 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAAAATCG
* ** * *
244857 ACAGTATGCAGAGGGGGACTCGGCCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCAGGCTAAG
586 ACAGCACACAGAGGGGGACTCCGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCAGGCTAAG
*
244922 CACCCGCATGCTCGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
651 CACCCGCACGCTCGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
244987 GAGTTCATTCCAAGTGTAAGATCGGACTGGACTGAGGCTTGTGGGTGCACATGCTGGGCTTGGGC
716 GAGTTCATTCCAAGTGTAAGATCGGACCGGACTGAGGCTTGTCGGTGCACATGCTGGGCTTGGGC
*
245052 ATGTGCTGGTGCCGCATTTTTTTCGCTCGGGGCGCCATAGCCGGAGCATCGCCGGAGAACCTAAC
781 ATGTGCTGGTGCCGCATTTTTTTCGCTCGGGGCACCATAGCCGGAGCATCGCCGGAGAACCTAAC
*
245117 CGGCGGCATTGGAGGTTCCGGCGATTTGGGGGGGCAAGGGGGGTGTAAGCACATG
846 CGACGGCATTGGAGGTTCCGGCGATTTGGGGGGGC-AGGGGGGTGTAAGCACATG
* *
245172 ATGTGTGATGGGTGCTGGTACATGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAA
1 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
245237 CTCACACCCCCTTAAAGAGCATTTGAGATTTTTACGGGTTTGCTGCCAGTAGCGATTAAAGTGTC
66 CTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * **
245302 TGAAATGGTGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTCCTGAATT
130 TGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* *
245367 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCT
195 TTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT
* *
245432 GAAGAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
260 GAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
245497 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
245562 AAAGGCATTGGCATGGTAGAAATATGAAGATGCGCCTACACCCACCTACCACCCTATCGATCCAC
390 AAAGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
245627 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTACTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGC
455 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGC
* * **
245692 TTAGGCATACGGAGTT-ATTCCCAGTCTAA-ATCGAATCAGACCGAGGGTTGTGGCAGCAGGATC
520 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAAAATC
* * * * *
245755 TG-TAGCACACAGAGGGGGAC-CCGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTG
585 -GACAGCACACAGAGGGGGACTCCGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCAGGCTA
* *
245818 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
649 AGCACCCGCACGCTCGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
245883 CGGAGTTCATTCCCAGTGTAAGATCGGACCGGA-TCGAGGGTTG-CGGTGCACATGCTGGGCTT-
714 CGGAGTTCATTCCAAGTGTAAGATCGGACCGGACT-GAGGCTTGTCGGTGCACATGCTGGGCTTG
* *
245945 GGCATGTGCTGGTGCCGCATTTTTTTTC-C-C-GGGCACCATCGTCGGAGCATC-CCGGAGAACC
778 GGCATGTGCTGGTGCCGCA-TTTTTTTCGCTCGGGGCACCATAGCCGGAGCATCGCCGGAGAACC
* **
246006 TGACCGACGGCATTGG-GGTTCC-GCGA-TT-GGGGGGC-GGGGGGTGTGCGCACATG
842 TAACCGACGGCATTGGAGGTTCCGGCGATTTGGGGGGGCAGGGGGGTGTAAGCACATG
*
246059 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
1 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
246124 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
246188 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTT
131 GAAATGGGGACAATTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
*
246253 TTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
196 TTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTG
* *
246318 AAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
261 AAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
**
246383 CGTCTCACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAA
326 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
246447 AATGGCATTGGCACGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
391 AA-GGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
246512 GGCTTGCGCATCCCACCTCTTTGGCCGGCGTAGTACCCACCCGCCTGCTT-GTTTCATCGGTTGG
455 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAATGCCCGCCCGCCCG-TTCGTTTCGTCGGTTGG
*
246576 CTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCGGATC-GAACCGAGGGT
519 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGT
246627 GTGCACACAT
Statistics
Matches: 1338, Mismatches: 106, Indels: 33
0.91 0.07 0.02
Matches are distributed among these distances:
884 6 0.00
885 402 0.30
886 37 0.03
887 100 0.07
889 7 0.01
890 2 0.00
891 4 0.00
892 6 0.00
893 24 0.02
894 18 0.01
895 1 0.00
896 20 0.01
897 27 0.02
898 158 0.12
899 106 0.08
900 52 0.04
901 368 0.28
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACAATTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTG
AAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
AAGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAAAATCG
ACAGCACACAGAGGGGGACTCCGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCAGGCTAAG
CACCCGCACGCTCGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCAAGTGTAAGATCGGACCGGACTGAGGCTTGTCGGTGCACATGCTGGGCTTGGGC
ATGTGCTGGTGCCGCATTTTTTTCGCTCGGGGCACCATAGCCGGAGCATCGCCGGAGAACCTAAC
CGACGGCATTGGAGGTTCCGGCGATTTGGGGGGGCAGGGGGGTGTAAGCACATG
Found at i:247156 original size:580 final size:579
Alignment explanation
Indices: 246044--247193 Score: 1931
Period size: 580 Copynumber: 2.0 Consensus size: 579
246034 GGGGGGCGGG
*
246044 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
246109 ATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
66 ATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
246174 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGT
131 CCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGT
* * *
246239 TTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
196 TTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGC
* *
246304 CAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAA
261 CAAAACTCCTTCTGAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
*
246369 AATAGAAAATGAGTCGTCTCACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
326 AATAGAAAACGAGTCGTCTCACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
*
246434 TACAAGCCAAAAAAATGGCATTGGCACGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
391 TACAAGCCAAAAAAATGGCATTGGCACGATAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * **
246499 CCTATCGATCCATGGCTTGCGCATCCCACCTCTTTGGCCGGCGTAGTACCCACCCGCCTGCTTGT
456 CCTATCGATCCATGGCTCGCGCATCCCACCTCTCTGGCCGGCGTAGTACCCACCCGCCCGCTCAT
* * *
246564 TTCATCGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCGGATCGAACCGA
521 TTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGAACCGA
* *
246623 GGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTC
1 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
246688 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
246753 GCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCATAAAATCCTGTACACTTCGAG
130 GCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAG
*
246818 TTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTTCCAAGTTTGGGG
195 TTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGG
* *
246883 CCAAAACTCCTTCTGAAAAAAATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAA
260 CCAAAACTCCTTCTGAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
** * *
246948 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGATCATTTTATGAAT
325 AAATAGAAAACGAGTCGTCTCACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* * *
247013 TTACAAGCCATAAAAATGGCATTGGCATGATAGAAATATGAAGATGTGCCTAAACCCACCTACGA
390 TTACAAGCCAAAAAAATGGCATTGGCACGATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
247078 CCCTATCGATCCATGGCTCGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCACCTGCCCGCTCA
455 CCCTATCGATCCATGGCTCGCGCATCCCACCTCTCTGGCCGGCGTAGTACCCACCCGCCCGCTCA
* *
247143 TTTCATTGGTTGGCTTAGGCATACAGAGTTCATTCTCAATCTAAGATCGGA
520 TTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGA
247194 CTGGACTGAA
Statistics
Matches: 530, Mismatches: 40, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
579 82 0.15
580 448 0.85
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (579 bp):
GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGT
TTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCTGAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
AATAGAAAACGAGTCGTCTCACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCAAAAAAATGGCATTGGCACGATAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCATGGCTCGCGCATCCCACCTCTCTGGCCGGCGTAGTACCCACCCGCCCGCTCAT
TTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGAACCGA
Found at i:247350 original size:26 final size:26
Alignment explanation
Indices: 247320--247372 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
247310 GTTGACTTAG
247320 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
247346 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
247372 G
1 G
247373 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:250330 original size:15 final size:15
Alignment explanation
Indices: 250312--250341 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
250302 TGGATGTTTA
250312 CGGATCTGATGGTTG
1 CGGATCTGATGGTTG
250327 CGGATCTGATGGTTG
1 CGGATCTGATGGTTG
250342 TGGGTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.40, T:0.33
Consensus pattern (15 bp):
CGGATCTGATGGTTG
Found at i:252531 original size:26 final size:26
Alignment explanation
Indices: 252495--252547 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
252485 CTGGTCTGAT
252495 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
252521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
252547 C
1 C
252548 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:253427 original size:26 final size:26
Alignment explanation
Indices: 253389--253441 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
253379 CCGATCCGAT
*
253389 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
253415 CTTAGACTTGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
253441 C
1 C
253442 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:255395 original size:896 final size:893
Alignment explanation
Indices: 253658--257186 Score: 4651
Period size: 896 Copynumber: 4.0 Consensus size: 893
253648 CCGGTTCGAT
* * * *
253658 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
253723 CGGCCAGAGGGGCAGGATGCACAAGCCAAGGATCAATC-GAGTCCCCCCCTACGTG-T-TGCTGA
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCAGTCAG-GT-CCCCCCTGCATGCTAT-C-GA
* * * * *
253785 TCCTATTGCCACAA-CCT-CGATCCAGTCTGATCTTAGACTAGAAATGAATTCCGTATGCCTAAG
127 TCCTACTACCACAACCCTCCG-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * *
253848 GTAACCGACGAAACGAGCGGGCGGGCGGGCACTATG-TCGGCCAGAGAGGCGGGATGCGTAAGCC
191 CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGGCGAGATGCGTAAGCC
253912 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
255 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
253977 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
320 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * *
254042 CTCGTTTTCTATTTTTCGTGATTTTTGAAACTTTTTACGATTCGGGATTTGTTTAAAGTTTCTTC
385 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTC
* * * * *
254107 AGAAGAAGTTTTGGCCCCTAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCA-AAAAA
450 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
*
254171 CAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTC
515 -AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
254236 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
579 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
254301 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
644 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** *
254366 CATGTGCGCACACCCCCCGTCCCCCCAATTGCCGGAACCCCAATGCTACCGGTCAAGTTCTCTGA
709 CATGTGCGCACACCCCCCG-CCCCCCAATCGCCGAAACCCCAATGCCGCCGGTCAAGTTCTCTGG
* * * *
254431 TGATGCTCTGGCGATGGTGCCCCGGGTGAAAAAAAATGTGGCACTAGCACATGCCCGAGCCCAGC
773 TGATGCTCCGACGATGGTGCCCCGGGTG-AAAAAAATATGGCACCAGCACATG-CCGAGCCCAGC
* * * * *
254496 ATGTGCACCCGCAACCCTCGGTCCGGTCTGATGTTACACTGGGAATGAAGTCCGTATG
836 ATGTGCACCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATAAACTCCGTATG
* * *
254554 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
254619 CGGCCAGAGGGACAGGATGCACAAGCTGGGGATCGGTCAGGT-CCCCCTGCATGCTATCGATCCT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCAGTCAGGTCCCCCCTGCATGCTATCGATCCT
* **
254683 GCTACCGTAACCCTCCGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 ACTACCACAACCCTCCGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
254748 CGACGAAACAAGCGGGTGGGCGGGCACTACGCTAGCCAGAGAGGTGACATGCGCAAGCCGTGGAT
196 CGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGAGATGCGTAAGCCATGGAT
** * *
254813 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTGTATTTCTACCATGCCAATACCATTTTTATG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* *
254878 GCCTGTAAATTCATACAATGGTCCCTTAAGCCATCATGTGAAGTTTCATGGCAAGACGACTCGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
254943 TTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTTAAAATTTTTTTACAAGG
391 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG
* * *
255008 AGTTTTGGCCCCAAACTTGGTATACACGATCCTTGTATTTTTTTTTGGCATGCGCAAAAAAATTC
456 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTC
*
255073 AGCTAAAAACTCGAAGTGTACAGGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTC-GAACA
520 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACA
*
255137 CTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
584 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
255202 GAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGT
649 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * *
255267 GTGCACACCCCCCCGGCCCCCAATTGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATG
714 GCGCACA-CCCCCCGCCCCCCAATCGCCGAAACCCCAATGCCGCCGGTCAAGTTCTCTGGTGATG
* * ** *
255332 CTCCGATGATGGTGGCCCGGGTGAAAAACAATATGAAACCAGCACATGCTCGAGCCTAGCATGTG
778 CTCCGACGATGGTGCCCCGGGTGAAAAA-AATATGGCACCAGCACATGC-CGAGCCCAGCATGTG
* * * * *
255397 CACCCACAACCCTCGGTCTGATCCGATCTTACACTGGGAATCAACTTCGTATT
841 CACCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATAAACTCCGTATG
* * * * *
255450 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACTAGCGCGCGGGCGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
255515 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGCCAGGTTGCCCCCTGCATGCTGTTGATCT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCAGTCAGG-TCCCCCCTGCATGCTATCGATCC
* * * *
255580 TACTACCACAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATAAACTCCATATGCCTAAGCCAA
130 TACTACCACAACCCTCCGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * **
255645 CCGATGAAACGAGCGGATGGGCGGGCACTATGCCGGCCAGAGATTCGAGATGCGTAAGCCATGGA
195 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGAGATGCGTAAGCCATGGA
*
255710 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* * * *
255775 GGCTTGTAAATTCATACGATGGTGCCTTAAGCCTTCATGTGAAGTTTCATGGCAA-AGCGGCTCC
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA-CGACTCG
** *
255839 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTTGGATTTTTTTAAAATTTTCTCAGAA
389 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA
* * *
255904 GGATTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTTTTGTCATGCACAAAAAAATT
454 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* **
255969 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTTGGACA
519 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
256034 CTTTCATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGGGTTCTC
584 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
256099 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGC
649 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
256164 GCGCACAGCCCCCCCAACCCCCCAATCACCGAAACCCCAATGCCGCCGGTCAAGTTTTGCT-GCG
714 GCGCACA--CCCCCC-GCCCCCCAATCGCCGAAACCCCAATGCCGCCGGTCAAGTTCT-CTGGTG
* * * *
256228 ATGCTTCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCTGTGCCCAGCA
775 ATGCTCCGACGATGGTGCCCCGGGTGAAAAAAATAT--GGCACCAGCACATGCC-GAGCCCAGCA
* *
256293 TGTGCACCCACAACCCTCGGTCTGGTCTGATCTTATACTGGGAATAAACTCCATATG
837 TGTGCACCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATAAACTCCGTATG
* *
256350 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
256415 CGACCAGAGGGGCAAGG-TGCATAAGTCGGGGATCGGTCGGGTCCCCCCTGCATGCTACCGATCC
66 CGGCCAGAGGGGC-AGGATGCACAAGCCGGGGATCAGTCAGGTCCCCCCTGCATGCTATCGATCC
* ** * *
256479 TACTACCATAACCCTTGGTCTAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TACTACCACAACCCTCCGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
256544 CTGATGAAACGAGTGGGCGGGCAGACACTACACTGGCCAGAGAGGCGGGATGCGTAATCCATGAA
195 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGAGATGCGTAAGCCATGGA
* *
256609 TCGATAGGGTCGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTAT
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
256674 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* **
256739 TTTCTATTTTTCATGATTTTTGAAA-TATTTTATGGTTTAGGATTTTTTTAAAATTTTTTCAGAA
390 TTTCTATTTTTCATGATTTTTGAAACT-TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA
* * *
256803 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATGCTTGTATTTTTTTTGGCATGCACAAAAGAATT
454 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
256868 CAGCTAAAAACTC-------A-A--A----GTG------T--------TGTCCCCATTTCAGACA
519 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
256905 CTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
584 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
256970 AAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACAAGTACCCATCACACATCATGT
649 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
257035 GCGCATACCCCCCGCCCCCCTAATCGTCGAAACCCCAAT---GCC-GTC--G--ATCAGGT--T-
714 GCGCACACCCCCCGCCCCCC-AATCGCCGAAACCCCAATGCCGCCGGTCAAGTTCTCTGGTGATG
* * * * *
257089 CTCCGACGATGGTGCCCCAGGCGAAAAAAAATACGACACCAGCACATGCCGTAGCCTAGCATGTG
778 CTCCGACGATGGTGCCCCGGGTG-AAAAAAATATGGCACCAGCACATGCCG-AGCCCAGCATGTG
* ** * *
257154 AACCCGTAACCCTTGGTCCGGTCTGATCTTACA
841 CACCCACAACCCTCGGTCTGGTCTGATCTTACA
257187 TGAAATTTTT
Statistics
Matches: 2326, Mismatches: 278, Indels: 97
0.86 0.10 0.04
Matches are distributed among these distances:
856 1 0.00
857 53 0.02
858 21 0.01
859 9 0.00
860 1 0.00
861 2 0.00
