Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 22 of 93
Found at i:2686087 original size:17 final size:17
Alignment explanation
Indices: 2686049--2686098 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
2686039 TATGGGGCAT
*
2686049 AAAAAAAATA-AAAACAA
1 AAAAAAAAGAGAAAA-AA
*
2686066 CAAAAAAAGAG-AAAAA
1 AAAAAAAAGAGAAAAAA
2686082 AAAAAAAAGAAGAAAAA
1 AAAAAAAAG-AGAAAAA
2686099 TTGGTTATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
16 10 0.37
17 13 0.48
18 4 0.15
ACGTcount: A:0.86, C:0.04, G:0.08, T:0.02
Consensus pattern (17 bp):
AAAAAAAAGAGAAAAAA
Found at i:2687405 original size:33 final size:33
Alignment explanation
Indices: 2687362--2687705 Score: 409
Period size: 33 Copynumber: 10.5 Consensus size: 33
2687352 ATAAAATAAA
2687362 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * *
2687395 TTTTAAGCCCAGTTTATCTGGCCATCAATGAAA
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
*
2687428 ATTTAAGCCCAGTTTATCTGGCC-TCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCAT-TAATGAAG
* *
2687461 ATTTAAGCCCAGTTTATCTGGCCATCAATG-AT
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
*
2687493 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* *
2687526 CTTTAAGCCCAGTTTATCTGGCTC-TCAATGAA-
1 ATTTAAGCCCAGTTTATCTGGC-CATTAATGAAG
2687558 ACTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
1 A-TTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * * *
2687592 CTTTAAGCCCAGTTCATCTGGCCATCAATGAGG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * *
2687625 TTTTAAACCTAGTTTATCTGG-C-TTCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATT--AATGAAG
*
2687658 ATTTAAGCCCAGTTTAGCTGGCC-TTCAAT-AA-
1 ATTTAAGCCCAGTTTATCTGGCCATT-AATGAAG
*
2687689 ATTTAAGCCAAGTTTAT
1 ATTTAAGCCCAGTTTAT
2687706 TTAGCCCCAA
Statistics
Matches: 268, Mismatches: 33, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
31 16 0.06
32 34 0.13
33 213 0.79
34 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (33 bp):
ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
Found at i:2687466 original size:66 final size:66
Alignment explanation
Indices: 2687359--2687705 Score: 465
Period size: 66 Copynumber: 5.3 Consensus size: 66
2687349 AAAATAAAAT
*
2687359 AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGTTTTAAGCCCAGTTTATCTGGCCATCAAT
1 AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAAT
2687424 G
66 G
*
2687425 AAAATTTAAGCCCAGTTTATCTGGCC-TCAAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAA
1 AAAATTTAAGCCCAGTTTATCTGGCCAT-TAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAA
2687489 TG
65 TG
* * *
2687491 -ATATTTAAGCCTAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCTC-TCAA
1 AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGC-CATCAA
2687554 TG
65 TG
* * *
2687556 AAACTTTAAGCCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTCATCTGGCCATCAAT
1 AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAAT
2687621 G
66 G
*** * * * *
2687622 AGGTTTTAAACCTAGTTTATCTGG-C-TTCAAATGAAGATTTAAGCCCAGTTTAGCTGGCCTTCA
1 AAAATTTAAGCCCAGTTTATCTGGCCATT--AATGAAGATTTAAGCCCAGTTTATCTGGCCATCA
2687685 AT-
64 ATG
*
2687687 -AAATTTAAGCCAAGTTTAT
1 AAAATTTAAGCCCAGTTTAT
2687706 TTAGCCCCAA
Statistics
Matches: 250, Mismatches: 24, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
64 16 0.06
65 60 0.24
66 174 0.70
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (66 bp):
AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAAT
G
Found at i:2687597 original size:131 final size:131
Alignment explanation
Indices: 2687362--2687705 Score: 486
Period size: 131 Copynumber: 2.6 Consensus size: 131
2687352 ATAAAATAAA
* *
2687362 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAGTTTTAAGCCCAGTTTATCTGGCCATCAATGAA
1 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATG-A
*
2687427 AATTTAAGCCCAGTTTATCTGGCCTCAAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATGA
65 AATTTAAGCCCAGTTTATCTGGCCTCAAATGAAGATTTAAGCCCAGTTCATCTGGCCATCAATGA
2687492 -T
130 GT
*
2687493 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCTC-TCAATGA
1 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGC-CATCAATGA
* *
2687557 AACTTTAAGCCCAGTTTATCTGGCCAT-TAATGAAGCTTTAAGCCCAGTTCATCTGGCCATCAAT
65 AA-TTTAAGCCCAGTTTATCTGGCC-TCAAATGAAGATTTAAGCCCAGTTCATCTGGCCATCAAT
2687621 GAGGT
128 GA-GT
* * *
2687626 -TTTAAACCTAGTTTATCTGG-C-TTCAAATGAAGATTTAAGCCCAGTTTAGCTGGCCTTCAAT-
1 ATTTAAGCCTAGTTTATCTGGCCATT--AATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATG
*
2687687 AAATTTAAGCCAAGTTTAT
64 AAATTTAAGCCCAGTTTAT
2687706 TTAGCCCCAA
Statistics
Matches: 196, Mismatches: 9, Indels: 17
0.88 0.04 0.08
Matches are distributed among these distances:
130 20 0.10
131 122 0.62
132 53 0.27
133 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (131 bp):
ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATGAA
ATTTAAGCCCAGTTTATCTGGCCTCAAATGAAGATTTAAGCCCAGTTCATCTGGCCATCAATGAG
T
Found at i:2688523 original size:23 final size:23
Alignment explanation
Indices: 2688493--2688559 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
2688483 CCCGATGTCA
*
2688493 ATTCTGTAAAACCTCCGGGCATG
1 ATTCTGTAAGACCTCCGGGCATG
* * *
2688516 ATTCTGTAAGACCTTCGAGCACG
1 ATTCTGTAAGACCTCCGGGCATG
*
2688539 ATT-TTTAAGACCTCCGGGCAT
1 ATTCTGTAAGACCTCCGGGCAT
2688560 AATTTCGATT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 14 0.39
23 22 0.61
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (23 bp):
ATTCTGTAAGACCTCCGGGCATG
Found at i:2688564 original size:22 final size:22
Alignment explanation
Indices: 2688497--2688564 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
2688487 ATGTCAATTC
*
2688497 TGTAAAACCTCCGGGCATGATT
1 TGTAAGACCTCCGGGCATGATT
* * *
2688519 CTGTAAGACCTTCGAGCACGATT
1 -TGTAAGACCTCCGGGCATGATT
* *
2688542 TTTAAGACCTCCGGGCATAATT
1 TGTAAGACCTCCGGGCATGATT
2688564 T
1 T
2688565 CGATTCACGA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
22 18 0.50
23 18 0.50
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (22 bp):
TGTAAGACCTCCGGGCATGATT
Found at i:2688658 original size:23 final size:22
Alignment explanation
Indices: 2688625--2688692 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 22
2688615 TATTCCAGTC
2688625 GATTCTGTAAGACCTCCGGGCAT
1 GATTCT-TAAGACCTCCGGGCAT
* *
2688648 GATTCTATAAGACCTCCAGGTAT
1 GATTCT-TAAGACCTCCGGGCAT
*
2688671 GATTCTTAAGACCTCCGAGCAT
1 GATTCTTAAGACCTCCGGGCAT
2688693 AATTTTGATT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
22 13 0.33
23 26 0.67
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (22 bp):
GATTCTTAAGACCTCCGGGCAT
Found at i:2688662 original size:133 final size:133
Alignment explanation
Indices: 2688493--2688769 Score: 378
Period size: 133 Copynumber: 2.1 Consensus size: 133
2688483 CCCGATGTCA
* * * * *
2688493 ATTCTGTAAAACCTCCGGGCATGATTCTGTAAGACCTTC-GAGCACGATTTTTAAGACCTCCGGG
1 ATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCCAG-GCACGATTCTTAAGACCTCCGAG
* *
2688557 CATAATTTCGATTCACGAT-GTTATCCCGATCGATTCCTTATCTTTCAACTTACAATTTTATTCC
65 CATAATTTCGATTCACG-TGGTTATCCCGATCGATTCCTTATCTTTCAACTTACAATGTTATCCC
2688621 AGTCG
129 AGTCG
* *
2688626 ATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCCAGGTATGATTCTTAAGACCTCCGAGC
1 ATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCCAGGCACGATTCTTAAGACCTCCGAGC
* * * ** *
2688691 ATAATTTTGATTCGCGTGGTTATCTCGATCGATTCCTTATCTTTTGACTTACGATGTTATCCCAG
66 ATAATTTCGATTCACGTGGTTATCCCGATCGATTCCTTATCTTTCAACTTACAATGTTATCCCAG
2688756 TCG
131 TCG
*
2688759 ATTTTGTAAGA
1 ATTCTGTAAGA
2688770 ACCTTCGACA
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
132 1 0.01
133 124 0.98
134 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.35
Consensus pattern (133 bp):
ATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCCAGGCACGATTCTTAAGACCTCCGAGC
ATAATTTCGATTCACGTGGTTATCCCGATCGATTCCTTATCTTTCAACTTACAATGTTATCCCAG
TCG
Found at i:2688887 original size:87 final size:88
Alignment explanation
Indices: 2688671--2688899 Score: 331
Period size: 87 Copynumber: 2.6 Consensus size: 88
2688661 CTCCAGGTAT
2688671 GATTCT-TAAGACCTCCGAGCATAATTTTGATTCGCGTG-GTTATCTCGATCGATTCCTTATCTT
1 GATTCTGTAAGACCTCCG-GCATAATTTTGATTCGCGTGTGTTATCTCGATCGATTCCTTATCTT
2688734 TTGACTTACGATGTTATCCCAGTC
65 TTGACTTACGATGTTATCCCAGTC
* * * * * *
2688758 GATTTTGTAAGAACCTTCGACATAATTTCGATTCGCG-GTGTTATCCCGATCGATTCTTTATCTT
1 GATTCTGTAAG-ACCTCCGGCATAATTTTGATTCGCGTGTGTTATCTCGATCGATTCCTTATCTT
*
2688822 TTGAC-TGCGATGTTATCCCAGTC
65 TTGACTTACGATGTTATCCCAGTC
* *
2688845 TATTCTGTAAGACCTCCGGCATAATTTTGATTCACGTGTGTTATCTCGATCGATT
1 GATTCTGTAAGACCTCCGGCATAATTTTGATTCGCGTGTGTTATCTCGATCGATT
2688900 TATTATTTTT
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
86 21 0.17
87 49 0.40
88 48 0.39
89 6 0.05
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39
Consensus pattern (88 bp):
GATTCTGTAAGACCTCCGGCATAATTTTGATTCGCGTGTGTTATCTCGATCGATTCCTTATCTTT
TGACTTACGATGTTATCCCAGTC
Found at i:2689115 original size:16 final size:14
Alignment explanation
Indices: 2689085--2689125 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 14
2689075 ATATTATACG
2689085 AAATACAAAAAAAT
1 AAATACAAAAAAAT
*
2689099 AAATAC-CAAAAAT
1 AAATACAAAAAAAT
2689112 -AATACAAAAAAAT
1 AAATACAAAAAAAT
2689125 A
1 A
2689126 GCAAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 5 0.22
13 12 0.52
14 6 0.26
ACGTcount: A:0.76, C:0.10, G:0.00, T:0.15
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:2691280 original size:26 final size:26
Alignment explanation
Indices: 2691250--2691302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2691240 CTTGACTTAG
*
2691250 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
2691276 GCATACGGAGTTCATACCCAGTGTAA
1 GCATACGGAGTTCATACCCAGTCTAA
2691302 G
1 G
2691303 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:2692556 original size:863 final size:857
Alignment explanation
Indices: 2690518--2695698 Score: 5891
Period size: 900 Copynumber: 5.9 Consensus size: 857
2690508 NNNNNNNNNN
* * * * *
2690518 CCTGACCGGCGGCATTAGGGTTCCGATGATT-GGGGACGGGGCGGTGTGCGCACATAATGGGCGA
1 CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGG-GGTGTGCGCACATGATGTGCGA
* *
2690582 CGGGTGCTGGTACATTGGCCCTTATATTGGCTTCCCCTAT-TCTCATCAAACCTCGAGAAACATC
65 TGGGTGCTGGTAC-TTGGCCCTTATATTGGC--CCCCTATCCCTCATCAAACCTCGAG-AAC-TC
* *
2690646 TACACCCCCTTCAAAGAGCATTTGAGATTTTTTTTTTTTTTACAGGTTTGCTGCCAGTCCGTCAT
125 -ACACCCCCTT-AAAGAGCATTTGAGA----------TTTTACAGGTTTGCTGCCAGT-AGCCAT
* * *
2690711 GAAA-TGTTTAGAAATGGGGACACTTTTTTCAAATGGTCAC-AAATTCTGTACACTTCGAGTTTT
177 TAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTT
* * * *
2690774 TAGTTGAATTGTTTTGTGCATGCCAAACAAAAATACAGGGATCACGTCTACCAAGTTT-GGGCCA
241 TAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
* * *
2690838 AAACTCCTTCTG-AAAAATTTAAAAAAAATCCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
305 AAACTCCTTCTGAAAAAATTTTAAAAAAAT-CT-GAACAGTAAAAAGTTTCAAAAATCATGAAAA
*
2690902 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
368 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* *
2690967 ACAAGCCATAAAAATGGCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
433 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
2691032 CTATCGTTCCACGGCTTGCGCATCCCGCCT-T-T------C----T----G---GCCAGC--GTT
498 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTAGTT
* * * * * * *
2691076 TCGTCGGTTGGCTTAGGCATACAGAGATCATTCCCAGTCTAAGATTGAACCAAACTGAGGGTTGT
563 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGATC-GAGGGTTGC
* ** * * * * * * *
2691141 GGTAGTAGGATCGACAGCATGCTGGGGGGA-CCTAGCCAAAT-CCCGGCTTGGGTATCCTGCCCC
627 GGTAGCAGGATCGGTAGCACGCAGGGGGGACCCGA-TC-GATCCCCGGCTTGTGCATCCTGCCCC
* * * * * *
2691204 TCCGG-TCGACTGAGTGCCCGCACGCTCGTTTCAT-GGCTTGACTTAGGCATACGGAGTTCATTC
690 TCTGGCT-GGCTAAGCGCCCGCACGCTCATTTCGTAGG-TTGACTTAGGCATACGGAGTTCATTC
2691267 CCAGTCTAAGCATACGGAGTTCATACCCAGTGTAAGATCAAACCAGACTGAGGGTTGCGGGTGCA
753 CCAGTCTAAG-AT-C--AG-----A-CC-------G---------GACTGAGGGTTGCGGGTGCA
** *
2691332 CATGCTGGGCTCAAGCATATGCTGGTGCCGTATTTTTTTTTCGCCTGGGGCACCATCGTCGGAGC
792 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTT-GCC-GGGGCACCA---TC--AGC
2691397 ATCGTTGAAGAA
850 -TCG--G-AGAA
* * *
2691409 CCTGACCTGCGGCATTGGGGTTTCGACGATTGGGGGGCGGGGGGTGTGTGCACATGATGTGCGAT
1 CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
2691474 GGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAAATCATACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
2691539 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
2691604 ACACGTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACA
196 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
2691669 TGCCAA-AAAAAGTACAAGGATCATGTCTACCATGTTTGGGACCAAAACTCCATCTGAAAAAAAT
261 TGCCAACAAAAA-TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAAT
* * ** *
2691733 TTT-AAAAAATCATGAACCGTAAAAAGATTGGAAAATCATAAAAAATAGAAAACGAGTCGTCTTG
324 TTTAAAAAAATC-TGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
2691797 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
388 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
2691862 TGGCATGGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACACCCTATCGATCCACGGCTTG
453 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTA-C-CACCCTATCGATCCACGGCTTG
* * *
2691927 CGCATCCCCCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTAGTTTCTTCGGTTGGCTTAGGC
516 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTAGTTTCGTCGGTTGGCTTAGGC
* * * *
2691992 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGTGGCAGCAGGATTGGCAGC
581 ATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GATCGAGGGTTGCGGTAGCAGGATCGGTAGC
* * * *
2692057 ACGCAGGGGGGGACTCGATCGATCCCCGACTTGTGCGTCCTGCCCCTCTGGCTGGCTAAGCGCCT
645 ACGCA-GGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTGGCTAAGCGCCC
*
2692122 GCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGA
709 GCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * **
2692187 CTGAGGGTTGTGAGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTGACCGG
774 CTGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTTG-CCGG
2692252 GGCACCATCA-C-CGGAGAA
838 GGCACCATCAGCTCGGAGAA
* * * * * *
2692270 CCTGACCAGCAGCATTGGGGTTTCAACGATTGAAGGGGCGGGGGGGTGTG-GACACATGATGTAC
1 CCTGACCGGCGGCATTGGGGTTCCGACGATTG-GGGGGC-GGGGGGTGTGCG-CACATGATGTGC
* *
2692334 GATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCTCTCATCAAACCTCGAGAACTCACA
63 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2692399 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
128 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2692464 GGGACAC-TTTTTCAAATGGTCACAAAATCCTATACACTTCAAAGTTTTTAGCTGAATTTTTTTG
193 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTG
* * * * *
2692528 TGGAAGCCAACAAAAATAGAACGATCATGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAA
257 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
2692593 ATTTTAAAAAAATCTCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCATCT
322 ATTTTAAAAAAATCT-GAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
2692658 TGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
386 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
2692723 ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
451 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
2692788 CGCATCCGGCCTCTCTGGCCGACGTGGTGCCCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGC
516 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTAGTTTCGTCGGTTGGCTTAGGC
* * * * * *
2692853 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACAAAGGGTTGTGGTAGTAGGATCGGTAGC
581 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGATC-GAGGGTTGCGGTAGCAGGATCGGTAGC
* * * *
2692918 ACGTAGGGGGGACCC-TTCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTGGTTGAGCGCCC
645 ACGCAGGGGGGACCCGAT-CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTGGCTAAGCGCCC
* ** *
2692982 GCACACTCATTTCGCGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
709 GCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG--
* * * * *
2693047 CATTCCCAGTGTAAGATCAGATCGGACCGAGGGTTACGGGTGCACAAGCTAGGCTCGGACATGCG
768 -A---CC---G---GA-C---T------GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
** * *
2693112 CTGGTGCCACATTTTTTTTCGCCTGGGGCACTATCGCCGGAGCATCACCGGAGAA
813 CTGGTGCCGTATTTTTTTTTGCC-GGGGCACCAT---C--AGC-T---CGGAGAA
* * ** * *
2693167 CCTGACCGGCAGCATTAGGGTTCCGGTGATTGGGGGGCGAGGGGTGTGCGCATATGATGTGCGAT
1 CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
2693232 GGGTGATGGCACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
2693297 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTAAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
2693362 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTGAGCTGAATGTTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
2693427 TGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACTCCTTCTAAAAAAATTT
261 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
*
2693491 TAAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
326 TAAAAAAATCT-GAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* ** *
2693556 ATGAAACTTCACATGAAGGCTTAAGGGACTATTGTACAAATTTACAAGCCATAAAAATAGCATTG
390 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * ** * * *
2693621 GTACGGCAAAAATATGAAGATACGCCTAAGCCCACCTACCACCCTATCGATCCATGGCTTACGCA
455 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * ** * *
2693686 TCCCGCCTCTCTGGCCGGCGTAATGCCCGCCCGTCCGCTTGTTTCGTTGACTGGGTTAGGCATAT
520 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTAGTTTCGTCGGTTGGCTTAGGCATAC
* * *
2693751 GGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGTAGCAGGATCGGTAGCACGC
585 GGAGTTCATTCCCAGTCTAAGATCGGACC-GATCGAGGGTTGCGGTAGCAGGATCGGTAGCACGC
* * * * * * * * *
2693816 TAGGGGAGACCCGATCGAACCCCGGCTTGGGCATCCTGCCCCTTTGGCCGACTAAGCACCCACAT
649 -AGGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTGGCTAAGCGCCCGCAC
* * *
2693881 GCTTATTTCGTAGGTTGACTTAGGCGTACGGAATTCATTCCCAGTCTAAGCATACTGAGTTCATT
713 GCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A--
* **
2693946 CCCAGTGTAAGATCGAACCAAACTGAGGGATATGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
769 -CC-------G---G------ACTGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* *
2694011 TGCCGTATTTCTTTTTCGCCCAGGGCACCATCGTCGGAGCATCGTCGGAGAA
817 TGCCGTATTT-TTTTTTG-CCGGGGCACCA---TC--AG---C-TCGGAGAA
*
2694063 CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTATGCGCACATGATGTGCG
1 CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGG-C-GGGGGGTGTGCGCACATGATGTGCG
2694128 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
64 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
2694193 CCCCTTAGAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
129 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
2694258 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTG
194 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * ** * *
2694323 AATGCCAAAAAAAAATACAAGGATC-TCGTCTACCTAGTTTGATGCCTAAACTCCTTTTGAAAAA
259 CATGCC-AACAAAAATACAAGGATCAT-GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
2694387 ATTTTAAAAAAATCTTGAACTGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
322 ATTTTAAAAAAATC-TGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
2694452 TGCCATGAAACTTCACATGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGC
386 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
2694517 ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
451 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
2694582 CGCATCCTGTCTCTCTAGCCGGCATAGTGGCTGCCCGCCTGCTCA-TTTCATCGGTTGGCTTAGG
516 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT-AGTTTCGTCGGTTGGCTTAGG
* *
2694646 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTGCGGTAGCAGGATCAGTA
580 CATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GATC-GAGGGTTGCGGTAGCAGGATCGGTA
** * * * * * * *
2694710 GCTTGCAGGAAGGGACTCGGTCGATCCCCGGCTTGTGCATTCTGCCCCTCTGGCCGGTTTAGCGC
643 GCACGCAGG-GGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTGGCTAAGCGC
** * * * * *
2694775 CCGCACGCTTTTTTCATGGGTTCACTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCAGACCA
707 CCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* *
2694840 GA-TCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTTTTTTTTTTTCGC
772 GACT-GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTT-G-
2694904 CCGGGGCACCATCACTGGAGCATCGTCGAAGAA
834 CCGGGGCACCAT--C---AGC-TCG--G-AGAA
* *
2694937 CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGTGAA
1 CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
2695002 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
2695067 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
2695132 ACACTTTTTTCAAATGGTCACAAAATCCTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* **
2695197 TGCCAAGAAAAATACAAGGATCACATCTA-CAAGTTTGGGGCCAAAACTCCTTCTG-AAAAATTT
261 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
*
2695260 TTAAAAAATCCTGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
326 TAAAAAAAT-CTGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
2695325 ATGAAACGTCACATGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCATTG
390 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* **
2695390 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCTGTATCGATCCACGGCTTGCGCA
455 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
** * * * * * *
2695455 TCCTTCATCTCTGGCCGACGTAGTGCCCGCCCGCTCGCTTGTTTCGTCAGATGGCTTAGGCATAC
520 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTAGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *** * *
2695520 GGAGTTCATTCCTATTCTAAGATTGGACCGTATCGAGGGTTACGGCAGCAGGATCAACAGTACGT
585 GGAGTTCATTCCCAGTCTAAGATCGGACCG-ATCGAGGGTTGCGGTAGCAGGATCGGTAGCACGC
* * * * * * *
2695585 AAGGGGGACCCGATCGATCCTCAGTTTGTGCATCTTGCCCCTCTGG-TCGGCTGAGCGCCCGTAC
649 AGGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCT-GGCTAAGCGCCCGCAC
* *
2695649 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
713 GCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
2695699 CATATGGAGT
Statistics
Matches: 3731, Mismatches: 427, Indels: 287
0.84 0.10 0.06
Matches are distributed among these distances:
859 1 0.00
860 102 0.03
861 171 0.05
862 52 0.01
863 369 0.10
864 9 0.00
866 1 0.00
867 2 0.00
868 94 0.03
869 292 0.08
870 25 0.01
871 26 0.01
872 226 0.06
873 71 0.02
874 164 0.04
875 232 0.06
876 11 0.00
877 41 0.01
878 1 0.00
879 1 0.00
880 2 0.00
882 1 0.00
885 18 0.00
886 68 0.02
887 2 0.00
888 9 0.00
889 20 0.01
890 19 0.01
891 59 0.02
892 10 0.00
893 2 0.00
894 312 0.08
895 358 0.10
896 105 0.03
897 37 0.01
898 289 0.08
899 125 0.03
900 400 0.11
901 2 0.00
904 1 0.00
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (857 bp):
CCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
TAAAAAAATCTGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTAGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCGATCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAG
GGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTGGCTAAGCGCCCGCACGCT
CATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
TTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTTGCCGGGGCACCAT
CAGCTCGGAGAA
Found at i:2693045 original size:26 final size:26
Alignment explanation
Indices: 2693009--2693061 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2692999 GTTAACTTAG
2693009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2693035 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2693061 G
1 G
2693062 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2695701 original size:26 final size:26
Alignment explanation
Indices: 2695672--2695724 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2695662 GTTGACTTAG
2695672 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2695698 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2695724 G
1 G
2695725 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2695960 original size:15 final size:15
Alignment explanation
Indices: 2695942--2695981 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
2695932 ATATTATACG
2695942 AAATACAAAAAAAAT
1 AAATACAAAAAAAAT
*
2695957 AAATAC-CAAAAAAT
1 AAATACAAAAAAAAT
2695971 -AATACAAAAAA
1 AAATACAAAAAA
2695982 TAGCAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 5 0.23
14 11 0.50
15 6 0.27
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (15 bp):
AAATACAAAAAAAAT
Found at i:2695978 original size:12 final size:13
Alignment explanation
Indices: 2695950--2695983 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
2695940 CGAAATACAA
2695950 AAAAAATAAATACC
1 AAAAAAT-AATACC
2695964 AAAAAATAATA-C
1 AAAAAATAATACC
2695976 AAAAAATA
1 AAAAAATA
2695984 GCAAAAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.45
13 4 0.20
14 7 0.35
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAATAATACC
Found at i:2696001 original size:22 final size:22
Alignment explanation
Indices: 2695948--2696001 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
2695938 TACGAAATAC
2695948 AAAAAAAATAAATACCAAAAAAT
1 AAAAAAAA-AAATACCAAAAAAT
* * *
2695971 AATACAAAAAATAGCAAAAAA-
1 AAAAAAAAAAATACCAAAAAAT
*
2695992 ACAAAAAAAA
1 AAAAAAAAAA
2696002 GAAAAATAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 7 0.28
22 12 0.48
23 6 0.24
ACGTcount: A:0.80, C:0.09, G:0.02, T:0.09
Consensus pattern (22 bp):
AAAAAAAAAAATACCAAAAAAT
Found at i:2702337 original size:16 final size:16
Alignment explanation
Indices: 2702318--2702349 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
2702308 AAAAACAAAC
2702318 AAAAAAAG-AGAAAAA
1 AAAAAAAGAAGAAAAA
2702333 AAAAAAAGAAGAAAAA
1 AAAAAAAGAAGAAAAA
2702349 A
1 A
2702350 TTGGTTATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAAGAAAAA
Found at i:2703693 original size:33 final size:33
Alignment explanation
Indices: 2703613--2703956 Score: 416
Period size: 33 Copynumber: 10.5 Consensus size: 33
2703603 ATAAAATAAA
*
2703613 ATTTAAGCCCAGTTTAT-TGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* *
2703645 TTTTAAGCCCAAGTTTATCTGGCCATCAATGAAA
1 ATTTAAGCCC-AGTTTATCTGGCCATCAATGAAG
2703679 ATTTAAGCCCAGTTTATCTGGCC-TCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATC-AATGAAG
* *
2703712 ATTTAAGCCCAGTTTATCTAGCCATCAATG-AT
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* *
2703744 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
*
2703777 CTTTAAGCCCAGTTTATCTGGCTC-TCAATGAA-
1 ATTTAAGCCCAGTTTATCTGGC-CATCAATGAAG
*
2703809 ACTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
1 A-TTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* * *
2703843 CTTTAAGCCCAGTTCATCTGGCCATCAATGAGG
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* * * *
2703876 CTTTAAACCTAGTTTATCTGG-CTTCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATC-AATGAAG
* *
2703909 ATTTAAGCCCAGTTTAGCTGGCCTTCAAT-AA-
1 ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
*
2703940 ATTTAAGCCAAGTTTAT
1 ATTTAAGCCCAGTTTAT
2703957 TTAGCCCCAA
Statistics
Matches: 270, Mismatches: 31, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
31 15 0.06
32 45 0.17
33 181 0.67
34 29 0.11
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (33 bp):
ATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
Found at i:2704910 original size:23 final size:22
Alignment explanation
Indices: 2704876--2704945 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 22
2704866 TTATTCCAGT
2704876 TGATTCTGTAAGACCTCCGGGCA
1 TGATTCT-TAAGACCTCCGGGCA
* * *
2704899 TGATTCTATAAGACCTTCAGGTA
1 TGATTCT-TAAGACCTCCGGGCA
*
2704922 TGATTCTTAAAGACCTCCGAGCA
1 TGATTCTT-AAGACCTCCGGGCA
2704945 T
1 T
2704946 AATTTTGATT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
22 1 0.03
23 37 0.97
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (22 bp):
TGATTCTTAAGACCTCCGGGCA
Found at i:2704911 original size:133 final size:132
Alignment explanation
Indices: 2704659--2705025 Score: 427
Period size: 134 Copynumber: 2.8 Consensus size: 132
2704649 AGATTTTGAG
* * * * *
2704659 ATTTGTAAGACCTCTAGGCATAATTTTGATTTGCAATGTTGTCCCGATCGATT-CTT-TATTTCT
1 ATTTTTAAGACCTCTGGGCATAATTTTGATTCG-AATGTTATCCCGATCGATTCCTTATCTTTC-
* *
2704722 GACTTACAATGTTA-CCCGAGTCAATTCTGTAAGACCTCCAGGCATGATTCTGTAAGACCTTC-G
64 GACTTACAATGTTATCCC-AGTCGATTCTGTAAGACCTCCAGGCATGATTCTATAAGACCTTCAG
2704785 AGCACA
128 -GCACA
* *
2704791 ATTTTTAAGACCTCTGGGCATAATTTCGATTCGTGATGTTATCCCGATCGATTCCTTATCTTTCG
1 ATTTTTAAGACCTCTGGGCATAATTTTGATTCG-AATGTTATCCCGATCGATTCCTTATCTTTCG
* * * * *
2704856 ACTTACAATTTTATTCCAGTTGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTTCAGGT
65 ACTTACAATGTTATCCCAGTCGATTCTGTAAGACCTCCAGGCATGATTCTATAAGACCTTCAGGC
**
2704921 ATG
130 ACA
* * * * * *
2704924 ATTCTTAAAGACCTCCGAGCATAATTTTGATTCGCAGTGTTATCTCGATCGATTCCTTATCTTTT
1 ATT-TTTAAGACCTCTGGGCATAATTTTGATTCG-AATGTTATCCCGATCGATTCCTTATCTTTC
* *
2704989 GACTTACGATGTTATCCCAGTCGATTTTGTAAGACCT
64 GACTTACAATGTTATCCCAGTCGATTCTGTAAGACCT
2705026 TCGAACATAA
Statistics
Matches: 199, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
132 46 0.23
133 61 0.31
134 92 0.46
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (132 bp):
ATTTTTAAGACCTCTGGGCATAATTTTGATTCGAATGTTATCCCGATCGATTCCTTATCTTTCGA
CTTACAATGTTATCCCAGTCGATTCTGTAAGACCTCCAGGCATGATTCTATAAGACCTTCAGGCA
CA
Found at i:2705080 original size:88 final size:87
Alignment explanation
Indices: 2704923--2705154 Score: 313
Period size: 88 Copynumber: 2.6 Consensus size: 87
2704913 CTTCAGGTAT
* *
2704923 GATTCT-TAAAGACCTCCGAGCATAATTTTGATTCGCAGTGTTATCTCGATCGATTCCTTATCTT
1 GATTCTGT-AAGACCTCCGAGCATAATTTTGATTCGCGGTGTTATCTCGATCGATTACTTATCTT
2704987 TTGACTTACGATGTTATCCCAGTC
65 TTGAC-TACGATGTTATCCCAGTC
* * * * * *
2705011 GATTTTGTAAGACCTTCGAACATAATTTCGATTCGCGGTGTTATCCCGATCGATTATTTATCTTT
1 GATTCTGTAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTATCTCGATCGATTACTTATCTTT
*
2705076 TGACTGCGATGTTATCCCAGTC
66 TGACTACGATGTTATCCCAGTC
* * *
2705098 TATTCTGTAAGACCTCCGGGCATAAATTTTGATTCACGTGTGTTATCTCGATCGATT
1 GATTCTGTAAGACCTCCGAGCAT-AATTTTGATTCGCG-GTGTTATCTCGATCGATT
2705155 TGTTATTTTT
Statistics
Matches: 124, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
87 35 0.28
88 71 0.57
89 18 0.15
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (87 bp):
GATTCTGTAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTATCTCGATCGATTACTTATCTTT
TGACTACGATGTTATCCCAGTC
Found at i:2706293 original size:17 final size:18
Alignment explanation
Indices: 2706255--2706321 Score: 52
Period size: 17 Copynumber: 3.9 Consensus size: 18
2706245 GTAAAAAGAT
*
2706255 TTTTTTTTA-ATTTTTTA
1 TTTTTTTTATATTTATTA
*
2706272 ATTTTTTTATA-TTATTA
1 TTTTTTTTATATTTATTA
* *
2706289 TTTTTGTTAT-TTTAAGTA
1 TTTTTTTTATATTT-ATTA
*
2706307 -TATTTTTATATTTAT
1 TTTTTTTTATATTTAT
2706322 GCATGATAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
17 31 0.82
18 7 0.18
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (18 bp):
TTTTTTTTATATTTATTA
Found at i:2706719 original size:17 final size:17
Alignment explanation
Indices: 2706699--2706763 Score: 71
Period size: 17 Copynumber: 3.9 Consensus size: 17
2706689 CTAAGTTTTT
2706699 AAAACCCCTAAAAATCC
1 AAAACCCCTAAAAATCC
*
2706716 AAAATCCCCT-AAAATTC
1 AAAA-CCCCTAAAAATCC
* *
2706733 AAAACCTCTTAAAATCC
1 AAAACCCCTAAAAATCC
*
2706750 AAAA-TCCTAAAAAT
1 AAAACCCCTAAAAAT
2706764 TCTAAAGTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
16 11 0.28
17 24 0.60
18 5 0.12
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.20
Consensus pattern (17 bp):
AAAACCCCTAAAAATCC
Found at i:2710746 original size:26 final size:26
Alignment explanation
Indices: 2710710--2710762 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2710700 GTTGACTTAG
*
2710710 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
2710736 GCATACGGAGTTCATTCCAAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
2710762 G
1 G
2710763 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:2711638 original size:885 final size:894
Alignment explanation
Indices: 2710022--2711638 Score: 2366
Period size: 885 Copynumber: 1.8 Consensus size: 894
2710012 AGGGTGTGCG
* *
2710022 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
1 CACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
2710087 TAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
66 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
2710152 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
131 GTGTCTAAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
2710217 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTC
195 GAATTTTTTTGTGCATGCC-ACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTC
* ** *
2710282 CTTTGGAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATTATGAAAAATAGAAA
259 CTTTGAAAAAAATTTTAAAAAAATCCAAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
2710347 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAGGCC
324 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
2710412 ATAAAAATGGCATTGGTATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAA
389 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAA
* * ** * * *
2710477 TCCATGGCTTGCGCATCCCGTCTCTCTGGTTGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTTGG
454 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGACCGCTCATTTCGTCGG
* * *
2710542 TTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATTGGACTAGACTGAGGCCTACGATAGTA
519 TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACTAGACTGAGGCCTACGATAGCA
** * * * *
2710607 CGATCAGCAGCATATAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCATGCCCCTCTGGCCG
584 CGATCAAAAGCACACAGAAGGGGACCCGATAGATCCCCGGCTTGCACATCATGCCCCTCTGGCCG
* * * * * *
2710672 GCTGAGCACCTGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
649 ACTGAGCACCTGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAG
2710737 CATACGGAGTTCATTCCAAGTGTAAGATCGAATCGAATCGAGGGTCGTGGGTGCACATGCTAGGC
714 CATACGGAGTTCATTCCAAGTGTAAGATCGAATCGAATCGAGGGTCGTGGGTGCACATGCTAGGC
2710802 TCGGGCATGTGCTAGTGCCACATTTTTTTCGCCCGGGGCACCATCGTCAGAGCATCGTCGGAGAA
779 TCGGGCATGTGCTAGTGCCACATTTTTTTCGCCCGGGGCACCATCGTCAGAGCATCGTCGGAGAA
2710867 CCTGATTGGTGGCATTGGGGGTTCCGACAATTGGGGCGCAGGGGGTGTAAC
844 CCTGATTGGTGGCATTGGGGGTTCCGACAATTGGGGCGCAGGGGGTGTAAC
2710918 CACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGG-CCCCTAT-CCTCATCAAACCT
1 CACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
2710981 CGAGAACTCAC-CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
66 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
2711045 GTGTCTGAAAT-GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT-TAG-TTTTAGCTG
131 GTGTCTAAAATGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
* *
2711107 AA-TTTTTTGTGCATG-C-CAAAAATACAGGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCT
196 AATTTTTTTGTGCATGCCACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCT
* *
2711168 TCTGAAAAAAATTTTAAAAAAATCTCAAAACCGTAAAAAGTTTC-AAAATCATGAACAATAGAAA
261 T-TGAAAAAAATTTTAAAAAAATC-CAAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
2711232 ACGAGTCGTCTTG-CATGAAACTT-A-GTGAAGGCTTAAGGGACCATTGTATGAAATTTACAAGC
324 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG-AATTTACAAGC
* *
2711294 CATAAAAATGGCATT-GCATGGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCG
388 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCA
* * *
2711358 ATCC-CGGCTTGCGCATCCCGCCTCTTTGGCCGGTGTA-TGCCCGCCC-ACCGCTCATTTCGTCG
453 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGACCGCTCATTTCGTCG
* * * **
2711420 GTTGGGCTTAGGCATAATGGAGTTCATTCCCAGTCCTAAGATTAGA-TCGGA-TCGAGGGTTACG
518 GTT-GGCTTAGGCAT-ACGGAGTTCATTCCCAAT-CTAAGATTAGACT-AGACT-GAGGCCTACG
* * ** * *
2711483 GTAGCA-GATCAAAAGCAACACAGAAGGGGA-CCGATAGCTCCTTGGCTT-C-TATCCTGCCGCC
578 ATAGCACGATCAAAAGC-ACACAGAAGGGGACCCGATAGATCCCCGGCTTGCACATCATGCC-CC
*
2711544 TCTGGCCGACTGAGCAACCTGC-CAACTCATTTCATGGGGTATTGACTTTTGGCATACAGAGTTC
641 TCTGGCCGACTGAGC-ACCTGCAC-ACTCATTTCAT-GGG--TTGAC-TTAGGCATACAGAGTTC
2711608 ATTCCAAGTCTAAGCATACGGAGTTCATTCC
700 ATTCCAAGTCTAAGCATACGGAGTTCATTCC
2711639 CAGTTGGGGG
Statistics
Matches: 646, Mismatches: 59, Indels: 43
0.86 0.08 0.06
Matches are distributed among these distances:
879 23 0.04
880 37 0.06
881 80 0.12
882 111 0.17
883 26 0.04
884 26 0.04
885 130 0.20
886 16 0.02
887 1 0.00
888 13 0.02
889 11 0.02
890 2 0.00
891 39 0.06
893 61 0.09
894 22 0.03
895 7 0.01
896 41 0.06
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (894 bp):
CACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTAAAATGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCT
TTGAAAAAAATTTTAAAAAAATCCAAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATC
CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGACCGCTCATTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACTAGACTGAGGCCTACGATAGCACG
ATCAAAAGCACACAGAAGGGGACCCGATAGATCCCCGGCTTGCACATCATGCCCCTCTGGCCGAC
TGAGCACCTGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCA
TACGGAGTTCATTCCAAGTGTAAGATCGAATCGAATCGAGGGTCGTGGGTGCACATGCTAGGCTC
GGGCATGTGCTAGTGCCACATTTTTTTCGCCCGGGGCACCATCGTCAGAGCATCGTCGGAGAACC
TGATTGGTGGCATTGGGGGTTCCGACAATTGGGGCGCAGGGGGTGTAAC
Found at i:2712448 original size:825 final size:807
Alignment explanation
Indices: 2710877--2712466 Score: 2025
Period size: 828 Copynumber: 1.9 Consensus size: 807
2710867 CCTGATTGGT
* *
2710877 GGCATTGGGGGTTCCGACAATTGGGGCGCAGGGGGTGTAACCACATGATGTGCGATGGGTGCTGG
1 GGCATTGGGGGTTCCGACAATTGGGGCGCAGGGGGTATAACCACATGATGTGCGATGGGTGCTAG
* *
2710942 CACTTGGCCCTTATATTGGCCCCTATCCTCATCAAACCTCGAGAACTCACCCCCTTTAAAGAGCA
66 CACTTGGCCCTTATATTGGCCCCTATCCTCATCAAACCTCAAGAACTCACCCCCTTAAAAGAGCA
*
2711007 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGACACTTTTTTCAAA
131 TTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGACACTTTTTTCAAA
* * * * *
2711072 TGGTCACAAAATCCTGTACACTTTAGTTTTAGCTGAATTTTTTGTGCATGCCAAAAATACAGGGA
196 TGGTCACAAAATCCTATACACTTTAGTTTTAGCTGAATTTTTTATGCATGCAAAAAATAAAAGGA
* *
2711137 TCACGTCTACCAAGTTTGGGGCAAAACTCCTTCTGAAAAAAATTTTAAAAAAATCTCAAAACCGT
261 TCACGTCTACCAAGTTTGGGGCAAAAATCCATCTGAAAAAAATTTTAAAAAAATCTCAAAACCGT
* * * *
2711202 AAAAAGTTTCAAAATCATGAACAATAGAAAACGAGTCGTCTTGCATGAAACTTAGTGAAGGCTTA
326 AAAAAGTTTCAAAATCATGAAAAACAGAAAACGAGTCGTCTCGCATGAAACTTAATGAAGGCTTA
* * *
2711267 AGGGACCATTGTATGAAATTTACAAGCCATAAAAATGGCATTGCATGGCAGAAATATGAAGATGT
391 ACGGACCATTGTATGAAATTTACAAGCCATAAAAATGGCATTGCAAGGCAAAAATATGAAGATGT
* ** **
2711332 GCTTAAACCCACCTACCACCCTATCGATCCCGGCTTGCGCATCCCGCCTCTTTGGCCGGTGTATG
456 GCCTAAACCCACCTACCACCCTATCGATCCCGGCTTGCGCATCCCGCCTCCCTGGCCGACGTATG
* *
2711397 CCCGCCCACCGCTCATTTCGTCGGTTGGGCTTAGGCATAATGGAGTTCATTCCCAGTCCTAAGAT
521 CCCGCCCACCACTCATTTCGTCGGTTGGGCTTAGGCATAACGGAGTTCATTCCCAGTCCTAAGAT
* * * * * **
2711462 TAGATCGGATCGAGGGTTACGGTAGCAGATCAAAAGCAACACAGAAGGGGACCGATAGCTCCTTG
586 TAGAACGGACCAAGGGTTACGGCAGCAGATCAAAAGCAACACAGAAGGGGACCGATAGATCCCCG
* * * *
2711527 GCTTCTATCCTGCCGCCTCTGGCCGACTGAGCAACCTGCCAACTCATTTCATGGGGTATTGACTT
651 ACTTCCATCCTGCCGCCTCTGGCCGACT--GCAACC-GCCAACTCATTTCATGGAG-ATTGACGT
* *
2711592 TTGGCATACAGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTTGGGGGCACCTCAC
712 TAGGCATACAGAGTGCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTTGGGGGCACCTCAC
2711657 CGGAGGCATCGTCGGCCAGAACCTAACCGGC
777 CGGAGGCATCGTCGGCCAGAACCTAACCGGC
* *
2711688 GGCATTGGGGGTTCCGACGATTGGGGGGCAGGGGG-AT-ACGCACATGATGTGCCGATGGGTGCT
1 GGCATTGGGGGTTCCGACAATTGGGGCGCAGGGGGTATAAC-CACATGATGTG-CGATGGGTGCT
* *
2711751 AGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCT-AAGAACTCACACCCCTTAAAA
64 AGCACTTGGCCCTTATATTGG-CCCCTAT-CCTCATCAAACCTCAAGAACTCAC-CCCCTTAAAA
*
2711815 GAGCATTTGCGATTTTAACAGGTTTCCCTGCCAGTAGCCATTAAAGTGTCCTGAAATGGGGACAC
126 GAGCATTTGAGATTTT-ACAGGTTT-CCTGCCAGTAGCCATTAAAGTGT-CTGAAAT--GGACAC
2711880 TTTTTTCAAAATGGTCCACAAAAT-CTATACACTTTCGAGTTTTAGCTGAATTTTTTTAATGCAT
186 TTTTTTC-AAATGGT-CACAAAATCCTATACACTTT--AGTTTTAGCTGAA-TTTTTT-ATGCAT
* *
2711944 GCAAAAAAAAATAAAAGGATCATGTCTATCAAG-TTGGGGCCAAAAATCCATCTG-AAAAAATTT
245 GC---AAAAAATAAAAGGATCACGTCTACCAAGTTTGGGG-CAAAAATCCATCTGAAAAAAATTT
* *
2712007 TAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAGCGAGTCGTCTCGC
306 TAAAAAAATCTCAAAACCGTAAAAAGTTTC-AAAATCATGAAAAACAGAAAACGAGTCGTCTCG-
**
2712071 CATGAAACTTCACATGAAGGCTTAACGGATGATTGTATG-AATTTACAAGCCATAAAAATGGCAT
369 CATGAAACTT-A-ATGAAGGCTTAACGGACCATTGTATGAAATTTACAAGCCATAAAAATGGCAT
*
2712135 TGGCAAGGCAAAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCG
432 T-GCAAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-CGGCTTGCG
* * * * * *
2712200 CATCCCGTCTCCCTGGCTGACGTAATGCTCGCCCGCCCACTCGTTTCGTTGGTT-GGCTTAGGCA
495 CATCCCGCCTCCCTGGCCGACGT-ATGCCCGCCC-ACCACTCATTTCGTCGGTTGGGCTTAGGCA
* ** * ****
2712264 T-ACGGAGTTCATTCCCAGT-CTATGATT-GAACTGGACCAAGGGTTGTGGCCGCAAGATTGGCA
558 TAACGGAGTTCATTCCCAGTCCTAAGATTAGAAC-GGACCAAGGGTTACGGCAGC-AGATCAAAA
* * *
2712326 GC-ACGCAGAGGGGGACCCGATCGATCCCCGACTTGCACATCCTGCC-CCTCTGGCCGACT-CAA
621 GCAACACAGAAGGGGA-CCGATAGATCCCCGACTT-C-CATCCTGCCGCCTCTGGCCGACTGCAA
2712388 -CGCCCACACCCTCATTTCAT-GAG-TTGA-GTTAGGCATAC-GAAGTGCATTCTC-AGTCTAAG
683 CCG-CCA-A--CTCATTTCATGGAGATTGACGTTAGGCATACAG-AGTGCATTC-CAAGTCTAAG
*
2712447 CATATGGAGTTCATTCCCAG
742 CATACGGAGTTCATTCCCAG
2712467 ACTGGACCGG
Statistics
Matches: 671, Mismatches: 69, Indels: 64
0.83 0.09 0.08
Matches are distributed among these distances:
809 2 0.00
810 12 0.02
811 62 0.09
812 16 0.02
813 37 0.06
814 8 0.01
815 22 0.03
816 7 0.01
818 13 0.02
819 17 0.03
820 8 0.01
821 13 0.02
822 6 0.01
823 7 0.01
824 17 0.03
825 101 0.15
826 54 0.08
827 34 0.05
828 105 0.16
829 73 0.11
830 34 0.05
831 23 0.03
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (807 bp):
GGCATTGGGGGTTCCGACAATTGGGGCGCAGGGGGTATAACCACATGATGTGCGATGGGTGCTAG
CACTTGGCCCTTATATTGGCCCCTATCCTCATCAAACCTCAAGAACTCACCCCCTTAAAAGAGCA
TTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGACACTTTTTTCAAA
TGGTCACAAAATCCTATACACTTTAGTTTTAGCTGAATTTTTTATGCATGCAAAAAATAAAAGGA
TCACGTCTACCAAGTTTGGGGCAAAAATCCATCTGAAAAAAATTTTAAAAAAATCTCAAAACCGT
AAAAAGTTTCAAAATCATGAAAAACAGAAAACGAGTCGTCTCGCATGAAACTTAATGAAGGCTTA
ACGGACCATTGTATGAAATTTACAAGCCATAAAAATGGCATTGCAAGGCAAAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCCGGCTTGCGCATCCCGCCTCCCTGGCCGACGTATG
CCCGCCCACCACTCATTTCGTCGGTTGGGCTTAGGCATAACGGAGTTCATTCCCAGTCCTAAGAT
TAGAACGGACCAAGGGTTACGGCAGCAGATCAAAAGCAACACAGAAGGGGACCGATAGATCCCCG
ACTTCCATCCTGCCGCCTCTGGCCGACTGCAACCGCCAACTCATTTCATGGAGATTGACGTTAGG
CATACAGAGTGCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTTGGGGGCACCTCACCGGA
GGCATCGTCGGCCAGAACCTAACCGGC
Found at i:2712942 original size:26 final size:26
Alignment explanation
Indices: 2712890--2712942 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2712880 GTTGACTTAG
* *
2712890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
*
2712916 GCATACAGAGTTCATTCCCACTGTAA
1 GCATACAGAGTTCATTCCCACTCTAA
2712942 G
1 G
2712943 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCACTCTAA
Found at i:2713839 original size:26 final size:26
Alignment explanation
Indices: 2713787--2713839 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2713777 GTTGACTTAG
*
2713787 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGGCTAA
*
2713813 GCATACGGAGTTCATTCCC-GGCATAA
1 GCATACAGAGTTCATTCCCAGGC-TAA
2713839 G
1 G
2713840 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGGCTAA
Found at i:2714614 original size:909 final size:889
Alignment explanation
Indices: 2712855--2715157 Score: 2918
Period size: 909 Copynumber: 2.6 Consensus size: 889
2712845 CTGGCCAGCT
*
2712855 GAGCGCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCAT
* * * * * *
2712920 ACAGAGTTCATTCCC-ACTGTAAGATCAGATCGGACCGAGGCTTACGGTTGCACATACTGGGCTT
65 ACAGAGTTCATTCCCGGC--TAAGATCAGATCGGA-CGAGGGTTGCGGGTGCACATGCTGGGCTC
* * *
2712984 GGGCATTTGCTGGTGCCGCATTTTTTTTCGCCC-AGGGAACCATCGCCGGAGCCTCATCGGAGAA
127 GGCCATATGCTGGTGCCGCATTTTTTTTC-CCCTA-GGAACCATCGCCGGAGCATCATCGGAGAA
* * * * *
2713048 CCTAATCGGCGGCATTGGGGGTTTTGATGATTGGGGGGCGGGGGGTGTGCGCACATGATGTACGA
190 CCTGACCGGCGGCATTGGGGGTTTCGACGATTGGGGGGC--GGGGTGTGCGCACATGATGTGCGA
* * *
2713113 TGGG-AGCTGGTACTTGGCCGTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACAC
253 TGGGTA-CTGGTACTTGGCC-TTATATTGG-CCCCTATCCCTCATCAAATCTCAAGAACTCACAC
* * * *
2713177 CCCCTTAAAGAGCATTTGAGATTTTACAGGATTACTACCAGTAGCCATTAAAGTGTATGAAATGG
315 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
2713242 GGACACTTTTTTCAAATGGTCAACAAATCCTGTATAT-TTCGAGTTTTTAGCTGAATTGTTTTCT
380 GGACACTTTTTTCAAATGGTC-ACAAATCCTGTACATCTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
2713306 GCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAA
444 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * *
2713371 TTTTAAAAAAATCCCGAACCGTAAAAAGTTTCCAAAATCTTGAAAAATAGAAAATGAGTCGTCTT
509 TTTTAAAAAAATCCCAAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCTT
*
2713436 GCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
574 GCCATGAAACTTCACATGAAGGCCTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
2713501 TTGGCAAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGC
639 TTGGCAAGACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
* * *
2713566 GCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCA
704 ACATCCCGCCTCTCTGGCTGACGTAGTGCCCGCCCACACGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * * * *
2713631 TACGAAGTTCATTCCCTGTCTAAGATCAGACCAAATTGAGGGTTGCGGTAGTAGGATTGGCAGCA
769 TACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * * *
2713696 GGAAGAGGGGGACC-CGATTGATCCTCAGCTTGCAG-ATCCTACCCGTCTAGCCGACA
834 CGAAGAGGGGGACCAAG-CTGATCCTCAGCTTGC-GCATCCTACCCCTCTAGCCGACA
* *
2713752 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCAT
* * * *
2713817 ACGGAGTTCATTCCCGGCATAAGATCGGATCAGATCGAGGGTTGTGGGTGCACATGCTGGGCTCG
65 ACAGAGTTCATTCCCGGC-TAAGATCAGATCGGA-CGAGGGTTGCGGGTGCACATGCTGGGCTCG
** * * * * *
2713882 ATCATGTGCCGGTGCTGCATTTTTTTTCACCCTAGGCACCATCGTCGGAGCATCATCGGAGAACC
128 GCCATATGCTGGTGCCGCATTTTTTTTC-CCCTAGGAACCATCGCCGGAGCATCATCGGAGAACC
* * *
2713947 TGACCGGCAGCATTGGGTGTTTCGGCGATTGGGGGGGCAGGGGAATGTGGCGCACATGATGTTGC
192 TGACCGGCGGCATTGGGGGTTTCGACGATT-GGGGGGC-GGGG--TGT-GCGCACATGATG-TGC
*
2714012 GATGGGTACTGGTTA-TTGGCCTTATATTGGCCCCATATCCCTCATCAAATGTCAAGAACTCACA
251 GATGGGTACTGG-TACTTGGCCTTATATTGGCCCC-TATCCCTCATCAAATCTCAAGAACTCACA
**
2714076 ATCCC-TAAAGAGCATTTGAAGATTTTAACAGGTTTGCTTGCCAGTAGCCATTAAAAGTGTCTGA
314 CCCCCTTAAAGAGCATTTG-AGATTTT-ACAGGTTTGC-TGCCAGTAGCCATT-AAAGTGTCTGA
* *
2714140 AATGGGGACACTTTCTTCAAATGGTTTCACAAATCCCTGTACACTTCCCTTCGA-TTTTTTGCTG
375 AATGGGGACACTTTTTTCAAATGG--TCACAAAT-CCTGTACA--T--CTTCGAGTTTTTAGCTG
*
2714204 AATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGATTTTGGGGCCAAAATT
433 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG--TTTGGGGCCAAAACT
* *
2714268 CCTTCTGAAAAAA-TTTAAAAAAATCCCAAACGGTAATAAGTTTCCAAAATCGTGAAAAATAGAA
496 CCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAA
* *
2714332 AACGAGTCATCTTGCCATGAAACTTCACATGAAGGCCTAAGGGACCATTGTATGAATTTAGAAGC
561 AACGAGTCATCTTGCCATGAAACTTCACATGAAGGCCTAAAGGACCATTGTATGAATTTACAAGC
** *
2714397 CATAAAAATGGCATTGGCACTACAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCG
626 CATAAAAATGGCATTGGCAAGACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
2714462 ATCCACGACTTGCACATCCCGCCTCTTTGGCT-AGTGTAGTGCCTGCCCGCACGGTCGTTTCGTC
691 ATCCACGACTTGCACATCCCGCCTCTCTGGCTGA-CGTAGTGCCCGCCCACACGCTCGTTTCGTC
**
2714526 GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
755 GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAG
* * * * *
2714591 CAGGATCGACATCACGTAGAGGGGGACCAAGCTGATCCTCGGCTTGCGCATCCTGCCCCTCTGGC
820 CAGGATCGACAGCACGAAGAGGGGGACCAAGCTGATCCTCAGCTTGCGCATCCTACCCCTCTAGC
* *
2714656 CGGCT
885 CGACA
** * * * *
2714661 GAGCGCCTACATGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAATCTAGGCAT
1 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCAT
