Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 20 of 93
Found at i:2246845 original size:239 final size:241
Alignment explanation
Indices: 2246383--2246866 Score: 724
Period size: 240 Copynumber: 2.0 Consensus size: 241
2246373 GGCTTGTAAA
*
2246383 TTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAGATGACTCGTTTTCTATTTT
1 TTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
* * * * ** * *
2246448 TCAGGATTTTTGAAAATTTTTACGGTTTGAGATTTTTTTAAAGTTTTTTCAGAAGGAATTTTGGC
66 TCACGATTCTTGAAAATTTTGACGGCTCAAGATTTTTTAAAAATTTTTTCAGAAGGAATTTTGGC
** * * *
2246513 CCCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTAGCTTGCACAAAAAATTTCAGCTAAAAAC
131 AACAAACTTGGTAGACGTGATCCTCGTATTTTTGTTAGCATGCACAAAAAAATGCAGCTAAAAAC
* *
2246578 TGGAACTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCAT
196 TCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCAT
*
2246623 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
1 TTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
2246688 TCACGATTCTT-AAAACTTTTGACGGCTCAAGATTTTTTAAAAATTTTTT-AGAAGGAGA-TTTG
66 TCACGATTCTTGAAAA-TTTTGACGGCTCAAGATTTTTTAAAAATTTTTTCAGAAGGA-ATTTTG
* *
2246750 GCAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCATAAAAAAATGCAGCTAAAA
129 GCAACAAACTTGGTAGACGTGATCCTCGTATTTTTGTTAGCATGCACAAAAAAATGCAGCTAAAA
* * *
2246815 ACTCGAAGTGTACAGGGTTTTGTGACCATTTGAAAAAAGTATCCCCAT
194 ACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCAT
2246863 TTCA
1 TTCA
2246867 GACACTTTAA
Statistics
Matches: 219, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
239 101 0.46
240 118 0.54
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37
Consensus pattern (241 bp):
TTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
TCACGATTCTTGAAAATTTTGACGGCTCAAGATTTTTTAAAAATTTTTTCAGAAGGAATTTTGGC
AACAAACTTGGTAGACGTGATCCTCGTATTTTTGTTAGCATGCACAAAAAAATGCAGCTAAAAAC
TCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCAT
Found at i:2247191 original size:26 final size:26
Alignment explanation
Indices: 2247155--2247207 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2247145 TCGGTCTGAT
2247155 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
2247181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2247207 C
1 C
2247208 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2247752 original size:26 final size:26
Alignment explanation
Indices: 2247723--2247775 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2247713 CTGGTCCGAT
2247723 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
2247749 CTTAGACTGGGAATGATCTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2247775 C
1 C
2247776 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2248272 original size:241 final size:242
Alignment explanation
Indices: 2247817--2248293 Score: 613
Period size: 241 Copynumber: 2.0 Consensus size: 242
2247807 GCTCAGTCAA
* * * *
2247817 CCAGAGGGGTAGGATGCGTAAGCCGGGGATCGACCGAGTCCCTCCTACGTGCTATCGATCCTACT
1 CCAGAGGGGCAGGATGCGTAAGCCGAGGATCGACCGAGTCCCCCCTACGTGCTATAGATCCTACT
* * *
2247882 GCCACAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACTGA
66 GCCACAACCTTCGGTCTGATCTGATCTTAGACTGGGAAAAAACTCCGTATGCCTAAGCCAACCGA
* * *** * *
2247947 TGAAACGAGCGGGCAGGCGGGTATTATGCCAGCCAGAGAGGCGGGATGCGCATACCGTGGAATGA
131 CGAAACGAGCGGACAGGCGACCACTATGCCAGCCAGAGAGGCGGGATGCGCATACCATGGAATGA
* *
2248012 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTACCGG
196 TAGAGAGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTACCGG
* * ** * *
2248059 CCAGAGGGGCAGGATGGGTAAGCCGAGGATTGGTCGGGTCCCCCCTACGTGCTGTAGATCCTACT
1 CCAGAGGGGCAGGATGCGTAAGCCGAGGATCGACCGAGTCCCCCCTACGTGCTATAGATCCTACT
* *
2248124 GCCACAACCGTT-GGT-TCGATTTGATTTTAGACT-GGAAAAAACTCCGTATGCCTAAGCCAACC
66 GCCACAACC-TTCGGTCT-GATCTGATCTTAGACTGGGAAAAAACTCCGTATGCCTAAGCCAACC
* * * * *
2248186 GACGAAACGGGCGGACGGGCGACCACTATGTCGGCCAGAGAGGCGGGATGTGCA-AGCCATGG-A
129 GACGAAACGAGCGGACAGGCGACCACTATGCCAGCCAGAGAGGCGGGATGCGCATA-CCATGGAA
*
2248249 TCGATAGAGAGGTAGGTGGGTTTAGGCACATCTTCATCTTTCTGC
193 T-GATAGAGAGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
2248294 CGTGGCAATG
Statistics
Matches: 201, Mismatches: 30, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
240 3 0.01
241 116 0.58
242 80 0.40
243 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.22
Consensus pattern (242 bp):
CCAGAGGGGCAGGATGCGTAAGCCGAGGATCGACCGAGTCCCCCCTACGTGCTATAGATCCTACT
GCCACAACCTTCGGTCTGATCTGATCTTAGACTGGGAAAAAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGACAGGCGACCACTATGCCAGCCAGAGAGGCGGGATGCGCATACCATGGAATGA
TAGAGAGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTACCGG
Found at i:2248867 original size:26 final size:26
Alignment explanation
Indices: 2248838--2248889 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2248828 CTTACACTGG
*
2248838 GAATGAACTCCGTATG-CTTAGATCAA
1 GAATGAACTCCATATGCCTTAG-TCAA
2248864 GAATGAACTCCATATGCCTTAGTCAA
1 GAATGAACTCCATATGCCTTAGTCAA
2248890 CCCACGAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (26 bp):
GAATGAACTCCATATGCCTTAGTCAA
Found at i:2249739 original size:26 final size:26
Alignment explanation
Indices: 2249689--2249741 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2249679 CCGGTCCGAT
*
2249689 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCAGTATG
* *
2249715 CTTAGACTGGGAATGAACTTAGTATG
1 CTTACACTGGGAATGAACTCAGTATG
2249741 C
1 C
2249742 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCAGTATG
Found at i:2250618 original size:25 final size:26
Alignment explanation
Indices: 2250584--2250635 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
2250574 CTGGTCTGAT
2250584 CTTACACTGGGAATGAAC-CCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
2250609 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2250635 C
1 C
2250636 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2252667 original size:894 final size:885
Alignment explanation
Indices: 2248989--2253038 Score: 4409
Period size: 894 Copynumber: 4.5 Consensus size: 885
2248979 ATCCTGCTGT
* * * * * * *
2248989 GAATGAACTCTGTGTGCCTAAGCTAACCGATGAAACGAGCGGGCGGGCAGCACTACGTCGGCCA-
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCTGCACTACGCCGGCCAG
* *
2249053 AGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
66 AGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
2249118 TCTGCCATGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
131 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* * * * **
2249183 GAAGTTTCATGGCAAGATGACTCGTGTTCTATTTTTCACTATTTTTGAAACCTTTTACAGTTCGG
196 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTACAGTTCAA
*
2249248 GATTTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT-CTTGTATT
261 GATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
2249312 TTTATTGGAATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
326 TTTTTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
2249377 AAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
390 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
2249441 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
455 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
2249506 ACCTGCACCCATCGCAAATCATGTGTGCACAACCCCCCCGCCCCCCCAATCGTCGGAACCCCAAT
520 ACCAGCACCCATCG-ACATCA--TGTGCACCACCCCCCCG-CCCCCCAATCGTCGGAA-CCCAAT
* *
2249571 GCCGTCGGTAAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGG-GCAAAAAAAAATGTGGCA
580 GCCGTCGGTCAGGTTCTCCGGCGATGCT-CGACGATGGTGCCCCGGAGC-AAAAAAAATGTGGCA
* * * * *
2249635 CCAGCACATGCCTGAGCCTAGCATGTGCACTCGCAACCCTCAGTCCGGTCCGATCTTACACTGGG
643 CCAGCACATGCC-GAGCC-AGCACGTGCACCCGCAACCCTCGGTCCGATCTGATCTTACACTGGG
* *
2249700 AATGAACTCCGTATGCTTAGACTGGGAATGAACT-TAGTATGCCAAAGTCAACCCACGAAATGAG
706 AATGAAATCCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCAAAGTCAACCCACAAAATGAG
** * * * * * * *
2249764 TTTACGTGCGCTCAACCGGCCAGCGGGGCAAGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCCC
770 CGTACGGGCGCTCAGCCGGCCAG-AGGGCAGGATGCACAAGCCGAGGAT-GGTCGGGT-CCCCCC
* * * *
2249829 TTCGTG-CTG-CTGATCCTGCTTTCGTA-ACCCTCAGTCTGGTCTGATCTTAGACTGG
832 -TAGTGTCTGCCT-ATCATGC-TAC-TAGACCCTCAGTCTAGTCTGATCTTAGACTGG
* * * * * * * *
2249884 AAATAAACTCAGTATGCCTAAGCCAACCGATGAAACGAGCGGGAGGGCCGACATTACGCCGGCCA
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCTG-CACTACGCCGGCCA
* * * * *
2249949 AAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATAT
65 GAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
2250014 TTCTGCCATGCC-ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
130 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* * * * *
2250078 TGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACTGTTCG
195 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTACAGTTCA
* * *
2250143 AGATTTTTTTAAAATTTTTTCAGAACGAGTTTTGG-CCCAAACTCGGTAGACGTGATCCTTGTAT
260 AGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * **
2250207 TTTTTTTGGCATGCACAAAAAATTTCAGTTAAAAACTCGAAGTGTACAGGATTTTGTCATAATTT
325 TTTTTTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
2250272 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
389 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
2250337 GCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
454 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
*
2250402 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGTCGGAACCCTAAT
519 TACCAGCACCCATCG-ACATCATGTGCAC-CACCCCCCCG-CCCCCCAATCGTCGGAACCC-AAT
* * *
2250467 GCCG-CGGTCAGGTTCTCCGGCGATGCTTCGATGATGGTGCCCC-AAGTGAAAAAAAATGTGGCA
580 GCCGTCGGTCAGGTTCTCCGGCGATGC-TCGACGATGGTGCCCCGGAG-CAAAAAAAATGTGGCA
* * * * *
2250530 CCAGCACATTCTCGAGCCTAGCACATGCACCTGCAACCCTCGGTCTGGTCTGATCTTACACTGGG
643 CCAGCACATGC-CGAGCC-AGCACGTGCACCCGCAACCCTCGGTCCGATCTGATCTTACACTGGG
*
2250595 AATG-AACCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCAAAGTCAACCCACAAAATGAGC
706 AATGAAATCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCAAAGTCAACCCACAAAATGAGC
*** * * * *
2250659 GTACGGGAATTCAGTCGGCCAGAGGGCAGG-T-CACAA-CCGGGGATTGTCGGTTTTCCCCCCCT
771 GTACGGGCGCTCAGCCGGCCAGAGGGCAGGATGCACAAGCCGAGGATGGTCGG--GT-CCCCCCT
* * * * * *
2250721 ACGTG-CTTGGCCTATTC-TAGCCAC-AG-GCCTCGGGGCAAATCTGATCTTTAGACT-G
833 A-GTGTC-T-GCCTA-TCAT-GCTACTAGACCCTC-AGTCTAGTCTGATC-TTAGACTGG
* *
2250776 G-ATGAACTCCGTATGCCTAAG--AACAGGACGAAACGA-CGACGGCGGGC-G--CTAC-CTGGG
1 GAATGAACTCCGTATGCCTAAGCCAAC-CGACGAAACGAGCGA--GCGGGCTGCACTACGC-CGG
* * * *
2250833 CCAGAGAGACG-GTTGCGCAAGCCGTGGATCTTATA-GGTGTTAGGTGGGTTTAGGCACCAT-TT
62 CCAGAGAGGCGAGATGCGCAAGCCGTGGATC-GATAGGGTGGTAGGTGGGTTTAGGCA-CATCTT
* * *
2250895 CATATTTTTCTGCCATGCCAATGCCATTTTTATGGCTTTGTAAATTCATTAAAAGGGTCCTTTAA
125 CATA--TTTCTGCCATGCCAATGCCATTTTTATGGC-TTGTAAATTCA-TACAATGGTCCCTTAA
* **
2250960 GCCTTTCATTGTGAAATTTCATGGC-AGACGACTCGTTTTCTATTTTTTCAC-ATTTTCAAAACA
186 GCC-TTCA-TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCACGATTTTTGAAACA
*
2251023 -TTTACAGTTTC-AGATTTTTTT-AAATTTTTTCAGAAAGATTTTTGGCCCCAAAACTGGTTGGT
248 TTTTACAG-TTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCC-AAAC---TTGGT
2251085 AGACGTGATCCTTGTAATTTTTTTTGGCAT-CACAAAAAACTTCAGCTATAAAACTCG-AGATGT
308 AGACGTGATCCTTGT-ATTTTTTTTGGCATGCACAAAAAA-TTCAGCTA-AAAACTCGAAG-TGT
* *
2251148 AC-GGATTTTGTGACCATTTGAAAAAAAAGTGT-CCTATTTCAGACAATTTAATGGGCTACT-GC
369 ACAGGATTTTGTGACCATTTG--AAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGC
*
2251210 AGCAAAACCTGT-AAATCTCAAA-GCTC-TT-A---GGTGTGCAGTTTCTTGAGGTTTTGATTGA
431 AGC-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-AG-TTCTCGAGG-TTTGA-TGA
* * * * *
2251268 GGGATAGAGCGCCAATATTAAGGGCCAAG-ACCAGCACCTATCGCACATCATGTGC-GCA----G
491 GGGATAGGGGGCCAATA-TAAGGGCCAAGTACCAGCACCCATCG-ACATCATGTGCACCACCCCC
* * * * * *
2251327 AC-CCCCCCAATCGTCGGAACCC-ATACC-ACTGGTCAGGTTCTCCGACGAGGCTCTTAGCGAT-
554 CCGCCCCCCAATCGTCGGAACCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTC-GA-CGATG
* * * * * * * *
2251388 GTG-CTCGGTGCAGAAAAAATATGGCA-CAGCACATTCCCGATCCCAG-ATGTGCACCCACAA-C
616 GTGCCCCGGAGCAAAAAAAATGTGGCACCAGCACA-TGCCGA-GCCAGCACGTGCACCCGCAACC
* * * * * **
2251449 CTCGATTCCAATCTAATCTTTAAACTGGATAGATGAACGCCGTATGCTTAGACTGGGAATGAACT
679 CTCG-GTCCGATCTGATC-TTACACTGG-GA-ATGAAATCCGTATGCTTAGACTGGGAATGAACT
* * * *
2251514 C-GATATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGCTAGGAT
740 CTG-TATGCCAAAGTCAACCCACAAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGC-AGGAT
* * * * * * * * *
2251578 GCTCAAGCC-AGGGATCGATCGGGTTCCCCCCT-GTGTGCTGCCGATCCTGTTGCCACAACCCTT
803 GCACAAGCCGA-GGAT-GGTCGGG-TCCCCCCTAGTGT-CTGCCTATCATGCTACTA-GACCCTC
* * *
2251641 GGTCCAGTCTGATCTTAAACTGG
863 AGTCTAGTCTGATCTTAGACTGG
* * * * * *
2251664 AAATGAACTCCGTATGCCTAAGCCAACCGAGGAAACGATCGAGTGGGCGAGTGGGCACTATGCTG
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC---T--GCACTACGCCG
* *
2251729 GCCAGAGAGGCAAGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
61 GCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
2251794 ATATTTTATGCCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCT
126 ATA-TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-
* *
2251857 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTCTCTGTTTTTCACGATTTTTGAAACATTTTAC
189 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTAC
* * *
2251922 GGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGCTAGACCTGATCC
254 AGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
2251987 TTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGA
319 TTGTATTTTTTTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * ** *
2252052 CCATTCGAAAGAAGTGTCCCCATTTTGGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATC
383 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
2252117 TCAAATGCTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGATGAGGGATTA-GGGGCTAATATTAA
448 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TAGGGGGCCAATA-TAA
**
2252181 GGGCCCAACAGTACCAGGC-CCCATCG-CATCATGTGCACCACCCCCCCG-CCCCCAATCACCGG
511 GGG-CC-A-AGTACCA-GCACCCATCGACATCATGTGCACCACCCCCCCGCCCCCCAATCGTCGG
* *
2252243 AACCGCAATGCCGTCGAATCAGGTTCTCCGGTGATGCTCGACG-T-G-GCCCTCGGAGCGAAGAA
572 AACC-CAATGCCGTCG-GTCAGGTTCTCCGGCGATGCTCGACGATGGTGCCC-CGGAGC-AA-AA
* * * * *
2252305 AAATGTGTGGGTAGCAAG-ACATGCCGAGCC-G-ACGTGCACCCGTGGAACCCTCGGTCTGAT-T
632 AAA-ATGT-GGCA-CCAGCACATGCCGAGCCAGCACGTGCACCC--GCAACCCTCGGTCCGATCT
* * *
2252366 GAATCTT-CACT-GGAATGAAATCCGTGTTATGCTTAGCCTGAGAATAAACTCTGTATGCCAAAG
692 G-ATCTTACACTGGGAATGAAATCC--G-TATGCTTAGACTGGGAATGAACTCTGTATGCCAAAG
* ** * * * * * *
2252429 TCAACCAATGAAATGAGCGTGCGGGCGCTCTGTCGGCCAGAGGGGCAGGATGCATAAGGTCGAGC
753 TCAACCCACAAAATGAGCGTACGGGCGCTCAGCCGGCCAGA-GGGCAGGATGCACAA-GCCGAGG
* * *
2252494 A-GGTCGGGT-CCCCCTAGT-TTTG-CTATCGATGTCTACTATGACCCTCAGTTTGGTCTGATCT
816 ATGGTCGGGTCCCCCCTAGTGTCTGCCTATC-ATG-CTACTA-GACCCTCAGTCTAGTCTGATCT
2252555 TAGACTGG
878 TAGACTGG
*
2252563 GAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCTGCACTACGCCGGCCAG
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCTGCACTACGCCGGCCAG
* *
2252628 AGAGGCGAGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATT
66 AGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * * *
2252693 GCTGCTAGGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCATGT
131 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* * * * * *
2252758 CAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTCCACGATTTTTGAAACTTTTTACAGTTCAG
196 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTACAGTTCAA
* * ** *
2252823 GATTTTTTTTAAATTTTTTTAGAAGGGGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATT
261 GATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
2252888 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
326 TTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
* * *
2252953 AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCCCAAATG
390 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
2253018 CTCTTTAAGGGGGTGTGAGTT
455 CTCTTTAAGGGGGTGTGAGTT
2253039 NNNNNNNNNN
Statistics
Matches: 2684, Mismatches: 314, Indels: 315
0.81 0.09 0.10
Matches are distributed among these distances:
881 5 0.00
882 18 0.01
883 20 0.01
884 27 0.01
885 28 0.01
886 145 0.05
887 39 0.01
888 28 0.01
889 88 0.03
890 129 0.05
891 147 0.05
892 108 0.04
893 110 0.04
894 527 0.20
895 311 0.12
896 343 0.13
897 278 0.10
898 49 0.02
899 103 0.04
900 12 0.00
901 15 0.01
902 110 0.04
903 16 0.01
904 18 0.01
905 8 0.00
906 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (885 bp):
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCTGCACTACGCCGGCCAG
AGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTACAGTTCAA
GATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGACATCATGTGCACCACCCCCCCGCCCCCCAATCGTCGGAACCCAATGCCGTC
GGTCAGGTTCTCCGGCGATGCTCGACGATGGTGCCCCGGAGCAAAAAAAATGTGGCACCAGCACA
TGCCGAGCCAGCACGTGCACCCGCAACCCTCGGTCCGATCTGATCTTACACTGGGAATGAAATCC
GTATGCTTAGACTGGGAATGAACTCTGTATGCCAAAGTCAACCCACAAAATGAGCGTACGGGCGC
TCAGCCGGCCAGAGGGCAGGATGCACAAGCCGAGGATGGTCGGGTCCCCCCTAGTGTCTGCCTAT
CATGCTACTAGACCCTCAGTCTAGTCTGATCTTAGACTGG
Found at i:2255607 original size:25 final size:26
Alignment explanation
Indices: 2255578--2255627 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
2255568 TGACTTAGGG
2255578 ATACGGAGTTCATTC-CAGTCTAAGC
1 ATACGGAGTTCATTCACAGTCTAAGC
*
2255603 ATACGGAGTTCATTCACAGTGTAAG
1 ATACGGAGTTCATTCACAGTCTAAG
2255628 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATTCACAGTCTAAGC
Found at i:2256483 original size:26 final size:26
Alignment explanation
Indices: 2256447--2256499 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2256437 GTTGACTTAG
2256447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2256473 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2256499 G
1 G
2256500 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2265061 original size:896 final size:896
Alignment explanation
Indices: 2263149--2267645 Score: 6165
Period size: 896 Copynumber: 5.0 Consensus size: 896
2263139 CCAGGGTGTG
* *
2263149 ACAC-AGGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCC
1 ACACAAGGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * *
2263213 GCACG-TTGGTTCGTGGGTTGACTT-GGCATA-TGAAGTTCATTCCCAGTCTAAGCATACGGAGT
66 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGT
* ** * *
2263275 TCATTCCCAGTGTAACATCGGAATGGATCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGT
130 TCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGT
* * * * * *
2263340 GCTGGTGTCGTATTTTTTTTCACCCGAGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCAA
195 GCTGGT-CCGCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCGTC-GAAAACCTGACCGA
* * **
2263405 CGGCATTGGGGTTCCGGCAATTGGGGGGCGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
258 CGGCATTGGGGTTCCGACGATT-GGGGG-GGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
2263470 CTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTA
321 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
2263535 AAAAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
386 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
2263600 TTTTTCAAATGGTCACAAAATCCTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
451 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
2263665 AAAAAAATACAATGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAA
516 AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAA
* *
2263730 AAAATCTC-GAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
580 AAAATC-CAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
2263794 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCA
644 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
2263859 TGGCAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACAGCTTGCGCAT-C
709 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
* * *
2263923 CGTCCTCTCTGACCGGCGTAGTGCCCGCCCGTCCGCTC-TTTCCGTCAGTTGGCTTAGGCATACA
774 CGT-CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTT-CGTCGGTTGGCTTAGGCATACA
* ** ** ** *
2263987 GAGTTCATTCCCAATCTAAGATCAGA-TTGGATTGAGGGTTGCAATAGCAAGAACGGCAGC
837 GAGTTCATTCCCAGTCTAAGATCAGACCAGG-CCGAGGGTTGCAGCAGCAAGATCGGCAGC
** * * * *
2264047 ATGCAAGGGGGGACCCGACCAATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCC
1 ACACAAGGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * ** *
2264112 GCACGTTCGTTCCGTGGGTTGACTTAGGCATATGGAGTTCATT-CCAATCTAAGCATACGGAGTT
66 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
2264176 CATTCCCAGTGTAATATTGGACCGGACCGAGGGTTACGGGTGCACATGCTGTGCTTGGGCATGTG
131 CATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
* * * * * *
2264241 CTAGT-CACATTTTTTTTCACCCGGGGCACCATCGTTGGATCATTGTCGCGGAAAACCTGACCGG
196 CTGGTCCGCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCGT--C-GAAAACCTGACCGA
* * *
2264305 TGGCATTAGGGTTCCGACGATTGGGGGTGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
258 CGGCATTGGGGTTCCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
2264370 GGTACTT-GCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCTCTTAAA
323 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
2264434 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
388 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
2264499 TTTCAAATGGTCACAAAATCCTGTAAACTTCGAGTTTTTAGCTGAA-TTTTTTGTTGCATGCAAA
453 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAA
*
2264563 AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAATCTCCTTCTGAAAAAATTTTAAAAA
517 AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * * *
2264628 AATCAAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGCCGTCTTGCCATGGAA
582 AATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
2264693 CTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGTATTGGCATGG
647 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * ** * *
2264758 CAGAAATATGAAGATCTGTCTAAACTGACATACCACCCTATCGATCCACGGCTTGCGCATCCCGT
712 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
* * * *
2264823 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTGGGCATACAGAGTT
777 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTT
* * * ** * * * *
2264888 CATTCCCAGTCTAAGAT-GGATCAGGCCAAGGGTTGTGGTAGTATGATTGGCAGC
842 CATTCCCAGTCTAAGATCAGACCAGGCCGAGGGTTGCAGCAGCAAGATCGGCAGC
** * * **
2264942 ATGC-AGGGGGCGACCCGGCTGATCCCCGGCTCGCGCATCCTGTTCCTCTGGCCGGCTGAGCGCC
1 ACACAAGGGGG-GACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
2265006 TGCACGCTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGT
65 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * **
2265071 TCATTCCCAATGTAAGATCGGACTGGATCGAGGGTTGCAGGTGCACATGCTGGGCTCGAACATGT
130 TCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGT
** *
2265136 GCTGGTGCCGCATTTTTTTTTGCCTGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGACCGA
195 GCTGGT-CCGCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCGTCGAA-AACCTGACCGA
** * *
2265201 CGGCATTGGGGTTCCGACGATT--GGGGG-AAGGGGGTGTACGCACATGATGTGCAATGGGTGCC
258 CGGCATTGGGGTTCCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTG-C
* * * *
2265263 T-GAACTTGGCCCTTATATTGGCCCCCTATTCCACATCAAACCTCGAGAACTCACACCCCTTTAA
322 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
2265327 AAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACAT
387 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
2265392 TTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
452 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * * *
2265457 AAAAATTACAAGGATCACGTCTACAAAGATTAGGGG-CAAAAATCCTTCTGAAAAAATTTTTAAA
517 AAAAAATACAAGGATCACATCTACCAAG-TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
*
2265521 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
581 AAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * **
2265586 ACTTCACATTAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAAAAGCATTGGCATG
646 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* ** * ** *
2265651 GCACAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCTCG
711 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCG
* * *
2265716 CCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
776 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
* * * * * * * *
2265781 TCATTCTCAATCTAAGATCAGACC-GGACTGAGGGTTACGGCAGCAGGATCAGCAGT
841 TCATTCCCAGTCTAAGATCAGACCAGG-CCGAGGGTTGCAGCAGCAAGATCGGCAGC
* ** * *
2265837 ACACAAGGGGGGTCCCAACCGATCCCTGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
1 ACACAAGGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* *
2265902 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTT
66 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
2265967 CATTCCCAGTGTAAGATCGGACCGGACCAAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTG
131 CATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
* * * * * * *
2266032 CTGGTGCCTCATTGTTTTTTCGCCCAGGGCACCATCGTCGGACCATCGCCAGAGAACCTGACCGG
196 CTGGT-CCGCATT-TTTTTTCACCCGGGGCACCATCGTCGGAGCATCGTC-GAAAACCTGACCGA
* ** * * *
2266097 TGGCATTGGGGTTCCGGTGATTGGGGGGGACAGGGGGTGTGCGCACATGATATGCGATGGGTGCT
258 CGGCATTGGGGTTCCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
2266162 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTATA
323 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
2266227 GAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAAATGGGGACACTTT
388 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
2266292 TTTCATATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
453 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * *
2266357 AAAAATACAAGGATCACATCTACCCAGTTTGGGACCAAAACTCCTTTTGAAAAAAATTTAAAAAA
518 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
** * *
2266422 A-CTCA-AACTATAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
583 ATC-CAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
2266485 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
647 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
2266550 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC-T
712 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
* *
2266614 CCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
777 -CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
** *
2266679 TCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCAGCAGCAAGATC-GTAGC
841 TCATTCCCAGTCTAAGATCAGACCAGGCCGAGGGTTGCAGCAGCAAGATCGGCAGC
* * *
2266734 ACACAAGGGGGGACCCGGTCGATCCCCGACTTGCGGATCCTGCCCCTCTGGCCGGCTGAGCGCCC
1 ACACAAGGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * *
2266799 GCACGCTCATTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
66 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * * *
2266863 CATTCCCAATGTAATATCGGACCAGACCAAGGGTTGTGGGTGCACATGCTGTGCTTGGGCATGTG
131 CATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
* * * *
2266928 CTGGTGCCTGCATTTGTTTTCACCCGGGCCACCA---TC---G--TCGT-AAAAACCTGATCGAC
196 CTGGT-CC-GCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCGTCGAAAACCTGACCGAC
* * *
2266984 GGCATTAGGGTTCCGACGATTGGGGGGGTCGGTGGGTGTGTGCACATGATGTGCGATGGGTGCTG
259 GGCATTGGGGTTCCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
2267049 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAG
324 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
2267114 AGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTTTGAAATGGGGACACTTTT
389 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTT
* * *
2267179 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAT
453 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
** * * *
2267244 AAAAATACAAGGATCATGTATACTAAG-TTGGGGCCAAAAATCCTTCTGAAAAAATTTT-AAAAA
518 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* *
2267307 ATCCCA-AACCGTAAAAA-TTTCAAAAATCGTGAAAAATAG-AAACAAGTCGTCTTGCCATTAAA
583 AT-CCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
2267369 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGA
647 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * *
2267434 CAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGCTTGCACATCCCGC
712 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
* * * * *
2267499 CTCTCTGGCCGGCGTAGTGGCCGCCCACCCGATCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
777 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTT
* ** * * * ** * **
2267564 CATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTCCAGTAATAGGATCAACAGC
842 CATTCCCAGTCTAAGATCAGACCAGGCCGAGGGTTGCAGCAGCAAGATCGGCAGC
* * *
2267619 ACGCAGGGGGGGACCCGGTCGATCCCC
1 ACACAAGGGGGGACCCGGCCGATCCCC
2267646 AGTGTCTTGA
Statistics
Matches: 3187, Mismatches: 373, Indels: 91
0.87 0.10 0.02
Matches are distributed among these distances:
884 243 0.08
885 55 0.02
886 223 0.07
887 86 0.03
888 3 0.00
893 36 0.01
894 479 0.15
895 323 0.10
896 569 0.18
897 308 0.10
898 397 0.12
899 323 0.10
900 127 0.04
901 14 0.00
902 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
ACACAAGGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
CTGGTCCGCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCGTCGAAAACCTGACCGACGG
CATTGGGGTTCCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
CAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT
CCCAGTCTAAGATCAGACCAGGCCGAGGGTTGCAGCAGCAAGATCGGCAGC
Found at i:2265086 original size:26 final size:26
Alignment explanation
Indices: 2265034--2265086 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2265024 GTTCACTTAG
*
2265034 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
2265060 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2265086 G
1 G
2265087 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2273428 original size:26 final size:26
Alignment explanation
Indices: 2273392--2273470 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
2273382 GTTGACTTAG
*
2273392 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
2273418 GCATACGGAGTTCA-TTCCAAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
* * *
2273444 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTTCCAGTCTAA
2273470 G
1 G
2273471 ATCAGATCGG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 4 0.09
26 40 0.85
27 3 0.06
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:2274369 original size:26 final size:26
Alignment explanation
Indices: 2274317--2274369 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2274307 GTTGACTTAG
*
2274317 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
2274343 GCATAC-AGAGTTCATTCCCAATGTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
2274369 G
1 G
2274370 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2275418 original size:897 final size:895
Alignment explanation
Indices: 2273418--2280325 Score: 8333
Period size: 897 Copynumber: 7.8 Consensus size: 895
2273408 TCCAGTCTAA
* ** * *
2273418 GCATACGGAGTTCATTCCAAGTCTAAGCATATGGAGTTCATTCCCAGTATAAGATCAGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGATCGGAC
* * *
2273483 CGAGGGTTACGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCTCATTTTTTTTCACCCGGG
66 CGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGG
** * * * * * * *
2273548 GCACCATCACCGAAGCATCGCCGGAGAACCTAACCGATGGCATTAGGGTTTCGACGATTAGGGGG
131 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGTCATTGGGGTTCCGACGATT-GGGGG
* * * * *
2273613 CGGGAGGGTGGTGTGTGCACATGATGTGCAATGGGTGCTGCTACTTGGCCCATATATTGGCCCCC
195 -GCG-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
2273678 TATCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
257 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
2273743 TGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCCTGTAC
322 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* * * * * *
2273808 ACTTCAAGCTTTCAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
387 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCACGTCTACCAA
* *
2273873 GTTTGGGGCCTGAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAA
452 GTTTGGGGCC-AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACTGTAAAAAGTTTCAAA
*
2273938 AATCGCT-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGACCA
516 AATCG-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
* *
2274002 TTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGGCAAAAATATGAAGATGTGCCTAAAC
580 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
* * ** * * *
2274067 CCACTTGCCACCCTATCGATCCACGGCTTATGCATCCCGCCTCTCTGGCCGGCGTAGTGCGCACC
645 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCC
* * *
2274132 CGCCCGCTCGTTTCGTCGGTAGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCATACCGG
710 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* ** * * * * *
2274197 ACTGAGGGTTGTGATAGCAGGATCGACAACACGCA-GGGGGACCCGGTTGATCCCCGGCTTGGGC
775 ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCCCGGCTTGTGC
* * * *
2274261 ATCCAGCCCTTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
840 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* *
2274317 GCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATGTAAGATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGATCGGAC
* * * * * *
2274382 CGAGGGTTGCTGATGCACATGCTGGGCTCGGGCATGTGATGGTGCCACA-TTTTTTTCGCCCAGG
66 CGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGG
* * * *
2274446 GCACAATCGTCAGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTGCGACGATTAGGGGG
131 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGTCATTGGGGTTCCGACGATT-GGGGG
* * **
2274511 GCGAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCTTCT
195 GC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
**
2274576 ATCCCTCATCAAACCTCGAGAACTCATGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
258 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * **
2274641 TCCAGTAGCCATTCAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCAATACA
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * * *
2274706 CTTCGAGTTTTTAGCTGAATTGTTTTGTGCAAGCCAACAAAAATAGAAGAATCACGTCTACCAAG
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCACGTCTACCAAG
*
2274771 TTTGGGGCCAAAACTCCTTCTGAAAAAGTTTTAAAAAAATCTCAAACTGTAAAAAGTTTCAAAAA
453 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACTGTAAAAAGTTTCAAAAA
*
2274836 TCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
518 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
2274901 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGGTAGAAATATGAAGATGTGCCTAAACCCA
583 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* *
2274966 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGATGTAGTGCCCGCCCGC
648 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * **
2275031 CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAACT
713 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT
*
2275096 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCCCAGCTTGTGCATC
778 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCCCGGCTTGTGCATC
* *
2275161 CTGCCCCTCTGGCCGGCTGAGTGCCCACACGCTTGTTTCGTGGGTTGACTTAG
843 CTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * * *
2275214 GCATACGGAGTTCACTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTATGGTTGGA-CTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGATC-GGA
* * * *
2275278 CCGAGGGTTGTGGGTGCACATGCTGGGCTTTGGCATGTGATGGTGCCGCATTTTTCTCTCGCCCG
65 CCGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTT-TTTCGCCCG
** *
2275343 GGGTGCCATCGTCGGAGCATCGTCGGAGAACCTAACCGACGTCATTAGGGGTTCCGGAC-ATTGG
129 GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGTCATT-GGGGTTCC-GACGATTGG
* *
2275407 GGGGCGGGGGGTGTGCGTACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
192 GGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
2275472 TATTCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
257 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
2275537 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCCTGTAC
322 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* *
2275602 ACTTCGAGTTATTAGCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCACGTGTACCAA
387 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCACGTCTACCAA
* * ** * *
2275667 GTTTAGGGCCAAAACTCCTTCTGAAAAAATTCTAAAAAAATCTTGAACCGTAAAATGTTTCAAAA
452 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACTGTAAAAAGTTTCAAAA
* *
2275732 ATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACATGAAGGCTTAAGGGACCATT
517 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* *
2275797 ATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGTCTAAACCC
582 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * * * *
2275862 ACTTGCCATCCTATCGATCCACGGCTTGTGCATCCCACCTCTATGGCCTACGTAATGCCCGCCCG
647 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCG
* * * ** *
2275927 CCCGCCCGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCTAGTCTAAGATTGGACTGGAC
712 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * * * * *
2275992 AGAGGGTTGCAGCAGCAGGATTGGTAGCACGCAGGAGGGACCC-AGTCAATCCCCGGCCTGCGCA
777 TGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGA-TCGATCCCCGGCTTGTGCA
* * * * *
2276056 TCCTACACCTCTGGCCGGCTGAGCGCTCGCACGCTTGTTTCGTGGGTTGACTTAG
841 TCCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * *
2276111 GCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGATCGGAC
* * * * * *
2276176 CAAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTTGCCCGTG
66 CGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGG
* * * * * * * *
2276241 GCACCATCGCCGAAGCATCGCCAGAGAACATGACC-A-GTGGCATTGGGGTTTCGAAGATTAGGG
131 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGT--CATTGGGGTTCCGACGATTGGGG
** *
2276304 GATGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
194 GGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
2276369 TCCCTCATCATACCTCGAGAATTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTG
259 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
2276434 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCCTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* *
2276499 TTCGAGTTATTAGCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCACGTGTACCAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCACGTCTACCAAGT
* * * * * *
2276564 TTAGGGCCAAAACTCCTTCTGAAAAAATTCTAAAAACATC-CTAAACCGTAAAATGATTC-AAAA
454 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC-AAACTGTAAAAAGTTTCAAAAA
*
2276627 TCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACATGAAGGCTTAAGGGACCATTG
518 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
2276692 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
583 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
** *
2276757 CCTACCACCCTATCGATCCATAGCTTGCGCATCCCGCCTCTCTGGCCGTCGTAGTGCCCGCCCGC
648 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
*
2276822 CCG-TACGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
713 CCGCT-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * *
2276886 TGAGGGTTGTGGCAGCAGGAGCAGTAGCAAGATTGGCAGCACGTAGGGGGGGACTCGGTCGATCC
777 TGAGGGTTGCGGCAGCA-G-G-A-T--C------GGCAGCACGCA-GGGGGGACCCGATCGATCC
* * *
2276951 CTGGCTTGTGCATCCTGCCCCTTTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTT
829 CCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTT
2277016 AG
894 AG
* *
2277018 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAAGTTCATTCCCAGTGTAAGATTGGA-CTGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTGTAAGATCGGATCGGA
* *
2277081 TCC-AGGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTCTTTC-CCT
65 -CCGA-GGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCGCC-
* ** *
2277143 CGGGGCGCCATCGTCGGAGCATCGTCGGAGAACCTGACCGACAACATTGGGGTT-CTAGCGATTG
127 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGTCATTGGGGTTCCGA-CGATTG
* * *
2277207 GGGGGCAGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGG-CCT
191 GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* ** *
2277271 CTATCCCTCATCGAACCTCGAGAACTCACACCCTTTTAAAGAGCATTTGAGATTTTACAAGTTTG
256 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
2277336 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAATGGTCACAAAATCCTGTA
321 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
* * *
2277401 CACTTCGAGTTATTAACTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCACGTGTACCA
386 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCACGTCTACCA
* * * *
2277466 AGTTTAGGGCCAAAACTCCTTCTGAAAAAATTCTAAAAAAATC-CTGAACTGTAAAATGTTTCAA
451 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC-AAACTGTAAAAAGTTTCAA
* *
2277530 AAATCATGAAAAATA-AAAACGAGTCGTCTTGCAATGAAACTTCACATGAAGGCTTAAGGGACCA
515 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
*
2277594 TTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
580 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
* *
2277659 CTACCTACCACCCTATCGATCCACGGCTTACGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCC
645 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCC
* * *
2277724 CGCCCGCACGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGG
710 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * *
2277789 ATTGAGGGTTGCAGTAGTAGGAGCAGTAACAGGATTGGCAGCACGTAGGGGGGACTCGGTCGATC
775 ACTGAGGGTTGC--------G-GCAG---CAGGATCGGCAGCACGCAGGGGGGACCCGATCGATC
* * *
2277854 CCTGGCTTGTGCATCCAGCCCCTCTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACT
828 CCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACT
2277919 TAG
893 TAG
* * * *
2277922 GCATACGAAGTTCCTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCGGTC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGATCGGAC
* * * * *
2277987 CGAGGGCTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCAGCA-TTTTTTTC-CCTCAG
66 CGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCGCC-CGG
* *
2278050 GGCACCATCGTCGGAACCATCGTCGGAGAACCTGACCG--GTAGCATTGGGGTT-CTAGCGATTG
130 GGCACCATCGTCGG-AGCATCGTCGGAGAACCTGACCGACGT--CATTGGGGTTCCGA-CGATTG
* * * *
2278112 GGGGGCGGGGGGTGTGCGCACATGATGTGTGATTGGTGCTGGTATTTGGCCCTTATATTGG-CCT
191 GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
2278176 CTATCCCTCATCGAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTT-
256 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
2278240 CTGGCAGTAGCCATTAAAGT-TTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
321 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
* * *
2278304 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAAAAATACAAGGATCATGTCTACCA
386 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCACGTCTACCA
* ** * *
2278369 AGTTTGGTGCCAAAACTAATTCTG-AAAAATTTTAAAAAAATCCCGAACTGTAAAAAGTTTCAAA
451 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACTGTAAAAAGTTTCAAA
* *
2278433 AATCGTGAAAAATATAAAACGAGACGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
516 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* *
2278498 TGTATGAATTTACAAGCCATATAAATGGCATTGGCATGGCAGAAATATGAACATGTGCCTAAACC
581 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* **
2278563 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCTTCTCTGGTTGACGTAGTGCCCGCCC
646 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCC
* * * * *
2278628 GCCCGCTCGTTTCGTCGATTGGGTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCATACCAGA
711 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * *
2278693 CTGAGGGTTGTGGCACCAGGATTGGCAGCACGAAGAGGGGGACCCGACCGATCCCCGACTTGCT-
776 CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG-GGGGGACCCGATCGATCCCCGGCTTG-TG
* *
2278757 CATCCTGCCCCTCTGGTCGGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAG
839 CATCCTGCCCCTCTGGCCGG-CTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * *
2278815 GCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGATCGGAC
* * * * * * * * *
2278880 CAAGGGTTGCAGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGTCGTATTTTTTTTCACCCGAG
66 CGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGG
* * * * * * *
2278945 GCACCATCATCGGAGCATCATCAGAGAACCTAACTGACGGCATTGGGGTTTCGACGATTGGGGGG
131 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGTCATTGGGGTTCCGACGATTGGGGGG
* * * * *
2279010 CAGGAGGGGGTGTGCGCACATGATGTACAAT-GGTGCTTGTATTTGGCCATTATATTGGCCCCCT
196 C--G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
2279074 ATCCCTCATCAAACCTCGAAAATTCACACCCCTTTAAACAGCATTTGAGATTTTACAGGTTTGCT
258 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * **
2279139 ACCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCAATACA
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * * * **
2279204 CTTAGAGTTTTTAGCTGAATTATTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTATTAAG
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCACGTCTACCAAG
* * * *
2279269 TTTGGGGTCGACACTCCTTCTGAAAAAATTTTAAAAAAAATCTCAAACCGTAAAAAGTTTCAAAA
453 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAAATCTCAAACTGTAAAAAGTTTCAAAA
*
2279334 ATCGTG-AAAATAGAAAACGAGTCGTCTTGCCATG-AAGTTCACAATG-A-GC-TAAGGGACC-T
517 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC-ATGAAGGCTTAAGGGACCAT
* * * * *
2279393 T-CATTGAATTTTC-AGCCATAAGTATTGCCATTGGCAT-G-AGAAAT-T---G--GTGCCTAAA
581 TGTA-TGAATTTACAAGCCATAA-AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT-AA
* * *
2279448 ACCCA-CTACGACCCTA-CGATCCA-GACTTGCGGCAT-CCG-CT-T-TTGCCGA-GTTAGTG-C
643 ACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGCCTCTCTGGCCGACG-TAGTGCC
* *
2279504 CGCCCGTACCG-TCCGTTTCGGTCGGTTGGCTTAGGCATACGGAGGGGTTTCATTCCCAGTC-GA
