Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 25 of 93
Found at i:3117322 original size:139 final size:139
Alignment explanation
Indices: 3117154--3117501 Score: 389
Period size: 139 Copynumber: 2.5 Consensus size: 139
3117144 TTAACACCGA
* * *
3117154 TCATTTTCATTTTCTAACTCATGATTTAATCTAAGTCGTTTTCATTTTCTAACTCACGGTTTAAT
1 TCATTTTTATTTTCTAACTCATGGTTTAATCT-AGTCGTTTTCATTTTCTAACTCACGATTTAAT
* **
3117219 CCTTGTCATTTTCATTTTCTAACCCATAGTTTAATCCCGATCATTTTCATTTTCTGACTCATGAT
65 CCTGGTCATTTTCATTTTCTAACCCATAGTTTAATCCCGATCATTTTCATTTTCTGACTCACAAT
*
3117284 TTAA-TCTGGG
130 TTAATTCT-AG
* * * * * * *
3117294 T-TTTTTTATTTTCTAAGTCATGGTTTAATCCTGGTCGTTTTTATTTTTTGACTCATGATTTAAT
1 TCATTTTTATTTTCTAACTCATGGTTTAAT-CTAGTCGTTTTCATTTTCTAACTCACGATTTAAT
* * * * * *
3117358 CCTGGTCATTTTCATTTTCTGACTCGTGGTTTAATTCCTATCATTTTCATTTTCTGACTCACAAT
65 CCTGGTCATTTTCATTTTCTAACCCATAGTTTAATCCCGATCATTTTCATTTTCTGACTCACAAT
3117423 TTAATTCTAG
130 TTAATTCTAG
* * * *
3117433 TCATTTTTATTTCTCTAACTCGTGGTTTAATCCCTA-TTGTCTTCATTTTCTGACTCATCG-TTT
1 TCATTTTTATTT-TCTAACTCATGGTTTAAT--CTAGTCGTTTTCATTTTCTAACTCA-CGATTT
3117496 AATCCT
62 AATCCT
3117502 AATAGTTTTT
Statistics
Matches: 173, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
139 112 0.65
140 15 0.09
141 42 0.24
142 4 0.02
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50
Consensus pattern (139 bp):
TCATTTTTATTTTCTAACTCATGGTTTAATCTAGTCGTTTTCATTTTCTAACTCACGATTTAATC
CTGGTCATTTTCATTTTCTAACCCATAGTTTAATCCCGATCATTTTCATTTTCTGACTCACAATT
TAATTCTAG
Found at i:3118498 original size:104 final size:104
Alignment explanation
Indices: 3118359--3118557 Score: 240
Period size: 104 Copynumber: 1.9 Consensus size: 104
3118349 ATACTGATCA
* * *
3118359 TTTCATTTTCTAACCCATGATTTAATCTCGATCATTTTCATTTTCTAACCCATGGTTTAAT-TCT
1 TTTCATTTTCTAACCCATGATTTAATCTAGATCATTTTCAATTTCTAACCCATGGTTAAATCT-T
*
3118423 GATT-GTTTTCATTTTTTGACCCATGGTTTAACCTGGTTGT
65 GATTGGTTTT-ATTTTTTGACCCATGATTTAACCTGGTTGT
* * * * * * **
3118463 TTTCATTTTCTGACGCATGATTTAATTTAGGTCATTTTTAATTTCTGATTCATGGTTAAATCTTG
1 TTTCATTTTCTAACCCATGATTTAATCTAGATCATTTTCAATTTCTAACCCATGGTTAAATCTTG
* *
3118528 GTTGGTTTTATTTTTTGACTCATGATTTAA
66 ATTGGTTTTATTTTTTGACCCATGATTTAA
3118558 TCTCAATCAT
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
104 73 0.92
105 6 0.08
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (104 bp):
TTTCATTTTCTAACCCATGATTTAATCTAGATCATTTTCAATTTCTAACCCATGGTTAAATCTTG
ATTGGTTTTATTTTTTGACCCATGATTTAACCTGGTTGT
Found at i:3118571 original size:104 final size:103
Alignment explanation
Indices: 3118342--3118572 Score: 232
Period size: 104 Copynumber: 2.2 Consensus size: 103
3118332 CTCTGGCTTG
* *
3118342 TGATTTAATACTGATCATTTCATTTTCTAACCCATGATTTAATCTCGATCATTTTCATTTTCTAA
1 TGATTTAAT-CTGATCATTTCATTTTCTAACCCATGATTTAATCTAGATCATTTTCAATTTCTAA
*
3118407 CCCATGGTTTAATTCTGATTGTTTTCATTTTTTGACCCA
65 CCCATGGTTAAATTCTGATTGTTTTCATTTTTTGACCCA
* * * ** * * * * * *
3118446 TGGTTTAACCTGGTTGTTTTCATTTTCTGACGCATGATTTAATTTAGGTCATTTTTAATTTCTGA
1 TGATTTAATCT-GATCATTTCATTTTCTAACCCATGATTTAATCTAGATCATTTTCAATTTCTAA
** * *
3118511 TTCATGGTTAAA-TCTTGGTTGGTTTT-ATTTTTTGACTCA
65 CCCATGGTTAAATTC-TGATT-GTTTTCATTTTTTGACCCA
*
3118550 TGATTTAATCTCAATCATTTCAT
1 TGATTTAATCT-GATCATTTCAT
3118573 CTTTAGACTC
Statistics
Matches: 99, Mismatches: 25, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
103 4 0.04
104 90 0.91
105 5 0.05
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.50
Consensus pattern (103 bp):
TGATTTAATCTGATCATTTCATTTTCTAACCCATGATTTAATCTAGATCATTTTCAATTTCTAAC
CCATGGTTAAATTCTGATTGTTTTCATTTTTTGACCCA
Found at i:3119830 original size:176 final size:175
Alignment explanation
Indices: 3119648--3119973 Score: 395
Period size: 176 Copynumber: 1.9 Consensus size: 175
3119638 TTTCTAACTT
* * * * *
3119648 GTGGTTTAATCCTGGTCCCTTTT-ATTTTTTGACTCAT-GATTTAGTCCCGATCATTTTCATTTT
1 GTGGTTTAATCCTGG-CCATTTTCATTTTCTAACTCATGGA-TTAATCCCGATCATTTTAATTTT
* * * * * * * **
3119711 CTGACTCGTGGTTTAATTCCCATTGTTTTCATTTTCTGACTTGTGATTTAATTTTGGTCATTTTT
64 CTAACTCATGGTTTAATGCCAATCGTTTTCAGTTTCAGACTCATGATTTAATTTTGGTCATTTTT
* *
3119776 ATGTCTCTGACTCATGGTTTAATCCCCGTTGTCTTCATTTTTTAATTG
129 AT-TCTCTAACTCATGATTTAATCCCCGTTGTCTTCATTTTTTAATTG
* * * *
3119824 GTGGTTTCATCTTGGCCATTTTCATTTTCTAACTCATGGATTAATCCCTATCGTTTTAATTTTCT
1 GTGGTTTAATCCTGGCCATTTTCATTTTCTAACTCATGGATTAATCCCGATCATTTTAATTTTCT
* * *
3119889 AACTCATGGTTTAATGGCAATCGTTTTTAGTTTCAGACTCATGATTTAATTTTTGTCATTTTTAT
66 AACTCATGGTTTAATGCCAATCGTTTTCAGTTTCAGACTCATGATTTAATTTTGGTCATTTTTAT
*
3119954 TTTCTAACTCATGATTTAAT
131 TCTCTAACTCATGATTTAAT
3119974 TATGATCATT
Statistics
Matches: 124, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
175 23 0.19
176 99 0.80
177 2 0.02
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (175 bp):
GTGGTTTAATCCTGGCCATTTTCATTTTCTAACTCATGGATTAATCCCGATCATTTTAATTTTCT
AACTCATGGTTTAATGCCAATCGTTTTCAGTTTCAGACTCATGATTTAATTTTGGTCATTTTTAT
TCTCTAACTCATGATTTAATCCCCGTTGTCTTCATTTTTTAATTG
Found at i:3121461 original size:139 final size:137
Alignment explanation
Indices: 3121270--3121713 Score: 323
Period size: 139 Copynumber: 3.2 Consensus size: 137
3121260 CTCGATCATT
* * *
3121270 TTCATTTTCTGACTCATGATTTGATTCCAGTTGTTTTTATTTCTTTGACTCATGATTTAATGCCA
1 TTCATTTTCTGACTCATGATTTAATTCCAGTTGTTTTCATTTCTTTGACTCATGATTTAATCCCA
* * * * *
3121335 GTCATTTTCATTTTTTGGCTCGTCGTTTAATTCCTATCATTTTCATTTTTTGACCTGTGGTTTAT
66 GTCATTTTCATTGTTTGACTCCT-GATTAATT-CGATCATTTTCATTTTTTGACCTGTGGTTTAT
3121400 TCTCAATCA
129 TCTCAATCA
* * * *
3121409 TTCACTTTT-TGACTTATGGTTTAATTCCCA-TTGTTTTACATTT-TTTGGCTCATGCTTTAATC
1 TTCA-TTTTCTGACTCATGATTTAATT-CCAGTTGTTTT-CATTTCTTTGACTCATGATTTAATC
* * *
3121471 CCTGTCATTTTCATTGTTTGACTCCTGATTAATTCGATCATTTTCATTTTCTGA--TGCATGGTA
63 CCAGTCATTTTCATTGTTTGACTCCTGATTAATTCGATCATTTTCATTTTTTGACCTG--TGGTT
* *
3121534 TAATCCCAATCA
126 TATTCTCAATCA
* * * ** * * * *
3121546 TTTTCATTTTTTGACTCGA-GATTTAATTCGAATCATTTTTATTT-TCTGACTCGTGGTTTAATC
1 --TTCATTTTCTGACTC-ATGATTTAATTCCAGTTGTTTTCATTTCTTTGACTCATGATTTAATC
* * * * * * * **
3121609 CTAGTCGTTTTTATTTTTTGACTCGTGATTTAATCTGGGTCGCTTTCATTTTTTGA-CTCGTGGT
63 CCAGTCATTTTCATTGTTTGACTCCTGA-TTAAT-TCGATCATTTTCATTTTTTGACCT-GTGGT
* *
3121673 TCAATTC-CCATCA
125 T-TATTCTCAATCA
*
3121686 TTTTTCATTTT-TGACTCGTGATTTAATT
1 ---TTCATTTTCTGACTCATGATTTAATT
3121714 ATGGTCATTT
Statistics
Matches: 245, Mismatches: 43, Indels: 33
0.76 0.13 0.10
Matches are distributed among these distances:
135 2 0.01
137 32 0.13
138 54 0.22
139 90 0.37
140 52 0.21
141 14 0.06
142 1 0.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.51
Consensus pattern (137 bp):
TTCATTTTCTGACTCATGATTTAATTCCAGTTGTTTTCATTTCTTTGACTCATGATTTAATCCCA
GTCATTTTCATTGTTTGACTCCTGATTAATTCGATCATTTTCATTTTTTGACCTGTGGTTTATTC
TCAATCA
Found at i:3123046 original size:212 final size:205
Alignment explanation
Indices: 3122587--3123125 Score: 528
Period size: 212 Copynumber: 2.6 Consensus size: 205
3122577 GTTTTGATTA
** ** *
3122587 ATTTT-ATTTATCTAACTTGTGATTTAATAACAATCGTTTTCATTTTTTGACTTGTGATTTAATC
1 ATTTTCATTT-TCTAACTCATGATTTAATCCCGATCGTTTTCATTTTTTGACTTGTG-TTTAATC
* * * * * *** *
3122651 TCATTCGTTTTCATTTTCTAACCCATGGTTTAATCCCGATCATTTTCATTTTCTGACTCATGTTT
64 CCA-TCGTTTTCATTTT-TGACTCGTGATTTAATTTTGATCATTTTTATTTTCTGACTCATGTTT
**** * * *
3122716 AATCTTGGTCGTTTCATTTTCTCACCCATGGTTTAATCCTGGTCATTTTCATTTTCTAACTCATT
127 AATCCCCATCGTTTCATTTTCTAACCCATGGTTTAATCCTGATCATTTTCATTTTCTAACTCATG
*
3122781 GTTTAATCCTAGTT
192 GTTTAATCCTAGTC
* * *
3122795 GTTTTTATTTTCTAACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTTGTAGTTTAATGC
1 ATTTTCATTTTCTAACTCATGATTTAATCCCGATCGTTTTCATTTTTTGACTTGT-GTTTAAT-C
* *
3122860 CCATCATTTTCATTTCTTGACTCGTGATTTAATTTTGGTCATTTTTATTTCTCTGACTCATGGTT
64 CCATCGTTTTCATTT-TTGACTCGTGATTTAATTTTGATCATTTTTATTT-TCTGACTCAT-GTT
* * * * * * *
3122925 TAATCCCCATTGTATTCATTTTCTAACTCGTGGTTTAATCCTGATTATTTTTCATTTTTTGACTG
126 TAATCCCCATCGT-TTCATTTTCTAACCCATGGTTTAATCCTGATCA-TTTTCATTTTCTAACTC
* *
3122990 GTGGTTTCAT-CTCAGTC
189 ATGGTTTAATCCT-AGTC
* * * * *
3123007 ATTTTCATTTTCTAACTCATGGTTTAATCCCTATCGTTTTAATTTTCTGACTCGTGGTTTAATCC
1 ATTTTCATTTTCTAACTCATGATTTAATCCCGATCGTTTTCATTTTTTGACTTGT-GTTTAATCC
3123072 CAATCGTTTT--TTGGTTTAGACTCGTGATTTAATTTTGATCATTTTTATTTTCTG
65 C-ATCGTTTTCATT--TTT-GACTCGTGATTTAATTTTGATCATTTTTATTTTCTG
3123126 CTTCGTGATT
Statistics
Matches: 274, Mismatches: 44, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
208 86 0.31
209 19 0.07
210 13 0.05
211 39 0.14
212 117 0.43
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.51
Consensus pattern (205 bp):
ATTTTCATTTTCTAACTCATGATTTAATCCCGATCGTTTTCATTTTTTGACTTGTGTTTAATCCC
ATCGTTTTCATTTTTGACTCGTGATTTAATTTTGATCATTTTTATTTTCTGACTCATGTTTAATC
CCCATCGTTTCATTTTCTAACCCATGGTTTAATCCTGATCATTTTCATTTTCTAACTCATGGTTT
AATCCTAGTC
Found at i:3126853 original size:104 final size:104
Alignment explanation
Indices: 3126673--3126896 Score: 274
Period size: 104 Copynumber: 2.2 Consensus size: 104
3126663 TTTAATTTCA
* * * * *
3126673 ATTGTTTTCATTTTTTGACTCGTGATTTAATCTCGGTCGTTTTCATTTTCTAGCCTATGATTTAA
1 ATTGTTTTCATTTTTTGACTCGTGATTTAATATAGATCCTTTTCATTTTCTAGCCTATGACTTAA
*
3126738 TTTCAGTCGTTTTCATTTTCTAACCCATGATTT-ATCCCG
66 TCTCAGTCGTTTT-ATTTTCTAACCCATGATTTAATCCCG
* * *
3126777 ATTGTTTTCATTTTTTGACTCGTGATTTAATATAGATCCTTTTTATTTTCT-GCTTCATGGCTTA
1 ATTGTTTTCATTTTTTGACTCGTGATTTAATATAGATCCTTTTCATTTTCTAGCCT-ATGACTTA
* * **
3126841 ATC-CTAGTCGTTTTATTTTTTGACTTATGATTTAATCCCG
65 ATCTC-AGTCGTTTTATTTTCTAACCCATGATTTAATCCCG
*
3126881 GTTGTTTTCATTTTTT
1 ATTGTTTTCATTTTTT
3126897 TACTTATGGT
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
103 19 0.18
104 84 0.82
ACGTcount: A:0.18, C:0.17, G:0.12, T:0.53
Consensus pattern (104 bp):
ATTGTTTTCATTTTTTGACTCGTGATTTAATATAGATCCTTTTCATTTTCTAGCCTATGACTTAA
TCTCAGTCGTTTTATTTTCTAACCCATGATTTAATCCCG
Found at i:3127109 original size:104 final size:104
Alignment explanation
Indices: 3126916--3129964 Score: 348
Period size: 106 Copynumber: 29.0 Consensus size: 104
3126906 TTTAATTCTT
* * * * *
3126916 ATCATTTTTATTTTCTAACTCGTGATTCAATTCTGGTCATTTGTATTTCTTTAACTTACGGTTTA
1 ATCATTTTTATTTTCTAACTCGTGATTTAA-TCTCGTCATTTTTATTT-TTTAACTCATGGTTTA
* **** *
3126981 ATCCGTATTGCCTTCATTTTCTGACTCGTGGTTTAATCCCA
64 ATCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * *
3127022 ATCATTTTTCATTTTCTAACTGGTGGTTTTATCT-GTCATTTTTATTTTTTTACTCATGGTTTAA
1 ATCATTTTT-ATTTTCTAACTCGTGATTTAATCTCGTCATTTTTATTTTTTAACTCATGGTTTAA
3127086 TCCCTATCATTTTAATTTTCTGACTCGTGGTTTAAT-CCA
65 TCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * *
3127125 TGTCATTTTTAGTTT-TAGACTCATGATTTAATTTCGTCATTTTTATTTTCTAACTCATGATTGA
1 -ATCATTTTTATTTTCTA-ACTCGTGATTTAATCTCGTCATTTTTATTTTTTAACTCATGGTTTA
** ** * * *
3127189 ATTTC-AGTCATTTTTGTTTTTTGACTAGTGGTTTAATCCCG
64 ATCCCTA-TCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * * *
3127230 ATCATTTTCATTTTTTGACTCGTGATTTGATTTTAGTCATTTTTATTTCTTTGAGTCATGATTTA
1 ATCATTTTTATTTTCTAACTCGTGATTT-AATCTCGTCATTTTTATTT-TTTAACTCATGGTTTA
** ** * * * ** ****
3127295 ATGTCGGTTATTTTAATTTTTTGACTTGTCATTTAATTTTG
64 ATCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * ** *
3127336 AT--TGTTTTATTTTCTTACCCGTGGTTTAATCTCAGACATTTTCACTTTTTGACTTGTTGTTTA
1 ATCAT-TTTTATTTTCTAACTCGTGATTTAATCTC-GTCATTTTTATTTTTTAACTCATGGTTTA
** * * * **
3127399 ATTCCC-ATTGTTTTACATTTTTTGACTCATGCTTTAATCCTT
64 A-TCCCTATCATTTTA-ATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * *
3127441 GTCATTTTTATTTTTTGATTTGTGATTTAAT-T--T--TTGTCA-TTTTT-A-T--T-GTTTAAT
1 ATCATTTTTATTTTCTAACTCGTGATTTAATCTCGTCATTTTTATTTTTTAACTCATGGTTTAAT
* * * * ** *
3127495 -CCTAATCATTTTTAGTTTT-AGACTTGTGATTTAATTTCT
66 CCCT-ATCA-TTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * *
3127534 ATCATTTTTATTTTCTGACTTGTGATTTATTCTAGTCATTTTCATTTTTTGACT-AGTGGTTTAA
1 ATCATTTTTATTTTCTAACTCGTGATTTAATCTCGTCATTTTTATTTTTTAACTCA-TGGTTTAA
* * * * * *
3127598 T-CTTGGTCATTTTTATTTTTTGACTCATGGTTTAATCTCA
65 TCCCT-ATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * *
3127638 GTCATTTTCACTTTT-TGACTTGTGGTTTAATC-CTTCTTGTTTTACATTTTT-A-TC-----TT
1 ATCATTTTTA-TTTTCTAACTCGTGATTTAATCTCGTCAT-TTTTA-TTTTTTAACTCATGGTTT
* * * * *
3127694 AGT--C-AT--TTTCAGTTTT-TGACTTGTGGTTTAATCCCT
63 AATCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* ** * * * * * * * * *
3127730 GTTGTTTTACATTTTCTGACTCATGCTTTAATCCCTGTCATTTTCATTTTTTGAC-GA-GTTTTT
1 ATCATTTT-TATTTTCTAACTCGTGATTTAATCTC-GTCATTTTTATTTTTTAACTCATG-GTTT
* * * * * *
3127793 AATCTCTATCATTTTTATTTTTTGACTCATGATTTAATCTCA
63 AATCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * * * *
3127835 GTCATTTTTTTTTTTTGACTCGTGGTATAATCTTGGTCGTTTTTCATTTTTTGACTCATCGTTTA
1 ATCATTTTTATTTTCTAACTCGTGATTTAATC-TCGTCATTTTT-ATTTTTTAACTCATGGTTTA
* ** * * * **
3127900 ATCCCGATCGCTTTCATTTTTTGACTTGTGGTTTAATCCTG
64 ATCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* ** * * * ** * ** * * * * * ** **
3127941 GTGGTTTTCATTTCCTCACTCAAGGTTTAGCCCTAGTCATTTTCAATTTCTGACTGGTAATTTAA
1 ATCATTTTTATTTTCTAACTCGTGATTTA-ATCTCGTCATTTTTATTTTTTAACTCATGGTTTAA
* * ****
3128006 TTCCAGTAATTTTCATTATCATTTTCATTTCCTGACTCGTGGTTTAATTATG
65 -TCC---------C--TATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * ** *
3128058 ATCATTTTCATTTTCTGACTCTTGATTTAATTTCAATCATTTTTATTTCTCTGACTTGTGATTTA
1 ATCATTTTTATTTTCTAACTCGTGATTTAATCTC-GTCATTTTTATTT-TTTAACTCATGGTTTA
* * * * * *
3128123 ATACCGATCATTTTCATTTTCTGACTCATGATTTAAT-CTA
64 ATCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * * * *
3128163 GGTCATTTTCATTTTCTAACCCATGGTTTAATCTTGGTCATTTTCATTTTATGACCCATGGTTTA
1 -ATCATTTTTATTTTCTAACTCGTGATTTAATC-TCGTCATTTTTATTTTTTAACTCATGGTTTA
** ** * * ** * *
3128228 ATTTCGGTCATTTTCATTTTCTGATTCGTATTTTAATTCTA
64 ATCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* ** * * * * **
3128269 GTTGTTTTTATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTTCTAACTTGTGGTTTA
1 ATCATTTTTATTTTCTAACTCGTGATTTAATCTCG-TCATTTTTATTTTT-TAACTCATGGTTTA
* * * * * * * * * **
3128334 ATTGCC-ATCGTTTTCATTTTTTCACTCTTGATTGAATTCTG
64 A-TCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * ** * ** *
3128375 GTCATTTTTATTTCTTTGACTCGTGGTTTAATCCCCGTTGTCTCCATTTTCTAACT-AGTGGTTT
1 ATCATTTTTATTT-TCTAACTCGTGATTTAAT-CTCGTCATTTTTATTTTTTAACTCA-TGGTTT
* * * * *
3128439 AAT-CCTGATCATTTTTCATTTTCTGACTAGTGGTTTCATCTCG
63 AATCCCT-ATCA-TTTTAATTTTCTGACTCGTGGTTTAATCCCA
* ** * * * * * * * ** *
3128482 GTTGTTTTCATTTTCTAACTCATGCTTTAATCTTTGTCGTTTTAATTTTTTGACTTGTAGTTTAA
1 ATCATTTTTATTTTCTAACTCGTGATTTAATC-TCGTCATTTTTATTTTTTAACTCATGGTTTAA
* * * * * * **
3128547 T-CCTGGTCATTTTCAGTATT-AGACTCATGATTTAATTTCA
65 TCCCT-ATCATTTT-AATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * * ***
3128587 GTCATTTTTATTTTGTGACTCATGATTTAAT-TTGATCGTTTTTGTGTTCCGACT-AGTGGTTTA
1 ATCATTTTTATTTTCTAACTCGTGATTTAATCTCG-TCATTTTTATTTTTTAACTCA-TGGTTTA
* * * * * * * *
3128650 ATCTCAATCATTTTCATTTTCTGAC-GGTGATTTGATTCCG
64 ATCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * **
3128690 ATCATTTTTATTTCTTTGACTCGTGATTTAATGCTAGTCATTTTCATTTTTTGACTCGTCATTTA
1 ATCATTTTTATTT-TCTAACTCGTGATTTAAT-CTCGTCATTTTTATTTTTTAACTCATGGTTTA
* * * * * ***
3128755 A--CTTCAGTCATTTTCATTTTTTGACTCATTGTTTAATCTTG
64 ATCCCT-A-TCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * **
3128796 GTCATTTTCACTTTT-TTACTTGTGATTTAATCTC--CATTGTTTTACATTTTTTGATTTATACT
1 ATCATTTTTA-TTTTCTAACTCGTGATTTAATCTCGTCA-T-TTTT--ATTTTTTAACTCATGGT
* * * **
3128858 TTAATCTCTATCATTTTCATTTTTTGA-T-GTGCTGTTTAATCCTT