* * * * *
2714726 ACAAAGTTCGTTCTCAGTGC-AAGATCAGACCGGACTGAGCGTTGCGGGTGCACATGCTGGGCTC
65 ACAGAGTTCATTC-CCG-GCTAAGATCAGATCGGAC-GAGGGTTGCGGGTGCACATGCTGGGCTC
* * * * * * ** * *
2714790 GGCCATATGCTGGTGCCGAATTTCTTTTCGCCTGGGGTACCATCACCAAAGCATCGTCGAAGAAC
127 GGCCATATGCTGGTGCCGCATTTTTTTTCCCCT-AGGAACCATCGCCGGAGCATCATCGGAGAAC
* * * * * *
2714855 CTGACTGACGGCATTGGGGGTTCCGACGATT---GGG-GGGGTGTCCACACATGATGTGCAATGG
191 CTGACCGGCGGCATTGGGGGTTTCGACGATTGGGGGGCGGGGTGTGCGCACATGATGTGCGATGG
* *
2714916 GTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTTATCAAATCTCAAGAACTCAC-CCCCCT
256 GTACTGGTACTTGG-CCTTATATTGGCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCT
2714980 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
320 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
2715045 CTTTTTTCAAAATGGTCACAAATCC-ATACA-CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
385 CTTTTTTC-AAATGGTCACAAATCCTGTACATCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
2715108 CCAAGAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCTAAAACTCCT
449 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
2715158 AGTCTAAGCA
Statistics
Matches: 1220, Mismatches: 148, Indels: 86
0.84 0.10 0.06
Matches are distributed among these distances:
887 22 0.02
888 29 0.02
889 26 0.02
892 4 0.00
893 2 0.00
894 8 0.01
895 28 0.02
896 20 0.02
897 203 0.17
898 21 0.02
899 76 0.06
900 81 0.07
901 29 0.02
902 16 0.01
903 37 0.03
904 6 0.00
905 12 0.01
907 1 0.00
908 34 0.03
909 529 0.43
910 34 0.03
911 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATA
CAGAGTTCATTCCCGGCTAAGATCAGATCGGACGAGGGTTGCGGGTGCACATGCTGGGCTCGGCC
ATATGCTGGTGCCGCATTTTTTTTCCCCTAGGAACCATCGCCGGAGCATCATCGGAGAACCTGAC
CGGCGGCATTGGGGGTTTCGACGATTGGGGGGCGGGGTGTGCGCACATGATGTGCGATGGGTACT
GGTACTTGGCCTTATATTGGCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAATCCTGTACATCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
CCCAAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
CACATGAAGGCCTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGACAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCACATCCCGCCTC
TCTGGCTGACGTAGTGCCCGCCCACACGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
TCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGAAGAGGGGGA
CCAAGCTGATCCTCAGCTTGCGCATCCTACCCCTCTAGCCGACA
Found at i:2716771 original size:26 final size:26
Alignment explanation
Indices: 2716735--2716787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2716725 GTTGACTTAG
2716735 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATATGGAGTTCATTCCCAGTGTAA
* *
2716761 GCATATGGAGTTCATTGCTAGTGTAA
1 GCATATGGAGTTCATTCCCAGTGTAA
2716787 G
1 G
2716788 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTGTAA
Found at i:2716788 original size:708 final size:701
Alignment explanation
Indices: 2715437--2716851 Score: 1839
Period size: 708 Copynumber: 2.0 Consensus size: 701
2715427 CCCTTAAAGA
*
2715437 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTT
* * * *
2715502 TCAAATGGTCATAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGGCAACAA
66 TCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCAAGCCAACAA
* * * *
2715567 AAATGCAAAGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAATTTTTTAAAAAAT
131 AAATACAAAGATCACATCTACCAAGTTTGGAGCCAAAACTCCTTCCCAAAAAATTTTAAAAAAAT
* *
2715632 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAACAAGTCATCTTGCCATGAAACTTCACATGAAG
196 CCCGAACCCTAAAAAGTTTCAAAAATCGTGAAACAAGTCATCTTGCCATGAAACTTCACATGAAG
2715697 GCTTAAGGGAGCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAA
261 GCTTAAGGGAGCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAA
*
2715762 GATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTACGCAACCCGTCTCTCTGGCTGG
326 GATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTACGCAACCCGCCTCTCTGGCTGG
** *
2715827 CGTAGTGCCTGCCCGTCCACTCGGTTCGTCGATTGGCTTAGGCATACTGAGTTCATTCCCAGTCT
391 CGTAGTGCCTGCCCACCCACTCGGTTCGTCGATTAGCTTAGGCATACTGAGTTCATTCCCAGTCT
* * * * * * *
2715892 AAGATCAGATCAGACTGAGGGTTGTAGTAGTAGGTTCGGCAGCATGTAAAGGGGGACCCGATCGA
456 AAGATCAGACCAAACTGAGGGTTGTAGCAGCAGGTTCGGCAGCATGCAAAGGGGGACCCGACCAA
* * * * *
2715957 TCCCCGACTTACACATCTTGCCCCTCTGGTCGGCTGAGCGCCGACACATTTGTTTTGTAGGTTGA
521 TCCCCGACTTACACATCCTGCCCCTCTGGCCGGCTGAGCGCCGACACACTCGTTTCGTAGGTTGA
*
2716022 CTTAGGCATATAGAGTTCATTCCTAATCTAAGCATACGAAGTTCATTCCCAATGTAAGATC-AGA
586 CTTAGGCATATAGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAATGTAAGATCGA-A
* * *
2716086 TTGGA-CTGAGGGTTACTGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCC
650 CTGGATC-GAGGGTTACGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCC
* *
2716138 GCATTTGAGATTTTACAGGTTCGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTT
* *
2716203 TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAA
66 TCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCAAGCCAACAA
* ** * * **
2716267 AAATACAAGGATCATGTCTACCAAGTTTGGATCCAAAACTCTTTCTGAAAAAATTTTAAAAAAAT
131 AAATACAAAGATCACATCTACCAAGTTTGGAGCCAAAACTCCTTCCCAAAAAATTTTAAAAAAAT
* **
2716332 CCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCATCTTGCCATGAAGTTT
196 CCCGAACCCTAAAAAGTTTCAAAAATC--G-----T-GA-AACAAGTCATCTTGCCATGAAACTT
* * * * *
2716397 CACATTAAGGCTTAAGGGA-CTGCTGTATGAATTTACAGGCCATAAAAATGGCTTTGGCATGGTA
252 CACATGAAGGCTTAAGGGAGC-ACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* * * * * *
2716461 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACG-GTTGCGCATCCCGCCT
316 AAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTACGCAACCCGCCT
* * * *
2716525 CTCTGG-TCGGTGTAGTGTCC-GCCCACCCACTCGTTTCGTTGGTTAGCTTAGGCATAC-GAAGT
381 CTCTGGCT-GGCGTAGTG-CCTGCCCACCCACTCGGTTCGTCGATTAGCTTAGGCATACTG-AGT
* * * *
2716587 TCATTCCTAGTGTAAGATCAGACCAAA-TCGAGGGTTGTAGCAGCAGGATT-GGTAGCATGCAGA
443 TCATTCCCAGTCTAAGATCAGACCAAACT-GAGGGTTGTAGCAGCAGG-TTCGGCAGCATGCAAA
* * * *
2716650 GGGGGACCTGACCAATCCCC-AGCTTGCTCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG-CACG
506 GGGGGACCCGACCAATCCCCGA-CTTACACATCCTGCCCCTCTGGCCGGCTGAGCG-CCGACACA
* * * * *
2716713 CTCGTTTCGTTA-GTTGACTTAGGCATATGGAGTTCATTCCCAGTGTAAGCATATGGAGTTCATT
569 CTCGTTTCG-TAGGTTGACTTAGGCATATAGAGTTCATTCCCAATCTAAGCATACGAAGTTCATT
* * * * * *
2716777 GCTAGTGTAAGATCGAACTGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTTCTGG
633 CCCAATGTAAGATCGAACTGGATCGAGGGTTACGGGTGCACATGCTAGGCTCGAGCATGTGCTGG
2716842 TGCC
698 TGCC
*
2716846 CCATTT
1 GCATTT
2716852 TTTTTCACCC
Statistics
Matches: 614, Mismatches: 80, Indels: 33
0.84 0.11 0.05
Matches are distributed among these distances:
700 96 0.16
701 103 0.17
702 1 0.00
707 5 0.01
708 274 0.45
709 135 0.22
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (701 bp):
GCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTT
TCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCAAGCCAACAA
AAATACAAAGATCACATCTACCAAGTTTGGAGCCAAAACTCCTTCCCAAAAAATTTTAAAAAAAT
CCCGAACCCTAAAAAGTTTCAAAAATCGTGAAACAAGTCATCTTGCCATGAAACTTCACATGAAG
GCTTAAGGGAGCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAA
GATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTACGCAACCCGCCTCTCTGGCTGG
CGTAGTGCCTGCCCACCCACTCGGTTCGTCGATTAGCTTAGGCATACTGAGTTCATTCCCAGTCT
AAGATCAGACCAAACTGAGGGTTGTAGCAGCAGGTTCGGCAGCATGCAAAGGGGGACCCGACCAA
TCCCCGACTTACACATCCTGCCCCTCTGGCCGGCTGAGCGCCGACACACTCGTTTCGTAGGTTGA
CTTAGGCATATAGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAATGTAAGATCGAAC
TGGATCGAGGGTTACGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCC
Found at i:2717675 original size:26 final size:26
Alignment explanation
Indices: 2717639--2717715 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
2717629 TGACTTAGGG
* *
2717639 ATACGAAGTTCATTCGCTGTCTAAGC
1 ATACGGAGTTCATTCGCAGTCTAAGC
2717665 ATACGGAGTTCATTCGCAGTCTAAGC
1 ATACGGAGTTCATTCGCAGTCTAAGC
* *
2717691 ATACGGAGTTTATTCGCAGTGTAAG
1 ATACGGAGTTCATTCGCAGTCTAAG
2717716 ATCGGATCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCGCAGTCTAAGC
Found at i:2718593 original size:26 final size:26
Alignment explanation
Indices: 2718563--2718615 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2718553 GTTGACTTAG
2718563 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2718589 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2718615 G
1 G
2718616 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2718990 original size:900 final size:896
Alignment explanation
Indices: 2716138--2721103 Score: 6238
Period size: 900 Copynumber: 5.5 Consensus size: 896
2716128 TGCTGGTGCC
* *
2716138 GCATTTGAGATTTTACAGGTTCGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
2716203 TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAA
66 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* ** *
2716267 AAATACAAGGATCATGTCTACCAAGTTTGGATCCAAAACTCTTTCTGAAAAAATTTTAAAAAAAT
131 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
* * * **
2716332 CCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCATCTTGCCATGAAGTTT
196 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *** * *
2716397 CACATTAAGGCTTAAGGGACTGCTGTATGAATTTACAGGCCATAAAAATGGCTTTGGCATGGTAG
261 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAG
*
2716462 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGG-TTGCGCATCCCGCCTC
326 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* ** * * * * *
2716526 TCTGGTCGGTGTAGTGTCCGCCCACCCACTCGTTTCGTTGGTTAGCTTAGGCATACGAAGTTCAT
391 TCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
* * * ** *
2716591 TCCTAGTGTAAGATCAGACCAAATCGAGGGTTGTAGCAGCAGGATTGGTAGCATGCAGAGGGGGA
456 TCCCAGTCTAAGATCAGACCAAAT-GAGGGTTGTAGAAGCAGGATTAATAGCACGCAGAGGGGGA
* * *
2716656 CCTGACCAATCCCCAGCTTGCTCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
520 CCTG-CCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTC
** * * * * *
2716721 GTTAGTTGACTTAGGCATATGGAGTTCATTCCCAGTGTAAGCATATGGAGTTCATTGCTAGTGTA
584 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTA
* * * * *
2716786 AGATCGAACTGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTTCTGGTGCCCCATT
649 AGATCGAACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATT
* * *
2716851 TTTTTTCACCCGGGGCACTATC-GCTGGAGCATC-CCTGGAGAACCTGATCGGCGGCATTAGGGG
714 TTTTTTC-GCCGGGGCACCATCAGC-GGAGCATCACC-GGAGAACCTGACCGGCGGCATT-GGGG
* * * * *
2716914 TTCCGGCGATTGGGGCGGTGAGGGGGGGCTGTGCGCACATGATCTATGATGGGTGTTGGTACTTG
775 TTCCAGCGATTGGGG-GG-GGGGGGGGGGTGTGCGCACATGATCTGTGATGGGTGCTGGTACTTG
*
2716979 GGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
838 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
2717038 GCATTTGAGATTTTACAAGTTTGCGGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
2717103 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCACAA
66 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * * *
2717168 AAATACAGGGATCCCGTCTACCATGTCTGGGGCCAAAAATCCTTCTGAAAAAATTTAAAAAAAAT
131 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
* *
2717233 CCTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
196 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
2717298 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGGCAG
261 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAG
** * *
2717363 AAATATGAAGATGTGTTTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTC
326 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
** * *
2717428 TCTGGCCGGTGTAGTGCCCGCCCGCCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
391 TCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
* * ** * *
2717493 TCCCAGTCTAAGATCAGACCGAACTGAGGGTTATAGCGGCAGGATGTGA-AGCACGTAGAGGGGG
456 TCCCAGTCTAAGATCAGACC-AAATGAGGGTTGTAGAAGCAGGAT-TAATAGCACGCAGAGGGGG
* * * * * * *
2717557 ACCCGATCGATCCCCGACTTGCCCATCCTGCCCCTCTAGCAGGTTGAGCGCCCGCACGCTCGTTT
519 ACCTG-CCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTT
* * * * * *
2717622 CGTGGGTTGACTTAGGGATACGAAGTTCATTCGCTGTCTAAGCATACGGAGTTCATTCGCAGTCT
583 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGT
2717687 AAGCATACGGAGTTTATTCGCAGTGTAAGATCGGATCAGACTGAGGGTTGCGGGTGCACATGCTG
648 AAG-AT-C-GA----A--C-C---G---GA-C----C--A---AGGGTTGCGGGTGCACATGCTG
* * *
2717752 GGCTC-AGGCATGTGCTGGTGCCACACTGTTTTTTCGCTCGGGGCACCATCACCGGAGCATCGCC
687 GGCTCGA-GCATGTGCTGGTGCCACA-TTTTTTTTCGC-CGGGGCACCATCAGCGGAGCATCACC
* * * *
2717816 GGAGAACCTGACCGACGGCATTGGGGGTTCC-GATGATT-GGGGGGTGGGTGGGGTGTGCGCACA
749 GGAGAACCTGACCGGCGGCATT-GGGGTTCCAG-CGATTGGGGGGGGGGGGGGGGTGTGCGCACA
*
2717879 TGATCTGTGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
812 TGATCTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
2717944 AACTCACACCCCCTTAAAGA
877 AACTCACACCCCCTTAAAGA
*
2717964 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
2718029 GCAAATGGTCACAAAATCCTGTACTCTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
2718094 AAATACAAGGATCACGTCTACCAGGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTTAAAAAAT
131 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
* * * * *
2718159 CCCGAACCCTAAAAAGCTTT-GAAAATCATGAAAAATAGAAAACGAGTAGTCTTACCATGAAACT
196 CCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
2718223 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAATAATGGCATTGGCATGGCA
260 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTA
2718288 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
325 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* * *
2718353 CTCTGGCCGACGTAATGCCCGCCCGCCCGCTCATTTGGTCGGTTGGCTTAGGCATACGAAGTTCA
390 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCA
* * * * * * * *
2718418 TTCCCAGTCTACGATCGGACCAAATAGAGGGTTGTGGAAGCATGATCAATAGCGCACAGAGGGGT
455 TTCCCAGTCTAAGATCAGACCAAAT-GAGGGTTGTAGAAGCAGGATTAATAGCACGCAGAGGGGG
*
2718483 ACCTTGCCAATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTT
519 ACC-TGCCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTT
*
2718548 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGT
583 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGT
* *
2718613 AAGATCGGACCGGACCAAGGGTTGCGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACAT
648 AAGATCGAACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAT
* ** ** * * *
2718678 TTTTTTTCGCTCGCGGTGCCATCTTCGGAGCATCGCCGGAGAACCTGATCGGCAGCATTGGGGTT
713 TTTTTTTCGC-CGGGGCACCATCAGCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * *
2718743 CCAGCGATTGGGGGGGCGGGGGGGGGTGTGCGCACAAGATGTGCGATGGGTTCTGGTACTTGGCC
777 CCAGCGATTGGGGGGG-GGGGGGGGGTGTGCGCACATGATCTGTGATGGGTGCTGGTACTTGGCC
* *
2718808 CTTATATTGGACCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGA
841 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
2718864 GTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
2718929 TCAATTGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
66 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
2718994 AAATACGAGGATCA-GATCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAA
131 AAATACAAGGATCACG-TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* *
2719058 TCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
195 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
2719123 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTA
260 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTA
* *
2719188 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
325 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* * * * * *
2719253 CTCTGGCTGACGTAGTGTCTGCACGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCA
390 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCA
** * ** * * *
2719318 TTCAGAGTCTAAGATCAGACCAAACTGAGGGTTGCCA-CTGTAGGATTAGTAGCACGTATG-GGG
455 TTCCCAGTCTAAGATCAGACCAAA-TGAGGGTTG-TAGAAGCAGGATTAATAGCACGCA-GAGGG
* ** * * * * * * *
2719381 GGACTCGGCTGATCCCCTGCTTGTGCATCCTGCCCTTCTGGCCGGCTAAGCGCCCACACGCTCAT
517 GGAC-CTGCCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGT
* * * * *
2719446 TTCGTGGGTTGACTTAGGCATATGGAGTGCATTCCCAATATAAGCATACAGAGTTCATTCCCAGT
581 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * **
2719511 GTAAGATCGAACCAGACCAAGGGTTACAGGTGCACATGTTGGGCTCGGGCATGTGCTGGTGTCGT
646 GTAAGATCGAACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCAC
* * * *
2719576 ATTTTTTTTCACCTGGGGCACCATCCGCCGAGCCATCACCGGAGAAACCTGACCGGCAGCCATTG
711 ATTTTTTTTCGCC-GGGGCACCATCAGCGGAG-CATCACCGGAG-AACCTGACCGGC-GGCATTG
***
2719641 AGGGTTCCAGCGATTGGGGGGGAAAGGGGGGTGGTGCGCACATGGAATCTGTGACTGGGTGCTGG
772 -GGGTTCCAGCGATTGGGGGGGGGGGGGGGGT-GTGCGCACAT-G-ATCTGTGA-TGGGTGCTGG
*
2719706 TACTTGGCCCTTATATTGGCCTTCC-AT-CCTCATCAAAACCTCGAGAACTCAC-CACCCCTTAA
832 TACTTGGCCCTTATATTGGCC-CCCTATCCCTCATC-AAACCTCGAGAACTCACAC-CCCCTTAA
*
2719768 AAA
894 AGA
* *
2719771 GCATTTGAGAATTTTACAGCGTTTGCCT-CCAGTAGCC-TTAAAGTGTGTGAAATGGGAGACATT
1 GCATTTGAG-ATTTTACAG-GTTTG-CTGCCAGTAGCCATTAAAGTGTCTGAAATGGG-GACACT
*
2719834 TTTTTC-AATGGTTAACAAAATCCTGTAC-CTTCGAGTTTTTAGCTGAATTACTTTTTG-GCATG
62 TTTTTCAAATGG-TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT--TTTTTGTGCATG
* *
2719896 CCAAC-AAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCTGAAAAAATGTTA
124 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
** * *
2719960 AAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAAAAAACGAGTCGTCTTGCCAT
189 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
** *
2720025 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGC
254 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
2720090 ATGGTAGCAATATGAAGATGTGCCTAAACCCACCTACCAACCTATAGATCCACGGCTTGCACATC
319 ATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * ** *
2720155 CCGCCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCATTTTATCGGTTGGCTTAGGTATAC-A
384 CCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA
* * * * * * * *
2720219 GAGTTCATTCCAAGTC-----T-A-A--AATTGAGGGTTGTGGTAGCAGGATCAAAAGAACACAT
449 -AGTTCATTCCCAGTCTAAGATCAGACCAAATGAGGGTTGTAGAAGCAGGATTAATAGCACGCA-
* * * * * *
2720275 G-GGGGCACCCGGTCGATCCCCGGCTTGTGCATCTTG-CCC-CT---C---T-------------
512 GAGGGGGA-CCTGCCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACG
* * * * *
2720318 -T--TTT-GTGGGATGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTG
576 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *** *
2720379 CTAGTGTAAGATCAAACCAGATTGAGGGTTACGGGTGCACATGCTGGGCTC-AGGCATGTGCTGG
641 CCAGTGTAAGATCGAACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGA-GCATGTGCTGG
* * *
2720443 TGCCGCATTTTTTTTCGCCCGGGGCACCATCATCGGAACATCACCGGAGAACCTGACCGGCGGCA
705 TGCCACATTTTTTTTCG-CCGGGGCACCATCAGCGGAGCATCACCGGAGAACCTGACCGGCGGCA
** **** *
2720508 TTGGGGTTCTGGCGATT-GGGGGCCCAGGGGGGTGTGCGCA-AGTGATGTGTGATGGGTGCTGGT
769 TTGGGGTTCCAGCGATTGGGGGGGGGGGGGGGGTGTGCGCACA-TGATCTGTGATGGGTGCTGGT
*
2720571 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGA
833 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
2720635 GCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
2720700 TCAAATGGTCACAAAATCCTGTACGCTTCGAGTTTTTAGCTAAATTTTTTTGTGCACGCCAACAA
66 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
2720765 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTTGAAAAAATTTTAAAAAAAT
131 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
* * * * *
2720830 CTCAAACCGTAAAAAGTTTAAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
196 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
2720895 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAG
261 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAG
* * *
2720960 AAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCAATGGCTTGCGCATCCCGCCTC
326 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* ** * *
2721025 TCTGGTCGGTGTAGTGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACCG-AGTTCA
391 TCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA-CGAAGTTCA
2721089 TTCCCAGTCTAAGAT
455 TTCCCAGTCTAAGAT
2721104 TAGATCGAAC
Statistics
Matches: 3570, Mismatches: 404, Indels: 216
0.85 0.10 0.05
Matches are distributed among these distances:
861 8 0.00
862 48 0.01
863 357 0.10
864 69 0.02
865 15 0.00
866 2 0.00
867 8 0.00
868 14 0.00
869 12 0.00
870 6 0.00
871 12 0.00
872 11 0.00
873 132 0.04
874 5 0.00
876 1 0.00
890 1 0.00
893 1 0.00
896 2 0.00
897 2 0.00
898 63 0.02
899 66 0.02
900 887 0.25
901 247 0.07
902 244 0.07
903 21 0.01
904 31 0.01
905 4 0.00
906 14 0.00
907 65 0.02
908 354 0.10
909 52 0.01
910 10 0.00
911 1 0.00
913 1 0.00
915 1 0.00
916 1 0.00
917 1 0.00
918 2 0.00
919 1 0.00
923 2 0.00
924 1 0.00
925 6 0.00
926 672 0.19
927 7 0.00
928 48 0.01
929 59 0.02
930 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
TCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
TCCCAGTCTAAGATCAGACCAAATGAGGGTTGTAGAAGCAGGATTAATAGCACGCAGAGGGGGAC
CTGCCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAG
ATCGAACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTT
TTTTCGCCGGGGCACCATCAGCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAG
CGATTGGGGGGGGGGGGGGGGTGTGCGCACATGATCTGTGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
Found at i:2721349 original size:26 final size:26
Alignment explanation
Indices: 2721313--2721391 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2721303 GTTAACTTAG
*
2721313 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2721339 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2721365 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2721391 G
1 G
2721392 ATCGGATTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2726609 original size:26 final size:26
Alignment explanation
Indices: 2726573--2726651 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2726563 GTTGACTTAG
*
2726573 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2726599 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2726625 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2726651 G
1 G
2726652 ATCGGACCGA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2728932 original size:27 final size:27
Alignment explanation
Indices: 2728874--2728932 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
2728864 CTCCTTCTGA
**
2728874 AAAAAGTTTTAAAAAATCCTGAATCAT
1 AAAAAGTTTTAAAAAATCCTGAAAAAT
* *
2728901 AAAAAGTTTT-GAAAATCGTGAAAAAT
1 AAAAAGTTTTAAAAAATCCTGAAAAAT
2728927 AGAAAA
1 A-AAAA
2728933 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.56, C:0.07, G:0.12, T:0.25
Consensus pattern (27 bp):
AAAAAGTTTTAAAAAATCCTGAAAAAT
Found at i:2728979 original size:898 final size:892
Alignment explanation
Indices: 2726599--2731508 Score: 6028
Period size: 896 Copynumber: 5.5 Consensus size: 892
2726589 CCCATTCTAA
2726599 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGA-CG-A-
* * * * * *
2726664 CGAGGGTTGTGGGTGCACATGCTAGGCTTGGGCATGAGCTGGTGCCGTATTTTTTTTTTACCCAG
63 C-AGGGTTGCGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTTCA-CCAG
* * * * ** * * * * *
2726729 GGCCCCATTGCCGAAGCAACGTCGGACAACCTGACCAGCGACATTGGGGTTCTGACAATTGGTAG
126 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCGATTGG--G
* * *
2726794 GGCAGAGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCC
189 GG-GGCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
2726859 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTCAGATTTAACAAGTT
252 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
2726924 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCCTA
317 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTG
* *
2726989 TACACTTCAAGTTTTTAGCTG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAC
382 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
** * *
2727053 CAAGTTTGGGGCCAAAACTCAGTCTGAAAAAATTTAAAAGAAAT-CTCGAACCGTAAAAAGTTTC
447 CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA-AAATCCT-GAACCATAAAAAGTTTC
** *
2727117 AAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
510 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
* * * *
2727182 CATTGTATGAATTTACAAGCCATAAAAATAGAATTGCCATGGCAAAAATATGAAGATTTGCCTAA
575 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAA
* ** * * *
2727247 ACCCACCTACCACCCTGTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCACAATGTCCT
640 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
2727312 TCTACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
705 CCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * ** * * **
2727377 GGATCAAGGGTTGCGGCAGCAGGATCGGCAGTAGGTAGGGGGGACCCAGCCGATCCCCGACTTAG
770 AGATCAAGGGTTGCGGAAGCAGGATCGACAGCAGACAGGGGGGACCCGGCCGATCCCTGACTTTC
* * ** * *
2727442 GCATCCTACCCCTCTGGTCGGCTGAGCGCTTGCACGTTCATTTCGTGGGTTGACTTAG
835 GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * *
2727500 GCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAAAGGAAGATTGGACCATAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGA-C-GAC
* * * ** *
2727565 AAGGGTTGCGGGTGCACATGCTGGGCTCAAGCATGTGCTCGTGCCGTTTTTTTTTTTCACTCGGG
64 -AGGGTTGCGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTTCAC-CAGG
* * ** * *
2727630 GCACCATTGCCAGAGCATCACCGGAGAACCTGACTGGCGGCATTAGGGTTCCGGTGATTGGGGGG
127 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCGATTGGGGGG
* * *
2727695 GCAGGGGGGTGTGCGCACATGATGTGCGATCGGTGCTGATACTTGGCCCTTATATTGG-CCCCTA
192 GCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
2727759 CCCCTCATCAAACCTCGAAAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
** *
2727824 CCAGTAGCCATTAAAGTGTCTGAAATGCTGACACTTTTTTCAAATGGTCAAAAAATCCTGTACAC
322 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* *
2727889 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGT
387 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
*
2727954 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAA-CAGTAAAAAGTTTCAAAAA
452 TTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAATCCTGAACCA-TAAAAAGTTTCAAAAA
2728018 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
515 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
2728083 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTCCCTAAACCTA
580 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCA
* * * * *
2728148 CCTACCACCCTATCGATCCACGGCTTGCACATCCCATCGCTCTGGCCAGCGTAGTGCCCGCCCGC
645 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCAC
* * * *
2728213 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACC
710 CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC
* * * * * * * *
2728278 GAGGGTTGCGGAAGCATGATCCACAACATACAGGGGGGACCCGGCCAAACCCTGACTTTCACATC
775 AAGGGTTGCGGAAGCAGGATCGACAGCAGACAGGGGGGACCCGGCCGATCCCTGACTTTCGCATC
* *
2728343 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTCG
840 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
2728396 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTGTAACATCGGACTGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGAC--GA-
* * * * * * *
2728461 CAAAGGTTGCGGGGGCACATGCTGGGCTCGGGCATGTGCTGATGCCACATTTTTTTTTCACCTGG
63 C-AGGGTTGCGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTTCACC-AG
* ** ** *
2728526 GGCACCATCGTCGGAGCATCGTCAAAGAACCTGACCAGCGGCATTGGGGTTTCGGCGATTGGGGG
126 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCGATTGGGGG
* *
2728591 GGCGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTGTATTGGCCCCC
191 GGCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
2728656 TATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGC
255 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
2728720 TGCTAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
320 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* *
2728785 ACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAACAATACAAGGATCACATCTACCA
385 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCA
* **
2728849 AGTTTGGGGCCAAAACTCCTTCTGAAAAAAGTTTTAAAAAATCCTGAATCATAAAAAGTTTTGAA
449 AGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAAATCCTGAACCATAAAAAGTTTCAAA
* * *
2728914 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAATCTTCACATGAAGGCTTAAGCGACCAT
513 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* * * *
2728979 TGTAAGAATTTACAAGCCATAAAAATGGTAATGGCATGGCAAAAATATGAAGATGTGCCTAAAAC
578 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACC
* *
2729044 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCTG-CTTCTCTGGCCGGCGTAGTGTCCGCC
643 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC-TCTCTGGCCGGCGTAGTGCCCGCC
* * * *
2729108 CACCCGAC-CGTTTTGTTAGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATC-GCATC
707 CACCCG-CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACC
* ** * * * *
2729171 AAATCAAGGGTT-ATGACAGCAGGATCGATAGCACGA-AGGGGGG-CCCGGTCGATCCCCGGCTT
770 AGATCAAGGGTTGCGGA-AGCAGGATCGACAGCA-GACAGGGGGGACCCGGCCGATCCCTGACTT
* * * ** *
2729233 GCACATCCTGCCCCTTTGGCCAACTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAG
833 TCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
2729293 GCATACGGAGTTCATTCCCAGTGTAAG-AT-C-GA----A---CC---G---GAT----CG--AG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACGACAG
* *
2729336 GGTTACGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCCTTTTTTTTTGC-CC-GGGCA
66 GGTTGCGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTT-CACCAGGGCA
* * * * *
2729399 CCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGAGATTGGGGGGTCG
130 CCATCGCCGGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCGATTGGGGGGGCG
** *
2729464 GGGGATTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCC
195 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
2729529 CTCATCAATCCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCCGCTA
260 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
2729594 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTC
325 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
* * * *
2729659 GAGTTTGTT-GCTGAATTTTTTTTTTTGCATACCAAAAAAAATGCAAGGATCACGTCTACCAAGT
390 GAGTTT-TTAGCTGAA--TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
2729723 TCGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAACTCCCGAACCATAAAATGTTTCAAAAA
452 TTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAAAA-TCCTGAACCATAAAAAGTTTCAAAAA
* * *
2729788 TCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATTAAGGCTTAAAGGACCATTG
515 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
2729853 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTTAACCCA
580 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCA
* * ** ** *
2729918 CCTACCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCTCTAACATGCGTAGTGCCCTCCCAC
645 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCAC
* * * *
2729983 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGA--ATGAACAGGA
710 CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCA-GA
* ** * * * * ** *
2730046 TCGAGGGTTGTAGCAGCAGGATC-AGTAGCA-CCTAGGTGGGGACCCGACAAAT-CCTCGACTTC
773 TCAAGGGTTGCGGAAGCAGGATCGA-CAGCAGAC-AGG-GGGGACCCGGCCGATCCCT-GACTTT
* * * *
2730108 CGCATCCTACCCCTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAG
834 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
2730167 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGGGTTCATTCCCAGTGTAAGATCGGACTAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGAC--GA-
* *
2730232 CGAGGGTTACGGGTGCACATGCTAGGCTCGACCATGTGCTGGTGCCGCA--TTTTTTTCACCCAG
63 C-AGGGTTGCGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTTCA-CCAG
* * * *
2730295 GGCACCATCGTCGGAGCATCACCAGAGAACCTGACCAGCAGCATTGGGGTTTCGGCGATTGGGGG
126 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCGATTGGGGG
* * * * * * *
2730360 GACGAGAGGGGTGTGGGCACATGATGTGCGATTGGTGCTGGTACTTGGCCTTTGTATTGGCCCCA
191 GGCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
2730425 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGC
255 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
2730490 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
320 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* * *
2730555 GCTTCGAGTTTTGAGCTGAATTTTTTTGTGCAAGCCAACTAAAAA-ACAAGGATCACGTCTACCA
385 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCA
*
2730619 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAA
449 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAATCCTGAACCATAAAAAGTTTCAAA
* * * *
2730684 AATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAGACTTCACATGAAGGCTTAGGGGACCAT
513 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* * **
2730749 TGTAT-AATTTACAAGCCACAAAAATGGCGTTGGCATGGCTGAAATATGAAGATGTGCCTAAACC
578 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACC
* * * * * * * *
2730813 CACCTACCACCCTATCGAACCACGGCTTGCTCATCCCGCCTTTTTGGCCGGCTTAATGCCCCCCC
643 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * *
2730878 ACCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAA-AACAGATCGG
708 ACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCAG
* * * *
2730942 ACCAAGGGTTGCGGTAGCAAGATCGACAGCACG-CAGGGGGGACCCGACCGATCCCTGACTTGT-
772 ATCAAGGGTTGCGGAAGCAGGATCGACAGCA-GACAGGGGGGACCCGGCCGATCCCTGACTT-TC
* * *
2731005 GCATCCTGCCCCTCTAGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAG
835 GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
2731063 GCATACGGAGTTCATTCCTAG--T--G--TA---AG---A-T--C---G---GATCGGAC-AGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACGACAG
* * * * *
2731106 GGTTGCGGGTGCACATACTGGGCTCCAGCATGTGCTGGTGTCGTATTTTTTTTTGC-CCAGGGCA
66 GGTTGCGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTT-CACCAGGGCA
* * * *
2731170 CCATCGCCGGAGCATCACTGGAGAACCTGACC-GATGACATTGGGGTTCCAGCGATT---GGGGC
130 CCATCGCCGGAGCATCACCGGAGAACCTGACCAG-CGGCATTGGGGTTCCGGCGATTGGGGGGGC
* *
2731231 -GGGGGGTGTGCGCACATGATTTACGATGGGTGCTGGTA-------C-----TTGG--CCC--TC
194 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
2731279 CCTCATCAAACCTCGAGAACTCACCCCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
2731344 AGTAGCCATTAAAGAGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
* * *
2731409 CAAGTTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGAATCACGTCTACCAAGTTT
389 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
2731474 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
454 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
2731509 ATCTCGTGTA
Statistics
Matches: 3498, Mismatches: 426, Indels: 222
0.84 0.10 0.05
Matches are distributed among these distances:
849 11 0.00
850 206 0.06
852 2 0.00
854 4 0.00
866 33 0.01
868 85 0.02
869 174 0.05
870 46 0.01
871 180 0.05
872 278 0.08
873 9 0.00
874 85 0.02
875 11 0.00
876 1 0.00
877 2 0.00
878 1 0.00
881 4 0.00
883 1 0.00
884 4 0.00
887 3 0.00
890 6 0.00
892 1 0.00
894 3 0.00
895 142 0.04
896 614 0.18
897 407 0.12
898 613 0.18
899 113 0.03
900 213 0.06
901 246 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACGACAG
GGTTGCGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTTCACCAGGGCAC
CATCGCCGGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCGATTGGGGGGGCGG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTC
GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGT
TGCGGAAGCAGGATCGACAGCAGACAGGGGGGACCCGGCCGATCCCTGACTTTCGCATCCTGCCC
CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:2730197 original size:26 final size:26
Alignment explanation
Indices: 2730167--2730219 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2730157 GTTGACTTAG
2730167 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
** *
2730193 GCATACGGGGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2730219 G
1 G
2730220 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2733254 original size:26 final size:26
Alignment explanation
Indices: 2733218--2733270 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2733208 GTTGACATAG
*
2733218 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2733244 GCATACGGAGTTGATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2733270 G
1 G
2733271 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2733777 original size:895 final size:894
Alignment explanation
Indices: 2731922--2755906 Score: 13313
Period size: 895 Copynumber: 26.4 Consensus size: 894
2731912 GTTTGGGGCC
* **
2731922 AAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCACCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * *
2731987 ACTTCAAATGAAGGCTTAAGGGACCGTTGTATGAATTTTCAAGCCATAAAAATGGCATCGACATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
2732052 GCAGAAATATGAAGATGTGTCAAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** * * * *
2732117 CCTTTCTGATCGACGTAGTGCCCGCCCGCCTGCCCATTTTGTTGGTTGGCTTAGGCATACGGAGT
196 CCTCTCTGGCCG-CGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * *
2732182 TCATTCCCAGTCTAAAATTAGACCAGACCAAGGGTTGCGGT-AGCAAGATCGGTAGCACACAGGG
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAAGG
* * *
2732246 GGGTACCCGACCGATCCCCGACTTGTGCATCCTGCCCCTTTGGCCGGTTGAGCGCCCGCACGCTC
325 GGG-ACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
2732311 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCTCAGTCTAAGCGTACGGAGTTCATTCCCA
389 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * * * * *
2732376 ATGTAAGATTAGATAGGACCAAGGGTTACGGGTGCACATGCAGGGCTCGAGCATTTACTGGTGTC
454 GTGTAAGATCAGACAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * ** * * ** *
2732441 ACATTTTTTTTT-C----G--CC--CG--GGTTACCATCGTTAGAGAACTTGACCAACGGTATTG
519 GCATTTTTTTTTGCTTGGGCACCATCGCCGG--AGCATCACTGGAGAACCTGACCGGCGGCATTG
* * * * * * *
2732495 GGCTTCAGGTGATTGGGGGGGCAGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGCACTTG
582 GGGTTCCGGCGATT-GGGGGG-ACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
2732560 GCCCTTATATTGACCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
645 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
2732625 GAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
710 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
2732690 GGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
775 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * * * * *
2732755 AAGGATCACATGTACCAAAGTTT-GGACCAAAACTCCTTTTGAAGAAATTTTTAAA
840 AAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * *
2732810 AAATCCCGAACCATAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
2732875 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * * *
2732940 GCAAAAATATGAAGATCTGCCTAAACCCAGCTACCATCCTATCAATCCACGACTTGCGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
2733005 CCTCTCTGGCCAGCATAGTGCCCGCCCGCCTGCCCGTTTCGTCGGTTGGCTTAGGCATATGGAGT
196 CCTCTCTGGCC-GCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
2733070 TCATTCTCAATCTAAGATCAGACCGGACCGAGTGTTGCAGTCA-CAAGATCGGTAGCACACAATG
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAA-G
* * * * *
2733134 GGGGACCCGATCGATCCCCGGCTTGTGCGTCCTGCCCCTTTGGTCGGTTGAGCGCCCGCACGCTC
324 GGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
2733199 GTTACGTGGGTTGACATAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTGATTCCCA
389 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
2733264 GTGTAAGATCAGACAGGATCGAGGGTTACGGGTGCACATCCTGGGCTCGGGCATGTGCTGGTGTC
454 GTGTAAGATCAGACAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * *
2733329 GCTTTTTTTTTTGCTTGGGGCACCA-CGCCGGAGCATCACTAGAGAACCTGACCGACGGCAATGG
519 GCATTTTTTTTTGCTT-GGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGG
2733393 GGTTCCGGCGATTGGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
583 GGTTCCGGCGATTGGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
2733458 CTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAG
648 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
2733523 ATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
713 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
2733588 CACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
778 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* * * *
2733653 GATCATGTCTACCATGTTTGGTGCCAAAACTCCTTCTGAAGAAATTTTAAAA
843 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* ** *
2733705 AAATCTCGAACCGTAATAAGTTTCAAAAATCACAAAAAATAGAAAACGAGTCGTCTTGCCACGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
2733770 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* ** *
2733835 GAAGAAATATGAAGATGTGCCTAAACGAACCTACCACCCTATCGATCCACGGCTTGTGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * ** *
2733900 CCTCTCTGGCCGACGTAGTGCCTGCCCGCCTGGTTGTTTTGTCAGTTACCTTAGGCATACAGAGT
196 CCTCTCTGGCCG-CGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * ** *
2733965 TCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTG-TGGCAGCAGGATCAGCAACATGCAGGG
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAAGG
* ** * * *
2734029 GGAGACTCGGCCGATCCCCGACTTGTGCATCCT----ATC---CCGGCT---TG--TGCACGCTC
325 GG-GACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
2734082 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-C---G--TA---AG---A-T--C-
389 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
2734131 --G--A-A-C---C-GGACCGAGGGTTACGAGTGGACATGCTGGGCTCGGGCATGTGCTGCTGCC
454 GTGTAAGATCAGACAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * **
2734186 GCATCTTTTTTTCAT-CTGGGGCACCATCGCCAGAGCATC-GTCGGAGAACCTGACCTACGGCAT
519 GCAT-TTTTTTT--TGCTTGGGCACCATCGCCGGAGCATCACT-GGAGAACCTGACCGGCGGCAT
* * * * *
2734249 TGGGGTTCCGACGATTGGGGGGGCGGGGGGGGGGGTTTTGCGCACATGGTGTGCGATGGGAGCTG
580 TGGGGTTCCGGCGATTGGGGGGAC------GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTG
* * * ** *
2734314 GTATTTGGCCCTTCTAATGGTGCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
638 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
2734379 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
703 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
2734444 TTCAAATGGTCACAACATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
768 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* ** * *
2734509 AAAATACAAGGATCACGTCTACCATGTTTGGGGCTTAAACTCCTACTGAAAAAATTTTTAAA
833 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * * * *
2734571 AAATCCCAAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
2734636 ACTCCACATGAAGGCTTAAGGGGCCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
2734701 GTAGAAATCTGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCTG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
2734766 CCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTAGGCTTAGGCATACGGAGT
196 CCTCTCTGGCCG-CGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * ** *
2734831 TCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTAG-AGTTAGCAGGATTGGCAGCACGTAGGG
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAAGG
* * * ** * * *
2734895 GGGAACCTAGCCGATCCCCGACTTACGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGTACGCAC
325 GGGACCCGA-TCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
2734960 GTTTCCTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
389 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * *
2735025 ATGTAAGATCGGATC-GGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTG-
454 GTGTAAGATCAGA-CAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *
2735088 C-TATATTTTTTTT--TT--G--CC--CG-GGGCACCATCACCGGAGAACCTGATCGGCGGCATT
518 CGCAT-TTTTTTTTGCTTGGGCACCATCGCCGG-AGCATCACTGGAGAACCTGACCGGCGGCATT
* * ** *
2735143 GGGGTTCTGACGATTGGGGGGTGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
581 GGGGTTCCGGCGATTGGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
2735208 CCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCTTTAAAGAGCATTTG
646 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * *
2735273 AGATTTTACAGGTTTACTGCCAGTAGCCATTAAACTGTCTAAAATGGGGACACTTTGTTCAAATG
711 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
2735338 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACA
776 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * * * *
2735403 GGGATCATGTCTACCAAATTTGGGGCCAAAAGTCCTTCTAAAAAAATTTTTCAAA
841 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAA
* **
2735458 AAATCTCGAACCTTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* **
2735523 ACTTCACATAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
2735588 GTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACAGCTTGCGCATCCTG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
2735653 TCTCTCTGGCCGACATAGTACCCGCCCACCAGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGT
196 CCTCTCTGGCCG-CGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * * ** * *
2735718 TCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTGTGGT-AGTAGGATCAACAGCACATAGTG
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACA-AG
* * * * * *
2735782 GGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCTTCTGGTCGGCTGAGCTCCCGCATGCTC
324 GGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
2735847 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
389 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * * *
2735912 GTGTAAGATCAGACTGGACCGTA-GGTTACGGGTGCACCTGTTAGGCTCAGGCATTTGCTGCTGC
454 GTGTAAGATCAGACAGGACCG-AGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * ** * *
2735976 CACATTTTTTTTCGCCCGGGGCACCAT---C---G--T--C-GGAGAACTTGACCGGCAGCATTG
518 CGCATTTTTTTTTG-CTTGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTG
* * * *
2736030 GGGTTTCAGCGATTGGGGGGGCGGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGC
582 GGGTTCCGGCGATTGGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * ** *
2736095 CCTTATATTGGCCCCCTATACCACATCAAACCTTAAGAACTCACACCCCTTTAAAGAGCATTTGA
647 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
2736160 GATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
712 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
2736225 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGAGCAAGCCAAAAAAAATACAA
777 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
** *
2736290 GGATCACGTCTACCAAGTTTGGTCCCAAAACTCCATCTGAAAAAATTTTAAAA
842 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* *
2736343 AAAT-TCTGAATCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
1 AAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
2736407 AACTTCACATGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
65 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
2736472 AGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
130 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * **
2736537 GCCTCTCTGGTCGGCGTAGTGCCCACCC-ACTCGCTCGTTTTATCGGTTGGCTTAGGCATACGGA
195 GCCTCTCTGG-CCGCGTAGTGCCCGCCCGCCT-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** ** * * * **
2736601 GTTCATTCTCTGTCTAAGATCAGACCAAACTGAGGGTTGCAG-CAGCAAAATTGGTAGCACGTAG
258 GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACA-
* * * * * * *
2736665 AGGGGGACCCGGTCGATCCCTGATTTGTGCATCCTGCCTCTCTGGCCTGCTGAGAGCCCGCACAC
322 AGGGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * * *
2736730 TTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTTTAAGCATACAGAGTTCATTGC
387 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
2736795 CAGTGTAAGATCGGACCA-GACCGAGGGTGGCGGGTGTACATGCTGGGCTCGTGCATGTGCTGCT
452 CAGTGTAAGATCAGA-CAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
2736859 GCCACATTTTTTTTCGCTCGGGGCACCAT------AG---C-C-GGACAACCTGACCGACGGCAT
516 GCCGCATTTTTTTTTGCT-TGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCAT
* * * * * * *
2736913 TGGAGTTCTGACGATTAGGGGGGCAGTGAGGGGTTTGCGCACATGATGTGGGATGGGTGCGGGTA
580 TGGGGTTCCGGCGATT-GGGGGG-A-CG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
2736978 CTTGGCCCTTATCTTGGCCTCTTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
641 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
2737043 ACTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTC
706 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
2737108 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGTGCATGCTAACAAAA
771 AAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
*
2737173 ATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
836 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
*
2737232 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * * *
2737297 ACTTTACATGAAGACTTAAGCGACCATTGTATGAATTTAAAAGCCACAAAAATGGCATTGGTATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
2737362 GCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
2737427 CCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCTCGTTTCTTCGGTTGGCTTAGGCATACGGAGT
196 CCTCTCTGGCC-GCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * **
2737492 TCATTCCCAGTCTAAGATCATACCGGAACAAGGGTTGC-GGCAGCAAGATCAGCAGCATGC-AGG
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAAGG
* ** * * * *
2737555 AGAGGACCTGGCCGATCCCTGGCTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
325 -G-GGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
2737620 CGTTTCATGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
388 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
2737685 AGTGTAAGATCAGATC-GGACTGAGGGTTGTGGGTGCACATGCTGGACTCGAGCATATGCTGGTG
453 AGTGTAAGATCAGA-CAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* ** * * * * *
2737749 CCGCATTTTTTTTCGCGCAGGGCACCATCGTCGGAGCGTCACCGGAGAACCTGACTGGCAGCATT
517 CCGCATTTTTTTTTGC-TTGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATT
* *
2737814 GGGGTTTCGGCGATTGGGGAGG-CGGGTGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTT
581 GGGGTTCCGGCGATTGGGG-GGACGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
2737878 GGCACTTATATTGGCCCCCTATCCCTCACCAAACCAT-GAGAACTCACACCCCCCTTAAAGAGCA
644 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACA-CCCCCTTAAAGAGCA
* *
2737942 TTTGATATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
707 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * ** *
2738007 AATGGCCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAA
772 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * ** *
2738072 TACAAGGATCACGACTACCAAGTTTGGGTCTTAAACTCCTTCTGAAAAAATTTTTAAA
837 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * * * *
2738130 AAATCCCAAACCATAAAAAGTTTCCAAAATCATGAAAAATAGAAAATGGGTCGTCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
2738195 ACTTCACATGAACGCTTAAAGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGGATT
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC------ATT
* *
2738260 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCAC
125 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
2738325 ATCCCGCCTCTTTGACCAGCGTAGTGCCCG--C-CC-GCTCGTTTCGTCGGTCGGTTTAGGCATA
190 ATCCCGCCTCTCTGGCC-GCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
2738386 CGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGCAGT-AGTAGGATCGGTAGCAC
254 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCAC
* * **
2738450 ACAAAGGGGGACCC-AGTCGATCCCCTG-CTTGTGCATCATGCCCCTCTGGCCGGCTGAGCACTT
319 AC-AAGGGGGACCCGA-TCGATCCCC-GACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * *
2738513 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAACATACGGAGTT
381 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
** * * * *
2738578 CATTCCCAGTGTAAGATCAGACCA-GACCGACAGTTGTGCGTGCACATGCTGGGCTCAGGCAGGT
446 CATTCCCAGTGTAAGATCAGA-CAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGT
* ** * * * * *
2738642 ACTACTGCTGCA-TTTTTTTCGCCCTGGGCACCATCACCGGAGCATCA-TCGAAGAACCTGACCG
510 GCTGGTGCCGCATTTTTTTTTG-CTTGGGCACCATCGCCGGAGCATCACT-GGAGAACCTGACCG
* * * * *
2738705 GTGGCATTGAGGTTCCGGTGATTGGGGGG-C--GGGTGTGCGCACATGATGTACGATGGGTACTG
573 GCGGCATTGGGGTTCCGGCGATTGGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * *
2738767 GTACTTGGCCGTTATATTGGCCCCCCCTATCCCTCATCAAAACTCAAGAACTTACACCCCCTTAA
638 GTACTTGGCCCTTATATTGG--CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
2738832 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTGAATTGGGGACACTT
701 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * * *
2738897 TTTTCAAATGGTCACAAAATCATGTACA-ATAAGAGTTTTTAGGTGAATTTTTTTATGCATGCCG
766 TTTTCAAATGGTCACAAAATCTTGTACACTTCA-AGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
2738961 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAA
830 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* *
2739026 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
2739091 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
2739156 GCAGAAATATGAAGATGTGCCTAAACCCACCTTCCACCCTGTCGATCCACGGCTTGCGCATCCCA
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
2739221 CCTCTCTGCCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCA
196 CCTCTCTGGCC-GCGTAGT--------GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCA
** * * * *
2739286 TAAAGAGTTTATTCCCAGTTTAAGACCAGACCGGA-CAGAGGGTTGCAG-CAGCAGGATCGGCAG
252 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA-AGGGTTGCAGTCAGCAAGATCGGCAG
** * * * *
2739349 CATGCAGAGGGGGACACGGTCGATCCCCGACTTGTGCATCCTGCCCTTCTGGCCGGCTGAGTGCC
316 CACACA-AGGGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * * *
2739414 CGCACGCTCTTTTCGTAGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACAGAGT
380 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * ** *
2739479 TCATTCCCAGTGTAAGATCGGACAGGACCGAGGGTTGCGGGTGCACATACTGAACTCGAGCATGT
445 TCATTCCCAGTGTAAGATCAGACAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGT
* * * * * *
2739544 GGTGGTGCCGTA-TTTTTTTT-C----G--CC--CG-AGGTGCCATC-GTCGGAGAACCTAACCG
510 GCTGGTGCCGCATTTTTTTTTGCTTGGGCACCATCGCCGGAG-CATCACT-GGAGAACCTGACCG
* * ** *
2739597 GCGGCATTGGGGTTCCGGCGATTGGGGGGGCGAGGGGGAGTGCGCACATGATGTTTGTTGGGTGC
573 GCGGCATTGGGGTTCCGGCGATTGGGGGGAC--GGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
2739662 TGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGACAACTCACACCCCCTTAA
636 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
2739727 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAATGGGGATACTT
701 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
**
2739792 TTTTCAAATGGTCAC-AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGTGCATGCC-
766 TTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCA
* * *
2739855 AACAAAATAC-AGGATCACGTCCACCCAAGTTTGCGGCCAAAA-TCCTTCTGAAAAAATTTTAAA
830 AAAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
2739918 A
894 A
* * ** * *
2739919 AAATC-CTGAACCATAAAACGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
1 AAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
2739983 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGAT
65 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
2740048 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACAGCTTGCGCATCCC
130 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
2740113 GCCTCT-TAGCCAACGTAGTGCCCGCCCG-CTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
195 GCCTCTCTGGCC-GCGTAGTGCCCGCCCGCCT-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * **
2740176 GTTCATTCCCAGTCTAAGATC-GAACCGGATCGAGGCTTG-TGGCAGCAAGATCGACAGCAC-GT
258 GTTCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACA
* * *
2740238 AGGGGGACCCGA-CTGATCCCCGAC-T-T--A-CCT----ATCTGGCCGGCTGAGTGCCCGCATG
322 AGGGGGACCCGATC-GATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
2740293 CTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
386 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
2740358 CCAGTGTAAGATCAGACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGTATATGCTGGT
451 CCAGTGTAAGATCAGACAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
* * ** ** * * * *
2740423 GTCGCATTTTTTTTTTCACCCGAGGTGCCATCGTC-GAGCATCGAC-GAAGAACCTGACTGACGG
516 GCCGCA-TTTTTTTTT-GCTTG-GGCACCATCGCCGGAGCATC-ACTGGAGAACCTGACCGGCGG
* ** ** *** * * * * ****
2740486 TGATTGCTGTTCAC-GCGATTGGGGGGGTGTGCACGCAAGGGGGGACCT-A-GT-CGATCCCCAG
577 -CATTGGGGTTC-CGGCGATTGGGGGGACG-G---GGGTGTGCGCACATGATGTGCGAT-GGGTG
* * * ** * *** * ** ** * *
2740547 CTTGTGCATCCT-GCCC-T-T-CTGGCCGGCTGAGCGCCTGCA-CGCTCGTTTCGTTAGTTGACT
635 C-TG-GTA-CTTGGCCCTTATATTGGCCCCCT-ATC-CCT-CATCAAAC--CTCGAGAACTCACA
**** * ** ** * *** * * ** **
2740607 TAGGCATACGGAGTTCATTCCCAG-TCTAAGCATACAGAGTTCATTCCCAGT-G-TAGGATCG-G
692 CCCCCTTAAAGAG--CATT-TGAGAT-T----TTACAG-GTTTGCTGCCAGTAGCCATTAAAGTG
* * * ** * *** * * * * ** * * * **
2740668 ACCGGACCGAGGGATAC-GGGTGCACATGCTCAGCTCGGGCATGTGCTGGTGC-C-GCATTTTTT
748 TCTGAAATG-GGGACACTTTTTTCAAATGGTCA---C---AAAAT-CTTGTACACTTCA-AGTTT
* ** ***** ** * * ** * *** **
2740730 TTCACCCTAGGCACCGTCGCCAGTGCATCGTTAGATAACCTGACCGATGGCATTGGGGTTCTGGC
804 TT-A-GCT--G-A-ATTTTTTTGTGCAT-GCCAAAAAAAAT-A-C-AAGG-A-TCACG-TCTACC
* ** * ******* * * ** * *
2740795 GAGTGGAGGGGGC-GGGGGGGTGTGTGCACATGATGTGT-AAT
856 AAGT-TTGGGGCCAAAACTCCT-TCTG-AAAAAAT-TTTAAAA
*** * * * * ** ** **** * * * * * * **
2740836 GGGTGCTGGTACTTGGCCCTATATTG-GCCCCCTATCCCTGATCAAAGGTCGAGAACTCA-ACCC
1 AAAT-CTCG-A----ACCGTAAAAAGTTTCAAAAAT-CATGA--AAA-ATAGAAAAC-GAGTCGT
* * * * * * ** *
2740899 CTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTATAGTGTTCAAAATGGGTA
55 CTT-----GCCA-TGAAACTTCACA-------TG--A--AGGC-TTA-AG-G--GACCAT-TGTA
* * * * * * * ** * * * * ***
2740964 -CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGC
97 TGA--ATTTAC-AA--GCCATAAAA--ATG-GCA-TT-G-G--CATGGCAGAAATATGAAGATG-
** ** *** * * * *
2741027 ATGCC-AAA-AAAAATA-CA-AAGATCGCGTCTACCAGGTTTGGGGCCAAAAATCCTTCTGGAAA
148 -TGCCTAAACCCACCTACCACCCTATCG-ATCCA-C-GGCTT-GCG-C----ATCC--C--G---
** * * ** * ***** * * * ***
2741088 AATTTTTAAAAAATCTCGAACCATAAAAAGTGCCAAAAATG-GTGAAAAATAGAAAACGAGTCGT
196 CCTCTCT-----GGC-CG---CGT----AGTGCC-CGCCCGCCTG----CTCG-TTTC--GTCG-
* * ** * * * *** * ** ** *
2741152 GTTGCCATGAAACTTCATATGAAGGCTTAAGGGACCATTGTTTGAATTTACA-AGCCATA-AAAC
239 GTTGGC-T--TA-GGCATACGGA-G-TTCA-TTCCCA--GTCT-AAGAT-CAGA-CCGGACCAA-
* * * * ******* * * *
2741215 TGGCATTGGCATGGT-AGAAATATGAAGAT-GTGCCTA-AACCCTTCTACCACCCTATCAATCCA
291 -GG-GTT-GCA--GTCAG------CAAGATCG-G-C-AGCACACAAGGGGGACCCGATCGATCCC
* * * * * * * * * * * *
2741277 CGGCTTGCGCATCCCGCCTCTCTTGCTGGCGTAATGCCCGCCCGCCCGTTTGTTTCGTCGGTTGG
342 CGACTTGTGCATCCTGCCCCTCTGGCCGGC-TGA-G--CGCCCGCACGCTCGTTTCGTGGGTTGA
* * ** **
2741342 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT--GTGGCA--ACA
403 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG--CATA-C-G---GA--GTTCATTCCCAGTGTA
* * * * * * ** ** * * *
2741403 AGATCA-ACAGCA-CGTAGGGGGGAATCGACCGATCCCCA-GCTTACGCATCCTGCCCCTTTGGT
459 AGATCAGACAGGACCG-A---GGG--TTG-CGGGTGCACATGC-TGGGC-T-C-GGGCATGTGCT
** * * * * **
2741465 CGGATTAGCGCCCGCACGCTCATTCTGTGGGTTGACTTAGG---CAT--ACGGAG-TTCATTCCA
513 -GG--T---G-CCGCA---T--TT-T-T-TTTTG-CTTGGGCACCATCGCCGGAGCATCACTGGA
** * *** ** * * *** * * *
2741524 -AGTCTAAGCATACGG-AGTT--CATTCCCAGTGTAAGATCAGACCGGACTGAGGGTTACGGGTG
562 GAACCTGA-CCGGCGGCA-TTGGGGTT-CC-G-G--CGAT-TGGGGGGAC-G-GGGGT--GTGCG
* * * * * * * ** * *
2741585 CACATGCTG-G-GCTCGG-GCAT-GTGCTGGTGCCGCATTTGTTTTTTCCCAGGGCACCATCGCT
615 CACATGATGTGCGATGGGTGC-TGGTACTTG-GCC-C--TTATATTGGCCC----C-CTATCCCT
* * * * * * ** * *** * * * * *
2741646 GGAGC-ATCGTTGGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGTGTGTGAAC
670 -CATCAAAC-CTCGAGAA-CTCA-C-ACCCCCTTAAAG----AGC-ATT--TGAGAT-T-T-TAC
* * * * * ** * * * * ** * *** **
2741710 ATGATGTGCGATG--GGT-GCTAGT-ACTTGGCCTTTATATTGGCTCCCTATCCCTCATCAATCC
720 A-GGTTTGC--TGCCAGTAGCCATTAAAGT-GTC-TGAAATGGGGACACT-TTTTTCA--AATGG
* * *** * * ****
2741771 TC-GAGAA-CTCAAACCCCCTTAAAGAGCATA--TGAGATTTTACAGGTTTGCTGCCAGTAGCC-
777 TCACAAAATCTTGTA--CACTTCAAGTTTTTAGCTGA-ATTTT-----TTTG-TG-CA-T-GCCA
** * * * * ** * *
2741831 ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTTC-G
830 AAAAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCTG
** *
2741891 ---AGTTTTTAGCTGAATTT
881 AAAAAATTTTA----AA--A
*** **** ****** ** * *
2741908 TTTTCTGCATGCCAAAAAAAATACAAGTTTGTTTTGTGCATGCCAAAAA-A-AACCCAAGTTTGT
1 AAATCT-C--G--AACCGTAA-A-AAGTTTCAAAAAT-CATG--AAAAATAGAAAACGAG-TCGT
* * **** * * * * *** * * ***** * * *
2741971 TTTGTGCATGCCAAAAAAAAAATACAAGGATCACATCTACCA-AGTTTGGGGCCAAAACTCCTTC
55 CTTG-CCATG--AAACTTCACAT-GAAGGCTTA-AGGGACCATTGTATGAATTTACAA-GCC--A
** ***** * * * * * ** * * ***
2742035 TGAAAAAATGTTAAAAAAAT--CTTG-AAT-CGTAAAAAGT--TTAAA-AAATCATA-AAAAATA
112 T--AAAAATGGCATTGGCATGGC-AGAAATATG-AAGATGTGCCTAAACCCA-CCTACCACCCTA
*** * * * **** * * *** * * * ** ** *
2742092 GAAAACGAGTCGTCTTGC-CATGAAACTTCACATGAAGGCTTAAGGGACCG-ATGGATGAAT--T
172 TCGATCCA--CGGCTTGCGCATCCCGCCTCTC-TGGCCGCGT-AGTGCCCGCCCGCCTG-CTCGT
* * ** * * ** **** * ** *
2742153 TACAGGCCATAAAAATGGCATT-GGCATGGCAGAAAT-ATGAAGATGTGCCTAA-ACCCCACC-T
232 TTC-GTCGGT-----TGGC-TTAGGCAT-ACGGAGTTCATTCCCA-GT--CTAAGATCAGACCGG
*** * * * *
2742214 ACCACCCGAT-C-GATC--C--G--CGGCTTG--CAC-A-----TCCCG--C---CCCTCTGGC-
286 ACCAAGGGTTGCAG-TCAGCAAGATCGGC-AGCACACAAGGGGGACCCGATCGATCCC-C-GACT
* ** * * ** * * *** * * * *
2742257 TG-GCGTAATGCCCGC-C-CGCCTGCTCGTTTCGTCAGTTGGCTTAGGTATACG-GAGTTCATTC
347 TGTGCATCCTGCCC-CTCTGGCCGGCT-G-AGCGCCCGCACGC-T-CGT-TTCGTGGGTTGA--C
* * * * * * * *
2742318 CTAGTC-TA-GGA--TCAGATCGGATCGAGGGTTGCT--GCA-ACAGGA-TCGGCA-GCACATTG
404 TTAGGCATACGGAGTTCA-TTC----CCA--G-T-CTAAGCATAC-GGAGT--TCATTCCCAGT-
*** ** *** * * * *
2742374 GGGGGACTC-GATC--GATCCGCAGCTTGTGCATCCTGCCCCT-CT-GGC-C-GGC-TGAGC-GC
456 GTAAGA-TCAGA-CAGGA-CCG-AGGGT-TGC-GGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * ** * * * * *** *
2742430 TCCCACACTCGTTTCATGGGTTGACTTAGG---CAT--ACGGAGTTCATTCCCAGTCTAAGCAT-
515 TGCCGCA-T--TTT--T-TTTTG-CTTGGGCACCATCGCCGGAG--CA-TCACTGGAGAA-CCTG
* ** * ** **** * * * *
2742489 ACAGAG-TTCATTCCCAGGG-T---AAGATTAGATCAGATCAAGGGTTGTG-GCAGCAGGTTCAG
569 ACCG-GCGGCATT---GGGGTTCCGGCGATT-GGGGGGA-C-GGGGGTGTGCGCA-CATGAT--G
* * * ** * * * ** ** ** * *
2742548 CAGCACGCAGGGGGGAACCCG-AC-CGATCCC-CAGCTTGTGCATCCTGCCCCTCTGGTCGGCTA
624 -TG--CG-ATGGGTG--CTGGTACTTG-GCCCTTATATTG-GCCCCCTATCCCTC--AT---CAA
* * * * ** **** * * ** * *
2742610 AGCGCCAGCACGTTCATTTCGTGGGTTGACTTAG-GC-GTACAGAGTTCATTCCCA-GTCTAAGC
676 ACCTCGAGAAC--TCA-CAC-CCCCTT-A--AAGAGCATTTGAGA-TT--TT-ACAGGT-T-TGC
* * ** * * * ** ** *** * * *
2742672 ATACGGAGTTCTTTCCCAGTGT-AAGATCGGACCGGACCGAGGGTTAC-AGGTGCACATGCT-AG
728 -TGC-CAG----TAGCCA-T-TAAAG-T--GTCTGAAATG-GGGACACTTTTTTCAAATGGTCA-
*** * * * * ** * ** ** *
2742734 GCTCGAGCATGTGCAGGTGCTGCATTTTTTTTTTGCCTGGGCCACCA-TCGTCGGAGCATCGCCA
780 -CAAAATCTTGTACA----CTTCA--AGTTTTTAG-CT--G--A--ATTTTTTTGTGCAT-GCCA
* * ** ** *** * ****** * * *
2742798 GAGAACCTGACCGGCGGCATTGGGGT-T-CC-GGTGATTGGGGGGGCGGGGGGT-GTGC-GCACA
830 AAAAAAAT-A-C-AAGG-A-TCACGTCTACCAAGT--TT---GGGGCCAAAACTCCTTCTG-AAA
** * *** *
2742858 TGATGTGCGAT
884 AAATTTTAAAA
*** ** * *** *** **** * ** * * * **
2742869 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTTGAGAACTCACACGC
1 AAAT-C---T-C--GAACCGTA-AAAAG-TTTC-AAAAATCATGAAAAATAGAAAAC-GAGTCG-
* * * * * * ** *
2742934 CCTTAAGGAGCATTTGAGATTTTACAGGTTTGTTGC-T-A-GTAGCCATTAAGGTCTCTAAAATG
54 TCTT---G-CCA--TGAAACTTCACATG-AAG--GCTTAAGGGA-CCATT---G----T---AT-
* ** * ** * * * * ***
2742996 GGGACACTTTTTTCAAATGGTCGCA-AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
98 --GA-A---TTTAC-AA--G-C-CATAAA-AATG-GCA-TT-G-G--CATGGCAGAAATATGAAG
** ** * *** * * * * **** *
2743060 -TGCATGCC--AACAAAAATACAAGGATCA-CGTCTACCAAGTG-TGGGGCA--AAAACTCTTTG
145 ATG--TGCCTAAACCCACCTACCACCCT-ATCG-AT-CCACG-GCTTGCGCATCCCGCCTCTCTG
***** ******* **** ***** **** * * *
2743118 TGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATTGAAAAC-G
204 -G----CCGCGTAGTGCCCGCCCG--CC-T-GCTCGTTTCGTCGGT--TGGCTTA-GGCATACGG
* * * * * * ** * *
2743182 AG-TCATCTTGCCATGAAACTTCACATGAAGGCCTAAGGGACC-ATTGTATGAATTTACAAGCCA
257 AGTTCA--TTCCCA-G--TC-TAAGAT-CAGACC----GGACCAAGGGT-TGCA-GT-C-AG-C-
* * * * * *
2743245 TAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCC-ACCTACCACCCTATCCA
305 ----AA--G-ATCGGCA--GCACACA-A-G--G--G-G----GACCCGA--T------CGAT-C-
* * * * * * * * * *
2743309 TCCACGGCTTGCGCATCCCGCCTCTTTGGCCGACGTAGTGCCCGCCCGCTCGCTCGTATCGTTGG
340 -CC-CGACTTGTGCATCCTGCCCCTCTGGCCGGC-T-GAG--CGCCCGCACGCTCGTTTCGTGGG
* * * * * ** * * * *
2743374 TGGGCTTAGGCATACAGAGTTCATTCCCAATCTAAG-AT-TGGACCTGA--CCGAGGGT-TG--C
399 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * ** ** ** * * * ** ** * **
2743432 TG-CAGCA-CGCAGGGGCGACCCGACCA-ATCCCCGGCGACCCGACCAATCCCCGACTTGTGCAT
464 AGACAGGACCG-AGGGTTG-CGGGTGCACAT-GCTGG-G-CTCGGGC-AT--GTG-CTGGTGCCG
* *** * * * * ** ** * * ***
2743494 CCTACCCTTCTGGCCGGTTGAGCGCC--CGCACGCTCGTTTC-GTGG-G---TTGA-CTTAGGCA
520 CAT-TTTTTTTTG-C--TTGGGCACCATCGC-CG-GAGCATCACTGGAGAACCTGACCGGCGGCA
* * * * ** * * * *
2743551 TACGGAGTTCATTCCTAGTGTAAGATCGGACCGGATCGAGGGTTACGGGTGCACATGCTAGGCTC
579 T-TGG-G---GTTCC--G-G--CGATTGG-GGGGA-CG-GGGGT--GTGCGCACATG--ATG-T-
* * **** * *** * * * * * *
2743616 GGGTATCTGTTGGTG-TCGTA-TT-TTTTTTTTCGAGGGCACC-AT-CGTCA-GAGCATCGTCGG
625 GCG-A--TG--GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA--AACCTC-G
* ** * *** * * * * **** * *
2743675 AGAACCTGACCGACGGCGTTGGGGTTCCGACAATTGGGGGTGCGGCGGGGGGGGTGTG-TGCACA
682 AGAA-CTCA-C-ACCCCCTTAAAG---AG-C-ATTTGAGATTTTAC-----AGGTTTGCTGC-CA
* * **** * * ** * *
2743739 TGGTGTGCGATGGGTGCTGGTACTTGGCCCCTTATATTGGCCCCCTATTCCTCATCAAAGCTCGA
733 --GT-AGCCATTAAAG-T-GT-C-T-G------AAATGGGGACACT-TT--T-TTCAAA--T-G-
**** ** * ** * * ** * *
2743804 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-C--AAGTTTGCTG-CCGGTAGCCATTAA
776 G---TCACAAAATCTTGTACA-C-TTCAAGTTTTTAGCTGAATTTTTTTGTGC-AT-GCCA--AA
**** * * * * ** * *
2743865 AGTGTTTAAAATGGGGTCACTTTTTTCAA--AT-GGTCACAAAATCATGTACACTTC-GAGTTTT
832 A-AAAATACAA--GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCTGA-----
* * ** *
2743926 TAGCTGAATTTTTTTAT
882 -A---AAAATTTTAAAA
* * ** * * **** * **
2743943 GAATGC-C--ACC--AAAAA--TACAAGGATCATGTCTACAAAGTGTGGGGCCAAAAC-TCCTT-
1 AAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATG---A-AAAAT-AGAAAACGAGTCGT-CTTG
* ** * * ** ** * * * * **
2743999 CTGAAAAAATTTTA-AAAAAATC-T--CGAACCA-T-TA-AAAGTTTCAAAAATCATGAAAAATA
59 C-CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-
* * * * * * * * ** ** ***
2744057 GAAAACGAGTCGTCTTGCCATGAAACT-TCACATGAAG-GCTTAAGGGA-CCATTGTATTAATTT
119 G---GC-A-TTGGCATGGCA-GAAA-TATGA-A-GATGTGCCTAA---ACCCA-CCTACCACCCT
** * * * *** * ** * ** *
2744119 A-CAAGCCATAAAAATGGCATTG-GCATGGCAG-AAATAT-GAAG-AT-GTGCCTAAACCCACCT
171 ATC--G--AT--CCACGGC-TTGCGCAT-CCCGCCTCTCTGGCCGCGTAGTGCC--CGCCCGCCT
* * * * * **
2744178 ACCACTC-TATCGATCCGCGACTTGCGCATCCT-GCCACTCTGGCCGGCGTAGTGCCCGCTCGCC
226 ---GCTCGTTTCG-T-CG-G--TTG-GC-T--TAGGCA---T--AC-G-G-AGT--TCATTC-CC
* * * * ** * * * *
2744241 -CTCT-CGTTTCGGCGATAGGCTTAGGCATACGGAGTT-CATTCCCAGTCTAAGGTCAGACCAG-
268 AGTCTAAG-ATC--AGACCGG---A-CCA-A-GG-GTTGCAGT--CAG-C-AAGATC-G-GCAGC
* * * * * * *
2744302 ATTGAGGATTGTGGCAGCAAGATCGGCAGCACGCAGGGGGGCCCCAGCCGATCTTCGGCTTGCAC
317 A--CA-CA-AG-GG--G---GACCCG-A--TCG-A-------TCC--CCGA-CTT--G--TG--C
* * *
2744367 ATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGA
352 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* ** * *
2744432 GTTCATTCCCAGTCTAAGTATACAAAGTTCATTCCCAGCGTAAGATCGGACCA-GACCGAGGGTT
417 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGA-CAGGACCGAGGGTT
* * * * ** *
2744496 GCGGGTGCACATGCTGGGCTAGAGCATGTGCTGGTGCCACTTTTTTTTTTGCCCGGGGCACCATT
481 GCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTG-CTTGGGCACCATC
* * * * **
2744561 GCTGGAGCATCA-TCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACAATAGTGGGGCGGGGGG
545 GCCGGAGCATCACT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGAT--T-GGG-GGGACG
*
2744625 GAGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTT-GCCCTTATATT-GCCCCCTATCCC
605 G-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* ** * *
2744688 TCATCAATCCTCGAGAACTCACACCCTTTTAAAGAGTATTTGAGATTTTATAGGTTTGCTGCCAG
669 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * ** * * *
2744753 TAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGATGTCAAAATCCTGTATACTTCG
734 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* * * *
2744818 AGTTCTTAGCTGAATGTTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGG
799 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
2744883 GGCCAAAACTCATTCTGAAAAAATTTTTAAA
864 GGCCAAAACTCCTTCTGAAAAAATTTTAAAA
2744914 AAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
1 AAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
2744978 AACATCACATCAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
65 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* **
2745043 GGCAAAAATATGAAGATACGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
130 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * ** * * * *
2745108 GCCTCTCTGACCGGCGTAGTGCCTGCCTGCCCCCTCGTTTCGTTGGTTGGCTTACGCATACGAAA
195 GCCTCTCTGGCC-GCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *** * ** *
2745173 TTCATTCCCAATCTAAGATCGGATCAGATTGAGGGTTGCGGT-AGCAAGATCAACAGCACGCAAG
259 TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAAG
* * ** * * * *
2745237 GGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCTTCTGGGCGGCTAAGTGCCCGCACG---
324 GGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
2745299 G-TT-GT---TT--CAT-GG--T--TG-G---A----CA---TAAGCATACAGAGTTCATTCCCA
389 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * *
2745341 GTGTAAGGTC-GAACCGGACCGAAGGTTGCGGGTGTACATGCTGGGCACGAGCATTTGCTGGTGC
454 GTGTAAGATCAG-ACAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * *
2745405 CACATTTTTTTTTGCCTGGGGCACCA---CC---G--T--C-GGAGAACCTGACCGACGGCATTG
518 CGCATTTTTTTTTG-CTTGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTG
** * * *
2745459 GGGTTCCGATGATTAGAGGGG-CGGAGGGTGTGCACAAATGAATGGTGGCGACTGGGTGCCTGGT
582 GGGTTCCGGCGATT-GGGGGGACGG-GGGTGTGCGCACATG-AT-GT-GCGA-TGGGTG-CTGGT
* * *
2745523 ACTTCGGCCCTTATGTTGGCCTCCTATCCC-CAATCAAACCGTTGAGAACTCACACCCCCTTAAA
640 ACTT-GGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACC-TCGAGAACTCACACCCCCTTAAA
*
2745587 TGAGCACTTGAGATTTTTAACAGG-TTGCCTGCCAGTA-CCATT-AAGTGTCTGAAATGGGGACA
702 -GAGCATTTGAGA-TTTT-ACAGGTTTG-CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * **
2745649 -TTTTTTCCAATGGTCCAACCCACTAATCATCCACGGCTTAGGCCATCCACCTCTTGGCCGGCGT
763 CTTTTTTCAAATGGT-C-A--CA--AA--AT------CTT--G---T--A-CACTT---C-AAGT
* *** ** * * * *** * * *
2745713 AGTGCCGTCTGCCGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGAT
802 -TTTTAG-CTG--AAT--TTT--TTTG-T-GCAT-GCCA-A---A-AAAAAT-ACA----AGGAT
** * * * **
2745778 CATATCGGACCAAGTTTGGGGCCAAAACTCATTCTAAAAAAATTTTTGAA
846 CACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * *
2745828 AAATC-CTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGATTCATCTTGCCATGA
1 AAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
2745892 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCAT
65 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
2745957 GGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCACATCCC
130 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * * * *
2746022 GCCTCTCTGGTTGACGTGGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAG
195 GCCTCTCTGGCCG-CGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *** * * * * *
2746087 TTCATCCCCAATCTAAGATCAGACCGGATTGAGGGTTG-TG-CAGCAGGATCGGTAGCACATAGG
259 TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAAG
* * * * * * * ** * * *
2746150 GGGGACCCGACCGGTCCCCGGCTTGCGCATCCTGTCCCTTTGGTCGGCTGAATGTCTGTACGCTC
324 GGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
2746215 GTTCCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
389 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
2746280 GTGTAAGATCGGATC-GGACC-AAGGTTACGGGTGCACATGCTGGGCGCGTGCATGTGTTGGTGC
454 GTGTAAGATCAGA-CAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* *** ** * *
2746343 CACATTTTTTTCACCCAGGGCACCATCGCCGGAGCATCGA-TGGAG--CCTGACCGACGGGATTG
518 CGCATTTTTTTTTGCTTGGGCACCATCGCCGGAGCATC-ACTGGAGAACCTGACCGGCGGCATTG
* * * * *
2746405 CGGTTCCCGCAATTGGGGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
582 GGGTTCCGGCGATTGGGGGGAC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
2746470 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTG
646 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
2746535 AGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATG
711 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* ** * * * *
2746600 GTCACAAAATCCTGTACACTTTGAGTTTTTAGTTGAATTATTTTGTACATGCCAACAAAAATACA
776 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
**
2746665 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTATTTCTGAAAAAATTTTAAAA
841 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* ** * * *
2746719 AAATCTCGAACCTTAAAAAGTTTTGAAAATCCTGAAAAATAGAAAATGAGTCGTCTTGCTATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
2746784 ACTTCACATGAAGGCTTAATGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* ** *
2746849 GCAGAAATATGAAGATTTGCCTAAACCCACCTATGACCCTATCGATCCACGGCTTACGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
2746914 TCTCTCTGGTCGGCATAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
196 CCTCTCTGG-CCGCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * * * * *
2746979 TCATTCCCAGTCTAAGATCAGATCGAACTGATGGTTGC-GAT-AGTAGGATTGGTAGCACAC-A-
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAG-TCAGCAAGATCGGCAGCACACAAG
* *
2747040 ---G----GA--G------G----G-G-A-------CC-C--GAC--C-GATC-CCCGCACGCTC
324 GGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
2747070 CTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCCCA
389 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * * *
2747135 GTGTAAGATCGGATCA-GACTGAGGGTTGCAGGTGCACATGTTGGGCTTGGGCATGTACGGGTAC
454 GTGTAAGATCAGA-CAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** ** *
2747199 CGCATTTCTTTTTTCGCCCGGGGCACCATCGCCTGG-GCATCTTTGGAGAACCTGACCGGCGGCT
518 CGCATTT-TTTTTT-G-CTTGGGCACCATCGCC-GGAGCATCACTGGAGAACCTGACCGGCGGCA
* * *
2747263 TTGGGGTTTCGACGATTGGGGGCGAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
579 TTGGGGTTCCGGCGATTGGGGG-GA-CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
2747328 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCTTTCAAGAGCA
642 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
2747393 TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
707 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
2747458 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAATAAAAA
772 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * *
2747523 TACAAGGATCACGTCTACCAAGCTT-AGGCCAAAACTCCTTTTG-AAAAATTTTAAAA
837 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * * *
2747579 AAATCCCAAACCATAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
2747644 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATT
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
2747709 GCAGAAATATTAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTACGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
** * * * * * *
2747774 ATTCTCTGGCCGGCGTAGCGCCCGCCTGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATATGGAGT
196 CCTCTCTGGCC-GCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** * ** * * * ** *
2747839 TCATT-CTAGAGTAAGATCAGACCAGACTGAGGGTT--AGGT-TGCAGGATCGACAGTGCACAGG
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCA-GTCAGCAAGATCGGCAGCACACA-A
* * * * * * * *
2747900 GGGGGACCC-AGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGCCCGTAAGC
323 GGGGGACCCGA-TCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * *
2747964 TCGTTTCATGGGTTGATTTAGGCATACGCAGTCCATTCCCAGTCTAAGCATGCGGAGTTCATTCC
387 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * *
2748029 CAGTGTAAGATCAGACCGAATCGAGGGTTGTGGGTGCACATGCTTGGCTCGAGCATGTGCTGGTG
452 CAGTGTAAGATCAGACAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * ** * * *
2748094 CCGTA-TGTTTTTCGCCCGGGGCACCATCGTCGGAGCATCACTGAAGAACCTGACCGACGGCATT
517 CCGCATTTTTTTTTG-CTTGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATT
* ** * *
2748158 GGGGTTCCGACGATTAGGGGGCGGGGGGGGTATGCACACATGATGTGCGATGGGTGCTGGTACTT
581 GGGGTTCCGGCGATT-GGGGG-GACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
2748223 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
644 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
2748288 TGAGATTTTTCAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
709 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
2748353 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCGTGCCAAAAAAAATA
774 TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * * * *
2748418 CAAGGATCATGTCTACCAAGTTTTGGGCCAAAAATCCTTCTAAAAAAATTTTGAAA
839 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * *
2748474 AAATC-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-ATGGCGCCCTGCCATG
1 AAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA-GTCGTCTTGCCATG
* *
2748537 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGCT
64 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * * * **
2748602 TGGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGATGCCTTACGCATTT
129 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
2748667 CGCCTCTCTGGTCGGTGTAGTGGCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTAGGCATACCGA
194 CGCCTCTCTGG-CCGCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * * *
2748732 GTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTT-AAGGT-AG-AGGATCGGTA--ACATG
258 GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCA-GTCAGCAAGATCGGCAGCACA-C
* * * * * *
2748792 TAGTGGGGACCCGATCGAACCTCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCAC
321 AAG-GGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
2748857 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACAGAGTTCATT
385 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * *
2748922 CCTACTATAAGATCGGATC-GGATCGAGGGTTGTGGGTGCACATGCTGGGCTTGGGCATGTGCTG
450 CCCAGTGTAAGATCAGA-CAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTG
** * ** * ** * * *
2748986 GTGCTACATTTTTTTATCGCCCGAGGCACCATCGTCGGAGCATTGCCGAAGAACCTGATCGGCGG
514 GTGCCGCATTTTTTT-TTGCTTG-GGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGG
* * * *
2749051 CATTGGGGTTCTGACGATTGGGGGG-CAGGGGGTGCGCACACATGATGTGCGATGGGTGCTGGTA
577 CATTGGGGTTCCGGCGATTGGGGGGAC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* **
2749115 CTTGGCCCTTATATTGGCCCCTTATCCCTTGTC-AACCTCGAGAACTCACACCCCCTTAAAGAGC
641 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
2749179 ATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
706 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
** * **
2749244 GTATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGCATGCCAAAAAAA
771 AAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * * * * *
2749309 ATACAAGGATCACATCTACCATGTGTGGGGCCAGAACTCTTTCTGAGAAAATTTTAAAA
836 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * *
2749368 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGGCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
2749433 ACTTCACATGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATACAAATGGCATTGGCATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
2749498 GTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGCGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
2749563 CCTCTCTGGCCGACATAGTGGCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
196 CCTCTCTGGCCG-CGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * ** *** *
2749628 TCATTCCCAGTCTAAGAT-TGAACCAGACCGATGGTTGC-GACAGCAAGATCGATAGCATGTAGG
260 TCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACA-A
* * * * * * * * *
2749691 GGGGGACTCGACCGATCCCCAACTTGCGCATCCTACCCCTCTGGTCGACTGAGCACCCACACGCT
323 GGGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * * * *
2749756 TGTTTCGTGGGTTGACTTAGGCAGACGAAGTTTATTCCCAGTCTAAGCATATGGAGTTTAGT-CC
388 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
2749820 AGTGTAAGATCAGACCA-GACCGACGGTTGCGGGTGCGCATGCTAGGCT-GGGCATGTGCTGGTG
453 AGTGTAAGATCAGA-CAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
** ** * * *
2749883 -C-CATTTTTTTTTCGCCCGGGGCACCATCATCGGAGCATC-GTCAGAGAACCTGACCGACGGCA
517 CCGCATTTTTTTTT-G-CTTGGGCACCATCGCCGGAGCATCACT-GGAGAACCTGACCGGCGGCA
* * *
2749945 TTGGGGTTCCGGCGATTGGTGGGGTCAGGGGGGGCTATGCGCACATGATGTGCGATGGGTGATGG
579 TTGGGGTTCCGGCGATTGG-GGGG--A-CGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGG
* *
2750010 TACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCTCACCCCCTTAAAGA
639 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
2750075 GCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
704 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * * *
2750140 TCAAATGGTCAGAAAATCCTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTGCTTGCCAAGAA
769 TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * *
2750205 AAATACAAGGATCACATCAACCAAGTTTGGGGCCAAAAGTCCTTTTGAAAAAATTTTAAAA
834 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * * * *
2750266 AAATCCCGAACCGTAAAAGGTTTCAAAAATCGTCAAAAATAGAAGACAAGTCGTCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* ** *
2750331 ACTTCACATGAAGGCTTAAAGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
2750396 ACAGAAATATGAAGATGTGCCGAAACCCACCTGCCACCTTATCGATCCACGGCTTGTGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
2750461 TCTCTCTGGCCGGCATAGTGCCC-CCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
196 CCTCTCTGGCC-GCGTAGTGCCCGCC-CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * ** * * * *** *
2750525 TTCATTCCTAGTGC-AAGATCGGACCAGATCGAGGGTTGC-GACAATAGGATCGACAACATGTAG
259 TTCATTCCCAGT-CTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAA
* *
2750588 GGGGGACCC-AGTCGATCCCCGACTTGCGCAT-CTAGCCCCTCTGGCCGGCTGAGCGCCCGTACG
323 GGGGGACCCGA-TCGATCCCCGACTTGTGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
2750651 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
386 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * ** *
2750716 CTAGTGTAAGATCGGACCGGATCGAGGGTTATGGGTGCACATGCTAGGCTCGGGCATGTGCTGGT
451 CCAGTGTAAGATCAGACAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
* *
2750781 GCCGCATTTTTTTTTCGCTTGGGGCACAAT---C---G--T--C-GGAGAACCTGACCGACGGCA
516 GCCGCATTTTTTTTT-GCTT-GGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCA
* * * *
2750835 TTGGGGTTCCGACGATTGGGGGTGGGGCAGGGGGTGTGCACAAATGATGTGCGATGGGTGGGTGC
579 TTGGGGTTCCGGCGATT--GGG-GGGAC-GGGGGTGTGCGCACATGATGTGCGA----TGGGTGC
2750900 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
636 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
2750965 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATCAAAGTGTCTGAAATGGGGACACTT
701 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
2751030 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
766 TTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
2751095 CAAAAATACAAGGATCACGTCTACCTAGTGTGGGGCCAAAAATCCTT-TCGAAAAAATATTAAAA
831 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAA
* * * ** *
2751159 AAATCCCGAAGCATAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
2751224 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* ** *
2751289 GCAAAAATATGAAGATGTATCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
2751354 CCTCTCTGGCCAGAGTAGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACCGAGT
196 CCTCTCTGGCC-GCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * *
2751419 TCATTCCCAGTCTAAGATCGGACCAGA-TGAGGGTTG-TGACAGC---AT--GCAG-------GG
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAAGG
* ** * * * * * *
2751470 GAGGACCCGGTCGATCCGTGGCTTGCGCATCCTGCCCCTCTAGTCAGCTGAGCTCCCGCACGCTC
325 G-GGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
2751535 GTTTCGTGGGTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCA
389 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
2751600 GTGTAAGATC-GATCTGGACCTAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCTCGTGC
454 GTGTAAGATCAGA-CAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * *
2751664 CGTATTTTTTTTCGCCTGGGGCACCAT---C---G--T--C-GGAGAACCTGACCGACGACATCG
518 CGCATTTTTTTTTG-CTTGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTG
* * *
2751718 GGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGT
582 GGGTTCCGGCGATTGGGGGGAC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
2751783 CCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTG
646 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
2751848 AGATTTTACAAGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
711 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
** * *
2751913 GTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTATGCATGCCAAAAAAAATAC-
776 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* *
2751977 AGGTATCACGTCTACCAAGTTTGGGACCAAAACTCGTTCTGAAAAAATTTTAAAA
841 AGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* ** *
2752032 AAATCCCGAACTATAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * **
2752097 ACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTAGAAGCCATAAAAACAGCATTGGCATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
2752162 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTACGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
2752227 CCTCTCTGGCCGGCATAGTGCCCGCCCGTCTGCTCGTCTCGTCGGTTGGCTTAGGCATACGGAGT
196 CCTCTCTGGCC-GCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * *
2752292 TCATTCCCGGTCTAAGATCAAACCGGATCGAGGGTTCCAG-CAGCAGGATCGGCAGCACGCAGGG
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAAGG
* * * * * *
2752356 GGGACCTGACCGATCCCC-AGCTTG-CCATCCTGCCCCTTTGGCCGGCTGAGCACCTGCACGCTC
325 GGGACCCGATCGATCCCCGA-CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
2752419 GTTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTCCCA
389 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
** * *
2752484 GTGTAAGATC-GATTCA-GACCGAGGGTTATGGGTGCACATACTAGGCTCGGGCATGTGCTGGTG
454 GTGTAAGATCAGA--CAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
2752547 CCGCATTTTTTTTCGCCTGAGGCACCATCGCCGGAGCATCA-TCGGAGAACCTGACCGGTGGCAT
517 CCGCATTTTTTTTTGCTTG-GGCACCATCGCCGGAGCATCACT-GGAGAACCTGACCGGCGGCAT
* * *
2752611 TGGGGTTCCGGCGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTGTGATGGCTG-TGGGTAC
580 TGGGGTTCCGGCGATT-GGGGG-GACGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTAC
* *
2752675 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAATGAGCA
642 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
2752740 TTTGAGATTTTACAGGTTTGCTGCCTGTAGCGATTAAAGTGTCTGAAATAGGGACACTTTTTTCA
707 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
2752805 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGGAAGCCAAAAAAAA
772 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
*
2752869 TACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
837 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * ** **
2752927 ACATCCCGAACTATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
2752992 ACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCAGG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
2753057 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
2753122 TCTCTCTGGCCGACGTAGTGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
196 CCTCTCTGGCCG-CGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * **
2753187 TCATTCCTAGTCTAAGATGAGACCGGATCAAGGGTTGCAGT-AGCAGGATTGGCAGCACGCGGGG
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACAC--AA
* * * * * * * *
2753251 GGGGGGCCCGATCGATCCCC-AGCTTGCGCATCCTGCCCCTTTGGCTGGTTGAGCACCTGTACGC
323 GGGGGACCCGATCGATCCCCGA-CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* ** * *
2753315 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAAAATTCATTCA
387 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *** * * *
2753380 CAGTGTAACATC-GATTC-GGATCGAGGGTTGCAAATGCACATACTAGGCTCGGGCATCTGCTGG
452 CAGTGTAAGATCAGA--CAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * *
2753443 TGCCGCATTTTTTTTTTGCCTGAGGCACCATCGCCAGAGCATCGCCGGAGAACCTGATCGGTGGT
515 TGCCGCA-TTTTTTTTTGCTTG-GGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGC
* * * *
2753508 ATTGGGGTTCCGACGATTGGGGGCG-GGGGGGTGTGTGCACATGATGTGCGATGGCTG-TGGGTA
578 ATTGGGGTTCCGGCGATTGGGGG-GACGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTA
* * *
2753571 CATGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAATGAGC
641 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
2753635 ATTTGAGATTTTACAAGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
706 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
2753700 AAATGGTCACAAAATCCTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
771 AAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* *
2753765 ATACAA-TATCACGTCTACCAAGTTTGGGGGCAAAACTCCTTCTGAAAAAATTTTAAAA
836 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* **
2753823 AAATC-CTGAACTGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
1 AAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
2753887 AACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCAT
65 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
2753952 GGCAGAAATATGAAGATGTTCCTAAACCCACCTACCATCCTATCGATCCACAGCTTGCACATCCT
130 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
2754017 GCCTCTCTCGCCGGCGTAGTGCCCGCCCGCCTTCTCGTTTCGTCGGTTGGCTTAGGCATACGAAG
195 GCCTCTCTGGCC-GCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* *** * * * ** *
2754082 TTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTCCAGT-AGCAGGATTGGCAGCATGCAGG
259 TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAAG
* * * * * *
2754146 GGGGACCCGACCGATCCCC-AGCTTGCGCATCCTACCCCTTTGGTCGGCTGAGCGCCTGCACGCT
324 GGGGACCCGATCGATCCCCGA-CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
2754210 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T--G--TA---AG---A-T-CG
388 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* *
2754261 A-T-T----T------GGACCGAGGGTTGCGGGTGCACATACTAGGCTCGGGCATGTGCTGGTGC
453 AGTGTAAGATCAGACAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * ** ** *
2754314 CACCTTTTTTTTTCGCCCGAGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCGGTGGCATT
518 CGCATTTTTTTTT-GCTTG-GGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATT
* * * * *
2754379 GCGGTTCCGGCGATTGGGGGGTCGGGGGGTGTGCACACATGATGTGCGATGGCTGCAGGTACTTG
581 GGGGTTCCGGCGATTGGGGGGAC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
2754444 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAATGAGCATTT
645 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
2754509 GAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGCGTCTGAAATGGGGACGCTTTTTTCAAAT
710 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
2754574 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACTAAAAAAAATAC
775 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
2754639 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
840 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * *
2754694 AAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
2754759 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
2754824 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTAGCGCATCCTG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
2754889 CCTTTTTGGTCGGCGTAGTGCCCGCCTG-CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
196 CCTCTCTGG-CCGCGTAGTGCCCGCCCGCCT-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * ** *
2754953 TTCATTCCCAGTCTAAGAT-TGAATCGGACCAAGGGTTACGGT-AGCAAGATCGACAGCACGTAG
259 TTCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAA
* ** * *
2755016 GGGTGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCAGGCTGAGCGCCCGCATGC
323 GGG-GGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
2755081 TCGTTTCGTGCGTTGACTTAGGCATACGAAGTTCATTCCTAGTGTAAG-AT-C--AG---A---C
387 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
2755136 C---G---GA-C---CA--A---A-GGTTGCCGGTGCACATGCTGGGCTTGAGCATGTGCTGGTG
452 CAGTGTAAGATCAGACAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* ** ** * *
2755185 CTGCATTTTTTTTCACCCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGCGGCATT
517 CCGCATTTTTTTT-TGCTTGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATT
* * *
2755250 GGGGTTCCGGTGATTGGGGGG-CGGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTA
581 GGGGTTCCGGCGATTGGGGGGAC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
2755314 GCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
645 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
2755378 GGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
710 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
2755443 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG-CAAACAAAAATA
775 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATA
* * * *
2755507 CAAGGATCACATCTACCAGGTTTGGGGCAAAAACTCATTCTGAAAAAATTTTAAAA
839 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * ** * *
2755563 AAATCCCGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGTGTCATCTTGCCATGAA
1 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
2755628 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATG
66 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
2755693 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCG
131 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * **
2755758 CCTCTC-GACTGGCATAGTGCCCGCTCGTCTGCTCGTTTCGTCGGTTGGCTTTGGCATACAAAGT
196 CCTCTCTGGC-CGCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * *** ** **
2755822 TCATTCCCAGTCTAAGATCAGATCGAACCAAGGGTTATGGT-AGCAAGATCGATAGCATGCAGAG
260 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACA-AG
*
2755886 GGGGACCCGATCGATACCCGA
324 GGGGACCCGATCGATCCCCGA
2755907 TGTCATGAGC
Statistics
Matches: 18156, Mismatches: 3492, Indels: 2918
0.74 0.14 0.12
Matches are distributed among these distances:
855 86 0.00
856 40 0.00
857 68 0.00
858 35 0.00
859 110 0.01
860 256 0.01
861 81 0.00
862 255 0.01
863 1 0.00
864 13 0.00
865 27 0.00
866 602 0.03
867 41 0.00
868 241 0.01
869 476 0.03
870 235 0.01
871 401 0.02
872 241 0.01
873 651 0.04
874 18 0.00
875 12 0.00
876 5 0.00
877 40 0.00
878 49 0.00
879 8 0.00
880 58 0.00
881 183 0.01
882 29 0.00
883 53 0.00
884 256 0.01
885 551 0.03
886 593 0.03
887 473 0.03
888 510 0.03
889 774 0.04
890 136 0.01
891 313 0.02
892 175 0.01
893 1084 0.06
894 692 0.04
895 1690 0.09
896 1308 0.07
897 526 0.03
898 1016 0.06
899 157 0.01
900 285 0.02
901 44 0.00
902 269 0.01
903 8 0.00
904 140 0.01
905 7 0.00
906 8 0.00
907 5 0.00
908 7 0.00
909 4 0.00
910 1 0.00
911 2 0.00
912 4 0.00
913 80 0.00
914 313 0.02
915 9 0.00
916 4 0.00
917 13 0.00
918 11 0.00
919 1 0.00
920 1 0.00
921 3 0.00
922 2 0.00
923 15 0.00
924 3 0.00
925 6 0.00
926 10 0.00
927 4 0.00
928 2 0.00
929 6 0.00
930 1 0.00
931 7 0.00
932 10 0.00
933 5 0.00
934 4 0.00
935 3 0.00
936 15 0.00
937 23 0.00
938 79 0.00
939 73 0.00
940 39 0.00
941 13 0.00
942 14 0.00
943 9 0.00
944 7 0.00
945 10 0.00
946 42 0.00
947 3 0.00
948 8 0.00
949 4 0.00
950 4 0.00
951 7 0.00
952 12 0.00
953 19 0.00
954 47 0.00
955 7 0.00
956 10 0.00
957 10 0.00
958 20 0.00
959 20 0.00
960 31 0.00
961 26 0.00
962 23 0.00
963 19 0.00
964 24 0.00
965 17 0.00
966 14 0.00
967 27 0.00
968 10 0.00
969 11 0.00
970 13 0.00
971 31 0.00
972 25 0.00
973 26 0.00
974 28 0.00
975 21 0.00
976 22 0.00
977 19 0.00
978 7 0.00
979 9 0.00
980 8 0.00
981 2 0.00
983 16 0.00
984 3 0.00
985 16 0.00
986 16 0.00
987 11 0.00
988 15 0.00
989 8 0.00
990 2 0.00
991 5 0.00
992 7 0.00
993 12 0.00
994 13 0.00
995 13 0.00
996 7 0.00
997 8 0.00
998 8 0.00
999 20 0.00
1000 6 0.00
1001 6 0.00
1002 9 0.00
1004 5 0.00
1005 10 0.00
1006 10 0.00
1007 12 0.00
1008 6 0.00
1009 5 0.00
1010 12 0.00
1011 7 0.00
1012 1 0.00
1013 7 0.00
1014 12 0.00
1016 4 0.00
1017 7 0.00
1018 14 0.00
1019 14 0.00
1020 3 0.00
1021 2 0.00
1023 7 0.00
1024 56 0.00
1025 45 0.00
1026 70 0.00
1027 61 0.00
1028 76 0.00
1029 69 0.00
1030 214 0.01
1031 91 0.01
1032 128 0.01
1033 162 0.01
1034 101 0.01
1035 53 0.00
1036 45 0.00
1037 72 0.00
1038 205 0.01
1039 133 0.01
1040 150 0.01
1041 95 0.01
1042 168 0.01
1043 30 0.00
1044 69 0.00
1045 61 0.00
1046 40 0.00
1047 28 0.00
1048 24 0.00
1049 27 0.00
1050 22 0.00
1051 32 0.00
1052 40 0.00
1053 41 0.00
1054 59 0.00
1055 39 0.00
1056 31 0.00
