Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 23 of 93
Found at i:2867225 original size:225 final size:225
Alignment explanation
Indices: 2866985--2867402 Score: 561
Period size: 225 Copynumber: 1.9 Consensus size: 225
2866975 GATTGCATCG
* ** * * *
2866985 AACACCATCGGCACATACTGGCCCCTGGTGTGGGTGGTTGCC-TCGAACACCATCGGGATGTGCT
1 AACACCATCGGCACATACTGGCCCCTAGTGTGGACGGTTACCGT-GAACACCATCGGCACGTGCT
* ** **
2867049 GGGCCTTGGTGCGGGCGGTTTTCTCGACCACCATCGGTA-AAAGATGGCCCTTGGTGTGGGCAGT
65 GGGCCTTAGTGCGGGCGGTTACCTCGACCACCATCGGTAGAAA-ATGGCCCTTGGTGCAGGCAGT
* * * *
2867113 TGCCTCAACCACCATCGGTATAAGCTGGCCCTTGGTGCAGGCTCTTGCCTCGACCACTATCGACA
129 TGCCTCAACCACCATCGGTACAAGCTGGCCCTTGGTGCAGGCGCTTGCCTCGAACACCATCGACA
2867178 GAAGATGGCCCCTGGTATGGGCAGTTGTGTCA
194 GAAGATGGCCCCTGGTATGGGCAGTTGTGTCA
* * * *
2867210 AACACCATTGGCACATGCTGGCCCCTAGTGTGGACGGTTACCGTGAACACCATTGGCACGTGTTG
1 AACACCATCGGCACATACTGGCCCCTAGTGTGGACGGTTACCGTGAACACCATCGGCACGTGCTG
* * *
2867275 GGCCTTAGTGCGGGTGGTTACCTCGACCACCATCTGTAGAAAATGGCCCTTGGTGCAGGCGGTTG
66 GGCCTTAGTGCGGGCGGTTACCTCGACCACCATCGGTAGAAAATGGCCCTTGGTGCAGGCAGTTG
* * * * *
2867340 CCTCAAGCACCATCGGTACAAGTTGGTCCTTGGTGCGGGCGGTTGCCTCGAACACCATCGACA
131 CCTCAACCACCATCGGTACAAGCTGGCCCTTGGTGCAGGCGCTTGCCTCGAACACCATCGACA
2867403 CGTGCTGGGC
Statistics
Matches: 164, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
225 160 0.98
226 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (225 bp):
AACACCATCGGCACATACTGGCCCCTAGTGTGGACGGTTACCGTGAACACCATCGGCACGTGCTG
GGCCTTAGTGCGGGCGGTTACCTCGACCACCATCGGTAGAAAATGGCCCTTGGTGCAGGCAGTTG
CCTCAACCACCATCGGTACAAGCTGGCCCTTGGTGCAGGCGCTTGCCTCGAACACCATCGACAGA
AGATGGCCCCTGGTATGGGCAGTTGTGTCA
Found at i:2867551 original size:45 final size:45
Alignment explanation
Indices: 2867322--2867598 Score: 120
Period size: 45 Copynumber: 6.2 Consensus size: 45
2867312 AGAAAATGGC
* * * ***
2867322 CCTTGGTGCAGGCGGTTGCCTC-AAGCACCATCGGTACA-AGTTGG
1 CCTTGGTGCAGGCAGTTGCATCGAA-CACCATCGGCACATACCAGG
* * * * * * **
2867366 TCCTTGGTGCGGGCGGTTGCCTCGAACACCATCGACACGTGCTGGG
1 -CCTTGGTGCAGGCAGTTGCATCGAACACCATCGGCACATACCAGG
* * * * * * *
2867412 CTTTGGTGTAGGCGGTTGCCTC-AACCACCATCGGTACAAACC-GAC
1 CCTTGGTGCAGGCAGTTGCATCGAA-CACCATCGGCACATACCAG-G
* ** * * * **
2867457 CCTTGGTGCGGGCTCTTGCCTCGACCACCATCAGCA-A-AAGATGG
1 CCTTGGTGCAGGCAGTTGCATCGAACACCATCGGCACATACCA-GG
* *
2867501 CCCTTGGTGCGGGCAGTTGCATTGAACACCATTC-GCACATACC-GAG
1 -CCTTGGTGCAGGCAGTTGCATCGAACACCA-TCGGCACATACCAG-G
* * *
2867547 CCTTGGTGCAGGTAGTTGCCTCGAACACCATCGGCACATGCCAGG
1 CCTTGGTGCAGGCAGTTGCATCGAACACCATCGGCACATACCAGG
2867592 CCTTGGT
1 CCTTGGT
2867599 ATGGGCACAT
Statistics
Matches: 178, Mismatches: 40, Indels: 28
0.72 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 6 0.03
45 159 0.89
46 11 0.06
47 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (45 bp):
CCTTGGTGCAGGCAGTTGCATCGAACACCATCGGCACATACCAGG
Found at i:2867553 original size:135 final size:135
Alignment explanation
Indices: 2867321--2867580 Score: 299
Period size: 135 Copynumber: 1.9 Consensus size: 135
2867311 TAGAAAATGG
* * * * * * * *
2867321 CCCTTGGTGCAGGCGGTTGCCTCAAGCACCATCGGTACAAGTTGGTCCTTGGTGCGGGCGGTTGC
1 CCCTTGGTGCAGGCGCTTGCCTCAACCACCATCAGCAAAAGATGGCCCTTGGTGCGGGCAGTTGC
* * * * * * * *
2867386 CTCGAACACCATCGACACGTGCTGGGCTTTGGTGTAGGCGGTTGCCTC-AACCACCATCGGTACA
66 ATCGAACACCATCGACACATACCGAGCCTTGGTGCAGGCAGTTGCCTCGAA-CACCATCGGTACA
2867450 AACCGA
130 AACCGA
* * *
2867456 CCCTTGGTGCGGGCTCTTGCCTCGACCACCATCAGCAAAAGATGGCCCTTGGTGCGGGCAGTTGC
1 CCCTTGGTGCAGGCGCTTGCCTCAACCACCATCAGCAAAAGATGGCCCTTGGTGCGGGCAGTTGC
* *
2867521 ATTGAACACCATTCG-CACATACCGAGCCTTGGTGCAGGTAGTTGCCTCGAACACCATCGG
66 ATCGAACACCA-TCGACACATACCGAGCCTTGGTGCAGGCAGTTGCCTCGAACACCATCGG
2867581 CACATGCCAG
Statistics
Matches: 102, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
135 97 0.95
136 5 0.05
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (135 bp):
CCCTTGGTGCAGGCGCTTGCCTCAACCACCATCAGCAAAAGATGGCCCTTGGTGCGGGCAGTTGC
ATCGAACACCATCGACACATACCGAGCCTTGGTGCAGGCAGTTGCCTCGAACACCATCGGTACAA
ACCGA
Found at i:2867667 original size:45 final size:45
Alignment explanation
Indices: 2867618--2867763 Score: 127
Period size: 45 Copynumber: 3.2 Consensus size: 45
2867608 TGCCTTAAGC
* * *
2867618 TGGTGAGGGCGGT-TGCCTCGACCACCATCGGCACACACTGGCCTT
1 TGGTGAGGGCAGTCT-CATCGACCACCATCGGCACACACTGGCCCT
* * **
2867663 TGGTGTGGGCAGTCTCATCGACCACCATTGGCACACGTTGGCCCT
1 TGGTGAGGGCAGTCTCATCGACCACCATCGGCACACACTGGCCCT
* * * * *
2867708 TGGTGCGGGCAGTCGCATTGACC-CCTATCGACATGA-ACTGGCCCT
1 TGGTGAGGGCAGTCTCATCGACCACC-ATCGGCA-CACACTGGCCCT
*
2867753 TGGTGTGGGCA
1 TGGTGAGGGCA
2867764 CATGCCCCAA
Statistics
Matches: 82, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
44 2 0.02
45 78 0.95
46 2 0.02
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.23
Consensus pattern (45 bp):
TGGTGAGGGCAGTCTCATCGACCACCATCGGCACACACTGGCCCT
Found at i:2875698 original size:26 final size:26
Alignment explanation
Indices: 2875669--2875718 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
2875659 CTGTATACTA
*
2875669 AGACTGGGAAAGAAATCCGTATGCTT
1 AGACTAGGAAAGAAATCCGTATGCTT
* *
2875695 AGACTAGGAATGAACTCCGTATGC
1 AGACTAGGAAAGAAATCCGTATGC
2875719 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (26 bp):
AGACTAGGAAAGAAATCCGTATGCTT
Found at i:2876722 original size:45 final size:45
Alignment explanation
Indices: 2876673--2877353 Score: 481
Period size: 45 Copynumber: 15.1 Consensus size: 45
2876663 ATACAGGCAC
* * * * *
2876673 TTGCCTCGATCGCCATCGGCACAAGCTGGGCCCTGGTGCAGACGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* * ** * **
2876718 TTGCCTCGATCACCATCGGCACATG-TCAGCCCTTGGTGTGGGTAG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCC-TGGTGCGGGCGG
*** * *
2876763 TTGCCTCGACCACCATCGGCACAAG-TTTACCCTTGGTACAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCC-TGGTGCGGGCGG
* * * *
2876808 TTGCCTCGACCACCATCGACACAAGATGGCCCCTGATGCGGGCAG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
** *** * * * * *
2876853 TTGTATCGAATGCCATCGGCACATGTTGGGCCATGGTACGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* * * * ** * *
2876898 TAGCCTCAACCACCATCGACAAAAGATGGAACCTGGTACGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* * * * * **
2876943 TTGCATCGAGCACCATCAGCACATGCTGGGCTTTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* * *
2876988 TTGCCTTGACCACCATCGGCACAAGAT-GGCCTCTGGTGTGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCC-CTGGTGCGGGCGG
* * * ** *** * *
2877033 TTGCCTCAAACACCATCGACACGTGCCAGGCCTTGGTGCGGGCAG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* * *
2877078 TTGCCTCGAGCACCATCGGCACTAG-TGGGCCCTTGGTGCTGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCC-TGGTGCGGGCGG
* * *
2877123 TTGCCTCGACCACCATCGACACAAGATGGCCCCTGGTACGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* * * * * * *
2877168 TTGCATCGAACACCATCGGCACATGCTGGGTCATGGTACGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* * * * **
2877213 TTGCCTCGACCACCATCGACATAAGAT-GGCTTCTGTTGCAAGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGC-CCTGGTGCGGGCGG
* * * * *
2877258 TTGCATCGAACACCATCGGCACAAGATGGCCCCTAGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* * * * * *
2877303 TTGCATCGAACACCATTGGCACATGCTGGGCCTTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
2877348 TTGCCT
1 TTGCCT
2877354 TGGCCTCTGG
Statistics
Matches: 478, Mismatches: 150, Indels: 16
0.74 0.23 0.02
Matches are distributed among these distances:
44 14 0.03
45 448 0.94
46 16 0.03
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
Found at i:2877365 original size:25 final size:24
Alignment explanation
Indices: 2877331--2877378 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
2877321 GCACATGCTG
*
2877331 GGCCTTGGTGCGGGCGGTTGCCTT
1 GGCCTTGGTGCGGACGGTTGCCTT
*
2877355 GGCCTCTGGTGCGGATGGTTGCCT
1 GGCCT-TGGTGCGGACGGTTGCCT
2877379 CGAACACCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.02, C:0.25, G:0.44, T:0.29
Consensus pattern (24 bp):
GGCCTTGGTGCGGACGGTTGCCTT
Found at i:2877420 original size:70 final size:70
Alignment explanation
Indices: 2877284--2877423 Score: 172
Period size: 70 Copynumber: 2.0 Consensus size: 70
2877274 CGGCACAAGA
* * *** * *
2877284 TGGCCCCTAGTGCGGGTGGTTGCATCGAACACCATTGGCACATGCTGGGCCTTGGTGCGGGCGGT
1 TGGCCCCTAGTGCGGATGGTTGCATCGAACACCATTGACACATGCCAAGCCTTGGTGCGAGAGGT
2877349 TGCCT
66 TGCCT
* * * * *
2877354 TGGCCTCTGGTGCGGATGGTTGCCTCGAACACCATTGACACGTGCCAAGCCTTGGTGTGAGAGGT
1 TGGCCCCTAGTGCGGATGGTTGCATCGAACACCATTGACACATGCCAAGCCTTGGTGCGAGAGGT
2877419 TGCCT
66 TGCCT
2877424 CGACCACCAT
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
70 58 1.00
ACGTcount: A:0.14, C:0.26, G:0.35, T:0.25
Consensus pattern (70 bp):
TGGCCCCTAGTGCGGATGGTTGCATCGAACACCATTGACACATGCCAAGCCTTGGTGCGAGAGGT
TGCCT
Found at i:2877455 original size:45 final size:45
Alignment explanation
Indices: 2877416--2877755 Score: 286
Period size: 45 Copynumber: 7.6 Consensus size: 45
2877406 TGGTGTGAGA
*
2877416 GGTTGCCTCGACCACCATTGGCACAAGATGGCCCCTGGTGCGGGC
1 GGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGC
* * * * * *
2877461 GGTTGCATCGAACACCATCGGTA-AATGCTGGGCCTTGGTGCGGGC
1 GGTTGCCTCGACCACCATCGGCACAA-GATGGCCCCTGGTGCGGGC
** * ** * * * * *
2877506 GGTTGCCTTAAACACCATCGATACACGTTGGGCCTTGGTGCAGGC
1 GGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGC
* * ** * *
2877551 GGTTGGCTCAACCACCATCGATAGAAGATAGCCCCTGGTGCGGGC
1 GGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGC
* * * ** * *
2877596 GGTTGCCTCGAGCACCATTGGCATAAGCCGGCCCTTGGTGCAGGC
1 GGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGC
** * * * * *
2877641 TCTTGCCTCGACCACAATCGACAAAAGGTGGCCCCTGGTGCGGGT
1 GGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGC
* *
2877686 GGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGT
1 GGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGC
* * *
2877731 AGTTGCGTCGAACACCATCGGCACA
1 GGTTGCCTCGACCACCATCGGCACA
2877756 TGCTGGGCCT
Statistics
Matches: 235, Mismatches: 58, Indels: 4
0.79 0.20 0.01
Matches are distributed among these distances:
44 2 0.01
45 232 0.99
46 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (45 bp):
GGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGC
Found at i:2877612 original size:135 final size:135
Alignment explanation
Indices: 2877416--2877771 Score: 381
Period size: 135 Copynumber: 2.6 Consensus size: 135
2877406 TGGTGTGAGA
* * *
2877416 GGTTGCCTCGACCACCATTGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCG
1 GGTTGCCTCAACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCG
* * * * * * * * * * *
2877481 GTAAATGCTGGGCCTTGGTGCGGGCGGTTGCCTTAAACACCATCGATACACGTTGGGCCTTGGTG
66 GCAAATGCTGGGCCTTGGTGCAGGCGCTTGCCTCAAACACAATCGACAAAAGGTGGCCCCTGGTG
2877546 CAGGC
131 CAGGC
* * * * * * *
2877551 GGTTGGCTCAACCACCATCGATAGAAGATAGCCCCTGGTGCGGGCGGTTGCCTCGAGCACCATTG
1 GGTTGCCTCAACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCG
* * * * *
2877616 GCATAA-GCCGGCCCTTGGTGCAGGCTCTTGCCTCGACCACAATCGACAAAAGGTGGCCCCTGGT
66 GCA-AATGCTGGGCCTTGGTGCAGGCGCTTGCCTCAAACACAATCGACAAAAGGTGGCCCCTGGT
* *
2877680 GCGGGT
130 GCAGGC
* * * ** *
2877686 GGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGTAGTTGCGTCGAACACCATCG
1 GGTTGCCTCAACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCG
*
2877751 GCACATGCTGGGCCTTGGTGC
66 GCAAATGCTGGGCCTTGGTGC
2877772 TGGTGTCACA
Statistics
Matches: 176, Mismatches: 43, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
134 1 0.01
135 173 0.98
136 2 0.01
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (135 bp):
GGTTGCCTCAACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCG
GCAAATGCTGGGCCTTGGTGCAGGCGCTTGCCTCAAACACAATCGACAAAAGGTGGCCCCTGGTG
CAGGC
Found at i:2890053 original size:180 final size:178
Alignment explanation
Indices: 2889844--2890374 Score: 521
Period size: 180 Copynumber: 3.0 Consensus size: 178
2889834 ACATGTTGGC
* * * *
2889844 CCCTGGTACGGGTGGTTGCCTCAAACACCATCGGCACGTGCTGAGCCTTGGTGCTGGCAGTTGCC
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACGTGCTG-GCCTTGGTGCGGGCAGTTGCC
* * *
2889909 TCGACCACCATCGGTAGAAGATGGCCCTTGGTACGGGCGGTTGCCTCGACCACCATCAGCACAAG
65 TCGACCACCATCGGTAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCAGCACATG
* * *
2889974 TCGACCCTTGGTGCGGGCTCTTGCCTCGACCACCGTCGGTAAAAGATGG
130 TCGAGCCTTGGTGCGGGCTCTTACCTCGACCACCATCGGTAAAAGATGG
* * * * * *
2890023 CCACTGGTGCGGGCGATTGCATCGAACACCATCGGCACATGATGGCCTCTGGTGAGGGCGGTTGC
1 CC-CTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACGTGCTGGCCT-TGGTGCGGGCAGTTGC
* * * * * *
2890088 CTCGACCACCATCAGTAGAAGATGACCCTTGGTGCGGGTGGTTACCTCGAACACCA-CCG-GCAT
64 CTCGACCACCATCGGTAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCAGCACAT
* * ** * *
2890151 GTGCTGGGCCTTGGTGCAGGCAGTTACCTTGACCACCATCGGTAGAAGATGG
129 GT-C-GAGCCTTGGTGCGGGCTCTTACCTCGACCACCATCGGTAAAAGATGG
* * * * **
2890203 TCCTTGGTGCGGACGGTTCCCTCGACCACCATCGGCACAAGT-C-GGCCCTTGGTGCGGGCTCTT
1 -CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCAC--GTGCTGG-CCTTGGTGCGGGCAGTT
* * ** * * * * * *
2890266 GCCTTGACCAACATCGACAAAAGATGGCCCCTGGTGTGGGCGGTTGCATCAAACACCATCGGCAC
62 GCCTCGACCACCATCGGTAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCAGCAC
* * * *
2890331 ATGTCGAGCCTTGGTGCGGGCTGTTACCTTGAACACCATTGGTA
127 ATGTCGAGCCTTGGTGCGGGCTCTTACCTCGACCACCATCGGTA
2890375 CATGCCAGGC
Statistics
Matches: 283, Mismatches: 59, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
178 4 0.01
179 9 0.03
180 256 0.90
181 8 0.03
182 6 0.02
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (178 bp):
CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACGTGCTGGCCTTGGTGCGGGCAGTTGCCT
CGACCACCATCGGTAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCAGCACATGT
CGAGCCTTGGTGCGGGCTCTTACCTCGACCACCATCGGTAAAAGATGG
Found at i:2890208 original size:45 final size:45
Alignment explanation
Indices: 2889721--2890329 Score: 460
Period size: 45 Copynumber: 13.5 Consensus size: 45
2889711 TTGGTGCATA
* * * *
2889721 CGGTTGCCTCGAGCACCATCGACACAAG-TCGACCCTTGGTGCGGG
1 CGGTTGCCTCGACCACCATCGGCAGAAGAT-GGCCCTTGGTGCGGG
** * **
2889766 CTCTTGCCTCGACCACCATCGACAGAAGATGGCCCTTGGTATGGG
1 CGGTTGCCTCGACCACCATCGGCAGAAGATGGCCCTTGGTGCGGG
* * * * * * * *
2889811 CGGTTGCGTCGAACACCATCGACACATGTTGGCCCCTGGTACGGG
1 CGGTTGCCTCGACCACCATCGGCAGAAGATGGCCCTTGGTGCGGG
* * * * * *
2889856 TGGTTGCCTCAAACACCATCGGCACG-TGCTGAG-CCTTGGTGCTGG
1 CGGTTGCCTCGACCACCATCGGCA-GAAGATG-GCCCTTGGTGCGGG
* * *
2889901 CAGTTGCCTCGACCACCATCGGTAGAAGATGGCCCTTGGTACGGG
1 CGGTTGCCTCGACCACCATCGGCAGAAGATGGCCCTTGGTGCGGG
* * *
2889946 CGGTTGCCTCGACCACCATCAGCACAAG-TCGACCCTTGGTGCGGG
1 CGGTTGCCTCGACCACCATCGGCAGAAGAT-GGCCCTTGGTGCGGG
** * * *
2889991 CTCTTGCCTCGACCACCGTCGGTAAAAGATGGCCAC-TGGTGCGGG
1 CGGTTGCCTCGACCACCATCGGCAGAAGATGGCC-CTTGGTGCGGG
* * * * * *
2890036 CGATTGCATCGAACACCATCGGCACATGATGG-CCTCTGGTGAGGG
1 CGGTTGCCTCGACCACCATCGGCAGAAGATGGCCCT-TGGTGCGGG
* * *
2890081 CGGTTGCCTCGACCACCATCAGTAGAAGATGACCCTTGGTGCGGG
1 CGGTTGCCTCGACCACCATCGGCAGAAGATGGCCCTTGGTGCGGG
* * * * * * * *
2890126 TGGTTACCTCGAACACCACCGGCATG-TGCTGGGCCTTGGTGCAGG
1 CGGTTGCCTCGACCACCATCGGCA-GAAGATGGCCCTTGGTGCGGG
* * * * * *
2890171 CAGTTACCTTGACCACCATCGGTAGAAGATGGTCCTTGGTGCGGA
1 CGGTTGCCTCGACCACCATCGGCAGAAGATGGCCCTTGGTGCGGG
* *
2890216 CGGTTCCCTCGACCACCATCGGCACAAG-TCGGCCCTTGGTGCGGG
1 CGGTTGCCTCGACCACCATCGGCAGAAGAT-GGCCCTTGGTGCGGG
** * * * * * *
2890261 CTCTTGCCTTGACCAACATCGACAAAAGATGGCCCCTGGTGTGGG
1 CGGTTGCCTCGACCACCATCGGCAGAAGATGGCCCTTGGTGCGGG
* * *
2890306 CGGTTGCATCAAACACCATCGGCA
1 CGGTTGCCTCGACCACCATCGGCA
2890330 CATGTCGAGC
Statistics
Matches: 438, Mismatches: 111, Indels: 30
0.76 0.19 0.05
Matches are distributed among these distances:
43 1 0.00
44 6 0.01
45 422 0.96
46 9 0.02
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.21
Consensus pattern (45 bp):
CGGTTGCCTCGACCACCATCGGCAGAAGATGGCCCTTGGTGCGGG
Found at i:2897921 original size:26 final size:26
Alignment explanation
Indices: 2897881--2897933 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2897871 TCGGTTCGAT
*
2897881 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2897907 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2897933 C
1 C
2897934 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2898335 original size:173 final size:167
Alignment explanation
Indices: 2897906--2898459 Score: 546
Period size: 171 Copynumber: 3.2 Consensus size: 167
2897896 AACTCTGTAT
* * * *
2897906 GCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGTGCTGAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGG-GCTCAA
* * * **
2897971 CCGGCCAGAGAGGCATAATGCGCAAGCTGGGGATCGA-TCGATCCCCCCTCTATATGCTGTCGAT
65 CC-GCCAGAGAGGCAGAATGCGCAAGC-CGGGATCGACCCGATCCCCCCTCTGCATGCTGTCGAT
* * * **
2898035 CTCGCTGTCGGTCCTGC-TACCATAACCCTCGATC-CGACTGGG
128 CTCGCTGTCGGTCCTGCTTA-C--AACCCTCGGTCTAGTCT-AA
* * ** *
2898077 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCCAGGGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTG-CAGGGCTCAA
* *
2898142 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCC-CTGCGTGCTGTCGAT
65 CCG-CCAGAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGATCCCCCCTCTGCATGCTGTCGAT
* *
2898206 C-CTACTG-CTGGTCCTGCTGTAGCAACCCTCGGTCTGGTCTATA
128 CTC-GCTGTC-GGTCCTGCT-TA-CAACCCTCGGTCTAGTCTA-A
2898249 CGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGCGCTCA
1 -GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGG-GCTCA
* * * * * * *
2898314 GCCAGCCAGAGAGGTAGAATGCGTAAGTCGAGGATCGACCCG-GCCCCCCTCTGCATGCTATTGA
64 ACC-GCCAGAGAGGCAGAATGCGCAAGCCG-GGATCGACCCGATCCCCCCTCTGCATGCTGTCGA
* * * *
2898378 TCTCGCTGTGGGTCCTGCTATCACAACCCTCAGTTTAGTCCAA
127 TCTCGCTGTCGGTCCTGCT-T-ACAACCCTCGGTCTAGTCTAA
* *
2898421 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
2898460 TACGAAACAA
Statistics
Matches: 319, Mismatches: 46, Indels: 36
0.80 0.11 0.09
Matches are distributed among these distances:
170 3 0.01
171 154 0.48
172 28 0.09
173 131 0.41
174 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (167 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGGCTCAAC
CGCCAGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCCTCTGCATGCTGTCGATCTC
GCTGTCGGTCCTGCTTACAACCCTCGGTCTAGTCTAA
Found at i:2899356 original size:45 final size:45
Alignment explanation
Indices: 2899302--2899962 Score: 286
Period size: 45 Copynumber: 14.7 Consensus size: 45
2899292 ACATAAGCTG
* * *
2899302 GGCCC-TGGTGTGGGCGGTTGCCTCAATCACCATCGGTACATGTC
1 GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATGTC
* * * * * *
2899346 GGCCCTTGGTGCAGGCCGTTGCCTCGACCACCATTGGCACAAGCC
1 GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATGTC
* * * * * * *
2899391 AGCCTTTGGTACAGGTGGTTGCCTCAACCACCATCGACACAAGAT-
1 GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATG-TC
* *** * * * * *
2899436 GGCCCCTGGCAAGGGTGGTTGCATCAAACACCATCGACAGATG-C
1 GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATGTC
* * * * * * *
2899480 AGGGCCATGGTGCGGGCGGTTGCCTCGACCACTATCAGTACATGCC
1 -GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATGTC
* * * * * * *
2899526 GAG-CCTTGGTACGAGCAGTTGCCTTGAA-CACCATCAGCACGTGCC
1 G-GCCCTTGGTGCGGGCGGTTGCC-TCAACCACCATCGGCACATGTC
* * * * * *
2899571 GGGCCTTGGTGCAGGCCGTTGCCTCGAGCACCATCGGCACCA-GTT
1 GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCA-CATGTC
* * * *
2899616 GGCCCTTGGTGTGGGCGGTTGCCTCGACCACCATCGGTACAAGAT-
1 GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATG-TC
* * *** *
2899661 GGCCCCTGGTGCGGGCAGTTATGTCGAA-CACCATCGGCACATGTT
1 GGCCCTTGGTGCGGGCGGTTGCCTC-AACCACCATCGGCACATGTC
* * * * * * * *
2899706 GGGCCTTGGTACGGGCGGTTACCTCGACCACCATAGGTAGAAGAT-
1 GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATG-TC
* * * *
2899751 GGCCCCTGGTGCAGGTGGTTGCCTCGAA-CACCATCGGCACATGCC
1 GGCCCTTGGTGCGGGCGGTTGCCTC-AACCACCATCGGCACATGTC
* ** * * * * *
2899796 GGGCCTTGGTGTTGGTGGTTGCCTCCAGCACCATCAGCAC-TAGCC
1 GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCACAT-GTC
** * ** ** * *
2899841 GATCCTTGGTGCGGGCGATTGCCTTGACCACTGTCGGTACAAGAT-
1 GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATG-TC
* * * ** * * *
2899886 GGCCCCTGGTGCGGGTGATTGTGTCAAACACCATCGACACATGCTT
1 GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATG-TC
*
2899932 GG-CCTTGGTGCGGGCGATTGCCTCAACCACC
1 GGCCCTTGGTGCGGGCGGTTGCCTCAACCACC
2899963 TTTTGTCGTG
Statistics
Matches: 454, Mismatches: 140, Indels: 45
0.71 0.22 0.07
Matches are distributed among these distances:
44 14 0.03
45 429 0.94
46 11 0.02
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.21
Consensus pattern (45 bp):
GGCCCTTGGTGCGGGCGGTTGCCTCAACCACCATCGGCACATGTC
Found at i:2899806 original size:135 final size:135
Alignment explanation
Indices: 2899487--2899806 Score: 334
Period size: 135 Copynumber: 2.4 Consensus size: 135
2899477 TGCAGGGCCA
* * * * * *
2899487 TGGTGCGGGCGGTTGCCTCGACCACTATCAGTACATGCCGAGCCTTGGTACGAGCAGTTGCCTTG
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGGTACATGCCGGGCCTTGGTGCGAGCAGTTACCTCG
* * * * * * *
2899552 AACACCATCAGCACGTGCCGGGCCTTGGTGCAGGCCGTTGCCTCGAGCACCATCGGCACCAGTTG
66 AACACCATCAGCACATGCCGGGCCTTGGTACAGGCCGTTACCTCGACCACCATAGGCACAAGATG
*
2899617 GCCCT
131 GCCCC
* * ** * * * **
2899622 TGGTGTGGGCGGTTGCCTCGACCACCATCGGTACAAGATGGCCCCTGGTGCGGGCAGTTATGTCG
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGGTACATGCCGGGCCTTGGTGCGAGCAGTTACCTCG
* ** * * * *
2899687 AACACCATCGGCACATGTTGGGCCTTGGTACGGGCGGTTACCTCGACCACCATAGGTAGAAGATG
66 AACACCATCAGCACATGCCGGGCCTTGGTACAGGCCGTTACCTCGACCACCATAGGCACAAGATG
2899752 GCCCC
131 GCCCC
* * * *
2899757 TGGTGCAGGTGGTTGCCTCGAACACCATCGGCACATGCCGGGCCTTGGTG
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGGTACATGCCGGGCCTTGGTG
2899807 TTGGTGGTTG
Statistics
Matches: 145, Mismatches: 40, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
135 145 1.00
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (135 bp):
TGGTGCGGGCGGTTGCCTCGACCACCATCGGTACATGCCGGGCCTTGGTGCGAGCAGTTACCTCG
AACACCATCAGCACATGCCGGGCCTTGGTACAGGCCGTTACCTCGACCACCATAGGCACAAGATG
GCCCC
Found at i:2904264 original size:26 final size:26
Alignment explanation
Indices: 2904226--2904278 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2904216 CAGGTTCGAT
* *
2904226 CTTAGATTGGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCTGCATG
*
2904252 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGCATG
2904278 C
1 C
2904279 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGCATG
Found at i:2904688 original size:173 final size:171
Alignment explanation
Indices: 2904249--2904689 Score: 401
Period size: 171 Copynumber: 2.6 Consensus size: 171
2904239 TGAACTCTGC
* *
2904249 ATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACA-AGCGTGTAGG-CAC
1 ATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA-AGAGCGTG-CGGACGC
* * * * * * **
2904312 TCAACCGGCCAAAGAGGCATAATGCAAAAGCCGAGGATCAGCCTGGTCCCTTTCTGCGTGCTGTC
64 TCAACCGGCCAGAGAGGCAAAATGCACAAGCCGAGGATCAGCCCGGTCCCTCTCTGCATGCTACC
* * *
2904377 GATCCCGCTATCGATCTTGCTACCACAACCCTCGGTCCGGTTG
129 GATCCCGCTATCGATCTTACTACCACAACCCTCGGTCCGATCG
** * * * *
2904420 GGGCTTAGAC-ATGGAATGAACT-TCGTATGCCTAAGCCAACCCATGAAAAGAGCTTACGGGA-G
1 ATGCTTAGACTA-GGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAAAGAGCGTGC-GGACG
*** * * *
2904482 CTCAACCCATCGGAGAGGTAGAATGCACAAGCCGAGGATCCA-CCCGGTCCCTCTCTGCATGCTA
63 CTCAACCGGCCAGAGAGGCAAAATGCACAAGCCGAGGAT-CAGCCCGGTCCCTCTCTGCATGCTA
* * * * ** ** *
2904546 CCGATCCTGGT-GCTGGTCTTACTGTCGTAACCCTTGGTCCGATCCG
127 CCGATCCCGCTATC-GATCTTACTACCACAACCCTCGGTCCGAT-CG
* *
2904592 TATGCTTAGACTAGGAGTGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGACGCT
1 -ATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGACGCT
* * *
2904657 CAGCAGGCCAGAGAGGCAAAATGCGCAAGCCGA
65 CAACCGGCCAGAGAGGCAAAATGCACAAGCCGA
2904690 TTATGACTCG
Statistics
Matches: 208, Mismatches: 50, Indels: 22
0.74 0.18 0.08
Matches are distributed among these distances:
170 4 0.02
171 124 0.60
172 6 0.03
173 72 0.35
174 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.20
Consensus pattern (171 bp):
ATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGACGCTC
AACCGGCCAGAGAGGCAAAATGCACAAGCCGAGGATCAGCCCGGTCCCTCTCTGCATGCTACCGA
TCCCGCTATCGATCTTACTACCACAACCCTCGGTCCGATCG
Found at i:2905389 original size:11 final size:11
Alignment explanation
Indices: 2905373--2905397 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
2905363 CGGTCAGGTT
2905373 CTCCGACGATG
1 CTCCGACGATG
2905384 CTCCGACGATG
1 CTCCGACGATG
2905395 CTC
1 CTC
2905398 TGGTGATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:2905639 original size:45 final size:45
Alignment explanation
Indices: 2905590--2906815 Score: 449
Period size: 45 Copynumber: 27.2 Consensus size: 45
2905580 GCCTCATCCG
* * * *
2905590 CCATCGACACAAGCTGGGCCCTGGGGCGGCCAGTTGCCTCGATCA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * * *
2905635 CCATCGGCACATGC-CGGCCCTTGGTGCGGGCGGTTGCC-CTGACCA
1 CCATCGACACAAGCTGGGCCC-TGGTGCGGGCGGTTGCCTC-GAACA
* * * ** *
2905680 CCATCGGCACAAGATGGCCCCTGGTGCGGGCAATTGCATCGAACA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * * * * * *
2905725 CCAT-TAGCATATGCTGGGCCATGGTGCAGGCGGTAGCCTCGACCA
1 CCATCGA-CACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * ** **
2905770 CCATCGACACAAGATGGCCCCTGGTATGGGCGGTTGTGTCGAACA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * * *
2905815 CCATCGACACATGCTAGGCCTTGGTGCGGGCGGTTACCTCG-ACTA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAAC-A
* * * * * *
2905860 CCATTGACAAAAGAT-GGCCTCTGGTGCAGGCGATTGCCTCGAGCA
1 CCATCGACACAAGCTGGGCC-CTGGTGCGGGCGGTTGCCTCGAACA
* * * * ** *
2905905 CCATCGGCACAAG-TCGACCCTTGGTGCGAGCTCTTGCCTCGACCA
1 CCATCGACACAAGCTGGGCCC-TGGTGCGGGCGGTTGCCTCGAACA
* * * ** * * *
2905950 CAATCGATAGAAAATGGACCCTGGTGCGGGCGATTACCTC-AACCA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAA-CA
* * * * * * * * **
2905995 CCATCGGCATAAGATGGCCCCTAGTGCAGGTGGTCGTGTCGAACA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * * * * * * *
2906040 CCATC-AGCATATGTTGGGCCTTGGTGCTGGCGATTACCTCGACCA
1 CCATCGA-CACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
** * * * * * *
2906085 CCATCGGTACATGCTGGGACTTGGTGCGAGTGGTTACCTCGAACA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * * ** * * * * *
2906130 CTATCGGCACATGCTAAGCCTTGGTGCAGACGGTTACCTCGAGCA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * ** *
2906175 CCATC-AGCACAAGC-CGGCCCTTGGTACGGGCTCTTGCCTCGACCA
1 CCATCGA-CACAAGCTGGGCCC-TGGTGCGGGCGGTTGCCTCGAACA
* * * * * * * * * *
2906220 CCATC-AGTAGAAGATGGCCCCTGCTGTGGGCAGTTACGT-GAAAA
1 CCATCGA-CACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * * *
2906264 GCCATCGGCATAAGCT-GGCCCATGGTGTGGGTGGTTGCCTCGAACA
1 -CCATCGACACAAGCTGGGCCC-TGGTGCGGGCGGTTGCCTCGAACA
* ** * * *
2906310 CCATCAACACGTGTTGGGCCTTGGTGCGGGCAGTTGCCTCG-ACTA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAAC-A
* * * * * * *
2906355 CCATCAACAGAAGAT-GGCCCTTGGTACGGGCGATTACCTCGACCA
1 CCATCGACACAAGCTGGGCCC-TGGTGCGGGCGGTTGCCTCGAACA
* * * * * ** * *
2906400 CCATCGGCACAAG-TCGACCCTTAGTGCAGGCTCTTGCCTTGACCA
1 CCATCGACACAAGCTGGGCCC-TGGTGCGGGCGGTTGCCTCGAACA
* * * ** * *
2906445 CCATCGATAGAAGAT-GGCCCATGGTGCGGATGGTTACATCGAACA
1 CCATCGACACAAGCTGGGCCC-TGGTGCGGGCGGTTGCCTCGAACA
* * * * * * * *
2906490 CCATTGACACATGCTGGCCCCTAGTGCTGGCGATTACCTCAAACA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
** ** * * *
2906535 CCATCGGTATGTA-CTGGGCCTTGGTGCGGGCGGTTACCTCGAGCA
1 CCATCGACA-CAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* ** * *
2906580 CCATCGGCACAAGCT-GGCCCTTGGTATGGGCAGTTACCTCGAACA
1 CCATCGACACAAGCTGGGCCC-TGGTGCGGGCGGTTGCCTCGAACA
* ** ** * * * * *
2906625 CCATTGGTACGTGTTGGGCCTTGGTGCGAGCGGTTACCTCGACCA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * ** *
2906670 CCATCGACACAAGC-CGGCCCTTAGTGCGGGCTCTTGCCTCGACCA
1 CCATCGACACAAGCTGGGCCC-TGGTGCGGGCGGTTGCCTCGAACA
* * * * * **
2906715 CCATCGACAGAAGATGGCCCCTGGTACGGGCGATTGTATCGAACA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * * * * * * * *
2906760 CCATAGGCACATGCCGAGCCTTGGTGCGGACGGTTGCCGCAAACA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
2906805 CCATCGACACA
1 CCATCGACACA
2906816 TGCCGGGCAT
Statistics
Matches: 846, Mismatches: 299, Indels: 72
0.70 0.25 0.06
Matches are distributed among these distances:
44 41 0.05
45 764 0.90
46 41 0.05
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (45 bp):
CCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACA
Found at i:2913954 original size:171 final size:170
Alignment explanation
Indices: 2913683--2914145 Score: 465
Period size: 171 Copynumber: 2.7 Consensus size: 170
2913673 CATAATGCGT
* * * * *** * **
2913683 AAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTACCGGTCCTGCTGTCACA
1 AAGCCAGGGATCGACCC-GACCCCCTCTACGTGCTGCCGATCCCACTGTGGGTCTTGCTACCACA
* * * * * *
2913748 ACCCTCGGTTCGGCTAGGGT-TTAGACATT--GAATGAACTCCGTATGCCCAAGCCAACCCACAA
65 ACCCTCGATCCGG-TATGATCTTAG--ATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAA
* * * * *
2913810 AATGAGCATGCGGGTGCTC-AGTCGGTCGGAGAGGCAGAATGCAC
127 AATGAGCATGCGGGCGCTCAACT-GGCCAGAGAGGCAGAATACAC
**
2913854 AAGCCAGGGATCGACCCGATCCCCC-CTACGTG-TGCCGATCCTGCTGCT-GGTCTTGCTACCAC
1 AAGCCAGGGATCGACCCGA-CCCCCTCTACGTGCTGCCGATCCCACTG-TGGGTCTTGCTACCAC
*
2913916 AACCCTCGATCTGGTCCAT-ATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
64 AACCCTCGATCCGGT--ATGAT-CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
* * *
2913980 AAATGAGCGTGCGGGCGCTCAACTTGCCAGAGAGGCAGAATACGC
126 AAATGAGCATGCGGGCGCTCAACTGGCCAGAGAGGCAGAATACAC
* * * * *
2914025 AAGCCAGGGATCGACCCGACCCCCTTTGCGTGCTGTCGATCCCACTGTGGGTCTTGCTGCCGCAA
1 AAGCCAGGGATCGACCCGACCCCCTCTACGTGCTGCCGATCCCACTGTGGGTCTTGCTACCACAA
* * *
2914090 CCCTCGGTCCGGTTTGATCTTAGATTGGCAATGAACTCCGTATGCCTAAGTCAACC
66 CCCTCGATCCGGTATGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACC
2914146 TATGAAACAA
Statistics
Matches: 244, Mismatches: 35, Indels: 27
0.80 0.11 0.09
Matches are distributed among these distances:
168 1 0.00
169 37 0.15
170 52 0.21
171 116 0.48
172 38 0.16
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.21
Consensus pattern (170 bp):
AAGCCAGGGATCGACCCGACCCCCTCTACGTGCTGCCGATCCCACTGTGGGTCTTGCTACCACAA
CCCTCGATCCGGTATGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATG
AGCATGCGGGCGCTCAACTGGCCAGAGAGGCAGAATACAC
Found at i:2914181 original size:170 final size:170
Alignment explanation
Indices: 2913660--2914208 Score: 391
Period size: 171 Copynumber: 3.2 Consensus size: 170
2913650 GGGTGCTGAG
* * * ** * * *
2913660 CCGGCCAGTGAGGCATAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATC
1 CCGGCCAGAGAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCC-CTACGTG-TGCCGATC
* * * * ** * * * *
2913725 CCGCTACCGGTCCTGCTGTCACAACCCTCGGTTCGG-C-TAGGGTTTAGACATT-G-AATGAACT
64 CCACTGCTGGTCTTGCTACCACAACCCTCGATCCGGTCATA-TGCTTAG--ATTGGCAATGAACT
* * ** * ** ** *
2913786 CCGTATGCCCAAGCCAACCCACAAAATGAGCATGCGGGTGCTCAG
126 CCGTATGCCTAAGTCAACCCACAAAACAAACGGGCGGGCACTCAA
* * * * *
2913831 TCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTACGTGTGCCGATCCT
1 CCGGCCAGAGAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCCCTACGTGTGCCGATCCC
* * *
2913896 GCTGCTGGTCTTGCTACCACAACCCTCGATCTGGTCCATATGCTTAGATTGGGAATGAACTCCGT
66 ACTGCTGGTCTTGCTACCACAACCCTCGATCCGGT-CATATGCTTAGATTGGCAATGAACTCCGT
** * * *
2913961 ATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAA
130 ATGCCTAAGTCAACCCACAAAACAAACGGGCGGGCACTCAA
** * * * *
2914002 CTTGCCAGAGAGGCAGAATACGCAAGCCAGGGATCGACCCGA-CCCCCTTTGCGTGCTGTCGATC
1 CCGGCCAGAGAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCC-CTACGTG-TGCCGATC
* * * *
2914066 CCACTG-TGGGTCTTGCTGCCGCAACCCTCGGTCCGGT-TTGAT-CTTAGATTGGCAATGAACTC
64 CCACTGCT-GGTCTTGCTACCACAACCCTCGATCCGGTCAT-ATGCTTAGATTGGCAATGAACTC
* ** * *
2914128 CGTATGCCTAAGTCAACCTATGAAACAAACGGGCGGGTACT-ACG
127 CGTATGCCTAAGTCAACCCACAAAACAAACGGGCGGGCACTCA-A
*
2914172 CCGGCCAGAGAGGC-GAGATGCACAAGCC-GTGGATCGA
1 CCGGCCAGAGAGGCAGA-ATACACAAGCCAG-GGATCGA
2914209 TCGGGTGGTA
Statistics
Matches: 308, Mismatches: 58, Indels: 25
0.79 0.15 0.06
Matches are distributed among these distances:
169 41 0.13
170 93 0.30
171 136 0.44
172 38 0.12
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (170 bp):
CCGGCCAGAGAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCCCTACGTGTGCCGATCCC
ACTGCTGGTCTTGCTACCACAACCCTCGATCCGGTCATATGCTTAGATTGGCAATGAACTCCGTA
TGCCTAAGTCAACCCACAAAACAAACGGGCGGGCACTCAA
Found at i:2914313 original size:12 final size:12
Alignment explanation
Indices: 2914296--2914320 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2914286 CAATGGTCTA
2914296 AGAATTAGGGTG
1 AGAATTAGGGTG
2914308 AGAATTAGGGTG
1 AGAATTAGGGTG
2914320 A
1 A
2914321 AAGCGTGGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.40, T:0.24
Consensus pattern (12 bp):
AGAATTAGGGTG
Found at i:2915553 original size:26 final size:26
Alignment explanation
Indices: 2915515--2915567 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2915505 TCGGTCTGAT
2915515 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
2915541 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
2915567 C
1 C
2915568 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2920506 original size:21 final size:21
Alignment explanation
Indices: 2920482--2920546 Score: 69
Period size: 25 Copynumber: 2.9 Consensus size: 21
2920472 TATGGGTGAG
2920482 AGACTGTGAAACTACGAATTC
1 AGACTGTGAAACTACGAATTC
*
2920503 AGACTGTGTAAGTA-TGAACTAATTC
1 AGACTGTG-AA--ACT--ACGAATTC
2920528 AGACTGTGAAACTACGAAT
1 AGACTGTGAAACTACGAAT
2920547 GACTCATTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
21 13 0.36
22 3 0.08
23 2 0.06
24 3 0.08
25 15 0.42
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.26
Consensus pattern (21 bp):
AGACTGTGAAACTACGAATTC
Found at i:2923198 original size:19 final size:19
Alignment explanation
Indices: 2923174--2923213 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
2923164 TATCACACCA
2923174 CGAGGTACTGTCCGTGAGT
1 CGAGGTACTGTCCGTGAGT
2923193 CGAGGTACTGTCCGTGAGT
1 CGAGGTACTGTCCGTGAGT
2923212 CG
1 CG
2923214 GGTTGTTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.23, G:0.38, T:0.25
Consensus pattern (19 bp):
CGAGGTACTGTCCGTGAGT
Found at i:2924664 original size:26 final size:26
Alignment explanation
Indices: 2924635--2924687 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2924625 GTTGACTTAG
*
2924635 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2924661 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2924687 G
1 G
2924688 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2925518 original size:26 final size:26
Alignment explanation
Indices: 2925482--2925534 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2925472 GTCAACTTAG
*
2925482 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2925508 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2925534 G
1 G
2925535 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2926412 original size:26 final size:26
Alignment explanation
Indices: 2926383--2926455 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
2926373 TTAGGTATTC
2926383 GGAGTTCATTCCCAGTGTAAGCATAT
1 GGAGTTCATTCCCAGTGTAAGCATAT
*
2926409 GGAGTTTATTCCCAGTGTAAGCATAT
1 GGAGTTCATTCCCAGTGTAAGCATAT
2926435 GGAGTTCATTCCCAGTGTAAG
1 GGAGTTCATTCCCAGTGTAAG
2926456 ATCAGACTGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (26 bp):
GGAGTTCATTCCCAGTGTAAGCATAT
Found at i:2927335 original size:26 final size:26
Alignment explanation
Indices: 2927296--2927348 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2927286 GTTGACTTAG
*
2927296 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCAGTCCCAGTCTAA
* *
2927322 GCATATGGATTTCAGTCCCAGTGTAA
1 GCATATGGAGTTCAGTCCCAGTCTAA
2927348 G
1 G
2927349 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCAGTCCCAGTCTAA
Found at i:2929245 original size:26 final size:26
Alignment explanation
Indices: 2929216--2929268 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2929206 GTTGACTTAG
2929216 GCATACGGAGTCGATTCCCAGTCTAA
1 GCATACGGAGTCGATTCCCAGTCTAA
* * *
2929242 GCATATGGAGTTGATTCCCAGTGTAA
1 GCATACGGAGTCGATTCCCAGTCTAA
2929268 G
1 G
2929269 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCGATTCCCAGTCTAA
Found at i:2930141 original size:26 final size:26
Alignment explanation
Indices: 2930105--2930157 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2930095 GTTGACTTAG
2930105 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2930131 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2930157 G
1 G
2930158 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2930786 original size:899 final size:894
Alignment explanation
Indices: 2928537--2934560 Score: 6953
Period size: 899 Copynumber: 6.7 Consensus size: 894
2928527 GACCTTATAT
* * *
2928537 TGCGATGGGTTCTGATACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTTGAGAACTC
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
2928602 ACACCCCCTTAAAAAGAATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAATGTGTCTAAA
65 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
* *
2928667 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTCTTT
129 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
2928732 TATGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTG-AA
194 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
2928796 AAATTTTTAAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCG
259 AAATTTTT-AAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCA
*
2928861 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAAT
323 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
2928926 GTTATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGC
388 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
2928991 TTGCGCATCCCACCTCTCTGGCCGACATAGTGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
453 TTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* **
2929056 GGTATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTATGGTAGCAGGATCGGC
518 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGC
* * * * ** * *
2929121 AGCACGCTGGAGGGGACCCGGCCGATCCCTGGCTTATGCATCCTGCCCCTCTGGTCGGCTGAGCG
583 AGCACGCAGG-GGGGA-CCAGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCA
* * * *
2929186 CCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAG-TCGATTCCCAGTCTAAGCATATGG
646 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC-ATTCCCAGTCTAAGCATACGG
* * * * *
2929250 AGTTGATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTGTGAGTGCACATGCTGGGCTCGAGCA
710 AGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCG-GCA
* ** * * * * *
2929315 TGTGCTGGTGCCGTATTTTTTTTCGCCCGAGCCACCATCTTCGGAGGATCACCGGAGAACTTGAC
774 TGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGTACCATCGTCAGAGCATCGCCGGAGAACCTGAC
* * * *
2929380 CGACCGCATTGGGGTTC--CGA-TGA-----T-TGGGGGGGTGTGCACACAAGATG
839 CGACGGCATTGGGGTTCGGCGATTGAGGGGGTGAGGGGGGGTGTGCCCACATGATG
* * * *
2929427 TGCAATGGGTGCTGGTACTTGCCCCTTATATTGGCCCCCTATCCCCCATCAAACCTTGAGAACTC
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
2929492 ACACCCTCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTACCAGCAGCCATTAATGTGTCTAAA
65 ACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
* *
2929557 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT-AATTTTTT
129 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
2929621 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
194 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * * * **
2929686 AAATTTTAAAAAAATCTTGAACCGTCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGT
259 AAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCAT
* * *
2929751 CTTGACATCAAACTTCACATGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATG
324 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
2929816 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCAATCCACGGCT
389 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
2929881 TACGCATCTCGGCTCTCTGGCCGGCATAGTGCCCGCCCACCCACTCGTTTCGTCGGTTGGCTTAG
454 TGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
2929946 GCATACGAAATTCATTCCCAGTCTAAGATCAGACCGGACTGATGGTTGTGGCAGCAGGATCGGCA
519 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCA
* * * *
2930011 GCACACAGGGGGGGACCTAGTTGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCAC
584 GCACGCA-GGGGGGACC-AGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCAC
* * *
2930076 CCGTACGCTCGCTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAG
647 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
2930141 TTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATG
712 TTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC-GGCATG
* * *
2930206 TGCTGGTGCCGCATTTTTTTTTGCCC-AGGGTACCATCATCGGAGCATCGCCGGAGAACCTGACC
776 TGCTGGTGCCGCATTTTTTTTCGCCCGA-GGTACCATCGTCAGAGCATCGCCGGAGAACCTGACC
2930270 GACGGCATTGGGGTTCTGGCGATTGAGGGGGTGAGGGGGGGTGTGCCCACATGATG
840 GACGGCATTGGGGTTC-GGCGATTGAGGGGGTGAGGGGGGGTGTGCCCACATGATG
** *
2930326 TGCGATGGGTATTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTTA
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
2930391 GACACCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
66 CAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
* *
2930456 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTT
130 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
2930521 ATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
195 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* ** * * *
2930586 AATTTTTAAAAAATCCCGAATTGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTC
260 AATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATC
* * * *
2930651 TTGCCATGAAACTTTACATGAGGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAGAATGG
325 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
2930716 CATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
390 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
2930781 ACGCATCCCGCCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
455 GCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** * * *
2930846 CATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACTGAGGGTTGCAGTAGTAGGATCGGCAG
520 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAG
** * * * * * **
2930911 CATACAGAGGGGGACCCGACCTATCCCCGGCTTGTGCATCCTGCCCCTCTGGTCGATTGAGCACC
585 CACGCAG-GGGGGACCAG-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACC
* * * * *
2930976 CACACTCTCATTTCGTGGGTTGACTTAGGCATACA-ATGTTCATTCCCAATCTAAGCATATGGAG
648 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA-GTTCATTCCCAGTCTAAGCATACGGAG
* *
2931040 TTCATTCCCAGTGTAAGATTGGACC-GAACCGAGGGTTGCGGGTGCATATGCTGGGCTCGAGCAT
712 TTCATTCCCAGTGTAAGATCGGACCAG-ACCGAGGGTTGCGGGTGCACATGCTGGGCTCG-GCAT
* * * * *
2931104 GTGCTGGTGCCGTA-TTTTTTTCGCCCGAGGCACCATCGTCAGAGAATCACCGGAGCACCTGACC
775 GTGCTGGTGCCGCATTTTTTTTCGCCCGAGGTACCATCGTCAGAGCATCGCCGGAGAACCTGACC
* * *
2931168 GACGGCATTGGGATTCTGACAATT-AGGGGGT--------GTGTG--CACATGATG
840 GACGGCATTGGGGTTC-GGCGATTGAGGGGGTGAGGGGGGGTGTGCCCACATGATG
* * * * *
2931213 TGTGGTGGCTGCTGGTACTTGGCCCTTATATTGTCTCCCTATCCCTCATCAAACCTTGAGAACTC
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTC
* * *
2931278 ACACCCACTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
65 ACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