61 TTAATCCCTATCATTTTAATTTTCTGACTCGTG--GTTTAATCCCA
* * * * * * * *
3128902 GTCATTTTTATTTTTTGACTCGTGATTTAATCTCCATCATTTTCATTTTTTGACTCGTGGTATAA
1 ATCATTTTTATTTTCTAACTCGTGATTTAATCT-CGTCATTTTTATTTTTTAACTCATGGTTTAA
* ** * * * ** *
3128967 TCCCAATTGTTTCTCATTTTCTAACTCATCATTTAATCCCG
65 TCCCTATCATTT-TAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * * *** * * * * *
3129008 ATCACTTTCATTTTTTGACTTGTGGTTTAATGTTAGAGGTTTTCATTTTCTCACTCAGGGTTTAG
1 ATCATTTTTATTTTCTAACTCGTGATTTAAT-CTCGTCATTTTTATTTTTTAACTCATGGTTTAA
* * * * ** *
3129073 T-CCTAGTCATTTTCATTTTCTAACTTGTGCTTTAATTTCG
65 TCCCTA-TCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * ** **
3129113 GTCATTTTCATTTTTTAACTC-TCATTTTAATC-CTGATCATTTTTATTTTCTAACTTGTAATTT
1 ATCATTTTTATTTTCTAACTCGTGA-TTTAATCTC-G-TCATTTTTATTTTTTAACTCATGGTTT
* * * *
3129176 AATTCCAAAAAATGTCATTATCATTTTCATTTGCTGACTCGTGTTTTAATCTCA
63 AA-TCC---------C--TATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
** * * * * * * *
3129230 ATTGTTTTCATTTTTTGACTCGTGATTTAATTTCGATCATTTTTATTTCTTTGACTTATGATTTA
1 ATCATTTTTATTTTCTAACTCGTGATTTAATCTCG-TCATTTTTATTT-TTTAACTCATGGTTTA
**** * * ** **
3129295 ATATAGATCATTTTCATTTTCTGACTCATGACTTAATTTCA
64 ATCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * *
3129336 ATCATTTTCATTTTCTAACCCATGGTTTAATCTCGGTCATTTTCATTTTCTAACTCGTGATTTAA
1 ATCATTTTTATTTTCTAACTCGTGATTTAATCTC-GTCATTTTTATTTTTTAACTCATGGTTTAA
*** * ** ** *
3129401 TCAAGATCATTTTTATTTTCTGACTTATCATTTAATCCTA
65 TCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* ** * * * * *
3129441 GTTGTTTTTATTTT-TGGACTCATGATTTAATC-CAGTTATTTTCATTTTTTGACTCATGGTTTA
1 ATCATTTTTATTTTCT-AACTCGTGATTTAATCTC-GTCATTTTTATTTTTTAACTCATGGTTTA
* ** * * *
3129504 ATTCCC-ATCATTTTCATTTTCTGACTTATGATTTAATTCTA
64 A-TCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * * *
3129545 GTCATTTTTATTTCTTTGAGTCATGGTGTAATC-C-CCATTGTCTTCATTTTTTGACTCATGGTT
1 ATCATTTTTATTT-TCTAACTCGTGATTTAATCTCGTCATT-T-TT-ATTTTTTAACTCATGGTT
** * * * * * *
3129608 TAATCCAAATCATTTTTCATTTTCTTACTAGTGGTTTCATCTCG
62 TAATCCCTATCA-TTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * * * * * * * *
3129652 TTCATATTCATTTTTTTGACTTGTGGTTTAATCGCTGTCA-TTTTAATTTTTGACTCGTGCTTTA
1 ATCATTTTTA-TTTTCTAACTCGTGATTTAATCTC-GTCATTTTTATTTTTTAACTCATGGTTTA
* * * * * ** ** *
3129716 ATCCCAATCGTTTTTAGTTTT-AGACTCATAATTTAATTTCG
64 ATCCCTATC-ATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * ** * *
3129757 ATCATTTTTATTTTTTGACTCATGATTTAATTTCAGTTGTTTTCATTTTTTGACT-AGTGGTTTA
1 ATCATTTTTATTTTCTAACTCGTGATTTAATCTC-GTCATTTTTATTTTTTAACTCA-TGGTTTA
* * ** * * ****
3129821 ATCCCTATCATTTTCATTTTCTAACTTATGATTTGATTTTG
64 ATCCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
* * * * * *
3129862 ATCGTTTTTATTTCTTTGACTCATGATTTAATGC-CGATCATTTTCATTTTTTAACTCGTGGTTT
1 ATCATTTTTATTT-TCTAACTCGTGATTTAAT-CTCG-TCATTTTTATTTTTTAACTCATGGTTT
* ** * *
3129926 AATCTCGGTCATTTTCACTTTT-TGACTTGTGGTTTAATC
63 AATCCCTATCATTTT-AATTTTCTGACTCGTGGTTTAATC
3129965 ATTGTTTTAC
Statistics
Matches: 2177, Mismatches: 609, Indels: 314
0.70 0.20 0.10
Matches are distributed among these distances:
92 28 0.01
93 69 0.03
94 19 0.01
95 10 0.00
96 1 0.00
97 1 0.00
98 10 0.00
99 14 0.01
100 6 0.00
101 2 0.00
102 6 0.00
103 64 0.03
104 396 0.18
105 567 0.26
106 662 0.30
107 141 0.06
108 13 0.01
109 3 0.00
110 2 0.00
115 1 0.00
116 2 0.00
117 127 0.06
118 33 0.02
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (104 bp):
ATCATTTTTATTTTCTAACTCGTGATTTAATCTCGTCATTTTTATTTTTTAACTCATGGTTTAAT
CCCTATCATTTTAATTTTCTGACTCGTGGTTTAATCCCA
Found at i:3127504 original size:58 final size:58
Alignment explanation
Indices: 3127431--3127545 Score: 167
Period size: 58 Copynumber: 2.0 Consensus size: 58
3127421 TGACTCATGC
** * * * * *
3127431 TTTAATCCTTGTCATTTTTATTTTTTGATTTGTGATTTAATTTTTGTCATTTTTATTG
1 TTTAATCCTAATCATTTTTAGTTTTAGACTTGTGATTTAATTTCTATCATTTTTATTG
3127489 TTTAATCCTAATCATTTTTAGTTTTAGACTTGTGATTTAATTTCTATCATTTTTATT
1 TTTAATCCTAATCATTTTTAGTTTTAGACTTGTGATTTAATTTCTATCATTTTTATT
3127546 TTCTGACTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.62
Consensus pattern (58 bp):
TTTAATCCTAATCATTTTTAGTTTTAGACTTGTGATTTAATTTCTATCATTTTTATTG
Found at i:3127597 original size:69 final size:70
Alignment explanation
Indices: 3127500--3127937 Score: 220
Period size: 69 Copynumber: 6.4 Consensus size: 70
3127490 TTAATCCTAA
* * * * * ** *
3127500 TCATTTTTAGTTTTAGACTTGTGATTTAAT-TTCTATCATTTTTATTTTCTGACTTGTGATTTAT
1 TCATTTTCACTTTTTGACTTGTGGTTTAATCTT-GATCATTTTTATTTTCTGACTCATGATTTAA
3127564 TCT-AG
65 TCTCAG
* * * * *
3127569 TCATTTTCATTTTTTGACTAGTGGTTTAATCTTGGTCATTTTTATTTTTTGACTCATGGTTTAAT
1 TCATTTTCACTTTTTGACTTGTGGTTTAATCTTGATCATTTTTATTTTCTGACTCATGATTTAAT
3127634 CTCAG
66 CTCAG
* * * * *
3127639 TCATTTTCACTTTTTGACTTGTGGTTTAATCCT--TCTTGTTTTACATTTT-T-A-TC-TTAGTC
1 TCATTTTCACTTTTTGACTTGTGGTTTAATCTTGATCAT-TTTT--ATTTTCTGACTCATGATTT
* *
3127698 ATTTTCAG
63 AATCTCAG
* * ** * *
3127706 T--TTTTGAC---TTG-----TGGTTTAATCCCTG-TTGTTTTACATTTTCTGACTCATGCTTTA
1 TCATTTTCACTTTTTGACTTGTGGTTTAAT-CTTGATCATTTT-TATTTTCTGACTCATGATTTA
* *
3127760 ATCCCTG
64 ATCTCAG
* ** * *
3127767 TCATTTTCATTTTTTGACGAGT-TTTTAATCTCT-ATCATTTTTATTTTTTGACTCATGATTTAA
1 TCATTTTCACTTTTTGACTTGTGGTTTAATCT-TGATCATTTTTATTTTCTGACTCATGATTTAA
3127830 TCTCAG
65 TCTCAG
*** * * * * *
3127836 TCATTTTTTTTTTTTGACTCGTGGTATAATCTTGGTCGTTTTTCATTTTTTGACTCATCG-TTTA
1 TCATTTTCACTTTTTGACTTGTGGTTTAATCTTGATCATTTTT-ATTTTCTGACTCAT-GATTTA
*
3127900 ATC-CCG
64 ATCTCAG
** *
3127906 ATCGCTTTCATTTTTTGACTTGTGGTTTAATC
1 -TCATTTTCACTTTTTGACTTGTGGTTTAATC
3127938 CTGGTGGTTT
Statistics
Matches: 280, Mismatches: 60, Indels: 56
0.71 0.15 0.14
Matches are distributed among these distances:
57 14 0.05
58 7 0.03
59 3 0.01
60 2 0.01
61 7 0.03
62 3 0.01
63 5 0.02
65 6 0.02
66 3 0.01
67 9 0.03
68 5 0.02
69 100 0.36
70 63 0.22
71 52 0.19
72 1 0.00
ACGTcount: A:0.18, C:0.15, G:0.13, T:0.55
Consensus pattern (70 bp):
TCATTTTCACTTTTTGACTTGTGGTTTAATCTTGATCATTTTTATTTTCTGACTCATGATTTAAT
CTCAG
Found at i:3127725 original size:57 final size:57
Alignment explanation
Indices: 3127632--3127744 Score: 190
Period size: 57 Copynumber: 2.0 Consensus size: 57
3127622 TCATGGTTTA
*
3127632 ATCTCAGTCATTTTCACTTTTTGACTTGTGGTTTAATCCTTCTTGTTTTACATTTTT
1 ATCTCAGTCATTTTCACTTTTTGACTTGTGGTTTAATCCCTCTTGTTTTACATTTTT
* * *
3127689 ATCTTAGTCATTTTCAGTTTTTGACTTGTGGTTTAATCCCTGTTGTTTTACATTTT
1 ATCTCAGTCATTTTCACTTTTTGACTTGTGGTTTAATCCCTCTTGTTTTACATTTT
3127745 CTGACTCATG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.16, C:0.16, G:0.12, T:0.56
Consensus pattern (57 bp):
ATCTCAGTCATTTTCACTTTTTGACTTGTGGTTTAATCCCTCTTGTTTTACATTTTT
Found at i:3127885 original size:197 final size:196
Alignment explanation
Indices: 3127415--3127885 Score: 522
Period size: 197 Copynumber: 2.4 Consensus size: 196
3127405 ATTGTTTTAC
* * * * *
3127415 ATTTTTTGACTCATGCTTTAATC-CTTGTCATTTTTATTTTTTGATTTGTGATTTAATTTTTGTC
1 ATTTTTTGACTCATGATTTAATCTC-AGTCATTTTTATTTTTTGACTTGTGGTTTAA-TCTTGTC
* * ** *
3127479 ATTTTT-ATTGTTTAATCCTAATCATTTTTAGTTTTAGACTTGTGATTTAATTTCTATCATTTTT
64 GTTTTTCATT-TTTAATCCTAATCATTTTCAGTTTTAGACTTGTGATTTAATCCCTATCATTTTC
** * * *
3127543 ATTTTCTGACTTGTGATTTATTCTAGTCATTTTCATTTTTTGACTAGTGGTTTAATCTTGGTCAT
128 ATTTTCTGACTCATGATTTATCCTAGTCATTTTCATTTTTTGACGAGTGGTTTAATCTTGATCAT
3127608 TTTT
193 TTTT
* * * * *
3127612 ATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCACTTTTTGACTTGTGGTTTAATCCTTCTTG
1 ATTTTTTGACTCATGATTTAATCTCAGTCATTTTTATTTTTTGACTTGTGGTTTAAT-CTTGTCG
* * * * * * **
3127677 TTTTACATTTTT-ATCTTAGTCATTTTCAGTTTTTGACTTGTGGTTTAATCCCTGTTGTTTTACA
65 TTTTTCATTTTTAATCCTAATCATTTTCAGTTTTAGACTTGTGATTTAATCCCTATCATTTT-CA
* *
3127741 TTTTCTGACTCATGCTTTAATCCCT-GTCATTTTCATTTTTTGACGAGT-TTTTAATCTCT-ATC
129 TTTTCTGACTCATGATTT-AT-CCTAGTCATTTTCATTTTTTGACGAGTGGTTTAATCT-TGATC
3127803 ATTTTT
191 ATTTTT
* * *
3127809 ATTTTTTGACTCATGATTTAATCTCAGTCATTTTTTTTTTTTGACTCGTGGTATAATCTTGGTCG
1 ATTTTTTGACTCATGATTTAATCTCAGTCATTTTTATTTTTTGACTTGTGGTTTAATCTT-GTCG
3127874 TTTTTCATTTTT
65 TTTTTCATTTTT
3127886 TGACTCATCG
Statistics
Matches: 228, Mismatches: 38, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
196 43 0.19
197 154 0.68
198 29 0.13
199 2 0.01
ACGTcount: A:0.18, C:0.14, G:0.12, T:0.57
Consensus pattern (196 bp):
ATTTTTTGACTCATGATTTAATCTCAGTCATTTTTATTTTTTGACTTGTGGTTTAATCTTGTCGT
TTTTCATTTTTAATCCTAATCATTTTCAGTTTTAGACTTGTGATTTAATCCCTATCATTTTCATT
TTCTGACTCATGATTTATCCTAGTCATTTTCATTTTTTGACGAGTGGTTTAATCTTGATCATTTT
T
Found at i:3129235 original size:258 final size:258
Alignment explanation
Indices: 3128937--3129436 Score: 603
Period size: 258 Copynumber: 1.9 Consensus size: 258
3128927 TTTAATCTCC
**
3128937 ATCATTTTCATTTTTTGACTCGTGGTATAATCCCAATTGTTTCTCATTTTCTAACTCATCATTTA
1 ATCATTTTCATTTGCTGACTCGTGGTATAATCCCAATTGTTT-TCATTTTCTAACTCATCATTTA
* * * **
3129002 ATCCCGATCACTTTCATTT-TTTGACTTGTGGTTTAATGTTAGA-GGTTTTCATTTTCTCACTCA
65 ATCCCGATCACTTTCATTTCTTTGACTTATGATTTAAT-ATAGATCATTTTCATTTTCTCACTCA
** * * *** * *
3129065 GGGTTTAGTC-CTAGTCATTTTCATTTTCTAACTTGTGCTTTAATTTCGGTCATTTTCATTTTTT
129 GGACTTAATCTC-AATCATTTTCATTTTCTAACCCATGCTTTAATCTCGGTCATTTTCATTTTCT
** *
3129129 AACTC-TCATTTTAATCCTGATCATTTTTATTTTCTAACTTGTAATTTAATTCCAAAAAATGTCA
193 AACTCGTCA-TTTAATCAAGATCATTTTTATTTTCTAACTTATAATTTAATTCCAAAAAATGTCA
3129193 TT
257 TT
* * * * * * *
3129195 ATCATTTTCATTTGCTGACTCGTGTTTTAATCTCAATTGTTTTCATTTTTTGACTCGTGATTTAA
1 ATCATTTTCATTTGCTGACTCGTGGTATAATCCCAATTGTTTTCATTTTCTAACTCATCATTTAA
** * * * *
3129260 TTTCGATCATTTTTATTTCTTTGACTTATGATTTAATATAGATCATTTTCATTTTCTGACTCATG
66 TCCCGATCACTTTCATTTCTTTGACTTATGATTTAATATAGATCATTTTCATTTTCTCACTCAGG
* *
3129325 ACTTAATTTCAATCATTTTCATTTTCTAACCCATGGTTTAATCTCGGTCATTTTCATTTTCTAAC
131 ACTTAATCTCAATCATTTTCATTTTCTAACCCATGCTTTAATCTCGGTCATTTTCATTTTCTAAC
* * *
3129390 TCGTGATTTAATCAAGATCATTTTTATTTTCTGACTTATCATTTAAT
196 TCGTCATTTAATCAAGATCATTTTTATTTTCTAACTTATAATTTAAT
3129437 CCTAGTTGTT
Statistics
Matches: 201, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
257 37 0.18
258 161 0.80
259 3 0.01
ACGTcount: A:0.23, C:0.17, G:0.10, T:0.50
Consensus pattern (258 bp):
ATCATTTTCATTTGCTGACTCGTGGTATAATCCCAATTGTTTTCATTTTCTAACTCATCATTTAA
TCCCGATCACTTTCATTTCTTTGACTTATGATTTAATATAGATCATTTTCATTTTCTCACTCAGG
ACTTAATCTCAATCATTTTCATTTTCTAACCCATGCTTTAATCTCGGTCATTTTCATTTTCTAAC
TCGTCATTTAATCAAGATCATTTTTATTTTCTAACTTATAATTTAATTCCAAAAAATGTCATT
Found at i:3132498 original size:20 final size:19
Alignment explanation
Indices: 3132440--3132498 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
3132430 TCTCGATCTT
3132440 TTTATTTTCTGACTTGTGA
1 TTTATTTTCTGACTTGTGA
* *
3132459 TTTAATTT-TGATCAT-T--
1 TTTATTTTCTGA-CTTGTGA
3132475 TTTATTTCTCTGACTTGTGA
1 TTTATTT-TCTGACTTGTGA
3132495 TTTA
1 TTTA
3132499 ATATTAATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 11
0.67 0.09 0.24
Matches are distributed among these distances:
16 6 0.20
17 3 0.10
18 8 0.27
19 9 0.30
20 4 0.13
ACGTcount: A:0.19, C:0.10, G:0.12, T:0.59
Consensus pattern (19 bp):
TTTATTTTCTGACTTGTGA
Found at i:3134005 original size:71 final size:70
Alignment explanation
Indices: 3133863--3134042 Score: 213
Period size: 71 Copynumber: 2.6 Consensus size: 70
3133853 GGTCATTTTT
* * * * *
3133863 ATTTTTTGACTTGTGATTTAATCTGGTCGTTCTCATTT-TATAACTCGTGGATTAATTCCCATTG
1 ATTTTTTGACTTGTGATTTAATCTGATCATTTTTATTTCTATAACTCATGGATTAATTCCCATTG
*
3133927 TTTTC
66 TCTTC
* * *
3133932 ATTTTTTGACTCGTGATTTAATTCTGATCATTTTTATTTCTCTAACTCATGGATTAA-TCCCTGT
1 ATTTTTTGACTTGTGATTTAA-TCTGATCATTTTTATTTCTATAACTCATGGATTAATTCCC-AT
3133996 TGTCTTC
64 TGTCTTC
* *
3134003 ATTTTCTGACTTGTGGTTTAATCTCGATCATTTTT-TTTCT
1 ATTTTTTGACTTGTGATTTAATCT-GATCATTTTTATTTCT
3134043 GACTGGTGGT
Statistics
Matches: 95, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
69 20 0.21
70 25 0.26
71 50 0.53
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (70 bp):
ATTTTTTGACTTGTGATTTAATCTGATCATTTTTATTTCTATAACTCATGGATTAATTCCCATTG
TCTTC
Found at i:3134308 original size:136 final size:136
Alignment explanation
Indices: 3134065--3134310 Score: 293
Period size: 136 Copynumber: 1.8 Consensus size: 136
3134055 CATCTCTGTC
* * * * * * *
3134065 ATTTTTATTTTTTGACTAGTGGTTTAATCCCTATCGTTTTAATTTTTTGACTCGTGTTTTAATCT
1 ATTTTCATTTTTTAACTAGTGGTTCAATCCCTATCATTTTAATTTTTTAACTCATGTTTGAATCT
* * **
3134130 TGGTCATTTTTAGTTTTTTACTCATGATTCAATTTCGGTCATTTTTATTGACTCATAATTTTATT
66 TAGTCATTTTTAGTTTTTTACTCATGATTCAATGTCCATCATTTTTATTGACTCATAATTTTATT
3134195 CCGGTT
131 CCGGTT
* * *
3134201 ATTTTCATTTTTTAACTAGTGGTTCAATCCCTGTCATTTTCATTTTTTAACTCATGATTTGATTC
1 ATTTTCATTTTTTAACTAGTGGTTCAATCCCTATCATTTTAATTTTTTAACTCATG-TTTGAATC
*
3134266 -TAGT-TTTTTTA-TTTCTTTGACTCATGATGT-AATGTCCATCATTTT
65 TTAGTCATTTTTAGTTT-TTT-ACTCATGAT-TCAATGTCCATCATTTT
3134311 CATTTTTTGA
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
134 3 0.03
135 9 0.10
136 72 0.79
137 7 0.08
ACGTcount: A:0.20, C:0.14, G:0.11, T:0.54
Consensus pattern (136 bp):
ATTTTCATTTTTTAACTAGTGGTTCAATCCCTATCATTTTAATTTTTTAACTCATGTTTGAATCT
TAGTCATTTTTAGTTTTTTACTCATGATTCAATGTCCATCATTTTTATTGACTCATAATTTTATT
CCGGTT
Found at i:3134757 original size:82 final size:82
Alignment explanation
Indices: 3134654--3134817 Score: 206
Period size: 82 Copynumber: 2.0 Consensus size: 82
3134644 TTTAATTCCG
* * * *
3134654 ATCATTTTTCTTTTTTAACTCATGTTTTAATCCCGATCATTTTCATTTTTTGACTTGTAATTT-A
1 ATCATTTTTCTTTCTTAACTCATGGTTTAATCCCAATCATTTTCATTTTTTGACTCGTAATTTAA
3134718 TTTCCTATAATTTTTATT
66 TTT-CTATAATTTTTATT
* * ** *
3134736 ATCATTTTTGTTTCCTT-ACTCATGGTTTAATCTCAATCATTTTTGTTTTTTGACTCGTGATTTA
1 ATCATTTTTCTTT-CTTAACTCATGGTTTAATCCCAATCATTTTCATTTTTTGACTCGTAATTTA
*
3134800 ATTTCTATCATTTTTATT
65 ATTTCTATAATTTTTATT
3134818 TCCCTAACTT
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
82 64 0.91
83 6 0.09
ACGTcount: A:0.21, C:0.15, G:0.07, T:0.58
Consensus pattern (82 bp):
ATCATTTTTCTTTCTTAACTCATGGTTTAATCCCAATCATTTTCATTTTTTGACTCGTAATTTAA
TTTCTATAATTTTTATT
Found at i:3135021 original size:22 final size:22
Alignment explanation
Indices: 3134993--3135034 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
3134983 TCTTTTTTAT
*
3134993 TTTTTGACTCATGGTTTAATTA
1 TTTTTGACTCATGATTTAATTA
3135015 TTTTTGACTCATGATTTAAT
1 TTTTTGACTCATGATTTAAT
3135035 CCCAATCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.10, G:0.12, T:0.55
Consensus pattern (22 bp):
TTTTTGACTCATGATTTAATTA
Found at i:3135048 original size:127 final size:128
Alignment explanation
Indices: 3134897--3135140 Score: 314
Period size: 127 Copynumber: 1.9 Consensus size: 128
3134887 TTTTCTAACC
* ** * * *
3134897 CATGGTTTAATCCCGGTCGTTTTCATTTTCTAACCCATGGTTTAA-TCTCTATTGTTTTGATTTT
1 CATGATTTAATCCCAATCATTTTCATTTTCTAACCCATGGTTTAATTCTC-ATCGTTTTCATTTT
* * *
3134961 CTGA-TTCATGATTTAATGTAGGTCTTTTTTATTT-TTTGACTCATGGTTTAATTATTTTTGACT
65 CTGACTT-AGGATTTAATGTAGGTCATTTTTATTTCTCTGACTCATGGTTTAATTATTTTTGACT
* * * *
3135024 CATGATTTAATCCCAATCATTTTCATTTTCTAACTCGTTGTTTAATTCTCATCGTTTTCATTTTT
1 CATGATTTAATCCCAATCATTTTCATTTTCTAACCCATGGTTTAATTCTCATCGTTTTCATTTTC
* *
3135089 TGACTTAGGATTTAATTTTGGTCATTTTTATTTCTCTGACTCATGGTTTAAT
66 TGACTTAGGATTTAATGTAGGTCATTTTTATTTCTCTGACTCATGGTTTAAT
3135141 CCCTGTTGTT
Statistics
Matches: 99, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
127 76 0.77
128 23 0.23
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.52
Consensus pattern (128 bp):
