Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 21 of 93
Found at i:2457088 original size:26 final size:26
Alignment explanation
Indices: 2457052--2457120 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
2457042 GCGTACGAAA
2457052 TTCATTCCCAGTCTAAGCATACAAAG
1 TTCATTCCCAGTCTAAGCATACAAAG
2457078 TTCATTCCCAGTCTAAGCATACAAAG
1 TTCATTCCCAGTCTAAGCATACAAAG
*
2457104 TTCATTCCCAGTGTAAG
1 TTCATTCCCAGTCTAAG
2457121 ATCGGACCAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (26 bp):
TTCATTCCCAGTCTAAGCATACAAAG
Found at i:2457528 original size:925 final size:921
Alignment explanation
Indices: 2456154--2457946 Score: 2581
Period size: 925 Copynumber: 1.9 Consensus size: 921
2456144 AGGCATATTG
** * * *
2456154 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTGTAAGATCAAACCGGACCGAGGGTT
1 AGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTGTAAGATCAAACCAGACCAAGGGTT
* *
2456219 GCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTTTTTCACTCGGGGCACCAT
66 ACGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTTCACTCGGGGCACCAT
* ** *
2456284 CGTCGGAGCATCGCCGGAGAAACTAACTGGCGGCATTGGGGTTTCGGTGATTGGGGGGCAGGGGT
131 CGTCGGAGCATCGCCGGAGAAACTAACTGGCGGCATTGGGGTTCCGACGATTGGGGGGCAGGGGG
* * *
2456349 TATGCACACCTGATGTGCCATGGGTGCTGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATGA
196 TATGCACACATGATGTGCCATGGGTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
2456414 AAGCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
261 AACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
*
2456479 TTAAAGTGTCTGAAATGGGGATAATTTTTTCAAATGGTCACAAAATACTGTACACTTCGAGTTTT
326 TTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATACTGTACACTTCGAGTTTT
* * ** **
2456544 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCCGG
391 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGCATCACATCTGCCAAGTTTGGGGCCAA
* * *
2456609 AACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAACCGTAACAAGTTTCAAAAATCATGAGAAAT
456 AACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAAT
* *
2456674 AGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGATTAAGGGACCATTGTATGAATTTAC
521 AGAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGATTAAGGGACCATTGTATGAATTTAC
* * *
2456739 AAGCCATAAAAATGGCATTGGCATGGCATAAATATGAAGATGTGCCC-AAACCCACCTACCACCA
586 AAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG-ACCCTAAACCCAACTACCACCA
* *
2456803 TATCCATCCATGACTTGCGCATCCCGCCTCTCTGG-CTGACGTAGTGCCCACCCGTCCGCTCGTT
650 TATCCATCCACGACTTGCGCATCCCGCCTCTCTGGTC-GACGTAGTGCCCACCCGCCCGCTCGTT
* * * * * *
2456867 TCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGC
714 TCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGACTAAGGGTTCC
* * * * * *
2456932 GATAGCAGGATTGGCAGAAAATG-G-GGAGGAACACGACCGATCCCCGGCTTGTGCATCCTGCCC
779 AACAGCAGGAATGGCAG--AATGAGTGG-GGAACACGACCGATCCCCAGCTTGTGCATCCTACAC
**
2456995 CTCTGGCCGACTGAGTGCCCGCACGCTTTTTTTGTCGATTGACTTAGGCGTACGAAATTCATTCC
841 CTCTGGCCGACTGAACGCCCGCACGCTTTTTTTGTCGATTGACTTAGGCGTACGAAATTCATTCC
2457060 CAGTCTAAGCATACAA
906 CAGTCTAAGCATACAA
**
2457076 AGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTT
1 AGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTGTAAGATCAAACCAGACCAAGGGTT
*
2457141 ATGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTTCAC-CTGGGGCACCA
66 ACGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTTCACTC-GGGGCACCA
* * * *
2457205 TCGTCGGAGCATTGCCGGAGAACCTGACTGGCTGCATTGGGGTTCCGACGATTAGAGGGGGCAGG
130 TCGTCGGAGCATCGCCGGAGAAACTAACTGGCGGCATTGGGGTTCCGACGATT-G-GGGGGCAGG
* * ** *
2457270 GGGTGTGCGCACATGATGTGCGTTTGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTC
193 GGGTATGCACACATGATGTGCCATGGGTGCTG-TACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
2457335 ATCAAACCTCAAGAACTCACATCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
257 ATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* **
2457400 GCAATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGA
322 GCAATTAAAGTGTCT-GAAATGGGGACAATTTTTTCAAATGGTCACAAAATACTGTACACTTCGA
** *
2457464 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGCATCACATCTTTCATGTTTGGG
386 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGCATCACATCTGCCAAGTTTGGG
* * * * *
2457529 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCTAACCATAAAAATTTTTAAAAATCGTGA
451 GCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGA
* *
2457594 AAAATAGAAAACGACTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAA
516 AAAATAGAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGATTAAGGGACCATTGTATGAA
* *
2457659 TTTACAAGGCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGACCCTAAACCCAACTGCC
581 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGACCCTAAACCCAACTACC
* * * * ** * ** *
2457724 ACCCTATCGATCCACGACTTGCGCATCCCGTCTCTTTGGTCGGTGTAGTGCTCGTCGGCCCGCTC
646 ACCATATCCATCCACGACTTGCGCATCCCGCCTCTCTGGTCGACGTAGTGCCCACCCGCCCGCTC
* * * *
2457789 GTTTCGTTGGTTGGCCTAGGTATACGGAGTTCATTCCTAGCCTAAGATCTGACCAGACTAAGGGT
711 GTTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGACTAAGGGT
* * * * *
2457854 TCCAACAGCAGGAATGGTAGCATGCAGTGGGGGACCCGACCGATCCCTAGCTTGTGCATCCTACA
776 TCCAACAGCAGGAATGGCAGAATG-AGTGGGGAACACGACCGATCCCCAGCTTGTGCATCCTACA
2457919 CCTCTGGCCGACTGAACGCCCGCACGCT
840 CCTCTGGCCGACTGAACGCCCGCACGCT
2457947 CGTTCCTTGG
Statistics
Matches: 765, Mismatches: 96, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
921 1 0.00
922 163 0.21
923 4 0.01
924 38 0.05
925 556 0.73
926 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (921 bp):
AGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTGTAAGATCAAACCAGACCAAGGGTT
ACGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTTCACTCGGGGCACCAT
CGTCGGAGCATCGCCGGAGAAACTAACTGGCGGCATTGGGGTTCCGACGATTGGGGGGCAGGGGG
TATGCACACATGATGTGCCATGGGTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
TTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATACTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGCATCACATCTGCCAAGTTTGGGGCCAA
AACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGATTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGACCCTAAACCCAACTACCACCAT
ATCCATCCACGACTTGCGCATCCCGCCTCTCTGGTCGACGTAGTGCCCACCCGCCCGCTCGTTTC
GTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGACTAAGGGTTCCAA
CAGCAGGAATGGCAGAATGAGTGGGGAACACGACCGATCCCCAGCTTGTGCATCCTACACCTCTG
GCCGACTGAACGCCCGCACGCTTTTTTTGTCGATTGACTTAGGCGTACGAAATTCATTCCCAGTC
TAAGCATACAA
Found at i:2459062 original size:26 final size:26
Alignment explanation
Indices: 2459026--2459078 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2459016 GTTAACTTAG
* *
2459026 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
2459052 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
2459078 G
1 G
2459079 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:2459977 original size:26 final size:26
Alignment explanation
Indices: 2459925--2459977 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2459915 GTTGACTTAG
* * *
2459925 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
*
2459951 GCATACAGAGTTCATTCCCACTGTAA
1 GCATACAGAGTTCATTCCCACTCTAA
2459977 G
1 G
2459978 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCACTCTAA
Found at i:2460418 original size:10 final size:11
Alignment explanation
Indices: 2460401--2460431 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
2460391 AAACTCCTTG
2460401 TAAAAAAATTT
1 TAAAAAAATTT
2460412 TAAAAAAATTT
1 TAAAAAAATTT
2460423 TAAAAAAAT
1 TAAAAAAAT
2460432 ATTGAACTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAAAATTT
Found at i:2462222 original size:26 final size:26
Alignment explanation
Indices: 2462192--2462244 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2462182 GTTGACTTAG
* *
2462192 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
*
2462218 GCATACGGAGATCATTCCCAGTTTAA
1 GCATACGGAGATCATTCCCAGTCTAA
2462244 G
1 G
2462245 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:2465462 original size:896 final size:893
Alignment explanation
Indices: 2460461--2466052 Score: 6808
Period size: 895 Copynumber: 6.2 Consensus size: 893
2460451 CATAAATCGA
* * * **
2460461 GCTCGGGCATGTGCTAGTGTCGCATTTTTTTTCTC-CCGAGAAACCATCGTCGGAGCATC-ACCG
1 GCTCGGGCATGTGCTGGTGTCACATTTTTTTT-TCGCCGGGGCACCATCGTCGGAGCATCGA-CG
* * * *** *
2460524 AAGAACCTGA-CTAGCGGCATAGGGGTTCCAACGATTGGGGG-GGTCAGGGGTGTGCGCACATGA
64 GAGAACCTGACCGA-CGGCATTGGGGTTCCGGTGATTGGGGGCGG--GGGGGTGTGCGCACATGA
* * *
2460587 TGTGCCACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAAC
126 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
2460652 TCACACCCCCTTAAAGAG-ATTTGTGATTTTAGAGGTTTGCTGCAAGTAGCCATTAAAGTCTCTG
191 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
2460716 AAATGGGGACAATTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
256 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
2460781 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACGAAGTGTGGGGCCAAAAGTCCTTCTGA
321 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT-TTGGGCCAAAACTCCTTCTGA
*
2460846 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT-ATTGAAAAATAGAAAACTAGT
385 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGT
* *
2460910 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGTGACCATTGTATGAATTTAGAAGCCATAAAA
449 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
2460975 ATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
514 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
2461040 GCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCT
579 GCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCT
* * * * * * *
2461105 TAGGCATACGGAGTTCATTCCTAGCCTAAGATTGGATCGGACTGAGGGTTTCGGTAGCAAGATCG
644 TAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTACAGTAGCAGGATCG
* * * * * * *
2461170 GTAGCACCTAGTGGGGGACCCGATGGATCCCTGGCTTGCGCATCCTCCCCCTCTGGCTGGCTGAG
709 GTAGCACATAG-GGGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAG
* * *
2461235 CGCCCGCACGTTCG-TTCTGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATAC
773 CGCCTGCACGCTCGTTTC-GTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAC
* * * * *
2461299 GAAGTTCATTGCCAGTGTATGATCGGATCGGACCGAGGGTTACGGATGCACATGCTGG
837 GGAGTTCATTCCCAGTGTAAGATCGGA-CGGACCGAGGGTTGCGGGTGCACATGCTGG
* ** * * *
2461357 GCTCGGGCATGTGTTGGTGTCGTA-TTGTTTTTCGCTCGGGGCACCATCATCGGAGCATCGTCGG
1 GCTCGGGCATGTGCTGGTGTCACATTTTTTTTTCGC-CGGGGCACCATCGTCGGAGCATCGACGG
* *
2461421 AGAACCTGACCGACGGCATTGGGGTTTCGGTGATTGGGGG-GGCGGGGTGTGCGCACATGATGTG
65 AGAACCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGCGGGGGGGTGTGCGCACATGATGTG
*
2461485 CGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
130 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * *
2461550 ACTGCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAC
195 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2461615 GGGGACACATTTTTTTCAAATGGTCACAAAA-CTTGATAGACTTCGAGGGGTTTTTTAGCTGAA-
260 GGGGACAC--TTTTTTCAAATGGTCACAAAATCCTG-TACACTTCGA---G-TTTTTAGCTGAAT
** * *
2461678 TTTTTTAAGCATAGCCAAC-AAAATGCAAGGATCATGTCTACCAAGGTTGGGACCAAAAACATCC
318 TTTTTTGTGCAT-GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG-CC-AAAAC-TCC
* * *
2461742 ATACTGAAAAAAATTTTTTCAAAAAAATCCACGAACCGTAAAAAGTTT-ATGGAAAATCGTGGAA
379 -TTCTG-AAAAAA--TTTT-AAAAAAATCC-CGAACCGTAAAAAGTTTCA---AAAATCATGAAA
*
2461806 AATAGAAAACGAGTCGTCTGGCCATGAAACTTCACATTGAAGGCATTAAGGGGACCATTGTATGA
435 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA-TGAAGGC-TTAA-GGGACCATTGTATGA
*
2461871 ATTTCACAAAGCCGATTAAAAATGGCATTGGCAGGGCAGAAATGAATGAAGATGTGCCATAAACC
497 ATTT-AC-AAGCC-A-TAAAAATGGCATTGGCATGGCAGAAAT--ATGAAGATGTGCC-TAAACC
* *
2461936 CACCTACCACCCTATCGGATCCACAGCTTG-GCGATCCCCGTCCTCTCTGGCCGGCGTCAGTGCC
555 CACCTACCACCCTATC-GATCCACGGCTTGCGC-AT-CCCG-CCTCTCTGGCCGGCAT-AGTGCC
*** * * *
2462000 ATTC-GCCCGGGCTCG-TTCGTCCGATTTGGCTTAGGCATACGGAGTTCATTCC-CGTCTAAGAT
615 CGCCTGCCC--ACTCGTTTCGT-CG-GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
* ** ** ** * * * * *
2462062 CAGACCGGACTAAGGGTGGCAACAGCCA-GATTGGTAGCATGCA-AAGGGGTACCCAACCGATCC
676 TAGACCGGACCGAGGGTTACAGTAG-CAGGATCGGTAGCA--CATAGGGGGGACCCGATCGATCC
** * * * * * * * *
2462125 TTGACTTGTGCATCCTGCCCCTCTGGCCTGATGAACGCCCGTAAGGTCGTTTCATGGGTTGACTT
738 CCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTT
* * *
2462190 AGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTTTAAGATCGGACCAG
803 AGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGA-CGG
* *
2462255 ACCGAGGGTTACGGGTGCACATGATGG
867 ACCGAGGGTTGCGGGTGCACATGCTGG
* * * *
2462282 GCTCGAGCATGTGCTGGTGTCGA-GTTTTTTTTTCGCCCGGGGCACAATCGCCGGAGCATC-ATC
1 GCTCGGGCATGTGCTGGTGTC-ACATTTTTTTTTCG-CCGGGGCACCATCGTCGGAGCATCGA-C
** * *
2462345 GGAGAACCTGACCGGTGGCATTGAGGCTCCGGTGATTGGGGGGGGCGAGGGGGGGTGTGCGCACA
63 GGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATT---GGGGGC--GGGGGGGTGTGCGCACA
*
2462410 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
123 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * *
2462475 AACTCACTCCACCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGT
188 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
2462540 TTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
253 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * * *
2462605 TTTTTTATGCATGCCAAAAAAAATACAAGGATCATATCT-CCAAGTCTAGGGCCAAAAATCTTTT
318 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT-TTGGGCCAAAACTCCTTC
* *
2462669 TGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
382 TGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
2462734 GTCGTCTTGCCATGAAATTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAA
447 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
2462799 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCTA
512 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
2462864 TGGCTTGCGCATCCCGCCCCTTTGACCGG-AGTAGTGCCCACCTGCCCACTCGTTTCGTCGGTTG
577 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCA-TAGTGCCCGCCTGCCCACTCGTTTCGTCGGTTG
* * * * * * *
2462928 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTCCAGCAGCAAGA
641 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTACAGTAGCAGGA
* * * *
2462993 TCAGTAACACATAGGGGCAGACCCAATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCT
706 TCGGTAGCACATAGGGG-GGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCT
* *
2463058 GAGCG-CTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
770 GAGCGCCT-GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCA
* * * * ** * *
2463122 TACGGAGTTCAATCCCAGCGTAAGATCGAACTGAACCGAGGGTTTTGGGTGCACGTGCTAG
834 TACGGAGTTCATTCCCAGTGTAAGATCGGAC-GGACCGAGGGTTGCGGGTGCACATGCTGG
** * ** * **
2463183 GCTCGGTTATTTGCTGGTG-C-TGTATTTTTTTAACCGGGGCACCA---TC---G---C--CGGA
1 GCTCGGGCATGTGCTGGTGTCACATTTTTTTTTCGCCGGGGCACCATCGTCGGAGCATCGACGGA
* * * *
2463235 GAACCTGACCGGCGACATTGGGGTTCCGGCGATTGGGGGGCGGGGGGATGTGCGCACATGATGTG
66 GAACCTGACCGACGGCATTGGGGTTCCGGTGATT-GGGGGCGGGGGGGTGTGCGCACATGATGTG
* * * *
2463300 CGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAT
130 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2463365 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
195 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2463430 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTTTG
260 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
2463495 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAAATCCTTCTGAAAAA
325 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG-GGCCAAAACTCCTTCTGAAAAA
* * * **
2463560 ATTTTAAAAATATCCCGAATCC-TAAAATGTTTCAAAAATCATGAAAAATAGAGAATAAGTCGTC
389 ATTTTAAAAAAATCCCGAA-CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
2463624 TTGCCATGAAACTTCACATGAAGGCTTAATGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
453 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
2463689 CATTGGCATGGCATAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGACTT
518 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
2463754 GCGCATCCTGCCTCTTTGGCCGGCGTAGTGCCCGCCCGCCTC-CTCGTTTCGTCGGTTGGCTTAG
583 GCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCTGCC-CACTCGTTTCGTCGGTTGGCTTAG
* *
2463818 GCATACGGAGTTCATT-CTCAGTCTAAGATTAGACCAGACCGAGGGTTACAGTA-CTAGGATCGA
647 GCATACGGAGTTCATTCCT-AGTCTAAGATTAGACCGGACCGAGGGTTACAGTAGC-AGGATCGG
** * * * * * *
2463881 TAGCACACGGGGGGGACCCGATAGATCCCTGACTTGTGCATCCTGCCTCTTTGTCCGACTGAGCG
710 TAGCACATAGGGGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCG
* *
2463946 CCTGCACGCTC-ATTCGATGGGTTGACTTAGGCATATCGAGTTCATTCCCAGTCTAAGCATACGG
775 CCTGCACGCTCGTTTCG-TGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * * *
2464010 AGTTCAATCCCAGTGGAAGATCGGATCGGACTGAGGGTTGCAGATGGACATGCTAG
839 AGTTCATTCCCAGTGTAAGATCGGA-CGGACCGAGGGTTGCGGGTGCACATGCTGG
** * * *
2464066 GCTCGAGG-ATGTGCTGGTGTCACATTTTTTTTT-GCCTGGGGCACCATCACCAGAGCATTGCCG
1 GCTCG-GGCATGTGCTGGTGTCACATTTTTTTTTCGCC-GGGGCACCATCGTCGGAGCATCGACG
*
2464129 GAGAACCTGATCGACGGCATTGGGGTTCCGGTGATTGAGGGGCGGGGGGGTGTGCGCACATGATG
64 GAGAACCTGACCGACGGCATTGGGGTTCCGGTGATTG-GGGGCGGGGGGGTGTGCGCACATGATG
* *
2464194 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
128 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
2464259 ATA-CCCCTTAAGGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGTCATTAAAGTGT-TTAT
193 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-
* * * *
2464322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGCTTTTACCTGAATGTTT
257 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
2464387 TTGTGCTTGCCAACAAAAATACAAGGATCATGTCTACCAAGTGTGGAGCCAAAACTCCTTCTGAA
322 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG-GCCAAAACTCCTTCTGAA
* * *
2464452 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCA
386 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
2464517 TCTTGCCATGAAACTTCAAATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
451 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
2464582 GGCATTGGCACAGCAGAAATATAAAGATGTGCCTAAACCCTCCTACCATCCTATCGATCC-CTGG
516 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GG
* * * * * * *
2464646 CTTACGCATCCCGCCTCTCTAGCCGGCATAGTGTCCGCCTGCCTAATCATTTCGTCGGTTTGCTT
580 CTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCTT
* * * *** *
2464711 AGGCATACAGAGTTTATTCCTAGTCTAAGATTAGACCTGACCGAGGGTTGTGGTAGTAGGATCGG
645 AGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTACAGTAGCAGGATCGG
* * * * * * *
2464776 CAGCA-AGTCGGGGGGACCTGATCGATCCCCGACTTGTACATCCTACCCCTCTGGCCGGTTGATC
710 TAGCACA-TAGGGGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGC
* * *
2464840 GCCTGCACGCTGGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTTTAAGCATACGG
774 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
2464905 AGTTCATTCCCAGTGTAAGATCGAAGCAGACCAAGGGTTGTGGGTGCACATACTGG
839 AGTTCATTCCCAGTGTAAGATCGGA-CGGACCGAGGGTTGCGGGTGCACATGCTGG
* * *
2464961 GCTTGGGCATGTGCTGGTGTCACATTTTTTTTTCGCTCGGGGCACCATCGTCGGAGTATCGACAG
1 GCTCGGGCATGTGCTGGTGTCACATTTTTTTTTCGC-CGGGGCACCATCGTCGGAGCATCGACGG
***
2465026 AGAACCTGACCGACGGCATTGGGGTTTTAGTGATTGGGGGCTGGGGGGGTGTGCGCACATGATGT
65 AGAACCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGC-GGGGGGGTGTGCGCACATGATGT
* * *
2465091 GAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCA
129 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
2465156 CACCGCCTTAAAGAGCATTAGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAA
194 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2465221 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGTTGAATTTTTTT
259 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
2465286 GGGCATGCCAACAAAAATACAAGGATCACGT-TACCAAGTTTGAGGCCAAAACTCTTTCTGAGAA
324 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG-GGCCAAAACTCCTTCTGAAAA
* * *
2465350 AATTTTAAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTC
388 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
2465415 TTGCCATGAAAGTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGT
453 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
2465480 CATTGGCATGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
518 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * * * *
2465545 GCTTATCCCACCTCTCTAGTCGGCATAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
583 GCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGG
* * ** * **
2465610 CATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTACAGTAGTAGGATCGACAG
648 CATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTACAGTAGCAGGATCGGTAG
* * * * **
2465675 CACATAGGAGGGGACCCGGTCGATCCCCGGCTTATGCATCCTACCCCTCTGGCCAACTGAGCGCC
713 CACATAGG-GGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCG-C
*
2465740 CT-CACGCTCGTTTCGTGGGTTGACTTAGG-ATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
776 CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
2465803 TTCA-TGCTAGTGTAAGATCGGACTGGACCGAGTGTTGCAGGTGCACATGCTGG
841 TTCATTCCCAGTGTAAGATCGGAC-GGACCGAGGGTTGCGGGTGCACATGCTGG
* * * *
2465856 GCTCGGGCATGTGCTGTTGCCACTTTTTTTTTTCGCCCGAGGCACCATCGTCGGAGCATCGTCGG
1 GCTCGGGCATGTGCTGGTGTCACATTTTTTTTTCG-CCGGGGCACCATCGTCGGAGCA---TC--
** ** *
2465921 AGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGGTTGGGGG-GTGGGGGGTGTGC
60 -G-A----CGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGCG-GGGGGGTGTGC
* *
2465985 GCACATGATGTGTGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
118 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
2466050 TCG
183 TCG
2466053 NNNNNNNNNN
Statistics
Matches: 4057, Mismatches: 504, Indels: 261
0.84 0.10 0.05
Matches are distributed among these distances:
882 3 0.00
883 391 0.10
884 321 0.08
885 27 0.01
887 33 0.01
888 1 0.00
889 1 0.00
891 1 0.00
892 1 0.00
894 106 0.03
895 776 0.19
896 696 0.17
897 248 0.06
898 17 0.00
899 15 0.00
900 73 0.02
901 221 0.05
902 16 0.00
903 19 0.00
904 11 0.00
905 86 0.02
906 62 0.02
907 24 0.01
908 17 0.00
909 25 0.01
910 44 0.01
911 12 0.00
912 6 0.00
913 37 0.01
914 5 0.00
915 12 0.00
916 46 0.01
917 25 0.01
918 16 0.00
919 24 0.01
920 28 0.01
921 14 0.00
922 10 0.00
923 22 0.01
924 13 0.00
925 208 0.05
926 119 0.03
927 36 0.01
929 5 0.00
930 29 0.01
931 4 0.00
932 151 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (893 bp):
GCTCGGGCATGTGCTGGTGTCACATTTTTTTTTCGCCGGGGCACCATCGTCGGAGCATCGACGGA
GAACCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTACAGTAGCAGGATCGGTAGCAC
ATAGGGGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTGTAAGATCGGACGGACCGAGGGTTGCGGGTGCACATGCTGG
Found at i:2465917 original size:11 final size:11
Alignment explanation
Indices: 2465901--2465933 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
2465891 CCCGAGGCAC
2465901 CATCGTCGGAG
1 CATCGTCGGAG
2465912 CATCGTCGGAG
1 CATCGTCGGAG
*
2465923 CATCGCCGGAG
1 CATCGTCGGAG
2465934 AACCTGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:2467328 original size:26 final size:26
Alignment explanation
Indices: 2467292--2467344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2467282 GTTGACTTAG
2467292 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2467318 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2467344 G
1 G
2467345 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2468221 original size:26 final size:26
Alignment explanation
Indices: 2468181--2468236 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
2468171 TGGGTTGACT
*
2468181 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
2468207 TAAGCATACGAAGTTCATTCCCAGTG
1 TAAGCATACGAAGTTCATTCCCAGTC
2468233 TAAG
1 TAAG
2468237 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:2469102 original size:25 final size:25
Alignment explanation
Indices: 2469067--2469124 Score: 91
Period size: 25 Copynumber: 2.3 Consensus size: 25
2469057 GTTGACTTAG
2469067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCAT-CGGAGTTCATTCCCAGTCTAA
*
2469093 GCATCGGAGTTCATTCCCAGTGTAA
1 GCATCGGAGTTCATTCCCAGTCTAA
2469118 G-ATCGGA
1 GCATCGGA
2469125 CCGGACCGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 6 0.19
25 21 0.68
26 4 0.13
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
GCATCGGAGTTCATTCCCAGTCTAA
Found at i:2469696 original size:884 final size:881
Alignment explanation
Indices: 2467200--2470618 Score: 4594
Period size: 884 Copynumber: 3.9 Consensus size: 881
2467190 CCAGGGTATG
* * * * * *
2467200 ACACAGATGGGGACCCGGCCGATCCCCAGCTTGTGCATCCTGCCCCTTTGGCCGGCTGAGCACCC
1 ACACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCACTC
2467265 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
66 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
2467330 CATTCCCAGTGTAAGATCGGACCGGATCGAGGGTTAC-GAGCGCACATGCTAGGCTCGGGCATGT
131 CATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGA-TGCACATGCTAGGCTCTGGCATGT
* * * *
2467394 GCTGGTGCTGCATTTTTTTTTCGCCTGAGGCACCATCGCCAGAGCATCGCCAGATAACCTGATCG
195 GCTGGTGCCGCA-TTTTTTTT-GCCCGGGGCACCATCGCC---G----G--AG--AACCTGACCG
* * *
2467459 ACGGCATTGGGGTTCCGACGATTGGGGGGGTGGGGGGGTGTGCGCACATGATGTACGATGGGTGC
247 ACGGCATAGGGGTTCCGACGATT-GGGGGGT-GGGGGGTCTGCGCACATGATGTGCGATGGGTGC
* *
2467524 TGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
310 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
2467589 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTAAAATGGGGACACTT
375 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
2467654 TGTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAA
440 T-TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA
2467718 -AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAA
504 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAA
*
2467782 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG-CATGAA
568 AAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
2467846 ACTTCACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
633 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
2467911 GCAAAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTCGCGCATCCTG
698 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
2467976 CCTCTCTGGCCGACGTAGTGCCCG--CT-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTT
763 CCTCTCTGGCCGACATAGTGCCCGCCCTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** * **
2468038 CATTCCTAGTCTAAGATCATATGGGACTGAGGGTTGTGGCAGTAGGATCGATAGC
828 CATTCCCAGTCTAAGATCAGAACGAACTGAGGGTTACGGCAGTAGGATCG-TAGC
*** * *
2468093 ATGTA-AGGGGGACCCGGCCGATCCCC-GACTTGTGCATCCTGCCCCTCTGG-CTGGCTGAACGC
1 ACACAGAGGGGGACCCGACCGATCCCCAG-CTTGCGCATCCTGCCCCTCTGGTC-GGCTG-A-GC
* * * *
2468155 A-T-GCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
62 ACTCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * * *
2468218 AGTTCATTCCCAGTGTAAGATCAGACCAGATCGAGAGTTGCGGGTGCACATGCTGGGCTCAGGCA
127 AGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGATGCACATGCTAGGCTCTGGCA
* ** * *
2468283 TGTGTTGGTGCCATATTTTTTTTTGCCCGGGGCACCATCGCCGGAGAACCTAACCGGCGGCATAG
192 TGTGCTGGTGCCGCA-TTTTTTTTGCCCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATAG
** ** * *
2468348 GGGTTAAGGTGATT-GGGGGTGGGGGGTCTGCGCACTTGATGTGCGATGGGTGATGGTACTTGGC
256 GGGTTCCGACGATTGGGGGGTGGGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
2468412 CCTTATATTGGCCCGCTATCCCTCATGAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGA
321 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
2468477 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGCGGACACTTTTTTCAAATGG
386 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGG
* ** *
2468542 TCATAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTCACATGCAAACAAAAATACAA
450 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAA
* * ** *
2468607 GGATCACATCTACCAACTACGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAAATC-CAGAAC
515 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC-GAAC
* * *
2468671 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGA
579 CATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
* * * * *
2468736 AGACTTCAGGGACCAGTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATG
644 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATG
* ** *
2468801 AAGATGTGCCTAAACCCACCTACCACCCTATCGAACCATAGCTTACGCATCCCGCCTCTCTGGCC
709 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC
*
2468866 GACATAGTGCCCGCCCGTCCGCTCG-CTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
774 GACATAGTGCCCGCCC-TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
2468930 CTAAGATCAGACCGAAATGAGGGTTACGACAGAAGTATCAGTGGC
838 CTAAGATCAGAACGAACTGAGGGTTACGGCAGTAGGATC-GTAGC
* * * * * * * *
2468975 ACACAGAGGCGGACCCGACCAATCCCCGGCTTGCGGATCATGCCGCTTTGGTCGACTGAGCACTC
1 ACACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCACTC
* *
2469040 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-CGGAGTT
66 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
2469104 CATTCCCAGTGTAAGATCGGACCGGACCGAGGGCTGCGGATGAACATGCTAGGCTCTGGCATGTG
131 CATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGATGCACATGCTAGGCTCTGGCATGTG
* * *
2469169 TTGGTGCCGCATTTTTTTTGCGCTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATAAGGG
196 CTGGTGCCGCATTTTTTTTGC-C-CGGGGCACCATCGCCGGAGAACCTGACCGACGGCATAGGGG
* * * *
2469234 TTCCGCCGATTTGGGGGGCGGGGGGTCTGCGCACATGATGCGCAATGGGTGCTGGTACTTGGCCC
259 TTCCGACGA-TTGGGGGGTGGGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
2469299 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAATGAGCATTTGAGA
323 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
2469364 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTC
388 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT-TTCAAATGGTC
* *
2469429 -CAAAAATCCTGTACACTACGAGTTTTTTGCTGAATTTTTTTTTGCATGCCAA-AAAAATACAAG
452 AC-AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAG
* * *
2469492 GATCACGTCTACCAAGTTTGGTGCCAAAACTACTTC-GAAAAAAATTTTAAAAAAATCTCGAATC
516 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAAATCTCGAACC
** * *
2469556 ATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGACTCGTCTTGCCATGAAACTTCACATGAA
580 ATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
*
2469621 GTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGA
645 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGA
*
2469686 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCC-
710 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* *
2469750 AGCATAGTGCCCAGCCAC-CCGCTCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCTCAG
775 A-CATAGTGCCC-GCC-CTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * *
2469814 -CTAAGAT-TGAACGAGACCGACGGTTACGGTACTAGGATCGGTAGC
837 TCTAAGATCAGAACGA-ACTGAGGGTTACGGCAGTAGGATC-GTAGC
* * * * *
2469859 ATGCA-AG-GGGGGACCCGATCGATCCCCAGCTTGCGCATCCTGTCCCTCTAGTCGGCTGGGCGC
1 A--CACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCAC
* * * *
2469922 -CTACACGCTCATTTCGTGGTTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAGA
64 TC-ACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
2469986 GTTCATTACCAGTGTAAGATCGGACCGGACTGAGGGTTGTAGG-TGCACATGCTGGGCT-TGGGC
128 GTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTG-CGGATGCACATGCTAGGCTCT-GGC
* * * * ** *
2470049 ATGTGCTGGTGCCGTATTTTTTTCGCCTGGGGCACCATCGCCGGAGAACTTGACCGATAGCATTG
191 ATGTGCTGGTGCCGCATTTTTTTTGCCCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATAG
* *
2470114 GGGTTCCGACGATTGGGGGGTGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGC
256 GGGTTCCGACGATTGGGGGGTGGGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
2470179 CCTTTTATTGGCCCCCTATCCCTCATCAATCCCCGAGAACTCATACCCCCTTAAAGAGCATTTGA
321 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
2470244 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTCTCAATTGG
386 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT-TCAAATGG
* * * *
2470309 TTACAAAATCTTGTACAATTGGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAACAAAAATACA
450 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTTTGCATGCCAACAAAAATACA
* * * *
2470374 AGGATCACGTCTACCAAGTTT-GGCCCAAAACT-CTATCTGAGAAAATTTTCAAAAAAATCCCAA
514 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCTGAAAAAATTTT-AAAAAAATCTCGA
*
2470437 ACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACAT
577 ACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* *
2470502 GAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAACGGCATTGGCATGGCAAAAATA
642 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATA
* * *
2470567 TGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTACGCAT
707 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
2470619 ACGGAGTTCA
Statistics
Matches: 2232, Mismatches: 248, Indels: 101
0.86 0.10 0.04
Matches are distributed among these distances:
877 193 0.09
878 84 0.04
879 196 0.09
880 25 0.01
881 15 0.01
882 345 0.15
883 233 0.10
884 602 0.27
885 330 0.15
886 5 0.00
888 1 0.00
891 18 0.01
892 178 0.08
893 4 0.00
894 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
ACACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCACTC
ACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGATGCACATGCTAGGCTCTGGCATGTG
CTGGTGCCGCATTTTTTTTGCCCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATAGGGGTT
CCGACGATTGGGGGGTGGGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAA
AATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCA
CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCATAAAA
AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATAG
TGCCCGCCCTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGAACGAACTGAGGGTTACGGCAGTAGGATCGTAGC
Found at i:2473022 original size:897 final size:896
Alignment explanation
Indices: 2470887--2473282 Score: 3341
Period size: 897 Copynumber: 2.7 Consensus size: 896
2470877 GCACCATCGT
* ** *
2470887 CGGAGAACCTGACCAGCGGCATTGGGGTT-CCGACGA-T-AGG-GG-TTGGGGGGTGTGCACACA
1 CGGAGAACCTGACCAGCGGCATTGGGGTTCCCG-CGATTGGGGCGGCGGGGGGGGTGTGCGCACA
* *
2470947 TGATGTGCAATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAA
65 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
2471012 AACTCACA-CCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGT
130 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
2471076 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAGACTTTGATTTTTTAGCTGAAT
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAAT
* * * * *
2471141 TTCTTTGTGCATGCCAACAAAAATATAAGGATCATGTCTACCAAGTGTAGGGCCAAAACTTCTTC
260 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGT-TTGGGCCAAAACTCCTTC
* * * *
2471206 TGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGA
324 TGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
2471271 GTCATCTTGCCATGAAACATCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAA
389 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
2471336 AAATGGCATTAGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCTA
454 AAATGGCATTGGCATGGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCA
* * * * **
2471401 CGGCTTGTGCATCCCGTCTCTATTTTCGACGTAGTGCCTGCCCGTCCGCTCATTTAATCGGTTGG
519 CGGCTTGCGCATCCCG-C-CTATTGTCGACGTAGTGCCCGCCCCT-CGCTCATTTCGTCGGTTGG
* * **
2471466 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTACTGCAGTAGGAT
581 CTTAGGCATACAGAGCTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACTGCAGTAGGAT
** * * *
2471531 TGGCAGCACATAGGGGGTACCTGGTCGATCCCCGGCTTGGGCATCCTACCCCTCTGGCCGACTGA
646 TGGCAGCACATAGGGGGTACCCAGCCGATCCCCAGCTTGGGCATCCTACCCCACTGGCCGACTGA
* * *
2471596 GCGCCCGCACGCTCGTTTCGCGTGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATAC
711 GCGCCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATAC
* * * *
2471661 GGAGTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAGA
776 GAAGTTCATTCCCAATGTAAGATCAGATCAGACCGAGGGTTGTGGGTGCACATACTGGGCTCAGA
* * * * * *
2471726 CATGTGCTGGTGCTGCATTTTGTTTTTTGCCCAGCGCACCATCGTCGGAGCATCGT
841 CATGTGCTGGGGCTGCATTTTGTTTTCTGACCAGCGCACCATCGCCGGAGCAACGC
* * *
2471782 TGGAGAACCTGGCCAGCGGCATTGGGGTTCCGGCGATTGGGGCGGCGGGGGGGGGTGTGCGCACA
1 CGGAGAACCTGACCAGCGGCATTGGGGTTCCCGCGATTGGGGCGGC-GGGGGGGGTGTGCGCACA
*
2471847 TGATGTGCAATGGGTACTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAG
65 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
2471911 AACTCACACCCCATCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
130 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
2471976 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTATAGCTGAAT
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAAT
**
2472041 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAT-TTTGGGGCCAAAACTCCTT
260 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC-ATGTTT-GGGCCAAAACTCCTT
* * *
2472105 TTGAAAAAATTTTAAAAAAATTTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATG
323 CTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
2472170 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCTTA
388 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
2472235 AAAATGGCATTGGCATGGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCC
453 AAAATGGCATTGGCATGGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCC
* * * * *
2472300 ATGACTTGCGCATCCCGCCTCTTGTCGACGGAGTGCCCGCCCACTCGCTCATTCCGTCGGTTGGC
518 ACGGCTTGCGCATCCCGCCTATTGTCGACGTAGTGCCCGCCC-CTCGCTCATTTCGTCGGTTGGC
* * ** * *
2472365 TTAGGCATACAGTGCTGATTCCCAGTCTAAGATCAGACTGGATTGAGGGTT-GTGGTAGTAGGAT
582 TTAGGCATACAGAGCTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACT-GCAGTAGGAT
* * * * **
2472429 TGGCAGCACGTAGGGGG-ACCCAGCCGATCCCCAGCTTGTGCATCCTGCCCCACTGGTCGGTTGA
646 TGGCAGCACATAGGGGGTACCCAGCCGATCCCCAGCTTGGGCATCCTACCCCACTGGCCGACTGA
* * *
2472493 GCG-TCGACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
711 GCGCCCG-CACGCTCGTTTCGCGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATA
* * * *
2472557 CGAAGTTCATTCCCAATGTAGGATCAGA-CTGAACCGAGGGTTTTGGGTGCACATACTGGGCTTG
775 CGAAGTTCATTCCCAATGTAAGATCAGATCAG-ACCGAGGGTTGTGGGTGCACATACTGGGC-TC
* * * *
2472621 GGA-ATGTGCTGGGGCTGCATTTCT-TTTTCT-ATCGGGGCACCATCGCCGGAGCAACGC
838 AGACATGTGCTGGGGCTGCATTT-TGTTTTCTGACCAGCGCACCATCGCCGGAGCAACGC
* * *
2472678 CGGAGAACCTGACC-GACGGCTTTGGGGTTCCCGCGATTGGGGGGGCGGGGGGAGTGTGCGCACA
1 CGGAGAACCTGACCAG-CGGCATTGGGGTTCCCGCGATTGGGGCGGCGGGGGGGGTGTGCGCACA
* *
2472742 TGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-TACAAACCTCGA
65 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCGA
* * * *
2472806 GAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTGGCGGCCAGTAGCCATTAGAGTG
129 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
2472871 TCTAAAATGGGGACACTTTGTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
194 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAA
* *
2472936 TTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGCCCAAAACTCCA
259 -TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGG-CCAAAACTCCT
* * * * *
2473001 TCCGAAAAAATTTTTAAAAAATCTCGGACCGTAAAATGTTCCAAAAATCGTGAAAAATAGAAAAC
322 TCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
2473066 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
387 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
2473131 AAAAATGGAATTGGCATGGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC
452 AAAAATGGCATTGGCATGGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC
* * * * * * * *
2473196 CACGGCTTGCGCATCCCACCTTTTTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTTGGTC
517 CACGGCTTGCGCATCCCGCC-TATT-GTCGACGTAGTGCCCGCCC-CTCGCTCATTTCGTCGGTT
*
2473261 GGCTTAGGCATACAGAGTTCAT
579 GGCTTAGGCATACAGAGCTCAT
2473283 GATGTGTGAT
Statistics
Matches: 1330, Mismatches: 148, Indels: 42
0.88 0.10 0.03
Matches are distributed among these distances:
895 85 0.06
896 213 0.16
897 421 0.32
898 114 0.09
899 84 0.06
900 412 0.31
901 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (896 bp):
CGGAGAACCTGACCAGCGGCATTGGGGTTCCCGCGATTGGGGCGGCGGGGGGGGTGTGCGCACAT
GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGCCAAAACTCCTTCTG
AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGCCTATTGTCGACGTAGTGCCCGCCCCTCGCTCATTTCGTCGGTTGGCTTAG
GCATACAGAGCTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACTGCAGTAGGATTGGCA
GCACATAGGGGGTACCCAGCCGATCCCCAGCTTGGGCATCCTACCCCACTGGCCGACTGAGCGCC
CGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGAAGT
TCATTCCCAATGTAAGATCAGATCAGACCGAGGGTTGTGGGTGCACATACTGGGCTCAGACATGT
GCTGGGGCTGCATTTTGTTTTCTGACCAGCGCACCATCGCCGGAGCAACGC
Found at i:2473765 original size:539 final size:540
Alignment explanation
Indices: 2472740--2473821 Score: 1639
Period size: 539 Copynumber: 2.0 Consensus size: 540
2472730 AGTGTGCGCA
*
2472740 CATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTACAAACCTCG
1 CATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTACAAACCTCA
*
2472805 AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTGGCGGCCAGTAGCCATTAGAGT
66 AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTGGCGGCCAGTAGCCATTAAAGT
*
2472870 GTCTAAAATGGGGACACTTTGTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
131 GTCTAAAATGGGGACACTTTGTTCAAATGCTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
* * *
2472935 ATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGCCCAAAACTCC
196 ATTTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCC
* * ** * * *
2473000 ATCCGAAAAAATTTTTAAAAAATCTCGGACCGTAAAATGTTCCAAAAATCGTGAAAAATAGAAAA
261 ATCCGAAAAAATTTTAAAAAAATCCCAAACCATAAAAAGTTCCAAAAATCATGAAAAATAGAAAA
* * *
2473065 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
326 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGAACCATGGTATGAATTTAAAAGCCA
* *
2473130 TAAAAATGGAATTGGCATGGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
391 TAAAAATGGAATTGGCATGGAAGAAATATGAAGATGTACCTAAACCCACCTACAACCCTATCGAT
* * * * *
2473195 CCACGGCTTGCGCATCCCACCTTTTTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTTGGT
456 CAACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCTCGTTTCGTCGGT
2473260 CGGCTTAGGCATACAGAGTT
521 CGGCTTAGGCATACAGAGTT
* *
2473280 CATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTC
1 CATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTA-CAAACCTC
** * * *
2473344 AAGAACTCGTACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
65 AAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTGGCGGCCAGTAGCCATTAAAG
* * * * * *
2473409 TGTCTGAAATGGGTACACTTTTTTCAAATGCTCACAAAATCCTGTGCATTTCGAGTTTTTGGCTG
130 TGTCTAAAATGGGGACACTTTGTTCAAATGCTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
* * *
2473474 AATTTTTTTT-TAG-ATACCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAATT
195 AATTTTTTTTGT-GCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACT
* * * ***
2473537 CCTTCTGAAAAAATTTTAAAAAAATCCCAAACTATAAAAAGTTTTGAAAATCATGAAAAATAGAA
259 CCATCCGAAAAAATTTTAAAAAAATCCCAAACCATAAAAAGTTCCAAAAATCATGAAAAATAGAA
2473602 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGAACCATGGTATGAATTTAAAAGC
324 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGAACCATGGTATGAATTTAAAAGC
* * *
2473667 CATAAAAATGGCATTGGCATGGAAGAAATATGAATATGTGCCTAAACCCACCTACAACCCTATCG
389 CATAAAAATGGAATTGGCATGGAAGAAATATGAAGATGTACCTAAACCCACCTACAACCCTATCG
** *
2473732 ATCAACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCTCGCTCGTTTCGTCG
454 ATCAACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCTCGTTTCGTCG
* * *
2473797 GTTGGCTTAGGTATACGGAGTT
519 GTCGGCTTAGGCATACAGAGTT
2473819 CAT
1 CAT
2473822 TCCTAGTCTA
Statistics
Matches: 486, Mismatches: 54, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
539 299 0.62
540 187 0.38
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (540 bp):
CATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTACAAACCTCA
AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTGGCGGCCAGTAGCCATTAAAGT
GTCTAAAATGGGGACACTTTGTTCAAATGCTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCC
ATCCGAAAAAATTTTAAAAAAATCCCAAACCATAAAAAGTTCCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGAACCATGGTATGAATTTAAAAGCCA
TAAAAATGGAATTGGCATGGAAGAAATATGAAGATGTACCTAAACCCACCTACAACCCTATCGAT
CAACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCTCGTTTCGTCGGT
CGGCTTAGGCATACAGAGTT
Found at i:2482646 original size:896 final size:895
Alignment explanation
Indices: 2479273--2483475 Score: 5879
Period size: 895 Copynumber: 4.7 Consensus size: 895
2479263 TGTCACACAG
** *
2479273 GGGGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCAAGCCGGCTGAGCGCCCGCACGC
1 GGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGGCTGAGCGCCCGCACGC
* * * *
2479338 TCATTTCATGGGTTGACTT-GGCATACAGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCC
66 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
2479402 CAGTGTAAGATCAGACCAGACCGAGGGTTGTGGGTGCACATGTTGGGCTCGGGCATGTGCTGGTA
131 CAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT-
* * * * ** * *
2479467 CCGTATTTTTTTTTCACCCGAGGCACCATCG-CTAGAGCATCGCCGGAGAACCTGACAGGCGACA
195 GCGTATTTTTTTTT-GCCCGGGGCACCATCGTC-GGAGCATCATCGGAGAACCTGACCGGCGGCA
* * *
2479531 TTGGGGTTCTGATGATTGGGGGGGCGGGGGGGTGTGTGCACATGATGTACGATGGGTGCTGGTAC
258 TTGGGGTTCCGACGATTGGGGGGGCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTAC
* * *
2479596 TT-GCCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCACTTAAAAAGC
323 TTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
2479660 ATTTTAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTT
387 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTT
* * *
2479724 CAAATGATCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAGAAA
451 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAA
* * *
2479789 AATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTAAAAAAAATC
515 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* * *
2479854 TCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGGAAATGAGTCGTCTTGCCATGAAACTTC
580 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
2479919 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
645 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
** *
2479984 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATAAATCCACGGCTTGCGCATCCCGCCTCT
710 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCT
*
2480049 CTGGCCGGCGTAGTGCCCGCCCCCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATT
775 CTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATT
* * * ** * ** * *
2480114 CCTAGTCTAAAATCAGATTGGACCGAGGGTTACGGTGGCAGGATTGGCAACATGCA
840 CCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAACACGCA
* *
2480170 GGGGGGGACCCGACCGATCCCCGACTTGTGCATCCTG-CCCTACTGGCCGGCTGAGCGCCCGCAC
1 -GGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCT-CTAGCCGGCTGAGCGCCCGCAC
** * * *
2480234 GCTCGTTTAATGGGATGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATATGGAGTTCATT
64 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * ** * * * *
2480299 CCCAGTGTAACATCAGACAGGACTGAGGGTTACGGGTGCACATGTTGGGCTCAGGCATGTGCCGA
129 CCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
2480364 TGTCGCACTTTTTTTTGCCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCA
194 TG-CGTATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCA
** * * *
2480429 TTGGGGTTCC-AC-ATAT----TTG-GGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCAGGTA
258 TTGGGGTTCCGACGAT-TGGGGGGGCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTA
*
2480487 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGC
322 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
2480552 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAATGGGGACACTTTTTTC
387 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
2480617 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTTAATGTTTTTGTGCATGCCAACAAAA
452 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAA
* * * *
2480682 ATAGAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAGTTTTAAAAAAATCC
516 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT
* * * *
2480747 CGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTGGTCTTGCCATGAAACTTCA
581 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
2480812 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGGCAGAA
646 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* ** * * *
2480877 ATTTTTAGATGTGCATAAACCCACCATACCACTCTATCGATCCACAGCTTGCACATCCCGCCTCT
711 ATATGAAGATGTGCCTAAACCCACC-TACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCT
* * * *
2480942 CTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATT
775 CTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATT
* * * * ** * ** * *
2481007 TCCAGTCTAAGATCGAACCAAATTGAGGATTGCGATAGCAGGATCGGCAGCACGTA
840 CCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAACACGCA
* * * * * * * * **
2481063 GGGGGGACCCGA-TGATCCCCGGCTTGTGCATCCTACCCCCCTGGTCGGCTAAACGCCTGTGCGC
1 GGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGGCTGAGCGCCCGCACGC
* * *
2481127 TCGTTTCGTGTGTTGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGCATACAGAGTTCATTCC
66 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** * * *
2481191 CATTGTAAGATCGGATTGGACCAAGGGTTGTGGGAGCA-AGTGCTGGGCTCGGGCATGAGCTGGT
131 CAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACA-TGCTGGGCTCGGGCATGTGCTGGT
* * * *
2481255 GCCGTATTTTTTTTTGCCTGGGGCATCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCAT
195 G-CGTATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCAT
*
2481320 TGGGGTTCCGGCGATTGGGGGGGC-GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACT
259 TGGGGTTCCGACGATTGGGGGGGCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACT
* *
2481384 TGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCAT
324 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
2481449 TTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTTAAATGGGGACACTTTTTTCAA
389 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
2481514 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATACCAACAAAAAT
454 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAAT
* * * *
2481579 ACAAGGATCACATTTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
518 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCG
* *
2481644 AACCCTAAAAAGTTT-AGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
583 AACCGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
**
2481708 ATGAAGTTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
647 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
* *
2481773 TATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGCCTCTCT
712 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCT
* *
2481838 GGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAATTGGCTTAGGCATACGAAGTTCATTCC
777 GGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * *
2481903 CAATCTAAGATTAAATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGA-ACGCA
842 CAGTCTAAGATCAAATCAGACCGAGGGTTGCGGCAGCAGGATCGGCA-ACACGCA
* * * * * *
2481957 GGGGGGACCCGACCGATCCCTGGCTTGTGCATCCTGCCCCTCTAGCCGACTAAGCACCAGCACAC
1 GGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGGCTGAGCGCCCGCACGC
* * * *
2482022 TCGTTTCGTGGGTTGACTTAGCCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCG
66 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * *
2482087 CAGTGTCAGGTCGGACCGGACCCAGGGTTGTAGGTGCACATGCTGGACTCGAGCATGTGCTGGTG
131 CAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
2482152 CGATATTTTTTTTTGCCTGGGGCATCAT-GTCGAAGCATCATTGGAGAACCTGACCGGCGGCGTT
196 CG-TATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATT
*
2482216 GGGGTTCCGACGATTGGGGGGGCAGGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACT
260 GGGGTTCCGACGATTGGGGGGGC-GGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACT
* *
2482281 TGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCAT
324 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
2482346 TTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
389 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
2482411 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATA
454 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATA
* * * * *
2482476 CAAGGATCACGTCTACCAAGTGTGGGACCAAATCTTCTTTTGAAAAAATTTTAAAAAAATCTCGA
519 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGA
*
2482541 ACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
584 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* *
2482606 GAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAGAAATA
649 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
** *
2482671 TGAAGATGTGCCTAAACCCATGTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCT-G
714 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGG
* * * * * *
2482735 TCGGCGCAGTGCCCACCCGTCCGCTCGTTTCATCGATTGGCATAGGCATACGGAGTTCATTCCCA
779 CCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCA
** * ** * * *
2482800 GTCTAAGATCGGA-CAGAACTGAGGGTTGCGGCAGCAAAATTGGCAACATGCG
844 GTCTAAGATCAAATCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAACACGCA
* *
2482852 GGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTC-AGGCCGACTGAGCGCCTGCACG
1 GGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTA-GCCGGCTGAGCGCCCGCACG
* *
2482916 CTTGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
65 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
2482981 CTAGTGTAAGATTGGACC-GAGTCGAGGGTTGCT-GGTGCACATGCTGGGCTCGGGCATGTGCTG
130 CCAGTGTAAGATCGGACCGGA-CCGAGGGTTG-TGGGTGCACATGCTGGGCTCGGGCATGTGCTG
* * ** *
2483044 GTGCGGCATTTTTTTTCGCCCGGGGCACCATCACCGGAGCATCATCGGAGACCCTGACCGGCGGC
193 GTGC-GTATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGC
* *
2483109 ATTGGGGTT-CTAGCGATT-GGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
257 ATTGGGGTTCCGA-CGATTGGGGGGGCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGT
*
2483171 ACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
321 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
2483235 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
386 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
2483300 CAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTACCTGAATTTTTTTATGCATGCCAAAAAA
451 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAA
* * * *
2483365 AATACAAGGATCACATCTACCAAGTGTGTGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATC
515 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
** *
2483430 TTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
580 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
2483476 ATAAGATCGG
Statistics
Matches: 2934, Mismatches: 335, Indels: 77
0.88 0.10 0.02
Matches are distributed among these distances:
889 1 0.00
890 136 0.05
891 72 0.02
892 575 0.20
893 310 0.11
894 154 0.05
895 843 0.29
896 406 0.14
897 210 0.07
898 119 0.04
899 108 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
CGTATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTG
GGGTTCCGACGATTGGGGGGGCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAAC
CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCC
GGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAAATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAACACGCA
Found at i:2482974 original size:26 final size:26
Alignment explanation
Indices: 2482938--2482990 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2482928 GTTGACATAG
2482938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2482964 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2482990 G
1 G
2482991 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2484122 original size:699 final size:708
Alignment explanation
Indices: 2482855--2484994 Score: 2329
Period size: 699 Copynumber: 2.9 Consensus size: 708
2482845 ACATGCGGGG
* * *
2482855 GGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCAGGCCGACTGAGCGCCTGCACGCTTG
1 GGGACCCGACCGATCCACGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTTG
* * * *
2482920 TTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAG
66 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCAAG
* * * * **
2482985 TGTAAGATTGGACCGAGTCGAGGGTTGCTGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCGG
131 TGTAAGATGGGACCGA-CCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTAGTGCCA
* * *
2483050 CATTTTTTTTCGCCCGGGGCACCATCACCGGAGCA-TCATCGGAGACCCTGACCGGCGGCATTGG
195 CATTTTTTTT-GCCCGGGGCACCATCGCCGGAGCATTC--CGGAGAACCTGACCGACGGCATTGG
*
2483114 GGTTCTAGCGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
257 GGTTCGA-CGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
**
2483179 CTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
321 CTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT-AAGAGCATTTGAGA
2483244 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
385 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
*
2483309 ACAAAATCCTGTACACTTTGAGTTTTTACCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGG
450 ACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGC-TGCC-AAAAAAATACAAGG
* * * * *
2483374 ATCACATCTACCAAGTGTGTGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCTTAAACCGT
513 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGT
* * * * *
2483439 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTATAAG-ATCG-GAGTTCA-TTCGTAGTC
578 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAT-AGCAT-GAAACTTCACAT-GAAGGC
* ** * * *
2483501 -TAA-G-A-T-CA-G-A-T-C-AG-AT-CGAGGGTT-GC-GGTAGCAGGATCAACA-GCAC-ATA
640 TTAAGGCATTGCATGAATTACAAGCATAAGAGCATTGGCAGGTAGAAAGATCAACATGC-CTAAA
***
2483550 GGGA-
704 CCAAC
* *** * *
2483554 GGGACCCGACCGATCCTCGGCTTACACATCTTGCCCCTCTGGCTGGCTGAGCGCCTGCACG-TTC
1 GGGACCCGACCGATCCACGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTT-
*
2483618 GTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCA
65 GTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCAA
* * * * *
2483683 GTGTAAGATGGGACTGGACCGAGGGTTGCGGGTGCACATACTGGGCTCGAGCGTGTGCTAGTACC
130 GTGTAAGATGGGAC-CGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTAGTGCC
* * *
2483748 ACATTTTTTTTGCCCCGGGCACCATCGCCAGAGCATTGCCGGAGAACCTGACTGACGGCATTGGG
194 ACATTTTTTTTGCCCGGGGCACCATCGCCGGAGCATT-CCGGAGAACCTGACCGACGGCATTGGG
* * * *
2483813 GTTCCGACGATTAGGGGGTGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCTC
258 GTT-CGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
2483878 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACGCCCTTATAGAGCATTTGAGA
322 TTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA-AGAGCATTTGAGA
2483943 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC-TTTTTCAAATGGTC
385 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
* * *
2484007 ACAAAATCCTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCTCACCAACAAAAATACAAGG
450 ACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCT-GCCAA-AAAAATACAAGG
* * **
2484072 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTATGAAAAAATTTTTAAAAAATCTTGAACTAT
513 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGT
* * * *
2484137 AAAATGTTTCAAAAATTGTGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACATGAAGG
578 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA---GTATAG-CATGAAACTTCACATGAAGG
* * * * *
2484202 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGGTAGAAATATGAAG
639 CTTAA-GG--CATTGCATGAA-TTACAAG-CAT---AAGAGCATTGGCA-GGTAGAAAGATCAAC
2484267 ATGTGCCTAAACCAACC
695 A--TGCCTAAACCAA-C
** * * * * * * * *
2484284 TGCCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCTCTGACCGGCGTAATGCCCGCTTGCCC
1 -GGGACCCGACCGATCCACGGCTTGTGCATCCTGCCCCTCTGGCCGGC-TGA-G--CGCCTGCAC
* * *
2484349 GCTTGTTTTGTCA-GTTGGCTTAGGCATACGAAGTTCATT-CCAGTCTAAGATCGGGTCGA-ACT
61 GCTTGTTTCGT-AGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-A-A-C----C-ATAC-
* * * * *
2484411 GAGGGTTGCA-GCAGCAAGATCGGTAGCACGCAGGGGGTGACCCGACCGAGGGTTGTGAGTGCAC
116 G-GAGTT-CATTC--CAAG-T--GTA--A-G-A--TGG-GA-CCGACCGAGGGTTGCGGGTGCAC
* *
2484475 ATGCTAGGCTCGGGCATGTGCTAGTGCCTCATTTTTTTTTTGCCCGGGGCACCATCGCCGGAGCA