706 CGCCCG-CCCGCT-CGTTTC-GTCGGTTGGCTTAGGCATACGGA---G-TTCATTCCCAGTCTAA
* * * * * * * *
2279567 GATTAGACCGAAGC-AAGTGTTGC-GCA-TA-GATCGACAGCACGTA-GGGGGA-CCGATTGATC
764 GATCAGACCGGA-CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATC
* * * * * *** *
2279626 CTC-GCATG-CCATCCTG-CCCTTTGG-CGAGCTGAGCACCTGTTACGCTC-ATTCGT-GGTT-A
828 CCCGGCTTGTGCATCCTGCCCCTCTGGCCG-GCTGAGCGCC-CACACGCTCGTTTCGTGGGTTGA
*
2279684 ATTA-
891 CTTAG
* * * * * *
2279688 GCAT-CAGAG-TCCTT-TCTGTCT-AGC-TACAGAGTTCATT-CCAGTGTAAGATTGGA-CTGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGATCGGA-
* * * * **
2279746 CCGAAGTTTACGGGTGCA-ATACT-GGCTTGGG-ATGTGCTATTGCCGC-TTTTTTTTCGCGCCG
65 CCGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCGC-CCG
* * * * * * **
2279807 AGGCACCAT-G-CCGAGCATCATCGGAGAACCTGACCTACGACATTGGGGTTCTGGTGATT-GGG
129 GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGTCATTGGGGTTCCGACGATTGGGG
* * ** *
2279869 GGCGGGAGGTGTGTG-ACATTGATGTGCGAGTGGGTGCTATTACATGGCCCTTTATATT-GCCCC
194 GGCGGGGGGTGTGCGCACA-TGATGTGCGA-TGGGTGCTGGTACTTGGCCC-TTATATTGGCCCC
* * * *
2279932 CTATCTCTCATC-AACCT--A-AACCCACACCCCCTAAAAG-GGATTTGAGATTTTTA-AGGTTT
256 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTT
* **
2279991 GCTGCCA-TA-CC-TTAAAG-GTGTGAAA--GGGAC-C--TTTTC-AAT--TCACATCATCCTGT
320 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
* * * ** *
2280044 ACACTTCGGAGTTTTTA-CTGAATTGTTTTGTGCAAAG-C-A-CAAAAT--AA-GATCTCCCCCA
385 ACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGC-AAGCCAAGAAAAATACAAGGATCACGTCTA
* * * * * * *
2280102 CCAA-TTTAGGGCC---ACTTC-T-TGAAAAATTTTTTTTGTAAAAAATCCCGAACCGT--AAAG
448 CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA---ATTTT-AAAAAAATCTCAAACTGTAAAAAG
* *
2280159 TTTCAATAATAGTG-AAAATAGAATACACG-GT-GTCTTGCCCATGAAACTTCACATGAAGGCCT
509 TTTCAAAAATCGTGAAAAATAGAA-A-ACGAGTCGTCTTG-CCATGAAACTTCACATGAAGG-CT
* * *
2280221 TAAGGGACCATT-TTTGAA-TTACAAGCCATAAGAATGGCATTGGCAT-G-AAAAAT-TG-A-AT
570 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
*
2280279 -TGCCTAAA-CCAACTACCACCCTATCG-TCCACGGCTTGCGCATCCCGC
635 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
2280326 NNNNNNNNNN
Statistics
Matches: 5314, Mismatches: 572, Indels: 305
0.86 0.09 0.05
Matches are distributed among these distances:
832 7 0.00
833 32 0.01
834 15 0.00
835 30 0.01
836 1 0.00
837 33 0.01
838 51 0.01
839 20 0.00
841 5 0.00
842 1 0.00
843 32 0.01
844 11 0.00
845 3 0.00
846 5 0.00
848 1 0.00
849 5 0.00
851 7 0.00
852 6 0.00
853 2 0.00
854 2 0.00
855 20 0.00
856 19 0.00
857 4 0.00
858 17 0.00
859 7 0.00
860 29 0.01
861 13 0.00
862 39 0.01
863 10 0.00
864 23 0.00
865 6 0.00
866 7 0.00
867 27 0.01
868 13 0.00
869 3 0.00
870 5 0.00
871 4 0.00
872 3 0.00
873 4 0.00
874 4 0.00
875 4 0.00
876 14 0.00
877 14 0.00
878 7 0.00
879 3 0.00
880 10 0.00
881 15 0.00
882 18 0.00
883 33 0.01
884 2 0.00
885 12 0.00
886 27 0.01
887 30 0.01
888 7 0.00
891 18 0.00
892 40 0.01
893 182 0.03
894 297 0.06
895 373 0.07
896 449 0.08
897 1167 0.22
898 200 0.04
899 194 0.04
900 45 0.01
901 3 0.00
902 49 0.01
903 358 0.07
904 227 0.04
905 669 0.13
906 137 0.03
907 173 0.03
913 2 0.00
914 5 0.00
915 1 0.00
916 1 0.00
917 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGATCGGAC
CGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGG
GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGTCATTGGGGTTCCGACGATTGGGGGG
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACTGTAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAG
GGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTG
CCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
Found at i:2277055 original size:26 final size:26
Alignment explanation
Indices: 2277018--2277070 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2277008 GTTGACTTAG
*
2277018 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2277044 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2277070 G
1 G
2277071 ATTGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2277959 original size:26 final size:26
Alignment explanation
Indices: 2277922--2277974 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2277912 GTTGACTTAG
*
2277922 GCATACGAAGTTCCTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
2277948 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2277974 G
1 G
2277975 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2281573 original size:26 final size:26
Alignment explanation
Indices: 2281537--2281589 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2281527 GTTGACTTAG
*
2281537 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2281563 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2281589 G
1 G
2281590 ATCCCACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2286864 original size:26 final size:26
Alignment explanation
Indices: 2286812--2286864 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2286802 GTTGACTTAG
* * *
2286812 GCATACGGGGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
*
2286838 GCATACGGAGTTCATTCCCAGAGTAA
1 GCATACGGAGTTCATTCCCAGACTAA
2286864 G
1 G
2286865 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:2287549 original size:896 final size:893
Alignment explanation
Indices: 2281326--2288073 Score: 7993
Period size: 896 Copynumber: 7.6 Consensus size: 893
2281316 NNNNNNNNNN
* * * *
2281326 TCTCTAGCCGACGTAGTGCCCGCCTGCCTGCTCGTTTCGTC-AGTTGGCTTAGGCATACGGAGTT
1 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTT
* * *** * *
2281390 CAATCCCAGTCTAAGATCAGACTGGACTG-AGGTT-TGTAGCAGTTGGATTGACAGCACGTAAGG
65 CATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTATG--GCAGCAAGATTGGCAGCACG-CAGG
* * * * * ** *
2281453 GAGGACCCGACCGATCCCCGACTTGCGCATCTTGCCCCTCTGGCCGACTGAACGCCTACATGCTC
127 GGGGACCCGA-CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTC
* *
2281518 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
190 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
** *
2281583 GTGTAAGATCCCACCAGACTGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCTTGTGCTGGTGCC
255 GTGTAAGATCGGACC-GACTGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * * * * * *
2281648 CCATTTTTTTTCGCTCGAGGCACCATCACCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTAG
319 GCATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACTTGACCGACGGCATTGG
* * * * * * *
2281713 GGTT-TCGGTGATTGGGGGCCAGGGGGGTGTGCACACATGATGTGTGATGGGTACTGGCACTTGG
384 GGTTCT-GGCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
2281777 CCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTG
448 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
2281842 AGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
513 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
2281907 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCT-AATTTTTTTTGTGCATGTCAAAAGAAATAC
578 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATAC
* * * * * * *
2281971 AAGGATCATGTCTACCAAGTTTTGGGCCAAAACGCCTTCTAAAAAAATTTTAAAAAAATCTCAAA
642 AAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAA
** *
2282036 TAGTAAAATGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
707 CCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
*
2282101 AAGGCTTAAGGGAACCATTGTATGAATTTACAAGCCCATAAAAATGGCATTGGCATGGCAAAAAA
772 AAGGCTTAAGGG-ACAATTGTATGAATTTACAAG-CCATAAAAATGGCATTGGCATGGC-AAAAA
* *
2282166 TATGAAGATGTGCCTAAA-CCA-CTA-CACCCTATCGATCCACGGCTTGTGCATCCCGCC
834 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
2282223 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
1 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
* * * * * ** *
2282288 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAAGATCGGCAGCCACATAGGAGG
66 ATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTATGGCAGCAAGATTGGCAG-CACGCAGGGGG
* * * * *
2282353 GCCCCGATCGACCCCCAGCTTGTGCAATCCTG-CCCTCTGGCGGCTGAAC-CCC-CACG-T--TT
130 GACCCGA-CGATCCCCGGCTTGTGC-ATCCTGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCATT
** * * * *
2282412 TTGTGGGTCGACTTAGGCCATAATGGGAGTT-ATT-CCA-T-TATGCATATGGAG-TCATT-CCA
193 TCATGGGTTGACTTAGG-CAT-A-CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
2282471 GTGTAAGTTTCGGACCGAC-AAGGG-T-TAGGTGC-CATGATGGAAG-TCCGCAGAGCATGGTGC
255 GTGTAAG-ATCGGACCGACTGAGGGTTGTGGGTGCACATGCTGG--GCT-CG--G-GCAT-GTGC
** * * * *
2282531 -GGTGTTGCATTTTTTTTTCTGCTTC-GGGCACCATCGTCGGAGCATCTTCGG-GAACCTGACCG
312 TGGTGCCGCA-TTTTTTTT-TGC-CCGGGGCACCATCGCCGGAGCATCATCGGAGAACTTGACCG
* *
2282593 -CGGCA-T-GCGTTC-GGCGATTAGGGGGGTGGGGGGGTGTGCGCACATGATGTGC-AT-GGTGC
374 ACGGCATTGGGGTTCTGGCGATT-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
2282652 AGAG-A-TTGG-CCTTATA-TGGCCCCGTAT-CCT-ATCAAACCT-GAGAACTC-CA--CCCTT-
438 TG-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
2282706 AGGAGCATTTGAGATTTTACAGG-TTGCTG-CAGTAGCCATT-AAGT-TCT-AAAT-GGGACACT
502 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
2282765 TTTTTCAAATGGTCACAAAATCCTGTAACACTTCGAGTTTTTAGCTGAATATTTTTGTGCACGCC
567 TTTTTCAAATGGTCACAAAATCCTGT-ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
2282830 AACAAAAATACAAAGATCATGTCTACCAAGTGTGGGGCCAAAACTCCTCCTGAAAAAATTTTAAA
631 AAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * * * **
2282895 AAAATCTCGAACCATAAAAGGTTTGGAAAAGCGTGAAAAATAGAAAACTTGTCGTCTTGCCATGA
696 AAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
2282960 AACTTCACATGAATGCTTAAAGGACGATTGTATGAATTTAAAAGCCATAAAAATGGCAATGGCAT
761 AACTTCACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
2283025 GGCAGAAATATGAAGATTTTCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCC
826 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
2283090 -AC
891 GTC
* * *
2283092 TTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTT
1 -TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTT
* * * * *
2283157 CATTCCCAGTCTAAGATTAGACCGGACAGAGGGTTATGGCAAC-AGAATTGGCAGCATGCAGAGG
65 CATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTATGGCAGCAAG-ATTGGCAGCACGCAG-GG
* * * * **
2283221 GGGACCCGACCGATCCCTGGCTTGCGCATCCTGCTCCTCTGGCCAGCTGAGTGCCCGCAAACTCA
128 GGGACCCGA-CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCA
* * * *
2283286 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGCACACGGAGTTCATTTCCAG
191 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * **
2283351 TGTAAGATCAGACCAGACAGAGGGTTGTGGGTGCATATGCTAAGCTCGGGCATGTGCTGGTGCCG
256 TGTAAGATCGGACC-GACTGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** * * * * * *
2283416 CATTCTTTTTTCGCCCGGGGCACCATCGCTAGATCATCGTCGAAGAACCTGACCGGCAGCATTGG
320 CATT-TTTTTTTGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACTTGACCGACGGCATTGG
* * *
2283481 AGTTCTGGCGATTGGGGGG-GCAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGG
384 GGTTCTGGCGATTGGGGGGCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
2283545 CCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTG
448 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
2283610 AGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
513 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* ** * * * * *
2283675 GTCACAAAATCATACACACTTCGAGGTTTTAGCTAAAATATTTTGTGCATGCCAACAAAAATACA
578 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * * * *
2283740 AGGATCATGTATTCCAAGTGCGAGG-CAGAAACTCCTTTTGAAAAAATTTTAAAAAAATCCCGAA
643 AGGATCACGTCTACCAAGTGTGGGGCCA-AAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAA
* * * * *
2283804 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCTTGAAGCTTCACATG
707 CCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
* * * *
2283869 AAGGCTTAAGGGACCATTGTATGAATTTACATGCCACAAAAATGGCATTGGCATGGCAGAAATAT
772 AAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATAT
* * * *
2283934 AAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGCGCATCTCGT-
837 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
2283990 TCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
1 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
* * * * * * *
2284055 ATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATTGACAACACACAGGGGGG
66 ATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTATGGCAGCAAGATTGGCAGCACGCAGGGGGG
* * * * * *
2284120 ACCCAATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGTACACTCGTTC
131 ACCCGA-CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCATTT
* ** *
2284185 CGTGCATTGACTTAGGCATACGGAGTTCATTCCC-GTCTAAGCATACAGAGTTCATTCCCAGTGT
194 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGT
* * * * * *
2284249 AAGATCAGACCGAACCGAGGGTTGTGGGTGCACATGTTGGGCTAGTGCATGTGCTGGTGCCACAT
259 AAGATCGGACCG-ACTGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * * *
2284314 TTTTTTTTCACCCGGGGCACCATCGCCAGAGCATCACCGAAGAA-TCTGACCGGCGGCATTAGGG
323 TTTTTTTT-GCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACT-TGACCGACGGCATTGGGG
* * * * * * *
2284378 TTCCGGTGATTGGGGGGCGGCGGGGTGTACGCACGTGATGTACGATGGGTGCCGGTACTTGGCCC
386 TTCTGGCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
2284443 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCA-CCCCTTAAAGAGCATTTGAGA
451 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
2284507 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTC
516 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
2284572 ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATGCAAGA
581 ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * * * *
2284637 ATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTATGAAAAAATTTTAAAAAAATCTCGAACCGT
646 ATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGT
* * *
2284702 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACATGAAGG
711 AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
*
2284767 CTTAAGGGACCAATTGTTTGAAATTTACAAGCCATAAAAATGGCATTGGCAT-GCAAAAATATGA
776 CTTAAGGGA-CAATTGTATG-AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGA
*
2284831 AGATGTG-CT-AACCCA-CTATCCA-GCTATCGAT-CACGGCTTGCGC-TCCCGTC
839 AGATGTGCCTAAACCCACCTA-CCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
2284881 TCTCTGGCC-GCGTAGTG-CC-CCCG-CCGCTCGTTTCGTCAATTGG-TTAGGCATACGGAGTTC
1 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
* * * * * *
2284941 ATTCCCAGTCT-AG-TCAGACCGGA--GAGGGTTGTGGCTGC-AGA-TAGTAGCAAG-AGAGGGG
66 ATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTATGGCAGCAAGATTGGCAGCACGCAG-GGGG
* * * * ** *
2284999 CACCC-AGTGAT-CCC-GCTTG-GCAT-CTACCCCTCT-GTCG-TGA--G-CCGCTTGC-C-TGG
130 GACCCGA-CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCAT-T
* * *
2285052 TCAAT-GGTTGACTTAGGC-TACGGAGTTCATT-CTA-TCTAAG-A-AC-GA-TTTA-ACCCA--
193 TC-ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * *
2285106 GAAAGA-CGATACCG---GAACGGG-TAT--GTG-AC-T--TTGGCT--GGCATGTGCTGGTGCC
257 GTAAGATCG-GACCGACTG-A-GGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * * *
2285158 GTATTTTTTTTT-CAGCCTGGGCA-CATCGTCGGAGCATC-GCAGAGAACATGACCGACTGCATT
319 GCATTTTTTTTTGC--CCGGGGCACCATCGCCGGAGCATCATCGGAGAACTTGACCGACGGCATT
* * * *
2285220 -GGGTTCCGAGTGATT-GGGGGCGGTGGGGGGTGTGCACACATGATGTGCGATGGGTACTGGTAC
382 GGGGTTCTG-GCGATTGGGGGGC-G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
2285283 TTGGCCCTTATATTGG-CCCCTATCCCTCATTAAA-CTCGAGAACTCACACTCCCTTAAAGAGCA
444 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
2285346 TTTGAGA-TTTACAAG-TTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCA
509 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
2285409 AATGGTCACAAAATCGTGTACACTTCGTGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAA
574 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* *
2285474 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCC
639 TACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
* * * *
2285539 AAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCAC
704 GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
2285604 ATGAAGGCTTAAGGG-CTCATTGTATGAATTTACAGGCCATAAAAATGGCATTGTCATGGTAAAA
769 ATGAAGGCTTAAGGGAC-AATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAA
2285668 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
833 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
2285729 TCTCTGGCCGGCGTAATGCCCGCCCACCCGCTCGTTTCATCGATTGGCTTAGGTATACGGAATTC
1 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
** * * *
2285794 ATTCCCAGTCTAAGATCAGATTGGA-TCGAAGGTTGTGGCAGCAAGATTGGCAGCATGCAAGGGG
66 ATTCCCAGTCTAAGATCAGACCGGACT-GAAGGTTATGGCAGCAAGATTGGCAGCACGCAGGGGG
* * * * *
2285858 GATCCAACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCATT
130 GACCCGA-CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCATT
* *
2285923 TCATGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTG
193 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTG
* * *
2285988 TAAAATTGGACCGAACTGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA
258 TAAGATCGGACCG-ACTGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC-
* * * * *
2286053 ATTTTTTTTTGCTCGGGGCACAATCGTCGGAGCATCGTCGGAGAACTTGATCGACGGCATTGGGG
321 ATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACTTGACCGACGGCATTGGGG
*
2286118 TTCTGGCGATTGGGGGG-GCGGGGGGTGTGCGCACCTGATGTGCGATGGGTGCTGGTA------C
386 TTCTGGCGATTGGGGGGCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
2286176 C------TGGCCCCTTATCCCTCATTAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
450 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
2286235 ATTTTACAGGTTT-CTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
515 ATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
2286299 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
579 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* *
2286364 GGATCACATCTACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCCGAACC
644 GGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACC
** *
2286429 GTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG----G--------CATGAA
709 GTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
* * * *
2286482 GGCTTAAGGGACAACTATATGAATTTACAAGCCATAAAAATGGCATTGGCATAGCAAAAATATGG
774 GGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGA
* *
2286547 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCC
839 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* ** * * *
2286602 TCTCTGGCTGTTGTAGTGCCCGCCCACCCGCTCAATTT-GTC-AGTTGGCTTAGGCATACAGAGT
1 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC-GTTTCGTCGA-TTGGCTTAGGCATACGGAGT
* * * * * *
2286665 TCATTCCCAGTC-AAGATCGGATCGGATTGAAGGTTATGGTAGCAAGATCGGCAGCACGTAGGGG
64 TCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTATGGCAGCAAGATTGGCAGCACGCAGGGG
*
2286729 GGTACCTGACAGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCA
129 GG-ACCCGAC-GATCCCCGGCTTGTGCATCCTGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCA
* * *
2286794 TTTCATTGGTTGACTTAGGCATACGGGGTTCCTTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
191 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
2286859 AGTAAGATCGGACCGGGCTGAAGGTTATGGGTGCACATGCTGGGCTCGAGTATGTGCTGGTGCCG
256 TGTAAGATCGGACC-GACTGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
**
2286924 CATTTCTTTTTTGCCCGGGGCATAATCGCCGGAGCATCATCGGAGAACTTGACCGACGGCATTGG
320 CATTT-TTTTTTGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACTTGACCGACGGCATTGG
* * *
2286989 GGTTCTGGCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTAGTACCTGGC
384 GGTTCTGGCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
2287054 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
449 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
2287119 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
514 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
2287184 TCACAAAATCCTGTACACTACGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAA
579 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* *
2287248 GGATCACGTCTACCAAGTGTGGGGCCAAAACTGCTTCTGAAAAAATTTTTAAAAAATCCCGAACC
644 GGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACC
* * * * *
2287313 ATAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACATGAA
709 GTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
* * * *
2287378 GGGTTAAGGGACAACTATATGAATTTACAAGCCATAAAAATGGCATTGGCATAGCAAAAATATGA
774 GGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGA
*
2287443 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
839 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
2287498 TCTCTGGCTGGTGTAGTGCCCGCCCGCCCGCTCGTTTCCTCGATTGGCTTAGGCATACGGAGTTC
1 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
** * * * * ***
2287563 ATTCCCAGTCTAAGATTGGATCGGATTGAAGGTTATGGTAACAAGATCAACAGCACGCAGGGGGG
66 ATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTATGGCAGCAAGATTGGCAGCACGCAGGGGGG
*
2287628 ACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGTGCCCGCACGCTCATTT
131 ACCCGA-CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCATTT
* * * *
2287693 CATGGGTTGACTTTGGCATACGGGGCTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAGTGT
194 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGT
* * * * *
2287758 AAGATCAGACCAGA-TCGAGGGTTGTAGGTGCACATGCTGCGCTTGGGCATGTGCTGGTGCCAC-
259 AAGATCGGACC-GACT-GAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * *
2287821 TTTTTTTTTCACCCGGGGCACCATCGCCGGAGCATCACCCGAGAACTTGACCGACGGCATTGGGG
322 TTTTTTTTT-GCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACTTGACCGACGGCATTGGGG
* ** *
2287886 TTCCGGCGATT-GGGGG-GTAGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
386 TTCTGGCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
2287949 TTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGA
451 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
2288014 TTTTACAGGTTTGCTAG-CAGTAGCCATTAAAGTGCCTGAAATGGTGACACTTCTTTCAAA
516 TTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
2288074 AATTGTGAAA
Statistics
Matches: 5064, Mismatches: 573, Indels: 432
0.83 0.09 0.07
Matches are distributed among these distances:
842 30 0.01
843 25 0.00
844 245 0.05
845 43 0.01
846 73 0.01
847 73 0.01
848 48 0.01
849 7 0.00
850 7 0.00
851 3 0.00
852 19 0.00
853 28 0.01
854 5 0.00
855 9 0.00
856 3 0.00
857 16 0.00
858 4 0.00
859 23 0.00
860 5 0.00
861 7 0.00
862 8 0.00
863 6 0.00
864 11 0.00
865 3 0.00
866 8 0.00
867 37 0.01
868 39 0.01
869 74 0.01
870 342 0.07
871 25 0.00
872 73 0.01
873 472 0.09
874 25 0.00
875 37 0.01
876 27 0.01
877 45 0.01
878 47 0.01
879 37 0.01
880 27 0.01
881 54 0.01
882 58 0.01
883 54 0.01
884 167 0.03
885 390 0.08
886 54 0.01
887 60 0.01
888 29 0.01
889 34 0.01
890 52 0.01
891 60 0.01
892 45 0.01
893 253 0.05
894 316 0.06
895 339 0.07
896 483 0.10
897 293 0.06
898 274 0.05
899 33 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTATGGCAGCAAGATTGGCAGCACGCAGGGGGG
ACCCGACGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCATTTCA
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAA
GATCGGACCGACTGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
TTTTTGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACTTGACCGACGGCATTGGGGTTCTG
GCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
GTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAA
GTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
GGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
Found at i:2287737 original size:26 final size:26
Alignment explanation
Indices: 2287708--2287760 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2287698 GTTGACTTTG
*
2287708 GCATACGGGGCTCATTCCCAGTATAA
1 GCATACGGAGCTCATTCCCAGTATAA
* *
2287734 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGCTCATTCCCAGTATAA
2287760 G
1 G
2287761 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTATAA
Found at i:2288423 original size:26 final size:26
Alignment explanation
Indices: 2288393--2288445 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2288383 GTTGAAATAG
2288393 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2288419 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2288445 G
1 G
2288446 ATCAGAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2289332 original size:26 final size:26
Alignment explanation
Indices: 2289302--2289354 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2289292 GTTGACTTAG
2289302 GCATAC-GAGGTTCATTCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
*
2289328 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2289354 G
1 G
2289355 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2290229 original size:26 final size:26
Alignment explanation
Indices: 2290199--2290251 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2290189 GCTGACTTAG
*
2290199 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2290225 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2290251 G
1 G
2290252 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2290283 original size:897 final size:908
Alignment explanation
Indices: 2288372--2290284 Score: 2608
Period size: 909 Copynumber: 2.1 Consensus size: 908
2288362 CCAGGCTCTT
** *
2288372 TCGTTTCATGGGTTGAAATAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
2288437 CAGTGTAAGATCAGAA-CGGACGGAGGGTTGCGGGTGCACATGTTGGGCTCGAGCATGTGCTGGT
66 CAGTGTAAGATC-GAACCGGACTGAGGGTTGCGGGTGCACATGCTAGACTCAAACATGTACTGGT
* * ** *
2288501 GCCACATTTTTTTTCGCTCGGGGCACCATCGACGGAGCATCGTCGGAGAACCTGACTGGCAGCAT
130 GCCACATTTTTTTTCGCTCGAGGCACCATCGACGAAGCATCAACGGAGAACCTGACCGGCAGCAT
* ** * *
2288566 TGGGGTTCCGGCAATTGGGGGGGCGAAGGGGTGTGCTCACTTGATGTGCGATGGGTGCTGGTACT
195 TCGGGTTCCGGCAATTGGGGGACCGAAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACT
* * *
2288631 TGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCAT
260 TGGCCCTTATATTGGCCCCATAACCCTCATCAAACCTTCAGAACTCACACCCCCTTAAAGAGCAT
* *
2288696 TTGAGATTTTACAGGTTTGCTAGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAA
325 TTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTCTTTCAA
* * *
2288761 ATGGTCACAAATCTTGTACACTCGAGTTTTAGCTGAATTTTTTTTTGCATGCCACAAAATACAAG
390 ATGGTCACAAATCTTGTACACTCGAGTTTTAGCTGAATTTTTTTCTGCATGCCAAAAAATACAAA
* * * *
2288826 GATCATGTCTACCAAGTGTTGGGGCCAAAAACTCCTCTGAAAATTTTAAAAAAATCCTGACCATC
455 GATCACGTCTAACAAGTGTTGGGGCCAAAAACTCCTCTAAAAATTTTAAAAAAATCCTGA-CACC
*
2288891 GTAAAAAGTTTCAAAAAATTAATGGTAAAATAGAAAAAACAGTCCATCATGCCAATGAAACTTCC
519 GTAAAAAGTTTCAAAAAATTAATGGAAAAATAGAAAAAACAGTCCATCATGCCAATGAAACTTCC
2288956 ACGATGAAGGCTTAAGGGACCATTTATGATTTACAAGCCATAAAAATGGCAATTAGCGATGGCAG
584 ACGATGAAGGCTTAAGGGACCATTTATGATTTACAAGCCATAAAAATGGCAATTAGCGATGGCAG
* *
2289021 AAATATGAAGATGTACCTTAAACACCACCTACCACCACTATTCGATGCCACGGCTTCGCCATCCT
649 AAATATAAAGATGTACCTTAAACACCACCTACCACCACTATTCGATGCCACGGCTTCGCCATCCC
* * * *
2289086 GTCTCTCTGGCCGGCGTAGTGCCTCGCCCGTCCGCTCATTTTCCTCGGTTGGCTAGGCATACGGA
714 GTCTCTCTGGCCGACGCAGTGCCTCGCCCGCCCGCTCATTTTCCTCGGTTGGCTAGGCATACAGA
* * *
2289151 GTTCATTCCCAGTCTAAGATCGGACCAGAATTGAGGGTTACCAGCAACAGGATCGACAGCACGCA
779 ATTCATTCCCAGTCTAAGATCGGACCAGAATCGAAGGTTACCAGCAACAGGATCGACAGCACGCA
* * * * * * **
2289216 GGGGGGACTCGACTGATCCCCGGCTTGTGCATCCTGCCTCTCTGGCCGGCTGAGTGCCCGTACGC
844 GGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCACCCGTACGC
2289281 TCGTTTCATGGGTTGACTTAGGCATAC-GAGGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
1 TCGTTTCATGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
*
2289345 CCAGTGTAAGATC-AGACCGGACTGAGGGTTCCGGGTGCACATGCTAGACTCAAACATGTACTGG
65 CCAGTGTAAGATCGA-ACCGGACTGAGGGTTGCGGGTGCACATGCTAGACTCAAACATGTACTGG
* * * * *
2289409 TGCCGCATTTTTTTTCGCTCGAGGCACCATTGCCGAAGCATCAACGGATAACCTGACCGGTAGCA
129 TGCCACATTTTTTTTCGCTCGAGGCACCATCGACGAAGCATCAACGGAGAACCTGACCGGCAGCA
* *
2289474 TTCGGGTTCCGGCGATTGGGGCGACCG-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTA
194 TTCGGGTTCCGGCAATTGGGG-GACCGAAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTA
* *
2289538 CTTGGCCCTTATATTGGCCCCATATCTCTCATCAAACC-TCAGAACTCACACCCCCTTAAAGAGC
258 CTTGGCCCTTATATTGGCCCCATAACCCTCATCAAACCTTCAGAACTCACACCCCCTTAAAGAGC
*
2289602 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTC
323 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTCTTTC
2289667 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAAAAAAA
388 AAATGGTCAC-AAATCTTGTACAC-TCGAG-TTTTAGCTGAATTTTTTTCTGCATGCC--AAAAA
* ** *
2289732 ATACAAAGATCACGTCTAAGAAGTG-TGGGG-TGAAAACTCCTTCTAAAAAATTTTTTAAAAAAT
448 ATACAAAGATCACGTCTAACAAGTGTTGGGGCCAAAAACTCC-TCT-AAAAA-TTTTAAAAAAAT
** ** * *
2289795 -CTCGA-ACCGTAAAAAGTTTC-AAAAA-TCGT-GAAAAATA-AAAAATGAGT-CGTCTTGCC-A
510 CCT-GACACCGTAAAAAGTTTCAAAAAATTAATGGAAAAATAGAAAAAACAGTCCATCATGCCAA
*
2289852 TGAAACTT-CAC-ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTC-AT
574 TGAAACTTCCACGATGAAGGCTTAAGGGACCATT-TATG-ATTTACAAGCCATAAAAATGGCAAT
* * *
2289914 TGGC-ATGGTAGAAATATAAAGATGTGCC-TAAAC-CCACCTACCACC-CTATT-GAT-CCACGG
637 TAGCGATGGCAGAAATATAAAGATGTACCTTAAACACCACCTACCACCACTATTCGATGCCACGG
* * *
2289973 CTT-GCGCATCCCGTTTTTCTGGCCGACGCAGTG-CTCGCCCGCCCGCTCA-TTTCGTCGGTTGG
702 CTTCGC-CATCCCGTCTCTCTGGCCGACGCAGTGCCTCGCCCGCCCGCTCATTTTCCTCGGTTGG
* * *** * **
2290035 CTTAGGCATACAGAATTCATTCCCAGTCTAAGA-CTGGATC-GGATCGAAGGTT-GTGGTAGTAG
766 C-TAGGCATACAGAATTCATTCCCAGTCTAAGATC-GGACCAGAATCGAAGGTTACCAGCAACAG
* * *
2290097 GATCGGCAGCATGCAAGGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCTGG
829 GATCGACAGCACGC-AGGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGG
2290162 CTAAGCACCCGTACGC
893 CTAAGCACCCGTACGC
* *
2290178 TCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
*
2290243 CAGTGTAAGATCGAACCGGACTGAGGGTTGTGGGTGCACATG
66 CAGTGTAAGATCGAACCGGACTGAGGGTTGCGGGTGCACATG
2290285 TTGGGCTCGG
Statistics
Matches: 890, Mismatches: 93, Indels: 54
0.86 0.09 0.05
Matches are distributed among these distances:
896 16 0.02
897 178 0.20
898 53 0.06
899 31 0.03
900 3 0.00
901 5 0.01
902 12 0.01
903 5 0.01
904 42 0.05
905 12 0.01
906 30 0.03
907 8 0.01
908 107 0.12
909 273 0.31
910 10 0.01
911 39 0.04
912 22 0.02
913 31 0.03
914 13 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (908 bp):
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTGTAAGATCGAACCGGACTGAGGGTTGCGGGTGCACATGCTAGACTCAAACATGTACTGGTG
CCACATTTTTTTTCGCTCGAGGCACCATCGACGAAGCATCAACGGAGAACCTGACCGGCAGCATT
CGGGTTCCGGCAATTGGGGGACCGAAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCATAACCCTCATCAAACCTTCAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTCTTTCAAA
TGGTCACAAATCTTGTACACTCGAGTTTTAGCTGAATTTTTTTCTGCATGCCAAAAAATACAAAG
ATCACGTCTAACAAGTGTTGGGGCCAAAAACTCCTCTAAAAATTTTAAAAAAATCCTGACACCGT
AAAAAGTTTCAAAAAATTAATGGAAAAATAGAAAAAACAGTCCATCATGCCAATGAAACTTCCAC
GATGAAGGCTTAAGGGACCATTTATGATTTACAAGCCATAAAAATGGCAATTAGCGATGGCAGAA
ATATAAAGATGTACCTTAAACACCACCTACCACCACTATTCGATGCCACGGCTTCGCCATCCCGT
CTCTCTGGCCGACGCAGTGCCTCGCCCGCCCGCTCATTTTCCTCGGTTGGCTAGGCATACAGAAT
TCATTCCCAGTCTAAGATCGGACCAGAATCGAAGGTTACCAGCAACAGGATCGACAGCACGCAGG
GGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCACCCGTACGC
Found at i:2290617 original size:26 final size:26
Alignment explanation
Indices: 2290588--2290640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2290578 GTTGACTTAG
*
2290588 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2290614 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2290640 G
1 G
2290641 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2290637 original size:389 final size:388
Alignment explanation
Indices: 2289920--2290688 Score: 1026
Period size: 389 Copynumber: 2.0 Consensus size: 388
2289910 TCATTGGCAT
* *
2289920 GGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCC
1 GGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTGCGCATCCC
*** * * *
2289985 GTTTTTCTGGCCGACGCAGTGCTCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAA
66 ACCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAA
* * * * * * *
2290050 TTCATTCCCAGTCTAAGACTGGATCGGATCGAAGGTTGTGGTAGTAGGATCGGCAGCATGCAAGG
131 TTCATTCCCAGTCTAAGACTAGACCAGACCAAAGGTTGTGGCAGTAGGATCGGCAGCA-GCAAGA
* *
2290115 GGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCTGGCTAAGCACCCGTACGCTC
195 GGGGACCCGACCGATCCCCGACTTGCACATCCTGCCCCTCTGGCTGGCTAAGCACCCGCACGCTC
* *
2290180 GTTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
260 GTTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
* * *
2290245 GTGTAAGATC-GAACCGGACTGAGGGTTGTGGGTGCACATGTTGGGCTCGGGCATGCGTTGGTAA
325 GTGTAAGATCAG-ACCGGACCGAAGGTTGCGGGTGCACATGTTGGGCTCGGGCATGCGTTGGTAA
* ** * *
2290309 GGTAGAAATATGAAGATGTGCCTAAACTGACCTACCACCCTATCGATCCACGCCTTGTGCATCCT
1 GGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTGCGCATCCC
* * * **
2290374 ACCTCTCTGGCC-AGCGTAGTGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGA
66 ACCTCTCTGGCCGA-CGCAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGA
* *
2290438 GTTCATTCCTAGTCTAAGA-TCAGACCAGACCAAAGGTTGTGGCAGTAGGATCGGCAGCA-CACA
130 ATTCATTCCCAGTCTAAGACT-AGACCAGACCAAAGGTTGTGGCAGTAGGATCGGCAGCAGCA-A
** * * * ** * *
2290501 GAAGGGGACCCGGTCGATCCCCGGCTTGTACATCCTGCCCCTCTGG-TCGGCTGAGTGCCTGCAT
193 G-AGGGGACCCGACCGATCCCCGACTTGCACATCCTGCCCCTCTGGCT-GGCTAAGCACCCGCAC
* *
2290565 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
256 GCTCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
*
2290630 CCCAGTGTAAGATCAGATCGGACCGAAGGTTGCGGGTGCACATGTTGGGCTCGGGCATG
321 CCCAGTGTAAGATCAGACCGGACCGAAGGTTGCGGGTGCACATGTTGGGCTCGGGCATG
2290689 TACTGGTGCC
Statistics
Matches: 328, Mismatches: 46, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
387 2 0.01
388 5 0.02
389 320 0.98
390 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (388 bp):
GGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTGCGCATCCC
ACCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAA
TTCATTCCCAGTCTAAGACTAGACCAGACCAAAGGTTGTGGCAGTAGGATCGGCAGCAGCAAGAG
GGGACCCGACCGATCCCCGACTTGCACATCCTGCCCCTCTGGCTGGCTAAGCACCCGCACGCTCG
TTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
TGTAAGATCAGACCGGACCGAAGGTTGCGGGTGCACATGTTGGGCTCGGGCATGCGTTGGTAA
Found at i:2291503 original size:26 final size:26
Alignment explanation
Indices: 2291473--2291525 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2291463 GTTGACTTAG
2291473 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
*
2291499 GCATATAGAGTTCATTCCCAGTGTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
2291525 G
1 G
2291526 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:2292389 original size:26 final size:26
Alignment explanation
Indices: 2292360--2292412 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2292350 GTTGACTTAG
2292360 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
2292386 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2292412 G
1 G
2292413 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2292959 original size:898 final size:894
Alignment explanation
Indices: 2290312--2293474 Score: 4103
Period size: 887 Copynumber: 3.5 Consensus size: 894
2290302 TTGGTAAGGT
** * * **
2290312 AGAAATATGAAGATGTGCCTAAACTGACCTACCACCCTATCGATCCACGCCTTGTGCATCCTACC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
*
2290377 TCTCTGGCC-AGCGTAGTGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTT
66 TCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTT
* * * * *
2290441 CATTCCTAGTCTAAGATCAGACCAGACCAAAGGTTGTGGCAGTAGGATCGGCAGCACACAGAAGG
130 CATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG-GGG
* ** * * * * *
2290506 GGACCCGGTCGATCCCCGGCTTGTACATCCTGCCCCTCTGGTCGGCTGAGTGCCTGCATGCTCGT
194 GGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
* *
2290571 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
259 TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * *
2290636 GTAAGATCAGATCGGACCGAAGGTTGCGGGTGCACATGTTGGGCTCGGGCATGTACTGGTGCCGC
324 GTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTACTGGTGCCAC
* * * *
2290701 ATTTGTTTTTGCCTGGGGCACCAT---CGTCG-A--A---GA-AA-CTGACCGGCGGCATTAGGG
389 ATTT-TTTTTGCCCGGGGCACCATCACCGTAGCATCATCGGAGAACCTGACCGACGACATTAGGG
* * * * * *
2290755 TTCCCATGATTGAGGTGCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGTTGGTACTTGGCCC
453 TTCCGACGATTGAGGGGTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
2290820 TTATGTTGGCCCCCTAT-CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
518 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* **
2290884 TTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGTTTTTTTCAAATGGTC
583 TTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
2290949 ACAAAA-TCATGTACACTTCGAGTTTTTAG-TTAACTTTTTTTGTGCATGCCAAAAAAAATACAA
648 ACAAAATTC-TGTACACTTCGAGTTTTTAGCTGAACTTTTTTTGTGCATGCC-AAAAAAATACAA
* *
2291012 GGATCACGTCTACCAAGTTTGGAGCCAAAATTCTTTCTGAAAAAATTTTAAAAAAATCCTAAACC
711 GGATCACGTCTACCAAGTTTGGAGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAAAT-CTAAACC
2291077 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
775 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
* * *
2291142 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTAGCAGGGCA
840 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG-A
** * *
2291198 A-AAATATGAAGACATGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGTGCATCCCGCC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* *** * *
2291262 TCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTTGCCGGTTGGCTGAGGCATATGGTGTTC
66 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTC
** * ** * * *
2291327 ATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGTGGTAGCAGGATTGGCAGCAGGCAAGGGGG
131 ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGC-AGGGGG
* * * ** * * *
2291392 GACCC-AGCCGATCCCCAGCTTGCGCATCCTGCCCTTCTTCCCGACTGATCGCCCGCACACCCGT
195 GACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
* * **
2291456 TTCATGGGTTGACTTAGGCATA-TAGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAG
259 TTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * *
2291520 TGTAAGATCGGACCGGACCAAGGGTTGCGGCTGCACTTGCTAGGCTCGAGCATGTACTGGTGCCG
323 TGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTACTGGTGCCA
* * * * * *
2291585 CA-TTTTTTCGCTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGATCGACGACATTAGGG
388 CATTTTTTTTGCCCGGGGCACCATCACCGTAGCATCATCGGAGAACCTGACCGACGACATTAGGG
**
2291649 TTCCGACGA-T------T-GGGGGGTGTGCGTGCATGATGTGCGATGGGTGCTGGTACTTGGCCC
453 TTCCGACGATTGAGGGGTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
2291706 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGA
518 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
2291771 TTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
583 TTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
2291836 ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCGTGCCAAAAAAATTACAAG
648 ACAAAATTCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTTGTGCATGCCAAAAAAA-TACAAG
* *
2291901 GATCACGTATACCAAGTTTGGCA-TCAAAAGTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACC
712 GATCACGTCTACCAAGTTTGG-AGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAAATCT-AAACC
* **
2291965 GAAAAAAG-TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA
775 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
2292029 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGA
840 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGA
* *
2292084 AGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATCCCGCA
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* * * * * * * *
2292149 TCTCTGGCCGACGTAGTGCCCACCCACCCGCTCATTTCGTCAGTTGACTTAGGCATACGAAGTTC
66 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTC
* * * * * * *
2292214 ATTCCCAGTCTAAGATCAGACC-GAATCGAGGGTTGCGACAGTAGGATTGGCAGCATGCAGGGTG
131 ATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGG-G
* * * * * *
2292278 GGACCTGATTGATCCTCGGCTTGCGCATGCAT-CCCCTCTAGCCGACTGAGCGCCCGCATGCTCG
194 GGACCCGATCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
2292342 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
258 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * ** * *
2292407 TGTAAGATCAAACTGGATCGAGGGTTTTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTA
323 TGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTACTGGTGCCA
* ** *
2292472 CATTTTTTTTCGCCCGGGGCACCATCACCGTAGCATCATCGGAGAACCTGACCAACGGTATTGGG
388 CATTTTTTTT-GCCCGGGGCACCATCACCGTAGCATCATCGGAGAACCTGACCGACGACATTAGG
* * *
2292537 GTTCCGGCGATTGGAGGGGTGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGAC
452 GTTCCGACGATT-GAGGGGTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
2292602 CCTTATATTGGCCCCCTATCCCTCATCAAACTTTGAGAACTCACACCCCCTTAAAGGGCATTTCA
516 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
2292667 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
581 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
2292732 TCACAAAATTCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTACATGCCAACAAAAATACA
646 TCACAAAATTCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTTGTGCATGCCAA-AAAAATACA
* ** * *
2292796 AGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTAATGAAAAAATTTTTAAAAAATCTGAAAT
710 AGGATCACGTCTACCAAGTTTGGAGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAAATCT-AAAC
** *
2292861 CGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGA
774 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
* * *
2292926 AGTCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
839 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGA
** *
2292982 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGTCGGCTTGCGCATCCTGCC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* * * * *
2293047 TCTCTGGCCGACGTAGTGCCCGCCCGCTCGCTCGTTTCATCGGTCGGCATAGGTAGATGGAGTTC
66 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTC
* * * * **
2293112 ATTACCAATCTAACATCAGACCAGACCAAGGGTTATGGCAGCAGGATCAACAGCACGCAGGGGGG
131 ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGG
* * * * * *
2293177 ACCCGATCGATCCCCGGCTTGTGCATCTTTCCCCTCTGGCCGGCTGAGCGCCCGCACGGTC-ATT
196 ACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTT
* * *
2293241 CAGTGGGTTGACTGAGGCATACGGAGTTCATTCCTAGTCTAAGCATA-GGAGTTCATTCCCAGTG
261 C-GTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTG
* * * * * * * *
2293305 TAAGATCGGACCGAATCGAGGGTTACAGGTGCACATGCTGGGCTCGAGG-ATGTGCTGCTGCCAT
325 TAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCG-GGCATGTACTGGTGCCAC
** * * * * * *
2293369 ATTTTTTATTGTTCGAGGCACCATCGCCGAAGCATCATCGGAGAACCTGATCGGCGACATTGGGG
389 ATTTTTT-TTGCCCGGGGCACCATCACCGTAGCATCATCGGAGAACCTGACCGACGACATT-AGG
*
2293434 GTTCCGATGATTGAGGGG-GGTAGGGGGTGTGCGCACATGAT
452 GTTCCGACGATTGAGGGGTGG--GGGGGTGTGCGCACATGAT
2293475 ATGTGTTAAC
Statistics
Matches: 1969, Mismatches: 259, Indels: 87
0.85 0.11 0.04
Matches are distributed among these distances:
883 16 0.01
884 2 0.00
885 322 0.16
886 71 0.04
887 565 0.29
888 97 0.05
889 55 0.03
890 1 0.00
892 2 0.00
893 3 0.00
894 23 0.01
895 2 0.00
896 127 0.06
897 215 0.11
898 467 0.24
899 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGG
ACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGT
AAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTACTGGTGCCACAT
TTTTTTTGCCCGGGGCACCATCACCGTAGCATCATCGGAGAACCTGACCGACGACATTAGGGTTC
CGACGATTGAGGGGTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATTCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTTGTGCATGCCAAAAAAATACAAGGATC
ACGTCTACCAAGTTTGGAGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAAATCTAAACCGTAAAA
AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGA
Found at i:2293292 original size:25 final size:26
Alignment explanation
Indices: 2293257--2293308 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
2293247 GTTGACTGAG
*
2293257 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2293283 GCATA-GGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2293308 G
1 G
2293309 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2293544 original size:15 final size:15
Alignment explanation
Indices: 2293526--2293566 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
2293516 ATATTATACG
2293526 AAATACAAAAAAAAT
1 AAATACAAAAAAAAT
*
2293541 AAATAC-CAAAAAAT
1 AAATACAAAAAAAAT
*
2293555 -GATACAAAAAAA
1 AAATACAAAAAAA
2293567 TAGAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
13 4 0.18
14 12 0.55
15 6 0.27
ACGTcount: A:0.76, C:0.10, G:0.02, T:0.12
Consensus pattern (15 bp):
AAATACAAAAAAAAT
Found at i:2293553 original size:14 final size:14
Alignment explanation
Indices: 2293526--2293568 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
2293516 ATATTATACG
2293526 AAATACAAAAAAAAT
1 AAATAC-AAAAAAAT
*
2293541 AAATACCAAAAAAT
1 AAATACAAAAAAAT
*
2293555 -GATACAAAAAAAT
1 AAATACAAAAAAAT
2293568 A
1 A
2293569 GAAAAAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 11 0.46
14 7 0.29
15 6 0.25
ACGTcount: A:0.74, C:0.09, G:0.02, T:0.14
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:2294992 original size:17 final size:17
Alignment explanation
Indices: 2294972--2295038 Score: 66
Period size: 17 Copynumber: 4.0 Consensus size: 17
2294962 CTAAGTTTTT
2294972 AAAACCCCTAAAAATCC
1 AAAACCCCTAAAAATCC
*
2294989 AAAATCCCCT-AAAATTC
1 AAAA-CCCCTAAAAATCC
* *
2295006 AAAACCTCTTAAAATCC
1 AAAACCCCTAAAAATCC
**
2295023 -AAAGTCCTAAAAATCC
1 AAAACCCCTAAAAATCC
2295039 TAAAGACAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
16 16 0.39
17 20 0.49