863 1 0.00
865 3 0.00
866 3 0.00
868 6 0.00
869 22 0.01
871 137 0.06
879 1 0.00
885 3 0.00
889 1 0.00
891 1 0.00
892 1 0.00
894 20 0.01
895 322 0.14
896 532 0.23
897 226 0.10
898 352 0.15
899 441 0.19
900 164 0.07
901 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCAGTCAGGTCCCCCCTGCATGCTATCGATCCT
ACTACCACAACCCTCCGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGAGATGCGTAAGCCATGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG
AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGCCCCCCAATCGCCGAAACCCCAATGCCGCCGGTCAAGTTCTCTGGTGATGCTC
CGACGATGGTGCCCCGGGTGAAAAAAATATGGCACCAGCACATGCCGAGCCCAGCATGTGCACCC
ACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATAAACTCCGTATG
Found at i:257669 original size:26 final size:26
Alignment explanation
Indices: 257640--257713 Score: 114
Period size: 26 Copynumber: 2.8 Consensus size: 26
257630 CTGATCTTCC
257640 ACTGGGAATGAACTCTGTATGCTTAG
1 ACTGGGAATGAACTCTGTATGCTTAG
* *
257666 ACTGGGAATGAACTCCGAATGCTTAG
1 ACTGGGAATGAACTCTGTATGCTTAG
257692 ACTGGGAATGAACT-TCGTATGC
1 ACTGGGAATGAACTCT-GTATGC
257714 CTAAGTCAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
ACTGGGAATGAACTCTGTATGCTTAG
Found at i:261879 original size:23 final size:23
Alignment explanation
Indices: 261849--261893 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
261839 GAGGTCCTTA
261849 AGGCATTAAGGGCTCCCCTGTGC
1 AGGCATTAAGGGCTCCCCTGTGC
261872 AGGCATTAAGGGCTCCCCTGTG
1 AGGCATTAAGGGCTCCCCTGTG
261894 GAAGCATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (23 bp):
AGGCATTAAGGGCTCCCCTGTGC
Found at i:261900 original size:23 final size:23
Alignment explanation
Indices: 261851--261901 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
261841 GGTCCTTAAG
*
261851 GCATTAAGGGCTCCCCTGTGCAG
1 GCATTAAGGGCTCCCCTGTGCAA
*
261874 GCATTAAGGGCTCCCCTGTGGAA
1 GCATTAAGGGCTCCCCTGTGCAA
261897 GCATT
1 GCATT
261902 CAGCCACCCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (23 bp):
GCATTAAGGGCTCCCCTGTGCAA
Found at i:264294 original size:26 final size:26
Alignment explanation
Indices: 264265--264317 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
264255 CTGGTCCGAT
*
264265 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
264291 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
264317 C
1 C
264318 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:266601 original size:26 final size:26
Alignment explanation
Indices: 266572--266624 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
266562 GTTGACTTAG
*
266572 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
266598 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
266624 G
1 G
266625 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:267033 original size:883 final size:887
Alignment explanation
Indices: 265304--267420 Score: 2787
Period size: 883 Copynumber: 2.4 Consensus size: 887
265294 GGCTTGCACA
*
265304 TGAAAAATACAAAACGAGTCGTCTTGCCATGAAAATTCACATGAAGGCTTAAAGGACCATTGTAC
1 TGAAAAATACAAAACGAGTCGTCTTGCCATGAAAATTCACATGAAGGCTT-AAGGACCATTGTAT
265369 GAATTTACAAGCCATAGAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCT
65 GAATTTACAAGCCATAGAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCT
*
265434 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTATGG-TCGGCGTAGTGCTCGCCCGCCC
130 ACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTATGGCT-GGCGTAG-GCTCGCCCGCCC
* * ** * *
265498 GCTCGTTTCATTAGTTGGCTTATGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAA
193 GCTCGTTTCGTCAGTTGGCTTATGC--AT--A--TCATTCCCAGTCTAAGATCAGACCAGACCAA
* ** *
265563 GGGTTGCAGCAGTTAGATCAGCAGCACGTAGGGGGGGACCCAGTCGATCCCTGGCTTGTGCATCC
252 GGGTTGCAGCAGTTAGATCAGCAGCACGCAGGGGGGGACCCAGTCGATCCCCAGCTTGCGCATCC
* *
265628 AGCCCCTTGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
317 AGCCCCTTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
* * * *
265693 TTCCCAGTCTAGGCATATGGAGTTCATTCCCAATGAAAGATTGATCGAATCGAGGGTTACGGGTG
382 TTCCCAGTCTAAGCATATGGAGTTCATTCCCAATGAAAGATGGACCGAACCGAGGGTTACGGGTG
* ** * *
265758 CATATGTTGGGCTCGGGCATGTGCTAGTGCCACATTTTTTTCGCCCGGGGCACCATCGCCGGAGC
447 CACATACTGGGCTCGAGCATGTGCTAGTGCCACATTTTTTTCGCCCGGGG-ACCATCGCCGAAGC
** * * * *
265823 ATCGTCGGAGAACCTGACCGACGGCATTGGAGTTTTGGCGATTGGAGGGGCGGGGGGGGGGGGGG
511 ATCACCGGAGAACCTGACCGACAGCATTGGAGGTTTGACGATT-GA------GGGGGGCGGGGGG
*
265888 TTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCAT
569 TTGCGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCAT
* *
265953 CAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
634 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGC
* *
266018 CATTAAAATGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
699 CATTAAAATGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * * * *
266083 TTTAGCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGTGGCC
764 TTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCC
*
266148 AAAACTTCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
829 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
* * * *
266207 TGAAAAATAGAAAACTG-GTCGTCTTGCCTTGAAACTACACATGAAGGCTTAAGGCACCATTGTA
1 TGAAAAATACAAAAC-GAGTCGTCTTGCCATGAAAATTCACATGAAGGCTTAAGG-ACCATTGTA
* * * * * *
266271 TGAATTTACCAGCAATAAAAATGGCATTGGCATGGCAAAAATATGATGATGTGCCTAAACCCACC
64 TGAATTTACAAGCCATAGAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
266336 TACCACCCTATCGATCCACGACTTGTGCATCTCGTCTCTCTGGCTGGCGTA-G-T-GCCCGCCTG
129 TACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTATGGCTGGCGTAGGCTCGCCCGCCCG
* * * * *
266398 CTCGTTTCGTCGGTTGGCTTAGGCATATCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGT
194 CTCGTTTCGTCAGTTGGCTTATGCATATCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGC
* * * * * *
266463 GGCAG-TAGGAT-TGCCAGCATGCAGGGGGGGACCC-GGCTGATCCCCAGCTTGCGCATGCTG-C
259 AGCAGTTA-GATCAG-CAGCACGCAGGGGGGGACCCAGTC-GATCCCCAGCTTGCGCATCCAGCC
* * * ** *
266524 CCTCTGGCCGGCTGAGCACCCGTACGTTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTC
321 CCT-TGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
* * * *
266589 CTAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCGGACC-AGACCGAGGGTTGCGGGTGC
385 CCAGTCTAAGCATATGGAGTTCATTCCCAATGAAAGAT-GGACCGA-ACCGAGGGTTACGGGTGC
* * * *
266653 ACATACTGGGCTCGAGCATGTGCTGGTGCCCCATTTTTTTTCTCCTACGGTG-CCATCGCCGAAG
448 ACATACTGGGCTCGAGCATGTGCTAGTGCCACA-TTTTTTTCGCC--CGGGGACCATCGCCGAAG
266717 CATCACCGGAGAACCTGACCGACAGCATTGG-GGTTTGACGA-T-A-GGGGGCGGGGGG-TGCGC
510 CATCACCGGAGAACCTGACCGACAGCATTGGAGGTTTGACGATTGAGGGGGGCGGGGGGTTGCGC
* * *
266777 GCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
575 GCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACC
*
266842 TCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAA
640 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAA
* * ** *
266907 AGTGTGTGAAATGGGGACTCTTTTTTCAAATGGTCGTAAAATCCTGTACACTTTGAGTTTTTAGC
705 AATGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
266972 TGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCCAAAACT
770 TGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCCAAAACT
*** * * *
267037 CCTTCTGAAAAAATTTTAAAAAAATCTTGAATCGTAAAGAGTTTCAAAAATTG
835 CCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
267090 TGAAAAATACAAAACGAGTCGTCTTGCCATGAAAATTCACATGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATACAAAACGAGTCGTCTTGCCATGAAAATTCACATGAAGGCTTAA-GGACCATTGTAT
*
267155 GAATTTACAAGCCATAGAAATGGCATTGGCATGGTAGAAATATGAAAATGTGCCTAAACCCACCT
65 GAATTTACAAGCCATAGAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCT
* **
267220 ACCACCCTATCGATCCAC-AGCTTACGCATCCCGCCTCTATGGCCAGCGTAGTGCTCGCCCGCCC
130 ACCACCCTATCGATCCACGA-CTTGCGCATCCCGCCTCTATGGCTGGCGTAG-GCTCGCCCGCCC
** * *
267284 GCTCGTTTCGTCAGTTGGCTTATGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAA
193 GCTCGTTTCGTCAGTTGGCTTATGC--AT--A--TCATTCCCAGTCTAAGATCAGACCAGACCAA
* * * *
267349 GGGTTGCAGCAGTTGGATCAGCAGCACGTAGGGGGGGACCC-GATCGATCTCC-GACTTGTGCAT
252 GGGTTGCAGCAGTTAGATCAGCAGCACGCAGGGGGGGACCCAG-TCGATCCCCAG-CTTGCGCAT
267412 CCAGCCCCT
315 CCAGCCCCT
267421 CGGTTGGCTT
Statistics
Matches: 1051, Mismatches: 133, Indels: 69
0.84 0.11 0.06
Matches are distributed among these distances:
882 2 0.00
883 447 0.43
884 13 0.01
885 1 0.00
886 1 0.00
887 30 0.03
889 2 0.00
891 2 0.00
892 10 0.01
893 235 0.22
894 61 0.06
895 50 0.05
897 6 0.01
899 28 0.03
900 1 0.00
901 1 0.00
902 4 0.00
903 155 0.15
904 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
TGAAAAATACAAAACGAGTCGTCTTGCCATGAAAATTCACATGAAGGCTTAAGGACCATTGTATG
AATTTACAAGCCATAGAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTATGGCTGGCGTAGGCTCGCCCGCCCGCT
CGTTTCGTCAGTTGGCTTATGCATATCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAG
CAGTTAGATCAGCAGCACGCAGGGGGGGACCCAGTCGATCCCCAGCTTGCGCATCCAGCCCCTTG
GCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
TAAGCATATGGAGTTCATTCCCAATGAAAGATGGACCGAACCGAGGGTTACGGGTGCACATACTG
GGCTCGAGCATGTGCTAGTGCCACATTTTTTTCGCCCGGGGACCATCGCCGAAGCATCACCGGAG
AACCTGACCGACAGCATTGGAGGTTTGACGATTGAGGGGGGCGGGGGGTTGCGCGCACATGATGT
ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAATGTGTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCCAAAACTCCTTCTGAAAA
AATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
Found at i:267627 original size:26 final size:26
Alignment explanation
Indices: 267591--267643 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
267581 GTTGACTTAG
267591 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
267617 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
267643 G
1 G
267644 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:268059 original size:20 final size:20
Alignment explanation
Indices: 268019--268059 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
268009 CATGCCAACA
**
268019 AAAATACAAGGATGATGTCT
1 AAAATACAAGGATGACATCT
268039 AAAATACAAGGATGACATCT
1 AAAATACAAGGATGACATCT
268059 A
1 A
268060 CCAAGTTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.22
Consensus pattern (20 bp):
AAAATACAAGGATGACATCT
Found at i:270156 original size:26 final size:26
Alignment explanation
Indices: 270117--270167 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
270107 TGGGTTGACT
*
270117 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
270143 TAGGCATACAGAGTTGATTCCCAGT
1 TAGGCATACAGAGTTCATTCCCAGT
270168 GTAAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:270408 original size:15 final size:15
Alignment explanation
Indices: 270390--270430 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
270380 ATATTATACG
270390 AAATACAAAAAAAAT
1 AAATACAAAAAAAAT
*
270405 AAATAC-CAAAAAAT
1 AAATACAAAAAAAAT
270419 -AATACAAAAAAA
1 AAATACAAAAAAA
270431 TAGCAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 5 0.22
14 12 0.52
15 6 0.26
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (15 bp):
AAATACAAAAAAAAT
Found at i:270417 original size:14 final size:14
Alignment explanation
Indices: 270390--270432 Score: 61
Period size: 13 Copynumber: 3.1 Consensus size: 14
270380 ATATTATACG
270390 AAATACAAAAAAAAT
1 AAATAC-AAAAAAAT
*
270405 AAATACCAAAAAAT
1 AAATACAAAAAAAT
270419 -AATACAAAAAAAT
1 AAATACAAAAAAAT
270432 A
1 A
270433 GCAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 12 0.48
14 7 0.28
15 6 0.24
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:271832 original size:17 final size:17
Alignment explanation
Indices: 271812--271878 Score: 66
Period size: 17 Copynumber: 4.0 Consensus size: 17
271802 CTAAGTTTTT
271812 AAAACCCCTAAAAATCC
1 AAAACCCCTAAAAATCC
*
271829 AAAATCCCCT-AAAATTC
1 AAAA-CCCCTAAAAATCC
* *
271846 AAAACCTCTTAAAATCC
1 AAAACCCCTAAAAATCC
**
271863 -AAAGTCCTAAAAATCC
1 AAAACCCCTAAAAATCC
271879 TAAAGACAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
16 16 0.39
17 20 0.49
18 5 0.12
ACGTcount: A:0.49, C:0.30, G:0.01, T:0.19
Consensus pattern (17 bp):
AAAACCCCTAAAAATCC
Found at i:284812 original size:26 final size:26
Alignment explanation
Indices: 284776--284828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
284766 CCGGTCTGAT
284776 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
284802 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
284828 C
1 C
284829 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:285236 original size:894 final size:893
Alignment explanation
Indices: 283165--285282 Score: 2948
Period size: 894 Copynumber: 2.4 Consensus size: 893
283155 ACCCTCGGTC
* ** *
283165 CGATCCGATCTTAGACTGGGAATGAACTCCT-TATGCCTAAGCCAACCGACGAAACGAGCGGGTG
1 CGATCCGATCTTACACTAAGAATGAACT-CTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * * ** * *
283229 GGCGGGCACTACGTCGGCAGAGAGGCGGGTTATGCAAGCCATGGATCGATAGGATGGTAGGTGGG
65 GGCAGGCACTACGCCGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
283294 TTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
130 TTTAGGCACATCTTCATATTTATGCCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
283359 GGTCCCTTAAGCCTTCATGTGACGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
195 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * ** **
283424 TGAAACTTTTTACT-GTTCAAGATTTTTTTAAAATTTTTTTAAAAGGAGTTTTCACCCCAAACTT
260 TGAAACTTTTTA-TGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCAAAAACTT
* * * * * *
283488 GGTGGATGTGATCCTTGTATTTTTGTTGGGATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGT
324 AGTAGACGTGAACCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCAAAGTGT
* *
283553 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGT
389 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACAGGCAGC
*
283618 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGG
454 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATAAGTTCTCAAGGTTTGATGAGGGATAGG
* * ** *
283683 GGGCGAATATAAGGGCCAAGTGCTAGCACCCATTGCACATCATGCACGCACACCCCCCGCCCCAC
519 GGGCCAATATAAAGGCCAAGCACCAGCACCCATTGCACATCATG-ACGCACACCCCCCGCCCCAC
* * * * *
283748 CAATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCAATGGTGCCCTGG
583 CAATCACCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGG
* *
283813 GCAAAAAAAAAAATGACACCAGCACATGACTGAGCCCAGCATGTGCACCCACAACCCTCGATCCA
648 GC-AAAAAAAAAATGACACCAACACATGACTAAGCCCAGCATGTGCACCCACAACCCTCGATCCA
*
283878 GTCTGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATACCCAAG
712 GTCTGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATACCCAAG
* * * * *
283943 TCAACCTACGAAACGAGCGTTCAGGCACTCAGTCGGCCAGAGGGGCAAGGTGCACAAGTCGGGGA
777 TCAACCAACGAAACGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCAAGATGCACAAGCCGGGGA
* * * * *
284008 TCGACCGGGTCCCCCTTGCATGCTGTCGATCCTACTACCACAACCCTCGGTT
842 TCGACCGGGTCCCCCTTACATGCTGCCAATCCTACTACCACAACCATCGATT
* **
284060 CGATCCGGTCTTACACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
1 CGATCCGATCTTACACTAAGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * * * **
284125 GCAGGCACTACGCAGGCTAGAGAGGCGGGATGCGTAAGCCGTGGATCAATAGGGTGGCAGGTGAA
66 GCAGGCACTACGC-CGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
284190 TTTAGGTACATCTTCATATTTCTG-CTATGCCAATGCCATTTTTAT-GCTTGTAAATTCATACAA
130 TTTAGGCACATCTTCATATTTATGCCT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
284253 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTCTCATGA-TT
194 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
284317 ATGAAAGTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCAAAAACTT
259 TTGAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCAAAAACTT
*
284382 AGTATACGTGAACCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCAAAGTGT
324 AGTAGACGTGAACCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCAAAGTGT
* *
284447 ACAGGATTTTGTGACCATTTGAAAAACA-TGTCCCCATTTCAGACACTTTAATGGCTACAGGCAG
389 ACAAGATTTTGTGACCATTTGAAAAA-AGTGTCCCCATTTCAAACACTTTAATGGCTACAGGCAG
* *
284511 CAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAG
453 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATAAGTTCTCAAGGTTTGATGAGGGATAG
* *
284576 GGGGCCAATATAAAGGCCAAGCACCAGCACCCATTGCACATCATG-TGCACACACCCCC-TCCC-
518 GGGGCCAATATAAAGGCCAAGCACCAGCACCCATTGCACATCATGACGCACAC-CCCCCGCCCCA
* * * *
284638 CCTATCATCGGAACCCTAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
582 CCAATCACCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCG
* * * * *
284703 GGC-GAAAAAAAATGCAGCACCAACGCATGCCTAAGCCCAGCATGTGCACCCATAACCCTCGGTC
647 GGCAAAAAAAAAATG-A-CACCAACACATGACTAAGCCCAGCATGTGCACCCACAACCCTCGATC
* * * *
284767 CGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
710 CAGTCTGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATACCCA
** * * *
284832 AGTCAACCAACGGGACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-TAGTATGCACAAGCCGG
775 AGTCAACCAACGAAACGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCAAG-ATGCACAAGCCGG
* * * *
284896 GGATTGGCTGGGTCCCCCCTTACATGCTGCCAATCCTACT-CCTGCAACCATCGA-T
839 GGATCGACCGGGT-CCCCCTTACATGCTGCCAATCCTACTACC-ACAACCATCGATT
* * *
284951 CTGGTCTGATCTTACACTAAGAATGAACTCTGTATGCCTTAGCCAACCGACGAAACGAGCGGGCG
1 C-GATCCGATCTTACACTAAGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * * *
285016 GGCAGGCACTATGCCGACCATAGAGGAGGGATGCGCAGGCCGTGGATTGATAGGGTGGTAGGTGG
65 GGCAGGCACTACGCCG-CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
285081 GTTTAGGCACATCTTCATATTTTTGCCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
129 GTTTAGGCACATCTTCATATTTATGCCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
285146 TGGTCCTTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
194 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * **
285211 TTGAAACTTTTTATGGTTTGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
259 TTGAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCAAAAACTT
*
285276 GGTAGAC
324 AGTAGAC
285283 ATTTGGAAAA
Statistics
Matches: 1074, Mismatches: 133, Indels: 33
0.87 0.11 0.03
Matches are distributed among these distances:
889 10 0.01
890 3 0.00
891 226 0.21
892 189 0.18
893 82 0.08
894 338 0.31
895 148 0.14
896 78 0.07
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (893 bp):
CGATCCGATCTTACACTAAGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
GCAGGCACTACGCCGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTATGCCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCAAAAACTTAG
TAGACGTGAACCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCAAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACAGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATAAGTTCTCAAGGTTTGATGAGGGATAGGGG
GCCAATATAAAGGCCAAGCACCAGCACCCATTGCACATCATGACGCACACCCCCCGCCCCACCAA
TCACCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGGGCA
AAAAAAAAATGACACCAACACATGACTAAGCCCAGCATGTGCACCCACAACCCTCGATCCAGTCT
GATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATACCCAAGTCAA
CCAACGAAACGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCAAGATGCACAAGCCGGGGATCGA
CCGGGTCCCCCTTACATGCTGCCAATCCTACTACCACAACCATCGATT
Found at i:285635 original size:25 final size:26
Alignment explanation
Indices: 285598--285649 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
285588 CTGGTCCAAT
285598 CTTACACTAGGAATGAACTCC-TATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
285623 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
285649 C
1 C
285650 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:293716 original size:896 final size:896
Alignment explanation
Indices: 291648--297870 Score: 8476
Period size: 896 Copynumber: 7.0 Consensus size: 896
291638 GTGACACCTT
* * ** * * * *
291648 CGTGCTGTCGATCCTGCTGTCATAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCTG
1 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
* * *
291713 TACGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGAT
66 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
**
291778 GCATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
131 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
* *
291843 AATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATG
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* ** *
291908 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTACGGTTCGAGATTTTTTTAA
261 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
291973 AA-TTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
326 AATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
* * * *
292037 GCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGAGATCATTTCAAAAAAGTGTC
391 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
*
292102 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
456 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
292167 GGTGTGAGTT-TGTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGC
521 GGTGTGAGTTCT-TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * *
292231 ATCGCACATCATGTGCTCACACCCCCCGCCCCCCCAATCGTCGGAACCCTAATGCTGCAGGTCAG
585 ATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGCCAGAACCCTAATGCCGCCGGTCAG
* * *
292296 GTTCTCCAGCGATGCTCCGACGATGGTGCCCCGAGCG-AAAAAAATGCAGCACCAGCACATGCCC
650 GTTCTCCAGTGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCC
* * *
292360 GAGCCCAGCATGTGCACCCGTAACCCTCAGTCTGGTGT-AATCTTACACTAGGAATGAACTCCGT
715 GAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGT-TCGATCTTACACTGGGAATGAACTCCGT
* *
292424 ATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGGTC
779 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTC
* * * * * * * * *
292489 AGCCAGCTAGAGGTGTAGGATGCGCAAGTCAGGGATTGATCGAGTCCCCCCCTG
844 AGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCCCTG
** * * * * * *
292543 TTTGCTGCTGATCCTACTACCGCAACCCTCAGTCTGGTCC-ATCTTAGACTGGGAATTAACTCCG
1 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
* * * * * * *
292607 TATGCCTAAGGCAACCAACAAAATGAGCAGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGAGAT
66 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
* *
292672 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCG
131 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
*
292737 AATGCCATTTTTATGGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * * *
292802 GCAGGACGACTCGTTTTCTATTTTTTACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAA
261 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
** *
292867 AATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTCGCAT
326 AATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
* *
292932 GCACAAAAAAATTCAGCAAAAAACTCGAGGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
391 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
292997 CCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAAGG
456 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
293062 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGAGGCCACTATAAGGGCCAAGTACCAGCACCCA
521 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
293127 TCGCACATCATGTGCGCACACCCACCGCCCCCCCAATCGCCGGAACCCTAATGTCGCCCGTCAGG
586 TCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGCCAGAACCCTAATGCCGCCGGTCAGG
* *
293192 TTCTCCAGTGATGCTCCGACAATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCG
651 TTCTCCAGTGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCG
* * * * *
293257 AGCCCAACTTGTGCACCCATAACCCTTGGTCTGGTTCGATCTTACACTGGGAATGAACTCCGTAC
716 AGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACTCCGTAT
* * * *
293322 GCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGGGCTCTG
781 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
293387 TCGGCCAGAGGGGTAGGATGCGCAAGCGGGGGATCGG-CTGGGTCCCCCCTG
846 CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCCTG
* * * * * * *
293438 CGTGCTGTCAATCCTGCTGCCACAACACTCGGTCTGGTCCAATCTTAGACTGGGAAAGAACTTCG
1 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
* * * * *
293503 TATGCCAAAGCCAACCGACGAAACGAGCAGGCAGGCGGGCACTATGCCGGCCAGAGAGGCGGGAC
66 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
* * *
293568 GCGCAAGCCCTGGATCGCTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCC
131 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
*
293633 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTATG
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * *
293698 GCAAGACAACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
261 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
* * * *
293763 AATTTTTTCAGAAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTACTTTTTTTGGTAT
326 AATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
* *
293828 GCA-AAAAAACATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
391 GCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT
* * *
293892 CCCCATTTTAGACACTTTAATGGCTACAGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
455 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * ** *
293957 GGCTGTGATTTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
520 GGGTGTGA-GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
294022 CATCGCACATCATGTGCGCACAGCCCCGGCCCCCCCCAATCGCCAGAACCCCAATGCCACCGGTC
584 CATCGCACATCATGTGCGCACACCCCCCG-CCCCCCCAATCGCCAGAACCCTAATGCCGCCGGTC
* * * *
294087 AGGTTCT-CTGACGATGCTCCGATGATGGTGCCCCGGGCGAAAAAAAATGCGACACCAGCACATG
648 AGGTTCTCCAG-TGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATG
* * *
294151 CCCGAGCCTAG-ATGTCCACCCGCAACCCTCGGTCTGG-TCTGATCTTACACTGGGAATGAACTC
712 CCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGTTC-GATCTTACACTGGGAATGAACTC
* *
294214 CGTATGCTAAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCG
776 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG
* * *
294279 CTCAGCCAGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTA
841 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTG
* ** * ** * * * * *
294335 CGTGCTACC-AAGCTACTGTTGCAACCCTCGGTCCAGTTCGATCTTAGACTAGGAATGAACTCTG
1 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
* * * * * **
294399 TATGCCTAAGCCAACTGATGAAATGAGCGGGCGGGTGGGCACTACACCGGCCAGAGAGGTAGGAT
66 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
* *
294464 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATGTTTCTGCCATGCC
131 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
* *
294529 AATGCCATTTTTATTGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* *
294594 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAA
261 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
* * * * *
294659 AATTTTTT---TAGAAGTTTTGGCCCCAAACTTGGCAAACGTGATCCTTGTATTTTTTTTGGCAT
326 AATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
* * * * *
294721 CCAAAAAAAAATTCAGCTAAAAGCTCAAAGTGTGCAGGATTTTGTGACCATTTGAAAAAAGTGTC
391 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
294786 CCCATTTGAGACACTATAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGG
456 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
294851 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
521 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
294916 TCGGACATCATGTGCGCACACCACCCCCGCTCCCCCAATCGTCAGAACCCTAATGCCGTCGGTCA
586 TCGCACATCATGTGCGCACA-C-CCCCCGCCCCCCCAATCGCCAGAACCCTAATGCCGCCGGTCA
* * * *
294981 GGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGAGCGAAAAAAAAATACGGCACTAGTACATGC
649 GGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGGGCG-AAAAAAAATGCGGCACCAGCACATGC
* ** *
295046 CCGAGCCCAGCATGTGCACCCGTAACCCTCAGTCTGGCCCGATCTTACACGGGGAATGAACTCCG
713 CCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACTCCG
* * * * *
295111 TAAGCTAAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTT
778 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT
* * * *
295176 CAGCCGGCCA-ATGGGACAGGATGCGCAAGCCGAGGATCGATCGGGTTCCCCCTG
843 CAGCCGGCCAGA-GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTG
* * * * *
295230 CGTGCTACCAATCCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGAGAATGAACTCCG
1 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
* * * * *
295295 TATACCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTATTATGTCGGCCAGAGAGGCGGGAT
66 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
* * * ** * *
295360 GCGTAAGTCGTGGATTGATA-GGTGGTAGGTGGGTTTAGGTGCATCTTCATATTTCTTCCATGAC
131 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
*
295424 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCATGTGAAGTTTCATG
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* *
295489 GCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAA
261 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
* *
295554 CATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATATTTTTTTGGCA
326 AATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT-TTTTTTTGGCA
*
295619 TGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT
390 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT
*
295684 CCCCATTTCATACACTTTAATGGCTACTGGC-GCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
455 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
** * *
295748 GGGTGTGAGTTCTCAAGCTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
520 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * *
295813 ATCACACATCATGTGCGCACACCCCCCG-CCCCCCAATCGCCAGAACCCTATTGTCGTCGGTCAA
585 ATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGCCAGAACCCTAATGCCGCCGGTCAG
* * *
295877 GTTCT-CTGACGATGCTCCGACGATGGTGCCCCGAGCG--AAAAAATGCGGCACCAGCACATGCC
650 GTTCTCCAG-TGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCC
* *
295939 CGAGCCTAGCATGTGCA-CC-TACAACC-C--TC--G---G----T---C------T-AA-TCCG
714 CGAGCCCAGCATGTGCACCCGTA-ACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACTCCG
* * * * *
295979 -AT-CTTACACTGGGAATGAACTCC-TATGCCTAAGTCAACGCATGAAATGAGTGTACGGGCGCT
778 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT
* * * * *
296041 CAGTCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGATTGGGT-CCCCCTA
843 CAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTG
* * * * * * * ** *
296094 CGTGCCGCCGATCCTACTGTCGCAACCGTCAGTCTGGACTGATATTAGACT-GGAATGAACTCCG
1 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
* * * * * *
296158 TATGCCTAAGCCAACCGATGAAACAAGTGGGCGGGCAGGCACTACGTCGGCCTGAGAGGCGGGAT
66 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
* * * *
296223 GCGCAAGCCATGGATCGATAGGGTGGCAAGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCC
131 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
* * *
296288 AATGCAATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATG
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * * * * *
296353 GCAAGACGAATCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATGTTTTGAA
261 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
* * * * *
296418 AATTATTTCAAAAGGAGTTTTGGCCACAAACTTGGTAGACACGATCCTTGTATTTTTGTCGGCAT
326 AATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
296483 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
391 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
296548 CCCATTTTAGACACTTTAAAGGCTACTGGCAGTAAACCTGTAAAATCTAAAATGCTCTTTAAGGG
456 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
296613 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCA
521 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
** * * *
296678 TCG-AGCATCATGTGCGCACACACCCCC-CCGCCCCTTATCACCGGAAGCCC-AATACCGCCGGT
586 TCGCA-CATCATGTGCGCACAC-CCCCCGCC-CCCCCAATCGCCAGAA-CCCTAATGCCGCCGGT
* * * * * * *
296740 CAGGTTCTCAAATGATGCTCCGGCGATAGTGCCCCAGGCAAAAAAAAATGCAGCACCAGCACATG
647 CAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATG
* * * * ** *
296805 CTCGAGCCCAGTATGTGCACCCGCAACCCTTGGTCCAGTTCGATCTTACACTGGGAATGAACTTC
712 CCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACTCC
* *
296870 GTATGCTTAGACTGGGAATTG-ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCG
777 GTATGCTTAGACTGGGAA-TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG
* * * *
296934 CTCAGCTGGCCAGAGGGGCAGGATCCGCAAGCTGGGGATCGGTCGGGTCCCCCATG
841 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTG
* ** * *
296990 CGTGCTGCCGATCTTGCTGCTACAACCCTCGGTCCGATCCATTCTTAGACTGGGAATGAACTCCG
1 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
* * * ** **
297055 TATGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGAGCACTACGCCGGTGAGAGAGGCAAGAT
66 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
* * *
297120 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTACCTTGCC
131 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
*
297185 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCATGTGAAGTTTCATG
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * *
297250 GCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAAACTCTTTACGGTT-TAGGATTTTTTTA
261 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTA
* * * * *
297314 AAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCA
325 AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCA
297379 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGT
390 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT
* * * * *
297443 CCTCATTTGAGACACTTTAATGGCTACTGGCAGTAAATCTGTAAAATCTCAAATGCTCTTCAAGG
455 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
297508 GGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCC
520 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * ** * *
297573 ATTGCACATCAAGTGCGCACACCCCCCCGCCCCCCCAATCATCAGAACCCCAATGCCACCGGTCA
585 ATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCCAATCGCCAGAACCCTAATGCCGCCGGTCA
* ***
297638 GGTTCTCC-GATGATGCTCCGGCGATGGTGCCTTAGGCGAAAAAAAATGCGGCACCAGCACATGC
649 GGTTCTCCAG-TGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGC
* * ** * *
297702 CGGAGCCCAGCATGTGCACCCGTAACCCTTGGTCCAGTCCGATCTTACACTGGGAATGAACTTCG
713 CCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACTCCG
* * * *
297767 TATGCTTAGACTGGGTATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT
778 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT
* * * *
297832 CAGTCGACCAGAGGGGCAGGATGTGCAAGCTGGGGATCG
843 CAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
297871 ATATGTGGTA
Statistics
Matches: 4683, Mismatches: 569, Indels: 151
0.87 0.11 0.03
Matches are distributed among these distances:
863 186 0.04
864 357 0.08
865 79 0.02
866 69 0.01
867 4 0.00
868 42 0.01
869 7 0.00
870 2 0.00
872 2 0.00
874 1 0.00
876 1 0.00
877 1 0.00
879 1 0.00
881 1 0.00
883 1 0.00
884 1 0.00
886 1 0.00
888 2 0.00
890 4 0.00
891 7 0.00
892 114 0.02
893 228 0.05
894 325 0.07
895 876 0.19
896 1440 0.31
897 588 0.13
898 244 0.05
899 99 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
AATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
TCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGCCAGAACCCTAATGCCGCCGGTCAGG
TTCTCCAGTGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCG
AGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACTCCGTAT
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTG
Found at i:294235 original size:26 final size:27
Alignment explanation
Indices: 294199--294251 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
294189 CTGATCTTAC
294199 ACTGGGAATGAACTCCGTATG-CTAAG
1 ACTGGGAATGAACTCCGTATGCCTAAG
294225 ACTGGGAATGAACTCCGTATGCCTAAG
1 ACTGGGAATGAACTCCGTATGCCTAAG
294252 TCAACCCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (27 bp):
ACTGGGAATGAACTCCGTATGCCTAAG
Found at i:296878 original size:26 final size:26
Alignment explanation
Indices: 296849--296901 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
296839 CCAGTTCGAT
*
296849 CTTACACTGGGAA-TGAACTTCGTATG
1 CTTACACTGGGAATTG-ACTCCGTATG
*
296875 CTTAGACTGGGAATTGACTCCGTATG
1 CTTACACTGGGAATTGACTCCGTATG
296901 C
1 C
296902 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATTGACTCCGTATG
Found at i:297781 original size:26 final size:26
Alignment explanation
Indices: 297745--297797 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
297735 CCAGTCCGAT
297745 CTTACACTGGGAATGAACT-TCGTATG
1 CTTACACTGGGAATGAACTCT-GTATG
* *
297771 CTTAGACTGGGTATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
297797 C
1 C
297798 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:298697 original size:723 final size:719
Alignment explanation
Indices: 297033--299313 Score: 3300
Period size: 722 Copynumber: 3.1 Consensus size: 719
297023 CCGATCCATT
* * * * * * * *
297033 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGAGCACT
1 CTTAGACTGGGTATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC--GCTC-
*** * * * *
297098 ACGCCGGTGAGAGAGGCAAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAA
63 A-GCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
**
297163 ATCTTCATATTTCTACCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
127 ATCTTCATATTT-TTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
297228 AGCCCTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAAACTCT
191 AGCCATCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAAACTTT
* * *
297293 TTACGGTT-TAGGATTTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGAAGACGT
256 TTACGGTTCTAGGATTTTTTTAAAA-TTTTTTCGAAGGATTTTTGGCCCCAAACTTGGCAGACAT
297357 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
320 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
* * * *
297422 TGTGACCATTTGAAAAAGTGTCCTCATTTGAGACACTTTAATGGCTACTGGCAGTAAATCTGTAA
385 TGTGACCATTTGAAAAAGTGTCCCCATTTGAGACACTATAATGGCTACTGGCAGCAAACCTGTAA
*
297487 AATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATAT
450 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATAT
** * *
297552 AAGGGCCAAGTACCACCACCCATTGCACATCAAGTGCGCACA-CCCCCCCGCCCCCCCAATCATC
515 -A---CC-AG------CACCCATCACACATCAAGTGC-CAAACCCCCCCCG-CCCCCCAATCGTC
*
297616 AGAACCCCAATGCCACCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCTTAGGCGAAAAA
567 AGAACCCCAATGCCACCGGTCAGGTTCTCCG-TGATGCTCC-GCGATGGTGCCCTAGGCGAAAAA
* * **
297681 AAATGCGGCACCAGCACATGCCGGAGCCCAGCATGTGCACCCGTAACCCTTGGTCCAGTCCGATC
630 AAATGCGGCACCAGCACATGCCGGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATC
297746 TTACACTGGGAATGAACTTCGTATG
695 TTACACTGGGAATGAACTTCGTATG
* *
297771 CTTAGACTGGGTATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGTATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
297836 CGACCAGAGGGGCAGGATGTGCAAGCTGGGGATCGATA-TGTGGTAGGTGGGTTTAGGCACATCT
66 CGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
297900 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
131 TCATATTTTTG-CTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
297965 ATCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCCTTCACGATTTTTGAAACTTTTTAC
195 ATCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAAACTTTTTAC
*
298030 GGTTCTA-GATTTTTTTAAAATTTGTTTCGAAGGAGTTTTGGCCCCAAACTTGGCAGACATGATC
260 GGTTCTAGGATTTTTTTAAAATTT-TTTCGAAGGATTTTTGGCCCCAAACTTGGCAGACATGATC
*
298094 CTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGT
324 CTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
*
298159 GACCATTTGAAAAAGTGTCCCCATTTGAGACACTATAATGGCTACTGGCAGCAAACCTGTAATAT
388 GACCATTTGAAAAAGTGTCCCCATTTGAGACACTATAATGGCTACTGGCAGCAAACCTGTAAAAT
*
298224 CTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATACC
453 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATACC
298289 AGCACCCATCACACATCAAGTGCCCAAACCCCCCCCGCCCCCCAATCGTC-GAAACCCCAATGCC
518 AGCACCCATCACACATCAAGTG-CCAAACCCCCCCCGCCCCCCAATCGTCAG-AACCCCAATGCC
298353 ACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTAGGCG-AAAAAAATGCGGCACCAG
581 ACCGGTCAGGTTCTCC-GTGATGCTCCG-CGATGGTGCCCTAGGCGAAAAAAAATGCGGCACCAG
*
298417 CACATGCCGGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCAATCTTACACTGGGAATG
644 CACATGCCGGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATG
* **
298482 AACTTCATACA
709 AACTTCGTATG
298493 CTTAGACTGGGTATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGTATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
298558 CGACCAGAGGGGCAGGATGCGTAAGCTGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
66 CGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
298623 TCATATTTTTGCTGTGCCAATGCCATTTTGATGGCCTGTAAATTCATAGAATGGTCCCTTAGGCC
131 TCATATTTTTGCT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
298688 ATCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAAACTTTTTAT
195 ATCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAAACTTTTTAC
298753 GGTTC-AGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGCAGACATGATC
260 GGTTCTAGGATTTTTTTAAAATTTTTTC-GAAGGATTTTTGGCCCCAAACTTGGCAGACATGATC
298817 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
324 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
298882 ACCATTTGAAAAAGTGTCCCCATTTGAGACATTGTAATGGCTACTGGCAGCAAACCTGTAAAATC
389 ACCATTTGAAAAAGTGTCCCCATTTGAGACACTATAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
298947 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGG
454 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCC-A-AT----
* ** *
299012 GCCAACTACCAGCACCTATCACACATCAAGTG-CGGACACCCCCCGCCCCCCAATCGTCAGAACC
513 ----A-TACCAGCACCCATCACACATCAAGTGCCAAACCCCCCCCGCCCCCCAATCGTCAGAACC
* *
299076 CTAATGCCACCGGTCAGGTTCTCC--G--G-T----GATGGTGCCCTAGGCGAAAAAAAATTGTG
573 CCAATGCCACCGGTCAGGTTCTCCGTGATGCTCCGCGATGGTGCCCTAGGCGAAAAAAAA-TGCG
* ** * **
299132 GCACCAGCACTTGCTAGAGCCCAGCATGTGCACTCGCAAGACTCGGTCTGGTCCGATCTTACACT
637 GCACCAGCACATGCCGGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACT
*
299197 GGGAATGAACTCCGTATG
702 GGGAATGAACTTCGTATG
* ** * *
299215 CTTAGACTGGGTATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAAAGTTCGGGCGCTCAGT
1 CTTAGACTGGGTATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
299280 CGACCAGAAGGGCAGGATGTGTAAACCGGGGATC
66 CGACCAGAGGGGCAGGATGCGCAAGCCGGGGATC
299314 AGTCGGGTCC
Statistics
Matches: 1417, Mismatches: 99, Indels: 70
0.89 0.06 0.04
Matches are distributed among these distances:
720 16 0.01
721 7 0.00
722 531 0.37
723 294 0.21
724 12 0.01
725 1 0.00
726 1 0.00
728 1 0.00
729 2 0.00
730 2 0.00
731 50 0.04
732 5 0.00
733 231 0.16
734 210 0.15
735 1 0.00
736 3 0.00
738 50 0.04
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (719 bp):
CTTAGACTGGGTATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTTTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCA
TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAAACTTTTTACG
GTTCTAGGATTTTTTTAAAATTTTTTCGAAGGATTTTTGGCCCCAAACTTGGCAGACATGATCCT
TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
CATTTGAAAAAGTGTCCCCATTTGAGACACTATAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATACCAGC
ACCCATCACACATCAAGTGCCAAACCCCCCCCGCCCCCCAATCGTCAGAACCCCAATGCCACCGG
TCAGGTTCTCCGTGATGCTCCGCGATGGTGCCCTAGGCGAAAAAAAATGCGGCACCAGCACATGC
CGGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTTCG
TATG
Found at i:299218 original size:26 final size:26
Alignment explanation
Indices: 299189--299241 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
299179 CTGGTCCGAT
299189 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
299215 CTTAGACTGGGTATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
299241 C
1 C
299242 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:300114 original size:26 final size:26
Alignment explanation
Indices: 300085--300137 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
300075 CCAGTCCAAT
300085 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* * *
300111 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
300137 C
1 C
300138 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:300376 original size:896 final size:884
Alignment explanation
Indices: 298493--300552 Score: 2893
Period size: 896 Copynumber: 2.3 Consensus size: 884
298483 ACTTCATACA
* * * * * *
298493 CTTAGACTGGGTATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTC-A
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCACTA
* * * * *
298556 -GCC-GACCAGAGGGGCAGGATGCGTAAGCTGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 CGCCAG-CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* ** * * *
298619 ATCTTCATATTTTTGCTGTGCCAATGCCATTTTGATGGCCTGTAAATTCATAGAATGGTCCCTTA
130 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
298684 GGCCATCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAAACTTT
195 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * * *
298749 TTATGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGCAGACATG
260 TTACGGTTCAGGATTTTTTAAAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGCAGACATG
298814 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
325 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* *
298879 GTGACCATTTGAAAAAGTGTCCCCATTTGAGACATTGTAATGGCTACTGGCAGCAAACCTGTAAA
390 GTGACCATTTGAAAAAGTGTCCCCATTTCAAACATTGTAATGGCTACTGGCAGCAAACCTGTAAA
*
298944 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATA
455 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATA
* *
299009 AGGGCCAACTACCAGCACCTATCACACATCAAGTGCGGACACCCCCCGCCCCCCAATCGTCAGAA
520 AGGGCCAACTACCAGCACCCATCACACATCAAGTGCGCACACCCCCCGCCCCCCAATCGTCAGAA
* * * **
299074 CCCTAATGCCACCGGTCAGGTTCTCCGGTGATGGTGCCCTAGGCGAAAAAAAATTGTGGCACCAG
585 CCCCAATGCCACCGGTCAAGTTCTCCGGTGATGGTGCCCGAGGCGAAAAAAAATTACGGCACCAG
* * ** *
299139 CACTTGCTAGAGCCCAGCATGTGCACTCGCAAGACTCGGTCTGGTCCGATCTTACACTGGGAATG
650 CACATGCTAGAGCCCAGCATGTGCACTCGCAACACTCGGTCCAGTCCAATCTTACACTGGGAATG
* * * * *
299204 AACTCCGTATGCTTAGACTGGGTATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAAAGTTC
715 AACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGC
* * *
299269 GGGCGCTCAGTCGACCAGAAGGGCAGGATGTGTAAACCGGGGATCAGTCGGGTCCCCCCCTGCGT
780 GGGCGCTCAGTAGACCAGAAGGGCAGGATGTGCAAACCGGGGATCAGTCGGGTCCCCCCCTACGT
* * * *
299334 GCTACCAATCTTGCTGCCACAACCCTCAATCTGGTCCGAT
845 GCTACCAATCCTACTACCACAACCCTCAATCTGATCCGAT
* *
299374 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCAGGCAGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGCACT
* * * *
299439 ACGCCAGCCAAAGAAGTGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCAC
65 ACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
299504 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTAGGGCTTGTAAATTCGTACAATGGTCCCTTA
130 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * *
299569 AGCCTTCATGTGATGTTTCATGTCAAGATGACTCGTTTTCTATTTTTCTTGATTTTTGAAACATT
195 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * *
299634 TTACGGTTCGGGATTTTTTAAAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
260 TTACGGTTCAGGATTTTTTAAAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGCAGACATG
299699 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
325 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
*
299764 GTGACCATTTGAAAAA-TGTGCCCTCATTTCAAACACTT-TAATGGCTACTGGCAGCAAATCTGT
390 GTGACCATTTGAAAAAGTGT-CCC-CATTTCAAACA-TTGTAATGGCTACTGGCAGCAAACCTGT
* *
299827 AAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
452 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAAT
* * * * *
299892 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGTCCCCCAATCGTCG
517 ATAAGGGCCAACTACCAGCACCCATCACACATCAAGTGCGCACACCCCCCGCCCCCCAATCGTCA
***
299957 GAACCCCAATGCCGTTGGTCAAGTTCTCCGACAATGCTCCGACGATGGTGCCCCGA-GCGAAAAA
582 GAACCCCAATGCCACCGGTCAAGTTCTCCG-----G-T-----GATGGTG-CCCGAGGCGAAAAA
* ** * *
300021 AAA-TACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACTCGTGACCCTTGGTCCAGTCCAAT
635 AAATTACGGCACCAGCACATGCTAGAGCCCAGCATGTGCACTCGCAACACTCGGTCCAGTCCAAT
*
300085 CTTACACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCC
700 CTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
300150 ATGAAACGAGCA-TGCGGGTGCTCAGCTAG-CCAGAGGGGCAGGATGTGCAAGCCGGGGATCGGT
765 ACGAAACGA-AAGTGCGGGCGCTCAG-TAGACCAGAAGGGCAGGATGTGCAAACCGGGGATCAGT
** * * * *
300213 CGGGTCCCCCCCTACGTGCTGTCGATCCTACTACCGCAACCCTCGATCTGATCTGAT
828 CGGGTCCCCCCCTACGTGCTACCAATCCTACTACCACAACCCTCAATCTGATCCGAT
*
300270 CTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCAC
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGCAC
*
300334 TACGCCAGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
64 TACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
300399 CATCTTCATATTTCTACCATGGC-ATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
129 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
300463 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTGGAAATTT
194 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
300528 TTTACGGTTCAGGATTTTTCTAAAA
259 TTTACGGTTCAGGATTTTT-TAAAA
300553 TTTTTTTAGA
Statistics
Matches: 1035, Mismatches: 120, Indels: 33
0.87 0.10 0.03
Matches are distributed among these distances:
881 51 0.05
883 3 0.00
884 4 0.00
885 307 0.30
886 179 0.17
887 2 0.00
891 1 0.00
892 1 0.00
895 114 0.11
896 348 0.34
897 21 0.02
898 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (884 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCACTA
CGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
TACGGTTCAGGATTTTTTAAAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGCAGACATGA
TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
TGACCATTTGAAAAAGTGTCCCCATTTCAAACATTGTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAA
GGGCCAACTACCAGCACCCATCACACATCAAGTGCGCACACCCCCCGCCCCCCAATCGTCAGAAC
CCCAATGCCACCGGTCAAGTTCTCCGGTGATGGTGCCCGAGGCGAAAAAAAATTACGGCACCAGC
ACATGCTAGAGCCCAGCATGTGCACTCGCAACACTCGGTCCAGTCCAATCTTACACTGGGAATGA
ACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGCG
GGCGCTCAGTAGACCAGAAGGGCAGGATGTGCAAACCGGGGATCAGTCGGGTCCCCCCCTACGTG
CTACCAATCCTACTACCACAACCCTCAATCTGATCCGAT
Found at i:302720 original size:26 final size:26
Alignment explanation
Indices: 302691--302743 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
302681 CCGGTCCGAT
302691 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
302717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
302743 C
1 C
302744 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:304335 original size:897 final size:896
Alignment explanation
Indices: 301957--305984 Score: 5682
Period size: 898 Copynumber: 4.5 Consensus size: 896
301947 CTTGCTACAA
* *
301957 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
302022 ACGAGCGGGCGGGCCGGCACTACGCCGGGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
66 ACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
** * * *
302087 GTGGTACATTGGTTTAGGCACATCTACATATTTCTGCCATGCCAATGCCATTTTTATGGCTTCTA
131 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
*
302152 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATT
196 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
302217 TTTCACGATTTTTGAAACTTTTTA-AGGTTTGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTT
261 TTTCACGATTTTTGAAACTTTTTACA-GTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
* *
302281 GGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAA
325 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
302346 AACTCGTAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
390 AACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTACCCATTTCAGACACTTTAATG
** *
302411 GCTACTGGCAATAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
455 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTG
* * *
302476 ATGAGAGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
520 ATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
302541 CCCTCCGCCCCCCTAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTCCAGC
585 CCCCCCGCCCCCC-AATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCAGC
* *
302606 GATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
649 GATGGTGCCCTGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
* *
302671 AACCCTCAGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
714 AACCCTCAGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * * *
302736 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAAAGGGGCAGGATA
779 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCAGGATG
* ** * * * *
302801 CGCAAGCC-GCGGATCGATCGGGTCCCCCCTGCATGCTGCTGATCCTACTGCCA
844 CGCAAGCCAG-GGATCGACCGGGTCCCCCCAACATGCTGCCGATCCTTCTACCT
** * ** * *
302854 CAACCCTTGGTCCT-GTCCGATCTTAGACAAGGAATGAACTTCGTATGCCTAAGCTAACCGACGA
1 CAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
302918 AACGAGCGGGCGGGCGGGCACTGCGCCGGCGAGAGAGCCGGGATGCGCAAGCCATGGATAGATAG
65 AACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
*
302983 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTTTTATGGCTTGT
130 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
*
303048 AAATTCATACAATGGTCCCTTAAGCCTTCATGTCAAGTTTCATGGCAAGACGACTCGTTTTCTAT
195 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *
303113 TTTTCACGATTTTTGAAAC-TTTTACAGTTTGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTT
260 TTTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
* * *
303177 GTCCCCAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAA
325 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
303242 AACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTACCCATTTTAGACACTTTAATG
390 AACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTACCCATTTCAGACACTTTAATG
*
303307 GCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTG
455 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTG
* *
303372 ATGAGGGACAAGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
520 ATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
** * * *
303437 CCCCCCGCCCCCCAATCGTCGGAACCCTAATGCCGTCGATCAGGTTCTCCGACGATGCTTCAGCG
585 CCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCAGCG
* * * * *
303502 ATGGTGCCTTGGGCGAAAAAAATTACGGCACCAGCACATGCCTGAGCCTAGCATGTGCGA-CTGC
650 ATGGTGCCCTGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC-ACCCGC
*
303566 AACCCTCAGTCTGGTCCGATCTCACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
714 AACCCTCAGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * * ** *
303631 CCATATGCCTAAGTCAACCCATGAAACGAGTGTG-AGGGCACTCAGTTGGCCAGAGGGGTAGGAT
779 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA-GGCACTCAGCCGGCCAGAGGGGCAGGAT
* *
303695 GCGCAAGCCAGGGATCGACCCGATCCCCCCCAACATGCTGCCGATCCTGTC-ACCT
843 GCGCAAGCCAGGGATCGACCGGGT-CCCCCCAACATGCTGCCGATCCT-TCTACCT
* * **
303750 CAACCCTCAGTCTCGTCTGATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAATTGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * * *
303815 ACAAGCAGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATTCGCAAACCGTGGTTCAATAGG
66 ACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
* * * *
303880 GTGCTACGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGCA
131 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
303945 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