166 ATGCTGGGCTCGGGCATGTGCTAGTGCCACA--TTTTTTTTGCCCGGGGCACCATCGCCGGAGCA
*
2484540 -TCACTGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGGCGGGGGGTGTGCGCAC
229 TTC-CGGAGAACCTGACCGACGGCATTGGGG-TTCGACGATT-GGGGGGCGGGGGGTGTGCGCAC
* *
2484604 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTTATCAAACCTCAA
291 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAA
* * *
2484669 GAACTCACACCCCCTTAATGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAATGTG
355 GAACTCACACCCCCTTAA-GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
2484734 TCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
419 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAA
* * *
2484799 TTTTTTTATGGATGCCATAAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTT
484 TTTTTTTAT-GCTGCCA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
2484864 CTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACG
547 CTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
2484929 AGTCGTATTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
612 A---GTATAG-CATGAAACTTCACATGAAGGCTTAA-GG--CATTGCATGAA-TTACAAG-CATA
2484994 A
668 A
2484995 AAATGGCATT
Statistics
Matches: 1217, Mismatches: 139, Indels: 114
0.83 0.09 0.08
Matches are distributed among these distances:
697 3 0.00
698 272 0.22
699 279 0.23
700 4 0.00
701 4 0.00
702 11 0.01
703 4 0.00
705 1 0.00
708 1 0.00
709 1 0.00
710 1 0.00
711 1 0.00
712 1 0.00
714 1 0.00
715 1 0.00
716 2 0.00
718 2 0.00
722 4 0.00
723 2 0.00
725 11 0.01
727 1 0.00
728 5 0.00
731 34 0.03
732 2 0.00
733 1 0.00
734 7 0.01
735 39 0.03
736 4 0.00
737 1 0.00
741 3 0.00
742 2 0.00
743 5 0.00
744 2 0.00
745 3 0.00
746 1 0.00
748 3 0.00
750 1 0.00
751 1 0.00
752 1 0.00
754 2 0.00
755 49 0.04
756 36 0.03
757 185 0.15
758 220 0.18
759 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (708 bp):
GGGACCCGACCGATCCACGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTTG
TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCAAG
TGTAAGATGGGACCGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTAGTGCCAC
ATTTTTTTTGCCCGGGGCACCATCGCCGGAGCATTCCGGAGAACCTGACCGACGGCATTGGGGTT
CGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCTGCCAAAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTT
TCAAAAATCGTGAAAAATAGAAAACGAGTATAGCATGAAACTTCACATGAAGGCTTAAGGCATTG
CATGAATTACAAGCATAAGAGCATTGGCAGGTAGAAAGATCAACATGCCTAAACCAAC
Found at i:2485213 original size:758 final size:755
Alignment explanation
Indices: 2483699--2485213 Score: 2227
Period size: 758 Copynumber: 2.0 Consensus size: 755
2483689 GATGGGACTG
* * *
2483699 GACCGAGGGTTGCGGGTGCACATACTGGGCTCGAGCGTGTGCTAGTACCACATTTTTTTTGCCCC
1 GACCGAGGGTTGCGAGTGCACATACTAGGCTCGAGCATGTGCTAGTACCACATTTTTTTTGCCCC
*
2483764 GGGCACCATCGCCAGAGCATTGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGATTAGGG
66 GGGCACCATCGCCAGAGCATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTAGGG
* * *
2483829 GGTGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTA
131 GGCGGGGGGTGTGCGCACATGATATGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
2483894 TCCCTCATCAAACCTCAAGAACTCACACGCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTG
196 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTA
*
2483959 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCAAATGGTCACAAAATCCTGTACACT
261 CCAGTAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTCAAATGGTCACAAAATCCTGTACACT
* * * *
2484024 TTGAGTTTTTAGCTAAATTTTTTTGTGCTCACCAACAAAAATACAAGGATCACGTCTACCAAGTT
326 TCGAGTTTTTAGCTAAATTTTTTTATGATCACCAACAAAAATACAAGGATCACGTCTACAAAGTT
* * * * *
2484089 TGGGGCCAAAACTCCTTATGAAAAAATTTTTAAAAAATCTTGAACTATAAAATGTTTCAAAAATT
391 TGGGGCCAAAACTCCTTATGAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATC
*
2484154 GTGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
456 GTGAAAAATAGAAAACGAGCCGTATTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* *
2484219 TGAATTTACAAGCCATAAAAATAGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCAACC
521 TGAATTTACAAGCCATAAAAATAGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCAACC
* * **
2484284 TGCCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCTCTGACCGGCGTAATGCCCGCTTGCCC
586 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGACCGGCGTAATGCCCGCCCGCCC
* ** ** ** * **
2484349 GCTTGTTTTGTCAGTTGGCTTAGGCATACGAAGTTCATTCCAGTCTAAGATCGGGTCGAACTGAG
651 ACTCATTTCATCAGTTCACTTAGGCATACGAAGTTCATTCCAGTCTAAGATAGACTCGAACTGAG
* *
2484414 GGTTGCAGCAGCAAGATCGGTAGCACGCAGGGGGTGACCC
716 GGTTGCAGAAGCAAGATCGGCAGCACGCAGGGGGTGACCC
* * * * *
2484454 GACCGAGGGTTGTGAGTGCACATGCTAGGCTCGGGCATGTGCTAGTGCCTCATTTTTTTTTTGCC
1 GACCGAGGGTTGCGAGTGCACATACTAGGCTCGAGCATGTGCTAGTACCACA--TTTTTTTTGCC
* * * *
2484519 CGGGGCACCATCGCCGGAGCA-T-CACTGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTG
64 CCGGGCACCATCGCCAGAGCATTGC-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-
* * *
2484582 GGGGGGCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCC
127 AGGGGGCGGGGGGTGTGCGCACATGATATGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
2484647 CCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTA-ATGAGCATTTGAGATTTTATAGGTT
192 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTATA-GAGCATTTGAGATTTTACAGGTT
* *
2484711 TGCTACCAGTAGCCATTAATGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCCTG
256 TGCTACCAGTAGCCATTAAAGTGTCTAAAATGAGGACAC-TTTTTCAAATGGTCACAAAATCCTG
* * *
2484776 TACACTTCGAGTTTTTAGCTGAATTTTTTTATGGAT-GCCATA-AAAAATACAAGGATCATGTCT
320 TACACTTCGAGTTTTTAGCTAAATTTTTTTAT-GATCACCA-ACAAAAATACAAGGATCACGTCT
* *
2484839 ACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTT
383 ACAAAGTTTGGGGCCAAAACTCCTTATGAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTT
* *
2484904 CCAAAATCGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACATGAAGGCTTAAGGGA
448 CAAAAATCGTGAAAAATAGAAAACGAGCCGTATTGCCATGAAACTTCACATGAAGGCTTAAGGGA
* *
2484969 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGGCAAAAATATGAAGATGTGCCTA
513 CCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGGCAAAAATATGAAGATGTGCCTA
* * * * *
2485034 AACCCACCTACCGCCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCT-AGGCGGCGTAGTGCC
578 AACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGA-CCGGCGTAATGCC
* *
2485098 CGCCCGCCCACTCATTTCATCGGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGA
642 CGCCCGCCCACTCATTTCATCAGTTCACTTAGGCATACGAAGTTCATTCC-AGTCTAAGA-TAGA
* *
2485163 CT-GGACTGAGGGTTGCAGAAGCAGGATCGGCAGCACGCAGGGGG-GACCC
705 CTCGAACTGAGGGTTGCAGAAGCAAGATCGGCAGCACGCAGGGGGTGACCC
2485212 GA
1 GA
2485214 TCGATCCTCG
Statistics
Matches: 677, Mismatches: 72, Indels: 19
0.88 0.09 0.02
Matches are distributed among these distances:
755 45 0.07
756 37 0.05
757 184 0.27
758 358 0.53
759 50 0.07
760 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (755 bp):
GACCGAGGGTTGCGAGTGCACATACTAGGCTCGAGCATGTGCTAGTACCACATTTTTTTTGCCCC
GGGCACCATCGCCAGAGCATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTAGGG
GGCGGGGGGTGTGCGCACATGATATGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCAAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTA
CCAGTAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTCAAATGGTCACAAAATCCTGTACACT
TCGAGTTTTTAGCTAAATTTTTTTATGATCACCAACAAAAATACAAGGATCACGTCTACAAAGTT
TGGGGCCAAAACTCCTTATGAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGCCGTATTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATAGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCAACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGACCGGCGTAATGCCCGCCCGCCC
ACTCATTTCATCAGTTCACTTAGGCATACGAAGTTCATTCCAGTCTAAGATAGACTCGAACTGAG
GGTTGCAGAAGCAAGATCGGCAGCACGCAGGGGGTGACCC
Found at i:2485321 original size:26 final size:26
Alignment explanation
Indices: 2485285--2485340 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
2485275 TGGGTTGACT
2485285 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
2485311 TAAGCATACGGAGTTCATTCCTAGTG
1 TAAGCATACGGAGTTCATTCCCAGTC
2485337 TAAG
1 TAAG
2485341 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:2486212 original size:26 final size:26
Alignment explanation
Indices: 2486183--2486235 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2486173 GTTGACTTAG
2486183 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2486209 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2486235 G
1 G
2486236 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2486316 original size:896 final size:893
Alignment explanation
Indices: 2484449--2489801 Score: 6862
Period size: 895 Copynumber: 6.0 Consensus size: 893
2484439 CGCAGGGGGT
* * * * * * *
2484449 GACCCGACCGAGGGTTGTGAGTGCACATGCTAGGCTCGGGCATGTGCTAGTGCCTCATTTTTTTT
1 GACCGGACCAAGGGTTGCGGGTGCACATGCT-GGGTCGGGCATGTGCTGGTGCCGCATTTTTTTT
* *
2484514 TTGCCCGGGGCACCATCGCCGGAGCATCA-CTGAGAACCTGACCGACGGCATTGGGGTTTC-GAC
65 TTGCCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAG-C
*
2484577 GATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
129 GATT-GGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * * *
2484642 GGTCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTATA
193 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
2484707 GGTTTGCTACCAGTAGCCATTAATGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAAT
258 GGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
2484772 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGGATGCCATA-AAAAATACAAGGATCATG
323 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACG
* *
2484836 TCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAG
387 TCTACCAAGTTTGGGGCCAAAACTCC-TCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAG
* * *
2484901 TTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACATGAAGGCTTAAG
451 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
*
2484966 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGGCAAAAATATGAAGATGTGC
516 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGC
* *
2485031 CTAAACCCACCTACCGCCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTAGG-CGGCGTAGT
581 CTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCTTCTCT-GGCCGGCGTAGT
* * * ** * *
2485095 GCCCGCCCGCCCACTCATTTCATCGGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATT
645 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATT
* * * * * * *
2485160 AGACTGGACTGAGGGTTGCAGAAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCTCGA
710 GGACCGGACCGAGGGTTGCTGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCCCGC
* * *
2485225 TT-TACGCATCCTACCCCTCTGGCTGGCTGAGCGCCCACACGCT-TGTTTCGTGGGTTGACTTAA
775 TTGT--GCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCT-TTTCGTGGGTTGACTTAG
* *
2485288 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCA
837 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
* * * * * *
2485345 GACCGGACCGAGGGTTGTGGGTGCACATGCTGAGATCGGGCATGTGCTGCTGTCGCA-TTTTTGT
1 GACCGGACCAAGGGTTGCGGGTGCACATGCTG-GGTCGGGCATGTGCTGGTGCCGCATTTTTTTT
* ** * * ** * * *
2485409 TCGCTTGGGGCACCATCGCCAGAGCGTCATTGAAGAACCTGACCGACGGCATTGGGGTTCCGGCA
65 TTGCCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCG
*
2485474 ATTGGGGGGGCGAGGGGGGGTGTGCGCACATGATGTGCGTTGGGTGCTGGTACTTGGCCCTTATA
130 ATT-GGGGGGC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * **
2485539 TTGGCCCCCTATCCCTCATCAAACGTTGAGAACTCACACCATCTTAAAGAGCATTTGAGATTTTA
191 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
2485604 CAGGTTTGCTGCCAGTAGCAATTAAAGTGTATGAAATGGGGATACTTTTTTCAAATGGTCACAAA
256 CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
2485669 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCTAACAAAAATACAAGGATCAC
321 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
2485734 GTCTACCAAGTTTGGGGCCAAAACT-C-CT-AAAAAACATTTAAAAAAATCTTGAACAGTAAAAA
386 GTCTACCAAGTTTGGGGCCAAAACTCCTCTGAAAAAA-TTTTAAAAAAATCTTGAACCGTAAAAA
* * * * * *
2485796 GTTTTAAAAATCGTGAAGAATAGAAAATGAGTCGTCTTGCCATTAAATTTCACATGAAGGCTTAA
450 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
*
2485861 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAAAAATATGAAGATGTG
515 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
* * * *
2485926 CCTAAACACGCCTACCACCCTATCGATCCATGGCTTGCGCATCCAGCTTCTCTGGCCGACGTAGT
580 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCTTCTCTGGCCGGCGTAGT
* * * *
2485991 GCCCGCCCACCCGCTCGTTTCGTCGATTGGCTTAGGCAT-CAGAGTTCATTCCTAGTCTAAGATC
645 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATT
* * * * * * * *
2486055 GGACCCGACCGAGAGTTGCTGCAGCAGGATTGGCACCACGCAGAGGGGACCCAACCAATCCCCAG
710 GGACCGGACCGAGGGTTGCTGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCCC-G
* * * * * *
2486120 CTTGTGCATCTTGCCCCTCTGGCCGACTGAGCACCCGTACACTCTTTTCGTGGGTTGACTTAGGC
774 CTTGTGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGC
*
2486185 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCG
839 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
* * * **
2486240 GATCGGACCAAGGGTTACGGGTGGACATGCTAGGGTCAAGCATGTGCTGGTGCCGCATTTTTTTT
1 GACCGGACCAAGGGTTGCGGGTGCACATGCT-GGGTCGGGCATGTGCTGGTGCCGCATTTTTTTT
* * * *
2486305 TTGCCTGGGGCACCATCGCCGAAGCATCACCGGAGAACCTGACTGACGGCATTGTGGTTCCAGC-
65 TTGCCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCG
* * *
2486369 ATTGGGGGGCGGGGGGGCGTGCGCACATGATGTGTGATCGGTGCTGGTACTTGGCCCTTATATTG
130 ATTGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * * * *
2486434 GCCTCCTATCCTTCATCAAACCTTGATAACTCTCACCCCCTTAGAGAGCATTTGAGATTTTACAG
194 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
2486499 GTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAATGGGGACAGTTTTTTCAAATGGTCACAAAACC
259 GTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
2486564 CTGTACACTTCGAGTTTTTAGCTCAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
324 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* ** *
2486629 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAACAATCCCGAACCATAAAAAGTT
389 TACCAAGTTTGGGGCCAAAACTCC-TCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTT
* *
2486693 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATAAAACTTCACATGAAGGCTTAAGGG
453 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
* * * **
2486758 ACCATTGTATGAATTTACAAGTCAT-AAAATGGCGTTGGCATGGCAGAAATATGAAGATGCACCT
518 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCT
* * * * * * * *
2486822 AAACCTACCTACCGCCCTATCGATCCATGGTTTCCGCATCCCACCAT-TCTGGCCGGCATAATGC
583 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC-GCTTCTCTGGCCGGCGTAGTGC
** * * * *
2486886 CCGCATGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTGG
647 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGG
** * * * * *
2486951 ACCAAATCGAGGGTTGC-GACAGCAAGATCGGTAGCTCACAGGAGGGGACCCGATCGATCCCCGG
712 ACCGGACCGAGGGTTGCTG-CAGCAGGATCGGCAGCACGCAGG-GGGGACCCGATCGATCCCC-G
** * * *
2487015 CTTGCACATCCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
774 CTTGTGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGC
* **
2487080 ATAC-GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTGTAAGATTG
839 ATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
* * ** * * * *
2487135 GATCAGACTGAGGGTTACGGGTGCACATGCTGGCTCAGGCATGTGCTTGTGCCGCATTTTTTTTT
1 GACCGGACCAAGGGTTGCGGGTGCACATGCTGGGTCGGGCATGTGCTGGTGCCGCATTTTTTTTT
* * * ** *
2487200 TCGCCCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGA-CGGTGGCATTGGAGTTCCAGCG
66 T-GCCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCG
* *
2487264 ATT-----G-GGGGGGTGTGCACACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGG
130 ATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
2487323 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAG
195 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * ***
2487388 TTTGCTGCTAGTAGCCATTAAAGTGTCCGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
260 TTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
* * * * *
2487453 TGTACATTTTGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACATAAATACAAGGATCATGTCT
325 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * *
2487518 ACTAAGTTTGAGGCCAAAACTCCTTCAGGAAAAATTTTAAAAAAATCCTGAACTGTAAAAAGTTT
390 ACCAAGTTTGGGGCCAAAACTCC-TCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTT
*
2487583 CAAAAATCGTGAAAAATAGAAAAC-AGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
454 CAAAAATCATGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
* *
2487647 ACCATTGTATG-ATTTCACATGCCATAAAAATGGCATTGGCATGGCATAAATATGAAGATGTGCC
518 ACCATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCC
* * ** * * *
2487711 TAAACCCACCTACAACCTTATCGATCCACAGCTTGCGCATCCCGTCTT-TCTGGTCGACGGAGT-
582 TAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG-CTTCTCTGGCCGGCGTAGTG
* * * * *
2487774 ---GCCCG---ACTCGTTTTGTCGTTTGGCTTAGGCATACAGATTTCATTCCCAGTTTAAGATTG
646 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTG
* * * * * * *
2487833 GACCGAACTGAGGGTT-CTGGTAGTAGGATCGGTAGCACACAGGGGGGACCCGGTCGATCCCCGG
711 GACCGGACCGAGGGTTGCT-GCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCCC-G
* *
2487897 CTTGTGC-TCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGC
774 CTTGTGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGC
* * * *
2487961 ATACAGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTACTAGTGTAAGATTA
839 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
** *
2488016 GACCGGACCAAGCATTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTT
1 GACCGGACCAAGGGTTGCGGGTGCACATGCTGGG-TCGGGCATGTGCTGGTGCCGCATTTTTTTT
* * * ** * *
2488081 TTGCCCGGGGCACCATCGTCGGAGCATC-CTCGGAGAACCTAACAGGTGGCATTGGGGTTCCGGG
65 TTGCCCGGGGCACCATCGCCGGAGCATCAC-CGGAGAACCTGACCGACGGCATTGGGGTTCCAGC
*
2488145 GATT-GGGGGC--GGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTG
129 GATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * *
2488207 GACCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAG
194 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
2488272 GTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
259 GTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * **
2488337 CTATACACTTCGAGTTCTTAGCTGAA-TTTTTTACGCATGCCAACAAAAATAC-AGGATCACGTC
324 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
2488400 TACCAAGTTT-GGTCCCAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTT
389 TACCAAGTTTGGGGCCAAAACTCC-TCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTT
* *
2488464 TCAAAAATTATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
453 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
2488529 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCT
518 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCT
* * * * * *
2488594 AAACCCACCTACC-CCCTATCAAACCATGGCTTGTG-ATCCCGCCTCTCTGGCCTGCGTGGTGCC
583 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCTTCTCTGGCCGGCGTAGTGCC
**
2488657 CGCCCGCCCGC-CTGTTTCGTCGGTTGGCTTAGGCATACAGAG-TCATTCCCAGTCTAAGATCAG
648 CGCCCGCCCGCTC-GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGG
* * * ** * * *
2488720 ACTGGACCGACGGTTG-TGGCAGCCGGATCGATAGCACGTA-GGGGGACTCGATCGATCCTCAGC
712 ACCGGACCGAGGGTTGCT-GCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCC-CCGC
** * * * * * * * *
2488783 TTACGCATCCTGCCCCTCTGGCCAGTTGAGCGCCTGCACGTTCGTTTCATTGGTTGACTTAGGCA
775 TTGTGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCA
* *
2488848 TAC-GTAGTTCATTCCCAGTC--AGTATACAGAGTTCATTCCCAGTGTAAGATCA
840 TACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
* * *
2488900 GACTGGACCAAGGGTTGC-GGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACA-TTTTTTT
1 GACCGGACCAAGGGTTGCGGGTGCACATGCTGGG-TCGGGCATGTGCTGGTGCCGCATTTTTTTT
* ** * * * * * *
2488963 TGGGTCAGGGCACCATCGCTGGAGCATCACCGAAAAACCTGACCGACGGCACTGGGGATCCAGCG
65 TTGCCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCG
* *
2489028 ATTGGAGGGGTCGGGGGGTGTTCGCACATGATGTGCGATGGGTGATGGTACTTGGCCCTTATATT
130 ATTGG-GGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
2489093 GGCCCCATATCCTTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
193 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
2489158 AGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
258 GGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
2489223 CCTGTACAGTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACGT
323 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * *
2489288 CTGCCAATTTTGGGGCCAAAACATCTTTTGAAAAAATTTTAAAAAAATATTGAACCGTAAGAAA-
388 CTACCAAGTTTGGGGCCAAAAC-TCCTCTGAAAAAATTTTAAAAAAATCTTGAACCGTAA-AAAG
** * * * *
2489352 TTTTGAAAGTCATGAAAAATAGAAAACAAGTCGTCTTGCCGTGAAACTTCACATGAAGGCTAAAG
451 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
2489417 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGC
516 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGC
* * * * *
2489482 CTAAACCCACCTACCACTCTATCGATCCACGACTTGCGCATCCCG-TCTCTCTGACCGGCATAGT
581 CTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCT-TCTCTGGCCGGCGTAGT
* * *
2489546 GCCCACCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATT
645 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATT
* * * * *
2489611 GGACCGGACCGAGGGTTGC-GACAGCAGTATAGGCAGCATGCAGGGGTGGACCCCACCGATCCCC
710 GGACCGGACCGAGGGTTGCTG-CAGCAGGATCGGCAGCACGCAGGGG-GGACCCGATCGATCCCC
* * *
2489675 GACTTGTGCATCCTACCCCTCTGGCTGGCTGAGTGCCCGTACGCTCATTTT-GTGGGTTGACTTA
773 G-CTTGTGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-TTTTCGTGGGTTGACTTA
* *
2489739 GGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGGAAGATCA
836 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
2489797 GACCG
1 GACCG
2489802 AAGAACCTAA
Statistics
Matches: 3869, Mismatches: 507, Indels: 161
0.85 0.11 0.04
Matches are distributed among these distances:
879 2 0.00
880 17 0.00
881 179 0.05
882 312 0.08
883 140 0.04
884 74 0.02
885 214 0.06
886 122 0.03
887 221 0.06
888 286 0.07
889 118 0.03
890 259 0.07
891 21 0.01
892 309 0.08
893 164 0.04
894 217 0.06
895 533 0.14
896 396 0.10
897 36 0.01
898 2 0.00
899 247 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GACCGGACCAAGGGTTGCGGGTGCACATGCTGGGTCGGGCATGTGCTGGTGCCGCATTTTTTTTT
TGCCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGA
TTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCTTCTCTGGCCGGCGTAGTGCCCGC
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCG
GACCGAGGGTTGCTGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCCCGCTTGTGC
ATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACAGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
Found at i:2487115 original size:26 final size:26
Alignment explanation
Indices: 2487078--2487130 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2487068 GTTGACTTAG
2487078 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
2487104 GCATACGGAGTTCATTGCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2487130 G
1 G
2487131 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2488011 original size:26 final size:26
Alignment explanation
Indices: 2487959--2488011 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
2487949 GTTGACTTAG
*
2487959 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
* *
2487985 GCATAC-GTAGTTCATTACTAGTGTAA
1 GCATACAG-AGTTCATTACCAGTCTAA
2488011 G
1 G
2488012 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:2499608 original size:26 final size:26
Alignment explanation
Indices: 2499556--2499608 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
2499546 GTTGAGTTAG
* * *
2499556 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGACTAA
* *
2499582 GCATACGGAGTTCAATCCTAGAGTAA
1 GCATACGGAGTTCAATCCCAGACTAA
2499608 G
1 G
2499609 ATCGAACCAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGACTAA
Found at i:2499802 original size:855 final size:863
Alignment explanation
Indices: 2498145--2500318 Score: 2668
Period size: 895 Copynumber: 2.5 Consensus size: 863
2498135 GTAGCCATTA
* *
2498145 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGGACACTTCGAGTTTTTAG
1 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAG
* * **
2498210 CTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCACG-TTTGGGGTAAAAA
66 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAA
* * *
2498274 TCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGT-AAAAGTTTCAAAAATCATGAAAAATAGA
131 T-ATTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGA
2498338 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
195 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** * * * *
2498403 CTGTAAAAACGGCATTGGCATGGTAGAAATATGGAGATGTGCCTAAAA-CCACCT-CCCCCCTAT
260 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC-AAAACCCACCTACCACCCTAT
* * * * *
2498466 CGATCCACGGCTTGCGCATCCCT-CCTCTCTAGCCGGCATAGTGCCGGCCCGCCCGCTCGTTTCG
324 CGATCCACGACTTGCGCAT-CCTGCCTCTCT-GGCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCG
* * * * *
2498530 TCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCAGC
387 TCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGACCAGACCAGACCGAGGATTGCAGC
* * * * *
2498595 AGCAGGATCGACAGCATGCAGGGGGGACCCAATCGATCCTCGGCTTGCGCATCCTACCCCTCTGG
451 AACAGGATCGACAGCACGCAGGGGGGACCCAATCGATCCCCAGCTTGCACATCCTACCCCTCTGG
* * * * *
2498660 TCGGCTGAGCGCCCACATGCTCGTTCTGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAATCT
516 CCGACCGAGCGCCCACACGCTCGTTCTGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
* * *
2498725 AAGCATACAAAGTTCATTCCCAGTGTAAGATCGAACCGGACCGAGGGTTACGAGTGCACATGCTG
581 AAGCATACAAAGTTCAATCCCAGAGTAAGATCGAACCAGACCGAGGGTTACGAGTGCACATGCTG
* **
2498790 GGCTCAGGCATGTGCTGGTGCCCTATTTTTTTCGCCCAAAGCACCATCGTCGGAGCATCGTCGGA
646 GGCTCAGGCATGTGCTGGTGCCCTATTTTTTTCGCCCAAAGCACCATCGTCGGACCATCACCGGA
* ** * ** * * *
2498855 GAACCTGATTGGCGGCATTGGGGTTCTGGCGATTGGGAGGGGCGGGGGGTGTGTGCACATGATGT
711 GAACCTAACCGACGGCATTGGGGTTCCAGCGACTGGGAGGGGCGGGGGGTGTGCGCACATAATGT
*
2498920 GCGATGGGTGCTCATACTTGGCCCTTATATTGG-CCCCTATCTCTCATCAAACCTCGAGAACTCA
776 GCGATGGGTGCTCACACTTGGCCCTTATATTGGCCCCCTATC-CTCATCAAACCTCGAGAACTCA
2498984 CA-CCC-C-TT-TA-A-AG-AG-C
840 CACCCCACTTTATAGATAGTAGCC
* *
2499000 -A-T-TC-GAAATGGGGACATTTTTTTCAAATGGTCACAAAATCATGTACACTTCGACTTTTTAG
1 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAG
* * * * *
2499061 CTAAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTTGGGCCAAAAC
66 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAA
* * ** *
2499126 TATTTTTGAAAAAATTTTACAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCTTGAAAAATAGA
131 TA-TTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGA
*
2499191 AAACGAGTCGCCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
195 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
2499256 CCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATC
260 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATC
* **
2499321 GATCCACGACTTGTGCATCCTGCCTCTCTGGTCGATGTAGTGCCCGCCCGTCCGCTCGTTTCGTC
325 GATCCACGACTTGCGCATCCTGCCTCTCTGG-CGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTC
* * *
2499386 GGTTGGCTTAGGCATACAGAGTTCATTCACAGTCTAAGACCAGACCAGACCGAGGATTGTAGTAA
389 GGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGACCAGACCAGACCGAGGATTGCAGCAA
* * ** * * ** * * * *
2499451 TATGATCGGTAGCACGTAGTTGGGGACCCGGTCTATCCCCAGCTTGTACATCCTGCCCCTTTGGC
453 CAGGATCGACAGCACGCAG-GGGGGACCCAATCGATCCCCAGCTTGCACATCCTACCCCTCTGGC
* * * * * *
2499516 CGACCGAGCGCCCGCACGCTCATT-TCGTGTGTTGAGTTAGGCATACGGAGTTTATTCCCAGTCT
517 CGACCGAGCGCCCACACGCTCGTTCT-GTGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
** *
2499580 AAGCATACGGAGTTCAATCCTAGAGTAAGATCGAACCAGACCGAGGGTTAC-AGTGCACATGCTG
581 AAGCATACAAAGTTCAATCCCAGAGTAAGATCGAACCAGACCGAGGGTTACGAGTGCACATGCTG
** * **** *
2499644 GGCTTGGGCATGTGCTGGTGCCGCATTTTTGTTTTCGCCTGGGGTACCATCGTCGGACCATCACC
646 GGCTCAGGCATGTGCTGGTGCC-C-TATTT-TTTTCGCCCAAAGCACCATCGTCGGACCATCACC
* *
2499709 GGAGAACCTAACCGATGGCATTGGGTTTCCAGCGACT-GG-GGGGCGGGGGGTGTGCGCACATAA
708 GGAGAACCTAACCGACGGCATTGGGGTTCCAGCGACTGGGAGGGGCGGGGGGTGTGCGCACATAA
** * * *
2499772 TGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCTCGTCAAACCTTGAGAGCT
773 TGTGCGATGGGTGCTCACACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCGAGAACT
2499837 CACACCCCCTTAAATAGCATTTGAGATTTTATAGATTTGCTGCCAGTAGCC
838 CACA-CCCC------A-C---------TTTATAGA-----T---AGTAGCC
* *
2499888 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
1 ----AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTT
* * *
2499953 TTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
62 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCA
* *
2500018 AAATTATTCTGAAAAAATTTTAAAAAAATCTCGAACTGTAAAAAGTTTAAAAAATCATGAAAAAT
127 AAAATATTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAAT
* *
2500083 AGAAAACCAATCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
192 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
2500148 AAGCCATAAAAATGGCATTGGCAAGGCAGAAATATGAAGATGTGCCAAAACCCACCTACCGCCCT
257 AAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCT
* *
2500213 ATCGATCCA-TAGCTTGCGCAT-CTCGCCTCTCTGGCTGGCGTAGTGCCCGCCCGTTCGCTCGTT
322 ATCGATCCACGA-CTTGCGCATCCT-GCCTCTCTGGC-GGCGTAGTGCCCGCCCGTCCGCTCGTT
*
2500276 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
384 TCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
2500319 CATAAGGAGT
Statistics
Matches: 1123, Mismatches: 137, Indels: 78
0.84 0.10 0.06
Matches are distributed among these distances:
851 98 0.09
852 47 0.04
853 137 0.12
854 162 0.14
855 209 0.19
856 14 0.01
857 57 0.05
865 1 0.00
875 2 0.00
876 2 0.00
877 1 0.00
886 2 0.00
887 2 0.00
888 1 0.00
893 1 0.00
894 5 0.00
895 269 0.24
896 113 0.10
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (863 bp):
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAA
TATTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCG
ATCCACGACTTGCGCATCCTGCCTCTCTGGCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGACCAGACCAGACCGAGGATTGCAGCAACAG
GATCGACAGCACGCAGGGGGGACCCAATCGATCCCCAGCTTGCACATCCTACCCCTCTGGCCGAC
CGAGCGCCCACACGCTCGTTCTGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCA
TACAAAGTTCAATCCCAGAGTAAGATCGAACCAGACCGAGGGTTACGAGTGCACATGCTGGGCTC
AGGCATGTGCTGGTGCCCTATTTTTTTCGCCCAAAGCACCATCGTCGGACCATCACCGGAGAACC
TAACCGACGGCATTGGGGTTCCAGCGACTGGGAGGGGCGGGGGGTGTGCGCACATAATGTGCGAT
GGGTGCTCACACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCGAGAACTCACACCCC
ACTTTATAGATAGTAGCC
Found at i:2500970 original size:738 final size:736
Alignment explanation
Indices: 2499552--2501056 Score: 2193
Period size: 738 Copynumber: 2.0 Consensus size: 736
2499542 GTGTGTTGAG
* * *
2499552 TTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCAATCCTAGAGTAAGATCGAACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCAATCCCAGAGTAAGATCGAACC
* * *
2499617 AGACCGAGGGTTACAGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTGTTTTCGC
66 AGACCGAAGGTTACAGTGCACATGCTGGGCTCGGGCACGTGCTGGTGCCGCATTTTTGTTTTCGC
* * * * *
2499682 CTGGGGTACCATCGTCGGACCATCACCGGAGAACCTAACCGATGGCATTGGGTTTCCAGCGACTG
131 CCGAGGCACCATCGTCGGACAATCACCAGAGAACCTAACCGATGGCATTGGGTTTCCAGCGACTG
* *
2499747 GGGGGCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCC
196 GGGGGCGGGGGGTGTGCGCACATAATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTAGCCCC
* ** * * *
2499812 CTATCCTCGTCAAACCTTGAGAGCTCACACCCCCTTAAATAGCATTTGAGATTTTATAGATTTGC
261 CTATCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGC
*
2499877 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
326 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
*
2499942 ACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAAGGATCACATCTACCAA
391 ACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAAAGATCACATCTACCAA
* *
2500007 GTTTGGGGCCAAAATTATTCTGAAAAAATTTTAAAAAAATCTCGAACTGTAAAAAGTTTAAAAAA
456 GTTTGGGACCAAAATCATTCTGAAAAAATTTTAAAAAAATCTCGAACTGTAAAAAGTTTAAAAAA
*
2500072 TCATGAAAAATAGAAAACCAATCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
521 TCATGAAAAATAGAAAACCAATCGTCTTGCAATGAAACTTCACATGAAGGCTTAAGGGACCATTG
*
2500137 TATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAGAAATATGAAGATGTGCCAAAACCCA
586 TATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAGAAATATGAAGATATGCCAAAACCCA
* * * ***
2500202 CCTACCGCCCTATCGATCCATAGCTTGCGCAT-CTCGCCTCTCTGGCTGGCGTAGTGCCCGCCCG
651 CCTACCACCCCATCGATCCACAGCTTGCGCATCCT-GCCTCTCTGGCCAACGTAGTGCCCGCCCG
*
2500266 -TTCGCTCGTTTC-ATCGGTTGGC
715 CCT-GCTCGTTTCGA-CGGTTGGC
* * * *
2500288 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTT-AATTCCCGGTGTAAGATCGGAT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCAA-TCCCAGAGTAAGATCGAAC
* ** ** *
2500352 CGGATTGAAGGTTATGGGTGCACATGCTGGGCTCGGGCACGTGCTGGTGCTGCA-TTTT-TTTTC
65 CAGACCGAAGGTTA-CAGTGCACATGCTGGGCTCGGGCACGTGCTGGTGCCGCATTTTTGTTTTC
* * * *
2500415 GCCCGAGGCACCATCGTCGGAGAATCACCAGAGAACCTGACCGGTGGCATTGGGGTTTCGA-CGA
129 GCCCGAGGCACCATCGTCGGACAATCACCAGAGAACCTAACCGATGGCATT-GGGTTTCCAGCGA
* * *
2500479 TTGGGGGGCGGGGGGGTGTGCGCATATGAA-GTGCAATGGGTGCTGGTACTTGGCCCTTATATTA
193 CTGGGGGGC-GGGGGGTGTGCGCACAT-AATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTA
**
2500543 GCCCCCTATCCCTCATCAAACCTCAAGAACTTGCACCCCCTTAAAGAGCATTTGAGATTTTACAG
256 GCCCCCTAT-CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
2500608 GTTTGCTGCCAGTAGCCATTAAA-TGTCTGAAATGGGGACACTTTTTTCAAATGGTCCACAAAAT
320 ATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT-CACAAAAT
* * *
2500672 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACGT
384 CCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAAAGATCACAT
* * *
2500737 CTACCAAGTTTGGGACCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCTCGAA-TCGTAAAATG
449 CTACCAAGTTTGGGACCAAAA-TCATTCTGAAAAAATTTTAAAAAAATCTCGAACT-GTAAAAAG
* * * *
2500801 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTTCAATGAAACTTCACATGAAGGCTTAAG
512 TTTAAAAAATCATGAAAAATAGAAAACCAATCGTCTTGCAATGAAACTTCACATGAAGGCTTAAG
* *
2500866 GGACCATTGTATGATTTTCCAAGCCATAAAAATGGCATTGGCAAGGCAGAAATATGAAGATATGC
577 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAGAAATATGAAGATATGC
* *
2500931 CTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCCAACGTAGTG
642 CAAAACCCACCTACCACCCCATCGATCCACAGCTTGCGCATCCTGCCTCTCTGGCCAACGTAGTG
**
2500996 CCCTTCCGCCTGCTCGTTTCGACGGTTGGC
707 CCCGCCCGCCTGCTCGTTTCGACGGTTGGC
* * *
2501026 TTAGGAATACGAAGTTCATTCCTAGTCTAAG
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAG
2501057 ATCAGACTAG
Statistics
Matches: 686, Mismatches: 71, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
735 61 0.09
736 164 0.24
737 194 0.28
738 263 0.38
739 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (736 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCAATCCCAGAGTAAGATCGAACC
AGACCGAAGGTTACAGTGCACATGCTGGGCTCGGGCACGTGCTGGTGCCGCATTTTTGTTTTCGC
CCGAGGCACCATCGTCGGACAATCACCAGAGAACCTAACCGATGGCATTGGGTTTCCAGCGACTG
GGGGGCGGGGGGTGTGCGCACATAATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTAGCCCC
CTATCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
ACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAAAGATCACATCTACCAA
GTTTGGGACCAAAATCATTCTGAAAAAATTTTAAAAAAATCTCGAACTGTAAAAAGTTTAAAAAA
TCATGAAAAATAGAAAACCAATCGTCTTGCAATGAAACTTCACATGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAGAAATATGAAGATATGCCAAAACCCA
CCTACCACCCCATCGATCCACAGCTTGCGCATCCTGCCTCTCTGGCCAACGTAGTGCCCGCCCGC
CTGCTCGTTTCGACGGTTGGC
Found at i:2501240 original size:26 final size:26
Alignment explanation
Indices: 2501188--2501240 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2501178 GTTGATTTAG
*
2501188 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
2501214 GCATACGAAGTTCATTCCCAATGTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2501240 G
1 G
2501241 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2502951 original size:898 final size:893
Alignment explanation
Indices: 2500268--2504632 Score: 5860
Period size: 890 Copynumber: 4.9 Consensus size: 893
2500258 CCCGCCCGTT
* * * *
2500268 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTAAT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** ** * * *
2500333 TCCCGGTGTAAGATCGG-ATCGGATTGAAGGTTATGGGTGCACATGCTGGGCTCGGGCACGTGCT
66 TCCCAATGTAAGATCGGAAT-GGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCT
* * * *
2500397 GGTGCTGCATTTTTTTTCGCCCGAGGCACCATCGTCGGAGAATCACCAGAGAACCTGACCGGTGG
130 GGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGTGG
* * *
2500462 CATTGGGGTTTCGACGATTGGGGGGCGGGGGGGTGTGCGCATATGAAGTGCAATGGGTGCTGGTA
195 CATTGGGGTTTCGACGATT-GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* **
2500527 CTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTTGCACCCCCTTAAAGAGC
259 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
2500592 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TGTCTGAAATGGGGACACTTTTTTC
324 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTC
2500656 AAATGGTCCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
388 AAATGGT-CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
2500721 AATACAAAGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTTGAAAAAATTTTAAAAAAATC
452 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* *
2500786 TCGAATCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTTCAATGAAACTTC
517 TCGAATCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
2500851 ACATGAAGGCTTAAGGGACCATTGTATGATTTTCCAAGCCATAAAAATGGCATTGGCAAGGCAGA
582 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* * *
2500916 AATATGAAGATATGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCTGCCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
* ** ** * *
2500981 CTGGCCAACGTAGTGCCCTTCCGCCTGCTCGTTTCGA-CGGTTGGCTTAGGAATACGAAGTTCAT
712 CTAGCCGGCGTAGTGCCCGCCCGCCTGCTCGTTTC-ATCGGTTGGCTTAGGCATACGGAGTTCAT
* * *
2501045 TCCTAGTCTAAGATCAGACTAGACTGAAGGTTGCGACAGCAGGATCGACAGCATGTAGGGGGGAC
776 TCCCAGTCTAAGATCAGAC-AGACTGAAGGTTGCGACAGCAGGATCGACAGCATATAGAGGGGAC
* * * * *
2501110 CGGATCGATCCCTGGCTTGTACATCCTGCCTCTCTGGCCGGCTGAGCGCCCGCA
840 CGGATCGATCCCCGACTTGTACATCCTGCCCCTCTAGCCGACTGAGCGCCCGCA
* * * *
2501164 CACTCGTTTCATGGGTTGATTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
*** *
2501229 TCCCAATGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTG
66 TCCCAATGTAAGATCGGAATGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTG
* * *
2501294 GTGCCGCATTTTTTTTCGCCCGGGGCACCATC-ACTAGAGCATCGCCAGAGAACCTGACCGGCGG
131 GTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTC-GGAGCATCGCCAGAGAACCTGACCGGTGG
*
2501358 CATT-GGGTTTCCGGCGATT------GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
195 CATTGGGGTTT-CGACGATTGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
2501416 CTTGGCCCTTATATTGGGCCCCTATCTCTCATCAAACCTCAAGAACTCACACCCTCTTAAAAAGC
259 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* * * *
2501481 ATTTGAAATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTAAAATAGGGACACTTCTTTC
324 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT-TTTC
* *
2501546 AAATGGTCCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAA
388 AAATGGT-CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
2501611 AATACAAGGATCACGTCTTCCAAGTTTGGGACCAAAACTCCTTCTGATAAAATTTTAAAAAAATC
452 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* *
2501676 CCGAATCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
517 TCGAATCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
2501741 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TAGGCAG
582 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GGCAG
* * *
2501805 AAATATGAAGATGTGCCCAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCCTC
646 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* * ** * *
2501870 TCTAGCCGGTGTAGTGCCTGCCTACCTGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCAT
711 TCTAGCCGGCGTAGTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * ** **
2501935 TCCTAGTCTAAGATCCGACTGGACTGAGGGTTG-TAGCAGCAGGATCGACAGCATGCAGAAAGGA
776 TCCCAGTCTAAGATCAGAC-AGACTGAAGGTTGCGA-CAGCAGGATCGACAGCATATAGAGGGGA
* * * * * *
2501999 TCGGATCGACCCCCGACTTGTACATCTTGCCTCTCTGGCCGGCTGAGCGCCCGCA
839 CCGGATCGATCCCCGACTTGTACATCCTGCCCCTCTAGCCGACTGAGCGCCCGCA
* * * * *
2502054 CGCTCGTTTCGTGGGTTGATTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATATGGAGTTCAT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
2502119 TCCCAATGTAAGATCGGAATGGACCGAGGGCTACGAGTGCACATGCTGGGCTCGAGCATGTGCTG
66 TCCCAATGTAAGATCGGAATGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTG
* * ** * * * * * * *
2502184 GTGTCGTATTTTTTTTTACCCGGGGCACCATGGTTGGAGCATCGTCGGAGAACCTAATCGGTGAC
131 GTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGTGGC
* * * *
2502249 ATTGGGGTTCCGACGATTATGGGGCGGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGAAC
196 ATTGGGGTTTCGACGATT-GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* ** **
2502314 TTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGATTA
260 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* *
2502379 TTTGAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTACA
325 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT-CA
*
2502444 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAA
389 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * *
2502509 TACAAGGATCACGTTTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAAGTTTCAAAAAAATCC
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAAAATCT
*
2502574 CGAA-CTGTAAAATGTTTCAAAAATCATGAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
518 CGAATC-GTAAAATGTTTCAAAAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
2502638 CTCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAG
581 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
* *
2502703 AAATATGAAGATGTGCCTAAACCTACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGCCTC
646 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* * * *
2502768 TCTAGCCGGCGTAATGCCCGCCCTCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCAT
711 TCTAGCCGGCGTAGTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
* * *
2502833 TCCCAGTCTAAGATCAGATCAGACTGAAGGTTGC-AGCAGCAAGATCGGCAGCACATAGAGGGGA
776 TCCCAGTCTAAGATCAGA-CAGACTGAAGGTTGCGA-CAGCAGGATCGACAGCATATAGAGGGGA
* * *
2502897 CCCGA-CGGATCCCCGATTTG-AGCATCCTGCCCCTCTAGCCGACTGAGTGCCCGCA
839 CCGGATC-GATCCCCGACTTGTA-CATCCTGCCCCTCTAGCCGACTGAGCGCCCGCA
** * *
2502952 CGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGCA-TTTA
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG-AGTTCA
* * * * *
2503016 TTCCTAGTGTAACATTGG-ATCAGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGC
65 TTCCCAATGTAAGATCGGAAT-GGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGC
* * *
2503080 TGGTGTCGCA-TTTTTTTCGCCCGGGGCACCATCGTCGGAG-A--ACC--TG-ACC-GA-CGGT-
129 TGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGTG
* * * * *
2503135 --ATTGGGGTTTTGATGATTGGGGG-GCAGGGGGTGGGCGCACATGATGTCCGATGGGTGCTGGT
194 GCATTGGGGTTTCGACGATTGGGGGCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
2503197 ACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
258 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
2503262 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AATGGGGACACTTTTTC
323 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTC
*
2503326 AAATGGTCACAAAATCCTGTACACATT-GAGTTTTTAGGTGAATTTTTTTGTGCATGCCAACAAA
388 AAATGGTCACAAAATCCTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
2503390 AATACAAGGATCATGTCTACCAATTTTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAAATC
452 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* ** ***
2503455 TCGAATCGTAAAAAGTTTTGAAAATTGGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
517 TCGAATCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
2503520 AAATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAA
582 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* * * **
2503585 AATATTAAGAAGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCAT-CCGCCAGT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
* ** * * * *
2503649 CTGGTTGGCGTAGTGCCCGCCCGCCCGTTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTTATT
712 CTAGCCGGCGTAGTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
** * **
2503714 CCCAGTCTAAGATCAGACCAG-CCCAAGGGTTGCGATAGCAGGATCGGTAGCATGA-AGGAGGGG
777 CCCAGTCTAAGATCAGA-CAGACTGAA-GGTTGCGACAGCAGGATCGACAGCAT-ATA-GAGGGG
* * * *
2503777 ACCTGA-CTGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCTACTGAGCGCCCGCA
838 ACCGGATC-GATCCCCGACTTGTACATCCTGCCCCTCTAGCCGACTGAGCGCCCGCA
* * *
2503833 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCATACGGAGTTCAT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** * * *
2503898 TCCCAATGTAAGATCAGACCGAACTGAGGGTTACGGGTGCACATGCTGGGCTCGAGCATGTGCTG
66 TCCCAATGTAAGATCGGAATGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * *
2503963 GTGCCGCATTTTTTTTTCGCCCAGGGCGCCATCGCCGGAGCATCGTCGGAGAACCTAATCGGTGG
131 GTGCCGCA-TTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGTGG
* * * *
2504028 CATT--GGTTTTGACGATTGGGGGGGAGGGGGGTGTACTCACATGATGTGCGATGGGTGCTGGTA
195 CATTGGGGTTTCGACGATTGGGGGCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
2504091 CTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCT-ATAGAACTCACACCCCCTTAAAGAG
259 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAG
* * * *
2504155 CATTTGTGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCCGAAATGAGGACACTTTTTT
323 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTT
* * ** *
2504220 GAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATGGTTTTGTGCATGCCAAAAAA
387 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
*
2504285 AATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
452 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* * * ** * * * *
2504350 TCAAACCGTAAAAAGTTTTGAAAATCCTAAAAAATAGAAAACGAGTCATGTTGCCATGAAACTTC
517 TCGAATCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
2504415 ACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGACAGA
582 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* * *
2504480 AATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGTGCATCCCACCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
* *
2504545 CTAGCCAGCGTAGTGCCCGCCCGCCTACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
712 CTAGCCGGCGTAGTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
*
2504610 CCCAGTCTAAGATCGGACCAGAC
777 CCCAGTCTAAGATCAGA-CAGAC
2504633 CGAGGGTTAC
Statistics
Matches: 3062, Mismatches: 349, Indels: 115
0.87 0.10 0.03
Matches are distributed among these distances:
879 3 0.00
880 104 0.03
881 319 0.10
882 32 0.01
883 134 0.04
884 20 0.01
885 141 0.05
886 16 0.01
888 1 0.00
889 141 0.05
890 661 0.22
891 12 0.00
892 18 0.01
893 138 0.05
894 16 0.01
895 296 0.10
896 363 0.12
897 225 0.07
898 419 0.14
899 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (893 bp):
CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAATGTAAGATCGGAATGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGTGGC
ATTGGGGTTTCGACGATTGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAA
TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGA
ATCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAG
CCGGCGTAGTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACAGACTGAAGGTTGCGACAGCAGGATCGACAGCATATAGAGGGGACCGGATC
GATCCCCGACTTGTACATCCTGCCCCTCTAGCCGACTGAGCGCCCGCA
Found at i:2508081 original size:26 final size:26
Alignment explanation
Indices: 2508045--2508097 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2508035 GTTGAGTTTG
* *
2508045 GCATACGGAGTTTATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2508071 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2508097 G
1 G
2508098 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2508097 original size:897 final size:897
Alignment explanation
Indices: 2506271--2511185 Score: 6057
Period size: 897 Copynumber: 5.5 Consensus size: 897
2506261 GTTGACTTAG
* * * ** * *
2506271 GCATACGGAGTTCATTCCCAATGTATGATCAAACCAGACCAAGGGTTGGGGGTGCACTTGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * *
2506336 TTCGGGCATGTGCTGGTGTCACA-TTTTTTTTCACCCGGGGCACCATCACCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * *
2506400 GAACCTGACTGGCGACATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGC
131 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGAGGGGGGTGTGCGCACATGATGTGC
** * * * *
2506465 GATGGGTGCTGGTGGTTGGACCTTATATTGGCCCCTTATCCCTCATCAAACCTTGGGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
2506530 CCCCTTTAAAAAGCATTTGAGATTTTACCGGTTTTGCAT-CGAGTAGCCATTAAAGTGTTCTAAA
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGC-TGCCAGTAGCCATTAAAGTG-TCTGAA
* * **
2506594 ATGGCGGACAC-TTTTTC-AATGGTCACAAAATTCCTAGCACACTTCGAG---TTAGCTGAAAGT
323 ATGG-GGACACTTTTTTCAAATGGTCACAAAA-TCCT-GTACACCTCGAGTTTTTAGCTGAATTT
* * * *
2506654 TTTTGTTCATTGCCAACAAAAAATACAAGGATCACATCTACCAAAGTTTAGGGCCAAAACTCCTT
385 TTTTGTGCA-TGCCAAC-AAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAAATCCTT
* * * * *
2506719 CTAAAAAAATTTATTTAAAAAACTCCTGCAGCCGTAAAAAAAGTTTCAAAAAATC-TGAAAAAAT
447 CTGAAAAAA--T-TTTAAAAAAATCCCG-AACCGT--AAAAAGTTT-TAAAAATCATG-AAAAAT
* *
2506783 AG-AAATTGAGTC-TCTTGCCTATGAAACTTCACATGAAGGC-TAAGGGACCGTTGTATGAATTT
504 AGAAAATCGAGTCATCTTGCC-ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
2506845 ACAAGCCATAAGATTGGTA-T-G-ATGGTAGAAATATGAAGATG-GCCT-AA-CCACCTACCACC
568 ACAAGCCATAAAAATGGTATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
** * **
2506904 CTAATCGATTCCACATCTTGCGCATCCCGCCTCTGACCGGACCGGCGTAGTTTCTGCCCGCCCGC
633 CT-ATCGA-TCCACGGCTTGCGCATCCCGCCTCT--CTGG-CCGGCGTAGTGCCTGCCCGCCCGC
* * * *** *
2506969 TTGTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-GGTTGGACTGAG
693 TCG-TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * ***
2507033 GGTTGCGGTAGCAGGATCGGCAGCATGC-AGGGGGGACCC-GACC-ATTCCCAGGCTTCCACATC
757 GGTTGTGGTAGCAGGATCGGCAGCACGCAAGGGGGGACCCAG-CCGA-TCCCCGGCTTGTGCATC
* * ** * * * *
2507095 CTGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGAGTTAGGCTTGCGGAGTT
820 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTT
2507160 TATTCTCAGTCTAA
885 TATTC-CAGTCTAA
** ** *
2507174 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCAAGCATTGCGGGTGTACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
2507239 CTCGAGCATGTGCTGGTGCTGCATTTTTTTTTCGCTCGGGGCACCATTGCCGGAGCATCGCCGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* ** * *
2507304 GAACCGGACCGACGGCATTACGGTTCCGACGATTGGGGCGGTGGAGGGTGTGCGCACATGATGTG
131 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGG-GGAGGGGGGTGTGCGCACATGATGTG
* *
2507369 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2507434 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCAATAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2507499 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTTG
* * * ** *
2507564 TGCATGCCAACAAAAATGCGAGGATCACGTTTAATAAGTTTGGGGCCAAAATTCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
* * * *
2507629 ATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGGA-TCGTC
455 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATCGAGTCATC
2507693 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
520 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2507758 TATTGGCATGGCAAAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
585 TATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * **
2507823 GCGCATCCCACCTCTCTGGCCGGAGTAGTGCCTGCCCGCCCGCTCGTTTCATCTTTTGGCTTAGG
650 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * **
2507888 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGTGGTAGCAAGATTAGCAG
715 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAG
*
2507953 CACGCAAGGGGGGA-CCAGCCGATCCCCGGCTTGTGCATCCGGCCCCTCTGGCCGGCTGAGCGCC
780 CACGCAAGGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
2508017 CGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATTCTCAGTCTAA
845 CGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATTC-CAGTCTAA
* *
2508071 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTAC-GGTGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
2508135 C-AGGCCATGTGCTGGTGCCGC-TTTTTTTTTCGCCCGAGCCACCATTGCTGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * ** * * *
2508198 CAACCTGATCGACGGCATT-TAGTTTCGGCGATTGGGGGGGGGGGGGGGTGTGCGCACATGATGT
131 GAACCTGACCGACGGCATTGGGGTTCCGACGATT--GGGGGGAGGGGGGTGTGCGCACATGATGT
* *
2508262 GCGATTGGTGCTCGTACTTGGCCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * * *
2508326 CACCCCCTTAAAAAGAATTTGAGATTCTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAT
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2508391 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGATTTTTTAGCTGAATATTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTT
* * *
2508456 GTGCATGCCAACAAAAATACAAAGATCACATTTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
*
2508521 AA-TTTAGAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAT-GAGTCA
454 AATTTTA-AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATCGAGTCA
* *
2508584 TGTTGCCATGAAACTTCACATGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAAT
518 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
2508649 GGTATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGC
583 GGTATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
2508714 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG-CTCGCCCGCCCGCTCGTTCCGTCGTTTGGCTT
648 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCT-GCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * **
2508778 AGGCAGACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGACCAA
712 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGG
* * * * *
2508843 CAGCACGTAGGGGGGGACCCAGCCGATCTCCAGCTTGTGCATCCTGCCCCTCTGGCCGGCTTAGC
777 CAGCACGCAAGGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGC
* *
2508908 GCCCGCACGCTAATTTCGTGGGTTGAGTTTGGTATACAGAGTTTATTCCCAGTCTAA
842 GCCCGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATT-CCAGTCTAA
* ** * *
2508965 CCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGCGGGTTGTGGGTGCACATGCTAGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * *
2509030 CACGGGCATGTGCAGGTGCCGTATTTTTTTTT-GCCCGGGGCACCATCGTCGGAGCATCGTTGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * * ** *
2509094 GAAACGGACCGACGGCATTGCGGTTTCGGTGATTGGGGGGCAGGGGGGTGTACGCACATGATGTG
131 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGG-AGGGGGGTGTGCGCACATGATGTG
* * * * *
2509159 -GTATTGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACCCA
195 CG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
2509223 CACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCTAGTAGGCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2509288 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTT
* * *
2509353 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAT-TTTTTGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCTGAAA
* * *
2509417 AAATTTTAAAATAATCCCGAATCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA-CGAGTCA
453 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATCGAGTCA
*
2509481 TCTTGCCAAGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
518 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** * * *
2509546 GGTATTGGCACT-ATTGAAATATGAAGATGTGCCTAAAACAACCTACCACCCTATCGATACACGG
583 GGTATTGGCA-TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * * * * *
2509610 CTTGTGCATCCCGCCTCTCTGGATGGCATAGTGCCCGCCTGCCTGCTCGTTTCGTCGGCTGGCTT
647 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* ** * * ** *
2509675 AGGCATACAGAGTTCATTCCCAATCTAAGATTGGACCGGACTGAAGGTTGTGACAGTAGGATCGG
712 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGG
* * * * * *
2509740 TAGCACGC-AGGGGGGACCCAGTCGATCCCAGACTTGCGCATCCTGCCACTCTGGCCGGCTGAGC
777 CAGCACGCAAGGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGC
* * * *
2509804 G-CC-CA--C--A---C----GTT-CGTTT--CGT--GG-GTTGA---C--T-TAG
842 GCCCGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATTCCAGTCTAA
** * * * *
2509835 GCATATGGAGTTCATTCCCAGTGTAAGATCAAATCGGACCGAGGGTTGCGGGTGCACAAGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * *
2509900 CTCGGGCATGTGCTGGTGTCGCATTTTTTTTTTCGCCCGGGGCACCATCGTCGTAGCATCGTCGG
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGG
* ** * * *
2509965 AGGACCTGACCGACGGCATTGGGGTTCCGGTGATTGTGGCGTGGGGGGTGTGCGCACATGATGTG
130 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGAGGGGGGTGTGCGCACATGATGTG
*
2510030 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2510095 ACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2510160 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
2510225 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCTAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
* * * * **
2510290 ATTTTAAAAAAATCTCGAACCATAAAAAGTTTTGAAATTTGTGAAAAATAGAAAA-CGAGTCATC
455 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATCGAGTCATC
2510354 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
520 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
2510419 CATTGGTGTGGCAGAAATATGAA-ATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTT
585 TATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
2510483 GCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCTGCTCGTTTCATCGATTGGCTTAGG
650 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * *
2510548 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGATTGGTAG
715 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAG
* * **
2510613 CA--CATAGGGGGGACCCAACCGATCCCCGGCTTGTTCATCCTGCCCCTCTGGCTAGCTGAGCGC
780 CACGCA-AGGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGC
** * * * *
2510676 CCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
844 CCGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATTCC-AGTCTAA
* * *** *
2510731 GCATACGGAGTTCATTCCCAGTGTAAGATCAGATTGGACCAAGGGTTGCAGGTGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * *
2510796 CTCGGGCATGTACCGGTGCCACA-TTTTTTTTCACCCGGGGCACCATCCCCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * * *
2510860 GAATCTGACCAACGGCATTGGGGTTTCGATGATTGGGGGGA-GGGGATGTGCGCACATGATGTGC
131 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGAGGGGGGTGTGCGCACATGATGTGC
* * * * * * *
2510924 GCTGGGTTCTAGTACTTAGCCCTTATTTTGGCCCCCTATCCCTCACCAAAGCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2510989 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCTGTAGCCGTTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *** * * *
2511054 GGGACATTTTTTTGAAATGGTCGCCCTAT-C-GATCCGCTTCGAGTTTTTAGCTGAA-TTTTTTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCCTG-TACACCTCGAGTTTTTAGCTGAATTTTTTTG
* *
2511116 TGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAACCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
2511181 ATTTT
455 ATTTT
2511186 CGCTCGGGGC
Statistics
Matches: 3499, Mismatches: 438, Indels: 162
0.85 0.11 0.04
Matches are distributed among these distances:
868 1 0.00
870 278 0.08
871 409 0.12
872 66 0.02
873 1 0.00
874 1 0.00
877 4 0.00
878 1 0.00
879 1 0.00
880 1 0.00
882 4 0.00
883 6 0.00
884 2 0.00
886 2 0.00
887 1 0.00
888 2 0.00
889 4 0.00
890 1 0.00
891 71 0.02
892 31 0.01
893 692 0.20
894 309 0.09
895 82 0.02
896 346 0.10
897 693 0.20
898 27 0.01
899 29 0.01
900 27 0.01
901 7 0.00
902 58 0.02
903 108 0.03
904 107 0.03
905 127 0.04
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (897 bp):
GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGAGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
TTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATCGAGTCATCT
TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT
ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAGC
ACGCAAGGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATTCCAGTCTAA
Found at i:2508408 original size:893 final size:896
Alignment explanation
Indices: 2506271--2511185 Score: 6024
Period size: 893 Copynumber: 5.5 Consensus size: 896
2506261 GTTGACTTAG
* * * * * *
2506271 GCATACGGAGTTCATTCCCAATGTATGATCAAACCAGACCAAGGGTTGGGGGTGCACTTGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
2506336 TTCGGGCATGTGCTGGTGTCACATTTTTTTTCACCCGGGGCACCATCACCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCTTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
2506401 AACCTGACTGGCGACATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGTGTGCGCACATGATGTGCG
** * * * *
2506466 ATGGGTGCTGGTGGTTGGACCTTATATTGGCCCCTTATCCCTCATCAAACCTTGGGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
2506531 CCCTTTAAAAAGCATTTGAGATTTTACCGGTTTTGCAT-CGAGTAGCCATTAAAGTGTTCTAAAA
261 CCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGC-TGCCAGTAGCCATTAAAGTG-TCTGAAA
* * **
2506595 TGGCGGACAC-TTTTTC-AATGGTCACAAAATTCCTAGCACACTTCGAG---TTAGCTGAAAGTT
323 TGG-GGACACTTTTTTCAAATGGTCACAAAA-TCCT-GTACACCTCGAGTTTTTAGCTGAATTTT
* * * *
2506655 TTTGTTCATTGCCAACAAAAAATACAAGGATCACATCTACCAAAGTTTAGGGCCAAAACTCCTTC
385 TTTGTGCA-TGCCAAC-AAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAAATCCTTC
* * * * *
2506720 TAAAAAAATTTATTTAAAAAACTCCTGCAGCCGTAAAAAAAGTTTCAAAAAATC-TGAAAAAATA
447 TGAAAAAA--T-TTTAAAAAAATCCCG-AACCGT--AAAAAGTTT-TAAAAATCATG-AAAAATA
* *
2506784 G-AAATTGAGTC-TCTTGCCTATGAAACTTCACATGAAGGC-TAAGGGACCGTTGTATGAATTTA
504 GAAAATCGAGTCATCTTGCC-ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
2506846 CAAGCCATAAGATTGGTA-T-G-ATGGTAGAAATATGAAGATG-GCCT-AA-CCACCTACCACCC
568 CAAGCCATAAAAATGGTATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * **
2506905 TAATCGATTCCACATCTTGCGCATCCCGCCTCTGACCGGACCGGCGTAGTTTCTGCCCGCCCGCT
633 T-ATCGA-TCCACGGCTTGCGCATCCCGCCTCT--CTGG-CCGGCGTAGTGCCTGCCCGCCCGCT
* * * *** *
2506970 TGTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-GGTTGGACTGAGG
693 CG-TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * * ***
2507034 GTTGCGGTAGCAGGATCGGCAGCATGC-AGGGGGGACCC-GACC-ATTCCCAGGCTTCCACATCC
757 GTTGTGGTAGCAGGATCGGCAGCACGCAAGGGGGGACCCAG-CCGA-TCCCCGGCTTGTGCATCC
* * ** * * * *
2507096 TGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGAGTTAGGCTTGCGGAGTTT
820 TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTT
2507161 ATTCTCAGTCTAA
885 ATTC-CAGTCTAA
* ** ** *
2507174 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCAAGCATTGCGGGTGTACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
2507239 CTCGAGCATGTGCTGGTGCTGCATTTTTTTTTCGCTCGGGGCACCATTGCCGGAGCATCGCCGAA
66 CTCGGGCATGTGCTGGTGCCGC-TTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* ** * *
2507304 GAACCGGACCGACGGCATTACGGTTCCGACGATTGGGGCGGTGGAGGGTGTGCGCACATGATGTG
130 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGG-GGGGGGGGGTGTGCGCACATGATGTG
* *
2507369 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2507434 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCAATAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2507499 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTTG
* * * ** *
2507564 TGCATGCCAACAAAAATGCGAGGATCACGTTTAATAAGTTTGGGGCCAAAATTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
* * * *
2507629 ATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGGA-TCGTC
454 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATCGAGTCATC
2507693 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2507758 TATTGGCATGGCAAAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
584 TATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * **
2507823 GCGCATCCCACCTCTCTGGCCGGAGTAGTGCCTGCCCGCCCGCTCGTTTCATCTTTTGGCTTAGG
649 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * **
2507888 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGTGGTAGCAAGATTAGCAG
714 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAG
*
2507953 CACGCAAGGGGGGA-CCAGCCGATCCCCGGCTTGTGCATCCGGCCCCTCTGGCCGGCTGAGCGCC
779 CACGCAAGGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
2508017 CGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATTCTCAGTCTAA
844 CGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATTC-CAGTCTAA
* * *
2508071 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTAC-GGTGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * * * *
2508135 C-AGGCCATGTGCTGGTGCCGCTTTTTTTTTCGCCCGAGCCACCATTGCTGGAGCATCGTCGGAC
66 CTCGGGCATGTGCTGGTGCCGCTTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAG
* ** * *
2508199 AACCTGATCGACGGCATT-TAGTTTCGGCGATTGGGGGGGGGGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATT--GGGGGGGGGGGGGTGTGCGCACATGATGTG
* *
2508263 CGATTGGTGCTCGTACTTGGCCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
2508327 ACCCCCTTAAAAAGAATTTGAGATTCTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAATT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2508392 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGATTTTTTAGCTGAATATTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2508457 TGCATGCCAACAAAAATACAAAGATCACATTTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
*
2508522 A-TTTAGAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAT-GAGTCAT
454 ATTTTA-AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATCGAGTCAT
* *
2508585 GTTGCCATGAAACTTCACATGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
2508650 GTATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCT
583 GTATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
2508715 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTG-CTCGCCCGCCCGCTCGTTCCGTCGTTTGGCTTA
648 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCT-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * **
2508779 GGCAGACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGACCAAC
712 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGGC
* * * * *
2508844 AGCACGTAGGGGGGGACCCAGCCGATCTCCAGCTTGTGCATCCTGCCCCTCTGGCCGGCTTAGCG
777 AGCACGCAAGGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCG
* *
2508909 CCCGCACGCTAATTTCGTGGGTTGAGTTTGGTATACAGAGTTTATTCCCAGTCTAA
842 CCCGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATT-CCAGTCTAA
* * ** * *
2508965 CCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGCGGGTTGTGGGTGCACATGCTAGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * *
2509030 CACGGGCATGTGCAGGTGCCG-TATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGTTGGA
66 CTCGGGCATGTGCTGGTGCCGCT-TTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * * ** * *
2509094 GAAACGGACCGACGGCATTGCGGTTTCGGTGATTGGGGGGCAGGGGGGTGTACGCACATGATGTG
130 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGG-GGGGGGGTGTGCGCACATGATGTG
* * * * *
2509159 -GTATTGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACCCA
194 CG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
2509223 CACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCTAGTAGGCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2509288 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTT
* * *
2509353 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAT-TTTTTGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCTGAAA
* * *
2509417 AAATTTTAAAATAATCCCGAATCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA-CGAGTCA
452 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATCGAGTCA
*
2509481 TCTTGCCAAGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** * * *
2509546 GGTATTGGCACT-ATTGAAATATGAAGATGTGCCTAAAACAACCTACCACCCTATCGATACACGG
582 GGTATTGGCA-TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * * * * *
2509610 CTTGTGCATCCCGCCTCTCTGGATGGCATAGTGCCCGCCTGCCTGCTCGTTTCGTCGGCTGGCTT
646 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* ** * * ** *
2509675 AGGCATACAGAGTTCATTCCCAATCTAAGATTGGACCGGACTGAAGGTTGTGACAGTAGGATCGG
711 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGG
* * * * * *
2509740 TAGCACGC-AGGGGGGACCCAGTCGATCCCAGACTTGCGCATCCTGCCACTCTGGCCGGCTGAGC
776 CAGCACGCAAGGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGC
* * * *
2509804 G-CC-CA--C--A---C----GTT-CGTTT--CGT--GG-GTTGA---C--T-TAG
841 GCCCGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATTCCAGTCTAA
* * * * *
2509835 GCATATGGAGTTCATTCCCAGTGTAAGATCAAATCGGACCGAGGGTTGCGGGTGCACAAGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * *
2509900 CTCGGGCATGTGCTGGTGTCGCATTTTTTTTTTCGCCCGGGGCACCATCGTCGTAGCATCGTCGG
66 CTCGGGCATGTGCTGGTGCCGC--TTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGG
* ** * * *
2509965 AGGACCTGACCGACGGCATTGGGGTTCCGGTGATTGTGGCGTGGGGGGTGTGCGCACATGATGTG
129 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGTGTGCGCACATGATGTG
*
2510030 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2510095 ACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2510160 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
2510225 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCTAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
* * * * **
2510290 ATTTTAAAAAAATCTCGAACCATAAAAAGTTTTGAAATTTGTGAAAAATAGAAAA-CGAGTCATC
454 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATCGAGTCATC
2510354 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
2510419 CATTGGTGTGGCAGAAATATGAA-ATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTT
584 TATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
2510483 GCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCTGCTCGTTTCATCGATTGGCTTAGG
649 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * *
2510548 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGATTGGTAG
714 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAG
* * **
2510613 CA--CATAGGGGGGACCCAACCGATCCCCGGCTTGTTCATCCTGCCCCTCTGGCTAGCTGAGCGC
779 CACGCA-AGGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGC
** * * * *
2510676 CCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
843 CCGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATTCC-AGTCTAA
* *** *
2510731 GCATACGGAGTTCATTCCCAGTGTAAGATCAGATTGGACCAAGGGTTGCAGGTGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
2510796 CTCGGGCATGTACCGGTGCCACATTTTTTTTCACCCGGGGCACCATCCCCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCTTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * *
2510861 AATCTGACCAACGGCATTGGGGTTTCGATGATT-GGGGGGAGGGGATGTGCGCACATGATGTGCG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGTGTGCGCACATGATGTGCG
* * * * * * *
2510925 CTGGGTTCTAGTACTTAGCCCTTATTTTGGCCCCCTATCCCTCACCAAAGCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
2510990 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCTGTAGCCGTTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *** * * *
2511055 GGACATTTTTTTGAAATGGTCGCCCTAT-C-GATCCGCTTCGAGTTTTTAGCTGAA-TTTTTTGT
326 GGACACTTTTTTCAAATGGTCACAAAATCCTG-TACACCTCGAGTTTTTAGCTGAATTTTTTTGT
* *
2511117 GCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAACCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
2511182 TTTT
455 TTTT
2511186 CGCTCGGGGC
Statistics
Matches: 3495, Mismatches: 441, Indels: 164
0.85 0.11 0.04
Matches are distributed among these distances:
868 1 0.00
870 277 0.08
871 400 0.11
872 74 0.02
873 2 0.00
874 1 0.00
877 4 0.00
878 1 0.00
879 1 0.00
880 1 0.00
882 4 0.00
883 6 0.00
884 2 0.00
886 2 0.00
887 1 0.00
888 2 0.00
889 4 0.00
890 1 0.00
891 71 0.02
892 31 0.01
893 695 0.20
894 305 0.09
895 83 0.02
896 353 0.10
897 684 0.20
898 27 0.01
899 29 0.01
900 27 0.01
901 7 0.00
902 58 0.02
903 107 0.03
904 107 0.03
905 127 0.04
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (896 bp):
GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCTTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAG
AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAT
TTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATCGAGTCATCTT
GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAGCA
CGCAAGGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATTCCAGTCTAA
Found at i:2510741 original size:26 final size:26
Alignment explanation
Indices: 2510705--2510757 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2510695 GTTGACTTAG
*
2510705 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2510731 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2510757 G
1 G
2510758 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2511989 original size:26 final size:26
Alignment explanation
Indices: 2511953--2512005 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2511943 GTTGACTTAG
2511953 GCATACAGAGTACATTCCCAGTCTAA
1 GCATACAGAGTACATTCCCAGTCTAA
* * *
2511979 GCATACTGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTACATTCCCAGTCTAA
2512005 G
1 G
2512006 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTACATTCCCAGTCTAA
Found at i:2514639 original size:26 final size:26
Alignment explanation
Indices: 2514603--2514653 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2514593 TGACTTAGGC
*
2514603 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGAAGTTCATTCCCAGTCTAAGG
*
2514629 ATACGAAGTTCATTCCCAGTGTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
2514654 ATCAAACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGG
Found at i:2517168 original size:895 final size:893
Alignment explanation
Indices: 2513527--2517198 Score: 4565
Period size: 897 Copynumber: 4.1 Consensus size: 893
2513517 CATCCCGCTT
* * * ** *
2513527 GCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
1 GCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGACTGA
** * * * ** * ** * * * ** *
2513592 GGGTTGCGACAATAGGATTAGCAGCACACAGGGGGGACCTGGCCGATCCCCGGCTTACGTGTCTT
66 GGGTTATGGCAGTAGGA-TCGCAGCACGTA-GGGGGACCCGATCGATCCCTGACTTGCGCATCCT
* * * * *
2513657 GCCCCTCTGGCCGGTTGGGCGCCCGCATGCT-ATTTTCGTGGGTTGACTTAGGCACACGGAGTTG
129 GCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCA-TTTCATGGGTTGACTTAGGCATACGGAGTTC
** *
2513721 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGACCGGACCGAGGGTTATGGG
193 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGG
* * * *
2513786 TGCACATGCTGGGCTCGGGCATGCGCTGGTGCCGCATTTTTTTTT-GCTCGGGG---CA----C-
258 TGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGTCG
* ** * *
2513842 ---CATCGCCGGAGAACCCGATTGTCGGCATTGGGGTTCCGACGATTGGGGGGCAGGGGGTGTAC
323 GAGCATCGCCGGAGAACCTGACCGTCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGC
2513904 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
388 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
2513969 TCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA
453 TCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAA
2514034 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
517 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
* * * *
2514099 TAAATTGTTTTT-TGCATGCCAACCAAAATACAAGGATCATGTCTACCAAGCTTGGGG-CAAAAC
582 TAAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA
* *
2514162 TCCTTCTAAAAAAATTATAAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATTGTGAAAAATAG-
646 TCCTTCTAAAAAAATTATAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
2514226 AAACGAGTCGTCTTGCCATGGAACTTCACATGAAGGCTTAA-GGACCATTGTATG-ATTTACAAT
711 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
2514289 CCATAAAAAGTGGCATTTGGCATGCCAGGAAATATGGGAAGATGTGGCCTAAACCCACTTACCAC
776 CCATAAAAA-TGGCA-TTGGCATG-GAAGAAATAT--GAAGATGT-GCCTAAACCCACCTACCAC
* * * * * ** *
2514354 CCTATCGAGCCACAGGCTTTAACGCATTCACGGCTCGCTCTGGCCGGCATAGCGTTCGCCCGCCT
835 CCTATCGATCCAC-GGC-TT-GCGCA-TC-CCG-TCTCTCTGGCCGGCATAGTGCCCGCCCGCCC
* * ** * * *
2514419 GCTCATTTCATCGGTTGGCTTAGGCATAC-ATAGTTCATTCCTAGTCTAAGATTGGACCAAATTG
1 GCTCATTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACTAGACTG
** * * * * *
2514483 AGGGTTACCGTAGTAGGATCAACAGCACGCAGGTGGGCACCCAATCGATCCC-CAGCTTGCGCAT
65 AGGGTTATGGCAGTAGGATC-GCAGCACGTAGG-GGG-ACCCGATCGATCCCTGA-CTTGCGCAT
* * *
2514547 CCTGCCCCTCTGACCGGTTGAGCGCCCGCACTCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
126 CCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
* * * * * *
2514612 TCATTCCCAGTCTAAGGATACGAAGTTCATTCCCAGTGTAAGATCAAACTGGACTGAGGGTTGTA
191 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTG
* *
2514677 GGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGTGCACCATCGT
256 GGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGT
* * * *
2514742 CGGGGAGCGTCGTCGGAGAACCTGACACGATTGGCATTGGGGTT-CGACGATT-GGGGGTGGGGG
321 C--GGAGCATCGCCGGAGAACCTGAC-CG-TCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGG
*
2514805 GTGT-CGCACAATGAATGTGCGAATGGAAGT-CTGGTAACTTTGGCCCTTATATTGGCCCCTTAT
382 GTGTGCGCAC-ATG-ATGTGCG-ATGG--GTGCTGGT-AC-TTGGCCCTTATATTGGCCCCCTAT
*
2514868 CCCTTTCATCAAACCTTTGAGAACTCACACCCC-TAGAAGAGC--TTGAGATTTTAC-AGCCTTT
440 CCC--TCATCAAACC-TCGAGAACTCACACCCCTTA-AAGAGCATTTGAGATTTTACAAG--TTT
* *
2514929 ACTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACCTTTTTCAAATGGTCACAAAATCCTGT
499 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
* * * * *
2514993 ACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCACCAAAAATACAAGGATCATGTCTACC
564 ACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* ** ** * * **
2515058 ATGTTTGGGGCCAAAACGCCTTCTAAAAAAATTATAAAAAAATTTTGAACCTTTAAAAGTTTTGA
629 AAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTATAAAAAAATCCTGAACCGTAAAAAGTTTCAA
* * *
2515123 AAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGGAGGCTTAAGGGACCA
694 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
* * *
2515188 TTGTATGAATTTACAAGGCATAAAAATCGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
759 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAAC
* * *
2515253 CCACCTACCACCCTATCGATTCATGGCTTGCGCATCCCGTCTCTCTGGCAGGCATAGTGCCCGCC
824 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCC
*
2515318 TGCCCC
889 CG-CCC
* *
2515324 GCTCATTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGA
1 GCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGACTGA
** * * ** * *
2515389 GGGTTGGGGTAGTAGGATTGGCAGCACGTAAGGGGGACCCGGCCGAT-CCTCGGCTTACGCATCC
66 GGGTTATGGCAGTAGGA-TCGCAGCACGT-AGGGGGACCCGATCGATCCCT-GACTTGCGCATCC
* * **
2515453 TGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTC
128 TGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
** *** * ** *
2515518 ATTCCCAGTCTAAGCATACGGAGTTCATTCTAAGCACAAGATCAGACCAGAGTGAGGGTTGCGGG
193 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGG
* *
2515583 TGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTTGCCCGGGGCACCATCGTCG
258 TGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGTCG
* * * * *
2515648 AAGCATCGTCGGAGAACCTAACCGAT-GGCATTAGGGTTACGACGATTGGGGGGGCCGAGGGGGT
323 GAGCATCGCCGGAGAACCTGACCG-TCGGCATTGGGGTTCCGACGATT-GGGGGG-CG-GGGGGT
* *
2515712 GTGCGCACATGATGTGCAATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCA
384 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
2515777 AACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAT
449 AACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCAT
* *
2515842 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCCTGTACACTTTGAGTTTTT
514 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
* *
2515907 GGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
579 AGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* ** *
2515972 AATCCTTCTGAAAAAATTA-AAAAATAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAC
644 AATCCTTCTAAAAAAATTATAAAAA-AATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
2516036 AGAAAACGAGTCGTC-TACCATGAAACTTCACATGAAGGCTTAAGGGACTATTGTATGAATTCAC
708 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
2516100 AAGCCATAAAAATGGAATTGGCATGGTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCT
773 AAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
2516165 ATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCTCGCCCGTCC
838 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCC
* * * *
2516221 GCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACTAGA-TCG
1 GCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGACT-G
* * ** *
2516285 AGGGTTGTGGCAGTAGGATCGTAGCACGTAGGGGCAGACCCGATTAATCCCTGACTTGTGCATCC
65 AGGGTTATGGCAGTAGGATCGCAGCACGTAGGGG--GACCCGATCGATCCCTGACTTGCGCATCC
* * * *
2516350 TGCCCCTTTGGCCGATTGAGCGCCCGCACGCTCATTTCATAGGTTCACTTAGGCATACGGAGTTC
128 TGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
* * *
2516415 ATTCCCTA-TCTAAGCATATGGAGTTCATTCCTAGTGTAAGATCAGACCGTACCGAGGGTTGTGG
193 ATTCCC-AGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGG
* * *
2516479 GTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTCACCTGGGGC-CCATC-TC
257 GTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGTC
* * * *
2516542 GGAGCATCACCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACAATTGGGGGGCGGGGGGTGTG
322 GGAGCATCGCCGGAGAACCTGACCGTCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTG
*
2516607 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAAC
387 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
2516672 CTCGAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAAGTTTGTTGCCAGTAGTCATTA
452 CTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTA
* * * *
2516737 AAGTATTTGAAAATGGGGACACTTTTTTCAAATAGTCACAAAATCCTGTACACTTTGAGTTTTTA
516 AAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* * * *
2516802 GCTAAATTTTTTTGTGCATGCCAATAGAAATACAAGGATCACATCTGCCAAGTTTGGGGCCAAAA
580 GCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * *
2516867 ATCCTTCTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
645 ATCCTTCTAAAAAAATTATAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
2516932 AGAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
710 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
2516997 GCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTAAACCCACCTACTACCCTAT
775 GCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * ** *
2517062 CGATCCACGGCTTGCGCATCCCATCTTTCTGGCCGATATAGTGCCCACCCGCCC
840 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCC
* * * * * *
2517116 GCTCATGTCGTTGGGTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGGACTACACTGA
1 GCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGACTGA
2517181 GGGTTATGGCAGTAGGAT
66 GGGTTATGGCAGTAGGAT
2517199 TGGTAGCATG
Statistics
Matches: 2416, Mismatches: 294, Indels: 137
0.85 0.10 0.05
Matches are distributed among these distances:
891 4 0.00
892 161 0.07
893 225 0.09
894 190 0.08
895 271 0.11
896 16 0.01
897 278 0.12
898 199 0.08
899 185 0.08
900 37 0.02
901 17 0.01
902 25 0.01
903 11 0.00
904 217 0.09
905 94 0.04
906 16 0.01
907 35 0.01
908 18 0.01
909 20 0.01
910 33 0.01
911 17 0.01
912 139 0.06
913 98 0.04
914 66 0.03
915 28 0.01
916 16 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGACTGA
GGGTTATGGCAGTAGGATCGCAGCACGTAGGGGGACCCGATCGATCCCTGACTTGCGCATCCTGC
CCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGC
ACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGTCGGAG
CATCGCCGGAGAACCTGACCGTCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
CTAAAAAAATTATAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCC
Found at i:2523229 original size:26 final size:26
Alignment explanation
Indices: 2523177--2523229 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2523167 GTTGACTTAG
*
2523177 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTGTAA
* **
2523203 GCATACGGAGTTCATTCTGAGTGTAA
1 GCATACAGAGTTCATTCCCAGTGTAA
2523229 G
1 G
2523230 ATCGGATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTGTAA
Found at i:2525868 original size:26 final size:26
Alignment explanation
Indices: 2525839--2525891 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2525829 GTTCACTTAT
2525839 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2525865 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2525891 G
1 G
2525892 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2526189 original size:26 final size:26
Alignment explanation
Indices: 2526153--2526205 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2526143 GTTGACTTAG
*
2526153 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2526179 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2526205 G
1 G
2526206 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2527099 original size:26 final size:26
Alignment explanation
Indices: 2527047--2527099 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2527037 GTTAACTGAG
* * *
2527047 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATATGAAGTTCATTCCCACTCTAA
*
2527073 GCATATGAAGTTCATTCCCACTGTAA
1 GCATATGAAGTTCATTCCCACTCTAA
2527099 G
1 G
2527100 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCACTCTAA
Found at i:2527855 original size:897 final size:894
Alignment explanation
Indices: 2526116--2529581 Score: 4839
Period size: 897 Copynumber: 3.9 Consensus size: 894
2526106 CTCATGCCAA
* *
2526116 CTGAGCGCCCACACGCTTGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
1 CTGAGCGCCCGCACGCTTGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
* * * * *
2526181 ATACGGAGTTCATTCCCAGTGTAAGATTGGATCGGACCGAGGGTTACGGGTGCACATGCTGGGCT
66 ATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGAGTGCACATGCTGGGCT
* ** *
2526246 CGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGGCCCCATCGTCGGAACATCACCGGAGAAC
131 CGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGGCACCATCACCGGAGCATCACCGGAGAAC
*
2526311 TTGACCGACGGCATTGGGGTTACCGCGATTGGGGGACGGGGGGTGTGCGCACATGATGTGAAATG
196 CTGACCGACGGCATTGGGGTTACCGCGATTGGGGGACGGGGGGTGTGCGCACATGATGTGAAATG
*
2526376 GGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCC
261 GGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* *
2526441 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTTGCCACTAAAGTGTCTGAAAGGGGGA
326 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAAGGGGGA
*
2526505 CACTTTTTTCAAATGCTAACAAAATCCTGTACATTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT
391 CACTTTTTTCAAATGGTAACAAAATCCTGTACATTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT
*
2526570 GCCAGAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTT
456 GCCA-AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTCTGAAAAAATTT
* *
2526635 TAAAAAAATCCCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
520 TAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
2526700 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
585 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
2526765 GCATAGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
650 GCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
* * * * * * *
2526830 TCTCACTTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
715 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
* * * * * *
2526895 AGAGTTCATTCCCAATCTAAGATTAGACCAGACTGTGGGTTGTGGTAGCAGGATC-AGTAGCACG
780 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGA-TAGCACG
* ** ** * * * *
2526959 CAGGGGGGACCCGGTCGATCCCCAACTTGCGCATTTTACCCTTATGGTCGG
844 CAGGAGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* * * * *
2527010 CTGAGCGCCTGCACGCTTGTTTCATGTGTTAACTGAGGCATATGGAGTTCATTTCC-AGTCTAAG
1 CTGAGCGCCCGCACGCTTGTTTCGTGTGTTGACTTAGGCATACGGAGTTCA-TTCCTAGTCTAAG
* * * * * *
2527074 CATATGAAGTTCATTCCCACTGTAAGATCAGACCGGACCGAGGGTTGCGAGTGTAGATGCTGGGT
65 CATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGAGTGCACATGCTGGGC
* * * ** * * *
2527139 TCGGGCATGTGCTGGTGCCTCATTTTTTTTTCACCCGAGGCACCATTGCCGGAGCGTCTCCGAAG
130 TCGGGCATGTGCTGGTGCCGCA-TTTTTTTT-GCCCGGGGCACCATCACCGGAGCATCACCGGAG
* * * * *
2527204 AACTTGACCGATGGCACTAGGG-TACCGATGATTTGGGGGACGGGGGGTGTGCGCACATGATGTG
193 AACCTGACCGACGGCATTGGGGTTACCG-CGA-TTGGGGGACGGGGGGTGTGCGCACATGATGTG
** * * *
2527268 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTGATCAAACCTCAAGAACTCAC
256 AAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
2527333 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
321 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAAG
* * * *
2527398 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTTTG
386 GGGGACACTTTTTTCAAATGGTAACAAAATCCTGTACATTTCAAGTTTTTAGCTGAATTTTTTTG
* * * * *
2527463 TGCATACCAAAAAAAGTAGAAGGATCATGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAAAA
451 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTCTGAAAAA
* *
2527528 ATTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
516 ATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
2527593 CGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
581 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* **
2527658 ATTGGCATGGTAGAAATATGAAGGTGTGCCTAAACCCGGCTACCACCCTATCGATCCATGGCTTG
646 ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * * * * * * * *
2527723 CGCATCCCTCCTCTCTGGCTGGCATAGAGCCCACCCGCCCGCTTGTTTCTTCGGTTCGCTTAGGC
711 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
* * * *
2527788 ATATGGAGTTCATCCCCAGTCTATGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGC
776 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGATAGC
** * *
2527853 ACGCAGGAGGGATTCGGTCGATCCCCGGCTTGGGCATCCTGCCCCTCTGGCCGA
841 ACGCAGGAGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* * * *
2527907 CTGAGTGCCCGCACACTTGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
1 CTGAGCGCCCGCACGCTTGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
* * * *
2527972 ATACGAAGTTCCTTCCCAGTGTAAGATCGGATCGGACCGAGGGTTGTGGGTGCACATGCTGGGCT
66 ATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGAGTGCACATGCTGGGCT
** * * *
2528037 CAAGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGGCCCCATCACCAGAGCATCGCCGGAGAAC
131 CGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGGCACCATCACCGGAGCATCACCGGAGAAC
* * * * *
2528102 CTAACCGACGGCATTGGGGTTACGGCGATTGGGGGGCAGGGGGTGTGCACACATGATGTGAAATG
196 CTGACCGACGGCATTGGGGTTACCGCGATTGGGGGACGGGGGGTGTGCGCACATGATGTGAAATG
2528167 GGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCAT-AAACCTCAAGAACTCACACCCC
261 GGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* * * * * *
2528231 CTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTACCAGTTGCCACTGAAGCGTTTAAAAGGGGGA
326 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAAGGGGGA
* *
2528296 CATTTTTTTCAAATGGTAACAAAATCCTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
391 CACTTTTTTCAAATGGTAACAAAATCCTGTACATTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
2528361 GCCAACAAAAATACAAGGATCATGTCTACCTAGTTTGGGGCCAAAAATCTTTTTGAAAAAATTTT
456 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTCTGAAAAAATTTT
*** * *
2528426 AAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCA
521 AAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
2528491 TGAAACTTCACATGAAGGCTTAAGGAACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGG
586 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
2528556 CATGGCAGAAATATGAAGATGTGTCTAAACGCACCTACCACCGTATCGATCCATAGCTTGCGCAT
651 CATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT
* * * * ** * * *
2528621 TCCGCCTCTCTAGCTGACGTAGTGCCCGCCCGCCAACTCATTTCGTCAGATGGCTTTGGCATACG
716 CCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACG
* ** * * ** * ** * *
2528686 GAGTTCATTCCTAGTCTAAGATCAGGTC-GAACTGAGGGTGGCAGCAATAGGATTGGCAACATGC
781 GAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGATAGCACGC
* *
2528750 ATGGAGGGACCCGGTC-ATTCCCCGGTTTGCTCATCCTGCCCCTCTGGCCGG
845 A-GGAGGGACCCGGTCGA-TCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* * * * *
2528801 CTGAGCGCCCGTACGCTCGTTTCGTGTGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGC
1 CTGAGCGCCCGCACGCTTGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
* * * * * *
2528866 ATGCGGAGTTCATTCCCAATGTAAGATCGGACCAGATCGAGGGTTCCGAGTGCACATGCTGGGCT
66 ATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGAGTGCACATGCTGGGCT
* * *
2528931 CGGACATGTGCTGGTGCCGTATTTTTTTTTGCCCGGGGCACCATCACCGGAGCATCACTGGAGAA
131 CGGGCATGTGCTGGTGCCGCA-TTTTTTTTGCCCGGGGCACCATCACCGGAGCATCACCGGAGAA
* * **
2528996 CCTGATCGACGGCATTGGGGTT-CTTGCGATTAGGGGG-CGGGGGGTGTGCGCACATGATGTGTG
195 CCTGACCGACGGCATTGGGGTTAC-CGCGATT-GGGGGACGGGGGGTGTGCGCACATGATGTGAA
* *
2529059 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
258 ATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * *
2529124 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGG
323 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAAGGG
* *
2529189 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTCAAGTTTTTAG-TGAATGTTTTTGTG
388 GGACACTTTTTTCAAATGGTAACAAAATCCTGTACATTTCAAGTTTTTAGCTGAATTTTTTTGTG
** * *
2529253 CATGCCAAAAAAAATACAAGGATCATGTCTAATAAGTTTGGGGCCAAAACTCGTTCTGAAAAAAT
453 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTCTGAAAAAAT
* * * *
2529318 TTTAAAAATATCCCAAACTGTAAAAGGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
518 TTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
2529383 CCATGAAACTTCACATGATGGCTTAAGGGACC-GTGATATGAATTTACAAGCCATAAAAATGGCA
583 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTG-TATGAATTTACAAGCCATAAAAATGGCA
* * *
2529447 TTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGC
647 TTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* *
2529512 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGGCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
712 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
2529577 TACGG
777 TACGG
2529582 NNNNNNNNNN
Statistics
Matches: 2249, Mismatches: 306, Indels: 33
0.87 0.12 0.01
Matches are distributed among these distances:
892 1 0.00
893 471 0.21
894 369 0.16
895 493 0.22
896 187 0.08
897 638 0.28
898 90 0.04
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (894 bp):
CTGAGCGCCCGCACGCTTGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
ATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGAGTGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGGCACCATCACCGGAGCATCACCGGAGAAC
CTGACCGACGGCATTGGGGTTACCGCGATTGGGGGACGGGGGGTGTGCGCACATGATGTGAAATG
GGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAAGGGGGA
CACTTTTTTCAAATGGTAACAAAATCCTGTACATTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTCTGAAAAAATTTT
AAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT
CCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
GGAGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
Found at i:2527981 original size:26 final size:26
Alignment explanation
Indices: 2527944--2527996 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2527934 GTTGATTTAG
* *
2527944 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
2527970 GCATACGAAGTTCCTTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2527996 G
1 G
2527997 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2535918 original size:26 final size:26
Alignment explanation
Indices: 2535888--2535940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2535878 GTTGACTTAG
2535888 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2535914 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2535940 G
1 G
2535941 ATTGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2536372 original size:898 final size:884
Alignment explanation
Indices: 2534043--2538418 Score: 5593
Period size: 898 Copynumber: 5.0 Consensus size: 884
2534033 GGTGTGACAC
* * ** *
2534043 AGGGGGGACCCGGCTGATCCCCAGCTTGCCCATCCTACCCCTTTGG-CTGGCTGAGCGCTCGCAC
1 AGGGGGGACCCGGCCGATCCCTAGCTTGTGCATCCTGCCCCTTTGGTC-GGCTGAGCGC-CGCAC
* *
2534107 GTTCGTTTCGTGGGTTGACTT-GGCATATGGAGTTCATTCCCAGTCTAAGTATACGAAGTTCATT
64 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATACG-AGTTCATT
*
2534171 CCCAGTGTAAGATCAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGT
127 -CCAGTGTAAGAT----T-AGACCA-AACGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGT
* * * * * *
2534236 GCTGGTGCCACA-TTTTTTTCACCCGAGGTACCATCATTGGAGCATCACCGAGAACCTGACTGAC
185 GCTGGTG-CACATTTTTTTTCGCCCGGGGCACCATC---CGAGCATC-GCGAGAACCTGACCGAC
*
2534300 GGCATT-GGGATTTCGATGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
245 GGCATTAGGG-TTCCGATGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
2534364 TACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGA
309 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGA
* *
2534429 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTA
373 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
2534494 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTGTTGTGCATGCCAACAA
438 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
*
2534559 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAAT
503 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
* * * * *
2534624 CACGAACCGTATAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTT
568 CTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
2534689 CACATGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
633 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAA
* *
2534754 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGCCTC
698 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* * * ** *
2534819 TCTGGCCGACGTAGTGCCTGCCCGCCCACTCGTTTCGTTGGTTTGCTTAGGCATACAGAGTTCAT
763 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCAT
* * * * * *
2534884 TCCCAGTCTAAGGTCAGATTAGATCGAGGG-T-TG-CAGCAGTAGGATCGGTAGCATGC
828 TCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGACAGC-G-AGGATCGGCAGCACGT
* * * * * * *
2534940 AGGGGGGAACCCGACCGATCCCTTGCTTGTGCGTCCT-ACCCTTCCGGTCGACTGAGCGCTCGTA
1 AGGGGGG-ACCCGGCCGATCCCTAGCTTGTGCATCCTGCCCCTT-TGGTCGGCTGAGCGC-CGCA
* * *
2535004 CGCTCGTTTCGTGGGCTGACTTAGCCATACGGAGTTCATTCCCAGTGTAAGAT-C-AG---A--C
63 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGAGTTCATTC
* * *
2535062 C-----------AGACC--A--AGGGTTGCGGGTGAACATGCTAGGCTCGGGGATGTGCTGGTGC
128 CAGTGTAAGATTAGACCAAACGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * *
2535112 TGCA-TTTTTTTCGCCCGGGGCACCAT-C--G--TCG-GAGAACCTGACCAACGACATTGGGGTT
193 -ACATTTTTTTTCGCCCGGGGCACCATCCGAGCATCGCGAGAACCTGACCGACGGCATTAGGGTT
* * * *
2535170 CCGGTGATTAGGGGTGCGGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTTGCC
257 CCGATGATT--GGG-G-GGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
2535235 CTTATATTGGCCCCCTATCCGTCATTAAACCTTGAGAACTCACACCCCTTTAAAGAGCAATTGAG
318 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAG
*
2535300 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-ATTTTTCAAATGGT
382 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
2535364 CACAAAATCTTGTACACTTTGAGTTTTTCGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
447 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
*
2535429 GATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCG
512 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCG
* * * * *
2535494 TAAAATGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACCTGAAG
577 TAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
* * *
2535559 GCTTAAGGGACCGTTGGATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAAAAATATGAA
642 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAA
* *
2535624 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGCCTCTCTGGCCGG
707 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGG
* * *
2535689 CGTAGTGCCCGCCCACCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
772 CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
*
2535754 AAGATCAGATCGGACCGAGGGTTGTGACAGCGA-GATCGGCAGCACGT
837 AAGATCAGATCAGACCGAGGGTTGTGACAGCGAGGATCGGCAGCACGT
* * *
2535801 AGGGGGGACCCGGCCGATCCCTGGCTTGTGCATCCTGGCCCTCTTGG-CGGCTGAGTGTCCGCAC
1 AGGGGGGACCCGGCCGATCCCTAGCTTGTGCATCCTGCCCCT-TTGGTCGGCTGAGCG-CCGCAC
*
2535865 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
64 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATAC-GAGTTCATT
* * * *
2535930 CCTAGTGTAAGATTGGACCAAACGGAGGGTTGCGGGGGCACATGCTGGGCTCGGTCATATGCTGG
127 CC-AGTGTAAGATTAGACCAAAC-GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
2535995 TGTCATATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTAACCGGCGGCA
190 TG-CACATTTTTTTTCGCCCGGGGCACCAT--CC-GAGCATCG-CG-AGAACCTGACCGACGGCA
*
2536060 TTAGGGTTCCGACGATTGGGGGGGCGGAGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
249 TTAGGGTTCCGATGATT-GGGGGGCGG-GG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
2536125 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCTTTCAAGAGC
311 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGC
* *
2536190 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAATTGGGGACACTTTTTTC
375 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
2536255 AAATGGTCACAAAATCCTATACACTTCGAGTTTTTTGCTGAATTTTTTTATGCATGGCAAAAAAA
440 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
**
2536320 ATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT
505 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT
* * * *
2536385 CGAATCGTAAAAAGTTTCAAAAATTATGAAAAATAAAAAATGTGTCGTCTTGCCATGAAACTTCA
570 CGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
2536450 AATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAA
635 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAA
* *
2536515 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTCGCCTCTC
700 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* *
2536580 TGGCCGGCGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTC
765 TGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTC
** * * * * *
2536645 ATAGTCTAAGATCGGA-CTGGACCAAGGGTTGTGACAGTG-GGATCGACAGCACGT
830 CCAGTCTAAGATCAGATC-AGACCGAGGGTTGTGACAGCGAGGATCGGCAGCACGT
** * * * *
2536699 AGGGGGGACCCGATCGATCCC-CGACTTGTGCATCCTGGCCCTCTGGCCGGCTGAGCGCCCGCAC
1 AGGGGGGACCCGGCCGATCCCTAG-CTTGTGCATCCTGCCCCTTTGGTCGGCTGAGCG-CCGCAC
* *
2536763 GCTCATTTCATGGGTTGACTTAGGCATAC---G---A-----AG--T----T-C-A-TTC---CC
64 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGAGTTCATTCC
* * * * *
2536805 AGTGTAAGATTGGACCAGACGGAGGGTTGCGGGGGCACATGCTAGGCTCGGGCATGTGCTAGTGC
129 AGTGTAAGATTAGACCAAAC-GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * * * *
2536870 -CATTTTTTTTCGCTTGGGGCACCAT---TGC--CG-GAGAACCTAACTGATGGCATTGGGGTTC
193 ACATTTTTTTTCGCCCGGGGCACCATCCGAGCATCGCGAGAACCTGACCGACGGCATTAGGGTTC
*
2536928 CGATGATTGGGGGTG-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTT
258 CGATGATTGGGGG-GCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
2536992 ATATTGGCCACCTATCGCTCATCAAACCCCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATT
321 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATT
* *
2537057 TTACAGGTTTGCTGTCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
385 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
2537122 AAAATCCTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
450 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * * * *
2537187 TACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTTAAAAAAGTCCCAAACCGTAA
515 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAA
* * * *
2537252 AAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACATGAAGGCT
580 AAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* * *
2537317 TAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGGTAGAAATATGAAGAT
645 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGAT
*
2537382 GTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
710 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
* *
2537447 AGTGCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
775 AGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
** * * * * *
2537512 ATTGGACCAGACC-AAGGTTGT-AGTAGC-AGGATCAGTAGCACGT
840 ATCAGATCAGACCGAGGGTTGTGA-CAGCGAGGATCGGCAGCACGT
* ** *
2537555 AGGGGGGAGCCGGCCGATCCCTAGCTTGCACATCCTGCCCCTTTGGTCGGTTGAGCGCCCGCACG
1 AGGGGGGACCCGGCCGATCCCTAGCTTGTGCATCCTGCCCCTTTGGTCGGCTGAGCG-CCGCACG
* * *
2537620 TTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTA
65 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATAC-GAGTTCATT-
* * * *
2537685 CCAGTGTAAGATCAGACCAGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGTTGGT
127 CCAGTGTAAGATTAGACCA-AACGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
* *
2537750 GCCACATTTTTTTTTCGCCCGTGGCACCATCGTCGAAGCATCTTCGCAGAACCTGACCGACGGCA
191 G-CACA-TTTTTTTTCGCCCGGGGCACCATC--CG-AGCATC-GCG-AGAACCTGACCGACGGCA
** *
2537815 TTTA-GGTTCCGGCGATTGGCGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
249 -TTAGGGTTCCGATGATTGG-GGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* **
2537879 TTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACAGTTCCTTAAAGAGCA
312 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCA
* * *
2537943 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACAATTTTTTCA
376 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
2538008 AATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
441 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * *
2538073 TACAAGGATCATGTCTACTAAGTTTGGGCCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCT-
506 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC
* * *
2538137 GAAATCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
571 G-AACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
2538202 CACGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAA
635 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAA
*
2538267 ATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
700 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * * * * *
2538332 TGGCAGGCGTAGTGCCCGCCCGTCTGTTCTTTTCGTC-GATTGGCTTAGGCATCCAGAGTTCATT
765 TGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAG-TTGGCTTAGGCATACAGAGTTCATT
* *
2538396 CCTAGTTTAAGATCAGATCAGAC
829 CCCAGTCTAAGATCAGATCAGAC
2538419 ATAGGGTATG
Statistics
Matches: 3054, Mismatches: 309, Indels: 234
0.85 0.09 0.07
Matches are distributed among these distances:
855 1 0.00
856 98 0.03
857 527 0.17
858 40 0.01
859 36 0.01
860 90 0.03
861 418 0.14
862 157 0.05
863 3 0.00
864 8 0.00
867 3 0.00
868 60 0.02
869 3 0.00
870 22 0.01
871 1 0.00
872 59 0.02
873 7 0.00
874 1 0.00
875 1 0.00
876 3 0.00
877 2 0.00
878 3 0.00
879 1 0.00
880 1 0.00
881 4 0.00
882 55 0.02
883 3 0.00
884 2 0.00
885 21 0.01
886 37 0.01
887 25 0.01
889 2 0.00
890 1 0.00
891 2 0.00
892 2 0.00
893 2 0.00
894 1 0.00
895 484 0.16
896 85 0.03
897 175 0.06
898 582 0.19
899 26 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (884 bp):
AGGGGGGACCCGGCCGATCCCTAGCTTGTGCATCCTGCCCCTTTGGTCGGCTGAGCGCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGAGTTCATTCCAG
TGTAAGATTAGACCAAACGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCACA
TTTTTTTTCGCCCGGGGCACCATCCGAGCATCGCGAGAACCTGACCGACGGCATTAGGGTTCCGA
TGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTT
TCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC
CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
TCAGACCGAGGGTTGTGACAGCGAGGATCGGCAGCACGT
Found at i:2541162 original size:9 final size:9
Alignment explanation
Indices: 2541148--2541172 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
2541138 AAAGGTCTTC
2541148 AGCACCTTT
1 AGCACCTTT
2541157 AGCACCTTT
1 AGCACCTTT
2541166 AGCACCT
1 AGCACCT
2541173 CCAAGGGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.36, G:0.12, T:0.28
Consensus pattern (9 bp):
AGCACCTTT
Found at i:2543713 original size:26 final size:26
Alignment explanation
Indices: 2543683--2543735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2543673 GTTGACTTAG
2543683 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2543709 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2543735 G
1 G
2543736 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2545658 original size:880 final size:883
Alignment explanation
Indices: 2543914--2546052 Score: 3056
Period size: 883 Copynumber: 2.4 Consensus size: 883
2543904 ATGATGTGCC
* * *
2543914 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGAGACATTTTTTTCA
1 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
2543979 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
66 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* ** * * *
2544044 TAAAAGGATCACATCTACCTTGTTTGGGACCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCCC
131 TACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
* * * *
2544109 AAACCGTGAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCGC
196 AAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
2544174 ACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA-TGGCAATGGCAGAA
261 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ATGGAAG-A
* * * *
2544238 AATATGAAGATGTGCCTAAACCCACCAACCACCCTACCGATCAC-CCTTGCGCATCCCGCTCTTC
324 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCACGGCTTGCGAATCCCGCTCTTC
* * * *
2544302 TGCCGACGTAGTGCCGCCCGCCTGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
389 TGCCGACGTAATGCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * ** * * *
2544367 AGTCTAAGATCGAACCAGGCCGAGGGTTGTGGTAGTAGGATCAGCAGCACGCAGGGGGGACCGAC
454 AGTCTAAGATCGAACCAGACCAAGGGTTGCAGCAGCAGGATCAGCAGCACGAAGGGGGGACCGAC
* * * * * *
2544432 CAATCCCCGGCTTGCGCATCCTGACCCTCTAGCTGGCTGAGCGCTCGTACGCTCGTTTCGTGGGT
519 CAATCCCCAGCTTGCGCATCCTGACCCTCTAGCCGGCTGAACACCCGCACGCTCGTTTCGTGGGT
* * **
2544497 TCAGTTAGGCATACGGAGTTCATTCCTAGTCTAAGTAAACGGAGTTCATTCCAAGTGTAAGATTG
584 TCACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAAACGGAGTTCATTCCAAGTGTAAGATCA
* ** * * *
2544562 GACCGACCGAGGGTTACGGGTGCACATGGTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTT
649 GACCAACCGAGGGTTACGGGTGCACATACTGGGCTCAGGCATGTGCTGGTGCCACATTCTTTTTC
* * * ** *
2544627 GCTCGGGGCACCATCGTCGAAGAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGCAGTGGCG
714 GCTCGAGGCACCATCCTCGAAGAACCTAACCGACGGCATTGGGGTTCCGACGATTGGCAGGGGCG
* ** *
2544692 GGGGGGTGTGCGCAAATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
779 AGGGGGTGTGCGCAAATGATGTACGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCC
**
2544757 CTCATCAAAACCTTGAGAACTCACACCCCCTTAAA-AGCA
844 CTCATCAAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* *
2544796 TTTGAGATTTTACA-G-TTGCTACCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCA
1 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
2544859 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
66 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
*
2544924 TACAAGGATCATGTCCACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAATCCC
131 TACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
* * *
2544988 AAACCATAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
196 AAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
2545053 ATGAAGGCTTATGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGTAGAAA
261 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAA
* *
2545118 TATAAAGATGTGCCTAAACCAACCTACCACCCTATCGATCAACGGCTTGCGAATCCCGC-CTCTC
326 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-ACGGCTTGCGAATCCCGCTCT-TC
*
2545182 TGGCCGACGTAATGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
389 T-GCCGACGTAATG-CCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
*
2545247 CCAGTCTAAGATC-AGACC-GAATCAAGGGTTGCAGCAGCAGGATC-GACAGCACGAAGGGGGGA
452 CCAGTCTAAGATCGA-ACCAG-ACCAAGGGTTGCAGCAGCAGGATCAG-CAGCACGAAGGGGGGA
* *
2545309 CCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAACACCCGCACGCTCGTTTC
514 -CCGACCAATCCCCAGCTTGCGCATCCTGACCCTCTAGCCGGCTGAACACCCGCACGCTCGTTTC
* * *
2545374 GTGGGTTGACTTAGGCA-AGCGGAGTTCATTCC-AGTCTAAGCATACGGAGTTCATTCCCAGTGT
578 GTGGGTTCACTTAGGCATA-CGGAGTTCATTCCTAGTCTAAGCAAACGGAGTTCATTCCAAGTGT
** * * **
2545437 AAGATCAGACCAAATTGAGGGTTTCGGTTGCACATACTGGGCTCAGGCATGTGCTGGTGCTGCAT
642 AAGATCAGACC-AACCGAGGGTTACGGGTGCACATACTGGGCTCAGGCATGTGCTGGTGCCACAT
*
2545502 TGCTTTTTCGCTCGAGGCACCATCACT-GGAGAACCTAACCGACGGCATT-GGGTTCCGACGATT
706 T-CTTTTTCGCTCGAGGCACCATC-CTCGAAGAACCTAACCGACGGCATTGGGGTTCCGACGATT
* *
2545565 GG-GGGGGC-AGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCACTTATATTGG
769 GGCAGGGGCGAGGGGGTGTGCGCAAATGATGTACGATGGGTGCTGGTACTTGGCACTTATATTGG
*
2545628 CCCTCTATCCCTCATC-AAACCTCAAGAACTCACACCCCCTTAAAGAGCA
834 CCCCCTATCCCTCATCAAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
*
2545677 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
1 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
2545742 AATGGTCACAAAATCCTGTGCACTTAGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAA
66 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * *
2545807 TACAAGGATCATGTCTACCAAGTGTGGGGCCAAAACTTACTT-TGAAAAAATTTTAAAAAAATCT
131 TACAAGGATCATGTCTACCATGTTTGGGGCCAAAAC-TCCTTCTGAAAAAATTTTAAAAAAATCC
* * * *
2545871 GAAATCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGT-TGTGCCATGAAACTTC
195 CAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT-TGCCATGAAACTTC
* *
2545935 ACATGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAGAAGA
259 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAGA
2546000 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
324 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CACGGCTTGCG
2546053 CATACGGCGT
Statistics
Matches: 1121, Mismatches: 115, Indels: 40
0.88 0.09 0.03
Matches are distributed among these distances:
878 39 0.03
879 127 0.11
880 195 0.17
881 97 0.09
882 151 0.13
883 294 0.26
884 216 0.19
885 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (883 bp):
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
AAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCACGGCTTGCGAATCCCGCTCTTCTG
CCGACGTAATGCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCGAACCAGACCAAGGGTTGCAGCAGCAGGATCAGCAGCACGAAGGGGGGACCGACCA
ATCCCCAGCTTGCGCATCCTGACCCTCTAGCCGGCTGAACACCCGCACGCTCGTTTCGTGGGTTC
ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAAACGGAGTTCATTCCAAGTGTAAGATCAGA
CCAACCGAGGGTTACGGGTGCACATACTGGGCTCAGGCATGTGCTGGTGCCACATTCTTTTTCGC
TCGAGGCACCATCCTCGAAGAACCTAACCGACGGCATTGGGGTTCCGACGATTGGCAGGGGCGAG
GGGGTGTGCGCAAATGATGTACGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCT
CATCAAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
Found at i:2547845 original size:894 final size:893
Alignment explanation
Indices: 2546052--2548778 Score: 3907
Period size: 895 Copynumber: 3.1 Consensus size: 893
2546042 CACGGCTTGC
* ** * *
2546052 GCATACGGCGTTCATTCCCAGTAAAAGATTAGACCGGACCGAGGGTTGTAGCAGCGGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCGGGATTGACA
* * * ** * *
2546117 GTACATAATGGGGGACCAGGTCGATCCCCAGCTTATGCATGCTGCCCCTCTGGCCGGCTGAGCGT
66 GCACGT-ATGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * * * * * * **
2546182 CGGCACACTCGTTTCGTGGGTTGACTTGGGCAAATGGAGTTCATTCCCAGTCTAAGAAAACGGAG
130 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAG
* * * * * *
2546247 TTCATTCCCAGTGTAAGATCGAACCGGACCGGGGGTTACGGGTGCACAAGCTGGGCTTGGGCATG
195 TTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATG
* * * *
2546312 CGCTGTTGTCGCATTTTTTTTCGCCTGGGG---CA-C------CATCGTCGGAGAACCTGACCGG
260 TGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGTGGAGCATCGTCGGAGAACCTGACCGA
* * * *
2546367 CGGCATTGAGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATCATGTGCGATGGGTGCTG
325 CGGCATTGGGGTTTCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
*
2546432 CTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
390 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
2546497 AGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
455 AGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
2546562 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTCTTTTGTGCATGCCAAC
520 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTT-TTTTGTGCATGCCAAC
* * *
2546627 AAAAATACAAGGATCATGTCTAGCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAGTTTTAAAAAA
584 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAA
**
2546692 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTATCTTGCCATGAAAC
648 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
2546757 TTCACATGAAGGCTTAATGGACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCATGGC
713 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
* * *
2546822 AGAAATATGAAGATGTACCTAAACCCACCTGCCACCCTATCGATCCACGACTTGCGCATCCCGTC
778 AGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCAT-CCGCC
* * * * * *
2546887 TCTCTGGCCGACGTAGTGCCAGCCCGTCCGCTCGTTTCGTCGGATAGCTTAG
842 TCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* ** * * *
2546939 GCATACGGAGTTCATTCCTAGTCTAAGATTAGATTGGACTGAGGGTTGTGGCAACAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCGGGATTGACA
*
2547004 GCACGTA-GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
66 GCACGTATGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
2547068 CGCTCGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATGCGGAGT
131 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGT
* * *
2547133 TCATTCCCAGTGTAAGATCGGACCGGACCAAGGGTTGTGGGTGCACATGCTGGGCTCGAGCAAGT
196 TCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGT
* * *
2547198 GCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGATCGA
261 GCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCG-TGGAGCATCGTCGGAGAACCTGACCGA
* *
2547263 CAGCATTGGGGTTTCGACGATT-GGGGGGCGGGGGGTGTACGCACATGATGTGTGATGGGTGCTG
325 CGGCATTGGGGTTTCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
* * * *
2547327 GTACTTGGACCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTGAAG
390 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
** * * *
2547392 AGCATTTGAGATTTTACAATTTTATTGCAAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTT
455 AGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
2547457 TTCAAATGGTCAGAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
520 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACA
* **
2547522 AAAATACAAGGATCACGTCTACCTAGTTTGGGGATAAAACTCCTTCTGAAAAAATTTTAAAAGAA
585 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA-AA
* * *
2547587 TCTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAAGT
649 TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
2547652 TCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGACATGGCA
714 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
*
2547717 AAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCTCGCCT
779 GAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATC-CGCCT
2547782 CTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
843 CTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * * * * *
2547833 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAAGCTTGTGGTAGTGGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCGGGATTGACA
* * ** * *
2547898 GCACGCATGGGGGACTCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCACC
66 GCACGTATGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
2547963 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATAG-GGAG
131 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-GCGGAG
* * ** *
2548027 TTCATTCCCAGCGTAAGATCAGACTAGACCGAGGGTTGCGGGTGCACATTCTGGGCTC-AGGCAT
195 TTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGA-GCAT
* ** *
2548091 GTGCTGGTGCCGTATTTTTTTTCATCTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
259 GTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGT-GGAGCATCGTCGGAGAACCTGACC
* * * * *
2548156 GATGGCATTGGGGTTTCGGCGATTGGGGGGGGGGGGGGGGTGTGCTCACATGATGTGTGATGGAT
323 GACGGCATTGGGGTTTCGACGATT--GGGGGGGCGGGGGGTGTGCGCACATGATGTGTGATGGGT
* * *
2548221 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCTCTTT
386 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
2548286 AAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGGGGACA
451 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACA
* *
2548351 CCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGC
515 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGC
* * * * * *
2548416 CAATAAAAATACAAGGATCACATCCACCAAGTTTAGGGCCAAAAGTCCTTCTAAAAAAATTTTTA