18 5 0.12
ACGTcount: A:0.49, C:0.30, G:0.01, T:0.19
Consensus pattern (17 bp):
AAAACCCCTAAAAATCC
Found at i:2296855 original size:33 final size:33
Alignment explanation
Indices: 2296812--2297155 Score: 396
Period size: 33 Copynumber: 10.5 Consensus size: 33
2296802 ATAAAATAAA
* *
2296812 ATTTAAGCCCATTTTATCTGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* *
2296845 TTTTAAGCCCAGTTTATCTGGCCATCAATGAAA
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
2296878 ATTTAAGCCCAGTTTATCTGGCC-TCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATC-AATGAAG
* *
2296911 ATTTAAGCCCAATTTATCTGGCCATCAATG-AT
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* *
2296943 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* * *
2296976 CTTGAAGCCCAGTTTATCTAGCTC-TCAATGAA-
1 ATTTAAGCCCAGTTTATCTGGC-CATCAATGAAG
* *
2297008 ACTTTAAGCCCAGTTTATCTGACCATTAATGAAG
1 A-TTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* * *
2297042 CTTTAAGCCCAGTTCATCTGGCCATCAATGAGG
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* * * *
2297075 TTTTAAACCTAGTTTATCTGG-CTTCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATC-AATGAAG
* *
2297108 ATTTAAGCCCAGTTTAGCTGGCCTTCAAT-AA-
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
*
2297139 ATTTAAGCCAAGTTTAT
1 ATTTAAGCCCAGTTTAT
2297156 TTAGCCCCAA
Statistics
Matches: 263, Mismatches: 39, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
31 15 0.06
32 36 0.14
33 205 0.78
34 7 0.03
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (33 bp):
ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
Found at i:2297047 original size:131 final size:131
Alignment explanation
Indices: 2296812--2297155 Score: 441
Period size: 131 Copynumber: 2.6 Consensus size: 131
2296802 ATAAAATAAA
* * *
2296812 ATTTAAGCCCATTTTATCTGGCCATTAATGAAGTTTTAAGCCCAGTTTATCTGGCCATCAATGAA
1 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATG-A
* *
2296877 AATTTAAGCCCAGTTTATCTGGCCTCAAATGAAGATTTAAGCCCAATTTATCTGGCCATCAATGA
65 AATTTAAGCCCAGTTTATCTGACCTCAAATGAAGATTTAAGCCCAATTCATCTGGCCATCAATGA
2296942 -T
130 GT
* * *
2296943 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGCTTGAAGCCCAGTTTATCTAGCTC-TCAATGA
1 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGC-CATCAATGA
* * *
2297007 AACTTTAAGCCCAGTTTATCTGACCAT-TAATGAAGCTTTAAGCCCAGTTCATCTGGCCATCAAT
65 AA-TTTAAGCCCAGTTTATCTGACC-TCAAATGAAGATTTAAGCCCAATTCATCTGGCCATCAAT
2297071 GAGGT
128 GA-GT
* * *
2297076 -TTTAAACCTAGTTTATCTGG-C-TTCAAATGAAGATTTAAGCCCAGTTTAGCTGGCCTTCAAT-
1 ATTTAAGCCTAGTTTATCTGGCCATT--AATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATG
*
2297137 AAATTTAAGCCAAGTTTAT
64 AAATTTAAGCCCAGTTTAT
2297156 TTAGCCCCAA
Statistics
Matches: 189, Mismatches: 16, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
130 20 0.11
131 117 0.62
132 51 0.27
133 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (131 bp):
ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATGAA
ATTTAAGCCCAGTTTATCTGACCTCAAATGAAGATTTAAGCCCAATTCATCTGGCCATCAATGAG
T
Found at i:2297948 original size:23 final size:23
Alignment explanation
Indices: 2297918--2297980 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
2297908 ACCCGAGTCA
2297918 ATTCTGTAAGACCTCCGGGCATG
1 ATTCTGTAAGACCTCCGGGCATG
* *
2297941 ATTCTGTAAGACCTTCGAGCATG
1 ATTCTGTAAGACCTCCGGGCATG
*
2297964 ATT-TCTAAGACCTCCGG
1 ATTCTGTAAGACCTCCGG
2297981 CATAATTTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
22 11 0.31
23 24 0.69
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (23 bp):
ATTCTGTAAGACCTCCGGGCATG
Found at i:2298106 original size:22 final size:23
Alignment explanation
Indices: 2298048--2298109 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
2298038 TATTCCAGTC
* *
2298048 GATTCTGTAAGACCTCCGGGCAT
1 GATTCTATAAGACCTCCAGGCAT
*
2298071 GATTCTATAAGACCTCCAGGTAT
1 GATTCTATAAGACCTCCAGGCAT
2298094 GATTCT-TAAGACCTCC
1 GATTCTATAAGACCTCC
2298110 GAGCGTAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 10 0.28
23 26 0.72
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (23 bp):
GATTCTATAAGACCTCCAGGCAT
Found at i:2298180 original size:133 final size:132
Alignment explanation
Indices: 2297832--2298195 Score: 470
Period size: 131 Copynumber: 2.8 Consensus size: 132
2297822 AAGATTTTGA
* * * * * * *
2297832 GATTTGTAAGACCTCTAGGCATAATTTTGATTTACGGTGTTGTCCCGATCGATT-TTTAT-TTCT
1 GATTTCTAAGACCTC-CGGCATAATTTTGATTCACGATGTTATCCCGATCGATTCCTTATCTTTT
* * * *
2297895 GACTTGCGATGTTA-CCCGAGTCAATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTTCGA
65 GACTTACGATGTTATCCC-AGTCGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCCGA
2297959 GCAT
129 GCAT
** *
2297963 GATTTCTAAGACCTCCGGCATAA-TTTGATTCGTGATGTTATCCCGATCGATTCCTTATCTTTCG
1 GATTTCTAAGACCTCCGGCATAATTTTGATTCACGATGTTATCCCGATCGATTCCTTATCTTTTG
* *
2298027 ACTTACGATTTTATTCCAGTCGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCC-AGG
66 ACTTACGATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCCGA-G
*
2298091 TAT
130 CAT
*
2298094 GA-TTCTTAAGACCTCCGAGCGTAATTTTGATTCACGATGTTATCCCGATCGATTCCTTATCTTT
1 GATTTC-TAAGACCTCCG-GCATAATTTTGATTCACGATGTTATCCCGATCGATTCCTTATCTTT
*
2298158 TGACTTACGATGTTATCCCAGTCGATTTTGTAAGACCT
64 TGACTTACGATGTTATCCCAGTCGATTCTGTAAGACCT
2298196 TCGGACATAA
Statistics
Matches: 202, Mismatches: 24, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
129 24 0.12
130 15 0.07
131 85 0.42
132 7 0.03
133 71 0.35
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.37
Consensus pattern (132 bp):
GATTTCTAAGACCTCCGGCATAATTTTGATTCACGATGTTATCCCGATCGATTCCTTATCTTTTG
ACTTACGATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCCGAGC
AT
Found at i:2298297 original size:87 final size:88
Alignment explanation
Indices: 2298094--2298323 Score: 329
Period size: 88 Copynumber: 2.6 Consensus size: 88
2298084 CTCCAGGTAT
* * * *
2298094 GATTCT-TAAGACCTCCGAGCGTAATTTTGATTCACGATGTTATCCCGATCGATTCCTTATCTTT
1 GATTCTGTAAGACCTCCGGGCATAATTTCGATTCACGGTGTTATCCCGATCGATTCCTTATCTTT
2298158 TGACTTACGATGTTATCCCAGTC
66 TGACTTACGATGTTATCCCAGTC
* * * * *
2298181 GATTTTGTAAGACCTTCGGACATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTT
1 GATTCTGTAAGACCTCCGGGCATAATTTCGATTCACGGTGTTATCCCGATCGATTCCTTATCTTT
*
2298246 TGAC-TGCGATGTTATCCCAGTC
66 TGACTTACGATGTTATCCCAGTC
* *
2298268 TATTCTGTAAGACCTCCGGGCATAATTTCGATTCACGTGTGTTATCTCGATCGATT
1 GATTCTGTAAGACCTCCGGGCATAATTTCGATTCACG-GTGTTATCCCGATCGATT
2298324 TATTATTTTT
Statistics
Matches: 125, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
87 54 0.43
88 71 0.57
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (88 bp):
GATTCTGTAAGACCTCCGGGCATAATTTCGATTCACGGTGTTATCCCGATCGATTCCTTATCTTT
TGACTTACGATGTTATCCCAGTC
Found at i:2298553 original size:21 final size:19
Alignment explanation
Indices: 2298514--2298563 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
2298504 TATACGAAAT
*
2298514 AAAAAAAATAAATACCAAA
1 AAAAAAAAAAAATACCAAA
*
2298533 AAATAATAAAAAAATAGCAAA
1 AAA-AA-AAAAAAATACCAAA
2298554 AAAAAAAAAA
1 AAAAAAAAAA
2298564 GAAAAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 8 0.30
20 4 0.15
21 15 0.56
ACGTcount: A:0.82, C:0.06, G:0.02, T:0.10
Consensus pattern (19 bp):
AAAAAAAAAAAATACCAAA
Found at i:2299931 original size:17 final size:17
Alignment explanation
Indices: 2299911--2299977 Score: 66
Period size: 17 Copynumber: 4.0 Consensus size: 17
2299901 CTAAGTTTTT
2299911 AAAACCCCTAAAAATCC
1 AAAACCCCTAAAAATCC
*
2299928 AAAATCCCCT-AAAATTC
1 AAAA-CCCCTAAAAATCC
* *
2299945 AAAACCTCTTAAAATCC
1 AAAACCCCTAAAAATCC
**
2299962 -AAAGTCCTAAAAATCC
1 AAAACCCCTAAAAATCC
2299978 TAAAGTCAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
16 16 0.39
17 20 0.49
18 5 0.12
ACGTcount: A:0.49, C:0.30, G:0.01, T:0.19
Consensus pattern (17 bp):
AAAACCCCTAAAAATCC
Found at i:2303271 original size:26 final size:26
Alignment explanation
Indices: 2303235--2303287 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2303225 GTTGACTTAG
2303235 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2303261 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2303287 G
1 G
2303288 ATCGACCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2305039 original size:26 final size:26
Alignment explanation
Indices: 2305001--2305053 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2304991 GTTGACTTAG
*
2305001 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2305027 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2305053 G
1 G
2305054 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2305925 original size:26 final size:26
Alignment explanation
Indices: 2305886--2305938 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2305876 GTTGACTTAG
2305886 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* *
2305912 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAATTCATTCCCAGTCTAA
2305938 G
1 G
2305939 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:2307447 original size:888 final size:886
Alignment explanation
Indices: 2302200--2307795 Score: 7750
Period size: 886 Copynumber: 6.3 Consensus size: 886
2302190 NNNNNNNNNN
** * * ***
2302200 CGGTTGGCTTAGGCATATTGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTA
1 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCAGTA
* * * * *
2302265 GCAAGATTGGCAGCACACATG-GGGGGACCCGATCGATCCCCGGC-T-TGCATCCTGCCCCTCTG
66 GCAGGATCGGCAGCACGCA-GAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCTGCCCCTCTG
* * *
2302327 GCAGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATT-CCAGTA
130 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
2302390 TAAGCATATGGAGTTCATTCCCA-TGTAAGATCAGA-CGGACCGAGGGTTGTGGGTGCACATGCT
195 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCT
* *
2302453 GGGCTCGGGCATGTGCTGGTGCTGCA-TTTTTTT-GCC-CGGGCACCATCGCGGAGCATCACGGA
260 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCAT-------CAT--CGGA
** *
2302515 GAACCTGACC-AGCGGCATTGGGGTTCCGGTGATT--GGGGG-GGGGGGTGTGCACACATGATGT
316 GAACCTGACCGA-CGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGT
2302576 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
380 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
2302641 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
445 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2302706 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
510 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
2302770 GTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCTGAAAA
575 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
2302833 AATTTTAAAAAAATCC--AACCGTAAAAAGTTT-TAAAATCGTGAAAAATAAAAAACGTGTCGTC
640 AATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
2302895 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
705 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2302960 CATTGGCATGG-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
770 CATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
2303024 GCGCATCCCG-C-CTCTGGCCGGC-TAGTGCCCG-CCGCCCGCTCGTTTCGT
835 GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGT
*
2303072 CGGTTGGCTTAGGCATACGGAGTTCATTCCC-GTCTAAGATCAGAC--AA-TGAGGGTTACA-TA
1 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCAGTA
* ** * *
2303132 GCAGGATCGACAGCACGCAG-GGGGGACCCG-GTGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
66 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCTGCCCCTCTGG
* *
2303195 CCGGCTGAGTGCCCGCACG-TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
131 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
2303259 AAGCATACGGAGTTCATTCCCAGTGTAAGATC-GACC-GA-CGAGGGTTGTGGGTGCACATGCT-
196 AAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTG
* * * *
2303320 GGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGGC-GGGACCATCGCCGAGCATCCGGAGAAC
261 GGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGG-GCA---CC-ATCAT-CGGAGAAC
2303384 CTGACC-ACGGCATTGGGGTTCCGACGATT--GGGGGC-GGGGG-GTGCGCACATGATGTGCGAT
320 CTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
2303444 GGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
385 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
2303508 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
450 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
2303573 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
515 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
2303638 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACT-C--CTGAAAAAATTT
580 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
2303699 TAAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
645 TAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
2303763 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
710 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * **
2303828 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATTCACGGCTTATGCA
775 GCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
2303892 T-CCGCCTCTC-GGCCGACGTAGTGCCCGCCCGCTCCGCTTGTTTCAT
840 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC-CCGCTCGTTTCGT
* * *
2303938 CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAATCAGACCTG-ATTGAGGGCTGCAG
1 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGA-CTGAACTGAGGGTTGCAG
* * * ** *
2304002 CAGTAGGATTGGCAGCACGCA-AGGGGGCACCCGGTCGATCCCGA-CTTGTGCATTGCCTGCCCC
64 TAGCAGGATCGGCAGCACGCAGAGGGGG-ACCCGACCGATCCCCAGCTTGTGCA-T-CCTGCCCC
* * * * * ** *
2304065 TCTGGCCGACTGAGCGCCCAC-CGCTTCTTTTTGTGGGTTGACTTAGGCATATGGAGTTTTTTAC
126 TCTGGCCGGCTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * *
2304129 CAGTCTAAGCATACGAAGTTCATT-CCAGTGTAAGATCGGACCGTACCGAGGGTTGTGGGTGCAC
190 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCAC
* * * *** *
2304193 ATGCTGGGCTTCAGGCATGTTGCTGGTGCCCGTATTTTTTTTTTGCCCATGGCACCATCGTCGGA
255 ATGCTGGGC-TCGGGCATG-TGCTGGTG-CCGCA-TTTTTTTTCGCCTGGGGCACCATCATCGGA
*
2304258 GAAACCTGACCGGTGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGAT
316 G-AACCTGACC-G-ACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGAT
* * * *
2304323 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCAATGCCTCATTAAACCTCGAAAAGC
378 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-C
* *
2304387 TCACA-CCCCTTAAAGAGCATTTGAAGA-TTTACAGGTTTGCTGCTAGTAGCCATTAAGGTGTCT
442 TCACACCCCCTTAAAGAGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
2304450 GAAATGGGCACACTTTTTTCAAATGGTCACAAAATCCTGTACACTAT-GAGTTTTTAGCTGAATT
506 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT-TCGAGTTTTTAGCTGAATT
* * * *
2304514 TTTTTTTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT
570 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* *
2304579 GAAAAAATTTTAAAAAAAT-CTCGAACAGTAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGA
635 GAAAAAATTTTAAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* *
2304642 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
699 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * * *
2304707 AAATGGCATTGCCATGGCAAAAATATGAAGATGTGGCTAAACCCATCAACCACCCTACCGATCTA
764 AAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
2304772 CGGGTTGCGCATCCCGCCTCTTTGGCCGACGTAGTGCCTGCCCGTCTGCTCATTTCGT
829 CGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGT
* * * * * *
2304830 TGGTTGGCTTAGGCATGCGAAGTTCATTACCAGTCTAAGATCAGAC-CAGACTGAGGGTTGCGGT
1 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGA-ACTGAGGGTTGCAGT
* * * * * * *
2304894 AGCAAGATTGGCATCACACAGAGGGGTACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTA
65 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCTGCCCCTCTG
* *
2304959 GCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTC
130 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** * * *
2305024 TAAGCATACGGAGTTCATTCCTAGTGTAAGATCAGACTAGACCAAGGGTTGCGGGCGCACATGCT
195 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCT
* * * *
2305089 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTC-ACTCAGTGCACCATCGTCGGAGAACCTGA
260 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCT-GGGGCACCATCATCGGAGAACCTGA
* * *
2305153 TCCG-CGGCATTGGGGTTCTGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGTGATGGG
324 -CCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
2305217 TGCTGGTACTTGGCCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
388 TGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
2305282 TTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
452 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
2305346 ACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTTAGCTGAATTTTTTTGTGCAT
517 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
2305411 GCCAACAAAAA-ACAAGGATTACATCTACCAAGTTTAGGGCTAAAACTCCTTCTGAAAAAATTTT
581 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTT
* * *
2305475 TAAAAAAATCCCGAA-CATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
645 TAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* **
2305539 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATACCATTG
710 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
2305604 GCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCA-CCTGATCGATCCACGGCTTGTGC
775 GCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTGCGC
* * * *
2305668 AGCCCGTCTGTCTGGCCGACGTAGTGCCCACCCGCCCGCTCGTTTCGT
839 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGT
* * * * * * * *
2305716 CGGTTGGCTTAGGTATACAGAGTTCATTCCCATTCTAAGATCAGATTGGA-TCGATGGTTGTAGC
1 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACT-GAGGGTTGCAGT
* * * * * *
2305780 AGCAAGATCGGTAGCACGTA-AGGGGGACCCGTCTGATCCCCAGCTTGGGCATCCTGCCCCTCTG
65 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCTGCCCCTCTG
* * * * * *
2305844 GCCGGCTAAGCGCCCACGCGTTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTC
130 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
2305909 TAAGCATACGAAGTTCATTCCCAGTGTAAGATCAGACCGGACCAAGGGATGTGGGTGCACATGCT
195 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCT
* * * ** *
2305974 GAGCTTGGGCATGTGTTGGTGCTACATTTTTTTTC-CC-GGGGCACCATCGTCGGAGAACCTGAC
260 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCATCGGAGAACCTGAC
* * *
2306037 CGACAGCATTGGGGTTTCGACAATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
325 CGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
2306102 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAACAACTCACACCCCCTTA
390 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
2306167 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGACACT
455 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
2306232 TTTTTCAAATGGTTACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
520 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * ** ** * *
2306297 AAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCTGAAACTCCTTCTGAAAATTTTTTTAAG
585 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* *
2306362 CAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
650 AAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
2306426 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
714 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * * *
2306491 GGAAAAAATATAAAGATATGCCTAAACCCACCTACCACACTATCGATCCATGGCTTGTGCATCCC
779 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * ** *
2306556 GCCTCTCTGGCCTACATAATGCCCGCCCGCCTACTCGTTTCAT
844 GCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGT
* ** *
2306599 TGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGAACTGAGGGTTGCAATA
1 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCAGTA
* * **
2306664 GTAGGATCGACAGCACATAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCTGCCCCTCTGG
66 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCTGCCCCTCTGG
* * * * * * * *
2306729 CCTGCTAAGCGCTCGCACGCTCGTTTCGTAGGTTGACTTAGGCATATGGAATT-ATTCCTATTCT
131 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * *
2306793 AAGCATACGGAGTTCATTCCCAGTGTAAGATTGGACCAGACCAAGGGATGTGGGTGCACATGCTA
196 AAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTG
* *
2306858 GGCTCAGCCATGTGCTGGTGCCGCATTTTTTTTTCGCCTGGGGCACCATCATCGGAGAACCTGAC
261 GGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCTGGGGCACCATCATCGGAGAACCTGAC
* * *
2306923 CGACGGCATTGGGGTTCCGGCGATTGGGGGGCAGGAGGGGGGTGTGCGTACATGATGTGCGATGG
325 CGACGGCATTGGGGTTCCGACGATT-GGGGG--GGCGGGGGGTGTGCGCACATGATGTGCGATGG
*
2306988 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
387 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
2307053 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGAC
452 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
2307118 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
517 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
2307183 CCAAAAAAAATA-AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAA
582 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
*
2307247 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCGT
647 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
2307312 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
712 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
2307377 ATGGCAAAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
777 ATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
2307442 CCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCGT
842 CCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGT
* ** * * *
2307487 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTTGA-TCGAACCGAGGGTTACGGT
1 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GAACTGAGGGTTGCAGT
* * * * * * * * *
2307551 AGTAGGATCGACAGCATGTAG-GGGGGACCCGATCGATCCTCAACTTGGGCATCCTGGCCCTCTG
65 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCTGCCCCTCTG
* * * *
2307615 GCCGGCTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTC
130 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
2307680 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCT
195 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCT
*** * * *
2307745 GGGCTCTAACATGTGCTGGTGCCGTATTTTTTTTCGCCCGAGGCACCATCA
260 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCA
2307796 CCGAAGCATG
Statistics
Matches: 4203, Mismatches: 416, Indels: 195
0.87 0.09 0.04
Matches are distributed among these distances:
861 23 0.01
862 172 0.04
863 204 0.05
864 107 0.03
865 29 0.01
866 105 0.02
867 96 0.02
868 50 0.01
869 14 0.00
870 1 0.00
871 23 0.01
872 53 0.01
873 13 0.00
874 9 0.00
875 39 0.01
876 59 0.01
877 1 0.00
878 28 0.01
879 15 0.00
880 10 0.00
881 9 0.00
882 133 0.03
883 586 0.14
884 180 0.04
885 362 0.09
886 606 0.14
887 159 0.04
888 426 0.10
889 240 0.06
890 234 0.06
891 134 0.03
892 63 0.01
893 20 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCAGTA
GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCTGCCCCTCTGG
CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCATCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
AATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGT
Found at i:2307709 original size:26 final size:26
Alignment explanation
Indices: 2307657--2307709 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2307647 GTTGACTTAG
*
2307657 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2307683 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2307709 G
1 G
2307710 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2308626 original size:27 final size:27
Alignment explanation
Indices: 2308596--2308647 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
2308586 ATATAGTAAA
*
2308596 GGAAAAACTCAAAACGACGTCGTTTAG
1 GGAAAAACCCAAAACGACGTCGTTTAG
* *
2308623 GGAAAGACCCAAAATGACGTCGTTT
1 GGAAAAACCCAAAACGACGTCGTTT
2308648 TAACCAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.19
Consensus pattern (27 bp):
GGAAAAACCCAAAACGACGTCGTTTAG
Found at i:2309333 original size:17 final size:17
Alignment explanation
Indices: 2309313--2309379 Score: 66
Period size: 17 Copynumber: 4.0 Consensus size: 17
2309303 CTAAGTTTTT
2309313 AAAACCCCTAAAAATCC
1 AAAACCCCTAAAAATCC
*
2309330 AAAATCCCCT-AAAATTC
1 AAAA-CCCCTAAAAATCC
* *
2309347 AAAACCTCTTAAAATCC
1 AAAACCCCTAAAAATCC
**
2309364 -AAAGTCCTAAAAATCC
1 AAAACCCCTAAAAATCC
2309380 TAAAGACAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
16 16 0.39
17 20 0.49
18 5 0.12
ACGTcount: A:0.49, C:0.30, G:0.01, T:0.19
Consensus pattern (17 bp):
AAAACCCCTAAAAATCC
Found at i:2313843 original size:5 final size:5
Alignment explanation
Indices: 2313833--2313857 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
2313823 AAATTCTAAA
2313833 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
2313858 TTAAGCCCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:2313895 original size:33 final size:33
Alignment explanation
Indices: 2313856--2314166 Score: 393
Period size: 33 Copynumber: 9.5 Consensus size: 33
2313846 ATAAAATAAA
*
2313856 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAA
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
2313889 ATTTAAGCCCAGTTTATCTGGCC-TCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATC-AATGAAG
*
2313922 ATTTAAGCCCAGTTTATCTGGCCATCAATG-AT
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* *
2313954 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
*
2313987 CTTTAAGCCCAGTTTATCTGGCTC-TCAATGAA-
1 ATTTAAGCCCAGTTTATCTGGC-CATCAATGAAG
*
2314019 ACTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
1 A-TTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* * *
2314053 CTTTAAGCCCAGTTCATCTGGCCATCAATGAGG
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* * * *
2314086 TTTTAAACCTAGTTTATCTGG-CTTCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATC-AATGAAG
* *
2314119 ATTTAAGCCCAGTTTAGCTGGCCTTCAAT-AA-
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
*
2314150 ATTTAAGCCAAGTTTAT
1 ATTTAAGCCCAGTTTAT
2314167 TTAGCCCCAA
Statistics
Matches: 243, Mismatches: 26, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
31 15 0.06
32 37 0.15
33 184 0.76
34 7 0.03
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (33 bp):
ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
Found at i:2314025 original size:98 final size:98
Alignment explanation
Indices: 2313855--2314166 Score: 434
Period size: 98 Copynumber: 3.2 Consensus size: 98
2313845 AATAAAATAA
*
2313855 AATTTAAGCCCAGTTTATCTGGCCATCAATGAAAATTTAAGCCCAGTTTATCTGGC-CTCAAATG
1 AATTTAAGCCCAGTTTATCTGGCCATCAATGAAGATTTAAGCCCAGTTTATCTGGCTCTCAAATG
2313919 AAGATTTAAGCCCAGTTTATCTGGCCATCAATG
66 AAGATTTAAGCCCAGTTTATCTGGCCATCAATG
* * *
2313952 ATATTTAAGCCTAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCTCTC-AAT
1 A-ATTTAAGCCCAGTTTATCTGGCCATCAATGAAGATTTAAGCCCAGTTTATCTGGCTCTCAAAT
*
2314016 GAA-ACTTTAAGCCCAGTTTATCTGGCCATTAATG
65 GAAGA-TTTAAGCCCAGTTTATCTGGCCATCAATG
* * * * *
2314050 AAGCTTTAAGCCCAGTTCATCTGGCCATCAATGAGGTTTTAAACCTAGTTTATCTGGCT-TCAAA
1 AA--TTTAAGCCCAGTTTATCTGGCCATCAATGAAGATTTAAGCCCAGTTTATCTGGCTCTCAAA
* * *
2314114 TGAAGATTTAAGCCCAGTTTAGCTGGCCTTCAATA
64 TGAAGATTTAAGCCCAGTTTATCTGGCCATCAATG
*
2314149 AATTTAAGCCAAGTTTAT
1 AATTTAAGCCCAGTTTAT
2314167 TTAGCCCCAA
Statistics
Matches: 190, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
97 17 0.09
98 88 0.46
99 84 0.44
100 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (98 bp):
AATTTAAGCCCAGTTTATCTGGCCATCAATGAAGATTTAAGCCCAGTTTATCTGGCTCTCAAATG
AAGATTTAAGCCCAGTTTATCTGGCCATCAATG
Found at i:2314986 original size:23 final size:22
Alignment explanation
Indices: 2314956--2315018 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 22
2314946 ACCCGAGTCA
2314956 ATTCTGTAAGACCTCCAGGCATG
1 ATTCTGTAAGACCTCC-GGCATG
*
2314979 ATTCTGTAAGACCTTCGAGCATG
1 ATTCTGTAAGACCTCCG-GCATG
*
2315002 ATT-TCTAAGACCTCCGG
1 ATTCTGTAAGACCTCCGG
2315019 GCATAATTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 1 0.03
22 12 0.33
23 23 0.64
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (22 bp):
ATTCTGTAAGACCTCCGGCATG
Found at i:2315013 original size:22 final size:22
Alignment explanation
Indices: 2314962--2315028 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
2314952 GTCAATTCTG
*
2314962 TAAGACCTCC-AGGCATGATTCTG
1 TAAGACCTCCGA-GCATGATT-TC
*
2314985 TAAGACCTTCGAGCATGATTTC
1 TAAGACCTCCGAGCATGATTTC
* *
2315007 TAAGACCTCCGGGCATAATTTC
1 TAAGACCTCCGAGCATGATTTC
2315029 GATTCGCGGT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 20 0.53
23 17 0.45
24 1 0.03
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (22 bp):
TAAGACCTCCGAGCATGATTTC
Found at i:2315144 original size:133 final size:132
Alignment explanation
Indices: 2314869--2315235 Score: 472
Period size: 133 Copynumber: 2.8 Consensus size: 132
2314859 AAGATTTTGA
* * * * *
2314869 GATTTGTAAGACCTCCGGGCATAATTTCGATTTGCGGTGTTGTCCCGATCGATT-TTTTATTTCT
1 GATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTATCTTTC-
* * *
2314933 GACTTGCGATGTTA-CCCGAGTCAATTCTGTAAGACCTCCAGGCATGATTCTGTAAGACCTTCGA
65 GACTTACGATGTTATCCC-AGTCGATTCTGTAAGACCTCCAGGCATGATTCTATAAGACCTTCGA
2314997 GCAT
129 GCAT
2315001 GATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCCTTATCTTTC
1 GATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATT-CTTATCTTTC
* * * * * *
2315066 AACTTATGATTTTATTCCAGTCGATTCTATAAGACCTCCGGGCATGATTCTATAAGACCTTC-AG
65 GACTTACGATGTTATCCCAGTCGATTCTGTAAGACCTCCAGGCATGATTCTATAAGACCTTCGA-
*
2315130 GTAT
129 GCAT
* * *
2315134 GA-TTCTTAAGACCTCTGAGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTTCTTATCTTT
1 GATTTC-TAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTATCCCGATCGA-TTCTTATCTTT
* *
2315198 TGACTTACGATGTTATCCCAGTCGATTTTGTAAGACCT
64 CGACTTACGATGTTATCCCAGTCGATTCTGTAAGACCT
2315236 TCGAACATAA
Statistics
Matches: 204, Mismatches: 25, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
132 55 0.27
133 138 0.68
134 11 0.05
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (132 bp):
GATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTATCTTTCG
ACTTACGATGTTATCCCAGTCGATTCTGTAAGACCTCCAGGCATGATTCTATAAGACCTTCGAGC
AT
Found at i:2315146 original size:22 final size:23
Alignment explanation
Indices: 2315088--2315148 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
2315078 TATTCCAGTC
*
2315088 GATTCTATAAGACCTCCGGGCAT
1 GATTCTATAAGACCTCCAGGCAT
* *
2315111 GATTCTATAAGACCTTCAGGTAT
1 GATTCTATAAGACCTCCAGGCAT
2315134 GATTCT-TAAGACCTC
1 GATTCTATAAGACCTC
2315149 TGAGCATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 8 0.24
23 26 0.76
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (23 bp):
GATTCTATAAGACCTCCAGGCAT
Found at i:2315333 original size:87 final size:88
Alignment explanation
Indices: 2315134--2315374 Score: 326
Period size: 88 Copynumber: 2.8 Consensus size: 88
2315124 CTTCAGGTAT
*
2315134 GATTCT-TAAGACCTCTGAGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTTCTTATCTTT
1 GATTCTGTAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTTCTTATCTTT
2315198 TGACTTACGATGTTATCCCAGTC
66 TGACTTACGATGTTATCCCAGTC
* * * *
2315221 GATTTTGTAAGACCTTCGAACATAATTTCGATTCGCGGTGTTATCCCGATCGA-TTCTTTATCTT
1 GATTCTGTAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTTC-TTATCTT
*
2315285 TTGAC-TGCGATGTTATCCCAGTC
65 TTGACTTACGATGTTATCCCAGTC
* * * * * * *
2315308 TATTCTGTAAGATCTCCGGGCATAATTTTGATTCACGTGTGTTATCTCGATCGATTTATTATTTT
1 GATTCTGTAAGACCTCCGAGCATAATTTTGATTCGCG-GTGTTATCCCGATCGATTTCTTATCTT
2315373 TT
65 TT
2315375 TTAAACTTGC
Statistics
Matches: 133, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
87 54 0.41
88 77 0.58
89 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.17, T:0.42
Consensus pattern (88 bp):
GATTCTGTAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTTCTTATCTTT
TGACTTACGATGTTATCCCAGTC
Found at i:2315588 original size:13 final size:14
Alignment explanation
Indices: 2315548--2315607 Score: 61
Period size: 13 Copynumber: 4.4 Consensus size: 14
2315538 ATATTATACG
2315548 AAATACAAAAAAAAT
1 AAATAC-AAAAAAAT
*
2315563 AAATACCAAAAAAT
1 AAATACAAAAAAAT
*
2315577 -AATACAAAAAAAC
1 AAATACAAAAAAAT
* *
2315590 AAA-AAAAAAAAAA
1 AAATACAAAAAAAT
2315603 AAATA
1 AAATA
2315608 ATTGAGGATG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
13 22 0.58
14 10 0.26
15 6 0.16
ACGTcount: A:0.82, C:0.08, G:0.00, T:0.10
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:2315588 original size:14 final size:15
Alignment explanation
Indices: 2315548--2315608 Score: 63
Period size: 14 Copynumber: 4.1 Consensus size: 15
2315538 ATATTATACG
2315548 AAATACAAAAAAAAT
1 AAATACAAAAAAAAT
*
2315563 AAATAC-CAAAAAAT
1 AAATACAAAAAAAAT
*
2315577 -AATACAAAAAAACAA
1 AAATACAAAAAAA-AT
* *
2315592 AAAAAAAAAAAAAAT
1 AAATACAAAAAAAAT
2315607 AA
1 AA
2315609 TTGAGGATGG
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
13 5 0.14
14 12 0.32
15 10 0.27
16 10 0.27
ACGTcount: A:0.82, C:0.08, G:0.00, T:0.10
Consensus pattern (15 bp):
AAATACAAAAAAAAT
Found at i:2316939 original size:17 final size:17
Alignment explanation
Indices: 2316919--2316969 Score: 50
Period size: 18 Copynumber: 3.0 Consensus size: 17
2316909 CCTAAGTTTT
2316919 TAAAACCCCTAAAAATC
1 TAAAACCCCTAAAAATC
* *
2316936 TAAAATCCCATAAAATTC
1 TAAAA-CCCCTAAAAATC
* *
2316954 -AAAACCTCTTAAAATC
1 TAAAACCCCTAAAAATC
2316970 CAAAGTCCTA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
16 8 0.30
17 9 0.33
18 10 0.37
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAAACCCCTAAAAATC
Found at i:2318668 original size:26 final size:26
Alignment explanation
Indices: 2318616--2318668 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2318606 GTTAACTTAG
* *
2318616 GCATACGGAGTTCATTTCGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2318642 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2318668 G
1 G
2318669 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2319535 original size:26 final size:26
Alignment explanation
Indices: 2319506--2319558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2319496 GTTGACTTAG
2319506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2319532 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2319558 G
1 G
2319559 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2320435 original size:26 final size:26
Alignment explanation
Indices: 2320399--2320451 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2320389 GTTGACTTAG
2320399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
2320425 GCATATGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2320451 G
1 G
2320452 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2328698 original size:26 final size:26
Alignment explanation
Indices: 2328646--2328698 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2328636 GTTGACTTAG
**
2328646 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAAACTAA
*
2328672 GCATACGGAGTTCATTCCCAAAGTAA
1 GCATACGGAGTTCATTCCCAAACTAA
2328698 G
1 G
2328699 ATCGACCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAAACTAA
Found at i:2329571 original size:26 final size:26
Alignment explanation
Indices: 2329535--2329584 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
2329525 GACTTAGGCG
*
2329535 TACGGAGTTCATTCCTAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
2329561 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
2329585 ATCGGACAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:2331352 original size:26 final size:26
Alignment explanation
Indices: 2331316--2331387 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
2331306 GTTGACTTAG
*
2331316 GCTTACGGAGTTCACTCCCAGTCTAA
1 GCTTACGGAGTTCATTCCCAGTCTAA
2331342 GCTTACGGAGTTCATTCCCAGTCTAA
1 GCTTACGGAGTTCATTCCCAGTCTAA
* *
2331368 GCATACGAAGTTCATTCCCA
1 GCTTACGGAGTTCATTCCCA
2331388 TACCGAGGGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (26 bp):
GCTTACGGAGTTCATTCCCAGTCTAA
Found at i:2332766 original size:896 final size:895
Alignment explanation
Indices: 2327953--2343732 Score: 20520
Period size: 896 Copynumber: 17.6 Consensus size: 895
2327943 ATTGTGGATT
* *
2327953 GGGGGGGGGTGTACGCACATGATTTGCGAT-GGTGCTGGTACTTGGCCC-TATA-TGG-CCCCTA
1 GGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
2328014 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTT-AAGAGCATTTGA-ATTTTACAGGTTTGCTG
66 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
2328076 CCAGTAGCCATTAAAGTGTC-GAAATGGGGACACCTTTTTTTCAAATGGTCACAAAATCCTGTAC
131 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-C-TTTTTTCAAATGGTCACAAAATCCTGTAC
* *
2328140 ACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCC-AACAAAATACAAGGATCACGTCTACCAA
194 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * ** * *
2328204 GTTTGGGGCCCAAACTCCTT-T-CAAAAATTTTTTAAAAATCCCGAACCAT-AAAAG-TTCAAAA
259 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * * * * *
2328265 ATTGTG-AAAATAAAAAACGACTTCATCTTGCCATGAAACTTTCACATGAAGGGCTT-AGAGA-T
324 ATCGTGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAAC-TTCACATGAA-GGCTTAAGGGACC
* ** *
2328327 ATTGT-TGAATTTACAAGCCATAAAAATCGCCATTGGCATCACAGAAATATGAAGATTTGCCTAA
386 ATTGTATGAATTTACAAGCCATAAAAAT-GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAA
* ** * * * *
2328391 ACCCACCTACCACCATATCGATCCGTGGCTTGCGCATCCCACCTATCTGACCGGCGTAGTGCCCA
450 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG
* ** * *
2328456 ACCATCCGCTCGTTTCGTCGGTTGGCTTAGGCAT-CGGGAGTTCATTCTCAGTCTAAGATTGGAT
515 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATTAGA-
* * * * * *
2328520 CGAAA-TGAGGGTTGCAGCAGCAAGATC-AGTAGCAC-ACA-GGGGGACCCCGATGCGAT-CCCG
578 CCAAACCGAGGGTTACGGCAGCAGGATCGA-CAGCACGA-AGGGGGGA-CCCGAT-CGATCCCCG
* * * * * * *
2328580 GCTTGCGTTATGCCTGTCCTTCTGGTCGACTGACCGCCCGTACGCTCGTTTCGTGGGTTGACTTA
639 GCTTGCG-CAT-CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
**
2328645 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAAAGTAAGATC-GACCCAG
702 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGA-CCAG
* * ** * * *
2328709 GCTGAGGGTTGTGGGTGCACATGCTAGGCTC-GTGCATGTGCTGGTGCCGTATTTTTTTTTGCCC
766 ACCGAGGGTTACGGGTGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTTTTCGCCC
* *
2328773 GGGGCACCA---TC---G----G-CGGAGAACCTGACCGGCGGTATTGGGGTTCCGGCGATTGGG
830 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATTGGG
2328827 G
895 G
2328828 GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
1 GG-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2328893 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
65 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
2328958 TCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGTTCACAAAATCCTGTACA
130 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* **
2329023 TTTCGAGTTTTTAGCTGAATTTTTTTGTGCACACCAAAAAAAATACAAGGATCACGTCTACCAAG
195 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * **
2329088 TTTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
260 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
* * *
2329153 TCGTGAAAAATAGAAAATGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACTATTG
325 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
** * *
2329218 TATGAATTTACAAGCCATAAAAATGGCATTGGCATCACAAAAATATGAAGATTTGCCTAAACCCA
390 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* *
2329283 CCTACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGC
455 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * *
2329348 TCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC
520 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACC
* * ** * * * * *
2329413 GAGAGTTGCAACAGCAGGATTGACAGCACGCAGAGGGGGACCCGACCGATCCCCGCCTTGTGCAT
585 GAGGGTTACGGCAGCAGGATCGACAGCACGAAG-GGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * * *
2329478 CCTGCCCCTCTGGCCGGTTGACCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGT
649 CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
2329543 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGA-CAGGACCGAGGGTTA-
714 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCA-GACCGAGGGTTAC
** * * * * *
2329606 TAGTGCACATGCTGGGCTCGGGTATGTGCTGGCTTCC-CTTATTTTTTTTTTGCCCGGAGCACCA
778 GGGTGCACATGCTGGGCTCAGGCATGTGCTGG-TGCCGC--A-TTTTTTTTCGCCCGGGGCACCA
* * * * *
2329670 TCGCTCGG-G-A-C--C-G-GAACCTAACCGGCCAGCATGGGGGTTCCGAACCGATTGGGG
839 TCG-TCGGAGCATCGTCGGAGAACCTGACCGG-CGGCATTGGGGTTCTG--GCGATTGGGG
*
2329724 GGTGGGGGGGTGTGCGCAC-TGATGTGTGATGGGTGCTGGTACTTGGCCC-TATA-TGGCCCCCT
1 GG-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2329786 AT--CTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGG-TTGCT
65 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
2329848 GCCAGTAGCCATTAAAGTGTCTG-AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
130 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
*
2329912 CTTCGAGTTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
195 CTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC-A
*
2329977 AGTTTGGGGCCAAAACTTCTTCTGAAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAA
258 AGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAA
2330042 AAATCGTG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
322 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
*
2330106 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGGAGAAATATGAAGATGTGCCTAAAC
387 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
** * *
2330171 CCACCTACCACCCTATCGATCCACAACTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCA
452 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
2330236 CGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTTA-ACCG
517 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TTAGACCA
* * * * * * * * * * *
2330300 GACCAAGGATTGCAGCAGCATGATCGGCAGCACGCAA-GGGGGACCAGACCGATCCTCGGCTTGT
581 AACCGAGGGTTACGGCAGCAGGATCGACAGCACG-AAGGGGGGACCCGATCGATCCCCGGCTTGC
* * * * * * * * *
2330364 TCATCGTGCCCCTTTAGCCGGCTGAGCACCAGCACGCTCGTTTCATGGGTGGACTTAGGCTTACG
645 GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * ** * **
2330429 GAGTTTATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTGTAAAATCAAACTAGATTGAGGGT
710 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGT
* * *** *
2330494 T-GGGTGTGCACATGCAGGGCTCAGGCATGTGCTGGTG-C-CATATTTTTTTCGCCCAAAGTACC
775 TACGG-GTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCAT-TTTTTTTCGCCCGGGGCACC
* * *
2330556 ATCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGCGATTGGGG
838 ATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATTGGGG
* *
2330614 GGATGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
1 GG-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2330679 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
65 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
2330744 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCATAAAATCCTGTACA
130 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
*
2330808 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
195 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * *
2330873 TTTGGGGCCAAAACTCCTTCTGAAAGAATTTTAAAAAAATCCCAAACCGTAAAAGGTTTTAAAAA
260 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
* *
2330938 TCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAGTTCACATGAAGGCTTAAGGGACCATTG
325 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
*
2331003 TATGAATTTACAAGCCATAAAAATGGCATCGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
390 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* ** * * *
2331068 ACTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTGTCTGGCCGGCGTAGTGCTCACCCGC
455 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * * *
2331133 CCGCTCCTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTTTAAGATCATACCAAACC
520 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACC
* * * * ** ** * *
2331198 GAGGGTTACGGCAGCAAGATAGACAGCAC-ACAGGGGGGACGCGACCGATCCTTGGCTTATGTAA
585 GAGGGTTACGGCAGCAGGATCGACAGCACGA-AGGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * * *
2331262 CCTACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCTTACGGAGT
649 CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
2331327 TCACTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCATACC
714 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAG-AT-CG--G---A---CCAGACC
* * * *
2331392 GAGGGTTGTAC--ATGCACATGCTGGGCT-TGGCCATGTGTTGGTG-C-CATTTTTTTTTTGCCC
769 GAGGG-T-TACGGGTGCACATGCTGGGCTCAGG-CATGTGCTGGTGCCGCA-TTTTTTTTCGCCC
* * * * * * * *
2331452 GGGGCACCATTGTCGAAGCATCGTCTGAGAACCTGACTGACAGCATTGGGGTTTTGACGATTGGG
830 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATTGGG
2331517 G
895 G
* * *
2331518 GGGCGGTGGGGTGTGGGCACATGATGTGCGATGGGTGCTGGTACCTGGCACTTATATTGGCCCCC
1 GGG-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
2331583 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
64 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
2331648 TGCCAGTAGCCATCAAAGTGTCTGAAATAGGGACATTTTTTTCAAATGGTCACAAAATCCTGTAC
129 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
*
2331713 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAA
194 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
** * * * * * * * *
2331778 GTTTTTGGCTAAAAATCCTTTTGAAAAATTTTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAA
259 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * *
2331843 ATCGTGAAAAATATAAAACGCGTCGTCTTGCCATGAAACTTCACATTAAGGCTTAAGGGACCATT