* *
2931343 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTATAGTTTC-AGTTTTTAGCTGAATTTTT
129 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA-CTTCGAGTTTTTAGCTGAATTTTT
* * * *
2931407 TTGTGCATGCCAACAAAAATACAA-GACCATGTCTACCAAGTTTAGGGCCAAAACTCCTTCTAAA
193 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * * * * *
2931471 AAAATTTTAAAAAAATC-CTAAATCGTAAAAAGTTTTAAAAATCGTTAAAAATAAAAAATGAGTC
258 AAAATTTTTAAAAAATCTC-GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
2931535 ATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
322 ATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
2931600 TGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCG-TCCACG
387 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT-CGATCCACG
* ** * * * *
2931664 GCTTGCACATCCCGCCTCTCTGGCCAACGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGATTGCCT
451 GCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
2931729 AAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TCAAGGGTTGCAGAAGCAGGATA
516 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGTAGCAGGATC
* * * * * *
2931793 GACAGAACGCATGGGGGGAGCTGATCGAACCCCCGGCTTGCACATCCTGCCCCTCTGGCCGGCTG
580 GGCAGCACGCA-GGGGGGACCAG-TCG-ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * *
2931858 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTTCCAGTCTAAGCATA
642 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
* * ** ** * * *
2931923 CAGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGAGTTATGCATGCACAGGCTAGGCTTGG
707 CGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGC-TCG
* * * * * * * *
2931988 GCATGTGCTGGTGCCGCGTTTTTTTTCGCTCGGGGTACCATTGCCTGAGCATTGCTGGAGAACCT
771 GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGTACCATCGTCAGAGCATCGCCGGAGAACCT
* * * * *
2932053 GACCGACGGCATTGGGGGTCCGACGATCG-GGGGG-GCGGGGGGTGTGTGCGCACATGATG
836 GACCGACGGCATT-GGGGTTCGGCGATTGAGGGGGTGAGGGGGG-GTGTGCCCACATGATG
* * * * *
2932112 TGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATGCCTCATCAAACCTCAAGAATTG
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
2932177 ACACCCCTTTAAAAAGCATTTGACATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
65 ACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
* * *
2932242 ATGGGGACA-TATTTTTCAAATGGCCACAAAATCCTGTACGCTTCGAGTTTTTAGCTGAAATTTT
129 ATGGGGACACT-TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
2932306 TTGTGCATGCCAACAAAAATACAAGGATCACATCTA-CAATGTTTGGGGCCAAAACTGCTTCTG-
193 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCTGA
* * ** * * *
2932369 AAAAATTTTTCAAAAATCTCGAACCGTAAAAAGTTTAAAAAATTATAAAAAATAAAAAACGAGTT
257 AAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* *
2932434 ACCTTGCAATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
322 ATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
2932499 TGGCATTGGCATGGCA-AAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGG
387 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** *
2932563 CTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTAATCGATTGGCTT
452 CTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
2932628 AGGCATAC-AGAGTTCATTCCCAGTATAAGATCAGACCAGA-TAGAGGGTTGCAGCAGCAAGATC
517 AGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGTAGCAGGATC
* * * *
2932691 GGCAGCACACAGGGGGGACCCA-ACTGATCCTCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGA
580 GGCAGCACGCAGGGGGGA-CCAGTC-GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
** *
2932755 GCACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
643 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
* * **
2932820 GGAGTT--TT--C------AGA-C---CGA-ACTGAGGGTTATGGGTGCACATGCTGGGCTCGGG
708 GGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC-GG
* * * * *
2932870 CATGTGCTGGTGCCGCATTTTTTTTTGCCCGAGGTACCCTCGCCAGAGCCTCGTCGGAGAACCTG
772 CATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGTACCATCGTCAGAGCATCGCCGGAGAACCTG
* * * * * *
2932935 ACCGGCGGTATTGGGGTTCCAGCGATTGAGGGGGGGGGGGGGGGGGGGTGTGCGCACATGATG
837 ACCGACGGCATTGGGGTT-CGGCGATTGA----GGGGGTGAGGGGGGGTGTGCCCACATGATG
* * * **
2932998 TGCGATAGGTGTTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGTTAACTC
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
*
2933063 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
65 ACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
* * *
2933128 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGC-GAAATTTTT
129 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG-AATTTTT
* * * **
2933192 TTGTGCATGCCAACCAAAATAAAAGGATCACGACTACCAAGTTTTTTGGCCAAAACTCCTTCTGA
193 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCTGA
* *
2933257 AAAAATTTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAAGT
257 AAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACG-AGT
2933321 CATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
321 CATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*** * *
2933386 ATGGCATTGGCACAACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCACTATTCGCTCC
386 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CC-CTA-TCGATCC
* * * *
2933451 ACGACTTGGCGCAT-CCGTCCTCTCTGGCTGGCATAGTGCCCCGGCCCGTCCGCTCGTTTCATCG
448 ACGGCTT-GCGCATCCCG-CCTCTCTGGCCGGCATAGTG-CCC-GCCCGCCCGCTCGTTTCGTCG
* * * *
2933515 GTTTGGCTTAGGCATAAGGATGTTTCATTCCCAGTCCTAAGATCGGACCCAGACCGAGGGTCTGG
509 G-TTGGCTTAGGCAT-ACGAAG-TTCATTCCCAGT-CTAAGATCAGA-CCAGACTGAGGGT-T-G
* * * * * * ** * *
2933580 CGAATAGTAGGATCGAGTAGCACGTAGGGGAGACCCGATCGAT-CCATGCTTTCGTATCCTGCCC
567 CG-GTAGCAGGATCG-GCAGCACGCAGGGGGGACCAG-TCGATCCCCGGCTTGCGCATCCTGCCC
* * * *
2933644 CTCTGGCCGGTTGAGC-CGCCGCAC-C-CATTTTGTGGGTTGACTT-GGCATACAGAG-TCATTT
629 CTCTGGCCGGCTGAGCAC-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
* * * * * *
2933704 CCA-TC-ACAGCATACGAAGTTTATTCCCAGTGTAAGGATCGAATCGGACTGA-GGTTGCGGGTG
693 CCAGTCTA-AGCATACGGAGTTCATTCCCAGTGTAA-GATCGGACCAGACCGAGGGTTGCGGGTG
** ** *
2933766 CACATTGCTGGGCTAAGCATGTGCTGGTGCCATATTTTTTTTTC-ACCG-GG---CA----CA-A
756 CACA-TGCTGGGCTCGGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGAGGTACCATCGTCAGA
* * * * *
2933821 ACATCGTC-GATGAA-CTGACCGACGGCATTAGGGTTCGGTGATT--GGGGG-GACGGTGGGGTG
819 GCATCGCCGGA-GAACCTGACCGACGGCATTGGGGTTCGGCGATTGAGGGGGTGA-GGGGGGGTG
2933881 TGCCCACATGATG
882 TGCCCACATGATG
* *
2933894 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCCTCAATCAAACCTCAAGAACT
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTAT-CCCTC-ATCAAACCTCGAGAACT
* * *
2933959 CACACCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTCTCCAGTAGCCATTAATAGTGACTG
64 CACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-ACCAGTAGCCATTAA-AGTGTCTG
* * *
2934024 AACTGTATGCGGGACCACTTTTTCCAAAAT-GTCACAAAACCCGTGTAC-GTCTCGAGTTTTTAG
127 AA----ATG-GGGA-CACTTTTTTC-AAATGGTCACAAAATCC-TGTACACT-TCGAGTTTTTAG
* * * * * * * *
2934087 CCGAA-TGTTTTGTGCAT-CCAAAAAAAATACAAGAATCACATCGTGCCTA-TTTGGGGGGCAAA
183 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-TACCAAGTTT--GGGGCCAA
* * *
2934149 TTATACTCCTTCTG-AAAAATATTTCAGAAGAAATCTCGAACCGTTAAAAAATTTTGAAAATCCG
245 --A-ACTCCTTCTGAAAAAAT-TTTTA-AA-AAATCTCGAACCG-TAAAAAGTTTTAAAAAT-CG
2934213 TGAAAAATAG-AAAC-AGTCATCTTGCCAACTGAAACTCTCACATGAAAGGCTTATCAGGGACCA
302 TGAAAAATAGAAAACGAGTCATCTTGCC-A-TGAAACT-TCACATG-AAGGCTTA--AGGGACCA
*** *
2934276 CTTGTGATGAATTTACAAGCCATAACAAATGGCATTGGCAACAACAGAAATTTGAAGATGTGCCT
361 -TTGT-ATGAATTTACAAGCCATAA-AAATGGCATTGGC-ATGGCAGAAATATGAAGATGTGCCT
* * * *
2934341 AAACCCACCTACCATCCTAACGATGCACGGCTTGCGCATTCCTCGCCTGCTCTAGGCCAGGCGTT
422 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA-TCC-CGCCT-CTCT-GGCC-GGC-AT
* * * * * * *
2934406 AGTGCCTGCCCGCCCGCTCATCGTTCATCGGATGGCTTAGGCATATGGAGTTCATCTCCCAATC-
481 AGTGCCCGCCCGCCCGCTCGT--TTCGTCGGTTGGCTTAGGCATACGAAGTTCAT-TCCCAGTCT
* * * *
2934470 CAGATCAGACCAGACCGA-GGTTACGGTAGCAGGATCGGCAGCAACGCAGGGGGGACCGGTCGAT
543 AAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGC-ACGCAGGGGGGACCAGTCGAT
* *
2934534 -CCCAGCTTACGCATCCTGCCCCTCTGG
607 CCCCGGCTTGCGCATCCTGCCCCTCTGG
2934561 TCGACNNNNN
Statistics
Matches: 4442, Mismatches: 525, Indels: 313
0.84 0.10 0.06
Matches are distributed among these distances:
880 6 0.00
881 95 0.02
882 2 0.00
885 3 0.00
886 228 0.05
887 411 0.09
888 451 0.10
889 685 0.15
890 190 0.04
891 5 0.00
892 19 0.00
893 26 0.01
894 5 0.00
895 27 0.01
896 203 0.05
897 61 0.01
898 410 0.09
899 938 0.21
900 54 0.01
901 17 0.00
902 17 0.00
903 89 0.02
904 66 0.01
905 25 0.01
906 8 0.00
907 14 0.00
908 3 0.00
909 27 0.01
910 19 0.00
911 51 0.01
912 32 0.01
913 42 0.01
914 23 0.01
915 16 0.00
916 24 0.01
917 33 0.01
918 26 0.01
919 61 0.01
920 17 0.00
921 13 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (894 bp):
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
ATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCT
TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGC
ACGCAGGGGGGACCAGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGCATGTGCTG
GTGCCGCATTTTTTTTCGCCCGAGGTACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGGC
ATTGGGGTTCGGCGATTGAGGGGGTGAGGGGGGGTGTGCCCACATGATG
Found at i:2931928 original size:26 final size:26
Alignment explanation
Indices: 2931892--2931944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2931882 GTTGACTTAG
* *
2931892 GCATATAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2931918 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2931944 G
1 G
2931945 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2936164 original size:45 final size:45
Alignment explanation
Indices: 2936113--2936217 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 45
2936103 GGGTGAATAG
* * * *
2936113 GTGCCGATGGTGGTTGGGGC-ATGTGCCTGCACCAAGGGCCAGCAC
1 GTGCCGATGGTGGTCGAGGCGA-CTGCCCGCACCAAGGGCCAGCAC
* * * **
2936158 GTGCCGATGCTGGTCGATGCGACTGCCCGTACCAAGGGCCAGCGT
1 GTGCCGATGGTGGTCGAGGCGACTGCCCGCACCAAGGGCCAGCAC
2936203 GTGCCGATGGTGGTC
1 GTGCCGATGGTGGTC
2936218 AAGGAAATTG
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
45 48 0.98
46 1 0.02
ACGTcount: A:0.14, C:0.28, G:0.39, T:0.19
Consensus pattern (45 bp):
GTGCCGATGGTGGTCGAGGCGACTGCCCGCACCAAGGGCCAGCAC
Found at i:2936235 original size:45 final size:45
Alignment explanation
Indices: 2936136--2936236 Score: 112
Period size: 45 Copynumber: 2.2 Consensus size: 45
2936126 TTGGGGCATG
* * * **
2936136 TGCCTGCACCAAGGGCCAGCACGTGCCGATGCTGGTCGATGCGAC
1 TGCCTGTACCAAGGGCCAGCACGTGCCGATGCTGGTCAAGGAAAC
* ** * *
2936181 TGCCCGTACCAAGGGCCAGCGTGTGCCGATGGTGGTCAAGGAAAT
1 TGCCTGTACCAAGGGCCAGCACGTGCCGATGCTGGTCAAGGAAAC
2936226 TGCCTGTACCA
1 TGCCTGTACCA
2936237 GCTCGAGGCA
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.18
Consensus pattern (45 bp):
TGCCTGTACCAAGGGCCAGCACGTGCCGATGCTGGTCAAGGAAAC
Found at i:2936346 original size:45 final size:45
Alignment explanation
Indices: 2936267--2936866 Score: 405
Period size: 45 Copynumber: 13.3 Consensus size: 45
2936257 CCAATGCCCG
* * * ** * *
2936267 GCATGTGTCGATGGTGTTTGAGGTAACCATCCGCACCAAGGCCCG
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
* ** * *
2936312 GCATGTGCCTATGGTGTTCGACACAATCGCCCGCACCAGGGGCCA
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * * * ** *
2936357 TCTTCTGTCGATGGTGGTCGAGGCAAGAGCCCGCACTAAGGGCC-
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * *
2936401 GACTTGTGCCGATGGTGGTCGAGGTAACCGCCCGCACCAAGGCCCA
1 G-CATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * * * * *
2936447 ACACGTACCGATGGTGTTTGAGGTAACTGCCCGTACCAAGGGCCA
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
* * *
2936492 GCTTATGCCGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCA
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * * * *
2936537 TCTTCTGCTGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCA
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
** * * *
2936582 GCACATGCCGATGGTGTTCGAGGCAATCGCCCCGCACTAGGGGCCA
1 GCATGTGCCGATGGTGTTCGAGGCAACCG-CCCGCACCAAGGGCCA
* * ** *
2936628 GCATGTGTCAATGGTGTTCGACCCAACCGCCCGCACCATGGGCCA
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * ** * ** * *
2936673 TCTTCTATCGATGGTGGTCGAGGCAAGAGCCTGCACCAAGGGTC-
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * * * *
2936717 GACTTGTGTCGATGGTGGTCGAGGCAATCACCCGTACCAAGGGCCA
1 G-CATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * *** * * *
2936763 TCTTCTATTGATGGTAG-TCGAGGCAACTGCCTGCACCAAGGCCCA
1 GCATGTGCCGATGGT-GTTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * * *
2936808 ACACGTGTCGATGGTGTTCGAGGCAACCACCCGCACCACGGGCCA
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
* *
2936853 GCTTATGCCGATGG
1 GCATGTGCCGATGG
2936867 CTTTTGACGT
Statistics
Matches: 425, Mismatches: 123, Indels: 14
0.76 0.22 0.02
Matches are distributed among these distances:
44 1 0.00
45 388 0.91
46 36 0.08
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (45 bp):
GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCA
Found at i:2936417 original size:90 final size:90
Alignment explanation
Indices: 2936297--2936971 Score: 399
Period size: 90 Copynumber: 7.5 Consensus size: 90
2936287 AGGTAACCAT
* * * * ** * *
2936297 CCGCACCAAGGCCCGGCATGTGCCTATGGTGTTCGACACAATCGCCCGCACCAGGGGCCATCTTC
1 CCGCACCAAGGCCCGACTTATGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCATCTTC
*
2936362 TGTCGATGGTGGTCGAGGCAAGAGC
66 TGTCGATGGTGGTCGAGGCAACAGC
* * * * * * * *
2936387 CCGCACTAAGGGCCGACTTGTGCCGATGGTGGTCGAGGTAACCGCCCGCACCAAGGCCCAAC-AC
1 CCGCACCAAGGCCCGACTTATGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCATCTTC
* * * *
2936451 -GTACCGATGGTGTTTGAGGTAACTGC
66 TGT--CGATGGTGGTCGAGGCAACAGC
* * *
2936477 CCGTACCAAGGGCC-AGCTTATGCCGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATCTT
1 CCGCACCAAGGCCCGA-CTTATGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCATCTT
*
2936541 CTG-CTGATGGTGGTCGAGGCAACCGC
65 CTGTC-GATGGTGGTCGAGGCAACAGC
* * * *
2936567 CCGCACCAAGGCCCAGCAC--ATGCCGATGGTGTTCGAGGCAATCGCCCCGCACTAGGGGCCAGC
1 CCGCACCAAGGCCC-G-ACTTATGCCGATGGTGTTCGAGGCAACCG-CCCGCACCAAGGGCCATC
* * * * ** *
2936630 ATGTGTCAATGGTGTTCGACCCAACCGC
63 TTCTGTCGATGGTGGTCGAGGCAACAGC
* * * ** * ** * *
2936658 CCGCACCATGGGCC-ATCTTCTATCGATGGTGGTCGAGGCAAGAGCCTGCACCAAGGGTCGA-CT
1 CCGCACCAAGGCCCGA-CTTATGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGG-CCATCT
*
2936721 TGTGTCGATGGTGGTCGAGGCAATCA-C
64 TCTGTCGATGGTGGTCGAGGCAA-CAGC
* * * *** * * * *
2936748 CCGTACCAAGGGCC-ATCTTCTATTGATGGTAG-TCGAGGCAACTGCCTGCACCAAGGCCCAAC-
1 CCGCACCAAGGCCCGA-CTTATGCCGATGGT-GTTCGAGGCAACCGCCCGCACCAAGGGCCATCT
* *
2936810 ACGTGTCGATGGTGTTCGAGGCAACCA-C
64 TC-TGTCGATGGTGGTCGAGGCAA-CAGC
* * * * * * ** *
2936838 CCGCACCACGGGCC-AGCTTATGCCGATGGCT-TTTGACGTAACCACCCGCAGTAGGGGCCATCT
1 CCGCACCAAGGCCCGA-CTTATGCCGATGG-TGTTCGAGGCAACCGCCCGCACCAAGGGCCATCT
* * *
2936901 TCTGTAGATGGTGGACGAGGCAAAAGC
64 TCTGTCGATGGTGGTCGAGGCAACAGC
* * * ** * *
2936928 TCACACCAAGGGCCGACTTATGTTGATGGTGCTCGAGGTAACCG
1 CCGCACCAAGGCCCGACTTATGCCGATGGTGTTCGAGGCAACCG
2936972 TCTACCCCAA
Statistics
Matches: 455, Mismatches: 105, Indels: 50
0.75 0.17 0.08
Matches are distributed among these distances:
88 3 0.01
89 8 0.02
90 366 0.80
91 74 0.16
92 3 0.01
93 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.19
Consensus pattern (90 bp):
CCGCACCAAGGCCCGACTTATGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCATCTTC
TGTCGATGGTGGTCGAGGCAACAGC
Found at i:2936490 original size:135 final size:134
Alignment explanation
Indices: 2936272--2937016 Score: 534
Period size: 135 Copynumber: 5.5 Consensus size: 134
2936262 GCCCGGCATG
* * * ** * * * ***
2936272 TGTCGATGGTGTTTGAGGTAACCATCCGCACCAAGGCCCGGCATGTGCCTATGGTGTTCGACACA
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGTA
* *
2936337 A-TCGCCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAAGAGCCCGCACTAAGGGCC
66 ACT-GCCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC
*
2936401 GACTTG
130 -ACTTC
* * * * *
2936407 TGCCGATGGTGGTCGAGGTAACCGCCCGCACCAAGGCCCAACACGTACCGATGGTGTTTGAGGTA
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGTA
* * * * * * *
2936472 ACTGCCCGTACCAAGGGCCAGCTTATGCCGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCA
66 ACTGCCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCA
2936537 TCTTC
131 -CTTC
* *
2936542 TG-CTGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACATGCCGATGGTGTTCGAGGC
1 TGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGT
* * * * * * ** * *
2936606 AA-TCGCCCCGCACTAGGGGCCAGCATGTGTCAATGGTGTTCGACCCAACCGCCCGCACCATGGG
65 AACT-G-CCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGG
2936670 CCATCTTC
128 CCA-CTTC
* ** * ** * *
2936678 TATCGATGGTGGTCGAGGCAAGAGCCTGCACCAAGGGTC-G-ACTTGTGTCGATGGTGGTCGAGG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCAC--GTGCCGATGGTGTTCGAGG
* * * * * * * * * *
2936741 CAA-TCACCCGTACCAAGGGCCATCTTCTATTGATGGTAGTCGAGGCAACTGCCTGCACCAAGGC
64 TAACT-GCCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGG
*
2936805 CCAAC-AC
128 CC-ACTTC
* * * * *** * *
2936812 GTGTCGATGGTGTTCGAGGCAACCACCCGCACCACGGGCCAGCTTATGCCGATGGCT-TTTGACG
1 -TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACGTGCCGATGG-TGTTCGAGG
** ** * * * * *
2936876 TAACCACCCGCAGTAGGGGCCATCTTCTGTAGATGGTGGACGAGGCAAAAGCTCACACCAAGGGC
64 TAACTGCCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGC
*
2936941 CGACTTA
129 C-ACTTC
* * * * ** * ** *
2936948 TGTTGATGGTGCTCGAGGTAACCGTCTACCCCAAGGCTTAGCACGTGCCGATAGTGTTCGAGGTA
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGTA
2937013 ACTG
66 ACTG
2937017 AAGTCATAAC
Statistics
Matches: 471, Mismatches: 123, Indels: 32
0.75 0.20 0.05
Matches are distributed among these distances:
134 7 0.01
135 352 0.75
136 111 0.24
137 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (134 bp):
TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGTA
ACTGCCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCA
CTTC
Found at i:2941641 original size:26 final size:26
Alignment explanation
Indices: 2941605--2941657 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2941595 CCAGTCTAAT
2941605 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2941631 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2941657 C
1 C
2941658 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2941996 original size:26 final size:26
Alignment explanation
Indices: 2941966--2942025 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
2941956 CTCGGTCTGG
*
2941966 TCCGTAT-ACTAAGACTGGGAAAGAAA
1 TCCGTATGA-TAAGACTAGGAAAGAAA
* * *
2941992 TCCGTATGATTAGACTAGGAATGAAC
1 TCCGTATGATAAGACTAGGAAAGAAA
2942018 TCCGTATG
1 TCCGTATG
2942026 CCTAAGTCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (26 bp):
TCCGTATGATAAGACTAGGAAAGAAA
Found at i:2942163 original size:198 final size:198
Alignment explanation
Indices: 2941803--2942165 Score: 439
Period size: 198 Copynumber: 1.8 Consensus size: 198
2941793 CGACTGGGGC
* * * *
2941803 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTACTATGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTATGCC
* * * *
2941868 GGCGGAAGAGGCAGAATGCGCAAGCCAAGGATCGACTCGGTCCCCCCTGCGTGCTACCGATCCTA
66 GCCAGAAGAGGCAGAATGCGCAAGCCAAGGATCGACTCGGACCCCCCTGCGTGCTACCGATCCCA
* *
2941933 TTGCTGGTCCTACTACCACAACCCTCGGTCTGGTCCGTATACTAAGACTGGGAAAGAAATCCGTA
131 CTGCAGGTCCTACTACCACAACCCTCGGTCTGGTCCGTATACTAAGACTGGGAAAGAAATCCGTA
2941998 TGA
196 TGA
* * * *
2942001 TTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTCA-G
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACT-ATG
* * * *
2942064 CCAGCCAG-AGAGGTAGAATGCGCAAGCC-GGGATCGGCTC-GACCTCTCTCTGCGTGCTACCGA
64 CC-GCCAGAAGAGGCAGAATGCGCAAGCCAAGGATCGACTCGGACC-C-CCCTGCGTGCTACCGA
* * ** *
2942126 TCCCGCTGCAGGTCCTGCTACCGTAACCCTTGGTCTGGTC
126 TCCCACTGCAGGTCCTACTACCACAACCCTCGGTCTGGTC
2942166 TAATCTTAGA
Statistics
Matches: 137, Mismatches: 23, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
196 3 0.02
197 11 0.08
198 119 0.87
199 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (198 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTATGCC
GCCAGAAGAGGCAGAATGCGCAAGCCAAGGATCGACTCGGACCCCCCTGCGTGCTACCGATCCCA
CTGCAGGTCCTACTACCACAACCCTCGGTCTGGTCCGTATACTAAGACTGGGAAAGAAATCCGTA
TGA
Found at i:2942921 original size:22 final size:22
Alignment explanation
Indices: 2942891--2942935 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
2942881 ACTTCGACCT
*
2942891 ATGCCTCGACCATCAAT-GGCAC
1 ATGCATCGACCATC-ATCGGCAC
2942913 ATGCATCGACCATCATCGGCAC
1 ATGCATCGACCATCATCGGCAC
2942935 A
1 A
2942936 GGCTACCCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.18
Consensus pattern (22 bp):
ATGCATCGACCATCATCGGCAC
Found at i:2943007 original size:45 final size:45
Alignment explanation
Indices: 2942958--2943640 Score: 429
Period size: 45 Copynumber: 15.2 Consensus size: 45
2942948 ATACGGGCAC
* * * *
2942958 TTGCCTCGATCGCCATCGGCACAAGCTGGGCCCTGGTGCAGACGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * ** *
2943003 TTGCCTCGATCACCATCGACACATG-TCGGCCCTTGGTATGGGCAG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCGG
* * * * * **
2943048 TTGCGTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGTAG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
** * * * * ** * * *
2943093 TTGTGTCGAACGCCATCAGCACATGCTGAGCTATGGTACAGGTGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * * *** *
2943138 TAGCCTCGACCACCATCGGTAAAAGATGAAACCTGGTACGGGCGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * ** *
2943183 TTGCATCGAGCACCATCAGCACATGCTGGGCTTTGGTGCAGGCGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * * *
2943228 TTGCCTCGATCACCATCAGCATAAGAT-GGCCTCTGGTGTGGGTGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCC-CTGGTGCGGGCGG