580 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTA
* * *
2548481 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAGCGAGTCGTCTTGCCATG
644 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
2548546 AAACTTCACATGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
709 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
2548611 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
774 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCC
* *
2548676 TGCCTCTCTGGTCGACGTAGTGCCCGCCCGCCCACTAGTTTCATCGGTTGGCTTAG
839 -GCCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * * *
2548732 CCATACGGGGTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTT
2548779 ACGGTAGCAG
Statistics
Matches: 1631, Mismatches: 186, Indels: 34
0.88 0.10 0.02
Matches are distributed among these distances:
885 185 0.11
886 1 0.00
887 58 0.04
888 2 0.00
889 1 0.00
893 5 0.00
894 357 0.22
895 445 0.27
896 40 0.02
898 139 0.09
899 390 0.24
900 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCGGGATTGACA
GCACGTATGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGT
TCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGT
GCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGTGGAGCATCGTCGGAGAACCTGACCGAC
GGCATTGGGGTTTCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
AATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCGCCTCTC
TGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
Found at i:2556195 original size:26 final size:26
Alignment explanation
Indices: 2556166--2556218 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2556156 GTTGACTTAG
2556166 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2556192 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2556218 G
1 G
2556219 ATCGAACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2557051 original size:898 final size:894
Alignment explanation
Indices: 2554911--2557993 Score: 3960
Period size: 908 Copynumber: 3.4 Consensus size: 894
2554901 TTTACAAGCT
2554911 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* **
2554976 GCATGGCAAAAATATGAAGATGTGCCTAAACCCAGCTACCATCCTATCGATCCACGTATTGCGCA
66 GCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGCA
* * * * * * *
2555041 TCGTGCCTCTCTAGCCAGCATGGTGCACGCACACCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
130 TCCTGCCTCTCTAGCCGGCATAGTGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
* * * * *
2555106 AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATGGCAGTAGGATCG-CAGCACAC
195 AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGC
* * * *
2555170 AGGGGGGGACCCGACCGATCACCGCCTTGAGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
260 AAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * **
2555235 GCTCGTTTCGTGGGTTGATTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATATAGAGTTCATT
325 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
2555300 CCCAGTGCAAGATCAGACCGGACTAAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
390 CCCAGTGTAAGATCAGACCAGACTGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * * **
2555365 TGCCGTATTTTTTTTTCGCCTAGGGTACCATCGTCGGAGCATCCACCGAGGAACTTGACTGGTGG
455 TGCTGCATTTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCAACGGA-GAACCTGAC-GACGG
* * * * *
2555430 CATTGGGCTTCCGGCAATTGGGGGGGCGGGTGGGTGTGCACACATGATGTGCGATGGAATGCTGG
518 CATTGGGGTTCCGGCGATTGGGGGGGCGTG-GGGTGTGCGCACATGATGTGCGATGG-GTGCTGG
* * *
2555495 TACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCCAGAACTCACA-CCCTTTGAAGA
581 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACACCCCCTTAAAGA
* *
2555558 GCAATTTGAGAATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTT
645 -CCATTTGAG-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC-TT
* * * *
2555623 TTTTCAAAATGGTCACAAAATCCTGTACACTTTGATTTTTTTTAGCTGAATTTTTGTATGCATGC
707 TTTTC-AAATGGTCACAAAATCCTGTACACTTCGA--GTTTTTAGCTGAATTTTTTTGTGCATGC
** * *
2555688 CAACAAAATAC-AGGATCAAGCATCTAATAAGTTTGGGGCCAAAACT-CTTTTGAATAAATTGTT
769 CAACAAAATACAAGGATCAAG--TCTACCAAGTTTGGGGCCAAAACTCCTTTTCAAAAAATT-TT
* *
2555751 AAAAAAACTCCTGAACCGTAAAAAGTTTCAAATAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
831 AAAAAAA-TCCCGAACCGTAAAAAGTTT--AA-AAAATCGTGAAAAAAAGAAAACGAGTCGTCTT
2555816 GCC
892 GCC
2555819 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TG
1 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
2555883 GCATGGCCAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGTGCA
66 GCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACC-TATCGATCCACGGCTTGCGCA
* * * * *
2555948 TCCGGCCACTCTAGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATAC
130 TCCTGCCTCTCTAGCCGGCATAGTGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
* * * *
2556013 -GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGCT-GCAGAAT-TAGTAGCA
195 AG-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAC-GGTAGCAGGATCGA-CAGCA
** ** * *
2556075 CGCAAGGGGGGACCCGACCGATCCTTGGCTTGCGCATCCTGCCTTTCTGGCCAGCTGAGCACCCG
257 CGCAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* *
2556140 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
322 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * ** * *
2556205 ATTCCCAGTGTAAGATC-GAACCTGACCGAGGGTTGTGGGTGCACATGTTGGGCTCAGGCATGTG
387 ATTCCCAGTGTAAGATCAG-ACCAGACTGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTG
**
2556269 CTGGTGCTGCATTTTTTTCTTCG-CTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATC
451 CTGGTGCTGCATTTTTTT-TTCGCCT-GGGGCACCATCGTCGGAGCATCAACGGAGAACCTGA-C
*
2556333 GACGGCATTGGGGTTCCGGTGATTGGGGGGGCGTGGGGTGTGCGCACATGATGTGCGATGGGTGC
513 GACGGCATTGGGGTTCCGGCGATTGGGGGGGCGTGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
2556398 TGGAACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCATGAGAACTCACACCCCCTTAA
578 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTCACACCCCCTTAA
* * *
2556463 AGACCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTT
642 AGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
2556528 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
707 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
2556593 CAAAAGTACAAGGATCAAGTCTACCAAGTTTGGGGCTAAAACTCCTTTTCAAAAAATTTTAAAAA
772 CAAAA-TACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTTTCAAAAAATTTTAAAAA
*
2556658 AATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCC
836 AATCCCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCC
2556717 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* **
2556782 GCTTGGCCGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGCGCA
66 GCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACC-TATCGATCCACGGCTTGCGCA
* * * *
2556847 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
130 TCCTGCCTCTCTAGCCGGCATAGTGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
* * * ** *
2556912 GGAGTTCATTCCTAGTCTAAGATC-GAATCAAACTGAGGGTTACGGTAGCAGGATCGACAGCAC-
195 AGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACG
* * * *
2556975 CCAGGGGGGGCTCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
259 CAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
2557040 CGCTTGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGTATACGGAGTTCAT
324 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
2557105 TCCAAGTGTAAGATCAGACCAGAATGAGGGTTACAGGTGCACATGCTGGGCTTGGGCATGTGCTG
389 TCCCAGTGTAAGATCAGACCAGACTGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTG
** * * * * *
2557170 GTG-TCGCATTTTTTTTTCGCCTGGGGCACCATCACCAGCGCATCACCGGGGAACCTGACCAGCG
454 GTGCT-GCATTTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCAACGGAGAACCTGACGA-CG
* *
2557234 GCATTGGGGTTCCAGCGA-T---------T-GGG-G-G-GCACATGATGTGCGATAGGTGCTGGT
517 GCATTGGGGTTCCGGCGATTGGGGGGGCGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
2557285 ACTTGGCCCTTATATTGGCCTCCTATCTCTCATCAAACCTTGAGAACTCACACTCCCTCAAAGAG
582 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTCACACCCCCTTAAAGAC
* * *
2557350 CATTTGAGGTTTTATAGGTTTGCTGCCAGTAACCATTAAAGTGTCTAAAATGGGGACACTTTTTT
646 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* **
2557415 CAAATGGTCACAAAATCCTATACAAC-TCGAGTTTTTAGCCAAATTTTTTTGTGCATGCCAACAA
711 CAAATGGTCACAAAATCCTGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-A
* *
2557479 AAATACAAGGAT-AACGTCTACCAAGTTTGGGGCCAAAAATCC--TTCGAAAAAATTTTAGAAAA
774 AAATACAAGGATCAA-GTCTACCAAGTTTGGGGCCAAAACTCCTTTTC-AAAAAATTTTAAAAAA
* *
2557541 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAA-AAAACGAGTCGTCTTGCC
837 ATCCCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAA-AAGAAAACGAGTCGTCTTGCC
*
2557599 ATGAAACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
2557664 ACATGGC-AGAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCATGGCTTGCACA
66 GCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGCA
* * * * ** *
2557728 TCCTGCCTCTCTGGCCGGCATAGTGCCTGGCCACCCGCTCGTTTCGTCGGTTGTATTAGACATAC
130 TCCTGCCTCTCTAGCCGGCATAGTGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
2557793 AGAGTTCATTCCTATTCTAAGATCAGACCGGACTGAGGGTTATGGTAGTAGGATCAACAGCACGC
195 AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGC
* * * * * * *
2557858 AAGGGGGGACCC-AGCTGATCCCCAGCTTGCGCATCCTACCTCTCTGGTCGACTGAGCGCCTGCA
260 AAGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * * * *
2557922 CGCTTGTTTTGT-GG--GA-TGA-GCATACGGAGTTCATTCCTAGTCTAAGTATATGGAGTTCAT
324 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
2557982 TCCTAGTCTAAG
389 TCCCAGTGTAAG
2557994 CATACGGAGT
Statistics
Matches: 1936, Mismatches: 206, Indels: 97
0.86 0.09 0.04
Matches are distributed among these distances:
877 48 0.02
878 2 0.00
879 2 0.00
881 163 0.08
882 206 0.11
883 233 0.12
884 7 0.00
885 1 0.00
886 3 0.00
887 1 0.00
896 3 0.00
897 52 0.03
898 282 0.15
899 171 0.09
900 2 0.00
901 19 0.01
902 63 0.03
903 15 0.01
904 37 0.02
905 7 0.00
906 81 0.04
907 212 0.11
908 298 0.15
909 28 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGCTTGCGCAT
CCTGCCTCTCTAGCCGGCATAGTGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACA
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCA
AGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTGTAAGATCAGACCAGACTGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
GCTGCATTTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCAACGGAGAACCTGACGACGGCAT
TGGGGTTCCGGCGATTGGGGGGGCGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGAGAACTCACACCCCCTTAAAGACCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATACA
AGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTTTCAAAAAATTTTAAAAAAATCCCGAAC
CGTAAAAAGTTTAAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCC
Found at i:2557102 original size:26 final size:26
Alignment explanation
Indices: 2557066--2557116 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2557056 TGACTTAGGC
*
2557066 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCAAGTCTAAGT
* *
2557092 ATACGGAGTTCATTCCAAGTGTAAG
1 ATACAGAGTTCATTCCAAGTCTAAG
2557117 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCAAGTCTAAGT
Found at i:2558019 original size:26 final size:26
Alignment explanation
Indices: 2557940--2558013 Score: 130
Period size: 26 Copynumber: 2.8 Consensus size: 26
2557930 TTGTGGGATG
2557940 AGCATACGGAGTTCATTCCTAGTCTA
1 AGCATACGGAGTTCATTCCTAGTCTA
* *
2557966 AGTATATGGAGTTCATTCCTAGTCTA
1 AGCATACGGAGTTCATTCCTAGTCTA
2557992 AGCATACGGAGTTCATTCCTAG
1 AGCATACGGAGTTCATTCCTAG
2558014 AGTAAGATCG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCTAGTCTA
Found at i:2558781 original size:26 final size:26
Alignment explanation
Indices: 2558745--2558797 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2558735 GTTGACTTAG
2558745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2558771 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2558797 G
1 G
2558798 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2559049 original size:13 final size:14
Alignment explanation
Indices: 2559009--2559049 Score: 57
Period size: 13 Copynumber: 2.9 Consensus size: 14
2558999 ATATTATACG
2559009 AAATACAAAAAAAAT
1 AAATAC-AAAAAAAT
*
2559024 AAATACCAAAAAAT
1 AAATACAAAAAAAT
2559038 -AATACAAAAAAA
1 AAATACAAAAAAA
2559050 GCAAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 11 0.46
14 7 0.29
15 6 0.25
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:2559049 original size:14 final size:15
Alignment explanation
Indices: 2559009--2559049 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
2558999 ATATTATACG
2559009 AAATACAAAAAAAAT
1 AAATACAAAAAAAAT
*
2559024 AAATAC-CAAAAAAT
1 AAATACAAAAAAAAT
2559038 -AATACAAAAAAA
1 AAATACAAAAAAA
2559050 GCAAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 5 0.22
14 12 0.52
15 6 0.26
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (15 bp):
AAATACAAAAAAAAT
Found at i:2559060 original size:19 final size:19
Alignment explanation
Indices: 2559032--2559078 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
2559022 ATAAATACCA
*
2559032 AAAAATAATACAAAAAAAG
1 AAAAATAATAAAAAAAAAG
2559051 CAAAAA-AATAAAAAAAAAG
1 -AAAAATAATAAAAAAAAAG
2559070 AAAAATAAT
1 AAAAATAAT
2559079 TGAGGATGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 5 0.20
19 15 0.60
20 5 0.20
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.11
Consensus pattern (19 bp):
AAAAATAATAAAAAAAAAG
Found at i:2560465 original size:17 final size:17
Alignment explanation
Indices: 2560445--2560511 Score: 66
Period size: 17 Copynumber: 4.0 Consensus size: 17
2560435 CTAAGTTTTT
2560445 AAAACCCCTAAAAATCC
1 AAAACCCCTAAAAATCC
*
2560462 AAAATCCCCT-AAAATTC
1 AAAA-CCCCTAAAAATCC
* *
2560479 AAAACCTCTTAAAATCC
1 AAAACCCCTAAAAATCC
**
2560496 -AAAGTCCTAAAAATCC
1 AAAACCCCTAAAAATCC
2560512 TAAAGACAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
16 16 0.39
17 20 0.49
18 5 0.12
ACGTcount: A:0.49, C:0.30, G:0.01, T:0.19
Consensus pattern (17 bp):
AAAACCCCTAAAAATCC
Found at i:2567159 original size:579 final size:579
Alignment explanation
Indices: 2566052--2567161 Score: 1724
Period size: 579 Copynumber: 1.9 Consensus size: 579
2566042 TATGATCTAG
*
2566052 TTGGCCCTTATAATGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
1 TTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
2566117 TTTGAGATTTTATAGGTTTTGTGAAAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
66 TTTGAGATTTTACAGGTTTTGTGAAAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
* * * *
2566182 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTCATGCCAACAAAAA
131 AATGGTCAAAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * **
2566247 TACAAGGATACGTCTACCAAGTTTGGGGCTAAAACTCCTTTTAAAAAAATTTTAAAAAAAATCCC
196 TACAAGGATACATCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAAAATCCC
* **
2566312 AAACCGTAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
261 AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
2566377 ATGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAATGGCATTGGCACAGTAGAAAT
326 ATGAAGGCTTAAGGGAACATTGCATGAATTTACAAGCCATAAAATGGCATTGGCACAGCAGAAAT
* *
2566442 ATGAAGATATGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTA
391 ATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGCCTCTCTA
* * * * *
2566507 GCCGACGTAGTGCTCGCCCACCTGCTTGTTTCGTCGGTTGGCTTAGGCATACAGGGTTCATTCCC
456 GCCGACATAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
*
2566572 AGTCTAAGATCGGATCGGACCGAGGGTGTGCGCACACGATGTGTGATGGGTGCTGGTAC
521 AATCTAAGATCGGATCGGACCGAGGGTGTGCGCACACGATGTGTGATGGGTGCTGGTAC
* *
2566631 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
1 TTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* ** *
2566696 TTTGGGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
66 TTTGAGATTTTACAGGTTTTG-TGAAAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
*
2566760 AAATGGTCAAAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAAAAAAA
130 AAATGGTCAAAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
*
2566824 ATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTT-GAAAAAATC
195 ATACAAGGAT-ACATCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAAAATC
* * * * *
2566888 CCGAACTGTAAAAAGTTTCAAAAATTATGAAAAATAGAGAACGAGTTGTCTTGCCATGAAACTTC
259 CCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
** **
2566953 ACATGAAGGCTTAAGGGGCCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
324 ACATGAAGGCTTAAGGGAACATTGCATGAATTTACAAGCCAT-AAAATGGCATTGGCACAGCAGA
2567018 AATATGAAGATGA-GCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGCCTC
388 AATATGAAGAT-ATGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGCCTC
* * * * * * *
2567082 TCTGGCTGGCATAGTGCCCGTCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCTT
452 TCTAGCCGACATAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
2567147 TCCCAATCTAAGATC
517 TCCCAATCTAAGATC
2567162 AGACAGGACT
Statistics
Matches: 479, Mismatches: 48, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
578 125 0.26
579 353 0.74
580 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (579 bp):
TTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTTGTGAAAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
AATGGTCAAAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
TACAAGGATACATCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAAAATCCC
AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
ATGAAGGCTTAAGGGAACATTGCATGAATTTACAAGCCATAAAATGGCATTGGCACAGCAGAAAT
ATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGCCTCTCTA
GCCGACATAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
AATCTAAGATCGGATCGGACCGAGGGTGTGCGCACACGATGTGTGATGGGTGCTGGTAC
Found at i:2567325 original size:26 final size:26
Alignment explanation
Indices: 2567289--2567341 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2567279 GTTGACTTAG
2567289 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2567315 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2567341 G
1 G
2567342 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2569087 original size:26 final size:26
Alignment explanation
Indices: 2569051--2569103 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2569041 GTTAACTTAG
2569051 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2569077 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2569103 G
1 G
2569104 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2569983 original size:26 final size:26
Alignment explanation
Indices: 2569947--2569999 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2569937 ATTGACTTAG
*
2569947 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2569973 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2569999 G
1 G
2570000 ATTAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2570612 original size:897 final size:893
Alignment explanation
Indices: 2568180--2581381 Score: 17700
Period size: 896 Copynumber: 14.9 Consensus size: 893
2568170 GTTGACTTAG
* * *
2568180 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCATACTGAGGGTTACGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
2568245 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTGCTCGGGGCACCATCGCCTGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTT-CCCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * *
2568310 ACCTAACCAGCGGCATTTGGGTTTCGGTGATTGGGGGGGCGAGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGG-G-GGGGGGTGTGCGCACATGATGTG
* * ** *
2568375 CAATGGGTGCTGGTACTTGGCCCGTATATTGGATCCCTATCCCTCATCAAACCTCCAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2568440 ACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2568505 GGGGACACTTTTTTCAATTGGACACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
2568570 TGCATGCCAACAAAAATACAAGGATCATGT-TACCAAGTTTGGGCCCAAAACTCCTTCTGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
2568634 GTTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
453 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
2568699 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
2568764 ACTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
2568829 CGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGC
648 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
2568894 ATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACGGAGGGTTGTGGCAGC-AGAATCGACAG
713 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAG-ATCGGCAG
* * * * * *
2568958 CACATAGAGGTGGACCCAGCCGATCCTCGGCTTGCGCATCTTACCCCTCTGGCCGGCTGAGCGCC
777 CACGTAG-GGGGGACCC-GACGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * * * * *
2569023 CGCACGTTCATTCCCTGAGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2569077 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGAGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
2569142 CTCGGGCATGTGCTGGTGCCGCTTTTTTTTTTGCCCAGGGCACCATCACCGGAGCATC-ACTGGA
66 CTCGGGCATGTGCTGGTGCCGC-ATTTTTTTT-CCCGGGGCACCATCACCGGAGCATCGTC-GGA
* * * *
2569206 GAACTTGACCGGCGGCATTGAGGGTTCCGACGATT-GGGGGGCGGGGGGTGTGTGCACATGATGT
128 GAACCTGACCGGCGGCATTG-GGGTTCCGGCGATTGGGGGGGGGGGGGGTGTGCGCACATGATGT
* * *
2569270 GCGATGGGTGCCGGTACTTGGCTCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
2569335 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2569400 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
2569465 GTGCATGCCAA-AAAACATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATTCTG-A
387 GTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAA
* * * * * *
2569528 AAAA-TTTAAAAAAAT-CTGAATCATAAAAAGTTTCAAGAAATCTTGAAAAATAAAAAATGAGTC
450 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAA-AAATCATGAAAAATAGAAAACGAGTC
*
2569591 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
2569656 TGGCATTGGCGCA-GG-AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCAC
579 TGGCATT-G-GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
2569719 GGCTTGCACATCCTGCCTCTCTGGCCAGCGTAGTG-CCGAACCGCCCGCTCGTTTCGTCGATTGG
642 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCCGCCCGCTCGTTTCGTCGGTTGG
* ** **
2569783 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCACCAGTGAGAT
706 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGAT
** * * * * *
2569848 CGGCAGCACACAGAGGGGGACCTGGATGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTT
771 CGGCAGCACGTAG-GGGGGACC-CGACGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * * * * *
2569913 ACCGCCCGCACGCTTGTTTCCTCGATTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
834 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
2569973 GCATACGGAGTTCATTCCCAGTGTAAGATTAGACCAAATCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *** * * *
2570038 CTCGAGCATGTGCTGGTGCCACATTTTTTTCTTTTGAGGCATCATCACCGGAGAATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTT-TCCCGGGGCACCATCACCGGAGCATCGTCGGAGA
* *
2570103 ACCTGACCGGCCGCATTGGGGGTT-CGGCGATTGGGGGGTGGGGAGGGGTGTGTGAGCACATGAT
130 ACCTGACCGGCGGCATT-GGGGTTCCGGCGATT-GGGGG-GGGG-GGGG-GTGTGCGCACATGAT
2570167 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
2570231 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTAG-AGCCAGTAGCCATTAAATTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
2570295 AATGGGGACACTTTTTGCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTCTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
2570360 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * *
2570424 AAAATTTTAAAAAAATCCCGAACCCTAAAAAGCTTCGAAAATCATGAAAAATAGAAAACGAGTCG
450 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
2570489 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
2570554 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGC
580 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** *
2570619 TTGCGCATCCCGCCTCTCTGGCCAACGTAGT--------GCCCGCTCGTTTTGTCGGTTGGCTTA
645 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * * * * * *
2570676 GGCATAGGGAGTTCATTCCCAGTTTAAGATTGGATC-GAACAGAGGGTTGCCGCAGTAGGATCAG
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAAGATCGG
* * * * * * *
2570740 TAGCACGTAGAGGGGTACCCGACCGATCCTCAGCTTGCACATCTTGCCCCTCTGGCCGGCTGAGT
774 CAGCACGTAG-GGGGGACCCGA-CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* * * * * *
2570805 GCCAGCACACTTGTTTCGTGGGTTAATTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
2570862 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACTGGACAGAGGGTTGCGGGTGCAGATGTTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
** * ** *
2570927 CTCAAGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGAGGCACCATCGTCGGAGCATC-ACTGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTC-CC-GGGGCACCATCACCGGAGCATCGTC-GGA
* * * *
2570991 GAACCTGACCGGCGACATTGGGGTTTCGGCGATTGGGGGGTGAGGGGGGTGTGCGCACATGATCT
128 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGG-GGGGGGGGTGTGCGCACATGATGT
**
2571056 ATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
2571121 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTGTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2571186 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
2571251 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTCTGAAAT
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * * *
2571316 AATGTTAAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
452 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
2571381 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
2571446 CATTGGCATGGTAGCAATATGAAGATGTGCCTAAAACCACCTACCAACCTATCGATCCACGGCTT
582 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
2571511 ACGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACTCGTTTTGTCAGTTGGCTTAGG
647 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * **
2571576 CATACGGAGTTCATTCCAAGTCTAAGATCACACCGGA-TCGAGGGTTGTGGCAGCAAGATCGAAA
712 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAAGATCGGCA
* * * * * * * *
2571640 GAACACATA-GGGGCACCCAGTCGAT-CCCAGCTTGTGCATCCTGCCCCTC-GGTCGGCTAAGCA
776 G--CACGTAGGGGGGACCC-GACGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * * *
2571702 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
838 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2571758 GCATCCGGAGTTCATTGCTAGTGTAAGATCGGACCAGATCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
** * * ** *
2571823 CTTAGGCATGTGCTGGTGCTGTATTTTTTTTCGCCCGGGGCATAATCACCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTT--CCCGGGGCACCATCACCGGAGCATCGTCGGAG
* * ** *
2571888 AACCTGACCGGTGGCATTGGGGTTCCGGTGATTAGGGGGCAGGGGGGGTGTGCGCAGATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATT-GGGGGGGGGGGGGGTGTGCGCACATGATGTG
* * * *
2571953 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCCCATGAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2572018 TCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2572083 GGGGACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTTGAGTTTTTAGCTGAAATTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2572148 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAACTCCTTATG-AAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCTGAAAA
*** * *
2572212 AATTTTAAAAAAATCTTAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGGAAACGAGTCGTC
452 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
2572277 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *** * * * *
2572342 CATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCAACTACCACTGAATTGATCTACAGCTC
582 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * *
2572407 GCGCATCCATCCTCTCTGGCCGGCGTAATGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
647 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
2572472 CATACGAAGTTCATTCCTAGTCTAAGATCAGACCAAACTGAGGGTTACAGCAGTAGGATTGGCAG
712 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATCGGCAG
* * * *
2572537 CATGTAGGGGGGGACCCAACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGTGCC
777 CACGTA-GGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * * * *
2572602 CGCACGTTTGTTTCATGGGTTGACTTGGGCATACAGAGTTCATT-CCTGTCTAA
840 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2572655 GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGCGTTGCAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * ** ** *
2572720 CACGGGCATGTGCTTGTGCCGTATTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTT-CCCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * *
2572785 ACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGTGCG-GCACATGATGTGCG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGCG
*
2572848 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
2572913 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
2572978 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
2573043 CATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTTCTGAAAAAA
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAA
* * * *
2573108 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTAGTCTT
454 TTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
2573173 GCCATGAAATTTCACATGAAGGCTTAAGGGACCAATGTCTGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
2573238 TTGGCACGGAAAAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCTACGGCTTGC
584 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * * * * *
2573303 GGATCCTACCTTTCTGGTCGGCTTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTAAAGCA
649 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
2573368 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGTCTAAGGGTTGCAGCAACAAGATCAGCAGCA
714 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATCGGCAGCA
* * ** *
2573433 CGTAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTTTGGCTAGCTGAGCGCCCCC
779 CGTAGGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
*
2573498 ACGCTCGTTTC----G-TG-----GG--T--TGA---C-TT---AG-----
843 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2573523 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCATACCGAGGGTTACGGGTGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * * *
2573588 CTCGAGCATGTGCTGGTGCTGTATTTTGTTTTCCTCGGGGCACCATCGCCTGAGCATCGCCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTT-TTTTCC-CGGGGCACCATCACCGGAGCATCGTCGGAG
* * * *
2573653 AATCTGACCGACGGCATTTGGGTTCCGGCGATTGGGGGGGCGAGAGGGGTGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGG-G-GGGGGGTGTGCGCACATGATGT
* *
2573718 GCAATGGGTGCGGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
2573782 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2573847 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
2573912 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
2573977 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
2574042 TTGCCATGAAACTTCACATGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
2574106 CATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
2574171 GCGCATCCCGCCTCTCTGGCCGGTGTAGTG-CCG-CCGCCCGCTCATTTTGTCGGTTGGCTTAGG
647 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
2574234 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAAAATCAGAAG
712 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATCGGCAG
* * * * ** *
2574299 CACGTAGGGGGGACCCGGCCGATCCCCGGCTTGTGAATCCTGCCCCTTTGGCCGGCCAAGCGCTC
777 CACGTAGGGGGGACCC-GACGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
*
2574364 GCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
2574417 G-AT-C-G-G---A----C---------T--G----GACTGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
** ** *
2574456 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTTC---G--CC-T--GGGGCAACATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCCCGGGGCACCATCACCGG-AGCATCGTCGGAGA
* * ** *
2574513 ACCTAACCGGCGGCGTTGGGGTTCCAACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGCG
* *
2574578 ATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
2574643 CCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-G
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
2574707 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTT
325 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
2574772 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTATGGGGTCAAAACTCCTTATGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
** * * * *
2574837 TTTAAAAAAATCCCGAACATTAAAAAGTTTTAAAAATCGTGAAAAATATAAAATGAGTCGTCTTG
455 TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
2574902 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
2574967 TGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * *
2575032 CATCCCGTCTCTTTGGCTGACGTAGTGCCCGCACGCCCGTTCATTTCGTCAGTTGGCTTAGGCAT
650 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* *** * * * * ** *
2575097 ACAGAGTTCATTTAGAGTCCAAGATCAGATCGGACCGAGGGTTGCCACAGCAAGATCAGCAGCAC
715 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATCGGCAGCAC
* * * * * ** *
2575162 GCAGGGGGGGACCCGATCGATCCCCTGCTTGTGCAT-CTCGCCCTTCTGGCTGGCCAAACGCCCG
780 GTA-GGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCG
* * *
2575226 CACGCTCG-TTCTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATATAA
842 CACGCTCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
2575278 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACATAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
2575343 CTCGGGCATGTGCTGGTGCTGCA-TTTTTTTCGCCTGCGGCACCATC-GC-GAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTC-CC-GGGGCACCATCACCGGAGCATCGTCGGAG
* *
2575405 AACCTGA-C-ACGGCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGTCGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGGGGGGGGTGTG-CGCACATGATGTG
2575468 CG-TGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCT-GAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2575530 ACCCCCTTAAAGAGCATTTGAGATTTTTACAGGTTTGCTGCCAAATAGCCA-TAAAGTGTCTGAA
258 ACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAA
*
2575594 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAACTTCGAGTTTTTAGCTAAATTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC-ACTTCGAGTTTTTAGCTGAATTTTT
*
2575659 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTCTGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
*
2575723 GAAATTTTAAAAAAATCCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
450 AAAATTTTAAAAAAATCC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
2575788 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAA
514 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
2575852 T-GCATTGGCATGGCAGAAATATGAAGATTTGCCTAAACGCACCTACCACCCTATCGATCCATGG
579 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * * * * * * * *
2575916 CTTGCACATGCCATCTCTCTGGCTGTCGTAGTGTCCGCACGCTCGTTCATTTCGTCAGTTGGCTT
644 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* ** * ** * *
2575981 AGGCATACAGAGTTCATTCAAAGTCTAAGATCAGACCAGACCGAGGGTTGCCACAGCAGGATCAG
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATCGG
* ** * * * *
2576046 CAGTACACAGGGGGGACCCGATCGATCCCCTGCTTGTGCATCCCGCCCCTCTGGCCGGCTAAGCG
774 CAGCACGTAGGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * *
2576111 CCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAG--T--
838 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
2576163 G--T---GAG---A-T--C---G---GATC-G----GACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
** * * * ** *
2576206 CTCGACCATGTGTTGGTGTCACATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTC-CC-GGGGCACCATCACCGGAGCATCGTCGGAG
* * **
2576271 AACCTGACCGAC-GCATTGGGGTTCCGACGATTGGGGGGCAGGGGGGTGTGCGCACATGATGTGC
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGC
2576335 GATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTTCATCAAACCTCGAGAACTCAC
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-TCATCAAACCTCGAGAACTCAC
2576399 ACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
2576463 GGGGACAC-TTTTTCAAATGGTCACAAAATCCTTAGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCC-T-GTACACTTCGAGTTTTTAGCTGAATTTTTT
2576527 TGTGCATGCCAACAAAAATACAAGGATCA-GTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
2576590 AAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTGAAAAATCGTGGAAAAATAAGAAAACGAGTC
451 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT-GAAAAAT-AGAAAACGAGTC
*
2576655 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
2576720 TGGCATTGGCACGGCAAAAATATAAAGATCTGCCTAAATCCACCTACCACCCTATCGATCCACGA
579 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * *
2576785 CTTGCGCATCCCACCTCTCTGGTCGGCGTAGTGCCCGCCCATCCGCTCGTTTCATCGATTGGCTT
644 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * ** *
2576850 AGGCATACGAAGTTCATTCCCAGCCTAAGATCAGATCAAACTGAGGGTTATGGTAGCAAGATCGG
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATCGG
* * * *
2576915 CAGCATGCAAGTGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGC
774 CAGCACG-TAGGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* * * *
2576980 GCCCGTAAGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2577037 GCATATGGAGTTCATTCCCAGTGCAAGATCGGACCAGACTGAGGGTTGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * ** *
2577102 CTCGGGCATGTGCTGGTGTCGTATTGTTTTTTGCCCGGGGTACCAT-AGTCAGATTATCATCGGA
66 CTCGGGCATGTGCTGGTGCCGCATT-TTTTTT-CCCGGGGCACCATCA-CCGGAGCATCGTCGGA
* * * * *
2577166 GAACCTGGCCGACGGCATTGGGGTTCCAGCGATT-GGAGGGGAGGGGGTGTGCGCACATGATGTG
128 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTG
*
2577230 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
2577295 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
2577360 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
2577425 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
*
2577490 A-TTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
2577554 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
2577619 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
2577684 CGCATCCCGCCTCTCTGG-TGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
648 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * * *
2577748 ATGCGAAATTCATTCCCAGTCTAAGATCATACCAGACCGAGGGTTGTGGCAGCAGGATCAGCAGC
713 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATCGGCAGC
* * * * * ** *
2577813 ACGTAGGGGGGACCCGGCCGATCTCCGACTTGCACATCCTGCTCCTCTGGCCGATTGAGCGCCCA
778 ACGTAGGGGGGACCC-GACGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
2577878 CATGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
2577930 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACC-GAACCGAGGGTTGTAGGTGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAG-ACCGAGGGTTGCGGGTGCACATGCTGG
* * * * ** *
2577994 GCTCGGGCATGTGGTGGTGCCACATTTTTTTTTGCCCGGGGCACCATGATCGGAGCATTATCGAA
65 GCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTT-CCCGGGGCACCATCACCGGAGCATCGTCGGA
* * * * * *
2578059 GAACCTGATCGACGGCACTGAGGTTCCAGCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTG
128 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTG
*
2578124 CGATGGGTGCTGGTACTTGGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 CGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
2578189 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCGTTAAAATGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * ** *
2578254 TAGGGACACTTTTTTGAAATGGTCACAAAATCCTATACACTTCGAGTTTTCGGCTGAATGTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
2578319 GTGTATTCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTTTGAAA
387 GTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
*
2578384 AAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
451 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
2578449 CCTGCCATGAAACTTCACATGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
2578514 GCATTGTCATGGCAGAAATAAGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCT
581 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * *
2578579 TGCGCATCTCGTTTCTTTGGCCGGCGTGGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
646 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** ** * *
2578644 GCATACGGAGTTCATTCCCTGTCTAAGAATGTG-CCAGA-TCGAGGGTTATGGCAGCAAGATTGA
711 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACT-GAGGGTTGCGGCAGCAAGATCGG
* * * * * * *
2578707 TAGCATGCAGGGGGGACTCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCA
774 CAGCACGTAGGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* *
2578772 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAC
838 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
2578828 GCATATGGAGTTCATTCCCATTGTAAGATCAAACCAGACAGAGGGTTGTGGGTGGACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* *
2578893 CTCAGGCATGTGCTGGTGCGGCATTTTTTTTCGCCCGGGG------CA-C----CATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTT--CCCGGGGCACCATCACCGGAGCATCGTCGGAG
* * ** * ** *
2578947 AACCTGACCGACGGTATTGGGGTTTTGGCGATT-GGGGGGGTGGGGGTGTGTACAGATGATGTGC
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGC
* * * * *
2579011 GATCGGTACTGGTACTTGGCCCTTATATTGG-CCTCTATCCCTCATTAAACCTCGAGAACTCAAA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
2579075 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
2579140 GGGACACTTTTTTCAACTGGTCACAAAATCCTGTACACTTCAAATTTTTAGCTAAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
2579205 GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAA
* * * * *
2579270 ATTTT-AAAAAATCTCGAACAGTTAAAAACTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
453 ATTTTAAAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
2579334 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
2579399 CATTGGCATGGCTGAAACATGAAGATGTACATAAACTCACCTACCACCCTATCGATCCACGGCTT
582 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
2579464 GCGCATCTCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGG
647 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * * *
2579529 CATACAGAGTTCATTCCCAGTCTAAGAT-TGAATCAGACTGCGGGTTGAGGCGGTAGGATTGGCA
712 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGCAAGATCGGCA
* * * * * *
2579593 GCATGTAGGGGGGGACTCGATCGATCCCCGGCTGGCGCATCCTGCCCCTCTGGCAGACTGAGCAC
776 GCACGTA-GGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
*
2579658 CCGCACGCTCGTTTCATGGGTTGACTT-GGCATACGGAGTTCATTCCCAGTTTAA
839 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2579712 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCAGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
2579777 CTCGGGCATGTGCTGTTGTCGTATTTTTTTTCGCCCGGGGCACCATCACTGGAGCAACGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTT--CCCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * * *
2579842 AACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGTGTGCGCATATGATGTGT
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGC
*
2579906 GATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2579971 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
2580036 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
2580101 GCATGCCAACAAAAATACAACGATCACATATACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * *
2580166 TTTTAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
454 TTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
2580231 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
2580296 TTGGCATGGCTGAAACATGAAGATGTACGTAAACTCACCTACCACCCTATCGATCCACGGCTTGC
584 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
2580361 GCATCTCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCA
649 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * * * * * * * * *
2580426 TATAGAGTTCATTCCCAATCTAAGAT-TGAATCAGACTGCGGGTTGAGGCGGTAGGATTGGCAGC
714 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGCAAGATCGGCAGC
* * * * *
2580490 ACGTAGGGGGGGACTCGATCGATCCCCGGCTGGCGTATCCTGCCCCTCTGGCAGACTGAGCGCCC
778 ACGTA-GGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
**
2580555 GCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
841 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2580608 GCATACGGAGTTCATTCCTAGTGTAAGATCGGACCAGACCGAGGGTTGGGGGTGCACGTGCTAGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
** * **
2580673 CTCGAACATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATGGCCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTTTT-CCCGGGGCACCATCACCGGAGCATCGTCGGAG
* *
2580738 AACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGG-GGGGGGGGTGTGCGCACATGATGTG
*
2580803 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2580868 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAA
258 ACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2580932 TGGGGACACTTTTTTCAAAT-GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
2580995 GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCTG-AAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
*
2581057 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
2581122 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
2581187 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
2581252 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGG
647 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
2581317 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATTGGCAG
712 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATCGGCAG
2581382 TACACAAGGG
Statistics
Matches: 10961, Mismatches: 1105, Indels: 482
0.87 0.09 0.04
Matches are distributed among these distances:
857 261 0.02
858 220 0.02
859 45 0.00
860 89 0.01
861 94 0.01
862 2 0.00
863 46 0.00
864 23 0.00
865 38 0.00
866 109 0.01
867 236 0.02
868 312 0.03
869 256 0.02
870 217 0.02
871 99 0.01
872 225 0.02
873 45 0.00
874 3 0.00
875 2 0.00
876 3 0.00
877 1 0.00
878 2 0.00
879 5 0.00
880 4 0.00
881 2 0.00
882 5 0.00
883 68 0.01
884 545 0.05
885 94 0.01
886 52 0.00
887 132 0.01
888 78 0.01
889 537 0.05
890 503 0.05
891 141 0.01
892 204 0.02
893 864 0.08
894 482 0.04
895 924 0.08
896 2176 0.20
897 974 0.09
898 766 0.07
899 72 0.01
900 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCCCGGGGCACCATCACCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATCGGCAGCACG
TAGGGGGGACCCGACGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2570872 original size:26 final size:26
Alignment explanation
Indices: 2570836--2570888 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2570826 GTTAATTTAG
2570836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2570862 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2570888 G
1 G
2570889 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2577934 original size:26 final size:26
Alignment explanation
Indices: 2577904--2577956 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2577894 GTTGACTTAG
2577904 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2577930 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2577956 G
1 G
2577957 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2579715 original size:26 final size:26
Alignment explanation
Indices: 2579686--2579738 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2579676 GGTTGACTTG
* *
2579686 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTGTAA
2579712 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTGTAA
2579738 G
1 G
2579739 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTGTAA
Found at i:2580307 original size:895 final size:895
Alignment explanation
Indices: 2576141--2581381 Score: 7653
Period size: 895 Copynumber: 5.9 Consensus size: 895
2576131 GTTAACTTAG
* * * * * *
2576141 GCATACGAAGTTCATTCCCAGTGTGAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTAGG
** * * * *
2576206 CTCGACCATGTGTTGGTGTCACATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGTCACATTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGAG
2576271 AACCTGACCGAC-GCATTGGGGTTCCGACGATTGGGGGGCAGGGGGGTGTGCGCACATGATGTGC
131 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCAGGGGGGTGTGCGCACATGATGTGC
2576335 GATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTTCATCAAACCTCGAGAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-TCATCAAACCTCGAGAACTCAC
2576399 ACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
2576463 GGGGACAC-TTTTTCAAATGGTCACAAAATCCTTAGTACACTTCGAGTTTTTAGCTGAATTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCC-T-GTACACTTCGAGTTTTTAGCTGAATTTTTT
2576527 TGTGCATGCCAACAAAAATACAAGGATCA-GTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * *
2576590 AAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTGAAAAATCGTGGAAAAATAAGAAAACGAGTC
453 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT-GAAAAAT-AGAAAACGAGTC
*
2576655 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
2576720 TGGCATTGGCACGGCAAAAATATAAAGATCTGCCTAAATCCACCTACCACCCTATCGATCCACGA
581 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
2576785 CTTGCGCATCCCACCTCTCTGGTCGGCGTAGTGCCCGCCCATCCGCTCGTTTCATCGATTGGCTT
646 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTT
* * * * * *
2576850 AGGCATACGAAGTTCATTCCCAGCCTAAGA-TCAGATCAAACTGAGGGTT-ATGGTAGCAAGATC
711 AGGCATACG-AGTTCATTCCCAGTCTAAGATTGA-ATCAGACTGAGGGTTGA-GGCAGCAGGATT
* * * * * **
2576913 GGCAGCATGCAAGTGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGA
773 GGCAGCATG-TAGGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCAGACTGA
* * * *
2576978 GCGCCCGTAAGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2577037 GCATATGGAGTTCATTCCCAGTGCAAGATCGGACCAGACTGAGGGTTGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTAGG
** * * ** *
2577102 CTCGGGCATGTGCTGGTGTCGTATTGTTTTTT-GCCCGGGGTACCAT-AGTCAGATTATCATCGG
66 CTCGGGCATGTGCTGGTGTCACATT-TTTTTTCGCCCGGGGCACCATCA-TCGGAGCATCGTCGG
*
2577165 AGAACCTGGCCGACGGCATTGGGGTTCC-AGCGATTGGAGGGG-A-GGGGGTGTGCGCACATGAT
129 AGAACCTGACCGACGGCATTGGGGTTCCGA-CGATTGG-GGGGCAGGGGGGTGTGCGCACATGAT
*
2577227 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
2577292 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
2577357 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
2577422 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* *
2577487 AAAA-TTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
452 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
2577551 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
2577616 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
582 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
2577681 TTGCGCATCCCGCCTCTCTGG-TGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
647 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTA
* * * * * * **
2577745 GGCATGCGAAATTCATTCCCAGTCTAAGA-TCATACCAGACCGAGGGTTGTGGCAGCAGGATCAG
712 GGCATACG-AGTTCATTCCCAGTCTAAGATTGA-ATCAGACTGAGGGTTGAGGCAGCAGGATTGG
* * ** * * * * * *
2577809 CAGCACGTAGGGGGGACCCGGCCGATCTCCGACTTGCACATCCTGCTCCTCTGGCCGATTGAGCG
775 CAGCATGTAGGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCAGACTGAGCG
* * * *
2577874 CCCACATGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
2577930 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACC-GAACCGAGGGTTGTAGGTGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAG-ACCGAGGGTTGTGGGTGCACATGCTAG
* * * * ** *
2577994 GCTCGGGCATGTGGTGGTGCCACATTTTTTTTTGCCCGGGGCACCATGATCGGAGCATTATCGAA
65 GCTCGGGCATGTGCTGGTGTCACATTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGA
* * * *
2578059 GAACCTGATCGACGGCACTGAGGTTCC-AGCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGT
130 GAACCTGACCGACGGCATTGGGGTTCCGA-CGATTGGGGGGCAGGGGGGTGTGCGCACATGATGT
*
2578123 GCGATGGGTGCTGGTACTTGGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
194 GCGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
2578188 ACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCGTTAAAATGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * ** *
2578253 ATAGGGACACTTTTTTGAAATGGTCACAAAATCCTATACACTTCGAGTTTTCGGCTGAATGTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
2578318 TGTGTATTCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTTTGAA
388 TGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* *
2578383 AAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
452 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
2578448 TCCTGCCATGAAACTTCACATGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
2578513 GGCATTGTCATGGCAGAAATAAGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGC
582 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * * *
2578578 TTGCGCATCTCGTTTCTTTGGCCGGCGTGGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
647 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTA
* * *** *
2578643 GGCATACGGAGTTCATTCCCTGTCTAAGAATGTGCCAGA-TCGAGGGTT-ATGGCAGCAAGATTG
712 GGCATAC-GAGTTCATTCCCAGTCTAAGATTGAATCAGACT-GAGGGTTGA-GGCAGCAGGATTG
** * * *
2578706 ATAGCATGCAGGGGGGACTCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGTC-GGCTGAG
774 GCAGCATGTAGGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG-CAGACTGAG
* * *
2578770 CACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAC
838 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
2578828 GCATATGGAGTTCATTCCCATTGTAAGATCAAACCAGACAGAGGGTTGTGGGTGGACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTAGG
* *
2578893 CTCAGGCATGTGCTGGTG-CGGCATTTTTTTTCGCCCGGGG------CA-C----CATCGTCGGA
66 CTCGGGCATGTGCTGGTGTC-ACATTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGA
* ** * ** *
2578946 GAACCTGACCGACGGTATTGGGGTTTTGGCGATTGGGGGG--GTGGGGGTGTGTACAGATGATGT
130 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCAG-GGGGGTGTGCGCACATGATGT
* * * *
2579009 GCGATCGGTACTGGTACTTGGCCCTTATATTGG-CCTCTATCCCTCATTAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2579073 AACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
2579138 TGGGGACACTTTTTTCAACTGGTCACAAAATCCTGTACACTTCAAATTTTTAGCTAAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
2579203 GTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAA
* * * *
2579268 AAATTTT-AAAAAATCTCGAACAGTTAAAAACTTTCAAAAATCGTGAAAAATAGAAAATGAGTCG
453 AAATTTTAAAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
2579332 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
2579397 GGCATTGGCATGGCTGAAACATGAAGATGTACATAAACTCACCTACCACCCTATCGATCCACGGC
582 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*
2579462 TTGCGCATCTCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTA
647 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTA
* * *
2579527 GGCATACAGAGTTCATTCCCAGTCTAAGATTGAATCAGACTGCGGGTTGAGGCGGTAGGATTGGC
712 GGCATAC-GAGTTCATTCCCAGTCTAAGATTGAATCAGACTGAGGGTTGAGGCAGCAGGATTGGC
* *
2579592 AGCATGTAGGGGGGGACTCGATCGATCCCCGGCTGGCGCATCCTGCCCCTCTGGCAGACTGAGCA
776 AGCATGTA-GGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCAGACTGAGCG
*
2579657 CCCGCACGCTCGTTTCATGGGTTGACTT-GGCATACGGAGTTCATTCCCAGTTTAA
840 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2579712 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGC-AGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTA-G
* ** *
2579776 GCTCGGGCATGTGCTGTTGTCGTATTTTTTTTCGCCCGGGGCACCATCA-CTGGAGCAACGTCGG
65 GCTCGGGCATGTGCTGGTGTCACATTTTTTTTCGCCCGGGGCACCATCATC-GGAGCATCGTCGG
*
2579840 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGC-GGGGGGTGTGCGCATATGATGT
129 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCAGGGGGGTGTGCGCACATGATGT
* *
2579904 GTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2579969 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2580034 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
2580099 GTGCATGCCAACAAAAATACAACGATCACATATACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* *
2580164 AATTTTAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
454 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
2580229 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
2580294 CATTGGCATGGCTGAAACATGAAGATGTACGTAAACTCACCTACCACCCTATCGATCCACGGCTT
584 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
2580359 GCGCATCTCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGG
649 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGG
* * * * *
2580424 CATATAGAGTTCATTCCCAATCTAAGATTGAATCAGACTGCGGGTTGAGGCGGTAGGATTGGCAG
714 CATA-CGAGTTCATTCCCAGTCTAAGATTGAATCAGACTGAGGGTTGAGGCAGCAGGATTGGCAG
* * *
2580489 CACGTAGGGGGGGACTCGATCGATCCCCGGCTGGCGTATCCTGCCCCTCTGGCAGACTGAGCGCC
778 CATGTA-GGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCAGACTGAGCGCC
**
2580554 CGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
842 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2580608 GCATACGGAGTTCATTCCTAGTGTAAGATCGGACCAGACCGAGGGTTGGGGGTGCACGTGCTAGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTAGG
** * * ***
2580673 CTCGAACATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATGGCCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGTCACATTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGAG
* **
2580738 AACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGC-AGGGGGGTGTGCGCACATGATGTG
*
2580803 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2580868 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2580932 TGGGGACACTTTTTTCAAAT-GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
2580995 GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCTG-AAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
2581057 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
2581122 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
2581187 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
584 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
2581252 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGG
649 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGG
* * * * *
2581317 CATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCGAGGGTTGTGGTAGCAGGATTGGCA
714 CATAC-GAGTTCATTCCCAGTCTAAGATTGA-ATCAGACTGAGGGTTGAGGCAGCAGGATTGGCA
2581381 G
777 G
2581382 TACACAAGGG
Statistics
Matches: 3949, Mismatches: 336, Indels: 123
0.90 0.08 0.03
Matches are distributed among these distances:
883 61 0.02
884 549 0.14
885 94 0.02
886 37 0.01
887 39 0.01
890 3 0.00
891 1 0.00
892 14 0.00
893 537 0.14
894 157 0.04
895 843 0.21
896 746 0.19
897 370 0.09
898 485 0.12
899 13 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTAGG
CTCGGGCATGTGCTGGTGTCACATTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGAG
AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCAGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
TTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCA
TACGAGTTCATTCCCAGTCTAAGATTGAATCAGACTGAGGGTTGAGGCAGCAGGATTGGCAGCAT
GTAGGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCAGACTGAGCGCCCGCA
CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2580612 original size:26 final size:26
Alignment explanation
Indices: 2580582--2580634 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2580572 GTTGACTTAG
*
2580582 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
2580608 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2580634 G
1 G
2580635 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2582192 original size:820 final size:819
Alignment explanation
Indices: 2580600--2583982 Score: 2875
Period size: 820 Copynumber: 3.9 Consensus size: 819
2580590 AGTTCATTCC
* * * *
2580600 CAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCGGACCAGACCGAGGGTTGGGGGTGCAC
1 CAGTCTAAGCATACAGAGTTCATTCCTAGTGTAAGATCAGACCAGACCGAGGGTTGAGGATGCAC
* *
2580665 GTGCTAGGCTCGAACATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATGGCCGGAGCAT
66 ATGCTAGGCTCGAACATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATGGCCGAAGCAT
*
2580730 CGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGCGAGGGGGGTGTGCGCAC
131 CGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATT-GGGGGCGAGGGAGGTGTGCGCAC
2580795 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
195 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
* * *
2580860 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGGTTTGCTGCAGTAGCCATTAAAGTG
260 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTTGCTCCAGTAGCCACTAAAGTG