324 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
*
2331908 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCC
389 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
* * *
2331973 ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTATCTGGCTGGCGTAGTGCCCGCCCG
454 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * * *
2332038 TCCGCTCGTTTTGTCGATTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTAGACCAAAC
519 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAAC
* * * * ** * *
2332103 TGAGGGTTACGGTAGCAAGATCTACAGCACGTTGGGGGGACCTGATCGATCCCCGGCTTACGCAT
584 CGAGGGTTACGGCAGCAGGATCGACAGCACGAAGGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * * * *
2332168 CCTACCCCTCTGGCCGACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACTGAGT
649 CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
2332233 TCATTCCCAGACTAAGCATACGGAGTTCATTCCCAGTGTAAAATCAGACCAGACCGAGGGTTACG
714 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACG
* * ***
2332298 GGTGCACATGCGGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCACCCAAAGCACCATCGTC
779 GGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTC
** * *
2332363 AAAGCATAGTCGGAGAACCTGATCGGCGGCATTGGGGTTCTGGCGATTGAGGG
844 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATTG-GGG
* ** *
2332416 GGTGGGGGGTGTGCGCACATGATGTGCGACCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCA
1 GGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
2332481 TCCCTTATCATACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
66 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
2332546 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCCTGTACAC
131 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* *
2332611 TTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGT
196 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* *
2332676 TTGGGGACAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAAT
261 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
* *
2332741 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACATGAAGGCTTAAGGGACCATTGT
326 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* * * * *
2332806 ATGAATTTACAAGCCATAAAAATGGCATCGACATGGCATAAATATGAAGATTTGCCTAAACCCAA
391 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
2332871 CTACTACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCAGCCCGCC
456 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* **
2332936 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCG
521 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACCG
* ** * * * *** *
2333001 AGGGTTACGGTAATAGGATCAACAGCACGCAGGGGGGACCCGATCGATCCTCGG-TTTTTCATTC
586 AGGGTTACGGCAGCAGGATCGACAGCACGAAGGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * * * * * * *
2333065 TGCCCTTTTGGCAGGCTGAACGCCCACACGCTGGTTTCGTGTGTTGACTTAGGCTTACGAAGTTC
651 TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * *
2333130 ATTCCCTGTCTAAGCATATGGAGTTCATTCCCAGTGCAAGATCGGACCCGACTGAAGGTTACGGG
716 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGGG
* * * * * *
2333195 TGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGAGGCAGCATTGTCGA
781 TGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGG
* * * * * * *
2333260 AGCATCGCCGGAGAACCTAACCGACGGCGTTGGGTTTCTGACAATTGGGG
846 AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATTGGGG
** * *
2333310 GGCAGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTACATTGGCCCCCTA
1 GGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
2333375 TACCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
66 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
2333440 CCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCCTGTACAC
131 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* * * * * * * * * *
2333505 TTTGATTTTTTAGCTGGATTGTTTTGTGCATACCAACAAAAATACAAAGATCATGTCTACAAAAT
196 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * *
2333570 TTGGGGCCAAAACACCTTCTG-AAAATTTTTAAAAAAAATCTCGAACTGTAAAAAGTTTTAAAAA
261 TTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
** * *
2333634 TCACGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
325 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
*
2333699 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCA
390 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
2333764 CCTACCACCCTATCGATCCACGACTTGTGCATCCCGCCTCTCTAGCCGGCGTAGTGTCTGCCCGC
455 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
*
2333829 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAAACC
520 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACC
* * *
2333894 GAGGGTTACGGCAGCAGGATCAACAGCAC-ACAGGGGGGGACCCGATCAATCCCCGGCTTGCACA
585 GAGGGTTACGGCAGCAGGATCGACAGCACGA-A-GGGGGGACCCGATCGATCCCCGGCTTGCGCA
* * * *
2333958 TCCTG-CCCTCTTGGCCGACTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCAGACGGA
648 TCCTGCCCCTC-TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
2334022 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTACTGTAAGATCGGACCGGACCGAGGGTTG
712 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTA
* * *
2334087 CAGGTGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCG
777 CGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCG
* ** *
2334152 CCGGAGCATCGTCGGAGAACCTGACTAGCGGCATTGGGGTTCCGGCGATTGGGG
842 TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATTGGGG
2334206 GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
1 GG-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
2334271 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
65 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
2334336 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
130 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* *
2334401 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
195 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
*
2334466 -TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
260 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
* *
2334530 TCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
325 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
** * *
2334595 TATGAATTTACAAGCCATAAAAATTTCATTGGCATGGTAGAAATTTGAAGATGTGCCTAAACCCA
390 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * * *
2334660 CCTACCTCCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCTGCCCAC
455 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * * *
2334725 CCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATCCCCAATCTAAGATTGGACCGAACT
520 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACC
* ** * * * * *
2334790 AAGGGTTGTGGCAGTAGGATCGGCAGCAC-ATAGCGGGGGACCC-AGCCAATCCCCGGCTTGTGC
585 GAGGGTTACGGCAGCAGGATCGACAGCACGA-AG-GGGGGACCCGA-TCGATCCCCGGCTTGCGC
* * * * * * *
2334853 ATCCTTCCCCTCTGGTCGGTTGAGAGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATGCGGA
647 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * ** *
2334918 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCATTGTAAGATCGGACTGGACCGAGGGTTG
712 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTA
* *
2334983 TGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGAATTTTTCTTTCGCCCGGGGCACCATC
777 CGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT-TTTCGCCCGGGGCACCATC
* * * * * * * *
2335048 GCCGGAGCATCCTCGGGGTACCTAACCGGCGACATTGGGGTTCCGGCAATTGGGG
841 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATTGGGG
2335103 GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
1 GG-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
2335168 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
65 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
2335233 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
130 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
2335298 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
195 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
2335363 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
260 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
2335428 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
325 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
2335493 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
390 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* *
2335558 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCTCGC
455 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * *
2335623 CCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCACACC
520 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACC
* * * * * * * *
2335688 AAGGGTTACGGTAGTAGGATTGGCAGCATGAAGGGGGGGACCCGACCGATCCCCAGCTTGCGCAT
585 GAGGGTTACGGCAGCAGGATCGACAGCACGAA-GGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * *
2335753 CCTACCCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
649 CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * ** * * *
2335818 TCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTGTAAGATTAGACCGGACCGAAGGTTGCG
714 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACG
** * * * *
2335883 GGTGCACATATTGGGCTCAGGCATGTGCTTGTGCCGTATTTTTTCTCGCCCGAGGCACCATCGTC
779 GGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTC
* ** * *
2335948 GAAGCATCACCGGAGAACTTGACCGGCGGCATTGGGGTTCTGGTGATTGGGGTG
844 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATT-GGG-G
* *
2336002 GCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGCCCCTTATATTGGCCCCCT
1 G-GGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2336067 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
65 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * **
2336132 GCCAGTAGCAATTAAAGTGTCTAAAATATGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
130 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * * * *
2336197 GTTCGAGTTTTTAGCTGAATTTTTTTTTCCATGCCAACAAAAATACAAGGATCACATCTACCAAG
195 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* *
2336262 TTTGGGGCCAAAACTCCTTTTCAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
260 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
2336327 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
325 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* * * *
2336392 TAAGAATTTACAAGCCGTAAAAATGGCATTGGAATGGAAGAAATATGAAGATGTGCCTAAACCCA
390 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * ** * *
2336457 CTTACCACCCTATCGTTCCACGGCTTGCGCATCCCGTCTCTCGGGCCGACGTAGTGCGTGTCTGC
455 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * * * *
2336522 CCGTTCATTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATGGACCAAACT
520 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACC
* *** * * * * * *
2336587 GAGGGTTGCAATAGCAGGATCGATAGCAC-ACAGGGGGGGACCCAATCGATCCTCGACTTACGTA
585 GAGGGTTACGGCAGCAGGATCGACAGCACGA-A-GGGGGGACCCGATCGATCCCCGGCTTGCGCA
** * * * * * * *
2336651 TCCTATCCGTCTGGTCGACTGAGCACCCGCACGCTAGTTTCGTGAGTTGACTTAGGCATACAGAG
648 TCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
2336716 TTCATTCCCAGTCTAATCATATGGATTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTAC
713 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTAC
* * * **
2336781 GGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCACCCGGGGCACCATCAC
778 GGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGT
* * * *
2336846 CGGACCATCGTCGGAGAGCCTGACCGACGACATTGGGGTT-TCGGCGATTGGGG
843 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGCGATTGGGG
* ** * * * *
2336899 AGGCGTTGGGTGTGGGCACATGATGTGTGATGGGTGTTAGTACTTGGCCCTTATATTGGCCCCCT
1 -GGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
2336964 ATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTTAAGACCATTTGAGATTTTACAGGTTTGCT
65 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * * ** *
2337028 ACCAGTAGCCATTGAAGTGTCTAAAATGGGGACACTTTTTGCAAATGGTCACAAAATATTGTACC
130 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * *
2337093 CTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATA-AAGGATCATGTCTACCAAG
195 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * *
2337157 TTTGGGGCCAAAACTCCTTTTGAAAAAATTTAAAAAAAACCCCGAACCAT-AAAAGTTTCAAAAA
260 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
** *
2337221 TTATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
325 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* * *
2337286 TATGAATTTACAAGCCATGAAAATGGCATTGGCATGGTAGAAATATGAAAATGTGCCTAAACCCA
390 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * * * *
2337351 CGTACGACCCTATCGATACATGGCTTGCGTAACCCGCCTCTATGGCCGACGTAGTGCCCGCCCGC
455 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * *
2337416 CTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGAACC
520 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACC
* * * * * ** * * *
2337481 AATGGTTACAGTAGCAGGATTGGTAGCACGCATGGGGGGACCC-ATCTGATCCCCTGCTTGTGCA
585 GAGGGTTACGGCAGCAGGATCGACAGCACG-AAGGGGGGACCCGATC-GATCCCCGGCTTGCGCA
* * * **
2337545 TCCTGCCCCTCTGACCGGCTGACCGCCCGCACACTCGTTTAATGGGTTGACTTAGGCATACGGAG
648 TCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
2337610 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGA-CTGAACCGAGGGTTG
713 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAG-ACCGAGGGTTA
* * * * *
2337674 TGGGTGCACATGATAGGCTC-GGCCATGCGCTGGTGCCGCATTTTTTTT-GCCCGGGGCACCATA
777 CGGGTGCACATGCTGGGCTCAGG-CATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATC
* * *
2337737 GTCGAAGCATCGTCGGAGAACCTGAACGGCGGCATTGGGGTT-TCGACGATTGGGGG
841 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGCGATT-GGGG
* * * * * *
2337793 GGCAGGAGGGGGTTTACGCGCAAGATGTGCGATGGGTGCTAGCACTTGGCCCTTATATTGGCCCC
1 GG--GG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
2337858 CTATCCATCATCAAAGCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
63 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* ** * * *
2337923 CTGCCAATAGCCATTAAAGCATCTTAAATGGGGACACTTTTTTCAAACGGTCAAAAAATCCTGTA
128 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
* * * *
2337988 C-CTTTCGAGTTTTTGGCTGAA-TTTTTTGTGCGTGCCAAAAAAAATACAACGATCACATCTACC
193 CAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * *
2338051 AAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCGA
257 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAA
* *
2338116 AAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACATCACATGAAGGCTTAAGGGACCA
322 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
* ** * *
2338181 TTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACAGTAGAAATATGAAGATGTGCCTAAAG
387 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
* * * * * *
2338246 CCACCTACCACCCTATCGATCCACGGCTGGCGTACCCCACCTCTCTGGCCGACGTAAT----GCC
452 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
2338307 CGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAG
517 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAA
* *** * * * * *
2338372 ACCGAGGGTTGCGGCTTTAGGATC-AGTAGCAC-ATAGGAGGGGACCCGGTCGATGCTCGGCTTA
582 ACCGAGGGTTACGGCAGCAGGATCGA-CAGCACGA-AGG-GGGGACCCGATCGATCCCCGGCTTG
* * * * * *
2338435 CGCATCCTGCCCCTTTTGCCGGCTGAGCACCCGTACGCTCGTTTCATTGGTTGACTTAGGCATAC
644 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * *
2338500 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCGGATCAAACTGATGA
709 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGG
* *** *
2338565 TTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTTACATTGTTTTTCGCCCGGGGCACCA
774 TTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCA
** * * * *
2338630 TTATCGGAGCATC-ACTGGAGAACCTGACCGACGGCATTGGGG-TCCGACGATTTGGGG
839 TCGTCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGA-TTGGGG
* * * *
2338687 CCGGGGGAGAGGGTGTTCACACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCC
1 --GGGGG-G-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
2338752 CCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
62 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
2338817 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
127 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
* * * * *
2338882 ACACTTTGAGTTTGTAGCTAAAATTTTTTGTGCATGCC-AAAAAAATCCAAGGATCACGTCTACC
192 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * *
2338946 AAGTTTGGGGCAAAAACTCCTTCTGGAAAAATTTTAAAAAAATCTCGAACTGTAAAAAGTTTCAA
257 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAA
* *
2339011 AAATCATCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
322 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
*
2339076 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAAAGATGTGCCTAAAC
387 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
* * *
2339141 CCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCTCGCC
452 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * *
2339206 CGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTGTAAGATCAGACCAA
517 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAA
* ** * * * * ** * *
2339271 ACTGAGGGTTGTGGCAGCACGATTGGCAACACCTAGGGGGGACCCGGTCGATCCCCGGCTTACGC
582 ACCGAGGGTTACGGCAGCAGGATCGACAGCACGAAGGGGGGACCCGATCGATCCCCGGCTTGCGC
* *
2339336 ATCCTGCCCCTCTGGCCGACTGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
647 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
2339401 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTG
712 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTA
* * * * ***
2339466 CAGGTGCACATCCTGGGCTC-GAGCATGTGTTGGTGCCGTA-TTTTTTT-G---AAAGC-CCA--
777 CGGGTGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATC
* * ** * *
2339522 G--GGACCATCGTCGGAGAACCTGATCGGTAGCATTAGGGTT-TCGACGATTGGAGG
841 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGCGATTGG-GG
* * * *
2339576 GGCGGGGGGGTGTGCGCACATAATGTGTGATGGGTGCTGCTACTTGGCCCTTATATTAG-CCCCT
1 GG-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
2339640 ATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
65 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
2339705 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
130 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * *
2339770 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATTCAAGGATTATGTCTACCAAG
195 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * * *
2339835 TTTGGGGCCAAAACTCCTTCTGAGAAAATTTAAAAAAAATCCCAAATCGTAAAAA-TTTCCTAAA
260 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTT-CAAAA
* **
2339899 ATCGTGAAAAATAGAAAATGAGTCGTCTTAACATGAAACTTCACATGAAGGCTTAAGGGACCATT
324 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
*
2339964 GTATGACTTTACAAGCCATAAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
389 GTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* *
2340029 CACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCC
453 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * * *
2340094 GCCCCCTCGTTTCGTTGGTTAGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGA
518 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAA
* * ** * *
2340159 CCGAGGGTTATGGCAGTAGGATCGGTAGCACGTAGGGGGTGACCCGATCGATCCCCGGCTTGTGC
583 CCGAGGGTTACGGCAGCAGGATCGACAGCACGAAGGGGG-GACCCGATCGATCCCCGGCTTGCGC
* * * * *
2340224 ATCCTGCCCCTCTGGTCGGTTGAGCACCCGCGCGCTCGTTTCTTGGGTTGACTTAGGCATACGGA
647 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * * * * *
2340289 GTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCAAGTGTAATATC-AAACTGAATCAAGGGTT
712 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAG-ACCGAGGGTT
** * * * ** * *
2340353 GTGGGTGCACATGCTGGGCTCGGGCATTTACTGGTGTTGCATTTTTTTTTCACCCAGGGCACCAT
776 ACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCAT
* * * *
2340418 CG-CTGGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATTGCGGGGG
840 CGTC-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATT---GGGG
*
2340477 CGGGGGAGAGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
1 -GGGGG-G-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
2340542 CTATCCCTCATCGAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
63 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
2340607 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
128 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
* **
2340672 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTCTACCA
193 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * *
2340737 AGTGTGGGGCCACAAGTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAA
258 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAA
* * *
2340802 AATCGTGAAAAATAGAAAACGAGTCTTTTTGCCGTGAAACTT-ACATGAAGGCTTAAGGGACCAT
323 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* *
2340866 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTACCTAAACC
388 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* * * * * ** *
2340931 CACCTACCACCCTATCAATCCATGGCTTGTGCATCTCGCCTCTCTGGTCGATGTAGTGCCCGCCT
453 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * * * *
2340996 GCGCGTTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGA
518 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAA
* * ** * * * *
2341061 CTGATGGTTACGATAGCAGGATCGACAGCACGCAATGGGTGACCC-AGCCGATCCCCGGCTTGAG
583 CCGAGGGTTACGGCAGCAGGATCGACAGCACG-AAGGGGGGACCCGA-TCGATCCCCGGCTTGCG
* * * * * * * **
2341125 CATTCTGCCCCTCCGGTCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTAACTTAGGCACACAA
646 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* ** * *
2341190 AGTTCATTCCCAGT-TGAAGCATATGGAGTTCATTCCCAGTGTAAGATCGGACTGGGCTGAGGGT
711 AGTTCATTCCCAGTCT-AAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGT
* *
2341254 TACGGGTGCACATGCTGGGCTCTAGG-ATGTGCTGATGCCGCATTTTTTTTCGCTCGGGGCACCA
775 TACGGGTGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCA
** ** * * * *
2341318 TCACCGGAGCATCACCGGAGAACCTGATCGACGGCATTAGGGTT-TCGGTGATTGGGG
839 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGCGATTGGGG
** * *
2341375 GGTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCTCCCTA
1 GGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * ** * *
2341440 TCTCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAAAATCTGAGATTTTATAGGTTTGCTG
66 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
2341505 CCAGTAGCCATTAACGTGTCTGAAATGGGTATACTTTTTTCAAATGGTCACAAAATCCTATACAC
131 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* *
2341570 TTCGAGTTTTTAGCTAAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
196 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * **
2341635 TTGGGGCCAAAACTCTTTCTGAAAAAATTTTTAAAAAATCTCGAGCCGTAAAAAGTTTTGAAAAT
261 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
* *
2341700 CATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
326 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* * *
2341765 ATGAATTTACAAGCCATTAAAAATGGCATTGGCATGGTAGAAATATAAAGATATGCCTAAACCCA
391 ATGAATTTACAAGCCA-TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
2341830 CCTACCACCCTAACGATCCACGGCTTGCACATCTCGCCTCTTTGGCCGGCGTAGTGCCCACCCGC
455 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * *
2341895 CCGCTCGTTTCGTCAGTTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGACTGGACCAGACC
520 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACC
* * * * * * ** *
2341960 GAGGGTTATGGCAGTAGGATCGGCAGCACGCAGGGGGGACCCGGTTGATCCCCAACTTGCACATC
585 GAGGGTTACGGCAGCAGGATCGACAGCACGAAGGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * * *
2342025 CTACCCCTCTGGTCGGCTGAGCGCCCGCAAGCTCGTCTCGTGGGTTGACTTAGGCATACGGATTT
650 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* ** * **
2342090 CATTCCCAGTCTAAGCATACGGAGTTGATTCCCAGTGTAAGATCGGACTGGACCAAGGGTTGTGG
715 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGG
** ** **
2342155 GTGCACATGCTGGTATCAGGCATGTGCTGGTGCTACATTTTTCTTTCGCCCGGGGCACCATCACC
780 GTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT-TTTCGCCCGGGGCACCATCGTC
* * * * *
2342220 GGAGCATCATCAGAGAACCTAACCGGCGGCATTGGGGTACTGGTGATTGGGGG
844 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATT-GGGG
* * *
2342273 GCCGGGGGGGGTGTGCGCACTTGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCT
1 G--GGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
2342338 TATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGC
64 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
2342403 TGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
129 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
** * *
2342468 AGGTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAA
194 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * *
2342533 GTTTGGGGCCAAAAATCCTTCT-AGAAAAATTTTAAACAAATCCCGAACCGTAAAAAGTTTAAAA
259 GTTTGGGGCCAAAACTCCTTCTGA-AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAA
** *
2342597 AATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCAT
323 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* **
2342662 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGTGTAAACC
388 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* * * * *
2342727 CACCTACCAGCCTATCGATCCACGGCTTACGCATCTCGCCTCTCTGGCCAGCGTAGTGCTCGCCC
453 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC
* * *
2342792 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAAA
518 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAA
* * * * * * * ** * *
2342857 CCGAGGGTTACGGTAGTAGGATTGATAGCAGGTAGGGGGGGACCCGACCGATCATCAGCTTGCAC
583 CCGAGGGTTACGGCAGCAGGATCGACAGCACG-AAGGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * *
2342922 ATCCTGCCCCACCGGTCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
647 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
2342987 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCGGA-CAGGACCGAGGGTT
712 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCA-GACCGAGGGTT
* * * *
2343051 ACGGGTGCACATGCTGGGCTC-GAGCATGTGCTGATGCCACATTTTTTTTTCGCTCGAGG---CA
776 ACGGGTGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCA
*
2343112 ----C----CATCGTCGGAGAACCTGACCGGCGGCATTGAGGTTCTGGCGATTGAGGG
839 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATTG-GGG
* *
2343162 GCCGGGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATCGGCCCCC
1 G--GGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
2343227 TATCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGC
64 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
2343292 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
129 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* * * * * *
2343357 ACTTTGAGATTTTGGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
194 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* **
2343422 G-TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTTTGAAA
259 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* *
2343486 ATCGT-AAACAATAGAAAACGAGTCATCTTGTCATGAAACTTCACATGAAGGCTTAAGGGACCAT
324 ATCGTGAAA-AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* * *
2343550 TGTCTGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAAAAATATGAAGATGTGCCTAAACC
388 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* * * *
2343615 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCCGACGTAATGCCCG-TC
453 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC
* * *
2343679 GACCCACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
518 G-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
2343733 AAGCAGACTG
Statistics
Matches: 13111, Mismatches: 1585, Indels: 405
0.87 0.10 0.03
Matches are distributed among these distances:
875 2 0.00
876 26 0.00
877 18 0.00
878 4 0.00
879 3 0.00
880 33 0.00
881 6 0.00
882 71 0.01
883 81 0.01
884 13 0.00
885 220 0.02
886 337 0.03
887 431 0.03
888 540 0.04
889 347 0.03
890 246 0.02
891 386 0.03
892 73 0.01
893 168 0.01
894 1669 0.13
895 1255 0.10
896 1855 0.14
897 1206 0.09
898 882 0.07
899 1111 0.08
900 550 0.04
901 73 0.01
902 339 0.03
903 98 0.01
904 384 0.03
905 158 0.01
906 526 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACCG
AGGGTTACGGCAGCAGGATCGACAGCACGAAGGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGGG
TGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGG
AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATTGGGG
Found at i:2337636 original size:26 final size:26
Alignment explanation
Indices: 2337600--2337652 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2337590 GTTGACTTAG
2337600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2337626 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2337652 G
1 G
2337653 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2338529 original size:26 final size:26
Alignment explanation
Indices: 2338494--2338546 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2338484 GTTGACTTAG
2338494 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2338520 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2338546 G
1 G
2338547 ATCGGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2339428 original size:26 final size:26
Alignment explanation
Indices: 2339392--2339444 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2339382 GTTGACTTAG
2339392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2339418 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2339444 G
1 G
2339445 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2340316 original size:26 final size:26
Alignment explanation
Indices: 2340280--2340331 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2340270 GTTGACTTAG
*
2340280 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCAAGTGTAA
2340306 GCATACGGAGTTCATTCCAAGTGTAA
1 GCATACGGAGTTCATTCCAAGTGTAA
2340332 TATCAAACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTGTAA
Found at i:2342120 original size:26 final size:26
Alignment explanation
Indices: 2342078--2342130 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2342068 GTTGACTTAG
*
2342078 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2342104 GCATACGGAGTTGATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2342130 G
1 G
2342131 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2343007 original size:26 final size:26
Alignment explanation
Indices: 2342978--2343030 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2342968 GTTGACTTAG
2342978 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2343004 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2343030 G
1 G
2343031 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2346061 original size:14 final size:14
Alignment explanation
Indices: 2346042--2346069 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2346032 CCACATTGTC
2346042 TGTCCTCACCACGA
1 TGTCCTCACCACGA
2346056 TGTCCTCACCACGA
1 TGTCCTCACCACGA
2346070 ACTTCGACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.43, G:0.14, T:0.21
Consensus pattern (14 bp):
TGTCCTCACCACGA
Found at i:2350208 original size:26 final size:26
Alignment explanation
Indices: 2350172--2350224 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2350162 GTTGACTTAG
2350172 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
2350198 GCATACGGAGTTGATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2350224 G
1 G
2350225 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2351916 original size:871 final size:867
Alignment explanation
Indices: 2350198--2354920 Score: 5903
Period size: 871 Copynumber: 5.4 Consensus size: 867
2350188 CCCAGTCTAA
* * * * * ** *
2350198 GCATACGGAGTTGATTCCCAGTGTAAGATCAGACCGGATCAAGGGTTGCCAGTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGAACCGAGGGTTGCGGGTGCACATGCTGGG
* * **
2350263 CTTGGACATGTGCTGGTGCCGCATTTTGTTTTTGCCCGGGGCACCATCGTCGGAGCATCGTTGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTT-TTTTT-CCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * *
2350328 GAACCTGACCGACGGGATTGGGG-TCCGGTGATT-GGGGGGCGGAGGGGATGTGCACACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCC-GCGATTGGGGGGGCGG-GGGGGTGTGCACACATGATG
*
2350391 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
2350456 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
2350521 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAAGTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
2350586 TATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAATTTTGGAG-CAAAACGT-CTTCTGAA
387 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCTGAA
*
2350649 AAAATTTTAAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTC
451 AAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
2350713 GTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
2350778 TGGCATTGGCATGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTTGATCCATGG
580 TGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
* * *
2350843 CTTGCGCATCCCGTCTGTCTGGCCGACGTAGTGCCCGCCCGCTCGCTCATTTCGTCGGTTGGCTT
645 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
2350908 AGGCATACGGAGTTCATTCCCAATCTAAGATCCGACCGGA-TAGAGGGTTGTGGCAGCAGGATCG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTG-CGCAGCAGGATCG
* * * * * *
2350972 ACAGTACGCA-AGGGGAGTCCCGACCGATCCCCGACTTACGCATCCTGCCCCTCTGACCGGCTGT
773 ACAGCACGTAGAGGGGA--CCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
*
2351036 GCGCGCACACGCTCTTTTCGTGGGTTGACTTAG
836 GCGC-CGCACGCTCTTTTCGTGGGTTGACTTAG
* * *
2351069 GCATACAGAGTTCATTCCCAGTGTAAGATCGGACCGAACCGAGGGTTACGTGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGAACCGAGGGTTGCGGGTGCACATGCTGGG
* * * ** ***
2351134 CTCAGGCATGTGCTGGTGCCTCATTTTTTTTTTCCGGGGCACCATCGTCGGATTATCATTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
2351199 ACCTGACCGGTGGCATTAGGGTTCCAGCGATTGGGGGGGACGGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCC-GCGATTGGGGGGG-CGGGGGGGTGTGCACACATGATGTG
*
2351264 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
2351329 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTCAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2351394 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* *
2351459 TGCATGCCAAC-AAAATACAAGGATCACATGTACCAAGTTTGGGGCCAAAACTCCTTCT-AGAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA-AAA
* * * *
2351522 AATTTTAAACAAATCTCGAACCGTAAAAAGTTTAAAAAATTGTGAAAAATAGAAAATGAGTCGTC
453 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
2351587 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2351652 CATTGGCATGGCAAAAATATGGAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCATGGCTT
583 CATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
* * *
2351717 GCGCATCCCGTCTCTCTGG-CGACGTAGTACCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
648 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
2351781 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGCAGCTGTAAGATCGACAA
713 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC-GCAGCAGGATCGACAG
* *
2351846 CACGTAGAGGGGACCCGACCGATCCCCTGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCC
777 CACGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG-CC
* *
2351911 GCACACTTTTTTCGTGGGTTGACTTAGGCAAACGG
841 GCACGCTCTTTTCGTGGGTTGACTT------A--G
* * *
2351946 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCGGATCGGACCAAGGGTT
1 -G--------CA---T-A-C----GGAGTTCATTCCCAGTGTAAGATCGGACCGAACCGAGGGTT
* * * **
2352011 ACTGGTGCACATGCTGGGCT-GGAGCATGTGCTGGTTCCGCATTCTTTTTCGCCCGGGGCACCAT
48 GCGGGTGCACATGCTGGGCTCGG-GCATGTGCTGGTGCCGCATT-TTTTTTTCCCGGGGCACCAT
* * * * *
2352075 CATCGGAGCATCACCAGAGAACTTGACCGGCGGCATTGGGGTTCCCGCGATTGGGGGGTGAGGGG
111 CGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT-CCGCGATTGGGGGG-GCGGGG
* * *
2352140 GTGTGTG--CACATGATGCGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
174 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
2352203 ATCAAAGCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
239 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
* * * *
2352268 GCCATTAAAGTGTCTAAAAATGGGGACACCTTTTACAAATGGTCACAAAATCCTGTACACTTCGA
304 GCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
2352333 GTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTGTACTAAGTGTGGG
368 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
2352398 GCCAAAACGCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCCAAAATCGTGA
433 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGA
* *
2352463 AAAATAGAAAATGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
498 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
* * * * *
2352528 TTTACAAGCCATAAAAATTGCTTTGGCACGGCAAAAATATGAAGATGTACCTAAACTCACCTACC
563 TTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
2352593 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC-A-GTTAGTGCCCGCCCGCCCGCT
628 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACG-TAGTGCCCGCCCGCCCGCT
* * * * *
2352656 CGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGG
692 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG
* * * ** * *
2352721 TTGCGACAGCAGGATCGGCAGCACATAGGGGGGACCCGACATATCCCTGGCTTACGCATCCTGCC
757 TTGCG-CAGCAGGATCGACAGCACGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCC
* * * ** * * * *
2352786 CTTCTGGCCGGTTGAGTGTTTGCACTCTCGTTTCATTGGTTGACTTAG
821 CCTCTGGCCGGCTGAGCG-CCGCACGCTCTTTTCGTGGGTTGACTTAG
* * * ** * * * *
2352834 GCATACGGAGTTCATTCCAAGTGCAAGATCAGATTGGACTGAGGGTTGTGGGTGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGAACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
2352899 -TCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACTATCGCCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTT-TCCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
2352963 AACCTGACCGGCGGCGTTGGGGTTCCGACGATTGAGGGGTG-GGGGGCGTGTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCG-CGATTG-GGGGGGCGGGGGGGTGTGCACACATGATGT
* *
2353027 GCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * *
2353092 CAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2353157 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
2353222 GTGTATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAA
388 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * *
2353287 AATTTTAAAAAAATCCCGAACC-TAAAAAACTTTCAAAAATCATGAAAAATA-AAACACGAGTCT
453 AATTTTAAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAA-ACGAGTCG
* *
2353350 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATTAAAAT
516 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
2353415 GGCATTGGCATAGCAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCATAGC
581 GGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
* * * *
2353480 TTGCGCATCCCGCCTCTCTAGCCGACGTAGTGCCCGCCCGCCCTCTCGTTTCGTCGATTGGCTTA
646 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * * * *
2353545 GGCATACGAAGTTCATTCCCAGTCAAAGCTCAGATCAAACCGAAGGTTGTGGCAGCAGGATCAAC
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG-CGCAGCAGGATCGAC
* * * * * * *
2353610 AGCACGCAGGGGGGACCCGGCCGATCCCCGGCTCGTGCATCCTGCCCCTCTAGCCGGCTGAGCAC
775 AGCACGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC-G
* * *
2353675 CCGCACGCTCGTTTCATGGGTTGAGTTAG
839 CCGCACGCTCTTTTCGTGGGTTGACTTAG
* * * *
2353704 GCATACGGAGTTTATTCCCAGTGTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGAACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * * * *
2353769 CTTGGGCATGTGTTGGTGTCGTATTTTTTTTTGCTCTGGGAACCATCGTCGGAGCATCGCTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTT-CCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
2353834 AACCTAACCGACGGCATTGGGGTTCCGGCGATTGGAGGGCGG-GGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCC-GCGATTGG-GGG-GGCGGGGGGGTGTGCACACATGATG
*
2353898 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* * *
2353963 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGATTTGCTGCCAGTAGCTATTAAAGTATCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
2354028 ATGGGGACACTTTCTTCAAATGGTCACCAAATCCTGTACATTTAGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
2354093 TGTACATGTCAACAAAAATACAAGGATCACGTCTACCATGTTTCGGGCCAAAACTCCTTTTGAAA
387 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * ** *
2354158 AAATTTTTAAAAAATCTCAAACCGAAAAAAGTTTCAAAAATTATAAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
2354223 CTTGCCACGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
2354288 GCATTAGCAAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
582 GCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
* * ** *
2354353 TACGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCTTGCTCGTTTCGTCGGTCGGCTTAG
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
2354418 GCATACGAATTTCATTGCCAGTCTAAGATCGAACTAGACTGAAGGCTGCGGTAGCAGGATCGACA
712 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC-GCAGCAGGATCGACA
* * * * * *
2354483 GCACATAAAGGGGGACCCTG-CCGATCCCCGGTTTGCCCATCCTGCCCCTCTGGCAGACTGAGCG
776 GCACGTAGA-GGGGACCC-GACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC-
2354547 GCCGCACGCTCATTTT-GTGGGTTGACTTAG
838 GCCGCACGCTC-TTTTCGTGGGTTGACTTAG
*
2354577 GCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTGTAAGACCAGATCGGAC
1 GCATACGGAGTTCATTCCC-A-GT--G--TA---AG---A-T--C---G---GACC-GA----AC
* * * * *
2354642 CAAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACACTTTTTTTTCACTTGG
40 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTC-C-CGG
* * * * * *
2354707 GGTACCATCGTCGAAGCATCGTCGGAGAACCTAACCGGCGGCATTGGGGTTCTAGCGAGTGGGGG
103 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTC-CGCGATTGGGGG
* * * * * *
2354772 GGC-AGGGGGTGTGCGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTGTATTGGGCCCCT
167 GGCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2354836 ATCCCTCTTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACT-GGTTTGC
232 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-TAGGTTTGC
2354900 TGCCAGTAGCCATTAAAGTGT
296 TGCCAGTAGCCATTAAAGTGT
2354921 TTACTGGTTT
Statistics
Matches: 3360, Mismatches: 391, Indels: 175
0.86 0.10 0.04
Matches are distributed among these distances:
868 22 0.01
869 502 0.15
870 545 0.16
871 608 0.18
872 547 0.16
873 87 0.03
874 6 0.00
875 3 0.00
876 1 0.00
877 2 0.00
878 1 0.00
879 4 0.00
882 2 0.00
885 1 0.00
886 3 0.00
887 1 0.00
888 2 0.00
889 1 0.00
890 2 0.00
891 1 0.00
894 134 0.04
895 151 0.04
896 481 0.14
897 5 0.00
898 137 0.04
899 56 0.02
900 55 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (867 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGAACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGCGATTGGGGGGGCGGGGGGGTGTGCACACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGCAGCAGGATCGACAGCACG
TAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCGCACG
CTCTTTTCGTGGGTTGACTTAG
Found at i:2352829 original size:896 final size:885
Alignment explanation
Indices: 2349188--2354920 Score: 6464
Period size: 896 Copynumber: 6.5 Consensus size: 885
2349178 CAGGGTGTGA
* * * * *
2349188 CACA-AGGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCT
1 CACATAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCC
* * * * ** *** * *
2349252 GCACGTTGGTTTTATGGGTTGACTT---CATTCCTAG-TC-TAAGCA-TAC-GGAGTTCATTCCC
66 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGCTAGAGTTCATTCCC
* * * * * ** *
2349310 AGTGTAAGATCGGACCAGACTGAGGGTTTCGGGTGCACATG-TAGGGCTCGAACTTGTGCTGGTG
131 AGTGTAAGATC-GATCGGACCGAGGGTTACTGGTGCACATGCT-GGGCT-GGGCATGTGCTGGTG
* * * * * *
2349374 CCG-ATTTTTTTT-GCCC-GGGTACCATC-ACTGGAGCAAACGCCGGAGAACCTGATCGGCGGCA
193 CCGCATTTTTTTTCACCCGGGGCACCATCGTC-GGAGC-ATCACCGGAGAACCTGACCGGCGGCA
* * * * * *
2349435 TTAGGGTTCC-GACAAATTTGGGGGGCAAGGGGGTGTGCGCACATGATGTGAGAATGGGTGCTAG
256 TTGGGGTTCCAG-C-GA-TTGGGGGG-GAGGGGGTGTGTGCACATGATGTGCG-ATGGGTGCTGG
* *
2349499 TACTTGGCCCTTTATATTGGCGCCCCTA-CCCTCACTCAAACCTTGAGTACTCACACGCCCTTTA
316 TACTTGGCCC-TTATATTGGC-CCCCTATCCCTCA-TCAAACCTTGAGAACTCACAC-CCCCTTA
**
2349563 AAGAGCATTTGAGATTTTAATAGGTTTGCGTGCCAAGTAGCCATTAAAGTGTCTGGTAATGGGGA
377 AAGAGCATTTGAGATTTT-ATAGGTTTGC-TGCC-AGTAGCCATTAAAGTGTCT-AAAATGGGGA
* * * ** *
2349628 CACTTTTTTCCAAATGGTCACAAAATCATTTAACACGTTCGAGTTTTTCCCTGAATT-TTTGTGT
438 CACCTTTTT-CAAATGGTCACAAAATCCTGT-ACAC-TTCGAGTTTTTAGCTGAATTGTTT-TAT
* * * *
2349692 GCATGCCAACAAAAATACAATGATCATGTCTACCAAGTTTGAGGCCAAAAATCCTTCTG-AAAAA
499 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * * * * *
2349756 TTTTAAAAAAAATCCCGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAAAAAATGGGTCGTCT
564 TTTT-AAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
2349821 TGCCATGAAACTTCACATGCAA-GCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGC
628 TGCCATGAAACTTCACATG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
2349885 CATTGGCATGGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCATGGCTT
692 CATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
* * * * * * * *
2349950 GCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCTGCCCGTCCGCTCGTTACATCAGTTGGCTTAGG
757 GCGCATCCCGTCTCTCTGGCC-ACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * **** * * * * * *
2350015 CATAC-AGAGTTCATTCCTAGTCTAAGATCAGATTGGA-TCGAGGGTTACGATAGTAGGATTGGC
821 CATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAAACT-GAAGGTTGCGACAGCAGGATCGAC
2350078 AG
884 AG
*** * * *
2350080 CACACT-GGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGAC
1 CACA-TAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCC
* * * * *
2350144 CACTCGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGT
65 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--GC-TA--GAGT