1057 69 0.00
1058 38 0.00
1059 47 0.00
1060 26 0.00
1061 28 0.00
1062 44 0.00
1063 56 0.00
1064 28 0.00
1065 42 0.00
1066 17 0.00
1067 22 0.00
1068 37 0.00
1069 24 0.00
1070 28 0.00
1071 7 0.00
1072 15 0.00
1073 4 0.00
1074 26 0.00
1075 1 0.00
1076 6 0.00
1077 3 0.00
1078 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
CCTCTCTGGCCGCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTCAGCAAGATCGGCAGCACACAAGGG
GGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
GTAAGATCAGACAGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
ATTTTTTTTTGCTTGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGT
TCCGGCGATTGGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
Found at i:2735031 original size:26 final size:26
Alignment explanation
Indices: 2734979--2735031 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2734969 GTTGACTTAG
*
2734979 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
2735005 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2735031 G
1 G
2735032 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2735895 original size:26 final size:26
Alignment explanation
Indices: 2735866--2735918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2735856 GTTGACTTAG
*
2735866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2735892 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2735918 G
1 G
2735919 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2736781 original size:26 final size:26
Alignment explanation
Indices: 2736751--2736803 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2736741 GTTGACTTAG
*
2736751 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTGTAA
*
2736777 GCATACAGAGTTCATTGCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTGTAA
2736803 G
1 G
2736804 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTGTAA
Found at i:2737352 original size:889 final size:885
Alignment explanation
Indices: 2734101--2740436 Score: 7933
Period size: 889 Copynumber: 7.1 Consensus size: 885
2734091 GTTGACTTAG
* * * *
2734101 GCATACGGAGTTCATTCCCAGCGTAAGATC-GAACCGGACCGAGGGTTACGAGTGGACATGCTGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAG-ACCGGACCGAGGGTTGCGGGTGCACATGCTGG
** *
2734165 GCTCGGGCATGTGCTGCTGCCGCATCTTTTTTTCATCTGGGGCACCATCGCCAGAGCATCGTCGG
65 GCTC-GGCATGTGCTGCTGCCGCAT-TTTTTTTCGCCCGGGGCACCAT---C--AG---C--CGG
** * *
2734230 AGAACCTGACCTACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGGGGGGTTTTGCGCACA
118 AGAACCTGACCGGCGGCATTGGGGTTCTGACGATT-GGGGGGC-----GGGGGG-TGTGCGCACA
* * * * * ** *
2734295 TGGTGTGCGATGGGAGCTGGTATTTGGCCCTTCTAATGGTGCCCTATCCCTCATCAAACCTCAAG
176 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
2734360 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
241 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
2734425 CTGAAATGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCCAGTTTTTAGCTGAAT
306 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* ** *
2734490 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCTTAAACTCCTAC
371 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
2734555 TGAAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAAAAAACGA
436 TGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * * *
2734620 GTCATCTTGCCATGAAACTCCACATGAAGGCTTAAGGGGCCATCGTATGAATTTACAAGCCATAA
501 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
2734685 AAATGGCATTGGCATGGTAGAAATCTGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCA
566 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
2734750 CGGCTTGCGCATCCTGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTAGG
631 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTTATCGGTTGG
* * * *
2734815 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTAG-AGTTAGCAGGA
696 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCAG-CAGCAGGA
* ** * ** *
2734879 TTGGCAGCACGTAG-GGGGGAACCTAGCCGATCCCCGACTTACGCATCCTGCCCCTCTGGCCAGC
760 TCGGCAGCACGTAGAGGGGG-ACCCGGTCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGC
* * * *
2734943 TGAGCGCCCGTACGCACGTTTCCTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
824 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2735005 GCATACGGAGTTCATTCCCAATGTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* *** * *
2735070 CTCAGGCATGTGCTGGTGCTATATTTTTTTTTTGCCCGGGGCACCATCA-CCGGAGAACCTGATC
66 CTC-GGCATGTGCTGCTGCCGCA-TTTTTTTTCGCCCGGGGCACCATCAGCCGGAGAACCTGACC
* *
2735134 GGCGGCATTGGGGTTCTGACGATTGGGGGGTGGGGGGTGTGCACACATGATGTGCGATGGGTGCT
129 GGCGGCATTGGGGTTCTGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
2735199 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCTTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
2735264 GAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAACTGTCTAAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
2735329 GTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAA
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * * *
2735394 AAAAATACAGGGATCATGTCTACCAAATTTGGGGCCAAAAGTCCTTCTAAAAAAATTTTTCAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAA
* * *
2735459 AATCTCGAACCTTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
453 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* **
2735524 CTTCACATAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAG
518 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * * * *
2735589 TAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACAGCTTGCGCATCCTGT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * * *
2735654 CTCTCTGGCCGACATAGTACCCGCCCAC-CAGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGT
648 CTCTCTGGCCGGCGTAGTGCCCGCCCGCTC-GCTCGTTTTATCGGTTGGCTTAGGCATACGGAGT
* ** * * ** * *
2735718 TCATTCCCAGTCTAAGATCAGACTGGA-TCAAGGGTTGTGGTAGTAGGATCAACAGCACATAGTG
712 TCATTCCCAGTCTAAGATCAGACCGGACT-AAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAG
* * * * *
2735782 GGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCTTCTGGTCGGCTGAGCTCCCGCATGCTC
776 GGGGACCCGGTCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
2735847 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2735892 GCATACGAAGTTCATTCCCAGTGTAAGATCAGACTGGACCGTA-GGTTACGGGTGCACCTGTTAG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCG-AGGGTTGCGGGTGCACATGCTGG
* * * *
2735956 GCTCAGGCATTTGCTGCTGCCACATTTTTTTTCGCCCGGGGCACCATC-GTCGGAGAACTTGACC
65 GCTC-GGCATGTGCTGCTGCCGCATTTTTTTTCGCCCGGGGCACCATCAGCCGGAGAACCTGACC
* * *
2736020 GGCAGCATTGGGGTT-TCAGCGATTGGGGGG-GCGGGGGTGTGCGCACATGATGTGCGATGGATG
129 GGCGGCATTGGGGTTCTGA-CGATTGGGGGGCG-GGGGGTGTGCGCACATGATGTGCGATGGGTG
* * ** *
2736083 CTGGTACTTGGCCCTTATATTGGCCCCCTATACCACATCAAACCTTAAGAACTCACACCCCTTTA
192 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
2736148 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACT
257 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
2736213 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGAGCAAGCCA
322 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** *
2736278 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGTCCCAAAACTCCATCTGAAAAAATTTTAAAA
387 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * * *
2736343 AAATTCTGAATCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
452 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
2736408 ACTTCACATGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
517 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
2736473 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
2736538 CCTCTCTGGTCGGCGTAGTGCCCACCCACTCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGT
647 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGT
* * ** * ** * *
2736603 TCATTCTCTGTCTAAGATCAGACCAAACTGAGGGTTGCAGCAGCAAAATTGGTAGCACGTAGAGG
712 TCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGG
* * * * * * *
2736668 GGGACCCGGTCGATCCCTGATTTGTGCATCCTGCCTCTCTGGCCTGCTGAGAGCCCGCACACTTG
777 GGGACCCGGTCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *
2736733 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTTTAA
842 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2736777 GCATACAGAGTTCATTGCCAGTGTAAGATCGGACCAGACCGAGGGTGGCGGGTGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
2736842 CTCGTGCATGTGCTGCTGCCACATTTTTTTTCGCTCGGGGCACCAT-AGCCGGACAACCTGACCG
66 CTCG-GCATGTGCTGCTGCCGCATTTTTTTTCGCCCGGGGCACCATCAGCCGGAGAACCTGACCG
* * * *
2736906 ACGGCATTGGAGTTCTGACGATTAGGGGGGCAGTGAGGGGTTTGCGCACATGATGTGGGATGGGT
130 GCGGCATTGGGGTTCTGACGATT-GGGGGGC-G-G-GGGGTGTGCGCACATGATGTGCGATGGGT
* * * * *
2736971 GCGGGTACTTGGCCCTTATCTTGGCCTCTTATCCTTCATCAAACCTCGAGAACTCACACCCCCTT
191 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
2737036 AAAGAGCACTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACAC
256 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
2737101 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGTGCATGCT
321 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
2737166 AACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
386 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
*
2737231 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
451 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * * *
2737296 AACTTTACATGAAGACTTAAGCGACCATTGTATGAATTTAAAAGCCACAAAAATGGCATTGGTAT
516 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
2737361 GGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
581 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
2737426 GCCTCTCTGGCCGGCGTAGTGCCCGCCTGC-CTGCTCGTTTCT-TCGGTTGGCTTAGGCATACGG
646 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTC-GCTCGTTT-TATCGGTTGGCTTAGGCATACGG
* * * * * *
2737489 AGTTCATTCCCAGTCTAAGATCATACCGGAAC-AAGGGTTGCGGCAGCAAGATCAGCAGCATGCA
709 AGTTCATTCCCAGTCTAAGATCAGACCGG-ACTAAGGGTTGCAGCAGCAGGATCGGCAGCACGTA
* * * * * * *
2737553 G-GAGAGGACCTGGCCGATCCCTGGCTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
773 GAG-GGGGACCCGGTCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
2737617 GCTCGTTTCATGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2737666 GCATACGGAGTTCATTCCCAGTGTAAGATCAGATCGGACTGAGGGTTGTGGGTGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
2737731 CTCGAGCATATGCTGGTGCCGCATTTTTTTTCGCGCAGGGCACCATCGTCGGAGCGTCACCGGAG
66 CTCG-GCATGTGCTGCTGCCGCATTTTTTTTCGCCCGGGGCACCA---TC--A--G---CCGGAG
* * * * *
2737796 AACCTGACTGGCAGCATTGGGGTT-TCGGCGATTGGGGAGGCGGGTGGTGTGCGCTCATGATGTG
120 AACCTGACCGGCGGCATTGGGGTTCT-GACGATTGGGG-GGCGGGGGGTGTGCGCACATGATGTG
* *
2737860 CGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCACCAAACCAT-GAGAACTCA
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCA
* *
2737924 CACCCCCCTTAAAGAGCATTTGATATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
247 CA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
2737989 ATGGGGACACTTTTTTCAAATGGCCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTCTTT
311 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * **
2738054 TGTGCATGCCAAAAAAAATACAAGGATCACGACTACCAAGTTTGGGTCTTAAACTCCTTCTGAAA
376 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * * * * *
2738119 AAATTTTTAAAAAATCCCAAACCATAAAAAGTTTCCAAAATCATGAAAAATAGAAAATGGGTCGT
441 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
2738184 CTTGCCATGAAACTTCACATGAACGCTTAAAGGACCATTGTATGAATTTACAAACCATAAAAATG
506 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
2738249 GCATTGGGATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCC
571 GC------ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * ** *
2738314 ACGGCTTGCACATCCCGCCTCTTTGACCAGCGTAGTGCCCG--C-C-CGCTCGTTTCGTCGGTCG
630 ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTTATCGGTTG
* * * * *
2738375 GTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGCAGTAGTAGGA
695 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCAGCAGCAGGA
* ** * * *
2738440 TCGGTAGCACACAAAGGGGGACCCAGTCGATCCCCTG-CTTGTGCATCATGCCCCTCTGGCCGGC
760 TCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCC-GACTTGTGCATCCTGCCCCTCTGGCCGGC
* *** *
2738504 TGAGCACTTACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
824 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
2738566 ACATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGACAGTTGTGCGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
2738631 CTCAGGCAGGTACTACTGCTGCA-TTTTTTTCGCCCTGGGCACCATCACCGGAGCATCATCGAAG
66 CTC-GGCATGTGCTGCTGCCGCATTTTTTTTCGCCCGGGGCACCAT---C--AG---C--CGGAG
* * * ** *
2738695 AACCTGACCGGTGGCATTGAGGTTCCGGTGATTGGGGGGC---GGGTGTGCGCACATGATGTACG
120 AACCTGACCGGCGGCATTGGGGTTCTGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
* * * * *
2738757 ATGGGTACTGGTACTTGGCCGTTATATTGGCCCCCCCTATCCCTCATCAAAACTCAAGAACTTAC
185 ATGGGTGCTGGTACTTGGCCCTTATATTGG--CCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2738822 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTGAATT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * ** * *
2738887 GGGGACACTTTTTTCAAATGGTCACAAAATCATGTACAATAAGAGTTTTTAGGTGAATTTTTTTA
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2738952 TGCATGCCGACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
378 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* *
2739017 ATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
443 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
2739082 TGCCATTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
2739147 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTTCCACCCTGTCGATCCACGGCTTG
573 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
2739212 CGCATCCCACCTCTCTGCCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCAGTTG
638 CGCATCCCGCCTCTCTGGCCGGCGTAGT----GCCCGCCCGCTCGCTCG-T--TTT-ATCGGTTG
** * * *
2739277 GCTTAGGCATAAAGAGTTTATTCCCAGTTTAAGACCAGACCGGAC-AGAGGGTTGCAGCAGCAGG
695 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTA-AGGGTTGCAGCAGCAGG
* * * *
2739341 ATCGGCAGCATGCAGAGGGGGACACGGTCGATCCCCGACTTGTGCATCCTGCCCTTCTGGCCGGC
759 ATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGC
* * * *
2739406 TGAGTGCCCGCACGCTCTTTTCGTAGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
824 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
2739468 GCATACAGAGTTCATTCCCAGTGTAAGATCGGACAGGACCGAGGGTTGCGGGTGCACATACTGAA
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * ** * *
2739533 CTCGAGCATGTGGTGGTGCCGTATTTTTTTTCGCCCGAGGTGCCATC-GTCGGAGAACCTAACCG
66 CTCG-GCATGTGCTGCTGCCGCATTTTTTTTCGCCCGGGGCACCATCAGCCGGAGAACCTGACCG
* * * ** *
2739597 GCGGCATTGGGGTTCCGGCGATTGGGGGGGCGAGGGGGAGTGCGCACATGATGTTTGTTGGGTGC
130 GCGGCATTGGGGTTCTGACGATT-GGGGGGCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
2739662 TGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGACAACTCACACCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
2739727 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAATGGGGATACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
2739792 TTTTCAAATGGTCAC-AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGTGCATGCC-
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCA
* * *
2739855 AACAAAATAC-AGGATCACGTCCACCCAAGTTTGCGGCCAAAA-TCCTTCTGAAAAAATTTTAAA
387 AAAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * ** *
2739918 AAAATCCTGAACCATAAAACGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
451 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
2739983 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGAT
516 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
2740048 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACAGCTTGCGCATCCC
581 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* ** *
2740113 GCCTCT-TAGCCAACGTAGTGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
646 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAG
* * ** * *
2740177 TTCATTCCCAGTCTAAGATC-GAACCGGA-TCGAGGCTTGTGGCAGCAAGATCGACAGCACGT--
711 TTCATTCCCAGTCTAAGATCAG-ACCGGACT-AAGGGTTGCAGCAGCAGGATCGGCAGCACGTAG
* * * *
2740238 AGGGGGACCC-GACTGATCCCCGAC-T-T--A-CCT----ATCTGGCCGGCTGAGTGCCCGCATG
774 AGGGGGACCCGGTC-GATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
2740293 CTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
838 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
2740341 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCAAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
2740406 CTCGGGTATATGCTGGTGTCGCATTTTTTTT
66 CTC-GGCATGTGCTGCTGCCGCATTTTTTTT
2740437 TTCACCCGAG
Statistics
Matches: 4738, Mismatches: 606, Indels: 207
0.85 0.11 0.04
Matches are distributed among these distances:
873 150 0.03
874 1 0.00
877 3 0.00
878 1 0.00
880 1 0.00
881 3 0.00
882 19 0.00
883 1 0.00
884 68 0.01
885 512 0.11
886 583 0.12
887 459 0.10
888 26 0.01
889 734 0.15
890 89 0.02
892 50 0.01
893 259 0.05
894 56 0.01
895 177 0.04
896 298 0.06
897 152 0.03
898 301 0.06
899 67 0.01
900 279 0.06
901 11 0.00
902 234 0.05
903 18 0.00
904 184 0.04
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGCATGTGCTGCTGCCGCATTTTTTTTCGCCCGGGGCACCATCAGCCGGAGAACCTGACCGG
CGGCATTGGGGTTCTGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
TCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGA
CCCGGTCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2737670 original size:26 final size:26
Alignment explanation
Indices: 2737640--2737692 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2737630 GTTTACTTAG
2737640 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2737666 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2737692 G
1 G
2737693 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2741541 original size:26 final size:26
Alignment explanation
Indices: 2741505--2741557 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2741495 GTTGACTTAG
2741505 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
2741531 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
2741557 G
1 G
2741558 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:2741951 original size:31 final size:31
Alignment explanation
Indices: 2741908--2741990 Score: 139
Period size: 31 Copynumber: 2.7 Consensus size: 31
2741898 AGCTGAATTT
* *
2741908 TTTTCTGCATGCCAAAAAAAATACAAGTTTG
1 TTTTGTGCATGCCAAAAAAAACACAAGTTTG
*
2741939 TTTTGTGCATGCCAAAAAAAACCCAAGTTTG
1 TTTTGTGCATGCCAAAAAAAACACAAGTTTG
2741970 TTTTGTGCATGCCAAAAAAAA
1 TTTTGTGCATGCCAAAAAAAA
2741991 AATACAAGGA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (31 bp):
TTTTGTGCATGCCAAAAAAAACACAAGTTTG
Found at i:2742511 original size:26 final size:26
Alignment explanation
Indices: 2742459--2742511 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2742449 GTTGACTTAG
* *
2742459 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGGCTAA
*
2742485 GCATACAGAGTTCATTCCCAGGGTAA
1 GCATACAGAGTTCATTCCCAGGCTAA
2742511 G
1 G
2742512 ATTAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGGCTAA
Found at i:2743469 original size:19 final size:19
Alignment explanation
Indices: 2743445--2743483 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
2743435 AGCACGCAGG
2743445 GGCGACCCGACCAATCCCC
1 GGCGACCCGACCAATCCCC
2743464 GGCGACCCGACCAATCCCC
1 GGCGACCCGACCAATCCCC
2743483 G
1 G
2743484 ACTTGTGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.51, G:0.23, T:0.05
Consensus pattern (19 bp):
GGCGACCCGACCAATCCCC
Found at i:2744917 original size:898 final size:896
Alignment explanation
Indices: 2742485--2755843 Score: 15762
Period size: 898 Copynumber: 15.0 Consensus size: 896
2742475 CCCAGTCTAA
* ** * * * * * *
2742485 GCATACAGAGTTCATTCCCAGGGTAAGATTAGATCAGATCAAGGGTTGTGGCAGCAGGTTCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
2742550 GCACGCAGGGGGGAACCCGACCGATCCCCAGCTTGTGCATCCTGCCCCTCTGGTCGGCTAAGCGC
66 GCACGCAGGGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * * * * *
2742615 CAGCACGTTCATTTCGTGGGTTGACTTAGGCGTACAGAGTTCATTCCCAGTCTAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAG
* * * *
2742680 TTCTTTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACAGGTGCACATGCTAGGCTCGAGCATG
195 TTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATG
* * * * * *
2742745 TGCAGGTGCTGCA-TTTTTTTTTTGCCTGGGCCACCATCG-TCGGAGCATCGCCAGAGAACCTGA
260 TGCTGGTGC--CACTTTTTTTTTCGCCCGGGGCACCATCGCT-GGAGCATCGTCGGAGAACCTGA
** *
2742808 CCGGCGGCATTGGGGTTCCGGTGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGT
322 CCGGCGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
2742873 GCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTTGAGAACTCACACGCCCTT
387 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * * * *
2742938 AAGGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAGGTCTCTAAAATGGGGACAC
452 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
2743003 TTTTTTCAAATGGTCGCAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
517 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
2743068 AACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCAAAAACTCTTTGTGAAAAAATTTTAAA
582 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * *
2743133 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGAGTCATCTTGCCATGA
647 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
2743198 AACTTCACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
712 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
2743263 GGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACGGCTTGCGCATCCC
777 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
2743328 GCCTCTTTGGCCGACGTAGTGCCCGCCCGCTCGCTCGTATCGTTGGTGGGCTTAG
842 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * * * * **
2743383 GCATACAGAGTTCATTCCCAATCTAAGATTGGACCTGACCGAGGGTTGCTGCAGCACGCAGGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCA-GGATCGGC
* ** * * * * * * *
2743448 -GACCCGACCAATCCCCGGCGACCCGACCAATCCCCGACTTGTGCATCCTACCCTTCTGGCCGGT
65 AG-CACG--C-A---GGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
2743512 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG----TT--CA---T-----
123 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
2743563 T-C------C--T---AGTGTAAGATCGGACCGGATCGAGGGTTACGGGTGCACATGCTAGGCTC
188 TACAGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTC
* * * * * * *
2743616 GGGTATCTGTTGGTGTCGTATTTTTTTTTTCG---AGGGCACCATCG-TCAGAGCATCGTCGGAG
253 GGGCATGTGCTGGTG-C-CACTTTTTTTTTCGCCCGGGGCACCATCGCT-GGAGCATCGTCGGAG
* * * * *
2743677 AACCTGACCGACGGCGTTGGGGTTCCGACAATTGGGGGTGCGGCGGGGGGGGTGTGTGCACATGG
315 AACCTGACCGGCGGCATTGGGGTTCCGACGATT--GGG-G-GG-GGGGGGGGTGTGCGCACATGA
* *
2743742 TGTGCGATGGGTGCTGGTACTTGGCCCCTTATATTGGCCCCCTATTCCTCATCAAAGCTCGAGAA
375 TGTGCGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
2743807 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCGGTAGCCATTAAAGTGTTT
439 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
2743872 AAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTT
504 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
2743937 TTTTATGAATGCCACCAAAAATACAAGGATCATGTCTACAAAGTGTGGGGCCAAAACTCCTTCTG
569 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* * * *
2744002 AAAAAATTTTAAAAAAATCTCGAACCATTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
634 AAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
2744067 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAA
699 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
2744132 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCGCG
764 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * * *
2744197 ACTTGCGCATCCTGCCACTCTGGCCGGCGTAGTGCCCGCTCGCCCTCTCGTTTCGGCGATAGGCT
829 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
2744262 TAG
894 TAG
* * * * *
2744265 GCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCAGATTGAGGATTGTGGCAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
* ** * *
2744330 GCACGCAGGGGGG-CCCCAGCCGATCTTCGGCTTGCACATCCTACCCCTCTGGCCGGCTGAGCGC
66 GCACGCAGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * * *
2744394 CCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACAAAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAG
* * * * *
2744459 TTCATTCCCAGCGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTAGAGCATG
195 TTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATG
* * *
2744524 TGCTGGTGCCACTTTTTTTTTTGCCCGGGGCACCATTGCTGGAGCATCATCGGAGAACCTGACCG
260 TGCTGGTGCCACTTTTTTTTTCGCCCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCG
* *
2744589 GCAGCATTGGGGTTCCGACAATAGTGGGGCGGGGGGGAGGGTGTGCGCACATGATGTGCGATGGG
325 GCGGCATTGGGGTTCCGACGAT--TGGGG-GGGGGGG-GGGTGTGCGCACATGATGTGCGATGGG
* * **
2744654 TGCTAGTACTT-GCCCTTATATT-GCCCCCTATCCCTCATCAATCCTCGAGAACTCACACCCTTT
386 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
2744717 TAAAGAGTATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATA
451 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* ** * * *
2744782 CTTTTTTCAAATGATGTCAAAATCCTGTATACTTCGAGTTCTTAGCTGAATGTTTTTGTGCATGC
516 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
2744847 CAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCTGAAAAAATTTTTA
581 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* *
2744912 AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
646 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
2744977 AAACATCACATCAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
711 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* **
2745042 TGGCAAAAATATGAAGATACGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
776 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
2745107 CGCCTCTCTGACCGGCGTAGTGCCTGCCTGCCCCCTCGTTTCGTTGGTTGGCTTAC
841 CGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * * **
2745163 GCATACGAAATTCATTCCCAATCTAAGATCGGATCAGATTGAGGGTTGCGGTAGCAAGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
2745228 GCACGCAAGGGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCTTCTGGGCGGCTAAGTGCC
66 GCACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
2745293 CGCACG---G-TT-GT---TT--CAT-GG--T--TG-G---A----CA---TAAGCATACAGAGT
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGT
* * * * * * * *
2745332 TCATTCCCAGTGTAAGGTCGAACCGGACCGAAGGTTGCGGGTGTACATGCTGGGCACGAGCATTT
196 TCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGT
*
2745397 GCTGGTGCCACATTTTTTTTT-GCCTGGGG---CA-C-C---A-C--CGTCGGAGAACCTGACCG
261 GCTGGTGCCAC-TTTTTTTTTCGCCCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCG
* * * * * * * *
2745450 ACGGCATTGGGGTTCCGATGATTAGAGGGGCGGAGGGTGTGCACAAATGAATGGTGGCGACTGGG
325 GCGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGGTGTGCGCACATG-AT-GT-GCGA-TGGG
* * *
2745515 TGCCTGGTACTTCGGCCCTTATGTTGGCCTCCTATCCC-CAATCAAACCGTTGAGAACTCACACC
386 TG-CTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACC-TCGAGAACTCACACC
*
2745579 CCCTTAAATGAGCACTTGAGATTTTTAACAGG-TTGCCTGCCAGTA-CCATT-AAGTGTCTGAAA
447 CCCTTAAA-GAGCATTTGAGA-TTTT-ACAGGTTTG-CTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2745641 TGGGGACA-TTTTTTCCAATGGTCCAACCCACTAATCATCCACGGCTTAGGCCATCCACCTCTTG
508 TGGGGACACTTTTTTCAAATGGT-C-A--CA--AA--AT---C--C-T--G---T--A-CACTT-
* * *** ** * * * ** * * *
2745705 GCCGGCGTAGTGCCGTCTGCCGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCA-
550 --C-GAGT-TTTTAG-CTG--AAT--TTT--TTTG-T-GCAT-GCCA-AC--A--AAAATACAAG
* * * * * **
2745769 GTTTAAGATCATATCGGACCAAGTTTGGGGCCAAAACTCATTCTAAAAAAATTTTTGAAAAATCC
596 GATCACG-TC---T---ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCC
** * * *
2745834 TAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGATTCATCTTGCCATGAAACTTCA
654 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
2745899 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGGCAGAA
719 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* *
2745964 ATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTC
784 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
** * * *
2746029 TGGTTGACGTGGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
849 TGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
2746077 GCATACAGAGTTCATCCCCAATCTAAGATCAGACCGGATTGAGGGTTG-TGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
** * * * * ** *
2746141 GCACATAGGGGGGACCCGACCGGTCCCCGGCTTGCGCATCCTGTCCCTTTGGTCGGCTGAATGTC
66 GCACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * * * * *
2746206 TGTACGCTCGTTCCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGT
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGT
* * * * * *
2746271 TCATTCCCAGTGTAAGATCGGATCGGACC-AAGGTTACGGGTGCACATGCTGGGCGCGTGCATGT
196 TCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGT
* * * * *
2746335 GTTGGTGCCAC-ATTTTTTTCACCCAGGGCACCATCGCCGGAGCATCGAT-GGAG--CCTGACCG
261 GCTGGTGCCACTTTTTTTTTCGCCCGGGGCACCATCGCTGGAGCATCG-TCGGAGAACCTGACCG
* * * * * *
2746396 ACGGGATTGCGGTTCCCG-CAATTGGGGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGC
325 GCGGCATTGGGGTT-CCGACGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
2746460 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAA
389 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
2746525 AGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTT
454 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
2746590 TTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGTTGAATTATTTTGTACATGCCAA
519 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
**
2746655 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTATTTCTGAAAAAATTTTAAAAA
584 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * ** * * *
2746720 AATCTCGAACCTTAAAAAGTTTTGAAAATCCTGAAAAATAGAAAATGAGTCGTCTTGCTATGAAA
649 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
2746785 CTTCACATGAAGGCTTAATGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCATGG
714 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* ** * *
2746850 CAGAAATATGAAGATTTGCCTAAACCCACCTATGACCCTATCGATCCACGGCTTACGCATCCCGT
779 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * *
2746915 CTCTCTGGTCGGCATAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
844 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * * *
2746968 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACTGATGGTTGCGATAGTAGGATTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATCGGC
*
2747032 AGCACACAGGAGGGGACCCGACCGAT--CC--C---CGCA---------------C-GCT-----
65 AGCACGCAGG-GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* *
2747069 --------C-C-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATACGGA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
* * * * * * *
2747124 GTTCATTCCCAGTGTAAGATCGGATCAGACTGAGGGTTGCAGGTGCACATGTTGGGCTTGGGCAT
194 GTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
* * * * * *
2747189 GTACGGGTACCGCATTTCTTTTTTCGCCCGGGGCACCATCGCCTGG-GCATCTTTGGAGAACCTG
259 GTGCTGGTGCCAC-TTT-TTTTTTCGCCCGGGGCACCATCG-CTGGAGCATCGTCGGAGAACCTG
* * *
2747253 ACCGGCGGCTTTGGGGTTTCGACGATTGGGGGCGAGGGGGGGTGTGCGCACATGATGTGCGATGG
321 ACCGGCGGCATTGGGGTTCCGACGATTGGGGG-GGGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
2747318 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCT
385 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
2747383 TTCAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
450 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
2747448 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAG
515 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
2747513 CCAATAAAAATACAAGGATCACGTCTACCAAGCTT-AGGCCAAAACTCCTTTTG-AAAAATTTTA
580 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * * * *
2747576 AAAAAATCCCAAACCATAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
645 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
2747641 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
710 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
2747706 ATTGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTACGCATC
775 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * * * *
2747771 CCGATTCTCTGGCCGGCGTAGCGCCCGCCTGCCCGCTTGTTTCGTTGGTTGGCTTAG
840 CCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * ** *
2747828 GCATATGGAGTTCATT-CTAGAGTAAGATCAGACCAGA-CTGAGGGTT-AGGTTGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATCGGC
** * * * * * *
2747890 AGTGCACAGGGGGGGACCC-AGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGC
65 AGCACGCA-GGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* * * * * * * *
2747954 GCCCGTAAGCTCGTTTCATGGGTTGATTTAGGCATACGCAGTCCATTCCCAGTCTAAGCATGCGG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
* * * * * *
2748019 AGTTCATTCCCAGTGTAAGATCAGACCGAATCGAGGGTTGTGGGTGCACATGCTTGGCTCGAGCA
193 AGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCA
* * * * *
2748084 TGTGCTGGTGCC-GTATGTTTTTCGCCCGGGGCACCATCG-TCGGAGCATC-ACTGAAGAACCTG
258 TGTGCTGGTGCCACTTTTTTTTTCGCCCGGGGCACCATCGCT-GGAGCATCGTC-GGAGAACCTG
* * * *
2748146 ACCGACGGCATTGGGGTTCCGACGATTAGGGGGCGGGGGGGGTATGCACACATGATGTGCGATGG
321 ACCGGCGGCATTGGGGTTCCGACGATT-GGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGG
2748211 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
385 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
2748276 TTAAAGAGCATTTGAGATTTTTCAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
450 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
2748341 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCGTG
515 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
2748406 CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAAATCCTTCTAAAAAAATTTTG
580 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * * *
2748471 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-ATGGCGCCCTGCCA
645 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA-GTCGTCTTGCCA
*
2748535 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGG
709 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* ** * * * *
2748600 CTTGGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGATGCCTTACGCAT
774 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * * * * *
2748665 TTCGCCTCTCTGGTCGGTGTAGTGGCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTAG
839 CCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * *
2748723 GCATACCGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTAAGGTAG-AGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * *
2748787 ACATGTAGTGGGGACCCGATCGAACCTCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCC
66 GCACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
*
2748852 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACAGAGT
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGT
* * * * * * * *
2748917 TCATTCCTACTATAAGATCGGATCGGATCGAGGGTTGTGGGTGCACATGCTGGGCTTGGGCATGT
196 TCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGT
* * * * * * *
2748982 GCTGGTGCTACATTTTTTTATCGCCCGAGGCACCATCG-TCGGAGCATTGCCGAAGAACCTGATC
261 GCTGGTGCCAC-TTTTTTTTTCGCCCGGGGCACCATCGCT-GGAGCATCGTCGGAGAACCTGACC
* ** * *
2749046 GGCGGCATTGGGGTTCTGACGATT-GGGGGGCAGGGGGTGCGCACACATGATGTGCGATGGGTGC
324 GGCGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* **
2749110 TGGTACTTGGCCCTTATATTGGCCCCTTATCCCTTGTC-AACCTCGAGAACTCACACCCCCTTAA
389 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
2749174 AGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
454 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
** * **
2749239 TTTTCGTATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGCATGCCAA
519 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * * * *
2749304 AAAAAATACAAGGATCACATCTACCATGTGTGGGGCCAGAACTCTTTCTGAGAAAATTTTAAAAA
584 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* *
2749369 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGGCATGAAA
649 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
2749434 CTTCACATGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATACAAATGGCATTGGCATGG
714 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * *
2749499 TAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGCGCATCCCGC
779 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * *
2749564 CTCTCTGGCCGACATAGTGGCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
844 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * **
2749617 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGACCGATGGTTGCGACAGCAAGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCGGCAGCAGGATCGGC
* * * ** * * * *
2749681 AGCATGTAGGGGGGGACTCGACCGATCCCCAACTTGCGCATCCTACCCCTCTGGTCGACTGAGCA
65 AGCACGCA-GGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * * * * **
2749746 CCCACACGCTTGTTTCGTGGGTTGACTTAGGCAGACGAAGTTTATTCCCAGTCTAAGCATATGGA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
* * * * * *
2749811 GTTTAGT-CCAGTGTAAGATCAGACCAGACCGACGGTTGCGGGTGCGCATGCTAGGCT-GGGCAT
194 GTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
* *
2749874 GTGCTGGTGCCA-TTTTTTTTTCGCCCGGGGCACCATC-ATCGGAGCATCGTCAGAGAACCTGAC
259 GTGCTGGTGCCACTTTTTTTTTCGCCCGGGGCACCATCGCT-GGAGCATCGTCGGAGAACCTGAC
* * * *
2749937 CGACGGCATTGGGGTTCCGGCGATTGGTGGGGTCAGGGGGGGCTATGCGCACATGATGTGCGATG
323 CGGCGGCATTGGGGTTCCGACGATTGG-GGGG---GGGGGGGGTGTGCGCACATGATGTGCGATG
* * *
2750002 GGTGATGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCTCACCCC
384 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
2750067 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
449 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
2750132 CACTTTTTTCAAATGGTCAGAAAATCCTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTGCTT
514 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
2750197 GCCAAGAAAAATACAAGGATCACATCAACCAAGTTTGGGGCCAAAAGTCCTTTTGAAAAAATTTT
579 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
* * * *
2750262 AAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCGTCAAAAATAGAAGACAAGTCGTCTTGCCA
644 AAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* **
2750327 TGAAACTTCACATGAAGGCTTAAAGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
709 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
2750392 CACGACAGAAATATGAAGATGTGCCGAAACCCACCTGCCACCTTATCGATCCACGGCTTGTGCAT
774 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
2750457 CCCGTCTCTCTGGCCGGCATAGTGCCC-CCTCGCCCGCTCGTTTCGTCGGTTGGCTTAG
839 CCCGCCTCTCTGGCCGGCGTAGTGCCCGCC-CGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** *
2750515 GCATACGGAGTTCATTCCTAGTGC-AAGATCGGACCAGATCGAGGGTTGCGACAATAGGATCGAC
1 GCATACGGAGTTCATTCCCAGT-CTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGC
* * * * *
2750579 AACATGTAGGGGGGACCC-AGTCGATCCCCGACTTGCGCAT-CTAGCCCCTCTGGCCGGCTGAGC
65 AGCACGCAGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGC
* **
2750642 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
* * **
2750707 AGTTCATTCCTAGTGTAAGATCGGACCGGATCGAGGGTTATGGGTGCACATGCTAGGCTCGGGCA
193 AGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCA
* **
2750772 TGTGCTGGTGCCGCATTTTTTTTTCGCTTGGGG---CA---C---A--ATCGTCGGAGAACCTGA
258 TGTGCTGGTGCCAC-TTTTTTTTTCGCCCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGA
* * *
2750826 CCGACGGCATTGGGGTTCCGACGATTGGGGGTGGGGCAGGGGGTGTGCACAAATGATGTGCGATG
322 CCGGCGGCATTGGGGTTCCGACGATTGGGGG-GGGG--GGGGGTGTGCGCACATGATGTGCGA--
2750891 GGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
382 --TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2750956 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATCAAAGTGTCTGAAATG
445 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
2751021 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
510 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
2751086 GCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTGTGGGGCCAAAAATCCTT-TCGAAAAA
575 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAA
* * * * *
2751150 ATATTAAAAAAATCCCGAAGCATAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCT
639 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
2751215 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
704 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
2751280 ATTGGCATGGCAAAAATATGAAGATGTATCTAAACCCACCTACCACCCTATCGATCCACGGTTTG
769 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
2751345 CGCATCCCGCCTCTCTGGCCAGAGTAGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAG
834 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
2751408 GCATACCGAGTTCATTCCCAGTCTAAGATCGGACCAGAT-GAGGGTTG-TG-A-CAGCAT-----
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
* ** ** * * * *
2751464 GCA-G--GGGAGGACCCGGTCGATCCGTGGCTTGCGCATCCTGCCCCTCTAGTCAGCTGAGCTCC
66 GCACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
2751526 CGCACGCTCGTTTCGTGGGTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGCATA-AGGAG
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA-GAG
* * * * *
2751590 TTCATTCCCAGTGTAAGATC-GATCTGGACCTAGGGTTGTGGGTGCACATGCTGGGCTCGAGCAT
195 TTCATTCCCAGTGTAAGATCGGA-CCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
* * *
2751654 GTGCTCGTGCC-GTATTTTTTTTCGCCTGGGG---CA---C-----CATCGTCGGAGAACCTGAC
259 GTGCTGGTGCCACT-TTTTTTTTCGCCCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGAC
* * * *
2751707 CGACGACATCGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
323 CGGCGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
2751772 CTGGTACTTGTCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCAAACCCCCTTA
388 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
2751837 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACT
453 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
2751902 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTATGCATGCCA
518 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
2751967 AAAAAAATAC-AGGTATCACGTCTACCAAGTTTGGGACCAAAACTCGTTCTGAAAAAATTTTAAA
583 ACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
** **
2752031 AAAATCCCGAACTATAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
647 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * **
2752096 AACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTAGAAGCCATAAAAACAGCATTGGCAT
712 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
2752161 GGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTACGCATCCC
777 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
2752226 GCCTCTCTGGCCGGCATAGTGCCCGCCCGTCTGCTCGTCTCGTCGGTTGGCTTAG
842 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
2752281 GCATACGGAGTTCATTCCCGGTCTAAGATCAAACCGGATCGAGGGTTCCAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
2752346 GCACGCAGGGGGGACCTGACCGATCCCCAGCTTGC-CATCCTGCCCCTTTGGCCGGCTGAGCACC
66 GCACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * * *
2752410 TGCACGCTCGTTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC-GAAA
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AG
* * ** *
2752474 TTCATTCCCAGTGTAAGATC-GATTCAGACCGAGGGTTATGGGTGCACATACTAGGCTCGGGCAT
195 TTCATTCCCAGTGTAAGATCGGA-CCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
* * * * * *
2752538 GTGCTGGTGCCGCATTTTTTTTCGCCTGAGGCACCATCGCCGGAGCATCATCGGAGAACCTGACC
259 GTGCTGGTGCCACTTTTTTTTTCGCCCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACC
* * * * *
2752603 GGTGGCATTGGGGTTCCGGCGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTGTGATGGCTG
324 GGCGGCATTGGGGTTCCGACGATTGGGGGG-GGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
2752668 -TGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
388 CT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
2752732 AATGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCGATTAAAGTGTCTGAAATAGGGACAC
452 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
2752797 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGGAAGCC
517 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
2752861 AAAAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
582 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* ** *
2752926 AACATCCCGAACTATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
647 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
2752991 AACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCAG
712 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
2753056 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
777 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * **
2753121 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAG
842 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
2753176 GCATACAGAGTTCATTCCTAGTCTAAGATGAGACCGGATCAAGGGTTGCAGTAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * *
2753241 GCACGCGGGGGGGGGGCCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTTTGGCTGGTTGAGCA
66 GCACGC--AGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * * *
2753306 CCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAAA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
* * * * * *** *
2753371 ATTCATTCACAGTGTAACATC-GATTCGGATCGAGGGTTGCAAATGCACATACTAGGCTCGGGCA
194 GTTCATTCCCAGTGTAAGATCGGA-CCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCA
* * * * * ** *
2753435 TCTGCTGGTGCCGCATTTTTTTTTTGCCTGAGGCACCATCGCCAGAGCATCGCCGGAGAACCTGA
258 TGTGCTGGTGCCAC-TTTTTTTTTCGCCCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGA
* * * * * *
2753500 TCGGTGGTATTGGGGTTCCGACGATT-GGGGGCGGGGGGGTGTGTGCACATGATGTGCGATGGCT
322 CCGGCGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
2753564 G-TGGGTACATGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
387 GCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
2753627 TAATGAGCATTTGAGATTTTACAAGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACA
451 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
2753692 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGC
516 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
2753757 CAACAAAAATACAA-TATCACGTCTACCAAGTTTGGGGGCAAAACTCCTTCTGAAAAAATTTTAA
581 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* * *
2753821 AAAAATCCTGAACTGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
646 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
2753886 AAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCA
711 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
2753951 TGGCAGAAATATGAAGATGTTCCTAAACCCACCTACCATCCTATCGATCCACAGCTTGCACATCC
776 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * **
2754016 TGCCTCTCTCGCCGGCGTAGTGCCCGCCCGCCTTCTCGTTTCGTCGGTTGGCTTAG
841 CGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
2754072 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTCCAGTAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
2754137 GCATGCAGGGGGGACCCGACCGATCCCCAGCTTGCGCATCCTACCCCTTTGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
2754202 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T--G--T--A-AG-
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGT
* *
2754257 --A-T-CGA-T-T----T------GGACCGAGGGTTGCGGGTGCACATACTAGGCTCGGGCATGT
196 TCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGT
* * ** *
2754306 GCTGGTGCCACCTTTTTTTTTCGCCCGAGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCG
261 GCTGGTGCCA-CTTTTTTTTTCGCCCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCG
* * * ** * * *
2754371 GTGGCATTGCGGTTCCGGCGATTGGGGGGTCGGGGGGTGTGCACACATGATGTGCGATGGCTGCA
325 GCGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
2754436 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAT
390 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
2754501 GAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGCGTCTGAAATGGGGACGCTTT
455 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
2754566 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACTAAA
520 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
2754631 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
585 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
*
2754696 ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
650 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
2754761 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGGT
715 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
* * *
2754826 AGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTAGCGCATCCTGCC
780 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* * * * *
2754891 TTTTTGGTCGGCGTAGTGCCCGCCTGCTCGCTCGTTTCGTCGGTTGGCTTAG
845 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * * *
2754943 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAATCGGACCAAGGGTTACGGTAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
2755007 AGCACGTAGGGGTGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCAGGCTGAGCG
65 AGCACGCAGGGG-GGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* *
2755072 CCCGCATGCTCGTTTCGTGCGTTGAC-T-----TA--G-G--CA-T---A--C---G-----A-A
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
* * * * * * * *
2755111 GTTCATTCCTAGTGTAAGATCAGACCGGACCAAAGGTTGCCGGTGCACATGCTGGGCTTGAGCAT
194 GTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
** * * **
2755176 GTGCTGGTGCTGCATTTTTTTTCACCCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACC
259 GTGCTGGTGCCACTTTTTTTTTCGCCCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACC
** * *
2755241 GGCGGCATTGGGGTTCCGGTGATT-GGGGGGCGGGGGGTGTTCGCACATGATGTGCGATGGGTGC
324 GGCGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
2755305 TGGTACTTAGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
389 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
2755369 AGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
454 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
2755434 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCAAA
519 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
2755499 CAAAAATACAAGGATCACATCTACCAGGTTTGGGGCAAAAACTCATTCTGAAAAAATTTTAAAAA
584 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * * *
2755564 AATCCCGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGTGTCATCTTGCCATGAAA
649 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
2755629 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGG
714 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* *
2755694 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGC
779 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * * * * *
2755759 CTCTC-GACTGGCATAGTGCCCGCTCGTCTGCTCGTTTCGTCGGTTGGCTTTG
844 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
**
2755811 GCATACAAAGTTCATTCCCAGTCTAAGATCAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA
2755844 TCGAACCAAG
Statistics
Matches: 10838, Mismatches: 1294, Indels: 688
0.85 0.10 0.05
Matches are distributed among these distances:
855 81 0.01
856 36 0.00
857 16 0.00
858 37 0.00
859 60 0.01
860 266 0.02
861 85 0.01
862 255 0.02
863 2 0.00
864 13 0.00
865 22 0.00
866 35 0.00
867 30 0.00
868 189 0.02
869 481 0.04
870 236 0.02
871 411 0.04
872 201 0.02
873 512 0.05
874 15 0.00
875 80 0.01
876 53 0.00
877 29 0.00
878 64 0.01
879 22 0.00
880 72 0.01
881 224 0.02
882 506 0.05
883 5 0.00
884 164 0.02
885 24 0.00
886 5 0.00
887 8 0.00
888 6 0.00
889 31 0.00
890 53 0.00
891 302 0.03
892 101 0.01
893 828 0.08
894 616 0.06
895 947 0.09
896 965 0.09
897 344 0.03
898 1280 0.12
899 119 0.01
900 12 0.00
901 113 0.01
902 62 0.01
903 6 0.00
904 81 0.01
905 6 0.00
906 1 0.00
907 6 0.00
908 7 0.00
909 1 0.00
911 3 0.00
912 2 0.00
913 70 0.01
914 307 0.03
916 1 0.00
917 5 0.00
918 3 0.00
920 1 0.00
921 2 0.00
923 3 0.00
924 2 0.00
925 1 0.00
926 2 0.00
928 2 0.00
929 1 0.00
931 2 0.00
932 1 0.00
933 2 0.00
935 2 0.00
936 22 0.00
937 18 0.00
938 71 0.01
939 73 0.01
940 33 0.00
941 11 0.00
942 7 0.00
943 4 0.00
944 2 0.00
945 3 0.00
946 46 0.00
947 3 0.00
948 6 0.00
949 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGT
TCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGT
GCTGGTGCCACTTTTTTTTTCGCCCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:2746263 original size:26 final size:26
Alignment explanation
Indices: 2746234--2746286 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2746224 GTTAACTTAG
2746234 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2746260 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2746286 G
1 G
2746287 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2747122 original size:26 final size:26
Alignment explanation
Indices: 2747086--2747136 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
2747076 TGGGTTGACT
2747086 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
2747112 TAGGCATACGGAGTTCATTCCCAGT
1 TAGGCATACGGAGTTCATTCCCAGT
2747137 GTAAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:2748932 original size:26 final size:26
Alignment explanation
Indices: 2748880--2748932 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
2748870 GTTGACTTAG
* * * *
2748880 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCACTATAA
*
2748906 GCATACAGAGTTCATTCCTACTATAA
1 GCATACAGAGTTCATTCCCACTATAA
2748932 G
1 G
2748933 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCACTATAA
Found at i:2750702 original size:26 final size:26
Alignment explanation
Indices: 2750673--2750725 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2750663 GTTGACTTAG
2750673 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
2750699 GCATATGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2750725 G
1 G
2750726 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2752868 original size:896 final size:896
Alignment explanation
Indices: 2747059--2755900 Score: 11454
Period size: 896 Copynumber: 10.0 Consensus size: 896
2747049 CCGACCGATC
* *
2747059 CCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
2747124 GTTCATTCCCAGTGTAAGATCGGATCAGACTGAGGGTTGCAGGTGCACATGTTGGGCTTGGGCAT
66 GTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
* * * * *
2747189 GTACGGGTACCGCATTTCTTTTTTCGCCCGGGGCACCATCGCCTGG-GCATCTTTGGAGAACCTG
131 GTGCTGGTGCCGCA-TT-TTTTTTCGCCCGGGGCACCATCGCC-GGAGCATCATCGGAGAACCTG
* *
2747253 ACCGGCGGCTTTGGGGTTTCGACGATT-GGGGGCGAGGGGGGGTGTGCGCACATGATGTGCGATG
193 ACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGA-GGGGGGTGTGCGCACATGATGTGCGATG
*
2747317 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCC
257 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
2747382 TTTCAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
322 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
2747447 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAA
387 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
2747512 GCCAATAAAAATACAAGGATCACGTCTACCAAGCTT-AGGCCAAAACTCCTTTTG-AAAAATTTT
452 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
* * * *
2747575 AAAAAAATCCCAAACCATAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
517 AAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
2747640 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
582 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
2747705 CATTGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTACGCAT
647 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * * * * * *
2747770 CCCGATTCTCTGGCCGGCGTAGCGCCCGCCTGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATATG
712 CCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* ** *
2747835 GAGTTCATT-CTAGAGTAAGATCAGACCAGA-CTGAGGGTT-AGGTTGCAGGATCGACAG--TGC
777 GAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTCA-GTAGCAGGATCGACAGCATG-
* * * * *
2747895 ACAGGGGGGGACCC-AGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCG
839 -CA-GGGGGGACCCGA-TCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * * * * * *
2747955 CCCGTAAGCTCGTTTCATGGGTTGATTTAGGCATACGCAGTCCATTCCCAGTCTAAGCATGCGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
2748020 GTTCATTCCCAGTGTAAGATCAGA-CCGAATCGAGGGTTGTGGGTGCACATGCTTGGCTCGAGCA
66 GTTCATTCCCAGTGTAAGATCGGATCAG-ACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCA
* * * *
2748084 TGTGCTGGTGCCGTA-TGTTTTTCGCCCGGGGCACCATCGTCGGAGCATCA-CTGAAGAACCTGA
130 TGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCATC-GGAGAACCTGA
* * * * *
2748147 CCGACGGCATTGGGGTTCCGACGATTAGGGGGCGGGGGGGGTATGCACACATGATGTGCGATGGG
194 CCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGG
2748212 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
259 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
2748277 TAAAGAGCATTTGAGATTTTTCAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
324 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
2748342 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCGTGC
389 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
2748407 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAAATCCTTCTAAAAAAATTTTGA
454 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* * * * *
2748472 AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-ATGGCGCCCTGCCAT
519 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA-GTCGTCTTGCCAT
*
2748536 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGC
583 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* ** * * * * *
2748601 TTGGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGATGCCTTACGCATT
648 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * ** * * * *
2748666 TCGCCTCTCTGGTCGGTGTAGTGGCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTAGGCATACCG
713 CCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * ** * *
2748731 AGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTAAGGTAG-AGGATCGGTAACATGTAG
778 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTCA-GTAGCAGGATCGACAGCATGCAG
* * * * *
2748795 TGGGGACCCGATCGAACCTCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCG
842 GGGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* *
2748850 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACAGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * * *
2748915 GTTCATTCCTACTATAAGATCGGATCGGATCGAGGGTTGTGGGTGCACATGCTGGGCTTGGGCAT
66 GTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
** * * *** * *
2748980 GTGCTGGTGCTACATTTTTTTATCGCCCGAGGCACCATCGTCGGAGCATTGCCGAAGAACCTGAT
131 GTGCTGGTGCCGCATTTTTTT-TCGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGAC
* * *
2749045 CGGCGGCATTGGGGTTCTGACGATTGGGGGGC-A-GGGGGTGCGCACACATGATGTGCGATGGGT
195 CGGCGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGT
* **
2749108 GCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTTGTC-AACCTCGAGAACTCACACCCCCTT
260 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
2749172 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
325 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
** * **
2749237 TTTTTTCGTATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGCATGCC
390 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * * *
2749302 AAAAAAAATACAAGGATCACATCTACCATGTGTGGGGCCAGAACTCTTTCTGAGAAAATTTTAAA
455 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * *
2749367 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGGCATGA
520 AAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
2749432 AACTTCACATGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATACAAATGGCATTGGCAT
585 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
2749497 GGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGCGCATCCC
650 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
2749562 GCCTCTCTGGCCGACATAGTGGCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
715 GCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
2749627 TTCATTCCCAGTCTAAGAT-TGAACCAGACCGATGGTTGC-GACAGCAAGATCGATAGCATGTAG
780 TTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTT-CAG-TAGCAGGATCGACAGCATGCA-
* * * * * * *
2749690 GGGGGGACTCGACCGATCCCCAACTTGCGCATCCTACCCCTCTGGTCGACTGAGCA
841 GGGGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * * * * *
2749746 CCCACACGCTTGTTTCGTGGGTTGACTTAGGCAGACGAAGTTTATTCCCAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
2749811 GTTTAGT-CCAGTGTAAGATCAGACCAGACCGACGGTTGCGGGTGCGCATGCTAGGCT-GGGCAT
66 GTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
** * *
2749874 GTGCTGGTG-C-CATTTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCAGAGAACCTGAC
131 GTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGAC
* * *
2749937 CGACGGCATTGGGGTTCCGGCGATTGGTGGGGTC-AGGGGGGGCTATGCGCACATGATGTGCGAT
195 CGGCGGCATTGGGGTTCCGACGATTGG-GGGG-CGA-GGGGGG-TGTGCGCACATGATGTGCGAT
* * *
2750001 GGGTGATGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCTCACCC
256 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
2750066 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
321 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
2750131 ACACTTTTTTCAAATGGTCAGAAAATCCTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTGCT
386 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
2750196 TGCCAAGAAAAATACAAGGATCACATCAACCAAGTTTGGGGCCAAAAGTCCTTTTGAAAAAATTT
451 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* * * * *
2750261 TAAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCGTCAAAAATAGAAGACAAGTCGTCTTGCC
516 TAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* **
2750326 ATGAAACTTCACATGAAGGCTTAAAGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCATTG
581 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * * *
2750391 GCACGACAGAAATATGAAGATGTGCCGAAACCCACCTGCCACCTTATCGATCCACGGCTTGTGCA
646 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
2750456 TCCCGTCTCTCTGGCCGGCATAGTGCCC-CCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
711 TCCCGCCTCTCTGGCCGGCATAGTGCCCGCC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** *
2750520 CGGAGTTCATTCCTAGTGC-AAGATCGGACCAGATCGAGGGTTGC-GACAATAGGATCGACAACA
775 CGGAGTTCATTCCCAGT-CTAAGATCAGACCAGATCGAGGGTT-CAG-TAGCAGGATCGACAGCA
*
2750583 TGTAGGGGGGACCC-AGTCGATCCCC-GACTTGCGCAT-CTAGCCCCTCTGGCCGGCTGAGCG
837 TGCAGGGGGGACCCGA-TCGATCCCCAG-CTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCG
* *
2750643 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * **
2750708 GTTCATTCCTAGTGTAAGATCGGACCGGATCGAGGGTTATGGGTGCACATGCTAGGCTCGGGCAT
66 GTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
** *
2750773 GTGCTGGTGCCGCATTTTTTTTTCGCTTGGGG---CA----C--A--ATCGTCGGAGAACCTGAC
131 GTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGAC
* * * *
2750827 CGACGGCATTGGGGTTCCGACGATTGGGGGTG-GGGCAGGGGGTGTGCACAAATGATGTGCGATG
195 CGGCGGCATTGGGGTTCCGACGATTGGGGG-GCGAG--GGGGGTGTGCGCACATGATGTGCGA--
2750891 GGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
255 --TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2750956 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATCAAAGTGTCTGAAATG
318 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
2751021 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
383 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
2751086 GCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTGTGGGGCCAAAAATCCTT-TCGAAAAA
448 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAA
* * * *
2751150 ATATTAAAAAAATCCCGAAGCATAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCT
512 ATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
2751215 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
577 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
2751280 ATTGGCATGGCAAAAATATGAAGATGTATCTAAACCCACCTACCACCCTATCGATCCACGGTTTG
642 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
2751345 CGCATCCCGCCTCTCTGGCCAG-AGTAGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGG
707 CGCATCCCGCCTCTCTGGCCGGCA-TAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* *
2751409 CATACCGAGTTCATTCCCAGTCTAAGATCGGACCAGAT-GAGGG-T---T-----G-T-GACAGC
771 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTCAGTAGCAGGATCGACAGC
* *** * * * *
2751462 ATGCAGGGGAGGACCCGGTCGATCCGTGGCTTGCGCATCCTGCCCCTCTAGTCAGCTGAGCT
836 ATGCAGGGG-GGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * *
2751524 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGCATAAGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
2751589 GTTCATTCCCAGTGTAAGATC-GATCTGGACCTAGGGTTGTGGGTGCACATGCTGGGCTCGAGCA
66 GTTCATTCCCAGTGTAAGATCGGATC-AGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCA
* * *
2751653 TGTGCTCGTGCCGTATTTTTTTTCGCCTGGGGCACCAT---C---G-----TCGGAGAACCTGAC
130 TGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGAC
* * * *
2751707 CGACGACATCGGGGTTCCGACGATTGGGGGG-GCGGGGGGTGTGCGCACATGATGTGCGATGGGT
195 CGGCGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
2751771 GCTGGTACTTGTCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCAAACCCCCTT
260 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
2751836 AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACAC
325 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
2751901 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTATGCATGCC
390 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
2751966 AAAAAAAATAC-AGGTATCACGTCTACCAAGTTTGGGACCAAAACTCGTTCTGAAAAAATTTTAA
455 AAAAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* **
2752030 AAAAATCCCGAACTATAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATG
519 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * **
2752095 AAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTAGAAGCCATAAAAACAGCATTGGCA
584 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
2752160 TGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTACGCATCC
649 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
2752225 CGCCTCTCTGGCCGGCATAGTGCCCGCCCGTCTGCTCGTCTCGTCGGTTGGCTTAGGCATACGGA
714 CGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * *
2752290 GTTCATTCCCGGTCTAAGATCAAACCGGATCGAGGGTTCCAGCAGCAGGATCGGCAGCACGCAGG
779 GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT-CAGTAGCAGGATCGACAGCATGCAGG
* * * *
2752355 GGGGACCTGACCGATCCCCAGCTTGC-CATCCTGCCCCTTTGGCCGGCTGAGCA
843 GGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * * *
2752408 CCTGCACGCTCGTTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** *
2752473 ATTCATTCCCAGTGTAAGATC-GATTCAGACCGAGGGTTATGGGTGCACATACTAGGCTCGGGCA
66 GTTCATTCCCAGTGTAAGATCGGA-TCAGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCA
* *
2752537 TGTGCTGGTGCCGCATTTTTTTTCGCCTGAGGCACCATCGCCGGAGCATCATCGGAGAACCTGAC
130 TGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGAC
* * * *
2752602 CGGTGGCATTGGGGTTCCGGCGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTGTGATGGCT
195 CGGCGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
2752667 G-TGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
260 GCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
2752731 TAATGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCGATTAAAGTGTCTGAAATAGGGACA
324 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
2752796 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGGAAGC
389 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
2752860 CAAAAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
454 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* * *
2752925 AAACATCCCGAACTATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
519 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
2752990 AAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCA
584 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
2753055 GGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
649 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * ** *
2753120 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGA
714 CGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * *
2753185 GTTCATTCCTAGTCTAAGATGAGACCGGATCAAGGGTTGCAGTAGCAGGATTGGCAGCACGCGGG
779 GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT-CAGTAGCAGGATCGACAGCATGC--A
* * * * *
2753250 GGGGGGGCCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTTTGGCTGGTTGAGCA
841 GGGGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * * **
2753306 CCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAAA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *** *
2753371 ATTCATTCACAGTGTAACATC-GATTCGGATCGAGGGTTGCAAATGCACATACTAGGCTCGGGCA
66 GTTCATTCCCAGTGTAAGATCGGA-TCAGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCA
* * * * * **
2753435 TCTGCTGGTGCCGCATTTTTTTTTTGCCTGAGGCACCATCGCCAGAGCATCGCCGGAGAACCTGA
130 TGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA
* * * * *
2753500 TCGGTGGTATTGGGGTTCCGACGATT-GGGGGCG-GGGGGGTGTGTGCACATGATGTGCGATGGC
194 CCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
2753563 TG-TGGGTACATGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
259 TGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
2753626 TTAATGAGCATTTGAGATTTTACAAGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGAC
323 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
2753691 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATG
388 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
2753756 CCAACAAAAATACAA-TATCACGTCTACCAAGTTTGGGGGCAAAACTCCTTCTGAAAAAATTTTA
453 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* ** *
2753820 AAAAAATCCTGAACTGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
518 AAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
2753885 GAAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGC
583 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
2753950 ATGGCAGAAATATGAAGATGTTCCTAAACCCACCTACCATCCTATCGATCCACAGCTTGCACATC
648 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * ** *
2754015 CTGCCTCTCTCGCCGGCGTAGTGCCCGCCCGCCTTCTCGTTTCGTCGGTTGGCTTAGGCATACGA
713 CCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * *
2754080 AGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTCCAGTAGCAGGATTGGCAGCATGCAG
778 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT-CAGTAGCAGGATCGACAGCATGCAG
* * * *
2754145 GGGGGACCCGACCGATCCCCAGCTTGCGCATCCTACCCCTTTGGTCGGCTGAGCG
842 GGGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* *
2754200 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T--G--TA---A
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
2754256 G---A-T-CGA-T-T----T--G----GACCGAGGGTTGCGGGTGCACATACTAGGCTCGGGCAT
66 GTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
* * * * *
2754304 GTGCTGGTGCCACCTTTTTTTTTCGCCCGAGGCACCATCGCCGGAGCATCACCAGAGAACCTGAC
131 GTGCTGGTGCC-GCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGAC
* * * * *
2754369 CGGTGGCATTGCGGTTCCGGCGATTGGGGGGTC--GGGGGGTGTGCACACATGATGTGCGATGGC
195 CGGCGGCATTGGGGTTCCGACGATTGGGGGG-CGAGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
2754432 TGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
259 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
2754497 TAATGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGCGTCTGAAATGGGGACG
324 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
2754562 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATAC
389 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
2754627 TAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
454 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* *
2754692 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
519 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
2754757 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCA
584 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
2754822 TGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTAGCGCATCC
649 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
2754887 TGCCTTTTTGGTCGGCGTAGTGCCCGCCTGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
714 CGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * * *
2754952 GTTCATTCCCAGTCTAAGAT-TGAATCGGACCAAGGGTTACGGTAGCAAGATCGACAGCACGTAG
779 GTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTT-CAGTAGCAGGATCGACAGCATGCAG
* * *
2755016 GGGTGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCAGGCTGAGCG
842 GGG-GGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * * * *
2755072 CCCGCATGCTCGTTTCGTGCGTTGACTTAGGCATACGAAGTTCATTCCTAGTGTAAG-AT-C--A
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
2755133 G---A---CC---G---GA-C----CA-A---A-GGTTGCCGGTGCACATGCTGGGCTTGAGCAT
66 GTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
* * * *
2755176 GTGCTGGTGCTGCATTTTTTTTCACCCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACC
131 GTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACC
** *
2755241 GGCGGCATTGGGGTTCCGGTGATTGGGGGGC--GGGGGGTGTTCGCACATGATGTGCGATGGGTG
196 GGCGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
2755304 CTGGTACTTAGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
261 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
2755368 AAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
326 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
2755433 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG-CA
391 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
2755497 AACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCAAAAACTCATTCTGAAAAAATTTTAAA
456 AA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * *
2755562 AAAATCCCGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGTGTCATCTTGCCATGA
520 AAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
2755627 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCAT
585 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
2755692 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTC
650 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * **
2755757 GCCTCTC-GACTGGCATAGTGCCCGCTCGTCTGCTCGTTTCGTCGGTTGGCTTTGGCATACAAAG
715 GCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *
2755821 TTCATTCCCAGTCTAAGATCAGATC-GAACCAAGGGTT-ATGGTAGCAAGATCGATAGCATGCAG
780 TTCATTCCCAGTCTAAGATCAGACCAG-ATCGAGGGTTCA--GTAGCAGGATCGACAGCATGCAG
2755884 AGGGGGACCCGATCGAT
842 -GGGGGACCCGATCGAT
2755901 ACCCGATGTC
Statistics
Matches: 7093, Mismatches: 729, Indels: 276
0.88 0.09 0.03
Matches are distributed among these distances:
867 1 0.00
868 223 0.03
869 466 0.07
870 227 0.03
871 415 0.06
872 129 0.02
873 505 0.07
874 9 0.00
875 1 0.00
876 3 0.00
877 27 0.00
878 1 0.00
879 4 0.00
880 75 0.01
881 168 0.02
882 5 0.00
883 2 0.00
884 171 0.02
885 22 0.00
886 13 0.00
887 1 0.00
888 3 0.00
889 20 0.00
890 51 0.01
891 1 0.00
892 74 0.01
893 823 0.12
894 606 0.09
895 936 0.13
896 985 0.14
897 333 0.05
898 689 0.10
899 85 0.01
900 1 0.00
901 18 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
AAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
CCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTCAGTAGCAGGATCGACAGCATGCAGGGGG
GACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
Found at i:2759561 original size:26 final size:26
Alignment explanation
Indices: 2759525--2759603 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
2759515 GTTAACTTAG
2759525 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2759551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2759577 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2759603 G
1 G
2759604 ATCAGACCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2760304 original size:26 final size:26
Alignment explanation
Indices: 2760274--2760326 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2760264 GTTGACTTAG
2760274 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2760300 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2760326 G
1 G
2760327 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2762994 original size:26 final size:26
Alignment explanation
Indices: 2762942--2762994 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2762932 GTTAACTTAG
*
2762942 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
2762968 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2762994 G
1 G
2762995 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2764386 original size:896 final size:891
Alignment explanation
Indices: 2760191--2766774 Score: 8245
Period size: 896 Copynumber: 7.4 Consensus size: 891
2760181 CACTGAAAGA
*
2760191 GGGACCCGACCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
1 GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
*
2760256 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
66 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * * * * * *
2760321 TGTAAGATCGGATTGGACCGAGGGTTGTGAGTGCACATGTTGGGTTCGGGCATGTGCTGGTGTCA
131 TGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
** * * *
2760386 CATTTTTTTTTCGTCCGGGGTACCAT-CGGCTGGAGCATCGCCGGAGAACCTGACCGGCAGCAAT
196 CA-TTTTTTTTCACCCGGGGCACCATAC--C-GGAGCATC-CCGGAGAACCTGACCGGCGGCATT
* * *
2760450 GGGGTTCCGACGATTGGGGGGCGAGGGGGTGTGCGCACATGATGAGTGATGGGTGCTGGTTCTTG
256 GGGGTTCCGACGATTGGGGGGCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
2760515 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCCTTAAAGAGCATTT
320 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
2760580 GAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
385 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
2760645 GGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
450 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * * *
2760710 ATGGATCAGGTCTACCAAGTTTGAGGCCAAAACACCTTCTAAAAAAATTCTAAAAAAATCCTGAA
515 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCC-GAA
* * *
2760775 CCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAGACTTCACATG
579 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
*
2760840 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAAAAATAT
644 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATAT
*
2760905 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
709 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC
* * * * *
2760970 CGACGTAGTGGCCGCCCACCCGCTCGTTACGTTGGTTGGCTTAGGCATACCGAGTACATTCCCAG
774 CGACGTAGT-GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * ** * * * *
2761035 TCTAAGATT-GAACCAGTCCAAGGGTTACGGCAGTAGGATTGGCAGCATACAGGG
838 TCTAAGATTAGACCCA-ACTGAGGGTTACGGCAGCAGGATCGACAGCACACAGGG
* * * * *
2761089 GGTGACTCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCACCCGCAAGTTC
1 GG-GACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* * *
2761154 GTTTTGTGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTA
65 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * *
2761219 GTGTAAAATCATACCAGATCGAGGGTTACGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCT
130 GTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * * *
2761284 GCATTTTTTTTCACCCGGGGAACCATCATCGGAGCATCGTCGAAAAACCTGATCGGCGGCAATGG
195 GCATTTTTTTTCACCCGGGGCACCAT-ACCGGAGCATC-CCGGAGAACCTGACCGGCGGCATTGG
** ** * *
2761349 GGTTCCGGTGATTGAGGGGGCGGGGGGTGTGCAAACATGATCTGCGATGGGTGCTGGTACATGGC
258 GGTTCCGACGATTG-GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
2761414 CGTTATATTGTCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAACATTTGA
322 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
2761479 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATTG
387 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
2761544 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAA
452 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* *
2761609 GAATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAAATCCCGAAC
517 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAAAT-CCGAAC
* * *
2761674 CATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACATGA
580 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
*
2761739 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATG
645 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATG
* *
2761804 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCTCCTCTCTGGCC
710 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC
* * * * * *
2761869 GACGTAATGCCCACCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAAT
775 GACGTAGTG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * *
2761934 CTAAGATTGGACCAAACTGAGGGTT---GTAGC---A-CG-CAG------GGG
839 CTAAGATTAGACCCAACTGAGGGTTACGGCAGCAGGATCGACAGCACACAGGG
* *** * ** ** * *
2761973 GGGACTCGGTTGATCCCCGACTTATG-ATCCTGCCCCTCCAGCCGACTGAGCGCCCGTATGCTCG
1 GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
* * * * *
2762037 TTTCGTGGGTTGATTTAGGCATACGGAGTCCATTCCCAGTCTAAGCATACGAATTTCATTCCCAG
66 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
2762102 TGTAAGATCAGATCGGACCGAGGGTTGCAGGTGCACATGCTGGGCTTGGGCTTGTGCTGGTGCGG
131 TGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
*** **
2762167 CATTTTTTTTCACTTAGGGCACCAT--C---G--T--CGGAGAACCTGACCGATGGCATTGGGGT
196 CATTTTTTTTCACCCGGGGCACCATACCGGAGCATCCCGGAGAACCTGACCGGCGGCATTGGGGT
*
2762223 TCCGACGATTAGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA-TTGGGCCT
261 TCCGACGATT-GGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GGCCC
* * *
2762287 TTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGGGA
324 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
2762352 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGATATGGGGACACTTTTTTCAAATGGTC
389 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
2762417 ACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGG
454 ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
2762482 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAATCCCGAACCG
519 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAAAT-CCGAACCG
** *
2762547 TAAAAAGTTTTGAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
582 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
* * *
2762612 GCTTAAGGGACCATTGTATGAATTTAGAAGCCATAGAAGA-GGCATTGGCATGGCAGAAATATGA
647 GCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATGGCAAAAATATGA
* *
2762676 AGATGTGACTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGCCTCTCTGGCCG
711 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* * * * * * *
2762741 ACGTAGTGCCCACCCACCCGCTCCTTTCATCAGTTGGCTTAGGCATACGGAGTTCACTT-CTAAT
776 ACGTAGTG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCCCAGT
* * *** ** ** * * *
2762805 TTAAGATTGGACAGGA-TGGAGGGTTGTGGCAATAGGATTGGCAGCACGCAGGGG
839 CTAAGATTAGACCCAACT-GAGGGTTACGGCAGCAGGATCGACAGCACACA-GGG
* * * * * * * * *
2762859 GGGACACGGCCGATCCCCGGCTTGCGCATCCTGCCCATCTAGCCGGCTGAACGCCCGTACACTCA
1 GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
* * *
2762924 TTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
66 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
2762989 TGTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGG-TTGGGCATGTCCTGGTGTTC
131 TGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG-CC
** * * * *
2763053 -CATTTTTTTTTTGCCCGGGGCACCAT--C---G----CCTGAGACCCTGACTGGCTGCATTGGG
195 GCA-TTTTTTTTCACCCGGGGCACCATACCGGAGCATCCCGGAGAACCTGACCGGCGGCATTGGG
* *
2763108 GTTCCAACGATTGGGAGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGG
259 GTTCCGACGATTGGG-GGGC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
2763173 CCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTGACACCCCCTTATAGGGCATTTG
321 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
2763238 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATG
386 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * * *
2763303 ATCACAAAATCGTATACACTTCGATTTTTTAGCTCAATATTTTTGTGCATGCCAACAAAAATACA
451 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* *
2763368 AGGATCATGTCTACCAAGTTTGGGGCCAGAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAAC
516 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC-CGAAC
* *
2763433 CTTAAAAAGTTTCTAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
580 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
* *
2763498 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATG
645 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATG
* * **
2763563 AAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGGC
710 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT-GGC
* * * * * * * *
2763628 GGA-GTAATGCTCGCTCGTCCGCTAGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCACAG
774 CGACGTAGTGC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * **
2763692 TCTATCATTAGACCCAACTGAGGGTTAAGATAGCAGGATCGACAGCACACAGGG
838 TCTAAGATTAGACCCAACTGAGGGTTACGGCAGCAGGATCGACAGCACACAGGG
* * * * *
2763746 GAGGACCCGATCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGACTAAGTGCCCGCACGCTC
1 G-GGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* * *
2763811 GTTTTGTGGGTTGACTTAGGCAAACAGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCA
65 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
2763876 GTATAAGATCGGACCGGACTGAGGGTTGTGGGTGCACATGCTAGGCTCAGGCATGTGCTGGTGCC
130 GTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* *
2763941 GCATTTTTTTTCGCCCGGGGCACCATAGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGG
195 GCATTTTTTTTCACCCGGGGCACCATA-CCGGAGCATC-CCGGAGAACCTGACCGGCGGCATTGG
2764006 GGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
258 GGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
2764071 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGAGCAATTGAG
323 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
2764136 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
388 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * * *
2764201 CCCAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCTTGCCAAAAAAAATACAAG
453 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* *
2764266 GATCACCTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTTTAAAAAAATACCGAACCG
518 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT-CCGAACCG
* ** * *
2764331 CAAAAAGTTTCAAAAATGGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACATGAAG
582 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
*
2764396 GCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAA
647 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAA
* ** *
2764461 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCTCTAACCAA
712 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA
** *
2764526 CGTAGTGCCTGCTTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCT
777 CGTAGTGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * ** * * * * *
2764591 AAGATCAAACCGGACCGAGGGTTGCGGCATCATGATC-AGCAGTACACAGGG
841 AAGATTAGACCCAACTGAGGGTTACGGCAGCAGGATCGA-CAGCACACAGGG
*** ** * * * * * * * *
2764642 CAAACCCGGTCGATCCCTGGCTTGCACGTCATACCCCTCTTGCCGGCTGAGCGCCCACACGCTCG
1 GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
* * *
2764707 TTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAG
66 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
2764772 TGTAAGATCAGAGCGCAACGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCAAGTGCTGGTGCTG
131 TGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * *
2764837 CATTTTTGTTTCGA-TCAGGGCACCAT-CGCTGGAGCATCATCGGAGAACCTGACCGGCGGCATT
196 CATTTTT-TTTC-ACCCGGGGCACCATAC-C-GGAGCATC-CCGGAGAACCTGACCGGCGGCATT
*
2764900 GGGGTTCCGACGATTGAAGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
256 GGGGTTCCGACGATTG-GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
2764965 GCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
320 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
** *
2765030 GAGATTTTACAGGTTTGCTGCCAGTAGCCATGGAAGTGTCTAAAATGGGGACACTTTTTTCAAAA
385 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAA
* * *
2765095 TGGTCACTAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATA
449 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
2765160 CAAGGATCATGTCTACCAAG-TTGGGGCCAAAACTCCTTCTGAAAAAACTTT-AAAAAATCTCAA
514 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC-CGA
* * *
2765223 ACCGTAAAAGGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
578 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* *
2765288 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAAAGGCATTGGCATGGCAAAAATA
643 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATA
** ** * * *
2765353 TGAAGATGTGCCTAAACCCACAAACCATACTAACGATCCATGGCTTGCGCATCCTGCCTCTCTGG
708 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * *
2765418 CCGACGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTAATTCCTA
773 CCGACGTAGTG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * ** * * * * *
2765483 GTCTAAAATAAGATCGGA-TCGAGGGTTACGGCAGTAGGATGGGCATCACGCAGGG
837 GTCTAAGATTAGACCCAACT-GAGGGTTACGGCAGCAGGATCGACAGCACACAGGG
* ** * * * *
2765538 GGGACCCGACCGATGCTTGGCTTGTGCATGCTGCCCCTCTTGCCGACTGAGCG-CCGTCACACTC
1 GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCG-CACGCTC
*
2765602 GTTTCAT-GG--G---T-----T---GA---C-TT---AG-----GCATACGGAGTTCATTCCCA
65 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * ** *
2765641 GTGTAAGATCAGACCAGACCAAAGGTTTTGGGTGCACATGGTGGGCTCGGGCATGTGCTGGTGCC
130 GTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * ** *
2765706 GTATTTTTTTTTCACCTGGGGGTCTATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
195 GCA-TTTTTTTTCACCCGGGGCACCAT-ACCGGAGCATC-CCGGAGAACCTGACCGGCGGCATTG
* * * *
2765771 GGGTTCTGACGAATGGGGGGGCGGGGGGGTGTGTGCACATGACGTGCGATGGGTGCTGGTACTTG
257 GGGTTCCGACG-ATTGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
2765836 GCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCGCCTTAAAGAGCATTT
320 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
2765901 GAGATTTTACAGGTTTGCTGCTAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
385 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
2765966 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCACGCCAACAAAAATAT
450 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
2766031 AAGGATCACGTCTGCCAAGTGTGGGGTCAAAACTCCTTC-GAAAAAAATTTAAAAAAAATCTCGA
515 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAAATC-CGA
* *
2766095 ACCATAAATAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
578 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* * * *
2766160 GAAGGCCTGAGGGACCATTGTATGAATTTACAAGCCATACAAATGGCATTGGCATAGCAAAAATA
643 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATA
*
2766225 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGCCTCTCTGG
708 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * * * *
2766290 ACTACGTAGTGCCTGCCCGCCCGTTCGTTTCTTCGGTTGGCTTAAGCATAC-GACTTCATTCCCA
773 CCGACGTAGTGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * * * **
2766354 GTCTAAGATCAGA-CCAGATCT-AGAGTTGTGGTAGCAAGATC-AGTAGCACGTAGTGG
837 GTCTAAGATTAGACCCA-A-CTGAGGGTTACGGCAGCAGGATCGA-CAGCACACAG-GG
** * * * * * * *
2766410 GGGACCCGGGCGATGCCTGGCTTGCACATCCTGCCCCTCTGGCCGGCTGAACACCCGGACGCTCG
1 GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
2766475 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
66 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** * * * * * * * **
2766540 TGTAAGATTGGACTGGATCGAGGGTTACAGGTGCACATGTTGGGCTTGGGCTTGTGCTGGTGTAG
131 TGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * **
2766605 CATTGTTTTTCACCTGGGGCACCAT--C---G--T--CGGAGAACCTGAATGGCGGCATTGGGGT
196 CATTTTTTTTCACCCGGGGCACCATACCGGAGCATCCCGGAGAACCTGACCGGCGGCATTGGGGT
* * * * *
2766661 TTC-AGTGATTGGGGGGCAGGGGGTGTGTGCACATGATGTGCGATGGATGCTGGTACTTGGCCCT
261 TCCGA-CGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
2766725 TATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
325 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
2766775 TATTGGCCCG
Statistics
Matches: 4938, Mismatches: 634, Indels: 242
0.85 0.11 0.04
Matches are distributed among these distances:
869 1 0.00
870 216 0.04
871 805 0.16
872 291 0.06
873 6 0.00
874 3 0.00
875 3 0.00
876 1 0.00
877 1 0.00
878 4 0.00
879 5 0.00
882 169 0.03
883 18 0.00
884 95 0.02
885 11 0.00
886 73 0.01
887 195 0.04
888 432 0.09
889 290 0.06
890 8 0.00
891 3 0.00
892 1 0.00
893 3 0.00
894 3 0.00
895 183 0.04
896 937 0.19
897 522 0.11
898 448 0.09
899 211 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTTTTCACCCGGGGCACCATACCGGAGCATCCCGGAGAACCTGACCGGCGGCATTGGGGT
TCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCGAACCGTAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTA
GTGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
TAGACCCAACTGAGGGTTACGGCAGCAGGATCGACAGCACACAGGG
Found at i:2764764 original size:26 final size:26
Alignment explanation
Indices: 2764728--2764777 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
2764718 GACTTAGGCG
*
2764728 TACGGAGTTCATTCCTAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
2764754 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
2764778 ATCAGAGCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:2766529 original size:26 final size:26
Alignment explanation
Indices: 2766493--2766545 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2766483 GTTGACTTAG
2766493 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2766519 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2766545 G
1 G
2766546 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2767010 original size:26 final size:26
Alignment explanation
Indices: 2766973--2767025 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2766963 GTGGACTTAG
*
2766973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2766999 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2767025 G
1 G
2767026 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2773833 original size:26 final size:26
Alignment explanation
Indices: 2773781--2773833 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2773771 GGTTGACTTG
* *
2773781 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAATGTAA
*
2773807 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACAGAGTTCATTCCCAATGTAA
2773833 G
1 G
2773834 ATCGGACCCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATGTAA
Found at i:2774702 original size:26 final size:26
Alignment explanation
Indices: 2774666--2774718 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2774656 GTTGACTTAG
* * *
2774666 GCATACGGAGTTCATTTCCAGTTTAA
1 GCATACGGAGTTAATTCCCAGTGTAA
*
2774692 GCATATGGAGTTAATTCCCAGTGTAA
1 GCATACGGAGTTAATTCCCAGTGTAA
2774718 G
1 G
2774719 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTGTAA
Found at i:2775409 original size:884 final size:883
Alignment explanation
Indices: 2773696--2775917 Score: 3116
Period size: 884 Copynumber: 2.5 Consensus size: 883
2773686 TGTGACAAAG
* * * * *
2773696 GGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCTGCCGCTCTGGCCGGCTGAGCGCCCGCACGT
1 GGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC-CCCGCACGC
* *
2773761 TCGTTTCATGGGTTGACTT-GGCATACAGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCC
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCC
** * * ** * * * *
2773825 CAATGTAAGATCGGACCCGACTGAGGGTTGCGGGTCCATATGCTGGGCTCGGGTATGTGCTGGTG
130 CAATGTAAGATCGGACTGGTCCGAGGGTTATGGGTGCACATGCTGGGCTCGGGCATGTACTGGTG
* * ** ** * * *
2773890 CCGCATTATTTTTTGC-CTGGGCACCATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTTCGGC
195 CAGCATT-GTTTTCACTCTGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGAC
* * * * *
2773954 GATTGGGGAGGCGGGGGGGTGTGCGCACATGATTTGTGATAGGTGCTGGTACTTGGCCCCTATAT
259 GATTGGGG-GGC-GGGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
** *
2774019 TGGTATCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTAC
322 TGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
2774084 AGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACA-TTTTTTCCAAATGGTCACAAA
387 AGGTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCCAAATGGTCACAAA
* **
2774148 ATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATATGAGGATCAC
452 ATCCTATACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCAC
* * * *
2774213 GTCTACCAAGTTTGAGGCCCAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAA
517 GTCTACCAACTTTGAGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCATAAAAA
*
2774278 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
582 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAA
* *
2774343 GGGACCATTGTATGAATTTACAAGCCATACAAATGGCATTGGCATGGTAGAAATATGAAGATGTG