2580925 TCTGAAATGGGGACACTTTTTTCAAATGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT
325 TCTGAAATGGGGACACTTTTTTCAAATGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT
*
2580990 TTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGA
390 TTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTGGGGCCAAAACTCCTTCTGA
* *
2581055 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
455 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCG
2581120 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
520 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
2581185 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
585 GGCATTGGCATGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACAGC
* * *
2581250 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTA
650 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTA
* * * **
2581315 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATTGGC
715 GGCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGACCAAGGCTTGCAGTAGCAGGATTGGC
2581380 AGTACACAAGGGGGTCCCGGCTGATCCGTGGCTAAGCATA
780 AGTACACAAGGGGGTCCCGGCTGATCCGTGGCTAAGCATA
* *
2581420 CAGTCTAAGCATTCAGAGTTCATTCCTAGTGTAAGATCAGACCAGACCGGGGGTTGAGGATGCAC
1 CAGTCTAAGCATACAGAGTTCATTCCTAGTGTAAGATCAGACCAGACCGAGGGTTGAGGATGCAC
** *
2581485 ATGTCT-GGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATTGCCGAAGCA
66 ATG-CTAGGCTCGAACATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATGGCCGAAGCA
* * *
2581549 TCGTTGGAGAACTTGACCGGCGGCATTGGGGTTCCGGTGATT-GGGG-GAGGGAGGTGTGCGCGC
130 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGCGAGGGAGGTGTGCGCAC
* *
2581612 ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAAT-CCTCATCAAACCTCG
195 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCA
*
2581676 AGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTTCCAGTAGCCACTAAAG
259 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTTGC-TCCAGTAGCCACTAAAG
2581740 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
323 TGTCTGAAATGGGGACACTTTTTTCAAAT-GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
*
2581805 AATTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTGGGGCCAAAACTCCTT
387 AATTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTGGGGCCAAAACTCCTT
2581870 CTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
451 CTG-AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
2581935 AATCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
515 AATCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
2582000 AAAATGGCATTGGCATGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCA
580 AAAATGGCATTGGCATGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCA
*** * *
2582065 ACAGCTTGCGCATCCCTTGTCTTTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTG
645 ACAGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTG
* *
2582130 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAGCAGACCAGACTAAGGCTTGCAGTAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGACCAAGGCTTGCAGTAGCAGGA
* * * * * ** * ** * * *
2582195 TTGGTAGCACATAGGGGAGGACCCAACTGAACCCCGACTTATGCATC
775 TTGGCAGTACACAAGGG-GGTCCCGGCTGATCCGTGGC-TAAGCATA
* * * * * * * * * * * * *
2582242 CGGCCCCTCT-GGCCGGTTGAGTGCCCGCACGGTCGTTTC-ATGGGT-TGACTTAG-GCATACGG
1 CAG----TCTAAG-C-----A-T-ACAG-A-GTTCATTCCTA-GTGTAAGA-TCAGACCAGACCG
** * * * * * * * ** * * ***
2582303 AGTTCATTCCCAGTCTAAGCATATG-GA-GTTC-ATTCCCA-GTG-TAATATCAGATCGGATCGA
50 AG--GGTT--GAG--GATGCACATGCTAGGCTCGA---ACATGTGCTGGT-GC-CA-C--ATTTT
*** * * **
2582363 GGGTTG--CGGGTGCA-CATGCTGCGCTCG-GGCAT-GTGCTGGTGCCACATTTGTTTTTCACAA
101 TTTTTGCCCGGG-GCACCA---TG-GC-CGAAGCATCGT-C-GGAG--A-ACCTG------AC--
* ** * * ** * *** *
2582423 TGGGCACCATCCCGGAGTATCGGCGCGAAAACTTGACCGACGGC-ATTGGGGTTACGGTGATTGG
147 -CGGCGGCAT--TGGGGT-TC--CG-G-TGA-TTG---G-GGGCGA---GGG--A-GGTGTGCGC
*** * * * * ** *** *
2582487 GGGTGGGGGTGTGCGCACATGATGTACGATGGGTGC-TGGAACTTGGCCCTTATATTGGCCCCGT
193 ACAT---GATGTGCG---ATG-GGT--GCT-GGTACTTGGCCCTT-ATA------TTGGCCCCCT
2582551 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGC
241 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTTGC
* * *
2582615 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTAC
306 T-CCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT-GTCACAAAATCCTGTAC
* * * *
2582680 ACTTCAACTTTTTAGCTGAATTTTTTTATGCATACCAAAAAAAATACAAGGATCACGTCTACCAA
369 ACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAA
* * * *
2582745 GTGTGGGGCAAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAATCGTAAAAAGTTTCAAAA
432 GT-TGGGGCCAAAACTCCTTCTG-AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* *
2582810 ATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
495 ATCATGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
*
2582875 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
560 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCACAAATATGAAGATGTGCCTAAACCC
* * * * * *
2582940 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGCATAGTGCCCACCCG
625 ACCTACCACCCTATCGATCAACAGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCG
* * * * * * ** *
2583005 CCCGCTCGCTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGAT
690 CCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGAC
* * * * ** * * * *
2583070 CGAGGGTTGCAGCAGTAGGATCAGCAGCACACAGGGGGGACCCGGC-GATCC-TCGGCTTACGCA
755 CAAGGCTTGCAGTAGCAGGATTGGCAGTACACAAGGGGGTCCCGGCTGATCCGT-GGC-TAAGCA
*
2583133 TC
818 TA
* * * * * * * * *
2583135 CTGCCCCTCTGGCCAGCTGAATGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTT
1 CAG----TCT---AAGC---AT-ACAG-A-GTTC-ATTC-CTAG-TG---TAAG-AT-C--AG--
** * *
2583200 CATTCCCAGTCTAAGCATACGGAGTTCATTCTAGTGTAAGATCAGACCAGACCAAGGGTTGCGGG
41 -A---CCAG----A-CCGA-GG-GTTGA----GG------AT--G--C--A-C-A----------
** * * * *
2583265 TGCAAATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTGTTTTTTTGCTCGGGGCACCATCGTCG
67 ------TGCTAGGCTCGAACATGTGCTGGTGCCACATT-TTTTTTTGCCCGGGGCACCATGGCCG
* * * * ** **
2583330 AAGCATCGCCGGAGAACCTAACCGGCAGCATTAGGGTTCAAGCAATTAGGGGG-GAAGTGG-GGT
125 AAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATT-GGGGGCG-AG-GGAGGT
* * *
2583393 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCACTATCCATCATCA
187 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
** * * *
2583458 AACCTTGAGAACTGACACCCCCTTAAAGAGCAATTGAGATTTTACA-AGTTTGCTGCCAGTAGCC
252 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTTGCT-CCAGTAGCC
* * *
2583522 ATTAAAGTGTCTGGAATGGGGACACTTTTTTCAATTGGTCACAAAATCCTGTACACTTCGAGTTT
316 ACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT-GTCACAAAATCCTGTACACTTCGAGTTT
* * **
2583587 TTAGCTTAATTTTTTTGTGCATGCCAACAAAATTATGAGGATCACGTCTACCAAGTGTGGGGCCA
380 TTAGCTGAA-TTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGT-TGGGGCCA
* * * * * **
2583652 AAAATCGTTCTGGAAAAATTTAAAAAAAATCCCAAACCGTAAAAAGTTTAAAAAATTGTGAAAAA
442 AAACTCCTTCT-GAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
*
2583717 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
506 TAGAAAACGAATCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
2583782 CAAGCCATAAAAAAGGCATTGGCATGGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCC
571 CAAGCCATAAAAATGGCATTGGCATGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * * *
2583847 TATCGATCCACGGCTTGCGCATCCCGCATCTCTGGTCGGTGCATAGTGCCTGCCCGTCCGCTCGT
636 TATCGATCAACAGCTTGCGCATCCCGCCTCTCTGG-CCG-ACGTAGTGCCCGCCCGCCCGCTCGT
* * * * * * *
2583912 TTCGTCGGTTGGCTTAGGCATA--GAATTCATT-CCAGTCTTAGATCAGACCAGACTAAGGGTTG
699 TTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGACCAAGGCTTG
2583974 CAGTAGCAG
764 CAGTAGCAG
2583983 ATCGATAGCA
Statistics
Matches: 2088, Mismatches: 289, Indels: 297
0.78 0.11 0.11
Matches are distributed among these distances:
816 7 0.00
817 155 0.07
818 60 0.03
819 46 0.02
820 469 0.22
821 15 0.01
822 8 0.00
825 1 0.00
826 4 0.00
831 1 0.00
832 1 0.00
833 2 0.00
834 10 0.00
835 12 0.01
836 2 0.00
838 7 0.00
839 4 0.00
840 10 0.00
841 7 0.00
842 3 0.00
843 5 0.00
844 3 0.00
845 6 0.00
846 5 0.00
848 1 0.00
849 4 0.00
855 2 0.00
858 6 0.00
860 4 0.00
861 2 0.00
863 2 0.00
864 1 0.00
865 1 0.00
866 2 0.00
870 1 0.00
871 3 0.00
874 3 0.00
876 1 0.00
877 7 0.00
880 6 0.00
883 3 0.00
884 2 0.00
886 8 0.00
887 4 0.00
892 3 0.00
893 181 0.09
894 51 0.02
895 360 0.17
896 418 0.20
897 3 0.00
898 43 0.02
899 1 0.00
900 2 0.00
901 1 0.00
902 4 0.00
903 10 0.00
905 2 0.00
906 3 0.00
909 7 0.00
910 2 0.00
912 6 0.00
913 2 0.00
914 1 0.00
915 5 0.00
916 3 0.00
917 2 0.00
918 2 0.00
920 2 0.00
921 4 0.00
922 1 0.00
923 1 0.00
925 3 0.00
926 3 0.00
927 1 0.00
928 7 0.00
929 1 0.00
931 2 0.00
937 2 0.00
938 1 0.00
940 5 0.00
941 6 0.00
942 4 0.00
943 3 0.00
944 4 0.00
945 10 0.00
946 5 0.00
947 5 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (819 bp):
CAGTCTAAGCATACAGAGTTCATTCCTAGTGTAAGATCAGACCAGACCGAGGGTTGAGGATGCAC
ATGCTAGGCTCGAACATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATGGCCGAAGCAT
CGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGCGAGGGAGGTGTGCGCACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTTGCTCCAGTAGCCACTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
TTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTGGGGCCAAAACTCCTTCTGAA
AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCGT
CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACAGCT
TGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGACCAAGGCTTGCAGTAGCAGGATTGGCA
GTACACAAGGGGGTCCCGGCTGATCCGTGGCTAAGCATA
Found at i:2583695 original size:896 final size:891
Alignment explanation
Indices: 2581420--2587593 Score: 8337
Period size: 893 Copynumber: 6.9 Consensus size: 891
2581410 GCTAAGCATA
* * * * * *
2581420 CAGTCTAAGCATTCAGAGTTCATTCCTAGTGTAAGATCAGACCAGACCGGGGGTTGAGGATGCAC
1 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCAC
* * *
2581485 ATGTCTGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATTGCCGAAGCAT
66 ATG-CTGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCAT
** * * *
2581550 CGTTGGAGAACTTGACCGGCGGCATTGGGGTTCCGG-TGATT-GGGGGAGGGAGGTGTGCGCGCA
130 CGCCGGAGAACCTGACCGGCGGCATTGGGGTT-CGGACGATTGGGGGGAGGG-GGTGTGCGCACA
*
2581613 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAAT-CCTCATCAAACCTCGA
193 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGA
* * *
2581677 GAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCACTAAAGTG
257 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
2581742 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
322 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
* *
2581807 -TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG-TTGGGGCCAAAACTCCTT
387 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
*
2581870 CTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
452 CTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
2581935 AATCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
517 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
2582000 AAAATGGCATTGGCATGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCA
582 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *** * * * *
2582065 ACAGCTTGCGCATCCCTTGTCTTTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTG
647 ACGGCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
2582130 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAGCAGACCAGACTAAGGCTTGCAGTAGCAGGA
712 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGAC-GAGGGTTGCAGTAGCAGGA
* ** ** * * ** * *
2582195 TTGGTAGCACATAGGGGAGGACCCAACTGAACCCCGACTTATGCATCCGGCCCCTCTGGCCGGTT
776 TCGACAGCACATAGGGG-GGACCCGGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
* * *
2582260 GAGTGCCCGCACGGTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
840 GA-AGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
2582313 CAGTCTAAGCATATGGAGTTCATTCCCAGTGTAATATCAGATCGGATCGAGGGTTGCGGGTGCAC
1 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCAC
* * ** *
2582378 ATGCTGCGCTCGGGCATGTGCTGGTGCCACATTTGTTTTT-CACAATGGGCACCATC-CCGGAGT
66 ATGCTG-GCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGC-C-CGGGGCACCATCGCCGGAGC
* * * * * *
2582441 ATCGGCGCGAAAACTTGACCGACGGCATTGGGGTTACGG-TGATT-GGGGGTGGGGGTGTGCGCA
128 ATCGCCG-GAGAACCTGACCGGCGGCATTGGGGTT-CGGACGATTGGGGGGAGGGGGTGTGCGCA
* * * *
2582504 CATGATGTACGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCA
191 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
2582569 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
256 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
2582634 GTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCAACTTTTTAGCTGA
321 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
* * * *
2582699 ATTTTTTTATGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGG-CAAAAACTCC
386 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCC
* * * * *
2582763 TTCTGAAAAAATTTAAAAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAA
450 TTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
2582828 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
515 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
2582893 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
580 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
2582958 CCACGGCTTGCGCATCCCGCCTCTCTGGTCGGCATAGTGCCCACCCGCCCGCTCGCTTCGTCGGT
645 CCACGGCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
2583023 TGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGATCGAGGGTTGCAGCAGTAG
710 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGA-CGAGGGTTGCAGTAGCAG
* * * *
2583088 GATC-AGCAGCACACAGGGGGGACCCGGC-GATCCTCGGCTTACGCATCCTGCCCCTCTGGCCAG
774 GATCGA-CAGCACATAGGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* *
2583151 CTGAATGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCC
838 CTGAA-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * *
2583206 CAGTCTAAGCATACGGAGTTCATT-CTAGTGTAAGATCAGACCAGACCAAGGGTTGCGGGTGCAA
1 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCAC
* * *
2583270 ATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTGTTTTTTTGCTCGGGGCACCATCGTCGAAGCA
66 ATGCT-GGCTCGGGCATGTGCTGGTGCCGCATT-TTTTTTTGCCCGGGGCACCATCGCCGGAGCA
* * * * *
2583335 TCGCCGGAGAACCTAACCGGCAGCATTAGGGTTC-AAGCAATTAGGGGGGAAGTGGGGTGTGCGC
129 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCGGA-CGATT-GGGGGG-AG-GGGGTGTGCGC
* * * *
2583399 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCACTATCCATCATCAAACCTT
190 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
2583464 GAGAACTGACACCCCCTTAAAGAGCAATTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAG
255 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
2583529 TGTCTGGAATGGGGACACTTTTTTCAATTGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTT
320 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
* ** * *
2583594 AATTTTTTTGTGCATGCCAACAAAATTATGAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCG
385 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
* * * * *
2583659 TTCTGGAAAAATTTAAAAAAAATCCCAAACCGTAAAAAGTTTAAAAAATTGTGAAAAATAGAAAA
450 TTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
2583724 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
515 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
2583789 TAAAAAAGGCATTGGCATGGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGAT
580 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
2583854 CCACGGCTTGCGCATCCCGCATCTCTGGTCGGTGCATAGTGCCTGCCCGTCCGCTCGTTTCGTCG
645 CCACGGCTTGCGCATCCCGCCTCTCTGGTC-G-GCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCG
* * * *
2583919 GTTGGCTTAGGCAT--AGAATTCATT-CCAGTCTTAGATCAGACCAGACTAAGGGTTGCAGTAGC
708 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGAC-GAGGGTTGCAGTAGC
* * ** *
2583981 A-GATCGATAGCACAAAGGGGGGGACTTGGCTGAT-CCCAGCTTGCGCATCCTGCCCCTCTGGCC
772 AGGATCGACAGCACATA-GGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
*
2584044 GGCTG-AGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGTGTTCATTCC
836 GGCTGAAGC-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * ** *
2584100 CATTCTAAGCATACAGAGTTCATTCCCAGGGTAAGATTGGACCAGACCGAGGGTT--GGGTCCAC
1 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCAC
* * * * *
2584163 ATGCTAGGCTCGAGCATGTGCTGGTGCCGTA-TTTTTTTT-CCCGAGACACCATTGCCGGAGCAT
66 ATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCAT
* * * * * * *
2584226 CGCCAGAGAACCTGATCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGGTGTGCAACAT
130 CGCCGGAGAACCTGACCGGCGGCATTGGGGTTCGGACGATTGGGGGGAGGGGGTGTGCGC-ACAT
2584291 GATGTG-GATGGGTGCTGGTACTTGGCCCTTTATATTGG-CCCCTATCCCTCATCAAACCTCGAG
194 GATGTGCGATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
2584354 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTA-GTTTGCTG-CAGTAGCCATTAAAGTG
258 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAAGTG
2584417 TCTGAAATGGGGACAC-TTTTTCAAATGGTTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
322 TCTGAAATGGGGACACTTTTTTCAAATGG-TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
2584481 ATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
386 A-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
*
2584546 TTTCTGAAAAAATTTTTAAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAA
450 -TTCTGAAAAAA-TTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
2584611 AACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTACAAGC
513 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
2584676 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
578 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * **
2584741 ATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGACCGCTTGCTCGTTTCGTCG
643 ATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * * * **
2584806 GTTGGCTTAAGCATACAGAGTTCATTCCTAATATACGATTAGA-TCAGACCGAGGGTAGTGGTAG
708 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT-AGA-CGAGGGTTGCAGTAG
* * * * * *
2584870 TAGGATC-AGCATCACGTAGGGGGGACCCGACTGATCCCTGGCTTGCGCAACCTGCCCCTCTGGC
771 CAGGATCGA-CAGCACATAGGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
* * * *
2584934 CGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
835 CGGCTGA-AGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * *
2584992 CAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGGACCAGATCGAGGGTTGTGGTTGCAT
1 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCAC
** * *
2585057 ATGCTGGACTCGGGCATGTGCTGGT---ATATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCAT
66 ATGCTGG-CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCAT
* *
2585119 CGCCGGAGAACCTGACCGG-GTGCATTGGGGTTCGGACAATTGGTTGGCGGAGGTGGG-GTTGTG
130 CGCCGGAGAACCTGACCGGCG-GCATTGGGGTTCGGACGATTGG--GG-GGAGG-GGGTG-TGCG
* * ** *
2585182 CACATTATGTGTGA-CAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCT
189 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
2585246 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
254 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
2585311 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
319 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
*
2585376 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTC
384 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
2585440 CTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
449 CTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
2585505 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
514 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
2585570 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
579 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
*
2585635 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
644 TCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
2585700 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCAAGCAGCA
709 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACGAGGGTTGC-AGTAGCA
* * * * *
2585765 GGATCGACAGCACGTA-GGGGGACCCGGCCGA-CCCCGGCTTGCGTATCCTGCCCCTCTAGCTGG
773 GGATCGACAGCACATAGGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* * *
2585828 CTG-AGCACCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTAATTCC
838 CTGAAG--CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
2585883 C-GTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCAAGGGTTGTGGGTGCAG
1 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCAC
* * * ** *
2585947 ATGCTAGGCACGGGCATATGCTGGTGTCGCATTTTTTTTCACCCAGGGCACCAT---C---G--T
66 ATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCAT
* ** * * * *
2586004 ---CGGAGAACCTGATCAACAGCGTTGGGGTTCTGACGATTGGGAGGGCGGGGGGTGTGCGCACA
130 CGCCGGAGAACCTGACCGGCGGCATTGGGGTTCGGACGATTGGG-GGG-AGGGGGTGTGCGCACA
*
2586066 TGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
193 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
2586131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
258 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
2586196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
323 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT
* ** * * * *
2586261 ATTTTTGTGCACACCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTT
388 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
* ** * *
2586326 TGAAAAAATTTGAAAAAAATCTTGAACCGTAAAAATTTTCCAAAATCGTGAAAAATAGAAAACGA
453 TGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* *
2586391 GTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAA
518 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
2586456 AAATGGCATTGGCATGGAAAAAATATGAAAATGTGCCTAAACCCACC-AGCCACCCTATCGATTC
583 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CCACCCTATCGATCC
* * * ** * * * *
2586520 ACGACTTGCACATCCCGCCTCTTTGGTTAGCGTAGTGCCCGCCTGTCCGCTCGTTTCATCAGTTG
647 ACGGCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** *
2586585 GCTTAGGTATACAGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACTGAGGGTTGTGGTAGCAAG
712 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT-AGAC-GAGGGTTGCAGTAGCAGG
* * ** *
2586649 ATCGACAGCCCATAGGGGGGACAC-AATCGATCCCCTGGCATGCGCATCCTGCCCCTCTGGCCGG
775 ATCGACAGCACATAGGGGGGACCCGGCT-GATCCCC-GGCTTGCGCATCCTGCCCCTCTGGCCGG
* * * *
2586713 CTG-AGCGCCGCACGCACGTTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCT
838 CTGAAGC-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
2586767 CGGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAATCGAGGGTTGCGAGTGCA
1 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAG-ACCGAGGGTTGCGGGTGCA
* *
2586831 CATGCTGGGCTCGGGTATGTGCTGGTGCCGCATTTTTTTTTCGCCCAGGGCACCATCGCCGGAGC
65 CATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTT-GCCCGGGGCACCATCGCCGGAGC
** * * * *
2586896 ATCATCGGAGAACCTGGCTGGCGGCATTGGGGTTCCGACGATTTGGGGGCATGGAGGGTGTGCGC
128 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCGGACGA-TTGGGGGGA-GG-GGGTGTGCGC
* * *
2586961 ACATGATGTGTGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATGAAACCTC
190 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
2587025 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
255 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
2587090 TGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCT
320 TGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
* * *
2587154 GAA--TTTTTATGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAAGTC
384 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
* ** **
2587217 CTTTTGAAAAAATTTT-AAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
449 CTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
2587281 ACGAGTCGT-TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
514 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
2587345 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGA
579 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * **
2587409 TCCATGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAGTGCCCACCCGTTCGCTCGTTTCGTCGG
644 TCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * *
2587474 TTGGCTTAGGCATACAGAGTTCATTCCTAGTGTAAGATCAGATTGGACCAAGGGTTGCACTAGCA
709 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGA-CGAGGGTTGCAGTAGCA
* * * * * *
2587539 AGATCGACAACACGTTGGCGGGGA-CC-GATCGAT-CCC-GCTTGCACATCCTGCCCCT
773 GGATCGACAGCACATAGG-GGGGACCCGGCT-GATCCCCGGCTTGCGCATCCTGCCCCT
2587594 TTGGTCGACT
Statistics
Matches: 4690, Mismatches: 482, Indels: 222
0.87 0.09 0.04
Matches are distributed among these distances:
880 21 0.00
881 226 0.05
882 342 0.07
883 19 0.00
884 47 0.01
885 128 0.03
886 80 0.02
887 193 0.04
888 32 0.01
889 236 0.05
890 164 0.03
891 129 0.03
892 375 0.08
893 920 0.20
894 280 0.06
895 507 0.11
896 617 0.13
897 292 0.06
898 82 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCAC
ATGCTGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCATC
GCCGGAGAACCTGACCGGCGGCATTGGGGTTCGGACGATTGGGGGGAGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGA
AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACGAGGGTTGCAGTAGCAGGATCGAC
AGCACATAGGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAAGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
Found at i:2584134 original size:26 final size:26
Alignment explanation
Indices: 2584082--2584134 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
2584072 GTTGACTTAG
* * **
2584082 GCATACGGTGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGGCTAA
*
2584108 GCATACAGAGTTCATTCCCAGGGTAA
1 GCATACAGAGTTCATTCCCAGGCTAA
2584134 G
1 G
2584135 ATTGGACCAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGGCTAA
Found at i:2585004 original size:26 final size:26
Alignment explanation
Indices: 2584974--2585026 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2584964 GTTGACTTAG
*
2584974 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2585000 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2585026 G
1 G
2585027 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2586778 original size:26 final size:26
Alignment explanation
Indices: 2586749--2586801 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2586739 GTTGACTTAG
* * *
2586749 GCATACGAAGTTTATTCTCGGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2586775 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2586801 G
1 G
2586802 ATCAGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2593322 original size:24 final size:24
Alignment explanation
Indices: 2593272--2593344 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 24
2593262 GTTGACTTAG
2593272 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT--CAGTCTAA
2593298 GCATACGGAGTTCATTCAGTCTAA
1 GCATACGGAGTTCATTCAGTCTAA
*
2593322 GCATAC--AGTTCATTCAGTGTAA
1 GCATACGGAGTTCATTCAGTCTAA
2593344 G
1 G
2593345 ATGATCGGAC
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
22 16 0.35
24 14 0.30
26 16 0.35
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
GCATACGGAGTTCATTCAGTCTAA
Found at i:2594193 original size:26 final size:26
Alignment explanation
Indices: 2594153--2594204 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2594143 CCGCATGTGC
* *
2594153 ATACGGAGTTTATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
*
2594179 ATACGAAGTTCATTCCCAGTGTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
2594205 TCGGGTCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:2597298 original size:895 final size:894
Alignment explanation
Indices: 2594151--2599948 Score: 7748
Period size: 895 Copynumber: 6.5 Consensus size: 894
2594141 GTCCGCATGT
* * ** *
2594151 GCATACGGAGTTTATTCCCAGTCTAAGAATACGAAGTTCATTCCCAGTGTAAGATCGGGTCGGAC
1 GCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGAC
* * * *
2594216 TGAGGGCTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTTTTT-CACCTG
66 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTGC-CC-G
*
2594280 GGG---CAT--------CATCGCTGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATT-GGG
129 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATTGGGG
*
2594333 GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
194 GGC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2594398 ATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
258 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
2594462 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
*
2594527 CTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
2594592 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAA-CGTAAAAAGTTTCAAAAAT
453 TGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
2594656 --TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
518 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* *
2594719 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCAC
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCAC
* * * *
2594784 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAGAGTAGTGCTCGCCCACC
648 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * * *
2594849 CGCTCGTTTCGTCGATTGGCTTAAGCATATGGAGTTCATTCCCAGCCTAAGATTAGACCTGATCG
713 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
** * * * * * *
2594914 AGGGTTATGGTAGTAGGATCGGCAACACGTAGGGGGGACCC-GACTGATCCCCGACTTGGGCATC
778 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGGTC-GATCCCCGACTTGCGCATC
*
2594978 CTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
842 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
2595031 GCACACAGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCAGA-CAGGA
1 GCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCA-GA
* *** * **
2595095 TCGAGGGTTTTAGGTGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTTTGCCCG
65 CCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA-TTTTTTTTTGCCCG
* * * * * * * *
2595160 AGGCACCTTCGCCTGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGACGAATGGGG
129 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATTGGGG
2595225 GGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
194 GGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
** *
2595290 TCCCTCATC-AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
259 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
2595354 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCATAA-GGTCACAAAATCCTGTACA
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA-AATGGTCACAAAATCCTGTACA
*
2595418 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* **
2595483 TGTGGGGCCAAAACTCCTTCTGAGAAAATTTTCAAAAAAATCCTGAACCGTAAAAAGTTTCAAAA
453 TGTGGGGCCAAAACTCCTTCTGAAAAAATTTT--AAAAAATCCCAAACCGTAAAAAGTTTCAAAA
2595548 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
516 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* * * * *
2595613 GCATGAATTTAGAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATATGCCTAAACCC
581 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCC
* * * *
2595678 ACCGACCACCCTATCGATCAACGGCTTGCGCTTCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCG
646 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG
* ** * *
2595743 TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACATAGTTCATTCCTAGTCTAAGATCAAACCAGAC
711 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * * ** *
2595808 CGATGGTTGCAGTAGCAAGATTGGTAGCACGTA-GGGGGACTTGATCGATCCCCGACTTGCGCAT
776 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGGTCGATCCCCGACTTGCGCAT
* ** * * *
2595872 CCTGGCCCTCTGGCCAACTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAG
841 CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
2595926 GCATACGAAGTTTACTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCGGACCAGAC
1 GCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGAC
* ** *
2595991 CGATGGTTGCGGGTGTGCATGCTGGGCTAGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGG
66 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTT-GCCCGG
* ** * * * *
2596056 GGCACCATCGTCGGAGCATCATCGGAGAACCTGATCGTCAACATTGAGGTTCCGACGATTGGTGG
130 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATTGG-GG
* * *
2596121 GGTCGGGGGGGCTATGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCTTTATATTGGCCCC
194 GG-C-GGGGGG-TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
2596186 TTATCCCTCATCAAACCTCAACAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTG
256 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * *
2596251 CCGCCAATAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATA
321 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
* * * *
2596316 CACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGTATCATGTCTACCA
386 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
2596381 AGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAGAAAAATCTCAAACCGTAAAAGGTTTCAAA
451 AGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTA-AAAAATCCCAAACCGTAAAAAGTTTCAAA
* *
2596446 AATCATCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCAT
515 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* *
2596511 TGTATGAATTTACAAGACATAAAAATGGCATTGG-ATGGCAAAAATATGAAGATGTACCTAAACC
580 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACC
* * * *
2596575 CACCTGCCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCCCCC
645 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * **
2596640 GCCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCAGACTGGA
710 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * *
2596705 CTGAGGGTTGCGGCAGCTGGATCGGCAGCACACAGGGGGGGACCCGGTCGATCCTCGACTTGCGC
775 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA-GGGGGGACCCGGTCGATCCCCGACTTGCGC
* * *
2596770 ATCCTGCCCCTCTGGCCAGTTGAGCG-GCGCACGCTCGTTTCGTGGGTTGACTTAG
839 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
2596825 GCATACGGAGTTCATTCCC-GATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGA
1 GCATACGGAGTTTATTCCCAG-TCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGA
* * ** * *
2596889 CCGAGGGGTGTGGGTGCACATGCTGGGCTCAAGCATGTGTTGGTGCCGCATTTTTTTTTGCCCGG
65 CCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTGCCCGG
* * * * * **
2596954 GGCACCATCGCCGGAGCATCGCCAGAGAACCTAACCGGCGCCATTGGGATTCTGGTGATTGGGGG
130 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATT-GGGG
* * *
2597019 GGCGGGGGGTATACACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
194 GGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
2597084 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
259 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* **
2597149 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGACCACAAAATCCTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* * * * *
2597214 TTCGAGTTTTTAGCTAAATTTTTTTATGCATGCCAACATAAATACAAGCATCACGTCTGCCAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
2597279 TTGGGGACAAAACTCCTTCTGAAAAAAGTTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAAT
454 GTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
* *
2597344 -AGTGAAAAGTAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
518 CA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
*
2597408 TATGAATTTACAAGCCATAAAAAAGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCA
582 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCA
* * * *
2597473 CCTACCACCTTATCGATCCACGGCTTACGCATCCCGCCTCTCTGGCAGGCGTAGTGCCTGCCCGC
647 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * *
2597538 CCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTTATTCGCAGTCTAAGATTAGACCAGACC
712 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * * *
2597603 AAGGGTTGTGGCAGCAGGGTCGGTAGCACG-TGGGAGGGACCCGGCCGATCCCCGGCTTGCGCAT
777 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGG-GGGACCCGGTCGATCCCCGACTTGCGCAT
** * *
2597667 CCTGCCCCTCTGGTTGGTTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAG
841 CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
2597721 GCATAC-GAGTTCATTCCCAGTCTAAGCCTATGGAGTTCATTCGCAGTGTAAGATTC-GACC-GA
1 GCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGA-TCGGACCAG-
* * * *
2597783 ACCGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCATATTTTTTTTTGCTCA
64 ACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTGCCCG
* * * * * *
2597848 GGGCACCATCGTCAGAGCATTGCCGGAGAACCTGACCGGTGACATTGGGGTTCTTG-GGATT-GG
129 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTC-CGACGATTGGG
* *
2597911 GGG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCT
193 GGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* ** *
2597975 ATCCCTCATGAAACCTGGAGAACTCACACCCCCTT-AAGAGCATTTGAGATTTTATAGGTTTGCT
258 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
2598039 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATGCTGTACT
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * *
2598104 CTTCGAGTTTTTAGTTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * **
2598169 TGTGGGACCAAATCTCCTTCTGAAAAAATTTTAAACAAATCCCAAACCAT-AAAAGTTTTGAAAA
453 TGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA-AAATCCCAAACCGTAAAAAGTTTCAAAAA
* *
2598233 TCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
517 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* * * * *
2598298 CATGAATTTAGAAGCCATAAAAATGGCATTAGCATGGTAGAAATATGAAGATGTGCCTAAACCCA
582 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCA
* * * * * * *
2598363 CCTACCACCCTATCGATCTACGACTTGCGCATCCCGCCTCTCTTGTCGGCGTAATGCCCGTCGGC
647 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* *
2598428 CCGCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCTA-TCTAAGATC-GAACCCGA
712 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAG-ACCAGA
*** * * * * * *
2598491 CCGAGGGTCATGACAGCAGGATCGACAGTACACAGGGGGGA-CCGG-CTGATCCTC-AGCTTACG
775 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGGTC-GATCCCCGA-CTTGCG
* * * *
2598553 CATCTTACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
838 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
2598610 GCATACGAAGTTTATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGACCAGAC
1 GCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGAC
* * * * ** *
2598675 CGATGGTTGCGGGTGCGCATGCTGGGCTTGGGCATGTGTTGGTGCTGCATTTTTTTTTCACCCGG
66 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTT-GCCCGG
* * * * * * *
2598740 GGCACCATCGCCGGAGCATCACCGAAGAACCTAACCGGCGGCATTGGGCTTCCGGCGATT-GGAG
130 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATTGGGGG
* * *
2598804 GCGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTAT
195 GCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
2598869 CCCTCATCAAACCTTGAA-AACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTCCTG
260 CCCTCATCAAACC-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
2598933 CCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
*
2598997 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
2599062 GTGGGGCCAAAAATCCTTCTGAAAAAATTTAAAAAAAATCCCAAACCATAAAAAGTTTCAAAAAT
454 GTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
* * * * *
2599127 CATAAAAAATAAAAAACGAGTCATTTTGCCATGGAACTTCACATGAAGGCTTAAGGGACCATTGT
518 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* ** *
2599192 ATGAATTTACAAGCCTTAAAAATGGCATTGGCACAGCAAAAATATGAAGATGTGCCTAAACCCAT
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCAC
* * * * * * * * *
2599257 CTACCACCCTATCGATCCACGGCTGGCGCGTCCCACCTTTTTGGCCGGCGTAATGCCCACCGGCT
648 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * ** *
2599322 CGCGCGTTTCATCGGTTGGCATCGGCATACGGAGTTCATTCCCAGTATAAGATCAGACTGGATCG
713 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* ** * * * *
2599387 AGGGTTGCGGCAGCATGATCAACAGCACGCAGGGGGGGACTCGATCAATCCCCGACTTGCACATC
778 AGGGTTGCGGCAGCAGGATCGGCAGCACGCA-GGGGGGACCCGGTCGATCCCCGACTTGCGCATC
* * * * ** *
2599452 CTACGCCTCTAGTCGGCTGAGCGCCTACACGCTCGTTTCGTCGGTTGACTTAG
842 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
2599505 GCATGCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTGTAAGATCGAATCGGAT
1 GCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGAC
* * * **
2599570 CGAGGGTTACGGGTGCACATGCTTGGCTCGGGCATGTGCTGGTGCCATATTTTGTTTTCACCCGG
66 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTT-TTTTTGCCCGG
* * * * *
2599635 GGAACCATCACC-GA--A-------A-AACCTGACAGGCGGCATTGGGGTTCCGACGATTAGGGG
130 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATTGGGGG
* * *
2599689 GCAGGGGGTGTGCGA-ACATGATGTGCGATGGATGCTGGTTCTTGGCCCTTATATTGGCCCCCTA
195 GCGGGGGGTGTGC-ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
2599753 TCCCACATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTG
259 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
2599818 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
*
2599883 TTTGAGTCTTTT-GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
389 TTCGAGT-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
2599947 TG
453 TG
2599949 AGCGCCCGCA
Statistics
Matches: 4329, Mismatches: 515, Indels: 142
0.87 0.10 0.03
Matches are distributed among these distances:
879 1 0.00
880 99 0.02
881 11 0.00
882 1 0.00
883 2 0.00
884 32 0.01
885 141 0.03
886 97 0.02
887 4 0.00
888 1 0.00
889 72 0.02
890 389 0.09
891 537 0.12
892 321 0.07
893 335 0.08
894 43 0.01
895 969 0.22
896 486 0.11
897 2 0.00
898 226 0.05
899 316 0.07
900 244 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGAC
CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTGCCCGGG
GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATTGGGGGG
CGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGT
GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
GTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGC
CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:2598639 original size:26 final size:26
Alignment explanation
Indices: 2598610--2598662 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2598600 GTTGACTTAG
* *
2598610 GCATACGAAGTTTATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
2598636 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2598662 G
1 G
2598663 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2599541 original size:26 final size:26
Alignment explanation
Indices: 2599505--2599557 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2599495 GTTGACTTAG
*
2599505 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2599531 GCATACGGAGTTCATTCTCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2599557 G
1 G
2599558 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2600013 original size:26 final size:26
Alignment explanation
Indices: 2599983--2600035 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2599973 GTTGACTTAG
2599983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2600009 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2600035 G
1 G
2600036 ATTGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2600390 original size:489 final size:478
Alignment explanation
Indices: 2599469--2600437 Score: 1431
Period size: 489 Copynumber: 2.0 Consensus size: 478
2599459 TCTAGTCGGC
* * * *
2599469 TGAGCGCCTACACGCTCGTTTCGTCGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCA
1 TGAGCGCCCACACACTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
2599534 TACGGAGTTCATTCTCAGTGTAAGATCGAATCGGATCGAGGGTTACGGGTGCACATGCTTGGCTC
66 TACGGAGTTCATTCCCAGTGTAAGATCGAATCGGACCAAGGGCTACGGGTGCACATGCTGGGCTC
* * *
2599599 GGGCATGTGCTGGTGCCATATTTTGTTTTCACCCGGGGAACCATCACCGAAAAACCTGACAGGCG
131 AGGCATGTGCTGGTGCCACATTTTGTTTTCACCCGGGGAACCATCACCGAAAAACCTGACAGACG
*
2599664 GCATTGGGGTTCCGACGATTAGGGGGCAGGGGGTGTGCGAACATGATGTGCGATGGATGCTGGTT
196 GCATTGGGGTTCCGACGATTAGGGGGCAGGGGGTGTGCGAACATGATGTGCGATGGATGCTGGTA
2599729 CTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGC
261 CTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGC
*
2599794 ATTTAAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
326 ATTTAAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
2599859 AAATGGTCACAAAATCCTGTACACTTTGAGTCTTTTGCTGAATTTTTTTGTGCATGCCAACAAAA
391 AAATGGCCACAAAATCCTGTACACTTCGAGTCTTTTGCTGAATTTTTTTATGCATGCCAAAAAAA
2599924 ATACAAGGATCACGTCTACCAAG
456 ATACAAGGATCACGTCTACCAAG
* *
2599947 TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
1 TGAGCGCCCACACACTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* **
2600012 TACGGAGTTCATTCCCAGTGTAAGATTGAA-CTGGACCAAGGGCTGTGGGTGCACATGCTGGGCT
66 TACGGAGTTCATTCCCAGTGTAAGATCGAATC-GGACCAAGGGCTACGGGTGCACATGCTGGGCT
* * * *
2600076 CAGGCATGTGCTGGTGCCGCATTTTTTTTTCACCCGGGGCACCATCGCCGGAACATCGTCGGAGA
130 CAGGCATGTGCTGGTGCCACATTTTGTTTTCACCCGGGGAACCATCACC-G-A-A-------A-A
* * *
2600141 ACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGCGGGGGGGTGTGCGCACATGATGTGCG
184 ACCTGACAGACGGCATTGGGGTTCCGACGATTAGGGGGC-AGGGGGTGTGCGAACATGATGTGCG
* * * * *
2600205 ATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
248 ATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCAAGAACTCAAAC
* * *
2600270 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAATGG
313 CCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
*
2600335 GGACATTTTTTTCAAATGGCCACAAAATCCTGTACACTTCGAGT-TTTTAGCTGAATTTTTTTAT
378 GGACACTTTTTTCAAATGGCCACAAAATCCTGTACACTTCGAGTCTTTT-GCTGAATTTTTTTAT
*
2600399 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
442 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
2600436 TG
1 TG
2600438 TGGCGCCAAA
Statistics
Matches: 437, Mismatches: 40, Indels: 17
0.88 0.08 0.03
Matches are distributed among these distances:
477 1 0.00
478 156 0.36
479 1 0.00
480 1 0.00
481 1 0.00
488 11 0.03
489 266 0.61
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.27
Consensus pattern (478 bp):
TGAGCGCCCACACACTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTGTAAGATCGAATCGGACCAAGGGCTACGGGTGCACATGCTGGGCTC
AGGCATGTGCTGGTGCCACATTTTGTTTTCACCCGGGGAACCATCACCGAAAAACCTGACAGACG
GCATTGGGGTTCCGACGATTAGGGGGCAGGGGGTGTGCGAACATGATGTGCGATGGATGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGC
ATTTAAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGCCACAAAATCCTGTACACTTCGAGTCTTTTGCTGAATTTTTTTATGCATGCCAAAAAAA
ATACAAGGATCACGTCTACCAAG
Found at i:2600915 original size:26 final size:26
Alignment explanation
Indices: 2600879--2600931 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2600869 GTTGACTTAG
* *
2600879 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
*
2600905 GCATACAGAGTTCAATCCCAGTGTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
2600931 G
1 G
2600932 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:2603403 original size:896 final size:895
Alignment explanation
Indices: 2599947--2606321 Score: 7874
Period size: 896 Copynumber: 7.1 Consensus size: 895
2599937 GTCTACCAAG
* *
2599947 TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * ** * * *
2600012 TACGGAGTTCATTCCCAGTGTAAGATTGAACTGGACCAAGGGCTGTGGGTGCACATGCTGGGCTC
66 TACAGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * *
2600077 AGG-CATGTGCTGGTGCCGCATTTTTTTTTCACCCGGGGCACCATCGCCGGAACATCGTCGGAGA
131 -GGACATGTGCTGGTGCCACATTTTTTTTT-GCCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
2600141 ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGCGGGGGGGTGTGCGCACATGATGTGCGA
194 ACCTGATCGGCGGCATTGGGCTTCCGACGATTGGGGG-GGGGGGGTGTGCGCACATGATGTGCGA
*
2600206 TGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
258 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
2600271 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAATGGG
323 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
2600336 GACATTTTTTTCAAATGGCCACAAAATCCTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTATG
388 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTGTG
* ** *
2600400 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTGTGGCGCCAAAACTCCTTCTGAAAAAAT
453 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAAT
* **
2600465 TTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGGGAACGAGTCGTCTTG
518 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
** *
2600530 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACAAATTTACAAACCATAAAAATGGCAT
583 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
2600595 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTGCG
648 TGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
2600660 CAT-CCACCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAT
713 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
2600724 ACGGAGTTCATTCCCAATCTAAGATCAGACCAAAC-CAGGGGTTGC-AGTAGTAGGATCGGTAGC
778 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA-GGGTTGCGA-TAGTAGGATCGGCAGC
* * * * * *
2600787 ACGTATGAGGGGACCTGACCGATCCTCGGCTTGCGCATCCTGCCCCTCCGGCCGGT
841 ACGTA-GGGGGGACCCGACCGATCCTCGGCTTGTGCATCCTACCCCTTCGGCCGGC
* * *
2600843 TGAGCACCTGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * ** * * * *
2600908 TACAGAGTTCAATCCCAGTGTAAGATCGGACCGGGTCGAGAGTTACGGGTACACATGCTAGGCTC
66 TACAGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * * *
2600973 GGGCATGTGCTGGTGCTATATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCG-CTGGAGAA
131 GGACATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCATCGTC-GGAGAA
** * *
2601037 CCTGATTAGCGGCATTGGGGTTCCGACGATTGGGGGGTGGGGGGGTGTGCGCACATGGTGT-CTG
195 CCTGATCGGCGGCATTGGGCTTCCGACGATT-GGGGG-GGGGGGGTGTGCGCACATGATGTGC-G
* *
2601101 ATGGGTGCTGGTACTTGTCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACAC
257 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
2601166 CCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
322 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
2601231 GGACACTTTTTCCAATTAGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGT
387 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTGT
* * *
2601296 GCATGCCAACAAAAATACAACGATCACATCTAGCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
452 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAA
* * * *
2601361 TTGTAGAAAAAA-CCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
517 TTTTA-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
2601425 TGCCATGAAACTTCACATGAAGGCTTAAGGGGACCATTTGTCCAGGAATTTACGAGCCATAAAAA
581 TGCCATGAAACTTCACATGAAGGCTTAA-GGGACCA-TTGT--ATGAATTTACAAGCCATAAAAA
* *
2601490 TGGCATGTGCCATGGCCAAAAAATCATGAAGATGTGCATAAA-CCACCTACCACCCGTATCGATC
642 TGGCAT-TGGCATGG-C-AAAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCC-TATCGATC
* * * *
2601554 CAACGGCTTGCGCATTCCCGCCTATCTCTGGCCAGGACATAGTTCTCG-CCGCACCGCTCATTTC
702 C-ACGGCTTGCGCA-TCCCGCC--TCTCTGGCC-GG-CGTAGTGCCCGCCCGC-CCGCTCGTTTC
* * *
2601618 GTTCGGTTGGACTTA-GCATTTATGGCTGGAGTTCATTTCTCAGTCTAAGATCAGACCGGATTGA
760 G-TCGGTTGG-CTTAGGCA--TA---C-GGAGTTCA-TTCCCAGTCTAAGATCAGACCAGACTGA
* ** *
2601682 GGCG--G-G-TAGTAGGATC-ACAGCAC--ACAGGGGACCCGACCGATCCTCAGCTTTGTGCATC
816 GG-GTTGCGATAGTAGGATCGGCAGCACGTAGGGGGGACCCGACCGATCCTCGGC-TTGTGCATC
* * **
2601740 CTCCATGCCCGTTTGGCTAACCGAA
879 CT--A--CCCCTTCGG----CCGGC
* * *
2601765 TGAGAGCCCGCACGCTCG-TTCG-GGGTTGAAATTA-GCATACGGGGTTCATTCCCAGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTG-ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *
2601827 ATACGGAGTTCATTCCCAG-GACAAGATCAGATC-GAACAGAGGGTTGCGGGTGCACATGCTGGG
65 ATACAGAGTTCATTCCCAGTG-TAAGATCGGACCAG-ACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
2601890 CTC-GAGCATGTGCTGGTGCCATATTTTTTTTCGCTCGGGGCACCATCGCCAGAGCATC-ACTGG
128 CTCGGA-CATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCATCGTC-GG
* *
2601953 AAAACCTGA-CTGGCGGCATTGGGCTTCCGACAATTGGGGGACGGGGGGGTGTGCGCACATGATG
191 AGAACCTGATC-GGCGGCATTGGGCTTCCGACGATTGGGGG--GGGGGGGTGTGCGCACATGATG
*
2602017 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCCTATCCCTCATCAAACCTTGAGAACT
253 TGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
2602082 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTGA
317 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
2602147 AATGGGGACACTTTTTTCAAATGGTCAGAAAATCCTGTACACTTCGACTTTGTAGCT-AAATTTT
382 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAATTTT
* *
2602211 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCGAAACTCCTTC--A
447 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACTCCTTCTGA
* * * * * * ** *
2602274 AAAATTTTTTTAAAAAGTCACAAATCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGT
512 AAAA-ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
2602339 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
576 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
2602404 ATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
641 ATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
2602469 GCTTGCACATCCTGCCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCT
706 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* **
2602534 TAGGCATACGGAGTTCATT-CTAGTCTAAGATCAGACCAGACCAAGGGTTGCGATAGTAGGATCG
771 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGTAGGATCG
* * * * * * *
2602598 GTAGCACGTATGGGGGGACCAGATCGATCCCCGGCTTGCGCATCCTACCCCTTCGACCGAC
836 GCAGCACGTA-GGGGGGACCCGACCGATCCTCGGCTTGTGCATCCTACCCCTTCGGCCGGC
* * * * *
2602659 TGAGCGCTCGTAAGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
2602724 TACAGAGTTCTTTTCCAGCGTAAGATCAGACCAGACCGAGGGTTGTGGGTGCACATGCTAGGCTC
66 TACAGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * *
2602789 GGACATGTGCTGGTGCCGCATTTTTTTTTGTCCGGGGCACCATCACCGGAGCATCGTCGGAGAAC
131 GGACATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* *
2602854 CTAATCGGCGGCATTGGGCTTCCGACGATTGGGGGGTAGGGGGTGTGCGCACATGATGTGCGATG
196 CTGATCGGCGGCATTGGGCTTCCGACGATTGGGGGG-GGGGGGTGTGCGCACATGATGTGCGATG
* *
2602919 GGTGCTGGTACTTAGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
260 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
2602984 TTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGA
325 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
2603049 CACTTTTTTCAATTGGTCACAAAATCCTGTACACTGCGAGTTTTTAGCTGAATTTTTTTTGTGCA
390 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTGTGCA
* * * * * * * *
2603114 TACCAACAAAAATGCAAGGATCACATCTAGCAAGTTTGGGGCCAAAACACCTTTTGAGAAAATTG
455 TGCCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTT
* * *
2603179 TAAAAAAAACTCGAACCGTAAAAAGTTTCAGAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
520 TAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
2603244 ATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTAAAAGCCATAAAAATGGCATAG
585 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
2603309 GCACGGCAAAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
650 GCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
2603374 TCCCGCCTCTTTGGCCGGTGTAATGCCCGCCCGCCCTCTCGTTTTGTCAGTTGGCTTAGGCATAT
715 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * ** * *
2603439 GGAGTTCATTCCCAGTCTAAAATCGGACCAGATTGGGGGTTGCGGCAGCAAGATC-GCA-CACGT
780 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGTAGGATCGGCAGCACGT
* * * * * *
2603502 AGCGCGGGCAACCCAACGGATCCCCGGCTTGTGCATCGCTGCCCGTAT-GGCCGAGC
845 AG-G-GGG-GACCCGACCGATCCTCGGCTTGTGCATC-CTACCCCT-TCGGCCG-GC
* *
2603558 TGATGCGTCCGCACGGCTGCCGTTTCGTGGGATTGACTGTAGGCATACGGGGTTCATTCCCTA-T
1 TGA-GCGCCCGCAC-GCT--CGTTTCGTGGG-TTGACT-TAGGCATACGGAGTTCATTCCC-AGT
* *
2603622 CT-AGCATAC-GGGTTTTCATTCCCAGTGCCAAGATCGGACC-GAACCGAGGG-TGCGGGGTGCA
59 CTAAGCATACAGAG--TTCATTCCCAGTG-TAAGATCGGACCAG-ACCGAGGGTTGC-GGGTGCA
* * * ** * *
2603683 CACGCTAGGCTC-GAGCATTGTGCTGGTGCCATATTTTTTTTCACCCGGGGC-CCATTCACCAGT
119 CATGCTGGGCTCGGA-CA-TGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCA-TCGCC-GG
** *
2603746 AGCATTAC-TAAGAGAACCTGACTTGGCGGCAATT-GGCTT-CGAC-ATTGCGAGGGGGCGGTGG
180 AGCA-T-CGTCGGAGAACCTGA-TCGGCGGC-ATTGGGCTTCCGACGATT--G-GGGGG-GG-GG
**
2603807 GGTGTGCGCACATGATGTGCGATAAGTGCTGGTACTTGGCCCTTATA-TGG--CCCTATCCCTCA
236 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
2603869 TTCAAACCTCGAGAACTCACA-CCCCTTAAAGA-CAGTTTGAGATGTTACAGGTTT-CTGCCAGT
301 -TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGT
* *
2603931 AGCCATTAAAG-GTTTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCCTGTACACTTCGA
364 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
* * * *
2603995 GTTTTTAGCT-AAATTTTTCTATACATGCCAAGAAAAATACAAGGATCACATCTACCAAGTGTGG
429 GTTTTTAGCTGAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTGTGG
* *
2604059 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATG
494 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
2604124 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
559 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* * * *
2604189 ATTTACAAGCCATAAAAATGG-ATTGGCAAGGCATAAATTTGAAGAAGTGCCTAAACCCACCTAC
624 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
* * ** *
2604253 CACCCTATCGATCCACGGCTTGTGCATCCCACCTCTCTGGCCAACGTAGTGCCCACCCGCCCGCT
689 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
* * *
2604318 CGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTAAGGG
754 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
* ** * * * * * *
2604383 TTACGGCAATAGGATCAGCAACACGTAGGGGGGGACCCGGCCGATCCTCGACTTGTGCATCCTGC
819 TTGCGATAGTAGGATCGGCAGCACGTA-GGGGGGACCCGACCGATCCTCGGCTTGTGCATCCTAC
*
2604448 CCC-ACTGGCCGGC
883 CCCTTC-GGCCGGC
* * * * *
2604461 TGAGCGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGGGTTCATTCCTAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
2604526 TACTGAGTTCATTCCCAGGGTAAGATCGGACCACACCAAGGGTTGCAGGTGCACATGCTGGGCTC
66 TACAGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * * ** *
2604591 GGGCATGTGCTGGTGTCGCATTTTTTTTTGCCCGGGGCACCATTGCCGGAGCATCACCGGATAAC
131 GGACATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* * * * * * *
2604656 CTGACCGACAGCATTGGGGTTCC-AGTGATTGGGGGCGGGGGGTGTGCGCACATGATGTGTGATG
196 CTGATCGGCGGCATTGGGCTTCCGA-CGATTGGGGGGGGGGGGTGTGCGCACATGATGTGCGATG
2604720 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACA-CCC
260 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * **
2604783 CTTAAAGAGCATTAGAGATTTTACAGGTTCGCTGTCAGTAGCCATTAAAGTGTTTGAAATTAGGA
325 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
2604848 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGAT-AAATTTTTTTGTGCA
390 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTGTGCA
* * * *
2604912 TGCCAAGAAAAATACAGGGATCACGTCTACCAAGTGTAGGGCCAAAACTCCTTCTGAAAAAATTT
455 TGCCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTT
*
2604977 TAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
520 TAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
2605042 ATGAAACTTCACATGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCATTG
585 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
2605107 GAATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
650 GCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * * * * *
2605172 TCCCACCTCTCTGGTTGACGTAGT----GCCCACCTGCTCGTTTCATCGATTGGCTTAGGCATAC
715 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * ** * * *
2605233 GGAGTTCATTCCTAGTCTAAGATCAGACCAGA-TGAGGGTTGTGGTAGCAGCTTCGGTAGCATGC
780 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGTAGGATCGGCAGCACGT
** * * *
2605297 AGGGGGGGACCCGGTCGATCC-CTAGCTTGAGCGTCCTACCCCTAT-GGCCGGC
845 A-GGGGGGACCCGACCGATCCTC-GGCTTGTGCATCCTACCCCT-TCGGCCGGC
* * * * * *
2605349 TGAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTGCATTCCTAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
2605414 TACAGAGTTCATT-CAAGTGCAAGATTGGATCAGACCGAAGGTTACGGGTGCACATGCTGGGCTC
66 TACAGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * *
2605478 GGGCATGTGCTGGTGCCACA-TTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCAGAGAAC
131 GGACATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* ** *
2605542 CTGATCGACGGCATTGGGCTTCCGGTGATTGGGGGGCAAGGGGGTGTGCGCACATGATGTGCGAT
196 CTGATCGGCGGCATTGGGCTTCCGACGATTGGGGGG--GGGGGGTGTGCGCACATGATGTGCGAT
* *
2605607 GGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATGAAACCTCGAGAACTCACACCC
259 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* **
2605672 CCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGTTAGTAGCCATTAAAGTGTCTGAAATGGGG