196 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** * *
304010 TTTCACGATTTTAAAAACTTTATACAGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAATTTTG
261 TTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
*
304075 GCCCCAAACTTGGTAGACATGATCCTTGTATTTCTT-TTGGCATGCACAAAAAAATTCAGCTAAA
326 GCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAA
* ** *
304139 AAATCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATG
390 AACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTACCCATTTCAGACACTTTAATG
* * *
304204 GCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGATGTTTG
455 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTG
*
304269 ATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGC-CACCATCGCACATCATGTGCACACA
520 ATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCAC-CCATCGCACATCATGTGCGCACA
* ** * * * *
304333 CCCCCCGGCCCCCCCAATGGCCGGAACCCTAATGTCGCCGATCAGGTTCTCCGGCGATGCTCTAG
584 CCCCCCCG-CCCCCCAATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCAG
* * * * * * * **
304398 TGATGGTTCCCTGGGTGAAAAAAATTACGGCACTAGCACATGCCCGAGCCCAGCATATGCAACTA
648 CGATGGTGCCCTGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCG
* **
304463 CAACCCTCAGTGTGGTCCGATCTTACACAAGGAATGAACT-CAGTATGCTTAGACTGGGAATGAA
713 CAACCCTCAGTCTGGTCCGATCTTACACTGGGAATGAACTCCA-TATGCTTAGACTGGGAATGAA
** * * *
304527 CTGTGTATGCCTAAGTTAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGAA
777 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCAGGA
* * * * * * ** * *
304592 TGCGCAAG-CTGGATATCGGCCGGGTACCCTCCTACGTGCTATC-AGTCCTGCTTACAT
842 TGCGCAAGCCAGG-GATCGACCGGGT-CCCCCCAACATGCTGCCGA-TCCTTC-TACCT
*
304649 -AACCCTCAGTCTGGTCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * **
304713 AC-AACTGGGCGGGCGGGCACTATGCCGGCCAGAGAGGTGGGATGCGCAAATCGTGGATCGATAG
66 ACGAGC-GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
*
304777 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGTTTGT
130 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
*
304842 AAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
195 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
304907 TTTTCATGATTTTCGAAACTTTTTAC-GATTCAGGATTTTTTTAAAAATTTTTTCAGAAGGAGTT
260 TTTTCACGATTTTTGAAACTTTTTACAG-TTCGGGATTTTTTT-AAAATTTTTTCAGAAGGAGTT
* ** *
304971 TTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTTTCTTGCACAAAAAAATTCAGCTA
323 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
305036 AAAACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTACCCATTTCAGACACTTTAA
388 AAAACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTACCCATTTCAGACACTTTAA
* * * * *
305101 TTGCTATTGGCAGCAAACCTGTAGAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
453 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTT
* *
305166 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAC
518 TGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
305231 A-CCCCCCGCCCCACCAATCATCGAAACCCCAATGCCGCCGATCAGGTTCTCTGACGATGCTCCA
583 ACCCCCCCGCCCC-CCAATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCA
** * *
305295 GCGATGGTGCCCTGGGCGAAAAAAAAAATGTGGCACCAGCACATGCCCGACCCCAGCATGTGTAC
647 GCGATGGTGCCCTGGGCG--AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCAC
* * * *
305360 CCGTAACCCTCGATTC-GGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
710 CCGCAACCCTC-AGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
* * * * * * *
305424 GAACTCGGTATGCCTAAGTCAACCTACGAAACAAGCGTGCGGGCATTCAGTCAGCCAGAGGGGCA
774 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCA
* * * * ** * * *
305489 GGATGAGCAAGCTAGGGATCGATCGGGTCCCCCCATGCATGCTGTGGATCCTCCTGCTT
839 GGATGCGCAAGCCAGGGATCGACCGGGTCCCCCCA-ACATGCTGCCGATCCTTCTACCT
* * * * * *
305548 CAACCCTCAGTCTGGTCTAATCTTGGACTGTGAATGAACTCCGTTTGCCTAAGCCAACCAACAAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * ** * *
305613 ACGAGCGGGTGGACGGGCACTACGTCGGCCAAAGAGGTAGAAAGCGCAAGCCGTGGATCGATAGG
66 ACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
305678 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
131 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
*
305743 AATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
196 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** *
305808 TTTCACGATTTTTGAAACTTTTTAC-GTTTCTAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTT
261 TTTCACGATTTTTGAAACTTTTTACAG-TTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
* * ** * *
305872 GGCCCCAAACCTGGGAGACGTGATCCTTCCATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAA
325 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
305937 AACTCGAAGTGTACA-GATTTTGTGACCATTCAAAAAAAGTGTACCCAT
390 AACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTACCCAT
305985 CGTAACCCTC
Statistics
Matches: 2787, Mismatches: 310, Indels: 67
0.88 0.10 0.02
Matches are distributed among these distances:
894 1 0.00
895 236 0.08
896 563 0.20
897 557 0.20
898 614 0.22
899 362 0.13
900 446 0.16
901 8 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (896 bp):
CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTACCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGA
TGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGCCCCCCAATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCAGCGA
TGGTGCCCTGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAA
CCCTCAGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCAGGATGCG
CAAGCCAGGGATCGACCGGGTCCCCCCAACATGCTGCCGATCCTTCTACCT
Found at i:305420 original size:26 final size:26
Alignment explanation
Indices: 305384--305436 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
305374 TCGGTCTGAT
305384 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
305410 CTTAGACTGGGAATGAACTCGGTATG
1 CTTACACTGGGAATGAACTCCGTATG
305436 C
1 C
305437 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:306044 original size:26 final size:26
Alignment explanation
Indices: 306008--306060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
305998 TCGGTCTGAT
*
306008 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
306034 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
306060 C
1 C
306061 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:307653 original size:26 final size:27
Alignment explanation
Indices: 307607--307659 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
307597 CCGATCTTGC
*
307607 ACTGGGAATGGACTCCATATG-CTTAG
1 ACTGGGAATGAACTCCATATGCCTTAG
* *
307633 ACTGGGAATGAACTTCGTATGCCTTAG
1 ACTGGGAATGAACTCCATATGCCTTAG
307660 TCAACCCACG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (27 bp):
ACTGGGAATGAACTCCATATGCCTTAG
Found at i:308526 original size:26 final size:26
Alignment explanation
Indices: 308497--308549 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
308487 CCGGTCTGAT
308497 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
308523 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
308549 C
1 C
308550 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:310316 original size:26 final size:26
Alignment explanation
Indices: 310287--310339 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
310277 CTGGTTCGAT
310287 CTTACACTGGGAATGAAC-TCTGTATG
1 CTTACACTGGGAATGAACTTC-GTATG
*
310313 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
310339 C
1 C
310340 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:310643 original size:894 final size:892
Alignment explanation
Indices: 306238--312986 Score: 8012
Period size: 895 Copynumber: 7.6 Consensus size: 892
306228 ACCAACAAAA
* * * * *
306238 CAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGAGATTTTTTTTAA
1 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
* * * *
306303 ATTTTTTCAAAAGGAGTTTTGGCCCCAAACATT-GTACACGTGATCCTTCTATTTTTGTTGGCAA
66 ATTTTTTCAGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
306367 GCA-TAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
130 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* *
306431 CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
195 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* ** *
306496 GGTGTGAGTTCTTGAGGTTTGATGAAAGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCA
260 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * **
306561 TCGCACATCATGTGCGCACACCCCCCCGCCCCCTGCAATCGTCGGAACCCCAATGCTGCCTTTCA
325 TCGCACATCATGTGCGCACA-CCCCCCGCCCCC--CAATCGCCGGAACCCCAATGCCGCCGATCA
* * * * *
306626 GGATCTCCGACGATGCTCCGACGATAGTGCCTCAGGCGAAAAAAAATGCGGCACTAGCACATGCC
387 GGTTCTCCGGC-ATGCTCCG-CGATGGTGCC-CGGGCG-AAAAAAATGCGGCACCAGCACATGCC
* * * * *
306691 CAAGCCCAGCATGTGCACCCACAACCCTTGGTCCGGTCCGATCTTACACT----A-G------GA
448 CGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTTCGATCTTACACTGGGAATGAACTCCGT
** * * *
306745 ATG---A-AC------T---C-T-GTATGCCTAAGTCAACCCATAAAACAAGCATGCGGGTGCTC
513 ATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
306795 AGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGCCGGG--CCCCCCTGCGTGTTGTCGA
578 AGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCCTACGTGCTGCCGA
* * * ** * * * *
306858 TCCTACTACTACAACCCTCAGT-TCAATCCAATCTTAGATTCGGAATAAACTCCATATGCCTAAG
643 TCCTGCTGCTGCAACCCTCAGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
306922 CCAACCGACGAAACGAGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCA
707 CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCA
306987 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
772 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* * *
307052 TTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCGTGG
837 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * **
307108 CAAGACAACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCTAGATTTTTTTAAA
1 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
* * * *
307173 ATTTTTTCAGAAGGATTTTTGGCCCTAAACATGGTGGACGTGATCCTTGTATTTTTGTTGGCATG
66 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * * * * *
307238 CATAAAACAATTCAGCTAAAAACTTGAAGTGTACAGGCTTTCGTGACTATTTGAAATAAGTGTCC
131 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
307303 CCATTTCAGACACTTTAATGGCTACTAGCAGCAAACATGTAAAATCTCAAACGCTCTTTAAGGGG
196 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
307368 GTGTGAGTTCTCGGGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
261 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
307433 TGCACATCATGTGCGCACACCCCCTCGCCCCCCAATCGCTGGAACCCCAATGCCGCCGGTCAAGT
326 CGCACATCATGTGCGCACACCCCC-CGCCCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGT
* * * * * * * *
307498 GCTCCGGTGATGCTCTAGCGATGGTGCCCTGGACGAAAAAAAATGTGGCACCAACACATGGCCAA
390 TCTCCGG-CATGCTC-CGCGATGGTGCCC-GGGCG-AAAAAAATGCGGCACCAGCACATGCCCGA
* * * * * *
307563 GCCCAGCATGTGCACTCGCAAACCTCGGTCCGGTCCGATCTTGCACTGGGAATGGACTCCATATG
451 GCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTTCGATCTTACACTGGGAATGAACTCCGTATG
* * *
307628 CTTAGACTGGGAATGAACTTCGTATGCCTTAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC
516 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * **
307693 CGACCAGAGGGCCAGGATGCGTAAGCAGGGGATCGACTGGGTCCCCCCCTGTGTGCTGCCGATCC
581 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCCTACGTGCTGCCGATCC
** * *
307758 TGCTGCCACAACCCTC-GATATGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
646 TGCTGCTGCAACCCTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
307822 ATCGACGAAACAAGCGGGCGGGCGAGCACTACGCCGGCCAGAGAAGCGGGATGCGCAAGTTATGG
710 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGG
** **
307887 ATCGATAGGGTGGTAGGTGGGTTTACACACATCTTCATATTTCTAACATGCCAATGCCATTTTTA
775 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
* * *
307952 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGATGTGAAGTTTCGTGA
840 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * * * *
308005 CAAGATGACTCGTTCTCTATTTTTCACGATTTTTCAAACTTTTCACGGTTTGGGATTTTTTTAAA
1 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
*
308070 ATTTTTTCAGAAAGG-GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
66 ATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
308134 GCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGCTTTTGTGACCATTTGAAAAAAGTGTC
130 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
*
308199 CCCATTTCAGACACTTTAATGGCTACTGGC-GCAAACCTGTAAAATCTCAAACGCTCTTTAAGGG
195 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
308263 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG-TAATATAAGGGCCAAGTACCAGCACCCA
260 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
308327 TCGCACATCATGTGCGCACACCCCCCGCCCCCCGCAATCGCCGGAACCCTAATGCCGTC-AGTCA
325 TCGCACATCATGTGCGCACACCCCCCG-CCCCC-CAATCGCCGGAACCCCAATGCCGCCGA-TCA
* * * *
308391 GGTTCTTCGGCGATGCTCCGAGATGGTGCCCTGGGCAAAAAAAAATGCGGCACCAGCATATGCCC
387 GGTTCTCCGGC-ATGCTCCGCGATGGTGCCC-GGGC-GAAAAAAATGCGGCACCAGCACATGCCC
* * *
308456 GAGCCCAGCATGTGCACCCACAACCCTTGGTCCGG-TCTGATCTTACACTAGGAATGAACTCCGT
449 GAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTTC-GATCTTACACTGGGAATGAACTCCGT
* *
308520 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTC
513 ATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * * *
308585 AGCTGGCCAGAGGGGTAGGATGCGCAAGCTGGGGATTGACCAGGTCCCCCCCTGCGTGCTACTGA
578 AGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCCTACGTGCTGCCGA
* ** *
308650 TCTTGCTGCTGCAACCCTCAGT-TCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
643 TCCTGCTGCTGCAACCCTCAGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * ****
308714 CCAACCGATGAAA-GAAGCGGGCGGGCGAGCACTACGTCGGCCAAAGATTTAGGATGCGCAAGCC
707 CCAACCGACGAAACG-AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
*
308778 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTTGCCAATGCCATT
771 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* * * *
308843 TTTATGGCATGT--A---ATACAACGGTCCTTTAAGCCTTCATGTGAACTTTCATGG
836 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * ** *
308895 CAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA-TTTTTACGGTTCAAGATTTTTTAAAA
1 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
* * * * *
308959 ATTTTTTTAGAAGGATTTTTGGCCCCAAACATGGTAGTCGTGATCCTTGTATTTTTTTTTGGCAT
66 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCAT
*
309024 GCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
130 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
309089 CCTATTTTAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
195 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
309154 GGTGTGAGTTCTTGTGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
260 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
309219 TCGCACATCATGTGTGCACACCCCCACCTCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTC
325 TCGCACATCATGTGCGCACA--CCC-CC-CGCCCCCCAATCGCCGGAACCCCAATGCCGCCGATC
* * * * * * * *
309284 ACCG-TCTTCGACGATGCTCTGGCAATGGTGCCTCGAGCGAAAAAAAAATGCAGCACCAACACAT
386 A-GGTTCTCCGGC-ATGCTC-CGCGATGGTGCC-CGGGCG--AAAAAAATGCGGCACCAGCACAT
* * * * * * * *
309348 GTCCAAGCCCAGCATGAGCACCTGTAACCCTCGGTCCGATCCGATCTTACACTGGGAATAAAC-C
445 GCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTTCGATCTTACACTGGGAATGAACTC
*
309412 CTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGATCGTGCGGGC
510 C-GTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
** * * * *
309477 GCTCAGCCTACCAGAGGGACAGGATGCGCAAGCTGGGGATTGGCTGGG-CCCCCCCTACGTGCTG
574 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCCTACGTGCTG
* * *
309541 TCGAT-CTGACTACCGCAACCCTC-GATGC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATG
639 CCGATCCTG-CTGCTGCAACCCTCAG-T-CTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * *
309603 CCTAAGCCAACCGATGAAACGAGCGTGCGGGCGGGCACTACACCGACCAGAGAGGCGGGATGCGC
701 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGC
* ** * *
309668 ATGCCGCGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCCATTCCAATG
766 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATG
309733 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
831 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* **
309795 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTCGGGATTTTTTTCTA
1 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
* * * * *
309860 ATTTTTTCAAAAGGAGTTTTAGCCCCATACTTGGTAGACGTGATCCTTGTATTTTTTTTCAGCAT
66 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCAT
* * * *
309925 GGACAAAAAAATTCAACTAAAAATTCGAAGTGTACAGGATTTTGTGACCATTTCAAAAAAGTGTC
130 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
309990 CCCATTTCAAAGAATTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAA-GG
195 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
310054 GGTGTGAGTTCTTGAGGTTTGATGTA-GGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCC
260 GGTGTGAGTTCTCGAGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * *
310118 ATTGCACATTATGTGCGCACACCCCCCGCCCCCCTAACCGCCGAAACCCTAATGTCGCCGATCAG
324 ATCGCACATCATGTGCGCACACCCCCCGCCCCCC-AATCGCCGGAACCCCAATGCCGCCGATCAG
* * * * *
310183 GTTCTCCGGCATGCTCCAGTGATGGTGCACCAGGCGAAAAAAATACGGTACCAGCACATGCTCGA
388 GTTCTCCGGCATGCTCC-GCGATGGTGC-CCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGA
* * *
310248 GCCCAACATGTGCACCCGCAACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACTCTGTATG
451 GCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTTCGATCTTACACTGGGAATGAACTCCGTATG
* * *
310313 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCATCCCACGAAACGAGCGTGCGGGTGCTCAGT
516 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
310378 CGGCTAGAGGGGCAGGATGCACAAGCCGGGGATCGGTTGGGTCCCCCCCTCCGTGCTACCGATCC
581 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCCTACGTGCTGCCGATCC
* * * * * * *
310443 TACTACTGTAACCCTCGGTCTGGTCTAATCTTAGATTGGGAATGAACTCCGTTTGCCTAAGCCAA
646 TGCTGCTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * *
310508 CCGACGAAACGAGAAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGGCATGGA
711 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGA
310573 TCGATAGGGTGGTAGGTGGGTTT-GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
776 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
*
310637 GGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCATGTGAAGTTTCATGG
841 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