* * ** *** *
2943273 TTGCCTCAAACACCATCGACACGTGCCAAGCCTTGGTGCGGGCGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * *
2943318 TTGCCTCGAGCACCATCGGCACTAG-TGGGCCCTTGGTGCTGGCGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCGG
* * * ** * *
2943363 TTGTCTCGACCACCATCGACACAAAATGGCCCCTGGTGCGGACGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * *
2943408 TTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTACGGGCAG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * * * **
2943453 TTGCCTCGACCATCATTGACATAAGAT-GGCCTCTGGTGCAAGCGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCC-CTGGTGCGGGCGG
* * *
2943498 TTGCATCGAACACCATCGGCACATGCTGGGCCATGGTGCGGGCGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * * *
2943543 TTGTCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCGGGTGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * * *
2943588 TTGCGTTGAACACCATTGGCACATGCTGGGCCTTAGTGCGGGCGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
2943633 TTGCCTCG
1 TTGCCTCG
2943641 GCCTCTGGTG
Statistics
Matches: 470, Mismatches: 160, Indels: 16
0.73 0.25 0.02
Matches are distributed among these distances:
44 16 0.03
45 436 0.93
46 18 0.04
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
Found at i:2943601 original size:180 final size:180
Alignment explanation
Indices: 2943314--2943640 Score: 478
Period size: 180 Copynumber: 1.8 Consensus size: 180
2943304 CTTGGTGCGG
* * * *
2943314 GCGGTTGCCTCGAGCACCATCGGCACTAGTGGGCCCTTGGTGCTGGCGGTTGTCTCGACCACCAT
1 GCGGTTGCATCGAACACCATCGGCACTAGTGGGCCCATGGTGCGGGCGGTTGTCTCGACCACCAT
* *
2943379 CGACACAAAATGGCCCCTGGTGCGGACGGTTGCATCGAACACCATCGGCACATGCTGGGCCGTGG
66 CGACACAAAATGGCCCCTAGTGCGGACGGTTGCATCGAACACCATCGGCACATGCTGGGCCGTAG
2943444 TACGGGCAGTTGCCTCGACCATCATTGACATAAGATGGCCTCTGGTGCAA
131 TACGGGCAGTTGCCTCGACCATCATTGACATAAGATGGCCTCTGGTGCAA
2943494 GCGGTTGCATCGAACACCATCGGCAC-ATGCTGGG-CCATGGTGCGGGCGGTTGTCTCGACCACC
1 GCGGTTGCATCGAACACCATCGGCACTA-G-TGGGCCCATGGTGCGGGCGGTTGTCTCGACCACC
* * ** * * * *
2943557 ATCGGCACAAGATGGCCCCTAGTGCGGGTGGTTGCGTTGAACACCATTGGCACATGCTGGGCCTT
64 ATCGACACAAAATGGCCCCTAGTGCGGACGGTTGCATCGAACACCATCGGCACATGCTGGGCCGT
* *
2943622 AGTGCGGGCGGTTGCCTCG
129 AGTACGGGCAGTTGCCTCG
2943641 GCCTCTGGTG
Statistics
Matches: 129, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
179 1 0.01
180 124 0.96
181 4 0.03
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.21
Consensus pattern (180 bp):
GCGGTTGCATCGAACACCATCGGCACTAGTGGGCCCATGGTGCGGGCGGTTGTCTCGACCACCAT
CGACACAAAATGGCCCCTAGTGCGGACGGTTGCATCGAACACCATCGGCACATGCTGGGCCGTAG
TACGGGCAGTTGCCTCGACCATCATTGACATAAGATGGCCTCTGGTGCAA
Found at i:2943741 original size:45 final size:45
Alignment explanation
Indices: 2943692--2943995 Score: 205
Period size: 45 Copynumber: 6.8 Consensus size: 45
2943682 GCCAAGCCTG
* * * *
2943692 GGTGCTGGAGGTTGCCTCGACCACCATTGGCACAAGATGGCCCCT
1 GGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGATGGCCCCT
* * * * *
2943737 GGTGCGGGCGGTTGCATCGAACACCATCAGCA-AATGCTGGGCCTT
1 GGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA-GATGGCCCCT
** * * * * *
2943782 GGTGCGGGCGGTTGCCTTAAACACCATCGGTACATGTTGGTCCTT
1 GGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGATGGCCCCT
* * * * ** *
2943827 GGTGCAGGCAGTTGGCTCGACCACCATCGATAGAAGATGGCCCCT
1 GGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGATGGCCCCT
* * * * *** *
2943872 GGTACGGGCGGTTGCCTCGAGCACCATTGGCATAAGCCAGCCCTT
1 GGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGATGGCCCCT
* ** * * * * * *
2943917 GGTGCAGGCTTTTGCCTTGACCACAATCGGTAAAAGGTGGCCCCT
1 GGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGATGGCCCCT
* * *
2943962 GGTGCGGGCAGTTGCGTCGAACACCATTGGCACA
1 GGTGCGGGCGGTTGCCTCGAACACCATCGGCACA
2943996 TGCTGGGCCT
Statistics
Matches: 191, Mismatches: 66, Indels: 4
0.73 0.25 0.02
Matches are distributed among these distances:
44 2 0.01
45 188 0.98
46 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (45 bp):
GGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGATGGCCCCT
Found at i:2943744 original size:160 final size:160
Alignment explanation
Indices: 2943480--2943798 Score: 435
Period size: 160 Copynumber: 2.0 Consensus size: 160
2943470 GACATAAGAT
* * *** *
2943480 GGCCTCTGGTGCAAGCGGTTGCATCGAACACCATCGGCACATGCTGGGCCATGGTGCGGGCGGTT
1 GGCCTCTGGTGCAAGCGATTGCATCGAACACCATCGACACATGCCAAGCCATGGTGCGGGAGGTT
* * * * ** *
2943545 GTCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCGGGTGGTTGCGTTGAACACCATTGGCAC
66 GCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCGGGCGGTTGCATCGAACACCATCAGCAA
2943610 ATGCTGGGCCTTAGTGCGGGCGGTTGCCTC
131 ATGCTGGGCCTTAGTGCGGGCGGTTGCCTC
* * *
2943640 GGCCTCTGGTGC-AGACGATTGCCTCGAACACCATTGACACATGCCAAGCC-TGGGTGCTGGAGG
1 GGCCTCTGGTGCAAG-CGATTGCATCGAACACCATCGACACATGCCAAGCCAT-GGTGCGGGAGG
* *
2943703 TTGCCTCGACCACCATTGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCAGC
64 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCGGGCGGTTGCATCGAACACCATCAGC
*
2943768 AAATGCTGGGCCTTGGTGCGGGCGGTTGCCT
129 AAATGCTGGGCCTTAGTGCGGGCGGTTGCCT
2943799 TAAACACCAT
Statistics
Matches: 138, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
159 3 0.02
160 135 0.98
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (160 bp):
GGCCTCTGGTGCAAGCGATTGCATCGAACACCATCGACACATGCCAAGCCATGGTGCGGGAGGTT
GCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCGGGCGGTTGCATCGAACACCATCAGCAA
ATGCTGGGCCTTAGTGCGGGCGGTTGCCTC
Found at i:2943917 original size:135 final size:135
Alignment explanation
Indices: 2943702--2943988 Score: 308
Period size: 135 Copynumber: 2.1 Consensus size: 135
2943692 GGTGCTGGAG
* * * *
2943702 GTTGCCTCGACCACCATTGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCAG
1 GTTGGCTCGACCACCATCGACACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAACACCATCAG
** * * * * * * * *
2943767 CAAATGCTGGGCCTTGGTGCGGGCGGTTGCCTTAAACACCATCGGTACATGTTGGTCCTTGGTGC
66 CAAATGCCAGCCCTTGGTGCAGGCGGTTGCCTTAAACACAATCGGTAAAAGGTGGCCCCTGGTGC
2943832 AGGCA
131 AGGCA
* * * * **
2943837 GTTGGCTCGACCACCATCGATAGAAGATGGCCCCTGGTACGGGCGGTTGCCTCGAGCACCATTGG
1 GTTGGCTCGACCACCATCGACACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAACACCATCAG
** * *
2943902 CATAA-GCCAGCCCTTGGTGCAGGCTTTTGCCTTGACCACAATCGGTAAAAGGTGGCCCCTGGTG
66 CA-AATGCCAGCCCTTGGTGCAGGCGGTTGCCTTAAACACAATCGGTAAAAGGTGGCCCCTGGTG
*
2943966 CGGGCA
130 CAGGCA
*
2943972 GTT-GCGTCGAACACCAT
1 GTTGGC-TCGACCACCAT
2943989 TGGCACATGC
Statistics
Matches: 124, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
134 2 0.02
135 120 0.97
136 2 0.02
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (135 bp):
GTTGGCTCGACCACCATCGACACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAACACCATCAG
CAAATGCCAGCCCTTGGTGCAGGCGGTTGCCTTAAACACAATCGGTAAAAGGTGGCCCCTGGTGC
AGGCA
Found at i:2955984 original size:45 final size:45
Alignment explanation
Indices: 2955910--2956598 Score: 344
Period size: 45 Copynumber: 15.3 Consensus size: 45
2955900 TGACACTAGG
** * *
2955910 CCTTGGTGCATGCGGTTGCCTCGAGCACCATCGGCACAAGCTGGC
1 CCTTGGTGCGGGCTGTTGCCTCGACCACCATCGGCACAAGCTGGC
* * * * *
2955955 CCTTAGTGCGGGCTCTTGCCTCGACCACCATCGACAGAAGATGGC
1 CCTTGGTGCGGGCTGTTGCCTCGACCACCATCGGCACAAGCTGGC
** * * * * * *
2956000 CCTTGGTATGGGCAGTTACATCGAACACCATCAGCACATGCTGGC
1 CCTTGGTGCGGGCTGTTGCCTCGACCACCATCGGCACAAGCTGGC
* * * * ** *
2956045 CCCTGGTACGGG-TGGTTGCCTCGAACACTATCGGCACGTGCTGGG
1 CCTTGGTGCGGGCT-GTTGCCTCGACCACCATCGGCACAAGCTGGC
* * * *
2956090 CCTTGGTGCTGG-TAGTTGCCTCGACCACCATCGGTAAAAGATGGC
1 CCTTGGTGCGGGCT-GTTGCCTCGACCACCATCGGCACAAGCTGGC
* * * * * *
2956135 CCTTGGTATG-GGGCGGTTACCTCGATCACCATCAGCATAAG-TCGAC
1 CCTTGG--TGCGGGCTGTTGCCTCGACCACCATCGGCACAAGCT-GGC
* * * * * *
2956181 CTTTGGTGCGGGCTCTTGCCTCGACCACCGTCGGTAGAAGATGGC
1 CCTTGGTGCGGGCTGTTGCCTCGACCACCATCGGCACAAGCTGGC
* * * *
2956226 CAC-TGGTGCGGAC-GATTGCGTCGAACACCATCGGCACATGCTGG-
1 C-CTTGGTGCGGGCTG-TTGCCTCGACCACCATCGGCACAAGCTGGC
* ** * * * ** *
2956270 CTTCTGGTGAAGGCGGTTGCCTCGAACACCATCGGTACGTGCTGGG
1 CCT-TGGTGCGGGCTGTTGCCTCGACCACCATCGGCACAAGCTGGC
* * * * **
2956316 CCTTGGTGTGGGC-GATTGCCTCGACCACCATCGGTAGAAGATCAC
1 CCTTGGTGCGGGCTG-TTGCCTCGACCACCATCGGCACAAGCTGGC
* * * *** * *** *
2956361 CCTTGGTGCAGG-TGGTTACCTCAAATGCCACCGGCATGTGCTGGG
1 CCTTGGTGCGGGCT-GTTGCCTCGACCACCATCGGCACAAGCTGGC
* * * *
2956406 CTTTGGTGCGGGCGGTTGCCTCGACCACCATCGGCAGAAGATGGC
1 CCTTGGTGCGGGCTGTTGCCTCGACCACCATCGGCACAAGCTGGC
* * *
2956451 CCTTGGTGCGGAC-GTTGCCTCGACCACTATCGACACAAG-TCGGC
1 CCTTGGTGCGGGCTGTTGCCTCGACCACCATCGGCACAAGCT-GGC
* * * * * * *
2956495 CCTTGGTGCGAGCTCTTGCCTTGACCAACATTGAG-AAAAGATGGC
1 CCTTGGTGCGGGCTGTTGCCTCGACCACCATCG-GCACAAGCTGGC
* * * * * *
2956540 CCTTGGTGTGGGCGGTTGCATCAAACACCATCGGCACATG-TCGAG-
1 CCTTGGTGCGGGCTGTTGCCTCGACCACCATCGGCACAAGCT-G-GC
2956585 CCTTGGTGCGGGCT
1 CCTTGGTGCGGGCT
2956599 ATTACCTCAA
Statistics
Matches: 473, Mismatches: 147, Indels: 48
0.71 0.22 0.07
Matches are distributed among these distances:
43 1 0.00
44 43 0.09
45 390 0.82
46 37 0.08
47 2 0.00
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (45 bp):
CCTTGGTGCGGGCTGTTGCCTCGACCACCATCGGCACAAGCTGGC
Found at i:2956617 original size:90 final size:89
Alignment explanation
Indices: 2956443--2956617 Score: 190
Period size: 90 Copynumber: 2.0 Consensus size: 89
2956433 CCATCGGCAG
* * * *
2956443 AAGATGGCCCTTGGTGCGGACGTTGCCTCGACCACTATCGACACAAGTCGGCCCTTGGTGCGAGC
1 AAGATGGCCCTTGGTGCGGACGTTGCATCAAACACCATCGACACAAGTCGGCCCTTGGTGCGAGC
* * ** *
2956508 TCTTGCCTTGACCAACATTGAGAA
66 TATTACCTCAAACAACATTGAGAA
* * * * *
2956532 AAGATGGCCCTTGGTGTGGGCGGTTGCATCAAACACCATCGGCACATGTCGAG-CCTTGGTGCGG
1 AAGATGGCCCTTGGTGCGGAC-GTTGCATCAAACACCATCGACACAAGTCG-GCCCTTGGTGCGA
*
2956596 GCTATTACCTCAAACATCATTG
64 GCTATTACCTCAAACAACATTG
2956618 GCACATGCCA
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
89 19 0.28
90 49 0.71
91 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (89 bp):
AAGATGGCCCTTGGTGCGGACGTTGCATCAAACACCATCGACACAAGTCGGCCCTTGGTGCGAGC
TATTACCTCAAACAACATTGAGAA
Found at i:2956704 original size:45 final size:44
Alignment explanation
Indices: 2956655--2956777 Score: 124
Period size: 45 Copynumber: 2.7 Consensus size: 44
2956645 ATGCCTCGAG
* * *
2956655 TTGGTTCGGGCGATTGCCTCAACCACCATCGGCACATGCTAGCCC
1 TTGGTGCGGGC-AATGCCTCAACCACCATCGGCACACGCTAGCCC
* * * *
2956700 TTGGTGCGGGCAGT-CACATCGACCACCATCGGCACACGTTGGCCC
1 TTGGTGCGGGCAATGC-C-TCAACCACCATCGGCACACGCTAGCCC
2956745 TTGGTGCGGGCACATGCC-CTAACCACCATCGGC
1 TTGGTGCGGGCA-ATGCCTC-AACCACCATCGGC
2956778 TCCTGCTCAC
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.02
44 4 0.06
45 57 0.88
46 2 0.03
47 1 0.02
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.20
Consensus pattern (44 bp):
TTGGTGCGGGCAATGCCTCAACCACCATCGGCACACGCTAGCCC
Found at i:2964355 original size:170 final size:170
Alignment explanation
Indices: 2964153--2964767 Score: 479
Period size: 171 Copynumber: 3.6 Consensus size: 170
2964143 AACTCCATAT
* *
2964153 GCTTAGACTGGTAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTGA
1 GCTTAGACTGG-AATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCA
* * * *
2964217 ACCGGCCAGAGAGGCATAATGCACAAGCCGAGGATCGA-TCGATCCCCCTCTATATGCTGTCGAT
64 ACCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGAT-CCCCTCTATATGCTATCGAT
* * **
2964281 -CTCGCT-GTCGGTCCTGC-TACCATAACCCTCGGTC-CGACT-GGG
128 CCT-GCTACT-GGTCCTGCGTACC--AACCCTCAGTCTCGACTAGAC
* * *
2964323 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGTCGGG-GCTCA
1 GCTTAGAC-TGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTG-CGGGTGCTCA
** * * * *
2964387 ACCGATCGGAGAGGCAGAATGTGCAAGCC-AGGGATCGACCCGATCCCCTCTGTGTGCTATCGAT
64 ACCGGCCAGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGATCCCCTCTATATGCTATCGAT
* * * *
2964451 CCTGCTACTGGTCCTGCTGTAGCAACCCTCAGTCTGGTCTATAC
128 CCTGCTACTGGTCCTGC-GTACCAACCCTCAGTCTCGACTAGAC
* * *
2964495 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACT-GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAA
* * * * * * *
2964560 CCAGCCAGAGAGGCAGAATGCGTAAGTCGAGGATCGACCTGA-CCCCTCTCTGCGTGCTATCAAT
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCTCTAT--ATGCTATCGAT
* * * * * *
2964624 -CTCACTGCGGGTCCTGC-TATCGCAAGCCTCAGT-TCAGTCCA-A-
128 CCT-GCTACTGGTCCTGCGTA-C-CAACCCTCAGTCTC-GACTAGAC
* * * * * **
2964666 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACGAAACAAGAGGGCGGGCACT-AT
1 GCTTAGACT-GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCA-
* * * * *
2964730 GCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGA
64 ACCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA
2964768 TCGGGTGATA
Statistics
Matches: 362, Mismatches: 62, Indels: 41
0.78 0.13 0.09
Matches are distributed among these distances:
169 1 0.00
170 116 0.32
171 118 0.33
172 91 0.25
173 36 0.10
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (170 bp):
GCTTAGACTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAAC
CGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCTCTATATGCTATCGATCCT
GCTACTGGTCCTGCGTACCAACCCTCAGTCTCGACTAGAC
Found at i:2965317 original size:51 final size:51
Alignment explanation
Indices: 2965235--2965336 Score: 150
Period size: 51 Copynumber: 2.0 Consensus size: 51
2965225 CCCCCGGGCC
* * **
2965235 CCCCAATTGCCGGAACCCCCAATGCCATCGATCAGGTTCTTTGACGATGCT
1 CCCCAATCGCCGGAACCCCCAATACCATCGATCAGGTTCTCCGACGATGCT
* *
2965286 CCCCAATCGCTGGAACCCCCAATACCGTCGATCAGGTTCTCCGACGATGCT
1 CCCCAATCGCCGGAACCCCCAATACCATCGATCAGGTTCTCCGACGATGCT
2965337 TCGGTGTTGG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.22, C:0.37, G:0.20, T:0.22
Consensus pattern (51 bp):
CCCCAATCGCCGGAACCCCCAATACCATCGATCAGGTTCTCCGACGATGCT
Found at i:2965600 original size:45 final size:45
Alignment explanation
Indices: 2965513--2966181 Score: 376
Period size: 45 Copynumber: 14.8 Consensus size: 45
2965503 TTTTGGTACA
* ** * * *
2965513 GGCGCTTGCCTCGACTGCCATCGACATAAGCTAGGCCC-TGGTGTG
1 GGCGGTTGCCTCGACCACCATCGGCACATGCT-GGCCCTTGGTGTG
* * * * **
2965558 GGCGGTTGCCTCAATCACCATCGGTACATGCCGGCCCTTGGTGCA
1 GGCGGTTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGTG
* * * ** * * *
2965603 GGCCGTTGCCTCGACCACCATTGGCACAAGCCAGCCTTTGGTATA
1 GGCGGTTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGTG
* * * * *
2965648 GGTGGTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGAG
1 GGCGGTTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGTG
* * * * * * * * * * *
2965693 GGTGGTTACATCAAACACCATCGACAGATGCAGGGCCATGGTGCG
1 GGCGGTTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGTG
* * * * **
2965738 GGCGGTTACCTCGACCACCATCAGTACATGCAGAG-CCTTGGTACG
1 GGCGGTTGCCTCGACCACCATCGGCACATGCTG-GCCCTTGGTGTG
* * * ** * *
2965783 GGCAGTTGCCTCGAACACCCATCAGCATGTG-TCGGGCCTTGGTGTA
1 GGCGGTTGCCTCGACCA-CCATCGGCACATGCT-GGCCCTTGGTGTG
* * * *
2965829 GGCCGTTGCCTCGAGCACCATCGACACCA-GCTGGCCCTTGGTATG
1 GGCGGTTGCCTCGACCACCATCGGCA-CATGCTGGCCCTTGGTGTG
* * * *
2965874 GGCGGTTGCCTCGACCACCATCGGTACAAGATGGCCCCTGGTGTG
1 GGCGGTTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGTG
* *** * * *
2965919 GGCAGTTATGTCGAACACCATCGGCACATGCTGGGCCTTGGTGCG
1 GGCGGTTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGTG
* * * * * * *
2965964 GGCGGTTACCTCGACCACCATCGGTAGAAGATGGCCCCCTGGTGTA
1 GGCGGTTGCCTCGACCACCATCGGCACATGCTGG-CCCTTGGTGTG
* * * * *
2966010 GGTGGTTGCCTCGAACACTATCGGCACATGCTGGGCCTTGGTGTT
1 GGCGGTTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGTG
* * * * * *
2966055 AGCGGTTGCCTCTAGCACCATCGGCAC-TAGCCGACCCTTGGTGCG
1 GGCGGTTGCCTCGACCACCATCGGCACAT-GCTGGCCCTTGGTGTG
* * ** * * * * *
2966100 GGCAGTTGCCTTGACCACTGTCGGTACAAGATGGCCCCTGGTGCG
1 GGCGGTTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGTG
* * * *
2966145 GGCGGTTGCGTCAAACACCATCGGTACATGCTTGGCC
1 GGCGGTTGCCTCGACCACCATCGGCACATGC-TGGCC
2966182 TTGCTGCAGG
Statistics
Matches: 465, Mismatches: 147, Indels: 23
0.73 0.23 0.04
Matches are distributed among these distances:
44 8 0.02
45 384 0.83
46 73 0.16
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.21
Consensus pattern (45 bp):
GGCGGTTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGTG
Found at i:2965922 original size:136 final size:135
Alignment explanation
Indices: 2965737--2965986 Score: 290
Period size: 136 Copynumber: 1.8 Consensus size: 135
2965727 GCCATGGTGC
* * *
2965737 GGGCGGTTACCTCGACCACCATCAGTACATGCAGAGCCTTGGTACGGGCAGTTGCCTCGAACACC
1 GGGCGGTTACCTCGACCACCATCAGTACAAGCAGAGCCCTGGTACGGGCAGTTACCTCGAACA-C
** * * *
2965802 CATCAGCATGTG-TCGGGCCTTGGTGTAGGCCGTTGCCTCGAGCACCATCGACACCAGCTGGCCC
65 CATCAGCACATGCT-GGGCCTTGGTGCAGGCCGTTACCTCGACCACCATCGACACCAGCTGGCCC
2965866 TTGGTAT
129 TTGGTAT
* * ** **
2965873 GGGCGGTTGCCTCGACCACCATCGGTACAAG-ATG-GCCCCTGGTGTGGGCAGTTATGTCGAACA
1 GGGCGGTTACCTCGACCACCATCAGTACAAGCA-GAG-CCCTGGTACGGGCAGTTACCTCGAACA
* * *
2965936 CCATCGGCACATGCTGGGCCTTGGTGCGGGCGGTTACCTCGACCACCATCG
64 CCATCAGCACATGCTGGGCCTTGGTGCAGGCCGTTACCTCGACCACCATCG
2965987 GTAGAAGATG
Statistics
Matches: 94, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
135 43 0.46
136 51 0.54
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (135 bp):
GGGCGGTTACCTCGACCACCATCAGTACAAGCAGAGCCCTGGTACGGGCAGTTACCTCGAACACC
ATCAGCACATGCTGGGCCTTGGTGCAGGCCGTTACCTCGACCACCATCGACACCAGCTGGCCCTT
GGTAT
Found at i:2966017 original size:136 final size:135
Alignment explanation
Indices: 2965874--2966172 Score: 312
Period size: 136 Copynumber: 2.2 Consensus size: 135
2965864 CCTTGGTATG
* * **
2965874 GGCGGTTGCCTCGACCACCATCGGTACAAGATGGCCCCTGGTGTGGGCAGTTATGTCGAACACCA
1 GGCGGTTGCCTCGAACACCATCGGTACAAGATGGCCCCTGGTGTGAGCAGTTACCTCGAACACCA
* ** * *
2965939 TCGGCAC-ATGCTGGGCCTTGGTGCGGGCGGTTACCTCGACCACCATCGGTAGAAGATGGCCCCC
66 TCGGCACTA-GCCGACCCTTGGTGCGGGCAGTTACCTCGACCACCATCGGTACAAGATGG-CCCC
*
2966003 TGGTGTA
129 TGGTGCA
* * * * * * * * * * * *
2966010 GGTGGTTGCCTCGAACACTATCGGCACATGCTGGGCCTTGGTGTTAGCGGTTGCCTCTAGCACCA
1 GGCGGTTGCCTCGAACACCATCGGTACAAGATGGCCCCTGGTGTGAGCAGTTACCTCGAACACCA
* * **
2966075 TCGGCACTAGCCGACCCTTGGTGCGGGCAGTTGCCTTGACCACTGTCGGTACAAGATGGCCCCTG
66 TCGGCACTAGCCGACCCTTGGTGCGGGCAGTTACCTCGACCACCATCGGTACAAGATGGCCCCTG
*
2966140 GTGCG
131 GTGCA
* *
2966145 GGCGGTTGCGTCAAACACCATCGGTACA
1 GGCGGTTGCCTCGAACACCATCGGTACA
2966173 TGCTTGGCCT
Statistics
Matches: 130, Mismatches: 32, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
135 32 0.25
136 97 0.75
137 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (135 bp):
GGCGGTTGCCTCGAACACCATCGGTACAAGATGGCCCCTGGTGTGAGCAGTTACCTCGAACACCA
TCGGCACTAGCCGACCCTTGGTGCGGGCAGTTACCTCGACCACCATCGGTACAAGATGGCCCCTG
GTGCA
Found at i:2966048 original size:226 final size:225
Alignment explanation
Indices: 2965547--2966193 Score: 719
Period size: 226 Copynumber: 2.9 Consensus size: 225
2965537 CATAAGCTAG
* * * *
2965547 GCCCTGGTGTGGGCGGTTGCCTC-AATCACCATCGGTACATGCCGGCCCTTGGTGCAGGCCGTTG
1 GCCCTGGTGTGGGCGGTTGCCTCGAA-CACCATCGGCACATGCTGGGCCTTGGTGTAGGCCGTTG
* * * * * * *
2965611 CCTCGACCACCATTGGCACAAGCCAGCCTTTGGTATAGGTGGTTGCCTCGACCACCATCGGCACA
65 CCTCGAGCACCATCGGCACAAGCCGGCCCTTGGTATGGGCGGTTGCCTCGACCACCATCGGTACA
* * * * * *
2965676 AGATGGCCCCTGGTGAGGGTGGTTACATCAAACACCATCGACAGATGCAGGGCCATGGTGCGGGC
130 AGATGGCCCCTGGTGAGGGCGGTTACGTCAAACACCATCGGCACATGCTGGGCCTTGGTGCGGGC
*
2965741 GGTTACCTCGACCACCATCAGTACATGCAGA
195 GGTTACCTCGACCACCATCAGTACAAGCAGA
* ** * * **
2965772 GCCTTGGTACGGGCAGTTGCCTCGAACACCCATCAGCATGTG-TCGGGCCTTGGTGTAGGCCGTT
1 GCCCTGGTGTGGGCGGTTGCCTCGAACA-CCATCGGCACATGCT-GGGCCTTGGTGTAGGCCGTT
* * *
2965836 GCCTCGAGCACCATCGACACCAGCTGGCCCTTGGTATGGGCGGTTGCCTCGACCACCATCGGTAC
64 GCCTCGAGCACCATCGGCACAAGCCGGCCCTTGGTATGGGCGGTTGCCTCGACCACCATCGGTAC
* * * *
2965901 AAGATGGCCCCTGGTGTGGGCAGTTATGTCGAACACCATCGGCACATGCTGGGCCTTGGTGCGGG
129 AAGATGGCCCCTGGTGAGGGCGGTTACGTCAAACACCATCGGCACATGCTGGGCCTTGGTGCGGG
* *
2965966 CGGTTACCTCGACCACCATCGGTAGAAG-ATG-
194 CGGTTACCTCGACCACCATCAGTACAAGCA-GA
* * * *
2965997 GCCCCCTGGTGTAGGTGGTTGCCTCGAACACTATCGGCACATGCTGGGCCTTGGTGTTA-GCGGT
1 G--CCCTGGTGTGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGGTG-TAGGCCGT
* * * ** * * **
2966061 TGCCTCTAGCACCATCGGCACTAGCCGACCCTTGGTGCGGGCAGTTGCCTTGACCACTGTCGGTA
63 TGCCTCGAGCACCATCGGCACAAGCCGGCCCTTGGTATGGGCGGTTGCCTCGACCACCATCGGTA
* * * * * *
2966126 CAAGATGGCCCCTGGTGCGGGCGGTTGCGTCAAACACCATCGGTACATGCTTGGCCTTGCTGCAG
128 CAAGATGGCCCCTGGTGAGGGCGGTTACGTCAAACACCATCGGCACATGCTGGGCCTTGGTGCGG
2966191 GCG
193 GCG
2966194 ATTGCCTCAG
Statistics
Matches: 349, Mismatches: 65, Indels: 15
0.81 0.15 0.03
Matches are distributed among these distances:
225 23 0.07
226 302 0.87
227 24 0.07
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.21
Consensus pattern (225 bp):
GCCCTGGTGTGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGGTGTAGGCCGTTGC
CTCGAGCACCATCGGCACAAGCCGGCCCTTGGTATGGGCGGTTGCCTCGACCACCATCGGTACAA
GATGGCCCCTGGTGAGGGCGGTTACGTCAAACACCATCGGCACATGCTGGGCCTTGGTGCGGGCG
GTTACCTCGACCACCATCAGTACAAGCAGA
Found at i:2970635 original size:26 final size:26
Alignment explanation
Indices: 2970599--2970651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2970589 CAGGTCCGAT
*
2970599 CTTAGATTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTGCATG
*
2970625 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
2970651 C
1 C
2970652 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:2970963 original size:26 final size:26
Alignment explanation
Indices: 2970927--2970984 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
2970917 GGTCCGGTCC
*
2970927 GTATGCTTAGACTAGGAGTGAACTCT
1 GTATGCTTAGACTAGGAATGAACTCT
*
2970953 GTATGCTTAGACTGGGAATGAACTCT
1 GTATGCTTAGACTAGGAATGAACTCT
2970979 GTATGC
1 GTATGC
2970985 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (26 bp):