324 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
2605737 ACACCTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGC
389 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTGTGC
* * *
2605801 ATGCCAACAAAAATACAAGGATCACTTCTACCATGTGTGGGGCCAAAAATCCTTCTGAAAAAATT
454 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATT
* * *
2605866 TTTAAAAAATC-CTGAACCGTAAAAAGTTTTAAAAATCATGATAAATAGAAAACGAGTCGTCTTG
519 TTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
2605930 CCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGACTTTACAAGCCATAAAAATGGCAT
583 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
2605995 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACG
648 TGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
2606060 CATCCCGCCTCTCTAGTCGGTGTAGTG-CCGCCCGCCCGCTTGTTTCGTCGATTGGCTTAGGCTT
713 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
2606124 ACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-AGCAGTAGAATCAGCAGCA
778 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGA-TAGTAGGATCGGCAGCA
** * * *
2606188 CGTAAGGGGGGACCCGACCGATCCTCGATTTATGCGTCCT--GCCTGTCTGGCCGGC
842 CGT-AGGGGGGACCCGACCGATCCTCGGCTTGTGCATCCTACCCCT-TC-GGCCGGC
** * ** *
2606243 TGAGCATCCGCACGCTCATTTCGTTTGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
2606308 TACAGAGTTCATTC
66 TACAGAGTTCATTC
2606322 AAGTGCAAGA
Statistics
Matches: 4741, Mismatches: 583, Indels: 311
0.84 0.10 0.06
Matches are distributed among these distances:
886 67 0.01
887 60 0.01
888 204 0.04
889 119 0.03
890 422 0.09
891 36 0.01
892 278 0.06
893 155 0.03
894 289 0.06
895 219 0.05
896 812 0.17
897 253 0.05
898 51 0.01
899 31 0.01
900 12 0.00
901 29 0.01
902 28 0.01
903 40 0.01
904 52 0.01
905 266 0.06
906 249 0.05
907 107 0.02
908 34 0.01
909 61 0.01
910 54 0.01
911 42 0.01
912 83 0.02
913 33 0.01
914 22 0.00
915 28 0.01
916 5 0.00
917 14 0.00
918 24 0.01
919 94 0.02
920 299 0.06
921 152 0.03
922 17 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
TACAGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
GGACATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
CTGATCGGCGGCATTGGGCTTCCGACGATTGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTT
AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGTAGGATCGGCAGCACGTA
GGGGGGACCCGACCGATCCTCGGCTTGTGCATCCTACCCCTTCGGCCGGC
Found at i:2604549 original size:26 final size:26
Alignment explanation
Indices: 2604497--2604549 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
2604487 GTTGACTTAG
* * *
2604497 GCATACGGGGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
* *
2604523 GCATACTGAGTTCATTCCCAGGGTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
2604549 G
1 G
2604550 ATCGGACCAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:2606918 original size:584 final size:584
Alignment explanation
Indices: 2605758--2606922 Score: 1665
Period size: 584 Copynumber: 2.0 Consensus size: 584
2605748 AAATGGTCAC
*
2605758 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
1 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGAT
* ** * * * *
2605823 CACTTCTACCATGTGTGGGGCCAAAAATCCTTCTGAAAAAATTTTTAAAAAATCCTGAACCGTAA
66 CACATCTACCAAATGTAGGGCCAAAAACCCTTCTGAAAAAATTTTAAAAAAATACTGAACCGTAA
* *
2605888 AAAGTTTTAAAAATCATGATAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
131 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* *
2605953 TAAGGGACCGTTGTATGACTTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
196 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
* * * *
2606018 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGCCTCTCTAGTCGGTGT
261 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACACATCCCGCCTCTCTAGCCGGCGT
* * * *
2606083 AGTGCCGCCCGCCCGCTTGTTTCGTCGATTGGCTTAGGCTTACGAAGTTCATTCCCAGTCTAAGA
326 AGTACAGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
*
2606148 TCAGACCGGACCGAGGGTTGCAGCAGTAGAATCAGCAGCACGTAAGGGGGGACCCGACCGATCCT
391 TCAGACCGGACCGAGGGTTGCAGCAGTAGAATCAGCAGCACGTAAGGGGGGACCCGACCGATCCC
* * * * * * * **
2606213 CGATTTATGCGTCCTGCCTGTCTGGCCGGCTGAGCATCCGCACGCTCATTTCGTTTGTTAACTTA
456 CGACTTATGCATCCTGCCTGTCAGGCCGACTAAGCACCCACACGCTCATTTCGTGGGTTAACTTA
* *
2606278 GGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCAAGTGCAAGATCAGACAGCA
521 GGCATACAGAGTTCATTCCCAGTCTAAGCATACAGACTTCATTCAAGTGCAAGATCAGACAGCA
2606342 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGAT
1 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGAT
* * *
2606407 CACATCTACGAAATTTAGGGCCAAAACCCCATT-TGAAAAAATTTTAAAAAAATACTGAACCGTA
66 CACATCTACCAAATGTAGGGCCAAAAACCC-TTCTGAAAAAATTTTAAAAAAATACTGAACCGTA
* * * *
2606471 AAATGTTTCAGAAATCATGAAAAATAGAAAAGGAGTCGTTTTGCCATGAAACTTCACATGAAGGC
130 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
*
2606536 TTAAGGGACCATTGTATGAATTTACAAGCCATAAGAATGGCATTGGCATGGCAGAAATATGAAGA
195 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGA
* * *
2606601 TGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCG
260 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACACATCCCGCCTCTCTAGCCGGCG
* *
2606666 TAGTACAGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC-ATAGTTCATTCCCAGTCTAA
325 TAGTACAGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * * ** * * *
2606730 GATCAGTCTGGACTGAGGGTTGTGGTAGTAGAATC-GACAGCACG-CAGGGGGGACTCGACCGAT
389 GATCAGACCGGACCGAGGGTTGCAGCAGTAGAATCAG-CAGCACGTAAGGGGGGACCCGACCGAT
* * * * * *
2606793 CCCCGACTTGTGCATCTTG-CTCGTCAGGCCGATTAAGCGCCCACACGCTCGTTTCGTGGGTTGA
453 CCCCGACTTATGCATCCTGCCT-GTCAGGCCGACTAAGCACCCACACGCTCATTTCGTGGGTTAA
* * ** * *
2606857 CTTTGGCATACAGAGTTCATTCCTAGTCTAAGCATATGGACTTCATTCCTAGTGTAAGATCAGAC
517 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGACTTCATT-CAAGTGCAAGATCAGAC
2606922 A
581 A
2606923 AGACAGAGGG
Statistics
Matches: 511, Mismatches: 65, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
582 2 0.00
583 105 0.21
584 402 0.79
585 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (584 bp):
AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGAT
CACATCTACCAAATGTAGGGCCAAAAACCCTTCTGAAAAAATTTTAAAAAAATACTGAACCGTAA
AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACACATCCCGCCTCTCTAGCCGGCGT
AGTACAGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
TCAGACCGGACCGAGGGTTGCAGCAGTAGAATCAGCAGCACGTAAGGGGGGACCCGACCGATCCC
CGACTTATGCATCCTGCCTGTCAGGCCGACTAAGCACCCACACGCTCATTTCGTGGGTTAACTTA
GGCATACAGAGTTCATTCCCAGTCTAAGCATACAGACTTCATTCAAGTGCAAGATCAGACAGCA
Found at i:2607918 original size:26 final size:26
Alignment explanation
Indices: 2607888--2607940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2607878 GTTGACTTAG
2607888 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
2607914 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCACAGTCTAA
2607940 G
1 G
2607941 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:2608747 original size:26 final size:26
Alignment explanation
Indices: 2608717--2608769 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2608707 GTTGACTTAG
* *
2608717 GCATACAGGGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2608743 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2608769 G
1 G
2608770 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2614142 original size:884 final size:888
Alignment explanation
Indices: 2612451--2614401 Score: 2681
Period size: 884 Copynumber: 2.2 Consensus size: 888
2612441 ATGAGTTGGG
* * * *
2612451 ATGGGTACTGGTGCTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCAGGAACTTACAC
1 ATGGGTACTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * *
2612516 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAATGG
65 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
2612581 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGCTTTTAGCTGAATTTTTTTATG
130 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGCTTTTAGCTGAATTTTTTTATG
* * *
2612646 CATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTAAAAAATTTTT
195 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTAAAAAATTTTA
* * *
2612711 AAAAAATCTCGAACCATAAAATGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCAT
260 AAAAAATCTCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
2612776 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
325 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
2612841 AGGGCAAAAATACGAAGACGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTACGCATC
390 AGGGCAAAAATACGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACACATC
* * * ** * *
2612906 CCGCTTCTCTAGTCGATGTAGTGCTTGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
455 CCGCCTCTCTAGCCGACGTAGTGCCCGCCTGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGG
* ** ** * *
2612971 AGTTCATTCCCAGTTTAAGATTGGACCAGCCAAGGGTTATGGTAGTAGAATTTGCAGCACATAGG
520 AGTTCATTCCCAGTCTAAGATCAGACCAGCCAAGGGTTACAGTAGTAGAATTCGCAGCACACAGG
* * ** * *
2613036 GGGGTACCCGACCGATCCTCGGCTTGTGCATCCTGCCCATCTGGCCGGCTAAGCGCCCGCACACT
585 GGGGTACCCGACCGATCCCCGGCTTGTGCATCCTACCCATCTGGCCAACTAACCACCCGCACACT
* * * * *
2613101 CGTGTTTTGGGTTGACTTAGGCATACGAAATTCATTCACATTCTAAGCATACGGAGTTCATTCCC
650 CATGTTTTGGGTTGACTTAGGCATACAAAATTCATTCACAGTCTAAGCATACGAAGTTCAATCCC
* * *
2613166 TGTGTAAGATCGGATTGGATCGAGTGATGTGGGTGCACACACTGGGCTCGGGCATGTGCTGGTGC
715 AGTGTAAGATCGGATTGGATCGAGGGATGTGGGTGCACACACTGGGCTCGGGCATGTGATGGTGC
*** * *
2613231 CACATTTTTTTTCACCCG---GGGCA-CC-ATCA-CCGAAGAACCTTACCGACGACATTGGGGTT
780 CACATTTTTTTTCACCCGAAACACCACCCAATCATCCGAAGAACCTGACCGACGACATTAGGGTT
*
2613290 CCAACGATTGGG-GGG-GGGGGGG-TGTGCATACATGATGTGCA
845 CCAACGATTGGGAGGGCGGGGGGGATGTGCACACATGATGTGCA
*
2613331 ATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCACTCATCAAACCTCAAGAACTCACAC
1 ATGGGTACTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCAAGAACTCACAC
* * * *
2613396 CCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATAG
65 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
2613461 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTTAGTTTTTAGCTGAATTTTTTTGTG
130 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGCTTTTAGCTGAATTTTTTTATG
2613526 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAAAT
195 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-C--CT-AAAAAAT
** * *
2613591 TTTAAAAAAATCTCAAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
256 TTTAAAAAAATCTCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
2613656 CCATGAACCTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCAT
321 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * * *
2613721 TGGCATTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCA
386 TGGCAGGGCAAAAATACGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACA
* *
2613786 CATCTCGCCTCTCTAGCCGACGTAGTGCCCGTCC-GCCCGTTCGTTTCATCGATTGGCTTAGGCA
451 CATCCCGCCTCTCTAGCCGACGTAGTGCCCG-CCTGCCCGCTCGTTTCATCGATTGGCTTAGGCA
** * *
2613850 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACAGTAGTAGGA-TCGACAGC
515 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-CCAAGGGTTACAGTAGTAGAATTCG-CAGC
** * *
2613914 ACACAGAGGGGG-ACCCGATTGATCCCCGGCTTGTGCATCCTACCCTTCTGGCCAACTAACCACT
578 ACACAG-GGGGGTACCCGACCGATCCCCGGCTTGTGCATCCTACCCATCTGGCCAACTAACCACC
* *
2613978 CGCACGCTCAT-TTTTGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAAGCATACGAAGT
642 CGCACACTCATGTTTTGGGTTGACTTAGGCATACAAAATTCATTCACAGTCTAAGCATACGAAGT
* **
2614042 TCAAT-CCAGTGTAAGATTGGATTGGATCGAGGGATGTGGGTGCACATGCTGGGCTCGGGCATGT
707 TCAATCCCAGTGTAAGATCGGATTGGATCGAGGGATGTGGGTGCACACACTGGGCTCGGGCATGT
* * ** *
2614106 GATGGTGTCATATTTTTTCTTTGCCCGAAACACCATCGCCAGATCATTGCCGAAGAACCTGGCCG
772 GATGGTGCCACATTTTTT-TTCACCCGAAACACCA-C-CCA-ATCA-T-CCGAAGAACCTGACCG
* * * * *
2614171 ATGGCATTAGGGTTCCGACGATTGGGAAGGGCGGGGGGGATGTGCGCACATGATGTGCG
831 ACGACATTAGGGTTCCAACGATTGGG-AGGGCGGGGGGGATGTGCACACATGATGTGCA
* * * *
2614230 ATGGGTGCAGGTACTTAGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
1 ATGGGTACTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* *
2614294 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTGAAGTGTCTGAAATG
65 CCCT-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
2614359 GGGGCAATTTTTTCAAATGGTCACAAAATCCTGCACACTTTGA
129 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGA
2614402 TCCACGGCTT
Statistics
Matches: 933, Mismatches: 111, Indels: 35
0.86 0.10 0.03
Matches are distributed among these distances:
879 4 0.00
880 223 0.24
881 1 0.00
883 71 0.08
884 325 0.35
885 79 0.08
886 5 0.01
887 2 0.00
890 2 0.00
892 4 0.00
895 36 0.04
897 3 0.00
898 11 0.01
899 163 0.17
900 4 0.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (888 bp):
ATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGCTTTTAGCTGAATTTTTTTATGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTAAAAAATTTTAA
AAAAATCTCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
GGGCAAAAATACGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACACATCC
CGCCTCTCTAGCCGACGTAGTGCCCGCCTGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGCCAAGGGTTACAGTAGTAGAATTCGCAGCACACAGGG
GGGTACCCGACCGATCCCCGGCTTGTGCATCCTACCCATCTGGCCAACTAACCACCCGCACACTC
ATGTTTTGGGTTGACTTAGGCATACAAAATTCATTCACAGTCTAAGCATACGAAGTTCAATCCCA
GTGTAAGATCGGATTGGATCGAGGGATGTGGGTGCACACACTGGGCTCGGGCATGTGATGGTGCC
ACATTTTTTTTCACCCGAAACACCACCCAATCATCCGAAGAACCTGACCGACGACATTAGGGTTC
CAACGATTGGGAGGGCGGGGGGGATGTGCACACATGATGTGCA
Found at i:2614661 original size:26 final size:26
Alignment explanation
Indices: 2614631--2614683 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2614621 GTTGACTTAG
2614631 GCATACGAAATTCATTCCAAGTCTAA
1 GCATACGAAATTCATTCCAAGTCTAA
* * *
2614657 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAATTCATTCCAAGTCTAA
2614683 G
1 G
2614684 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCAAGTCTAA
Found at i:2615220 original size:26 final size:26
Alignment explanation
Indices: 2615184--2615234 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2615174 TGACTTAGGT
*
2615184 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
*
2615210 ATACGAAGTTCATTCCCAGTGTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
2615235 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:2616093 original size:26 final size:26
Alignment explanation
Indices: 2616064--2616116 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2616054 GTTGATTTAG
*
2616064 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
2616090 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2616116 G
1 G
2616117 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2617119 original size:896 final size:891
Alignment explanation
Indices: 2614964--2620691 Score: 6870
Period size: 897 Copynumber: 6.5 Consensus size: 891
2614954 TGGTCACAAA
* * ** *
2614964 ATCCCGCCTCTCTGGCTGATGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATA
1 ATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
2615029 CGGAGTTCATTCCCAGTGTAAGATTGGA-C-CGAATCGAGGGTTACGGCAACAAGATCGACAGCA
66 CGGAGTTCATTCCCAGTCTAAGATTGGATCAGGACT-GAGGGTTGCAGCAGCAAGATCGGCAGCA
* ** * *
2615092 CGCAGAGGGGACCCGGTCGATCCCCGGCCTGTGCAT-TCTGCCCCTC-CAGCCGGCT-AACCGCT
130 CGCAGGGGGGACCCGACCGATCCCCGGCTTGTGCATCT-TGCCCCTCTGA-CCGGCTGAA-CGC-
* * * * * *
2615154 CGCACGTTCGTTTTGTAGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACGAAGT
191 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACG-AGT
* * * * * * * *
2615219 TCATTCCCAGTGTAAGATCAGACTGGACCGAGGGTTACGGGTGTACATGCTGGGCTTGGGCATGT
255 TCATTCCCAGTGTAAGAT-GGACCGGATCAAGGGTTACAGGTGCACATGCTGGGCTCGAGCATGT
* ** * * * *
2615284 GCTGGTGTCGTATTTTTTTTCGTCTGGGGCACCATCGTCGGAGCATCGCCAGACAACCTGACCGG
319 GCTGGTGCCGTATTTTTTTTCG-CCCGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGA
* * *
2615349 CGACATTGGGGTTCCGGTGATTGGGGGGGCGGCAGGGGTGTGCGCACATGATGTGCGATGGGTGC
382 CGGCATT-GGGTTCCGGCGATT-GGGGGGCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
2615414 TGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTC-AGAACTTACACCCCCTTA
444 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTA
* * *
2615478 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAAGTGTCTGAAATGGGGACAC
508 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTGAAATAGGGACAC
*
2615543 TTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
572 TTTTTTCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * **
2615608 AACAAAAATACAAGGATCACATCTACAAAGTTTGGGGCTAAAAGTCCTTCTGAAAAAATTTTTAA
637 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAA
* * ** *
2615673 AAAACCCCAAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
702 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
2615738 AACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAT--AAA---C-----C--
767 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* ** * *
2615791 ----CACCTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCAGCTTGCGC
832 GGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
2615847 ATCCCACCTCTCTGGCCGACGTAGTGCCTGCCCGACCGCTCGTTTCGTCGGTTGGCTTAGGCATA
1 ATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * *
2615912 CGGAGTTCATTCCTAGTCTAAGATCGGAT-TGGACTGAGAGTTGCAGCAGCAAGATTGACAGCAC
66 CGGAGTTCATTCCCAGTCTAAGATTGGATCAGGACTGAGGGTTGCAGCAGCAAGATCGGCAGCAC
* * * * * * * *
2615976 GTAAGTGGGGTCCCAACCGATCCCCGGCTTGGGCA-CTTGCCCCTC-GATCGGCTGAGCGTCCGT
131 G-CAGGGGGGACCCGACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGACCGGCTGAACG-CCGC
* *
2616039 ATGCTCGTTTCGTGGGTTGATTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
194 ACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATAC-GAGTTCA
* * * *
2616104 TTCCCAGTGTAAGATCAGACCAGACCTAA-GGTTACAGGTGCACATGCTGGGCTCGGGCATGTGC
258 TTCCCAGTGTAAGAT-GGACCGGATC-AAGGGTTACAGGTGCACATGCTGGGCTCGAGCATGTGC
** * ** *
2616168 TGGTGCCACATTTTTTTTTCACCCCGGGCACCATCGTCGGAGCATTATTGGAGAACCTGACCGAC
321 TGGTGCCGTA-TTTTTTTTC-GCCCGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGAC
2616233 GGCATTGGGGTTCCGGCGATTGGGGGGCGAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
383 GGCATT-GGGTTCCGGCGATTGGGGGGC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
2616298 GGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAA
445 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
2616363 GAGCATTTGAGATTTTACAAGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTT
510 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTT
* * *
2616428 TTTCAAATGGTCACAAAATCCTGTACACTGAGTGTTTTTAGTTGAATTTTTTTGTGCATG-CAAC
575 TTTCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
2616492 AAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAA
640 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAA
*
2616557 ATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
705 ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * ***
2616622 TTCACATGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCAATAAAAATGGAATTGGCATCAC
770 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGT
* * *
2616687 AAAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATACACGGCTTGCGC
835 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* **
2616744 ATCCCACCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTACTCGTTTCGTCGGTTGGCTTAGGCATA
1 ATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** * *
2616809 CGGAGTTCATTCCAAATCTAAGATTAGA-CAGGAC-GAGGGTTGTGGCAACAAGATCGGTAGCAC
66 CGGAGTTCATTCCCAGTCTAAGATTGGATCAGGACTGAGGGTTGCAGCAGCAAGATCGGCAGCAC
* * * *
2616872 GCAGGGGGGACCCGACCAATCCCCGACTTGCGCATCTTGCCCCTCTGGCCGGCTGAACGCCGCAC
131 GCAGGGGGGACCCGACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGACCGGCTGAACGCCGCAC
* *
2616937 GCTCGTTTCGTGGGATGACTTAGGGATATGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
196 GCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATT
* * * *
2617002 CCCAGTGTAAGATGAGACCGGATCGAGGGTTGCGGGTGCACATGTTGGGCTCG-GCCATGTGCTG
260 CCCAGTGTAAGATG-GACCGGATCAAGGGTTACAGGTGCACATGCTGGGCTCGAG-CATGTGCTG
* *
2617066 GTGCCGTATTTTTTTTTTCGCCCGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGGCC-AGCT
323 GTGCCGTA--TTTTTTTTCGCCCGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGA-CG
* *
2617130 GCATTAGGGTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
384 GCATT-GGGTTCCGGCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
2617195 ACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCAC-CCCCCATTAAAGA
448 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGA
* * * * *
2617259 GCATTTGATATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGCCTGAAATGGGGACACCTTTT
512 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTT
* * * * *
2617324 TCAAATGGTCAC-AAATCATGTACACTTCGAGTTTTTTAGTTGAATTTTTTTGTGCATTCCAGCA
577 TCAAATGGTCACAAAATCCTGTACACTTAGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
2617388 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCTGAAAAAAGTTAAAAAAAA
641 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAA
* ** * * *
2617453 TCCCAAACCGTGAAAAGTTTTGAAAGTCGAGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
706 TCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
2617518 TCACATGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTA
771 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTA
*
2617583 GAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGC
836 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
2617639 ATCCCGCCTCTCTGGCCGGCATTGTGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
1 ATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * *
2617704 CGGAGTTCATTCCCAGTCTAAGATCGGGCCA-AACTGAGGGTTGCAACAGCAGGATCGGCAGCAC
66 CGGAGTTCATTCCCAGTCTAAGATTGGATCAGGACTGAGGGTTGCAGCAGCAAGATCGGCAGCAC
* ** * *
2617768 GTAGGGGGGACCCGGTCGATCCCCTGCTTGTGCAT-TCTGCCCCTCTTACCGGCTGAGCAC-CCG
131 GCAGGGGGGACCCGACCGATCCCCGGCTTGTGCATCT-TGCCCCTCTGACCGGCTGA--ACGCCG
2617831 CACGCTCGTTTCGTGGGTTGAC-T-----TA-G--G--C-TT---A--C---G-----GAGTTCA
193 CACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGAGTTCA
*
2617871 TTCCCAGTGTAAGATCGGACCGGATCAAGGGTTACAGGTGCACATGCTGGGCTCGAGCATATGCT
258 TTCCCAGTGTAAGAT-GGACCGGATCAAGGGTTACAGGTGCACATGCTGGGCTCGAGCATGTGCT
* * * *
2617936 GGTGCCGTATTTTTTTTCGCTCGGG-ATGCCATCACTGGAGCATCGCCAGAGAACCTGACCGACG
322 GGTGCCGTATTTTTTTTCGCCCGGGCA--CCATCTC-GGAGCATCGTCGGAGAACCTGACCGACG
* *
2618000 GCA-T---TT---G-G---GGGGGTCGGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTA
384 GCATTGGGTTCCGGCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
2618054 CTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
449 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
2618119 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-ACAAT-GGGAACACTTTTT
514 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATAGGG-ACACTTTTT
* * * *
2618182 TCAAATGGTCCCAAAATCCTGTACACTTCGAGTTTTCAGCTGAATTTTTTTTTGCATGCCAACAA
577 TCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* ** *
2618247 AAATACAAGGATCACATCTACCAAGTTTGAAGCCAAAAATCCTTCTGAAAAAAATTTTAAAAAAA
642 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAA-TTTAAAAAAA
* * * * *
2618312 ATCTCGAACCGTAAAACA-TTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTTCCGTGAAA
705 ATCCCAAACCGTAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
2618376 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
769 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
*
2618441 TAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGC
834 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
2618499 ATCCCGCCTCTCTGGCCGGCATTGTGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
1 ATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
2618564 CGGAGTTCATTCCCAGTCTAAGATTGGACCA-AACTGAGGGTTGCAACAGGAGGATCGGCAGCAC
66 CGGAGTTCATTCCCAGTCTAAGATTGGATCAGGACTGAGGGTTGCAGCAGCAAGATCGGCAGCAC
*
2618628 GCAGGGGGGACCCGACCGATCCCCGGCTTGTGCAT-TCTGCCCCTCTTACCGGCTGAGCAC-CCG
131 GCAGGGGGGACCCGACCGATCCCCGGCTTGTGCATCT-TGCCCCTCTGACCGGCTGA--ACGCCG
2618691 CACGCTCGTTTCGTGGGTTGAC-T-----TA-G--G--C-TT---A--C---G-----GAGTTCA
193 CACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGAGTTCA
*
2618731 TTCCCAGTGTAAGATCGGACCGGATCAAGGGTTACAGGTGCACATGCTGGGCTCGAGCATATGCT
258 TTCCCAGTGTAAGAT-GGACCGGATCAAGGGTTACAGGTGCACATGCTGGGCTCGAGCATGTGCT
* * * *
2618796 GGTGCCGTATTTTTTTTTCGCTCGGG-ATGCCATCACTGGAGCATCGCCAGAGAACCTGACCGAC
322 GGTGCCGTA-TTTTTTTTCGCCCGGGCA--CCATCTC-GGAGCATCGTCGGAGAACCTGACCGAC
* *
2618860 GGCA-T---TT---G-G---GGGGGTCGGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGT
383 GGCATTGGGTTCCGGCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
2618914 ACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
448 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
2618979 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATAGGGACACTTTTTT
513 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTT
* * *
2619044 CAAATGGTCACAAAATCCTGTGCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
578 CAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
2619109 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATC
643 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATC
** * *
2619174 CTGAACTGTAAAAAGTTTCAAAATTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
708 CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
2619239 ACATGAAGGCTTACA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGGTAG
773 ACATGAAGGCTTA-AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAG
* *
2619303 AAATATGAAGATGTACCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGC
837 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
2619358 ATCCCACCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGTATA
1 ATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * * * *
2619423 CGGAGTTCATTCCCAGTCTAACATTGGATC-GGACCAAGGGTTGCAGTAGTAGGATCGTCAACAC
66 CGGAGTTCATTCCCAGTCTAAGATTGGATCAGGACTGAGGGTTGCAGCAGCAAGATCGGCAGCAC
*** * * *
2619487 GCAGGGGGGACCCGGTTGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
131 GCAGGGGGGACCCGACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGACCGGCTGAACG-CCGCA
*
2619552 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
195 CGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATAC-GAGTTCAT
* * * *** *
2619617 TCCCAATGTAAGATCAGACCGGACCGAA-GGTTGGGGGTGCACATGCTAGGCTCGAGCATGTGCT
259 TCCCAGTGTAAGAT-GGACCGGATC-AAGGGTTACAGGTGCACATGCTGGGCTCGAGCATGTGCT
** * * * * * *
2619681 GGTGTTGCATTTTTTTTCACTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGA
322 GGTGCCGTATTTTTTTTCGC-CCGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGACGG
* * * * *
2619746 CATTAGGGTTCCGGTGATTGAGGGGGCGGGGGAGTGTGCACACATGATGTGAGATGGGTGTTGGT
385 CATT-GGGTTCCGGCGATTG-GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
2619811 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAACCCCTTAAAGAG
448 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
2619876 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
513 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTT
* * * * * *
2619941 CAAATGTTAACAAAATCCTCTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCACGCCAACAAA
578 CAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
2620006 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCTAAAAAAATTCT-AAAAAAA-
643 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT-TAAAAAAAAT
* *
2620069 CTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTT
707 CCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
2620134 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGGTAG
772 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAG
* * *
2620199 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCTACGACTTGCGC
837 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * ** *
2620254 ATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCTTGCTCGTTTCGTCAGTTGGCTTAGGCATA
1 ATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * * * * *
2620319 CAAAGGTCATTCCTAGTCTAAGATCT-GATC-GGACCGAGGGTTGC-GATAGTAGGATCGGTAGC
66 CGGAGTTCATTCCCAGTCTAAGAT-TGGATCAGGACTGAGGGTTGCAG-CAGCAAGATCGGCAGC
* * * * ** *
2620381 ACGCAGGGGGGAACCCGGCCGATCCTCGGCTTGGGCATCCTGCCCCTCTGGTCGGTTGAACGCCT
129 ACGCAGGGGGG-ACCCGACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGACCGGCTGAACGCC-
* ** * * *
2620446 GCACGCTCATTTCACGGGTTGACTTAGGCACATGGAGTTCATTCCCAGTCTAAGTATACGAAGTT
192 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACG-AGTT
* * * * * * *
2620511 CTTTCCTAGTGTAAGATTGGATCAGGCT-AATGGTTACGGGTGCACATGCTGGGCTTGAGCATGT
256 CATTCCCAGTGTAAGA-TGGA-CCGGATCAAGGGTTACAGGTGCACATGCTGGGCTCGAGCATGT
** * * *
2620575 GCTGGTGCC--ACATTTTTT-GCCTGGGGCACCATCTTCGGAGCATCATCGGAGAACCTGACCGG
319 GCTGGTGCCGTATTTTTTTTCGCC-CGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGA
* * * ** * *
2620637 TGGCATTGGGGGTTTCGGCTATTGAATGGGCCGGGGGGTTTGCGCACATGATGTG
382 CGGCATT--GGGTTCCGGCGATTG-GGGGGCGGGGGGGTGTGCGCACATGATGTG
2620692 TGTTGACATC
Statistics
Matches: 4287, Mismatches: 436, Indels: 232
0.87 0.09 0.05
Matches are distributed among these distances:
857 5 0.00
858 234 0.05
859 393 0.09
860 489 0.11
861 336 0.08
862 4 0.00
865 4 0.00
866 1 0.00
868 2 0.00
869 17 0.00
870 31 0.01
871 75 0.02
872 2 0.00
874 1 0.00
876 1 0.00
877 1 0.00
879 1 0.00
880 1 0.00
881 162 0.04
882 217 0.05
883 313 0.07
884 73 0.02
885 74 0.02
886 4 0.00
888 1 0.00
889 2 0.00
890 1 0.00
891 3 0.00
892 1 0.00
893 22 0.01
894 230 0.05
895 391 0.09
896 580 0.14
897 608 0.14
898 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
ATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATTGGATCAGGACTGAGGGTTGCAGCAGCAAGATCGGCAGCAC
GCAGGGGGGACCCGACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGACCGGCTGAACGCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGAGTTCATTC
CCAGTGTAAGATGGACCGGATCAAGGGTTACAGGTGCACATGCTGGGCTCGAGCATGTGCTGGTG
CCGTATTTTTTTTCGCCCGGGCACCATCTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
GTTCCGGCGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGT
CACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAACCG
TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
Found at i:2619628 original size:26 final size:26
Alignment explanation
Indices: 2619576--2619628 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2619566 GTTGACTTAG
*
2619576 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
2619602 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2619628 G
1 G
2619629 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2620759 original size:14 final size:14
Alignment explanation
Indices: 2620740--2620778 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
2620730 ATATTATATA
2620740 AAATACAAAAAAAT
1 AAATACAAAAAAAT
*
2620754 AAATACCAAAAAAT
1 AAATACAAAAAAAT
2620768 -AATACAAAAAA
1 AAATACAAAAAA
2620779 TTAGCAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:2622195 original size:17 final size:17
Alignment explanation
Indices: 2622175--2622218 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
2622165 AAAACCCTTA
2622175 AAAATCCAAAATCC-CCT
1 AAAATCCAAAA-CCTCCT
* *
2622192 AAAATTCAAAACCTCTT
1 AAAATCCAAAACCTCCT
2622209 AAAATCCAAA
1 AAAATCCAAA
2622219 GTCCTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.20
Consensus pattern (17 bp):
AAAATCCAAAACCTCCT
Found at i:2631325 original size:894 final size:896
Alignment explanation
Indices: 2628091--2648527 Score: 26243
Period size: 895 Copynumber: 22.9 Consensus size: 896
2628081 CTTGGGCCCT
* * * * * *
2628091 GGCTGAGCACTCGCACGCCTCGTTTCGTGGGTTGAGTTAGGCTTGCGG-GTT-ATTCCTCAATCT
1 GGCTGAGCGCCCGCACG-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCT
* * * * * * * *
2628154 AAGCATAAGGAGTTCATTCCCAAAGTGT-AGATTGCACCGGACTGAGGGGTT-AGGGTGTACATA
64 AAGCATACGGAGTTCATTCCC--AGTGTAAGATCGGACCAGACCGA-GGGTTGCGGGTGCACATG
* * *
2628217 CTGGGCTCGAGCATGTGCTTGGTGCTGC-CAATTTTTTTTTTTGCCCGGGGCACCATTGCCGGAG
126 CTGGGCTCGGGCATGTGC-TGGTGC--CAC-A-TTTTTTTTTCGCCCGGGGCACCATCGCCGGAG
* * * ** *
2628281 CATCGCCGGAGAACCTGATCGACGGCATTGCGGTTCCGGTGATTGGGGGGGCAGGGGGTTGTGCG
186 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGC-GGGGGGTGTGCG
** *
2628346 CACATGA--T--G-T--GTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCAGCAAACCT
249 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
2628404 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAA
314 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
2628469 GTGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAAC-TCAAGTTTTTAGC
379 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC-ACTTCGAGTTTTTAGC
* * * * * * *
2628533 TGAATTTTTTTATGCATACCAATAAAAATACGAGGATCACCTTTGCCAAGTTTGGGGCCAAAACT
443 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
** * *
2628598 CCTTCTGAAAAAATTTTAAAAATTTCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAA
508 CCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAA
*
2628663 AACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
573 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* **
2628728 CATAAAAATGGTATTGGCATGGCAGAAATATGAAGATGTATCTAAACCCACCTACCACCCTATCG
638 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* ** * * *
2628793 ATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGTGTAGTGCCTGCCCGCCCGCTCGTTTCATCC
703 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCG
* * ** ** * * * *
2628858 TTTGGCTTAGGCATACGGAGTTCATGCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGTAGT
768 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGC
* * * * * *
2628923 AGGATCGGCAACACGTAGGGGGGGACCCAACCGATCCCCGGCTTGCGCATCCTACCCCTCTGGTC
833 AGGATCGGCAGCA-GGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
** * * * *
2628988 GGCTGAGCGCCCGCACGCTAATTTCGTGGGTTGAGTTTGGCATACGGGGTTTATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2629053 GCATATGGAGTTCATTCCCAATGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTAGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
2629118 CAT-GAGCATGTGTTGGCGCCAC-TTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGA
131 C-TCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * * * *
2629181 AGAACTTGACCAACGGCATT-TGGTTTCGGCGATTGGGGGGGCGGGGGGGTGTGTGCACATGTTG
195 AGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGC-GGGGGGTGTGCGCACATGATG
* * *
2629245 TGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTTGAGAACTC
258 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* ** * *
2629310 ACACCCCCTTAAAAAAAATTTGAGATTCTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAA
323 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
2629375 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTT
388 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* **
2629440 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTTTTCTGAAA
453 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
2629505 AAAGTTAAAAAAAATC-CTGAACCGT-AAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
518 AAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
*
2629568 TCTTGCCATGAAACTTCACATGAAGGCTTGAA-GGACTATTGTATGAATTTACAAGCCATAAAAA
582 TCTTGCCATGAAACTTCACATGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
2629632 TGGTATTGGCATGGCTGAAATATGAAGATGTGCCTAAAACCACCTAGCACCCTATCGATCCATGA
646 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * * * * * **
2629697 CTTGCGCATCCCGCCTCTCTGACCGGTGTAGTGCTCGCCTGCCTGCTCATTTCATCGACTGGCTT
711 CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * ** ** * * * *
2629762 AGGCATATGGAGTTCATTCCCAATCTAAAATTGGACTGGATCGAGGGTTATGACAGCAGGATCGA
776 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * *
2629827 TAGCACGCAGGGGGGACCCGATCGATCCCAGACTTGCGCATCCTGCCCCTCT-GCC
841 CAGCAGGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * *
2629882 TGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCTAGTCTA
1 -GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
2629947 AGCATACGGAGTTCATTCCCAGCGTAAGATCAGACCGGACCGAGGGTTGCGAGTGTACATGCTAG
65 AGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGG
* ** ** * * * **
2630012 GCTCAGGCATGCCCTGGTGCTGCATTTTTTTTTCGCTCGGGGCA-CATTGTCGGAGCATCACCGG
130 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGG
* **
2630076 AGAACTTGACCGACGGCATTACGGTTCCGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATG
195 AGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGC-GGGGGGTGTGCGCACATGATG
* **
2630141 TGCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCGTTATCCCTCATCAAACCTCGAGAACTC
258 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
2630206 ACACCACTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAA
323 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
2630271 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAGACTTCAAGTTTTTAGATGAATTTTTT
388 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
2630336 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTTCCAAGTTT-GGGCCAAAACTCCTTCTGAAA
453 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
2630400 AAATTTTAAAAAAATCTCAAATCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGT
518 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
2630465 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
583 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
2630530 GTATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCAACGGCT
648 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
2630594 TGCGCATCCCGCCTCTCTGGCCGATGTAGTGCCTGCCCGCCCACTCGTTTCGTCGTTTGACTTAG
713 TGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
2630659 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATTGGCA
778 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
* *
2630724 GCATGGAAGGGGGGACCCGACCGATCCCCGGCTTGCGTATCCTGCCCCTCTGGTC
843 GCA-GGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * * * * * * *
2630779 GACTGAGCACCCGCACGCTCGTTTCATGGGTTGAGTTAGGCATGCAGAGTTTATTCCTAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2630844 GCATATGGAGTTCATT-CCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * * * * *
2630908 CTCGGGCATGTGTTGGTGCTACATTTTTTTTTCACCCAGGGTACCGTCGCCGGAGTATTGTCGAA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * * * *
2630973 GAACCTGACCGACAGCATTGTGGTTCTGGCGATTGGGGGGTGGGGGGTGTGCGTACATGATGTGC
196 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGC
*
2631038 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
261 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2631103 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAACCACTAAAGTGTCTGAAATG
326 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
2631168 GGGACACTTTTTTCAAATGGTCACAAAATCCTATACACCTCAAGTTTTTAGCTGAATTATTTTGT
391 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
2631233 GCATGCCAACAAAAATACAAGGATCACATTTACCAAGTTTGGGACCAAAACTCCTTCTGAAAAAA
456 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
** * * *
2631298 -TAAAAAAAAATCTTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
521 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
2631362 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
586 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
2631427 TTGGCATGGCAGAAATATGAGGATGTGCCCAAACCCACCTACCACCCTATGGATCCACGGCTTGC
651 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * **
2631492 GCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCTCGTCCGCTCGTTTCATCATTTGGCTTAGGC
716 GCATCCCGCCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** * * *
2631556 ATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTTGTAGGATAGGTAGC
780 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGC
* * * * * * * *
2631621 ATGCAGGGGGGGACCCGATCAATCTCCGGCTTGTGCATCTTGCCCCTTTGGCC
845 A-GGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * * * * *
2631674 TGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTTATTCCCATTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2631739 GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCAAGGGTTGCAGGTGCACATGCTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* ** * * * *
2631804 CTTGGGCATGTGCTGGTGCCGTATTTTTTTTTCGCCCGGGACACTATCGCCGGAGTATC-ACTGG
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTC-GG
* ** *
2631868 AGAACCTGACCGACGGCTTTGGGGTTCC-A-G--T---GGTTGGGGGGTGTGCACACATGATGTG
195 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTG
* * * *
2631926 CAATGGGTGCTGGTACATGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTAG-GAACTCAC
260 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
2631990 ACGCCCTTAAAGAGCATTTCAAATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
325 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2632055 GGGGACATTTTTTTCAAATGGCCACAAAATCCTGTACACCTCGAGTTTTTAGCTGAATTTTTTTG
390 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
2632120 TGCATGGCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAA
455 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
2632185 ATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCT
520 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
2632250 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGT
585 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
2632315 ATTGGCATGGTAGAAATATAAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGACTTG
650 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
2632380 TGCATCTCACCTCTCTGGCCGACGTAATGCCCGCCCGCCCGCACGTTTCGTCGTTTGGCTTAGGC
715 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * *
2632445 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAATGGTTGCGGTAGCAGGAT-AGCAGC
780 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGC
* * * * **
2632509 ATGAATGGGGGGACCC-AGCCAATCCCCAGCTTACGCATCCTATCCCTCTGGCC
845 AGGAA-GGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * * ** * * *
2632562 GGTTGAGCACCCGAACGCTAATTTCGTGGGTTGAGTTTGGCATACGGAGTTTATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2632627 GCATATGGAGTTCATTCCCAATGTAAGATCGGACCAGACCTAGGGTTGCGAGTGCACATGTTAGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * ** * * *
2632692 CACAGGCATGTCCTGGTG-C-TGTATTTTTTTC-CCCGGGGGCACCATCCCCGGAGCATCGCCGG
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCC-GGGGCACCATCGCCGGAGCATCGTCGG
* * ** *
2632754 AGAACCTGACCGATGGTATTACGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCACACATGATGT
195 AGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGTGTGCGCACATGATGT
** * * *
2632819 G-GTATTTGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCTTCATCAAACCTTGAGAACTC
259 GCG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
2632883 ACACCCCGTTAAAAAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
323 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
2632948 ATGGGGACACTTTTTTCAAATGATCACAAACTCCTGTACACTTTGAGTTTTTAGCTGAATTTTTT
388 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
2633013 TGTGCATGCCAAAAAAAATACAAGGATCACTTCTGCCAAGTTTGGGGTCAAAACTCCTTCTAAAA
453 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * ** * *
2633078 AAATTTAAAAAAAAAAC-CAAACTATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
518 AAATTT-TAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
*
2633142 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
582 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
2633207 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACGGC
647 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*** **
2633272 TTGCGCATCCCGCCTCTCTGGCC-AGCGTAAAACCCGCATGCCCGCTCGTTTCGTCGGTTGGCTT
712 TTGCGCATCCCGCCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* *** * * * *
2633336 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTAAGGGTTGTGGTAGTACGATCGA
776 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * ** * * **
2633401 CAGTAGGCAA-GGGGGACCCGATC-ATTCCTAGGCTTGCGCATCCTGCACCTCTAGTT
841 CAGCAGG-AAGGGGGGACCCGACCGA-TCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
** * * *
2633457 GGCTGAGCGCTTGCGCGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
2633522 GCATATGGAG-T-A-T--C------AGATC-G---A-ATCGAAGGTTGCAGGTGTGCATGCTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * * * *
2633571 CTCAGGCATGTGCTGGTGCCATA-TTTTTTTTCGCCCGGGCCAACATCGTCAGAGCATCATCGAA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * * * * *
2633635 GAACCTGACCGGCGACATTGGGGTACCGGCCATTGGGGGAGGCGGAGGGGGTGTGCACACAGGAT
196 GAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGG-GGC-G-GGGGGTGTGCGCACATGAT
* * *
2633700 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATACCTCATCAAACCTCGAGAACT
257 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
2633765 CACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTA-CCATTAAAGTGTTTAA
322 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
2633829 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACTCTTCGAGTTTTTAGCTGAATTTTT
387 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
2633894 TTTTTCATGCCAACGAAAATACAAGGATTACTTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAA
452 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * *
2633959 AAAATTTTAAAAAACTCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATCGAAAACGAGTCG
517 AAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
* **
2634024 TCTTGCCATGAAACTTCACATGAAGGCTTAACGGACCATTGTACAAATTTACAAGCCATAAAAAT
582 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** * * **
2634089 GGCATTGGGATATCAAAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAAC
647 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
2634154 TTGCACATCCCGCCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGTCCTA
712 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** * * *
2634219 GGCATTCATAGTTCATTCCCAGTCTAAGATC-GAACCAGACTGAGGATTGTGGCAGCAAGATCGG
777 GGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * * *
2634283 TAGCATGCAGGGGGCGACCCGGCCGATCCCCAGCTTGTGCATCCTGCACCTCTGGCC
841 CAGCAGGAAGGGGG-GACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * *
2634340 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** ** * * *
2634405 GCATACGGAGTTCATTCTCAGTGTAACATCAAACTGGACCAAGGGTTGTGGGTGCACATGCTAGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* **
2634470 CTCGAGCATGTGCTGGTGCCACA-TTTTTTTTCGCTTGGGGCACCAT--------CA-C--CGGA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * *
2634523 GAACCTGACCGACGACATTGGGGTTCTGGCGATTGGGGTGAGCGGGGGGGGGTGTGTGCACATGA
196 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGG-G-GC---GGGGGGTGTGCGCACATGA
* * * * *
2634588 TGTGCGGTTGGTGCTTGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
256 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
2634653 TCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
321 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
2634718 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
386 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
2634783 TTTGTGCATGCCAA-AAAAATTACAAGGATGATGTCTACCAAGTTTGCGGCCAAAACTCCTTCTG
451 TTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
*
2634847 AAAAAA-TTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
515 AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
2634911 CGTC-TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
580 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
2634975 ATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCAATCAACT
645 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
2635038 GCTTGCGCATCCCACCTCTCTAGCCGACGTAGTGCCCGCGCCG-CCGCCCGTTTCATCGGTTGGC
710 GCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGC-CCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * * * *
2635102 TTTGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCTAGGGTTATGACATCAAGATT
774 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC
* * * * *
2635167 GGCAGCAAGCAGGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCTGCCCCTCTAGCC
839 GGCAGCAGGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
*** * * *
2635225 AATTGAGCGCCCGCACGCTCATTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2635290 GCATACGGAGTTCATTCCCAGGGTAAGATCGGACCGGACCGAGGGTTGCGAGTGCATATGCTGGC
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
** ** *
2635355 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTTCGCCCAAGGCACCATCGTCGGAGCATCGTCGGA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
** * * *
2635420 GAACCTGACCGGA-GGCATTATGGTTCAG-CGATTGGAGGGCGGGGGGTTGCGGTTTGCACACAT
196 GAACCTGACC-GACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGG-T---G--TGCGCACAT
* *
2635483 GATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGACA
254 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
2635548 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
319 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
2635613 TGAAATGGGGACAATTTTTTCAAACGGTCACAAAATCATGTACACTTCAAGTTTTTAGCTGAATT
384 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* * * * *
2635678 GTTTTGTGCATGCCAACAAAAATACAACGATTACGTCTACCAAGTTTGGGGCCAAAATTCAC-TA
449 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTC
* * *
2635742 TGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAA-TTTCAAAAATCTTGAAAAATAGAAAATGA
513 TGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* * ** * *
2635806 GTTGTCTTGTCATGAAACTTCACATGAAGGCTTAATAGAGCAATGTATGAATTTACAAGCCATAA
578 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
2635871 AAATGGCAGTGGCATGGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCAATCCA
643 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
2635936 CGGCTTGCACATCCCGCCTCTCTGGCCGACGTAGTGCCCGTCCGTCCGCCCGTTTCATCGATTGG
708 CGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
2636001 CTTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACCGATGGTTGCGGCAGCAGG
773 C-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGTGGCAGCAGG
* * * * ** *
2636064 ATCAGCAGCATGCAGGGGGGACCCGACTGATCCCTAGCTTGCGCATCTTGCCCCTCTGGCC
836 ATCGGCAGCAGGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * * * *
2636125 GGCTGTGCACCCGCACGATCGTTTCGTGAGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
2636190 GCATACGGAGTTCATTCTCAGTGTAAGATCAGACCAGACCGAGGGTTATGGGTGCACATGCTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
2636255 CTCGGGCATGTGCTGGTGCAACA-TTTTTTTTCGCCCGGGGGACCATCGCCGGGGCATCGCCAGA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * *
2636319 GAACCTGACCGACGGCATTGGGTTTTCGATGATTGGGGGGCAGGGGGGGTGTGCACACATGATGT
196 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGC--GGGGGGTGTGCGCACATGATGT
* * * *
2636384 GCGATGGGTGCTTGTATTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAATCTCGAGAACTCA
259 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2636449 CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
324 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2636514 TGGGGACAC-TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
389 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
2636578 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTT-GGGCCAAAACTCCTTCTGAAA
454 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCCAAAACTCCTTCTGAAA
* *
2636642 AAA-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
518 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
2636706 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
583 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
2636771 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
648 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
2636836 TGCGCATCCCGCCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
713 TGCGCATCCCGCCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* *
2636900 GGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACC-GAACCGAGGGTTGGGGCAGCAGGATCA
777 GGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACCGAGGGTTGTGGCAGCAGGATCG
* * * * * * * *
2636963 GCAGCAAGCACGGAGGACCCGACCAATCCCTGACTTGCGCATCCTGCCCCTCTGGTC
840 GCAGCAGGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* *
2637020 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT-GGCATACAGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2637084 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCAAGGGTTGCAGGTGCACATGCTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * **
2637149 CTCGAGCATGTGCTGGTGCCACA-TTTTTTTTCGCTCGGGGCACCATCGCCGGAGCATCATCATA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
2637213 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTG
196 GAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGTGTGCGCACATGATGTG
** *
2637278 CGATGGGTGCTGGTACTTGGGACTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAATTCAC
260 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2637342 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
325 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2637407 GGGGACACTTTTATCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
390 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2637472 TGCATGCCGAA-AAAAATACGAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCGTTCTGAAAA
455 TGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
** * * * * *
2637536 AATTAAAAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATC
519 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
2637601 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTCTCAATTTACAAGCCATAAAAATGG
584 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* **
2637666 CATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTGCGGCTT
649 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
2637731 GCGCATCTCGCCTCTCTAGCC-AGCGCAGTGCCTC-CCCGCCCGCTCGTTTCGTCGATTAGCTTA
714 GCGCATCCCGCCTCTCTGGCCGA-CGTAGTGCC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * ** * * * * **
2637794 TGCATACAGAGCTCATTGCCAGTCCAAGATTGGACCAGAACGAGGCTTGTGGTAGCAGGTTCAAC
777 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * *
2637859 AGCACGCAA-AGAGGACCCGACAGAACCCCGGCTTGCGCATCCTGCCCCTCTGGCC
842 AGCA-GGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * * * **
2637914 GGCGGAGCACCCGCACGTTCGTTTCGTGGGTTGACTTGGGCATATAGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2637979 GCATACAGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGGTCCACATGTTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
** * * * *
2638044 CTTC-GGCATGTGCTGGTGCCGTATTTTTTTTTTGCTCGGGGCACCATCGCCGGAGCATCATCGT
131 C-TCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGG
* *
2638108 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGAGGCAAGGGGGTGTACGCACATGATG
195 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGG-GGC-GGGGGGTGTGCGCACATGATG
2638173 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
258 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
2638238 ACACCCCCTTAAAGAGCGA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
323 ACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
2638302 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATAGAGTTCGAGTTTTTAGATG-ATTTTT
387 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
2638366 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTAGGGCCAAAACTTCTTTTGAA
452 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * ** *
2638431 AAAATTTTAAAAAAATCTCAAACCGTCAAAAGTTTCGAAAATCATGAAAAAATAGAAAACGAGTC
517 AAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTG-AAAAATAGAAAACGAGTC
* *
2638496 GTCTTGCCAAGAAACTTCACATGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAA
581 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
2638561 TGCCAATGGCAT-GCTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
646 TGGCATTGGCATGGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * **
2638625 GCTTGCGCATCCC-CTCTCTCTGGCCGGCGTGGTGCCTGCCCGCCCGCTCGTTTTC-TTTGTTGG
710 GCTTGCGCATCCCGC-CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCG-TTTCGTCGGTTGG
* * * *
2638688 CCTAGGCATACGGATGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGCCAGCAGGA
773 CTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGA
* * ** * *
2638753 TCGGCAGCACGCACAGGGGACCC-AGCTGATCCCTGGCTTGCGCATCCTGCCCCTC-GGCC
837 TCGGCAGCAGGAAGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * * *
2638812 TGCTGAGCGCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** **
2638877 GCATATGGAGTTCATTCCCAGTGTAGGATCAAACCAGACCGAGGGTTGCGACTGCACATGCTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
2638942 CTCGGGCATGTGCTTGTACCACA--TTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * *
2639005 GAACCTGACCGGCGGCATTAGGGTTCCGACGATTGGGGGGGGGGGGGTGTGCGCACATGATGTGC
196 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGC
*
2639070 CATGGGTGCTGGTACTTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
261 GATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2639135 AGCCCCTTAATGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
325 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
2639199 GGGGACAC-TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-
390 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
2639262 TGCATGCCAAAAAAAATAC-AGGATCACGTCTACCAAGTTTAGGGGCCAAAACTCCTTCTGAAAA
455 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCTGAAAA
*
2639326 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTT-AAAATCTGTGAAAAATAGAAAATGAGTCGT
519 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATC-GTGAAAAATAGAAAACGAGTCGT
*
2639390 CTTGCCATGAAACTTCACATGAAGGCTT-AGAGGACCATTGTATGAATTTAGAAGCCATAAAAAT
583 CTTGCCATGAAACTTCACATGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAAT
**
2639454 GGCATTGGCATGATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
647 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * * *
2639519 TTGTGCATCCCACTTTTTTGGCCGACGTAGTGCCCGCCCGCTCGCTCATTTTGTCGGTT-GTTAT
712 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT-T
* ** ** * *
2639583 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATGGAGGGTTGCAGTAGCAAGATCGG
776 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * **
2639648 TAGCATGCAGGGGGGGACCCGATCGATCCACGGCTTATGCATCCTGCCCCTCTGGCC
841 CAGCA-GGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * *
2639705 GGCTGAGCGCCTGCACGCTCGTTTCTTGGGTTG----A-G-TTA--G-G--------CA---T-A
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
2639749 -CA-A---AGTTCATTCCTAGTGTAAGATCGGATCAGACCGAGGGTTATGGGTGCACATGCTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
** * * ** *
2639809 CTTAGGCATGTGTTGGTGCCACA-TTTTTTTTCGCCCGGGGCACCATCACCGGAGCATCACCAGA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* ** * *
2639873 GAACCTGACCGATGGCATTCAGGTTCCGACGATTGGGGGGGCGGGGGGTGTGAGCGCATGATGTG
196 GAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGTGTGCGCACATGATGTG
* * * * *
2639938 CAATGGGTGCTGGTGCATGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTAGAGAACTCAC
260 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
2640003 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
325 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
2640068 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
390 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
2640133 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
455 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
*
2640198 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
520 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
2640263 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
585 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
2640328 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
650 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
2640393 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
715 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
2640458 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCGGTAGC
780 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGC
* * * * * *
2640523 ACGCAGGAGGGACCCGACCGATCCCCGGCTTGAGCATCTTGCCCCTCTGGCT
845 AGGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