310689 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
1 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
* * * * * *
310754 ATTTTTTCAGAAAGAGTTTTGGGCTCACACTTGGTAGACATGATCCTTGTATTTTTGTTGGCTTG
66 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
310819 CACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
131 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
*
310884 CCATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
196 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * ** *
310949 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAATTAGTAGCACGCAT
261 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
311014 CGCACATCAAGTGCGCACACCCCCCGCCCCCTAATCGTCAGAAACCCAATGCTGCC-AGTCAGGT
326 CGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGCCGA-TCAGGT
* * *
311078 TCTCTGATG-ATGCTCCGACGATGGTGTCCCGGGCGAAAAAAAATGAGGCACCAGAACATGCCCG
390 TCTCCG--GCATGCTCCG-CGATGGTG-CCCGGGCG-AAAAAAATGCGGCACCAGCACATGCCCG
* * * * *
311142 AGCTCGGCATGTGCACCCACAACCCTCTGTCCGG-TCTGATCTTACATTGGGAATGAACTCCGTA
450 AGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTTC-GATCTTACACTGGGAATGAACTCCGTA
311206 TGCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
514 TGCTTAGACT-GG---G-A------ATG---A-AC------T----T-CGTATGCCTAAGTCAAC
* * *
311271 CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGTGCAAGCCGGGGATCGGT
553 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGC
* * ** * * * * * * *
311336 CGGGTCTCCCCCTATGACCTGCTGATCCTGCTGCTGCAACCCACAGTCCGATCTAATCTTAAAGT
618 CGGGTCCCCCCCTACGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCTGGTCCAATCTTAGACT
* * * * * * * *
311401 AGGAATGAACTCCGTGTGCCGAAGCCAACCAACGAAATGAGCGAGAGGGCGGGCACTACGTCGGC
683 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGC
* *
311466 CAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
748 CAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* ** * **
311531 ATTTCTACCCCGCCAATGCCATTTTTATGGCTTGTAAATTCAAACGGTGGTCCCTTAAGCCTTCA
813 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
311596 TGTGAAGTTTCATGG
878 TGTGAAGTTTCATGG
* * * * * * *
311611 CAAGATGACTTGTTTTCTGTTTTTCATGA-TTTCGAAACTTTTTACGGTTGGGGAATTTTTTAAA
1 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
* * *
311675 ATTTTTTCAGAAGGAGTTTTGGCCCAAAATTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
66 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
311740 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
131 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
311805 GCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGAG
196 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
311870 ATGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
261 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * ** * ** *
311935 CGCATATCATGTGCGCACA-------CCCCCTAATCATCGGAACCCTAATGTTGTC-AGTCAGGT
326 CGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGCCGA-TCAGGT
* * * **
311992 TCTCCGACGATGCTTCAGCGATGGTCCCCCGATTTTC-AAAAAAATGCGGCACCAGCACATGCCC
390 TCTCCGGC-ATGC-TCCGCGATGGT-GCCCG---GGCGAAAAAAATGCGGCACCAGCACATGCCC
* * * * *
312056 GAGCCCAGCATGTGCACCTGTAACCCTCGATCCGGTTTGATCTTACACTGGGAATGAACTCCATA
449 GAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTTCGATCTTACACTGGGAATGAACTCCGTA
* * *
312121 TGCTTAGATTGGGAACGAACTCCGTATGCC----T-----------A--AGC---C--G-G-T--
514 TGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
312160 ------CAGAGGGGCAGGATGCGTAAGTCGAGGATCAGTCGGGTCCCCCCTTACGTGCTACCGAT
579 GCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCCTACGTGCTGCCGAT
*** *** * *
312219 CCTGCTGCCATAACCCTCAGTCTGGTTTGATCTTATACTGGGAATGAACTTCGTATGCCTAAGCC
644 CCTGCTGCTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * *
312284 AACAGACAAAACGAGCGGGCGGACGAGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGTCGTG
709 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATG
* * *
312349 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCCCATGCCATTTTA
774 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* *
312414 ATGGCTTGTAAATTCAAACAATGGTCCCTTAACCCTTCATGTGAAGTTTCATGG
839 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * * * * *
312468 CAAGACGACTCGTCTTCTATTTTTGACGATTTTTG-AACTTTTTTCAGTTAGGGATTTTTTTTAA
1 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
*
312532 ATTTTTCCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATG
66 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * * * *
312596 CACAAAAAAATTTAGCTACAAAGTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAATGTCC
131 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
312661 CCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGTGG
196 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
312726 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCGAT
261 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * * * * ** *
312791 CACACATCATGGGTGCACACCCCTCACCCCACAATCGTCGGAACCCCAATACCGTAGGTCAGGTT
326 CGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTT
* * * * * * *
312856 CTCCGGTGATGCTCCGACAATGGTGTCCCGGGCAAAAAAAAAATGAGGGACCGGCACATGCCTGA
391 CTCCGG-CATGCTCCG-CGATGGTG-CCCGGGC--GAAAAAAATGCGGCACCAGCACATGCCCGA
** * * * *
312921 GCCCAGCATGTGCACCATCAACCTTCGATCTGGTTTGATCTTACACTGGGAATGAACTCCGTATG
451 GCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTTCGATCTTACACTGGGAATGAACTCCGTATG
312986 C
516 C
312987 CTAAGCCAAT
Statistics
Matches: 5075, Mismatches: 661, Indels: 293
0.84 0.11 0.05
Matches are distributed among these distances:
856 205 0.04
857 358 0.07
858 4 0.00
860 1 0.00
862 3 0.00
863 133 0.03
865 1 0.00
866 1 0.00
867 1 0.00
868 1 0.00
869 119 0.02
870 121 0.02
871 198 0.04
872 3 0.00
873 1 0.00
874 2 0.00
880 3 0.00
883 1 0.00
884 2 0.00
885 1 0.00
888 4 0.00
889 70 0.01
890 169 0.03
891 66 0.01
892 47 0.01
893 150 0.03
894 535 0.11
895 955 0.19
896 312 0.06
897 469 0.09
898 8 0.00
899 1 0.00
900 162 0.03
901 185 0.04
904 2 0.00
906 3 0.00
909 1 0.00
910 3 0.00
911 1 0.00
914 54 0.01
915 90 0.02
916 2 0.00
917 1 0.00
920 1 0.00
921 514 0.10
922 111 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTT
CTCCGGCATGCTCCGCGATGGTGCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
GCATGTGCACCCGCAACCCTCGGTCCGGTTCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
ACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
AGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCCTACGTGCTGCCGATCCTGCTG
CTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
Found at i:311211 original size:26 final size:26
Alignment explanation
Indices: 311191--311260 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
311181 TCTTACATTG
311191 GGAATGAACTCCGTATGCTTAGACTA
1 GGAATGAACTCCGTATGCTTAGACTA
311217 GGAATGAACTCCGTATGCTTAGACTA
1 GGAATGAACTCCGTATGCTTAGACTA
311243 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
311261 CTAAGTCAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACTA
Found at i:313608 original size:710 final size:709
Alignment explanation
Indices: 312239--313611 Score: 1999
Period size: 710 Copynumber: 1.9 Consensus size: 709
312229 TAACCCTCAG
* * **
312239 TCTGGTTTGATCTTATACTGGGAATGAACTTCGTATGCCTAAGCCAACAGACAAAACGAGCGGGC
1 TCTGGTTTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACAAAACGAGCGAAC
* * * * *
312304 GGACGAGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTG
66 AGACGAGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
* *
312369 GGTTTAGGCACATCTTCATATTTCTTCCATGCCCATGCCATTTTAATGGCTTGTAAATTCAAACA
131 GGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTAATGGCTTGTAAATTCAAACA
* *
312434 ATGGTCCCTTAACCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTCTTCTATTTTTGACGATT
196 ATGGTCCCTTAACCCTTCATGCGAAGTTTCATGGCAAGACGACTCGTCTTCTATTTTTCACGATT
* * * * *
312499 TTTGAACTTTTTTCAGTTAGGGATTTTTTTTAAATTTTTCCAGAAGGAGTTTTGGCCCCAAACTT
261 TTTAAACTTTTTACAGTTAGAGATTTTTTTTAAATTTTTCCAGAAGGAGATTTGGCCCCAAACCT
* * * *
312564 GGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATTTAGCTACAAAGTCGAAGTGTA
326 GGTAGACGTGATCCTTGTATTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
312629 CAAGATTTTGTCACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCA
391 CAAGATTTTGTCACCATTTGAAAAAAATGTCCCCATTCCAAACACTTTAATGGCTACTAGCAGCA
* *
312694 AACCTATAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
456 AACCTATAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * ** *
312759 GGCCAATATAAGGGCCAAGTACCAGCATCGATCACACATCATGGGTGCACACCCCTCACCCCACA
521 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGGGCACACACCCCCCACCCCACA
* * *
312824 ATCGTCGGAACCCCAATACCGTAGGTCAGGTTCTCCGGTGATGCTCCGACAATGGTGTCCCGGGC
586 ATCGTCGGAACCCCAATACCGTAGATCAGGTTCTCCGGCGATGCTCCGACAATGGTGTCCCGAGC
312889 AAAAAAAAAATGAGGGACCGGCACATGCCTGAGCCCAGCATGTGCACCATCAACCTTCGA
651 -AAAAAAAAATGAGGGACCGGCACATGCCTGAGCCCAGCATGTGCACCATCAACCTTCGA
**
312949 TCTGGTTTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAATC-GATGAAACGAGCGAA
1 TCTGGTTTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAA-CAGACAAAACGAGCGAA
* *
313013 CAG-CTGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATATGGTGGTAGG
65 CAGAC-GAGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
*
313077 TGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAA
129 TGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTAATGGCTTGTAAATTCAAA
* * *
313142 CAATGGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
194 CAATGGTCCCTTAACCCTTCATGCGAAGTTTCATGGCAAGACGACTCGTCTTCTATTTTTCACGA
* * * **
313207 TTTTTAAAACTTTTTACGGTTCGAGA-TTTTTTTAGAATTTTTTCAGAAGGAGATTTGGCCCTGA
259 TTTTT-AAACTTTTTACAGTTAGAGATTTTTTTTA-AATTTTTCCAGAAGGAGATTTGGCCCCAA
* *
313271 ACCTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAACTCTAA
322 ACCTGGTAGACGTGATCCTTGTA-TTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * *
313336 GTGTACATGA-TTTGTGACCATATTGAAAAAAGTGTCCCCATTACCAGACACTTCT-ATGGCTAC
386 GTGTACAAGATTTTGTCACCAT-TTGAAAAAAATGTCCCCATT-CCAAACACTT-TAATGGCTAC
* * *
313399 TGGCAGCAAACCTAT-AATTATCAAATGCTCTTTAAAGGGGGTGT-AGTTCTTGAGGTTTGATGA
448 TAGCAGCAAACCTATAAAATATCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
313462 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCC
512 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGGGCACACACCCCC
* ** * * *
313527 CGCCTCC-CAATCGTCGGAACCCCAATGTCGTTGATCAGGTTCTCCGGCGATGCTCTGACGATGG
577 CACC-CCACAATCGTCGGAACCCCAATACCGTAGATCAGGTTCTCCGGCGATGCTCCGACAATGG
*
313591 TG-CCTCGAGCGAAAAAAAATG
641 TGTCC-CGAGCAAAAAAAAATG
313612 CTGCACCAAT
Statistics
Matches: 588, Mismatches: 64, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
709 1 0.00
710 246 0.42
711 85 0.14
712 214 0.36
713 41 0.07
714 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (709 bp):
TCTGGTTTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACAAAACGAGCGAAC
AGACGAGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTAATGGCTTGTAAATTCAAACA
ATGGTCCCTTAACCCTTCATGCGAAGTTTCATGGCAAGACGACTCGTCTTCTATTTTTCACGATT
TTTAAACTTTTTACAGTTAGAGATTTTTTTTAAATTTTTCCAGAAGGAGATTTGGCCCCAAACCT
GGTAGACGTGATCCTTGTATTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTCACCATTTGAAAAAAATGTCCCCATTCCAAACACTTTAATGGCTACTAGCAGCA
AACCTATAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGGGCACACACCCCCCACCCCACA
ATCGTCGGAACCCCAATACCGTAGATCAGGTTCTCCGGCGATGCTCCGACAATGGTGTCCCGAGC
AAAAAAAAATGAGGGACCGGCACATGCCTGAGCCCAGCATGTGCACCATCAACCTTCGA
Found at i:313700 original size:26 final size:26
Alignment explanation
Indices: 313671--313723 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
313661 CCGGTCCGGT
313671 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
** *
313697 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
313723 C
1 C
313724 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:314979 original size:893 final size:894
Alignment explanation
Indices: 312934--322155 Score: 11021
Period size: 892 Copynumber: 10.4 Consensus size: 894
312924 CAGCATGTGC
* * * * *
312934 ACCATCAACCTTCGATCTGGTTTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAATCG
1 ACCA-CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* ** * *
312999 ATGAAACGAGCGAAC-AGCTGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATC
65 ACGAAACGAGCGGGCGGGC-GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* *
313063 GATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGG
129 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
* * *
313128 CTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCAAGATGACTCGTTT
194 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
*
313193 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-GAGATTTTTTTAGAATTTTTTCAGAAGG
259 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAG-GATTTTTTTA-AAATTTTTCAGAAGG
* ** * * *
313257 AGATTTGGCCCTGAACCTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCA
322 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
313322 GCTAAAAACTCTAAGTGTACATGA-TTTGTGACCATATTGAAAAAAGTGTCCCCATTACCAGACA
387 GCTAAAAACTCAAAGTGTACAGGATTTTGTGACCAT-TTGAAAAAAGTGTCCCCATT-TCAGACA
* * *
313386 CTTCT-ATGGCTACTGGCAGCAAACCTAT-AATTATCAAATGCTCTTTAAAGGGGGTGT-AGTTC
450 CTT-TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTC
*
313448 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
513 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * ** *
313513 GTGCACACACCCCCC-GCCTCCCAATCGTCGGAACCCCAATGTCGTTGATCAGGTTCTCCGGCGA
578 GTGCGCACACCCCCCTGCC-CCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
* * * * * ** * **
313577 TGCTCTGACGATGGTGCCTCGAGCGAAAAAAAATGCTGCACCAATATATATCCGAGCCCAGCATG
642 TGCTCCGACGATGGTGCCCCGGGCG-AAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
313642 TGCACCTGTAACCCTCGGTCCGGTCCGGTCTTACACTAGGAATGAACTCCGTATGCTTAGGCTGG
706 TGCACCCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
313707 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAACCGTACGGGCGCTCAACCGACTAGAGG
771 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGG
* * * *
313772 GGCAGGATGCACAAG-TCAGGGATCGGCCAGGT-CCCCCCTGCATGCTGTCGATCTTGCT
836 GGCAGGATGCACAAGCT-GGGGATCGGCCGGGTCCCCCCCTGCGTGCTGTCGATCCTGCT
** * * * *
313830 ACCACAACCCTTAGTCTAGT-TCAATCTTCGACAT-GGAATGAACTCCGTATACCTAAGCCAACC
1 ACCACAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
313893 GACAAAACGAGCGGGCGAGCGGGCACTACGTCGGCCAGAGAGGCGGG-TGCGTAAGCCATGGATC
64 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
*
313957 GATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
129 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
*
314022 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGCTTCATGGCAAGACGACTCGTTT
194 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
*** * * * *
314087 TCTATTTTTCATTTTTTTTGAAACTTTTTACGGTTCAAGATTTTTTTATAATTTTCTCAGAAAGA
259 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTT-TCAGAAGGA
* * * *
314152 GTTTTAGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGACATGCTCAAAAAAATTCAG
323 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
314217 CTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTT
388 CTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * *
314282 TGATGGCTACTGGCAACAAATCTAG-AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAA
453 TAATGGCTACTGGCAGCAAACCT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * * **
314346 GGTTTGATGAGGGATAGGGGGCCAATAGAAGGGACAAGTACCAGCATCCACCGCACATCATGTAA
517 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** * * * * * *
314411 GCACA-CCCCCTGCCCCTAATTGTTGGAACCCCAATGTCGTCGGTCAGGTTCTCTGACGATGATT
582 GCACACCCCCCTGCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
* * * *
314475 CGACGATGGTGCCCCAGGCGAAAAAAATACGACAGCAGCACATGCCCGAGCCCAGCATGTCCACC
647 CGACGATGGTGCCCCGGGCGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
* * * * * *
314540 CGTAACCATCAGTCCGATCCAATCTTAC-CATGGGAATGAACTTCATATGCTTAGACTGGGAATG
712 CGCAACCCTCGGTCCGATCCGATCTTACAC-TGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * *
314604 AACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAG
776 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAG
* * * * *
314669 GATGCGC-AGCTGGGGATCGGTCGGGTCCCCCCCTGCATGCTATCGATCTTGCT
841 GATGCACAAGCTGGGGATCGGCCGGGTCCCCCCCTGCGTGCTGTCGATCCTGCT
*
314722 ACCACAACCCTCGGTCTGGACTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 ACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * * *
314787 AGAAATGAGCGGACGGGCGGGTACTACACCGGCCAGAGAGGCAGGATGCGGAAGCCATGGATCGA
66 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
** ** *
314852 TAGGGTGGTAGGTTTGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATTTTTGTGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
*
314917 TGTAAATTCATACAATGATCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
*
314982 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGCAGT
261 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAA-TTTTTCAGAAGGAGT
* * * * *
315047 TTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTCTTGGCATGCATAAAAGAATTCAGCT
325 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
315112 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
390 AAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
** * * * ** *
315177 ATGGCTACTGATAGCAAACCTGTAAAATTTGAGATGCTCTTTAAGGGGGCATGAGTTCTCAAGGT
455 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
315242 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCT
520 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
315307 CACCCCCCCGCCCCTCAATCACCGGAACCCCATTGCCGTCGGTCAGGTTCT-C--C---G----G
585 CACCCCCCTGCCCC-CAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG
* *
315362 -CGATGGTGCCCTGGGCGAAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCC
649 ACGATGGTGCCCCGGGCG-AAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
* * *
315426 GCAAACCTCGGTCC-AGTCCAATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
713 GCAACCCTCGGTCCGA-TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
315490 ACTCTGTATGCCTAAGTCAACACACAAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCAGG
777 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGG
* * * * * *