CATGATTTAATCCCAATCATTTTCATTTTCTAACCCATGGTTTAATTCTCATCGTTTTCATTTTC
TGACTTAGGATTTAATGTAGGTCATTTTTATTTCTCTGACTCATGGTTTAATTATTTTTGACT
Found at i:3135610 original size:71 final size:69
Alignment explanation
Indices: 3135535--3135777 Score: 205
Period size: 71 Copynumber: 3.4 Consensus size: 69
3135525 TATCTCGATT
*
3135535 ATTTTCACTTTTTGACTTATGGTTTAATCCTCATTGTTTTACATTTTTTGACTCATGCTTTAATC
1 ATTTTCA-TTTTTGACTCATGGTTTAATCCTCATTGTTTTACATTTTTTGACTCATG-TTTAATC
* *
3135600 CCTACC
64 CCCATC
*
3135606 ATTTTCATTTTTCGA-TGCACT-GTTTAATCCTTGTCA-T-TTTTAC--TTTTTGAGTCATGATT
1 ATTTTCATTTTT-GACT-CA-TGGTTTAATCC---TCATTGTTTTACATTTTTTGACTCATG-TT
3135665 TAATCCCCATC
59 TAATCCCCATC
* * *
3135676 ATTTTTATTTTTTGACTCATGGTATAATCC-CAATCGCTTTT-CATTTTTTGACTCATTGTTTAA
1 ATTTTCA-TTTTTGACTCATGGTTTAATCCTC-ATTG-TTTTACATTTTTTGACTCA-TGTTTAA
* *
3135739 TCTCGATC
62 TCCCCATC
**
3135747 GCTTTCATTTTCTGACTCATGGTTTAATCCT
1 ATTTTCATTTT-TGACTCATGGTTTAATCCT
3135778 GGTGGTTTTC
Statistics
Matches: 139, Mismatches: 15, Indels: 35
0.74 0.08 0.19
Matches are distributed among these distances:
66 1 0.01
67 1 0.01
69 2 0.01
70 55 0.40
71 67 0.48
72 9 0.06
73 1 0.01
74 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50
Consensus pattern (69 bp):
ATTTTCATTTTTGACTCATGGTTTAATCCTCATTGTTTTACATTTTTTGACTCATGTTTAATCCC
CATC
Found at i:3136757 original size:136 final size:137
Alignment explanation
Indices: 3136365--3136758 Score: 367
Period size: 136 Copynumber: 2.9 Consensus size: 137
3136355 CACATTTTCT
* * * * *
3136365 AACTCATCGTTTAATCTTGATCATTTTTCATTTTTTGACTAGTGGTTTCATCTC-GATTATTTTC
1 AACTCGTCATTTAATTTTGATCA-TTTTCATTTTTTGACTAGTGGTTTAATCTCAG-TCATTTTC
* ** * * *
3136429 ATTTTCTTACTCATGGTTTAATC-CCTGTCCTTTTAATTTTCTAACTCGTGGTTTAA-TCTCGAT
64 ATTTTCTTACTTATGGTTTAATCTCC-GTTGTTTTAATTTTTTGACTCGTGATTTAATTCTCGAT
3136492 CTCAGTTTTA
128 CTCAGTTTTA
* * * * *
3136502 AACTCGTGATTTAA-TTTCAGTCTTTTTCATTTTTTGACTAGTGGTTTAATCCCAGTCATGTTCA
1 AACTCGTCATTTAATTTTGA-TCATTTTCATTTTTTGACTAGTGGTTTAATCTCAGTCATTTTCA
* * * ** * *
3136566 TTTTCTGACTTATGATTTGAT-TTAGATTGTTTTTATTTCTTTGACTTC-TGATTTAATTCT-GG
65 TTTTCTTACTTATGGTTTAATCTCCG-TTGTTTTAATTT-TTTGAC-TCGTGATTTAATTCTCGA
* *
3136628 TC-CATTTTTT
127 TCTCAGTTTTA
* * *
3136638 GACTTC-TCATTTAATTTTGATCATTTTCATTTTCTGACTCGTGGTTTAATCTCAGTCATTTTCA
1 AAC-TCGTCATTTAATTTTGATCATTTTCATTTTTTGACTAGTGGTTTAATCTCAGTCATTTTCA
*
3136702 CTTTT-TTACTTATGGTTTAATCTCCGTTGTTTTACATTTTTTGACTCGTGCTTTAAT
65 -TTTTCTTACTTATGGTTTAATCTCCGTTGTTTTA-ATTTTTTGACTCGTGATTTAAT
3136759 CCTTGTTGTT
Statistics
Matches: 204, Mismatches: 40, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
135 3 0.01
136 152 0.75
137 44 0.22
138 5 0.02
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (137 bp):
AACTCGTCATTTAATTTTGATCATTTTCATTTTTTGACTAGTGGTTTAATCTCAGTCATTTTCAT
TTTCTTACTTATGGTTTAATCTCCGTTGTTTTAATTTTTTGACTCGTGATTTAATTCTCGATCTC
AGTTTTA
Found at i:3137750 original size:71 final size:70
Alignment explanation
Indices: 3137617--3137848 Score: 269
Period size: 71 Copynumber: 3.3 Consensus size: 70
3137607 TAATTTCAAA
* * *
3137617 TCATTTT-ATTTTTTGACT-GGTGATTTAATTTTAGT-TGTTTCTATTT-TTTGACT-AGTCATT
1 TCATTTTCATTTTTTGACTCGG-GATTT-ATTTTGGTCT-TTTTTATTTCTTTGACTCA-TGATT
*
3137677 TAATCCCAG
62 TAATGCCAG
*
3137686 TCATTTTCATTTTCTGACTCGGGATTTGATTTTGGTCTTTTTTATTTCTTTGACTCATGATTTAA
1 TCATTTTCATTTTTTGACTCGGGATTT-ATTTTGGTCTTTTTTATTTCTTTGACTCATGATTTAA
*
3137751 TGTC-G
65 TGCCAG
** * *
3137756 ATCATTTTCATTTTTTGACTCATGATTTAGTTTTGATCATTTTTATTTCTTTGACTCATGATTTA
1 -TCATTTTCATTTTTTGACTCGGGATTTA-TTTTGGTCTTTTTTATTTCTTTGACTCATGATTTA
3137821 ATGCCAG
64 ATGCCAG
3137828 TCATTTTCATTTTTTGACTCG
1 TCATTTTCATTTTTTGACTCG
3137849 TCATTCAATT
Statistics
Matches: 141, Mismatches: 14, Indels: 14
0.83 0.08 0.08
Matches are distributed among these distances:
69 7 0.05
70 32 0.23
71 100 0.71
72 2 0.01
ACGTcount: A:0.19, C:0.14, G:0.13, T:0.54
Consensus pattern (70 bp):
TCATTTTCATTTTTTGACTCGGGATTTATTTTGGTCTTTTTTATTTCTTTGACTCATGATTTAAT
GCCAG
Found at i:3137789 original size:18 final size:19
Alignment explanation
Indices: 3137768--3137820 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
3137758 CATTTTCATT
3137768 TTTTGACTCATGATTTA-G
1 TTTTGACTCATGATTTATG
* *
3137786 TTTTGA-TCAT-TTTTATT
1 TTTTGACTCATGATTTATG
3137803 TCTTTGACTCATGATTTA
1 T-TTTGACTCATGATTTA
3137821 ATGCCAGTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 4 0.14
17 5 0.18
18 11 0.39
19 4 0.14
20 4 0.14
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.57
Consensus pattern (19 bp):
TTTTGACTCATGATTTATG
Found at i:3138334 original size:47 final size:47
Alignment explanation
Indices: 3138249--3138338 Score: 117
Period size: 47 Copynumber: 1.9 Consensus size: 47
3138239 ATCCTGGTCA
* * * *
3138249 TTTTCATTTTTTGACTCATAATTTAATTTTGGTAATTTTCATTATCG
1 TTTTCATTTTTTAACTCATAATTTAATCTCGATAATTTTCATTATCG
** *
3138296 TTTTCATTTTTTAACTCATGGTTTAATCTCGATCATTTTCATT
1 TTTTCATTTTTTAACTCATAATTTAATCTCGATAATTTTCATT
3138339 TTCTGACTCA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 36 1.00
ACGTcount: A:0.22, C:0.13, G:0.08, T:0.57
Consensus pattern (47 bp):
TTTTCATTTTTTAACTCATAATTTAATCTCGATAATTTTCATTATCG
Found at i:3138348 original size:82 final size:82
Alignment explanation
Indices: 3138211--3138361 Score: 241
Period size: 82 Copynumber: 1.8 Consensus size: 82
3138201 TTAATTTTGG
* * * *
3138211 TCGTTTTCATTTTTTAACTCGTGTTTTAATCCTGGTCATTTTCATTTTTTGACTCATAATTTAAT
1 TCGTTTTCATTTTTTAACTCATGGTTTAATCCTGATCATTTTCATTTTCTGACTCATAATTTAAT
3138276 TTTGGTAATTTTCATTA
66 TTTGGTAATTTTCATTA
*
3138293 TCGTTTTCATTTTTTAACTCATGGTTTAAT-CTCGATCATTTTCATTTTCTGACTCATGATTTAA
1 TCGTTTTCATTTTTTAACTCATGGTTTAATCCT-GATCATTTTCATTTTCTGACTCATAATTTAA
3138357 TTTTG
65 TTTTG
3138362 ATCATTTTTA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
81 2 0.03
82 61 0.97
ACGTcount: A:0.21, C:0.15, G:0.10, T:0.55
Consensus pattern (82 bp):
TCGTTTTCATTTTTTAACTCATGGTTTAATCCTGATCATTTTCATTTTCTGACTCATAATTTAAT
TTTGGTAATTTTCATTA
Found at i:3139220 original size:71 final size:71
Alignment explanation
Indices: 3139097--3139285 Score: 231
Period size: 71 Copynumber: 2.7 Consensus size: 71
3139087 AATCCTTGTA
* ** * *
3139097 GTTTTCATTTTTTGACGT-ATTGTTTAATCCCTTTCATTTTT-ATTTTTTGACTCATGATTTAAT
1 GTTTTCATTTTTTGAC-TCATGGTTTAATCCCAATCATTTTTCATTTTCTGACTCATCATTTAAT
3139160 CCCAATT
65 CCCAATT
* *
3139167 GTTTTCATTTTTTGACTCGTGGTATAATCCCAATCATTTTTCATTTTCTGACTCATCATTTAATC
1 GTTTTCATTTTTTGACTCATGGTTTAATCCCAATCATTTTTCATTTTCTGACTCATCATTTAATC
3139232 CCAATT
66 CCAATT
* ** * * *
3139238 GCTTAAATTTTTTGACTCATGGTTTAATCCTAGTGA-TTTTCATTTTCT
1 GTTTTCATTTTTTGACTCATGGTTTAATCCCAATCATTTTTCATTTTCT
3139286 CGCTCAAAGT
Statistics
Matches: 102, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
69 1 0.01
70 46 0.45
71 55 0.54
ACGTcount: A:0.21, C:0.17, G:0.10, T:0.52
Consensus pattern (71 bp):
GTTTTCATTTTTTGACTCATGGTTTAATCCCAATCATTTTTCATTTTCTGACTCATCATTTAATC
CCAATT
Found at i:3139582 original size:40 final size:40
Alignment explanation
Indices: 3139526--3139615 Score: 162
Period size: 40 Copynumber: 2.2 Consensus size: 40
3139516 GTAATACCAA
*
3139526 TCATTTTCATTTTCTGACTCGTGATTTAATCTTGGTCATTT
1 TCATTTTC-TTTTCTGACTCATGATTTAATCTTGGTCATTT
3139567 TCATTTTCTTTTCTGACTCATGATTTAATCTTGGTCATTT
1 TCATTTTCTTTTCTGACTCATGATTTAATCTTGGTCATTT
3139607 TCATTTTCT
1 TCATTTTCT
3139616 AACCCACGAT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 40 0.83
41 8 0.17
ACGTcount: A:0.17, C:0.18, G:0.10, T:0.56
Consensus pattern (40 bp):
TCATTTTCTTTTCTGACTCATGATTTAATCTTGGTCATTT
Found at i:3140189 original size:20 final size:18
Alignment explanation
Indices: 3140140--3140189 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
3140130 TTTCATTTTT
3140140 TGACTCATGATTTAGTTC
1 TGACTCATGATTTAGTTC
* *
3140158 TGA-TCAT-TTTTATTTCTC
1 TGACTCATGATTTA-GT-TC
3140176 TGACTCATGATTTA
1 TGACTCATGATTTA
3140190 ATGCCAGTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
16 4 0.16
17 5 0.20
18 8 0.32
19 4 0.16
20 4 0.16
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (18 bp):
TGACTCATGATTTAGTTC
Found at i:3140532 original size:68 final size:70
Alignment explanation
Indices: 3140411--3140576 Score: 176
Period size: 68 Copynumber: 2.4 Consensus size: 70
3140401 ATCATGATTG
* ** * * **
3140411 TTTTCATTTTTTGACTCATGGTATAATCCCGGTCATTTTTCATTTTCTGACTCATTGTTTAATCT
1 TTTT-ATTTTTTGACTCATGGTTTAATCCAAGTCAGTTTTCATTTTCTCACTCAAGGTTTAATC-
3140476 CGA-TCA
64 CGAGTCA
* * *
3140482 TTTT-TTTTTTGACTCATGGTTTAATCCAAGT-GGTTTTCATTTTCTCACTCAAGGTTTAGTCCT
1 TTTTATTTTTTGACTCATGGTTTAATCCAAGTCAGTTTTCATTTTCTCACTCAAGGTTTAATCCG
3140545 AGTCA
66 AGTCA
* *
3140550 TTTTCATTTTCTGACTCATGCTTTAAT
1 TTTT-ATTTTTTGACTCATGGTTTAAT
3140577 TATGGTCATT
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
67 2 0.03
68 31 0.39
69 24 0.30
70 19 0.24
71 4 0.05
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.50
Consensus pattern (70 bp):
TTTTATTTTTTGACTCATGGTTTAATCCAAGTCAGTTTTCATTTTCTCACTCAAGGTTTAATCCG
AGTCA
Found at i:3140740 original size:117 final size:118
Alignment explanation
Indices: 3140553--3140764 Score: 257
Period size: 117 Copynumber: 1.8 Consensus size: 118
3140543 CTAGTCATTT
* * * * *
3140553 TCATTTTCTGACTCATGCTTTAATTATGGTCATTTTCATTTTTTAACTCATGTTTTAATCCTGAC
1 TCATTTTCTGAATCATGCTTTAATTACGATCATTTTCATTTTCTAACTCATGATTTAATCCTGAC
*
3140618 CATTTTCATTT-TCTAGCTTATAATTTAATTTTGATAATTTTCAATATGAATG
66 CATTTTCATTTCTCTAACTTATAATTTAATTTTGATAATTTTCAATATGAATG
* ** **
3140670 TCATTTTCTGAATCATGGTTTAATCT-CGATCATTTTCATTTTCTAACTTGTGATTTAATTTTGA
1 TCATTTTCTGAATCATGCTTTAAT-TACGATCATTTTCATTTTCTAACTCATGATTTAATCCTGA
** * * *
3140734 TGATTTTTATTTCTCTAACTTGTTATTTAAT
65 CCATTTTCATTTCTCTAACTTATAATTTAAT
3140765 AGCAATCGTT
Statistics
Matches: 77, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
117 61 0.79
118 16 0.21
ACGTcount: A:0.25, C:0.14, G:0.09, T:0.53
Consensus pattern (118 bp):
TCATTTTCTGAATCATGCTTTAATTACGATCATTTTCATTTTCTAACTCATGATTTAATCCTGAC
CATTTTCATTTCTCTAACTTATAATTTAATTTTGATAATTTTCAATATGAATG
Found at i:3141570 original size:71 final size:70
Alignment explanation
Indices: 3140913--3141557 Score: 287
Period size: 71 Copynumber: 9.2 Consensus size: 70
3140903 ATCCAGGTCG
* * * * * * *
3140913 TTTTTATTTTTTGACTCATGGTTTAATCCTGGTTGTTTTTATTTTCTGACTCATGATTTAATCTC
1 TTTTCATTTTTTAACTGATGGTTTAATCCTCGTTGTTTTCATTTTCTAACTCATGCTTTAATCTC
*
3140978 GGTCA
66 TGTCA
* * * ** * * *
3140983 TTTTCATTTTCTGACTTG-TGGTTTAATTCC-CATCATTTTCATTTTTTGACTCATGATTTAAT-
1 TTTTCATTTTTTAAC-TGATGGTTTAA-TCCTCGTTGTTTTCATTTTCTAACTCATGCTTTAATC
3141045 TCTAGTCA
64 TCT-GTCA
* * * * * * * * * * *
3141053 TTTTTATTTCTCTGACTCATGGTTTAATCCCCGTTGTCTTCATTTTTTGACTCGTGGTTTAATCC
1 TTTTCATTT-TTTAACTGATGGTTTAATCCTCGTTGTTTTCATTTTCTAACTCATGCTTTAATCT
**
3141118 CAATCA
65 CTGTCA
* * * * ** * * * * * *
3141124 TTTTTCATTTTTTGACT-AGTGGTTTTATCTTGGTCATTCTCATTTTTTGACTCTTGGTTGAATC
1 -TTTTCATTTTTTAACTGA-TGGTTTAATCCTCGTTGTTTTCATTTTCTAACTCATGCTTTAATC
3141188 TC-GATCA
64 TCTG-TCA
* * * * * * *
3141195 TTTTTCATTTTTTGACTGGTGGTTTAATCTTGGTCGTTTTCATTTTCTGACTTATAG-TTTAATC
1 -TTTTCATTTTTTAACTGATGGTTTAATCCTCGTTGTTTTCATTTTCTAACTCAT-GCTTTAATC
*
3141259 -CTATCA
64 TCTGTCA
* * * * * * *
3141265 TTTTAATTTTTTGACTCATGGTTTAATCCTGGTCGTTTTCATTTTTTGACT-A-GCATTTTAATC
1 TTTTCATTTTTTAACTGATGGTTTAATCCTCGTTGTTTTCATTTTCTAACTCATGC--TTTAATC
* *
3141328 CCAGTCA
64 TCTGTCA
* * * ** * * * *
3141335 TTTTCATTTTTTAACTCG-TGATTTAGTTCC-AGTCATTTTTATTTCTTTGACTCATG-ATTAAT
1 TTTTCATTTTTTAACT-GATGGTTTA-ATCCTCGTTGTTTTCATTT-TCTAACTCATGCTTTAAT
3141397 GC-CTGTCA
63 -CTCTGTCA
* * ** * * ** * * * *
3141405 TTTTCATTTTTTGACCCG-TCATTTAAT-TTTGATCATTTTCATTTTCTGACTCGTGGTTTATTC
1 TTTTCATTTTTT-AACTGATGGTTTAATCCTCG-TTGTTTTCATTTTCTAACTCATGCTTTAATC
3141468 TCTGTCA
64 TCTGTCA
*
3141475 TTTTCATTTTTTAACTTATGGTTTAATCCTCGTTGTTTTACATTTTCTAACTCATGCTTTAATC-
1 TTTTCATTTTTTAACTGATGGTTTAATCCTCGTTGTTTT-CATTTTCTAACTCATGCTTTAATCT
3141539 CATGTCA
65 C-TGTCA
3141546 TTTTCATTTTTT
1 TTTTCATTTTTT
3141558 GATGGATTGT
Statistics
Matches: 458, Mismatches: 85, Indels: 63
0.76 0.14 0.10
Matches are distributed among these distances:
66 1 0.00
68 1 0.00
69 69 0.15
70 178 0.39
71 197 0.43
72 11 0.02
73 1 0.00
ACGTcount: A:0.18, C:0.17, G:0.12, T:0.53
Consensus pattern (70 bp):
TTTTCATTTTTTAACTGATGGTTTAATCCTCGTTGTTTTCATTTTCTAACTCATGCTTTAATCTC
TGTCA
Found at i:3141930 original size:31 final size:32
Alignment explanation
Indices: 3141895--3142003 Score: 103
Period size: 36 Copynumber: 3.2 Consensus size: 32
3141885 TGACCCGTGG
3141895 TTTAATCTTGATCATTTTTTTTT-ACTCATGA
1 TTTAATCTTGATCATTTTTTTTTGACTCATGA
* **
3141926 TTTAATTTTGATCATTTTTATTTCTCTGACTTGTGA
1 TTTAATCTTGATCA-TTTT-TTT-T-TGACTCATGA
* *
3141962 TTTAATATCGATCATTTCATTTTTTGACTCATGA
1 TTTAATCTTGATCATTT--TTTTTTGACTCATGA
*
3141996 TTCAATCT
1 TTTAATCT
3142004 CAATCGTTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
31 13 0.21
32 4 0.06
33 3 0.05
34 15 0.24
35 5 0.08
36 21 0.34
37 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.08, T:0.55
Consensus pattern (32 bp):
TTTAATCTTGATCATTTTTTTTTGACTCATGA
Found at i:3142313 original size:71 final size:72
Alignment explanation
Indices: 3142238--3142412 Score: 196
Period size: 71 Copynumber: 2.5 Consensus size: 72
3142228 TCTAACTCAT
**
3142238 GGTTTAATCCCCA-TTGTCTTCATTTTCTGACTCATGGCTTAAT-CTCAATCATTTTTCATTTTC
1 GGTTTAATCCCCAGTCATCTTCATTTTCTGACTCATGGCTTAATCCT-AATCATTTTTCATTTTC
3142301 TAACTGGC
65 TAACTGGC
* * * * *
3142309 GGTTTAAT-CTCAGTCATTTTCATTTTCTGACTCATGGTTTAATCCTAATCGTTTTTCATTTTTT
1 GGTTTAATCCCCAGTCATCTTCATTTTCTGACTCATGGCTTAATCCTAATCATTTTTCATTTTCT
* *
3142373 GACTGGT
66 AACTGGC
* * * *
3142380 GGTTTAATCTCGA-TCATTTTCATTTTTTGACTC
1 GGTTTAATCCCCAGTCATCTTCATTTTCTGACTC
3142413 GTGTTTTAGT
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
70 3 0.03
71 82 0.93
72 3 0.03
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.49
Consensus pattern (72 bp):
GGTTTAATCCCCAGTCATCTTCATTTTCTGACTCATGGCTTAATCCTAATCATTTTTCATTTTCT
AACTGGC
Found at i:3142589 original size:18 final size:18
Alignment explanation
Indices: 3142566--3142622 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
3142556 ATAATGTCGA
3142566 TCATTTTCATTTTTTGAC
1 TCATTTTCATTTTTTGAC
* *
3142584 TCATTTT--TTAATTCT-AG
1 TCATTTTCATT--TTTTGAC
3142601 TCATTTTCATTTTTTGAC
1 TCATTTTCATTTTTTGAC
3142619 TCAT
1 TCAT
3142623 GGTTTAATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
16 2 0.07
17 11 0.37
18 15 0.50
19 2 0.07
ACGTcount: A:0.19, C:0.16, G:0.05, T:0.60
Consensus pattern (18 bp):
TCATTTTCATTTTTTGAC
Found at i:3143408 original size:137 final size:137
Alignment explanation
Indices: 3143128--3143483 Score: 346
Period size: 137 Copynumber: 2.6 Consensus size: 137
3143118 CTTTAACTTC
* * * * *
3143128 TGATTTAATAT-CGATCATTTTCATTTTTTGACTCATGATTTAATCTTGGTCATTTTCATTTTCT
1 TGATTTAAT-TCCGATCATTTT--TTTTTTGACTCATGGTTTAATCCTGTTCATTTTTATTTTTT
* * * * * * *
3143192 AAGC-CATTGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTATAATCGCAATCCTTTTCA
63 GA-CTCA-TGTTTAATCCCAATCATTTTCATTTTCAGACCCATGATATAATCACAATCATTTTCA
* * **
3143256 TTTTCTGACTTG
126 TTTTATAACAGG
*
3143268 TGATTTAA-TCCGGGTCA-TTTTTTTTTGACTCATGGTTTAATCCTGTTCATTTTTATTTTTTGA
1 TGATTTAATTCC-GATCATTTTTTTTTTGACTCATGGTTTAATCCTGTTCATTTTTATTTTTTGA
** *
3143331 CTCATGATTTAATCCCAATCATTTTCATTTTCAGACTTATGATTTAATTCAC-ATCATTTTCATT
65 CTCATG-TTTAATCCCAATCATTTTCATTTTCAGACCCATGATATAA-TCACAATCATTTTCATT