GTATGCTTAGACTAGGAATGAACTCT
Found at i:2972137 original size:45 final size:45
Alignment explanation
Indices: 2972088--2972249 Score: 148
Period size: 45 Copynumber: 3.6 Consensus size: 45
2972078 TGTTGGGCTA
*
2972088 TGGTGCAGGTGGTTGCCTCGACCACCATCGACACAAGATGGCCTT
1 TGGTGCAGGCGGTTGCCTCGACCACCATCGACACAAGATGGCCTT
** * ** * * *
2972133 TGGTGTGGGCAGTTGTGTCGAACACCATCGACACATGCTGGGCC-T
1 TGGTGCAGGCGGTTGCCTCGACCACCATCGACACAAGAT-GGCCTT
* * * *
2972178 TGGTGC-GGACGGTTACCTCGACCACCATTGACAGAAGATGGCCTC
1 TGGTGCAGG-CGGTTGCCTCGACCACCATCGACACAAGATGGCCTT
* * *
2972223 TGGTGCAGGCGATTGCCTTGAGCACCA
1 TGGTGCAGGCGGTTGCCTCGACCACCA
2972250 CTGGCATAAG
Statistics
Matches: 89, Mismatches: 24, Indels: 8
0.74 0.20 0.07
Matches are distributed among these distances:
44 6 0.07
45 77 0.87
46 6 0.07
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (45 bp):
TGGTGCAGGCGGTTGCCTCGACCACCATCGACACAAGATGGCCTT
Found at i:2972154 original size:90 final size:90
Alignment explanation
Indices: 2972060--2972227 Score: 216
Period size: 90 Copynumber: 1.9 Consensus size: 90
2972050 GGCGGTTCCA
* * * *
2972060 TCGAACACCATTAG-CATATGTTGGG-CTATGGTGCAGG-TGGTTGCCTCGACCACCATCGACAC
1 TCGAACACCA-TAGACACATGCTGGGCCT-TGGTGC-GGACGGTTACCTCGACCACCATCGACAC
*
2972122 AAGATGGCCTTTGGTGTGGGCAGTTGTG
63 AAGATGGCCTCTGGTGTGGGCAGTTGTG
* * *
2972150 TCGAACACCATCGACACATGCTGGGCCTTGGTGCGGACGGTTACCTCGACCACCATTGACAGAAG
1 TCGAACACCATAGACACATGCTGGGCCTTGGTGCGGACGGTTACCTCGACCACCATCGACACAAG
2972215 ATGGCCTCTGGTG
66 ATGGCCTCTGGTG
2972228 CAGGCGATTG
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
89 4 0.06
90 61 0.91
91 2 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (90 bp):
TCGAACACCATAGACACATGCTGGGCCTTGGTGCGGACGGTTACCTCGACCACCATCGACACAAG
ATGGCCTCTGGTGTGGGCAGTTGTG
Found at i:2975508 original size:45 final size:45
Alignment explanation
Indices: 2975450--2975545 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
2975440 TGTCGATAGG
*
2975450 GGTCAATGCGACTGCCCGCACCAAGGGCCAACGTGTGCCAATGGT
1 GGTCGATGCGACTGCCCGCACCAAGGGCCAACGTGTGCCAATGGT
* * ** *
2975495 GGTCGATGTGACTGCCCGCACTAAGGGCCAGTGTGTGCCGATGGT
1 GGTCGATGCGACTGCCCGCACCAAGGGCCAACGTGTGCCAATGGT
2975540 GGTCGA
1 GGTCGA
2975546 GGCAACCGCC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.19, C:0.27, G:0.35, T:0.19
Consensus pattern (45 bp):
GGTCGATGCGACTGCCCGCACCAAGGGCCAACGTGTGCCAATGGT
Found at i:2975562 original size:45 final size:45
Alignment explanation
Indices: 2975463--2975562 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 45
2975453 CAATGCGACT
* * ** *
2975463 GCCCGCACCAAGGGCCAACGTGTGCCAATGGTGGTCGATGTGACT
1 GCCCGCACTAAGGGCCAACGTGTGCCAATGGTGGTCGAGGCAACC
** *
2975508 GCCCGCACTAAGGGCCAGTGTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACTAAGGGCCAACGTGTGCCAATGGTGGTCGAGGCAACC
*
2975553 GCCCTCACTA
1 GCCCGCACTA
2975563 GCTCGAGGCA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.17
Consensus pattern (45 bp):
GCCCGCACTAAGGGCCAACGTGTGCCAATGGTGGTCGAGGCAACC
Found at i:2975632 original size:45 final size:45
Alignment explanation
Indices: 2975581--2975678 Score: 151
Period size: 45 Copynumber: 2.2 Consensus size: 45
2975571 CATGTGCCCA
* * *
2975581 CACCAAGGCCTGGCATGTGCCGATGGTGTTCAAGGCAACTACCTG
1 CACCAAGGCCCGGCATGTGCCAATGGTGTTCAAGGCAACTACCCG
* *
2975626 CACCAAGGCCCGGCATGTGCCAATGGTGTTCAATGCAACTGCCCG
1 CACCAAGGCCCGGCATGTGCCAATGGTGTTCAAGGCAACTACCCG
2975671 CACCAAGG
1 CACCAAGG
2975679 GCCATCTTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (45 bp):
CACCAAGGCCCGGCATGTGCCAATGGTGTTCAAGGCAACTACCCG
Found at i:2975697 original size:45 final size:45
Alignment explanation
Indices: 2975581--2975698 Score: 137
Period size: 45 Copynumber: 2.6 Consensus size: 45
2975571 CATGTGCCCA
** *
2975581 CACCAAGGCCTGGCATGTGCCGATGGTGTTCAAGGCAACTACCTG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCAAGGCAACTACCCG
* * * *
2975626 CACCAAGGCCCGGCATGTGCCAATGGTGTTCAATGCAACTGCCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCAAGGCAACTACCCG
* * * *
2975671 CACCAAGGGCCATCTTTTGCCGATGGTG
1 CACCAAGGCCCAGCATGTGCCGATGGTG
2975699 GTCGAGGTAA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (45 bp):
CACCAAGGCCCAGCATGTGCCGATGGTGTTCAAGGCAACTACCCG
Found at i:2975857 original size:45 final size:45
Alignment explanation
Indices: 2975747--2975858 Score: 136
Period size: 45 Copynumber: 2.5 Consensus size: 45
2975737 GATGGCGGTC
* * * * *
2975747 GAGGCAACCGCCTACACCAAAGCCCAGCACGTGTCGATGGTGTTT
1 GAGGCAACCGCCTGCACCAAGGACCAGCACGTGTCCATGGTGCTT
* **
2975792 GAGGCAACCGCCCGCACCAAGGACCAGCTTGTG-CCACTGGTGCTT
1 GAGGCAACCGCCTGCACCAAGGACCAGCACGTGTCCA-TGGTGCTT
2975837 GAGGCAACCGCCTGCACCAAGG
1 GAGGCAACCGCCTGCACCAAGG
2975859 GCCATTTTCT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 2 0.04
45 55 0.96
ACGTcount: A:0.23, C:0.34, G:0.29, T:0.14
Consensus pattern (45 bp):
GAGGCAACCGCCTGCACCAAGGACCAGCACGTGTCCATGGTGCTT
Found at i:2975878 original size:45 final size:45
Alignment explanation
Indices: 2975781--2975896 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 45
2975771 CAGCACGTGT
* * *
2975781 CGATGGTGTTTGAGGCAACCGCCCGCACCAAGGACCAGCTTGTGC
1 CGATGGTGCTTGAGGCAACCGCCCGCACCAAGGACCAGCTTCTAC
* * **
2975826 C-ACTGGTGCTTGAGGCAACCGCCTGCACCAAGGGCCATTTTCTAC
1 CGA-TGGTGCTTGAGGCAACCGCCCGCACCAAGGACCAGCTTCTAC
* * *
2975871 CGATGGTGGTCGAGGCAATCGCCCGC
1 CGATGGTGCTTGAGGCAACCGCCCGC
2975897 GCTAAGGCCC
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
44 1 0.02
45 56 0.97
46 1 0.02
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (45 bp):
CGATGGTGCTTGAGGCAACCGCCCGCACCAAGGACCAGCTTCTAC
Found at i:2975907 original size:135 final size:135
Alignment explanation
Indices: 2975736--2976023 Score: 292
Period size: 135 Copynumber: 2.1 Consensus size: 135
2975726 CGGTTTGTAT
* * * * * * *
2975736 CGATGGCGGTCGAGGCAACCGCCTACACCAAAGCCCAGCACGTGTCGATGGTGTTTGA-GGCAAC
1 CGATGGTGGTCGAGGCAACCGCCCACACCAAAGCCCAACACGTGCCAATGGTG-TTCACGACAAC
* * ** **
2975800 CGCCCGCACCAAGGACCAGC-TTGTGCCACTGGTGCTTGAGGCAACCGCCTGCACCAAGGGCCAT
65 CGCCCACACCAAGGACCAGCATT-TGCCAATGGTGCTTGACACAACCGCCCACACCAAGGGCCAT
*
2975864 TTTCTAC
129 CTTCTAC
* * * * *
2975871 CGATGGTGGTCGAGGCAATCGCCCGCGCTAAGGCCCAACACGTGCCAATGGTGTTCACGACAACC
1 CGATGGTGGTCGAGGCAACCGCCCACACCAAAGCCCAACACGTGCCAATGGTGTTCACGACAACC
* ** * * * *
2975936 GTCCACACCGGGGGCCAGCATTTGCCAATGGTGTTTGACACAACTGCCCACACCAGGGGCCATCT
66 GCCCACACCAAGGACCAGCATTTGCCAATGGTGCTTGACACAACCGCCCACACCAAGGGCCATCT
*
2976001 TCTAT
131 TCTAC
*
2976006 CGATAGTGGTCGAGGCAA
1 CGATGGTGGTCGAGGCAA
2976024 GAGCCTGCAC
Statistics
Matches: 123, Mismatches: 28, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
134 3 0.02
135 118 0.96
136 2 0.02
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (135 bp):
CGATGGTGGTCGAGGCAACCGCCCACACCAAAGCCCAACACGTGCCAATGGTGTTCACGACAACC
GCCCACACCAAGGACCAGCATTTGCCAATGGTGCTTGACACAACCGCCCACACCAAGGGCCATCT
TCTAC
Found at i:2976035 original size:45 final size:45
Alignment explanation
Indices: 2975982--2976115 Score: 153
Period size: 45 Copynumber: 3.0 Consensus size: 45
2975972 GACACAACTG
* * * *
2975982 CCCACACCAGGGGCCATCTTCTATCGATAGTGGTCGAGGCAA-GA
1 CCCACACCAAGGGCCATCTTATATCGATGGTGGTCGAGGCAACCA
** * **
2976026 GCCTGCACCAAGGGCCAGCTTATGCCGATGGTGGTCGAGGCAACCA
1 -CCCACACCAAGGGCCATCTTATATCGATGGTGGTCGAGGCAACCA
* *
2976072 CCCACACCAAAGGCCATCTTTTATCGATGGTGGTCGAGGCAACC
1 CCCACACCAAGGGCCATCTTATATCGATGGTGGTCGAGGCAACC
2976116 GCTCGTACCA
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 71 0.99
46 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (45 bp):
CCCACACCAAGGGCCATCTTATATCGATGGTGGTCGAGGCAACCA
Found at i:2976126 original size:45 final size:45
Alignment explanation
Indices: 2976006--2976290 Score: 169
Period size: 45 Copynumber: 6.3 Consensus size: 45
2975996 CATCTTCTAT
* ** * * * *
2976006 CGATAGTGGTCGAGGCAAGAGCCTGCACCAAGGGCCAGCTTATGC
1 CGATGGTGGTCGAGGCAACCGCCCGTACCAAAGGCCAGCTTATAC
* ** * * *
2976051 CGATGGTGGTCGAGGCAACCACCCACACCAAAGGCCATCTTTTAT
1 CGATGGTGGTCGAGGCAACCGCCCGTACCAAAGGCCAGCTTATAC
* ** *
2976096 CGATGGTGGTCGAGGCAACCGCTCGTACC-AAGGCCTAGCACATCC
1 CGATGGTGGTCGAGGCAACCGCCCGTACCAAAGGCC-AGCTTATAC
* * ** * * *
2976141 CGATGGTGTTCGAGGCAACCACCCGTACCAGGGGCCAGCATGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGTACCAAAGGCCAGCTTATAC
* * ** * ** *
2976186 CGATGGTGTTCGATGCAACCGCTTGTACC-ATGAGCCATTTTCTAC
1 CGATGGTGGTCGAGGCAACCGCCCGTACCAAAG-GCCAGCTTATAC
* ** * * * *
2976231 CGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGGCCAACTTATGC
1 CGATGGTGGTCGAGGCAACCGCCCGTACCAAAGGCCAGCTTATAC
* *
2976276 TGATGGTGCTCGAGG
1 CGATGGTGGTCGAGG
2976291 TAATTGCCTG
Statistics
Matches: 181, Mismatches: 55, Indels: 8
0.74 0.23 0.03
Matches are distributed among these distances:
44 7 0.04
45 168 0.93
46 6 0.03
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.19
Consensus pattern (45 bp):
CGATGGTGGTCGAGGCAACCGCCCGTACCAAAGGCCAGCTTATAC
Found at i:2976177 original size:90 final size:90
Alignment explanation
Indices: 2975982--2976215 Score: 247
Period size: 90 Copynumber: 2.6 Consensus size: 90
2975972 GACACAACTG
* ** * *
2975982 CCCACACCAGGGGCCATCTTCTATCGATAGTGGTCGAGGCAAGAGC-CTGCACCAAGGGCCAGCT
1 CCCACACCAGGGGCCATCTTCTATCGATGGTGGTCGAGGCAACCGCTC-GTACCAAGGGCCAGCA
* *
2976046 TATGCCGATGGTGGTCGAGGCAACCA
65 CATCCCGATGGTGGTCGAGGCAACCA
** *
2976072 CCCACACCAAAGGCCATCTTTTATCGATGGTGGTCGAGGCAACCGCTCGTACCAA-GGCCTAGCA
1 CCCACACCAGGGGCCATCTTCTATCGATGGTGGTCGAGGCAACCGCTCGTACCAAGGGCC-AGCA
*
2976136 CATCCCGATGGTGTTCGAGGCAACCA
65 CATCCCGATGGTGGTCGAGGCAACCA
** * * * ** * * *
2976162 CCCGTACCAGGGGCCAGCATGTGCCGATGGTGTTCGATGCAACCGCTTGTACCA
1 CCCACACCAGGGGCCATCTTCTATCGATGGTGGTCGAGGCAACCGCTCGTACCA
2976216 TGAGCCATTT
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
89 4 0.03
90 114 0.96
91 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (90 bp):
CCCACACCAGGGGCCATCTTCTATCGATGGTGGTCGAGGCAACCGCTCGTACCAAGGGCCAGCAC
ATCCCGATGGTGGTCGAGGCAACCA
Found at i:2977226 original size:45 final size:44
Alignment explanation
Indices: 2977050--2977540 Score: 286
Period size: 45 Copynumber: 10.9 Consensus size: 44
2977040 CCCGTGACAT
* * * * *
2977050 CCGCACCAAGGGCCGGCTAGTGTCGATGGTGATCGAGGCAACCGC
1 CCGCACCAA-GGCCAGCTTGTGCCGATGGTGGTCGAGGTAACCGC
* * * * * * * *
2977095 CCGCACTAGTGGCCATCTTTTACCGATAGTGGTCGAGGCAACAGC
1 CCGCACCA-AGGCCAGCTTGTGCCGATGGTGGTCGAGGTAACCGC
* * * * * ** * *
2977140 CCGTACTAAGGCCCAACATGTGCTGATGGTATTTGACGTAACCGC
1 CCGCACCAAGG-CCAGCTTGTGCCGATGGTGGTCGAGGTAACCGC
* * ** *
2977185 CCACACCAGAGGCCATCTTGTATCGATGGTGGTCGAGGTAACTGC
1 CCGCACCA-AGGCCAGCTTGTGCCGATGGTGGTCGAGGTAACCGC
* * * **
2977230 CCGCACCAAGGGTCAG-TTAGTGCCGATGGTGTTCAAGGCCACCGC
1 CCGCACCAA-GGCCAGCTT-GTGCCGATGGTGGTCGAGGTAACCGC
* **
2977275 CCGCACCAAGGCGC-GACATGTTTCGATGGTGGTCGAGGTAACCGC
1 CCGCACCAAGGC-CAG-CTTGTGCCGATGGTGGTCGAGGTAACCGC
* * * * * * *
2977320 CCACACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCAACTGC
1 CCGCACCAAGG-CCAGCTTGTGCCGATGGTGGTCGAGGTAACCGC
* * * * * * * *
2977365 TCGTACTAGGGGCCATCTTATGCCGATGGTGGTCAAGGCAACCGC
1 CCGCACCA-AGGCCAGCTTGTGCCGATGGTGGTCGAGGTAACCGC
* * * * *
2977410 CCGCACCAAGGGCCAGCTTGTACCAATGGTGGTCAAGGCAACCAC
1 CCGCACCAA-GGCCAGCTTGTGCCGATGGTGGTCGAGGTAACCGC
* * * *
2977455 CCACACCAAGAGCC-GACATGTGCCGATGGTGATCGAGGTAACCGT
1 CCGCACCAAG-GCCAG-CTTGTGCCGATGGTGGTCGAGGTAACCGC
* *
2977500 CCGCACCAGGGCCCAGCTTGTGCCGATGGCGGTCGAGGTAA
1 CCGCACCAAGG-CCAGCTTGTGCCGATGGTGGTCGAGGTAA
2977541 GTGCCTGTGC
Statistics
Matches: 331, Mismatches: 99, Indels: 32
0.72 0.21 0.07
Matches are distributed among these distances:
44 11 0.03
45 311 0.94
46 9 0.03
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (44 bp):
CCGCACCAAGGCCAGCTTGTGCCGATGGTGGTCGAGGTAACCGC
Found at i:2977316 original size:135 final size:134
Alignment explanation
Indices: 2977177--2977533 Score: 348
Period size: 135 Copynumber: 2.6 Consensus size: 134
2977167 GGTATTTGAC
* ** *
2977177 GTAACCGCCCACACCAGAGGCCATCTTGTATCGATGGTGGTCGAGGTAACTGCCCGCACCAAGGG
1 GTAACCGCCCACACCAGAGGCCA-CATGTGCCGATGGTGATCGAGGTAACTGCCCGCACCAAGGG
* * * * ** *
2977242 TCAGTTAGTGCCGATGGTGTTCAAGGCCACCGCCCGCACCAAGGCGCGA-CATGTTTCGATGGTG
65 CCAGTTAGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCAAGG-GCCAGCATGTACCAATGGTG
*
2977306 GTCGAG
129 GTCAAG
* * * * * * * *
2977312 GTAACCGCCCACACCACG-GCCCAGCATGTGCCGATGGTGTTCGATGCAACTGCTCGTACTAGGG
1 GTAACCGCCCACACCA-GAGGCCA-CATGTGCCGATGGTGATCGAGGTAACTGCCCGCACCAAGG
* *
2977376 GCCATCTTA-TGCCGATGGTGGTCAAGGCAACCGCCCGCACCAAGGGCCAGCTTGTACCAATGGT
64 GCCA-GTTAGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCAAGGGCCAGCATGTACCAATGGT
2977440 GGTCAAG
128 GGTCAAG
* * * *
2977447 GCAACCACCCACACCA-AGAGCCGACATGTGCCGATGGTGATCGAGGTAACCGTCCGCACC-AGG
1 GTAACCGCCCACACCAGAG-GCC-ACATGTGCCGATGGTGATCGAGGTAACTGCCCGCACCAAGG
*
2977510 GCCCAGCTT-GTGCCGATGGCGGTC
64 G-CCAG-TTAGTGCCGATGGTGGTC
2977534 GAGGTAAGTG
Statistics
Matches: 177, Mismatches: 36, Indels: 18
0.77 0.16 0.08
Matches are distributed among these distances:
134 7 0.04
135 165 0.93
136 5 0.03
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (134 bp):
GTAACCGCCCACACCAGAGGCCACATGTGCCGATGGTGATCGAGGTAACTGCCCGCACCAAGGGC
CAGTTAGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCAAGGGCCAGCATGTACCAATGGTGGT
CAAG
Found at i:2991284 original size:45 final size:45
Alignment explanation
Indices: 2991194--2991285 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
2991184 GACGAACGAG
* * * * *
2991194 CAAGGGCCAGCATGTGTCGATGGTGGTCAATGCGACTGCCTACAC
1 CAAGGGCCAGCATGTGCCGATGGTGGTCAAGGCAACCGCCCACAC
* *
2991239 CAAGGGCCAGCGTGTGCCGATGGTGGTCGAGGCAACCGCCCACAC
1 CAAGGGCCAGCATGTGCCGATGGTGGTCAAGGCAACCGCCCACAC
2991284 CA
1 CA
2991286 GCTCGAGGTA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.22, C:0.30, G:0.33, T:0.15
Consensus pattern (45 bp):
CAAGGGCCAGCATGTGCCGATGGTGGTCAAGGCAACCGCCCACAC
Found at i:2992663 original size:89 final size:89
Alignment explanation
Indices: 2992449--2992700 Score: 274
Period size: 89 Copynumber: 2.8 Consensus size: 89
2992439 CAGTATATAC
* * * * * * * *
2992449 CGATGGTGTAAGACGTAACTGCCCGCACCAAGGGCCATCTTGTGTCGATGGTGCTCGAGGCAATC
1 CGATGGTGTTAGACGCAACCGCCTGCACCAAGGGCCATCTTGTGCCGATGGTGGTTGAGGCAACC
* * *
2992514 ATCCACACCAAGGCCTGGCACGTGT
66 GTCCGCA-CAAGCCCTGGCACGTGT
* * * * *
2992539 CGATGGTGTTCGAGGCAACCGCCCT-CACCAGGGGCCATCTTCTACCGATGGTGGTTGAGGCAAC
1 CGATGGTGTTAGACGCAACCG-CCTGCACCAAGGGCCATCTTGTGCCGATGGTGGTTGAGGCAAC
*
2992603 CGTCCGCACAAGACCCT-GCATGTGT
65 CGTCCGCACAAG-CCCTGGCACGTGT
* **
2992628 CGATGGTGTTAGACACAACCGCCTGCACCAAGGGCCAAGTTGTGCCGATGGTGGTTGAGGCAACC
1 CGATGGTGTTAGACGCAACCGCCTGCACCAAGGGCCATCTTGTGCCGATGGTGGTTGAGGCAACC
*
2992693 GCCCGCAC
66 GTCCGCAC
2992701 CAAAGGCTGG
Statistics
Matches: 133, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
88 3 0.02
89 71 0.53
90 57 0.43
91 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (89 bp):
CGATGGTGTTAGACGCAACCGCCTGCACCAAGGGCCATCTTGTGCCGATGGTGGTTGAGGCAACC
GTCCGCACAAGCCCTGGCACGTGT
Found at i:2993536 original size:674 final size:672
Alignment explanation
Indices: 2992473--2993921 Score: 1807
Period size: 674 Copynumber: 2.1 Consensus size: 672
2992463 GTAACTGCCC
* *
2992473 GCACCAAGGGCCATCTTGTGTCGATGGTGCTCGAGGCAA-T-CATCCACACCAAGGCCTGGCACG
1 GCACCAAGGG-CATCTTGTGTCGATGGTGCTCGAGGCAACTGC--CCGCACCAAGGCCCGGCACG
* * * *
2992536 TGTCGATGGTGTTCGAGGCAACCGCCCTCACCAGGGGCCATCTTCTACCGATGGTGGTTGAGGCA
63 TGCCGATGGTGTTCAAGGCAACCACCCGCACCA-GGGCCATCTTCTACCGATGGTGGTTGAGGCA
* *
2992601 ACCGTCCGCACAAGACCCTGCATGTGTCGATGGTGTTAGACACAACCGCCTGCACCAAGGGCCAA
127 ACCGCCCGCACAAGACCCTGCATGTGTCGATGGTGATAGACACAACCGCCTGCACCAAGGGCCAA
* * * * * ** *
2992666 GTTGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAAAGGCTGGCTGGTGTCAATGGTGCTCGG
192 CTTGTGCCAATGGCGGTCGAGGCAACCGCCCGCACCAAAGGCTAGCTAATATCAATGGTGCTCGG
* * *
2992731 GGTAACGGCCCACACCAAAGCCCGACATGTGTCGATGGTATTCGAGGTAACCGCCCGCACCAAGG
257 GGTAACGGCCCACACCAAAGCCCGACACGTGTCGATGATATTCGAGGCAACCGCCCGCACCAAGG
* * * * *
2992796 GTCGGCATGTGCCGATGGTGGTCGAGGCAACCACCCTCACCTGGGGCCATCTTCTGTCGATTATG
322 CTCGACATGTGCCGATGGTGGTCGAGGCAACCACCCACACCCGGGGCCATCTTCTGACGATTATG
** * **
2992861 GTAGAGGCAAGAGCCCGTACCAAGGGCAGGCTTATGTCGATGGTGTTTGAGGCAACCGCCCGTAC
387 GTAGAGGCAAGAGCCCACACCAAGGGCAGGCTTATGTCGATGGTGTTCGAGGCAACCGCCCACAC
* * *
2992926 CAAGGGC-CTGCTGGTGTCGATGGTGCTCAGGGCAACGGCCCGTACCAAGGCCCAACACGTGCTG
452 CAA-AGCTCTACTGGTGTCGATGGTGCTCAGGGCAACGGCCCGTACCAAGGCCCAACACGTGCTA
* * * *
2992990 ATAATGTTCGAGGTAACCGCCTGTACCAAGGCTCGGCATGTGCCAATGGTGGTCGAGGCAACCAT
516 ATAATGTTCGAGGCAACCGACTGCACCAAGGCTCGGCATGTGCCAATGGTGGTCGAGGCAACCAC
* * * *
2993055 TCGCACCACGACCCAGCATGTGCCGATGGTGTTCGATGCAACTGCCCACCCCAGGGGCCATCTTA
581 CCGCACCACGACCCAGCATGTGCCAATAGTGTTCGATGCAACCGCCCACCCCAGGGGCCATCTTA
* *
2993120 TGTCGATAGTGTTCAAGGCAACCGCTCA
646 TGCCGATAGTGGTCAAGGCAACCGC-CA
* *
2993148 -CACCAAGGGCATCCTAGTGTTGATGGTGCTCGAGGCAACTGCCCGCACCAAGGCCCGGCACGTG
1 GCACCAAGGGCAT-CTTGTGTCGATGGTGCTCGAGGCAACTGCCCGCACCAAGGCCCGGCACGTG
* * ** *
2993212 CCGATGCTGTTCAAGGCAACCACCCGCACCAGGGCCATCTTTTATTGATGGTGGTTGAGGTAACC
65 CCGATGGTGTTCAAGGCAACCACCCGCACCAGGGCCATCTTCTACCGATGGTGGTTGAGGCAACC
* * * * * *
2993277 GCCCGCACCAAGGCCTTGCATGTGTCGATGGTGATAGACACAATCG-CTCGTACCAGGGGCCATC
130 GCCCGCA-CAAGACCCTGCATGTGTCGATGGTGATAGACACAACCGCCT-GCACCAAGGGCCAAC
* * * *
2993341 TTGTGTCAATGGCGGTCGAGGCAACTGCTCGCACCAAAGG-TCAGCTAATATCGATGGTGCTCGG
193 TTGTGCCAATGGCGGTCGAGGCAACCGCCCGCACCAAAGGCT-AGCTAATATCAATGGTGCTCGG
* * * * * * **
2993405 GGTAACGGCTCGCACCAAGGCCCGACACGTGTTGATGATGTTTGAGGCAACCGTTCGCACCAAGG
257 GGTAACGGCCCACACCAAAGCCCGACACGTGTCGATGATATTCGAGGCAACCGCCCGCACCAAGG
* * *
2993470 CTCGACATGTGTCGATGGTGGTCGAGGTAACCGCCCACACCCGGGGCCATCTTCT-ACAGATTAT
322 CTCGACATGTGCCGATGGTGGTCGAGGCAACCACCCACACCCGGGGCCATCTTCTGAC-GATTAT
* * ** * * *
2993534 GGTTGAGGCTAGAGCCCACACCAAGGGTTGGCTTGTGTTGATTGTGTTCGAGGCAACCGCCCACA
386 GGTAGAGGCAAGAGCCCACACCAAGGGCAGGCTTATGTCGATGGTGTTCGAGGCAACCGCCCACA
* * * ** *
2993599 CCAAAGCTCTACTGGTGTCGATGGTGCTCGGGGTAACGGCCTGTACCAAGGCCCGGCACGTGTTA
451 CCAAAGCTCTACTGGTGTCGATGGTGCTCAGGGCAACGGCCCGTACCAAGGCCCAACACGTGCTA
* * ***
2993664 ATAGTGTTCGAGGCAACTGACTGCACCAAGGCTCGGCATGTGTTGATGGTGGTCGAGGCAACCAC
516 ATAATGTTCGAGGCAACCGACTGCACCAAGGCTCGGCATGTGCCAATGGTGGTCGAGGCAACCAC
* * * *
2993729 CCGCACCATGGCCCTGCATGTGCCAATAGTGTTCGATGCAACCGCCCACCCCAGGGGCCATCTTG
581 CCGCACCACGACCCAGCATGTGCCAATAGTGTTCGATGCAACCGCCCACCCCAGGGGCCATCTTA
*
2993794 TGCCGATGGTGGTCAAGGCAACCGCCA
646 TGCCGATAGTGGTCAAGGCAACCGCCA
* * * * **
2993821 GCACCAAGGGCCGA-CTTGCGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCGGCATAT
1 GCACCAAGGG-C-ATCTTGTGTCGATGGTGCTCGAGGCAACTGCCCGCACCAAGGCCCGGCACGT
* * *
2993885 GCCGATGGTGCTCAAGGCAACCACCTGTACCAGGGCC
64 GCCGATGGTGTTCAAGGCAACCACCCGCACCAGGGCC
2993922 CAGCTTGTGC
Statistics
Matches: 658, Mismatches: 105, Indels: 23
0.84 0.13 0.03
Matches are distributed among these distances:
673 47 0.07
674 607 0.92
675 2 0.00
676 2 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.19
Consensus pattern (672 bp):
GCACCAAGGGCATCTTGTGTCGATGGTGCTCGAGGCAACTGCCCGCACCAAGGCCCGGCACGTGC
CGATGGTGTTCAAGGCAACCACCCGCACCAGGGCCATCTTCTACCGATGGTGGTTGAGGCAACCG
CCCGCACAAGACCCTGCATGTGTCGATGGTGATAGACACAACCGCCTGCACCAAGGGCCAACTTG
TGCCAATGGCGGTCGAGGCAACCGCCCGCACCAAAGGCTAGCTAATATCAATGGTGCTCGGGGTA
ACGGCCCACACCAAAGCCCGACACGTGTCGATGATATTCGAGGCAACCGCCCGCACCAAGGCTCG
ACATGTGCCGATGGTGGTCGAGGCAACCACCCACACCCGGGGCCATCTTCTGACGATTATGGTAG
AGGCAAGAGCCCACACCAAGGGCAGGCTTATGTCGATGGTGTTCGAGGCAACCGCCCACACCAAA
GCTCTACTGGTGTCGATGGTGCTCAGGGCAACGGCCCGTACCAAGGCCCAACACGTGCTAATAAT
GTTCGAGGCAACCGACTGCACCAAGGCTCGGCATGTGCCAATGGTGGTCGAGGCAACCACCCGCA
CCACGACCCAGCATGTGCCAATAGTGTTCGATGCAACCGCCCACCCCAGGGGCCATCTTATGCCG
ATAGTGGTCAAGGCAACCGCCA
Found at i:2993878 original size:45 final size:45
Alignment explanation
Indices: 2991299--2993946 Score: 1040
Period size: 45 Copynumber: 58.9 Consensus size: 45
2991289 CGAGGTATGT
* * * * * * *
2991299 GCCCACACCGAGGCCCGACATGTGTCGATGGTGTTTGAGGCAATC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * * * *
2991344 GCCCGCACCAA-AGCTCGGCATATGCCAATGGTGTTCGACGCAACC
1 GCCCGCACCAAGGGC-CGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * **
2991389 ACCCGTACTAGGGGCC-ATCTTCTGTCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * *
2991434 GCCCGCACCGAGGGTCGGCTTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * *
2991479 GCCCGCACTAAGGGCC-ATCTTCTATCAATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * *
2991524 GCCCACACCAAGGGCC-AGCTTGTGCCGATAGTGCTCGAGGCAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* *
2991569 GCCCGCACCAAGGGCC-ATCTTCTGTCAATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * * *
2991614 GCCCGCACCAA-GACCCAGCATGTGTTGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * * **
2991659 GCCCACACC-AGGGCCCAACATGTGCCGATGATGTTCGATACAACC
1 GCCCGCACCAAGGG-CCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * **
2991704 GCCCACACTAAGGGCC-ATTTTCTGTCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * *
2991749 GCCCGCACCAAGGGTCGGCTTGTGCCGATGGTGCTCGAGGTAATC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * *
2991794 GCTCACACCAAGGGCC-ATCTTCTG-CTAATAGTGGTCAAGGCAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTC-GATGGTGGTCGAGGCAACC
* * * * *
2991839 ACCCGCGCCAAGGCCCAGCAC--GTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCC-G-ACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * * * *
2991884 ACCCGCACAAAGGGCC-AGCATGTGTCGATAGTGTTCGACGTAACT
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * **
2991929 GCCCGTACC-AGGGGCTATCTTATATCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
** *
2991974 GCCTACACCAAGGGCCAACTTGTG-CTGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTC-GATGGTGGTCGAGGCAACC