** ** * * * *
2640575 GGCTGAATGATCGCACGCTCATTTCATGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCAAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2640640 ACA-AAGGAAGTTCATTCCCAGTGTAAGATTGGA-CTGCACCGGGGGTTGTGGGTGCACATGCTG
66 GCATACGG-AGTTCATTCCCAGTGTAAGATCGGACCAG-ACCGAGGGTTGCGGGTGCACATGCTG
* ** * * *
2640703 GGCTCGGGCATTTGCTGGT-CC-TGTATTTTTTTCGCCTGGGGAACCATCGCCGGAGCATCGTCA
129 GGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTC-
** * * *
2640766 AAAGAAGCTGACGCGATGGCATTGGGGTTCCGATGATTGGGGGGGCGGGGGGGTGTGCGCACATG
193 GGAGAACCTGAC-CGACGGCATTGGGGTTCCGACGATT-GGGGGGC-GGGGGGTGTGCGCACATG
* *
2640831 ACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
255 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
2640896 CCCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
320 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
2640960 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
385 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
2641025 TTTTATGCATGTCGAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT
450 TTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * * * * * * * *
2641089 GATATAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAATGAT
514 GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
* *
2641154 TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAA
579 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
2641219 AATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCAT
644 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
2641284 GGCTTGCGCATCCCGCATCTCTGGCTGACGTAGTGCCCACCCACCCGCTCATTTCATCAGTTGGC
709 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** * * ** * **
2641349 TTAGGCATACAGAGTTCATTCCTGGTCTAAGATTAGACTAGATGGAAGGTTGCAGCAGCAGGATC
774 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC
* * * ** *
2641414 AGCAGCACGCAGGGGGGACCCGACCGATCCCCGGCTTATGCATCCTGCCCCTCTGGTC
839 GGCAGCAGGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* *
2641472 GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCA-T-----TC---
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
2641528 G--T----AG-----T---A---TAAGATCGGACCAGACCGAGGGTTGCGGGTGTGCAAGTTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
2641576 GTCGGGCATGTGCTGGTGCCACA-TTTTTTTTCACCCGGGGCACCATAGCCGTAGCATCGTCGGA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * * * *
2641640 GAACCTGACCGGCGGCATTGGGGTTCCAATGACTGGGGGGCGGGGGGTGTGTGCACATGATGTGT
196 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGC
* * * *
2641705 GATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCATA
261 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2641770 CCCACTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATG
326 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2641835 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGT
391 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
2641900 GCATGCCAACAAAAATATAAGGATCACGTCTACCAATTTTGGGGCCAAAAATCCTTCTGAAAAAA
456 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * * ** * *
2641965 TGTTAAAAAAATCTCAAACTGTAACAAGTTTCGAAAATCATGAAAAATAGCAAACGAGTCGTCTT
521 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
2642030 GCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCT
586 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
2642095 TTGGCACAAG-AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
651 TTGGCA-TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** * *
2642159 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCATTCATTTCGTTGGTTGGCTTAGGC
715 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
2642224 ACACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATTGGCAGC
780 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGC
* * * * *
2642289 A-CATAGGGGGGACTCGATCGATCCCCAGCTTGCACATCCTG-CCCTCTGGCC
845 AGGA-AGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * ** * *
2642340 GGTTGGGCGTTCGCACGCTCGTTTCGTGAGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
2642405 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATGTAAGATCAGACCAGAC
66 GCATACGGAGTTCATTCCCAG--T--G--T--A-AG---A-T--C-------G----GACCAGAC
* * * *
2642470 CGAGGGTTGCAGGTGCACATGCTAGGCTCAGGCATGTGCTGGTGCCAGA--TTTTTTTCG-CCGG
105 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGG
* * *
2642532 GGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGG
170 GGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGG
2642597 GCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
235 GCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
2642662 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
300 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
2642727 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
365 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
2642792 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTT
430 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
*
2642856 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT-GAACCGTAAAAAGTTTTCAAAATC
495 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATC
2642920 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
560 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* *
2642985 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCGCCTAATCCCACC
625 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * ** *
2643050 TACCACCCTATCGATCCATGGCTTGTGCATCCCGCCTCTCTGGTCGGCGTAGTGCTTGCCCCCCC
690 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG-CCCGCC
* * * * * *
2643115 CGCTCGTTTTGTTGGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCTAGGATCGGA-CAGATCG
754 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * ** * *
2643179 AGGGTTGTGACAGCAAGATTAGG-AGCACACAAGGGGGGACCCGACCGATCCGCAGCTTGCGCAT
819 AGGGTTGTGGCAGCAGGA-TCGGCAGCA-GGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCAT
*
2643243 CCTACCCCTCTGGCC
882 CCTGCCCCTCTGGCC
* * * * *
2643258 GGTTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2643323 GCATACGGAGTTCTTTCCCAGTGTAAGATCGAACCAGACCGAGGGTTCCAGGTGCACATACTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * ** * *
2643388 CTCGAGCATATGCTGGTGCCGTATTTTTTTTTCACCCGTTTGGG--GCA----C--A--ATCGTC
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCG---GGGCACCATCGCCGGAGCATCGTC
** *
2643443 GGAGAACCTGACCGGTGGCATTGGGGTTCC-AGTGATTGGGGGGCGGGGGGATGTGCGCACATGA
193 GGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATTGGGGGGCGGGGGG-TGTGCGCACATGA
* * *
2643507 TGTGTGATGGGTGCTGGTACGTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAAC
256 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
** *
2643572 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGAAGTAGCAATTAAAGTGTCTG
321 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
2643637 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
386 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
2643702 TTTGTGCATGCCAAAAAAAATACAAGGATTATGTCTACCAAGTTTGGGGCCAAAAATCCCTCTGA
451 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * * * * *
2643767 AAAAATTTTAAAAAAGTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTC
516 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* *
2643832 ATCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
581 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
2643897 TGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
646 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
2643962 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTT
711 CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* **** * * * *
2644027 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGTTTGGACCAAGGGTTGTAGCAGTAGGATCGA
776 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * * * * *
2644092 TAGCATGCAGGGGGGA-GCTAGCCGATCCCTGGCTTGCACATCCTG-CCCTTTCGGTC
841 CAGCAGGAAGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCT-GGCC
* * *
2644148 GGCTTAGCGCCCGCACGCTCATTTGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2644213 GCATACAGAGTTCATTCCC-GTTGTAAGATCAGACCAGACCAAGGGTTGTGGGTGTACATGCTGG
66 GCATACGGAGTTCATTCCCAG-TGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGG
* * * **
2644277 GCTCGGGCATGTGCT-GTGCCACA-TTTTTTTTCACCCGAGGCACCATCACCGGAGCATCACCGG
130 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * * *
2644340 AGAACCTGACCGACGGCATTGGGGTTTCGGCGATTAGGGGG-TGGGGGTGTGTGCACATGTTGTG
195 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTG
* * *
2644404 CGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAAGCTCAAGAACTCAC
260 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * * * *
2644469 AGTCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCTAATAGCTATTAAAGTGTCTGAAAT
325 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
2644534 GGGGACACGCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
390 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2644599 TGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAA
455 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
*
2644664 AGTTTT-AAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
520 A-TTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
2644728 TTGCCAT-ATAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATT
584 TTGCCATGA-AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *** * *
2644792 GCATTGGCATAGCA-AAATATGTAGATGTGCCTAAACCCACCTGTTACCCTATCGATCTACAGCT
648 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * *
2644856 TGCGCATCCCGCCTCTCTGGCCGGTGTAGTGACCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAG
713 TGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * ** * **
2644921 GCGA-ATGGAGTTCATTCCTAATCTGAGATCAGCCCGGACCGAGGGTTGCAGCAGTAGGATCGAT
778 GC-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * ** * * *
2644985 AGCACGTAGGGGGGACCC-AGCTGATCGTCGGCTTGTGCATCCTACCCCTTTGGCC
842 AGCAGGAAGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * * * *
2645040 TGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2645105 GCATACGGAGTTTATCCCCAGTGTAAGATCGGACCAGACCGGGGGTTGTGGGTGCACATGCTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * ** **
2645170 CTCAGGCATGTGCTGGTGCCACATTTTTTTATT-GCCCAGGGCACCATCATCGGAGCATCACCGG
131 CTCGGGCATGTGCTGGTGCCACATTTTTTT-TTCGCCCGGGGCACCATCGCCGGAGCATCGTCGG
* * * *
2645234 AGAACCGGATCGACGGCATTAGGGTTCCGACGATT-GGGGGCGGGGGG-GTGCGCACATAATGTG
195 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTG
* *
2645297 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-ATCCCTCATCAAACCTCTAGAACTCAC
260 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2645361 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
325 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2645426 GGGGACATTTTTTTCAAAT-GTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
390 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
2645490 TGCATGCCAAAAAAAAATACAAGGATCACGTCCACAAAGTTTGGGACCAAAACTCCTTCTGAAAA
455 TGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * ** *
2645555 AAGTTTT-AAAAAATCTCGAACCTTGAAAAGTTCCAAAAAT-GATGAAAAA-A-AAAATGAGTCG
519 AA-TTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCG-TGAAAAATAGAAAACGAGTCG
*
2645616 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAAT
582 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
2645681 GGAATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCCGGC
647 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
2645746 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCTTGTTTCGTCAGTTGGCTTA
712 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** * * * *
2645811 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTAGTAGCAGGATCGGT
777 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * * * *
2645876 AGCACGCAGGGGGGAGCCGGCCGATCCCTGGTTTGCACATTCTGCCCCTCCGGCC
842 AGCAGGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
*
2645931 GGCTGAGCGCCCGCACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2645996 GCATACGGAGTTCATTCCCATTGTAAGATCAGACCAGACCGAGGGTTGCGGTTACACATGCTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
2646061 CTCGAGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGAGGCACCATCGTCGGAGCATC-ACCGA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
*
2646124 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGAGGGGGTGGGGGGTGTGCGCACATGATGTG
196 GAACCTGACCGACGGCATTGGGGTTCCGACGATTG-GGGGGCGGGGGGTGTGCGCACATGATGTG
* *
2646189 CGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
260 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * *
2646254 AGTCCCTTAATGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
325 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
2646319 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
390 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
2646384 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAA
455 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
2646448 AGTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
520 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
2646513 TGCCAT-ATAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
585 TGCCATGA-AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * **
2646577 CATTGGCATAGCA-AAATATGCAGATGTGCCTAAACCCACCTATTACCCTATCGATCCACGGCTT
649 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
2646641 GTGCATCTCGTCTCTCTAGCCGGCGTAGCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGG
714 GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ***** * *
2646706 CAAACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTACAATAGTAGGATCGACAG
779 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAG
* * * * * *
2646770 CACGTAGGGGGGGACCCAACCGATCCCCGGCTTGTGCATCTTGCCCCTTTGGCC
844 CA-GGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
*
2646824 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
2646889 GCATACGGAGTTCATTCCCAGTGTAAGATTGGACCAGACCGAGGGTTGTGGGTGCACATGCTGGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * ** * *
2646954 CTCAGGCATGTGTTGGTGCCGCA-TTTTTTTTCGCCCAGGGCACCATCATCGGAGTATCGTCGAA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* ** *
2647018 GAACCTGACCGACGGCATTAGGGTTCTAACGATTGGGGGGCGAGGGGTGTGCGCACATGATGTGC
196 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGC
* *
2647083 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-ATCCCTCATCAAACCTCTAGAACTCACA
261 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
2647147 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
326 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2647211 GGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
391 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
2647276 GCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAA
456 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * * *
2647341 GTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG-AAAA-A-AAAATGAGTCGTCTT
521 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
2647403 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
586 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
2647468 TTGGCATAGCAAAAATATGCAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
651 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
2647533 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
716 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * ** * *
2647598 TACGGAGTTCATTCCCAGTCTGAGATC-GAACCAGACTGAGGGTTGCT-GTAGTGGGATTGACAG
781 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTG-TGGCAGCAGGATCGGCAG
* * * * * *
2647661 TACGTAGGGGGAACCC-AGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
844 CAGGAAGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* *
2647714 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
2647779 GCATACGGGGTTCATTCCTAGTGTAAGATCGGATCGGACCGAGGGTTGTAGGTGCACATGCTAGG
66 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
2647844 CTCAGGCACGTGCTGGTGCCACA-TTTTTTTTCGCTCAGGGCACCAT---C---G--T--T-GGA
131 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * *
2647897 GAACCTGACCGGCGGCATTGGGGTTCTGGCGATTGGGGGGGCGAGGGGGTGTGCGCACATGATGT
196 GAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCG-GGGGGTGTGCGCACATGATGT
**
2647962 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTAAGAACTCA
259 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2648026 AACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
324 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2648091 TGGGG-CACTTTTTTCAAATAGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
389 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
2648155 GTGCATCCCAACATAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCTGAAAA
454 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * *
2648220 AATTTTAAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGT
519 AATTTT-AAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
2648285 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCAAAAAAATG
583 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
2648350 GCATTGGCATGTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
648 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
2648415 TGCGCATCCCGCCTCTCTGGCCGGACGTAGTGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTA
713 TGCGCATCCCGCCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
2648480 GGCATACGGAGTTCATTCCCAATTTAAGATCAGACCTGATCGAGGGTT
777 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
2648528 ACGATAGCAA
Statistics
Matches: 17182, Mismatches: 2012, Indels: 703
0.86 0.10 0.04
Matches are distributed among these distances:
867 66 0.00
868 267 0.02
869 585 0.03
870 144 0.01
871 392 0.02
872 68 0.00
873 1 0.00
874 3 0.00
875 1 0.00
876 4 0.00
877 2 0.00
878 1 0.00
879 69 0.00
880 73 0.00
881 213 0.01
882 519 0.03
883 222 0.01
884 11 0.00
885 333 0.02
886 279 0.02
887 54 0.00
888 528 0.03
889 892 0.05
890 888 0.05
891 912 0.05
892 1216 0.07
893 1258 0.07
894 1400 0.08
895 2009 0.12
896 1405 0.08
897 1345 0.08
898 658 0.04
899 237 0.01
900 307 0.02
901 3 0.00
902 7 0.00
903 3 0.00
905 1 0.00
906 2 0.00
907 1 0.00
909 3 0.00
910 1 0.00
912 1 0.00
914 1 0.00
915 1 0.00
916 215 0.01
917 156 0.01
918 369 0.02
919 8 0.00
920 48 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGA
GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
TTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA
GGAAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
Found at i:2631765 original size:26 final size:26
Alignment explanation
Indices: 2631713--2631765 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2631703 GTTGAGTTAG
* *
2631713 GCATACGGAGTTTATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2631739 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2631765 G
1 G
2631766 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2632653 original size:26 final size:26
Alignment explanation
Indices: 2632601--2632653 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2632591 GTTGAGTTTG
* *
2632601 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
2632627 GCATATGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2632653 G
1 G
2632654 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2635316 original size:26 final size:26
Alignment explanation
Indices: 2635264--2635316 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2635254 GTTGACTTAG
*
2635264 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
*
2635290 GCATACGGAGTTCATTCCCAGGGTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
2635316 G
1 G
2635317 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:2636200 original size:26 final size:26
Alignment explanation
Indices: 2636164--2636216 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2636154 GTTCACTTAG
2636164 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2636190 GCATACGGAGTTCATTCTCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2636216 G
1 G
2636217 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2637094 original size:26 final size:26
Alignment explanation
Indices: 2637058--2637110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2637048 GGTTGACTTG
2637058 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2637084 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2637110 G
1 G
2637111 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2637989 original size:26 final size:26
Alignment explanation
Indices: 2637953--2638005 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2637943 GTTGACTTGG
*
2637953 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2637979 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2638005 G
1 G
2638006 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2642457 original size:26 final size:26
Alignment explanation
Indices: 2642379--2642450 Score: 135
Period size: 26 Copynumber: 2.8 Consensus size: 26
2642369 GTTGATTTAG
2642379 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2642405 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2642431 GCATACAGAGTTCATTCCCA
1 GCATACGGAGTTCATTCCCA
2642451 ATGTAAGATC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2645115 original size:26 final size:26
Alignment explanation
Indices: 2645079--2645131 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2645069 GTTGACTTAG
*
2645079 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
2645105 GCATACGGAGTTTATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2645131 G
1 G
2645132 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2645379 original size:892 final size:894
Alignment explanation
Indices: 2641508--2648527 Score: 9621
Period size: 893 Copynumber: 7.9 Consensus size: 894
2641498 TGGGTTGACT
** * ** * *
2641508 TAAGCATACGGAGTTCATTCGTAGTATAAGATCGGACCAGACCGAGGGTTGCGGGTGTGCAAGTT
1 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCT
* * * * * * **
2641573 GGGGTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCCGGGGCACCAT-AGCCGTAGCATCGTC
66 GGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTCGCCCAGGGCACCATCA-TCGGAGCATCACC
* * * * *
2641637 GGAGAACCTGACCGGCGGCATTGGGGTTCCAATGACTGGGGGGCGGGGGGTGTGTGCACATGATG
130 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATG
* * *
2641702 TGTGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTTATCAAACCT-TGAGAACT
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACT
* * * *
2641766 CATACCCACTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
2641831 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
2641896 TTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAATTTTGGGGCCAAAAATCCTTCTGAA
389 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * * * * *
2641961 AAAATGTTAAAAAAATCTCAAACTGTAACAAGTTTCGAAAATCATGAAAAATAGCAAACGAGTCG
454 AAAAT-TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
2642026 TCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATTAAAAT
518 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
2642091 GGCTTTGGCACAAG-AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
583 GGCATTGGCA-TAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * *
2642155 CTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCATTCATTTCGTTGGTTGGCTT
647 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * * *
2642220 AGGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATTGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGATCGA
* * * * * * *
2642285 CAGCACATAGGGGGGACTC-GATCGATCCCCAGCTTGCACATCCTG-CCCTCTGGCCGGTTGGGC
777 CAGCACGTAGGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
** * * *
2642348 GTTCGCACGCTCGTTTCGTGAGTTGATTTAGGCATACGGAGTTCATTCCCAGTC
841 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
2642402 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATGTAAGATCAGACCA
1 TAAGCATACGGAGTTCATTCCCAG--T--G--T--A-AG---A-T--C-------G----GACCA
* * *
2642467 GACCGAGGGTTGCAGGTGCACATGCTAGGCTCAGGCATGTGCTGGTGCCAGA-TTTTTTTCG-CC
40 GACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTCGCCC
* ** * * *
2642530 GGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGG
105 AGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGG
2642595 GGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
170 GGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2642660 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
235 ATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
2642725 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
300 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
2642790 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAG
365 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
2642854 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT-GAACCGTAAAAAGTTTTC-AAA
430 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAATCTCGAACCGTAAAAAG-TTTCAAAA
*
2642917 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
493 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* * *
2642982 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCGCCTAATCCC
558 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCC
* * * **
2643047 ACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGCCTCTCTGGTCGGCGTAGTGCTTGCCCC
623 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCC
* * * * * *
2643112 CCCCGCTCGTTTTGTTGGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCTAGGATCGGA-CAGA
687 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * *
2643176 TCGAGGGTTGTGACAGCAAGATTAGGA--G-CA-CAC-AAGGGGGGACCC-GACCGATCCGCAGC
752 CCGAGGG-T-TG-CAGC-AG--TAGGATCGACAGCACGTAGGGGGGACCCAG-CCGATCCCCGGC
* * * ** *
2643235 TTGCGCATCCTACCCCTCTGGCCGGTTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCA
810 TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
*
2643300 TACGGAGTTCATTCCCAATC
875 TACGGAGTTCATTCCCAGTC
* * * * *
2643320 TAAGCATACGGAGTTCTTTCCCAGTGTAAGATCGAACCAGACCGAGGGTTCCAGGTGCACATACT
1 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCT
* ** * *
2643385 GGGCTC-GAGCATATGCTGGTGCCGTATTTTTTTTTCACCCGTTTGGGGCA-CA--ATC---G--
66 GGGCTCAG-GCATGTGCTGGTGCCACA-TTTTTTTTCGCCC----AGGGCACCATCATCGGAGCA
** *
2643441 T---CGGAGAACCTGACCGGTGGCATTGGGGTTCC-AGTGATTGGGGGGCGGGGGGATGTGCGCA
125 TCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATTGGGGGGCGGGGGG-TGTGCGCA
* * * *
2643502 CATGATGTGTGATGGGTGCTGGTACGTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCG
188 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT
** *
2643567 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGAAGTAGCAATTAAAGT
253 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
2643632 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
318 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
* * * *
2643697 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATTATGTCTACCAAGTTTGGGGCCAAAAATCCC
383 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * *
2643762 TCTGAAAAAATTTTAAAAAAGTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAT
448 TCTGAAAAAATTTTAAAAAA-TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
2643827 GAGTCATCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
512 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
2643892 AAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
577 AAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
*
2643957 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTT
642 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* **** * *
2644022 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGTTTGGACCAAGGGTTGTAGCAGTAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGG
* * * * * * * * *
2644087 ATCGATAGCATGCAGGGGGGAGCTAGCCGATCCCTGGCTTGCACATCCTG-CCCTTTCGGTCGGC
772 ATCGACAGCACGTAGGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCT-GGCCGGC
* *
2644151 TTAGCGCCCGCACGCTCATTTGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
836 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
2644210 TAAGCATACAGAGTTCATTCCC-GTTGTAAGATCAGACCAGACCAAGGGTTGTGGGTGTACATGC
1 TAAGCATACGGAGTTCATTCCCAG-TGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGC
* * *
2644274 TGGGCTCGGGCATGTGCT-GTGCCACATTTTTTTTCACCC-GAGGCACCATCACCGGAGCATCAC
65 TGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTCGCCCAG-GGCACCATCATCGGAGCATCAC
* * * * * *
2644337 CGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATTAGGGGG-TGGGGGTGTGTGCACATGTT
129 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGAT
* * *
2644401 GTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAAGCTCAAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACT
** * * * *
2644466 CACAGTCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCTAATAGCTATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** *
2644531 AATGGGGACACGCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
2644596 TTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAA
389 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
*
2644661 AAAAGTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
454 AAAA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
2644726 TCTTGCCAT-ATAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
518 TCTTGCCATGA-AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *** * *
2644790 TTGCATTGGCATAGCA-AAATATGTAGATGTGCCTAAACCCACCTGTTACCCTATCGATCTACAG
582 TGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
2644854 CTTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGACCGCCCGTCCGCTCGTTTCGTCGGTTGGCTT
647 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
2644919 AGGCGA-ATGGAGTTCATTCCTAATCTGAGATCAGCCCGGACCGAGGGTTGCAGCAGTAGGATCG
712 AGGC-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGATCG
* * ** * * * * *
2644983 ATAGCACGTAGGGGGGACCCAGCTGATCGTCGGCTTGTGCATCCTACCCCTTTGGCCTGCTAAGC
776 ACAGCACGTAGGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* *
2645048 ACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
841 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
2645102 TAAGCATACGGAGTTTATCCCCAGTGTAAGATCGGACCAGACCGGGGGTTGTGGGTGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCT
*
2645167 GGGCTCAGGCATGTGCTGGTGCCACATTTTTTTATTGCCCAGGGCACCATCATCGGAGCATCACC
66 GGGCTCAGGCATGTGCTGGTGCCACATTTTTTT-TCGCCCAGGGCACCATCATCGGAGCATCACC
* * * *
2645232 GGAGAACCGGATCGACGGCATTAGGGTTCCGACGATT-GGGGGCGGGGGG-GTGCGCACATAATG
130 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATG
*
2645295 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-ATCCCTCATCAAACCTCTAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTC
*
2645359 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
2645424 ATGGGGACATTTTTTTCAAAT-GTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
2645488 TGTGCATGCCAAAAAAAAATACAAGGATCACGTCCACAAAGTTTGGGACCAAAACTCCTTCTGAA
390 TGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * * * *
2645553 AAAAGTTTTAAAAAATCTCGAACCTTGAAAAGTTCCAAAAATGATGAAAAA-A-AAAATGAGTCG
454 AAAA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
2645616 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAAT
518 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
2645681 GGAATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCCGGC
583 GGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
2645746 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCTTGTTTCGTCAGTTGGCTTA
648 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** * * * * **
2645811 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTAGTAGCAGGATCGGT
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGATCGAC
* * * * * * * *
2645876 AGCACGCAGGGGGGAGCCGGCCGATCCCTGGTTTGCACATTCTGCCCCTCCGGCCGGCTGAGCGC
778 AGCACGTAGGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* *
2645941 CCGCACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
843 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
2645993 TAAGCATACGGAGTTCATTCCCATTGTAAGATCAGACCAGACCGAGGGTTGCGGTTACACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCT
* *
2646058 GGGCTC-GAGCATGTGCTGGTGCCGCATTTTTTTTCGCCC-GAGGCACCATCGTCGGAGCATCAC
66 GGGCTCAG-GCATGTGCTGGTGCCACATTTTTTTTCGCCCAG-GGCACCATCATCGGAGCATCAC
*
2646121 C-GAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGAGGGGGTGGGGGGTGTGCGCACATGA
129 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTG-GGGGGCGGGGGGTGTGCGCACATGA
* *
2646185 TGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAC
** * *
2646250 TCACAGTCCCTTAATGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
2646315 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
*
2646380 TTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGA
388 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* *
2646444 AAAAAGTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
453 AAAAA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
2646509 GTCTTGCCAT-ATAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
517 GTCTTGCCATGA-AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* **
2646573 ATGGCATTGGCATAGCA-AAATATGCAGATGTGCCTAAACCCACCTATTACCCTATCGATCCACG
581 ATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
2646637 GCTTGTGCATCTCGTCTCTCTAGCCGGCGTAGCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
646 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * **
2646702 TAGGCAAACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTACAATAGTAGGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGATCG
* * * *
2646766 ACAGCACGTAGGGGGGGACCCAACCGATCCCCGGCTTGTGCATCTTGCCCCTTTGGCCGGCTGAG
776 ACAGCACGTA-GGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
2646831 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
840 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
2646886 TAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGACCAGACCGAGGGTTGTGGGTGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCT
* * * **
2646951 GGGCTCAGGCATGTGTTGGTGCCGCATTTTTTTTCGCCCAGGGCACCATCATCGGAGTATCGTCG
66 GGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTCGCCCAGGGCACCATCATCGGAGCATCACCG
* * ** *
2647016 AAGAACCTGACCGACGGCATTAGGGTTCTAACGATTGGGGGGCGAGGGGTGTGCGCACATGATGT
131 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGT
*
2647081 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-ATCCCTCATCAAACCTCTAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
2647145 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2647209 TGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
2647274 GTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAGTCCTTCTGAAAA
391 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
2647339 AAGTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG-AAAA-A-AAAATGAGTCGTC
456 AA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
2647401 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
520 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2647466 CATTGGCATAGCAAAAATATGCAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
585 CATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
2647531 GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
650 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
2647596 CATACGGAGTTCATTCCCAGTCTGAGATC-GAACCAGACTGAGGGTTGCTGTAGTGGGATTGACA
715 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCAGCAGTAGGATCGACA
* * * *
2647660 GTACGTAGGGGGAACCCAGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
779 GCACGTAGGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
*
2647725 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTC
844 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * **
2647776 TAAGCATACGGGGTTCATTCCTAGTGTAAGATCGGATCGGACCGAGGGTTGTAGGTGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCT
* * * *
2647841 AGGCTCAGGCACGTGCTGGTGCCACATTTTTTTTCGCTCAGGGCA-C--CATC---G--T---TG
66 GGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTCGCCCAGGGCACCATCATCGGAGCATCACCG
* * *
2647895 GAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATTGGGGGGGCGAGGGGGTGTGCGCACATGAT
131 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCG-GGGGGTGTGCGCACATGAT
2647960 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCT-TAAGAAC
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAAC
* *
2648023 TCAAACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
2648088 AAATGGGG-CACTTTTTTCAAATAGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
2648152 TTTGTGCATCCCAACATAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCTGA
388 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * * *
2648217 AAAAATTTTAAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGT
453 AAAAATTTT--AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
2648282 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCAAAAAA
516 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
2648347 ATGGCATTGGCAT-GTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
581 ATGGCATTGGCATAG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
2648411 GGCTTGCGCATCCCGCCTCTCTGGCCGGACGTAGTGCCCGCCCTCCCGCTCGTTTCGTCGGTTGG
645 GGCTTGCGCATCCCGCCTCTCTGGCCGG-CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
2648476 CTTAGGCATACGGAGTTCATTCCCAATTTAAGATCAGACCTGATCGAGGGTT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
2648528 ACGATAGCAA
Statistics
Matches: 5484, Mismatches: 521, Indels: 250
0.88 0.08 0.04
Matches are distributed among these distances:
879 32 0.01
880 16 0.00
881 194 0.04
882 102 0.02
883 5 0.00
884 7 0.00
885 166 0.03
886 79 0.01
887 10 0.00
888 64 0.01
889 359 0.07
890 709 0.13
891 784 0.14
892 875 0.16
893 947 0.17
894 279 0.05
895 40 0.01
896 3 0.00
898 2 0.00
899 6 0.00
900 1 0.00
902 1 0.00
903 3 0.00
905 1 0.00
906 2 0.00
907 1 0.00
909 3 0.00
910 1 0.00
912 1 0.00
914 1 0.00
915 1 0.00
916 198 0.04
917 156 0.03
918 368 0.07
919 12 0.00
920 51 0.01
922 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
TAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCT
GGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTCGCCCAGGGCACCATCATCGGAGCATCACCG
GAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGATCGACAGC
ACGTAGGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
Found at i:2646899 original size:26 final size:26
Alignment explanation
Indices: 2646863--2646915 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2646853 GTTGACTTAG
2646863 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2646889 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2646915 G
1 G
2646916 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2655024 original size:11 final size:11
Alignment explanation
Indices: 2655008--2655035 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
2654998 CCCGAGGCAC
2655008 CATCGCTGGAG
1 CATCGCTGGAG
2655019 CATCGCTGGAG
1 CATCGCTGGAG
2655030 CATCGC
1 CATCGC
2655036 CAGAGAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (11 bp):
CATCGCTGGAG
Found at i:2655823 original size:26 final size:26
Alignment explanation
Indices: 2655787--2655839 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2655777 GTCGACTTAG
*
2655787 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2655813 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2655839 G
1 G
2655840 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2657095 original size:890 final size:886
Alignment explanation
Indices: 2654783--2659980 Score: 6098
Period size: 890 Copynumber: 5.9 Consensus size: 886
2654773 ACAAGGTGTG
* *
2654783 ACATAGGGGGGG-CCCGGCCGATCCCCGGCTTGCACA-CCTTGCCCCTCTGGCCGGCTGAGCGCC
1 ACATAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCC-TGCCCCTCTGGCCGGCTGAGCGCC
* *
2654846 CACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGT
65 CACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGT
* * * * * *
2654911 TCATTCCCAGTGTAAGATCGGACTGGACTGAGGGTTGCGGGTGCACATGCTGGGCTTGAGAATGT
130 TCATTCCCAGTGTAAGATCGAACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTTGGGCATGT
* * * * *
2654976 GCTAGTGCCGTATTTTTTTTCGCCCGAGGCACCATCGCTGGAGCATCGCTGGAGCATCGCCAGAG
195 GCTGGTG-TGCATTTTTTTTCGCCCGGGGCACCAT--C----G---C-C---AGCATCGTCAGAG
*
2655041 AACCTGACCGGTGGCATTGGGGTTCCAGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGC
246 AACCTGACCGGCGGCATTGGGGTTCCAGCGATT------G-GGGGGGTGTGCGCACATGATGTGC
* * ** *
2655106 GATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTATCATTAAACCTCAAGAACTCACA
304 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * * * *
2655171 CCCCCTTAAAGACCATTTGAGATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTGTTTCAAAAG
369 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
2655236 GGGACACTTTTTCCAAATGGCCACAAAATCCTGTACACTTCCAGTTTTTAGTTGAATTTTTTTGT
434 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * ** * *
2655301 GCATGCCAACAAAAATACAACGATCATGCCTAGTAAGTTTGGGGCCAAAACACCCTCTGAAAAAA
499 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* *
2655366 TTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAACTAGAAAATGAGTCGTCTT
564 TTTTAAAAAAAT-CCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
2655431 GCCATGAAACTTCGCATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAAATGGC
628 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGC
* *
2655496 ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTG
692 ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** *
2655561 CGCATCACGCCTCTGTGGCCGGTGTAGTGCCTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
757 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** **
2655626 ATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTATGGCAGCAGGATCGGTAGC
822 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGC
*** * * * *
2655691 ATGCAGGGGGGGACCC-ATTCC-ATCCCCGGCTTGTGCATCTTGCCCCTCTGGTCGGCTGAGCAC
1 ACATAGGGGGGGACCCGA--CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * * *
2655754 CCGTACGTATGCTCATTTCGTCGGTCGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATAT
64 CC--AC--ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAT
* *
2655819 GGAGTTCATTCCCAGTGTAAGATC-AGACTGGACCGAGGGTTACAGGTGCACATGCTGGGCTTGG
125 GGAGTTCATTCCCAGTGTAAGATCGA-ACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTTGG
** * *
2655883 GCATGTGCTGGTGTCGCATTTTTTTTCGCTTGGGGCACCATCGCCAGTGCATCATCGGAGAACCT
189 GCATGTGCTGGTGT-GCATTTTTTTTCGCCCGGGGCACCATCGCCA--GCATCGTCAGAGAACCT
* *
2655948 GACCGACGGCATTGGGGTTCC-GACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGTAATGG
251 GACCGGCGGCATTGGGGTTCCAG-CGATT-----G-GGGGGGTGTGCGCACATGATGTGCAATGG
* * * * * *
2656012 GTGCTAGTACTTGACCCTTATATTGGCCCCCCATTCATCATCAAACCTCGAGAACTCACACCCCC
309 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* * *
2656077 GTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAATGGGGAC
374 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
2656142 AATTTTTTCAAAAT-GTCACAAAATCCTGTACACTTCGAGTTTTTGGCTGAATGTTTTTGTGCAT
439 ACTTTTTTC-AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
2656206 GCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
503 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
* * * * *
2656271 TAAAAAATACCGAACCGTAAAAAGTTTCGAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGCAA
568 AAAAAAAT-CCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
2656336 TGAAAGTTCGCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
632 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * **
2656401 CATGGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCAT
697 CATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
2656466 CCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCTGCTCGTTTCGTCGGTTGGTTTAGGCATACG
762 CCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* *
2656531 GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
827 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * *
2656591 ACATAGGGGGGGCCCCGATCGATCCCCGGCTTGCACATCTTGCCGCTCTGGCCGACTGAGCGCCC
1 ACATAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
2656656 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCCAAGCATATGGAGTT
66 ACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* *
2656721 CATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTG
131 CATTCCCAGTGTAAGATCGAACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTTGGGCATGTG
2656786 CTGGTGTAGCATATTTTCTTT-GCCCGGGGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCG
196 CTGGTGT-GCAT-TTTT-TTTCGCCCGGGGCACCATCGCC--AGCATCGTCAGAGAACCTGACCG
*
2656850 GCGGCATTGGGGTTCCAGCGATT-GGGGGGTGTGCGCACATGATGTGCAATGGGTGTTGGTACTT
256 GCGGCATTGGGGTTCCAGCGATTGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTT
* * * *
2656914 GGCCCTTACAGTGGCCCCCTATCCCTCATCAAACCTCAAGAAGTCACACCACCTTAAAGAGCATT
321 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* *
2656979 TGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACACTTATTTCAAA
386 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
2657044 TGGTCAGAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
451 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * * *
2657109 CAAGGATCATGTCTACCAAGTTTGGGGGCGAAAA-TCCTTCTAAAAAAATTTTAAAAAAATCCTA
516 CAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCC-G
* ** * * *
2657173 AACCGTAACAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTTTTGCCATAAAACTTCACA
579 AACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
2657238 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAAT
644 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAAT
** * * * *
2657303 ATGAAGACATGCCCAAACCCACCAACCACCCTATCGATCCACGGATTGTGCATCCCGCCTCTCTG
709 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * * *** * * * * * *
2657368 ACCAGCGTAGTGCCCGCCTGCGTACTCATTTTGTTGATTGGCTTAGGCAAATGGAGTTCATTCCC
774 GCCGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * ** *
2657433 AATCTAAGATCGGACCAGACTGAGGGTTGTGGCAGTGGGATC-AGCAAC
839 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGA-CAGC
* * * * * * *
2657481 ACGTAGGGGGGGACTC-AGTCGATCCCCGGCTTGCGCATCCTACCCCTCTAGCCGACTGAGCACC
1 ACATAGGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * * * ***
2657545 CACACGCTTATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACATAGT
65 CACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGT
* * *
2657610 TCA-TCCCTAGTGTAAGATC-AGACCGGATCGAAGGTTACGGGT-CTACATGCTGGGCTCGGGCA
130 TCATTCCC-AGTGTAAGATCGA-ACCGGACCGAGGGTTACGGGTGC-ACATGCTGGGCTTGGGCA
* * *
2657672 TGTGCTGGGGCCGCATTTTTTTTTCGCCCGGGG------CGCCATC-TC--CAGAGAACCTGACC
192 TGTGCTGGTG-TGCA-TTTTTTTTCGCCCGGGGCACCATCGCCAGCATCGTCAGAGAACCTGACC
* * * *
2657728 GCCGGCATTAGGGTTCC-GACGATTGGGGGGTAGGGGGTGTGCGCACATGATGTGCGATAGGTGC
255 GGCGGCATTGGGGTTCCAG-CGATT----GG--GGGGGTGTGCGCACATGATGTGCAATGGGTGC
* ** * *
2657792 TAGTACTTTTCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCAAGAACTCACACCCCTTTAA
313 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* *
2657857 AGAGCATTTGAGATTTTACAGGTTTCCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
378 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
2657922 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAACTTTTTTGTGCATGCCAA
443 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
2657987 AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
508 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * * * *
2658052 AATCCCAAACCGTCAAAAGTTTT-AAAATTGTG-AAAATACAAAACGA-TCGTCTTGGCATGAAA
573 AAT-CCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * *
2658114 CTTCGCATGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCACAAAATTGGCCTTGGCATGG
637 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * * *
2658179 TAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTACCGATCCACGGCATGCACATCCTGC
702 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* *
2658244 CTCTCTGGCCGACGTAGTGCCTACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
767 CTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
2658309 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATTGGCAGC
832 CATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGC
*** * * * * * *
2658364 ATGCAGGGGGGGACCTGACCAATCCCCGGCTTACGCTTCCTGCCCCTCTGGCCGGCTAAGCGCCT
1 ACATAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
** ** * * *
2658429 GTACGCTTGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
66 ACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * * * ** * *
2658494 CATTCCCAGTGTAAGATTGGACCGGATCGAGGGTTATGGGTGCACATGCTAGAATCGAGCATGTG
131 CATTCCCAGTGTAAGATCGAACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTTGGGCATGTG
* * *
2658559 CTGGTACG-GCA-TCTTTTTCGCCCAGGGCACCAT---C-G--TCG---GAGAACTTGACCGGCG
196 CTGGT--GTGCATTTTTTTTCGCCCGGGGCACCATCGCCAGCATCGTCAGAGAACCTGACCGGCG
* * * *
2658613 ACATTGGGGTTCCGGCGATTGGCAGGGGTGGGGGGTGTGCACAAATGATGGGTG-ATGGGTGATG
259 GCATTGGGGTTCCAGCGATT-------G-GGGGGGTGTGCGCACATGAT--GTGCA------ATG
**
2658677 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
308 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* * * *
2658742 CTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT-TGAATTTGGGA
373 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
2658806 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGTTGAATTTTTTTGTGCAT
438 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * ** *
2658871 GCCAACAAAAATACAAGGAACATTTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTT
503 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
* * * *
2658936 AAAAAAATCTCGAACCGTAAAAGGTTTTAAAAATTGTGGAAAATAGAAAACGAGTCGTCTTGCCA
568 AAAAAAATC-CGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
2659001 TGAAACTACACATGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
632 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
2659066 CAGGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGAAT
697 CATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
2659131 CCCGCCTCTCTGGCCGGCGTAATG----CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACG
762 CCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * *
2659192 GAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCAGCAACAGGATCGACAGC
827 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * *
2659252 ACATA-AGGGGGACCCGACCAATCCCCAGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGTGCCC
1 ACATAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
*
2659316 ATACGCTCATTTCGTGGGTTGA-TT-----TA--G-G--CA-T---A--C---G---A---AGTT
66 ACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * *
2659355 CATTCCCAGTGTAAGATCGGACCGAACCGAGGGTTACGGTTGCACATACTGGGCTTGGGCATGTG
131 CATTCCCAGTGTAAGATCGAACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTTGGGCATGTG
* * * * * * * *
2659420 CTGGTGCTCCAGTTTTCTTCGCTCGAGG---CA----C--CATCGTCAAAGAACCTAACCGACGG
196 CTGGTG-TGCATTTTTTTTCGCCCGGGGCACCATCGCCAGCATCGTCAGAGAACCTGACCGGCGG
* *
2659476 CATTGGGGTTCCAGCGATTTGGTGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGT
260 CATTGGGGTTCCAGCGA--T--T--G--GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGT
* *
2659541 ATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCATTAAAGAG
317 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
* * * *
2659605 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAAGGGGACACATTTTT
382 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
2659670 CAAATGGTTACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAATAAA
447 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * ** *
2659734 AATACAAGGATCACGTCTGCCAAGTGTGGGGCCAAAACTTATTCTAAAAAAATTTTAAAAAAATC
512 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* * * *
2659799 TGAAACCATAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTC
577 CG-AACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
2659864 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAAGA
641 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGA
*
2659929 AATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGC
706 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
2659981 ACATACGGAG
Statistics
Matches: 3722, Mismatches: 478, Indels: 234
0.84 0.11 0.05
Matches are distributed among these distances:
853 1 0.00
854 293 0.08
855 116 0.03
858 1 0.00
859 6 0.00
860 3 0.00
861 68 0.02
862 57 0.02
864 2 0.00
866 1 0.00
867 1 0.00
870 1 0.00
872 1 0.00
875 1 0.00
876 2 0.00
878 2 0.00
879 35 0.01
881 48 0.01
882 5 0.00
883 403 0.11
884 28 0.01
885 22 0.01
886 277 0.07
887 69 0.02
888 90 0.02
889 169 0.05
890 815 0.22
891 23 0.01
892 146 0.04
896 128 0.03
897 61 0.02
898 5 0.00
899 2 0.00
900 232 0.06
901 366 0.10
902 42 0.01
903 1 0.00
904 1 0.00
907 1 0.00
908 9 0.00
909 40 0.01
910 3 0.00
911 3 0.00
913 142 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
ACATAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
ACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
CATTCCCAGTGTAAGATCGAACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTTGGGCATGTG
CTGGTGTGCATTTTTTTTCGCCCGGGGCACCATCGCCAGCATCGTCAGAGAACCTGACCGGCGGC
ATTGGGGTTCCAGCGATTGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCGAACCGTA
AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCG
TAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGC
Found at i:2657603 original size:26 final size:26
Alignment explanation
Indices: 2657573--2657625 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2657563 GTTGACTTAG
*
2657573 GCATACGA-AGTTCATTCCTAGTCTAA
1 GCATAC-ATAGTTCATCCCTAGTCTAA
*
2657599 GCATACATAGTTCATCCCTAGTGTAA
1 GCATACATAGTTCATCCCTAGTCTAA
2657625 G
1 G
2657626 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACATAGTTCATCCCTAGTCTAA
Found at i:2658486 original size:26 final size:26
Alignment explanation
Indices: 2658456--2658508 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2658446 GTTCACTTAG
2658456 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2658482 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2658508 G
1 G
2658509 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2662459 original size:898 final size:896
Alignment explanation
Indices: 2660083--2663622 Score: 4789
Period size: 897 Copynumber: 4.0 Consensus size: 896
2660073 TTGGCTTATT
* * * * * * * * * * * *
2660083 CATCCTGCCCCTCTGGTCGGCTGAGCACCGGCACGCTCGTTTCATGGATTGACATGGGCAAACGG
1 CATCCTGCCTCTCTGGCCGACTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGG
* * * *
2660148 AGTTCATTCCCAGTTTAAGCATACAGAGTTCATTCCCAGAGTAAGATCAGACCGGACCGAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTT
* * * * * * *
2660213 ACGGGTGTACATGCTGGGCTCGAGCATGTGCAGGTGTCACATTTTTTTT-GCCTGGGGCACCAT-
131 GCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCCGGGGCACCATC
* *
2660276 -C----G--T---CGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATTGGGGGGCGGGGGGG
196 GCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGTGGGGGGG
* * *
2660331 TGTGCGCACATCATGTGTGATGGTTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATC
261 TGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
2660396 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
326 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
2660461 ATTAAAGTGTCTGAAATGGGGACATTTTTTTAAAATAGTCACAAAATCTTGTACACTTCGAGTTT
391 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
* * *
2660526 TTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCA
456 TTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACA
* * * * *
2660591 AAATTCCTTCTGAAAAAATTTTTAAAAAATTCAGAACTGTAAAAAGTTTCAAAAATCGTGAAAAA
521 AAACTCCTTCTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
*
2660656 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
586 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
*
2660721 CAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
651 CAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
2660786 TATCGATCCACAGCTTGCGCATCCCACCACTCTAGCCGACGTAGTGCCCGCCCGCCCGCTCGTTT
716 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTT
* **
2660851 TGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTCACG
781 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGCG
* * * * *
2660916 GTAGCAGGATCGGCAG--CACATAGGGGGGAACCCGACCGATCCCCGACTTGCA
846 GCAGCAGGATCGACAGTACGCA-AGGGGGG-ACCCG-CCGATCCCCAACTTGCG
* *
2660968 CATCCTGCCTCTCTGGCC-AGCTGAGCGCCCACACGTTCATTTTTGTGGGTTGACTTAGGCATAC
1 CATCCTGCCTCTCTGGCCGA-CTGAGCGCCCGCACGTTCA-TTTCGTGGGTTGACTTAGGCATAC
* * * * *
2661032 GTAGTTCATTCCCAGTCTAAGAATATGAAGTTCATTCACAGTGTAAGATCAGACCAGACC-AGGG
64 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGA-GG
* * ** ** * * *
2661096 GTTGCGGGTGCACATTC-GAGGCTCGGGCATGTACTGGTATCGTATTTGTTTTCGCCCGTGGCAC
128 GTTGCGGGTGCACATGCTG-GGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCCGGGGCAC
* * * * * *
2661160 CATCG-TCGGAGCATCACCGGAGAACCTAACCAGCGGCATTAGGGTTCCGACGAATGGGGGG-CG
192 CATCGCT-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGTGG
* * * * *
2661223 GGGGG-GTGCGCACATGATGTGCGATGGATACTGGTACTTGGCCCTTATGTTGGCCCCCTATCCT
256 GGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * * *
2661287 TCATCAAACGTCCAGAACTCACACCCCTTTAAAGAGAATTTGAGATTTTACAGGTTTGCAGTCAG
321 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * * *
2661352 TAGCGATTAAAGTGTTTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCA
386 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCG
* *
2661417 AGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAATGATCATGTCTACCAAGTTTGG
451 AGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
2661482 GG-CTAAAACTCCTTCTGAAAAAGTTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGT
516 GGAC-AAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* * * *
2661546 GAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATG
580 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
*
2661611 AATTTACAAGCCATAAAAATGGTATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTA
645 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
2661676 CCACCCTATCGATCCATGGCTTGCGCATTCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGC
710 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * ** *
2661741 TTGTTTCATC-GTATGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGAG
775 TCGTTTCGTCGGT-TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAG
* * * *
2661805 GGTTGTGGCAGCAGGATCAATAGTACGCAAGGGGGGACCCAGCTGATCCCCAACTTGCG
839 GGTTGCGGCAGCAGGATCGACAGTACGCAAGGGGGGACCC-GCCGATCCCCAACTTGCG
* * *
2661864 CATCCTGCCTTTTTGGCCGACTGAGCGCCCGCACGTTCATTTCGTTGGTTGACTTA-GCGATACG
1 CATCCTGCCTCTCTGGCCGACTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGC-ATACG
* * *
2661928 GAGTTCATTCCCAGTCTAAGCATTCGGAGTTCATTCCCAGTGTAAGATCGGACCAAACCGAGGGT
65 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGT
* * * *
2661993 TGTGGGTGCACATGCTGGGCTCGGGCAAGTGTTGGTGCCACATTTTTTTTCACCTGGGGCACCAT
130 TGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCCGGGGCACCAT
* * *
2662058 TGCTGGAGCATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCGAAGATTGGGGGGTGGGGGG
195 CGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGTGGGGGG
* *
2662123 GTTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCA
260 G-TGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
2662188 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCTAGTAG
324 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
2662253 CCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCCTGTACACTTCGAGT
389 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
*
2662318 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGA
454 TTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGA
* *
2662383 CAAAACTCCTTCTGAAATAA-TTTTAAAAGAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
519 CAAAACTCCTTCTGAAAAAATTTTTAAAA-AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* * *
2662447 AATTAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTCAGGGACCATTGTATGAAT
583 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* * *
2662512 TTACAAGCCATAAAAATGGCATTGGCTTGGTAGAAATATGAAGATGTGCCTAAATCCACCTACCA