3143395 TTATAACAGG
128 TTATAACAGG
* * * * *
3143405 TGATTTAATTTCGATCATTTTTATTTTTGACTCGTGGTTTAATCCCCGTT-GTCTTTATTTTTTG
1 TGATTTAATTCCGATCATTTTT-TTTTTGACTCATGGTTTAAT-CCTGTTCATTTTTATTTTTTG
3143469 ACTCATGGTTTAATC
64 ACTCAT-GTTTAATC
3143484 TTGACCATTT
Statistics
Matches: 180, Mismatches: 26, Indels: 21
0.79 0.11 0.09
Matches are distributed among these distances:
136 3 0.02
137 101 0.56
138 10 0.06
139 48 0.27
140 18 0.10
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.50
Consensus pattern (137 bp):
TGATTTAATTCCGATCATTTTTTTTTTGACTCATGGTTTAATCCTGTTCATTTTTATTTTTTGAC
TCATGTTTAATCCCAATCATTTTCATTTTCAGACCCATGATATAATCACAATCATTTTCATTTTA
TAACAGG
Found at i:3144100 original size:71 final size:71
Alignment explanation
Indices: 3143953--3144113 Score: 175
Period size: 71 Copynumber: 2.3 Consensus size: 71
3143943 TATCATTTTT
* * * * * *
3143953 ATTTTTTGACTTATGATTTAATCCCTATTGTTTTCATTTTTGGACTCGTGGTATAATCTCGGTCG
1 ATTTTTTGACTCATGATTTAATCCCGATCGCTTTCATTTTTGGACTCATAGTATAATCTCGGTCG
3144018 TTGTTC
66 TTGTTC
* * *
3144024 ATTTTTTGACTCATTG-TTTAATCCCGATCGCTTTCATTTTTTGATTCATAGTTTAAT-TCTGGT
1 ATTTTTTGACTCA-TGATTTAATCCCGATCGCTTTCATTTTTGGACTCATAGTATAATCTC-GGT
*
3144087 GGTT-TTC
64 CGTTGTTC
* *
3144094 ATTTTTTCACTCAGGATTTA
1 ATTTTTTGACTCATGATTTA
3144114 GTCCTAGTCA
Statistics
Matches: 75, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
69 1 0.01
70 21 0.28
71 51 0.68
72 2 0.03
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.52
Consensus pattern (71 bp):
ATTTTTTGACTCATGATTTAATCCCGATCGCTTTCATTTTTGGACTCATAGTATAATCTCGGTCG
TTGTTC
Found at i:3146676 original size:35 final size:35
Alignment explanation
Indices: 3146637--3146736 Score: 112
Period size: 34 Copynumber: 2.9 Consensus size: 35
3146627 TGACTCATGG
* * * *
3146637 TTTAATCTCAATCATTTCCATTTTCTAACTCGTAA
1 TTTAATCTCGATCATTTTCATTTTCTAACCCATAA
* ** *
3146672 TTTAATCTCGGTTGTTTTCA-TTTCTAACCCATAG
1 TTTAATCTCGATCATTTTCATTTTCTAACCCATAA
*
3146706 TTTAATCTCGATCATTTTCATTTTCTGACCC
1 TTTAATCTCGATCATTTTCATTTTCTAACCC
3146737 TTGGTTTAGT
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
34 28 0.54
35 24 0.46
ACGTcount: A:0.23, C:0.23, G:0.07, T:0.47
Consensus pattern (35 bp):
TTTAATCTCGATCATTTTCATTTTCTAACCCATAA
Found at i:3146754 original size:69 final size:70
Alignment explanation
Indices: 3146613--3146757 Score: 175
Period size: 69 Copynumber: 2.1 Consensus size: 70
3146603 ATTTTCATTA
* * * *
3146613 TTGTTTTCATTTCCTGACTCATGGTTTAATCTCAATCATTTCCATTTTCTAACTCGTAATTTAAT
1 TTGTTTTCATTTCCTAACCCATAGTTTAATCTCAATCATTTCCATTTTCTAACCCGTAATTTAAT
*
3146678 CTCGG
66 CTAGG
* * * * ** *
3146683 TTGTTTTCATTT-CTAACCCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCTTGGTTTAGT
1 TTGTTTTCATTTCCTAACCCATAGTTTAATCTCAATCATTTCCATTTTCTAACCCGTAATTTAAT
3146747 CTAGG
66 CTAGG
3146752 TTGTTT
1 TTGTTT
3146758 CTATTTTTTG
Statistics
Matches: 63, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
69 51 0.81
70 12 0.19
ACGTcount: A:0.19, C:0.20, G:0.12, T:0.49
Consensus pattern (70 bp):
TTGTTTTCATTTCCTAACCCATAGTTTAATCTCAATCATTTCCATTTTCTAACCCGTAATTTAAT
CTAGG
Found at i:3147218 original size:41 final size:41
Alignment explanation
Indices: 3147170--3147256 Score: 156
Period size: 41 Copynumber: 2.1 Consensus size: 41
3147160 ATCTTAGTCG
*
3147170 TTTTCATTTTTTGACTCATGGTTTAATCCCTATCATTGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCTATCATTGTAA
*
3147211 TTTTCATTTTTTGACTCATGGTTTAATCCCTATCATTTTAA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCTATCATTGTAA
3147252 TTTTC
1 TTTTC
3147257 TAACTCATGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.20, C:0.18, G:0.08, T:0.54
Consensus pattern (41 bp):
TTTTCATTTTTTGACTCATGGTTTAATCCCTATCATTGTAA
Found at i:3147218 original size:76 final size:76
Alignment explanation
Indices: 3146850--3147275 Score: 185
Period size: 71 Copynumber: 5.9 Consensus size: 76
3146840 TTTAATTTTG
* * * * * * *
3146850 GTCATTTTCATTTTTTGACCCATGGTTTAAT-CCTATTCGTTTTCATTTTTTTACTCATGATTTA
1 GTCATTTTCATTTTCTGACTCATGGTTTAATCCCTA-TCATTTTAATTTTCTAACTCATGGTTTA
*
3146914 AT---T-TGA--
65 ATCCCTATCATT
* * * * * * *
3146920 GTCATTTTTATTTTCTAACTCGT-GTTTAAT-CCTGGTCATTTTTATTTTCTAACTCGTGATTTA
1 GTCATTTTCATTTTCTGACTCATGGTTTAATCCCT-ATCATTTTAATTTTCTAACTCATGGTTTA
*
3146983 A----TAT--TA
65 ATCCCTATCATT
* * * * * * *
3146989 GTCATTTTCATTTTTTGACTCATGGTTTAAT-TCTCATCATTTTCATTTTTTGACTCGTGATTTA
1 GTCATTTTCATTTTCTGACTCATGGTTTAATCCCT-ATCATTTTAATTTTCTAACTCATGGTTTA
*
3147053 AT---TAT--GT
65 ATCCCTATCATT
* * * * * * *
3147060 -TCATTTTTATTTCTCTAACTCGTGGTTTAATCCCCA--ATGTCTTCATTTTATGACTCATGGTT
1 GTCATTTTCATTT-TCTGACTCATGGTTTAATCCCTATCAT-T-TTAATTTTCTAACTCATGGTT
*
3147122 CAAT-CCTGATCA--
63 TAATCCCT-ATCATT
* ** * * * * * *
3147134 -T--TTTTCATTTTCTGATTGGTGGTTTCAT-CTTAGTCGTTTTCATTTTTTGACTCATGGTTTA
1 GTCATTTTCATTTTCTGACTCATGGTTTAATCCCTA-TCATTTTAATTTTCTAACTCATGGTTTA
3147195 ATCCCTATCATT
65 ATCCCTATCATT
*
3147207 GTCATTTTCATTTTTTGACTCATGGTTTAATCCCTATCATTTTAATTTTCTAACTCATGGTTTAA
1 GTCATTTTCATTTTCTGACTCATGGTTTAATCCCTATCATTTTAATTTTCTAACTCATGGTTTAA
3147272 TCCC
66 TCCC
3147276 GATGGTTTTC
Statistics
Matches: 278, Mismatches: 53, Indels: 44
0.74 0.14 0.12
Matches are distributed among these distances:
68 1 0.00
69 56 0.20
70 67 0.24
71 81 0.29
72 13 0.05
73 2 0.01
74 4 0.01
76 51 0.18
77 3 0.01
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.52
Consensus pattern (76 bp):
GTCATTTTCATTTTCTGACTCATGGTTTAATCCCTATCATTTTAATTTTCTAACTCATGGTTTAA
TCCCTATCATT
Found at i:3148200 original size:20 final size:19
Alignment explanation
Indices: 3148175--3148232 Score: 52
Period size: 20 Copynumber: 3.2 Consensus size: 19
3148165 GATCATTTTC
3148175 ATTTTTTGACTCATGGTTTA
1 ATTTTTTGACTCAT-GTTTA
*
3148195 A-TTTTT-A-TCAT-TTTC
1 ATTTTTTGACTCATGTTTA
*
3148210 ATTTTCTGACTCATGATTTA
1 ATTTTTTGACTCATG-TTTA
3148230 ATT
1 ATT
3148233 CTTGTCATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
15 4 0.13
16 4 0.13
17 5 0.17
18 5 0.17
19 5 0.17
20 7 0.23
ACGTcount: A:0.22, C:0.12, G:0.09, T:0.57
Consensus pattern (19 bp):
ATTTTTTGACTCATGTTTA
Found at i:3149067 original size:31 final size:31
Alignment explanation
Indices: 3149031--3149095 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
3149021 ATCGTTTTTG
** *
3149031 TTTTTTGACTCATGGTTTAATCTCGATCATT
1 TTTTTTGACTCATCATTTAATCTCGATAATT
* *
3149062 TTTTTTGACTCGTCATTTAATTTCGATAATT
1 TTTTTTGACTCATCATTTAATCTCGATAATT
3149093 TTT
1 TTT
3149096 ATATCTCTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.20, C:0.14, G:0.11, T:0.55
Consensus pattern (31 bp):
TTTTTTGACTCATCATTTAATCTCGATAATT
Found at i:3149335 original size:69 final size:68
Alignment explanation
Indices: 3149150--3149342 Score: 201
Period size: 69 Copynumber: 2.8 Consensus size: 68
3149140 GCTCGTGAAG
* * * * *
3149150 TAATCTCAGTCGTTTTCATTTTCTAACCCATGGTTTAATCTCGGTCATTTTCATTTTCTGACCCA
1 TAATCTCGGTCATTTTTA-TTTCTGACACATGGTTTAATCTCGGTCATTTTCATTTTCTGACCCA
3149215 TGTT
65 TGTT
* * *
3149219 TAATCTCGGTCATTTTTATTTCTGACACATGGTTTAATCTCGATCATTTTCATTTTTTGACTCAT
1 TAATCTCGGTCATTTTTATTTCTGACACATGGTTTAATCTCGGTCATTTTCATTTTCTGACCCAT
3149284 GATT
66 G-TT
* ** * * * *
3149288 TCAT-TCGAGTTGTTTTTATTTTTGACTCGTGGTTTAATC-CTGGTCATTTTTATTT
1 TAATCTCG-GTCATTTTTATTTCTGACACATGGTTTAATCTC-GGTCATTTTCATTT
3149343 GCTAACTTGT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
68 47 0.45
69 58 0.55
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (68 bp):
TAATCTCGGTCATTTTTATTTCTGACACATGGTTTAATCTCGGTCATTTTCATTTTCTGACCCAT
GTT
Found at i:3151338 original size:83 final size:81
Alignment explanation
Indices: 3151230--3151567 Score: 485
Period size: 83 Copynumber: 4.2 Consensus size: 81
3151220 GAGTATTTAC
*
3151230 TTTCCAAAGTTCGTT-CCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTACCTCTGTT
1 TTTCCAAAG-TCGTTACCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTCGTGGTACCTCTGTT
3151294 TAGAGGAGCAATTTATT
65 TAGAGGAGCAATTTATT
*
3151311 TTTCCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTACCTCTGT
1 TTTCCAAAGTCGT--TACCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTCGTGGTACCTCTGT
3151376 TTAGAGGAGCAATTTATT
64 TTAGAGGAGCAATTTATT
3151394 TTTCCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTTCGTTGG---CTCT
1 TTTCCAAAGTCGT--TACCTCTGTTGAGAGGAGCAATTTACTTTCCAAAG-TCG-TGGTACCTCT
*
3151456 G-TTAGAGGAGCAATTTA-C
62 GTTTAGAGGAGCAATTTATT
* * *
3151474 TTTCCAAAGTTCGTTGCCTCTGTTTAGAGGAGC-ATTTATCTTTCCAAAGTCGTGGTGCCTCTGT
1 TTTCCAAAG-TCGTTACCTCTGTTGAGAGGAGCAATTTA-CTTTCCAAAGTCGTGGTACCTCTGT
3151538 TTAGAGGAGCAATTTATT
64 TTAGAGGAGCAATTTATT
3151556 TTT-CAAAGTCGT
1 TTTCCAAAGTCGT
3151568 AGAGCCTCTG
Statistics
Matches: 240, Mismatches: 5, Indels: 25
0.89 0.02 0.09
Matches are distributed among these distances:
77 3 0.01
78 8 0.03
79 27 0.11
80 22 0.09
81 50 0.21
82 9 0.04
83 115 0.48
84 3 0.01
85 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (81 bp):
TTTCCAAAGTCGTTACCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTCGTGGTACCTCTGTTT
AGAGGAGCAATTTATT
Found at i:3151588 original size:41 final size:41
Alignment explanation
Indices: 3151224--3151567 Score: 447
Period size: 41 Copynumber: 8.5 Consensus size: 41
3151214 GTCTAGGAGT
* *
3151224 ATTTACTTTCCAAAGTTCGT--T-CCTCTGTTGAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCA
3151263 ATTTACTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
* *
3151304 ATTTATTTTTCCAAAGTCGTGGTACCTCTGTTGAGAGGAGCA
1 ATTTACTTTT-CAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
3151346 ATTTACTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
* *
3151387 ATTTATTTTTCCAAAGTCGTGGTACCTCTGTTGAGAGGAGCA
1 ATTTACTTTT-CAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
*
3151429 ATTTACTTTCCAAAGTTCGTTGG---CTCTG-TTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCG-TGGTACCTCTGTTTAGAGGAGCA
* *
3151468 ATTTACTTTCCAAAGTTCGT--TGCCTCTGTTTAGAGGAGC-
1 ATTTACTTTTCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCA
* *
3151507 ATTTATCTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTA-CTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
*
3151549 ATTTATTTTTCAAAGTCGT
1 ATTTACTTTTCAAAGTCGT
3151568 AGAGCCTCTG
Statistics
Matches: 277, Mismatches: 13, Indels: 28
0.87 0.04 0.09
Matches are distributed among these distances:
38 5 0.02
39 57 0.21
40 26 0.09
41 101 0.36
42 85 0.31
43 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (41 bp):
ATTTACTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
Found at i:3151596 original size:1 final size:1
Alignment explanation
Indices: 3151590--3151619 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
3151580 AAGAGGAGCT
3151590 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3151620 GTCGAGTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:3151746 original size:20 final size:20
Alignment explanation
Indices: 3151721--3151779 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
3151711 CAGGTCCGGG
3151721 CCCGGATCAATTGGGCCTGA
1 CCCGGATCAATTGGGCCTGA
3151741 CCCGGATCAATTGGGCCTGA
1 CCCGGATCAATTGGGCCTGA
* *
3151761 CCCAGATCATTTGGGCCTG
1 CCCGGATCAATTGGGCCTG
3151780 GCCCAAATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.22
Consensus pattern (20 bp):
CCCGGATCAATTGGGCCTGA
Found at i:3151848 original size:16 final size:15
Alignment explanation
Indices: 3151816--3151856 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
3151806 TTTTTACCCG
*
3151816 TATTTTTTATT-TTT
1 TATTTTTTTTTATTT
3151830 TATTTTTATTTTATTT
1 TATTTTT-TTTTATTT
3151846 TATTTTTTTTT
1 TATTTTTTTTT
3151857 CTCTCTTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 7 0.29
15 7 0.29
16 10 0.42
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (15 bp):
TATTTTTTTTTATTT
Found at i:3152100 original size:11 final size:12
Alignment explanation
Indices: 3152080--3152112 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
3152070 TTATCTAGAT
*
3152080 TTTTTTTTTTAA
1 TTTTTATTTTAA
3152092 -TTTTATTTTAA
1 TTTTTATTTTAA
3152103 TTTTTATTTT
1 TTTTTATTTT
3152113 GGAGGGCTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTTATTTTAA
Found at i:3152497 original size:31 final size:31
Alignment explanation
Indices: 3152426--3152498 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
3152416 AATTTCCAGA
* *
3152426 TTCCGGCGAAAATTCCGGCGACTTTTGAATT
1 TTCCGGCGACAATTCCGGCGACTTTTGAAGT
3152457 TTCCGGCGACAATTCCGGCGAAC-TTTGAAGT
1 TTCCGGCGACAATTCCGGCG-ACTTTTGAAGT
3152488 TTCCGGCGACA
1 TTCCGGCGACA
3152499 GACCCAGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 37 0.95
32 2 0.05
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.27
Consensus pattern (31 bp):
TTCCGGCGACAATTCCGGCGACTTTTGAAGT
Found at i:3152584 original size:19 final size:19
Alignment explanation
Indices: 3152560--3152604 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
3152550 TCCGGCCAAT
3152560 TTCCGGCGAAATTCCCAGA
1 TTCCGGCGAAATTCCCAGA
* *
3152579 TTCCGGCGAATTTTCCAGA
1 TTCCGGCGAAATTCCCAGA
*
3152598 ATCCGGC
1 TTCCGGC
3152605 ACCGGCGTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.24
Consensus pattern (19 bp):
TTCCGGCGAAATTCCCAGA
Found at i:3152834 original size:5 final size:5
Alignment explanation
Indices: 3152824--3152866 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
3152814 TTCAGCCCCT
*
3152824 CCGAG CCGAG CCGAG CCGAG CCGAG CCGCA- CCAAG CCGAG CCG
1 CCGAG CCGAG CCGAG CCGAG CCGAG CCG-AG CCGAG CCGAG CCG
3152867 CGATCCGAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 1 0.03
5 32 0.94
6 1 0.03
ACGTcount: A:0.21, C:0.44, G:0.35, T:0.00
Consensus pattern (5 bp):
CCGAG
Found at i:3152835 original size:15 final size:15
Alignment explanation
Indices: 3152824--3152878 Score: 67
Period size: 15 Copynumber: 3.5 Consensus size: 15
3152814 TTCAGCCCCT
3152824 CCGAGCCGAGCCG-A
1 CCGAGCCGAGCCGCA
3152838 GCCGAGCCGAGCCGCA
1 -CCGAGCCGAGCCGCA
*
3152854 CCAAGCCGAGCCGCGA
1 CCGAGCCGAGCCGC-A
3152870 TCCGAGCCG
1 -CCGAGCCG
3152879 CTCCAGGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 26 0.74
16 2 0.06
17 7 0.20
ACGTcount: A:0.20, C:0.44, G:0.35, T:0.02
Consensus pattern (15 bp):
CCGAGCCGAGCCGCA
Found at i:3152915 original size:16 final size:16
Alignment explanation
Indices: 3152896--3152953 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
3152886 TTTTTTTTTT
*
3152896 TTTTTTTTTTTTTGAA
1 TTTTTTTTTATTTGAA
*
3152912 TTTTTTTTTATTTGAC
1 TTTTTTTTTATTTGAA
* *
3152928 TTTGATTTTGATCTTG-A
1 TTT-TTTTTTAT-TTGAA
3152945 TTTTTTTTT
1 TTTTTTTTT
3152954 CTTTATTCTT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
16 21 0.64
17 9 0.27
18 3 0.09
ACGTcount: A:0.12, C:0.03, G:0.09, T:0.76
Consensus pattern (16 bp):
TTTTTTTTTATTTGAA
Found at i:3153576 original size:156 final size:156
Alignment explanation
Indices: 3152959--3153558 Score: 1065
Period size: 156 Copynumber: 3.8 Consensus size: 156
3152949 TTTTTCTTTA
* *
3152959 TTCTTTAATTAATCCGACGACGGAGCCTCTACAAGTAAAAACAGTAGTTTTTCTTGCATACTCCT
1 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGT-GAAACAGTAGTTTTTCTTGCATACTCCT
*
3153024 GAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCGAT
65 GAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGAT
* * *
3153089 AATTAATTACTTGGCTGATTTTGATTTTTTTT
130 AATTAATTAATTGGTTGATCTTGA-----TTT
3153121 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
1 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