** * ** *
2992019 GCCCAAACCAA-GGCCTAGCACGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* ** * * * * *
2992064 ACCAACACCAA-GGCCCAGCATGTGTCGATGGTGTTCGATGTAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * *
2992109 GCCCACACTAGGGGCC-ATCTTATGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* ** * * *
2992154 GCCCACACCAAGGGTTGGCTTGTGCCGATGGTGGTGGAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * ** * **
2992199 GCCTGCACCAGGGGTC-ATCTTCTGTCGATTATGGTCGAAGCAAGA
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* ** ** * *
2992244 GCTCGCACCAAGGGTTGACTTGTGTTAATGGTGCTCGAGGTAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * *
2992289 ACCCACACCAGGGGCC-ATCTTTTGCCAATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * *
2992334 ACCCGCACCAGGGGCC-ATCTTATGTCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * ** ** * *
2992379 ACCAGCACCAAGGGTCGACTAATACCGATGATGCTCGAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * ** * * * *
2992424 GCCCGTACCAA-GGCCCAGTATATACCGATGGT-GTAAGACGTAACT
1 GCCCGCACCAAGGGCCGACT-TGTGTCGATGGTGGT-CGAGGCAACC
* *
2992469 GCCCGCACCAAGGGCC-ATCTTGTGTCGATGGTGCTCGAGGCAATC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
** * * ** *
2992514 ATCCACACCAA-GGCCTGGCACGTGTCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCC-GACTTGTGTCGATGGTGGTCGAGGCAACC
* * * ** *
2992559 GCCCTCACCAGGGGCC-ATCTTCTACCGATGGTGGTTGAGGCAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* ** * * * **
2992604 GTCCGCA-CAAGACCCTG-CATGTGTCGATGGTGTTAGACACAACC
1 GCCCGCACCAAGGGCC-GACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * *
2992648 GCCTGCACCAAGGGCCAAGTTGTGCCGATGGTGGTTGAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * * * * *
2992693 GCCCGCACCAAAGGCTGGCTGGTGTCAATGGTGCTCGGGGTAACG
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * ** *
2992738 GCCCACACCAAAGCCCGACATGTGTCGATGGTATTCGAGGTAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * *
2992783 GCCCGCACCAAGGGTCGGCATGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * ** * ** * **
2992828 ACCCTCACCTGGGGCC-ATCTTCTGTCGATTATGGTAGAGGCAAGA
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * *
2992873 GCCCGTACCAAGGGCAGGCTTATGTCGATGGTGTTTGAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * *
2992918 GCCCGTACCAAGGGCCTG-CTGGTGTCGATGGTGCTC-AGGGCAACG
1 GCCCGCACCAAGGGCC-GACTTGTGTCGATGGTGGTCGA-GGCAACC
* * * ** ** * *
2992963 GCCCGTACCAAGGCCCAACACGTG-CTGATAATGTTCGAGGTAACC
1 GCCCGCACCAAGGGCCGACTTGTGTC-GATGGTGGTCGAGGCAACC
* * * * * *
2993008 GCCTGTACCAA-GGCTCGGCATGTGCCAATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGC-CGACTTGTGTCGATGGTGGTCGAGGCAACC
*** * * * * * * * *
2993053 ATTCGCACC-ACGACCCAGCATGTGCCGATGGTGTTCGATGCAACT
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * * *
2993098 GCCCACCCCAGGGGCC-ATCTTATGTCGATAGTGTTCAAGGCAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * *** * * * *
2993143 GCTCACACCAAGGGCATCCTAGTGTTGATGGTGCTCGAGGCAACT
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * ** * * * *
2993188 GCCCGCACCAAGGCCCGGCACGTGCCGATGCTGTTCAAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * *
2993233 ACCCGCACC-AGGGCC-ATCTTTTATTGATGGTGGTTGAGGTAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * ** *
2993277 GCCCGCACCAA-GGCCTTG-CATGTGTCGATGGTGATAGACACAATC
1 GCCCGCACCAAGGGCC--GACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * *
2993322 GCTCGTACCAGGGGCC-ATCTTGTGTCAATGGCGGTCGAGGCAACT
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * * ** * * * * *
2993367 GCTCGCACCAAAGGTC-AGCTAATATCGATGGTGCTCGGGGTAACG
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* * ** * * * *
2993412 GCTCGCACCAAGGCCCGACACGTGTTGATGATGTTTGAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
** * *
2993457 GTTCGCACCAA-GGCTCGACATGTGTCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGGC-CGACTTGTGTCGATGGTGGTCGAGGCAACC
* ** * * ** * * **
2993502 GCCCACACCCGGGGCC-ATCTTCT-ACAGATTATGGTTGAGGCTAGA
1 GCCCGCACCAAGGGCCGA-CTTGTGTC-GATGGTGGTCGAGGCAACC
* ** * * * *
2993547 GCCCACACCAAGGGTTGGCTTGTGTTGATTGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * * * *
2993592 GCCCACACCAA-AGCTCTACTGGTGTCGATGGTGCTCGGGGTAACG
1 GCCCGCACCAAGGGC-CGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * ** ** * * *
2993637 GCCTGTACCAAGGCCCGGCACGTGTTAATAGTGTTCGAGGCAACT
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * *
2993682 GACTGCACCAA-GGCTCGGCATGTGTTGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGC-CGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * * * * *
2993727 ACCCGCACCATGGCCCTG-CATGTGCCAATAGTGTTCGATGCAACC
1 GCCCGCACCAAGGGCC-GACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * *
2993772 GCCCACCCCAGGGGCC-ATCTTGTGCCGATGGTGGTCAAGGCAACC
1 GCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGGTCGAGGCAACC
* *
2993817 GCCAGCACCAAGGGCCGACTTGCGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * * *
2993862 GCCCGCACCAAGGGCCGGCATATGCCGATGGTGCTCAAGGCAACC
1 GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
* * * * *
2993907 ACCTGTACC-AGGGCCCAGCTTGTG-CTGATGGCGGTCGAGG
1 GCCCGCACCAAGGGCCGA-CTTGTGTC-GATGGTGGTCGAGG
2993947 TAAGTGCCTG
Statistics
Matches: 1893, Mismatches: 628, Indels: 164
0.71 0.23 0.06
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 111 0.06
45 1726 0.91
46 52 0.03
47 1 0.00
48 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.19
Consensus pattern (45 bp):
GCCCGCACCAAGGGCCGACTTGTGTCGATGGTGGTCGAGGCAACC
Found at i:2994037 original size:23 final size:23
Alignment explanation
Indices: 2993992--2994047 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
2993982 ATGGTCGATG
*
2993992 CATGTGCGATCACCATGCACCAT
1 CATGTGCCATCACCATGCACCAT
* **
2994015 CTTGTGCCATCACCATGTGCCAT
1 CATGTGCCATCACCATGCACCAT
2994038 CATGTGCCAT
1 CATGTGCCAT
2994048 TGATGGTCGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.21, C:0.34, G:0.18, T:0.27
Consensus pattern (23 bp):
CATGTGCCATCACCATGCACCAT
Found at i:2994889 original size:45 final size:45
Alignment explanation
Indices: 2994790--2995640 Score: 204
Period size: 45 Copynumber: 18.9 Consensus size: 45
2994780 GGGGCAATCG
* * * * * ***
2994790 CCCGCACTAGGGGCCAGCATATGTCGATGGTGTTCGACATAACCA
1 CCCGCACTAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCA
* * * *
2994835 CTCGGACTAAGGGCCATCTTCTGCCGATGGTGGTCGAGGCAA-GA
1 CCCGCACTAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCA
** * *
2994879 GCCCGCACTAAGGGCCGGCTTATGCCAATGGTGGTCAAGGCAACCA
1 -CCCGCACTAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCA
* * ** * **
2994925 CCCGCACCAAGGGCCATCTTTTGTTGATGGTGGTCGAGGGAACTG
1 CCCGCACTAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCA
* * **** * * *
2994970 CCCGTACCAA-GGCCTAGGACATGCCGATGGTGTTCGAGGCAATCG
1 CCCGCACTAAGGGCC-ATCTTATGCCGATGGTGGTCGAGGCAACCA
* ** * * * * * * * *
2995015 CCTGCAC-CGGGGCTAGCATGTGCCGATGGTGTTCGACGTAACCG
1 CCCGCACTAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCA
* * * ** *
2995059 CCAGCAC-CAGGAGCCATCTTCTGTAGATGGTGGTCGAGGCAA-GA
1 CCCGCACTAAGG-GCCATCTTATGCCGATGGTGGTCGAGGCAACCA
* * * * * * * *
2995103 GCCTGCACCAAGGGTCAACTTGTGTCGATGGTGCTCAAGGCAACCGA
1 -CCCGCACTAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACC-A
* * * *** * * * *
2995150 -CCGTACCAA-GGCCTAGCACGTGTCGATGATGTTCGAGGCAGCCA
1 CCCGCACTAAGGGCC-ATCTTATGCCGATGGTGGTCGAGGCAACCA
* * * * * *
2995194 CTCGTACCAA-GGCCTAGCATATGCCGATGGTGGTCGAGACAACCA
1 CCCGCACTAAGGGCC-ATCTTATGCCGATGGTGGTCGAGGCAACCA
* * * * * * * * * *
2995239 CCAGTACTAAGGCCCAGCATGTACCGATGGTGTTCGATGCAACCG
1 CCCGCACTAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCA
* ** * * * * *
2995284 CCCACA-TCGGGGGCCATCTTGTGTCGATGGTGGTCAAGACAACCG
1 CCCGCACT-AAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCA
** * * * * * *
2995329 CCCGCACCGAGGGTCAGC-TAGTGGCGATGGTGGTCAAGGCAATCG
1 CCCGCACTAAGGGCCATCTTA-TGCCGATGGTGGTCGAGGCAACCA
* * * * * * * *
2995374 CCTGCACCAGGGGCCATCTTCTGCCAATTGTGGTCGAGACAA-GA
1 CCCGCACTAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCA
* * ** *
2995418 GCCCGTAGC-AAGGGCCGA-CTTGTGTTGATGGTGCTCGAGGCAACCA
1 -CCCGCA-CTAAGGGCC-ATCTTATGCCGATGGTGGTCGAGGCAACCA
* * * * * *
2995464 CCCGCACTAGGGGCCATCTTCTACCGATGGTGATCAAGGCAACCG
1 CCCGCACTAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCA
* * * * *
2995509 CCCGCACCAA-GGCCTAGC-AAGTGCCGATGGTGTTCGAGGCAACCG
1 CCCGCACTAAGGGCC-ATCTTA-TGCCGATGGTGGTCGAGGCAACCA
* * * * * * * ** * *
2995554 CTCGTACCAAGGGCCAACATATGCTGATGGTGTTTAAGGCAATCG
1 CCCGCACTAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCA
* * * * *
2995599 CCCGTAC-CAGTGGCCATTTTCTACCGATGGTGGTCGAGGCAA
1 CCCGCACTAAG-GGCCATCTTATGCCGATGGTGGTCGAGGCAA
2995641 TTGGTTGAGG
Statistics
Matches: 592, Mismatches: 187, Indels: 54
0.71 0.22 0.06
Matches are distributed among these distances:
44 52 0.09
45 523 0.88
46 16 0.03
47 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.19
Consensus pattern (45 bp):
CCCGCACTAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCA
Found at i:2995568 original size:90 final size:90
Alignment explanation
Indices: 2994845--2995607 Score: 376
Period size: 90 Copynumber: 8.5 Consensus size: 90
2994835 CTCGGACTAA
* * ** * * * * *
2994845 GGGCCATCTTCTGCCGATGGTGGTCGAGGCAAGAGCCCGCACTAAGGGCC-GGCTTA-TGCCAAT
1 GGGCCATCTTCTGCCGATGGTGGTCAAGACAACCGCCCGTACCAA-GGCCTAGC-AAGTGCCGAT
* * * *
2994908 GGTGGTCAAGGCAACCACCCGCACCAA
64 GGTGTTCGAGGCAACCGCCCGCACCAG
* ** * ** * *
2994935 GGGCCATCTTTTGTTGATGGTGGTCGAGGGAACTGCCCGTACCAAGGCCTAGGACA-TGCCGATG
1 GGGCCATCTTCTGCCGATGGTGGTCAAGACAACCGCCCGTACCAAGGCCTAGCA-AGTGCCGATG
* *
2994999 GTGTTCGAGGCAATCGCCTGCACC-G
65 GTGTTCGAGGCAACCGCCCGCACCAG
* * * * * * * * * *** **
2995024 GGGCTAGCATGTGCCGATGGTGTTC--GACGTAACCGCCAGCACCAGGAGCC-ATCTTCTGTAGA
1 GGGCCATCTTCTGCCGATGGTGGTCAAGAC--AACCGCCCGTACCAAG-GCCTAGCAAGTGCCGA
* ** * *
2995086 TGGTGGTCGAGGCAAGAGCCTGCACCAA
63 TGGTGTTCGAGGCAACCGCCCGCACCAG
* * * * * * * * * *
2995114 GGGTCAACTTGTGTCGATGGTGCTCAAGGCAACCGACCGTACCAAGGCCTAGCACGTGTCGATGA
1 GGGCCATCTTCTGCCGATGGTGGTCAAGACAACCGCCCGTACCAAGGCCTAGCAAGTGCCGATGG
* * * *
2995179 TGTTCGAGGCAGCCACTCGTACCA-
66 TGTTCGAGGCAACCGCCCGCACCAG
* * * * * * * * * * *
2995203 AGGCCTAGCATATGCCGATGGTGGTCGAGACAACCACCAGTACTAAGGCCCAGCATGTACCGATG
1 GGGCC-ATCTTCTGCCGATGGTGGTCAAGACAACCGCCCGTACCAAGGCCTAGCAAGTGCCGATG
* * * *
2995268 GTGTTCGATGCAACCGCCCACATCGG
65 GTGTTCGAGGCAACCGCCCGCACCAG
* * * * * * *
2995294 GGGCCATCTTGTGTCGATGGTGGTCAAGACAACCGCCCGCACCGAGG-GTCAGCTAGTGGCGATG
1 GGGCCATCTTCTGCCGATGGTGGTCAAGACAACCGCCCGTACCAAGGCCT-AGCAAGTGCCGATG
* * * *
2995358 GTGGTCAAGGCAATCGCCTGCACCAG
65 GTGTTCGAGGCAACCGCCCGCACCAG
* * * ** * * ** **
2995384 GGGCCATCTTCTGCCAATTGTGGTCGAGACAAGAGCCCGTAGCAAGGGCCGA-CTTGTGTTGATG
1 GGGCCATCTTCTGCCGATGGTGGTCAAGACAACCGCCCGTACCAA-GGCCTAGCAAGTGCCGATG
* * *
2995448 GTGCTCGAGGCAACCACCCGCACTAG
65 GTGTTCGAGGCAACCGCCCGCACCAG
* * * *
2995474 GGGCCATCTTCTACCGATGGTGATCAAGGCAACCGCCCGCACCAAGGCCTAGCAAGTGCCGATGG
1 GGGCCATCTTCTGCCGATGGTGGTCAAGACAACCGCCCGTACCAAGGCCTAGCAAGTGCCGATGG
* * *
2995539 TGTTCGAGGCAACCGCTCGTACCAA
66 TGTTCGAGGCAACCGCCCGCACCAG
* * * * * * * *
2995564 GGGCCAACATATGCTGATGGTGTTTAAGGCAATCGCCCGTACCA
1 GGGCCATCTTCTGCCGATGGTGGTCAAGACAACCGCCCGTACCA
2995608 GTGGCCATTT
Statistics
Matches: 489, Mismatches: 168, Indels: 32
0.71 0.24 0.05
Matches are distributed among these distances:
87 1 0.00
89 73 0.15
90 406 0.83
91 7 0.01
92 2 0.00
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.19
Consensus pattern (90 bp):
GGGCCATCTTCTGCCGATGGTGGTCAAGACAACCGCCCGTACCAAGGCCTAGCAAGTGCCGATGG
TGTTCGAGGCAACCGCCCGCACCAG
Found at i:2995803 original size:193 final size:193
Alignment explanation
Indices: 2995468--2995833 Score: 549
Period size: 193 Copynumber: 1.9 Consensus size: 193
2995458 CAACCACCCG
* * *
2995468 CACTAGGGGCCATCTTCTACCGATGGTGATCAAGGCAACCGCCCGCACCAAGGCCTAGCAAGTGC
1 CACTAGGGGCCATCTTCTACCGATGGTGATCAAGGCAACCACCCACACCAAGGCCCAGCAAGTGC
* *
2995533 CGATGGTGTTCGAGGCAACCGCTCGTACCAAGGGCCAACATATGCTGATGGTGTTTAAGGCAATC
66 CGATGGTGTTCGAGGCAACCGCTCATACCAAGGGCCAACATATGCTGATGGTGTTTAACGCAATC
* * *
2995598 GCCCGTACCAGTGGCCATTTTCTACCGATGGTGGTCGAGGCAATTGGTTGAGGTAATCGCCCA
131 GCCCGCACCAGTGGCCAATTTCTACCGATGATGGTCGAGGCAATTGGTTGAGGTAATCGCCCA
* *
2995661 CACTAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCACCCACACCAAGGCCCAGCAAGTGC
1 CACTAGGGGCCATCTTCTACCGATGGTGATCAAGGCAACCACCCACACCAAGGCCCAGCAAGTGC
* * * *
2995726 CGATGGTGTTCGAGGCAATCGCTCATACC-AGAGGCCAGCATGTG-TCGATGGTGTTTGACGCAA
66 CGATGGTGTTCGAGGCAACCGCTCATACCAAG-GGCCAACATATGCT-GATGGTGTTTAACGCAA
*
2995789 -CGGCCCGCACCAGTGGCCAATTTCTATCGATGATGGTCGAGGCAA
129 TC-GCCCGCACCAGTGGCCAATTTCTACCGATGATGGTCGAGGCAA
2995834 GAGCCCGTAG
Statistics
Matches: 155, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
192 4 0.03
193 151 0.97
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (193 bp):
CACTAGGGGCCATCTTCTACCGATGGTGATCAAGGCAACCACCCACACCAAGGCCCAGCAAGTGC
CGATGGTGTTCGAGGCAACCGCTCATACCAAGGGCCAACATATGCTGATGGTGTTTAACGCAATC
GCCCGCACCAGTGGCCAATTTCTACCGATGATGGTCGAGGCAATTGGTTGAGGTAATCGCCCA
Found at i:2996016 original size:45 final size:45
Alignment explanation
Indices: 2995682--2996283 Score: 157
Period size: 45 Copynumber: 13.4 Consensus size: 45
2995672 ATCTTCTACC
* * * *
2995682 GATGGTGGTCGAGGCAACCACCCA-CACCAAGGCCCAGCAAGTGCC
1 GATGGTGTTCGAGGCAACC-GCCAGCACCAAGGCCCAGCATGTGCT
* *
2995727 GATGGTGTTCGAGGCAATCGCTCA-TACCAGAGG-CCAGCATGTG-T
1 GATGGTGTTCGAGGCAACCGC-CAGCACCA-AGGCCCAGCATGTGCT
* * * * * *
2995771 CGATGGTGTTTGACGCAACGGCCCGCACC-AGTGGCCA--AT-TTCTAT
1 -GATGGTGTTCGAGGCAACCGCCAGCACCAAG-GCCCAGCATGTGC--T
* * ** * * * *
2995816 CGATGATGGTCGAGGCAAGAGCCCGTAGCAAGGGCC-GACTTATG-GC-
1 -GATGGTGTTCGAGGCAACCGCCAGCACCAAGGCCCAG-C--ATGTGCT
* * * * * ** *
2995862 GATGGTGCTCGAGCCAACCGTCC-GTACCAAGGCCTACCACATGCC
1 GATGGTGTTCGAGGCAACCG-CCAGCACCAAGGCCCAGCATGTGCT
* * * * *
2995907 GATGGTGTTCGAGGCAACCCCCGGCACCAAGGCCTAGCATATGTT
1 GATGGTGTTCGAGGCAACCGCCAGCACCAAGGCCCAGCATGTGCT
* *
2995952 GACGGTGGTCGAGGCAACCGCCAGCACCAAGGCCCAGCATGTGCT
1 GATGGTGTTCGAGGCAACCGCCAGCACCAAGGCCCAGCATGTGCT
* * * ** * * * *
2995997 GATGGTGTTAGACGTAACCGCTTGCACCAGGGGCCATCTTGTGCT
1 GATGGTGTTCGAGGCAACCGCCAGCACCAAGGCCCAGCATGTGCT
* * * * * * * *
2996042 GATGGTGGTCGAGGTAACCATCC-GTACCAAAGG-TCAGCTTATGCC
1 GATGGTGTTCGAGGCAACC-GCCAGCACC-AAGGCCCAGCATGTGCT
* * * * *** * *
2996087 GATGGTGGTGGAGGCAACCGCTC-GCACCAGGGGCCATTTTTTGTT
1 GATGGTGTTCGAGGCAACCGC-CAGCACCAAGGCCCAGCATGTGCT
** * ** * * * *
2996132 GATTATGGTCGAGGCAAGAGCCCGCACCAAGG-GCTGACTTGTG-T
1 GATGGTGTTCGAGGCAACCGCCAGCACCAAGGCCCAG-CATGTGCT
* * *
2996176 CGATGGTGGTCGAGGCAACCGCCTA-CACCAAAGG-CCGGCATGTGCC
1 -GATGGTGTTCGAGGCAACCGCC-AGCACC-AAGGCCCAGCATGTGCT
* * * * *
2996222 AATGGTGATCGAGGCAACCACCCA-CACC-AGGTCCCAGCTTGTGCC
1 GATGGTGTTCGAGGCAACC-GCCAGCACCAAGG-CCCAGCATGTGCT
*
2996267 GATGGTGGTCGAGGCAA
1 GATGGTGTTCGAGGCAA
2996284 GTGCCCATAC
Statistics
Matches: 415, Mismatches: 108, Indels: 68
0.70 0.18 0.12
Matches are distributed among these distances:
42 1 0.00
43 8 0.02
44 14 0.03
45 370 0.89
46 19 0.05
49 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.19
Consensus pattern (45 bp):
GATGGTGTTCGAGGCAACCGCCAGCACCAAGGCCCAGCATGTGCT
Found at i:2996049 original size:90 final size:88
Alignment explanation
Indices: 2995862--2996163 Score: 203
Period size: 90 Copynumber: 3.4 Consensus size: 88
2995852 GACTTATGGC
* * * * * * * *
2995862 GATGGTGCTCGAGCCAACCGTCCGTACCAAGGCCTACCACATGCCGATGGTGTTCGAGGCAACC-
1 GATGGTGGTCGAGGCAACCG-CCGCACCAAGGCC-AGCATATGCCGATGGTGGTAGACGCAACCG
* * * * * *
2995926 CCCGGCACCA-AGGCCTAGCATATGTT
64 CTC-GCACCAGGGGCC-ATCTTGTGCT
* * * * *
2995952 GACGGTGGTCGAGGCAACCGCCAGCACCAAGGCCCAGCATGTGCTGATGGTGTTAGACGTAACCG
1 GATGGTGGTCGAGGCAACCGCC-GCACCAAGG-CCAGCATATGCCGATGGTGGTAGACGCAACCG
*
2996017 CTTGCACCAGGGGCCATCTTGTGCT
64 CTCGCACCAGGGGCCATCTTGTGCT
* * * * * * *
2996042 GATGGTGGTCGAGGTAACCATCCGTACCAAAGGTCAGCTTATGCCGATGGTGGTGGAGGCAACCG
1 GATGGTGGTCGAGGCAACC-GCCGCACC-AAGGCCAGCATATGCCGATGGTGGTAGACGCAACCG
* * *
2996107 CTCGCACCAGGGGCCATTTTTTGTT
64 CTCGCACCAGGGGCCATCTTGTGCT
** **
2996132 GATTATGGTCGAGGCAAGAGCCCGCACCAAGG
1 GATGGTGGTCGAGGCAACCG-CCGCACCAAGG
2996164 GCTGACTTGT
Statistics
Matches: 164, Mismatches: 41, Indels: 15
0.75 0.19 0.07
Matches are distributed among these distances:
89 6 0.04
90 145 0.88
91 13 0.08
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.20
Consensus pattern (88 bp):
GATGGTGGTCGAGGCAACCGCCGCACCAAGGCCAGCATATGCCGATGGTGGTAGACGCAACCGCT
CGCACCAGGGGCCATCTTGTGCT
Found at i:2996476 original size:11 final size:11
Alignment explanation
Indices: 2996456--2996495 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
2996446 CCTGGGGCAC
2996456 CATCGTCGGAG
1 CATCGTCGGAG
*
2996467 CATTGTCGGAG
1 CATCGTCGGAG
*
2996478 CATCGTCGAAG
1 CATCGTCGGAG
2996489 CATCGTC
1 CATCGTC
2996496 AGAGAACCTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:3006231 original size:159 final size:166
Alignment explanation
Indices: 3005916--3006466 Score: 465
Period size: 171 Copynumber: 3.3 Consensus size: 166
3005906 GCCCACCCGT
* * *
3005916 TCGTTTCGTAGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAG-AT-CAGACCGGA-TAG
1 TCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACAG-CCAGACT-G
* * * *
3005978 AGGGTTCCGAT-AGCAGGAC-CCTTAACGAGATCGACAGCACGCAGAGGGGG--CTGG--GATCC
63 AAGGTT--G-TGAGCAGGACAGC---ACG-GATCGATAGCACGCAGAGGGGGACCAGGCCGATCC
* ** *
3006037 CCGGCTTGTGCATTCTGCCTCTCTGGCCGGTTGAGCGCCCGTACGC
121 CCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGC
* * *
3006083 TCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGTCGGACTGAA
1 TCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACAGCCAGACTGAA
* *
3006148 GG-T-T-A-C-GG-CAGCA-GGATTGATAGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTTGC
65 GGTTGTGAGCAGGACAGCACGGATCGATAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGC
* *
3006205 ACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGC
130 GCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGC
* * * * * **
3006242 TCGTTTCATAGGCTGGCTTAGGCATACGGAGTTCGTT-CCATGTCTAAGC-CCCAGCCAGACTGA
1 TCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCA-GTCTAAGCATACAGCCAGACTGA
* * * * * *
3006305 GGGTTGTGGCAGCAGGACCGGCATCGGGATCGGTAGCACGTAGAGGGGGATCGGGCCGATCCCCG
64 AGGTTGT-G-AGCAGGA-CAGCA-C-GGATCGATAGCACGCAGAGGGGGACCAGGCCGATCCCCG
* * * * * *
3006370 GCTTACGCATTATGCCTCTCTGGCCGACTCAGTGCCTGCACGT
124 GCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGC
3006413 TCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACA
1 TCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACA
3006467 AAGTTCAATC
Statistics
Matches: 309, Mismatches: 49, Indels: 47
0.76 0.12 0.12
Matches are distributed among these distances:
155 5 0.02
156 14 0.05
157 4 0.01
158 16 0.05
159 83 0.27
160 3 0.01
161 3 0.01
162 1 0.00
163 3 0.01
164 1 0.00
165 2 0.01
166 1 0.00
167 48 0.16
168 10 0.03
169 4 0.01
170 14 0.05
171 92 0.30
172 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (166 bp):
TCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACAGCCAGACTGAAG
GTTGTGAGCAGGACAGCACGGATCGATAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCG
CATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGC
Found at i:3013780 original size:45 final size:45
Alignment explanation
Indices: 3013731--3013853 Score: 192
Period size: 45 Copynumber: 2.7 Consensus size: 45
3013721 CATGTGCCTC
* * *
3013731 CACCAAGGGCTAACGCGTGTCGATGGTGGTTGATACGACTACCCG
1 CACCAAGGGCCAGCGTGTGTCGATGGTGGTTGATACGACTACCCG
* *
3013776 CACCAAGGGCCAGCGTGTGCCGATGGTGGTCGATACGACTACCCG
1 CACCAAGGGCCAGCGTGTGTCGATGGTGGTTGATACGACTACCCG
*
3013821 TACCAAGGGCCAGCGTGTGTCGATGGTGGTTGA
1 CACCAAGGGCCAGCGTGTGTCGATGGTGGTTGA
3013854 GGTAACCGCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.20, C:0.26, G:0.34, T:0.20
Consensus pattern (45 bp):
CACCAAGGGCCAGCGTGTGTCGATGGTGGTTGATACGACTACCCG
Found at i:3014138 original size:45 final size:45
Alignment explanation
Indices: 3013909--3014782 Score: 204
Period size: 45 Copynumber: 19.4 Consensus size: 45
3013899 TGACATATGC
* * * *
3013909 CGATGGTGTTCGAGGCAACCACCCGCACCA-AGGCCCGACATGTGT
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAG-TATGTGT
* * * * * *
3013954 CGATGGTGTTCGACGCAACCGCTCGTACCAGGGGCCA-TCTTCTGC
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGT-ATGTGT
* * * ** *
3013999 CAATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGCC-GCCT-TGTGT
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAG--TATGTGT
* * * * * * * * * *
3014044 CGATAGTGGTCGAGGCAACCGTCTGTACCA-AGGCTTAGCACGTGC
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGC-CAGTATGTGT
* *
3014089 CGATGGTGTTCGAGGCAAGCGCCCGTACCAGGGGCCAGTATGTGT
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGTATGTGT
* * * * *
3014134 CGATGGTGTTTGATGCAACTGCCCGCACCAGGGGCCA-TCT-TCT
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGTATGTGT
* * * ** * * * *
3014177 GCTGATGGTGGTCAAGGGAAGAGCCCGCACCAAGGGTCGGCT-TGTGC
1 -C-GATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAG-TATGTGT
* * * * * * * **
3014224 CGATGGTGGTCGAGGTAATCGCCCGCACTAAGGCCCAGCACATGT
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGTATGTGT
** * * * * * *
3014269 TAATGGTGTTCAAGGCAACCGTCTGCACCAAGGGCCAGCATGTGC
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGTATGTGT
** * * * * * * *
3014314 CGATGGTGTTTAACGCAATCACCCACACCAGAGGCCA-TCTTGTGC
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGT-ATGTGT
* * ** ** * *
3014359 CGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGATCGACTTATGT-T
1 CGATGGTGTTCGAGGCAACCGCCCGCACC-AGGGGCCA-GTATGTGT
* * * * ** ** * *
3014405 -GATGGTGCTCAAGGTAATCC-TCCATACCAACGCCCAGTACGTGT