315555 ATGCGCAAGCCGGGGATCGACTGGGTCCCCCCCTGCGTGCTGCCAATCCTGCT
842 ATGCACAAGCTGGGGATCGGCCGGGTCCCCCCCTGCGTGCTGTCGATCCTGCT
** * ** * *
315608 ACCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGT
1 ACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
** ** * * * * *
315673 CGAAACGAGCGGGTAGGTAGGCACTACACCGACCAGAGAGGTGGGATGCACAAGCCGTGGATTGA
66 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* *
315738 TAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCCATTCCAATGCCATTTTTATGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
315803 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** *
315868 TATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTCAAAAGGAGT
261 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAA-TTTTTCAGAAGGAGT
* * * *
315933 TTTGGCCCGAAAATTAGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
325 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
315998 AAAAACTCAAAGTGTACAGGATTTTGTGTCCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTA
390 AAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
316063 GTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
455 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
316128 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCATGTGCGCA
520 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * *
316193 TACCCCCCTCCCCTCCAATTGTCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATGCTCCG
585 CACCCCCCTGCCC-CCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG
* * * * * * ** * * **
316258 GCGATGGAGCACC-AG-G-AAAAAATGCGGCACCAGCACATGACCGAAACTAGTATGTGCACCAT
649 ACGATGGTGCCCCGGGCGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCG
* *
316320 CAACCCTCGGTCCAATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAAC
714 CAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
316385 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAACCGGCCAGAGGGGCATGAT
779 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGAT
* * * * *
316450 GCACAAGC-------CGG--GGATACCCCCCTGCATGCTGCCAATCCTGCT
844 GCACAAGCTGGGGATCGGCCGGGTCCCCCCCTGCGTGCTGTCGATCCTGCT
* * * * *
316492 ACCACATCCCTTGGTTTGGT-TCGATCTTAGACTGGGGAATCAACTCGCGTATTCCCTAAGCCAA
1 ACCACAACCCTCGGTCTGGTCT-GATCTTAGACT-GGGAATGAACTC-CGTA-TGCCTAAGCCAA
* * * ** * * *
316556 CCGATGTAAACGAACACGGCAGGATGGGCAGTACGTCCGCCCAGAGAGACGGGAATGCGCAAGCC
62 CCGACG-AAACGAGC-GGGC-GGGCGGGCACTACG-CCGGCCAGAGAGGCGGG-ATGCGCAAG-C
* * *
316621 CATGGATTGATAGGGGTGGTAGCG-GTGGTGTAGGCACATCTTCCATAATTTCTGCACTCGAATG
121 CGTGGATCGATA-GGGTGGTAG-GTG-GGTTTAGGCACATCTT-CAT-ATTTCTG--C-C--ATG
* * *
316685 -C-ATGGCCATTTTTTGTGGGCTTGTAAGAGTTCATACCACGGT-CCTTAAGCCTTCATGTGAAG
176 CCAAT-GCCA-TTTTTAT-GGCTTGTAA-A-TTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
* * * *
316747 TTTCGTGGCAAGACGACCGCCGTTTTCTATTTTTCACGATTTTAGAAAACTTTTTAGCGGTTCGG
236 TTTCATGGCAAGACGA-C-TCGTTTTCTATTTTTCACGATTTT-TAAAACTTTTTA-CGGTTCAG
* *
316812 GAATTTTTTAAAAAACTTTTTCAGAAGGACGTTTTGGCCCCAAACTTGGTAGACGTAGATGCTTG
297 G-ATTTTTT-TAAAA-TTTTTCAGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGT-GATCCTTG
* * *
316877 TATTTTTGTTGGCATGCACTAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
357 TATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACC
* * * *
316942 ATTTGAAAAGAGTGTCCCCATTTCAAACACTTTAATGGCCACTGGCAGCAAACCTGTTAAATCTC
421 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * *
317007 AGATGCCCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGC
486 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
317071 CAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCATGCTCCCCAATCGCCGGAACCCC
551 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGC-CCCCAATCGCCGGAACCCC
** ** * * **
317135 AATGGTGCCGAACAGG---T-------T-CTCCGACGATGGTGCCCCGGGCAAAAAAAAAATAGC
615 AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAATACGGC
* * * * * * *
317189 ACCAACACATGCCTGAGCCCAGCCTGTGCACCCACAACCCTCGATCTGATCGGATCTTACACTGG
680 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACACTGG
* * *
317254 GAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAG
745 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * * * *
317319 CGTGCGGGCGTTCAGCCGGCTAGAGGGGTAGGATGCGCAAGCCGGAGATCGGTCGAGTCCCCCCC
810 CGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATCGGCCGGGTCCCCCCC
*
317384 TGTGTGCTGTCGATCCTGCT
875 TGCGTGCTGTCGATCCTGCT
** * ** * * *
317404 GTCTCAACCCTC-GTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACTGA
1 ACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
317468 CGAAAAGAGCGGGCGGGCGGGCACTACGTCGACCAGAAAGGCGGGATGCGCAAGCAGTGGATCGA
66 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* * * * *
317533 TAGGGTGGCAGGTAGGTTCAGGCACATCTTCATATTTTTGCCATGGCAATGCCATTTTTATGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
* * * * *
317598 TGTAAATTAATGCAACGGTCCCTTAAGCCTTCATCTGAAGTTTCATGGCAAGACAACTCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * *
317663 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGATT
261 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAA-TTTTTCAGAAGGAGT
* * * * *
317727 TTTTGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCTTGCACAAAAACATTTAGCT
325 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
317792 AAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
390 AAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
317857 ATGGCGACTGGCAACAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGT
455 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
317922 TTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCA
520 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * *
317987 CACCCCCCCTGCCCCCCCAATCGCCGGAACTCCAATGCCACCAGTCAAGTTCTGCGGCGATGCTC
585 CA-CCCCCCTG--CCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
* * * * *
318052 CGGCGATGGTACCCCGGGCAAAAAAAAATGCGGCACCAGCACAT-CCCTGAGGCCAGCATGTAG-
647 CGACGATGGTGCCCCGGGC-GAAAAAAATACGGCACCAGCACATGCCC-GAGCCCAGCATGT-GC
* * * *
318115 ACCCACAA--------CC-AT-C-A--GT-C-C--GG--T--A-T--G-AT-CTTACATTGGGAA
709 ACCCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
318154 TGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCAGGTGCTCAACCGTCCAGA---G-
774 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC
* * * *
318215 A-G--G--C-A-----GGATCGGTCGGGTCCCCCTCTGTGTGCTG-CTGATCCTACT
839 AGGATGCACAAGCTGGGGATCGGCCGGGTCCCCCCCTGCGTGCTGTC-GATCCTGCT
** * ** ** *
318260 ACTGCAACCCCCATTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGA
1 ACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
318325 CGAAACGAGCAGGCGGGTGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
66 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* *
318390 TAAGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
*
318455 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
318520 TATTTTTCATGATTTTTGAAACTTTTTATGGTTCTGGATTTTTTTAAAATTTTTTTCGGAAGGAG
261 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAA--TTTTTCAGAAGGAG
* * * * *
318585 TTTTGGCCCCATAGC-TAGTAGATGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAG
324 TTTTGGCCCCA-AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * *
318649 CTAAAAACCTCGAAGTGTACAAGATTTTCTGACCATTTGGAAAAAGTGTCCCCATTTCAGACACT
388 CTAAAAA-CTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
318714 TTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
452 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * * *
318779 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGACAAGTCCCAGCACCCATCACGCATCATGTGC
517 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
318844 ACACA-CCCCCTGCCCCCCAATCGTCGGAACCCCAATGCCGCCGTTCAGGTTCTCCAGTGATGCT
582 GCACACCCCCCTG-CCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
* * * * ** * *
318908 CCGACGATGGAGCCCTGCGCAAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATTTGCA
646 CCGACGATGGTGCCCCGGGC-GAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
* *
318973 CTCGCAACCCTCGGTCC-AGTCCGATCTTACACTGGGAATAAACTCCGTATGCTTAGACTGGGAA
710 CCCGCAACCCTCGGTCCGA-TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* ** ** * *
319037 TGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGTTTATGGGCACTCAACTGGCCAGAGGGGC
774 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC
* * * * *
319102 AGGATGCACAAG-TTGGGATCGGCTGGGT-CCCCCATGCATGGTGTCGATCCTGCT
839 AGGATGCACAAGCTGGGGATCGGCCGGGTCCCCCCCTGCGTGCTGTCGATCCTGCT
* ** *
319156 ACCACAATCCTCGGTCCCGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 ACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * * ** *
319221 CGAAACGAACGGGTGGACGGGCATTGCGCCGGCCAAAGAGACGGGATAAGTAAGCCGTGGATCGA
66 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* *
319286 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGACT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
* * *
319351 TTTAAAGTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * ** *
319416 TATTTTTCATGAATTTTAAAACTTTTTACGGTTGGGGATTTTTTTAAAATTCTTTTAGAAGGAGT
261 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATT-TTTCAGAAGGAGT
* ** * * * *
319481 TTTGGCCCCACACTTTATTAGATGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAGAATTCAGC
325 TTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
319546 TAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTT
389 TAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
319611 AATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGG
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
319676 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTGCCAGCACCCATCGCACATCATGTGCGC
519 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
319741 ACACGCCCCCCGGCCCCCCAATCGCCGGATCCCCAATGTCGCCGGTCAGGTTCTCCGGTGATGCT
584 ACA--CCCCCCTG-CCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
* * * * * * **
319806 -CTAGCGATGGTGCCCTGGGCGAAAAAAATGCGGCACCAGCAGATGCCTGAGCCTAGTTTGTGCA
646 CCGA-CGATGGTGCCCCGGGCGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
* * *
319870 CCCGCAACCCTCGGTCCGGTCCGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTAGGAAT
710 CCCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
319935 GAACTCCGTATGCCTGAGTCAACTCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCA
775 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCA
* * * * * ** * *
320000 GGATGCGCAAGCTAGGGATTGGCCAGGT-CCCACCTGCGTGCTACCAATCCTACT
840 GGATGCACAAGCTGGGGATCGGCCGGGTCCCCCCCTGCGTGCTGTCGATCCTGCT
* * * * * *
320054 GCCTCAACCCTCGGTCTAGTTTGATCTTAGACTGGGAATGATCTCTGTATGCCTAAGCCAACCGA
1 ACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *** *
320119 CGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGATAAATGGGATGAGCAAGCCGTGGATCGA
66 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* * * *
320184 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCTTTCCAATGCCATTTATATGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
* *
320249 TGTAAATTCATAGAATGGTCCCTTAAGACTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * *
320314 TATTTTTCACGATTTTTAAAAATTTTTACGGTTCAAGATTTTTTTTAAATTTTTCCAAAAGGAGT
261 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTT-CAGAAGGAGT
* *
320379 TTTGGCCCCACACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
325 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
320444 AAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTA
390 AAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
320509 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
455 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
320574 TTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCA
520 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * ** *
320639 CACCCCCC-G-CCCCAATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATCCTTTGG
585 CACCCCCCTGCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA
* * * * *
320702 CGATGGTGCCCCGGGCAAAAAAAATATGGCACCAGAACATGCCCGAGCCTAGCATGTGCACCCAC
650 CGATGGTGCCCCGGGCGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
** * *
320767 AACCCTCGGTCCGATTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
715 AACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
320832 CCGTATGGCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGGCAGGATG
780 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* * * * ** *
320897 CACAAGCCGAGGATCGGCCGGG-ACCCCCTTGCGTGCTACCAATCCTGCT
845 CACAAGCTGGGGATCGGCCGGGTCCCCCCCTGCGTGCTGTCGATCCTGCT
* ** * ** *
320946 GCTGCAACTCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCATCCGA
1 ACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
** ** *
321011 TTAAACGAGCGGGCGGGCGGGCACTACGTTGGCCAGAGAGGCGGGAAGCGCAAGCCGTGGATCGA
66 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* *
321076 TAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
* * * *
321141 TGTAAAGTCATACATTGGTCCCTTATGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
*
321206 TATTTTTCACGATTTTCT-AAACTTTTTA-----CA-G-----------A----T-----GGATT
261 TATTTTTCACGATTTT-TAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTCAGAAGGAGT
*
321244 TTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
325 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
321309 AAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTA
390 AAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
321374 ATGGCAACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGCT-TGAGTTCTCGAGG
455 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-TGTGAGTTCTCGAGG
* *
321438 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGC
519 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
** * * *
321503 ACATCCCCCCACCCCCCAATCGCCGGAACCCCAATGTCGCTGGACAGGTTCTCCGGCGATGCTCC
584 ACA-CCCCCCTGCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC
* * * *
321568 GGCGATGGTGCCCCGAGC-AAAAAAA-AAGTAGCACCAGCATATGCCCGAGCCCAGCATGTGCAC
648 GACGATGGTGCCCCGGGCGAAAAAAATACG--GCACCAGCACATGCCCGAGCCCAGCATGTGCAC
* * *** * *
321631 CCGTAACCCTCGATTTAATCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATG
711 CCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
** * ** * * * *
321696 AACTTTGTATGCTTAAGTCAACCCATAAAATGAGAGTACGGGCGCTCAACCGACCAGAGGGGCAG
776 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAG
* * ** * *
321761 GATGCACAAACGGGGGATCAACCGGGT-CCCCCCAGTGTGCTGTCGATCCTGCT
841 GATGCACAAGCTGGGGATCGGCCGGGTCCCCCCCTGCGTGCTGTCGATCCTGCT
* ** * * * * *
321814 GCTGCAACCCTCGGTCTAGTCTGATCTAAGACTGGGAAAGAACTCTGCATGCCTAAGCCAACCGA
1 ACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * *** * * *
321879 TGAAACGATCAGGCGGGCAGGCACCACGCCGGTTTGAGAGACGGGATGCGTAAGCCGTGGATTGA
66 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* *
321944 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGTCATGCCAATGCCATTTTTATGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
*
322009 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCCTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
322074 TATTTTTCACGATTTTTTAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTCCAGAAGGAGT
261 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTT-CAGAAGGAGT
322139 TTTGGCCCCAAACTTGG
325 TTTGGCCCCAAACTTGG
322156 CACACCCCCG
Statistics
Matches: 7171, Mismatches: 949, Indels: 413
0.84 0.11 0.05
Matches are distributed among these distances:
855 1 0.00
856 42 0.01
857 354 0.05
858 19 0.00
859 71 0.01
860 177 0.02
861 1 0.00
862 1 0.00
864 1 0.00
865 255 0.04
866 11 0.00
867 10 0.00
868 498 0.07
870 1 0.00
871 64 0.01
872 3 0.00
873 3 0.00
874 3 0.00
875 2 0.00
876 2 0.00
878 2 0.00
879 1 0.00
880 2 0.00
881 149 0.02
882 73 0.01
883 85 0.01
884 92 0.01
885 203 0.03
886 615 0.09
887 28 0.00
888 21 0.00
889 28 0.00
890 21 0.00
891 64 0.01
892 794 0.11
893 711 0.10
894 410 0.06
895 367 0.05
896 380 0.05
897 468 0.07
898 397 0.06
899 4 0.00
900 33 0.00
901 15 0.00
902 18 0.00
903 172 0.02
904 49 0.01
905 23 0.00
906 26 0.00
907 17 0.00
908 23 0.00
909 10 0.00
910 30 0.00
911 70 0.01
912 104 0.01
913 147 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTCAGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCTGCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
GATGGTGCCCCGGGCGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCA
ACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGC
ACAAGCTGGGGATCGGCCGGGTCCCCCCCTGCGTGCTGTCGATCCTGCT
Found at i:315484 original size:26 final size:26
Alignment explanation
Indices: 315448--315500 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
315438 CCAGTCCAAT
315448 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
315474 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
315500 C
1 C
315501 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:316370 original size:26 final size:26
Alignment explanation
Indices: 316341--316393 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
316331 CCAATCCGAT
*
316341 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
*
316367 CTTAGACTGAGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
316393 C
1 C
316394 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCGTATG
Found at i:317273 original size:26 final size:26
Alignment explanation
Indices: 317244--317296 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
317234 CTGATCGGAT
*
317244 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
317270 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
317296 C
1 C
317297 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:319027 original size:26 final size:26
Alignment explanation
Indices: 318998--319050 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
318988 CCAGTCCGAT
318998 CTTACACTGGGAATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
* *
319024 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
319050 C
1 C
319051 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:319924 original size:26 final size:26
Alignment explanation
Indices: 319895--319947 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
319885 CCGGTCCGAT
319895 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
319921 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
319947 C
1 C
319948 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:320816 original size:26 final size:26