3153186 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
66 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
3153251 ATTAATTAATTGGTTGATCTTGATTT
131 ATTAATTAATTGGTTGATCTTGATTT
3153277 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
1 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
*
3153342 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTTGATA
66 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
3153407 ATTAATTAATTGGTTGATCTTGATTT
131 ATTAATTAATTGGTTGATCTTGATTT
* *
3153433 TTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCTTG
1 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
3153498 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTC
66 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTC
3153559 AACAACTAAC
Statistics
Matches: 428, Mismatches: 10, Indels: 6
0.96 0.02 0.01
Matches are distributed among these distances:
156 281 0.66
161 112 0.26
162 35 0.08
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.38
Consensus pattern (156 bp):
TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
ATTAATTAATTGGTTGATCTTGATTT
Found at i:3153743 original size:16 final size:16
Alignment explanation
Indices: 3153724--3153755 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
3153714 TTTTAGGGAC
3153724 CCTTAAGCTTAGGTGT
1 CCTTAAGCTTAGGTGT
3153740 CCTTAAGCTTAGGTGT
1 CCTTAAGCTTAGGTGT
3153756 TCCCTAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (16 bp):
CCTTAAGCTTAGGTGT
Found at i:3158222 original size:45 final size:45
Alignment explanation
Indices: 3156634--3158220 Score: 536
Period size: 45 Copynumber: 35.2 Consensus size: 45
3156624 GGCCATTTTC
** ** *
3156634 TGTCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGG-CTGGCTTT
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
* * * ** ***
3156679 TTTCGATGGTGGTTGAGGCAACCGCCAGCACCAAAGCCCAGCACA
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * ** * *
3156724 T-ACTGATGGTGTTCGAGGCAACCGCCCATACCAAAGG-CCAGCCTG
1 TGTC-GATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
** * * * * * * *
3156769 TACCAATGGTGCTCAAGGCAACCACCCGTACCAAGGG-CCATCTTC
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
* * * * *
3156814 T-ACTGATGGTGGTCGAGGCAACCGCCCGCACCAAGACCC-GATACG
1 TGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT-TG
* * * * *
3156859 TGTCGATGATGTTCGAGGCAACTGCCCGCACCAGGGGCCAGCATG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * * * * * *
3156904 TG-CTGATTGTGTTCGATGCAACCGCCCGTACCAGGGGCCATCTTC
1 TGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
** * * ** * *
3156949 TACCGATAGTGGTCGAGGTAAGAGCCCGCACCAAGGG-TCGGCTTG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
** * * ** * **
3156994 TACCGGTGGTGGTTGAGGCAACCATCCGCACCAAGGCCCAGCACG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * * * * * * * *
3157039 TGTCGATGGTGTTCAAGGTAATCGCTCGCACTAGGGGCTAGCATG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * * * * *
3157084 TG-CTGATGGTGTTCGACGTAACCGCCCGCACCAGGGGCCATCTTC
1 TGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * ** * * *
3157129 TGCCGATGGTGGTCGAGGGAAGAGCTCGCACCAAAGG-CCGGCTTG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
* * * * **
3157174 TGTCGATGGTGCTCGAGGCAACCGCCAGCACCAAGGCCTAGCACG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * * * * * * * *
3157219 TGCCGATAGTGTTTGAGGCAACCACCCACACTAAGGCCCAGCATG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * * * * *
3157264 TGTCGATGGTAGTCGAGGCAACCGCCAGCACCAAGGACCAACATG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* *** ** * * * * *
3157309 TGTCAATGGCATTCGATACAACCACCCACACCAAGGG-CTATCTTA
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
** * ** * * * * *
3157354 TACCGATGGTGGTCGAGGCAATCATCCACATCAGGGGCCATCTTC
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* ** * * * *
3157399 TGTCGATTGTGGTCGAGGCAAGAGCCCACACCAAGGG-CTAGTTTA
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
* * * * * * *
3157444 TGCCGATGGTGCTCGAGGCAACTGCCCGTACCGAGGG-CCATCGTC
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
* * ** * *
3157489 TGTCGATTGTGGTTGAGGCAAGAGCTCGCACCAAGGG-CCGGCTTG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
* * * * * ** * * *
3157534 AGTCGATGGTGCTTGAGGTAATCGCCTACACCAGGGGCCATCTTC
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * * * * * * *
3157579 TATCGATGGTGGTCGAGGTAATCGCCCACATCAAGGCCTAGCATG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * ** * * * *
3157624 TGTCGATGGTGTTCGAGACAATTGCCCGTACTAAGGCCCAGCATG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * *** *
3157669 TGTCGATGGTGTTCAACTTAACCGCCCGCACCATGGG-CCATCTTG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGGCCCAGCTTG
* * * * * * ** ***
3157714 TGTCAATGGTGGTCGAGGTAATCACCTGCACCAAGGCCTTGCACA
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * * * * * *
3157759 AG-CTGATGGTGTTCGAGGCAACCGCCCGTA-CTGGGAGCCATCTTC
1 TGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAGGG-CCCAGCTTG
* * * * * *
3157804 TGTCGATGGTGGTCGAGGTAATCGTCTGCACCAAGGCCCCAGCATG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
* * * *** * * *
3157850 TGTCGATGATGTTCGATGCAACTATCCACACCAAGGG-CCATCTTC
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
* * * *
3157895 TGTCGATGGTGGTCGAGGCAACTGCCTGCACCAAGGG-CCGGCTGG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
* * ** * * *
3157940 TGTCGATGGTGCTTGAGGCAATGGCCCGCACCAAGGCCC-GATACG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT-TG
* * * * * * * *
3157985 TGCCGATGGTGTTCGAGGCAATCGCTCGCACCAAGGCTC-GGTACG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT-TG
** * * * * * *
3158030 TACCGATGGTGGTCGAGGCAACTGCCTGTACCATGACCCAGCATG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
** * * * * * *
3158075 TACCGATGGTGCTCGATGCAACCGTCCGCACTAGGGGCCATCTTG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
* * * *
3158120 TGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGG-CCTGCATG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTG
* * *
3158165 TGTCGATAGTGATCGAGGCAACCGCCCACACCAGGGCCCAGCTTG
1 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
3158210 TGTCGATGGTG
1 TGTCGATGGTG
3158221 ATTGAGACAA
Statistics
Matches: 1120, Mismatches: 389, Indels: 66
0.71 0.25 0.04
Matches are distributed among these distances:
44 39 0.03
45 1016 0.91
46 63 0.06
47 2 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (45 bp):
TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTG
Found at i:3159478 original size:171 final size:174
Alignment explanation
Indices: 3158913--3159507 Score: 477
Period size: 171 Copynumber: 3.5 Consensus size: 174
3158903 TGTGCATCCC
* * * * ** * * *
3158913 GCCTCTCTGGCCGGCGTAATGCCTGCCCGCTCATTTTGTAGGTTAACTTAGGCATACGGAGTTCA
1 GCCTCTCTGGCTGGC-TAATGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGAAGTTCA
* * * * * * * * *
3158978 TTCCCAATCTAA--A-ATCAGACCAAATCAAGGGTT-ATGATAGCAGGACC--TACAGCGAGATT
65 TTCCTAGTCTAAGCACA-CAGATCGAACCAAGGGTTGCT-ACAGTAGGACCAGTACAGCGAGATC
* * * *
3159037 GACAGGATACAGAGGGGGGCCGGGTCGATCCCCGACTTACGGATTCT
128 GACAGCACACAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTCT
* * *
3159084 GCCTCTCTGGCTGGCTGAGTGCCCGTACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCTGGCTGGCT-AATGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGAAGTTCA
* * * *
3159149 TTCCTAGTCTAAGCATACGGATCGGACCAAGGGTTGCTATAGTAGGACCAGTA-A-C-AGGATCG
65 TTCCTAGTCTAAGCACACAGATCGAACCAAGGGTTGCTACAGTAGGACCAGTACAGCGA-GATCG
* ** * * * *
3159211 ACAGCACACAGAAGGGGACCTAGTTGATCCCCGGCTTGCGTATTCT
129 ACAGCACACAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTCT
* * * * *
3159257 ACCTCTCCGG-TCCGCTAAGTGCCCGCATGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTC
1 GCCTCTCTGGCT-GGCTAA-TGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGAAGTTC
* * * *
3159321 ATTCC-ATGTCTAAGC-CCCAG-TCGAACCGAGGGTTG-TGGCAGTAGGATC-G-ACAGCGAGAT
64 ATTCCTA-GTCTAAGCACACAGATCGAACCAAGGGTTGCT-ACAGTAGGACCAGTACAGCGAGAT
* * * *
3159380 CGACAGCACGCAGAGGGGGATCGGGTCGATCCCTGACTTACGCATTAT
127 CGACAGCACACAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTCT
* * **
3159428 GCCTCTCTGGCTGGCTCAATTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-AGAGTTC
1 GCCTCTCTGGCTGGCT-AATGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGA-AGTTC
* *
3159492 ATTCCCAATCTAAGCA
64 ATTCCTAGTCTAAGCA
3159508 TACGGAGTTC
Statistics
Matches: 338, Mismatches: 66, Indels: 39
0.76 0.15 0.09
Matches are distributed among these distances:
169 1 0.00
170 5 0.01
171 186 0.55
172 11 0.03
173 130 0.38
174 3 0.01
175 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.25
Consensus pattern (174 bp):
GCCTCTCTGGCTGGCTAATGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGAAGTTCAT
TCCTAGTCTAAGCACACAGATCGAACCAAGGGTTGCTACAGTAGGACCAGTACAGCGAGATCGAC
AGCACACAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTCT
Found at i:3159515 original size:26 final size:26
Alignment explanation
Indices: 3159479--3159531 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3159469 GTTGACTTAG
3159479 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* * *
3159505 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3159531 G
1 G
3159532 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:3167374 original size:45 final size:45
Alignment explanation
Indices: 3167307--3167397 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
3167297 TACCCGCACT
** * *
3167307 AAGGCTCGGCATGTGCTGATGGTGTTCGAGGCAACCGCCCACACC
1 AAGGCTCGGCATGTGCCAATGGTGTTCAACGCAACCGCCCACACC
*
3167352 AAGGCTCGGTATGTGCCAATGGTGTTCAACGCAACCGCCCACACC
1 AAGGCTCGGCATGTGCCAATGGTGTTCAACGCAACCGCCCACACC
3167397 A
1 A
3167398 GGGGCCATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (45 bp):
AAGGCTCGGCATGTGCCAATGGTGTTCAACGCAACCGCCCACACC
Found at i:3167442 original size:45 final size:45
Alignment explanation
Indices: 3167365--3167468 Score: 109
Period size: 45 Copynumber: 2.3 Consensus size: 45
3167355 GCTCGGTATG
* * * *
3167365 TGCCAATGGTGTTCAACGCAACCGCCCACACCAGGGGCCATCTTC
1 TGCCAATGGTGGTCAACGCAACAGCCCACACCAAGGGCCAGCTTC
* * * * * *
3167410 TGCCAATGGTGGTCAAGGCAAGAGCTCGCACCAAGGGCCGGCTTG
1 TGCCAATGGTGGTCAACGCAACAGCCCACACCAAGGGCCAGCTTC
*
3167455 TGCCGATGGTGGTC
1 TGCCAATGGTGGTC
3167469 GAGGTAACCA
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (45 bp):
TGCCAATGGTGGTCAACGCAACAGCCCACACCAAGGGCCAGCTTC
Found at i:3172404 original size:18 final size:18
Alignment explanation
Indices: 3172381--3172426 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
3172371 GGCTCACCTG
3172381 CTGGTGCGCCTGATGTGC
1 CTGGTGCGCCTGATGTGC
*
3172399 CTGGTGCGCCTTATGTGC
1 CTGGTGCGCCTGATGTGC
*
3172417 CTGGTACGCC
1 CTGGTGCGCC
3172427 CGTTCAGGGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.07, C:0.30, G:0.35, T:0.28
Consensus pattern (18 bp):
CTGGTGCGCCTGATGTGC
Found at i:3172527 original size:45 final size:45
Alignment explanation
Indices: 3172472--3173238 Score: 447
Period size: 45 Copynumber: 17.1 Consensus size: 45
3172462 TCTACCTATT
* ** * * *
3172472 GTGGTTGAGGCAAGAGCCCACACCAAGGGTCGGCTTGTGTCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGTCGATG
* * * * * *
3172517 GTGGTCGAGGCAACCGCCCACACTAGGGGCCATCATCTGCCAATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGTCGATG
* *
3172562 GTGGTCGAGGCAACCACCCACACCAAGGCCCAGCATGTGTCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGTCGATG
* ** *
3172607 GTGTTCGAGGCAACCGCCTGCACCAA-GGCTCAGCATGTGCCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGC-CAGCATGTGTCGATG
* * * * * * *
3172652 GTGTTCGAGGCAACCGCCTACACCAGGGGCCATCTTGTATCGATA
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGTCGATG
* *** * * *
3172697 GTGGTCGAGGCAACCACCTGTACCAAGGCCCAACACGTGTCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGTCGATG
* * * * * * * * *
3172742 GTGTTCGAGGCATCCGTCCGCA-CTAGGAGCCATCTTCTATCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGG-GCCAGCATGTGTCGATG
*
3172787 GTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATGTGTCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGTCGATG
* ** * * * *
3172832 GTGTTCGATACAACTGCCCACACC-AGAGGCCATCTTGTGCCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAG-GGCCAGCATGTGTCGATG
** ** * * * *
3172877 GTGGTATAGGCAACTACTCACACGAAGGGTC-G-ATTGGTGCCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCA-T-GTGTCGATG
* * * *
3172922 GTGCTCGAGGTAACAGCCCACACCAA-GGCCTGGCA-GTGTCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCC-AGCATGTGTCGATG
* * ** * *
3172966 GTGTTCGAGGCAACCACCGGCACCAA-GGCTCTGCATGTGCCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGC-CAGCATGTGTCGATG
* *** * * * * *
3173011 GTGGTTGAGGCAACCGCTTGCACCACGGCCCAGCATATGCCAATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGTCGATG
* * * * * * * * *
3173056 GTGTTCGATGTAACTGCCCGCACCAAGGGTCATCTTGTGCCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGTCGATG
* ** * * * * **
3173101 GTGGTCGAGGCAACCGTCCGTACCAAGGGTCGGCTTATACCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGTCGATG
* ** * * *
3173146 GTGGTTGAGGCAACCGCCTGCACCAAGGGTC-GTCATGTGCCAATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGGCCAG-CATGTGTCGATG
* * * *
3173191 GTGATCAAGGCAACCGCCCACACC-AGGGCCCAGCTTGTGCCGATG
1 GTGGTCGAGGCAACCGCCCACACCAAGGG-CCAGCATGTGTCGATG
3173236 GTG
1 GTG
3173239 ATTGAGGTAA
Statistics
Matches: 551, Mismatches: 154, Indels: 34
0.75 0.21 0.05
Matches are distributed among these distances:
44 51 0.09
45 486 0.88
46 13 0.02
47 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.19
Consensus pattern (45 bp):
GTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGTCGATG
Found at i:3172701 original size:135 final size:134
Alignment explanation
Indices: 3172492--3173238 Score: 537
Period size: 135 Copynumber: 5.5 Consensus size: 134
3172482 CAAGAGCCCA
* * * * * * * *
3172492 CACCAAGGGTCGGCTTGTGTCGATGGTGGTCGAGGCAACCGCCCACACTAGGGGCCATCATCTGC
1 CACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGGCCATCTTGTGT
* * *
3172557 CAATGGTGGTCGAGGCAACCACCCACACCAAGGCCCAGCATGTGTCGATGGTGTTCGAGGCAACC
66 CGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGATGGTGTT-GAGGCAACC
3172622 GCCTG
130 GCCTG
* * *
3172627 CACCAAGGCTCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCTACACCAGGGGCCATCTTGTAT
1 CACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGGCCATCTTGTGT
* * * * * * *
3172692 CGATAGTGGTCGAGGCAACCACCTGTACCAAGGCCCAACACGTGTCGATGGTGTTCGAGGCATCC
66 CGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGATGGTGTT-GAGGCAACC
3172757 GTCC-G
130 G-CCTG
* * * * * ** * * * *
3172762 CACTAGGAGC-CATCTTCTATCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATGTG
1 CACCAAG-GCTCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGGCCATCTTGTG
* ** ** * * *
3172826 TCGATGGTGTTCGATACAACTGCCCACACCAGAGG-CCATCTTGTGCCGATGGTGGTAT-AGGCA
65 TCGATGGTGGTCGAGGCAACCACCCGCACCA-AGGCCCAGCATGTGCCGATGGT-GT-TGAGGCA
**
3172889 A-CTACT-
127 ACCGCCTG
* * * * *
3172895 CACACGAAGGGTC-G-ATTGGTGCCGATGGTGCTCGAGGTAACAGCCCACACCA-AGGCC-TGGC
1 CAC-C-AAGGCTCAGCA-T-GTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGGCCAT--C
* * * * *
3172956 -AGTGTCGATGGTGTTCGAGGCAACCACCGGCACCAAGGCTCTGCATGTGCCGATGGTGGTTGAG
60 TTGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGATGGT-GTTGAG
*
3173020 GCAACCGCTTG
124 GCAACCGCCTG
* * * * * * * * * * * *
3173031 CACCACGGCCCAGCATATGCCAATGGTGTTCGATGTAACTGCCCGCACCAAGGGTCATCTTGTGC