1 CGATGGTGTTCGAGGCAA-CCGCCCGCACCAGGGGCCAGTATGTGT
* * * * * *
3014449 TGATGGTGTTCAACGCAACTGCCCGCACTAGGGGCCA-TCTTGTGT
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGT-ATGTGT
* * * * * * * *
3014494 CAATAGTGGTCGAGGCAATCACCCGCACCAAGGGTCGGCT-TGTGT
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAG-TATGTGT
* * ** * *
3014539 AGATGGTGGTCGAGGCAACCGCTTGCACCAGGGGCCA-TCT-TCT
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGTATGTGT
* * * ** * * *
3014582 ACCGATTGTGGTCAAGGCAAAAGCCCGTACCAAGGGCCAGCT-TGTGC
1 --CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAG-TATGTGT
* * * * *
3014629 CGATGGTGCTCGAGGCAACCGCTCGCACCAGGAGCCA-TCT-TCT
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGTATGTGT
* * * * * * *
3014672 ACTGATGGTGGTCGAGGCAACTGCCTGCACCAAGGCCCAGCATGTGC
1 -C-GATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGTATGTGT
* * * ** * * *
3014719 CGATGGTGTTTGATGTAACCGCCTACACCAGGAGCCA-TCTTGTAT
1 CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGT-ATGTGT
* *
3014764 CGATGGTGGTCAAGGCAAC
1 CGATGGTGTTCGAGGCAAC
3014783 TGCTTGCACC
Statistics
Matches: 573, Mismatches: 218, Indels: 76
0.66 0.25 0.09
Matches are distributed among these distances:
43 11 0.02
44 15 0.03
45 519 0.91
46 17 0.03
47 10 0.02
48 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.20
Consensus pattern (45 bp):
CGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGTATGTGT
Found at i:3014387 original size:90 final size:90
Alignment explanation
Indices: 3013906--3014391 Score: 309
Period size: 90 Copynumber: 5.4 Consensus size: 90
3013896 GCTTGACATA
* * * * * *
3013906 TGCCGATGGTGTTCGAGGCAACCA-CCCGCACCAA-GGCCCGACATGTGTCGATGGTGTTCGACG
1 TGCCGATGGTGGTCAAGGCAA-GAGCCCGCACCAAGGGCCAG-CATGTGCCGATGGTGTTTGACG
* * * * *
3013969 CAACCGCTCGTACCAGGGGCCATCTTC
64 CAATCGCCCGCACCAGAGGCCATCTTG
* * * * * * *
3013996 TGCCAATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGCC-GCCTTGTGTCGATAGTGGTCGAGGC
1 TGCCGATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGCCAG-CATGTGCCGATGGTGTTTGACGC
* * * * * * **
3014060 AACCGTCTGTACCA-AGGCTTAGCACG
65 AATCGCCCGCACCAGAGGC-CATCTTG
* * * * * * * *
3014086 TGCCGATGGTGTTCGAGGCAAGCGCCCGTACCAGGGGCCAGTATGTGTCGATGGTGTTTGATGCA
1 TGCCGATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTTGACGCA
* *
3014151 A-CTGCCCGCACCAGGGGCCATCTTC
66 ATC-GCCCGCACCAGAGGCCATCTTG
* * * * * * * * *
3014176 TGCTGATGGTGGTCAAGGGAAGAGCCCGCACCAAGGGTCGGCTTGTGCCGATGGTGGTCGAGGTA
1 TGCCGATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTTGACGCA
* * ***
3014241 ATCGCCCGCACTA-AGGCCCAGCACA
66 ATCGCCCGCACCAGAGG-CCATCTTG
*** * ** * * *
3014266 TGTTAATGGTGTTCAAGGCAACCGTCTGCACCAAGGGCCAGCATGTGCCGATGGTGTTTAACGCA
1 TGCCGATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTTGACGCA
* *
3014331 ATCACCCACACCAGAGGCCATCTTG
66 ATCGCCCGCACCAGAGGCCATCTTG
* *
3014356 TGCCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGG
1 TGCCGATGGTGGTCAAGGCAAGAGCCCGCACCAAGG
3014392 ATCGACTTAT
Statistics
Matches: 293, Mismatches: 94, Indels: 18
0.72 0.23 0.04
Matches are distributed among these distances:
89 7 0.02
90 274 0.94
91 12 0.04
ACGTcount: A:0.21, C:0.28, G:0.32, T:0.19
Consensus pattern (90 bp):
TGCCGATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTTGACGCA
ATCGCCCGCACCAGAGGCCATCTTG
Found at i:3014404 original size:135 final size:134
Alignment explanation
Indices: 3014217--3014803 Score: 359
Period size: 135 Copynumber: 4.4 Consensus size: 134
3014207 CAAGGGTCGG
* * ** *
3014217 CTTGTGCCGATGGTGGTCGAGGTAATC-GCCCGCACTAAGGCCCAGCAC--ATGTTAATGGTGTT
1 CTTGTGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGATC-G-ACTTATGTTAATGGTGGT
* *
3014279 CAAGGCAACCGTCTGCACCAAGGGCCAGCATGTGCCGATGGTGTTTAACGCAATCACCCACACCA
63 CAAGGCAACCGTCTGCACCAAGGCCCAGCATGTGCCGATGGTGTTCAACGCAA-CACCCACACCA
3014344 GAGGCCAT
127 GAGGCCAT
* * * *
3014352 CTTGTGCCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGATCGACTTATGTTGATGGTGCTCAA
1 CTTGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGATCGACTTATGTTAATGGTGGTCAA
* *** * * * ** * * * *
3014417 GGTAATCC-TCCATACCAACGCCCAGTACGTGTTGATGGTGTTCAACGCAACTGCCCGCACTAGG
66 GGCAA-CCGTCTGCACCAAGGCCCAGCATGTGCCGATGGTGTTCAACGCAAC-ACCCACACCAGA
3014481 GGCCAT
129 GGCCAT
* * * * * *
3014487 CTTGTGTCAATAGTGGTCGAGGCAATCA-CCCGCACCAAGGGTCGGCTTGTG-TAGATGGTGGTC
1 CTTGTGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGATCGACTTATGTTA-ATGGTGGTC
* * * * * * * * * * * **
3014550 GAGGCAACCG-CTTGCACCAGGGGCCATCTTCTACCGATTGTGGTCAAGGCAAAAGCCCGTACCA
64 AAGGCAACCGTC-TGCACCAAGGCCCAGCATGTGCCGATGGTGTTCAACGCAACA-CCCACACCA
*
3014614 -AGGGCCAG
127 GA-GGCCAT
* * * * * * ** * *
3014622 CTTGTGCCGATGGTGCTCGAGGCAACCGCTCGCACC-AGGAGCCATCTTCTACTGATGGTGGTCG
1 CTTGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGATCGA-CTTATGTTAATGGTGGTCA
* * ** * *
3014686 AGGCAACTGCCTGCACCAAGGCCCAGCATGTGCCGATGGTGTTTGATGTAAC-CGCCTACACCAG
65 AGGCAACCGTCTGCACCAAGGCCCAGCATGTGCCGATGGTGTTCAACGCAACAC-CC-ACACCAG
3014750 -GAGCCAT
128 AG-GCCAT
** * * ** *
3014757 CTTGTATCGATGGTGGTCAAGGCAACTGCTTGCACCAAGGGTCGACT
1 CTTGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGATCGACT
3014804 AGTGTCGATG
Statistics
Matches: 337, Mismatches: 95, Indels: 40
0.71 0.20 0.08
Matches are distributed among these distances:
133 3 0.01
134 14 0.04
135 310 0.92
136 10 0.03
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (134 bp):
CTTGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGATCGACTTATGTTAATGGTGGTCAA
GGCAACCGTCTGCACCAAGGCCCAGCATGTGCCGATGGTGTTCAACGCAACACCCACACCAGAGG
CCAT
Found at i:3014411 original size:180 final size:179
Alignment explanation
Indices: 3013910--3014494 Score: 607
Period size: 180 Copynumber: 3.3 Consensus size: 179
3013900 GACATATGCC
* * * *
3013910 GATGGTGTTCGAGGCAACCACCCGCACCAA-GGCCCGACATGTGTCGATGGTGTTCGACGCAACC
1 GATGGTGTTCAAGGCAACCGCCCGCACCAAGGGCCAG-CATGTGTCGATGGTGTTTGACGCAA-C
* * * * *
3013974 GCTCGTACCAGGGGCCATCTTCTGCCAATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGCCGCCT
64 GCCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGTCGACT
* * * * * ** **
3014039 TGTGTCGATAGTGGTCGAGGCAACCGTCTGTACCAAGGCTTAGCACGTGCC
129 TGTGTCGATGGTGGTCGAGGTAATCGCCCGTACCAAGGCCCAGCACGTGTT
* * * * * *
3014090 GATGGTGTTCGAGGCAAGCGCCCGTACCAGGGGCCAGTATGTGTCGATGGTGTTTGATGCAACTG
1 GATGGTGTTCAAGGCAACCGCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTTGACGCAAC-G
* * *
3014155 CCCGCACCAGGGGCCATCTTCTGCTGATGGTGGTCAAGGGAAGAGCCCGCACCAAGGGTCGGCTT
65 CCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGTCGACTT
* * * *
3014220 GTGCCGATGGTGGTCGAGGTAATCGCCCGCACTAAGGCCCAGCACATGTT
130 GTGTCGATGGTGGTCGAGGTAATCGCCCGTACCAAGGCCCAGCACGTGTT
* * * * * *
3014270 AATGGTGTTCAAGGCAACCGTCTGCACCAAGGGCCAGCATGTGCCGATGGTGTTTAACGCAATCA
1 GATGGTGTTCAAGGCAACCGCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTTGACGCAA-CG
* * * * * *
3014335 CCCACACCAGAGGCCATCTTGTGCCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGATCGACTT
65 CCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGTCGACTT
* * * * * * *
3014400 ATGTTGATGGTGCTCAAGGTAATC-CTCCATACCAACGCCCAGTACGTGTT
130 GTGTCGATGGTGGTCGAGGTAATCGC-CCGTACCAAGGCCCAGCACGTGTT
* * * * * *
3014450 GATGGTGTTCAACGCAACTGCCCGCACTAGGGGCCATCTTGTGTC
1 GATGGTGTTCAAGGCAACCGCCCGCACCAAGGGCCAGCATGTGTC
3014495 AATAGTGGTC
Statistics
Matches: 332, Mismatches: 69, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
179 2 0.01
180 324 0.98
181 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (179 bp):
GATGGTGTTCAAGGCAACCGCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTTGACGCAACGC
CCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGTCGACTTG
TGTCGATGGTGGTCGAGGTAATCGCCCGTACCAAGGCCCAGCACGTGTT
Found at i:3014593 original size:90 final size:90
Alignment explanation
Indices: 3014499--3014781 Score: 300
Period size: 90 Copynumber: 3.1 Consensus size: 90
3014489 TGTGTCAATA
* * * * * *
3014499 GTGGTCGAGGCAATCA-CCCGCACCAAGGGTCGGCTTGTGTAGATGGTGGTCGAGGCAACCGCTT
1 GTGGTCGAGGCAA-AAGCCCGCACCAAGGGCCAGCTTGTGCAGATGGTGCTCGAGGCAACCGCTC
* *
3014563 GCACCAGGGGCCATCTTCTACCGATT
65 GCACCAGGAGCCATCTTCTACCGATG
* * *
3014589 GTGGTCAAGGCAAAAGCCCGTACCAAGGGCCAGCTTGTGCCGATGGTGCTCGAGGCAACCGCTCG
1 GTGGTCGAGGCAAAAGCCCGCACCAAGGGCCAGCTTGTGCAGATGGTGCTCGAGGCAACCGCTCG
*
3014654 CACCAGGAGCCATCTTCTACTGATG
66 CACCAGGAGCCATCTTCTACCGATG
** * * * * * * * *
3014679 GTGGTCGAGGCAACTGCCTGCACCAAGGCCCAGCATGTGCCGATGGTGTTTGATGTAACCGC-CT
1 GTGGTCGAGGCAAAAGCCCGCACCAAGGGCCAGCTTGTGCAGATGGTGCTCGAGGCAACCGCTC-
* * *
3014743 ACACCAGGAGCCATCTTGTATCGATG
65 GCACCAGGAGCCATCTTCTACCGATG
*
3014769 GTGGTCAAGGCAA
1 GTGGTCGAGGCAA
3014782 CTGCTTGCAC
Statistics
Matches: 163, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
89 2 0.01
90 161 0.99
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (90 bp):
GTGGTCGAGGCAAAAGCCCGCACCAAGGGCCAGCTTGTGCAGATGGTGCTCGAGGCAACCGCTCG
CACCAGGAGCCATCTTCTACCGATG
Found at i:3014782 original size:90 final size:89
Alignment explanation
Indices: 3014540--3014796 Score: 309
Period size: 90 Copynumber: 2.9 Consensus size: 89
3014530 GGCTTGTGTA
* * * * **
3014540 GATGGTGGTCGAGGCAACCGCTTGCACCAGGGGCCATCTTCTACCGATTGTGGTCAAGGCAAAAG
1 GATGGTGCTCGAGGCAACCGCCTGCACCAGGAGCCATCTTCTA-CGATGGTGGTCAAGGCAACTG
* * * *
3014605 CCCGTACCAAGGGCCAGCTTGTGCC
65 CCTGCACCAAGGCCCAGCATGTGCC
*
3014630 GATGGTGCTCGAGGCAACCG-CTCGCACCAGGAGCCATCTTCTACTGATGGTGGTCGAGGCAACT
1 GATGGTGCTCGAGGCAACCGCCT-GCACCAGGAGCCATCTTCTAC-GATGGTGGTCAAGGCAACT
3014694 GCCTGCACCAAGGCCCAGCATGTGCC
64 GCCTGCACCAAGGCCCAGCATGTGCC
* * * * * *
3014720 GATGGTGTTTGATGTAACCGCCTACACCAGGAGCCATCTTGTATCGATGGTGGTCAAGGCAACTG
1 GATGGTGCTCGAGGCAACCGCCTGCACCAGGAGCCATCTTCTA-CGATGGTGGTCAAGGCAACTG
*
3014785 CTTGCACCAAGG
65 CCTGCACCAAGG
3014797 GTCGACTAGT
Statistics
Matches: 144, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
89 2 0.01
90 139 0.97
91 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.20
Consensus pattern (89 bp):
GATGGTGCTCGAGGCAACCGCCTGCACCAGGAGCCATCTTCTACGATGGTGGTCAAGGCAACTGC
CTGCACCAAGGCCCAGCATGTGCC
Found at i:3014813 original size:90 final size:90
Alignment explanation
Indices: 3014518--3014815 Score: 293
Period size: 90 Copynumber: 3.3 Consensus size: 90
3014508 GCAATCACCC
* * ** * * *
3014518 GCACCAAGGGT-CGGCTTGTGTAGATGGTGGTCGAGGCAACCGCTTGCACCAGGGGCCATCTTCT
1 GCACCAAGGGTCCAGCTAGTGCCGATGGTGCTCGAGGCAACCGCCTGCACCAGGAGCCATCTTCT
* ** *
3014582 ACCGATTGTGGTCAAGGCAAAAGCCC
66 A-CGATGGTGGTCAAGGCAACTGCCT
* *
3014608 GTACCAAGGG-CCAGCTTGTGCCGATGGTGCTCGAGGCAACCG-CTCGCACCAGGAGCCATCTTC
1 GCACCAAGGGTCCAGCTAGTGCCGATGGTGCTCGAGGCAACCGCCT-GCACCAGGAGCCATCTTC
*
3014671 TACTGATGGTGGTCGAGGCAACTGCCT
65 TAC-GATGGTGGTCAAGGCAACTGCCT
* * * * * * *
3014698 GCACCAA-GGCCCAGC-ATGTGCCGATGGTGTTTGATGTAACCGCCTACACCAGGAGCCATCTTG
1 GCACCAAGGGTCCAGCTA-GTGCCGATGGTGCTCGAGGCAACCGCCTGCACCAGGAGCCATCTTC
*
3014761 TATCGATGGTGGTCAAGGCAACTGCTT
65 TA-CGATGGTGGTCAAGGCAACTGCCT
* *
3014788 GCACCAAGGGTCGA-CTAGTGTCGATGGT
1 GCACCAAGGGTCCAGCTAGTGCCGATGGT
3014816 ATGGCCCAAC
Statistics
Matches: 174, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
89 4 0.02
90 162 0.93
91 8 0.05
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (90 bp):
GCACCAAGGGTCCAGCTAGTGCCGATGGTGCTCGAGGCAACCGCCTGCACCAGGAGCCATCTTCT
ACGATGGTGGTCAAGGCAACTGCCT
Found at i:3014906 original size:45 final size:45
Alignment explanation
Indices: 3014828--3015209 Score: 279
Period size: 45 Copynumber: 8.5 Consensus size: 45
3014818 GGCCCAACAC
3014828 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTT
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTT
* * * * ** * * * *
3014873 TTACCGATGGTGGTT-GAGGTAACCACCTACACCAAGGCCCAGCAT
1 GTGCCGATGGT-GTTCGAGGCAACCGCCCGCACCAGGGGCCATCTT
* * *
3014918 GTGCTGATGGTGTTGGACGCAACCGCCCGCACCAGGGGCCATCTT
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTT
* * ** * * *
3014963 GTGCCGATGGTGGTCGAGGCAACCGCTCGCAGTAAGGGTCGA-CAT
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCA-CCAGGGGCCATCTT
* * * * * *
3015008 GTGCCGATGGTGTTCGAGGCAATCGCCTGTACCA-AGG-CTTGGCAT
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAT--CTT
* * * * * *
3015053 GTGTCGATGGTGTTCGATGCAACTGTCCACACCAGGGGCCATTTT
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTT
* * * * * ** *
3015098 GTGTCGATGGTGGTCCAGGCAACCACCCGCACCAAGGGCCGGCAT
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTT
* * *
3015143 GTGTCGATGGTGATCGAGGCAACCGCCCGCACCA-GGGCCTAGCTT
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCC-ATCTT
* *
3015188 ATGCCGATGGTGGTCGAGGCAA
1 GTGCCGATGGTGTTCGAGGCAA
3015210 GTGCCCGTAC
Statistics
Matches: 253, Mismatches: 75, Indels: 18
0.73 0.22 0.05
Matches are distributed among these distances:
43 1 0.00
44 9 0.04
45 230 0.91
46 11 0.04
47 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (45 bp):
GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTT
Found at i:3014906 original size:113 final size:113
Alignment explanation
Indices: 3014705--3014909 Score: 257
Period size: 113 Copynumber: 1.8 Consensus size: 113
3014695 CCTGCACCAA
* * * * * * *
3014705 GGCCCAGCATGTGCCGATGGTGTTTGATGTAACCGCCTACACCAGGAGCCATCTTGTATCGATGG
1 GGCCCAACACGTGCCGATGGTGTTCGAGGCAACCGCCCACACCAGGAGCCATCTTGTACCGATGG
** * *
3014770 TGGTCAAGGCAACTGCTTGCACCAAGGGTCGACTAGTGTCGATGGTAT
66 TGGTCAAGGCAACCACCTACACCAAGGGTCGACTAGTGTCGATGGTAT
* * *
3014818 GGCCCAACACGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTTTACCGATGG
1 GGCCCAACACGTGCCGATGGTGTTCGAGGCAACCGCCCACACCAGGAGCCATCTTGTACCGATGG
** *
3014883 TGGTTGAGGTAACCACCTACACCAAGG
66 TGGTCAAGGCAACCACCTACACCAAGG
3014910 CCCAGCATGT
Statistics
Matches: 75, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
113 75 1.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (113 bp):
GGCCCAACACGTGCCGATGGTGTTCGAGGCAACCGCCCACACCAGGAGCCATCTTGTACCGATGG
TGGTCAAGGCAACCACCTACACCAAGGGTCGACTAGTGTCGATGGTAT
Found at i:3014974 original size:203 final size:203
Alignment explanation
Indices: 3014625--3015018 Score: 547
Period size: 203 Copynumber: 1.9 Consensus size: 203
3014615 GGGCCAGCTT
* *
3014625 GTGCCGATGGTGCTCGAGGCAACCGCTCGCACCAGGAGCCATCTTCTACTGATGGTGGTCGAGGC
1 GTGCCGATGGTGCTCGAGGCAACCGCCCGCACCAGGAGCCATCTTCTACCGATGGTGGTCGAGGC
** * * * * *
3014690 AACTGCCTGCACCAAGGCCCAGCATGTGCCGATGGTGTTTGATGTAACCGCCTACACCAGGAGCC
66 AACCACCTACACCAAGGCCCAGCATGTGCCGATGGTGTTGGACGCAACCGCCCACACCAGGAGCC
* * * *
3014755 ATCTTGTATCGATGGTGGTCAAGGCAACTGCTTGCACCAAGGGTCGAC-TAGTGTCGATGGTATG
131 ATCTTGTACCGATGGTGGTCAAGGCAACCGCTCGCACCAAGGGTCGACAT-GTGCCGATGGTATG
3014819 GCCCAACAC
195 GCCCAACAC
* * * * *
3014828 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTTTACCGATGGTGGTTGAGGT
1 GTGCCGATGGTGCTCGAGGCAACCGCCCGCACCAGGAGCCATCTTCTACCGATGGTGGTCGAGGC
* * *
3014893 AACCACCTACACCAAGGCCCAGCATGTGCTGATGGTGTTGGACGCAACCGCCCGCACCAGGGGCC
66 AACCACCTACACCAAGGCCCAGCATGTGCCGATGGTGTTGGACGCAACCGCCCACACCAGGAGCC
* * **
3014958 ATCTTGTGCCGATGGTGGTCGAGGCAACCGCTCGCAGTAAGGGTCGACATGTGCCGATGGT
131 ATCTTGTACCGATGGTGGTCAAGGCAACCGCTCGCACCAAGGGTCGACATGTGCCGATGGT
3015019 GTTCGAGGCA
Statistics
Matches: 165, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
203 164 0.99
204 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.20
Consensus pattern (203 bp):
GTGCCGATGGTGCTCGAGGCAACCGCCCGCACCAGGAGCCATCTTCTACCGATGGTGGTCGAGGC
AACCACCTACACCAAGGCCCAGCATGTGCCGATGGTGTTGGACGCAACCGCCCACACCAGGAGCC
ATCTTGTACCGATGGTGGTCAAGGCAACCGCTCGCACCAAGGGTCGACATGTGCCGATGGTATGG
CCCAACAC
Found at i:3015196 original size:135 final size:135
Alignment explanation
Indices: 3014828--3015209 Score: 361
Period size: 135 Copynumber: 2.8 Consensus size: 135
3014818 GGCCCAACAC
* * * * * * * * *
3014828 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCC-ATCTTTTACCGATGGTGGTTGAGG
1 GTGCCGATGGTGGTCCAGGCAACCACCCGCACCAAGGGCCGA-CATGTGCCGATGGTGATCGAGG
* * ** * * * * *
3014892 TAACCACCTACACCAAGGCCCAGCATGTGCTGATGGTGTTGGACGCAACCGCCCGCACCAGGGGC
65 CAACCGCCCGCACCAAGGCCTAGCATATGCCGATGGTGTTCGACGCAACCGCCCACACCAGGGGC
3014957 CATCTT
130 CATCTT
* * * ** * *
3014963 GTGCCGATGGTGGTCGAGGCAACCGCTCGCAGTAAGGGTCGACATGTGCCGATGGTGTTCGAGGC
1 GTGCCGATGGTGGTCCAGGCAACCACCCGCACCAAGGGCCGACATGTGCCGATGGTGATCGAGGC
* * * * * * * * * *
3015028 AATCGCCTGTACCAAGGCTTGGCATGTGTCGATGGTGTTCGATGCAACTGTCCACACCAGGGGCC
66 AACCGCCCGCACCAAGGCCTAGCATATGCCGATGGTGTTCGACGCAACCGCCCACACCAGGGGCC
*
3015093 ATTTT
131 ATCTT
* * *
3015098 GTGTCGATGGTGGTCCAGGCAACCACCCGCACCAAGGGCCGGCATGTGTCGATGGTGATCGAGGC
1 GTGCCGATGGTGGTCCAGGCAACCACCCGCACCAAGGGCCGACATGTGCCGATGGTGATCGAGGC
* * * *
3015163 AACCGCCCGCACCAGGGCCTAGCTTATGCCGATGGTGGTCGAGGCAA
66 AACCGCCCGCACCAAGGCCTAGCATATGCCGATGGTGTTCGACGCAA
3015210 GTGCCCGTAC
Statistics
Matches: 198, Mismatches: 48, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
135 197 0.99
136 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (135 bp):
GTGCCGATGGTGGTCCAGGCAACCACCCGCACCAAGGGCCGACATGTGCCGATGGTGATCGAGGC
AACCGCCCGCACCAAGGCCTAGCATATGCCGATGGTGTTCGACGCAACCGCCCACACCAGGGGCC
ATCTT
Found at i:3016062 original size:26 final size:26
Alignment explanation
Indices: 3016033--3016085 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3016023 GTTGACTTAG
* *
3016033 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
3016059 GCATACGAAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
3016085 G
1 G
3016086 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:3024087 original size:135 final size:134
Alignment explanation
Indices: 3023924--3024279 Score: 300
Period size: 134 Copynumber: 2.6 Consensus size: 134
3023914 GAGGCAAGAG
* * *** * *
3023924 CCCGTACCAAGGGCCAGCTTGTGTCGATGGGGGTCAAGGTAACCACCCACACCAAGGGCCATCTT
1 CCCGCACCAAGGGCCAGCCTGCACCGATGGGGCTCAAGGCAACCACCCACACCAAGGGCCATCTT
** * * * * * *
3023989 CTGTCGATGGTGGTCGAGGTAACCGCCTGCACTAAGGCCCAACATGTGCCGATGGTGTTCAAGGC
66 CTACCGATAGTGGTCGAGGCAACCACC-GCACCAAGACCCAACACGTGCCGATGGTGTTCAAGGC
3024054 AACCA
130 AACCA
* ** *** *
3024059 CCCGCACCAAGGGCCAGCCTGCACCGATGGTGCTTGAGGCAATTGCCCACACCAAGGGCCATTTT
1 CCCGCACCAAGGGCCAGCCTGCACCGATGGGGCTCAAGGCAACCACCCACACCAAGGGCCATCTT
* * *
3024124 TTACCGATAGTGGTCGAGGCAACCACCGTACCAAGACCCAACACGTGCTGATGGTGTTCAAGGCA
66 CTACCGATAGTGGTCGAGGCAACCACCGCACCAAGACCCAACACGTGCCGATGGTGTTCAAGGCA
**
3024189 ACTG
131 ACCA
* * * * * * * * ** * * ** *
3024193 CTCGTACCAGGGGCCAACATGTACCGATGGTGTTTGACGTAACTGCTCACACC-AGAGGCCATCT
1 CCCGCACCAAGGGCCAGCCTGCACCGATGGGGCTCAAGGCAACCACCCACACCAAG-GGCCATCT
*
3024257 TCTACCGATGGTGGTCGAGGCAA
65 TCTACCGATAGTGGTCGAGGCAA
3024280 GAGCCCACAC
Statistics
Matches: 179, Mismatches: 41, Indels: 3
0.80 0.18 0.01
Matches are distributed among these distances:
133 2 0.01
134 105 0.59
135 72 0.40
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (134 bp):
CCCGCACCAAGGGCCAGCCTGCACCGATGGGGCTCAAGGCAACCACCCACACCAAGGGCCATCTT
CTACCGATAGTGGTCGAGGCAACCACCGCACCAAGACCCAACACGTGCCGATGGTGTTCAAGGCA
ACCA
Found at i:3024219 original size:134 final size:135
Alignment explanation
Indices: 3023969--3024279 Score: 374
Period size: 134 Copynumber: 2.3 Consensus size: 135
3023959 AAGGTAACCA
** * * * * *
3023969 CCCACACCAAGGGCCATCTTCTGTCGATGGTGGTCGAGGTAACCGCCTGCACTAAGGCCCAACAT
1 CCCACACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCACCTGCACCAAGACCCAACAC
* * *
3024034 GTGCCGATGGTGTTCAAGGCAACCACCCGCACCAAGGGCCAGCCTGCACCGATGGTGCTTGAGGC
66 GTGCCGATGGTGTTCAAGGCAACCACCCGCACCAAGGGCCAACATGCACCGATGGTGCTTGACGC
*
3024099 AATTG
131 AACTG
* * * *
3024104 CCCACACCAAGGGCCATTTTTTACCGATAGTGGTCGAGGCAACCACC-GTACCAAGACCCAACAC
1 CCCACACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCACCTGCACCAAGACCCAACAC
* ** * * * * * *
3024168 GTGCTGATGGTGTTCAAGGCAACTGCTCGTACCAGGGGCCAACATGTACCGATGGTGTTTGACGT
66 GTGCCGATGGTGTTCAAGGCAACCACCCGCACCAAGGGCCAACATGCACCGATGGTGCTTGACGC
3024233 AACTG
131 AACTG
*
3024238 CTCACACC-AGAGGCCATCTTCTACCGATGGTGGTCGAGGCAA
1 CCCACACCAAG-GGCCATCTTCTACCGATGGTGGTCGAGGCAA
3024280 GAGCCCACAC
Statistics
Matches: 147, Mismatches: 28, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
133 2 0.01
134 105 0.71
135 40 0.27
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (135 bp):
CCCACACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCACCTGCACCAAGACCCAACAC
GTGCCGATGGTGTTCAAGGCAACCACCCGCACCAAGGGCCAACATGCACCGATGGTGCTTGACGC
AACTG
Found at i:3024860 original size:45 final size:45
Alignment explanation
Indices: 3023902--3025328 Score: 519
Period size: 45 Copynumber: 31.8 Consensus size: 45
3023892 CCATCTTCTA
* * *
3023902 CCGATAGTGGTCGAGGCAAGAGCCCGTACCAAGGGCCAGCTTGTG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * * * * * *
3023947 TCGATGGGGGTCAAGGTAACCA-CCCACACCAAGGGCCATCTTCTG
1 CCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTG
* * * * * * * *
3023992 TCGATGGTGGTCGAGGTAACCGCCTGCACTAAGGCCCAACATGTG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * * **
3024037 CCGATGGTGTTCAAGGCAACCA-CCCGCACCAAGGGCCAGCCTGCA
1 CCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTG
* * ** * ** * *
3024082 CCGATGGTGCTTGAGGCAATTGCCCACACCAAGGGCCATTTTTTA
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * ** * **
3024127 CCGATAGTGGTCGAGGCAAC--CACCGTACCAAGACCCAACACGTG
1 CCGATGGTGGTCGAGGCAACAGC-CCGCACCAAGGGCCAGCTTGTG
* * * * * * * * * *
3024171 CTGATGGTGTTCAAGGCAACTGCTCGTACCAGGGGCCAACATGTA
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * * * * * * * * *
3024216 CCGATGGTGTTTGACGTAACTGCTCACACC-AGAGGCCATCTTCTA
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAG-GGCCAGCTTGTG
* * * *
3024261 CCGATGGTGGTCGAGGCAAGAGCCCACACCAAGGGTCAGCTTGTA
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * * * *
3024306 TCGATGGTGGTCGAGGCAATC-GCCCGCACTAAGGGCCATCTTCTA
1 CCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTG
* * * * * ***
3024351 TCGATGGTGGTCGAGGCAACCGCTCGGACCAAGGCCCAGCACATG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * * * *
3024396 CCGATGGTGTTCGAGGTAACCA-CCCACACCAGGGGCCAGCATGTG
1 CCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTG
* * * ** * * *
3024441 TCGATGGTGTTCGACGCAACCA-CCCATACCAGGGGCCATCTTCTG
1 CCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTG
* *
3024486 CCGATGGTGGTCGAGGCAAGAGCCTGCACCAAGGGCCAGCTTGTG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * * *
3024531 CCGATGGTGCTCGAGGCAACCGTCCGCACCAA-GGCCTAGTACATGT-
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC-AG--CTTGTG
* * * * *
3024577 -CGATGGTGTTCGAGGCAACCA-CCTGTACCAA-GGCACAGCATGTA
1 CCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGC-CAGCTTGTG
* * ** * * * * *
3024621 CGGATGGTGTTCGACACAATC-GCCTGCACCAGGGGCTATCTTATG
1 CCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTG
* * * * * *
3024666 CTGATGGTGGCCGAGGCAACCGCCCACACCAAGGGCCATCTTCTG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
** ** ** * * * ** * * *
3024711 GTGATTATGGTTAAGCCAAGAGTCTAC-CCGAATGGTCGGCTTGTG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACC-AAGGGCCAGCTTGTG
* * ** * * *
3024756 CCGATGGTGCTCGAGGCAACCGCCCATACCAAGGGCCACCTTCTA
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * *
3024801 TCGATTGTGGTCGAGGCAAGAGCCCGCACCAAGGGCCAGCTTGTG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * * * * ** *
3024846 CCGATGGTGCTCGAGGTAACCA-TCTGCACCAGGGGCCATTTTTTG
1 CCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTG
* * * * ***
3024891 CCAATGGTGGTCGAGGTACCA-CCCGCACCAAGGCCCAGCAAATG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * ** * * *
3024935 CCAATGGTGTTCGAGGCAATC-GCCCATACCAAGGCCCAACATGTG
1 CCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTG
* * * * *
3024980 CCGATGGTGTTCGACGTAACCGCCCGCACCAAGGGCCATCTTGTG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * * * * * *
3025025 CCGATGGTGGTTGAGGTAACCGCCCGTACCAAAGGTC-GGTTAGTG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTT-GTG
* * * * * * * * * * ***
3025070 TCGATGGTGCTTGAGGTAACCGTCAGTACCAAGGCCCAACACATG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
* * * * * * * *
3025115 CCAATCGTGTTCGAGGTAACCA-CCCGCACCAAGGGTCATCTTCTA
1 CCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTG
* * * * * *
3025160 CCGATGGTGGTTGAGACAATCA-TCTGTACCAAGGCCCAG-TATGTG
1 CCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCT-TGTG
* * * * * * * *
3025205 CCGATGATGTTTGATGCAACTGCCTGCATC--GGGCACCATCTTGTG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGG--CCAGCTTGTG
* * **
3025250 TCGATGGTGGTCGAGGTAATTGCCCGCACCAAGGGCCAG-TTGGTG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTT-GTG
* * * * *
3025295 CCGATGGTGCTCAAGGCAACGGCCCACACAAAGG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGG
3025329 CCCGACACGT
Statistics
Matches: 1015, Mismatches: 327, Indels: 80
0.71 0.23 0.06
Matches are distributed among these distances:
43 8 0.01
44 78 0.08
45 906 0.89
46 16 0.02
47 7 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (45 bp):
CCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTG
Found at i:3025341 original size:45 final size:44
Alignment explanation
Indices: 3025292--3025404 Score: 118
Period size: 45 Copynumber: 2.5 Consensus size: 44
3025282 GGGCCAGTTG
3025292 GTGCCGATGGTGCTCAAGGCAACGGCCCACACAAAGGCCCGACAC
1 GTGCCGATGGTGCTCAAGGCAAC-GCCCACACAAAGGCCCGACAC
* * * * ** * *
3025337 GTGCCAATGATGTTCGAGGCAATCGCCTGCACCAAGGCTCGACAC
1 GTGCCGATGGTGCTCAAGGCAA-CGCCCACACAAAGGCCCGACAC
* *
3025382 GTGCCGATAGTGGTCAAGGCAAC
1 GTGCCGATGGTGCTCAAGGCAAC
3025405 CACCAATACC
Statistics
Matches: 54, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
44 1 0.02
45 52 0.96
46 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.29, T:0.14
Consensus pattern (44 bp):
GTGCCGATGGTGCTCAAGGCAACGCCCACACAAAGGCCCGACAC
Found at i:3034317 original size:45 final size:45
Alignment explanation
Indices: 3034197--3034321 Score: 146
Period size: 45 Copynumber: 2.8 Consensus size: 45
3034187 ACGGCATGCG
*
3034197 CCCGCACCAAGGGCCAACGCA--TGCCGATGGTGGTCGATGCAACTA
1 CCCGCACCAAGGGCC-A-GCATGTGCCGATGGTGGTCGATACAACTA
* * * * *
3034242 CCCGCACTAAGGGCCAGCATGTACCAATGGTGGTCGATACGACTG
1 CCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGATACAACTA
* *
3034287 CCTGCACCAAGGGCCAGCATGTGTCGATGGTGGTC
1 CCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTC
3034322 AAGGTAACCG
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 63 0.94
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.17
Consensus pattern (45 bp):
CCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGATACAACTA
Found at i:3034409 original size:45 final size:45
Alignment explanation
Indices: 3034359--3034863 Score: 278
Period size: 45 Copynumber: 11.2 Consensus size: 45
3034349 CATGTGCCAA
* *
3034359 CACCAAAGCCCGGCATGTGCCGATGGTGTTCGAGGCAACCACCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCG
* * * * *
3034404 TACCAAGGCCCAGCATGTGTCGATGGTGTTCGATGCAACCGCACG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCG
* * * * * * * * * *
3034449 CACTAGGGGCCATCTTCTACCAATGGTGGTCGAGGCAA-GAGCCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCA-CCCG
* * * * * * *
3034494 CATCAAGGGCCGGCTTGTGTCGATGGTGGTCGAGGCAACCGCCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCG
* * ** *
3034539 TACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACTGCCCA
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCG
* * * * * * * * *
3034584 CACCAAGGGCCAGCTTATGCCGAGGGTGCTCGAGGTAATCGCCCT
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCG
* * * * * * ** *
3034629 CACCAAGGGCCATCTTTTGACGATGGTGGTT-GAGGTAACTGCCTG
1 CACCAAGGCCCAGCATGTGCCGATGGT-GTTCGAGGCAACCACCCG
* * * *
3034674 CACCAAGGCCCAGCACGTGCTGATGGTGTTCAAGGCAACCGCCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCG
* * * * * * * *
3034719 CATCAGGGGCCAGCATGTGCCAATGGTGTTTGATGCAACCGCCCA
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCG
* * * * * * ** * * *
3034764 TACCAGGGGCCATCTTCTATCGATGGTGGTGGAGGCAA-GAGCCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCA-CCCG
* * * * * *
3034809 CACCAAGGGCCAGCTTGTACCGATGGTGGTCGAGGCAACCGCCCA
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCG
3034854 CACCAAGGCC
1 CACCAAGGCC
3034864 TAATGTCACG
Statistics
Matches: 346, Mismatches: 108, Indels: 12
0.74 0.23 0.03
Matches are distributed among these distances:
44 3 0.01
45 341 0.99
46 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.17
Consensus pattern (45 bp):
CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCG
Found at i:3034594 original size:135 final size:135
Alignment explanation
Indices: 3034374--3034861 Score: 463
Period size: 135 Copynumber: 3.6 Consensus size: 135
3034364 AAGCCCGGCA
* * * * * * *
3034374 TGTGCCGATGGTGTTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGTTCGATG
1 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGG
* * * * * * * * ** * *
3034439 CAACCGCACGCACTAGGGGCCATCTTCTACCAATGGTGGTCGAGGCAAGAGCCCGCATCAAGGGC
66 CAACCGCCCACACCAAGGGCCAGCTTATGCCAATGGTGCTCGAGGCAACCGCCCACACCAAGGGC
*
3034504 CGGCT
131 CAGCT
*
3034509 TGTGTCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGG
1 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGG
* * * * * *
3034574 CAACTGCCCACACCAAGGGCCAGCTTATGCCGAGGGTGCTCGAGGTAATCGCCCTCACCAAGGGC
66 CAACCGCCCACACCAAGGGCCAGCTTATGCCAATGGTGCTCGAGGCAACCGCCCACACCAAGGGC
*
3034639 CATCT
131 CAGCT
* * * * * * * *
3034644 TTTGACGATGGTGGTTGAGGTAACTGCCTGCACCAAGGCCCAGCACGTGCTGATGGTGTTCAAGG
1 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGG
* * * * * * * * * *
3034709 CAACCGCCCGCATCAGGGGCCAGCATGTGCCAATGGTGTTTGATGCAACCGCCCATACCAGGGGC
66 CAACCGCCCACACCAAGGGCCAGCTTATGCCAATGGTGCTCGAGGCAACCGCCCACACCAAGGGC
*
3034774 CATCT
131 CAGCT
* * * ** * ** * *
3034779 TCTATCGATGGTGGTGGAGGCAAGAGCCCGCACCAAGGGCCAGCTTGTACCGATGGTGGTCGAGG
1 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGG
3034844 CAACCGCCCACACCAAGG
66 CAACCGCCCACACCAAGG
3034862 CCTAATGTCA
Statistics
Matches: 286, Mismatches: 67, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
135 286 1.00
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (135 bp):
TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGG
CAACCGCCCACACCAAGGGCCAGCTTATGCCAATGGTGCTCGAGGCAACCGCCCACACCAAGGGC
CAGCT
Found at i:3039863 original size:45 final size:45
Alignment explanation
Indices: 3039738--3040266 Score: 427
Period size: 45 Copynumber: 11.8 Consensus size: 45
3039728 GGGCATGACA
* * * *
3039738 CCAGCATGTGCCGATGGTGTTCGAGGCAACTGCCCGCACCAGGGG
1 CCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
* * * * * * ** *
3039783 CCATCTTCTACTGACGGTGGTCGAGACAAGAGCCCACACCAAGGG
1 CCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
* * * * *
3039828 CC-GACTTGTGCCAATGGTGCTTGAGGCAACTGCCCACACCAA-GG
1 CCAG-CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
*** * * *
3039872 CCTAGCACATGCCGATGGTGTTCGAGGCAACCACCCGCACCAAGGC
1 CC-AGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
* * * *
3039918 CCAGCATGTGTCGATGGTGGTCGAGGCAACCGCCAGCACCAAGGC
1 CCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
* * * * ** *
3039963 CCAGCATGTGCCGATGGTGTTCGACGTAACTACCTGCACCAAGGG
1 CCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
* * * *
3040008 CCATCTTGTGCTGATGGTGGTCGAGGCAACCGTCTGCACCAAGGG
1 CCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
* * *
3040053 TCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCTGTACCAAGGG
1 CCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
* * * * * **
3040098 CCATCTTCTACCAATTGTGGTCGAGGCAAGAGCCCGCACCAAGGG
1 CCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
* * * **
3040143 CCTA-CTTGTGCCGATGGTGCTCGAGGCAACTGCCTGCACCGGGGG
1 CC-AGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
* * * * * * *
3040188 CCATCTTCTGTCGGTGGTGGTCGAGGTAACTGCTCGCACCAA-GG
1 CCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
* * *
3040232 CCAGCATGTGTCAATGGTGGTCGAGGCAACCGCCC
1 CCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCC
3040267 CGATGGTGTT
Statistics
Matches: 380, Mismatches: 98, Indels: 13
0.77 0.20 0.03
Matches are distributed among these distances:
44 34 0.09
45 341 0.90
46 5 0.01
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.18
Consensus pattern (45 bp):
CCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
Found at i:3040272 original size:24 final size:24
Alignment explanation
Indices: 3040245--3040290 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
3040235 GCATGTGTCA
3040245 ATGGTGGTCGAGGCAACCGCCCCG
1 ATGGTGGTCGAGGCAACCGCCCCG
* * *
3040269 ATGGTGTTTGATGCAACCGCCC
1 ATGGTGGTCGAGGCAACCGCCC
3040291 GCACCAGGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (24 bp):
ATGGTGGTCGAGGCAACCGCCCCG
Found at i:3040331 original size:44 final size:45
Alignment explanation
Indices: 3040267--3040510 Score: 192
Period size: 44 Copynumber: 5.5 Consensus size: 45
3040257 GCAACCGCCC
* * *
3040267 CGATGGTGTTTGATGCAACCGCCCGCACCAGGGGCCATCTTGTGT
1 CGATGGTGGTTGAGGCAACCGCCTGCACCAGGGGCCATCTTGTGT
* * * * *
3040312 CGAT-GTGGTTGAGGCAACCGCCTACACAAGGGTCGA-CTAGTGT
1 CGATGGTGGTTGAGGCAACCGCCTGCACCAGGGGCCATCTTGTGT
* * * ** * *
3040355 TGATGGTGTTTGAGGCAACTGCCCACACCAAGGGGCCATCTTCTAT
1 CGATGGTGGTTGAGGCAACCGCCTGCACC-AGGGGCCATCTTGTGT
* ** * * * *
3040401 CGATGGTGGTCGAGGCAACTACCTGCACCA-GGCCCAACATGTGC
1 CGATGGTGGTTGAGGCAACCGCCTGCACCAGGGGCCATCTTGTGT
* ** *
3040445 CGATTGT-GTTCGACACAATCGCCTGCACCAGGGGCCATCTTGTG-
1 CGATGGTGGTT-GAGGCAACCGCCTGCACCAGGGGCCATCTTGTGT
*
3040489 CGATGGTGGTCGAGGCAACCGC
1 CGATGGTGGTTGAGGCAACCGC
3040511 TCGCCCAAAG
Statistics
Matches: 148, Mismatches: 45, Indels: 13
0.72 0.22 0.06
Matches are distributed among these distances:
43 11 0.07
44 87 0.59
45 23 0.16
46 27 0.18
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (45 bp):
CGATGGTGGTTGAGGCAACCGCCTGCACCAGGGGCCATCTTGTGT
Found at i:3040623 original size:45 final size:45
Alignment explanation
Indices: 3040560--3040726 Score: 158
Period size: 45 Copynumber: 3.7 Consensus size: 45
3040550 CAGCCCGTAA
* *
3040560 GGCCCAGCACGTGCCGATGGTGTTCAAGGCAACTGTTCGCACCGA-
1 GGCCCAGCATGTGCCGATGGTGTTCAAGGCAACTGTCCGCACC-AT
*** * *
3040605 GGCTTGGCATGTGCCGATGGTGGTCAAGGCAACCG-CCGCACCAT
1 GGCCCAGCATGTGCCGATGGTGTTCAAGGCAACTGTCCGCACCAT
** * *
3040649 GGCCCAGCATGTGCCGATGGTGTTTGATGCAACTGTCCGCACCAA
1 GGCCCAGCATGTGCCGATGGTGTTCAAGGCAACTGTCCGCACCAT
* * * * * *
3040694 GGGCCAACTTATACCGATGGTGGTCAAGGCAAC
1 GGCCCAGCATGTGCCGATGGTGTTCAAGGCAAC
3040727 CATTAGCACC
Statistics
Matches: 95, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
43 1 0.01
44 33 0.35
45 61 0.64
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
GGCCCAGCATGTGCCGATGGTGTTCAAGGCAACTGTCCGCACCAT
Found at i:3040736 original size:45 final size:45
Alignment explanation
Indices: 3040687--3040772 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
3040677 GCAACTGTCC
*
3040687 GCACCAAGGGCCAACTTATACCGATGGTGGTCAAGGCAACCATTA
1 GCACCAAGGGCCAACTTATACAGATGGTGGTCAAGGCAACCATTA
* * ** *
3040732 GCACCAAGGGTCAACTTGTGTAGATGGTGGTCGAGGCAACC
1 GCACCAAGGGCCAACTTATACAGATGGTGGTCAAGGCAACC
3040773 GCATGCACCA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.28, C:0.24, G:0.29, T:0.19
Consensus pattern (45 bp):
GCACCAAGGGCCAACTTATACAGATGGTGGTCAAGGCAACCATTA
Found at i:3040921 original size:13 final size:13
Alignment explanation
Indices: 3040903--3040927 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3040893 ATGGTCGATG
3040903 CATGTGCCATCAC
1 CATGTGCCATCAC
3040916 CATGTGCCATCA
1 CATGTGCCATCA
3040928 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:3043472 original size:26 final size:26
Alignment explanation
Indices: 3043442--3043498 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
3043432 GTTGACTTAG
*
3043442 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3043468 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3043494 GCATA
1 GCATA
3043499 AGGACCAGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3043846 original size:26 final size:26
Alignment explanation
Indices: 3043810--3043862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3043800 GTTGACTTAG
3043810 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3043836 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3043862 G
1 G
3043863 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3047143 original size:26 final size:26
Alignment explanation
Indices: 3047107--3047169 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
3047097 TTTCTAGCTC
*
3047107 GTCTAAGCATACGGAGTTCATTCCCA
1 GTCTAAGCATACAGAGTTCATTCCCA
*
3047133 GTCTAAGCATACAGAGTTCATTCCTA
1 GTCTAAGCATACAGAGTTCATTCCCA
3047159 GTCTAAGCATA
1 GTCTAAGCATA
3047170 TAAACTAGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (26 bp):
GTCTAAGCATACAGAGTTCATTCCCA
Found at i:3047519 original size:26 final size:26
Alignment explanation
Indices: 3047483--3047535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3047473 GTTGACTTAG
*
3047483 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
3047509 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3047535 G
1 G
3047536 ATCGAACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:3053028 original size:45 final size:45
Alignment explanation
Indices: 3052979--3053098 Score: 195
Period size: 45 Copynumber: 2.7 Consensus size: 45
3052969 GTGCTCGTAT
* *
3052979 CAAGGGCCAACGTGTGTCGATGGTGGTCGATGCGACTGCCCGCAC
1 CAAGGGCCAGCATGTGTCGATGGTGGTCGATGCGACTGCCCGCAC
3053024 CAAGGGCCAGCATGTGTCGATGGTGGTCGATGCGACTGCCCGCAC
1 CAAGGGCCAGCATGTGTCGATGGTGGTCGATGCGACTGCCCGCAC
* * *
3053069 TAAGGGCCAGCATGTGCCTATGGTGGTCGA
1 CAAGGGCCAGCATGTGTCGATGGTGGTCGA
3053099 GGCAACCACC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.19
Consensus pattern (45 bp):
CAAGGGCCAGCATGTGTCGATGGTGGTCGATGCGACTGCCCGCAC
Found at i:3053351 original size:45 final size:45
Alignment explanation
Indices: 3053254--3054712 Score: 775
Period size: 45 Copynumber: 32.4 Consensus size: 45
3053244 CCATCTTCAA
** * * *
3053254 TCGATGGTGGTCGAGGCAAGAGCCCACACCAAGGGCCGGCTTGCG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * *
3053299 -CTAATGGTGGTCGAGGCAACCGTCCGCACCAAGGGCCATCCTCTG
1 TC-GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * * **
3053344 CCGATGGTGGTTGAGGTAACCGCTCGCACCAAGGCCCAGCACGTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * ** * *
3053389 CCGATGGTGTTTGAGGCAACCGCTTGTACCAAGGGCCAGCTTGTA
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * * * * *
3053434 CCAATGGTGCTCGAGGTAACCGCCCGCACAAAGGGCCATCTTCTA
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * *
3053479 TCGATGGTGGTCGAGGTAACCGCCCACACTAAGGCCCAGCATGTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * * *
3053524 CCGATGGTGTTCAAGGTAACCACCCGCACCAAAGGCCAGCTTGTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * ** * *
3053569 -CTAATGGTGCTCGAGGTAACTGCCTACACCAAGGGCCATCTTCTG
1 TC-GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * ***
3053614 TCGATAGTGGTTGAGGCAATCGCCC-CTACCAAGGCCCAGCACATG
1 TCGATGGTGGTCGAGGCAACCGCCCGC-ACCAAGGGCCAGCTTGTG
* * *
3053659 TCGATGGTGTTCGAGGCAACCACCCGCACC-AGGCGCCAGCATGTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGG-GCCAGCTTGTG
* * * * * * * *
3053704 CCGATGGTGTTTGATGCAACCGCCTGCACCAAGGGCCATCTTCTA
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
** * * ** * *
3053749 TCGATGGTGGTTAAAGTAAGAGCCCGCACCAAGGGTC-GACTTGTA
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTG
* *
3053794 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * * * ***
3053839 CCAATGGTGGTTGAGGTAACCACCCACACCAA-GGCTCAGCACATG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-CAGCTTGTG
* * * * * *
3053884 CCGATAGTGTTCGAGGTAACCGCCTGCACC-AGGGTCCAGCATGTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG-CCAGCTTGTG
* * * * * *
3053929 TCGATGGTGTTCGATGCAACCGCCCACACCAGGGGCCATCTTCTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* ** * * *
3053974 TCGATGGTGGTCGAGGTAAGAGCCCACACCAAGGGTCAGCTTATG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * ** **
3054019 TCGATGGTGCTCGAGGCAATCGCTGGCACCAA-GGCCTAGCACGTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGCTTGTG
* * * * * *
3054064 TCGATGATGGTCGAGGCAATCGCCAGCACCAAGGCCCAGCATATG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * * * * *
3054109 TCGATGGTGTTCGACGCAACCACTCACACCAAGGGCCATCTTATA
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * * *
3054154 CCGATGGTGGTTGAGGCAACCGCTCACATCAAGGGTC-GACTTGTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTG
* * * * * * * *
3054199 CCGATGGTGGTCGAGGCAACCGTCCGTACTAGGGGCCATCTTCTA
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
** ** ** ** *
3054244 TCGATTATGGTCGAGATAAGAGCCTACACCAAGGGCC-GACTTGAG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTG
* * * * * * *
3054289 TCGATGGTGCTCGAGGCAATCGCCCGTACTAAGGGCCATCTTCTA
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * * ** *
3054334 CCGATGGTGGTCGAGGTAATCGCCCGTACCAAGGCCCAG-TAAATA
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT-TGTG
* * * * * * * * * *
3054379 TCGATGGTGTTTGACGTAACTGCCCACACTAAAGGCCATCTTATG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * * *
3054424 CCGATGGTGGTCGAGGTAACCACCCGTACCAAGGGTCAACTTGTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * * *
3054469 CCGATGGTGGTCCAGGCAACCGCCCGCACCAAGGGCCATCGTCTA
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* ** ** * *
3054514 TAGATTATGGTCG-GAGCAAGAGCCCACACCAAGGGCCAGCTTATG
1 TCGATGGTGGTCGAG-GCAACCGCCCGCACCAAGGGCCAGCTTGTG
* * * * * * * *
3054559 TCGATAGTGCTCGAAGCAGCCACCCCCACCAAGGGCCATCTTCTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* ** * * *
3054604 TTGATGGTGGTCGAGGCAACTACCTGCACCAAGGCCCAGCATGTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
* ** ** * *
3054649 TCGATGGTGTTCGAGGCAACTACTTGTACC-AGGGCCCAACTTGTG
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG-CCAGCTTGTG
*
3054694 CCGATGGTGGTCGAGGCAA
1 TCGATGGTGGTCGAGGCAA
3054713 GTGCCCATAC
Statistics
Matches: 1060, Mismatches: 329, Indels: 50
0.74 0.23 0.03
Matches are distributed among these distances:
44 18 0.02
45 1028 0.97
46 14 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (45 bp):
TCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTG
Found at i:3055693 original size:26 final size:26
Alignment explanation
Indices: 3055656--3055738 Score: 121
Period size: 26 Copynumber: 3.2 Consensus size: 26
3055646 GTTGAATTAG
* *
3055656 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
3055682 GCATACAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3055708 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3055734 GCATA
1 GCATA
3055739 TGGACCGGAT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3055909 original size:26 final size:26
Alignment explanation
Indices: 3055880--3055932 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3055870 GTTGACTTAG
*
3055880 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3055906 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3055932 G
1 G
3055933 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:3057694 original size:35 final size:35
Alignment explanation
Indices: 3057615--3057702 Score: 122
Period size: 35 Copynumber: 2.5 Consensus size: 35
3057605 TTAATCTCGG
* * *
3057615 TCATTTTCAATTTCTAACCCACGGTTTAATCCTAA
1 TCATTTTCATTTTCTGACCCACAGTTTAATCCTAA
*
3057650 TCATTTTCATTTTCTGACCCATAGTTTAATCCTAA
1 TCATTTTCATTTTCTGACCCACAGTTTAATCCTAA
* *
3057685 TCGTTTTCATTTTTTGAC
1 TCATTTTCATTTTCTGAC
3057703 TTGTGATTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.24, C:0.23, G:0.07, T:0.47
Consensus pattern (35 bp):
TCATTTTCATTTTCTGACCCACAGTTTAATCCTAA
Done.