* * * * * ** * *
2350209 TGATTCCCAGTGTAAGATCAGACCGGATCAAGGGTTGCCAGTGCACATGTTGGGCTTGGACATGT
123 TCATTCCCAGTGTAAGATC-GATCGGACCGAGGGTTACTGGTGCACATGCTGGGC-TGGGCATGT
** ***
2350274 GCTGGTGCCGCATTTTGTTTTTGCCCGGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGACCG
186 GCTGGTGCCGCATTTT-TTTTCACCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
* * * * * **
2350339 ACGGGATTGGGG-TCCGGTGATTGGGGGGCGGAGGGGATGTGCACACATGATGTGCGATGGGTGC
250 GCGGCATTGGGGTTCCAGCGATT-GGGGG-GGAGGGGGTGTGTGCACATGATGTGCGATGGGTGC
* *
2350403 TGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTTGAGAACTCACACCCCTTTAA
313 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
* * *
2350468 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
378 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCT
* *
2350533 TTTTCAAAAGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAAGTT-TTTTATGCATGCCA
443 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTGTTTTATGCATGCCA
* * *
2350597 AGAAAAATACAAGGATCACGTCTACCAATTTTGGAG-CAAAACGT-CTTCTGAAAAAATTTTAAA
507 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCTGAAAAAATTTTAAA
* ** *
2350660 AAAATC-CTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCCTGCCATG
571 AAAATCTC-GAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
2350724 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
635 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
2350789 TGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTTGATCCATGGCTTGCGCATCC
700 TGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
* * * *
2350854 CGTCTGTCTGGCCGACGTAGTGCCCGCCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGA
765 CGTCTCTCTGGCC-ACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAA
* * ** * * *
2350919 GTTCATTCCCAATCTAAGATCCGACCGGA-TAGAGGGTTGTGGCAGCAGGATCGACAG
829 GTTCATTCCCAGTCTAAGATCGGACCAAACT-GAAGGTTGCGACAGCAGGATCGACAG
* * * * * *
2350976 TACGCA-AGGGGAGTCCCGACCGATCCCCGACTTACGCATCCTGCCCCTCT-GACCGGCTGTGCG
1 --CACATAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTAG-CCGGCTGAGCG
* * * * *
2351039 CGCACACGCTCTTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTG-TA-AG---A-T
63 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGCTAGAGTTCATT
* *
2351098 --C---G---GA-C---CGAACCGAGGGTTAC-GTGTGCACATGCTGGGCTCAGGCATGTGCTGG
128 CCCAGTGTAAGATCGATCGGACCGAGGGTTACTG-GTGCACATGCTGGGCT-GGGCATGTGCTGG
* ** ** ** *
2351150 TGCCTCATTTTTTTT-TTCCGGGGCACCATCGTCGGATTATCATTGGAGAACCTGACCGGTGGCA
191 TGCCGCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCA
* * *
2351214 TTAGGGTTCCAGCGATTGGGGGGGACGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTA
256 TTGGGGTTCCAGCGATTGGGGGGGA-GGGGGTGTGTG--CACATGATGTGCGATGGGTGCTGGTA
2351279 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
318 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
* * * *
2351344 ATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTTTTC
383 ATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTC
* * *
2351409 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCATGCCAAC-AAA
448 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAA
* * *
2351473 ATACAAGGATCACATGTACCAAGTTTGGGGCCAAAACTCCTTCT-AGAAAAATTTTAAACAAATC
513 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA-AAAAATTTTAAAAAAATC
* * ** *
2351537 TCGAACCGTAAAAAGTTTAAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
577 TCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
2351602 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAA
642 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAA
* *
2351667 AATATGGAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
707 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
* * * * *
2351732 CTGGCGACGTAGTACCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
772 CTGGCCACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTC
* * * * *
2351797 CCAGTCTAAGATCGGACCAAACTGAGGGTTGC-AGCTGTAAGATCGACAA
837 CCAGTCTAAGATCGGACCAAACTGAAGGTTGCGA-CAGCAGGATCGACAG
* * *
2351846 CACGTAGAGGGGACCCGACCGATCCCCTGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCC
1 CACATAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCC
* ** * *
2351911 GCACACTTTTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
66 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--GC-TA--GAGTT
*
2351976 CATTCCCAGTGTAAGATCGGATCGGACCAAGGGTTACTGGTGCACATGCTGGGCTGGAGCATGTG
124 CATTCCCAGTGTAAGATC-GATCGGACCGAGGGTTACTGGTGCACATGCTGGGCTGG-GCATGTG
* * * * * *
2352041 CTGGTTCCGCATTCTTTTTCGCCCGGGGCACCATCATCGGAGCATCACCAGAGAACTTGACCGGC
187 CTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGC
* * *
2352106 GGCATTGGGGTTCCCGCGATTGGGGGGTGAGGGGGTGTGTGCACATGATGCGTGATGGGTGCTGG
252 GGCATTGGGGTTCCAGCGATTGGGGGG-GAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGG
* * *
2352171 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCCACTTAAAGA
316 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
2352236 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAATGGGGACACCTTT
381 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAATGGGGACACCTTT
*
2352301 TACAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACA
445 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACA
* * * *
2352366 AAAATACAAGGATCACGTGTACTAAGTGTGGGGCCAAAACGCCTTCTGAAAAAATTTTAAAAAAA
510 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* * * *
2352431 TCTCGAACCATAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGGGTCGTCTTGCCATGAAACT
575 TCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
2352496 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCTTTGGCACGGCA
640 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* *
2352561 AAAATATGAAGATGTACCTAAACTCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
705 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
*
2352626 CTCTGGCCA-GTTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC-AGAGTTC
770 CTCTGGCCACG-TAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTC
* ** * * *
2352689 ATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGCGACAGCAGGATCGGCAG
833 ATTCCCAGTCTAAGATCGGACCAAACTGAAGGTTGCGACAGCAGGATCGACAG
** * * * * * * ***
2352742 CACATAGGGGGGACCCGACATATCCCTGGCTTACGCATCCTGCCCTTCTGGCCGGTTGAGTGTTT
1 CACATAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCC
* * *
2352807 GCACTCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCAAGTGC-A-AG---A-T--C
66 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGCTAGAGTTCATTCCC
* * *
2352864 ------AGAT---T-GGACTGAGGGTT-GTGGGTGCACATACTGGG-TCGGGCATGTGCTGGTGC
131 AGTGTAAGATCGATCGGACCGAGGGTTACT-GGTGCACATGCTGGGCT-GGGCATGTGCTGGTGC
* * *
2352917 CGCATTTTTTTTCACCCGGGGCACTATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCGTTG
194 CGCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTG
** *
2352982 GGGTTCC-GACGATTGAGGGGTGG-GGGGCGTGTGCACACATGATGTGCGATTGGTGCTGGTACT
259 GGGTTCCAG-CGATTG-GGGG-GGAGGGG-GTGTGTGCACATGATGTGCGATGGGTGCTGGTACT
* *
2353045 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCAT
320 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
* *
2353110 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
385 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAA
* * * *
2353175 ATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTGTTTTGTGTATGCCAACAAAAAT
450 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAAT
* *
2353240 ACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
515 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCG
* *
2353305 AACC-TAAAAAACTTTCAAAAATCATGAAAAATA-AAACACGAGTCTTCTTGCCATGAAACTTCA
580 AACCAT-AAAAAGTTTCAAAAATCATGAAAAATAGAAA-ACGAGTCGTCTTGCCATGAAACTTCA
* * * *
2353368 CATGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATTAAAATGGCATTGGCATAGCAGAA
643 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAA
* * *
2353433 ATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGCCTCTC
708 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTC
* * *
2353498 TAGCCGACGTAGTGCCCGCCCGCCCTCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTC
773 TGGCC-ACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTC
* * * * * * * *
2353563 CCAGTCAAAGCTCAGATCAAACCGAAGGTTGTGGCAGCAGGATCAACAG
837 CCAGTCTAAGATCGGACCAAACTGAAGGTTGCGACAGCAGGATCGACAG
** * * * *
2353612 CACGCAGGGGGGACCCGGCCGATCCCCGGCTCGTGCATCCTGCCCCTCTAGCCGGCTGAGCACCC
1 CACATAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCC
* *
2353677 GCACGCTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTTATTCCCAGTG-TA-AG---A-T--C
66 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGCTAGAGTTCATTCCC
* * * *
2353734 ------AGA-C--T-GGACCGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGTTGGTGTC
131 AGTGTAAGATCGATCGGACCGAGGGTTACTGGTGCACATGCTGGGC-TGGGCATGTGCTGGTGCC
* ** * * * * * * *
2353789 GTATTTTTTTTTGCTCTGGGAACCATCGTCGGAGCATCGCTGGAGAACCTAACCGACGGCATTGG
195 GCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGG
* * *
2353854 GGTTCCGGCGATTGGAGGGCGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
260 GGTTCCAGCGATT-G-GGG-GGGAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTG
*
2353919 GCCCTTATATTGGCACCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
322 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
2353984 GAGATTTTATAGATTTGCTGCCAGTAGCTATTAAAGTATCTGAAATGGGGACA-CTTTCTTCAAA
387 GAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTT-TTCAAA
* * * * * * *
2354048 TGGTCACCAAATCCTGTACATTTAGAGTTTTTAGCTGAATTTTTTTGTACATGTCAACAAAAATA
451 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATA
* * * * *
2354113 CAAGGATCACGTCTACCATGTTTCGGGCCAAAACTCCTTTTGAAAAAATTTTTAAAAAATCTCAA
516 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGA
* * *
2354178 ACCGA-AAAAAGTTTCAAAAATTATAAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACA
581 ACC-ATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* * *
2354242 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCAAGGCAGAAAT
645 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
* * *
2354307 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCTCTCTG
710 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTG
* ** * * *
2354372 GCCGATGTAGTGCCCGCCCGCTTGCTCGTTTCGTCGGTCGGCTTAGGCATACGAATTTCATTGCC
775 GCC-ACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCC
* * * * **
2354437 AGTCTAAGATCGAACTAGACTGAAGGCTGCGGTAGCAGGATCGACAG
839 AGTCTAAGATCGGACCAAACTGAAGGTTGCGACAGCAGGATCGACAG
* * * * * * *
2354484 CACATAAAGGGGGACCCTG-CCGATCCCCGGTTTGCCCATCCTGCCCCTCTGGCAGACTGAGCGG
1 CACAT-AGGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGC
* ** *
2354548 CCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAG
64 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC-A-GT--GC-TA--GAG
* * * *
2354613 TTCATTCCCAGTGTAAGACCAGATCGGACCAAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATG
122 TTCATTCCCAGTGTAAGATC-GATCGGACCGAGGGTTACTGGTGCACATGCTGGGCT-GGGCATG
* ** * * ** *
2354678 TGCTGGTGCCACACTTTTTTTTCACTTGGGGTACCATCGTCGAAGCATCGTCGGAGAACCTAACC
185 TGCTGGTGCCGCA-TTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * * *
2354743 GGCGGCATTGGGGTTCTAGCGAGTGGGGGGGCAGGGGGTGTGCGCACATGATGTGCAATGGGTGC
249 GGCGGCATTGGGGTTCCAGCGATTGGGGGGG-AGGGGGTGTGTGCACATGATGTGCGATGGGTGC
* * * *
2354808 TAGTACTTGGCCCTTGTATTGGGCCCCTATCCCTCTTCAAACCTTGAGAACTCACACCCCCTTAA
313 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
2354873 AGAGCATTTGAGATTTTACT-GGTTTGCTGCCAGTAGCCATTAAAGTGT
378 AGAGCATTTGAGATTTTA-TAGGTTTGCTGCCAGTAGCCATTAAAGTGT
2354921 TTACTGGTTT
Statistics
Matches: 4202, Mismatches: 495, Indels: 282
0.84 0.10 0.06
Matches are distributed among these distances:
868 10 0.00
869 553 0.13
870 519 0.12
871 554 0.13
872 542 0.13
873 98 0.02
874 2 0.00
875 8 0.00
876 2 0.00
877 1 0.00
878 2 0.00
879 3 0.00
881 2 0.00
882 4 0.00
883 1 0.00
884 3 0.00
885 2 0.00
886 1 0.00
887 3 0.00
888 3 0.00
890 3 0.00
891 3 0.00
892 6 0.00
893 73 0.02
894 135 0.03
895 133 0.03
896 794 0.19
897 167 0.04
898 154 0.04
899 66 0.02
900 81 0.02
901 20 0.00
902 4 0.00
903 10 0.00
904 25 0.01
905 26 0.01
906 15 0.00
907 86 0.02
908 35 0.01
909 8 0.00
910 30 0.01
911 14 0.00
912 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
CACATAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGCTAGAGTTCATTCCC
AGTGTAAGATCGATCGGACCGAGGGTTACTGGTGCACATGCTGGGCTGGGCATGTGCTGGTGCCG
CATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGG
GTTCCAGCGATTGGGGGGGAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAATGGTC
ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCAT
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCACG
TAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
GATCGGACCAAACTGAAGGTTGCGACAGCAGGATCGACAG
Found at i:2356284 original size:26 final size:26
Alignment explanation
Indices: 2356232--2356284 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2356222 GTTGACTTAG
* *
2356232 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
*
2356258 GCATACGGAGTTCATTCCCAGAGTAA
1 GCATACGGAGTTCATTCCCAGACTAA
2356284 G
1 G
2356285 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:2357089 original size:26 final size:26
Alignment explanation
Indices: 2357051--2357103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2357041 GTTGACTTAG
*
2357051 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2357077 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2357103 G
1 G
2357104 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2364266 original size:26 final size:26
Alignment explanation
Indices: 2364216--2364268 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2364206 GTTGACTTAG
* *
2364216 GCATACGGAGTTCATTCCCGATCTAA
1 GCATACAGAGTTCATTCCAGATCTAA
2364242 GCATACAGAGTTCATTCCTAG-TCTAA
1 GCATACAGAGTTCATTCC-AGATCTAA
2364268 G
1 G
2364269 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAGATCTAA
Found at i:2370850 original size:872 final size:880
Alignment explanation
Indices: 2365946--2371075 Score: 4969
Period size: 872 Copynumber: 5.8 Consensus size: 880
2365936 CCCGCCCGCC
* * * * * * *
2365946 CGCTCGTTTTGTCGGTTGGCTTAGGCATACAAAGTTAATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
* * * * *
2366011 TCCTAGTGTAAGATC-AGATCAG-ACCAGGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGC
66 TCCCAGTGTAAGATCGA-ACCGGAACGA-GGGTTG-CGGTGCACATGCTGGGCTCGGGCATGTGC
* * * * *
2366074 TGGTACCGCA----TTTTCATCTGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGACG
128 TGGTGCCACATTTTTTTTCACCCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACG
* * * *
2366135 GCATTGAGGTTCTGGCGATT-GGGG--GGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
193 GCATTGGGGTTCCGACGATTGGGGGACGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *** *
2366197 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATGACAAGAACTCACACCCCCTTAAAGA
258 TACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
2366262 ACATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTCTTT
323 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
2366327 TCAAATGGTCACTAAATCCTTGTACACTTCGAG-TTTTAGATGAATTGTTTTGTGCATGCCAACA
388 TCAAATGGTCACAAAATCC-TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACA
* *
2366391 AAAATACAA-GATCACGTCTACCAAGTTTGGGGCCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
452 AAAATACAAGGATCACGTCTACCAAGTCTGGGG-CCAAAACTCCTTCTAAAAAAATTTTAAAAAA
* * * * *
2366455 TTCT-AAAGCCGGT-AAAAGTTTCAAAAATCATTG-AAAATAGACAAAGGAATCGTCTTGCCATG
516 ATCTCAAA-CC-GTAAAAAGTTTTAAAAATC-GTGAAAAATAGA-AAACGAGTCGTCTTGCCATG
* *
2366517 AAACTTCACATGAAGGCTT-AGGGACCATTATTATGACATTCACAAGCCCATTAAAAATGGCCAT
577 AAACTTCACATGAAGGCTTAAGGGACCATT-GTATGA-ATTTACAAG-CCA-TAAAAATGG-CAT
* * **
2366581 TGGGCATGGCCCAAAAATATGAAGGATTGCTGCCCTAAACGCAACCAACTACCACCCTATTGATC
637 T-GGCAT-G--CAGAAATATGAA-GA-TG-TG-CCTAAA--C--CCACCTACCACCCTAACGATC
* * * * ** * * *
2366646 CACGGCTTACCGCATCCCTCCTCTCTTGGCCGGCGTAGTGCACCGCCCAACAGCTCGTTTCGT-T
690 CACGGCTT-GCGCATCCCGCCACTC-TGGCCGACGTAGTGC-CCGCCCGTCCGCTCGTTTCATCA
* * * *
2366710 GTTGGCTTTAGGCATGAGCGGAGTTTCATTTCCTAGGTCTAAGATTGAACCAAATCCAAGTGTTA
752 GTTCGC-TTAGGCAT-A-CAGAG-TTCA-TTCCCA-GTCTAAGATT--A-C-AA--CGAGTG---
* * * * ** * * ***
2366775 CAATAGCAGGATCGGCAGCCACGCAGGGGGGGACTCGGTCGATACCCTGCTTATACATCCTGCCC
802 C-A-AGCAGGA----CA-CTACAC-GTGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCC
* * * *
2366840 CTCTAGCCGACTGAGTGCCCCGGCA
859 CTCTGGCTG-CTGAGCG-CTC-GCA
* * * *
2366865 CGCTCGGTTCGTGGGTTGACTTCAGGAAT-TCGCGAGTTCATTCCCAGTCTAAGCAGTACGGAGG
1 CGCTCGTTTCGTGGGTTGACTT-AGGCATAT--AGAGTTCATTCCTAGTCTAAGCA-TACGGA-G
* ** * * * * *
2366929 TTCATTTCCCAGTTATAAGAT-GAATTGG-ACCA-GGTATGTGGGTGCAAGATGCTAGGC-CCGG
61 TTCA-TTCCCAG-TGTAAGATCGAACCGGAACGAGGGT-TG-CGGTGC-ACATGCTGGGCTCGGG
* ** * ** *
2366990 CAT-TGCTGGTGCCGCATATTTTTTTTGCCC-AGGCACCAT-TGCGTGAGCATCCACCCGAAGAA
121 CATGTGCTGGTGCCACAT-TTTTTTTCACCCGGGGCACCATCACCG-GAGCAT-CA-CCGGAGAA
* * * * * ** *
2367052 CCTAACCGGCGACA-T-CGGTTTCGTTGATT---GG-C----GGGGTGTGCGCACATAATGTAGC
182 CCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGACGGAGGGGGTGTGCGCACATGATGT-GC
* * *
2367107 GA-GGGTGCT-GTACTT-GCCCTTATATTGG-CCCATATCCCTCATCAGAACCTCGAGAAATCA-
246 GATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCA-AACCTCGAGAACTCAC
*
2367167 ACCCCCTT-AAG-GCA-TTG-GA--TTACA-GTTTGCTGCCA-TAGCCCA-TAAAATGTCTGATA
310 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGA-A
* * * *
2367223 AT-GGGATACTTTTTTCAAATGGGCGCAAAATCATGTACACTTCGAGTTTTTAGCGTGAATTTTT
373 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC-TGAATTTTT
* * *
2367287 TTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAG-CTTGGGGCCAAAACTCCTTCTGA
437 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTC-TGGGGCCAAAACTCCTTCTAA
* ** * *
2367351 AAAAATTTAAAAAAAATCTTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
501 AAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
2367416 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
566 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
2367481 GGGCATTGGCATGGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCTTATCGATCCACGG
631 TGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGG
* * * * * * * *
2367546 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTCCCGCCGGCCCGCTCGTTTCATCGGTTGGCTT
695 CTTGCGCATCCCGCCACTCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCATCAGTTCGCTT
** * * * * * **
2367611 AGGCATAGGGAGTTCATTCCCAGTTTAAGATCAGATCGAACCAAGGGTTACAGCAGTAGGATCGG
760 AGGCATACAGAGTTCATTCCCAGTCTAAGAT--TA-C-AA-C--GAG-TGCA--AGCAGGA-CAC
* * * * * ** *
2367676 TAGCACGCAGAGGGGACCCGGCCAATCCTCGGCTTGTGCATCCTGCCTTTCTGGCCGACTGAGCG
814 TA-CACG-TG-GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTG-CTGAGCG
*
2367741 CCCGCA
875 CTCGCA
* * * * ** *
2367747 CGTTCGTTTCATGAGTTGACTTAGGCATA-CGAAGTTCATTCC-AGTCTAATTATATGGAGTTCA
1 CGCTCGTTTCGTGGGTTGACTTAGGCATATAG-AGTTCATTCCTAGTCTAAGCATACGGAGTTCA
* * * *
2367810 TTCCCAGTGTAAGATC-AGACCAGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGT
65 TTCCCAGTGTAAGATCGA-ACCGGAACGAGGGTTGC-GGTGCACATGCTGGGCTCGGGCATGTGC
* * * * * * * *
2367874 TGGTCCCATATTTTTTTTCGCTCGGGGCACCATCGCCAGAGCATCGCCAGAGAACCTGACC--CG
128 TGGTGCCACATTTTTTTTCACCCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACG
* * ***** * * * *
2367937 GC----GGG---C-A--ATTTGGTGTTTTTGGTGATTTG-G-----G--GGGCTGA-GGG-G-T-
193 GCATTGGGGTTCCGACGATTGGGGGACGGAGGGGGTGTGCGCACATGATGTGC-GATGGGTGCTG
* * * * *
2367980 -TGC-TGGCCCTTATATTGGCCACCCTATCCTTCATTCAAACCCTCAAAGAACTCACACCCTCTT
257 GTACTTGGCCCTTATGTTGGCC-CCCTATCCCTCA-TCAAA-CCTC-GAGAACTCACACCCCCTT
*
2368043 AAAGAGCATTTTGAGATTTTACAGGTTTTGCTGCCACGCCAGCCATTAAAGTGTCTGACAATGGG
318 AAAGAGCA-TTTGAGATTTTACAGG-TTTGCTGCCA-G-TAGCCATTAAAGTGTCTGA-AATGGG
2368108 GACACTTTTTTCAAATGGTCACCAAAATCCTTTGTACACTTC-ATGTTTTTAGCTGAATTTTTAT
378 GACACTTTTTTCAAATGGTCA-CAAAATCC--TGTACACTTCGA-GTTTTTAGCTGAATTTTT-T
* * * * * * * * *
2368172 TGTACGTGCCAACCAAAATTAC-AGGATCACCTCTACCATGTTTGGGGCCAAAACTCCTACTGAA
438 TATGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTCCTTCTAAA
* * * * *
2368236 AAAATTTTAAAAAAATCCCGACCCGTAAAAAGTTTTAAAAATCGTGAAAAATGGAAAATGAGTCG
502 AAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
2368301 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
567 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** *
2368366 GGCATTGGCATGGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGAC
632 GGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGC
* * * * * * * *
2368431 TTGCGCATCTCGCCTCTCTGGCCGGCGTAGT----GCCCGTCCGTTCATTTCGTCGGTTGGCTTA
696 TTGCGCATCCCGCCACTCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCATCAGTTCGCTTA
* * * **
2368492 GGCATACGGTGTTCATTCCCAGTCTAAGATTGAACCGAACTGATGGTTGTGGC-AGTAGGATCGG
761 GGCATACAGAGTTCATTCCCAGTCTAAGATT--A-C-AAC-GA-----GT-GCAAGCAGGA-CAC
** * *
2368556 TAGCACACAGGGGTAGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCTGCTGAGC
814 TA-CAC-GTGGGG--GACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG-CTGCTGAGC
*
2368621 GCTTGCA
874 GCTCGCA
* * * * *
2368628 CGCTCATTTCATTGGTTGACTTAGGCATATAGAGTTAATTCCTAGTCTAAGCATACGGACTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
* * * * * *
2368693 TACCAGTGTAAGATC-AGATC-GAATCAAGGGTTGTGGGTGCAGATGCTGGGCTCGGACATGTGC
66 TCCCAGTGTAAGATCGA-ACCGGAA-CGAGGGTTG-CGGTGCACATGCTGGGCTCGGGCATGTGC
* * * *
2368756 TGGTGCCACA----TTTTCATCCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGTCCGACG
128 TGGTGCCACATTTTTTTTCACCCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACG
* * *
2368817 GCATTGGGGTTCCGATGATTGAGGGGGC-G-GGGGG-GTGCGCACATGATGTGCGATGGGTGTTG
193 GCATTGGGGTTCCGACGATTG-GGGGACGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
** * * *
2368879 GTACTTGGCCCTTATGTTTACCCCCTATCCCTCATGAAA-CTTGAGAACTGACACCCCCTTAAAG
257 GTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
2368943 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTT
322 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
2369008 TTCAAATGGTCACAAAATCCTGTACAC-TCTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
387 TTCAAATGGTCACAAAATCCTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
* *
2369072 AAAAATACAAGGATCACGTCTACCAAGTCTGGGGCTAAAACTCCTTCTGAAAAAAATTTAAAAAA
451 AAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTCCTTCT-AAAAAAATTT-TAAAA
* *
2369137 AAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
514 AAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
2369202 ACTTCACATGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCACTGGTATA
579 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-
* * * *
2369267 G-AAATAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC
643 GCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGCATCCC
* * * ** *
2369331 GGCTCTCTGGCCGATGTAGTGCCCGCCCGTCCGCTCGTTTTGTCAGTTCGCTTAGGCATACGGAG
707 GCCACTCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCATCAGTTCGCTTAGGCATACAGAG
* *
2369396 TTCATTCCCAGTCTAAGATTGAACTAGACTGAGGGTTGCAGTAGTAGGATCAGTAGCACGTAGGG
772 TTCATTCCCAGTCTAAGATT--AC-A-AC-GA--G-TGCA--AGCAGGA-CACTA-CACGT--GG
* * * * *
2369461 GGGACCCGACCGATCCCCGGTTTGTGCATCTTGCCCCTCTAGTTGGCTGAGCGCTCGCA
823 GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCT-GCTGAGCGCTCGCA
* ** * *
2369520 CGCTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCTAGTCTAAGCGTACGGAGTTTAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
* * * * * * *
2369585 TCCCAGTGTAAGATTGGACTGGAAAGAGGGTTGCAGGTGCACATGCTGCGCTCTGGCAAGTGCTG
66 TCCCAGTGTAAGATCGAACCGGAACGAGGGTTGC-GGTGCACATGCTGGGCTCGGGCATGTGCTG
** *
2369650 GTGCTGCATTTTTTTTCACTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGC
130 GTGCCACATTTTTTTTCACCCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGC
* * * *
2369715 GTTAGGATTCCGACGATTGGGGGACGGAGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGT
195 ATTGGGGTTCCGACGATTGGGGGACGGA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
2369780 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
259 ACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
2369845 CATTTGAGATTTTATAGGTTTGCTGCTAATAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
2369910 CAAATGGTCACTAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATTCCAAAAAA
389 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAA
* * *
2369975 AATACAAGGATCATC-TCTACCAAGTTTGGGGCCAAAAATCATTCTAAAAAAATTTTAAAAAAAT
454 AATACAAGGATCA-CGTCTACCAAGTCTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAAT
* **
2370039 CTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
518 CTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
2370104 CACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGGCAG
583 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GCAG
*
2370169 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGTATCCCGCCAC
647 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGCATCCCGCCAC
* * *
2370234 TCTGGCCGACGTAGTGCCCGCCCG-CCTGCTCGTTTCATCGGTTGGCTTAGGCATACATAGTTCA
712 TCTGGCCGACGTAGTGCCCGCCCGTCC-GCTCGTTTCATCAGTTCGCTTAGGCATACAGAGTTCA
**
2370298 TTCCCAGTCTAAGA-T-C-A-GA-T-C-AGCA-G-CACT-CA-GT-GGGGACCC-AGTTGATCCC
776 TTCCCAGTCTAAGATTACAACGAGTGCAAGCAGGACACTACACGTGGGGGACCCGA-CCGATCCC
* * *
2370350 CGGCTTGCGCATCCTACCCCTCTGGCCTGCTGAGCACCCGCA
840 CGGCTTGCGCATCCTGCCCCTCTGG-CTGCTGAGCGCTCGCA
* * * *
2370392 CACTCGTTTCGTGGGTTGACTTAGGCATATAAAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
* *
2370457 TCCCAGTGTAAGATCGAACCGGACCGAGGGTTGCGGTTGTACATGCTGGGCTCGGGCATGTGCTG
66 TCCCAGTGTAAGATCGAACCGGAACGAGGGTTGCGG-TGCACATGCTGGGCTCGGGCATGTGCTG
** *
2370522 GTGCCACATTTTTTTTCACCCGGGGCACCATCACCGGAGCATTGCCAGAGAACCTGACCGACGGC
130 GTGCCACATTTTTTTTCACCCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGC
*
2370587 ATTGGGGTTCCAACGATTGGGGCGACGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
195 ATTGGGGTTCCGACGATTGGGG-GACGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
2370652 ACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
259 ACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
2370717 CATTTGAGATTTTGCAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
2370782 CAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTAGCTGAATTGTTTTCTGCATGCCAACAAA
389 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAA
* * * *
2370847 AATAAAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCCTCTAAAAAAATTTTTAAAAAATC
454 AATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATC
** * * *
2370912 TCAAATGGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
519 TCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
2370977 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGCAGA
584 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGA
2371042 AATATGAAGATGTGCCTAAACCCACCTACCACCC
648 AATATGAAGATGTGCCTAAACCCACCTACCACCC
2371076 AGTGTAAGAT
Statistics
Matches: 3573, Mismatches: 466, Indels: 391
0.81 0.11 0.09
Matches are distributed among these distances:
862 1 0.00
863 15 0.00
864 2 0.00
865 15 0.00
866 16 0.00
867 7 0.00
868 7 0.00
869 5 0.00
870 3 0.00
871 4 0.00
872 662 0.19
873 11 0.00
874 8 0.00
875 15 0.00
876 33 0.01
877 40 0.01
878 75 0.02
879 18 0.01
880 107 0.03
881 107 0.03
882 110 0.03
883 19 0.01
884 323 0.09
885 9 0.00
886 17 0.00
887 59 0.02
888 44 0.01
889 209 0.06
890 18 0.01
891 34 0.01
892 197 0.06
893 103 0.03
894 29 0.01
895 49 0.01
896 93 0.03
897 7 0.00
898 257 0.07
899 82 0.02
900 197 0.06
901 19 0.01
902 2 0.00
903 11 0.00
905 7 0.00
906 4 0.00
907 8 0.00
908 3 0.00
909 21 0.01
910 90 0.03
911 115 0.03
912 28 0.01
914 2 0.00
915 3 0.00
916 2 0.00
917 3 0.00
918 23 0.01
919 41 0.01
920 11 0.00
921 46 0.01
922 25 0.01
923 20 0.01
924 24 0.01
925 9 0.00
926 23 0.01
927 8 0.00
928 18 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (880 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
TCCCAGTGTAAGATCGAACCGGAACGAGGGTTGCGGTGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCACATTTTTTTTCACCCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATTGGGGGACGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCTC
AAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGCATCCCGCCACTCTG
GCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCATCAGTTCGCTTAGGCATACAGAGTTCATTCCC
AGTCTAAGATTACAACGAGTGCAAGCAGGACACTACACGTGGGGGACCCGACCGATCCCCGGCTT
GCGCATCCTGCCCCTCTGGCTGCTGAGCGCTCGCA
Found at i:2371639 original size:581 final size:581
Alignment explanation
Indices: 2370530--2371656 Score: 1681
Period size: 581 Copynumber: 1.9 Consensus size: 581
2370520 TGGTGCCACA
* * * *
2370530 TTTTTTTTCACCCGGGGCACCATCACCGGAGCATTGCCAGAGAACCTGACCGACGGCATTGGGGT
1 TTTTTTTTCACCCGGGGCACCATCACCGAAGCATCGCCAGAAAACCTGACCAACGGCATTGGGGT
* *
2370595 TCCAACGATTGGGGCGACGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
66 TCCAACGATTGGGGCGACGGAGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACATGGCC
*
2370660 CTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
131 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
2370725 ATTTTGCAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGT
196 ATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGCGGACACTTTTTTCAAATGGT
* *
2370790 CACAAAATCGTGTACACTTCGAGTTTTTAGCTGAATTGTTTTCTGCATGCCAACAAAAATAAAAG
261 CACAAAATCGTCTACACTTCAAGTTTTTAGCTGAATTGTTTTCTGCATGCCAACAAAAATAAAAG
* * * ***
2370855 GATCACGTCTACCAAGTGTGGGGCCAAAACTCCCTCTAAAAAAATTTTTAAAAAATCTCAAATGG
326 GATCACGTCTACCAAGTGTGGGGCCAAAAATCCCACTAAAAAAATTTTTAAAAAATCCCAAACCA
* * *
2370920 TAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAG
391 TAAAAAGTTTAGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACATAAAG
*
2370985 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGCAGAAATATGAA
456 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGCAAAAATATGAA
2371050 GATGTGCCTAAACCCACCTACCACCCAGTGTAAGATCAACCCAGACCGAGGCTTGCCGTAT
521 GATGTGCCTAAACCCACCTACCACCCAGTGTAAGATCAACCCAGACCGAGGCTTGCCGTAT
* * *
2371111 TTTTTTTTCTCCCGGGGCACCATCGCCGAAGCATCGCC-GAAAAACTTGACCAACGGCATTGGGG
1 TTTTTTTTCACCCGGGGCACCATCACCGAAGCATCGCCAG-AAAACCTGACCAACGGCATTGGGG
** * * * *
2371175 TTCCGGCGATTGAGGGTCGGACGG-GGTGGTGTGGGCACATGATGTGCGTTGGCTGCTGGTTCAT
65 TTCCAACGATTG-GGG-C-GACGGAGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACAT
* ** *
2371239 GGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACATGCTCTTAAAGAGCATT
127 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
2371303 TGAGATTTTATAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
192 TGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGCGGACACTTTTTTCAAA
* * *
2371368 TGGTCACAAAATCTTCTATACTTCAAGTTTTTAGCTGTAATT-TTTTGTGCATGCCAACAAAAAT
257 TGGTCACAAAATCGTCTACACTTCAAGTTTTTAGCTG-AATTGTTTTCTGCATGCCAACAAAAAT
** * * ** * *
2371432 ACGAGGATCACGTCTACCAAGTTTGGGGTCAAAAATCTGACTGAAAAAA-TTTTAAAAAATCCCG
321 AAAAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCCCACTAAAAAAATTTTTAAAAAATCCCA
* *
2371496 AGCCATAAAAAGTTTAGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACA
386 AACCATAAAAAGTTTAGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACA
**
2371561 TAAAGGCTTAAGGGACCATTGTATGAATTTATGAGCCATAAAAATGGCATTGGCAC-GACAAAAA
451 TAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTG-CAAAAA
2371625 TATGAAGATGTGCCTAAACCCACCTACCACCC
515 TATGAAGATGTGCCTAAACCCACCTACCACCC
2371657 TATCGATCCA
Statistics
Matches: 487, Mismatches: 53, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
580 2 0.00
581 226 0.46
582 204 0.42
583 50 0.10
584 5 0.01
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (581 bp):
TTTTTTTTCACCCGGGGCACCATCACCGAAGCATCGCCAGAAAACCTGACCAACGGCATTGGGGT
TCCAACGATTGGGGCGACGGAGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACATGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGCGGACACTTTTTTCAAATGGT
CACAAAATCGTCTACACTTCAAGTTTTTAGCTGAATTGTTTTCTGCATGCCAACAAAAATAAAAG
GATCACGTCTACCAAGTGTGGGGCCAAAAATCCCACTAAAAAAATTTTTAAAAAATCCCAAACCA
TAAAAAGTTTAGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACATAAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGCAAAAATATGAA
GATGTGCCTAAACCCACCTACCACCCAGTGTAAGATCAACCCAGACCGAGGCTTGCCGTAT
Found at i:2374158 original size:334 final size:334
Alignment explanation
Indices: 2373549--2374215 Score: 1262
Period size: 334 Copynumber: 2.0 Consensus size: 334
2373539 TGCCATAAGT
*
2373549 CCTCTACTGGTTCCCAGATTGCCTCACTATCTAAAAGTCCCTTCTAGCGTACCAAGTACTCATGT
1 CCTCTACTGGTTCCCAGATTGCCTCACTATCTAAAAGTCCCTTCTAGCATACCAAGTACTCATGT
*
2373614 CTTGGTTTTTAGTTCTTCTGTCTCACCTCTCGATCAGCTATGATGTTGTGGACCTCCTTTTCATA
66 CTTGGTTTTTAGTTCTTCTGTCTCACCTCTCGATCAGCTATGATGCTGTGGACCTCCTTTTCATA
2373679 TGAGGCCCTTACTCCCAATGGCGCACGCTTTGACTCTACCCATCCTGGATCTCCCTCATCCTCAT
131 TGAGGCCCTTACTCCCAATGGCGCACGCTTTGACTCTACCCATCCTGGATCTCCCTCATCCTCAT
2373744 GGAACAGCTTGAGCATGCTCACATGGAACACCGGGTGTACCCTCAGCTTGGGTGGCATATCCAGC
196 GGAACAGCTTGAGCATGCTCACATGGAACACCGGGTGTACCCTCAGCTTGGGTGGCATATCCAGC
*
2373809 TTGTAGGCAACCTTGCCTACCCTCTTGACTATTTCGAAAGGTCCCTCATACCTCCGGACTAGGCC
261 TTGTAAGCAACCTTGCCTACCCTCTTGACTATTTCGAAAGGTCCCTCATACCTCCGGACTAGGCC
2373874 TTTGTGCAA
326 TTTGTGCAA
*
2373883 CCTCTACTGGTTCCCAGCTTGCCTCACTATCTAAAAGTCCCTTCTAGCATACCAAGTACTCATGT
1 CCTCTACTGGTTCCCAGATTGCCTCACTATCTAAAAGTCCCTTCTAGCATACCAAGTACTCATGT
2373948 CTTGGTTTTTAGTTCTTCTGTCTCACCTCTCGATCAGCTATGATGCTGTGGACCTCCTTTTCATA
66 CTTGGTTTTTAGTTCTTCTGTCTCACCTCTCGATCAGCTATGATGCTGTGGACCTCCTTTTCATA
* *
2374013 TGAGGCCCTTACTCCCAATGGTGCACGCTTTGACTCTACCCATCCTGGATCTCTCTCATCCTCAT
131 TGAGGCCCTTACTCCCAATGGCGCACGCTTTGACTCTACCCATCCTGGATCTCCCTCATCCTCAT
* *
2374078 GGAATAGCTTGAGCATGCTCACATGGAACATCGGGTGTACCCTCAGCTTGGGTGGCATATCCAGC
196 GGAACAGCTTGAGCATGCTCACATGGAACACCGGGTGTACCCTCAGCTTGGGTGGCATATCCAGC
2374143 TTGTAAGCAACCTTGCCTACCCTCTTGACTATTTCGAAAGGTCCCTCATACCTCCGGACTAGGCC
261 TTGTAAGCAACCTTGCCTACCCTCTTGACTATTTCGAAAGGTCCCTCATACCTCCGGACTAGGCC
2374208 TTTGTGCA
326 TTTGTGCA
2374216 GCCCCCTGTG
Statistics
Matches: 325, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
334 325 1.00
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.31
Consensus pattern (334 bp):
CCTCTACTGGTTCCCAGATTGCCTCACTATCTAAAAGTCCCTTCTAGCATACCAAGTACTCATGT
CTTGGTTTTTAGTTCTTCTGTCTCACCTCTCGATCAGCTATGATGCTGTGGACCTCCTTTTCATA
TGAGGCCCTTACTCCCAATGGCGCACGCTTTGACTCTACCCATCCTGGATCTCCCTCATCCTCAT
GGAACAGCTTGAGCATGCTCACATGGAACACCGGGTGTACCCTCAGCTTGGGTGGCATATCCAGC
TTGTAAGCAACCTTGCCTACCCTCTTGACTATTTCGAAAGGTCCCTCATACCTCCGGACTAGGCC
TTTGTGCAA
Found at i:2381581 original size:26 final size:26
Alignment explanation
Indices: 2381552--2381604 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2381542 CTAGTCTGAT
* * *
2381552 CTTACACTGGTAATGAACTCTATATG
1 CTTACACTGGGAATGAACACCATATG
*
2381578 CTTAGACTGGGAATGAACACCATATG
1 CTTACACTGGGAATGAACACCATATG
2381604 C
1 C
2381605 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACACCATATG
Found at i:2382481 original size:26 final size:26
Alignment explanation
Indices: 2382444--2382496 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2382434 CCGGTCCGAT
2382444 CTTACATCGGGAATGAACTCCATATG
1 CTTACATCGGGAATGAACTCCATATG
*
2382470 CTTACA-CTGGGAATGAACTCCGTATG
1 CTTACATC-GGGAATGAACTCCATATG
2382496 C
1 C
2382497 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACATCGGGAATGAACTCCATATG
Found at i:2384249 original size:26 final size:26
Alignment explanation
Indices: 2384213--2384265 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2384203 CCAGTTTGAT
*
2384213 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
* *
2384239 CTTAGACTGGGAATAAACTCTGTATG
1 CTTACACTGGGAATAAACTCCGTATG
2384265 C
1 C
2384266 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:2385090 original size:25 final size:26
Alignment explanation
Indices: 2385062--2385113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2385052 CCGGTCTGAT
2385062 CTTACACT-GGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
2385087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2385113 C
1 C
2385114 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2385822 original size:26 final size:26
Alignment explanation
Indices: 2385771--2385823 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2385761 CCGGTCTGAT
* *
2385771 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
2385797 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
2385823 C
1 C
2385824 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:2393256 original size:26 final size:26
Alignment explanation
Indices: 2393220--2393272 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2393210 CTGGTCCAAT
2393220 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
2393246 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2393272 C
1 C
2393273 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2395032 original size:26 final size:26
Alignment explanation
Indices: 2394980--2395032 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2394970 CTGGTCTGAT
* *
2394980 CTTACACTGGGAATGAACTCTGAATG
1 CTTACACTGGGAATCAACTCCGAATG
* *
2395006 CTTAGACTGGGAATCAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGAATG
2395032 C
1 C
2395033 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCGAATG
Found at i:2397700 original size:26 final size:26
Alignment explanation
Indices: 2397671--2397723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2397661 CCGGTCCGAT
2397671 CTTACAATGGGAATGAACTCCGTATG
1 CTTACAATGGGAATGAACTCCGTATG
* *
2397697 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACAATGGGAATGAACTCCGTATG
2397723 C
1 C
2397724 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACAATGGGAATGAACTCCGTATG
Found at i:2398087 original size:894 final size:895
Alignment explanation
Indices: 2392467--2412032 Score: 16277
Period size: 896 Copynumber: 22.0 Consensus size: 895
2392457 TTGTGACACA
* * * * * * * *
2392467 TGCGTGCTATCGATCTTGCTGTCGTAACCCTCAGT-TCAGTCTGATCTTAGTCTGGAAATGAACT
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACT
* * * * *
2392531 -CGTATGCCTAAACCAA-TCGACGAAAGGAGCGGGCGGGCAGGCACTACGCCGACCAGAGAGGTG
65 CCGTATGCCTAAGCCAACT-GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
* * * *
2392594 GGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTTTTCCA
129 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
2392659 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCATGTGAAGTTT
194 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
2392724 CATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCGAGATTTTT
259 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * *
2392789 TTAAACTTTTTTCAGAAGGAGTTTTGGTCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTG
324 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
*
2392854 GCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
389 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
*
2392919 TGTCCCCATTTCAGAGACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTGT
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-T
* *
2392983 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGC
518 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
2393048 ACCCATCACACATCATGTGCGCACACCCCCCG-CCCCCAATCG-CCAGAACCCCAATGCCGCCGG
583 ACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGA-AACCCCAATGCCGTCGG
* * * * *
2393111 TCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCTCGGGCG-AAAAAAATGTGGCACCAGCACAT
647 TCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACAT
* * *
2393175 GCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTC
712 GCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTC
*
2393240 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
777 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
2393305 CTCAGCCGGCCAGAGGGGCAGGATGTGTAAGCC-GGG-T----C----CACCCC
842 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCC
* * * * * *
2393349 TGCATGCTGCCGATCTTGCTACCGCAACCCTTGG-CTTGGTCTAATCTTAGACTGGGAATGAACT
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTC-TGGTCTGATCTTAGACTGGGAATGAACT
* * ** * * *
2393413 CCGTATGGCTAAGCCAACCGATAAAATGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGA
65 CCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* * * * *
2393478 GATGTGCAAGTCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATC-CCGATATTTCTACCA
130 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC-ATATTTCTGCCA
* * *
2393542 TGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGTCCCCTAAGCCTTCATTTGAAGTTT
194 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * *
2393607 CATGGCAAGACGACTCATTTTCTATTTTTCAAGATTTTTGAAAATTTTTACGGTTCGAGATTTTT
259 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * *
2393672 TTAAAATTTTTTGAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
324 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* **
2393737 GCATGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTCCAAAAAAG
389 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* * *
2393802 TTTCCCTATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * **
2393867 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGTACCAATATAAGGGCCAAGTACCAGCA
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * ** *
2393932 CCCATCGCACATCATGTGCGCACACCCCCCCGTCCGCCCAATTGTCGGAACCCCAAAGGTGCCGG
584 CCCATCGCACATCATGTGCGCACA-CCCCCCG-CCCCCCAATCGTCGAAACCCCAATGCCGTCGG
** * * * * *
2393997 TCAGGTTCTCTAGCGATGCTCCGGCGCTGGTGCCCCAGGCAAAAAAAAAATACGGCACCAGCACA
647 TCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGC-GAAAAAAAATGCGGCACCAGCACA
* *
2394062 TGCCCGAGCCCAGCATATGCACCCACAA--CTC--T-C--T--G----T-C-C---G---G---T
711 TGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACT
* * *
2394103 CCG-AT-CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGC
776 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* *
2394166 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCTGGGTACCCCCC
841 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGT-CCCCCC
* * * * * * ** ** *
2394222 TGCATGCTGCCCATCTTGCTGCTGCAACCCTCGGT-TCGATCCAATCTTAGACAAGGAATAAACT
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACT
* * * * * *
2394286 CCGTATGCCCAAGCCAACTGACAAAACGAGCGGACGGGCAGGTACTACGTCGGCCAGAGAGGCGG
65 CCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
*
2394351 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCCAT
130 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
2394416 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
195 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* ** * * * *
2394481 ATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTATGGTTTGGAAATTTTT
260 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * * ** * *
2394546 TAAAATTTTTTCAGATGGTGTTTTAGCCTGAAACTTGGCAGACAAGATCCTTGTATATTTT-TTG
325 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT-TTTTGTTG
*
2394610 GCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
389 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* * *
2394675 TGTCCCCATTTTAGCCACTTTAATGGCTACTGGCAGCAAACCTGTAAAGTCTCAAATGCTCTTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
2394740 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * ** * *
2394805 CCCATCGCACATTAGGTGCGCACAATCCCCCTGCCCCCCAATCATCGGAATGCTAATGCCGCCGG
584 CCCATCGCACATCATGTGCGCAC-A-CCCCCCGCCCCCCAATCGTCGAAACCCCAATGCCGTCGG
* * * * *
2394870 TCAGGTTCTCCAGCGATGCTCTGACGATAGTGCCCCGGGGGAAAAAAAATGTGGCACCAGCACAT
647 TCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACAT
* * * *
2394935 GTCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTC
712 GCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTC
* * * * *
2395000 TGAATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCG
777 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
2395065 CTCAGCCGGCCATAGGGGCAGGATGCGCAAGCCAGGGATC-AGTCGGGTCCCCCC
842 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCC
* * * * * * **
2395119 TGTGTGCTACGGATCCTACTGCTGCAACCCTCAGTCAGGTCCT-ATCTTAGACTAAGAATGAACT
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACT
* * * * * * * *
2395183 CCGTATGCCTAAGCCTATTGACAAAACAAGTGGGCGGGTGGGCACT-TGCCAGCCAGAGAGGCGG
65 CCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
*
2395247 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCCAT
130 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
2395312 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
195 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* *
2395377 ATGCCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
260 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * *
2395442 TAAATTTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGG
325 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
** * * * * *
2395507 TGTGCATAAAAACATTCAGCGAAAAACTCGAAGTGTACAGGATTTTGTGAGCATTTGAAAAAGGT
390 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
* *
2395572 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCCAATGCTCTTT-A
455 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
2395636 TGGGGTGTGAGTTCTTGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
520 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
2395701 CCATCGCACATCATGTGCGCACAGCCCCCCGTGCCCCCCCAATCGCCGGAACCCCAATGCCGTCG
585 CCATCGCACATCATGTGCGCACA-CCCCCC--G-CCCCCCAATCGTCGAAACCCCAATGCCGTCG