1 CACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGGCCATCTTGTGT
** * ** * * * *
3173096 CGATGGTGGTCGAGGCAACCGTCCGTACCAAGGGTCGGCTTATACCGATGGTGGTTGAGGCAACC
66 CGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGATGGT-GTTGAGGCAACC
3173161 GCCTG
130 GCCTG
* * * * * *
3173166 CACCAAGGGTC-GTCATGTGCCAATGGTGATCAAGGCAACCGCCCACACCAGGGCCCAGCTTGTG
1 CACCAAGGCTCAG-CATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGGCCATCTTGTG
*
3173230 CCGATGGTG
65 TCGATGGTG
3173239 ATTGAGGTAA
Statistics
Matches: 474, Mismatches: 115, Indels: 46
0.75 0.18 0.07
Matches are distributed among these distances:
133 8 0.02
134 91 0.19
135 360 0.76
136 14 0.03
137 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (134 bp):
CACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGGCCATCTTGTGT
CGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTGAGGCAACCG
CCTG
Found at i:3173014 original size:134 final size:135
Alignment explanation
Indices: 3172782--3173024 Score: 323
Period size: 134 Copynumber: 1.8 Consensus size: 135
3172772 CATCTTCTAT
* * * *
3172782 CGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATGTGTCGATGGTGTTCGATACAACT
1 CGATGGTGCTCGAGGCAACAGCCCACACCAAGGCCCAGCATGTGTCGATGGTGTTCGAGACAACC
* *
3172847 GCCCACACCAGAGGCCATCTTGTGCCGATGGTGGTAT-AGGCAACTACTCACACGAAGGGTCGAT
66 ACCCACACCAGAGGCCATCATGTGCCGATGGTGGT-TGAGGCAACTACTCACACGAAGGGTCGAT
3172911 TGGTGC
130 TGGTGC
* ** *
3172917 CGATGGTGCTCGAGGTAACAGCCCACACCAAGGCCTGGCA-GTGTCGATGGTGTTCGAGGCAACC
1 CGATGGTGCTCGAGGCAACAGCCCACACCAAGGCCCAGCATGTGTCGATGGTGTTCGAGACAACC
**
3172981 ACCGGCACCA-AGGCTC-TGCATGTGCCGATGGTGGTTGAGGCAAC
66 ACCCACACCAGAGGC-CAT-CATGTGCCGATGGTGGTTGAGGCAAC
3173025 CGCTTGCACC
Statistics
Matches: 93, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
133 6 0.06
134 52 0.56
135 35 0.38
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.19
Consensus pattern (135 bp):
CGATGGTGCTCGAGGCAACAGCCCACACCAAGGCCCAGCATGTGTCGATGGTGTTCGAGACAACC
ACCCACACCAGAGGCCATCATGTGCCGATGGTGGTTGAGGCAACTACTCACACGAAGGGTCGATT
GGTGC
Found at i:3174249 original size:26 final size:26
Alignment explanation
Indices: 3174200--3174249 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3174190 AGGCATACGG
3174200 AGTTCATTCCCAGCCTAAGCATATAA
1 AGTTCATTCCCAGCCTAAGCATATAA
* *
3174226 AGTTCATTCCTAGTCTAAGCATAT
1 AGTTCATTCCCAGCCTAAGCATAT
3174250 GGACCAGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (26 bp):
AGTTCATTCCCAGCCTAAGCATATAA
Found at i:3174610 original size:26 final size:26
Alignment explanation
Indices: 3174560--3174612 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3174550 GTTGACTTAG
* **
3174560 GCATATAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3174586 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3174612 G
1 G
3174613 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:3182354 original size:45 final size:45
Alignment explanation
Indices: 3182305--3184066 Score: 731
Period size: 45 Copynumber: 39.2 Consensus size: 45
3182295 TCTACTGATA
* * *
3182305 GTGGTCGAGGTAAGAGCCAGCACCAAGGGCCAGCTTGTG-CTGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTC-GATG
* *** * *
3182350 GTGGTCGAGGCAACCGCCCGTTTCAAGGGCCATCTTCTGTCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* ** * * ** *
3182395 GTGGTCGAGGCAATC-GCCCGTATTAAAGCCCAGCACGTGTCGACG
1 GTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * *
3182440 GTGTTCGAGGCAACCA-CCCGCACCAAAGGTCAGCTTGTGCCGATG
1 GTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * *
3182485 GTGCTCGAGGCAATAGCCCGCACCAAGGGCCATCTTTTATCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * *
3182530 GTTGTCGAGGTAACCA-CCTGCACCAAGGCCCAGCATGTGCCGATG
1 GTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * *
3182575 GTGTTCG-GGCAACCA-CCCGTACCAAGGGCCTGCATGTGTCGATG
1 GTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* ** * * * * *
3182619 GTGTTTAAGGCAACCGCCCGTACCAGGGGCCATCTTCTGTCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * *
3182664 GTGGTCAAGGCAAGAGCCCGCACCAAGGGCTAGCTTTTGTCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * * * *
3182709 GTGGTTGAGGTAACCGCCCGCACCAAGAGCCATCTTCTGCCAATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * ** *
3182754 GTTGTCGAGGTAACCGCCCGCACCAAGGCCCAACACGTGCCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * * ** *
3182799 GTGTTTGAAGG-AACTGCTCGCACCAGGGGCCAGCATGTACCAATG
1 GTGGTCG-AGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * * * *
3182844 GTGTTTGACGTAACCGCCCACACCAAGGGCCATCTTCTGTCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * * *
3182889 GTAGTCGAGGCAACCGTCCGCACCAGGGGCCAGCATGTGCCAATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* *** * * * *
3182934 GTGTTCGACATAACCA-CCCACACCAGGGGCCATCTTCTGTCGATG
1 GTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * * *
3182979 GTGGTTGAGGCAAGAGCCTGCACCAAAGGCC-GACTTATGCCGATT
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAG-CTTGTGTCGATG
* * ** ** **
3183024 GTGCTCGAGGCAACCGCCCGCA-CAAAAGCCTAGCAAGTCCCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCC-AGCTTGTGTCGATG
* * * *
3183069 GT-GTCCGAGGCAACTGCTCGCACCAAGGCCCAGCATGTGTCGATG
1 GTGGT-CGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * ** * * *
3183114 ATGGTCGAGGCAACTGCCAGCAGTAAGGCCCAGCATGTATCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * ** * * *
3183159 CTGTTTCG-CGCAACTGCCCATACCAGGGGCCATCTTGTGCCGATG
1 GTG-GTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * * ** *
3183204 GTGGTCGAGGCAACCGCCCGTACTAGGGGCCATCTTCTACCGATT
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * ** ** *
3183249 GTGGTCAAGGCAAGAGCCTACACCAAGGGCCAGCTTGTACCAATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* ** * * * * *
3183294 GTGGTCGAGGCAACCGCCCGTGCCAGGGGCCATCTTCTGCCAATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * *
3183339 GTGGTCGAGACAATC-GCCCGCACCAAGGTCCAGCATGTGTCGATG
1 GTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * *
3183384 GTGTTCGAGGCAACTGCTCGCACCAAGGCCCAGCATGTGCCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * *
3183429 GTGCTCGAGGCAACCGCCCGCACCAA-GGCCTAGCATGTG-CAAATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCC-AGCTTGTGTC-GATG
* * * * * *
3183474 GTGTTCGATGCAATC-GTCCGCACC-AGGGACCATCTTGTGCCAATG
1 GTGGTCGAGGCAA-CAGCCCGCACCAAGGG-CCAGCTTGTGTCGATG
* * * *** * *
3183519 GTGGTCGAGGCAACTA-CCTGCACCAAGGCCCGGCACATATTGATG
1 GTGGTCGAGGCAAC-AGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * * * * **
3183564 GTGTTCAAGGTAACCGCCCACA-CTAGGTGCCATCTTATACCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGG-GCCAGCTTGTGTCGATG
* * * * *
3183609 GTGGTCGAGGCAACCGCTCGCACCAAGGCCCAACATGTG-CTGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTC-GATG
* * * * * * * * *
3183654 GTGTTTGATGCAACCGCCCGCACCAGGGGCCATCTTATGCCAATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * * *
3183699 GTGGTTGAGGTAACCGCTCACACCAAGGGCC-GACTGGTGCCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAG-CTTGTGTCGATG
* * * *
3183744 GTGCTCGAGGCAACGGCCCACACCAA-GGCCA-CGTACGTGTCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGC-T-TGTGTCGATG
* * * * * * * * *
3183789 GTGTTCAAGGCAACCGCCCCCGCCAA-GGCTCGGCATGTGCCAATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGC-CAGCTTGTGTCGATG
* * * *
3183834 GTGGTCGAGGCAACCGCCCGTACC-AGAGGCCATCTTGTGCCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAG-GGCCAGCTTGTGTCGATG
* * * * * * *
3183879 GTGGTCTAGGCAATC-GCTCGCACCAAGGGTCGGCTTATGCCAATG
1 GTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * *
3183924 GTGGTCGA-GCTAATC-GCCAGCACCAAGGGTCGGCATGTGCCGATG
1 GTGGTCGAGGC-AA-CAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
* * * * * * *
3183969 GTGATCAAGGCGACCGCCTGTACC-AGGGCTCAGCTTGTGCCGATG
1 GTGGTCGAGGCAACAGCCCGCACCAAGGGC-CAGCTTGTGTCGATG
* * ** ** *
3184014 GCGGTCGAGGTAAGTGCCCATACCAAAGGG-CAGCCTGTGTCGATG
1 GTGGTCGAGGCAACAGCCCGCACC-AAGGGCCAGCTTGTGTCGATG
*
3184059 ATGGTCGA
1 GTGGTCGA
3184067 TGCATGTGCC
Statistics
Matches: 1294, Mismatches: 372, Indels: 102
0.73 0.21 0.06
Matches are distributed among these distances:
43 1 0.00
44 77 0.06
45 1171 0.90
46 40 0.03
47 5 0.00
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (45 bp):
GTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGTCGATG
Found at i:3193350 original size:20 final size:20
Alignment explanation
Indices: 3193325--3193364 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
3193315 TGGCTTCGCA
3193325 CCACTCAGGCATAGTTCACC
1 CCACTCAGGCATAGTTCACC
3193345 CCACTCAGGCATAGTTCACC
1 CCACTCAGGCATAGTTCACC
3193365 ATCTTTCGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.40, G:0.15, T:0.20
Consensus pattern (20 bp):
CCACTCAGGCATAGTTCACC
Found at i:3194608 original size:106 final size:106
Alignment explanation
Indices: 3194362--3194975 Score: 339
Period size: 106 Copynumber: 5.8 Consensus size: 106
3194352 GGAGGCCATC
* * *
3194362 AAATCACGAGTCAAAAAATGAAAAA-GATC-GAGATTAGACCACT-AGTCAAAAAATGAAAACAA
1 AAATCACAAGTCAGAAAAT-AAAAACGATCAG-GATTAAACCA-TGAGTCAAAAAATGAAAACAA
* * * * * *
3194424 CT--GGATCTAAATCACGAGTCAG-AAAATAAAATTGACCAAAATT
63 -TAGGGAT-TAAACCACAAGTCAGAAAAATAAAAATGATCGAAATG
** * * * * * *
3194467 AAATCATGAGTC-TAAAATCAAAAATGATCAAGATTAAACCACGAGTCAAAAAATTAAAACCATA
1 AAATCACAAGTCAGAAAAT-AAAAACGATCAGGATTAAACCATGAGTCAAAAAATGAAAACAATA
* * * *
3194531 GGGATTAAACCACAAGTTAG-AGAATGAAAATGA-CTGAGATG
65 GGGATTAAACCACAAGTCAGAAAAATAAAAATGATC-GAAATG
* * *
3194572 AAA-CGACTAA-TCAGAAAATGAAAAACGATCGGGATTAAACCATGAGTCAAAAAATGAAGATAA
1 AAATC-AC-AAGTCAGAAAAT-AAAAACGATCAGGATTAAACCATGAGTCAAAAAATGAAAACAA
* *
3194635 TGGGGATTAAACCACAAGTCAGAAAAATAAAAATGATCGAAATT
63 TAGGGATTAAACCACAAGTCAGAAAAATAAAAATGATCGAAATG
* * *
3194679 AAATCACAAGTCAGAAAATAAAAACGA-CAGGATTTAAACCATGAGTCAGAAAATGAAAACGATT
1 AAATCACAAGTCAGAAAATAAAAACGATCAGGA-TTAAACCATGAGTCAAAAAATGAAAACAATA
* * * * * ** * * *
3194743 GAGATTAAATCTCGAGTCA-AAAAATGAAAACAACCAAAATT
65 GGGATTAAACCACAAGTCAGAAAAATAAAAATGATCGAAATG
* * * * * * * * ** **
3194784 AAA--ACATGGACAGAAAATGAAAACGATCGGGATT-AACCATGGGTTAGAAAATGAACATGACC
1 AAATCACA-AGTCAGAAAATAAAAACGATCAGGATTAAACCATGAGTCAAAAAATGAAAACAATA
* * ** * * ** *
3194846 GAGATTAAATCATGAGTCA-AAAAATTAAAACGATCGGTATT
65 GGGATTAAACCACAAGTCAGAAAAATAAAAATGATCGAAATG
* * ** * * *
3194887 AAATCACAAGCCA-ATGAAATAAAAATGATCAAAATTAAATCATGAGTCAGAAAATGAAAACGAT
1 AAATCACAAGTCAGA--AAATAAAAACGATCAGGATTAAACCATGAGTCAAAAAATGAAAACAAT
* *
3194951 -GAAGATTAAACCACAAATCAGAAAA
64 AG-GGATTAAACCACAAGTCAGAAAA
3194976 TGAAAACGAT
Statistics
Matches: 401, Mismatches: 85, Indels: 44
0.76 0.16 0.08
Matches are distributed among these distances:
103 62 0.15
104 34 0.08
105 119 0.30
106 151 0.38
107 33 0.08
108 2 0.00
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.19
Consensus pattern (106 bp):
AAATCACAAGTCAGAAAATAAAAACGATCAGGATTAAACCATGAGTCAAAAAATGAAAACAATAG
GGATTAAACCACAAGTCAGAAAAATAAAAATGATCGAAATG
Found at i:3194657 original size:71 final size:71
Alignment explanation
Indices: 3194582--3194772 Score: 187
Period size: 71 Copynumber: 2.7 Consensus size: 71
3194572 AAACGACTAA
* * * *
3194582 TCAGAAAATGAAAAACGATCGGGATTAAACCATGAGTCAAAAAATGAAGATAATG-GGGA-TTAA
1 TCAGAAAATGAAAAACGATCGAGATTAAATCATGAGTCAAAAAATGAA-A-AACGAAGGATTTAA
3194645 ACCACAAG
64 ACCACAAG
* * ** *
3194653 TCAGAAAAAT-AAAAATGATCGAAATTAAATCACAAGTCAGAAAAT-AAAAACGACAGGATTTAA
1 TCAG-AAAATGAAAAACGATCGAGATTAAATCATGAGTCAAAAAATGAAAAACGA-AGGATTTAA
**
3194716 ACCATGAG
64 ACCACAAG
*
3194724 TCAGAAAATG-AAAACGATTGAGATTAAATC-TCGAGTCAAAAAATGAAAA
1 TCAGAAAATGAAAAACGATCGAGATTAAATCAT-GAGTCAAAAAATGAAAA
3194773 CAACCAAAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
68 3 0.03
69 1 0.01
70 37 0.39
71 50 0.52
72 5 0.05
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.18
Consensus pattern (71 bp):
TCAGAAAATGAAAAACGATCGAGATTAAATCATGAGTCAAAAAATGAAAAACGAAGGATTTAAAC
CACAAG
Found at i:3194982 original size:35 final size:35
Alignment explanation
Indices: 3194366--3194985 Score: 241
Period size: 35 Copynumber: 17.7 Consensus size: 35
3194356 GCCATCAAAT
* * *
3194366 CACGAGTCAAAAAATGAAAAAGATCG-AGATTAGAC
1 CACGAGTCAGAAAATGAAAACGAT-GAAGATTAAAC
* * * *
3194401 CACTAGTCAAAAAATGAAAACAACTG--GATCTAAAT
1 CACGAGTCAGAAAATGAAAACGA-TGAAGAT-TAAAC
* ** * *
3194436 CACGAGTCAGAAAAT-AAAATTGACCAAAATTAAAT
1 CACGAGTCAGAAAATGAAAA-CGATGAAGATTAAAC
* * * * *
3194471 CATGAGTC-TAAAATCAAAAATGATCAAGATTAAAC
1 CACGAGTCAGAAAAT-GAAAACGATGAAGATTAAAC
* * * *
3194506 CACGAGTCAAAAAATTAAAACCAT-AGGGATTAAAC
1 CACGAGTCAGAAAATGAAAACGATGA-AGATTAAAC
* * * * *
3194541 CACAAGTTAGAGAATGAAAATGACTG-AGATGAAAC
1 CACGAGTCAGAAAATGAAAACGA-TGAAGATTAAAC
* * * *
3194576 GACTAATCAGAAAATGAAAAACGATCG-GGATTAAAC
1 CACGAGTCAGAAAATG-AAAACGAT-GAAGATTAAAC
* * * ** **
3194612 CATGAGTCAAAAAATGAAGATAATGGGGATTAAAC
1 CACGAGTCAGAAAATGAAAACGATGAAGATTAAAC
* * * *
3194647 CACAAGTCAGAAAAATAAAAATGATCGAA-ATTAAAT
1 CACGAGTCAG-AAAATGAAAACGAT-GAAGATTAAAC
* * * *
3194683 CACAAGTCAGAAAATAAAAACGA-CAGGATTTAAAC
1 CACGAGTCAGAAAATGAAAACGATGAAGA-TTAAAC
* *
3194718 CATGAGTCAGAAAATGAAAACGATTG-AGATTAAAT
1 CACGAGTCAGAAAATGAAAACGA-TGAAGATTAAAC
* * * ** * *
3194753 CTCGAGTCAAAAAATGAAAACAACCAAAATTAAAA
1 CACGAGTCAGAAAATGAAAACGATGAAGATTAAAC
* * *
3194788 CATG-GACAGAAAATGAAAACGATCG-GGATT-AAC
1 CACGAGTCAGAAAATGAAAACGAT-GAAGATTAAAC
* * * * * * *
3194821 CATGGGTTAGAAAATGAACATGACCG-AGATTAAAT
1 CACGAGTCAGAAAATGAAAACGA-TGAAGATTAAAC
* * * *
3194856 CATGAGTCAAAAAATTAAAACGATCG--GTATTAAAT
1 CACGAGTCAGAAAATGAAAACGAT-GAAG-ATTAAAC
* * * * * * *
3194891 CACAAGCCA-ATGAAATAAAAATGATCAAAATTAAAT
1 CACGAGTCAGA--AAATGAAAACGATGAAGATTAAAC
*
3194927 CATGAGTCAGAAAATGAAAACGATGAAGATTAAAC
1 CACGAGTCAGAAAATGAAAACGATGAAGATTAAAC
* *
3194962 CACAAATCAGAAAATGAAAACGAT
1 CACGAGTCAGAAAATGAAAACGAT
3194986 AATGAAAATT
Statistics
Matches: 436, Mismatches: 117, Indels: 64
0.71 0.19 0.10
Matches are distributed among these distances:
33 7 0.02
34 54 0.12
35 282 0.65
36 91 0.21
37 2 0.00
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.19
Consensus pattern (35 bp):
CACGAGTCAGAAAATGAAAACGATGAAGATTAAAC
Found at i:3195089 original size:361 final size:363
Alignment explanation
Indices: 3194648--3195604 Score: 1228
Period size: 362 Copynumber: 2.6 Consensus size: 363
3194638 GGATTAAACC
* *
3194648 ACAAGTCAGAAAAATAAAAATGA-TCGAAATTAAATCACAAGTCAGAAAATAAAAACGACAGGAT
1 ACAAGTTAG-AAAATGAAAATGACTCGAAATTAAATCACAAGTCAGAAAATAAAAACGACAGGAT
* *
3194712 TTAAACCATGAGTCAGAAAATGAAAACGATTGAGATTAAATC-TCGAGTCAAAAAATGAAAACAA
65 TTAAACCACGAGTCAGAAAATGAAAACGATCGAGATTAAATCAT-GAGTCAAAAAATGAAAACAA
*
3194776 CCAAAATTAAAACAT-GGACAGAAAATGAAAACGATCGGGATTAACCATGGGTTAGAAAATGAAC
129 CCAAAATTAAAACATGGGACAGAAAATGAAAACGATCGGGATTAACCATGGGTTAGAAAATGAAA
* * *
3194840 ATGACCGAGATTAAATCATGAGTCAAAAAATTAAAACGATCGGTATTAAATCACAAGCCAATGAA
194 ATGACCAAGATTAAATCATGAGTCAAAAAATGAAAACGATCGGTATTAAATCACAAGCCAATAAA
*
3194905 ATAAAAATGATCAAAATTAAATCATGAGTCAGAAAATGAAAACGAT-GAAGATTAAACCACAAAT
259 ATAAAAATGATCAAAATTAAATCATGAGTCAGAAAATGAAAACGATCG-AGATAAAACCACAAAT
3194969 CAGAAAATGAAAACGATAATGAAAATTACCAAAATTAAATT
323 CAGAAAATGAAAACGATAATGAAAATTACCAAAATTAAATT
* * ***
3195010 ACAAGTTAGAAAATGAAAATGACT-TAAATTAAATCACAAGTCAGATAATAAAAACGGTGGGATT
1 ACAAGTTAGAAAATGAAAATGACTCGAAATTAAATCACAAGTCAGAAAATAAAAACGACAGGATT
* * *
3195074 TAGACCACGAGTCAGAAAATGAAAAGGATCGAGATTAAATCATGAGTCAAAAAATGAAAACAATC
66 TAAACCACGAGTCAGAAAATGAAAACGATCGAGATTAAATCATGAGTCAAAAAATGAAAACAACC