648 TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
2662577 CCCTATCGATACACGGCTTGCGCATCTCGCCTCTCTGGTCGGCGTAGTGCCTGCCCGCCCGCTCG
713 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
** * * *
2662642 TTTCGTCGGTTGGCTTAGGCATATAGAGTTCTTTCCTAGTCTAAGATTGGACCAGACCGAGGGTT
778 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTT
* ** * * *
2662707 GCAGCAGTGGGA-CTGACAGTATGC-AGAGGGGACCCTGCCGATCCCCAGCTTGCG
843 GCGGCAGCAGGATC-GACAGTACGCAAGGGGGGACCC-GCCGATCCCCAACTTGCG
* * * * * *
2662761 CATCCTGCCCCTCTGGCTGGCTGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
1 CATCCTGCCTCTCTGGCCGACTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGG
*
2662826 AGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTT
* ** **
2662891 GCGGGTACACATGCTGGGCTTAGGCATGTGCTGGTGCCGTATTTTTTTTCACCCGGGGCACCATC
131 GCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCCGGGGCACCATC
* * * * * * * *
2662956 GCCGAAGCATCGCCGGAGAACTTGACTGACAGCATTGGGGTTCTGGCGATTGGGGGGGTGGGGGG
196 GCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGGTGGGGGG
* * * *
2663021 GTGTGCTCATATCATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCAT
260 GTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
2663086 CAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATC-GGTTTGCTGCCAGTAG
325 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTGCCAGTAG
* * *
2663150 CCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
389 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
* *
2663215 TTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCCACCAAGTTT-GGGA
454 TTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGA
*
2663279 CCAAAACTCCTTCTGAAAAAATTTTTAGAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
519 -CAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
2663344 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAAGCTTAAGGGACCATTGTATGAAT
583 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
*
2663409 TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAAAGATGTGCCTAAACCCACCTACCA
648 TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * ** *
2663474 CCCTATCGATCCATGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCTACTCA
713 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
* * * * * *
2663539 TTTCGTCAGTTGGCTTA-GCTATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAAGGT
778 TTTCGTCGGTTGGCTTAGGC-ATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGT
* **
2663603 TACGATAGCAGGATCGACAG
842 TGCGGCAGCAGGATCGACAG
2663623 CACACAGGTG
Statistics
Matches: 2316, Mismatches: 298, Indels: 70
0.86 0.11 0.03
Matches are distributed among these distances:
885 32 0.01
886 111 0.05
887 12 0.01
893 1 0.00
894 2 0.00
895 177 0.08
896 599 0.26
897 786 0.34
898 593 0.26
899 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (896 bp):
CATCCTGCCTCTCTGGCCGACTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTT
GCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCCGGGGCACCATC
GCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGTGGGGGGG
TGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
TTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACA
AAACTCCTTCTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGCG
GCAGCAGGATCGACAGTACGCAAGGGGGGACCCGCCGATCCCCAACTTGCG
Found at i:2662854 original size:26 final size:26
Alignment explanation
Indices: 2662818--2662870 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2662808 GTTGACTTAG
2662818 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
2662844 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
2662870 G
1 G
2662871 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTGTAA
Found at i:2669311 original size:886 final size:884
Alignment explanation
Indices: 2666060--2679620 Score: 16207
Period size: 886 Copynumber: 15.3 Consensus size: 884
2666050 TGTGACACAG
* * * * * * *
2666060 GGGGGGAACCGACCGATCCCTGGCTTGTGCATCCTGCCCCTTTAGCCGGTTGAGCGCCCGCACGC
1 GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCT-GGCGGCTGAGCG-CCGCACGC
** * *
2666125 TCGTTTCACGGGTTGACTTAGGTATGCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
64 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * *
2666190 CAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGTTGGGCTCAGGCATGTGTTGGTG
129 CAGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
** * * *
2666255 CCA-CATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGACGGGAT
194 CCAGCATTTTTTTTTGCCCGGGGCACCATC--C-GAGCATCGTCGGAGAACCTGACCGGCGGCAT
* *
2666319 TGGGGTTTCGACGATTGGGGGGCTGGGGAGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTT
256 TGGGGTTCCGACGATTGGGGGG-T-----GTGT--GCACATGATGTGCGATGGGTGCTGGTACTT
* * *
2666384 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTTAAAAAGCGTT
313 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
2666449 TGGGGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
378 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
2666514 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAGA
443 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * *
2666579 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCCTGA
508 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGA
* * * * * *
2666644 ACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAATCATCTTACCATGAAAATTTACAT
573 ACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
*
2666709 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATA
638 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
* * * * *
2666774 TGATGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACTTGCAG-ATCTCGCCTCTCTA
703 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGCCTCTCTG
* * * * * ** *
2666838 ACCGGTGTACTGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCT
767 GCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * * * * *
2666903 AGTCTAAGATCAGACCAAACCGAGGGTTGTGGCAGTAGGATTGGCAGCACACA
832 AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * *
2666956 GGGGGGACTCGATCGATCCCTGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCTGTACGC
1 GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC-GGCTGAGCGCC-GCACGC
** ** * * * *
2667021 TTTTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGAAGTTCATTTC
64 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * * *
2667086 CTGTGTAAAATCGGATCAGACTGACGGTTGCGAGTGCACAAGCTGGGCTCGGGCATGTGCTGGTG
129 CAGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ***
2667151 CC-GCATTTTTTTTT-CACCTCGAGCACCAT-C--G---C--CGGAGAACCTGACCGATAGCATT
194 CCAGCATTTTTTTTTGC-CC-GGGGCACCATCCGAGCATCGTCGGAGAACCTGACCGGCGGCATT
* * * *** * *
2667206 GGGGTTCCGCCCATTGGGGGG-GCG-G-AGGGGGTGTGCGCACATGATGG-GTATCGGTACTTGG
257 GGGGTTCCGACGATTGGGGGGTGTGTGCACATGATGTGCG---ATG--GGTG-CT-GGTACTTGG
*
2667267 CCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
315 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
2667332 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGATAGTTTTTTCAAATG
380 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
2667397 GTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
445 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * * *
2667462 AGGATCACGTCTTCCAAGTTTGGGGCGAAAAATCCTTCTGAAAAAATTTAAAAAAAATCCCAAAC
510 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAAC
* * *
2667527 CGTAAAAGGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGA
575 CGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
*
2667592 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATG
640 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATG
* * * *
2667657 AAGATGTGCCTAAACCCAGCTACCAATCC-AT-G-T--A----TTACGCATCCCGTCTCTCTGGC
705 AAGATGTGCCTAAACCCACCTACC-ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC
* * * * * *
2667713 CAGCATGGTGCACGCACACCCGCTCGTTTCGTCGGTTGGCTTAGGCATATC-GAGTTCATTCCCA
769 CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA-CGGAGTTCATTCCCA
* * * * * **
2667777 GTCTAAGATTAGACCAGACCAAGGGTTGCAGCAGCAGGATCAGTAGCACAAA
833 GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * * *
2667829 GGGGGGGACCCGACCGATCACCGGCTTGTGCATCCTGCCCCTCTGGTCGGCTGAGCTCCCGCACA
1 -GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG-CGGCTGAGC-GCCGCACG
* * * * **
2667894 TTCGTTTCGTGGGTCGATTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTC
63 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
2667959 CCAGTGGAAGATTGGACCGGACCGAGGGTTGCGGGTGCATATGCTGGGCTCGGGCATGTGCTGGT
128 CCAGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
2668024 GTCA-CATTTTTTTTCGCTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCA
193 GCCAGCATTTTTTTTTGCCCGGGGCACCAT--CC-GAGCATCGTCGGAGAACCTGACCGGCGGCA
* * * *
2668088 TTGCGGTTTCGATGATTGGGGGGGCGAGGGGGGTGTGTGCACGTGATGTGCGA-GGGTGCTGGTA
255 TTGGGGTTCCGACGATT----------GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTA
** *
2668152 CCTTGGCCCTTATATTGGCCCCCTATTGCTCATCAAACCTCTAGAAACTCACACCCCCTTAAAGA
310 -CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AACTCACACCCCCTTAAAGA
* * *
2668217 GCA-TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAATGGGGATAATTTT
373 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTT
* *
2668280 TTCAAATTGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAA
437 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* *
2668345 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAA
502 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* * *
2668410 TACCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACT
567 TCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
2668475 TCACATGAAGGCTTAAGGGACCATTGTAAGAATTTACAGGCCATAAAAATGGCATTGGCATGGTA
632 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
** *
2668540 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCT
697 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* * * *
2668605 CTCTGGCCCGCGTAGTGCCCACCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
762 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
2668670 TTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGCAACACGTA
827 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * * * * *
2668728 GGGGGGCCCCGATTGATCCCCGGCTTGCACATCTTGCCGCTCTGGTCGACTGAGCGTCGCACGCT
1 GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG-CGGCTGAGCGCCGCACGCT
* * * *
2668793 CGTTACGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCCAAGCATAAGGAGTTCATTCCC
65 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
2668858 AGTGTAAGATCGAACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTG-
130 AGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * *
2668922 CAGCATTTTTTCTTTGCCTGGGGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCGGCGGCTT
195 CAGCATTTTTT-TTTGCCCGGGGCACCAT--CC-GAGCATCGTCGGAGAACCTGACCGGCGGCAT
*
2668987 TGGGGTTCC-AGCGATT-GGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTT
256 TGGGGTTCCGA-CGATTGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
2669050 ACATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATT
320 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
2669115 TTATAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGCGACAC-TTTTTCAAATGGTCAC
385 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
2669179 AAAATCCTATACACTTCGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
450 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * * * ** * ** *
2669244 CAGGTCTACCAATTTTGGGGGCGAAACTCCTTCCAAAAAAATTTTTAAAAAATCTTGAACTGTAA
515 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAA
* * * * * *
2669309 AAAGTTTCAAAAATCTTGAAAAGTAGAAAATGAGTCGTTTTGCCATGAAACTCCACATGAAGGCT
580 AAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* *
2669374 TAAGGGACCATTGTATGAATTTACAAGCCATAACAATGGCATTGGCATGGCAGAAATATGAAGAC
645 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
* * *
2669439 ATGCCTAAACCCA-CTAACCACCCTATCGATCCACGGATTGCGCATCCCGCCTCTCTGGTCGGCG
710 GTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCG
* * * * * *
2669503 TAGTGCCCGCCTGCCCGCTCATTTCATCGATTGGCTTAGGCAAATGGAGTTCATTCCCAGTCTAA
774 TAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2669568 GATC-GAACCAGACCGAGGGTTGCAGCAGCAAGATCAGTAACACGCA
839 GATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * * * * *
2669614 GGGGGGGACTC-AGTCGATCCTCGACTTGCGCATCCTGCCCCTCTAGCTAGCTGAGCACCCACAC
1 -GGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC-GGCTGAGC-GCCGCAC
** * **
2669678 GCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGTTCATT
62 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * ** * **
2669743 CCTAGTGTAAGATC-AGACCGGACCGAAAGTTACGGGTGCACATGCTGGGCTCAAGCATGTGCTG
127 CCCAGTGTAAGATCGA-ACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
2669807 GTGCC-GCATTTTTTTTTGCCTGGGGCACCAT-----C-TC--CAGAGAACTTGACCGACGGCAT
191 GTGCCAGCATTTTTTTTTGCCCGGGGCACCATCCGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* *
2669863 TGGGGTTTCGACGATTGGGGGGCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
256 TGGGGTTCCGACGATT-----G--GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTG
* ** *
2669928 TCCCTTATATTGGCCCCCTGCCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
314 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
2669993 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-GAAAATGGGGACACTTTTTTCAAA
379 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAA
* * * *
2670057 TGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTATGCATGCCAAAAAAAAAT
443 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAAT
* * *
2670122 ACAAGGATCACATCTACTAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCA
507 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
* * * *
2670187 AACCGTCAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGATACTTCGCA
572 AACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* * *
2670252 TGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCACAAAAATGGCCTTGGCATGGCAGAAAT
637 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * * *
2670317 ATGAAGATGTGCCTAAACCCACCAACCACCCTACCGATCCACGGCATGCGCATCTCGCCTCTCTG
702 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * * *
2670382 GCCGACATAGTGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCGTTCCC
767 GCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** ** * * * *
2670447 AGTCTGAGATCAGACTAGACCGAGGGTTGCGATAGTAGGATTGGCAGCATGCA
832 AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * * * * * * * *
2670500 GGGGGGGACCTGACCAATCCCCGGCTTGTGC-TGCTTGTCCCTCTGGCTAGCTAAGCGCTTGTAC
1 -GGGGGGACCCGATCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGC-GGCTGAGCGC-CGCAC
* *
2670564 GCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
62 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * *
2670629 CCCAGTGTAAGATTGGACCGGACCGAGGCTTACGGGTGCACATGCTAGGCTCGAGCATGTGCTGG
127 CCCAGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
2670694 TGCC-GCATTTTGTTTTCGCCCAGGGCACCAT-------T-GTCGGAGAACTTGACCGGCGGCAT
192 TGCCAGCATTTT-TTTTTGCCCGGGGCACCATCCGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * * *
2670750 TGGGGTTCCGGCGATTGGCATGGGTGGGGGGGTGTGCACAAATGATGGGAGATGGGTGCTGGTAC
256 TGGGGTTCCGACGA-T----T--G-GGGGGTGTGTGCAC--ATGATGTGCGATGGGTGCTGGTAC
* *
2670815 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAAAGCA
311 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
2670880 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TGAATTGGGGACACTTTTTTCA
376 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
2670944 AATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
441 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * **
2671009 TACAAGGATCATGTCCACCAAGTTTGGGGCCAAAACTCCTTCTGAAACAATTTTAAAAAAATCTA
506 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
*
2671074 GAACCGTAAAAAGTTTTAAAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
571 GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * * *
2671139 ATGAAGGCTT-AGGAACTATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCAGGGCAAAAA
636 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
* * *
2671203 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGAATCTCGCCTCTCT
701 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * * * * *
2671268 GGCTGGCGTAATGCCCGCCCGCCTGCTCGTTTCATCGCTTGGCTTAGGCATACGGAGTTCATTCT
766 GGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* ** * * ** * *
2671333 CAGTCTAAGATTAGACCGGATTGAGGGTTGCAGCAACAGGATCGACAGCATGTA
831 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * *
2671387 GGGGGGACCCGACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGCTAAGCGCCTGCACGC
1 GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG-CGGCTGAGCGCC-GCACGC
* *
2671452 TCATTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAG--T--G--TA---AG---A-T--
64 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
2671502 C--------A--G-ACCGGACCGAGGGTTGTGAGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
129 CAGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
2671556 CCA-CATTTTTTTTTGCCCGGGG---CA--C---CATCGTCGGAGAACCTGACCGGCGGCATT-G
194 CCAGCATTTTTTTTTGCCCGGGGCACCATCCGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * *
2671611 GGTTTCAACGATTTAGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGGTACTTGG
259 GGTTCCGACGA-TT-------GGGGGGTGTGTGCACATGATGTGCGATGGGTGC-TGGTACTTGG
**
2671676 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACCTCACACCCCCTTAAAGAGCATTT
315 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-CTCACACCCCCTTAAAGAGCATTT
*
2671741 GAGATTTTACA-GTTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAA
379 GAGATTTTACAGGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * *
2671805 TGGTCACAAAATCCTATACACTTCAAAGTTTTTAGCTGAATTTTTTTGTGGAAGCCAACAAAAAT
443 TGGTCACAAAATCCTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
* * *
2671870 ACAATGGATCATGTCTACCAAGTGTGGGGCC-AAACTCCTTCTGAAAAAATTTTAAAAAAATCTC
507 ACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
* * * *
2671934 GAACAGT-AAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCATCTTGCCGTGAAACTTCAC
571 GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
2671997 ATGAA--CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGGCAGAAA
636 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
* * *
2672060 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCT
701 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * *
2672125 GGCCGGCGTAGTGCCCGCCAGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
766 GGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* ** * * ** *
2672190 CAGTCCAAGATCAGACCAAACCGAGGGTTGTGGCAACAGGATCAATAGCACACAA
831 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC-A
* * * * * *
2672245 GGGGGGACCC-AGTCGATCCCCAGCTTGCGCATCCTACCCCTC-GATCGACTGAGCACCCGTACG
1 GGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTG-GCGGCTGAGC-GCCGCACG
* * * * *
2672308 CTTGTTTTGT-GG--GA-TGA-GCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTC
63 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
2672368 CCAGTGTAAGATCGAACC-GACCGAGGGTTGTGAGTGCACATGCTAGGCTCGGGCATGTGCTGGT
128 CCAGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
* *
2672432 GCCA-CATTTTTTTTTGCCCGGGGCACC-T------ATCGCCGGAGAACCTGATCGGCGGCATTG
193 GCCAGCATTTTTTTTTGCCCGGGGCACCATCCGAGCATCGTCGGAGAACCTGACCGGCGGCATTG
* *
2672489 GGGTT-CGACGATTGGGGGCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGC
258 GGGTTCCGACGATT-------GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGC
2672553 CCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACACCCCCTTAAAGAGCATTTGA
316 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
2672617 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATG
381 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATG
* *
2672682 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATAGA
445 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
***
2672746 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAATTTAGAAC
510 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAAC
*
2672810 CGTAAAAAG-TTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
575 CGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
**
2672874 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATG
640 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATG
* * *
2672939 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTCGCCTCTCTAGCC
705 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC
* * **
2673004 GGCTTGGTGCCCGCCCGCCCGCTC-TTGTCGTCAATTGGCTTAGGCATACGGAGTTCATTCCCAG
770 GGCGTAGTGCCCGCCCGCCCGCTCGTT-TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
2673068 TCTAAGATTAGATCGGATCAAGGGTTGCAGCAGCAGGATTGGTAGCATGCA
834 TCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * *
2673119 GGGGGGACCTGA-CTGATCCCAGGCTTGCGCACCCTGCCCCTCTGGTCGG-GGAGCGCCCGCACG
1 GGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCTGCCCCTCTGG-CGGCTGAGCG-CCGCACG
* * ** * * * *
2673182 CTCATTTCATGACTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAGGCATACGAAGTTCATTC
63 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * ** *
2673247 CCAATGTAAGATC-AGACCAAACCGAGCATTGCGGGTGCACGTGCTGGGCTCGGGCATGTGCTGG
128 CCAGTGTAAGATCGA-ACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * * *
2673311 TGTC-GTA-TATTTTTCGCCTGGGGCACCAT-C--G--T--T-GGAGACCCTGACCGACGGTATT
192 TGCCAGCATTTTTTTTTGCCCGGGGCACCATCCGAGCATCGTCGGAGAACCTGACCGGCGGCATT
* * *
2673366 GGGGTTCCGACGATTGGGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTAGCCCT
257 GGGGTTCCGACGATT---GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
2673431 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACCCCCCCTTAAAGAGCATTTGAGAT
319 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
2673496 TTTACTGGTTTGATGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
384 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
2673561 CAAAATTCTGTACACTTCGAGTTTTTAGCT-AACTTTTTTTATGCATGCCAACAAAAATACAAGG
449 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * * **
2673625 ATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAAATCTTGAACCGT
513 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGT
* * *
2673690 AAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCCCATGAAGG
578 AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
*
2673755 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAGATGAAG
643 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
* * * *
2673820 ATGTGCCTAAACCAACCTACCACCCTATCGATCCACTGCTTGTGCATCCTGCCTCTCTGGCCGGC
708 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGC
* * *
2673885 GTAGTGCCCGCCCGCCCTCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTA
773 GTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
2673950 AGATCGGACCGGACCAAGGGTTGTGGTAGCAGGATCGATAGCA-GCA
838 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * * * *
2673996 GAGGGGACACGACCGATCCCCGGCTTGCTCATCCTGCCCCTCTAGCCGACTGAGCGCCCGCACGC
1 GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCT-GGCGGCTGAGCG-CCGCACGC
* * * *
2674061 TCATTTCGTGGGTTGACTTAGGCGTTCGTAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
64 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
2674126 CAGTGTAAGATC-AGACCAGACCGAGGGTTACAGGCGCACATGTTGGGCTCTGGCATGTGCTGGT
129 CAGTGTAAGATCGA-ACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
* *
2674190 GCC-GCATTTTTTTTGGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
193 GCCAGCATTTTTTTTTGCCCGGGGCACCAT--CC-GAGCATCGTCGGAGAACCTGACCGGCGGCA
* *
2674254 TTGGGGTTCCGACGATTAGGGGGCGGTGAGGGGTGTGCGCACATGATGTGGGTTGGGTG-T--T-
255 TTGGGGTTCCGACGATT--GGGG-GGT-----GTGT--GCACATGATGTGCGATGGGTGCTGGTA
*
2674315 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
310 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * *
2674380 ATTTGGGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTC
375 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
2674445 AAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAA
440 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* *
2674510 ATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAATCT
505 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCC
* * *
2674574 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCCTCTTGCCATGAAACTTCA
570 CGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
2674639 CATGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGTCATTAGCATGGCAGAA
635 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* **
2674704 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGCGCATCCTTCCTCTC
700 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * * * *
2674769 TGGTCGGCTTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTAGGCTTAGGCATATGGAGTTCATTC
765 TGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * ** * *
2674834 CCAGTCTAGGATCAGACCAGACCAAGGGTTACATCAGCAGGATTGGTAGCATGCA
830 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * * * * *
2674889 GGGGGGACCCGACCGATCCCCGACTTGCGCATACTGTCCCTCTGGCTGGTTGAGCACCCGCACTC
1 GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC-GGCTGAGC-GCCGCACGC
* * * *
2674954 TCATTTCGTGGGTTGACTTAGGCGTACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCC
64 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * **
2675019 CAGTGTAAGATTGAATCAGATCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTAATG
129 CAGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ** * * *
2675084 -CTGCATTCTTTTTCACCCAGGG---CA--C---CATCGTCGGAGAACCTGACCGACGGCATTAG
194 CCAGCATTTTTTTTTGCCCGGGGCACCATCCGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* ** *
2675140 GGTTTCGGTGATTGCGGGGCGGGGGGTGTGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCC
259 GGTTCCGACGATT----GG-GGGGTGTGTGCAC--ATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
2675205 CTTATATTGGCCCCCTGTCCCTCATCAAACCTTGAGAACTAACACCCCCTTAAAGAGCAATTGAG
317 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
2675270 ATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGT
382 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * * *
2675335 CACAACATTCTGTACACTTCGATTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAG
447 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* *
2675400 GATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATTTTCAAAAAAATCCCGAACC
512 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAAATCCCGAACC
* * *
2675465 GTAAAAAGTTTCAAAAATCATGAATAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAA
576 GTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
2675530 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGA
641 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGA
* ** **
2675595 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTTGCCTCTCTGGTTG
706 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* * *
2675660 GTGTAGTGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
771 GCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
2675725 TAAGATTAGACCAGACCGATGGTTGTGGTAGCAGGATCGGTAGCACCCAA
836 TAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC-A
* ** * * * *
2675775 GGGGGGACCCGATCGATCCCCGTCTTGCGTGTCCTACCCCTCTGGCCAGCTGAGCACCCACACGC
1 GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG-CGGCTGAGC-GCCGCACGC
* *
2675840 TCGTTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
64 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
2675905 CAGTGTAAGATTGGACTAGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGGTGG-G
129 CAGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ** *
2675969 CC-GCA-TTTTTTTCGCTCGGGGCACCATCACCAGAGCATCACCGGAGAATCTGA-CGGACGGCA
194 CCAGCATTTTTTTTTGCCCGGGGCACCAT--CC-GAGCATCGTCGGAGAACCTGACCGG-CGGCA
2676031 TTGGGGTTCCGACGATCGGTGGGGAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTT
255 TTGGGGTTCCGACGAT---T---G-GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTT
* *
2676096 GGCCCTTATATT-G-CCCCTATCCCTCATCAAACCTCCAGAACTCACA-CCCTTGTAAAGAGCAT
313 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT-TAAAGAGCAT
2676158 TTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCA
377 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCA
*
2676222 AATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
441 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * ** *
2676287 TATAAGGATCACGTCTACC-AGTGTGGGGCCAAAACAACTTCTGAAAAAATTTTAAAAAAATCTC
506 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
* ** *
2676351 GAACCGTAAAAAGTTTCAAAAATTGTGAAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCA
571 GAACCGTAAAAAGTTTTAAAAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
2676416 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCACT-GCACAGGCAGA
635 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGGCAG-
*
2676480 AAATATGAAGAT-TGGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCT
698 AAATATGAAGATGT-GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
** * * * *
2676544 CTCTTACCGGCATAGTGCTCGCCCG--C-CAC----AG-C--TTGGCTTAGGCATACGGAGTTCA
762 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * **
2676599 TTCCCAGTCTAAGATCAAACCGAACCAAGGGTTGCGGCAGCAGGGTCGGTAGCACATA
827 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * *
2676657 GGGGGGGACCCGA-CTAATCGCCGGCTTGTGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGAAC
1 -GGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCTGCCCCTCTGG-CGGCTGAGCG-CCGCAC
* *
2676721 GCTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
62 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* ** * * * *
2676786 CCCAGTGTAAGAT-TAGACTGGACCGAGGGTTGTGGGTGCACTTGTTGGGCTCGGGCATGTGATG
127 CCCAGTGTAAGATCGA-ACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTG
* * * * **
2676850 GTGCC-GTATTTTTTTTTCGCCCGAGGCACCATCACCGGAGAATAGTCGGAGAACCTGATTGGCG
191 GTGCCAGCATTTTTTTTT-GCCCGGGGCACCAT--CC-GAGCATCGTCGGAGAACCTGACCGGCG
* *
2676914 GCATTGGGGTTCCAACGATTGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
252 GCATTGGGGTTCCGACGATT-------GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTA
* * *
2676979 CTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTGGAGAACTCACACCTCCTTAAAGAGC
310 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * *
2677044 ATTTGAGATTTTATAGGTTTGCTACCCGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
375 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
2677109 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTATGCATGCCAACAAAA
440 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * ** *
2677174 ATACAAGGATCACATCTACCAGGTTTTGATGCCAAAACTCCTTCTGAAAAAAATTTAAAAAAAAT
505 ATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAAAT
* * * * *
2677239 CCCGAACCATAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAATTT
568 CCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
** * * * * * *
2677304 CACATGAAGGCTTAAGGGACCATTGTACAAATTTGCAAGTCATAAAAATAGCATTGGTACGGCAA
633 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
** *
2677369 AAATATGAAGATACGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
698 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* * * ** *
2677434 TCTGGCCGACGTAATGCCAGCCCGCCCGCTCGTTTCGTCGACTGGCTTAGGCATATGGAGTTCAT
763 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * * *
2677499 TCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACGCTA
828 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC-A
* * * * * * *
2677557 GGGGGGACCCGATTGAACCCCGGCTTGGGCATCCTGCCCCTTTGGCTGGCTAAGCACCCACACGC
1 GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC-GGCTGAGC-GCCGCACGC
* * ** * *
2677622 TCATTTCGTGGGTTGACTTAGGCGTATAGAATTCATTCCCAGTCTAAGCATACTGAGTTCATTCC
64 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * **
2677687 CAGTGTAAGATCGAACCAAACTGAGGGATATGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
129 CAGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * **
2677752 TC-GCATTTCTTTTTCGCCTAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
194 CCAGCATTT-TTTTTTGCCCGGGGCACCAT--CC-GAGCATCGTCGGAGAACCTGACCGGCGGCA
2677816 TT-GGGTTCCGACGATTGGGGGCCGATGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTAC
255 TTGGGGTTCCGACGATTGGGGG--G-T----GTGT--GCACATGATGTGCGATGGGTGCTGGTAC
*
2677879 TT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAGAGAGCA
311 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
2677943 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
376 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
2678008 AATGGTCACAAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
441 AATGGTCAC-AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAA
* * * *
2678073 AATGCAAGGATCACATCTACCAAG-TTGGGGACAGAAACTCCTTCGTGAAAAAATTTTAACAAAA
504 AATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTC-TGAAAAAATTTTAAAAAAA
* ** * *
2678137 TCCTGAACCGTAAAAAGTTTCGAAAATCGGTTGAAAAAATAGAGAACGAGTCGTCTTGCCATGAA
567 TCCCGAACCGTAAAAAGTTTTAAAAATC--ATG-AAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
2678202 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAA-TTACAAGCCATAAAAATGGCATTAGCATG
629 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
2678266 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCG
694 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** * *
2678331 CCTCTCTGGCCGGCATAGTGCCCGCCTACCCGCTCGTTTCATCGGTTGGATTAGGCATACGGAGT
759 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * * **
2678396 TCATTCCCAGTCTAATATCGGACCGAACCGAGGTTTGTGGTAGCAGGATTGGCAGCACATA
824 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * * *
2678457 AGGGGGA-CCTAGTCGATCCCCAGCTTGCGCATCCTACCCCTCTAGCCGGCTGAGCGCCCGCACG
1 GGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCT-GGCGGCTGAGCG-CCGCACG
*
2678521 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACCGAGTTCATTC
63 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
2678586 CTAGTGTAAGATCGGACCAGACCGAGGGATGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGCT
128 CCAGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
2678651 GTCA-CA-TTTTTTTTGCCCGGGGCACCAT-------T-GCCGGAGAACCTGACCGGCAGCATTG
193 GCCAGCATTTTTTTTTGCCCGGGGCACCATCCGAGCATCGTCGGAGAACCTGACCGGCGGCATTG
* * * *
2678706 GGGTTCCGATGATTGGGGGGACGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTCCTTGG
258 GGGTTCCGACGATT--------GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
2678771 CCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
315 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
2678836 AGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATG
380 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
2678901 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACA
445 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * ** *
2678965 AGGATCGCGGCTACCAAGTTTGGGGCTGAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCGAAC
510 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAAC
* * *
2679030 CGTAAAAAG-TTTCAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
575 CGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
2679094 AGGCTTAAGGGACCA-TGTATGAATTTACAAGCCAT-AAAATGGCATTGGCATGGCAGAAATATG
640 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATG
*
2679157 AAGATGTGCCTAAACTCGCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCTGCCTCTCTGG
705 AAGATGTGCCTAAAC-C-CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* *
2679221 CCGACATAGTGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGAATTCATTTC
768 CCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG--TTCA-TTC
* * * * * * * *
2679285 CCAGTCTAAGATC-GATCGAACTGA-GGTTACGGTAGTAGGATCGAGCAGCATGCA
830 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG-GTAGCACGCA
* * *
2679339 AGGGGAACCCG-TCGATCCTCGGCTTGTCGCATCCTGCCCCTCT-GCTGGCTGAGCGCCCGCACG
1 GGGGGGACCCGATCGATCCCCGGCTTG-CGCATCCTGCCCCTCTGGC-GGCTGAGCG-CCGCACG
2679402 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTC
63 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
2679466 CCAGTGTAAGATCGGACCAGACCGAGGGTTACGAGTGCACATGCTGGGCTCGAGCATGTGCTGGT
128 CCAGTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
2679531 GCCA-CATTTTTTTTTCGCCCGGGGCACCATCACCGAAGCATCGTCGAAGAACTTGACTGGTGGC
193 GCCAGCATTTTTTTTT-GCCCGGGGCACCAT--CCG-AGCATCGTCGGAGAACCTGACCGGCGGC
*
2679595 ATTGGGCGTTCCAACGATTGAGGGGG
254 ATTGGG-GTTCCGACGATTG-GGGGG
2679621 CGGGGGGATG
Statistics
Matches: 11003, Mismatches: 1316, Indels: 701
0.85 0.10 0.05
Matches are distributed among these distances:
852 20 0.00
853 2 0.00
854 3 0.00
856 24 0.00
857 277 0.03
858 161 0.01
859 100 0.01
860 131 0.01
861 27 0.00
863 1 0.00
864 1 0.00
865 1 0.00
867 1 0.00
871 1 0.00
872 50 0.00
873 194 0.02
874 326 0.03
875 403 0.04
876 212 0.02
877 177 0.02
878 460 0.04
879 132 0.01
880 208 0.02
881 606 0.06
882 127 0.01
883 486 0.04
884 208 0.02
885 401 0.04
886 1357 0.12
887 499 0.05
888 489 0.04
889 329 0.03
890 274 0.02
891 462 0.04
892 477 0.04
893 659 0.06
894 27 0.00
895 81 0.01
896 182 0.02
897 180 0.02
898 274 0.02
899 502 0.05
900 220 0.02
901 190 0.02
902 61 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
GGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCGGCTGAGCGCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTGTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
AGCATTTTTTTTTGCCCGGGGCACCATCCGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
TTCCGACGATTGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTT
TTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
Found at i:2670617 original size:26 final size:26
Alignment explanation
Indices: 2670587--2670639 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2670577 GTTCACTTAG
2670587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2670613 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2670639 G
1 G
2670640 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2672362 original size:26 final size:26
Alignment explanation
Indices: 2672324--2672377 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
2672314 TTGTGGGATG
* *
2672324 AGCATACGGAGTTCATTCCTAGTCTA
1 AGCATACGAAGTTCATTCCCAGTCTA
*
2672350 AGCATACGAAGTTCATTCCCAGTGTA
1 AGCATACGAAGTTCATTCCCAGTCTA
2672376 AG
1 AG
2672378 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATACGAAGTTCATTCCCAGTCTA
Found at i:2675899 original size:26 final size:26
Alignment explanation
Indices: 2675863--2675913 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2675853 TGACTTAGGA
2675863 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
* *
2675889 ATACGGAGTTCATTCCCAGTGTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
2675914 ATTGGACTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:2676507 original size:893 final size:885
Alignment explanation
Indices: 2671473--2679561 Score: 10610
Period size: 893 Copynumber: 9.1 Consensus size: 885
2671463 GTTTACTTAG
* * * *
2671473 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGAGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* *
2671538 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATCG-T-CGGAGAACCTGACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGATGCGGAGAACCTGACC
* *
2671601 GGCGGCATT-GGGTTTCAACGATTTAGGGGGCG-GGGGGTGTGCGCACATGATGTGCGATGGGTG
131 GGCGGCATTGGGGTTCCGACGA-TT-GGGGG-GAGGGGGTGTGCGCACATGATGTGCGATGGGTG
**
2671664 CTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACCTCACACCCCCT
193 C-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-CTCACACCCCCT
*
2671729 TAAAGAGCATTTGAGATTTTACA-GTTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAC
256 TAAAGAGCATTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * * *
2671793 ACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAAGTTTTTAGCTGAATTTTTTTGTGGAA
320 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTATGCAT
* *
2671858 GCCAACAAAAATACAATGGATCATGTCTACCAAGTGTGGGGCC-AAACTCCTTCTGAAAAAATTT
384 GCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* *
2671922 TAAAAAAATCTCGAACAGT-AAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCATCTTGCC
448 TAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
2671985 GTGAAACTTCACATGAA--CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
513 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
2672048 GAATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
578 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
2672113 TCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCTCATTTCGTCAGTTGGCTTAGGCATAC
643 TCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * ** *
2672178 GGAGTTCATTCCCAGTCCAAGATCAGACCAAACCGAGGGTTGTGGCAACAGGATCAATAGCACAC
708 GGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGC
* * ** * * *
2672243 AAGGGGGGACCC-AGTCGATCCCCAGCTTGCGCATCCTACCCCTC-GATCGACTGAGCACCCGTA
772 AAGGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
2672306 CGCTTGTTTTGT-GG--GA-TGA-GCATACGGAGTTCATTCCTAGTCTAA
836 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
2672351 GCATACGAAGTTCATTCCCAGTGTAAGATCGAACC-GACCGAGGGTTGTGAGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
2672415 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCTATCG--CCGGAGAACCTGAT
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACC-ATCGATGCGGAGAACCTGAC
* *
2672478 CGGCGGCATTGGGGTT-CGACGATTGGGGGCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
130 CGGCGGCATTGGGGTTCCGACGATTGGGGG-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
2672542 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACACCCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
2672606 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-T
* *
2672671 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
323 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
*
2672736 A-AAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAA
388 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * *
2672799 AAATTTAGAACCGTAAAAAGTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
453 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
**
2672863 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
518 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
2672928 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT-CTC
583 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT-
* * * **
2672992 GCCTCTCTAGCCGGCTTGGTGCCCGCCCGCCCGCTC-TTGTCGTCAATTGGCTTAGGCATACGGA
647 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTT-TCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * *
2673056 GTTCATTCCCAGTCTAAGATTAGATCGGATCAAGGGTTGCAGCAGCAGGATTGGTAGCATGC-AG
711 GTTCATTCCCAGTCTAAGATCAGA-CCGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAAG
* * * * *
2673120 GGGGGACCTGA-CTGATCCCAGGCTTGCGCACCCTGCCCCTCTGGTCGG-GGAGCGCCCGCACGC
775 GGGGGACCCGATC-GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * ** * *
2673183 TCATTTCATGACTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAG
839 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * ** *
2673230 GCATACGAAGTTCATTCCCAATGTAAGATCAGACCAAACCGAGCATTGCGGGTGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
2673295 CTCGGGCATGTGCTGGTGTCGTA-TATTTTTCGCCTGGGGCACCATCG-T-TGGAGACCCTGACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGATGCGGAGAACCTGACC
* * *
2673357 GACGGTATTGGGGTTCCGACGATT--GGGG-GGGGGTGTGCGCAAATGATGTGCGATGGGTGCTG
131 GGCGGCATTGGGGTTCCGACGATTGGGGGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
2673419 GTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACCCCCCCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
2673484 AGCATTTGAGATTTTACTGGTTTGATGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
2673549 TTCAAATGGTCACAAAATTCTGTACACTTCGAGTTTTTAGCT-AACTTTTTTTATGCATGCCAAC
326 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTATGCATGCCAAC
* * *
2673613 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAA
390 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* * **
2673678 ATCTTGAACCGTAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
455 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
2673743 TTCCCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
520 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
* * * *
2673808 AGAAAGATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACTGCTTGTGCATCCTGCC
585 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCC
* * *
2673873 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTC
650 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * *
2673938 ATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGTAGCAGGATCGATAGCA-GC-AGAGGG
715 ATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAAGGGGG
* * * * * *
2674001 GACACGACCGATCCCCGGCTTGCTCATCCTGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCATT
779 GACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
2674066 TCGTGGGTTGACTTAGGCGTTCGTAGTTCATTCCCAGTCTAA
844 TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
2674108 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTACAGGCGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* *
2674173 CTCTGGCATGTGCTGGTGCCGCATTTTTTTTGGCCCGGGGCACCATCGCCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCAT---C---G-AT-G-CGGAG
* *
2674238 AACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCGGTGAGGGGTGTGCGCACATGATGT
122 AACCTGACCGGCGGCATTGGGGTTCCGACGATT--GGGG-GGAG-GGGGTGTGCGCACATGATGT
* * *
2674303 GGGTTGGGTG-T--T-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
2674364 CACCCCCTTAAAGAGCATTTGGGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2674429 TGGGGACATTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
2674494 ATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAA
378 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* *
2674559 AATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCCTC
443 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
2674623 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGT
508 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2674688 CATTAGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTT
573 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
2674753 GCGCATCCTTCCTCTCTGGTCGGCTTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTAGGCTTAGG
638 GCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
2674818 CATATGGAGTTCATTCCCAGTCTAGGATCAGACCAGACCAAGGGTTAC-ATCAGCAGGATTGGTA
703 CATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGGT-AGCAGGATCGGTA
* * * * * * * *
2674882 GCATGC-AGGGGGGACCCGACCGATCCCCGACTTGCGCATACTGTCCCTCTGGCTGGTTGAGCAC
766 GCACGCAAGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * * *
2674946 CCGCACTCTCATTTCGTGGGTTGACTTAGGCGTACGAAGTTCATTCCCAATCTAA
831 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
2675001 GCATACGGAGTTCATTCCCAGTGTAAGATTGAATCAGATCGAGGGTTGCGGGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
** * * * *
2675066 CTCGGGCATGTGCTAATGCTGCATTCTTTTTCACCCAGGGCACCATCG-T-CGGAGAACCTGACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGATGCGGAGAACCTGACC
* * * ** * *
2675129 GACGGCATTAGGGTTTCGGTGATTGCGGGGCG-GGGGGTGTGCACAAATGATGTGCGATGGGTGC
131 GGCGGCATTGGGGTTCCGACGATTG-GGGG-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
2675193 TGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTTGAGAACTAACACCCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
2675258 AGAGCAATTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
2675323 TTTTCAAATGGTCACAACATTCTGTACACTTCGATTTTTTAGCTGAATTTTTTTATGCATGCCAA
324 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
* *
2675388 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATTTTCAAAA
389 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAA
* * *
2675453 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAATAATAGAAAATGAGTCGTCTTGCCATGAA
453 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
2675518 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
518 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
2675583 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTTG
583 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTG
** * * *
2675648 CCTCTCTGGTTGGTGTAGTGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGT
648 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * *
2675713 TCATTCCCAGTCTAAGATTAGACCAGACCGATGGTTGTGGTAGCAGGATCGGTAGCACCCAAGGG
713 TCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAAGGG
* ** * * * *
2675778 GGGACCCGATCGATCCCCGTCTTGCGTGTCCTACCCCTCTGGCCAGCTGAGCACCCACACGCTCG
777 GGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
2675843 TTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCCAGTCTAA
842 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
2675887 GCATACGGAGTTCATTCCCAGTGTAAGATTGGACTAGACCGAGGGTTACGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
2675952 CTCGGGCATGTGGTGG-GCCGCA-TTTTTTTCGCTCGGGGCACCATCACCAGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCAT---C---G-AT--GCGGAG
* * *
2676015 AATCTGA-CGGACGGCATTGGGGTTCCGACGATCGGTGGGGAGGGGGTGTGTGCACATGATGTGC
122 AACCTGACCGG-CGGCATTGGGGTTCCGACGATTGG-GGGGAGGGGGTGTGCGCACATGATGTGC
*
2676079 GATGGGTGCTGGTACTTGGCCCTTATATT-G-CCCCTATCCCTCATCAAACCTCCAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2676142 -CCCTTGTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAAT
250 CCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2676205 GGGGACACTTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTT
314 GGGGACAC-TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
2676270 GTGCATGCCAAAAAAAATATAAGGATCACGTCTACC-AGTGTGGGGCCAAAACAACTTCTGAAAA
378 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
** *
2676334 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAAATAGAAAACAAGTCGT
443 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG-AAAAATAGAAAACGAGTCGT
*
2676399 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTG
507 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
2676464 GCACT-GCACAGGCAGAAAATATGAAGAT-TGGCCTAAACCCACCTACCACCCTATCGATCCACA
572 GCATTGGCA-TGGCAG-AAATATGAAGATGT-GCCTAAACCCACCTACCACCCTATCGATCCACG
* ** * * * *
2676527 GCTTGCGCATCCCGCCTCTCTTACCGGCATAGTGCTCGCCCG--C-CAC----AG-C--TTGGCT
634 GCTTGCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
2676582 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCAAGGGTTGCGGCAGCAGGGTCG
699 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTGCGGTAGCAGGATCG
** * * * * *
2676647 GTAGCACATAGGGGGGGACCCGA-CTAATCGCCGGCTTGTGCATCCTGCCCCTCTGGTCGGCTGA
763 GTAGCACGCAAGGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * * *
2676711 GCGCCCGAACGCTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
827 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
** ** * * *
2676770 GCATACGGAGTTCATTCCCAGTGTAAGATTAGACTGGACCGAGGGTTGTGGGTGCACTTGTTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
2676835 CTCGGGCATGTGATGGTGCCGTATTTTTTTTTCGCCCGAGGCACCATCACCGGAGAATAGTCGGA
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCAT---C---G-AT-G-CGGA
** * *
2676900 GAACCTGATTGGCGGCATTGGGGTTCCAACGATTGGGGGGGGGGGGGTGTGCGCACATGATGTGC
121 GAACCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGGAGGGGGTGTGCGCACATGATGTGC
* *
2676965 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTGGAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
2677030 CCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCCGTAGCCATTAAAGTGTCTAAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2677095 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTAT
315 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * **
2677160 GCATGCCAACAAAAATACAAGGATCACATCTACCAGGTTTTGATGCCAAAACTCCTTCTGAAAAA
380 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCTG-AAAA
* * * * *
2677225 AATTTAAAAAAAATCCCGAACCATAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
443 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* ** * * *
2677290 TTGCCATGAAATTTCACATGAAGGCTTAAGGGACCATTGTACAAATTTGCAAGTCATAAAAATAG
508 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * ** *
2677355 CATTGGTACGGCAAAAATATGAAGATACGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTT
573 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * **
2677420 GCGCATCCCGCCTCTCTGGCCGACGTAATGCCAGCCCGCCCGCTCGTTTCGTCGACTGGCTTAGG
638 GCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * *
2677485 CATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCGGTAGCAGGATCGGTAG
703 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACCGAGGGTTGCGGTAGCAGGATCGGTAG
* * * * * * * *
2677550 CACGCTAGGGGGGACCCGATTGAACCCCGGCTTGGGCATCCTGCCCCTTTGGCTGGCTAAGCACC
767 CACGCAAGGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
2677615 CACACGCTCATTTCGTGGGTTGACTTAGGCGTATA-GAA-TTCATTCCCAGTCTAA
832 CGCACGCTCGTTTCGTGGGTTGACTTAGGC--ATACGAAGTTCATTCCCAGTCTAA
* * * * * **
2677669 GCATACTGAGTTCATTCCCAGTGTAAGATCGAACCAAACTGAGGGATATGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* **
2677734 CTCGGGCATGTGCTGGTGTCGCATTTCTTTTTCGCCTAGGGCACCATCGCCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTT-TTTTTCGCCCGGGGCACCAT---C---G-AT-G-CGGA
2677799 GAACCTGACCGGCGGCATT-GGGTTCCGACGATTGGGGGCCGATGGGGGTGTGCGCACATGATGT
121 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGG--GA-GGGGGTGTGCGCACATGATGT
2677863 GCGAT-GGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2677926 CACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
2677991 TGGGGACACTTTTTTCAAATGGTCACAAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTT
313 TGGGGACACTTTTTTCAAATGGTCAC-AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
2678056 TGTGCATGCCAAAAAAAAATGCAAGGATCACATCTACCAAG-TTGGGGACAGAAACTCCTTCGTG
377 TATGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTC-TG
* * * *
2678120 AAAAAATTTTAACAAAATC-CTGAACCGTAAAAAGTTTCGAAAATCGGTTGAAAAAATAGAGAAC
439 AAAAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATC--ATG-AAAAATAGAAAAC
2678184 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA-TTACAAGCCAT
500 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
2678248 AAAAATGGCATTAGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
565 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * ** *
2678313 CACGGCTTGTGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCTACCCGCTCGTTTCATCGGTT
630 CACGGCTTGCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
2678378 GGATTAGGCATACGGAGTTCATTCCCAGTCTAATATCGGACCGAACCGAGGTTTGTGGTAGCAGG
695 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTGCGGTAGCAGG
* * ** * * * *
2678443 ATTGGCAGCACATAA-GGGGGA-CCTAGTCGATCCCCAGCTTGCGCATCCTACCCCTCTAGCCGG
759 ATCGGTAGCACGCAAGGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
*
2678506 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
823 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
2678569 GCATACCGAGTTCATTCCTAGTGTAAGATCGGACCAGACCGAGGGATGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
2678634 CTCGGGCATGTGCTGCTGTCACATTTTTTTT-GCCCGGGGCACCAT---TGCCGGAGAACCTGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGATG-CGGAGAACCTGAC
* * *
2678695 CGGCAGCATTGGGGTTCCGATGATTGGGGGGACGGGGGGTGTGCGCACATGATTTGCGATGGGTG
130 CGGCGGCATTGGGGTTCCGACGATTGGGGGGA--GGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
2678760 CTGGTCCTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
2678825 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
2678890 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCA
323 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
* * ** *
2678954 ACAAAAATACAAGGATCGCGGCTACCAAGTTTGGGGCTGAAACTCCTTCTGAAAAAATTTTTAAA
388 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * *
2679019 AAATCCCGAACCGTAAAAAGTTTC-AAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAA
453 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
2679083 ACTTCACATGAAGGCTTAAGGGACCA-TGTATGAATTTACAAGCCAT-AAAATGGCATTGGCATG
518 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
2679146 GCAGAAATATGAAGATGTGCCTAAACTCGCACCTACCACCCTATCGATCCAC-GCTTGCGCATCC
583 GCAGAAATATGAAGATGTGCCTAAAC-C-CACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
2679210 TGCCTCTCTGGCCGACATAGTGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
646 TGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * *
2679274 GAATTCATTTCCCAGTCTAAGATC-GATCGAACTGA-GGTTACGGTAGTAGGATCGAGCAGCATG
711 G--TTCA-TTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTGCGGTAGCAGGATCG-GTAGCACG
* * *
2679337 CAA-GGGGAACCCG-TCGATCCTCGGCTTGTCGCATCCTGCCCCTCT-GCTGGCTGAGCGCCCGC
771 CAAGGGGGGACCCGATCGATCCCCGGCTTG-CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
*
2679399 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
2679450 GCATAC-GAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGAGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* *
2679514 CTCGAGCATGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCACCATC
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCATC
2679562 ACCGAAGCAT
Statistics
Matches: 6372, Mismatches: 687, Indels: 299
0.87 0.09 0.04
Matches are distributed among these distances:
872 47 0.01
873 80 0.01
874 159 0.02
875 389 0.06
876 186 0.03
877 175 0.03
878 480 0.08
879 135 0.02
880 202 0.03
881 217 0.03
882 117 0.02
883 488 0.08
884 29 0.00
885 335 0.05
886 324 0.05
887 76 0.01
888 206 0.03
889 245 0.04
890 139 0.02
891 85 0.01
892 448 0.07
893 643 0.10
894 10 0.00
895 83 0.01
896 3 0.00
897 33 0.01
898 166 0.03
899 391 0.06
900 230 0.04
901 190 0.03
902 61 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGATGCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATTGGGGGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAAGGGGGGA
CCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:2676774 original size:26 final size:26
Alignment explanation
Indices: 2676744--2676796 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2676734 GTAGACTTAG
2676744 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2676770 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2676796 G
1 G
2676797 ATTAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2678579 original size:26 final size:26
Alignment explanation
Indices: 2678543--2678595 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2678533 GTTGACTTAG
*
2678543 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
* *
2678569 GCATACCGAGTTCATTCCTAGTGTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
2678595 G
1 G
2678596 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:2679462 original size:25 final size:26
Alignment explanation
Indices: 2679424--2679475 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
2679414 GTTGACTTAG
2679424 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2679450 GCATAC-GAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2679475 G
1 G
2679476 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2679721 original size:13 final size:13
Alignment explanation
Indices: 2679702--2679734 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
2679692 CGAAATACAA
2679702 AAAAAATAAATAC
1 AAAAAATAAATAC
*
2679715 CAAAAAT-AATAC
1 AAAAAATAAATAC
2679727 AAAAAATA
1 AAAAAATA
2679735 GCAAAAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 2
0.81 0.10 0.10
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAATAAATAC
Found at i:2686084 original size:14 final size:15
Alignment explanation
Indices: 2686049--2686098 Score: 50
Period size: 14 Copynumber: 3.3 Consensus size: 15
2686039 TATGGGGCAT
*
2686049 AAAAAAAATAAA-AAC
1 AAAAAAAA-AAAGAAG
*
2686064 AACAAAAAAAGAGAA-
1 AA-AAAAAAAAAGAAG
2686079 AAAAAAAAAAAGAAG
1 AAAAAAAAAAAGAAG
2686094 AAAAA
1 AAAAA
2686099 TTGGTTATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
14 11 0.37
15 11 0.37
16 8 0.27
ACGTcount: A:0.86, C:0.04, G:0.08, T:0.02
Consensus pattern (15 bp):
AAAAAAAAAAAGAAG
Done.