** * * *
2395766 GTCAGGTTCTCCGATGATGCTCTGGCAATGGTGGCCCGGGCGTAAAAAAATGCGGCACCAGCACA
646 GTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACA
* * * * * *
2395831 TGCCCAAGCCCAGCATGTGCACCTGCAACCCTCAGTCCGGTTCTATCTTACAATGGGAATGAACT
711 TGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACT
* * *
2395896 CCCTATGCTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
776 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * *
2395961 ACTCAGCCAGCCGGAGGGGCA-GATGCGTAAGTCGGGGATCGACCGGGTCCCCCC
841 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCC
* * ** ** ** * *
2396015 TACATGCTGTCGATCCTG-TGCTACAGTCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACAC
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * *
2396079 CTTATGCCTAAGCCAACTGACGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAAAGAGGCGAG
66 CGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* * *
2396144 ATGCGCACGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTGATATTTCTGCCATG
131 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
*
2396209 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCATGTGAAGTTTCA
196 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
**
2396274 TGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
261 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-
* * * *
2396339 AAAAATTTTTT-ATAAGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTCTGTTGG
325 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
** *
2396403 CATGCACAAAAAAATTCAGCTGAAAAA-TCTTAGTGTACAGGATTTTGTGACCATTTCAAAAAAG
390 CATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
*
2396467 TGTCCCCATTTCAGAGACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
2396532 A-AGGGTGTGTGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
2396596 CGCATTGCACATCATGTGTGCACACCCTCTCCCCCGCCCCCCCAATCATCGAAACCCCAATGCTG
584 CCCATCGCACATCATGTGCGCACA----C-CCCCCG-CCCCCCAATCGTCGAAACCCCAATGCCG
* * * * * * * ** *
2396661 CCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTCGAGCAAAAAGAAAATGCAACACTAG
643 TCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAA-AAAATGCGGCACCAG
* * ** * *
2396726 CACATGCCCGAGCCCAGCATGAGCACCCACAACCCTCAATTCGGTCCGATCTTACACTGGGAATA
707 CACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATG
* * * * * **
2396791 AACTCCGCATGCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGTGCAC
772 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * *
2396856 GGGCGCTCAACCAGCCAGAGGGGCAGGATGCCCAAGCCGAGGATCGACCCGGTCCCCCCC
837 GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGT-CCCCCC
** * * ** * * **
2396916 TATGTGCTGCTGATCCTAATGCCGTAACCCTCGATCTGGTCTGATCTTAGACTATGAATGAACTC
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * **
2396981 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCACTACATCGGCCAGAGAGGCGGG
66 CGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* *
2397046 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATC
131 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
2397111 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
196 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * * * *
2397176 TGGCAAGACGGCTCGTTTTCTATTTTTCACGATTTTTAAAACGTTTTACGGTTTGGGATTTTTTA
261 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT
* *
2397241 AAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGACATGAT-CTTGTATTTTTGTTGGC
326 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
* * *
2397305 ATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAGGATTTTGTGACCATTAGAAAAAGGTG
391 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
* * *
2397370 TCCCCATTTTAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATG
456 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
2397435 GGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
521 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
2397500 CATTGCACATCATGTGCGCACACCCCCCGCCCCCCAATCATCGAAACCCTAATGTCGTCGGTCAG
586 CATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGAAACCCCAATGCCGTCGGTCAG
* * *
2397565 GTTCTCCGGTGATGCTCTGGCGATGGTGCCCCGGGTGAAAAAAAATGCAGCACCAGCACATGCCC
651 GTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCC
* * * *
2397630 AAGCCCAGCATGTCCACCTGCAACCCTCGGTCCGGTCCGATCTTACAATGGGAATGAACTCCGTA
716 GAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTA
2397695 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
781 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
2397760 GCCAGCCGGAGGGGCAAGATGCACAAGTCGGGGATCGACCGGGTCTCCCCC
846 GCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTC-CCCCC
* * * * * *
2397811 TGCATGCCACAGATCCTACTGCTGCGACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT-
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * *
2397875 CGTATGCCTAAGCCAACTGACGAAACGGGCAGGCTGGCGGGCACTACGCCGGCTAGAGAGGCGAG
66 CGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* *
2397940 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTTTGCCATG
131 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
2398005 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
196 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * * * **
2398070 TGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTATGATTTAGGATTTTTTT
261 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT
* * *
2398135 AAAATTTTTTTATAAGGCA-TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGG
326 AAAATTTTTTCAGAAGG-AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
* *
2398199 CATGCACAAAAAAATTCAGCTAAAAAATC-ATAGTGTACAGGATTTTGTGACCATTTCAAAAAAG
390 CATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* * * *
2398263 TGTCCCCATTTCACACACTTTAATGGCTACTAGCATCAAACCAGTAAAATCTCAAATGCTCTTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
2398328 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCA
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
** * * * * * * *
2398393 CATATCACACATGATGTGCGCA-ACGCCCCACCCCCCAATCGCCGGAACCCCAATGCCG-CTGGC
584 CCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGAAACCCCAATGCCGTC-GGT
* * * *
2398456 CAGGTTCTCCGGCGGTGCTCCT-GTGATGGTGCCTCGGGCGAAAAAAAATGTGGCACCAGCACAT
648 CAGGTTCTCCGGCGATGCT-CTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACAT
* * * * *
2398520 G-CCGAGCCCAGCATGTGCACCTGCAACCTTTGGTCTGGTCCAATCTTACACT-GGAATGAACTC
712 GCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTC
* * *
2398583 CGTATGCTTAGACTGGGAATGAACTCCGTATACCTAGGTCAACCCACGAAACGAGCGTGC-GGCT
777 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * **
2398647 CTCAGCCGGCCAGTGAGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTTCCCCCC
842 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGG-TCCCCCC
* * * * * ** *
2398702 TG-GATGCTGCCAATCCTACCGCCACAACCCTCCATCTGATCTGATCTTAGACTGGGAATGAACT
1 TGCG-TGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * * * * *
2398766 CCGTATGCCTCAGCCAACCGACGAAATGAGCGGGTGGGCGGGCATTACACCGGCCAGAGGGGCGG
65 CCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* * *
2398831 GATGCAG-AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCT
130 GATGC-GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* * *
2398895 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCATCTGAATTTT
194 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
2398960 CTTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGA-TTTT
259 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * * * **
2399024 TAAAGAATTTTTTCAGTAGGAGTTCTGGCCCCAATCTTCGTAGATGTGATCCTTGTATTTTTGTT
324 TTAA-AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
* * *
2399089 GGCATGCACAAAAAAATTCAGCT-AAAACTCAAAGTGTATAGGATTTTGCGACCATTTGAAAAAA
388 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* * *
2399153 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAGATCTCAAATGCTCTTT
453 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
2399218 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGC
518 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* ** * * *
2399283 ACCCATCGCACATCATGAGCGCACACCACCCTACCCCCCTAATCGTTGGAACCCCAATGCCGCCG
583 ACCCATCGCACATCATGTGCGCACACC-CCCCGCCCCCC-AATCGTCGAAACCCCAATGCCGTCG
* * *
2399348 GCCAGGTTCT----C-A------GGCGATGGTGCCCCGAGCGAAAAAAAAATACGGCACCAGCAC
646 GTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCG-AAAAAAAATGCGGCACCAGCAC
2399402 ATGCCCGAGCCCAGCATGTGCACCCGCAA-CC-C--T----T--GA---T-C-C----AAT---C
710 ATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAAC
* * * *
2399445 T--G-AT-CTTAGA-TAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTACGG
775 TCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * *
2399505 GCGCTCAGTCGGCTAGAGGGGCAGGATGCGCAAGTCGGGGATC-AGTCAGGTCCCCCCC
839 GCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA-CCGGGT-CCCCCC
* * ** *
2399563 TGTC-TGCTGCCGATCCTGCTGCCGTAACCCTCAATTCT-GT-TAGATCCTAGACTGGGAATGAA
1 TG-CGTGCTACCGATCCTGCTGCCGCAACCCTC-GGTCTGGTCT-GATCTTAGACTGGGAATGAA
* * * * **
2399625 CTCCATATGCCTAAGCCAACTAACAAAATGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGGC
63 CTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
* * * * *
2399690 GAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTATAACTTCATATTTCTACC
128 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
* * *
2399755 ATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCTTTAATGTGAAGTT
193 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * **
2399820 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGATTCAAGA-TTT
258 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* **
2399884 TTTAAAATTTTTTCAGAAGGGGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTT
323 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
* * * **
2399949 GGCATGCATAAAAACATTCAGCTAAAAACTTGAAGTGTACAGGAGATTGTGACCATTTGAAAAAA
388 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* *
2400014 GTGTCCCCATTTCAGTCACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
453 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * *
2400079 AAGGGGGTGTGAGTTATCAATGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGC
518 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* *
2400144 ACCCATCGCACATCATGT--GCAC-CCCCCCGCCCGGCCCAATCGTTGAAACCCCAATGTCGTCG
583 ACCCATCGCACATCATGTGCGCACACCCCCCGCCC--CCCAATCGTCGAAACCCCAATGCCGTCG
* * *
2400206 GTCATGTTCT-C--CGA--------CGATGGTGCCCTGGGCGAAAAAAAATGTGGCACCAGCACA
646 GTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACA
* * * * **
2400260 TGCTCGAGCCCAGTACGTGCACCTGCAACCCTCCATCCGGTCCGATCTTACACTGGGAATGAACT
711 TGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACT
* ** *
2400325 CC-TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGC
776 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * **
2400389 GCTCTGTCGGCCAGAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCC
841 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCC
* * * * * * ** * *
2400444 TACGTGCTGCCAATCCTACTGCTGCAACCCACCATCCGGTCTAATCTTAGACTGGGAATGAACTC
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* ** ** *
2400509 CGTATGCCTAAGCCAACTGACGAAATGAGCGGGTAGGCGATCA-TGACACCGGCCAGAGAGGCGG
66 CGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACT-ACGCCGGCCAGAGAGGCGG
* * * *
2400573 GATGCGCAAGCCATAGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTACCAT
130 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
* ***
2400638 CCCAATTTTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
195 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
2400703 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GTTCGGGATTTTTT
260 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * * * * *
2400767 ATAAAATTTTTTCAGAAGGAGTTTCGGCCTCACACTTGGAAGACATGATCCTTGCATTTTTCTTG
325 -TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * * *
2400832 GCATGCACAAAACAATTCGGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTGGAAAAAAG
389 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* * * *
2400897 TATCCCCATTTCAGACATTTTAATGGGTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
2400962 AGGGGATGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* *
2401027 CCCATCGCACATCATGTGC-CGACA-CCCCCGCCCCCCAATCG-CTGGAATCCCAATGCCG-CTG
584 CCCATCGCACATCATGTGCGC-ACACCCCCCGCCCCCCAATCGTC-GAAACCCCAATGCCGTC-G
* * * * * *
2401088 ATAAGGTTCT-C--CGA--------CGATGGTGCCCC-AGCCAAAAAAAATGGGGCAGCAGCACA
646 GTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACA
* * * * * * * *
2401141 TGTCCGAGCCTAGCATGTACACCTGTAACCCTTGGTCTGGTCTGATCTTACACTGGGAATGAACT
711 TGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACT
* * * *
2401206 CCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGCC
776 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
2401271 GCTCAACCGACCAGAGGGGCAGGAAGCGGAAGCCGGGGATCGACCGGGTCCCCCCC
841 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGT-CCCCCC
* * * * *** *
2401327 TACGTGCTACCGATCCTACTGCCGCAACCGTCAGTCCAATCCT-ATCTTGGACTGGGAATGAACT
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACT
* ** *
2401391 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCTAGCCAGAGTAGACG
65 CCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAG-AGGCG
* * *
2401456 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTTATATTTTTGCCA
129 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* * * * *
2401521 TGCCAATGCAATTTTTATGACTCGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTCAAGTTT
194 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * ** *
2401586 CATGGCAAGACGACTTGTTTTATATTTTTAACGATTTTCAAAACTTTTTACGGTTTGGGA-TTTT
259 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* ** * * * * ***
2401650 TGAAAATTTTTTTTGATGGAGTTTTGGCACCACACTTTGTAGATGCGATCCTT-TAATTTTT-TT
324 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT-ATTTTTGTT
* * * *
2401713 GGTATACACAAAAAAATTCAACTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
388 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* *
2401778 GTGTCCCCATTTCAGACGCTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
453 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
2401843 AAGGGGGTGTGAGTTCTCGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGT
518 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
2401908 ACCCATCACACATCATGTGCGCACAGCCCCCCCGCTGCCCCAATCATCGGAACCCCAATGCCGTC
583 ACCCATCGCACATCATGTGCGCACA--CCCCCCGC-CCCCCAATCGTCGAAACCCCAATGCCGTC
* * *
2401973 CGTAAGG-T-T------AT-C-CT-GCGATGGTTCCCCGGGCGAAAAAAAATGCGGGCACCAGCA
645 GGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGC-GGCACCAGC-
* *
2402027 ACCTGCCCGAAGCCCAGCATGTGCAACCCGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAAT
708 ACATGCCCG-AGCCCAGCATGTGC-ACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAAT
* * * *
2402092 GAACTCCATATGCTTAGACTGGTAATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCGTG
771 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * *
2402157 CGGG-GCTCAGTCGGCTAGAGGGGCTGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCC
836 CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCC
* * * * ** ***
2402216 TTGCGTGCTACCAATCTTGTTGCCACAACCCTCTATCCCATCTGATCTTAGACTGGGAATGAACT
1 -TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * * *
2402281 CTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCAGGCACTACGTCGGCCAGAGAGGC-G
65 CCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* * *
2402345 GATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTCTACCAT
130 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
2402410 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
195 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* * *
2402475 ATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
260 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * * *
2402540 TTAAATTTTTTCATAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGG
325 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
*
2402605 CATGCACAAAAAAAATTCAGCTAAAAAATCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
390 CATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* * * *
2402670 TGTCCCCATTTCAAACACTTT-ATGGGTACTGGCAGCAAACCTATAAAATCTCAAATGTTCTTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
2402734 AGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
2402799 CCCATCGCACATCATGTGCGCACACCCCCTGCCCCCCCAATCGTCGGAACCCCAATACCGTCGGT
584 CCCATCGCACATCATGTGCGCACACCCCCCG-CCCCCCAATCGTCGAAACCCCAATGCCGTCGGT
* * * * *
2402864 CAGGTTCT-C--CGA--------CGATGGTGCCCCGGGTGAAAAAAAATACGACACCAGTAGATG
648 CAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATG
* *
2402918 CCCGAGCCCAGCATTTGCACCCGTAA-CC-C--T-C-G---G----T---CT----A-G---TCC
713 CCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCC
* * * *
2402959 -AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCATGAAACAAGCGTGCGGGCGC
778 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
2403022 TCAGTCC-GCCAGAGGGGCA-GATGCGCAAGCCGGGGATCGACCGGGTCCCCCCC
843 TCAG-CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGT-CCCCCC
* * * * * *
2403075 TGCGTGCTACCGATCTTGCTGCCACAACCCTTGGTTTGGACTGATCTTATACTGGGAATGAACTC
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * *
2403140 CGTATGCCTAAACCAACTGACGAAATGAGCGAGCGGGCCGGCACTACACCGGCCAGAGAGGCAGG
66 CGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* *
2403205 ATGCGCAAGCCATGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
131 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* *
2403270 CCAATGCCATTTTTATGGCTTATAAATTCATACAATAGTCCCTTAAGCCTTCATGTGAAGTTTCA
196 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
2403335 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GTTCGGGATTTTTTA
261 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-
* * * * * *
2403399 TAAATTTTTTTCAGAAGGAGTTTCGGCCTCACACTTGGAAGACATGATCCTTGCATTTTTGTTGG
325 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
* * * * *
2403464 CATGCACAAAACAATTCGGCTAAAAACTTGAAGTGTAAAGGATTTTGTGACCATTTGAAAAATGT
390 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
* * * * *
2403529 ATCCCCATTTCAGACACTTTAATGGGTACTGGAAGCAAACCTATAAAACCTCAAATGCTCTTTAA
455 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
2403594 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCAC
520 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
2403659 CCATCGCACATCATGT--GCAC-CCCCCCGCCCGGCCCAATCGTCAAAACCCTAATGCCGTCGGT
585 CCATCGCACATCATGTGCGCACACCCCCCGCCC--CCCAATCGTCGAAACCCCAATGCCGTCGGT
* * * * * * * *
2403721 CATGTTCTTCGACGATGTTCCGGCGATGGTCCCCCGAGCGAAAAAAAATGTGGCACCAGCACATG
648 CAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATG
* * * * ** * * *
2403786 CTCGAGCCCAGTACGTGCACCTGCAACCCTCCATCCAGTCCAATCTTAGACTGGGAATGAACTCC
713 CCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCC
* * ** * *
2403851 ATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATAAAATGAGCGTGCGGGTGC
778 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * **
2403916 TCTGTCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCC
843 TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCC
** * * * * * ** *
2403969 TATGTGCTGCCAATCCTACTGCTGCAACCCACCATCTGGTCTAATCTTAGACTGGGAATGAACTC
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * *
2404034 TGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGAGCA-TGACACCGGCCAGAGAGGCGG
66 CGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACT-ACGCCGGCCAGAGAGGCGG
* * * * * *
2404098 GATGCGCAAGCCATAGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCATCAAATTTCTACCAT
130 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
2404163 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
195 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
*
2404228 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-TGTTCGGGATTTTTT
260 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * *
2404292 ATAAAATTTTTTCAGAAGGACTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTT
325 -TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * *
2404357 GCATGCACAAAAAAATTCAACTAAAAACTCGAAGCGTACAGGATTTTGTGACC-TTTCCAAAAAA
389 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT-GAAAAAA
* *
2404421 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATGTCAAATGCTCTTT
453 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * *
2404486 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTGCCAGC
518 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * ** ** * *
2404551 ACCCGTTGCACATCATGTGCGCACAACCCCCTACCCCCAATCGTC-AGAACCTTAATGCTGTCGA
583 ACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGA-AACCCCAATGCCGTCGG
* * ** * *
2404615 TCTGGTTCTCCGGCGATGCTCCT-ACGATGGTGCCTTGGGCAAAAAAAAAAAATGTGGCACCAGC
647 TCAGGTTCTCCGGCGATGCT-CTGGCGATGGTGCCCCGGGC---GAAAAAAAATGCGGCACCAGC
* * * *
2404679 ATAAT-CCC-AGCCCAGCATGTGCACCCGCAACCCTCAGT---AT--G--CTTAGACTGGGAATG
708 A-CATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATG
* * *
2404735 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTAC
772 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * ** * * *
2404800 AGGCGCTCAGTCGACCAGAGGGGCAGGATGCACAAGCCAAGGATCGGCTGGGTGCCCCCT
837 GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGT-CCCCCC
* * * * ** *** * *
2404860 TGCATGCTGCCGATCCTGTTGACGCAACCCTCAATCCAATCCGATCATAGACTGGGAATGAACTC
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * * * * *
2404925 CGTTTGCCTAAGCGAACCGATGAAACAAGCGGGCGGACGGGCACTACGCTGGCCAAAGAGGCAGG
66 CGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
2404990 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
131 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* *
2405055 CCAATGCCATTTTTATGGCTTGTCAATTTATACAATGGTCCCTTAAGCCTTC------A---T-A
196 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* **
2405110 T-----GA--A---G-TTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCACGATTTTTTT
261 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTT
* *
2405164 TAAAA-CTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGG
325 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
* * *
2405228 CATGCACAAAAAAATTCAGCT-AAAACTTGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAAT
390 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
2405292 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA-CTGTAAAATCTCAAA-------TAA
455 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
2405349 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCTAAAATAAGGGCCAAGCACCAGCAC
520 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
2405414 CCATCGCACATCATGTGCGCACA------GCCCCCCAATCATC-AGAACCCCAATGCCGCCGGTC
585 CCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGA-AACCCCAATGCCGTCGGTC
* * *** *
2405472 ATGTTCT-C--C-A-G---T---GATGGTGCCCCGAGCGAAAAAAAAAATGGCACCAACACATGC
649 AGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGC
* *
2405526 CCGAGCCCAGCATGTGCACCTGCAA--C-C-GT-TGGTCCGA---T---CT--G-AT---CT---
714 CCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCG
* * * * * * **
2405571 TA--C----ACTGGGAATTAACTTCGTATGCCTAAGTGAACCGACGAAACGAGTGAGCGGATGCT
779 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * ** *
2405630 CAGCTGGCCAGA-GGGTAGGATGCACAAGCTGGGGATCGGTCAGGTCTCCCCC
844 CAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTC-CCCCC
*** * * * * * * *
2405682 TATATGCTGCCAATCCTGCTACAGCAACCCTTGATCTGGT-TCAATCTTAGACTGGGAATGAACT
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACT
* ** ** ** * *** ** * * * *
2405746 CCGTATGCAC-AAGTC-AGGGATTAGTCGGGTCCCCCCTGCGTG--CT--GCTGATCC---TA--
65 CCGTATGC-CTAAGCCAACTGACGAAACGAG-CGGGCGGGCGGGCACTACGCCG-GCCAGAGAGG
* * * * * ** * ** *** * * *
2405800 C--TA-CCGCAA-CCCTCGG-TC--T-GGTTTG-ATCTTGGACTAGG-A-ATGAAC-TCTGTATG
127 CGGGATGCGCAAGCCGT-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * * ***** * ** *** ** ** * ***
2405853 CCTACGCCAACCGACAAAACGAGCGGGC--GGGAGGGCACTACACCGG--CCAGAGAGGCAGGAT
191 CC-ATGCCAA-TGCCATTTTTA--TGGCTTGTAAATTCA-TACAATGGTCCCTTA-AGCCTTCAT
* * * ** * * * * *
2405914 GCGTAAG--CCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGC-ACATCTTC-CTATTTCTGCCA
250 GTG-AAGTTTCATGG--C-A-A--GACG-A-CTC-GTTT--TCTA-TTTTTCACGATTT-T----
* * * ** ** * ** ** ** ** *
2405975 TGCCAATGCCATTTTTATGGCTT--GTAAATTCATACAATGGTCCCTTAA-GCCTTCATGTG---
297 TG--AA--AC-TTTTTACGG-TTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTT-TTG-GCCC
** ** * * * * * * * * *
2406034 -AAGTTTCAT-GGCAAGA-CGACTCGT-TTTCTATT---TTTCAC-----AATT---TTTAAAAC
354 CAAACTTGGTAGACATGATC--CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
** * *** * * *** * *
2406084 TTTTTACG-GTTTGGGATTTTTTTAATTTTTTCAAAAAGTAGTTTTGGCCCCAAACTTGGT-AGA
417 --TCGAAGTGTACAGGA-TTTTGTGACCATTTGAAAAA--AG---TGTCCCC--A-TT--TCAGA
** * * *** *** *
2406147 CGTGATCCTTGT-AT-TTTTCTTGGCATGCACAA----AAAAAT-TC--A-GCT-AAAAACTAGA
469 C---A--CTT-TAATGGCTAC-TGGCA-GCA-AACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * ** * ** ** * * **
2406201 AGT--GTACAAGA-TTTTG-TGA-CCAT---TTG--AA-A-AAGTGTCCCCA-TTTCAGACACTT
525 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG-G-GCCAAGTACCAG-CAC--
** * * * * *** ** * **
2406253 TAATGGC-TA-C-TG-GCAGCA-A--ACCTG---TAAAATC-TC-AAATGCTCTTTAAGGGGGT-
585 CCATCGCACATCATGTGC-GCACACCCCCCGCCCCCCAATCGTCGAAA--C-C-CCAATGCCGTC
* * * * ** * * * * * *
2406305 -GTGA-ATTCT-CGAG-GTTTGATGAGG-GATAG-G----GGGC-CAATATAA-G-GGC-CAAGT
645 GGTCAGGTTCTCCG-GCG-ATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGC
* ** * * * * * * * * * * *
2406356 ACCA-GCACCCATCGCATATCATGTGCGCACAC-CCCCCCCG-CCCG-CCAAT-TGTCGAAAC-C
708 A-CATGC-CCGA--GCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCT-T--ACACTG
** * * *** * * * *
2406415 CCAATG-CCGCCGGTCATG-TTCTTC-GGCG-ATG--CTCCG-ACG-AT-GGTGC--CCCGGGCG
766 GGAATGAACTCC-GT-ATGCTTAGACTGG-GAATGAACTCCGTATGCCTAAGT-CAACCC--ACG
* *** * * * * * *
2406469 AAA-AAAAATGC-AGCAC-CAGCACATGCCCGAGGCCTGCATGTGCACT-CGCAA-CC----CTC
825 AAACGAGCGTGCGGGCGCTCAGC-C-GGCCAGAGG--GGCA-G-G-A-TGCGCAAGCCGGGGATC
2406525 GATCC-GGT-----C
882 GA-CCGGGTCCCCCC
* ** ** *
2406534 TG-ATTTTA-C-A--CTG--G--G-AA---T-GAAC---TCAGCATGCTTAGACTGGGAATGAAC
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTG-AT-CTTAGACTGGGAATGAAC
* * * * * * * * * *
2406582 TCTGTTTGCCTAAGTCAAC-GCACAAAACGAGTGTGC-GG-GAGCTC-A-GCCGACCAGAGGGGC
64 TCCGTATGCCTAAGCCAACTG-ACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
* * * ** ****** * * ** *
2406642 AGGATGCGCAAGCTGGGGATCG---GCCTGGT--CCCCCCTT----ACGTGCTGCCGA-TCCTG-
128 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT-CTTCATATTTCTGC
* * ** ** * ** * ** * * *
2406696 C-TGCCACA-ACCCTTGGTCCGGTTTG-ATCTT-AGACTGGGAATGAACTCCATACGCCTAAGCC
192 CATGCCA-ATGCCATTTTTATGGCTTGTAAATTCATAC----AATGGTC-CCTTAAGCCT---TC
* ** * * * ** * ***** * **
2406757 AACTGACGAAACG-AGCAGGCGGGCGAGCACAACGTCG--GCCAAAAAGGCAGGA--TGCGCAAG
248 -A-TG-TG-AA-GTTTCA---TGGCAAG-ACGAC-TCGTTTTCTATTTTTCACGATTTTTG-AA-
* ** * * * * * * *
2406817 CCATGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTTTGCCATGCCAATGCCA
301 AC-T---T-TTTACGGT--T-CG-GGATTT-T-----T-TTAAAATTTTT-TCA-G--AA-G-GA
* *** ** * * ** *
2406882 TTTTTATGGCTTGTAAA-TTCATACA-ATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAG
344 -GTTT-TGGC-CCCAAACTTGGTAGACATGAT-CCTT--G---T-AT-T----TTTGTTGGCATG
*** *** * * ** * * * * **
2406945 ACTACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACG-GTTC-GAGATTTTTTTTAAAA
394 -C-A--C----AAAAAAATTCA-G---CTAAAAAC--TCGAAGTGTACAG-GA-TTTTGTGACCA
* ** * *** **
2407008 TTTTTTCAAAAGGGGTTTTGGCCCCAAACTTGGT-AGACATGATCCTTGT-ATTTTTTTTGGCAT
443 ---TTTGAAAA-AAG---TGTCCCC--A-TT--TCAGAC---A--CTT-TAATGGCTACTGGCA-
* * ** * **** * * **
2407071 GCACAA----AAAAATTCAGCTAAAAACTC--GAAGTGTACAG-GA-TTTTGTGACCATTTGA--
489 GCA-AACCTGTAAAA-TC-TC-AAATGCTCTTTAAG-GGGGTGTGAGTTCT-CGA-GGTTTGATG
* * * ** * * * * ** *** *** * * * * *
2407126 A--AAAAGTGTCCCCATTTCA--GACACTTTAATGGCTACTGGTAGCA-AACCTGT---AAAATC
547 AGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGC-ACCCATCGCACATCATGTGCGCACA-C
**** * *** ** * ** * * * * * ** * * * *
2407183 TCAAATGCTCTTTAAGGGGGTGTGAATTCTCGA-G--GTTTGATGAGG-GAT-AGGGGGT-CAAC
609 -CCCCCGCCCCCCAA--TCGT-CGAAACCCCAATGCCG-TCGGTCAGGTTCTCCGGCGATGC-TC
* * ** * * ** * * * **
2407242 ATAAGGTCCA-AGTACCAGCACCC-ATCG-CATATTATGTGCGCA-CACCCCCCG-CC-A-CCCA
668 -T--GG-CGATGGT----GC-CCCGGGCGAAAAAAAATGCG-GCACCAGCACATGCCCGAGCCCA
* * * *
2407300 --ATCGTCGGAACCC-CAATGCCGTCGGTCAGGT----TC-T-C-C-GGCG-ATG--CTCCG-AC
723 GCAT-GT--GCACCCGCAA--CCCTCGGTCCGGTCCGATCTTACACTGG-GAATGAACTCCGTAT
* * * * ** * * * * * * *
2407350 GATGATGCCCCGGGCAAAAAAAAT--GT-GGCAC-CAG-CACATGCC-CGAACCCAGGATGTGCA
782 GCTTA-G-ACTGGG--AATGAACTCCGTATGC-CTAAGTCA-A-CCCACGAAACGA-G-CGTG--
** * * * * * * *
2407409 CCCGCAACCCTCGGTCCGGTCCGATCTTAGGCTGGGAATGAACTTCGTACGCTTAGACTGGGAAT
836 --CG-GGCGCTCAG-CCGG-CC-A---GA-G--GGGCA-GGA--T-G--CGC-AAG-CCGGG---
** **
2407474 GAACTTCGTATGCCTAAGTCAACCC
878 G-A--TCG-A--CC-GGGTCCCCCC
* * * * * * * * ** * * *** ** *
2407499 -AC--G-AAACGAGCGTGCGGGCGC-TCAGTCGGCCAAAGGGGAAGGATGCGCA-AGCTGGGGAT
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTC----TGGTCTGAT-CTTAGA-CTGGGAAT
** * * * *** * *** ** * *
2407558 CGGTCGCTCCCCCCTATGTGCTACTGATCTTGCTG-CCATAACCCTCTGTCCGGTC-TG-ATCTT
60 --G-AACT---CCGTA--TGC--CTAAGCCAACTGACGA-AACGAGC-GGGCGGGCGGGCA-C-T
** ** ** * * * *** *
2407620 A-GACTAGAAATGA-ACTCCGTATGC-CTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCATT
111 ACG-CCGGCCA-GAGAGGCGGGATGCGC-AAG----CCG-TG----GATCGATAGGG-TGG---T
* *** * * ** * ** *** *
2407682 ATGTCGGCCAGAGAGACGGGATGCGCAACCGTGGATCGATTTGGTGGTAGGTGGGTTTAGGCACA
160 AGGT-GG---G-TTTA---G--GCAC-ATC-TTCAT--ATTT-CTGCCA--T--GCCAATGC-CA
* * ** * *** * * *
2407747 TCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATATGATGGTCCCTT-A
205 --TT--T-TTATGGCT-TGTAAAT-TCA-TACAAT-G---G----TCCCT-T-A-AG--CCTTCA
* * ** * *
2407811 AGCCTTAATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTCTTTTTCACAATTTTTGAAACTTT
249 TG--TGAA-GT----TTCA-TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * **
2407876 TTATGGTTCAGGATTTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCCATACTTGGTAGATGTG
306 TTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
* * * *
2407941 ATCCTTGTATTTTTGATGGCATGCATAAAAAAATTAAGCTAAAAACTCGTAGTGTACAGGATTTT
371 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* * *
2408006 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAACAAAACTGTAA
436 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
2408071 AATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAAGGATAGGGGCCCAATAT
501 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
2408136 AAGGGCCAAGTAGCAGCACCCATCGCACATTATGTGCGCACACCCCCCCGCCCCCCAATCG-CAG
566 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCAATCGTC-G
* * * * ** * * * * *
2408200 GAACCCCAATGTCGCCGGTCAGGTTCTCTGATGATGCT-TCGGTGATGGTACCTCGAGTG-AAAA
629 AAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCT-GGCGATGGTGCCCCGGGCGAAAAA
* * * * ** * * *
2408263 AATTACGGCACCAGCATATGCCCAAGCATAGCATGTGCACCCGTAACCATCGGTCCAGTCCGATC
693 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATC
* * * * *
2408328 TTACATTGGGAATGATCTCCGTATGCTTAGACTGGGATTAAACTTCGTATGCCTAAGTCAACCCA
758 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * ** * * *
2408393 CGAAACGAGCGTACGGGTGCTCAATCGGCCAGAGGGGTAGGATGCGCAAGTCGGGGATCGATCGG
823 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGG
*
2408458 ATCCCCCCC
888 GT-CCCCCC
* * * * * *
2408467 TGTGTGCTGCCGATCTTGCTGCTGTAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTC
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * * * *
2408532 CGTATGCCTAAGCCAATTGACAAAATGAGTGGACGGGCGGGCACTACGTCGGCTAGAGAGGTGGG
66 CGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* * * *
2408597 ATGCGCAAGCTGTGGATCAATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTACTGCCATG
131 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* * *
2408662 CCATTGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCTCTTAAGCCTTCATGTGAAGTTTCA
196 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* *
2408727 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTA
261 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT
* * *
2408792 AAAATTTTTTCAGAAGGTGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGC
326 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
* * * * *
2408857 TTCCACAAAAAAATTCAGCTAAAAACACGAATTGTACAGGATTTTGCGACCATTTGAAAAAAGTG
391 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
**
2408922 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACACTCTTTAAG
456 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
2408987 GGGGTGTGAGTTTTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
521 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
** * **
2409052 CATCGCACATCATGTATGCACACCCCCCACACCCCCCCAATCGTC-AGAACCTAAATGCCGTCGG
586 CATCGCACATCATGTGCGCACA-CCCCC-C-GCCCCCCAATCGTCGA-AACCCCAATGCCGTCGG
*** * *
2409116 TCAGGTTCTCCCATGATGCT-TCGGCGATGGTGCCCTGAGCGAAAAAAAATGCGGCACCAGCACA
647 TCAGGTTCTCCGGCGATGCTCT-GGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACA
* * * *
2409180 TGCTCAAGCCCAGCATGTGCACCTGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACT
711 TGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACT
* *
2409245 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGC
776 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * ** *
2409310 ACTAAGCCAGCTAGAGGGGCAGGATACGCAAGCTGGGG-TTTAGCCGGGGCCCCCC
841 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCC
* * * * ** * * * *
2409365 TGTGTGCTGCGGATCCTACTGTGGCAACCCTTGGTCTAGT-TCAATCTTAGATTGGGAATGAACT
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACT
* * * *
2409429 CCGTATGCCTAAGCCAACTAACGAAACGAGTGGGCGGGCGGGCACTACGCCGACCAGAAAGGCGG
65 CCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* * * *
2409494 GATACGCAAGCCGCGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATACTTCTGCCAT
130 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
2409559 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
195 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* ** **
2409624 ATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTACTATTCAAGATTTTTT
260 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * * *
2409689 TAAGATTTTTTCATAAGGTGTTTTGACCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
325 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
* * ** *
2409754 CATGCACAAAAGAATTCAGCTAAAAACTCAAAGTGTATTGGA-TTTGTGACCATTTG-GAAAAGT
390 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
2409817 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
455 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
2409882 GAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCAC
520 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
2409947 CCATCGCACATCATGTGCACACACCCCCTGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTC
585 CCATCGCACATCATGTGCGCACACCCCCCG-CCCCCCAATCGTCGAAACCCCAATGCCGTCGGTC
** * * * * * *
2410012 AGGTTCTTTGGTGATGCTCCGACGATGGTGCCCTGGGTGAAAAAAAATGCGACACCAGCACATGC
649 AGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGC
* * * * ** *
2410077 TCGGGCCTAGCATGCAG-ACCCGCAACCCTCATTCCAGTCCGATCTTACACTGGGAATGAACTCC
714 CCGAGCCCAGCATG-TGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCC
* * * *
2410141 GTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCATGAAACGAGCGTGTGGGCGC
778 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * ** *
2410206 TCAGCCGACCAAAGGGGCAGAATGCCCAAGTCGGGGATCGGTCGGCTCCCCCC
843 TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCC
* * * * **
2410259 TGCGTGCTACCGATCTTGCTACCACAACCCTTGGTCTAATCTGATCTTAGACTGGGAATGAACTC
1 TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * * * * *
2410324 CGTACGCCTAAGCCAACCGATGGAACGAGCGGACGAGCGGGCACTACGTCGACCAGGGAGGCGGG
66 CGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* * * * * * *
2410389 ATGTGTAAGTCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGCCTTT
131 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* *
2410454 CCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTAATGTGAAGTTTCA
196 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * * *
2410519 TGGCGAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCGAGATTTTTTT
261 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT
*
2410584 AAAATTTTTTCAGAAGTAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
326 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
* *
2410649 ATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
391 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
* * *
2410714 TCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAATCTATAAAATCTCAAATGCTCTTTAAG
456 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * *
2410779 GGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAACACC
521 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
2410844 CATTGCACATCATGTGTGCACACCCCCCGCCCCCCCAATCGTC-AGAACCCCAATGCCGTCGGTC
586 CATCGCACATCATGTGCGCACACCCCCCG-CCCCCCAATCGTCGA-AACCCCAATGCCGTCGGTC
* * *
2410908 AGCTTCTCCGACGATGCT-TCGGCGATGGTGCCCCGGGCGAAAAAAAATGGGGCACCAGCACATG
649 AGGTTCTCCGGCGATGCTCT-GGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATG
** * * * * * * *
2410972 TTCGAACCCAGCATGTGCACCTGGAACCCTCGGTCTGGTCTGATCTTACGCTGGGAATGAACTCT
713 CCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCC
* *
2411037 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGC
778 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * *
2411102 TCAGCCGGCCAAAGGGGCAGGATGCCCAAGCCGGGGATCGATCGGGTCCCCCC
843 TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCC
* * * **
2411155 TACGTGTTATCGATCCTGCTAG-TACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
1 TGCGTGCTACCGATCCTGCT-GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * * * *
2411219 CCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGAGCACTCCGCCGGCCAGAGAGGTGG
65 CCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* * *
2411284 GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCCAT
130 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
2411349 GCCAATGCCATTTTTATGG-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
195 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* * *
2411413 ATGGGAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTGT
260 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * *
2411478 TAAAATTTTTTCAAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
325 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
2411543 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
390 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
* *
2411608 GTCCCCATTTTAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
455 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
2411673 GGGGGTGTGAGGTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCTATGTACCAGCA
520 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCA
* * * * **
2411737 CCTATCGCACATCATGTGTGCACACCACCCCTTCGCCCCCCAATC-ACCAGAACCCCAATGCCAC
584 CCCATCGCACATCATGTGCGCACA-C-CCCC--CGCCCCCCAATCGTCGA-AACCCCAATGCCGT
** * *** * *
2411801 CGGTCAGGTTCTCCTACGATGCT-TCAGCGATGGTGCCCCGAATGAAAAAAAAATGTGACACCAG
644 CGGTCAGGTTCTCCGGCGATGCTCT-GGCGATGGTGCCCCGGGCG-AAAAAAAATGCGGCACCAG
* * * * * * *
2411865 CACATGTCTGAGCCCAGAATGTGCACCTGCAACCCTCGGTCTGGTCTGATCTTACATTGGGAATG
707 CACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATG
* * * * * * * *
2411930 AAATCTGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGAGTAC
772 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * *
2411995 GGGCGCTCAGCCGGCCAGAGAGGTAGGATGCACAAGCC
837 GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
2412033 AGGTGTCACG
Statistics
Matches: 15206, Mismatches: 2573, Indels: 1793
0.78 0.13 0.09
Matches are distributed among these distances:
803 7 0.00
804 12 0.00
805 11 0.00
806 14 0.00
807 7 0.00
808 1 0.00
810 5 0.00
811 7 0.00
812 2 0.00
814 2 0.00
816 1 0.00
818 4 0.00
819 2 0.00
820 2 0.00
821 8 0.00
822 93 0.01
823 56 0.00
825 1 0.00
827 1 0.00
828 1 0.00
829 3 0.00
830 5 0.00
831 6 0.00
832 24 0.00
833 1 0.00
834 10 0.00
835 28 0.00
836 39 0.00
837 69 0.00
838 22 0.00
839 30 0.00
840 30 0.00
841 43 0.00
842 39 0.00
843 25 0.00
844 39 0.00
845 30 0.00
846 15 0.00
847 18 0.00
848 6 0.00
849 4 0.00
850 7 0.00
851 9 0.00
852 3 0.00
853 3 0.00
854 3 0.00
855 39 0.00
856 9 0.00
857 100 0.01
858 339 0.02
859 389 0.03
860 139 0.01
861 599 0.04
862 98 0.01
863 15 0.00
864 9 0.00
865 1 0.00
866 1 0.00
867 6 0.00
868 70 0.00
869 76 0.00
870 115 0.01
871 14 0.00
872 55 0.00
873 601 0.04
874 17 0.00
875 3 0.00
876 6 0.00
877 2 0.00
878 2 0.00
879 4 0.00
880 11 0.00
881 364 0.02
882 739 0.05
883 659 0.04
884 228 0.01
885 54 0.00
886 106 0.01
887 23 0.00
888 290 0.02
889 73 0.00
890 415 0.03
891 663 0.04
892 374 0.02
893 65 0.00
894 1634 0.11
895 1058 0.07
896 1991 0.13
897 378 0.02
898 745 0.05
899 493 0.03
900 32 0.00
901 162 0.01
902 392 0.03
903 4 0.00
904 5 0.00
905 6 0.00
906 4 0.00
907 2 0.00
908 7 0.00
909 8 0.00
910 2 0.00
911 7 0.00
912 1 0.00
913 4 0.00
914 1 0.00
915 2 0.00
916 8 0.00
917 10 0.00
918 8 0.00
919 10 0.00
920 4 0.00
921 8 0.00
922 8 0.00
924 8 0.00
925 10 0.00
926 7 0.00
927 5 0.00
928 4 0.00
929 14 0.00
930 8 0.00
931 2 0.00
932 8 0.00
933 2 0.00
934 7 0.00
935 5 0.00
936 2 0.00
938 1 0.00
939 3 0.00
940 6 0.00
942 1 0.00
943 5 0.00
944 5 0.00
946 1 0.00
947 2 0.00
948 5 0.00
952 2 0.00
953 2 0.00
956 5 0.00
957 19 0.00
958 14 0.00
959 3 0.00
960 5 0.00
962 5 0.00
963 1 0.00
964 1 0.00
965 3 0.00
966 3 0.00
967 1 0.00
968 15 0.00
969 5 0.00
970 2 0.00
971 4 0.00
972 9 0.00
973 8 0.00
974 3 0.00
977 3 0.00
978 2 0.00
979 4 0.00
980 12 0.00
981 2 0.00
982 2 0.00
983 2 0.00
984 2 0.00
985 4 0.00
986 2 0.00
987 3 0.00
988 13 0.00
989 26 0.00
990 28 0.00
991 26 0.00
992 11 0.00
993 31 0.00
994 26 0.00
995 28 0.00
996 12 0.00
997 7 0.00
998 13 0.00
999 9 0.00
1000 11 0.00
1001 18 0.00
1002 13 0.00
1004 4 0.00
1005 9 0.00
1006 5 0.00
1007 8 0.00
1008 2 0.00
1010 1 0.00
1011 5 0.00
1017 1 0.00
1018 1 0.00
1019 10 0.00
1023 1 0.00
1024 50 0.00
1025 37 0.00
1026 54 0.00
1027 42 0.00
1028 57 0.00
1029 51 0.00
1030 194 0.01
1031 66 0.00
1032 66 0.00
1033 152 0.01
1034 77 0.01
1035 44 0.00
1036 25 0.00
1037 43 0.00
1038 172 0.01
1039 108 0.01
1040 86 0.01
1041 74 0.00
1042 141 0.01
1043 10 0.00
1044 22 0.00
1045 34 0.00
1046 28 0.00
1047 11 0.00
1048 5 0.00
1049 15 0.00
1050 10 0.00
1051 16 0.00
1052 15 0.00
1053 19 0.00
1054 30 0.00
1055 11 0.00
1056 8 0.00
1057 54 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT
AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGAAACCCCAATGCCGTCGGTCAG
GTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCC
GAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCC
Found at i:2398598 original size:25 final size:26
Alignment explanation
Indices: 2398564--2398613 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2398554 CTGGTCCAAT
2398564 CTTACACT-GGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
2398589 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
2398614 ACCTAGGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2401223 original size:26 final size:26
Alignment explanation
Indices: 2401187--2401239 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2401177 CTGGTCTGAT
2401187 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
2401213 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2401239 C
1 C
2401240 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2402118 original size:26 final size:26
Alignment explanation
Indices: 2402078--2402130 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2402068 CCGGTCTGAT
2402078 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* * *
2402104 CTTAGACTGGTAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
2402130 C
1 C
2402131 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:2403859 original size:26 final size:26
Alignment explanation
Indices: 2403830--2403882 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2403820 CCAGTCCAAT
2403830 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2403856 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2403882 C
1 C
2403883 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2404751 original size:26 final size:26
Alignment explanation
Indices: 2404715--2404772 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
2404705 GCAACCCTCA
2404715 GTATGCTTAGACTGGGAATGAACTCC
1 GTATGCTTAGACTGGGAATGAACTCC
2404741 GTATGCTTAGACTGGGAATGAACTCC
1 GTATGCTTAGACTGGGAATGAACTCC
2404767 GTATGC
1 GTATGC
2404773 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
GTATGCTTAGACTGGGAATGAACTCC
Found at i:2407470 original size:26 final size:26
Alignment explanation
Indices: 2407434--2407483 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2407424 CCGGTCCGAT
*
2407434 CTTAGGCTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTTCGTACG
2407460 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTGGGAATGAACTTCGTA
2407484 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTACG
Found at i:2409262 original size:26 final size:26
Alignment explanation
Indices: 2409226--2409278 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2409216 CCGGTCTGAT