*
3195139 AAAATTAAAACATGGGTCAGAAAATGAAAACGATCGGGATTAACCATGGGTTAGAAAATGAAAAT
131 AAAATTAAAACATGGGACAGAAAATGAAAACGATCGGGATTAACCATGGGTTAGAAAATGAAAAT
* * *
3195204 GATCAAGATTGAATCATGAGTCGAAAAATGAAAACGATCGGTATTAAATCACAAGCCAATAAAAT
196 GACCAAGATTAAATCATGAGTCAAAAAATGAAAACGATCGGTATTAAATCACAAGCCAATAAAAT
* * *
3195269 AAAAATGATCAAAATTAAATCATGAGTCGGAAAATGAAAATGATCGAGATAAAACCACAAATTAG
261 AAAAATGATCAAAATTAAATCATGAGTCAGAAAATGAAAACGATCGAGATAAAACCACAAATCAG
3195334 AAAATGAAAACGATAATGAAAATTACCAAAATTAAATT
326 AAAATGAAAACGATAATGAAAATTACCAAAATTAAATT
* * * * * * *
3195372 ACGAGTTAGAAAATGAAAATGACT-GAGATGAAACCACCAGTTAGAAAATGAAAAATGATCAGGA
1 ACAAGTTAGAAAATGAAAATGACTCGAAATTAAATCACAAGTCAGAAAAT-AAAAACGA-CAGGA
* * * * * * * * * * * **
3195436 -TTAAACCATGAGTTAGAAAACGAAGACAATGGGGATTAAAGCATTACTCAGAAAAATAAAAATG
64 TTTAAACCACGAGTCAGAAAATGAAAACGATCGAGATTAAATCATGAGTCA-AAAAATGAAAACA
* * *** * * * * * * * *
3195500 ACCTAAATTAAATCACAAGTCAGATAATAAAAACG-GCGAGAATTAAACCACGAGTTAGAGAATG
128 ACCAAAATTAAAACATGGGACAGAAAATGAAAACGATCG-GGATT-AACCATGGGTTAGAAAATG
* * * *
3195564 AAAACGATCGAGATTAAATCACGAGTCAAAAAAATGAAAAC
191 AAAATGACCAAGATTAAATCATGAGTC-AAAAAATGAAAAC
3195605 AACCAAAATT
Statistics
Matches: 516, Mismatches: 69, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
361 118 0.23
362 256 0.50
363 47 0.09
364 44 0.09
365 39 0.08
366 12 0.02
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.20
Consensus pattern (363 bp):
ACAAGTTAGAAAATGAAAATGACTCGAAATTAAATCACAAGTCAGAAAATAAAAACGACAGGATT
TAAACCACGAGTCAGAAAATGAAAACGATCGAGATTAAATCATGAGTCAAAAAATGAAAACAACC
AAAATTAAAACATGGGACAGAAAATGAAAACGATCGGGATTAACCATGGGTTAGAAAATGAAAAT
GACCAAGATTAAATCATGAGTCAAAAAATGAAAACGATCGGTATTAAATCACAAGCCAATAAAAT
AAAAATGATCAAAATTAAATCATGAGTCAGAAAATGAAAACGATCGAGATAAAACCACAAATCAG
AAAATGAAAACGATAATGAAAATTACCAAAATTAAATT
Found at i:3195121 original size:35 final size:35
Alignment explanation
Indices: 3195082--3195347 Score: 214
Period size: 35 Copynumber: 7.6 Consensus size: 35
3195072 TTTAGACCAC
*
3195082 GAGTCAGAAAATGAAAAGGATCGAGATTAAATCAT
1 GAGTCAGAAAATGAAAACGATCGAGATTAAATCAT
* * * * *
3195117 GAGTCAAAAAATGAAAACAATCAAAATTAAAACAT
1 GAGTCAGAAAATGAAAACGATCGAGATTAAATCAT
* * *
3195152 GGGTCAGAAAATGAAAACGATCGGGATT-AACCAT
1 GAGTCAGAAAATGAAAACGATCGAGATTAAATCAT
* * * * *
3195186 GGGTTAGAAAATGAAAATGATCAAGATTGAATCAT
1 GAGTCAGAAAATGAAAACGATCGAGATTAAATCAT
*
3195221 GAGTC-GAAAAATGAAAACGATCG-GTATTAAATCAC
1 GAGTCAG-AAAATGAAAACGATCGAG-ATTAAATCAT
* * * * * * *
3195256 AAGCCAATAAAATAAAAATGATCAAAATTAAATCAT
1 GAGTC-AGAAAATGAAAACGATCGAGATTAAATCAT
* * * * *
3195292 GAGTCGGAAAATGAAAATGATCGAGATAAAACCAC
1 GAGTCAGAAAATGAAAACGATCGAGATTAAATCAT
* * *
3195327 AAATTAGAAAATGAAAACGAT
1 GAGTCAGAAAATGAAAACGAT
3195348 AATGAAAATT
Statistics
Matches: 178, Mismatches: 47, Indels: 12
0.75 0.20 0.05
Matches are distributed among these distances:
34 31 0.17
35 122 0.69
36 25 0.14
ACGTcount: A:0.52, C:0.11, G:0.18, T:0.20
Consensus pattern (35 bp):
GAGTCAGAAAATGAAAACGATCGAGATTAAATCAT
Found at i:3195328 original size:71 final size:70
Alignment explanation
Indices: 3195082--3195328 Score: 239
Period size: 69 Copynumber: 3.5 Consensus size: 70
3195072 TTTAGACCAC
* * ** * **
3195082 GAGTCAGAAAATGAAAAGGATCGAGATTAAATCATGAGTCAAAAAATGAAAACAATCAAAATTAA
1 GAGTCAGAAAATGAAAACGATCGAGATTAAACCACAAGCCAAAAAATGAAAATGATCAAAATTAA
*
3195147 AACAT
66 ATCAT
* * *** ** * * *
3195152 GGGTCAGAAAATGAAAACGATCGGGATT-AACCATGGGTTAGAAAATGAAAATGATCAAGATTGA
1 GAGTCAGAAAATGAAAACGATCGAGATTAAACCACAAGCCAAAAAATGAAAATGATCAAAATTAA
3195216 ATCAT
66 ATCAT
* *
3195221 GAGTC-GAAAAATGAAAACGATCG-GTATTAAATCACAAGCCAATAAAATAAAAATGATCAAAAT
1 GAGTCAG-AAAATGAAAACGATCGAG-ATTAAACCACAAGCCAA-AAAATGAAAATGATCAAAAT
3195284 TAAATCAT
63 TAAATCAT
* * *
3195292 GAGTCGGAAAATGAAAATGATCGAGATAAAACCACAA
1 GAGTCAGAAAATGAAAACGATCGAGATTAAACCACAA
3195329 ATTAGAAAAT
Statistics
Matches: 145, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
68 2 0.01
69 55 0.38
70 31 0.21
71 55 0.38
72 2 0.01
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.19
Consensus pattern (70 bp):
GAGTCAGAAAATGAAAACGATCGAGATTAAACCACAAGCCAAAAAATGAAAATGATCAAAATTAA
ATCAT
Found at i:3195442 original size:36 final size:35
Alignment explanation
Indices: 3195375--3195455 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 35
3195365 TTAAATTACG
*
3195375 AGTTAGAAAATGAAAATGACTGAGATGAAACCACC
1 AGTTAGAAAATGAAAATGACAGAGATGAAACCACC
* **
3195410 AGTTAGAAAATGAAAAATGATCAG-GATTAAACCATG
1 AGTTAGAAAATG-AAAATGA-CAGAGATGAAACCACC
3195446 AGTTAGAAAA
1 AGTTAGAAAA
3195456 CGAAGACAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
35 12 0.30
36 26 0.65
37 2 0.05
ACGTcount: A:0.51, C:0.10, G:0.20, T:0.20
Consensus pattern (35 bp):
AGTTAGAAAATGAAAATGACAGAGATGAAACCACC
Found at i:3195651 original size:35 final size:34
Alignment explanation
Indices: 3195612--3195721 Score: 105
Period size: 34 Copynumber: 3.2 Consensus size: 34
3195602 AACAACCAAA
3195612 ATTAAACCATGGGTAAGAAAATGAAAACGATTGGG
1 ATTAAACCATGGGT-AGAAAATGAAAACGATTGGG
** ** *
3195647 ATT-AACCATGGGTTAGAAAATGAAAATTACCGAG
1 ATTAAACCATGGG-TAGAAAATGAAAACGATTGGG
* * * *
3195681 ATTAAATCATGAGTCGACAAATGAAAACGATTGGT
1 ATTAAACCATGGGTAGA-AAATGAAAACGATTGGG
3195716 ATTAAA
1 ATTAAA
3195722 TCACAAGCCA
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
34 30 0.52
35 28 0.48
ACGTcount: A:0.45, C:0.10, G:0.21, T:0.24
Consensus pattern (34 bp):
ATTAAACCATGGGTAGAAAATGAAAACGATTGGG
Found at i:3195684 original size:34 final size:34
Alignment explanation
Indices: 3195560--3195685 Score: 99
Period size: 34 Copynumber: 3.6 Consensus size: 34
3195550 CGAGTTAGAG
* * * * *
3195560 AATGAAAACGATCGAGATTAAATCACGAGTCAAAAA
1 AATGAAAACGACCGAGATT-AACCATGGGT-AAGAA
* * *
3195596 AATGAAAACAACCAAAATTAAACCATGGGTAAGAA
1 AATGAAAACGACCGAGATT-AACCATGGGTAAGAA
** * *
3195631 AATGAAAACGATTGGGATTAACCATGGGTTAGAA
1 AATGAAAACGACCGAGATTAACCATGGGTAAGAA
**
3195665 AATGAAAATTACCGAGATTAA
1 AATGAAAACGACCGAGATTAA
3195686 ATCATGAGTC
Statistics
Matches: 70, Mismatches: 20, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
34 30 0.43
35 17 0.24
36 23 0.33
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (34 bp):
AATGAAAACGACCGAGATTAACCATGGGTAAGAA
Found at i:3195791 original size:35 final size:35
Alignment explanation
Indices: 3195364--3195815 Score: 180
Period size: 35 Copynumber: 12.8 Consensus size: 35
3195354 AATTACCAAA
* * * *
3195364 ATTAAATTACGAGTTAGAAAATGAAAATGA-CTGAG
1 ATTAAATCATGAGTCAGAAAATGAAAACGATC-GAG
* * ** * *
3195399 ATGAAACCACCAGTTAGAAAATGAAAAATGATC-AGG
1 ATTAAATCATGAGTCAGAAAATG-AAAACGATCGA-G
* * * * * * *
3195435 ATTAAACCATGAGTTAGAAAACGAAGACAATGGGG
1 ATTAAATCATGAGTCAGAAAATGAAAACGATCGAG
* * * * * * * *
3195470 ATTAAAGCATTACTCAGAAAAATAAAAATGACCTAA
1 ATTAAATCATGAGTCAG-AAAATGAAAACGATCGAG
** * * *
3195506 ATTAAATCACAAGTCAGATAATAAAAACG-GCGAG
1 ATTAAATCATGAGTCAGAAAATGAAAACGATCGAG
* * * *
3195540 AATTAAACCACGAGTTAGAGAATGAAAACGATCGAG
1 -ATTAAATCATGAGTCAGAAAATGAAAACGATCGAG
* * * * * *
3195576 ATTAAATCACGAGTCAAAAAAATGAAAACAACCAAA
1 ATTAAATCATGAGTC-AGAAAATGAAAACGATCGAG
* * * * *
3195612 ATTAAACCATGGGTAAGAAAATGAAAACGATTGGG
1 ATTAAATCATGAGTCAGAAAATGAAAACGATCGAG
* * * ** *
3195647 ATT-AACCATGGGTTAGAAAATGAAAATTACCGAG
1 ATTAAATCATGAGTCAGAAAATGAAAACGATCGAG
*
3195681 ATTAAATCATGAGTC-GACAAATGAAAACGATTG-G
1 ATTAAATCATGAGTCAGA-AAATGAAAACGATCGAG
** * * * * *
3195715 TATTAAATCACAAGCCA-ATGAAATAAAAATGATTGAA
1 -ATTAAATCATGAGTCAGA--AAATGAAAACGATCGAG
* *
3195752 ATTAAATAATGAGTCAGAAAATGAAAATGATCGAG
1 ATTAAATCATGAGTCAGAAAATGAAAACGATCGAG
* ** *
3195787 ATTAAACCACAAATCAGAAAATGAAAACG
1 ATTAAATCATGAGTCAGAAAATGAAAACG
3195816 GTAATGAAAA
Statistics
Matches: 308, Mismatches: 94, Indels: 30
0.71 0.22 0.07
Matches are distributed among these distances:
34 33 0.11
35 171 0.56
36 102 0.33
37 2 0.01
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20
Consensus pattern (35 bp):
ATTAAATCATGAGTCAGAAAATGAAAACGATCGAG
Found at i:3195935 original size:35 final size:35
Alignment explanation
Indices: 3195818--3195934 Score: 137
Period size: 35 Copynumber: 3.3 Consensus size: 35
3195808 TGAAAACGGT
* * *
3195818 AATGAAAATTACCAAAATTAAATTACGAGTTAGAA
1 AATGAAAATGACCAGAATTAAAATACGAGTTAGAA
* * **
3195853 AATGAAAATGACCAGGATTAAAACACTTGTT-GAAA
1 AATGAAAATGACCAGAATTAAAATACGAGTTAG-AA
* *
3195888 AATGAAAATGACTAGAATTAAAGTACGAGTTAGAA
1 AATGAAAATGACCAGAATTAAAATACGAGTTAGAA
3195923 AATGAAAATGAC
1 AATGAAAATGAC
3195935 TGGGACTAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
34 1 0.01
35 65 0.97
36 1 0.01
ACGTcount: A:0.52, C:0.09, G:0.16, T:0.23
Consensus pattern (35 bp):
AATGAAAATGACCAGAATTAAAATACGAGTTAGAA
Found at i:3195960 original size:70 final size:70
Alignment explanation
Indices: 3195818--3195965 Score: 183
Period size: 70 Copynumber: 2.1 Consensus size: 70
3195808 TGAAAACGGT
* * * * *
3195818 AATGAAAATTACCAAAATTAAATTACGAGTTAGAAAATGAAAATGACCAGGATTAAAACACTTGT
1 AATGAAAATGACCAAAATTAAAGTACGAGTTAGAAAATGAAAATGACCAGGACTAAAACACCTGG
3195883 TGAAA
66 TGAAA
* * **
3195888 AATGAAAATGACTAGAATTAAAGTACGAGTTAGAAAATGAAAATGACTGGGACT-AAAC-CCTGA
1 AATGAAAATGACCAAAATTAAAGTACGAGTTAGAAAATGAAAATGACCAGGACTAAAACACCTG-
3195951 GTGAGAA
65 GTGA-AA
3195958 AATGAAAA
1 AATGAAAA
3195966 CCACAAGGAT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
68 3 0.04
69 7 0.10
70 57 0.85
ACGTcount: A:0.51, C:0.09, G:0.18, T:0.22
Consensus pattern (70 bp):
AATGAAAATGACCAAAATTAAAGTACGAGTTAGAAAATGAAAATGACCAGGACTAAAACACCTGG
TGAAA
Found at i:3196306 original size:35 final size:34
Alignment explanation
Indices: 3196267--3196613 Score: 180
Period size: 36 Copynumber: 9.8 Consensus size: 34
3196257 TTAGACGATT
** *
3196267 AGTCAAAAATTGAAAATGATCGGCATTAAATCATG
1 AGTCAAAAA-TGAAAATGATCGAAATTAAATCACG
* * *
3196302 AGTCAAAGAAATAAAAATGACCAAAATTAAATCACG
1 AGTC-AA-AAATGAAAATGATCGAAATTAAATCACG
* * * * *
3196338 AGTCAAAAAATGAAAAATGA-CTAGGATTGAACCACC
1 AGTC-AAAAATG-AAAATGATCGA-AATTAAATCACG
* * *
3196374 AGTCAAAAAATTAAAATGATAGAAATTAAATCACA
1 AGTC-AAAAATGAAAATGATCGAAATTAAATCACG
* * *
3196409 AGTCAGAAAATAAAAATGACCAAAATTAAATCACG
1 AGTCA-AAAATGAAAATGATCGAAATTAAATCACG
* * * *
3196444 AGTCTAAAATAAAAATGATCAAAATTAAATCATG
1 AGTCAAAAATGAAAATGATCGAAATTAAATCACG
* * *
3196478 AGTCTAAAATTAAGAATGA-CTAAGATT-AATCCACG
1 AGTCAAAAATGAA-AATGATCGAA-ATTAAAT-CACG
* * * * * *
3196513 AGTTAGAAAATTAAAACGA-CAGGAATTAAACCATG
1 AGTCA-AAAATGAAAATGATC-GAAATTAAATCACG
* * * * *
3196548 AGTTCAGAGAATGAAAATGACCGAGATTGAATCCACC
1 AG-TCA-AAAATGAAAATGATCGAAATTAAAT-CACG
* *
3196585 AGTCAGAAAATGAAAATGATTGAGATTAA
1 AGTCA-AAAATGAAAATGATCGAAATTAA
3196614 CCATGAGTTA
Statistics
Matches: 246, Mismatches: 51, Indels: 29
0.75 0.16 0.09
Matches are distributed among these distances:
34 46 0.19
35 84 0.34
36 108 0.44
37 8 0.03
ACGTcount: A:0.52, C:0.12, G:0.15, T:0.21
Consensus pattern (34 bp):
AGTCAAAAATGAAAATGATCGAAATTAAATCACG
Found at i:3196321 original size:36 final size:35
Alignment explanation
Indices: 3196267--3196496 Score: 214
Period size: 35 Copynumber: 6.5 Consensus size: 35
3196257 TTAGACGATT
* * *** *
3196267 AGTCAAAAATTGAAAATGATCGGCATTAAATCATG
1 AGTCAAAAAATAAAAATGATCAAAATTAAATCACG
*
3196302 AGTCAAAGAAATAAAAATGACCAAAATTAAATCACG
1 AGTCAAA-AAATAAAAATGATCAAAATTAAATCACG
** * * *
3196338 AGTCAAAAAATGAAAAATGA-CTAGGATTGAACCACC
1 AGTCAAAAAAT-AAAAATGATC-AAAATTAAATCACG
* *
3196374 AGTCAAAAAATTAAAATGAT-AGAAATTAAATCACA
1 AGTCAAAAAATAAAAATGATCA-AAATTAAATCACG
* *
3196409 AGTCAGAAAATAAAAATGACCAAAATTAAATCACG
1 AGTCAAAAAATAAAAATGATCAAAATTAAATCACG
* *
3196444 AGTC-TAAAATAAAAATGATCAAAATTAAATCATG
1 AGTCAAAAAATAAAAATGATCAAAATTAAATCACG
* * *
3196478 AGTCTAAAATTAAGAATGA
1 AGTCAAAAAATAAAAATGA
3196497 CTAAGATTAA
Statistics
Matches: 160, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
34 32 0.20
35 71 0.44
36 57 0.36
ACGTcount: A:0.54, C:0.12, G:0.13, T:0.21
Consensus pattern (35 bp):
AGTCAAAAAATAAAAATGATCAAAATTAAATCACG
Found at i:3196488 original size:19 final size:19
Alignment explanation
Indices: 3196430--3196490 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
3196420 AAAAATGACC
*
3196430 AAAATTAAATCACGAGTCT
1 AAAATTAAATCATGAGTCT
*
3196449 AAAA-TAAA-AATGA-TC-
1 AAAATTAAATCATGAGTCT
3196464 AAAATTAAATCATGAGTCT
1 AAAATTAAATCATGAGTCT
3196483 AAAATTAA
1 AAAATTAA
3196491 GAATGACTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
15 4 0.11
16 6 0.17
17 7 0.20
18 6 0.17
19 12 0.34
ACGTcount: A:0.56, C:0.10, G:0.08, T:0.26
Consensus pattern (19 bp):
AAAATTAAATCATGAGTCT
Found at i:3196496 original size:69 final size:69
Alignment explanation
Indices: 3196291--3196515 Score: 231
Period size: 69 Copynumber: 3.2 Consensus size: 69
3196281 AATGATCGGC
* * *
3196291 ATTAAATCATGAGTCAAAGAAATAAAAATGACCAAAATTAAATCACGAGTCAAAAAATGAAAAAT
1 ATTAAATCACGAGTCAAA-AAATAAAAATGATCAAAATTAAATCACGAGTC--AAAATTAAAAAT
*
3196356 GACTAGG
63 GACTAAG
* * * * * *
3196363 ATTGAACCACCAGTCAAAAAATTAAAATGAT-AGAAATTAAATCACAAGTCAGAAAATAAAAATG
1 ATTAAATCACGAGTCAAAAAATAAAAATGATCA-AAATTAAATCACGAGTCA-AAATTAAAAATG
* *
3196427 ACCAAA
64 ACTAAG
* * *
3196433 ATTAAATCACGAGTC-TAAAATAAAAATGATCAAAATTAAATCATGAGTCTAAAATTAAGAATGA
1 ATTAAATCACGAGTCAAAAAATAAAAATGATCAAAATTAAATCACGAGTC-AAAATTAAAAATGA
3196497 CTAAG
65 CTAAG
3196502 ATT-AATCCACGAGT
1 ATTAAAT-CACGAGT
3196516 TAGAAAATTA
Statistics
Matches: 125, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
68 3 0.02
69 53 0.42
70 28 0.22
71 27 0.22
72 14 0.11
ACGTcount: A:0.54, C:0.12, G:0.12, T:0.22
Consensus pattern (69 bp):
ATTAAATCACGAGTCAAAAAATAAAAATGATCAAAATTAAATCACGAGTCAAAATTAAAAATGAC
TAAG
Found at i:3196555 original size:140 final size:142
Alignment explanation
Indices: 3196291--3196569 Score: 341
Period size: 139 Copynumber: 2.0 Consensus size: 142
3196281 AATGATCGGC
*
3196291 ATTAAATCATGAGTCAAAGAAATAAAAATGACCAAAATTAAATCACGAGTCAAAAAATGAAAAAT
1 ATTAAATCACGAGTCAAAGAAATAAAAATGACCAAAATTAAATCACGAGTCAAAAAATGAAAAAT
* * * *
3196356 GACTAGGATTGAACCACCAGTCAAAAAATTAAAATGATAGAAATTAAATCACAAGTCAGAAAATA
66 GACTAAGATTGAACCACCAGTCAAAAAATTAAAACGACAGAAATTAAACCACAAGTCAGAAAATA
3196421 AAAATGACCAAA
131 AAAATGACCAAA
* * * * * *
3196433 ATTAAATCACGAGTC-TA-AAATAAAAATGATCAAAATTAAATCATGAGTC-TAAAATTAAGAAT
1 ATTAAATCACGAGTCAAAGAAATAAAAATGACCAAAATTAAATCACGAGTCAAAAAATGAAAAAT
* * * * ** *
3196495 GACTAAGATT-AATCCACGAGTTAGAAAATTAAAACGACAGGAATTAAACCATGAGTTCAGAGAA
66 GACTAAGATTGAA-CCACCAGTCAAAAAATTAAAACGACAGAAATTAAACCACAAG-TCAGAAAA
*
3196559 TGAAAATGACC
129 TAAAAATGACC
3196570 GAGATTGAAT
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
138 2 0.02
139 52 0.45
140 47 0.41
141 1 0.01
142 14 0.12
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.21
Consensus pattern (142 bp):
ATTAAATCACGAGTCAAAGAAATAAAAATGACCAAAATTAAATCACGAGTCAAAAAATGAAAAAT
GACTAAGATTGAACCACCAGTCAAAAAATTAAAACGACAGAAATTAAACCACAAGTCAGAAAATA
AAAATGACCAAA
Found at i:3196598 original size:36 final size:35
Alignment explanation
Indices: 3196291--3196603 Score: 222
Period size: 35 Copynumber: 8.9 Consensus size: 35
3196281 AATGATCGGC
* *
3196291 ATTAAATCATGAGTCAAAGAAATAAAAATGACCAAA
1 ATTAAATCACGAGTCAGA-AAATAAAAATGACCAAA
* * **
3196327 ATTAAATCACGAGTCAAAAAATGAAAAATGACTAGG
1 ATTAAATCACGAGTCAGAAAAT-AAAAATGACCAAA
* * * * * *
3196363 ATTGAACCACCAGTCAAAAAATTAAAATGA-TAGAA
1 ATTAAATCACGAGTCAGAAAATAAAAATGACCA-AA
*
3196398 ATTAAATCACAAGTCAGAAAATAAAAATGACCAAA
1 ATTAAATCACGAGTCAGAAAATAAAAATGACCAAA