647 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* * * * *
2774408 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGTATCCTGCCTCTCTGGTCGGCGTAGT
712 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT
* * * * * *
2774473 ACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGGTCATTCCTAGTTTAAGATC
777 ACCCGCCCGCCCGCTCATTTAGTCGGTTGGCTGAGGCATACAGAGGTCATTCCCAGTCTAAGATC
*
2774538 TG-ACCGGACCGAGGGTTGTGGCAGTC-GGATTC-CCAGCACGTA
842 -GAACCGGACCGAGGGTTATGGCAG-CAGGA-TCGCCAGCACGTA
* * *
2774580 GGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCATCCGCACAC
1 GGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC-CCCGCACGC
* * *
2774645 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTTTAAGCATATGGAGTTAATTCC
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCC
* **
2774710 CAGTGTAAGATCGGACTGGTCCGAGGGTTATGGGTGCACATGCTGGGCTCGGGCATGTTTTGGTG
130 CAATGTAAGATCGGACTGGTCCGAGGGTTATGGGTGCACATGCTGGGCTCGGGCATGTACTGGTG
* * * *
2774775 CAGCATTGTTTTCACTCGGGGCACCATCACCGGAGAACCTGATCAACGGCATTAGGGTTTCGACG
195 CAGCATTGTTTTCACTCTGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGACG
* *
2774840 ATTGGGGGGCGGCGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGCACATGGCCCTTATATTG
260 ATTGGGGGGCGG-GGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
2774905 GCCTCCTATCCCTCATCAAACCTCGAGAACTCATACCCCTTTAAAGAGCATTTGAGATTTTACAG
324 GCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
2774970 GTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTT-CAAATGGTCACAAAAT
389 GTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCCAAATGGTCACAAAAT
* *
2775034 CCTATACACTTTGAGTTTTTAGCTGAATGTTTTTATGTATGCCAACAAAAATACAAGGATCACGT
454 CCTATACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGT
* * * *
2775099 CTTCCAACTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAATCATAAAAAGT
519 CTACCAACTTTGAGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGT
*
2775164 TTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGG
584 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGG
2775229 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC
649 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC
*
2775294 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGC
714 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTAC
*
2775359 CCGCCCGCCCGCTCATTTAGTCGGTTGGCTGAGGCATACAGAGTTCATTCCCAGTCTAAGATCGA
779 CCGCCCGCCCGCTCATTTAGTCGGTTGGCTGAGGCATACAGAGGTCATTCCCAGTCTAAGATCGA
* * **
2775424 ACTGGACCGAGGGTTATGGTAGCAGGATCGGTAGCACGTA
844 ACCGGACCGAGGGTTATGGCAGCAGGATCGCCAGCACGTA
* *
2775464 GGGGGCGACCCGACCAATCCCC-AGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCACGCAC
1 GGGGG-GACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC-CCCGCAC
** * *
2775528 GCTTATTTCGTGGGTTAAGTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATT
63 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATT
* *
2775593 CCCAATGTAAGATCGGA-TCGGAT-CGAGGGTTGCTGGG-GCACATGTTGGGCTCGGGCATGTAC
128 CCCAATGTAAGATCGGACT-GG-TCCGAGGGTT-ATGGGTGCACATGCTGGGCTCGGGCATGTAC
* *
2775655 TGGTGCTGTATTTGTTTTTCACTCTGGGCACCATCACCGGAGCATCGCTGGAGAACCTGACCGAC
190 TGGTGCAGCA-TTG-TTTTCACTCTGGGCACCAT--------CA-C-C-GGAGAACCTGACCGAC
* * *
2775720 GGCTTTGGGGTTCCGACGATTGGGGGGGCGGGGGGGGTGTACGCACATGATGTGCGATGGGTGCT
242 GGCATTGGGGTTTCGACGATT-GGGGGGCGGGGGGCGTG--CGCACATGATGTGCGATGGGTGCT
* * *
2775785 GGTACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
304 GGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
2775850 GAGGATTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTAT
369 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTT
2775915 TTT
434 TTT
2775918 AGATTTTACA
Statistics
Matches: 1184, Mismatches: 126, Indels: 40
0.88 0.09 0.03
Matches are distributed among these distances:
883 6 0.01
884 637 0.54
885 317 0.27
886 8 0.01
887 18 0.02
895 2 0.00
896 1 0.00
897 1 0.00
898 39 0.03
899 9 0.01
900 146 0.12
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
GGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCC
AATGTAAGATCGGACTGGTCCGAGGGTTATGGGTGCACATGCTGGGCTCGGGCATGTACTGGTGC
AGCATTGTTTTCACTCTGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGA
TTGGGGGGCGGGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCCAAATGGTCACAAAATCC
TATACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAACTTTGAGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTT
CAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTACCC
GCCCGCCCGCTCATTTAGTCGGTTGGCTGAGGCATACAGAGGTCATTCCCAGTCTAAGATCGAAC
CGGACCGAGGGTTATGGCAGCAGGATCGCCAGCACGTA
Found at i:2775603 original size:26 final size:26
Alignment explanation
Indices: 2775551--2775603 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2775541 GTTAAGTTAG
* *
2775551 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAATGTAA
2775577 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATGTAA
2775603 G
1 G
2775604 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATGTAA
Found at i:2775946 original size:59 final size:59
Alignment explanation
Indices: 2775854--2775976 Score: 219
Period size: 59 Copynumber: 2.1 Consensus size: 59
2775844 CTTAAAGAGG
*
2775854 ATTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
1 ATTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
*
2775913 ATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
1 ATTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
*
2775972 TTTTT
1 ATTTT
2775977 CAAATAGTCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.37
Consensus pattern (59 bp):
ATTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
Found at i:2778810 original size:26 final size:26
Alignment explanation
Indices: 2778774--2778826 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2778764 GTTGACTTAG
* *
2778774 GCATACGGAGTTCATTCTCAGTGTAA
1 GCATACGGAGTTCATTCCCAATGTAA
2778800 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATGTAA
2778826 G
1 G
2778827 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATGTAA
Found at i:2779721 original size:26 final size:26
Alignment explanation
Indices: 2779669--2779721 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2779659 GTTGACTTAG
*
2779669 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
2779695 GCATACATAGTTCATTCCCAATGTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2779721 G
1 G
2779722 ATTAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2780211 original size:895 final size:892
Alignment explanation
Indices: 2777487--2787598 Score: 12773
Period size: 895 Copynumber: 11.4 Consensus size: 892
2777477 AAACTCTACT
* * *
2777487 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCGTGAAACTTCACATCAAGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
2777552 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* *
2777617 TGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
** * * * *
2777682 GTGCCTACCCGCCAGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-ATA
196 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** ** * * ** * *
2777746 TCAGACCGGATTGAGGGTTGCGATAGTAGGATCGGTAGCACATAGGGGGGGACCCGGTCAATCCC
261 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA-GGGGGGACCCGATCGAT-CC
* * * * *
2777811 CGGCTTGCGCATCCTGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGCGGGTTGAGTTA
324 CGGCTTGAGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * ** * * * * *
2777876 GGCTTGCAGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATTGGACCGGT
389 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCAGA
* ** * * * *
2777941 CCAACAGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATGTTTTTTTTGCCCG
454 CCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACAT-TTTTTTCT-CCCG
* * * ** * * *
2778006 GGGCACCATCGTCGAAGCATCACCGGAGAA-CTAGATCGATGGCATTGGGGTTCTGACGA-TAGG
517 GGGCACCATCATCGGAGCATC-CCGGAGAACCT-GACCGGCGGCATTGGGGTTCCGGCGATTGGG
2778069 GGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
580 GGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
2778134 TATCCCTCATCAAACCCCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
644 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
2778199 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
709 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* * * *
2778264 ACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCTCCTCTACCAA
774 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * *** *
2778329 GTTTGGGGCCAAAACTCTTTTTGAAAGAATTTAAAAAAAAGATCGAACTGTAAA
839 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
* * * * * *
2778383 AAGTTTTAAAAATCTTAAAAAATAGAAAACGGGTTGTCTTGCCATGAAACTTCAGATGAAGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
*
2778448 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATTTGAAGATG
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* * * *
2778513 TGCCTAAACCCACATACCACCTTATCGATCCATGGCTTGCGCATCCCTCCTCTCTGGCCGGCGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
** * * * *
2778578 GTAACCGCCCGCCCGCTCGTTTTG-CGGGTTGGCTTAGGCATACGAAGTTTATTCCCAATCTAAG
196 GTGCCCGCCCGCCCGCTCGTTTCGTC-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * ** * * * *
2778642 ATCAAATCAGACCGAGGGTTGCGGCAGCAAGATCGACAGAATACAGGAGGCGAGCCTACCGATCC
260 ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGG-GGGGACCCGATCGAT-C
* *
2778707 CCGGCTTGTGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTT
323 CCGGCTTGAGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * *
2778772 AGGCATACGGAGTTCATTCTCAGTGTAAGCATACGGAGTTCATTCCCAATGTAAGATCGAACCAG
388 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCAG
** * * * *
2778837 AATGAGGGTTGCGGGTGCACATGCTCGGCTCAGGCATGTG-TGGGTGCCACATTTTTTT-TCGCT
453 ACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCT-GGTGCTACATTTTTTTCTC-C-
** ** * * * * *
2778900 CAAGGCACCATTGTCGGAACATCACCGGAGAATCTGACCGACGACATTAGGGTTCCGGCGATTAG
515 CGGGGCACCATCATCGGAGCATC-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATT-G
*
2778965 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
578 GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
2779030 TTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
643 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
2779095 CTGCCAGTAGCCATTAAAGTGTCTGAAATGCGAAAACTTTTTTCAAATGGTCACAAAATCCTGTA
708 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
* * * *
2779160 CACATCAAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGAATCAGGTCTACCA
773 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
*
2779224 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAA
838 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
* * ** * *
2779279 TAGTTTCAAAAATCATGAAAAATAGAAAATTAGTCGTCTAGCCATGAAACTTTACATGAAGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* *
2779344 AAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGGCATTGGCATAGCAAAAATATGAAGAT
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GGCATTGGCATGGCAGAAATATGAAGAT
* * *
2779408 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCACCTCTCTGGCCGACGT
130 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
* ** * * *
2779473 AGTGCCCACCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTACG
195 AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * * *
2779538 ATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCAACAGCATGCTGGGGAGGACCCGGTCGATCC
260 ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGG-GGACCCGATCGATCC
* * * *
2779603 CGGCTTGAACATCCTGCCCCTCTGACTAGCTGAGCGCCCGCACGCGCGTTTCGTGGGTTGACTTA
324 CGGCTTGAGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* ** * **
2779668 GGCATACAGAGTTCATTCCCAGTCTAAGCATACATAGTTCATTCCCAATGTAAGATTAGATCAGA
389 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCAGA
* ** * * * * *
2779733 CTGAGGGTTGTGGGTGCACATGCTAGGCTCGGGCATGTGTTGGTGCTGCATTTTTTTCTCCCAGC
454 CCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTTTCTCCCGGG
* * *
2779798 GCACCATCATCGGTGCATCACCGGAGAACCTGTCCGGCAGCATTGGGGTTCCGGCGATTGGGGGG
519 GCACCATCATCGGAGCATC-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGG
* * **
2779863 ACGGGGGGTATGCGCACATTATGTGCGATGGGTGCTTCTACTTGGCCCTTATATTGGCCCCCTAT
583 -CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
2779928 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGC
647 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
2779993 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCCTGTACACT
712 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
* * *
2780058 TTGAGTTTTTAGCTGAATTTTTTTGTGCACT-CCAAAAAAAATACAAGGATCATGTCTACCAAGT
777 TCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
2780122 TTGGGGACAAAATTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
841 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
** *
2780174 AAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACATGAAGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* * * *
2780239 AAGGGACCATTGTATGAATTTACAAGTCATAAAAATGCCATTGGCATGGCAAAAATATGAAGGTG
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* * * * *
2780304 AGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGTATCCCGGCTCTCTGGCCGACGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* *
2780369 GT----GCCCGCCCGCTTGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGA
196 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * ** * *
2780430 TTGGACCAGACCAAGGGTTGAGGCAACAGGATCTACAGCATGCAGGGGGGACCCGATCGAACCCC
261 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCG-ATCCC
* * ** *
2780495 GGCTTGTGCATCCTGCCCCTCTGGCAGGCTGAGCG-CCATACGCTCGTGTTCGTGGTTTGACTTA
325 GGCTTGAGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGT-TTCGTGGGTTGACTTA
* * * ** *
2780559 GGCTTGCCGGAGTTCATTCCCAATCTAAGCATACGGAGGTTCATT-CCAGTGTAAGAT-AAACCC
389 GGCAT-ACGGAGTTCATTCCCAGTCTAAGCATACGGA-GTTCATTCCCAGTGTAAGATCGGA-TC
** * * * * * *
2780622 AGACCGGATAGTTACGGTTGCAGCATGCTGGGTTTGGGCATGTACTGGTGC-ATATTGTTTTTCC
451 AGACC-GAGGGTTACGGGTGCA-CATGCTGGGCTCGGGCATGTGCTGGTGCTACATT-TTTTTCT
* ** * * *
2780686 CCCAGGGCAACCATTCGCCGGAGCATCACCGGAGAA-CTGATCGACGGCATTGGGGTTCC-ACGA
513 CCCGGGGC-ACCA-TCATCGGAGCATC-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA
* * ** *
2780749 TTGGGGGGTTGGGGGGGTGTGCGCGACA-AATGTGCGATGGGTGCTGGTACTTGGTTCTTATCTT
575 TTGGGGGG--CGGGGGGTGTGCGC-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
2780813 GGCCGCCTAT-CCTCATC-AACGCT--AGAACTCACAACCCTTTAAAGAGGCATTTGAGATTTTA
637 GGCCCCCTATCCCTCATCAAAC-CTCGAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTA
*
2780874 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
700 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
2780939 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
765 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
**
2781004 GTCTGGCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
830 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
* *
2781067 AAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAGGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* *
2781132 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTATAAATATGAAGATG
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* * * ** * * *
2781197 TGCCTAAACCCACCTACCACCCTATCGAACCATGACTTGCATATCCCCACCTCTCTTGCCGACGT
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCCGCCTCTCTGGCCGGCGT
* * **
2781262 AGTGCTCGCCCGCCCG-TGGGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAA
195 AGTGCCCGCCCGCCCGCT-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * ** * * * **
2781326 GAACAGACCCGAATGAGGGTTGCAGTAGTAGGATCGATAGCACACAAGGGGGACCTGGCCGATCC
259 GATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCC
* * * * * * *
2781391 ACGACTTGCGCATCCTACCCCTCCGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTT
324 -CGGCTTGAGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * *
2781456 AGGCATACGGAGTTCATTCCCAGTCCAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGATCGG
388 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCAG
* *
2781521 ACCAAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTC-CCTCG
453 ACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTTTCTCC-CG
* * * * *
2781585 GGGCACCATCATCGGAG-AT---------CCTGACCGACGGCATTGAGGTTCCAGTGTTTGGGGG
517 GGGCACCATCATCGGAGCATCCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGG
*
2781640 GCAAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
582 GC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
2781705 TCCCTCATCAAATCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
646 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
2781769 CCAGTAGCCATTAAATTGTCTCAAATGGGGACACTTTTTTGAAATGGTCACAAAATCCTGTACAC
711 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* * * * *
2781834 TTTGAGTTTTTAGTTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTTTAACAAGT
776 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** *
2781899 TTGTCGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCGAACCGTAAA
841 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
*
2781951 AGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* *
2782016 AAGGGACCATTGTATGAATTTAGAAGCCATAAAAACGGCATTGGCATGGCAGAAATATGAAGATG
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* * * *
2782081 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCACGCCTCTCTGGTCGGCATA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* * ** *
2782146 GTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGTTTAGGCATACGGAGTTCATTCTAAGTCTAGGA
196 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * * *
2782211 TTGGACCAGATCGAGGGTTGCAGCAGTAGGA-CTGGCAGCACACGGGGGTGGACCCGATCGATCC
261 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATC-GGCAGCACGCAGGGG-GGACCCGATCGATCC
* * * * * * *
2782275 TCGACTT-ACGCATCCTGCCCCTCCGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGATT
324 -CGGCTTGA-GCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * **
2782339 TAGGAATATGGAGTTCATTCCCAGTCCAAGCATAGGGAGTTCATTCCCAGTGTAAGATCGGATTG
387 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCA
* *
2782404 GACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGT-CCACA-TTTTTTC-CCCT
452 GACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTTTCTCCC-
* * *
2782466 GAGGCA-C--CATC---G--T--CGGAGATCCTGA-CGGACGGCATTGGGGTTCCGACGATTGGG
516 GGGGCACCATCATCGGAGCATCCCGGAGAACCTGACCGG-CGGCATTGGGGTTCCGGCGATTGGG
* * * * *
2782520 GGGACGGGGGGTGTGCGCACATGATTTGTGCTGGGTGCTGGTACTTAGCCCTTCTATTGGCCCCC
580 GGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
2782585 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGC
644 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
2782649 TACCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATAC
709 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* *
2782714 ACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
774 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* **
2782779 GTTTGGGGCAAAAACT-C--CTGAAAAAATTTTAAAAAAATCCAAAACCGTAAA
839 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
2782830 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
*
2782895 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATG
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* *
2782960 TGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTCTCTGGCCGGCGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* * * *
2783025 GTGCCCGCCCGCCCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCTAGTCTAAGA
196 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** * *
2783090 TCGGACCAGACCGAGGGTTGTGGTATTAGGATTGGTAGCACGCAGGGGGTG-CCTCGA-CTGATC
261 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGG-GACC-CGATC-GAT-
* * * * *
2783153 CCCGGCTTGCGCATCCTACCCCTCTGG-TCGACTGAGCGTCCGCACGCTTGTTTCGTGGGTTGAC
322 CCCGGCTTGAGCATCCTGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* *
2783217 TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATT
386 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATC
* * * **
2783282 AGATCGAGGGTTACGGATGCACATGCTGGGCTCGGGCATGTGCTAGTGCTGTATTTTTTT-TCAA
451 AGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTTTCTC--
* * * * ** * * *
2783346 TCGGGGCACCATC-GCTGGAGCATCGCCGAAGAACCTAACCAACGGCATTGAGGTTTCGGTGATT
514 CCGGGGCACCATCATC-GGAGCATC-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATT
* * * * *
2783410 GGGGGTCGGGGGGCTGTGCACACTTGATGTGTGATGGGTGCTGGTACATGGCCCTTATATTGGCC
577 GGGGGGCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
2783475 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
641 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
2783540 TGTTGCCAGTAGCCATTAAATTGTCTGAAATGGGAACACTTTTTTCAAATGCTCACAAAATCCTG
706 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTG
* * *
2783605 TACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGTATCACGTCTAC
771 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
** * ** *
2783670 CAAGTTTGTTGCCAAAACT-CTTTTGAAAAAATTTT-AAAAAATTTCAAACCGTAAA
836 CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
*
2783725 AAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* *
2783790 AAGGGACCATTGTATGAATTTAGAAGCCATAAAAACGGCATTGGCATGGCAGAAATATGAAGATG
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* * * *
2783855 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCACGCCTCTCTGGTCGGCATA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* * ** *
2783920 GTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGTTTAGGCATACGGAGTTCATTCTAAGTCTAGGA
196 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
2783985 TCGGACCAGATCGAGGGTTGCAGCAGTAGGA-CTGGCAGCACACGGGGGTGGACCCGATCGATCC
261 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATC-GGCAGCACGCAGGGG-GGACCCGATCGATCC
* * * * * *
2784049 TCGACTT-ACGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGATT
324 -CGGCTTGA-GCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * **
2784113 TAGGAATATGGAGTTCATTCCCAGTCCAAGCATAGGGAGTTCATTCCCAGTGTAAGATCGGATTG
387 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCA
* * *
2784178 GACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGT-CCACA-TTTTTTCCCCCG
452 GACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTTTCTCCCG
* * *
2784241 AGGCA-C--CATC---G--T--CGGAGATCCTGA-CGGACGGCATTGGGGTTCCGACGATTGGGG
517 GGGCACCATCATCGGAGCATCCCGGAGAACCTGACCGG-CGGCATTGGGGTTCCGGCGATTGGGG
* * * * *
2784295 GGACGGGGGGTGTGCGCACATGATTTGTGCTGGGTGCTGGTACTTAGCCCTTCTATTGGCCCCCT
581 GG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2784360 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
645 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
2784425 ACCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACA
710 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* *
2784490 CTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
775 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* **
2784555 TTT-GGGCCAAAAACT-C--CTGAACAAATTTTAAAAAAATCCAAAACCGTAAA
840 TTTGGGGCC-AAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
2784605 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
2784670 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* *
2784735 TGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGCCTCTCTGGCCGGCGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* * * * *
2784800 GTGCCCGCCCGCCCGTTTGTTTCGTTGGTTGGCTTAGGCATACGGTGTTCATTCCTAGTCTAAGA
196 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** * *
2784865 TCGGACCAGACCGAGGGTTGTGGTATTAGGATTGGTAGCACGCAGGGGGTG-CCTCGA-CTGATC
261 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGG-GACC-CGATC-GATC
* * * * *
2784928 CCTGGCTTGCGCATCCTACCCCTCTGG-TCGACTGAGCGTCCGCACGCTTGTTTCGTGGGTTGAC
323 CC-GGCTTGAGCATCCTGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* *
2784992 TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATT
386 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATC
* * * * **
2785057 AGATCAAGGGTTACGGATGCACATGCTGGGCTCGGGCATGTGCTAGTGCTGTATTTTTTT-TCAA
451 AGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTTTCTC--
* * * * * * * *
2785121 TCGGGGCACCATC-GCTGGAGCATCGCCGAAAAACCTAACCGACGGCATTGAGGTTTCGGCGATT
514 CCGGGGCACCATCATC-GGAGCATC-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATT
* * * * *
2785185 GGGGGCCGGGGGGCTGTGCACACTTGATGTGTGATGGGTGCTGGTACATGGCCCTTATATTGGCC
577 GGGGGGCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
2785250 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
641 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
2785315 TGTTGCCAGTAGCCATTAAATTGTCTGAAATGGGAACACTTTTTTCAAATGCTCACAAAATCCTG
706 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTG
* * *
2785380 TACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGTATCACGTCTAC
771 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
** * ** *
2785445 CAAGTTTGTTGCCAAAACTCTTTCTGAAAAAATTTTAAAAAAATTTCAAACCGTAAA
836 CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
*
2785502 AAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* * *
2785567 AAGGGACCATTGTATGATTTTAGAAGCCATAAAAATGGCATTGACATGGC-GTAAATATGAAGAT
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG-AAATATGAAGAT
* * * *
2785631 GTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTACGCATCCCACCTCTCTGGCCAGCGT
130 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
*
2785696 AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAG
195 AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * *
2785761 GTCGGACCGGACTGAGGGTTGCGGCAGCAAGATCGGTAGCACGTAGGGGGGACCCGATCGATCTG
260 ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATC-C
* * * * * ** *
2785826 CGACTTGTGCATCCTGCCCCTCTGGCCGGTTGAGCTCCTACACGCTCGTTTCGTGGGTTGATTTA
324 CGGCTTGAGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * * **
2785891 GGCATAC-GAGTTTATTCCCAGTCTAAGAACATGGAGTTCATTCCCAGTGTAAGATCAGATTGGA
389 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCAGA
* ** * * *
2785955 CCGAGGGTTACAGGTATACATGTTGGGCTAGGGCATGTGCTGGTG-TCACATTTTTTTTTTGCCC
454 CCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-ACA-TTTTTTTCT-CCC
* *
2786019 GGGGCA-C--CATC---G----CCGGAGAACCTGACCGGTGGCATTGGGGTTTCGGCGATTGGGG
516 GGGGCACCATCATCGGAGCATCCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATT-GGG
* * *
2786074 GGGCCGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCACCT
580 GGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
2786139 ATCCTTCATCAAACCTCAAGAACTCA-AACCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
645 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
2786203 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
710 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * * * * *
2786268 CATCGAGTTTTTACCTGAATTTTTTTGTACGTGCCAAAAAAAATACAAGGATCATGTCTACCAAG
775 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** *
2786333 TTTGGGGGAAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCGAACCGTAAA
840 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
* *
2786386 AATTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* *
2786451 AAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGGTAGAAATATGAAGATG
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* *** *
2786516 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCTCCTCTCTGGTAAGCTTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* *
2786581 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCATAGGCATACGGAGTTCATTCTCAGTCTAAGA
196 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * * *
2786646 TCAGACCGGACCAAGGGTTGTGGCAGCAAGATCAGCAGCATGTAGGGGCAGACTCGACCGATCCC
261 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGG-GGACCCGATCGAT-CC
* * * * * *
2786711 CAGCTT-ACACATCCTGCCCCTCTGG-TCGGTTGAGCGCCCGTATGCTCGTTTCTTGGGTTGACT
324 CGGCTTGA-GCATCCTGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* *
2786774 TAGGCATACAGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGA-CT
387 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATC-
* * * * * * ** *
2786838 AAACTGAAGGTTATGGGTGCACATACTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCC
451 AGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACA-TTTTTTTCTCC
* ** * * * * * *
2786903 CGGGGCACCATC-GCTGGAGCATCGTTGGAGAACTTAACAGGTGGCATTAGGGTTCCGACGATT-
515 CGGGGCACCATCATC-GGAGCATC-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTG
* *
2786966 ----G-GGGGGGTGTGCACACCTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
578 GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
2787026 TTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
643 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
2787091 CTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCCTGTG
708 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
* *
2787156 CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCA
773 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
2787221 AGTTCGGGGCCAAAACTCCTTCTGAAAAAATTTTGAAAAAATCCCGAACCATAAA
838 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
** * *
2787276 AAGTTTCAAAAATTATGAAAAATAGAAAACGGGTCATCTTGCCATGAAACTTCACATGAAGGCTT
1 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* *
2787341 AAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATG
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* * * * * *
2787406 TTCCTGAACCCACCTACCACCTTATGGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGGCATA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
*
2787471 GTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
196 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * *
2787536 TTAGACCGGATCAAGGGTTGTGGTAGCAAGATCGACAGCACGTA-GGGGGACCCGATCGATCCC
261 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCC
2787599 CGGTGTCATG
Statistics
Matches: 8047, Mismatches: 998, Indels: 351
0.86 0.11 0.04
Matches are distributed among these distances:
875 1 0.00
876 1 0.00
878 4 0.00
879 488 0.06
880 464 0.06
881 287 0.04
882 289 0.04
883 213 0.03
884 1030 0.13
885 198 0.02
886 117 0.01
887 4 0.00
888 12 0.00
889 85 0.01
890 500 0.06
891 151 0.02
892 77 0.01
893 536 0.07
894 760 0.09
895 1090 0.14
896 813 0.10
897 768 0.10
898 148 0.02
899 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCCG
GCTTGAGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCAGACC
GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTTTCTCCCGGGGC
ACCATCATCGGAGCATCCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGCGG
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
Found at i:2783257 original size:26 final size:26
Alignment explanation
Indices: 2783221--2783273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2783211 GTTGACTTAG
*
2783221 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2783247 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2783273 G
1 G
2783274 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2785032 original size:26 final size:26
Alignment explanation
Indices: 2784996--2785048 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2784986 GTTGACTTAG
*
2784996 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2785022 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2785048 G
1 G
2785049 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2793379 original size:26 final size:26
Alignment explanation
Indices: 2793339--2793417 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
2793329 GTTGACTTAG
*
2793339 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
2793365 GCATATGGAGATCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
* *
2793391 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2793417 G
1 G
2793418 ATCGAACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:2799213 original size:26 final size:26
Alignment explanation
Indices: 2799182--2799234 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2799172 GTTGACTTAG
*
2799182 GCATATTGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
2799208 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2799234 G
1 G
2799235 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:2801019 original size:26 final size:26
Alignment explanation
Indices: 2800967--2801019 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
2800957 GTCGACTTAG
* ** *
2800967 GCATACAGAGTCCATTCCCTTTTTAA
1 GCATACAAAGTCCATTCCCAGTGTAA
*
2800993 GCATACAAAGTTCATTCCCAGTGTAA
1 GCATACAAAGTCCATTCCCAGTGTAA
2801019 G
1 G
2801020 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTCCATTCCCAGTGTAA
Found at i:2801887 original size:26 final size:26
Alignment explanation
Indices: 2801857--2801909 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2801847 GTTGACTTAG
*
2801857 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2801883 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2801909 G
1 G
2801910 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2803581 original size:897 final size:893
Alignment explanation
Indices: 2798581--2804394 Score: 7251
Period size: 890 Copynumber: 6.5 Consensus size: 893
2798571 NNNNNNNNNN
* * * *
2798581 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGGCCATTAAAGTGTCTGGAATAGGGACAGT
1 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-GCCATTAAAGTGTCTGAAATGGGGACACT
* * * * *
2798646 TTTTTCAAATGTTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
65 TTTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
2798711 ACAAAAATACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACTCCTTCTGAAAAAATTTTACAA
130 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* ** * * *
2798775 AAATCTCGAATTGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
195 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
* * ** *
2798840 ACTTCATATGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTAATG
260 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
* *
2798905 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
325 GAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
* ** * * * *
2798970 TCTCTCTGGCCGGCACAGTGCTCACCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGT
390 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * *
2799035 TCATTACCAGTCTAAGAAT-GGACCAGACCAAGGGTTGTGGTAGCAGAATCGACAGCACGCAGGG
455 TCATTCCCAGTCTAAG-ATCAGACCGGACTAAGGGTTGTGGTAGTAGGATCGACAGCACGCA-GG
* * * * * **
2799099 GGGACTCGACCGATCCCTAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCTTCACGCTCG
518 GGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* ** *
2799164 TTTCATTGGTTGACTTAGGCATATTGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAG
583 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * *
2799229 TGTAAGATCGGACCGGATAGAGGGTT-TCAGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCC
648 TGTAAGATCAGACCGGACCGAGGGTTGT-GGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
* * * * * *
2799293 ACA--TGTTTTCACCCGGGGCACCATCGTCGGAGCATCG-CTAGAGAACCTGACCGGCGGCATTA
712 ACATTTTTTTTCGCCC-GGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGACATT-
* ** *
2799355 GGG-TTTCGACGATTGGGGGGCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAG
774 GGGATTCCGACGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
2799419 CCCCTATATTGGCCGCCTATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAA
839 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
2799474 AGAGCATTTGAGATTTTACAGTTTTGCTTCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
1 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * * *
2799539 TTTTCAAATGGTCACAAAATCCAGTATACTTCGAGTTTTCAGTTGAATTTTTTTATGCATGCCAA
66 TTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** * *
2799604 AAAAATTACAAGGATCATGTCTATTAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTAAAAAA
131 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAA
* * ** * *
2799669 AAATCCTGAATCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
195 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
* * *
2799734 ACTTCACATGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATG
260 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
* * *
2799799 GAAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCACATCCCG
325 GAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
* * * *
2799864 TCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGACT
390 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * *
2799929 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGTAGGATTGGCAGCACACAGGGG
455 TCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGG
* * * * * *
2799994 GACCCGACCGATCCCCGGTTTACGCATCCTGACCCTCTGGCCGGCTGAGTGCCCGCATGCTCGTT
520 GACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
2800059 TC-------G---T--G------G-G----TT--CAGT-TAGGCATACGGAGTTGATTCCCAGTG
585 TCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTG
* * * *
2800098 TAAGATTAGATCGGA-CGACGGGTTGTGGGTGCACATGCTGAGCTCGAGCGTGTGCTGGTGCCAC
650 TAAGATCAGACCGGACCGA-GGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCAC
* * *
2800162 A-TTTTTTTC-CCTCAGGGCACCATCGCCGGAGCATCGCCGAAGAAACCTGATCGACTG-CA-TG
714 ATTTTTTTTCGCC-C-GGGCACCATCGCCGGAGCATCGTCGGAG-AACCTGACCGAC-GACATTG
* * * *
2800223 GG-GTCCGACGATTTGGGGGGGCGGGAGGGGGGTTCGTGCCCACATTGAGTGTACGATGGGTGCT
775 GGATTCCGACGA-TT----GGG-GGGTGGGGGG-T-GTGCGCACA-TGA-TGTGCGATGGGTGCT
* * * * *
2800287 AGTACTTGGCCCTTATTATTGGCCCCCTGTCTCTTAATCAAAAACCTCTAGAACTTCACAACCCC
830 GGTACTTGGCCCTTA-TATTGGCCCCCTATC-CCTCATC--AAACCTCGAGAAC-TCAC-ACCCC
2800352 CTTAA
889 CTTAA
2800357 AGAGCATTTGAGA-TTTACAGGTTTGCTG-CAGTAGCCATTTAAAGTGTCTGAAAATGGGGACAC
1 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTG-AAATGGGGACAC
*
2800420 TTTTTTTCAAATGGTCCACAAAAATCCGGTACACTTTC-ACGTTTTTAGCTGAATTTTTTTAGTG
64 -TTTTTTCAAATGGT-CAC-AAAATCCTGTACA-TTTCGA-GTTTTTAGCTGAATTTTTTT-GTG
* * *
2800484 CA-GCCAAAAAAAAATACAAGGATTCAACGGTCTGCCAAGTGTGGGGCC-AAA-TCCTTTCTAAA
123 CATGCC-AAAAAAAATACAAGGA-TC-AC-GTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAA
* * ** *
2800546 AAAATTTTAAAAAAAATCTCGAACCGTAAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTC
183 AAAATTTT-AAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTC
* *
2800611 GTCTTGCCAAGAAACTTCACATGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAA
247 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
2800676 AGGCATTGGCAT-GATACAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCATG
312 TGGCATTGGCATAGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
* * * ** *
2800740 ACTTTCGCATCCCGCCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTTATTTCGTTGGTTGGCT
376 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * *
2800805 TAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCGAACCT-AGGGTTGTGGTAGAAGGATC
441 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTAAGGGTTGTGGTAGTAGGATC
* * * * * *
2800869 GATAGCATGTAGGTGGGGACCCGGCCAAT-CCTCGGCTTGCGCATCCTGCCCCTCTGGCCGACTG
505 GACAGCACGCA-G-GGGGACCCGACCGATCCCT-GGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * * ** *
2800933 AGCGCTCGCACGCTCGTTTCATGGGTCGACTTAGGCATACAGAGTCCATTCCCTTTTTAAGCATA
567 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
** ** * *
2800998 CAAAGTTCATTCCCAGTGTAAGATCAGACCGGATTGAGGGTTGCGGGCGCACATGCTGGGCTCGA
632 CGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGA
* * *
2801063 GCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCAGCATCGCTGGAGCATCGTCGAAGAACCT
697 GCATGTGCTGGTGCCACATTTTTTTTCGCCC-GGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * *
2801128 GACC-A-GCAGCATTGGGGTTCTGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATG
761 GACCGACG-A-CATTGGGATTCCGACGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATG
* *
2801191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACAGCCC
824 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
2801256 CTTAA
889 CTTAA
* * * * *
2801261 AAAGCATTTGAAATTTTACAGGTTTCCTGCCAATAGCCATTAAAGTGTCTGAAATGTGGACACTT
1 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
2801326 TTTTCAAATGGTCACAAAATCCTGTACACTTT-GAGTTTTTA-CTTGAATTGTTTTGTGCATGCC
66 TTTTCAAATGGTCACAAAATCCTGTACA-TTTCGAGTTTTTAGC-TGAATTTTTTTGTGCATGCC
* *
2801389 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAA
129 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * *
2801454 AAAATCCCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
194 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGA
** *
2801519 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGTAAACCATAAAAATGGCATTGGCAT
259 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * **
2801584 AG-TGTAAATATGAAGATGTGCCTAAACCCACCTACCCCCCTATCGATCCACAGCTTGCGCATCC
324 AGAAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
* * ** * * *
2801648 CGCCTCTCTGGCTGGCGTAGTGCCCGCACGCCCATTTGTTTCGTC----AG-TT-GGCATATGGA
388 CGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * **
2801707 GTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGTAGGATTGGTAGCACGCAGG
453 GTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGTAGTAGGATCGACAGCACGCA-G
* * * * * *
2801772 GAGGGACTCGGCCGATCCTTGACTTGTGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
517 G-GGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
2801837 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCC
581 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
2801902 AGTGTAAGATC-GAACCAGACCGAGCGTTGTGGGTGCACATGCTGGGCTC-AGGCATGTACTGGT
646 AGTGTAAGATCAG-ACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGA-GCATGTGCTGGT
* * * * * *
2801965 GCCACAATTTTTTTTCGCCCGGGGCACCATCGTCAGAGCATCATCGGAGAACCGGACAGACGGCA
709 GCCAC-ATTTTTTTTCGCCC-GGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGACA
* * * *
2802030 TTAGGATTCCGACGAATAGGGGGTGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
772 TTGGGATTCCGACGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
2802095 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCGCATAA
837 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
2802152 AGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGT-ACTGAAATGGGGACACTT
1 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
2802216 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
66 TTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
2802281 AAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACTGCTTCTAAAAAAATTTTAAAAA
131 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
2802346 AAT------CC-----------C--AAATCGT-AAAAAGTAGAAAATGAGTCGTCTTGCCATGAA
196 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAATGAGTCGTCTTGCCATGAA
*
2802391 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
260 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
*
2802456 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
325 GAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
* * * * *
2802521 TCTCTTTGGCCTGCATAGTGCCCGCCCGCCCGCTCGTTACGTCGGTTGGCTTAGGCATACGGAGT
390 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * * * *
2802586 TTATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGCAACAAGATCGGCAGCATGTAGGGG
455 TCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGG
* * * * *
2802651 GCACCCAACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACGCGCTCGT
520 G-ACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
2802716 TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGT
584 TTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * *
2802781 GTAAGATCGGACCGAACCAAGGGTTGTGGGTGCACATGCTGGGCTTGGGCATGTTCTGGTGCCAC
649 GTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCAC
* **
2802846 ATTTTTTTTCGCCCGGTGCACCATCGCCGGAGCGTCGTCGGAGAACCTGACCGGTGACATTGGGA
714 ATTTTTTTTCGCCCGG-GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGA
* * *
2802911 TTCCGGCGATTGGGGGGGTGGGGGGTGTGCGCACATGTTGTACGATGGGTGCTGGTACTTGGCCC
778 TTCCGACGATT-GGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * * ** *
2802976 TTATATTAGCCCCATATCCCTCATCAAACCTCAAGAGTTCACACCCCCTGAA
842 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
2803028 AGACCATTCGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
1 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-T
* *
2803093 TTTTTCAAATGGTCACAAAATCCTGTACGTTTCGAGTTTATAGCTGAATTTTTTTGTGCATGCCA
65 TTTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * * *
2803158 ACAAAAATTCAAGGATCACGTCCACCAAGTTTGGGTCCAAAACACCTTCTGAAGAAATTTTAGAA
130 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
*
2803223 AAATCCCGATCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
195 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
* *
2803288 ACTTCACATGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
260 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
*
2803353 GAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCG
325 GAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
* *
2803418 CCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGT
390 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * *** * *
2803483 TCATTACCAGTATAAGATCAGACCGGATTAAGGGTTACAGTGGTAGGATCAACAGCACGCAGAGG
455 TCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGTAGTAGGATCGACAGCACGCAG-GG
* ** *
2803548 GGACTCGACCGATCCCTGGCTTGCATATCCTGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGT
519 GGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
2803613 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGT
584 TTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
** * * * *
2803678 GTAAGATCAGATTGGACCGAGGGTTATAGGTGCACATGCTGGGCTCGAGCATGTGCTAGTGCCAT
649 GTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCAC
* * * *
2803743 ATTTTTTTTCGCCTGGG-------G-C--ACCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
714 ATTTTTTTTCGCCCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGAT
* *
2803798 TCGGACGATT-GGGGGTGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
779 TCCGACGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
2803862 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATAGCCCCCTTAA
844 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAA
* *
2803913 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAAACTT
1 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
2803978 TTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
66 TTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
2804043 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
131 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * *
2804108 AATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTTGTCTTGCCATGAAA
196 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
* * *
2804173 CTTCATATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAG
261 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAG
* * * *
2804238 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAGCGATCCACGGCTTGCGTATCCCGC
326 AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGC
* * * * *
2804303 CTCTCTAGCAGACATAGTGCCCGCCCGCCCGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTT
391 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
*
2804368 CATTCCCAGTCTAAGATCGGACCGGAC
456 CATTCCCAGTCTAAGATCAGACCGGAC
2804395 CGAGGGTTAT
Statistics
Matches: 4272, Mismatches: 514, Indels: 279
0.84 0.10 0.06
Matches are distributed among these distances:
866 2 0.00
867 87 0.02
868 38 0.01
869 13 0.00
870 8 0.00
871 184 0.04
872 4 0.00
873 9 0.00
874 4 0.00
875 74 0.02
876 311 0.07
877 104 0.02
878 136 0.03
879 4 0.00
881 22 0.01
882 28 0.01
883 36 0.01
884 485 0.11
885 69 0.02
886 51 0.01
887 24 0.01
888 20 0.00
889 15 0.00
890 658 0.15
891 223 0.05
892 164 0.04
893 122 0.03
894 289 0.07
895 1 0.00
896 230 0.05
897 468 0.11
898 14 0.00
899 22 0.01
900 20 0.00
901 17 0.00
902 4 0.00
903 14 0.00
904 32 0.01
905 30 0.01
906 19 0.00
908 5 0.00
909 14 0.00
910 29 0.01
911 4 0.00
912 8 0.00
913 1 0.00
914 9 0.00
915 6 0.00
917 3 0.00
918 87 0.02
919 42 0.01
920 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAG
AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGC
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGGG
ACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGT
AAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAT
TTTTTTTCGCCCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGATTC
CGACGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
Found at i:2803660 original size:26 final size:26
Alignment explanation
Indices: 2803630--2803682 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2803620 GTTGACTTAG
2803630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2803656 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2803682 G
1 G
2803683 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2804250 original size:884 final size:886
Alignment explanation
Indices: 2800075--2804394 Score: 5373
Period size: 884 Copynumber: 4.8 Consensus size: 886
2800065 GTTCAGTTAG
* * * *
2800075 GCATACGGAGTTGATTCCCAGTGTAAGATTAGATCGGA-CGACGGGTTGTGGGTGCACATGCTGA
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGA-GGGTTGTGGGTGCACATGCTGG
* * * *
2800139 GCTCGAGCGTGTGCTGGTGCCACA-TTTTTTTC-CCTCAGGGCACCATCGCCGGAGCATCGCCGA
65 GCTCGAGCATGTGCTGGTGCCACATTTTTTTTCGCC-C-GGG-AGCA-C-CC--AG--TCGTCGG
* * * * * *
2800202 AGAAACCTGATCGACTGCA-TGGG-GTCCGACGATTTGGGGGGGCGGGAGGGGGGTTCGTGCCCA
121 AG-AACCTGACCGACGGCATTGGGATTCGGACGA-TT----GGG-GGGTGGGGGG-T-GTGCGCA
* * * * *
2800265 CATTGAGTGTACGATGGGTGCTAGTACTTGGCCCTTATTATTGGCCCCCTGTCTCTTAATCAAAA
177 CA-TGA-TGTGCGATGGGTGCTGGTACTTGGCCCTTA-TATTGGCCCCCTATC-CCTCATC--AA
2800330 ACCTCT-AGAACTTCACAACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTG-CAGTAGC
236 ACCT-TGAGAAC-TCAC-ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
2800392 CATTTAAAGTGTCTGAAAATGGGGACACTTTTTTTCAAATGGTCCACAAAAATCCGGTACACTTT
298 CA-TTAAAGTGTCTG-AAATGGGGACAC-TTTTTTCAAATGGT-CAC-AAAATCCTGTACAC-TT
*
2800457 C-ACGTTTTTAGCTGAATTTTTTTAGTGCA-GCCAAAAAAAAATACAAGGATTCAACGGTCTGCC
357 CGA-GTTTTTAGCTGAATTTTTTT-GTGCATGCC-AAAAAAAATACAAGGA-TC-AC-GTCTACC
* * *
2800520 AAGTGTGGGGCC-AAA-TCCTTTCTAAAAAAATTTTAAAAAAAAT-CTCGAACCGTAAAAAATTT
416 AAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTT-AAAAAAATCCT-GAACCGTAAAAAGTTT
** * *
2800582 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACATGAAGGCTTAAGGGA
478 CAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
* * * * *
2800647 CCATTCTATGAATTTACAAGCCATAAAAAAGGCATTGGCAT-GATACAAATATGAAGATGTGCAT
543 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAG-CAGAAATATGAAGATGTGCCT
* * *
2800711 AAACCCACCTACCACCCTATCGATCCATGACTTTCGCATCCCGCCTCTCTGGCCGGCGTAGTGCT
607 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC
** * * **
2800776 CGCCCGCCCGCTTATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGA
672 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
2800841 CCGAACCT-AGGGTTGTGGTAGAAGGATCGATAGCATGTAGGTGGGGACCCGGCCAAT-CCTCGG
737 CCGGA-CTAAGGGTTGTGGTAGTAGGATCGACAGCACGCA-G-GGGGACCCGACCGATCCCT-GG
* * *
2800904 CTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCTCGCACGCTCGTTTCATGGGTCGACTTAGGC
798 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* ** *
2800969 ATACAGAGTCCATTCCCTTTTTAA
863 ATACAGAGTTCATTCCCAGTCTAA
** ** * *
2800993 GCATACAAAGTTCATTCCCAGTGTAAGATCAGACCGGATTGAGGGTTGCGGGCGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTGGG
* *
2801058 CTCGAGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCAGCATCGCTGGAGCATCGTCGAAG
66 CTCGAGCATGTGCTGGTGCCACATTTTTTTTCGCCC-GGG-AGCA-C-C--CAG--TCGTCGGAG
* * * *
2801123 AACCTGACC-AGCAGCATTGGGGTTCTGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGC
123 AACCTGACCGA-CGGCATTGGGATTCGGACGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGC
*
2801187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACA
187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * * * *
2801252 GCCCCTTAAAAAGCATTTGAAATTTTACAGGTTTCCTGCCAATAGCCATTAAAGTGTCTGAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
2801317 TGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTA-CTTGAATTGTTTTG
317 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTG
*
2801381 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
381 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * * *
2801446 ATTTAAAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
446 ATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
** *
2801511 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGTAAACCATAAAAATGGC
511 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * **
2801576 ATTGGCATAG-TGTAAATATGAAGATGTGCCTAAACCCACCTACCCCCCTATCGATCCACAGCTT
576 ATTGGCATAGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
* * ** * *
2801640 GCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCGCACGCCCATTTGTTTCGTC----AG-TT-GG
640 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * **
2801699 CATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGTAGGATTGGTAG
705 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGTAGTAGGATCGACAG
* * * * * *
2801764 CACGCAGGGAGGGACTCGGCCGATCCTTGACTTGTGCATCCTACCCCTCTGGCCGGCTGAGCGCC
770 CACGCA-GG-GGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
2801829 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
833 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
2801883 GCATACGGAGTTCATTCCCAGTGTAAGATC-GAACCAGACCGAGCGTTGTGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAG-ACCGGACCGAGGGTTGTGGGTGCACATGCTGG
* *
2801947 GCTC-AGGCATGTACTGGTGCCACAATTTTTTTTCGCCCGGG-GCACCATCGTCAGAGCATCATC
65 GCTCGA-GCATGTGCTGGTGCCAC-ATTTTTTTTCGCCCGGGAGCA-C--C--C--AG--TCGTC
* * * * * * *
2802010 GGAGAACCGGACAGACGGCATTAGGATTCCGACGAATAGGGGGTGGGGGATGTGCGCACATGATG
119 GGAGAACCTGACCGACGGCATTGGGATTCGGACGATTGGGGGGTGGGGGGTGTGCGCACATGATG
2802075 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
184 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* * * *
2802140 ACACCCGCATAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGT-ACTGAA
249 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
2802204 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
314 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
2802269 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACTGCTTCTAAAA
379 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
2802334 AAATTTTAAAAAAA---T---CC-----------C--AAATCGT-AAAAAGTAGAAAATGAGTCG
444 AAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAATGAGTCG
2802379 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
508 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
2802444 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
573 GGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
* * * * *
2802509 TTGCGCATCCCGTCTCTTTGGCCTGCATAGTGCCCGCCCGCCCGCTCGTTACGTCGGTTGGCTTA
638 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * *
2802574 GGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGCAACAAGATCGGC
703 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGTAGTAGGATCGAC
* * * * *
2802639 AGCATGTAGGGGGCACCCAACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGC
768 AGCACGCAGGGGG-ACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * *
2802704 CCACGCGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
832 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
2802759 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCGAACCAAGGGTTGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTGGG
* * * *
2802824 CTTGGGCATGTTCTGGTGCCACATTTTTTTTCGCCCGGTGCACCATCGCCGGAGCGTCGTCGGAG
66 CTCGAGCATGTGCTGGTGCCACATTTTTTTTCGCCCGG-G-AGCA-C-CC--A--GTCGTCGGAG
** * * *
2802889 AACCTGACCGGTGACATTGGGATTCCGG-CGATTGGGGGGGTGGGGGGTGTGCGCACATGTTGTA
123 AACCTGACCGACGGCATTGGGATT-CGGACGATT-GGGGGGTGGGGGGTGTGCGCACATGATGTG
* * ** **
2802953 CGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCATATCCCTCATCAAACCTCAAGAGTTCAC
186 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * *
2803018 ACCCCCTGAAAGACCATTCGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
251 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
2803083 GGGGACACTTTTTTTCAAATGGTCACAAAATCCTGTACGTTTCGAGTTTATAGCTGAATTTTTTT
316 GGGGACAC-TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
2803148 GTGCATGCCAACAAAAATTCAAGGATCACGTCCACCAAGTTTGGGTCCAAAACACCTTCTGAAGA
380 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
2803213 AATTTTAGAAAAATCCCGATCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
445 AATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
*
2803278 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGG
510 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2803343 CATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
575 CATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
* * *
2803408 ACGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGG
640 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *** * *
2803473 CATACGGAGTTCATTACCAGTATAAGATCAGACCGGATTAAGGGTTACAGTGGTAGGATCAACAG
705 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGTAGTAGGATCGACAG
* ** *
2803538 CACGCAGAGGGGACTCGACCGATCCCTGGCTTGCATATCCTGCCCTTCTGGCCGGCTGAGCGCCC
770 CACGCAG-GGGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
*
2803603 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** * *
2803656 GCATATGGAGTTCATTCCCAGTGTAAGATCAGATTGGACCGAGGGTTATAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTGGG
* * *
2803721 CTCGAGCATGTGCTAGTGCCATATTTTTTTTCGCCTGGG-GCA-CCA-TCGTCGGAGAACCTGAC
66 CTCGAGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGAGCACCCAGTCGTCGGAGAACCTGAC
* *
2803783 CGACGGCATTGGGGTTCGGACGATT-GGGGGTGGGGGGTGTGCGTACATGATGTGCGATGGGTGC
131 CGACGGCATTGGGATTCGGACGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
2803847 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATAGCCCCCTTA
196 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCCTTA
* *
2803912 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAAACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
2803977 TTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTAAATTTTTTTGTGCATGCCA
325 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
2804042 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
390 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* *
2804107 AAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTTGTCTTGCCATGAA
455 AAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
* * *
2804172 ACTTCATATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
520 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
* * *
2804237 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAGCGATCCACGGCTTGCGTATCCCG
585 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
* * * * *
2804302 CCTCTCTAGCAGACATAGTGCCCGCCCGCCCGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGT
650 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
*
2804367 TCATTCCCAGTCTAAGATCGGACCGGAC
715 TCATTCCCAGTCTAAGATCAGACCGGAC
2804395 CGAGGGTTAT
Statistics
Matches: 2984, Mismatches: 345, Indels: 180
0.85 0.10 0.05
Matches are distributed among these distances:
870 5 0.00
871 184 0.06
872 1 0.00
873 1 0.00
875 53 0.02
876 311 0.10
877 80 0.03
878 125 0.04
884 471 0.16
885 69 0.02
886 34 0.01
888 4 0.00
889 7 0.00
890 366 0.12
891 195 0.07
892 2 0.00
894 2 0.00
895 1 0.00
896 228 0.08
897 469 0.16
898 14 0.00
899 21 0.01
900 22 0.01
901 14 0.00
902 3 0.00
903 14 0.00
904 31 0.01
905 30 0.01
906 19 0.01
908 5 0.00
909 14 0.00
910 28 0.01
911 3 0.00
912 8 0.00
913 1 0.00
914 9 0.00
915 3 0.00
917 1 0.00
918 87 0.03
919 40 0.01
920 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGAGCACCCAGTCGTCGGAGAACCTGAC
CGACGGCATTGGGATTCGGACGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
AATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGC
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGGG
ACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:2808370 original size:26 final size:26
Alignment explanation
Indices: 2808341--2808393 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
2808331 CAGGTCCGAT
* * *
2808341 CTTACATTGGGAATGACCTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
2808367 CTTAGACTAGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCCGTATG
2808393 C
1 C
2808394 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:2809286 original size:26 final size:26
Alignment explanation
Indices: 2809235--2809287 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2809225 CTGGTTCAAT
**
2809235 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
2809261 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
2809287 C
1 C
2809288 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:2813120 original size:26 final size:26
Alignment explanation
Indices: 2813082--2813134 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2813072 CCGGTTCGAT
* *
2813082 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
2813108 CTTAGACTAGGAATTAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
2813134 C
1 C
2813135 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:2814900 original size:26 final size:26
Alignment explanation
Indices: 2814849--2814901 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2814839 AAAGTCTGAT
**
2814849 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
2814875 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
2814901 C
1 C
2814902 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:2815897 original size:885 final size:887
Alignment explanation
Indices: 2812178--2815897 Score: 4862
Period size: 885 Copynumber: 4.2 Consensus size: 887
2812168 CCCCCGGTCT
* ** * *
2812178 GATCTTACACTGGGAATGAACTCCGTATGCCAAGACTGGGAATGAACTCCATATGCCTAAGTCAA
1 GATCTTACACTGGGAATGAACTTCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
2812243 CCCACGAAACAAGCGTGCCGGCGCTCTA-CTGACCAGAGAGGCAAGATGCACAAG-TCGAGGATC
66 CCCACGAAACGAGCGTGCGGGAGCTC-AGCTGACCAGAGGGGCAGGATGCACAAGCT-GGGGATC
* ** * * * *
2812306 GGCCGGGTCCCCCCTGTGTGCAGTCGATCTTGCTGTTGCAACCCTCAGTCTGGTCCGATCTTAGA
129 GGTCGGGTCCCCCCTACGTGCTGCCGATC-T-CTGCTACAACCCTCAGTCTGGTCCGATCTTAGA
* * *
2812371 CTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGGCAGGCACTACATCA
192 CTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCACTACACCA
* * *
2812436 GCTAGAGAGGTGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
257 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** * *
2812501 ATATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTGAATTCATCCAATGGTCCCTTAAGCCTT
322 ATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
2812566 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTATGA
387 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGA
* * * *
2812631 TTCGGGATTTTTCTAAAATTTTTTCAGAAGGAGTTTTGGCCACAAACTTGGTAGACGTGGTCCTT
452 TTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
2812696 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
517 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAGGATTTTGTGACC
* * *
2812761 ATTTGAAAAAAGCGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
582 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
*
2812826 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
647 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
2812891 CAAGTACAAGCACCCATCGTACATCATGTGCGCACACCCCCCTCCCGCCCCCCCAATCGTC-GGA
712 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCC-CCCGCCCCCCCAATCGTCTGGA
* * * *
2812955 ACACCAATGTCGCCAGTCAGGTTCTCTGGTGATGCTCCGGCGATGGTGCCCTAGGTGAAAAAAAA
773 ACCCCAA--T-GCC-GTC-GG---TCAGGT--T-CTCCGGCGATGGTGCCCCAGGCGAAAAAAAA
* * * * * * * *
2813020 ATGCGGT-ACCAGTACATGCCTGAGGCCAACATGTGCACCCACAACCTTCGGTCCG-GTTC
827 ATGCTGTCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGAGTCC
*
2813079 GATCTTACACTGGGAATGAAC-TCTGTATGCTTAGACTA-GGAATTAACTCCGTATGCCTAAGTC
1 GATCTTACACTGGGAATGAACTTC-GTATGCTTAGAC-AGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
2813142 AACCCATGGAACGAACGTGCGGGTGCTTATCTGACTAGAGGGGCAGGATGCACAAGCTGGGGATC
64 AACCCACGAAACGAGCGTGCGGGAGCTCAGCTGACCAGAGGGGCAGGATGCACAAGCTGGGGATC
* ** * * * * *
2813207 GATCGGGTCCCCCCCTTTGTGCTGCCAATCTCACTGCCACAACCGTCAGTCCGGTCCGATCTTAC
129 GGTCGGGT-CCCCCCTACGTGCTGCCGATCT--CTGCTACAACCCTCAGTCTGGTCCGATCTTAG
* * * * *
2813272 ACTGAGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACAAGCAGACGGGCGGGCACTACATC
191 ACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCACTACACC
* * * * *
2813337 GGCCAGAGTGGTGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTT
256 AGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
2813402 CATTTTTCAACCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
321 CATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
2813467 TCATGTGAAGTTTCATGGCGAGACGACT-GATTTTCTATTTTTCATGATTTTTGAAAC-TTTTAA
386 TCATGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * *
2813530 GGTTTGGGACTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTAATCC
450 GATTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
2813595 TTGTA-TTTTGTTGGCATGCATAAAAACACTCAGCTAAAAACTC-AAAGTGTACCA-AATTTTGT
515 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAA-TGTA-CAGGATTTTGT
*
2813657 GACCATCTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
578 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
*
2813722 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-AAATATAA
643 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * * * *
2813786 GGGCCAAGTACCACCACCCATCACATATCATGTGTGCACACCCCCTGCCCCCCCAATTG-CTAGA
708 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCTGGA
* * *
2813850 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGCCCCGGGC-AAAAAAAAATG-TGGCACC
773 ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCAGGCGAAAAAAAAATGCTGTCACC
* * * *
2813913 AGCACATG-CCGAGCCCAGCATGTGCCCCCGCAACCTTCGGTCT-AGTTC
838 AGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGAGTCC
* *
2813961 GATCTTACACTGGGAATGAACTTCATATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTACACTGGGAATGAACTTCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
2814026 CCCACGGAACGAGAGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGAGCTCAGCTGACCAGAGGGGCAGGATGCACAAGCTGGGGATCGG
* * * * * * * * *
2814091 GCGGGTTCCCCCTGCATGCTGTCGATC-CTGCTACCCCAACCCTCTGGCTGATCCAATCTTAGAC
131 TCGGGTCCCCCCTACGTGCTGCCGATCTCTGCTA---CAACCCTCAGTCTGGTCCGATCTTAGAC
* * * * *
2814155 TGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGGCGGGTGGGCACTACGCCAG
193 TGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCACTACACCAG
* *
2814220 CCAGAGAGGCGGGATGCACAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
258 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
2814285 TATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
323 TATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
2814350 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
388 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGAT
* * * *
2814415 TTGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGACCCAAACTTGGTACACGTGAACCTTG
453 TCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
2814480 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACCA
518 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAGGATTTTGTGACCA
*
2814545 TTAGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
583 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
* *
2814610 AATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
648 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
2814675 AAGTACCAGCACCCATCGCACATCTTGTGCGTACACCCCCC-CGCCCCCTATC-ACTGGAACCCC
713 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCTGGAACCCC
* * * * * *
2814738 AATCCCATCGGTCAAGTTCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCAG-CACCAGCAC
778 AATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCAGGCGAAAAAAAAATGCTGTCACCAGCAC
* ** * ** ** ** *
2814802 ATGCCTGAGCGTATCATGTGCACCCGTAACCCTCAAT-AAAGTCT
843 ATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGAGTCC
* *
2814846 GATCTTACACTGGGAATGAAC-TCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
1 GATCTTACACTGGGAATGAACTTC-GTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCA
* * ** * * *
2814910 A-CCAGCAAAACAAATGTGCGGGAGCTTAGCTGGCCAGAGGGACAGGATGCACAAG-TCGGGGAT
65 ACCCA-CGAAACGAGCGTGCGGGAGCTCAGCTGACCAGAGGGGCAGGATGCACAAGCT-GGGGAT
* * * ** * *
2814973 CGG-CTGGGTCCCCCTTACATGCTGCCGATCTTGCTGCTACAACCTTTTGTCTAGTCTGATCTTA
128 CGGTC-GGGTCCCCCCTACGTGCTGCCGATC-T-CTGCTACAACCCTCAGTCTGGTCCGATCTTA
* * *
2815037 GACTGGGAATGAACTCTGTAAGCCTAAGCCAA-CTGACGAAACGAGCGGGCGGGCGGGCACTACG
190 GACTGGGAATGAACTCCGTATGCCTAAGCCAATC-GACGAAACGAGCGGGCGGGCGGGCACTACA
* * *
2815101 CCGGCCAGAGAGGCGGGATGCGCTAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
254 CCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
2815166 TTTATATTTCTATCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
319 TTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
2815231 CTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
384 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
2815296 CGATTCGAGATTTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
449 CGATTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
2815361 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAGGATTTTGTG
514 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAGGATTTTGTG
* * *
2815426 ACCATTTGAAAAAGGTGTCCCCATTTCAGAC-CGTTTAATGCCTACTGGCAGCAAACCTGTAAAA
579 ACCATTTGAAAAAAGTGTCCCCATTTCAGACAC-TTTAATGGCTACTGGCAGCAAACCTATAAAA
*
2815490 TCTCAAATGCTCTTTAAGGGGGATGTGAGTTCTCGATGTTTGATGAGGGATAGGGGGCCAATATA
643 TCTCAAATGCTCTTTAAGGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
2815555 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAAATCGTC-G
707 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCC-AATCGTCTG
* *
2815619 GAACCCTAATGCCGTCGGTCAGGTTCTCTGGCGATGGTGCCCCAGGCGAAAAAAAAATG-TGTCA
771 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCAGGCGAAAAAAAAATGCTGTCA
* *
2815683 CCAGCACATGCCCAAGCCCAGCATGTGCATCC-CAACCCTCGGTCTGA-TCC
836 CCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGAGTCC
* * *
2815733 AATCTTACATTGGGAATGAACTTCATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTACACTGGGAATGAACTTCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAA
* * * **
2815798 TCCATGAAACGAGCGTGCGGGAGCTCAGCCGACCAGAGGGGCAGGATGTGCAAGCTGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGAGCTCAGCTGACCAGAGGGGCAGGATGCACAAGCTGGGGATCGG
* *
2815863 TCGAGTCCCCCCCTACGTGCTGCCTATC-CTGCTAC
131 TCGGGT-CCCCCCTACGTGCTGCCGATCTCTGCTAC
2815898 CGCAACCCTT
Statistics
Matches: 2470, Mismatches: 301, Indels: 112
0.86 0.10 0.04
Matches are distributed among these distances:
878 5 0.00
881 260 0.11
882 221 0.09
883 238 0.10
884 97 0.04
885 622 0.25
886 85 0.03
887 130 0.05
888 116 0.05
889 1 0.00
890 2 0.00
891 3 0.00
892 3 0.00
893 1 0.00
894 1 0.00
895 22 0.01
896 3 0.00
899 43 0.02
900 164 0.07
901 180 0.07
902 273 0.11
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GATCTTACACTGGGAATGAACTTCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGAGCTCAGCTGACCAGAGGGGCAGGATGCACAAGCTGGGGATCGG
TCGGGTCCCCCCTACGTGCTGCCGATCTCTGCTACAACCCTCAGTCTGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCACTACACCAGCCA
GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCG
GGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAGGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCTGGAACCCCAAT
GCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCAGGCGAAAAAAAAATGCTGTCACCAGCACATG
CCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGAGTCC
Found at i:2817139 original size:26 final size:26
Alignment explanation
Indices: 2817103--2817154 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2817093 TGTGGGTTGA
* *
2817103 CATACGGAGTTCATTCGCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
*
2817129 CATACGAAGTTCATTCCCAGTGTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
2817155 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:2818921 original size:26 final size:26
Alignment explanation
Indices: 2818884--2818936 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2818874 GTTGACTTAG
*
2818884 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
* *
2818910 GCATACGGAGTTCATTCACAGTGTAA
1 GCATACGAAGTTCATTCACAGTCTAA
2818936 G
1 G
2818937 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:2819171 original size:885 final size:886
Alignment explanation
Indices: 2817103--2821444 Score: 5676
Period size: 897 Copynumber: 4.9 Consensus size: 886
2817093 TGTGGGTTGA
* * * * *
2817103 CATACGGAGTTCATTCGCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCAGACCGGATC
1 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACC
* * * * * **
2817168 GAGGGTTGCGGGTCCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTTGCCCAAGG
66 GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCCGGGG
* * * *
2817233 CACCATCGTCGGAGCATCATCGGAGAAACTGACCGCCGGCATTGGTGTTCCGACGATTGGGGGGT
130 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGC
* * *
2817298 GGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATC
195 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
2817363 CCTCATTAAACCACCAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCC
260 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
2817428 AGTAGCCATTATAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAGTT
325 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
* * * *
2817493 TGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTAGCAAGTTT
390 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
*
2817558 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGT-AAAACTTTCAAAAATCG
455 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG
* * *
2817622 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTGAAGGGGCCATTGTAT
520 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
*
2817687 GAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCT
585 GAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCT
** * * * *
2817752 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTAG-CTGGCGTTGTGCCCGCCCGCTCG
650 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCCGACCGGCGTAGTGCCCGCCCGCCCA
* * ** **
2817816 CTCGTTTAGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAG
715 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACAAAG
* * * * * * *
2817881 GGTTGCGGCAGTAAGATCGACAACATGCA-GGGGGACCCGACAGATCCCCGTCTTGCACATCCTG
780 GGTTGCGGTAGTAGGATAG-TAGCACGCAGGGGGGA-CC-ACCGA----C--CTTGCACATCCTG
*
2817945 CCCCTTTGGCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
836 CCCC--T--CTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * *
2818000 CATACGGAGTTCATTCCTAGTCTAAGCAAACGGAGTTCATTCCCAGTGTAACATCAGATCGGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACC
* * * * *
2818065 GAGGGTTACGGGTGCACATGCTAGGCTCGGGCATATGCTGGTACAGCATTTTTTTTGCCCGGGGC
66 GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGGC
* * * *
2818130 ACCATCGTCGGAGCATCACCGGAGAACCTGATCGACGGCATTTGGGTTTCGACGATTGGGCGGG-
131 ACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGG-GGGC
* * * *
2818194 GCAGGGGGTGTGCGCACATGATGTGCAATTGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTAT
195 G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
2818259 CACTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
259 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
2818324 TAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCCCAAAATCCTATACACT
324 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
*
2818388 TCAAGTTTTTAGCTGAATTGTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
389 TCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
*
2818452 TTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
453 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
* *** *
2818517 CATGAAAAATAGAAAACGAGTTGCCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTT
518 CGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* *
2818582 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAAGTTCCTAAACCCAC
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
2818647 CTACCACCATATCGATCCACGGCTTGCACATCCCGCCTCTCCGACCGGCGTACTGCCCGCCCGTC
648 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCCGACCGGCGTAGTGCCCGCCCGCC
* * * * *
2818712 CGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTTCC-ATTCTAAGACCAAACCAGACT
713 CACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCCTAGTCTAAGATCAGACCAGAC-
* * * * *
2818776 AAAGGGTTGAGGTAGCAGGATTAGTAGCATGCAGGGGGGA-C-CCGA-CTTGCGCATCCTGCTCC
776 AAAGGGTTGCGGTAGTAGGA-TAGTAGCACGCAGGGGGGACCACCGACCTTGCACATCCTGCCCC
* * * *
2818838 TCTGGCCGGTTGAGCGTCCC-CACGTTCATTTCGTGGGTTGACTTAGG
840 TCTGGCCGGCTGAGC-ACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
2818885 CATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTGTAAGATCGGACCAGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACC
* * * **
2818950 GAGGGTTACGGGTCCACATGCTGGGCTGGGGCATGTGCTGGTGCTGCATTTTTTTCGCCCAAGGC
66 GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGGC
* *
2819015 ACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGCCATTGGGGTTCCGGCGATTGGGGGGAC
131 ACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGG-C
2819080 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
195 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
2819145 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCT
260 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
2819210 AGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
325 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
* * *
2819275 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGGTCATGTCTACCGAGTTT
390 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
2819340 AGGGCCAAAACTCCTTCTGAAAATATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
455 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG
2819405 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
520 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
*
2819470 GAATTTACAAGCCATAAAAATGGCACTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCT
585 GAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCT
** * ** * *
2819535 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTGGTCGGCGTAGTGCCTGCCCGCCCT
650 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCCGACCGGCGTAGTGCCCGCCCGCCCA
* * * * *
2819600 CTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTGAGATCAGACCAGACAGAG
715 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACAAAG
* *
2819665 GGTTGTGGTAGTAGGATCAGTAGCACACAGGGAGGGACCTGACCGATCCCCGGCTTGCACATCCT
780 GGTTGCGGTAGTAGGAT-AGTAGCACGCAGGG-GGGACC--ACCGA----C--CTTGCACATCCT
* * * * *
2819730 GCCCCTCTGGTCGGCTGAGAACCCGTACGCTCGTTTCGTGAGTTAACTTAGG
835 GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
2819782 CATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATGTAAGATCGGACCAGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACC
** * * ** * * * *
2819847 GAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATCTATTGCTGCCGTATTTTTTTCACTCGGGGC
66 GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGGC
* * * *
2819912 ACCATCACCGGAGCATCACTGGAGCATCGTCGAAGAACCTGACCGATGGCACTGGGGTTCCGACG
131 ACCAT---C---G--T--C-GGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * *
2819977 ATT-GCGGGCAGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATT
185 ATTGGGGGGC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* **
2820041 GGCCCCCTATCCCTCATCATACCTCGAGAACTCACACGTCCTTAAAGAGCATTTGAGATTTTACA
249 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
2820106 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
314 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * *
2820171 CCTGTACACTTTGATTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGT
379 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
2820236 CTACCAAGTTTGGGGCCGAAAA-TGCTTCTGAAAAAATTTTTAAAAAAT-TCTGAATCGTAAAAA
444 CTACCAAGTTTGGGGCC-AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC-GAACCGTAAAAA
* * * **
2820299 GTTTCAAAAAGCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACATGAAAACTTAA
507 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
* * ** *
2820364 AGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCACA-AAATATGAAGATTTG
572 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* * * * * * *
2820428 CCTAATCCCACCTACCAACCTATCGATCCATGGCTTGCGCATCCTGCTTCT-CTAGCCTGCGTAG
637 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCCGA-CCGGCGT--
* * *
2820492 AGCTCGCTCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATGCAGAGTTCATTCCTAGTCTA
699 AG-T-GCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
* * * *
2820557 AGATTAGACCGGATC-AAGGGTTGCGGAAGTAGGATAGGTAGCACGTAGGGGGGACCCGACCGAT
762 AGATCAGACCAGA-CAAAGGGTTGCGGTAGTAGGATA-GTAGCACGCAGGGGGGA-CC-ACCGA-
* * * *
2820621 CCCCAGCTTGCACATCCTGCCCCTCTGGTCGGCTGAGCTCCCGTACGCTCGTTTCATGGGTTGAC
822 ---C--CTTGCACATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
2820686 TTAGG
882 TTAGG
* * * * * *
2820691 CATACGGAGTTCATTCCCTGTCTAAGCATATGAAGTTCATTCCTAGTGTAAGATTGCACCAGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACC
* * * *
2820756 GAGGGTT--GGGATGCACATGCTGGGCTTGGGCATGTGGTGGTGCCACATTTTTTTTTCGCCTGG
66 GAGGGTTACGGG-TGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA--TTTTTTTCGCCCGG
*
2820819 GGCACCA---TC---G---C--CGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATTTGGGG
128 GGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TTGGGG
2820873 GGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
192 GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2820937 ATCCCTCATCAAACATCGAGAACTCACACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
257 ATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
2821002 TGCCAGTAGGCATTAAACG-GTCTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATCCTGTA
321 TGCCAGTAGCCATTAAA-GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
* * *
2821066 CATTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAA-AAAACTACAAGGATCACGTCTACCA
385 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
2821129 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCTCGAATCATAAAAAGTTTCAAA
450 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAA
*
2821194 AATCGTGAAAAATAGAAAACGAGTCATCTTGCCTTGAAACTTCACATGAAGGCTTAAGGGACCAT
515 AATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* * *
2821259 GGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGGAAGAAATATGAAGATGTGCCTAAACC
580 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* * * *
2821324 CA-CTACCACCCTATCGATCCACGACTTGCGCGTCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC
645 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCCGACCGGCGTAGTGCCCGCCC
* * **
2821388 GCCCATTCATTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
710 GCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
2821445 CAACCAAACT
Statistics
Matches: 3038, Mismatches: 345, Indels: 138
0.86 0.10 0.04
Matches are distributed among these distances:
883 57 0.02
884 5 0.00
885 395 0.13
886 382 0.13
887 211 0.07
888 158 0.05
889 128 0.04
890 11 0.00
893 1 0.00
896 204 0.07
897 590 0.19
898 67 0.02
899 26 0.01
900 9 0.00
903 1 0.00
905 1 0.00
906 66 0.02
907 396 0.13
908 76 0.03
909 141 0.05
910 112 0.04
911 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACC
GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGGC
ACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCCGACCGGCGTAGTGCCCGCCCGCCCAC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACAAAGG
GTTGCGGTAGTAGGATAGTAGCACGCAGGGGGGACCACCGACCTTGCACATCCTGCCCCTCTGGC
CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
Found at i:2819810 original size:26 final size:26
Alignment explanation
Indices: 2819781--2819833 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2819771 GTTAACTTAG
2819781 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2819807 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2819833 G
1 G
2819834 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2821525 original size:10 final size:10
Alignment explanation
Indices: 2821510--2821536 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
2821500 CGGTCCTCGA
2821510 CTTGCACCGG
1 CTTGCACCGG
2821520 CTTGCACCGG
1 CTTGCACCGG
2821530 CTTGCAC
1 CTTGCAC
2821537 ATCCTGCCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.11, C:0.41, G:0.26, T:0.22
Consensus pattern (10 bp):
CTTGCACCGG
Found at i:2821671 original size:26 final size:26
Alignment explanation
Indices: 2821600--2821664 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
2821590 TAGGCGAACG
2821600 GAGTTCATTCCCAGTCTAAGCATACA
1 GAGTTCATTCCCAGTCTAAGCATACA
2821626 GAGTTCATTCCCAGTCTAAGCATACA
1 GAGTTCATTCCCAGTCTAAGCATACA
2821652 GAGTTCATTCCCA
1 GAGTTCATTCCCA
2821665 ATGTAAGATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCATACA
Found at i:2830222 original size:26 final size:26
Alignment explanation
Indices: 2830170--2830222 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2830160 GTTGACTTAG
* *
2830170 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
2830196 GCATACAGAGTTCATTCCTAATGTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2830222 G
1 G
2830223 ATCGTACCAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2831982 original size:26 final size:26
Alignment explanation
Indices: 2831946--2831998 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2831936 GTTGACTTAG
*
2831946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2831972 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2831998 G
1 G
2831999 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2832330 original size:884 final size:881
Alignment explanation
Indices: 2828335--2832777 Score: 5754
Period size: 884 Copynumber: 5.0 Consensus size: 881
2828325 CGATCAATGG
* * *
2828335 CTTGCGCATCCTGCCCCTTTGGCCGGCTGAGCGCCCGCGCGCTCGTTTCGTGGGTTGACTTAGGC
1 CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTAGGC
* * *
2828400 ATACGGAGTTCATTCCCAGTCTAAGCATAC-GAAGTTCATTCC-AGCGTAAGATCGAACTGGATC
66 ATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCTAGTGTAAGATCGGACCGGATC
* * * *
2828463 GAGGGTTGCGGGTGCACATGCTGGACTCAGGCATGTGCTGGTGCTGCATTTTGTTTTCGCCCGAG
130 GAGGGTTGCGGGTGCACATGCTGG-CTCGGGCATGTGCTGGTGCCGCATTTT-TTTTCACCCGGG
* * * * * * * *
2828528 GCACCATCGCCAGAAAACCTGACCAGCGACATTAGGGTTTCGACGATTGGGGGAGCGGTTGGCAT
193 GCACCATCGCCGGAGAACCTGACCAACGGCATTAGGGTTCCGACGATTGGGGGGGCGGTGGGCGT
* *
2828593 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTTCTTATATTGGCCCCCTATCCCTCACCA
258 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCA
* * *
2828658 AACCTCGAAAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACTGGTTTGCTACCAGTAGCCA
323 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCA
*
2828723 TTAAAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCGAGTTTT
388 TTAAAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * *
2828788 TAGCTGAATTCTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTAGGGCTAA
453 TAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
* **
2828853 AACTGCTTCTGAAAAAATTTTAAAAAAATCTTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAAT
518 AACT-CTTCTGAAAAAATTTTAAAAAAATC-CGAATCGTAAAAAGTTTCAAAAATTATGAAAAAT
2828918 AGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
581 AGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
2828983 AAGCCATAAAAATGGCATTGGCTTGGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCT
646 AAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
2829048 ATCGATCCACGGCTTGCATATCTCGCCTCTCTGGCTGGCGTAGTGGCCGCCCACCCGCTCGTTTC
711 ATCGATCCACGGCTTGC--A-C-CGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTC
* ** * * *
2829113 ATCGGTTGGCTTAGGCATACGGAGTTTTTTCCCAGTCTAATATCAGATCAGAGCGAGGGTTGCAG
772 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCCGATCGAGGGTTGCAG
* **
2829178 CAGCAAGATC-GACAGCACGCAGGGGGGGA-CCGACCGATCCCCGA
837 CAGCAGGATCTG-CAGCACGCAGGGAAGGACCCGACCGATCCCCGA
* * ** *
2829222 CTTGTGCATCCTTCTCCTCTGGCCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
1 CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTAGGC
* * * ** * *
2829287 ATATGGAGTTCATTCTCAATCTAAGCATATGGAGTTCATTCCTAGTGTAAGATCAGACCGTATCG
66 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTGTAAGATCGGACCGGATCG
* * *
2829352 AGGGTTACGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTGTTTTTTTACCTGGGG
131 AGGGTTGCGGGTGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATT-TTTTTTCACCCGGGG
* ** * *
2829417 CACCATCGTCGGAGAAATTGACCAACGGCATTAGGATTCCGGCGATTGGGGGGGCGG-GGG-GTG
194 CACCATCGCCGGAGAACCTGACCAACGGCATTAGGGTTCCGACGATTGGGGGGGCGGTGGGCGTG
* ** * * *
2829480 TGCGCGCATGATGTGAAAT-TGTGGC-GGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCA
259 TGCGCACATGATGTGCGATGGGT-GCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCA
* * *
2829543 AACCAT-GAGAAGTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
323 AACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCC
* *
2829607 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAATCCTGTACACTTCGAGTTT
387 ATTAAAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * * *
2829671 TTAACTGAATTGTTTTGGGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTGGGGGGCA
452 TTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
* * *
2829736 AAACTCCTTTTAAAAAAATTTTAAAAAAATCCCGAGTCGTAAAAAGTTTCAAAAATTATGAAAAA
517 AAACT-CTTCTGAAAAAATTTTAAAAAAAT-CCGAATCGTAAAAAGTTTCAAAAATTATGAAAAA
* *
2829801 TAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
580 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * *
2829866 CAAGCTAGAAAAATGGCACTGGCATGGCAGAAATATGAAGATGTGCCAAAACCCACATACCACCC
645 CAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
2829931 TATCGAAT-CACGGCTTGCGCATCCCGCCTCTCTGGCAGGCATAATGCCCGCCCGCCCGCTTGTT
710 TATCG-ATCCACGGCTT--GCA--CCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTT
* *
2829995 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTACGATCAGA-CCGGAGT-GAGGGTT
770 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCC-GA-TCGAGGGTT
* * **
2830058 GCAGCAGCAGGAT-TGGTAGCACGTA--GAAGGGGACCC-AGTTGATCCCCGA
833 GCAGCAGCAGGATCT-GCAGCACGCAGGGAA--GGACCCGA-CCGATCCCCGA
* *
2830107 CTTGTGCATCCTACCCCTCTGGCCGGCTGAGCACCCGCGCGCTCATTTCGTGGGTTGACTTAGGC
1 CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTAGGC
* * ** *
2830172 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAATGTAAGATCGTACCACACCG
66 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTGTAAGATCGGACCGGATCG
* * * * **
2830237 AGTGTTGTGGGTGCACATACTGGGCTCAGGCATGTGCTGGTGCCATATTTTTTTTTCACCCGGGG
131 AGGGTTGCGGGTGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTTCACCCGGGG
* * ** *
2830302 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATT-GAGGGG
194 CACCAT---C---G---C--CGGAGAACCTGACCAACGGCATTAGGGTTCCGACGATTGGGGGGG
2830366 CGGTGGGCGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTA
248 CGGTGGGCGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTA
*
2830431 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACTGGTTTGCTG
313 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTG
* *
2830496 CCAGTAGCCATTAAAGTGTTTGAAAGAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
378 CCAGTAGCCATTAAAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
2830561 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGACCACGTCTACCAAGT
443 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
* **
2830626 TTAGGGCCAAAACTC--CTGAAAAAATTTT-AAAAAATCCTGAATCGTAAAAAGTTTTGAAAATT
508 TTGGGGCCAAAACTCTTCTGAAAAAATTTTAAAAAAATCC-GAATCGTAAAAAGTTTCAAAAATT
* * *
2830688 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGTGACCATTGTA
572 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
*
2830753 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACC
637 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACC
* ** * *
2830818 TACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGATGTAGTGGCCGCCCGCTC
702 TACCACCCTATCGATCCACGGCTT--GCA-C-CGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * * * *
2830883 GCTCGTTTCGTTGTTTGGCTTAGGCATACGGAGTTCCTTCCCAGTCTAAGGTCAGATCGGACCAA
763 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCCGATCGA
** * * **
2830948 GGGTTGCAGCAATAGGATCGGCAGCATGCAGGG--GGACCCGACCGATCTTCGA
828 GGGTTGCAGCAGCAGGATCTGCAGCACGCAGGGAAGGACCCGACCGATCCCCGA
* * * * *
2831000 CTTGTGCATCCTTCCCCTCTGGCCGGATGAGCACCTGCACGCTCATTTCGTGGGTTGACTTAGGC
1 CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTAGGC
** * * * * * * *
2831065 ATATAGAGTTCATGCTCAATCTAAGCATACGGAGTTCATTCTTAGTGTAAGATCAGACCGTATCG
66 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTGTAAGATCGGACCGGATCG
** * *
2831130 AGGGTTATGAGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTGTTTTTTCGCCCGGGG
131 AGGGTTGCGGGTGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATT-TTTTTTCACCCGGGG
* ** * * *
2831195 CACCATCGTCGGAGAAATTGACCAACGGCATTAGGATTCCCG-CGATTAGGGGGGTGG-GGG-GT
194 CACCATCGCCGGAGAACCTGACCAACGGCATTAGGGTT-CCGACGATTGGGGGGGCGGTGGGCG-
* *
2831257 TGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
257 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATC
* *
2831322 AAACCGT-GAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
322 AAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGC
* * *
2831386 CATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
386 CATTAAAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
2831451 TTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCC
451 TTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC
* *
2831516 AAAACTCTTTCTAAAAAAATTTTAAAAAAATCTCG-AGCTGTAAAAAGTTTCAAAAATTATGAAA
516 AAAACTC-TTCTGAAAAAATTTTAAAAAAATC-CGAATC-GTAAAAAGTTTCAAAAATTATGAAA
* *
2831580 AATAGAAAATGGGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
578 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
* * *
2831645 TACAAGCCATAAAAATGGCATTGGCATAGCAAAAATATGAAGATGTGCCTAAACCAACCTACCAC
643 TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
2831710 CCTATCGAAT-CACGGCTTGC-CCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTC
708 CCTATCG-ATCCACGGCTTGCACCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTC
* * * *
2831773 GTCAGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGATCCGATCGAGGGTTACGG
772 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCCGATCGAGGGTTGCAG
** * * * * *
2831838 CAGCAGGATCTGCAAAATGTAGGGAAGGACCCGATCGAACCTCGA
837 CAGCAGGATCTGCAGCACGCAGGGAAGGACCCGACCGATCCCCGA
* * ** * *
2831883 CTTGCGCATCCTGCCCCTTTGGCCGGCTGAGTGCCCACGCGGTCGTTTCGTGGGTTGACTTAGGC
1 CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTAGGC
* *
2831948 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGACCGGACCG
66 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTGTAAGATCGGACCGGATCG
* * * *
2832013 ACGGTTGCGGGTGCGCATGCTGGCCTTGGGCATGTGCTGGTGCCACATTTTTTCTTCACCCGGGG
131 AGGGTTGCGGGTGCACATGCTGG-CTCGGGCATGTGCTGGTGCCGCATTTTTT-TTCACCCGGGG
* ** * * *
2832078 CACCATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTTCGACGATTGGGGGGGCAGTGGGCGTG
194 CACCATCGCCGGAGAACCTGACCAACGGCATTAGGGTTCCGACGATTGGGGGGGCGGTGGGCGTG
* *
2832143 TGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAA
259 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAA
* *
2832208 ACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACTGGTTTGCTGTCAGTAGCCAT
324 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCAT
*
2832273 TAAAGTGTCTAAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
389 TAAAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
2832338 AGC-AGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCGA
454 AGCTA-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
* *
2832402 AACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
518 AACT-CTTCTGAAAAAATTTTAAAAAAATCC-GAATCGTAAAAAGTTTCAAAAATTATGAAAAAT
* *
2832467 AAAAAATGAGCCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
581 AGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