2409226 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
2409252 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
2409278 C
1 C
2409279 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:2410149 original size:26 final size:26
Alignment explanation
Indices: 2410120--2410169 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2410110 CCAGTCCGAT
2410120 CTTACACTGGGAATGAACTCCGTAAG
1 CTTACACTGGGAATGAACTCCGTAAG
*
2410146 CTTAGACTGGGAATGAACTCCGTA
1 CTTACACTGGGAATGAACTCCGTA
2410170 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTAAG
Found at i:2411944 original size:26 final size:26
Alignment explanation
Indices: 2411915--2411967 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2411905 CTGGTCTGAT
* *
2411915 CTTACATTGGGAATGAAATCTGTATG
1 CTTACACTAGGAATGAAATCTGTATG
* *
2411941 CTTAGACTAGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAAATCTGTATG
2411967 C
1 C
2411968 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTACACTAGGAATGAAATCTGTATG
Found at i:2416157 original size:25 final size:25
Alignment explanation
Indices: 2416115--2416165 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
2416105 CCAGTCCGAT
2416115 CTTACACTGGGAATGAACATCGTATG
1 CTTACACTGGGAATGAAC-TCGTATG
*
2416141 CTTAGACT-GGAATGAACTCGTATG
1 CTTACACTGGGAATGAACTCGTATG
2416165 C
1 C
2416166 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 8 0.33
25 9 0.38
26 7 0.29
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
CTTACACTGGGAATGAACTCGTATG
Found at i:2416923 original size:26 final size:26
Alignment explanation
Indices: 2416887--2416939 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2416877 CCGGTCCTAT
*
2416887 CTTACACTGGGGATGAACACCGTATG
1 CTTACACTGGGAATGAACACCGTATG
* *
2416913 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACACCGTATG
2416939 C
1 C
2416940 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACACCGTATG
Found at i:2419313 original size:911 final size:893
Alignment explanation
Indices: 2416604--2419520 Score: 3811
Period size: 896 Copynumber: 3.2 Consensus size: 893
2416594 GTATCCCCAT
2416604 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * * * *
2416669 GAGGGATAAGGGGCCAATATATGGGCCAAGTACCAGTACCCGTCACACAGCATGTGCGAACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG--CA-CA
* * * * ** *
2416734 CCCTCCCGTGCCCCCCAATCATCGGAACCCCAATGTCGCCGGTCAGGTTGTCCGGCAATGCTCCG
128 CCC-CCCG-CCCCCCCAATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCAACGATGCTCCG
* * * * *
2416799 GCGATGGTGCCCCAAGCTAAAAAGAAATGCGACACCAGTACATGCTCGAGCCCAGCATGTGCACC
191 ACGATGGTGCCCC-GGGTAAAAAAAAATGCGGCACCAGTACATGCTCGAGCCCAGCATGTGCACC
* * * *
2416864 CGTAACCCTCGGTCCGGTCCTATCTTACACTGGGGATGAACAC-C-GTATGCTTAGACTGGGAAT
255 TGTAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAA-ACTCTGTATGCTTAGACTGGGAAT
* ** **
2416927 GAACTCCGTATGCCTAAATCAACATATGAAACGAGCGTACGGGTGCTCAA-CCGGCCAGAGGGGC
319 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGAACTCAAGCCGGCCAGAGGGGC
* * * * * ** * *
2416991 AGGATGCACAAGTCGAGGATCGACCTGGTCCCAACTAT-GTGCTATC-AATCCTACTACCACAAC
384 AGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCT-TCGTG-T-TCTGATCCTACTACCGCAAC
* *
2417054 CCTCGGT-TCGGTCTGATCTTAGATTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACG
446 CCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * *
2417118 AGCGGGCGGGCGAGCACTATGTCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTG
510 AGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* ** *
2417183 GTAGGTGGATTTAGGCACATCTTCATATTTCTATTGTGCCAATCCCATTTTTATGGCTTGTAAAT
574 GTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
2417248 TCATACATTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
639 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * *
2417313 CACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGCCC
704 CACGA-TTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTG-CC
* * * *
2417378 CCAAACTTGGTAGACTTTATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
767 CCAAACTTGGTAAACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
2417443 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGC
831 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * *
2417506 TACTAGCAGCAAACCTATAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
2417571 GAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
* * * * * **
2417636 CCCGACCCCTCAATCGCCAGAACCCGAATGTCGTCGGTCAGGTTCTCCAACGATGCTCCGGTGAT
131 CCCGCCCCCCCAATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCAACGATGCTCCGACGAT
* * * * *
2417701 GGTGCCCCGGGTGAAAAAAAATACAGCACCAGCACATGCTCGAGCCCAGCATGTCCACCTGTAAC
196 GGTGCCCCGGGTAAAAAAAAATGCGGCACCAGTACATGCTCGAGCCCAGCATGTGCACCTGTAAC
*
2417766 CCTCGATCCGGTCCGATCTTACACTGGGAATG-AACTCTGTATGCTTAGACCGGGAATGAACTCC
261 CCTCGATCCGGTCCGATCTTACACTGGGAATGAAACTCTGTATGCTTAGACTGGGAATGAACTCC
* * * * *
2417830 GTATGCCTAAGTCAAACCATGAAATGAGCGTACGAGAACTC-AGTCGGCCAGAAGGGCAGGATGC
326 GTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGAACTCAAGCCGGCCAGAGGGGCAGGATGC
* * * * * * *
2417894 GCAAGCCGGGGATTGGTCGGGTCCCCCCTGCATG-CCATCGATCCTACTACCGCAACCGTCAGTC
391 GCAAGCCGGGGATCGGCCGGGTCCCCCCTTCGTGTTC-T-GATCCTACTACCGCAACCCTCGGTC
** * *
2417958 CAGTTTGATCTTAGACTGGGAATGAACTCC-TATGCCTAAGCCAACTGACGAAACGAGCGG-GTG
454 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCG-G
* *
2418021 GCGGGCAACTACGTCGACCAGGGAGAGGCGGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGG
518 GCGGGC-ACTACGTCGGCCA--GAGAGGC-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTA-G
* * *
2418086 GTGGGTTTAGGGCACATCTTCATATTTCT-TCATGCCAATGGCATTTTTACGACTTGTAAATTCA
578 GTGGGTTTA-GGCACATCTTCATATTTCTATCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
2418150 TACAA-CGTCCCTTAAGCCTTCAAGTGAAGTTTCAT-GCAAGATGACTCGTTTTCTATTTTTTCA
642 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCA
*
2418213 CGATTTTGAAACTTTTTACGGTTC-GTATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGCCCCAA
706 CGATTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGCCCCAA
* * *
2418277 CCTGGGTAGAA-GTGATCCTTAGTATTTTTTTGGCATGCACAAAAAAATTCAGCTTAAAAACTCG
771 ACTTGGTA-AACGTGATCCTT-GTATTTTGTTGGCATGCACAAAAAAATTCAGC-TAAAAACTCG
* *
2418341 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGCGGACACTTTAATGGC
833 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
2418402 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * * *
2418467 GAGGGATAGGGGGCCAATATAAGGGCCAGGTACCACCACCCATCATACGTCATGTGCGCATAGCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CC
* * *
2418532 CCTCCGCCCCCCCAATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTCCGATG
130 CC-CCGCCCCCCCAATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCAACGATGCTCCGACG
* * * * **
2418597 ATGGTGCCCCGGGAAAAAAAAAATGTGGCACCAGTACATGCCCGAGCCCAGCTTGTGCACCTACA
194 ATGGTGCCCCGGGTAAAAAAAAATGCGGCACCAGTACATGCTCGAGCCCAGCATGTGCACCTGTA
* ** * * *
2418662 ACCCTTGATCCATTCCGATCTTA-ACTGGAAACTGAAACTCTATATGCTTAGAATAGTGGGAATG
259 ACCCTCGATCCGGTCCGATCTTACACTGGGAA-TGAAACTCTGTATGCTTAG---ACTGGGAATG
* * *
2418726 AAACTCCGTATGCCTAAGT-AACCCACGAAACGACGCGTGCGGGCCACTCAAGCCGGCCAAGAGC
320 -AACTCCGTATGCCTAAGTCAACCCATGAAACGA-GCGTACGGG-AACTCAAGCCGGCC-AGAG-
* * *
2418790 GGGTAGGGATGTGCAAGCCGGGGATCGGCCGGGTCCCCCCCTTCGTGTTGCTGATCCTGCTACCG
380 GGGCA-GGATGCGCAAGCCGGGGATCGGCCGGGT-CCCCCCTTCGTGTT-CTGATCCTACTACCG
* *
2418855 TAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
442 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** * * *
2418920 ACGAGCAGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGCATTGTTAGG
507 ACGAGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
* * *
2418985 TTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCTTTTTTATGGCGTGTA
571 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATTTTTATGGCTTGTA
*
2419050 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTATCATGGCAAGACGACTCGTTTTCTATT
636 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
2419115 TTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTGTTTCAAAAGGATTTTTT
701 TTTCACGATTTT-GAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGA-GTTTT
* * **
2419180 GCCCCAAAACTTGGTAAACGTGATCCTTGTATTCTTGTTGGCATGCAAAAAAAAAAGTCTTCTAA
764 GCCCC-AAACTTGGTAAACGTGATCCTTGTATT-TTGTTGGCATGC-ACAAAAAAATTCAGCTAA
* *
2419245 AAACTCGAAGTGTACAGGATTTTGTGGCCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAAT
826 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
2419310 GGC
891 GGC
* * **
2419313 TGCCGGCAGCAAATGTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
2419378 GAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
* * *
2419443 GCCC-CACCCCCCAATCGTTGGAACCCCAATGTCGTCGGTTAGGTTCTCCAGCGATGCTCCGACG
131 -CCCGC-CCCCCCAATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCAACGATGCTCCGACG
2419507 ATGGTGCCCCGGGT
194 ATGGTGCCCCGGGT
2419521 TGGACTGGGA
Statistics
Matches: 1752, Mismatches: 212, Indels: 94
0.85 0.10 0.05
Matches are distributed among these distances:
893 2 0.00
894 10 0.01
895 87 0.05
896 437 0.25
897 115 0.07
898 203 0.12
899 61 0.03
900 21 0.01
902 131 0.07
903 25 0.01
904 4 0.00
905 26 0.01
906 48 0.03
907 73 0.04
908 67 0.04
909 84 0.05
910 126 0.07
911 220 0.13
912 12 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
CCCGCCCCCCCAATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCAACGATGCTCCGACGAT
GGTGCCCCGGGTAAAAAAAAATGCGGCACCAGTACATGCTCGAGCCCAGCATGTGCACCTGTAAC
CCTCGATCCGGTCCGATCTTACACTGGGAATGAAACTCTGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGAACTCAAGCCGGCCAGAGGGGCAGGATGC
GCAAGCCGGGGATCGGCCGGGTCCCCCCTTCGTGTTCTGATCCTACTACCGCAACCCTCGGTCTG
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCG
GGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTATCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAA
ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGCCCCAAACTTGGTAAA
CGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
Found at i:2422220 original size:26 final size:26
Alignment explanation
Indices: 2422171--2422221 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2422161 CTGGTCCGAT
**
2422171 CTTACACTGGGAATGAACTTCGTATC
1 CTTACACTGGGAATGAACCCCGTATC
*
2422197 CTTAGACTGGGAATGAACCCCGTAT
1 CTTACACTGGGAATGAACCCCGTAT
2422222 GCCTAAGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACCCCGTATC
Found at i:2422449 original size:899 final size:896
Alignment explanation
Indices: 2419523--2424974 Score: 7102
Period size: 898 Copynumber: 6.1 Consensus size: 896
2419513 CCCCGGGTTG
* * ** *
2419523 GACTGGGAATGAACTCCGTATGCCTAAGTCAACGCATGAAACGAGCGTGCAAGCGCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** ** ** ** *
2419588 CAGAGGGGCAGGATGCGAAAGCCAGGGATCGCCCGGGTCCCCCCTGCACGCTATCGATCCTACTA
66 CAGAGGGGTAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCCGATCCTACTG
** * * * *
2419653 CTGCAACCCTCAGTCTGATCTGATCTTAGACGGGGAATGAACTCCGTATGCCTAAGCCAATCGAT
131 CCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
*** * * * * * * *
2419718 GAAACCAGCGACCGGGCAGGCACTACACCGGCCGGAGAGGTGGGATGCGTAAGTCGTGGATTGAT
196 GAAACCAGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
** *
2419783 AGGGTGGTAGGTTTGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTT
261 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* * *
2419848 TTAAATTCACACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCGTTTTCT
326 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
2419913 ATTTTTCACTATTTTTGAAACTTTTTACAGTTCGAGATTTTTTTAAAATTTTTCCATAAGGATTT
391 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTT
* * *
2419978 TTGGACCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTA
456 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
2420043 AAAACTCGAAGTGTATAGGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTCAA
521 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
2420108 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
586 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
2420173 TGATAAGGGCTAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAC
651 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
2420238 AGCCCCCTGCCCCCTAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
716 ACCCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
* * * * * **
2420303 CGATGGTGCCCTGGGTA-AAAAAAAAATGTGGCACCCGTACATGCCC-GAACCCAATATGTGCAC
781 CGATGGTGCCC--CG-ACAAAAAAAAATGCGGCACCAGCACATGCCCAGAGCCCAGCATGTGCAC
** * ** **
2420366 CCACAACGATCGGTCAGGTCCGATCTTTGACTGGGAAAAAACTCCGTATGCTTA
843 CCACAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
* * * * * * * *
2420420 GACCGGGAATAAACTTCGCATGCCTAAGTAAACCCACGAAACGAGCGTGCAGGCGCTCAGTCAGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * ** *
2420485 CAGAGGGTTAGGATTCGTAAG-TCGGGGATCGGTCGGGTCCCCTCCTATGTGCTACCGATCCTAC
66 CAGAGGGGTAGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCC-CCTGCGTGCTGCCGATCCTAC
* *
2420549 TGCCACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTG
129 TGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * *
2420614 ACGAAACGAGCGAGTGGGCGGGCACTACGTCTGCCAGAGAGGCAGGATGCGTAAGCCATGGATCG
194 ACGAAACCAGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
* * * * *
2420679 ATATGGCGGTAGGTGTGTTTAGGCACATCTTCATATATCTGTCATGCCAATGCCATTTTTATGGC
259 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
* * * * * *
2420744 TTGTAAATTTAGACAATGGTCCTTTAAGCCTTGATGAGAAGTTTCGTGGCAAGACGACTCGTTTT
324 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
2420809 CTATTTTTCATGATTTGTGAAACTTTTTACGGTTCGGGATTTTTTAAAAAATTTTTT-AGAAGGA
389 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT-TAAAATTTTTTCAGAAGGA
2420873 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
453 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
2420938 CAAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTT
518 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
2421003 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
583 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
2421068 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGAACCAGCACCCAACGCACATCATGTGCG
648 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
2421133 CACACCCCCC-GCCCCCCAATC-ACTGGGACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCT
713 CACACCCCCCGGCCCCCCAATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * *
2421196 --G-C-CTCG-G----G-C--AAAAAAATGCGACACCAGCACATGCCC-GAGCCCAGCATGTGCA
777 CCGACGATGGTGCCCCGACAAAAAAAAATGCGGCACCAGCACATGCCCAGAGCCCAGCATGTGCA
* * * * * *
2421248 CCCGCAACCCTCGATCTGATCCGATCTTGCAAT-TGAATGAACTCCGTATGCTTA
842 CCCACAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
*
2421302 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
2421367 CAGAGGGGTAGGATGCACAAGCCGAGGATCGGTCGGGTTCCGCCTGCGTGCTGCTGATCCTACTG
66 CAGAGGGGTAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCCGATCCTACTG
* * * * *
2421432 TCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGAC
131 CCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * **
2421497 GAAACCAGCAGGCGAGCAGGCACTACGCCGGCCAGAGAGGCGGGACACGCAAGCCGTGGATCGAT
196 GAAACCAGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
*
2421562 AGGGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
261 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* *
2421627 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTGT
326 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
2421692 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTACAATTTTTTCAGAAGGAGTT
391 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTT
* * *
2421757 TTGGCCCCAAACTTGCTAGACGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAAATTCAGCT
456 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCT
* *
2421822 AAAAACTCGAAGTGTAAAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTA
520 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
2421887 ATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCAAGGT
585 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * * *
2421952 TTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAACACCCATTGCACATCACGTGCACA
650 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
2422017 CACCCTCCCGGCCCCCCAATCGTCGGAACACTAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC
715 CACCC-CCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
* * * **
2422082 GACGAAGGTGCCCCGAACAAAAAAAAATTACGGCACCATCACATG-CCAGAGCCCATTATGTGCA
779 GACGATGGTGCCCCG-ACAAAAAAAAA-TGCGGCACCAGCACATGCCCAGAGCCCAGCATGTGCA
* * * *
2422146 CCCGCAACCCTCGATCTGGTCCGATCTTACACTGGGAATGAACTTCGTATCCTTA
842 CCCACAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
* * ** *
2422201 GACTGGGAATGAACCCCGTATGCCTAAGTGAACCCATAAAACGAGCGTACGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * *
2422266 CAGACGGGCAAGATGCACAAGCTGGGGATCGGTCGAGTACCCCCTAG-GTGCTGCCGATCTTGCT
66 CAGAGGGGTAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCCT-GCGTGCTGCCGATCCTACT
* *
2422330 GCCACAACCCTCAATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
130 GCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* *
2422395 CGAAACGAGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
195 CGAAACCAGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
2422460 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
260 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
*
2422525 TGTAAATTCATACAATGGTCCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTT
325 TGTAAATTCATACAATGGTCCC-TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* ** *
2422590 GTATTTTTCTTGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTACAATTTTTTCAGAAGGAG
389 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAG
* *
2422655 TTTTGGCCCCAAACTTGCTAGACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGC
454 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
2422720 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
519 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
2422785 AATGGCTACTGGCAGCGAACCTGTAAAATCTCAAATG-TACTTTAAGGGCGTATGAGTTCTCGAG
584 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT-CTTTAAGGGGGTGTGAGTTCTCGAG
* * *
2422849 GTTTGATGAGGGTTAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAGATCATGTGCG
648 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
2422914 CACACCCCCCCGCCCCCCCAATCGTCGGAACCCCAATCCCGTCGGTCAGGTTCTCCGGCAATGCT
713 CACA-CCCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * *** * * * *
2422979 CCGACGATGGAGCCTCGGGTGAAAAAAAATACGACACCAGCACATGTCC-GAGCCCAACATGTGC
777 CCGACGATGGTGCC-CCGACAAAAAAAAATGCGGCACCAGCACATGCCCAGAGCCCAGCATGTGC
* * ** *
2423043 ACCAAAAACTTTTGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
841 ACCCACAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
* * ** * **
2423099 GACTGGGAATAAACTCCGTATGCCTAAGTCAACCTATAAAACGAGCGTGCGGGCACTCAGCCAAC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * ** *
2423164 C-GAGGGGTAAGATGCGCAAGTTGGGGATTGATC-GGACCCCTCCTGTGTGCTGTTGATCCTGCT
66 CAGAGGGGTAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCC-CCTGCGTGCTGCCGATCCTACT
** * * * * *
2423227 GCCATGACCCTCGGT-TCGATCTGATCTTAAACTGGGAATGAACTCTGTATGCCGAAGCCAACCG
130 GCCACAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * ** * * *
2423291 AC-AAAACAACTGGGTGGGTGGGCACTATGCCGGTAAGAGAGACGGGATGCACAAGCCGTGGATT
194 ACGAAACCAGC-GGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* *
2423355 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTATGCCAATGCCATTTTTATGG
258 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
* ** * *
2423420 CTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTTTTAGCAGGACGACTCGTTT
323 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
2423485 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTGTTTAAAATTTTTTTAGAAGGA
388 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
* * *
2423550 GTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCAG
453 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
2423614 CTAAAAAGTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
518 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
2423679 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGTTTTTTAAGGGTGTGTGAGTTCTTGAG
583 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
2423744 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CA--A-GCA---CACATCATGTGCG
648 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * **
2423802 GACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTC
713 CACACCCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* * *
2423867 CGATGATGGTGCCCCAAGCGAAAAAAAAATGCGGCACCAGCACATGCCCA-AGCCTAGCATGTGC
778 CGACGATGGTGCCCCGA-C-AAAAAAAAATGCGGCACCAGCACATGCCCAGAGCCCAGCATGTGC
**
2423931 ACCCACAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
841 ACCCACAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
* * *
2423987 GACTGGGAATGAACTCCTTATATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGTGCTCAGCCG
1 GACTGGGAATGAACTCC--GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
** * * *
2424052 GCCAGAGGGGTAGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCACTACATGCTGCCGATCCTG
64 GCCAGAGGGGTAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCC-CTGCGTGCTGCCGATCCTA
* ** * * * ** *
2424117 CTACTGCAACCTTCGGTCTAGTCCAATCTTCA-ACTGGGAATGAAC-CCGTATGCCCAAGCCAAC
128 CTGCCACAACCCTCAGTCTGGTCTGATCTT-AGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
2424180 CGACGAAACAAGCGGGTGGGCGGGCACTACGGCGGACAGAGAGGCGGGATGCGCAAGCCGTGGAT
192 CGACGAAACCAGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * * *
2424245 CAATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTATGCCATGCCAGTGCCATTTTTATG
257 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* ** * * *
2424310 GCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTTTTAGCAGGACGACTCATT
322 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
2424375 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTGTTTAAAATTTTTTTAGAAGG
387 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG
* * * *
2424440 AGTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTTA
452 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
2424504 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACC
517 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
2424569 TTAATGGCTACTGGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
582 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * * * *
2424633 GGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACTAGGACCAATCACGCATCATGTGC
647 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * *
2424698 GCACACCGACCCCGCCCCCCCAATCGCCGAAACCTCAATGCCATTGGTCAGGTTCTCCGACGATG
712 GCACACC--CCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
** * * * ** *
2424763 CTTTGGCGATAGTGCCCTGACCGAAAAAAATGTGGCACCAGCACATGCCCA-AGCCCAGCATGTG
775 CTCCGACGATGGTGCCCCGACAAAAAAAAATGCGGCACCAGCACATGCCCAGAGCCCAGCATGTG
* * * ** *
2424827 CACCCGCAACCCTCAGT-TCGGTCCGATCTTACATTGGGAATGAACTCTATATGATTA
840 CACCCACAACCCTCGGTCT-GGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
* * *
2424884 GATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* *
2424949 CAGAGTGGCAGGATGCGCAAGCTGGG
66 CAGAGGGGTAGGATGCGCAAGCTGGG
2424975 TGTCATGAGC
Statistics
Matches: 3993, Mismatches: 503, Indels: 120
0.87 0.11 0.03
Matches are distributed among these distances:
880 9 0.00
881 341 0.09
882 304 0.08
883 63 0.02
884 43 0.01
885 1 0.00
886 3 0.00
887 67 0.02
888 118 0.03
889 1 0.00
890 113 0.03
891 429 0.11
892 58 0.01
893 6 0.00
894 4 0.00
895 236 0.06
896 155 0.04
897 492 0.12
898 729 0.18
899 664 0.17
900 157 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGTAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCCGATCCTACTG
CCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAACCAGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
CGATGGTGCCCCGACAAAAAAAAATGCGGCACCAGCACATGCCCAGAGCCCAGCATGTGCACCCA
CAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
Found at i:2423098 original size:26 final size:26
Alignment explanation
Indices: 2423069--2423121 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2423059 CTGGTCCGAT
*
2423069 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
*
2423095 CTTAGACTGGGAATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
2423121 C
1 C
2423122 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:2433125 original size:26 final size:26
Alignment explanation
Indices: 2433096--2433146 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2433086 CCGATCTTAC
*
2433096 ACTGGGAATGAACTCCGTATGCCTAG
1 ACTGGGAATGAACTCCATATGCCTAG
2433122 ACTGGGAATGAACTCCATATGCCTA
1 ACTGGGAATGAACTCCATATGCCTA
2433147 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (26 bp):
ACTGGGAATGAACTCCATATGCCTAG
Found at i:2433430 original size:887 final size:886
Alignment explanation
Indices: 2431588--2437429 Score: 7500
Period size: 897 Copynumber: 6.6 Consensus size: 886
2431578 TCCATATGGT
* * * **
2431588 GCAAGCCATGGATCGATAGGGTGGTATGTGGGTTTAGGCCCAT-TTCATATTTCTACCCATGCCA
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTGCCATGCCA
*
2431652 ATGGCCA-TTTTATGGCTTGTAAATTCATATAATGGTCCCTTTAAGCCTTTCATTGTGAAGTTTC
65 AT-GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TTAAGCC-TTCA-TGTGAAGTTTC
* * *
2431716 ATGGGCAAGATGACTCGTTTTCTA-TTTTCACAATTTTTAAAACTTTTTACGGTTTAAGATTTTT
126 AT-GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTT
** *
2431780 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGCAAGACGTGATCCTTGTATTTTTTTTG
190 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
2431845 GAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG-CCATTTGAAAAAAG
255 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
** * * * * *
2431909 CATCCCCATTTCAAACACTTTAATTGCTACTGCCAGCAAACCTGTAAAATCTTAAATTCTCTTTA
320 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* **
2431974 AAGGGAAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
385 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
2432039 CCCATCGCACATCATGTGTGCACACCCTCCCCGCCCCCCCAATCATCGAAACCCCAATGCCGCCG
450 CCCATCGCACATCATGTGCGCACACCCCCCCCGCCCCCCCAATCATCGAAACCCCAATGCCGTCG
* * *
2432104 GTCAGGTTCTCCGGCGATGGTGCCCCGACCGAAAAAAAATGCGGCACCAGCACATGCCAGAGCCC
515 GTCAGGTTCTCCGGCGATGGTGCCCAG-GCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *** * * *
2432169 AGTATGTGCACCCGTAACCCTTGGTCTGGTCCAATCTTACACTGGGAATGAATTTCGTATGCTTA
579 AGCATGTGCACCTACAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTA
** * * * * *
2432234 GACTGGGAATGAACTCTTTATGCCTAAGTCAACCCACGAAATGAGCGTACGAGTGCTCAGCCGGC
644 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAC
* * * * *
2432299 CAGAGGGGCAGGATGTACAACTCGGGGATCGACC-GGCTCCCCCCCTATGGGCTACCGATCCTGC
709 CAGAGGGGCAGGATGCACAAGTCGGGGATCGACCAGG-T-CCCCCCTGTGTGCTATCGATCCTGC
* * * * * * * *
2432363 TACTACAATCCTCGGTCTGGTCTAATCATAGATTAGGAATGAACTCTGTATGCCTAAGCCAACTG
772 TACCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCG
*** * *
2432428 ACGAAACAAGCAACCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGC
837 ACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* * * *
2432478 ACAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTATG--GTGCC
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGCCATGCC
* *
2432541 AATGCCATTTTTATGGCTTGTTAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTTCATG
64 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * *
2432606 GCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTTA
129 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTTAA
* * * *
2432671 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTCGTATTTTTTTTGGCCT
194 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
2432736 GCAC-AAAAAATTCAGCTAAAAACTCGAAATGTACAGGATTTTGTGACCATTTGAAAAAAATGTC
259 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
*
2432800 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTTAAGG
324 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGG
*
2432865 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCC
388 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
** * * * * * *
2432930 ATTACACATCATGTGCGAACACCCCCCCCGCGCCCCCAATCACCGAAACCCCAATGCCTTTGATC
453 ATCGCACATCATGTGCGCACACCCCCCCCGCCCCCCCAATCATCGAAACCCCAATGCCGTCGGTC
* * * ** * *
2432995 AGGTTCTCCGGTGATGGTGCCCTAGGCTAAATAAAATAAGGCACCAGCAGATGCCCGAGCCAAGC
518 AGGTTCTCCGGCGATGGTGCCC-AGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * *
2433060 ATGTGCACCTGCAA-CCTTGATCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCCTAGAC
582 ATGTGCACCTACAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
2433124 TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGTGCTCAGCCGACCAG
647 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAG
* * * *
2433189 AGGGGCAAGATGCACAAGTCGGGGATCGGCCAGCTCCCTCCCTGTGTGCCATCGATCCTGCTACC
712 AGGGGCAGGATGCACAAGTCGGGGATCGACCAGGTCCC-CCCTGTGTGCTATCGATCCTGCTACC
* * *
2433254 GCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCAACGGACG
776 ACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACG
* * * * *
2433318 AAATGAA-CGGGCGGGTGGGCACTAAGCCGGACAAAGAGGCGGGATGC
840 AAA-CAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* * **
2433365 GTAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTTCATGCCAA
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAA
** **
2433430 TGAGATTTTTATGGCTTGTAAATTCATACAATGGTCATTTAAGCCTTCATGTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * *
2433495 AAGACGACTCATTTTCTATTTTTTATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAA
131 AAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTTAAAA
* * * *
2433560 TTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGAATACGTGATCCTTGTATATTTGTTGGCATGC
196 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
2433625 ACAAAACAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
261 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
2433690 CATTTCAGACATTTTAATTGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGG
326 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* **
2433755 TGTGAGTTCTCAAGGTTTGATGACAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
391 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
2433820 GCACATCATGTGCGCACA--CCCCCTGCACCCCCAATCGTCGGAACTCCAATGCCGTCGGTCAGG
456 GCACATCATGTGCGCACACCCCCCCCGCCCCCCCAATCATCGAAACCCCAATGCCGTCGGTCAGG
* * * *
2433883 TTCTCTGGCGATGGTGGCCC-GAG-AAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCAT
521 TTCTCCGGCGATGGT-GCCCAG-GCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
*
2433946 GTGCACCAACAACCCTCGGT-TCGGTCCAA---T---CT-----T--A---C--A--C-T--A--
584 GTGCACCTACAACCCTCGGTCT-GGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
2433985 -GGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTGTGGGCGCTCAGCTGGCCCA-
648 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-CGACCAG
* * * *
2434048 AAGGGCAGGATGCGCAAGTCGGGGATCGACTAGGTCCCCCCT-TACGTGCTGTCGATCCTGCTAC
712 AGGGGCAGGATGCACAAGTCGGGGATCGACCAGGTCCCCCCTGT--GTGCTATCGATCCTGCTAC
* * * *
2434112 CGCAACCCTCTG-CTTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
775 CACAACCCTCAGTC-CGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
** * *
2434176 GAAATGAGCTGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGC
839 GAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* * * * *
2434224 GTAAGCCATGGATCGATAGAGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAA
2434289 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * *
2434354 AAGACGAC-CTGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACTGTTCAAGATTTTTTAAAA
131 AAGACGACTC-GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTTAAA
* * * * *
2434418 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGATGTGATCTTTGTATTTTTTTTGGCCTG
195 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
2434483 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAACA-TGTC
260 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA-AGTGTC
*
2434547 CCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
324 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * * * *
2434612 GGTGTGGGTTCTTGAGTTTTCATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCA
389 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
2434677 TCGCACATCATGTGCGCACAACCCCCCCACCCCCCCAATCGTC-AGAACCCCAATGCCGTCGATC
454 TCGCACATCATGTGCGCACACCCCCCCCGCCCCCCCAATCATCGA-AACCCCAATGCCGTCGGTC
* * *
2434741 AGGTTCTCCGCGATGCTCCTATGATGGTACCCCGAGTG-AAAAAAATGCGGCACCAGCACATGCC
518 AGGTTCT-C-CG--G---C---GATGGTGCCCAG-GCGAAAAAAAATGCGGCACCAGCACATGCC
** ** * * *
2434805 CGAGCCCAGCATGTGCAATTGTAACCCTCGGTCCT-ATCCGATCTTACACTGGGAATGAACTCCA
572 CGAGCCCAGCATGTGCACCTACAACCCTCGGT-CTGGTCCAATCTTACACTGGGAATGAACTCCG
* *
2434869 TAGGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-GAAGCGTGTGGGCGC
636 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-AGCGTGCGGGCGC
** * * * * * **
2434933 TCA-CTTAGCCAGAGGGGCAGGATACGCAAGTCGGGGATCGATCGGGTCCCCCCCTGAGTGCTGC
700 TCAGCCGA-CCAGAGGGGCAGGATGCACAAGTCGGGGATCGACCAGGT-CCCCCCTGTGTGCTAT
* *
2434997 CGATCCTGCTACCACAACCCTC-GATCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCT
763 CGATCCTGCTACCACAACCCTCAG-TCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCT
** * * * * *
2435061 AAGCCAACCGATTAAACGAGCGGGTGGGTGGGCACTACGTCGGCCAGAGAGGCAGGATGC
827 AAGCCAACCGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* *
2435121 GCAAGCCGTGGATC-ATTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGTCA
1 GCAAGCCGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCA
2435185 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
65 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * * *
2435250 CAAGACGACTCGTTTTCTATTTTTCAGGACTTTCAAAACTTTTTACGGTT-AGGGATTTTTTTAA
130 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCA-AGATTTTTTTAA
* * *
2435314 AATTCTTTCAGAAGGAGTTTTGGCCTCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCAT
194 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
2435379 GCACAAAAAAATTCAGCTAAGAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
259 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
*
2435444 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGG
324 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * ** *
2435509 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGTGGGAAAATATAAAGGCCAAGTACCAGCACCCA
389 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
2435574 TCGCACATCATGTTCGCACA-CCCCCCCGACCCCCCAATCAGCGGAACCCCAATGCCGTCGGTCA
454 TCGCACATCATGTGCGCACACCCCCCCCGCCCCCCCAATCATCGAAACCCCAATGCCGTCGGTCA
* * * *
2435638 GGTTCTTCGGTGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGAACATGCT
519 --------GGT--T-CTCCGGCGATGGTG-CCCAGGCGAAAAAAAATGCGGCACCAGCACATGCC
* * * *
2435703 CGAGCCCAGCATGTGCACCTACAACCCTGGGTCCGGTCCAATCTTACTCTAGGAATGAACTCCGT
572 CGAGCCCAGCATGTGCACCTACAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGT
*
2435768 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTC
637 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* **
2435833 AGCC-AGCCAGAGGGGCAGGATGCACAAG-CTGGGGATCGGCCAGGTCCCCCCTACGTGCT-TCT
702 AGCCGA-CCAGAGGGGCAGGATGCACAAGTC-GGGGATCGACCAGGTCCCCCCTGTGTGCTATC-
* * * * * *
2435895 GATCTTGCTGCCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCGTAA
764 GATCCTGCTACCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAA
* * *
2435960 GCCAACCGACGAAACAAGCGGGCGGGCGGGCATTACGCTGGGCAGAGAGGCGGGATGC
829 GCCAACCGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
** *
2436018 GCAAGCCGTGGATCGATAGGGTGGTATCTGGGTTTAGGCACATCTTCATATTTTTGCCATGTCAA
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAA
2436083 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * ***
2436148 AAGATGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTTGGGA-TTTTTTAAAA
131 AAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTTAAAA
* * *
2436212 CTTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTTATCCTTGTATTTTTATTGGCATG
196 -TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
2436277 CACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
260 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
2436341 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
325 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
2436406 GTGTGAGTTCTCGAGGTTTGATGAGGGATA-AGGGTCAATAGAAGGGCCAAGTACCAGCACCCAT
390 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
2436470 CACACATCATGTGCGCATA-CCCCCCCGCCCCCCCAATCGTCGAAACCCCAATGCCGCCGGTCAG
455 CGCACATCATGTGCGCACACCCCCCCCGCCCCCCCAATCATCGAAACCCCAATGCCGTCGGTCAG
* * **
2436534 ATTCTCCAGCGATGCTCCGAAAATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAAAACATGCCC
520 GTTCT-C--CG--G---CG---ATGGTG-CCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCC
* * *
2436599 AAGCCTAGCATGTGCACCCACAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTA
573 GAGCCCAGCATGTGCACCTACAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTA
* ** * * * *
2436664 TGCTTAGACTGGAAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGACGCTCA
638 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** **
2436729 GCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTC-GAGTCCCCCCTGCATGCTA-CTGA
703 GCCGACCAGAGGGGCAGGATGCACAAGTCGGGGATCGACCAG-GTCCCCCCTGTGTGCTATC-GA
* * * * **
2436792 TCTTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGC
766 TCCTGCTACCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
* ** *
2436857 CAACCGACGAAACAAGCGGACGGGCGGGCACTACGTAGGCCAGAGAGGCGGGATGT
831 CAACCGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* *
2436913 GCAAGCTGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAA
1 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAA
*
2436978 TGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATTTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* *
2437042 AAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAA
131 AAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTTAAAA
* *
2437107 TTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
196 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * * *
2437172 ATAAAAATATTCGGCTAAAAACTCGAAGTGGACAGGATTTTGTGACCGTTTGAAAAAAGTGTCCC
261 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
2437237 CATTTCAGATAGTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGG
326 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * **
2437302 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAATATAAGGCCCAAGTACTGGCACCCATC
391 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
2437367 GCACATCATGTGCGCACA--CCCCCCGTCCCCCTCAATCACCGAAACCCCAATGCTGTCGGTCAG
456 GCACATCATGTGCGCACACCCCCCCCG-CCCCCCCAATCATCGAAACCCCAATGCCGTCGGTCAG
2437430 AACGCCCGCC
Statistics
Matches: 4351, Mismatches: 479, Indels: 238
0.86 0.09 0.05
Matches are distributed among these distances:
857 1 0.00
858 7 0.00
859 616 0.14
860 6 0.00
861 42 0.01
862 2 0.00
863 1 0.00
864 1 0.00
865 2 0.00
867 1 0.00
868 1 0.00
869 1 0.00
870 3 0.00
871 64 0.01
872 1 0.00
873 1 0.00
874 2 0.00
877 2 0.00
879 2 0.00
882 2 0.00
884 48 0.01
885 63 0.01
886 68 0.02
887 741 0.17
888 301 0.07
889 14 0.00
890 74 0.02
891 12 0.00
892 3 0.00
894 184 0.04
895 618 0.14
896 273 0.06
897 997 0.23
898 184 0.04
899 2 0.00
900 1 0.00
903 1 0.00
904 3 0.00
905 2 0.00
906 2 0.00
907 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (886 bp):
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTTAAAA
TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCCCGCCCCCCCAATCATCGAAACCCCAATGCCGTCGGTCAGG
TTCTCCGGCGATGGTGCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCACCTACAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGG
GCAGGATGCACAAGTCGGGGATCGACCAGGTCCCCCCTGTGTGCTATCGATCCTGCTACCACAAC
CCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAA
GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
Found at i:2435774 original size:26 final size:26
Alignment explanation
Indices: 2435745--2435797 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2435735 CCGGTCCAAT
*
2435745 CTTACTCTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
2435771 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
2435797 C
1 C
2435798 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:2441455 original size:16 final size:16
Alignment explanation
Indices: 2441436--2441488 Score: 61
Period size: 17 Copynumber: 3.2 Consensus size: 16
2441426 TAAGTTTTTA
2441436 AAAACCCCTAAAATCC
1 AAAACCCCTAAAATCC
*
2441452 AAAATCCCCTAAAATTC
1 AAAA-CCCCTAAAATCC
**
2441469 AAAACCTTTTAAAATCC
1 AAAACC-CCTAAAATCC
2441486 AAA
1 AAA
2441489 GTCCTAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
16 6 0.19
17 25 0.81
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAACCCCTAAAATCC
Found at i:2445000 original size:26 final size:25
Alignment explanation
Indices: 2444963--2445014 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
2444953 GTTGGCTTAG
2444963 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
* *
2444988 GCATACAGAGTTCATTGCCAGTGTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
2445014 G
1 G
2445015 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:2445214 original size:12 final size:12
Alignment explanation
Indices: 2445197--2445227 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
2445187 GTGCTGGTAC
2445197 TTGGCCCTTATA
1 TTGGCCCTTATA
2445209 TTGGCCCTTATA
1 TTGGCCCTTATA
2445221 TTGGCCC
1 TTGGCCC
2445228 CCTATCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:2445898 original size:26 final size:26
Alignment explanation
Indices: 2445868--2445920 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2445858 GTTGACTTAG
2445868 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2445894 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2445920 G
1 G
2445921 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2449590 original size:898 final size:896
Alignment explanation
Indices: 2442449--2450669 Score: 9322
Period size: 896 Copynumber: 9.2 Consensus size: 896
2442439 CGTTACGACA
* * *
2442449 ATGTGCGATGGGTGCTGGTACTT-GCCCTTCTATTGGCCCCTTATCCCTCATCAAACCTCAAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
2442513 CTCACACCCCCATAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
2442578 GAAATGGGGACACTTTTTTCAAATCGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
131 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* *
2442643 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTCTG
196 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* * *
2442708 AAAAAATTCTAAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACCAGT
261 AAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
2442773 CGTCTTGCCATGAAACTTCACATGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
326 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
2442838 ATGGCATTGGCATGGCAGAAATATGACGATCTGCCTAAACCCTCCTACCACCCTATCGATCCATG
391 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * * *
2442903 GCTTGCGTATCCCGCCTCTCTGACGGGCGTAATGCTCG-CCGATCCGCCCATTTCGTCGGTTGGC
456 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCCGCTCGTTTCGTCGGTTGGC
* * ** * **
2442967 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGATT-CTGATAGCAGGAT
520 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGC-GGCAGCAGGAT
** * * * *
2443031 CGACAGCACGCAGACGGGGACCCAATCGATCCCTGGCTTGCGCATCTTGCCCCTCTGGCCGACTG
584 CGACAGCACGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * * ** * * *
2443096 AGCGTCTGCACGCTCGTTTCATGGGTTCACTTAGGCATATGGAGCTCATTCCGAGTCTAGGCATA
649 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
* * * ** * *
2443161 CGGAGTTCATTCCTAGTGTAAGATCGGACCAGACAGAGGGTTGCAGGAGCACATGCTGGGCTTGG
714 CGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGG
* * * * * * *
2443226 GTATGTACTGGTGCCATATTTTTTTTTCCCCGAGGCACCATCATCGGAGCATCACCGGAGAACCT
779 GCATGTGCTGGTGCCATA-TTTTTTTTCGCCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCT
** * * *
2443291 GATTGCCGGCATTGGGGATTTCGACGATTAGGGGGC-GGGGGGTGTGCGTACATG
843 GACCGACGGCATTGGGG-TTTCGACGATTGGGGGGCGGGGGGGTGTGCGCACATG
2443345 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
2443410 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
2443475 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA-ACCATCGAGTTTTTAGTTGAATG
131 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA-CTTCGAGTTTTTAGCTGAATT
* * *
2443539 TTTTTATGCATGCCAACAAAAATACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
195 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* **
2443604 GAAAAAAGTTTT-AAAAAAT-TTGGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
260 GAAAAAA-TTTTAAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * * **
2443667 AGTCATCTTGCTATGAAACTTCACATGAAGGCTGAAGGGACCATTGTACAAATTTACAAGCCATA
323 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
2443732 AAAATGGCATTGGAATGGTAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCC
388 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * * *
2443797 ACGGCTTACGCATCCCGTCTCTCTGGCTGGCGTAGTGGCCGCTCGTCCGCTCGTTTTGTTGGTTG
453 ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * *
2443862 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGTAACAGGA
518 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGA
* * * * * * *
2443927 TCGGCAACACGTAGAGGAGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGCT
583 TCGACAGCACGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
* * * ** * * * * *
2443992 GAACGCCCACACACTAATTTCGTGGGTTGACTTAGGCATACAAAATTCAGTCCTAGTCTAAGCAT
648 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
* * * * * * * *
2444057 ATGGAGTTCATTCCCGGTGCAAGATCAGACTGGATC-ACGGGTTGTAGGTGTACATGCTGGGCTC
713 ACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGA-GGGTTGTGGGTGCACATGCTGGGCTC
* * * *
2444121 AGGCATGTGCTGGTGCTGCA-ATTTTTTTT-GCCTAGGGCACCATCGTCGGAGCATCGCCGGAAT
777 GGGCATGTGCTGGTGC--CATATTTTTTTTCGCC-GGGGCACCATCGTCGAAGCATCGCCGG-AG
* * * * * * *
2444184 AACCTGATC-AGCGGCATTGGGAATTCCGGCGATT--AGGG-GTGGGGGTGTGCGTACATG
838 AACCTGACCGA-CGGCATTGGG-GTTTCGACGATTGGGGGGCGGGGGGGTGTGCGCACATG
*
2444241 ATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
2444306 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCT
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
**
2444371 GAAATGGGGACACTTTTTTCAAATCATCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
131 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
2444436 TTTTGTACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAATTCCTTCTG
196 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* * *
2444501 AAAAAATTTTTAAAAAAT-CTGGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACAAG
261 AAAAAATTTTAAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
2444565 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACACGCCATAAA
325 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * ** * *
2444630 AATGGCATTGGCATGGTAGAAATATGAAGAAGTGCCTAAGGCCACCTACCACCCTATCAATCCAT
390 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * * *
2444695 GGCTTACACATCCCGCCTCTCTGGCCAGCGCAGTACTCGCCCGTCCACTCGTTTCGTCGGTTGGC
455 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** * *
2444760 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTG-GGACAGTAGGAT
520 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGG-CAGCAGGAT
2444824 CAACAGACTGATGATTGCAACAGCAGGATCAACAGCACATAGAAGGGGACCCGATCGATCTCCTG
584 ---C-GAC-----A--GC-AC-GCA-G-------G------G--GGGGACCCGATCGA-----T-
* * * * * * * * *
2444889 CCGATCCCTGGCTTGCACATCCTGCCCTTCTAGCCGACTGAGCGCTCGGACACTCATTTCGTGGG
614 -C---CCC-GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * *
2444954 TTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTGCCAGTGTAAGATC
674 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * * * * *
2445018 GAACTGGACCAAGGGTTGTGGGTGCAGATGCTAGGCTCGGGCATGTGCTGGTGTCGCAT-TTGTT
739 GGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-CATATTTTT
** * * *
2445082 TTTCGTCCGGGGCACCATCACCGAAGCATCGCCAGAGAACCTGACCGATGGCATTGGGGTTTCGG
802 TTTCG-CCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGA
* * * *
2445147 CGGTT-GGGGGC-GAGGGGTGTGCACACATA
866 CGATTGGGGGGCGGGGGGGTGTGCGCACATG
*
2445176 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 ATGTGCGATGGGTGCTGGTA-------C-----TTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * ** *
2445241 AAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTACTATCAGTAGCA
54 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
2445306 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTTCG-GCT
119 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC-TTCGAGTT
* * *
2445370 TTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTAGGTCC
183 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
2445435 AAAACTCCTTCTGAAAAAATTTAAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT-ATTAAAA
248 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCA-TGAAA
2445499 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
312 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
* * *
2445564 TACAAGCCCTAAAAATGGCATTGGCATGGCAGAAATAAGAAGATGTGCCTAAACCCACTTACCAC
377 TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
2445629 CCTATCGATCCACGGCTTGCGCATCCCGCCTATCTGGCCAGCGTAGTGCCCGCCTGCCCGCTCAT
442 CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGT
* ** * * * * * ** * ** ** *
2445694 TTCGTCGGTCGATTTAGGCATACGAAATTCATTCCCAATCCAGGATTGGATCAAACTGAGAGTTG
507 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTG
* * * * * * *
2445759 TGGCAGTAGGATCGGCAGCACGTA-GGAGGGACCC-AGCTGATCCCCGTCTTGCGCATCCTGCCC
572 CGGCAGCAGGATCGACAGCACGCAGGGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCTGCCC
* * * *
2445822 CTCT-GCCGACTGAGCGCCTGTACGCACGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
636 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
* * * **
2445886 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGATCGGACTGAGGGTTACGGGTGCAC
701 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCAC
* * * **
2445951 ATGCTAGGCTAGGGCATGTGCTGCTGCCATATTTTTTTTTTCGCTTAGGGCACCA---TC---G-
766 ATGCTGGGCTCGGGCATGTGCTGGTGCCATA--TTTTTTTTCGC-CGGGGCACCATCGTCGAAGC
** * *
2446009 -T---CGGAGAACCTGACCGACGGCATTGGGGTTTCGGTGATTGAGGGGCGGGGGGGTGTACGCA
828 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGCGGGGGGGTGTGCGCA
2446070 CATG
893 CATG
* * * * *
2446074 ATATGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCACCTTATCCCTCATCAAACCTCTAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
2446139 CTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGTCATTAAAGTGTCT
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* ** *
2446204 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTACACACTTCGAGTTTTTAGCTGAATTA
131 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* *
2446269 TTTTGTGCATGCAAAAAAACTACAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAA
196 TTTTGTGCATGC-------C-A-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
2446334 CTCCTTCTGAAAAAATTTTAAAAAAAT-CTCGAACCGT-AAAAGTTTCCAAAATCATGAAAAATA
252 CTCCTTCTGAAAAAATTTTAAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* *
2446397 GAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGTTTAAGGGACCATTGTATGAATTTACA
316 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
2446462 AGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTA
381 AGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
2446527 TCGATCCACGGCATGCGCATCCTGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGCTCGTTTTG
446 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCG
* * * * * * *
2446592 TCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTTTGAGATCAAACCGGACCAAGGGTTACGGT
511 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGC
** * * * * * **
2446657 AGCAGGATCGGTAGCACGCA-GGGGGTAACCGACCGATCCCTGGATTATGCATCCTGCCCCTCTG
576 AGCAGGATCGACAGCACGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTG
* * * *
2446721 GCTGGCTGAGGGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTC
641 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
* * * ** * * * * **
2446786 TAAGCATGCGAAGTTTATTAACAGTGTAAAATTGGACCGGACCAAGAGTTACGGGTGCACATGCT
706 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCT
* *
2446851 GGGCTCGGGCATGTGCTGGTACCATATTTTTTTTCGCCTCGGGCACCA---TC--A-C-T----G
771 GGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCC-GGGGCACCATCGTCGAAGCATCGCCG
* ** * * *
2446905 GAGAACCTGACCGGCAACATTGGGGTTCCGGCGATTGGGGGAC-GGGGGGTGTGCGCACATG
835 GAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGCGGGGGGGTGTGCGCACATG
**
2446966 ATGTGCGATGGGTGCTGGTACTTGTTCCTTATATTGGCCCCCTATCCCTCATCAAACCTTC-AGA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGA
* *
2447030 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAATGTGTC
65 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
2447095 TGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCCTATACACTTTGAGTTTTTAGCTGAATT
130 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
*
2447160 TTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACC--------GGCCAAAACTCCTTCT
195 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * *
2447217 GAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAG
260 GAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
2447282 TCGTCTTGCCATGAAACTTCAAATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAA
325 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* ** *
2447347 AATGGCATTGGCACGATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
390 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
2447412 GGCTTGCGCATCTCGCCTCTCTAGCCGGCATAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGC
455 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
2447477 GTTCGGCATAGCGGACGTTCATT-CCAGACTAAGAT--GACCGAACCGAA-GGTTGTGTCAGTA-
520 -TTAGGCATA-CGGA-GTTCATTCCCAGTCTAAGATCAGACCGGACC-AAGGGTTGCGGCAGCAG
* ** * * ** *
2447537 GATC-AGCAGCA--CAAGAAGGGA-CCGATCAAT-CCCAGCTT--TTATCCTGCCCCTCTGGTC-
581 GATCGA-CAGCACGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * * * * *
2447594 GCTAAG-ACCTGCACG-T-GGTTCGT-GG-TGACTTAGGAATACGGCAGTTCATTCCCA--CTAA
645 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* * * * * *
2447652 GCAT-CGGAGTTCATTCCCAGTGTAAGATCAGA-CGGGCCAATGG-T-CGGGTGCACATGTCTAG
709 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATG-CTGG
* * * * * *
2447713 GCTCGGGCATGGGCTGGTGCC-----CTTTCTCGCC--CGCACCATC-ACGGAGCATC-CTC-G-
773 GCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCGGGGCACCATCGTCGAAGCATCGC-CGGA
* * * *
2447767 GAACCT-ATCG--TGCATTGGGGTTTGGATGATTGGGGGGC---GGGGTGTG-GCACATG
837 GAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGCGGGGGGGTGTGCGCACATG
* * *
2447820 A-GTGTGATGGGTGCTGGTACTTGGCCCTCATATTGGTCCCCTATCCCTCATCAAACCT-GAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
2447883 CTCACACCCCCTTAAAGAGCCA-TTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGCC
66 CTCACACCCCCTTAAAGAG-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
2447946 TGAAATGGGGACA-TTGTTTTCAAATGGTCACAAAATCCTGTACACTTCTAGTTTTTAGCTAAAT
130 TGAAATGGGGACACTT-TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT
*
2448010 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTC
194 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
2448075 TGAAAAGATTTTAAGAAAATCCCGAATCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGA
259 TGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
2448140 GTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
324 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * *
2448205 AAATGGCATTGGCACAGCAGAAAAATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
389 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * * * * * *
2448270 CGGCTTGCGTATCCCATCTTTTTGGTCGGCATAGTGCCCGCCCGCCCTCTCGTTTTGTCGGTTGG
454 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** * *
2448335 CTTAGGCATACGGAGTTC--TCCCAATCTAAGATTGGACTGGACCAAGGGTTGTGGCAGCAGGAT
519 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGAT
* * * * * * * * *
2448398 CGATAGCATGAAGGGGGGGACCCGGTCGATCCCCAGCTTGCTCATCTTGCCCCTCTGGCTGGTTG
584 CGACAGCACGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * * * * *
2448463 AGAGCCCACACGCTCGTTTCATGGGTTGACTTAGCCATACGGAGTTCATTCCTAGTCTAAGCATG
649 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
** * *
2448528 CGGAGTTCATTCCCAGTGTAAGATCGGACCAAACCGAGGGTTGTGGGTGCACATGTTTGGCTCGG
714 CGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGG
* * * ** * *
2448593 GCATGTGCTGGTGCCGTATTTTTTCTCACCCGAAGCACCATCGTCGGAA-CATCACTGGAGAACC
779 GCATGTGCTGGTGCCATATTTTTTTTC-GCCGGGGCACCATCGTC-GAAGCATCGCCGGAGAACC
** *
2448657 TGACCGGTGGCATTGGGGTTTCGATGATTGGGGGGCGGGGAGGGTGTGCGCACATG
842 TGACCGACGGCATTGGGGTTTCGACGATTGGGGGGCGGGG-GGGTGTGCGCACATG
* *
2448713 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
2448778 CTCACACCCCCTTCAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTTT
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
2448843 GAAATGTGGACACTTTTTTCAAATGGTCACAAATTCATGTACACTTCGAGTTTTTAGCTGAATTT
131 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* *
2448908 TTTTGTGCATGCCATA-AAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACGCCTTCT
196 TTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
** * * * *
2448972 GAGGAAATTTTAAAAAAATCCTAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAG
260 GAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
2449037 TCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
2449102 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACGTACCACTCTATCGATCCAC
390 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ** * *
2449167 GGCATGCAAATCTCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
455 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** *
2449232 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCAACAGCAAGATC
520 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATC
* * * * * *
2449297 GACAGCATGCAGGGGGGGACTCGATCGATCCCCGGCTTACGCATCGTGCCCGTCTGGCCGGTTGA
585 GACAGCACGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * *
2449362 GCGCCCGTACGCTCGTTTCCTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATAC
650 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
* * *
2449427 GGA-TTCATTCCCAGTGTAAAATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAG
715 GGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGGG
* *
2449491 CATGTGCTGGTGCCATATTTTTTTTCGCCGTGGGCACCATCGTCGAAGCATCGTCGGAGAACTTG
780 CATGTGCTGGTGCCATATTTTTTTTCGCCG-GGGCACCATCGTCGAAGCATCGCCGGAGAACCTG
* * * * ** *
2449556 ATCGACGCCATTGAGGTTCCGACGATTGGGGGGGCGAATGGGGTGTGCGCACATA
844 ACCGACGGCATTGGGGTTTCGACGATT-GGGGGGCG-GGGGGGTGTGCGCACATG
*
2449611 AAGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
2449676 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
66 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
2449741 GAAATGGAGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTACCTGAATTT
131 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
2449806 TTTTGTGCATGCCAACAAAAATTCAAGGATCACGGCTACCAAGTTTGGGGCAAAAACTCCTTCTA
196 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* *
2449871 AAAAAATTTTAAAAAAAT-CTCGAACCATAAAAAGTTT-AGAAAATCGTGAAAAATAGAAAACGA
261 AAAAAATTTTAAAAAAATCCT-GAACCGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGA
2449934 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
324 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * *
2449999 AAATGGAATTGGCATGGCAAAAAAATGAAGATGTGCCTAAACCCACCTACCACGCTACCGATCCA
389 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
2450064 CGGCTTGCGCATCTCGCCTCTCTGGCC-GCGTA-TGCCC-ACCGCCCG-TCATATTCATCGCGTT
454 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGT-TTCGTCG-GTT
* ** * * * *
2450125 CGCTTA-GCAT-CGG-GTTCCATTCCCAG-CTTAAGATTGGACTGGACCAAGGGTTGTGGTAGTA
517 GGCTTAGGCATACGGAGTT-CATTCCCAGTC-TAAGATCAGACCGGACCAAGGGTTGCGGCAGCA
* * ** * * * *
2450186 GGATCTG-CAGCATG-AAGGGGGGACCCGGCCGATCCCCAGCTTGCTCATCCTGCCCATCTGGTC
580 GGATC-GACAGCACGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * * * * *
2450249 GGCTAGATCGCCTGCACGCTCTTTTCAATGGGTTTGAGC-CAGCCCATACGGAGTTCATTCCCAG
644 GGCT-GAGCGCCCGCACGCTCGTTTC-ATGGG-TTGA-CTTAG-GCATACAGAGTTCATTCCCAG
* * * * * *
2450313 GCTAAAGCTTACGAAGTTCATTCCAAGTGTAA-ATC--ACC-GAACG-GGAGTTGTGGCTGCAAC
704 TCT-AAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGG-GTTGTGGGTGC-AC
* * * * ** *
2450373 CTGCTTGGCT-GGGGA-GTGCGTGGTGCCACA-TTTTCATCAGCCCGACGGCACCATCGGTCGGA
766 ATGCTGGGCTCGGGCATGTGC-TGGTGCCATATTTTTTTTC-G-CCG-GGGCACCATC-GTC-GA
* * * * * * * *
2450435 A-CGTCACCGGAAGAACTTCACCGAC-GCATTGGGGTTCCG-TGATTGGGGGG-GGAGTGGTGTG
825 AGCATCGCCGG-AGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGCGGGGGGGTGTG
*
2450496 CGAACCATG
889 CGCA-CATG
* * *
2450505 ATGTGGCGAT-GTTGCTCGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
1 ATGT-GCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
2450569 AACTCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
64 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
2450634 -TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
129 CT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAA
2450670 ATGGCATTGG
Statistics
Matches: 6290, Mismatches: 813, Indels: 445
0.83 0.11 0.06
Matches are distributed among these distances:
850 2 0.00
851 122 0.02
852 43 0.01
853 53 0.01
854 10 0.00
855 26 0.00
856 7 0.00
857 44 0.01
858 17 0.00
859 264 0.04
860 35 0.01
861 16 0.00
862 29 0.00
863 8 0.00
864 28 0.00
865 18 0.00
866 12 0.00
867 2 0.00
868 12 0.00
869 18 0.00
870 29 0.00
871 8 0.00
872 32 0.01
873 15 0.00
874 27 0.00
875 61 0.01
876 225 0.04
877 10 0.00
878 11 0.00
879 13 0.00
880 2 0.00
882 8 0.00
883 30 0.00
884 5 0.00
885 11 0.00
886 171 0.03
888 26 0.00
891 2 0.00
892 212 0.03
893 125 0.02
894 439 0.07
895 447 0.07
896 1046 0.17
897 870 0.14
898 707 0.11
899 20 0.00
900 2 0.00
901 1 0.00
904 4 0.00
905 42 0.01
906 109 0.02
907 21 0.00
908 2 0.00
909 2 0.00
910 2 0.00
912 1 0.00
916 2 0.00
917 9 0.00
919 1 0.00
923 1 0.00
925 14 0.00
930 1 0.00
932 1 0.00
934 11 0.00
935 150 0.02
936 87 0.01
937 2 0.00
938 1 0.00
942 1 0.00
943 2 0.00
944 1 0.00
946 1 0.00
947 494 0.08
948 7 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (896 bp):
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
AAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCG
ACAGCACGCAGGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCATATTTTTTTTCGCCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGAC
CGACGGCATTGGGGTTTCGACGATTGGGGGGCGGGGGGGTGTGCGCACATG
Found at i:2451899 original size:26 final size:26
Alignment explanation
Indices: 2451847--2451899 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2451837 GTTGACCTAG
*
2451847 GCATACGGAGGTCATTCCCCGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
* *
2451873 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
2451899 G
1 G
2451900 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:2453169 original size:902 final size:893
Alignment explanation
Indices: 2450666--2455278 Score: 5898
Period size: 870 Copynumber: 5.2 Consensus size: 893
2450656 AAATGGTCAC
*
2450666 AAAAATGGCATTGGCATGGCAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
1 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
2450731 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGGCCGCTCGTTTTGTCGGTT
66 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCC-GCCGCTCGTTTCGTCGGTT
* * * * * * *
2450796 GGCTTAGGCATACGGAGTTCATTCCCAATGTAAGATCGGCCCGGACTGAGGGTTGTGGCAGCAAG
130 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGTAGG
* * * * *
2450861 ATCGGCAACACGTAGGTGGGGACACGGTCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGAT
195 ATCGGCAGCACGCAGG-GGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGAC
* * * * *
2450926 TGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGCCATATGAAGTTCATTCCCAGTCTAAGCA
259 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
2450991 TACAGAGTTCCTTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACAT-CTTGGGCT
324 TACGGAGTTCATTCCCAGTGTAA-ATCAGACCAGATCAAGGGTTGCGGGTGCACATGC-TGGGCT
* **** * * *
2451055 CAGGCATGTGCTGGTGCCGCATTTTTTAGAAAGCCTGGGG-ACCATCGCCGAAGCATCATCGGAG
387 CGGGCATGTGCTGGTG-CGCATTTTTT--TTTCCCTGGGGCACCATCACCGGAGCATCACCGGAG
* * ** *
2451119 AACCTGACCGACTGCATTGGGGTTCCGACGATTGGTGGGGTGGGGGGGTGTGCGCACATGATGTG
449 AACCTGACCGACGGCATTAGGGTTCCGGTGATTGG-GGGGCGGGGGGGTGTGCGCACATGATGTG
* *
2451184 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCAC
513 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2451249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTCAAAT
578 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * *
2451314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAAATTTTTTT
643 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG-AATTTTTTT
* * * *
2451379 -TGCATGCCAAAAAAAAAACAAGGATCATGTCTACCAAGT-TCGGGGCCAAAAATTCTTCTAAAA
707 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGT-GGGGCCAAAAATCCTTCTGAAA
*
2451442 AAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
771 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
2451507 CTTGCCATGAAACATCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGTCAT
836 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * * * * *
2451565 AAAAATGGAATTGGCGTGGCAAAAAAATGAAGATGTGCCTAAACTCACCTACCACGCTACCGATC
1 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
** *
2451630 CATTGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG-C-C-CG---C-TC-GTT-
66 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCGCTCGTTTCGTCGGTTG
* * * * * * *
2451686 --TT-GTCATACGGAGTTCATTTCCAGTCTAAGATCA-AACTGAATTGAGGGTTGTGACATTAGG
131 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGCAGTAGG
** * * * * * *
2451747 ATCGATAGCATGCAGGGGGCGACCAGATCGATCCTCGACTTACGCATCCTGGCCCTCTGGCTGAC
195 ATCGGCAGCACGCAGGGGG-GACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGAC
* * * * * *
2451812 TGAG-AGCCGCACGTTCGTTTCATGGGTTGACCTAGGCATACGGAGGTCATTCCCCGTCTAAGCA
259 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
2451876 TACGGAGTTCATTCCCAGTGTAAGATCAGACCAGAGCGAGGGATGCGGGTGCACATGCTGGGCTC
324 TACGGAGTTCATTCCCAGTGTAA-ATCAGACCAGATCAAGGGTTGCGGGTGCACATGCTGGGCTC
* * *
2451941 GGCCATGTGCTGGTGTCGCA-TTTTTCTTCGCCCGGGGCACCATCACCGGAGCATCACCGGAGAA
388 GGGCATGTGCTGGTG-CGCATTTTTTTTTC-CCTGGGGCACCATCACCGGAGCATCACCGGAGAA
* *
2452005 CCTGACCGGCGGCATT-GCGGTTCCGGTGATTTGGGGGGC-GGGGGGTGTGCGCACATCATGTGC
451 CCTGACCGACGGCATTAG-GGTTCCGGTGA-TTGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* *
2452068 GATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACA
514 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2452133 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATG
579 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* *
2452198 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
644 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** *
2452263 GCATGCCAAAAAAAATTCAAGGATTACGTCTACCAAGTGTGGATCCAAAACTCCTTCTGAAAAAA
709 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAAA
* * *
2452328 TTTTAAAAAAATCCCGAGCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
774 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
2452393 ACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCGT
839 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
2452448 AAAAATGGAATTGGCATGGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
1 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * *
2452513 CACGGCTTGTGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCACTCGCTCGGTTCGTCAGTT
66 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGC-CGCTCGTTTCGTCGGTT
* * * * *
2452578 GGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGTAGG
130 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGTAGG
* * * *
2452643 ATCGGCAGCACGCAGGGGGGAACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGC
195 ATCGGCAGCACGCAGGGGGG-ACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGAC
** * * * * *
2452708 TGAGCACCCGTGCGCTTGTTTCATGGGTTGGCTTCGACATACGGAG-TCATTCCCAGTCTAAGCA
259 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
*** *
2452772 TACGGAGTTCATTCCCAGTGTCAAATCAGATGGGATCAAGGGTTACGGGTGCACATGCTGGGCTC
324 TACGGAGTTCATTCCCAGTGT-AAATCAGACCAGATCAAGGGTTGCGGGTGCACATGCTGGGCTC
* ** * *
2452837 GGGCATGTGCTGCTGTTCATTTTTTTTTTCACCTGGGGTACCATCACCGGAGCATCGCCGGAGAA
388 GGGCATGTGCTGGTGCGCA-TTTTTTTTTC-CCTGGGGCACCATCACCGGAGCATCACCGGAGAA
* * *
2452902 CCTGATCGGCTTG-ATTAGGGTTCCGGTGATTAGGGGGGCGGGGGAGATCGTGTGCGCACATGAT
451 CCTGACCGAC-GGCATTAGGGTTCCGGTGATT-GGGGGGCGGGGG-G---GTGTGCGCACATGAT
**
2452966 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTGTATCCCTCATCAAACCTCGAGAACT
510 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
2453031 CACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
575 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
*
2453096 AATGGGGACACTTTTTTCAAAGGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
640 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
2453161 TTGTGCATGCCAAAAAAAAATACAAGGATCATGTCTACGAAGTGTGGGGCC-AAAATCCTTCTAA
705 TTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCCTTCTGA
* * * * *
2453225 AAAAATTTTACAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACTAGTA
769 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
2453290 GTCTTTCCATGAAACTTCACATGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCAT
834 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
2453350 AAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATC
1 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * **
2453415 CATGGCTTGCACATCTCGCTTCTTTGGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
66 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCG-CCGCTCGTTTCGTCGGTT
* * *** *
2453480 GGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTACAGTAGTAGG
130 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGTAGG
* * * * * * * * * *
2453545 ATCAGTAGCACACTGGGGGGGACCCAACCGATCCTCAGCTTGCGTATCCTG-CCCTCCGGTCGAC
195 ATCGGCAGCACGC-AGGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGAC
* *
2453609 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC---C--AGCA
259 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
2453668 TA---AG---A-T--C-G-G---ATCAG-CC---T-GAGGGTTACGGGTGCACATGCTGGGCTCG
324 TACGGAGTTCATTCCCAGTGTAAATCAGACCAGATCAAGGGTTGCGGGTGCACATGCTGGGCTCG
* * **
2453714 GGCATGTGCTGGTGCCGCATTTTTTTTTCGCTCAGGGCACCATCACCGGAGCATCGTCGGAGAAC
389 GGCATGTGCTGGTG-CGCATTTTTTTTTCCCT-GGGGCACCATCACCGGAGCATCACCGGAGAAC
* * * * *
2453779 CTGATCAACGGCATTGGGGTTCCGGTGATTGGGGAGC-AGGGGGTGTGCGCACATGATGTGCGAT
452 CTGACCGACGGCATTAGGGTTCCGGTGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGAT
*
2453843 GGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
517 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
2453908 CCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAACGTGTCTAAAATGGGG
582 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
*
2453973 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCA
647 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
2454038 TGCCAAACAAAATACAATGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTT
712 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAAATTT
* * * * * *
2454103 TAAAAAAATTTGGAACCATAAAAACTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCC
777 TAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
2454168 ATGAAACTTCACATGAAGGCTTAAGGGACCTTTGTATGAATTTAAAAGCCAC
842 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
2454220 AAAAATGGCATTGGCATAGAAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATC
1 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
2454285 CACGGCTTGCGCATCCCGCCTCTCTGGCTGGCATAGTGCCCGCCCGCCCACTCATTTCATCGGTT
66 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCG-CCGCTCGTTTCGTCGGTT
* * * ** *
2454350 GGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGGCCAGACCGAGGGTTGCAGCAGCAGG
130 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGTAGG
* ** * * * * ** *
2454415 ATTGGCAGCACATAGGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTTGTTGGCT
195 ATCGGCAGCACGCAGGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGACT
* * *
2454480 GAGCCCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
260 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
2454545 ATGGAGTTCATTCCCAGTCTAAAATCAGACCAGATCAAGGGTTGCTGGTGAACATGCAGGCCTCG
325 ACGGAGTTCATTCCCAGTGT-AAATCAGACCAGATCAAGGGTTGCGGGTGCACATGCTGGGCTCG
* * * * *
2454610 GGCACGTGTTGGTGCGGTATTTTTTTTTGCCC-GGGGCACCATC-TCGGAGCATCACTGGAGAAC
389 GGCATGTGCTGGTGC-GCATTTTTTTTT-CCCTGGGGCACCATCACCGGAGCATCACCGGAGAAC
* ** * *
2454673 CTGACCGACGACATTTA--GTTCCGACGATTGGGGTGCGGGGGGGGTGTGCGCAGATGATGTGCG
452 CTGACCGACGGCA-TTAGGGTTCCGGTGATTGGGGGGC-GGGGGGGTGTGCGCACATGATGTGCG
* * * **
2454736 ATGAGTGCTGGTACTTGGCACTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCATGC
515 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*** *
2454801 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATTAGTAGCCATTAAAGTGTCTGAAATGG
580 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* *
2454866 GGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
645 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
2454931 CATGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGAGCCAAAAATCTTTCTGAAAAAAT
710 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAAAT
* ** * *
2454996 TTTAAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTCTTG
775 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
2455061 CCATGAAACTTCACATGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCAT
840 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * ***
2455115 AAAAATGGCATTGGCATGGTAAAAATATGAAGATGTGCCTAAATTGACCTACCACCCTATCGATC
1 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
2455180 CACGGCTTGCGCATCCAGCCTCTCTGGCCGACATAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTT
66 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCG-CCGCTCGTTTCGTCGGTT
*
2455245 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
130 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
2455279 CATACGAGTT
Statistics
Matches: 3238, Mismatches: 400, Indels: 156
0.85 0.11 0.04
Matches are distributed among these distances:
869 66 0.02
870 571 0.18
871 2 0.00
873 1 0.00
874 4 0.00
875 9 0.00
876 110 0.03
877 3 0.00
879 2 0.00
881 5 0.00
882 10 0.00
883 470 0.15
884 56 0.02
885 136 0.04
886 99 0.03
887 5 0.00
889 1 0.00
890 5 0.00
891 9 0.00
892 5 0.00
893 18 0.01
894 26 0.01
895 536 0.17
896 238 0.07
897 109 0.03
898 8 0.00
899 98 0.03
901 49 0.02
902 547 0.17
903 40 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGTAGGA
TCGGCAGCACGCAGGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGACTG
AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTGTAAATCAGACCAGATCAAGGGTTGCGGGTGCACATGCTGGGCTCGGG
CATGTGCTGGTGCGCATTTTTTTTTCCCTGGGGCACCATCACCGGAGCATCACCGGAGAACCTGA
CCGACGGCATTAGGGTTCCGGTGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
Found at i:2454551 original size:26 final size:26
Alignment explanation
Indices: 2454515--2454566 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2454505 GTTGACTTAG
2454515 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2454541 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2454567 AATCAGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2455978 original size:735 final size:737
Alignment explanation
Indices: 2454485--2456013 Score: 2282
Period size: 735 Copynumber: 2.1 Consensus size: 737
2454475 TGGCTGAGCC
* * * * * *
2454485 CCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATCGA
* * *
2454550 GTTCATTCCCAGTCTAAAATCAGACCAGATCAAGGGTTGCTGGTGAACATGCAGGCCTCGGGCAC
66 GTTCATTCCCAGTCTAAAATCAGACCAGACCAAGGGTTGCGGGTGAACATGCAGGCCTCGGGCAA
* * ** ** *
2454615 GTGTTGGTGCGGTATTTTTTTTTGCCCGGGGCACCATCTCGGAGCATCACTGGAGAACCTGACCG
131 GTGCTGGTGCGGCATTTTTTTTTGCCCAAGAAACCATCTCGGAGCATCACCGGAGAACCTGACCG
* * * *
2454680 ACGACATTTAGTTCCGACGATTGGGGTGCGGGGGGGGTGTGCGCAGATGATGTGCGATGAGTGCT
196 ACGACATTGAGTTCCGACGATTGGGGTGCGGAGGGGGTGTGCGCACATGATGTGCCATGAGTGCT
* **
2454745 GGTACTTGGCACTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCATGCCCCCTTAAA
261 GGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
** * *
2454810 GAGCATTTGAGATTTTACAGGTTTGCTATTAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTT
326 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTT
* *
2454875 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
391 TTTCAAATGGTCACAAAATACTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
* *
2454940 AAAAATACAAGGATCACGTTTACCAAGTTTGGAGCCAAAAATCTTTCTGAAAAAATTTTAAAAAA
456 AAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCTGAAAAAATTTTAAAAAA
*** ** * * *
2455005 ATCTTGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
521 ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
*
2455070 TTCACATGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGT
586 TTCACATGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
*** *
2455135 AAAAATATGAAGATGTGCCTAAATTGACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGCC
651 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCAGCC
2455200 TCTCTGGCCGACATAGTGCCCG
716 TCTCTGGCCGACATAGTGCCCG
* *
2455222 CCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA-CGA
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATCGA
* * * * * * *
2455286 GTTCATTCCTA-TGTAAGATCAGACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGCAA
66 GTTCATTCCCAGTCTAAAATCAGACCAGACCAAGGGTTGCGGGTGAACATGCAGGCCTCGGGCAA
* *
2455350 GTGCTGGTGTC-GCATTTTTTTTCT-CCTAAGAAATCATCATCGGAGCATCACCGGAGAACCTGA
131 GTGCTGGTG-CGGCATTTTTTTT-TGCCCAAGAAACCATC-TCGGAGCATCACCGGAGAACCTGA
* * * * * *
2455413 CTGGC-AGCATTGGGGTTCCGACGATTGTGG-G-GTAGGGGGTGTGCGCACATGATGTGCCATGG
193 CCGACGA-CATT-GAGTTCCGACGATTGGGGTGCGGAGGGGGTGTGCGCACATGATGTGCCATGA
* * *
2455475 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACCCCT
256 GTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
2455540 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTGTAAAATGGGGAC
321 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
*
2455605 AATTTTTTCAAATGGTCACAAAATACTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG
386 AATTTTTTCAAATGGTCACAAAATACTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATG
* * *
2455670 CCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
451 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCTGAAAAAATTTTA
2455735 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCAT
516 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCAT
* * *
2455800 GAAACTTCACATGAAGGCTTACGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGC
581 GAAACTTCACATGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
2455865 ATGGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
646 ATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
*
2455930 CCGCCTCTCTGGCC-AGCATAGTGCCCG
711 CAGCCTCTCTGGCCGA-CATAGTGCCCG
2455957 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
2456014 ATCGGACCGG
Statistics
Matches: 710, Mismatches: 76, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
734 1 0.00
735 595 0.84
736 45 0.06
737 69 0.10
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (737 bp):
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATCGA
GTTCATTCCCAGTCTAAAATCAGACCAGACCAAGGGTTGCGGGTGAACATGCAGGCCTCGGGCAA
GTGCTGGTGCGGCATTTTTTTTTGCCCAAGAAACCATCTCGGAGCATCACCGGAGAACCTGACCG
ACGACATTGAGTTCCGACGATTGGGGTGCGGAGGGGGTGTGCGCACATGATGTGCCATGAGTGCT
GGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTT
TTTCAAATGGTCACAAAATACTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCTGAAAAAATTTTAAAAAA
ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
TTCACATGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCAGCC
TCTCTGGCCGACATAGTGCCCG
Found at i:2457039 original size:896 final size:896
Alignment explanation
Indices: 2455175--2458895 Score: 4569
Period size: 896 Copynumber: 4.1 Consensus size: 896
2455165 ACCACCCTAT
* * * * *
2455175 CGATCCACGGCTTGCGCATCCAGCCTCTCTGGCCGACATAGTGCCCGCCCGTC-CGCTCGTTTCG
1 CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGAC-T-GAG--CGCCCG-CACGCTCGTTTCG
* ** * *
2455239 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAC-GAGTTCATTCCTA-TGTAA
61 TCGGTTGACTTAGGCATATTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAA
* * * * *
2455302 GATCAGACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGCAAGTGCTGGTGTCGCA-TT
126 GATCAGACCAGACCAAGGGTTACGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
* ** * * * *
2455366 TTTTTTCTCCTAAGAAATCATCATCGGAGCATCACCGGAGAACCTGACTGGCAGCATTGGGGTTC
191 TTTTTTCACCTAAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTC
* *
2455431 CGACGATT-GTGGGGTAGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTA
256 CGACGATTAGGGGGGCAGGGGGTGTGCGCACATGATGTGCCATGGGTGCT-GTACTTGGCCCTTA
*
2455495 TATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTT
320 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTT
* * *
2455560 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTGTAAAATGGGGACAATTTTTTCAAATGGTCACA
384 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACA
* *
2455625 AAATACTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
449 AAATACTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
*
2455690 AGGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAA
514 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAA
*
2455755 AAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
579 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* * *
2455820 ACGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCATGGCATAAATATGAAGATG
644 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* * * *
2455885 TGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGC-CAGCAT
709 TACCCAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCTGA-CGT
2455949 AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
773 AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * * *
2456014 ATCGGACCGGACCGAGGGTTGTGACTGTAGGATTGGCAGCACATAGGGGGGGAGCCGGC
838 ATCAGACCAGACCAAGGGTTGCGACAGCAGGATTGGCAGCACATAGGGGGGAACCCGAC
* * * * * * * *
2456073 TGATCCCCGACTT-TCTCAT-CTGGCCCCTCTGGCCTG-CTAAACGCCCGCATGCTTGTTTCGTG
1 CGATCCCCGGCTTGT-GCATCCT-GCCCCTCTGGCC-GACTGAGCGCCCGCACGCTCGTTTCGTC
*
2456135 GGTTGACTTAGGCATATTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTGTAAGA
63 GGTTGACTTAGGCATATTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGA
* * * * *
2456200 TCAAACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTT
128 TCAGACCAGACCAAGGGTTACGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
** * * *
2456265 TTTTCA-CTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAACTAACTGGCGGCATTGGGGTTTC
193 TTTTCACCT-AAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCC
** * * * *
2456329 GGTGATT-GGGGGGCAGGGGTTATGCACACCTGATGTGCCATGGGTGCTGTACTTGGCCCTTATA
257 GACGATTAGGGGGGCAGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGTACTTGGCCCTTATA
* * *
2456393 TTGGCCCCCTTTCCCTCATGAAAGCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTA
322 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTA
*
2456458 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATAATTTTTTCAAATGGTCACAAA
386 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAA
*
2456523 ATACTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
451 ATACTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** * *
2456588 GTCTGCCAAGTTTGGGGCCGGAACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAACCGTAACAA
516 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAA
* * * *
2456653 GTTTCAAAAATCATGAGAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGATTAA
581 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
* *
2456718 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCATAAATATGAAGATGTG
646 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTA
* * *
2456783 CCCAAACCCACCTACCACCATATCCATCCATGACTTGCGCATCCCGCCTCTCTGGCTGACGTAGT
711 CCCAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCTGACGTAGT
* * *
2456848 GCCCACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATC
776 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
*** * * * *
2456913 AGACCAGATTGAGGGTTGCGATAGCAGGATTGGCAGAAAAT-GGGGAGGAACACGAC
841 AGACCAGACCAAGGGTTGCGACAGCAGGATTGGCAGCACATAGGGG-GGAACCCGAC
* ** * *
2456969 CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGTGCCCGCACGCTTTTTTTGTCGAT
1 CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTCGGT
2457034 TGACTTAGGCGTACGAAATTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGCATA
66 TGACTTA---G---G-----CA-T---A-T-T--G-------AGTTCATTCCCAGTCTAAGCATA
** * *
2457099 CAAAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTTATGGGTGCACATGCTGGGCTCGA
105 CGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTACGGGTGCACATGCTGGGCTCGA
** *
2457164 GCATGTGCTGGTGCCGCATTTTTTTTTCACCTGGGGCACCATCGTCGGAGCATTGCCGGAGAACC
170 GCATGTGCTGGTGCCGCATTTTTTTTTCACCTAAGGCACCATCGTCGGAGCATCGCCGGAGAACC
* **
2457229 TGACTGGCTGCATTGGGGTTCCGACGATTAGAGGGGGCAGGGGGTGTGCGCACATGATGTGCGTT
235 TGACTGGCGGCATTGGGGTTCCGACGATTAG-GGGGGCAGGGGGTGTGCGCACATGATGTGCCAT
* * *
2457294 TGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACATCG
299 GGGTGCTG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CC
*
2457359 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGT-TCGAAATGGG
362 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGG
* ** *
2457423 GACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
426 GACAATTTTTTCAAATGGTCACAAAATACTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * ** *
2457488 ATGCCAACAAAAATACAAGCATCACATCTTTCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
491 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* * * * *
2457553 TTAAAAAAATCCCTAACCATAAAAATTTTTAAAAATCGTGAAAAATAGAAAACGACTCGTCTTGC
556 TTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
2457618 CATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATT
621 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
2457683 GGCATGGCAGAAATATGAAGATG-ACCCTAAACCCAACTGCCACCCTATCGATCCACGACTTGCG
686 GGCATGGCAGAAATATGAAGATGTACCC-AAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * ** * * * * * *
2457747 CATCCCGTCTCTTTGG-TCGGTGTAGTGCTCGTCGGCCCGCTCGTTTCGTTGGTTGGCCTAGGTA
750 CATCCCGCCTCTCTGGCT-GACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *
2457811 TACGGAGTTCATTCCTAGCCTAAGATCTGACCAGACTAAGGGTTCCAACAGCAGGAATGGTAGCA
814 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATTGGCAGCA
***
2457876 TGCAGTGGGGG-ACCCGAC
879 CATAG-GGGGGAACCCGAC
** * * *
2457894 CGATCCCTAGCTTGTGCATCCTACACCTCTGGCCGACTGAACGCCCGCACGCTCG--T--TC---
1 CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTCGGT
*
2457952 ---CTT-GG---ATTGA---C-TT---AG-----GCATATGGAGTTCATTCCCAGTGTAAGATCA
66 TGACTTAGGCATATTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
* * * * **
2457998 GACCAGACCGAGGGTTACGGCTACACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTTTT
131 GACCAGACCAAGGGTTACGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTT
** ** * *
2458063 TCACCTAAGGCACCATCGTCGGAGCATCGTTGGAGAACCTGACCAGCGGCATTTGGGTTCCGACA
196 TCACCTAAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACG
* * * * * *
2458128 ATTGGGGGGGCGGGGGGTGTGCGCACATGATGAGCAATGGGTGCCGGTACTTGGCCCTTATACTG
261 ATTAGGGGGGCAGGGGGTGTGCGCACATGATGTGCCATGGGTG-CTGTACTTGGCCCTTATATTG
* *
2458193 GGCCCCTATCCCTCATCAAATCAT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
325 GCCCCCTATCCCTCATCAAA-CCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACA
* * *
2458257 GGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAAT
* *
2458322 GCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
453 ACTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * ** *
2458387 CTATCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATATCGAACCGTAAAAAGT
518 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGT
*
2458452 TTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
583 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
* * * *
2458517 GACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAACTATGGAGATCTACC
648 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTACC
* * * * * *
2458582 TAAACCCCACCTACCACCCTATCGATCCGCGGCTTGCACATCCCGCCTCTCTGGCCGACGGAGTG
713 CAAA-CCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCTGACGTAGTG
* * * * *
2458647 CCCGCCTGCCTGCTCGTTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATTA
777 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * ** * * * * * ** *
2458712 GATCAAATCAAGGGTTATGGCAACAGGATCGGTAGCACGTAGGGGGTTACCCGAT
842 GACCAGACCAAGGGTTGCGACAGCAGGATTGGCAGCACATAGGGGGGAACCCGAC
* * * * * *
2458767 CGATCCCCAGCTTGTGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGTAAGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTCGGT
* *
2458832 TGACTTAGAG-ATATGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
66 TGACTTAG-GCATATTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
2458896 GGATTAGACT
Statistics
Matches: 2437, Mismatches: 303, Indels: 165
0.84 0.10 0.06
Matches are distributed among these distances:
872 407 0.17
873 338 0.14
875 1 0.00
877 1 0.00
878 2 0.00
881 2 0.00
882 1 0.00
883 3 0.00
884 1 0.00
885 2 0.00
887 4 0.00
890 1 0.00
891 2 0.00
892 1 0.00
893 1 0.00
894 58 0.02
895 17 0.01
896 658 0.27
897 101 0.04
898 25 0.01
899 31 0.01
902 1 0.00
907 2 0.00
908 2 0.00
911 2 0.00
912 1 0.00
913 1 0.00
915 4 0.00
921 2 0.00
922 162 0.07
923 4 0.00
924 39 0.02
925 553 0.23
926 4 0.00
927 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTCGGT
TGACTTAGGCATATTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
GACCAGACCAAGGGTTACGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTT
TCACCTAAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACG
ATTAGGGGGGCAGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATACT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTC
AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTACCCAA
ACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCTGACGTAGTGCCCG
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AGACCAAGGGTTGCGACAGCAGGATTGGCAGCACATAGGGGGGAACCCGAC
Done.