Alignment explanation
Indices: 320787--320838 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
320777 CCGATTTGAT
320787 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
320813 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
320839 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:322900 original size:655 final size:652
Alignment explanation
Indices: 321571--322810 Score: 1696
Period size: 655 Copynumber: 1.9 Consensus size: 652
321561 ATGCTCCGGC
* * * *
321571 GATGGTGCCCCGAGC-AAAAAAAA-AGTAGCACCAGCATATGCCCGAGCCCAGCATGTGCACCCG
1 GATGATGCACCGAGCGAAAAAAAATAG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCG
* *
321634 TAACCCTCGATTTAATCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
65 CAACCCTCGATCTAATCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
** * * * *
321699 TTTGTATGCTTAAGTCAACCCATAAAATGAGAGTACGGGCGCTCAACCGACCAGAGGGGCAGGAT
130 TCCGTATCCCTAAGTCAACCCACAAAACGAGAGTACGGGCGCTCAACCGACCAGAGGGGCAGGAT
* * * * *
321764 GCACAAACGGGGGATCAACCGGGTCCCCCCAGTGTGCTGTCGATCCTGCTGCTGCAACCCTCGGT
195 GCACAAACGGGGGATCAACCGGGTCCCCCCACTGTGCTATCGATCCTACTACTGCAACCCTCAGT
** * * *
321829 CTAGTCTGATCTAAGACTGGGAAAGAACTCTGCATGCCTAAGCCAACCGATGAAACGATCAGGCG
260 CTAGTCCAATCTAAGACTGGGAAAGAACTCCGCATGCCTAAGCCAACCGACGAAACGAGCAGGCG
**** ** *
321894 GGCAGGCACCACGCCGGTTTGAGAGACGGGATGCGTAAGCCGTGGATTGATAGGGTGGTAGGTGG
325 GGCAGGCACCACGCCGACCAGAGAGACAAGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGG
* *
321959 GTTTAGGCACATCTTCATATTGCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
390 GTTTAGGCACATCTTCATATTGCTATCATGCCAATGCCATTTTTATGGCTTGTAAATTAATACAA
322024 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACGATTT
455 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACGATTT
*
322089 TTTAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTCCAGAAGGAGTTTTGGCCCCAAACTT
520 TTAAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTCCAGAAGGAGTTTTGGCCCCAAACTT
* * * **** ** *** *
322154 GGCACACCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAAGTTCTTCGATGATGCT
585 GGCACA--CCCGGCCCCCCAATCGTCGCAACACAAAAAAAGTCCCTCAAAAACTTCGAAGATGCT
* *
322219 CTGGT
648 CAGAT
* * *
322224 GATGGTGCCCCGAGCGAAAAAAAATAGGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGC
1 GATGATGCACCGAGCGAAAAAAAATAGGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
**
322289 AACCCTCGATCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
66 AACCCTCGATCTAATCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * * * *
322354 CCGTATCCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGACCAGAGGGGCAGGATG
131 CCGTATCCCTAAGTCAACCCACAAAACGAGAGTACGGGCGCTCAACCGACCAGAGGGGCAGGATG
* * * * *
322419 CA-GAACTTGGGGATCGATCGGGT-CCCCCACTGCATGTTATCGATCCTACTACTGCAACCCTCA
196 CACAAAC-GGGGGATCAACCGGGTCCCCCCACTG--TGCTATCGATCCTACTACTGCAACCCTCA
* * * * * * *
322482 GTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGACGAAACGAGCGGG
258 GTCTAGTCCAATCTAAGACTGGGAAAGAACTCCGCATGCCTAAGCCAACCGACGAAACGAGCAGG
* * *
322547 CGGGCAGGCACTACGTCGACCAGAGAGGCAAGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGT
323 CGGGCAGGCACCACGCCGACCAGAGAGACAAGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGT
*
322612 GGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATTTTTATGGCTTGTAAATTAATAC
388 GGGTTTAGGCACATCTTCATATTGCTATCATGCCAATGCCATTTTTATGGCTTGTAAATTAATAC
* * *
322677 GATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
453 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACGAT
* *
322742 TTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
518 TTTTAAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTCCAGAAGGAGTTTTGGCCCCAAAC
322807 TTGG
583 TTGG
322811 TAGATGGGAT
Statistics
Matches: 523, Mismatches: 59, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
653 26 0.05
654 173 0.33
655 324 0.62
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (652 bp):
GATGATGCACCGAGCGAAAAAAAATAGGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
AACCCTCGATCTAATCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
CCGTATCCCTAAGTCAACCCACAAAACGAGAGTACGGGCGCTCAACCGACCAGAGGGGCAGGATG
CACAAACGGGGGATCAACCGGGTCCCCCCACTGTGCTATCGATCCTACTACTGCAACCCTCAGTC
TAGTCCAATCTAAGACTGGGAAAGAACTCCGCATGCCTAAGCCAACCGACGAAACGAGCAGGCGG
GCAGGCACCACGCCGACCAGAGAGACAAGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTGCTATCATGCCAATGCCATTTTTATGGCTTGTAAATTAATACAAT
GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACGATTTT
TAAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTCCAGAAGGAGTTTTGGCCCCAAACTTG
GCACACCCGGCCCCCCAATCGTCGCAACACAAAAAAAGTCCCTCAAAAACTTCGAAGATGCTCAG
AT
Found at i:323247 original size:26 final size:26
Alignment explanation
Indices: 323196--323248 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
323186 CTGGTTCGAT
*
323196 CTTACACTGGGAATGAACTTCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
323222 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
323248 C
1 C
323249 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:323565 original size:25 final size:25
Alignment explanation
Indices: 323537--323589 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
323527 TGTGCCAATG
323537 ACATTTTTATGGCTTGTAAATTCAT
1 ACATTTTTATGGCTTGTAAATTCAT
323562 ACATTTTTATGGCTTGTAAATTCAT
1 ACATTTTTATGGCTTGTAAATTCAT
323587 ACA
1 ACA
323590 ATGGTCCCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.45
Consensus pattern (25 bp):
ACATTTTTATGGCTTGTAAATTCAT
Found at i:325487 original size:886 final size:889
Alignment explanation
Indices: 322217--326639 Score: 5406
Period size: 887 Copynumber: 4.9 Consensus size: 889
322207 TTCGATGATG
* * *
322217 CTCTGGTGATGGTGCCCCGAGCGAAAAAAAATAGGGCACCAGCACATGCCCGAGCCCAGCATGTG
1 CTCTGGTGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTG
* *
322282 CACCTGCAACCCTCGATCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGA
66 CACCCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGA
* * *
322347 ATGAACTCCGTATCCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGACCAGAGGGG
131 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * * **
322412 CAGGATGCAG-AA-CTTGGGGATCGA-TCGGGTCCCCCACTGCATGTTATCGATCCTACTACTGC
196 CAGGATGC-GCAAGC-CGGGGATCGACT-GGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCAC
* ** *
322474 AACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGACGAAA
258 AACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * ** *
322539 CGAGCGGGCGGGCAGGCACTACGTCGACCAGAGAGGCAAGATGCGCAAGCCGTGGATTGATAGGG
323 CGAGCGGACGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
*
322604 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATTTTTATGGCTTGTAA
388 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAA
* *
322669 ATTAATACGATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
453 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
*
322734 TTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
518 TTCATGATTTTTAAAACTTTTTATGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* * * * * *
322799 CCCCAAACTTGGTAGATGGGATCCTTGTATTTTTTTTTGCAAGCACAAAAAAATTCACCTAAAAA
583 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
322864 CTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAAATACTTTAATGGC
648 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
322929 TGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
713 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
322994 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCTCACATCATGTGCGCACACCC
778 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
*
323059 CCCGCC--CCCCCAATCGCCAGAACCCCTAATGCCGCCGGTCAGGTT
843 CCCCCCGTCCCCCAATCGCCAGAACCCCTAATGCCGCCGGTCAGGTT
*** * *
323104 CTCCAATGATGGTGCCCCGGGCGACAAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTG
1 CTCTGGTGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTG
* *
323169 CACCCACAACCCTCGGTCTGGT-TCGATCTTACACTGGGAATGAACTTCATATGCTTAGACTGGG
66 CACCCGCAACCCTCGGTCTGGTCT-GATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGG
* * * *
323233 AATGAACTCCGTATGCCTAAGTCAACCTACAAAACAAGCGTACGGGCGCTCAGCCGGCCAGAGGG
130 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * *
323298 GCTGGATGCACAAGCCGAGGATCG-GTCGGGTCCCCCTCT--ATGAGCTACCAATCTTGCTGCCA
195 GCAGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCAT--GCTACCGATCTTGCTGCCA
** * **
323360 CAACTATCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
257 CAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
323425 ACGAGCGGACGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
322 ACGAGCGGACGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
323490 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTGTGCCAATGACATTTTTATGGCTTGTA
387 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-----CC-ATG-C----------C-----
* *
323555 AATTCATACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTA
430 AATGC---CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* *
323620 ATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTT-T--TT---G-------
492 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTCAGGATTTTTT
* *
323671 ------------A-AAGGAGTTTTGGCACCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGG
557 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
323723 CATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
622 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
323788 GTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
687 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
323853 GGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
752 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * * *
323918 CCATCGGACATTATGTGCACACACACCCCTCCCGGCCCCCCAATCGCCAGAACCCCCAATGTCGC
817 CCATCGCACATCATGTGCGCACAC-CCCC-CCCCGTCCCCCAATCGCCAGAACCCCTAATGCCGC
* *
323983 CAGTTAGGTTCT
880 CGGTCAGG-T-T
* ** *
323995 CCGACGATGCTTCGGTGATGGTGCCTCGGGCGAAAAAAAATGTGGCACCAGCACATGCCAGAGCC
1 ----C--T-C-T-GGTGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCTGAGCC
* * * * *
324060 CAACATGTGCACCCACAAGCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCATATGCTT
57 CAGCATGTGCACCCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTT
* * * *
324125 AGTCTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACCAGCGTGCGGGCGCTCAACCGG
122 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * ** *
324190 CCAGAGGGGTAGGATGCGTAAGCTGGGGAT-AAGCTGGGTCCCCCCCTGTGTGCTACTGATCTTG
187 CCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA-CTGGGTCCCCCTCTGCATGCTACCGATCTTG
**
324254 CTATCACAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
251 CTGCCACAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
324318 CGATGAAACGAGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
315 CGACGAAACGAGCGGACGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * ****
324383 CGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTTTGTTGTGCCAATGCCATTTTTATG
380 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATG
* * *
324448 GCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCATGTGATGTTTCATGGCAAGACTACTCGTT
445 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
324513 TTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTC-GAGATTTTTTTAAAATTTTTTCAGAAG
510 TTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTCAG-GATTTTTTTAAAATTTTTTCAGAAG
* * * *
324577 GA-TTCTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGTATGCACAAAACAATT
574 GAGTT-TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
324641 CAGCTAAAAACTCGAAGTGTACAGGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACT
638 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
324706 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
703 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
324771 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
768 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * * * *
324836 GCGCACACCCCCTGCC-TCCACCAATCGTCGGAACCCCTAATACCACCGGTCAGGTT
833 GCGCACACCCCCCCCCGTCCCCCAATCGCCAGAACCCCTAATGCCGCCGGTCAGGTT
* * *
324892 CTCTGGCGATGGTGCCCCGGGCGAAAAAAAATACGACACCAACACATGCCTGAG-CCAGCATGTG
1 CTCTGGTGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTG
* * * * * * *
324956 CACCCGTAACCCTCGGTCCGATCTGATCTTACACTAGAAATTAACTCCATATGCATAGACTGGGA
66 CACCCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGA
* * * * *
325021 ATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAACCGACCAGAGGGG
131 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * *
325086 CAGGATGCGCAAGTCGGGGAACGACTGGGTCCCCCTCTGCATGCTGCCGATCCTGTTGCCACAAC
196 CAGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCACAAC
* ** *
325151 CCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT-CCTTAAGCTAACTAACGAAATG
261 CCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC-TAAGCCAACCGACGAAACG
* ** * * * *
325215 AG-AGATAGGCAGGCACTATGCCGACCAGAGAGGCGGGATGCACAAGCCATGGATCGATAGGGTG
325 AGCGGACGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
325279 GTAGGTGGGTTTAGGCACATCTTCATATTTTTACCCTGCCAATGCCTTTTTTATGGCTTGTAAAT
390 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
325344 TCATACAATGATCCCTTAAGCCTT-AGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
455 TCATACAATGGTCCCTTAAGCCTTCA-TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
325408 TCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGC
519 TCATGATTTTTAAAACTTTTTATGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
* ** * *
325473 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGTGTGTACAAAAAAATTCAGCTAAAAAA
584 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
325538 TCGAAGTGTACATGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCT
649 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
325603 ACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT--GTTCTCAAGGTTTGAAG
714 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
325666 AGGGATAGGGGGCCAACATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCC
779 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* *
325731 TCCCCCCGTCCCCCCAATCGCC-GAAAACCCTAATGCCGCTGGTCAGGTT
843 -CCCCCCGT-CCCCCAATCGCCAG-AACCCCTAATGCCGCCGGTCAGGTT
* * * * * **
325780 CTCCGGCAATGCTCAGGCGATAGCACCCCGGGAGAAAAAAAATGCAGCACCAGCACATGTTTGAG
1 CTCTGG---TG---ATG-G-T-G--CCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCTGAG
* * * *
325845 CCCAGCATGTGCACCCGTAAGCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGC
55 CCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGC
* * * *
325910 TTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCATGCAGGCGCTCAGTC
120 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * *
325975 GGCCAAAGGGGTAGGATGCGTAAGCCGAGGATTGACCGGGTCCCCCTCTGCATGCTGCCAATCTT
185 GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTACCGATCTT
** * * * *
326040 GCTGCGGCAACCCTCTGTTTGGTATGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAAC
250 GCTGCCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
326105 CGATGAAACAAGC---CGGTGCACGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCAGTGGA
315 CGACGAAACGAGCGGACGG-GCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* ** * * *
326167 TCAATAATGTGGTAGGTGGGTTTAGGAACTTCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
379 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
* *
326232 GGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGT
444 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
*
326297 TTTCTATTTTTCACGATTTTTAAAACTTTCTACGATTCGAGATTTTTAAAACTTTCTACGGTTCA
509 TTTCTATTTTTCATGATTTTT--AA------A--A--C----TTTTT---A-----T--GGTTCA
*
326362 GGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
548 GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
326427 TTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
613 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
326492 GAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
678 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
326557 GCTCTTTAAGGGGGTGTGAGTTCTCAAGTTTTGATGACGG-TAGGGGGCCAATATAAGGG-CAAG
743 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
*
326620 TACCAGCACCTATCGCACAT
808 TACCAGCACCCATCGCACAT
326640 TGTCGTAACG
Statistics
Matches: 3048, Mismatches: 353, Indels: 232
0.84 0.10 0.06
Matches are distributed among these distances:
875 92 0.03
876 4 0.00
878 4 0.00
879 2 0.00
882 1 0.00
883 1 0.00
884 73 0.02
885 257 0.08
886 401 0.13
887 600 0.20
888 83 0.03
889 34 0.01
890 2 0.00
891 3 0.00
892 1 0.00
893 5 0.00
894 5 0.00
895 2 0.00
896 1 0.00
897 3 0.00
898 3 0.00
899 236 0.08
900 594 0.19
901 11 0.00
902 252 0.08
904 1 0.00
905 1 0.00
907 1 0.00
908 2 0.00
909 5 0.00
911 5 0.00
912 95 0.03
915 5 0.00
918 1 0.00
923 1 0.00
925 225 0.07
926 18 0.01
927 18 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (889 bp):
CTCTGGTGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTG
CACCCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
CAGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCACAAC
CCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
GCGGACGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
ATGATTTTTAAAACTTTTTATGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
CCCGTCCCCCAATCGCCAGAACCCCTAATGCCGCCGGTCAGGTT
Found at i:325912 original size:26 final size:26
Alignment explanation
Indices: 325883--325935 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
325873 CCGGTCTGAT
325883 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
325909 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
325935 C
1 C
325936 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:326327 original size:26 final size:26
Alignment explanation
Indices: 326311--326369 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
326301 TATTTTTCAC
326311 GATTTTTAAAACTTTCTACGATTCGA
1 GATTTTTAAAACTTTCTACGATTCGA
*
326337 GATTTTTAAAACTTTCTACGGTTC-A
1 GATTTTTAAAACTTTCTACGATTCGA
326362 GGATTTTT
1 -GATTTTT
326370 TTAAAATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 1 0.03
26 30 0.97
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.46
Consensus pattern (26 bp):
GATTTTTAAAACTTTCTACGATTCGA
Done.