2832532 AAGCCATAAAAATGG-ATCGGGATGGCTGAAATATGAAGATGTGCCTAAACCCACGTACCACCCT
646 AAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* **
2832596 ATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGACGTAGTGCCCGCCCGGTCGCTCGTTTC
711 ATCGATCCACGGCTT--GCA-CC-GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTC
* * * ** *
2832661 ATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGA-CCAGA-CTAAGGGTTGC
772 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCC-GATC-GAGGGTTGC
* * * * *
2832724 AGCAGCAGGATCAGCTGCACGCAGGG-AGGA-CCGGCCAATCCCCGG
835 AGCAGCAGGATCTGCAGCACGCAGGGAAGGACCCGACCGATCCCCGA
*
2832769 CTTGCGCAT
1 CTTGTGCAT
2832778 NNNNNNNNNN
Statistics
Matches: 3084, Mismatches: 394, Indels: 157
0.85 0.11 0.04
Matches are distributed among these distances:
881 108 0.04
882 292 0.09
883 284 0.09
884 752 0.24
885 340 0.11
886 211 0.07
887 108 0.04
888 221 0.07
889 4 0.00
890 1 0.00
891 1 0.00
892 2 0.00
893 185 0.06
894 6 0.00
895 283 0.09
896 47 0.02
897 23 0.01
898 136 0.04
899 80 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTGTAAGATCGGACCGGATCG
AGGGTTGCGGGTGCACATGCTGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCA
CCATCGCCGGAGAACCTGACCAACGGCATTAGGGTTCCGACGATTGGGGGGGCGGTGGGCGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
TCTTCTGAAAAAATTTTAAAAAAATCCGAATCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAA
ATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCACCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCCGATCGAGGGTTGCAGCAGCAGGAT
CTGCAGCACGCAGGGAAGGACCCGACCGATCCCCGA
Found at i:2836970 original size:45 final size:45
Alignment explanation
Indices: 2836911--2837333 Score: 189
Period size: 45 Copynumber: 9.4 Consensus size: 45
2836901 GTGTAGGCTC
* * * * *
2836911 TTGCCTCGACCACCATCGATAGAAGATGGCCTCTGGTACGGGCGG
1 TTGCCTCGAACACCATCGACACAAGATGGCCTCTAGTGCGGGCGG
* * * * * * *
2836956 TTGCATCGAACACCATCGGCACATGCTAGCCCCTGGTGCGGGCGG
1 TTGCCTCGAACACCATCGACACAAGATGGCCTCTAGTGCGGGCGG
* * * * * *
2837001 TTACCTTGAACACCATCGACACATGCTGGGCCT-TAGTACGGACGG
1 TTGCCTCGAACACCATCGACACAAGAT-GGCCTCTAGTGCGGGCGG
* * * * * * * **
2837046 TTACCTCGACCATCATCGATAGAAGATGGCC-CTTGGTGTGGGCTC
1 TTGCCTCGAACACCATCGACACAAGATGGCCTC-TAGTGCGGGCGG
* * * ** *
2837091 TTGCCTCGACCACCATC-AGTAGAAGATGGCCTCTAGTGCATGTGG
1 TTGCCTCGAACACCATCGA-CACAAGATGGCCTCTAGTGCGGGCGG
* * * * *
2837136 TTGCATCAAACACCATCGACACATGCTGGCCCCTAGTGCGGGCGG
1 TTGCCTCGAACACCATCGACACAAGATGGCCTCTAGTGCGGGCGG
* ** * * ** *
2837181 TTGCCTTGAACACCATC-AGCACGTGCTGGGCCT-TGGTGCAAGTGG
1 TTGCCTCGAACACCATCGA-CACAAGAT-GGCCTCTAGTGCGGGCGG
* * * * *
2837226 TTGCCTC-AACCACCATCGACAGAAGATGGCC-CTTGGTGCAGACAG
1 TTGCCTCGAA-CACCATCGACACAAGATGGCCTC-TAGTGCGGGCGG
* * * * * *
2837271 TTACCTC-AAGCACCATCGACACAA-ATTGGTCTTTGGTGCCGACGG
1 TTGCCTCGAA-CACCATCGACACAAGA-TGGCCTCTAGTGCGGGCGG
2837316 TTGCCTCGAACACCATCG
1 TTGCCTCGAACACCATCG
2837334 GCATGTGCTG
Statistics
Matches: 285, Mismatches: 78, Indels: 30
0.73 0.20 0.08
Matches are distributed among these distances:
44 13 0.05
45 260 0.91
46 12 0.04
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.22
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGACACAAGATGGCCTCTAGTGCGGGCGG
Found at i:2837017 original size:90 final size:90
Alignment explanation
Indices: 2836864--2837197 Score: 267
Period size: 90 Copynumber: 3.7 Consensus size: 90
2836854 TGGTGTGGAT
* * * * * * ** ** * *
2836864 GGTTGCCTCGAGCACCATCGGCACAAGCTGACCCTTGGTGTAGGCTCTTGCCTCGACCACCATCG
1 GGTTGCATCGAACACCATCGACACATGCTGGCCCCTGGTGCGGGCGGTTGCCTTGAACACCATCG
*
2836929 ATAGAAGATGGCCTCTGGTACGGGC
66 ATAGAAGATGGCCTCTAGTACGGGC
* * *
2836954 GGTTGCATCGAACACCATCGGCACATGCTAGCCCCTGGTGCGGGCGGTTACCTTGAACACCATCG
1 GGTTGCATCGAACACCATCGACACATGCTGGCCCCTGGTGCGGGCGGTTGCCTTGAACACCATCG
* * * * *
2837019 ACACATGCTGGGCCT-TAGTACGGAC
66 ATAGAAGAT-GGCCTCTAGTACGGGC
* * * * * * * * * * ** * *
2837044 GGTTACCTCGACCATCATCGATAGAAGATGGCCCTTGGTGTGGGCTCTTGCCTCGACCACCATC-
1 GGTTGCATCGAACACCATCGACACATGCTGGCCCCTGGTGCGGGCGGTTGCCTTGAACACCATCG
* ** *
2837108 AGTAGAAGATGGCCTCTAGTGCATGT
66 A-TAGAAGATGGCCTCTAGTACGGGC
* *
2837134 GGTTGCATCAAACACCATCGACACATGCTGGCCCCTAGTGCGGGCGGTTGCCTTGAACACCATC
1 GGTTGCATCGAACACCATCGACACATGCTGGCCCCTGGTGCGGGCGGTTGCCTTGAACACCATC
2837198 AGCACGTGCT
Statistics
Matches: 180, Mismatches: 61, Indels: 6
0.73 0.25 0.02
Matches are distributed among these distances:
89 6 0.03
90 169 0.94
91 5 0.03
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (90 bp):
GGTTGCATCGAACACCATCGACACATGCTGGCCCCTGGTGCGGGCGGTTGCCTTGAACACCATCG
ATAGAAGATGGCCTCTAGTACGGGC
Found at i:2837197 original size:180 final size:180
Alignment explanation
Indices: 2836876--2837263 Score: 512
Period size: 180 Copynumber: 2.2 Consensus size: 180
2836866 TTGCCTCGAG
* * * *
2836876 CACCATCGGCACAAGCTGACCCTTGGTGTAGGCTCTTGCCTCGACCACCATCGATAGAAGATGGC
1 CACCATCGACAGAAGATGGCCCTTGGTGTAGGCTCTTGCCTCGACCACCATCGATAGAAGATGGC
* * * * *
2836941 CTCTGGTACGGGCGGTTGCATCGAACACCATCGGCACATGCTAGCCCCTGGTGCGGGCGGTTACC
66 CTCTAGTACAGGCGGTTGCATCAAACACCATCGACACATGCTAGCCCCTAGTGCGGGCGGTTACC
* *
2837006 TTGAACACCATC-GACACATGCTGGGCCTTAGTAC-GGACGGTTACCTCGAC
131 TTGAACACCATCAG-CACATGCTGGGCCTTAGTACAAG-CGGTTACCTCAAC
* * *
2837056 CATCATCGATAGAAGATGGCCCTTGGTGTGGGCTCTTGCCTCGACCACCATC-AGTAGAAGATGG
1 CACCATCGACAGAAGATGGCCCTTGGTGTAGGCTCTTGCCTCGACCACCATCGA-TAGAAGATGG
* * * * *
2837120 CCTCTAGTGCATGTGGTTGCATCAAACACCATCGACACATGCTGGCCCCTAGTGCGGGCGGTTGC
65 CCTCTAGTACAGGCGGTTGCATCAAACACCATCGACACATGCTAGCCCCTAGTGCGGGCGGTTAC
* * * * *
2837185 CTTGAACACCATCAGCACGTGCTGGGCCTTGGTGCAAGTGGTTGCCTCAAC
130 CTTGAACACCATCAGCACATGCTGGGCCTTAGTACAAGCGGTTACCTCAAC
2837236 CACCATCGACAGAAGATGGCCCTTGGTG
1 CACCATCGACAGAAGATGGCCCTTGGTG
2837264 CAGACAGTTA
Statistics
Matches: 179, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
179 1 0.01
180 176 0.98
181 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.22
Consensus pattern (180 bp):
CACCATCGACAGAAGATGGCCCTTGGTGTAGGCTCTTGCCTCGACCACCATCGATAGAAGATGGC
CTCTAGTACAGGCGGTTGCATCAAACACCATCGACACATGCTAGCCCCTAGTGCGGGCGGTTACC
TTGAACACCATCAGCACATGCTGGGCCTTAGTACAAGCGGTTACCTCAAC
Found at i:2837406 original size:45 final size:45
Alignment explanation
Indices: 2837357--2837480 Score: 158
Period size: 45 Copynumber: 2.8 Consensus size: 45
2837347 TTTGGTACGG
*
2837357 GCGATTGCGTCGACCACCATCGGTAGAAGATGGCCCTTAGTGCAA
1 GCGATTGCCTCGACCACCATCGGTAGAAGATGGCCCTTAGTGCAA
* * * * * * *
2837402 GCGATTGCCTCGATCACCATTGGCACAAGCTGGCCCTTGGTGCAG
1 GCGATTGCCTCGACCACCATCGGTAGAAGATGGCCCTTAGTGCAA
**
2837447 GCTCTTGCCTCGACCACCATCGGTAGAAGATGGC
1 GCGATTGCCTCGACCACCATCGGTAGAAGATGGC
2837481 AGTTGCGTCG
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (45 bp):
GCGATTGCCTCGACCACCATCGGTAGAAGATGGCCCTTAGTGCAA
Found at i:2837410 original size:90 final size:90
Alignment explanation
Indices: 2836866--2837480 Score: 256
Period size: 90 Copynumber: 6.8 Consensus size: 90
2836856 GTGTGGATGG
* * ** ** *
2836866 TTGCCTCGAGCACCATCGGCACAAGCTGACCCTTGGTGTAGGCTCTTGCCTCGACCACCATCGAT
1 TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTACAGGCGATTGCCTCGACCACCATCGGT
* * ** *
2836931 AGAAGATGG-CCTCTGGTACGGGCGG
66 AGAAGATGGCCCT-TAGTGCAAGCGA
* * * * * * * * * * **
2836956 TTGCATCGAACACCATCGGCACATGCTAGCCCCTGGTGCGGGCGGTTACCTTGAACACCATCGAC
1 TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTACAGGCGATTGCCTCGACCACCATCGGT
* * * * * * *
2837021 ACATGCTGGGCCTTAGTAC-GGACGG
66 AGAAGATGGCCCTTAGTGCAAG-CGA
* * * ** * * *** ** *
2837046 TTACCTCGACCATCATCGATAGAAGATGGCCCTTGGTGTGGGCTCTTGCCTCGACCACCATCAGT
1 TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTACAGGCGATTGCCTCGACCACCATCGGT
* * *
2837111 AGAAGATGG-CCTCTAGTGCATGTGG
66 AGAAGATGGCCCT-TAGTGCAAGCGA
* * * * * * * * * * * * *
2837136 TTGCATCAAACACCATCGACACATGCTGGCCCCTAGTGCGGGCGGTTGCCTTGAACACCATCAGC
1 TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTACAGGCGATTGCCTCGACCACCATCGGT
* * * * * *
2837201 ACG-TGCTGGGCCTTGGTGCAAGTGG
66 A-GAAGATGGCCCTTAGTGCAAGCGA
* * * * * * * *
2837226 TTGCCTC-AACCACCATCGACAGAAGATGGCCCTTGGTGCAGAC-AGTTACCTCAAGCACCATCG
1 TTGCCTCGAA-CACCATCGGCACAAGCTGGCCCTTGGTACAGGCGA-TTGCCTCGACCACCATCG
** * * * * * *
2837289 ACACAA-ATTGGTCTTTGGTGC-CGACGG
64 GTAGAAGA-TGGCCCTTAGTGCAAG-CGA
*** * * * *
2837316 TTGCCTCGAACACCATCGGCATGTGCTGGGCTTTGGTACGGGCGATTGCGTCGACCACCATCGGT
1 TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTACAGGCGATTGCCTCGACCACCATCGGT
2837381 AGAAGATGGCCCTTAGTGCAAGCGA
66 AGAAGATGGCCCTTAGTGCAAGCGA
* * * **
2837406 TTGCCTCGATCACCATTGGCACAAGCTGGCCCTTGGTGCAGGCTCTTGCCTCGACCACCATCGGT
1 TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTACAGGCGATTGCCTCGACCACCATCGGT
2837471 AGAAGATGGC
66 AGAAGATGGC
2837481 AGTTGCGTCG
Statistics
Matches: 389, Mismatches: 121, Indels: 30
0.72 0.22 0.06
Matches are distributed among these distances:
89 8 0.02
90 368 0.95
91 13 0.03
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.22
Consensus pattern (90 bp):
TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTACAGGCGATTGCCTCGACCACCATCGGT
AGAAGATGGCCCTTAGTGCAAGCGA
Found at i:2837442 original size:135 final size:135
Alignment explanation
Indices: 2837091--2837469 Score: 368
Period size: 135 Copynumber: 2.8 Consensus size: 135
2837081 GTGTGGGCTC
* * * * *
2837091 TTGCCTCGACCACCATCAGTAGAAGATGG-CCTCTAGTGCATGTGGTTGCATCAAACACCATCGA
1 TTGCCTCGACCACCATCGGTAGAAGATGGCCCT-TAGTGCAAGCGATTGCCTCAAACACCATCGA
* * * * * * *
2837155 CACATGCTGGCCCCTAGTGCGGGCGGTTGCCTTGAACACCATCAGCACGTGCTGGGCCTTGGTGC
65 CACAAGCTGGCCCTTGGTGCAGGCGGTTGCCTCGAACACCATCGGCACGTGCTGGGCCTTGGTAC
* *
2837220 AAGTGG
130 AAGCGA
* ** * * *
2837226 TTGCCTCAACCACCATCGACAGAAGATGGCCCTTGGTGC-AGAC-AGTTACCTCAAGCACCATCG
1 TTGCCTCGACCACCATCGGTAGAAGATGGCCCTTAGTGCAAG-CGA-TTGCCTCAAACACCATCG
** * * * * * *
2837289 ACACAAATTGGTCTTTGGTGCCGACGGTTGCCTCGAACACCATCGGCATGTGCTGGGCTTTGGTA
64 ACACAAGCTGGCCCTTGGTGCAGGCGGTTGCCTCGAACACCATCGGCACGTGCTGGGCCTTGGTA
**
2837354 CGGGCGA
129 CAAGCGA
* * * * *
2837361 TTGCGTCGACCACCATCGGTAGAAGATGGCCCTTAGTGCAAGCGATTGCCTCGATCACCATTGGC
1 TTGCCTCGACCACCATCGGTAGAAGATGGCCCTTAGTGCAAGCGATTGCCTCAAACACCATCGAC
** *
2837426 ACAAGCTGGCCCTTGGTGCAGGCTCTTGCCTCGACCACCATCGG
66 ACAAGCTGGCCCTTGGTGCAGGCGGTTGCCTCGAACACCATCGG
2837470 TAGAAGATGG
Statistics
Matches: 191, Mismatches: 48, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
134 1 0.01
135 184 0.96
136 6 0.03
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (135 bp):
TTGCCTCGACCACCATCGGTAGAAGATGGCCCTTAGTGCAAGCGATTGCCTCAAACACCATCGAC
ACAAGCTGGCCCTTGGTGCAGGCGGTTGCCTCGAACACCATCGGCACGTGCTGGGCCTTGGTACA
AGCGA
Found at i:2845740 original size:172 final size:170
Alignment explanation
Indices: 2845297--2845902 Score: 431
Period size: 171 Copynumber: 3.5 Consensus size: 170
2845287 ACTCCATATG
* * ** **** *
2845297 CTTAGACTAGGAATGAACTCTGTATGCGTAAGTCAACCCACAAAATGAGCGTGCGGGCGTTGAGC
1 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGATAGTGCGGGCACCCAAC
* * * * ** ** ** *
2845362 CGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTGTGTGCTATCGATCT
66 CGGCCAAAGAGGCAGAATGCGCAAGCCAGAGATCGACCCAACCCCCCTCTGCATGCCGTCAATCT
* ** * * * * **
2845427 CGC-TGTCGATCCTGCTGCCACAACCCCCGGTCC-GACTGGGG
131 CGCATG--GTTCCTGCTGCTGCAACCCTCAGTCCGGTC-CGAT
* * ** * ** * *
2845468 CTTAGAC-ATGGAATGAACTCTGCATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGATAGTGCGGGCACCCAA
* * * * * * **
2845532 TCAGTCAGAGAGGTAGAATGCGCAAGCCAGAGATCGACCCAATCCCCCT-TGTGTGCCGTCAATC
65 CCGGCCAAAGAGGCAGAATGCGCAAGCCAGAGATCGACCCAACCCCCCTCTGCATGCCGTCAAT-
*
2845596 CTACTGC-TGG-TCTTGCTG-TCGCAACCCTCAGTCCGGTCCGTAT
129 CT-C-GCATGGTTCCTGCTGCT-GCAACCCTCAGTCCGGTCCG-AT
* * * *
2845639 GCTTGGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATAGTGCGGGCACCCAA
1 -CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGATAGTGCGGGCACCCAA
* * * * * *
2845704 CCGGCCATAGAGGCAGAATGTGCAAGTC-GAAGATCGACTCGACCCCCCTCTGCATGCTGTCAAT
65 CCGGCCAAAGAGGCAGAATGCGCAAGCCAG-AGATCGACCCAACCCCCCTCTGCATGCCGTCAAT
* *
2845768 CTCGCTATGGTTCCTGCTGCTGCAACCCTCAGTTCGGTCTGAT
129 CTCGC-ATGGTTCCTGCTGCTGCAACCCTCAGTCCGGTCCGAT
* * * * *
2845811 CTTAGACTAGAAATGAACTCTGTATGCCTAAGTCAACCTACAAAATGAGTAG-GCGGACA-CTAC
1 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGA-TAGTGCGGGCACCCA-
*
2845874 ACCGGCCAAAGAGGCAGGATGCGCAAGCC
64 ACCGGCCAAAGAGGCAGAATGCGCAAGCC
2845903 GTGGATCGAT
Statistics
Matches: 348, Mismatches: 70, Indels: 34
0.77 0.15 0.08
Matches are distributed among these distances:
170 35 0.10
171 174 0.50
172 98 0.28
173 40 0.11
174 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (170 bp):
CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGATAGTGCGGGCACCCAAC
CGGCCAAAGAGGCAGAATGCGCAAGCCAGAGATCGACCCAACCCCCCTCTGCATGCCGTCAATCT
CGCATGGTTCCTGCTGCTGCAACCCTCAGTCCGGTCCGAT
Found at i:2846433 original size:11 final size:11
Alignment explanation
Indices: 2846417--2846444 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
2846407 AGGTCAGGTT
2846417 CTCCGATGATG
1 CTCCGATGATG
2846428 CTCCGATGATG
1 CTCCGATGATG
2846439 CTCCGA
1 CTCCGA
2846445 CAATGCTTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.32, G:0.25, T:0.25
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:2846774 original size:45 final size:45
Alignment explanation
Indices: 2846593--2848056 Score: 277
Period size: 45 Copynumber: 32.3 Consensus size: 45
2846583 GGCACATGCA
* * ** *
2846593 TCGACCATCATCGGCAC-AG-CTGCCCTTTGGTATGGGCACTTGCC
1 TCGACCACCATCGGCACAAGTCGGCCC-TTGGTGCGGGCAGTTGCC
** * * * * * **
2846637 TCGACTGCCATCGACACAAGCTGGGACC-TAGTGTGGGTGGTTGCC
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAGTTGCC
* * * * **
2846682 TCGATCACCATCGGTACATGCCGGCCCTTGGTGTAGGCAGTTGCC
1 TCGACCACCATCGGCACAAGTCGGCCCTTGGTGCGGGCAGTTGCC
* ** *
2846727 TCGACCACCATCGGCACAAGTCAGCCCTTGGTGCGGGCTCTTACC
1 TCGACCACCATCGGCACAAGTCGGCCCTTGGTGCGGGCAGTTGCC
** * * * *
2846772 TCGACCATAATCGACAAAAGAT-GGCCCCTGGTGCGGGCGGTTGCC
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAGTTGCC
* * * * * **** *
2846817 TCCACCACCATCGGCATAAG-CTGACCTTTGGTACGAATGGTTACC
1 TCGACCACCATCGGCACAAGTC-GGCCCTTGGTGCGGGCAGTTGCC
* * * * * *
2846862 TCAACCACCATCGGCACAAGAT-GGCCCCTGGTGCGAGC-GACTACG
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAG-TTGCC
* * * * * * *
2846907 TCGAACACCATTGGCACATG-CTGGGCTTTGGTGCTGGCGGTTGCC
1 TCGACCACCATCGGCACAAGTC-GGCCCTTGGTGCGGGCAGTTGCC
* ** * * * * ** *
2846952 TCGACCACCGTCAACATATGCTAGG-CCTTGGTGTGGGGGGTTACC
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAGTTGCC
* * *** * * * *
2846997 TTGAACACCATCGGCATGTGGTAGG-CCTTGGTGCGGACGGTTGGC
1 TCGACCACCATCGGCA-CAAGTCGGCCCTTGGTGCGGGCAGTTGCC
* * * * **
2847042 TCGAGCACCATCGGCATAAGTCGGCCCTTGCTACGGGCTCTTGCC
1 TCGACCACCATCGGCACAAGTCGGCCCTTGGTGCGGGCAGTTGCC
* * * * *
2847087 TCGACCACCATTGGCAGAAAAT-GGCCAC-TGGTACGGGCCA-TTGCA
1 TCGACCACCATCGGCA-CAAGTCGGCC-CTTGGTGCGGG-CAGTTGCC
* * * * * * * *
2847132 TCAAACACCATCGACACATG-CTAGCCCCTGGTACGAGC-GATTGCC
1 TCGACCACCATCGGCACAAGTC-GGCCCTTGGTGCGGGCAG-TTGCC
* * ** * * *
2847177 TCAAACACCATCGGCACTTG-CTGGGCCTTGGTGTGGGCCGTTGCC
1 TCGACCACCATCGGCACAAGTC-GGCCCTTGGTGCGGGCAGTTGCC
* * * * *
2847222 TCGACCACCATCGGTAGAAGAT-GGCCCCTAGTGCGGGC-GATTTCC
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAG-TTGCC
* ** * * * * *
2847267 TCAACCAACCGCCTGGACCACCATCGGTAGAAAAT-GGCCAC-TGGTACGAGCGGTTACA
1 TCGACC-ACCATC-GG--CA-CA-----AG----TCGGCC-CTTGGTGCGGGCAGTTGCC
* * * * * * *
2847325 TCAAACACCATCAGCACATG-CTGG-CCTCTGGTACGAGCGGTTGCC
1 TCGACCACCATCGGCACAAGTC-GGCCCT-TGGTGCGGGCAGTTGCC
* * ** * *
2847370 TTGAACACCATCGGCACTTG-CTGGGCCTTGGTGCGGGCGGTTGCC
1 TCGACCACCATCGGCACAAGTC-GGCCCTTGGTGCGGGCAGTTGCC
* * * * *
2847415 TCGACCACCATCGGCAGAAGAT-GGCCCCTAGTGTGGGCGGTTGCC
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAGTTGCC
* * * * * **
2847460 TCGAGCACCATCGACACAAGTTGGCCCTTGCTGTGGGCTCTTGCC
1 TCGACCACCATCGGCACAAGTCGGCCCTTGGTGCGGGCAGTTGCC
** ** * * * * *
2847505 TCGACCATAATTAGTAGAAGAT-GGCCCCTGGTGCGGACGGTTGCC
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAGTTGCC
* * * * *
2847550 TTGACCACCATCGCCACTAG-CTGACCCTTGGTGCGGGCGGTTGCC
1 TCGACCACCATCGGCACAAGTC-GGCCCTTGGTGCGGGCAGTTGCC
** ** * * * *
2847595 TCGACCACCATCAACACAAGAT-GGCCCCCGATGTGGGCGGTTGCA
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAGTTGCC
* * * * * ** *
2847640 TCGAACACCATCGGTACATG-CTGGGCCTTGGTGCTGGTGGTTGTC
1 TCGACCACCATCGGCACAAGTC-GGCCCTTGGTGCGGGCAGTTGCC
* * * * * * * ** * *
2847685 TCAACCACTATCGGCACATGCTAGG-CCTTGATACGAGTGGCTACC
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAGTTGCC
* ** * ** *
2847730 TCGAACACCATCGGCACGTGCTAGG-CCTTGGTGCGATCGGTTGCC
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAGTTGCC
* * * * * * **
2847775 TTGAGCACCATCGACACAAGCCGACCCTTGGTGCAGGCTCTTGCC
1 TCGACCACCATCGGCACAAGTCGGCCCTTGGTGCGGGCAGTTGCC
* ** * * * * *
2847820 TTGACCACCATCTACAAAAGAT-GGCCCCTGGTGCGGGCGGTTACG
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAGTTGCC
* * * * * *
2847865 TCGAACACCATCGGCACATG-CTAGCCCCTGGTACGGG-TGATTGCC
1 TCGACCACCATCGGCACAAGTC-GGCCCTTGGTGCGGGCAG-TTGCC
* *
2847910 TCGAACACCATCGGCAC--GTCCTAGG-CCTTGGTGCGGGCAGTTACC
1 TCGACCACCATCGGCACAAGT-C--GGCCCTTGGTGCGGGCAGTTGCC
* * * *
2847955 TCGACCACCATCAGCAGAAGAT-GGCCCTTGGTACGGGCGGTTGCC
1 TCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGGCAGTTGCC
* * **
2848000 TTGACCACCATTGGCACAAG-CGGCCCTTGGTGCGGGCTCTTGCC
1 TCGACCACCATCGGCACAAGTCGGCCCTTGGTGCGGGCAGTTGCC
2848044 TCGACCACCATCG
1 TCGACCACCATCG
2848057 ATAGAAGATG
Statistics
Matches: 1025, Mismatches: 320, Indels: 150
0.69 0.21 0.10
Matches are distributed among these distances:
43 2 0.00
44 63 0.06
45 893 0.87
46 23 0.02
47 6 0.01
48 2 0.00
49 1 0.00
50 1 0.00
53 2 0.00
54 2 0.00
55 2 0.00
56 1 0.00
57 4 0.00
58 21 0.02
59 2 0.00
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.21
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGTCGGCCCTTGGTGCGGGCAGTTGCC
Found at i:2847418 original size:193 final size:193
Alignment explanation
Indices: 2847084--2847453 Score: 580
Period size: 193 Copynumber: 1.9 Consensus size: 193
2847074 ACGGGCTCTT
* * *
2847084 GCCTCGACCACCATTGGCAGAAAATGGCCACTGGTACGGGCCATTGCATCAAACACCATCGACAC
1 GCCTCGACCACCATCGGCAGAAAATGGCCACTGGTACGAGCCATTACATCAAACACCATCGACAC
*
2847149 ATGCTAGCCCCTGGTACGAGCGATTGCCTCAAACACCATCGGCACTTGCTGGGCCTTGGTGTGGG
66 ATGCTAGCCCCTGGTACGAGCGATTGCCTCAAACACCATCGGCACTTGCTGGGCCTTGGTGCGGG
*
2847214 CCGTTGCCTCGACCACCATCGGTAGAAGATGGCCCCTAGTGCGGGCGATTTCCTCAACCAACC
131 CCGTTGCCTCGACCACCATCGGCAGAAGATGGCCCCTAGTGCGGGCGATTTCCTCAACCAACC
* * **
2847277 GCCTGGACCACCATCGGTAGAAAATGGCCACTGGTACGAGCGGTTACATCAAACACCATC-AGCA
1 GCCTCGACCACCATCGGCAGAAAATGGCCACTGGTACGAGCCATTACATCAAACACCATCGA-CA
* * * **
2847341 CATGCTGGCCTCTGGTACGAGCGGTTGCCTTGAACACCATCGGCACTTGCTGGGCCTTGGTGCGG
65 CATGCTAGCCCCTGGTACGAGCGATTGCCTCAAACACCATCGGCACTTGCTGGGCCTTGGTGCGG
* *
2847406 GCGGTTGCCTCGACCACCATCGGCAGAAGATGGCCCCTAGTGTGGGCG
130 GCCGTTGCCTCGACCACCATCGGCAGAAGATGGCCCCTAGTGCGGGCG
2847454 GTTGCCTCGA
Statistics
Matches: 160, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
192 1 0.01
193 159 0.99
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (193 bp):
GCCTCGACCACCATCGGCAGAAAATGGCCACTGGTACGAGCCATTACATCAAACACCATCGACAC
ATGCTAGCCCCTGGTACGAGCGATTGCCTCAAACACCATCGGCACTTGCTGGGCCTTGGTGCGGG
CCGTTGCCTCGACCACCATCGGCAGAAGATGGCCCCTAGTGCGGGCGATTTCCTCAACCAACC
Found at i:2847457 original size:90 final size:90
Alignment explanation
Indices: 2847330--2848070 Score: 509
Period size: 90 Copynumber: 8.2 Consensus size: 90
2847320 TTACATCAAA
* * * * * * * ** *
2847330 CACCATCAGCACATGCTGGCCTCTGGTACGAGCGGTTGCCTTGAACACCATCGGCACTTGCTGGG
1 CACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGC
2847395 CCTTGGTGCGGGCGGTTGCCTCGAC
66 CCTTGGTGCGGGCGGTTGCCTCGAC
* * * * * *
2847420 CACCATCGGCAGAAGATGGCCCCTAGTGTGGGCGGTTGCCTCGAGCACCATCGACACAAGTTGGC
1 CACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGC
* * **
2847485 CCTTGCTGTGGGCTCTTGCCTCGAC
66 CCTTGGTGCGGGCGGTTGCCTCGAC
** ** * * * * * * * *
2847510 CATAATTAGTAGAAGATGGCCCCTGGTGCGGACGGTTGCCTTGACCACCATCGCCACTAGCTGAC
1 CACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGC
2847575 CCTTGGTGCGGGCGGTTGCCTCGAC
66 CCTTGGTGCGGGCGGTTGCCTCGAC
** * * * * * * *
2847600 CACCATCAACACAAGATGGCCCCCGATGTGGGCGGTTGCATCGAACACCATCGGTACATGCTGGG
1 CACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGC
* * * *
2847665 CCTTGGTGCTGGTGGTTGTCTCAAC
66 CCTTGGTGCGGGCGGTTGCCTCGAC
* * * * * * * * * * **
2847690 CACTATCGGCACATGCTAGG-CCTTGATACGAGTGGCTACCTCGAACACCATCGGCACGTGCTAG
1 CACCATCGGCACAAGAT-GGCCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCT-G
** * *
2847754 G-CCTTGGTGCGATCGGTTGCCTTGAG
64 GCCCTTGGTGCGGGCGGTTGCCTCGAC
* ** * * * ** * * ** * *
2847780 CACCATCGACACAAGCCGACCCTTGGTGCAGGCTCTTGCCTTGACCACCATCTACAAAAGATGGC
1 CACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGC
* * * *
2847845 CCCTGGTGCGGGCGGTTACGTCGAA
66 CCTTGGTGCGGGCGGTTGCCTCGAC
* * * * * * ***
2847870 CACCATCGGCACATGCTAGCCCCTGGTACGGGTGATTGCCTCGAACACCATCGGCACGTCCTAGG
1 CACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCT-GG
* *
2847935 -CCTTGGTGCGGGCAGTTACCTCGAC
65 CCCTTGGTGCGGGCGGTTGCCTCGAC
* * * * * * *
2847960 CACCATCAGCAGAAGATGGCCCTTGGTACGGGCGGTTGCCTTGACCACCATTGGCACAAGC-GGC
1 CACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGC
**
2848024 CCTTGGTGCGGGCTCTTGCCTCGAC
66 CCTTGGTGCGGGCGGTTGCCTCGAC
** *
2848049 CACCATCGATAGAAGATGGCCC
1 CACCATCGGCACAAGATGGCCC
2848071 TTAGTTTGAG
Statistics
Matches: 487, Mismatches: 158, Indels: 13
0.74 0.24 0.02
Matches are distributed among these distances:
88 2 0.00
89 44 0.09
90 435 0.89
91 6 0.01
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.21
Consensus pattern (90 bp):
CACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGC
CCTTGGTGCGGGCGGTTGCCTCGAC
Found at i:2847682 original size:135 final size:134
Alignment explanation
Indices: 2847361--2847702 Score: 333
Period size: 135 Copynumber: 2.5 Consensus size: 134
2847351 TCTGGTACGA
* * *
2847361 GCGGTTGCCTTGAACACCATCGGCACTTGCTGGGCCTTGGTGCGGGCGGTTGCCTCGACCACCAT
1 GCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTGGTGC-GGCGGTTGCCTCGACCACCAT
* * * * * * * ** *
2847426 CGGCAGAAGATGGCCCCTAGTGTGGGCGGTTGCCTCGAGCACCATCGACACAAGTTGGCCCTTGC
65 CGCCACAAGATGACCCCTAGTGCGGGCGGTTGCCTCGACCACCATCAACACAAGATGGCCCCCGA
2847491 TGTGG
130 TGTGG
** * ** ** * * * * * *
2847496 GCTCTTGCCTCGACCATAATTAGTAGAAGATGGCCCCTGGTGCGGACGGTTGCCTTGACCACCAT
1 GCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTGGTGCGG-CGGTTGCCTCGACCACCAT
* * * *
2847561 CGCCACTAGCTGACCCTTGGTGCGGGCGGTTGCCTCGACCACCATCAACACAAGATGGCCCCCGA
65 CGCCACAAGATGACCCCTAGTGCGGGCGGTTGCCTCGACCACCATCAACACAAGATGGCCCCCGA
2847626 TGTGG
130 TGTGG
* * * * *
2847631 GCGGTTGCATCGAACACCATCGGTACATGCTGGGCCTTGGTGCTGGTGGTTGTCTCAACCACTAT
1 GCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTGGTGC-GGCGGTTGCCTCGACCACCAT
*
2847696 CGGCACA
65 CGCCACA
2847703 TGCTAGGCCT
Statistics
Matches: 155, Mismatches: 50, Indels: 4
0.74 0.24 0.02
Matches are distributed among these distances:
134 2 0.01
135 151 0.97
136 2 0.01
ACGTcount: A:0.17, C:0.31, G:0.30, T:0.22
Consensus pattern (134 bp):
GCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTGGTGCGGCGGTTGCCTCGACCACCATC
GCCACAAGATGACCCCTAGTGCGGGCGGTTGCCTCGACCACCATCAACACAAGATGGCCCCCGAT
GTGG
Found at i:2848894 original size:13 final size:13
Alignment explanation
Indices: 2848876--2848923 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
2848866 CAATGGCACA
2848876 TGATGGCACATGG
1 TGATGGCACATGG
2848889 TGATGGCACA---
1 TGATGGCACATGG
* *
2848899 AGATGGCGCATGG
1 TGATGGCACATGG
2848912 TGATGGCACATG
1 TGATGGCACATG
2848924 CATCGACCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
10 8 0.29
13 20 0.71
ACGTcount: A:0.25, C:0.17, G:0.38, T:0.21
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:2848898 original size:23 final size:23
Alignment explanation
Indices: 2848868--2848923 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
2848858 TCGACCATCA
2848868 ATGGCACATGATGGCACATGGTG
1 ATGGCACATGATGGCACATGGTG
* *
2848891 ATGGCACAAGATGGCGCATGGTG
1 ATGGCACATGATGGCACATGGTG
2848914 ATGGCACATG
1 ATGGCACATG
2848924 CATCGACCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.27, C:0.18, G:0.36, T:0.20
Consensus pattern (23 bp):
ATGGCACATGATGGCACATGGTG
Found at i:2849004 original size:45 final size:45
Alignment explanation
Indices: 2848926--2849362 Score: 191
Period size: 45 Copynumber: 9.7 Consensus size: 45
2848916 GGCACATGCA
* * * * **
2848926 TCGACCAACATCGGCAC-AGGCTACCCTTCGGTACAGGCACTTGCC
1 TCGACCACCATCGACACAAGCCGACCCTT-GGTACAGGCGGTTGCC
* * *
2848971 TCGACCGCCATCGACACAAGCTGAGCCC-TGGTACAGGTGGTTGCC
1 TCGACCACCATCGACACAAGCCGA-CCCTTGGTACAGGCGGTTGCC
* * * * *
2849016 TTGATCACCATCGACATATGCCGACCCTTGGTACGGGCGGTTGCC
1 TCGACCACCATCGACACAAGCCGACCCTTGGTACAGGCGGTTGCC
* * * * *
2849061 TCGACCACCATCGATACAAGTCGGCCCTTGGTGCTGGCGGTTGCC
1 TCGACCACCATCGACACAAGCCGACCCTTGGTACAGGCGGTTGCC
** ** * * **** * *
2849106 TCGACCACCATCGGTACAAGATGGCCCCTGGGGTGGGCAGTTGCA
1 TCGACCACCATCGACACAAGCCGACCCTTGGTACAGGCGGTTGCC
* * * * * ** * *
2849151 TCGAACACCATTGGCACATGCTGGGCCATGGTGCAGGCGGTTGCC
1 TCGACCACCATCGACACAAGCCGACCCTTGGTACAGGCGGTTGCC
* * * * * ***
2849196 TCGACCACCATCAACACATGCTGAGCCTTGGTGCAGTTAGTTGCC
1 TCGACCACCATCGACACAAGCCGACCCTTGGTACAGGCGGTTGCC
* * * * ** * * * *
2849241 TTGAACACTAT-TAGCACGTGCCGAGCCTTGGTACAAGCTGTTACC
1 TCGACCACCATCGA-CACAAGCCGACCCTTGGTACAGGCGGTTGCC
* * * * * *
2849286 CCGAGCACCATCGACACCAGTC-AGCCCTTGGTGCGGGCGGTTGCC
1 TCGACCACCATCGACACAAGCCGA-CCCTTGGTACAGGCGGTTGCC
* * *
2849331 TCGAACACCATC-AGCACAAGCCAACCTTTGGT
1 TCGACCACCATCGA-CACAAGCCGACCCTTGGT
2849363 GCGGGCTCTT
Statistics
Matches: 297, Mismatches: 87, Indels: 16
0.74 0.22 0.04
Matches are distributed among these distances:
44 6 0.02
45 282 0.95
46 6 0.02
47 3 0.01
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.21
Consensus pattern (45 bp):
TCGACCACCATCGACACAAGCCGACCCTTGGTACAGGCGGTTGCC
Found at i:2849103 original size:90 final size:91
Alignment explanation
Indices: 2848948--2849118 Score: 213
Period size: 90 Copynumber: 1.9 Consensus size: 91
2848938 GGCACAGGCT
* *
2848948 ACCCTTCGGTACAGGCACTTGCCTCGACCGCCATCGACACAAGCTGAGCCCTGGTACAGGTGGTT
1 ACCCTTCGGTACAGGCACTTGCCTCGACCACCATCGACACAAGCTGAGCCCTGGTACAGGCGGTT
* *
2849013 GCCTTGATCACCATCGACATATGCCG
66 GCCTCGACCACCATCGACATATGCCG
* ** * * *
2849039 ACCCTT-GGTACGGGCGGTTGCCTCGACCACCATCGATACAAG-TCG-GCCCTTGGTGCTGGCGG
1 ACCCTTCGGTACAGGCACTTGCCTCGACCACCATCGACACAAGCT-GAGCCC-TGGTACAGGCGG
2849101 TTGCCTCGACCACCATCG
64 TTGCCTCGACCACCATCG
2849119 GTACAAGATG
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
89 5 0.07
90 57 0.84
91 6 0.09
ACGTcount: A:0.18, C:0.35, G:0.26, T:0.21
Consensus pattern (91 bp):
ACCCTTCGGTACAGGCACTTGCCTCGACCACCATCGACACAAGCTGAGCCCTGGTACAGGCGGTT
GCCTCGACCACCATCGACATATGCCG
Found at i:2849655 original size:45 final size:45
Alignment explanation
Indices: 2849606--2851594 Score: 381
Period size: 45 Copynumber: 44.2 Consensus size: 45
2849596 TTGCGTCTAT
* * *
2849606 CACCATCGACACATGCAAGGCTTTGGTACGGGCGGTTGCCTCGAC
1 CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * * *
2849651 CACCATCGATAAAAG-ATGGCCCTGGTGCGGGTGGTTGCCTTGAA
1 CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * ** * *
2849695 CACCATCGGCACGTGCCGGGCCTTGGTGCGGGCAGTTGCCTCGAG
1 CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * *
2849740 CACCATCAACAC-TAGCATGCCCTTGGTGCGAGCAGTTGCCTTGAA
1 CACCATCGACACAT-GCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * * * *
2849785 CACTATCGACACAAG-ATGGCCCCTGGGGTGGGCGATTGCATCGAA
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * * *** *
2849830 CACCATTGGCACATGC-TGGATCGTGGTGTGAATGGTTGCCTCGAC
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * * *
2849875 CACCATTGGCACATGTCGA-GCTTTGGTACAGGCGGTTACCTCGAA
1 CACCATCGACACATG-CAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * *
2849920 CACTATC-AGCACGTGTC-AGGCCTTGGTACGGGCCGTTGCC-CTGAG
1 CACCATCGA-CACATG-CAAGGCCTTGGTGCGGGCGGTTGCCTC-GAA
* ** *
2849965 CACCATCGACACCA-GC-AGGCCCTTGGTACTAGCAGTTGCCTCGAA
1 CACCATCGACA-CATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* * ** * * ** * *
2850010 CACCATCGACATAAGCCTGCCCTTGGTGCGAGCTCTTGCCTCCAC
1 CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
** ** * * * ** *
2850055 CATAATCGGTAGAAG-ATGGCCCCGGGTGCGGGTGGTTGCCTC-AA
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* *
2850099 CCACCATCGACACATGC-CGAGCCTTGGTGCGGGCGGTTACCTCGAA
1 -CACCATCGACACATGCAAG-GCCTTGGTGCGGGCGGTTGCCTCGAA
* * * ** *
2850145 CACCATCGGCACATGTCGA-GCCTTGGTGTGGGCCATTAG-CTCGAG
1 CACCATCGACACATG-CAAGGCCTTGGTGCGGGCGGTT-GCCTCGAA
* * *
2850190 CACCATCGACACCA-GCCA-GCCTTTGGTACGGGCGCTTGCCTC-AA
1 CACCATCGACA-CATGCAAGGCC-TTGGTGCGGGCGGTTGCCTCGAA
* ** * * ** *
2850234 CCACCATCGACACA-ACTTGGCCCCTGGTGCAGGCGGTTGTGTCTAA
1 -CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* ** * *
2850280 CACCATCGACACATGCAGGGCCTT-GTGCGGGCAATTACCTCGAC
1 CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * * *
2850324 CACCATCGGCAGAAG-ATGGCCCCTGGTGAGGGCGGTTGCCTTGAA
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* ** * *
2850369 CACCATCGACACGTGCCAA-GCCTTGGTGCGGATGGTTACCTCGAG
1 CACCATCGACACATG-CAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * ** * * **
2850414 CACTATCGACACAAG-ATGGCCCCTGGTATGAGCGGTTGCGTCTTA
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
** * ** * *
2850459 CACCATCGGTACATACTGGGCCTTGGTGCGAGCGGTTGCCTCGAG
1 CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * ** * * *
2850504 CATCATCGGCA-TTAGTC--GGCCCTTGGTGTTGGTGGTTACCTCGAC
1 CACCATCGACACAT-G-CAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* * * ** * ** * *
2850549 CACCATCGACACAAG-ATGGCCCCTGGTATGAGCGGTTGTGTTGAC
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
** * ** * *
2850594 CACCATCGGTACATACTGGGCCTTGGTGCGGGTGGTTGCCTCGAC
1 CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * * * *
2850639 CACCATTGGCAAAAG-ATGGCCCCTGGTGTGGGCGGTTGCCTCGAG
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
** * * * * ** * *
2850684 CACCATTAACACAAGTCGA-CCCTTGGTGCGAGCTCTTGCTTCGAC
1 CACCATCGACACATG-CAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
** * * * * * * * * * *
2850729 CATAATCGGCAGAAG-ATGACCCCTGGTGCAGGCGGTTACCTCCAC
1 CACCATCGACACATGCAAG-GCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * *
2850774 CACCATCGACACAAGCCAA-CCCTTGGTGTGGACGGTTGCCTCGAC
1 CACCATCGACACATG-CAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * * * * * *
2850819 CACCATCGGCATAAG-ATGGCCCCTAGTGTGGGCGGTTACGTTGAA
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
** * * *
2850864 CACCATCGACACATGCTGGGCCTTGGTGCTGGTGGTTGCCTCGAC
1 CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* ** * * ** * *
2850909 CACCACCGGTACGTGCTAGGCCTTGGTATGGGTGGTTGCCTCGAG
1 CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * ** *
2850954 CACCA-CCAGCACAAG-TTGGCCCTTGGTGCAGGGTC--TTGCCTCGAC
1 CACCATCGA-CACATGCAAGG-CCTTGGTGC-GGG-CGGTTGCCTCGAA
* * * * * * *
2850999 CACCATCGACAGAAG-ATAGCCCTTGGTACGGGCAGTTGCGTCAAA
1 CACCATCGACACATGCA-AGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * * *
2851044 CACCATCAACATATGC-TGGCCCCTT-ATACGAGTGGTTGCCTCGAA
1 CACCATCGACACATGCAAGG--CCTTGGTGCGGGCGGTTGCCTCGAA
* * ** **
2851089 CACCATCGGCACGTGCTGGGCCTTGGCACGGGCGGTTGCCTCGAA
1 CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * * * * *
2851134 CACTATC-AGCAGAAG-ATGGCCCTTGGTGCGAGCGATTACCTTGAG
1 CACCATCGA-CACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * * ** *
2851179 CACCATCGGCATAAGC-TGGCCCTTAGTGCAGGCTCTTGCCTCGAC
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
** * * * * **
2851224 CACCATCGGTAGAAG-ATGGCCCTTGGTGCGAGCGGTTGTATCGAA
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* ** * * *
2851269 CACCATCGGCACATG-TTGGCCCCTGGTGTGGACGGTTGCCTCGAA
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* ** * * *
2851314 CACCATCAACACATGCTGGGCCTTGGTGCGGGTGATTGCCTCGAC
1 CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * **
2851359 CACCATCGATAGAAG-ATGGCCCTTGGTGCGGGCATTTGCCTC-AA
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* * * * **
2851403 GCACCATCGGCACAAGC-TGGCCCTTGGTGTGGATGGTTGCCTCGAA
1 -CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* ** ** * * * *
2851449 CACCGTCGGTA-AGTGCTGGGCCTTGGTGAGGGTGGTTACCTCGAC
1 CACCATCGACACA-TGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
* * * * * * *
2851494 CACCATTGACAGAAG-ATGGCCCTTAGTGTGGGCGGTTGCCTCGAC
1 CACCATCGACACATGCAAGG-CCTTGGTGCGGGCGGTTGCCTCGAA
* * * * ** *
2851539 CACCATCGGCACAAGC-CGACCCTCT-GTGCGGGCTCTTGCCTCGAC
1 CACCATCGACACATGCAAG-GCCT-TGGTGCGGGCGGTTGCCTCGAA
2851584 CACCATCGACA
1 CACCATCGACA
2851595 GAAGATGGCC
Statistics
Matches: 1393, Mismatches: 465, Indels: 172
0.69 0.23 0.08
Matches are distributed among these distances:
43 6 0.00
44 109 0.08
45 1228 0.88
46 48 0.03
47 2 0.00
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (45 bp):
CACCATCGACACATGCAAGGCCTTGGTGCGGGCGGTTGCCTCGAA
Found at i:2849762 original size:89 final size:90
Alignment explanation
Indices: 2849549--2849792 Score: 233
Period size: 89 Copynumber: 2.7 Consensus size: 90
2849539 TGGTGTGAAT
* * * * * * * *
2849549 AGTTGCCTCGACCACCATCGACACAAGATGGCCCCTAGTACGAGCAATTGCGTCT-ATCACCATC
1 AGTTGCCTCGACCACCATCAACAAAAGATGGCCCTTGGTGCGAGCAGTTGCCT-TGAACACCATC
* * ** *
2849613 GACACATGCAAGGCTTTGGTACGGGC
65 GGCACGTGCCGGGCCTTGGTACGGGC
* * * * **
2849639 GGTTGCCTCGACCACCATCGATAAAAGATGGCCC-TGGTGCGGGTGGTTGCCTTGAACACCATCG
1 AGTTGCCTCGACCACCATCAACAAAAGATGGCCCTTGGTGCGAGCAGTTGCCTTGAACACCATCG
*
2849703 GCACGTGCCGGGCCTTGGTGCGGGC
66 GCACGTGCCGGGCCTTGGTACGGGC
* ** *
2849728 AGTTGCCTCGAGCACCATCAACACTAGCAT-GCCCTTGGTGCGAGCAGTTGCCTTGAACACTATC
1 AGTTGCCTCGACCACCATCAACAAAAG-ATGGCCCTTGGTGCGAGCAGTTGCCTTGAACACCATC
2849792 G
65 G
2849793 ACACAAGATG
Statistics
Matches: 124, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
88 1 0.01
89 64 0.52
90 59 0.48
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.21
Consensus pattern (90 bp):
AGTTGCCTCGACCACCATCAACAAAAGATGGCCCTTGGTGCGAGCAGTTGCCTTGAACACCATCG
GCACGTGCCGGGCCTTGGTACGGGC
Found at i:2850413 original size:674 final size:674
Alignment explanation
Indices: 2848950--2850428 Score: 1681
Period size: 674 Copynumber: 2.2 Consensus size: 674
2848940 CACAGGCTAC
* * * * * * * *
2848950 CCTTCGGTACAGGCACTTGCCTCGACCGCCATCGACACAAGCTGAGCCCTGGT-ACAGGTGGTTG
1 CCTT-GGTACGGGCAATTACCTCGACCACCATCGACAAAAGATG-GCCCTGGTGA-GGGCGGTTG
* ** * * * *
2849014 CCTTGATCACCATCGACATATGCCGACCCTTGGTACGGGCGGTTGCCTCGACCACCATCGATACA
63 CCTTGAACACCATCGACACGTGCCGAGCCTTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACA
* * **
2849079 AGTCGGCCCTTGGTGCTGGCGGTTGCCTCGACCACCATCGGTACAAGATGGCCCCTGGGGTGGGC
128 AGTCGGCCCTTGGTGCTGGCAGTTGCCTCGAACACCATCGACACAAGATGGCCCCTGGGGTGGGC
* *
2849144 AGTTGCATCGAACACCATTGGCACATGCTGGGCCATGGTGCAGGCGGTTGCCTCGACCACCATCA
193 AGTTGCATCGAACACCATTGGCACATGCTGGACCATGGTGCAGACGGTTGCCTCGACCACCATCA
* ** * * * *
2849209 ACACATGCTGAGCCTTGGTGCAGTTAGTTGCCTTGAACACTATTAGCACGTGCCGAGCCTTGGTA
258 ACACATGCTGAGCCTTGGTACAGGCAGTTACCTCGAACACTATCAGCACGTGCAGAGCCTTGGTA
* * * *
2849274 CAAGCTGTTACCCCGAGCACCATCGACACCAGTCAGCCCTTGGTGCGGGCGGTTGCCTCGAACAC
323 CAAGCCGTTACCCCGAGCACCATCGACACCAGTCAGCCCTTGGTACGAGCAGTTGCCTCGAACAC
* * *
2849339 CATCAGCACAAGCCAACCTTTGGTGCGGGCTCTTGCCTCAACCACAATCTGTAGAAGATGGCCCC
388 CATCAGCACAAGCCAACCCTTGGTGCGAGCTCTTGCCTCAACCACAATCGGTAGAAGATGGCCCC
* * *
2849404 GGGTGTGGGCAGTTACCTCGACCACCATCGACACATGCCGAACCTTGGTGCGAACGGTTGCCTCA
453 GGGTGCGGGCAGTTACCTCAACCACCATCGACACATGCCGAACCTTGGTGCGAACGGTTACCTCA
* * ** * * **
2849469 AATATCATCGACATGTGTCAGGCCTTGGTACGAGCCGTTACCTCGAGCACCATCGATATTAGCCG
518 AACACCATCGACACATGTCAGGCCTTGGTACGAGCCATTACCTCGAGCACCATCGACACCAGCCG
** * * *
2849534 ACCTTTGGTGTGAATAGTTGCCTCGACCACCATCGACACAAGATGGCCCCTAGTACGAGCAATTG
583 ACCTTTGGTACGAAGAGTTGCCTCAACCACCATCGACACAACATGGCCCCTAGTACGAGCAATTG
*
2849599 CGTCTATCACCATCGACACATGCAAGG
648 CGTCTAACACCATCGACACATGCAAGG
* ** * * * *
2849626 CTTTGGTACGGGCGGTTGCCTCGACCACCATCGATAAAAGATGGCCCTGGTGCGGGTGGTTGCCT
1 CCTTGGTACGGGCAATTACCTCGACCACCATCGACAAAAGATGGCCCTGGTGAGGGCGGTTGCCT
* * * * *
2849691 TGAACACCATCGGCACGTGCCGGGCCTTGGTGCGGGCAGTTGCCTCGAGCACCATCAACACTAG-
66 TGAACACCATCGACACGTGCCGAGCCTTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGT
* * *
2849755 CATGCCCTTGGTGC-GAGCAGTTGCCTTGAACACTATCGACACAAGATGGCCCCTGGGGTGGGC-
131 C-GGCCCTTGGTGCTG-GCAGTTGCCTCGAACACCATCGACACAAGATGGCCCCTGGGGTGGGCA
* * * * *
2849818 GATTGCATCGAACACCATTGGCACATGCTGGATCGTGGTG-TGAATGGTTGCCTCGACCACCATT
194 G-TTGCATCGAACACCATTGGCACATGCTGGACCATGGTGCAG-ACGGTTGCCTCGACCACCATC
** * *
2849882 GGCACATG-TCGAGCTTTGGTACAGGCGGTTACCTCGAACACTATCAGCACGTGTCAG-GCCTTG
257 AACACATGCT-GAGCCTTGGTACAGGCAGTTACCTCGAACACTATCAGCACGTG-CAGAGCCTTG
** * * *
2849945 GTACGGGCCGTTGCCCTGAGCACCATCGACACCAG-CAGGCCCTTGGTACTAGCAGTTGCCTCGA
320 GTACAAGCCGTTACCCCGAGCACCATCGACACCAGTCA-GCCCTTGGTACGAGCAGTTGCCTCGA
* ** * *
2850009 ACACCATC-GACATAAGCCTGCCCTTGGTGCGAGCTCTTGCCTCCACCATAATCGGTAGAAGATG
384 ACACCATCAG-CACAAGCCAACCCTTGGTGCGAGCTCTTGCCTCAACCACAATCGGTAGAAGATG
** * * **
2850073 GCCCCGGGTGCGGGTGGTTGCCTCAACCACCATCGACACATGCCGAGCCTTGGTGCGGGCGGTTA
448 GCCCCGGGTGCGGGCAGTTACCTCAACCACCATCGACACATGCCGAACCTTGGTGCGAACGGTTA
* * ** * *
2850138 CCTCGAACACCATCGGCACATGTC-GAGCCTTGGTGTGGGCCATTAGCTCGAGCACCATCGACAC
513 CCTCAAACACCATCGACACATGTCAG-GCCTTGGTACGAGCCATTACCTCGAGCACCATCGACAC
* * * * *
2850202 CAGCC-AGCCTTTGGTACG-GGCGCTTGCCTCAACCACCATCGACACAACTTGGCCCCTGGTGC-
577 CAGCCGA-CCTTTGGTACGAAGAG-TTGCCTCAACCACCATCGACACAACATGGCCCCTAGTACG
** * *
2850264 AGGCGGTTGTGTCTAACACCATCGACACATGCAGGG
640 A-GCAATTGCGTCTAACACCATCGACACATGCAAGG
* * *
2850300 CCTT-GTGCGGGCAATTACCTCGACCACCATCGGCAGAAGATGGCCCCTGGTGAGGGCGGTTGCC
1 CCTTGGTACGGGCAATTACCTCGACCACCATCGACAAAAGATGG-CCCTGGTGAGGGCGGTTGCC
* ** * *
2850364 TTGAACACCATCGACACGTGCCAAGCCTTGGTGCGGATGGTTACCTCGAGCACTATCGACACAAG
65 TTGAACACCATCGACACGTGCCGAGCCTTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAG
2850429 ATGGCCCCTG
Statistics
Matches: 667, Mismatches: 122, Indels: 30
0.81 0.15 0.04
Matches are distributed among these distances:
673 44 0.07
674 586 0.88
675 34 0.05
676 3 0.00
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.21
Consensus pattern (674 bp):
CCTTGGTACGGGCAATTACCTCGACCACCATCGACAAAAGATGGCCCTGGTGAGGGCGGTTGCCT
TGAACACCATCGACACGTGCCGAGCCTTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGT
CGGCCCTTGGTGCTGGCAGTTGCCTCGAACACCATCGACACAAGATGGCCCCTGGGGTGGGCAGT
TGCATCGAACACCATTGGCACATGCTGGACCATGGTGCAGACGGTTGCCTCGACCACCATCAACA
CATGCTGAGCCTTGGTACAGGCAGTTACCTCGAACACTATCAGCACGTGCAGAGCCTTGGTACAA
GCCGTTACCCCGAGCACCATCGACACCAGTCAGCCCTTGGTACGAGCAGTTGCCTCGAACACCAT
CAGCACAAGCCAACCCTTGGTGCGAGCTCTTGCCTCAACCACAATCGGTAGAAGATGGCCCCGGG
TGCGGGCAGTTACCTCAACCACCATCGACACATGCCGAACCTTGGTGCGAACGGTTACCTCAAAC
ACCATCGACACATGTCAGGCCTTGGTACGAGCCATTACCTCGAGCACCATCGACACCAGCCGACC
TTTGGTACGAAGAGTTGCCTCAACCACCATCGACACAACATGGCCCCTAGTACGAGCAATTGCGT
CTAACACCATCGACACATGCAAGG
Found at i:2851554 original size:135 final size:135
Alignment explanation
Indices: 2851217--2851554 Score: 446
Period size: 135 Copynumber: 2.5 Consensus size: 135
2851207 CAGGCTCTTG
* * **
2851217 CCTCGACCACCATCGGTAGAAGATGGCCCTTGGTGCGAGCGGTTGTATCGAACACCATCGGCACA
1 CCTCGACCACCATCGATAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA
* * *
2851282 TGTTGGCCCCTGGTGTGGACGGTTGCCTCGAACACCATCAACACATGCTGGGCCTTGGTGCGGGT
66 AGCTGGCCCCTGGTGTGGACGGTTGCCTCGAACACCATCAACACATGCTGGGCCTTGGTGAGGGT
*
2851347 GATTG
131 GATTA
**
2851352 CCTCGACCACCATCGATAGAAGATGGCCCTTGGTGCGGGCATTTGCCTC-AAGCACCATCGGCAC
1 CCTCGACCACCATCGATAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCAC
* * * ***
2851416 AAGCTGGCCCTTGGTGTGGATGGTTGCCTCGAACACCGTCGGTA-AGTGCTGGGCCTTGGTGAGG
65 AAGCTGGCCCCTGGTGTGGACGGTTGCCTCGAACACCATCAACACA-TGCTGGGCCTTGGTGAGG
*
2851480 GTGGTTA
129 GTGATTA
* * * * *
2851487 CCTCGACCACCATTGACAGAAGATGGCCCTTAGTGTGGGCGGTTGCCTCGACCACCATCGGCACA
1 CCTCGACCACCATCGATAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA
2851552 AGC
66 AGC
2851555 CGACCCTCTG
Statistics
Matches: 176, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
134 3 0.02
135 172 0.98
136 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (135 bp):
CCTCGACCACCATCGATAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA
AGCTGGCCCCTGGTGTGGACGGTTGCCTCGAACACCATCAACACATGCTGGGCCTTGGTGAGGGT
GATTA
Found at i:2865767 original size:135 final size:135
Alignment explanation
Indices: 2865601--2865885 Score: 322
Period size: 135 Copynumber: 2.1 Consensus size: 135
2865591 CAGGCACTTA
* * * * * * *
2865601 CCTCGACCGCCATCGACATAAGCTGGGCCCTGGTGCCGACGGTTACCTCGATCACCATCGGCACA
1 CCTCGACCACCATCGACATAAGATGGCCCCTGGTACCGACAGTTACATCGAACACCATCGGCACA
* * * * *
2865666 TG-TCAACCCTTGGTGTGGGTGGTTACCTTGACCACCATCGATACAAGTTG-GCCCTTGGTGCGG
66 TGCT-AACCCGTGGTGTGGGCGATTACCTTGACCACCATCGACACAAGTCGAG-CCTTGGTGCGG
*
2865729 GCGGTTG
129 GCGGTGG
* * ** *
2865736 CCTTGACCACCATCGACATAAGATGGCCCCTGGTACGGGTAGTTGCATCGAACACCATCGGCACA
1 CCTCGACCACCATCGACATAAGATGGCCCCTGGTACCGACAGTTACATCGAACACCATCGGCACA
*** * *
2865801 TGCTGGGCCGTGGTGTGGGCGATTGCCTTGACCACCATCGACACATGTCGAGCCTTGGTGCGGGC
66 TGCTAACCCGTGGTGTGGGCGATTACCTTGACCACCATCGACACAAGTCGAGCCTTGGTGCGGGC
2865866 GGTGG
131 GGTGG
*
2865871 CCTCGAACACCATCG
1 CCTCGACCACCATCG
2865886 GCATGTGCTG
Statistics
Matches: 123, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
135 121 0.98
136 2 0.02
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.21
Consensus pattern (135 bp):
CCTCGACCACCATCGACATAAGATGGCCCCTGGTACCGACAGTTACATCGAACACCATCGGCACA
TGCTAACCCGTGGTGTGGGCGATTACCTTGACCACCATCGACACAAGTCGAGCCTTGGTGCGGGC
GGTGG
Found at i:2865877 original size:90 final size:90
Alignment explanation
Indices: 2865653--2865930 Score: 265
Period size: 90 Copynumber: 3.1 Consensus size: 90
2865643 TTACCTCGAT
* * * * * * * ** * * *
2865653 CACCATCGGCACATGTCAACCCTTGGTGTGGGTGGTTACCTTGACCACCATCGATACAAGTTGGC
1 CACCATCGACACATGTCGAGCCTTGGTGCGGGTGGTTGCCTCGAACACCATCGGCACATGCTGGG
* *
2865718 CCTTGGTGCGGGCGGTTGCCTTGAC
66 CCTTGGTGTGGGCGATTGCCTTGAC
* * * * * *
2865743 CACCATCGACATAAGAT-G-GCCCCTGGTACGGGTAGTTGCATCGAACACCATCGGCACATGCTG
1 CACCATCGACACATG-TCGAG-CCTTGGTGCGGGTGGTTGCCTCGAACACCATCGGCACATGCTG
*
2865806 GGCCGTGGTGTGGGCGATTGCCTTGAC
64 GGCCTTGGTGTGGGCGATTGCCTTGAC
* * **
2865833 CACCATCGACACATGTCGAGCCTTGGTGCGGGCGGTGGCCTCGAACACCATCGGCATGTGCTGGG
1 CACCATCGACACATGTCGAGCCTTGGTGCGGGTGGTTGCCTCGAACACCATCGGCACATGCTGGG
* *
2865898 CCTTGGTGTGGGTC-ATTGCCTCGAG
66 CCTTGGTGTGGG-CGATTGCCTTGAC
2865923 CACCATCG
1 CACCATCG
2865931 GCACCAACTG
Statistics
Matches: 149, Mismatches: 34, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
89 1 0.01
90 145 0.97
91 3 0.02
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (90 bp):
CACCATCGACACATGTCGAGCCTTGGTGCGGGTGGTTGCCTCGAACACCATCGGCACATGCTGGG
CCTTGGTGTGGGCGATTGCCTTGAC
Found at i:2865927 original size:135 final size:135
Alignment explanation
Indices: 2865676--2865982 Score: 327
Period size: 135 Copynumber: 2.3 Consensus size: 135
2865666 TGTCAACCCT
* * * * * *
2865676 TGGTGTGGGTGGTTACCTTGACCACCATCGATACAAGTTGGCCCTTGGTGCGGGCGGTTGCCTTG
1 TGGTGTGGGCGATTACCTTGACCACCATCGACACAAGTCGGCCCTTGGTGCGGGCGGTGGCCTCG
*
2865741 ACCACCATCGACATAAGATGGCCCCTGGTACGGGTAGTTGCATCGAACACCATCGGCACATGCTG
66 AACACCATCGACATAAGATGGCCCCTGGTACGGGTAGTTGCATCGAACACCATCGGCACATGCTG
2865806 GGCCG
131 GGCCG
* *
2865811 TGGTGTGGGCGATTGCCTTGACCACCATCGACACATGTCGAG-CCTTGGTGCGGGCGGTGGCCTC
1 TGGTGTGGGCGATTACCTTGACCACCATCGACACAAGTCG-GCCCTTGGTGCGGGCGGTGGCCTC
* ** * * * ** * * *
2865875 GAACACCATCGGCATGTGCTGGGCCTTGGTGTGGGTCA-TTGCCTCGAGCACCATCGGCACCA-A
65 GAACACCATCGACATAAGATGGCCCCTGGTACGGGT-AGTTGCATCGAACACCATCGGCA-CATG
* *
2865938 CT-GACCTT
128 CTGGGCC-G
*
2865946 TGGTGTGGGC-AGTTACCTCGACCACCATCGACACAAG
1 TGGTGTGGGCGA-TTACCTTGACCACCATCGACACAAG
2865983 ATGGCCCCTA
Statistics
Matches: 142, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
134 4 0.03
135 134 0.94
136 4 0.03
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (135 bp):
TGGTGTGGGCGATTACCTTGACCACCATCGACACAAGTCGGCCCTTGGTGCGGGCGGTGGCCTCG
AACACCATCGACATAAGATGGCCCCTGGTACGGGTAGTTGCATCGAACACCATCGGCACATGCTG
GGCCG
Found at i:2865997 original size:45 final size:45
Alignment explanation
Indices: 2865593--2866005 Score: 219
Period size: 45 Copynumber: 9.2 Consensus size: 45
2865583 CTTTGGTACA
* * * **
2865593 GGCACTTACCTCGACCGCCATCGACATAAGCTGGGCCC-TGGTGCC
1 GGCAGTTACCTCGACCACCATCGACACAAGCT-GGCCCTTGGTGTG
* * * * * **
2865638 GACGGTTACCTCGATCACCATCGGCACATG-TCAACCCTTGGTGTG
1 GGCAGTTACCTCGACCACCATCGACACAAGCT-GGCCCTTGGTGTG
** * * * *
2865683 GGTGGTTACCTTGACCACCATCGATACAAGTTGGCCCTTGGTGCG
1 GGCAGTTACCTCGACCACCATCGACACAAGCTGGCCCTTGGTGTG
* * * * * * **
2865728 GGCGGTTGCCTTGACCACCATCGACATAAGATGGCCCCTGGTACG
1 GGCAGTTACCTCGACCACCATCGACACAAGCTGGCCCTTGGTGTG
* * * * * * * *
2865773 GGTAGTTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTGTG
1 GGCAGTTACCTCGACCACCATCGACACAAGCTGGCCCTTGGTGTG
* * * *
2865818 GGC-GATTGCCTTGACCACCATCGACACATG-TCGAG-CCTTGGTGCG
1 GGCAG-TTACCTCGACCACCATCGACACAAGCT-G-GCCCTTGGTGTG
* ** * * *** *
2865863 GGCGGTGGCCTCGAACACCATCGGCATGTGCTGGGCCTTGGTGTG
1 GGCAGTTACCTCGACCACCATCGACACAAGCTGGCCCTTGGTGTG
* * * * *
2865908 GGTCA-TTGCCTCGAGCACCATCGGCACCAA-CTGACCTTTGGTGTG
1 GG-CAGTTACCTCGACCACCATCGACA-CAAGCTGGCCCTTGGTGTG
* * *
2865953 GGCAGTTACCTCGACCACCATCGACACAAGATGGCCCCTAGTGTG
1 GGCAGTTACCTCGACCACCATCGACACAAGCTGGCCCTTGGTGTG
2865998 GGCAGTTA
1 GGCAGTTA
2866006 TGTTGAATAC
Statistics
Matches: 282, Mismatches: 74, Indels: 24
0.74 0.19 0.06
Matches are distributed among these distances:
44 12 0.04
45 265 0.94
46 5 0.02
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (45 bp):
GGCAGTTACCTCGACCACCATCGACACAAGCTGGCCCTTGGTGTG
Found at i:2867059 original size:45 final size:45
Alignment explanation
Indices: 2866977--2867532 Score: 258
Period size: 45 Copynumber: 12.4 Consensus size: 45
2866967 GTACGAGTGA
* * * * *
2866977 TTGCATCGAACACCATCGGCACATA-CTGGCCCCTGGTGTGGGTGG
1 TTGCCTCGAACACCATCGGTATA-AGCTGGCCCTTGGTGTGGGCGG
* ** * *
2867022 TTGCCTCGAACACCATCGGGATGTGCTGGGCCTTGGTGCGGGCGG
1 TTGCCTCGAACACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
** * * * *
2867067 TTTTCTCGACCACCATCGGTAAAAGATGGCCCTTGGTGTGGGCAG
1 TTGCCTCGAACACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
** **
2867112 TTGCCTC-AACCACCATCGGTATAAGCTGGCCCTTGGTGCAGGCTC
1 TTGCCTCGAA-CACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
* * ** * * * * *
2867157 TTGCCTCGACCACTATCGACAGAAGATGGCCCCTGGTATGGGCAG
1 TTGCCTCGAACACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
** * * * * * * * *
2867202 TTGTGTCAAACACCATTGGCACATGCTGGCCCCTAGTGTGGACGG
1 TTGCCTCGAACACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
* * * *** * * * * *
2867247 TTACCGT-GAACACCATTGGCACGTGTTGGGCCTTAGTGCGGGTGG
1 TTGCC-TCGAACACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
* * * * ** **
2867292 TTACCTCGACCACCATCTGTAGAAAATGGCCCTTGGTGCAGGCGG
1 TTGCCTCGAACACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
* * * *
2867337 TTGCCTC-AAGCACCATCGGTACAAGTTGGTCCTTGGTGCGGGCGG
1 TTGCCTCGAA-CACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
** *** * * *
2867382 TTGCCTCGAACACCATCGACACGTGCTGGGCTTTGGTGTAGGCGG
1 TTGCCTCGAACACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
* * * * * **
2867427 TTGCCTC-AACCACCATCGGTACAAACCGACCCTTGGTGCGGGCTC
1 TTGCCTCGAA-CACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
* * * * * * *
2867472 TTGCCTCGACCACCATCAGCAAAAGATGGCCCTTGGTGCGGGCAG
1 TTGCCTCGAACACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
* *
2867517 TTGCATTGAACACCAT
1 TTGCCTCGAACACCAT
2867533 TCGCACATAC
Statistics
Matches: 380, Mismatches: 122, Indels: 18
0.73 0.23 0.03
Matches are distributed among these distances:
44 5 0.01
45 370 0.97
46 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGGTATAAGCTGGCCCTTGGTGTGGGCGG
Done.