* *
3196433 ATTAAATCACGAGTC-TAAAATAAAAATGATCAAA
1 ATTAAATCACGAGTCAGAAAATAAAAATGACCAAA
* * * * *
3196467 ATTAAATCATGAGTCTA-AAATTAAGAATGACTAAG
1 ATTAAATCACGAGTC-AGAAAATAAAAATGACCAAA
* * * *
3196502 ATT-AATCCACGAGTTAGAAAATTAAAACGA-CAGGA
1 ATTAAAT-CACGAGTCAGAAAATAAAAATGACCA-AA
* * * * * *
3196537 ATTAAACCATGAGTTCAGAGAATGAAAATGACCGAG
1 ATTAAATCACGAG-TCAGAAAATAAAAATGACCAAA
* * *
3196573 ATTGAATCCACCAGTCAGAAAATGAAAATGA
1 ATTAAAT-CACGAGTCAGAAAATAAAAATGA
3196604 TTGAGATTAA
Statistics
Matches: 217, Mismatches: 48, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
34 38 0.18
35 91 0.42
36 83 0.38
37 5 0.02
ACGTcount: A:0.52, C:0.13, G:0.14, T:0.21
Consensus pattern (35 bp):
ATTAAATCACGAGTCAGAAAATAAAAATGACCAAA
Found at i:3196645 original size:32 final size:32
Alignment explanation
Indices: 3196608--3196669 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
3196598 AAATGATTGA
*
3196608 GATT-AACCATGAGTTAAAAAAAGAAAAATGGG
1 GATTAAACCATAAGTTAAAAAAA-AAAAATGGG
* *
3196640 GATTAAACCATAAGTTAGAGAAAAAAAATG
1 GATTAAACCATAAGTTAAAAAAAAAAAATG
3196670 ACCAGAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 11 0.42
33 15 0.58
ACGTcount: A:0.55, C:0.06, G:0.19, T:0.19
Consensus pattern (32 bp):
GATTAAACCATAAGTTAAAAAAAAAAAATGGG
Found at i:3196715 original size:36 final size:35
Alignment explanation
Indices: 3195844--3196717 Score: 186
Period size: 35 Copynumber: 24.9 Consensus size: 35
3195834 ATTAAATTAC
* *
3195844 GAGTTAGAAAATGAAAATGACCAGG-ATTAAAACACT
1 GAGTTAGAAAATGAAAATGATC-GGAATTAAACCA-T
* * ** *
3195880 -TGTT-GAAAAATGAAAATGA-CTAGAATTAAAGTAC
1 GAGTTAG-AAAATGAAAATGATC-GGAATTAAACCAT
* * *
3195914 GAGTTAGAAAATGAAAATGA-CTGGGACTAAACCCT
1 GAGTTAGAAAATGAAAATGATC-GGAATTAAACCAT
* ** *
3195949 GAGTGAGAAAATGAAAACCA-CAAGG-ATTAAGCCAT
1 GAGTTAGAAAATGAAAATGATC--GGAATTAAACCAT
* ** * * **
3195984 GAGTCAGAAAATGAAAGCGGTC-AAGATTAAATAAT
1 GAGTTAGAAAATGAAAATGATCGGA-ATTAAACCAT
* * * * *
3196019 GAGTCAGAAAATAAAAAATGATCAGAATTACACCAC
1 GAGTTAGAAAAT-GAAAATGATCGGAATTAAACCAT
* * * * * *
3196055 GAGTCAAAAAATGAAAACGACTAGG-ATTAAATCAA
1 GAGTTAGAAAATGAAAATGA-TCGGAATTAAACCAT
* * * * * * *
3196090 GAGTTA-AAAGTAAAAATGATAGGGATAAAAACAA
1 GAGTTAGAAAATGAAAATGATCGGAATTAAACCAT
* * * *
3196124 CATGTTGGAAAATGAAAACT-A-CAGGGATTAAAGCAT
1 GA-GTTAGAAAATGAAAA-TGATC-GGAATTAAACCAT
* * * *
3196160 GAGTCAGAAAATGTAAAA-CAACGAGGATTAAACCA-
1 GAGTTAGAAAATG-AAAATGATCG-GAATTAAACCAT
* * * *
3196195 GAAGTCAAAAAAAGAAAATGAT-AGAGATTAAACCAT
1 G-AGTTAGAAAATGAAAATGATCGGA-ATTAAACCAT
* * * * * *
3196231 GACTCAGCAAATGAAAATGACCGGAATTAGACGAT
1 GAGTTAGAAAATGAAAATGATCGGAATTAAACCAT
* * * *
3196266 TAGTCA-AAAATTGAAAATGATCGGCATTAAATCAT
1 GAGTTAGAAAA-TGAAAATGATCGGAATTAAACCAT
* * * * ** * *
3196301 GAGTCAAAGAAATAAAAATGACCAAAATTAAATCAC
1 GAGTTAGA-AAATGAAAATGATCGGAATTAAACCAT
* * * * *
3196337 GAGTCAAAAAATGAAAAATGACTAGG-ATTGAACCAC
1 GAGTTAGAAAATG-AAAATGA-TCGGAATTAAACCAT
* * * * * * * *
3196373 CAGTCAAAAAATTAAAATGATAGAAATTAAATCAC
1 GAGTTAGAAAATGAAAATGATCGGAATTAAACCAT
* * * * ** * *
3196408 AAGTCAGAAAATAAAAATGACCAAAATTAAATCAC
1 GAGTTAGAAAATGAAAATGATCGGAATTAAACCAT
* ** *
3196443 GAGTCT--AAAATAAAAATGATCAAAATTAAATCAT
1 GAGT-TAGAAAATGAAAATGATCGGAATTAAACCAT
* ** * *
3196477 GAGTCT--AAAATTAAGAATGA-CTAAGATTAATCCAC
1 GAGT-TAGAAAATGAA-AATGATCGGA-ATTAAACCAT
* *
3196512 GAGTTAGAAAATTAAAACGA-CAGGAATTAAACCAT
1 GAGTTAGAAAATGAAAATGATC-GGAATTAAACCAT
* * * *
3196547 GAGTTCAGAGAATGAAAATGA-CCGAGATTGAATCCAC
1 GAGTT-AGAAAATGAAAATGATCGGA-ATT-AAACCAT
* * *
3196584 CAGTCAGAAAATGAAAATGAT-TGAGATT-AACCAT
1 GAGTTAGAAAATGAAAATGATCGGA-ATTAAACCAT
* * * *
3196618 GAGTTAAAAAAAGAAAA--ATGGGGATTAAACCAT
1 GAGTTAGAAAATGAAAATGATCGGAATTAAACCAT
* * * * *
3196651 AAGTTAGAGAAA-AAAAATGACCAGAATTAAATCAT
1 GAGTTAGA-AAATGAAAATGATCGGAATTAAACCAT
* *
3196686 GAGTTCAGAAAATGAAAACGATGGGAATTAAA
1 GAGTT-AGAAAATGAAAATGATCGGAATTAAA
3196718 GTAGAGATCG
Statistics
Matches: 633, Mismatches: 157, Indels: 96
0.71 0.18 0.11
Matches are distributed among these distances:
32 5 0.01
33 21 0.03
34 92 0.15
35 309 0.49
36 193 0.30
37 13 0.02
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (35 bp):
GAGTTAGAAAATGAAAATGATCGGAATTAAACCAT
Found at i:3196894 original size:70 final size:69
Alignment explanation
Indices: 3196820--3197058 Score: 172
Period size: 71 Copynumber: 3.4 Consensus size: 69
3196810 AAATGACCTG
* *
3196820 GATTAATCAC-GAGTCAG-AAATGAAAACACATTAGGATTAAACTAC-AGGTCAAAAAAATGAAA
1 GATTAATCACGGAGTCAGAAAATGAAAACA-ATCAAGATTAAACTACGA-GTC-AAAAAATGAAA
3196882 ACGATCGA
63 ACGATC-A
* * * *
3196890 GATTAAAC-CGTGGGTTAGAAAATGAAAACAATCAAGATTAAATTACGAGTCAAAAAATGAAAAC
1 GATTAATCACG-GAGTCAGAAAATGAAAACAATCAAGATTAAACTACGAGTCAAAAAATGAAAAC
3196954 GATCA
65 GATCA
* * ** *
3196959 GTATTACATCAC-AAG-CGAGAGAAATAAAAATGATCGAA-ATTCAA-TCACGAGTCAAAAAATG
1 G-ATTA-ATCACGGAGTC-AGA-AAATGAAAACAATC-AAGATTAAACT-ACGAGTCAAAAAATG
*
3197020 AAAATGATCA
60 AAAACGATCA
* *
3197030 GGATTAAAC-CGTGAGTCAGAAAAAGAAAA
1 -GATTAATCACG-GAGTCAGAAAATGAAAA
3197059 TGATAATAAA
Statistics
Matches: 135, Mismatches: 19, Indels: 30
0.73 0.10 0.16
Matches are distributed among these distances:
69 4 0.03
70 42 0.31
71 72 0.53
72 17 0.13
ACGTcount: A:0.51, C:0.13, G:0.18, T:0.19
Consensus pattern (69 bp):
GATTAATCACGGAGTCAGAAAATGAAAACAATCAAGATTAAACTACGAGTCAAAAAATGAAAACG
ATCA
Found at i:3196947 original size:35 final size:35
Alignment explanation
Indices: 3196827--3197058 Score: 98
Period size: 35 Copynumber: 6.6 Consensus size: 35
3196817 CTGGATTAAT
* * *
3196827 CACGAGTC-AGAAATGAAAACACATTAGGATTAAAC
1 CACGAGTCAAAAAATGAAAACA-ATCAAGATTAAAC
* * *
3196862 TAC-AGGTCAAAAAAATGAAAACGATCGAGATTAAAC
1 CACGA-GTC-AAAAAATGAAAACAATCAAGATTAAAC
** * * * *
3196898 CGTGGGTTAGAAAATGAAAACAATCAAGATTAAAT
1 CACGAGTCAAAAAATGAAAACAATCAAGATTAAAC
* * * *
3196933 TACGAGTCAAAAAATGAAAACGATC-AGTATTACAT
1 CACGAGTCAAAAAATGAAAACAATCAAG-ATTAAAC
* * * ** * *
3196968 CACAAG-CGAGAGAAATAAAAATGATCGAA-ATTCAAT
1 CACGAGTC-A-AAAAATGAAAACAATC-AAGATTAAAC
** *
3197004 CACGAGTCAAAAAATGAAAATGATCAGGATTAAAC
1 CACGAGTCAAAAAATGAAAACAATCAAGATTAAAC
**
3197039 CGTGAGTCAGAAAAA-GAAAA
1 CACGAGTCA-AAAAATGAAAA
3197059 TGATAATAAA
Statistics
Matches: 147, Mismatches: 38, Indels: 24
0.70 0.18 0.11
Matches are distributed among these distances:
34 5 0.03
35 88 0.60
36 41 0.28
37 12 0.08
38 1 0.01
ACGTcount: A:0.51, C:0.13, G:0.18, T:0.18
Consensus pattern (35 bp):
CACGAGTCAAAAAATGAAAACAATCAAGATTAAAC
Found at i:3197278 original size:36 final size:35
Alignment explanation
Indices: 3197222--3197337 Score: 99
Period size: 36 Copynumber: 3.3 Consensus size: 35
3197212 CACTAGTAAG
** * *
3197222 AAAATGAAAGCGATCGAGATTAAATGACGAGTTAA
1 AAAATGAAAATGATCAAGATTAAATGACGAGTCAA
* * **
3197257 GAAATGAAAAATGATCAAGATTATACCACGAGTCAA
1 AAAATG-AAAATGATCAAGATTAAATGACGAGTCAA
* **
3197293 AAAATGAAAATGAT-AGGAATTAAATGATAAGTCAA
1 AAAATGAAAATGATCAAG-ATTAAATGACGAGTCAA
3197328 AAAATAGAAA
1 AAAAT-GAAA
3197338 TGACAGGGAC
Statistics
Matches: 63, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
34 2 0.03
35 30 0.48
36 31 0.49
ACGTcount: A:0.54, C:0.08, G:0.18, T:0.20
Consensus pattern (35 bp):
AAAATGAAAATGATCAAGATTAAATGACGAGTCAA
Found at i:3197326 original size:35 final size:36
Alignment explanation
Indices: 3197287--3197386 Score: 107
Period size: 35 Copynumber: 2.8 Consensus size: 36
3197277 TTATACCACG
* **
3197287 AGTCAAAAAATGAAAATGATAGGAATTAAATGAT-A
1 AGTCAAAAAATGAAAATGATAGGGATTAAACAATGA
* * *
3197322 AGTCAAAAAAT-AGAAATGACAGGGACTAAACAATGC
1 AGTCAAAAAATGA-AAATGATAGGGATTAAACAATGA
*
3197358 A-TCAAAAAATGAAAACGATAGGGATTAAA
1 AGTCAAAAAATGAAAATGATAGGGATTAAA
3197387 GCACGAGGCA
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
34 1 0.02
35 50 0.94
36 2 0.04
ACGTcount: A:0.56, C:0.08, G:0.18, T:0.18
Consensus pattern (36 bp):
AGTCAAAAAATGAAAATGATAGGGATTAAACAATGA
Found at i:3197552 original size:36 final size:36
Alignment explanation
Indices: 3197510--3197636 Score: 141
Period size: 35 Copynumber: 3.6 Consensus size: 36
3197500 TCAAAAAATG
* *
3197510 AAAATGACCGACATTAAATCACGAGTTAAAGAAACA
1 AAAATGACCAAAATTAAATCACGAGTTAAAGAAACA
** * * *
3197546 AAAATGACCAGGATTAAACCACTAG-TCAAGAAACA
1 AAAATGACCAAAATTAAATCACGAGTTAAAGAAACA
* * * *
3197581 AAAATGACTAAAATAAAATCACGAGTTAGA-AAATA
1 AAAATGACCAAAATTAAATCACGAGTTAAAGAAACA
3197616 AAAATGACCAAAATTAAATCA
1 AAAATGACCAAAATTAAATCA
3197637 TGAGCCTAAT
Statistics
Matches: 73, Mismatches: 17, Indels: 3
0.78 0.18 0.03
Matches are distributed among these distances:
35 51 0.70
36 22 0.30
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.17
Consensus pattern (36 bp):
AAAATGACCAAAATTAAATCACGAGTTAAAGAAACA
Found at i:3197607 original size:141 final size:140
Alignment explanation
Indices: 3197462--3197793 Score: 321
Period size: 141 Copynumber: 2.4 Consensus size: 140
3197452 ATTAAACCTT
* *
3197462 GAGTTTGAAAATGAAAACGACTGGAATTAAATGATGAGTCAAAAAATGAAAATGACC-GACATTA
1 GAGTTAGAAAATGAAAATGACTGGAATTAAATGATGAGTCAAAAAATGAAAATGACCAG-CATTA
* * * *
3197526 AATCACGAGTTAAAGAAACAAAAATGACCAGGATTAAACCACT-AGTCA-AGAAACAAAAATGAC
65 AACCACGAGTCAAA-AAACAAAAACGACCAGGATTAAACCA-TAAGACAGAG-AACAAAAATGAC
*
3197589 TAAAATAAAATCAC
127 TAAAATAAAAGCAC
* *** * * * *** *
3197603 GAGTTAGAAAATAAAAATGACCAAAATTAAATCATGAGCCTAATTTTGAAAATGACCAGGATTAA
1 GAGTTAGAAAATGAAAATGACTGGAATTAAATGATGAGTCAAAAAATGAAAATGACCAGCATTAA
* ** * * ** *
3197668 ACCACGAGTCAGAAAATTAAAACGACGAGGTTTAAACCATAAGACAGAGAATGAAAATGACTAAG
66 ACCACGAGTCAAAAAACAAAAACGACCAGGATTAAACCATAAGACAGAGAACAAAAATGACTAAA
*
3197733 ATAAAAGCAT
131 ATAAAAGCAC
* *
3197743 GAGTTAGAAAATGAAAAATGA-TCGGGATTAAATGATGAGTCAGAAAATGAA
1 GAGTTAGAAAATG-AAAATGACT-GGAATTAAATGATGAGTCAAAAAATGAA
3197794 GACAATAGGG
Statistics
Matches: 147, Mismatches: 39, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
139 1 0.01
140 58 0.39
141 87 0.59
142 1 0.01
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.20
Consensus pattern (140 bp):
GAGTTAGAAAATGAAAATGACTGGAATTAAATGATGAGTCAAAAAATGAAAATGACCAGCATTAA
ACCACGAGTCAAAAAACAAAAACGACCAGGATTAAACCATAAGACAGAGAACAAAAATGACTAAA
ATAAAAGCAC
Found at i:3197809 original size:106 final size:105
Alignment explanation
Indices: 3197649--3197892 Score: 255
Period size: 106 Copynumber: 2.3 Consensus size: 105
3197639 AGCCTAATTT
* * * * * * * * *
3197649 TGAAAATGACCAGGATTAAACCACGAGTCAGAAAATTAAAACGA-CGAGGTTTAAACCAT-A-AG
1 TGAAAACGATCAGGATTAAATCATGAGTCAGAAAATGAAGACAATAG-GGATTAAACCATGAGAG
* *
3197711 ACAGAGAATGAA-AATGACTAAGAT-AAAAGCATGAGTTAGAAAA
65 A-AGA-AAT-AATAATGACCAAAATCAAAA-CATGAGTTAGAAAA
* * * *
3197754 TGAAAAATGATCGGGATTAAATGATGAGTCAGAAAATGAAGACAATAGGGATTAAACCATGAGTT
1 TG-AAAACGATCAGGATTAAATCATGAGTCAGAAAATGAAGACAATAGGGATTAAACCATGAG-A
3197819 GAAGAAATAATAATGACCAAAATCAAAACATGAGTTAGAAAA
64 GAAGAAATAATAATGACCAAAATCAAAACATGAGTTAGAAAA
3197861 TGAAAACGATCAGGATTAAATCATGAGTCAGA
1 TGAAAACGATCAGGATTAAATCATGAGTCAGA
3197893 GAATAAAAAC
Statistics
Matches: 116, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
105 2 0.02
106 74 0.64
107 31 0.27
108 7 0.06
109 2 0.02
ACGTcount: A:0.50, C:0.11, G:0.20, T:0.19
Consensus pattern (105 bp):
TGAAAACGATCAGGATTAAATCATGAGTCAGAAAATGAAGACAATAGGGATTAAACCATGAGAGA
AGAAATAATAATGACCAAAATCAAAACATGAGTTAGAAAA
Found at i:3198092 original size:176 final size:175
Alignment explanation
Indices: 3197741--3198150 Score: 386
Period size: 176 Copynumber: 2.3 Consensus size: 175
3197731 AGATAAAAGC
* * * * *
3197741 ATGAGTTAGAAAATGAAAAATGATCGGGATTAAATGATGAGTCAGAAAATGAAGACAATAGGGAT
1 ATGAGTTAGAAAA-CAAAAAT-ATC-GGATTAAATCATGAGTCAAAAAATGAAAACAACAGGGAT
*
3197806 TAAACCATGAGTTGAAGAAATAATAATGACCAAAATCAAAACATGAGTTAGAAAATGAAAACGAT
63 TAAACCATGAGTTGAAGAAATAATAACGACCAAAATCAAAACATGAGTTAGAAAATGAAAACGAT
** ** **
3197871 CAGGATTAAATCATGAGTCAGAGAATAAAAACAACTGGCATTAAAT-A
128 CAACATTAAATCACAAGTCAGAGAATAAAAACAACTGAAATTAAATCA
3197918 ATGAGTTAGAAAACAAAAACTATCAGGATTAAATCATGAGTCAAAAAATGAAAACAACCA-GGAT
1 ATGAGTTAGAAAACAAAAA-TATC-GGATTAAATCATGAGTCAAAAAATGAAAACAA-CAGGGAT
* ** * * * * *
3197982 TAAACCATGGGTT--AGAAAATGAA-AACGACTGAGATTAAATCATGTGTTAGAAAATGAAAATG
63 TAAACCATGAGTTGAAG-AAAT-AATAACGACCAAAATCAAAACATGAGTTAGAAAATGAAAACG
* ** *
3198044 GTCAACATTAAATCACAAG-CTAGAGAAATAAAAATGATTGAAATTAAATCA
126 ATCAACATTAAATCACAAGTC-AGAG-AATAAAAACAACTGAAATTAAATCA
* * ** *
3198095 A-GAGTCAGAAAATGAAAAGGATCGAGATTAAACCATGAGTTC-AAAAATGAAAACAA
1 ATGAGTTAGAAAA-CAAAAATATCG-GATTAAATCATGAG-TCAAAAAATGAAAACAA
3198151 TAATGAAAAT
Statistics
Matches: 193, Mismatches: 30, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
174 3 0.02
175 54 0.28
176 113 0.59
177 23 0.12
ACGTcount: A:0.51, C:0.10, G:0.18, T:0.21
Consensus pattern (175 bp):
ATGAGTTAGAAAACAAAAATATCGGATTAAATCATGAGTCAAAAAATGAAAACAACAGGGATTAA
ACCATGAGTTGAAGAAATAATAACGACCAAAATCAAAACATGAGTTAGAAAATGAAAACGATCAA
CATTAAATCACAAGTCAGAGAATAAAAACAACTGAAATTAAATCA
Found at i:3198125 original size:35 final size:35
Alignment explanation
Indices: 3197662--3198148 Score: 233
Period size: 35 Copynumber: 13.8 Consensus size: 35
3197652 AAATGACCAG
* * *
3197662 GATTAAACCACGAGTCAGAAAATTAAAACGA-CGA
1 GATTAAATCATGAGTCAGAAAATGAAAACGATCGA
* * * * * * *
3197696 GGTTTAAACCATAAGACAGAGAATGAAAATGA-CTAA
1 -GATTAAATCATGAGTCAGAAAATGAAAACGATC-GA
* * * * *
3197732 GATAAAAGCATGAGTTAGAAAATGAAAAATGATCGG
1 GATTAAATCATGAGTCAGAAAATG-AAAACGATCGA
* * * * *
3197768 GATTAAATGATGAGTCAGAAAATGAAGACAATAGG
1 GATTAAATCATGAGTCAGAAAATGAAAACGATCGA
* * * * *
3197803 GATTAAACCATGAGT-TGAAGAAAT-AATAATGACCAA
1 GATTAAATCATGAGTCAG-A-AAATGAA-AACGATCGA
* * * *
3197839 AATCAAAACATGAGTTAGAAAATGAAAACGATC-A
1 GATTAAATCATGAGTCAGAAAATGAAAACGATCGA
* * *
3197873 GGATTAAATCATGAGTCAGAGAATAAAAAC-AACTG-
1 -GATTAAATCATGAGTCAGAAAATGAAAACGATC-GA
* * ** *
3197908 GCATTAAATAATGAGTTAGAAAACAAAAACTATC-A
1 G-ATTAAATCATGAGTCAGAAAATGAAAACGATCGA
* * *
3197943 GGATTAAATCATGAGTCAAAAAATGAAAAC-AACCA
1 -GATTAAATCATGAGTCAGAAAATGAAAACGATCGA
* * *
3197978 GGATTAAACCATGGGTTAGAAAATGAAAACGA-CTGA
1 -GATTAAATCATGAGTCAGAAAATGAAAACGATC-GA
* * * * *
3198014 GATTAAATCATGTGTTAGAAAATGAAAATGGTCAA
1 GATTAAATCATGAGTCAGAAAATGAAAACGATCGA
* ** * * *
3198049 CATTAAATCACAAG-CTAGAGAAATAAAAATGATTGA
1 GATTAAATCATGAGTC-AGA-AAATGAAAACGATCGA
* * *
3198085 AATTAAATCAAGAGTCAGAAAATGAAAAGGATCGA
1 GATTAAATCATGAGTCAGAAAATGAAAACGATCGA
*
3198120 GATTAAACCATGAGTTCA-AAAATGAAAAC
1 GATTAAATCATGAG-TCAGAAAATGAAAAC
3198149 AATAATGAAA
Statistics
Matches: 341, Mismatches: 88, Indels: 46
0.72 0.19 0.10
Matches are distributed among these distances:
34 7 0.02
35 247 0.72
36 84 0.25
37 3 0.01
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (35 bp):
GATTAAATCATGAGTCAGAAAATGAAAACGATCGA
Found at i:3198314 original size:35 final size:35
Alignment explanation
Indices: 3198248--3198333 Score: 109
Period size: 35 Copynumber: 2.5 Consensus size: 35
3198238 ATTAAAGCCC
* *
3198248 AAGTCAAAAAATGAAAACGACTAGGACTAAACCCT
1 AAGTCAAAAAATGAAAACCACTAGGACTAAACCAT
* * * **
3198283 TAGTGAGAAAATGAAAACCACTAGGGTTAAACCAT
1 AAGTCAAAAAATGAAAACCACTAGGACTAAACCAT
3198318 AAGTCAAAAAATGAAA
1 AAGTCAAAAAATGAAA
3198334 GCAATCGAGA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.52, C:0.15, G:0.16, T:0.16
Consensus pattern (35 bp):
AAGTCAAAAAATGAAAACCACTAGGACTAAACCAT
Found at i:3198382 original size:36 final size:35
Alignment explanation
Indices: 3198342--3198454 Score: 113
Period size: 35 Copynumber: 3.2 Consensus size: 35
3198332 AAGCAATCGA
* * **
3198342 GATTAAATGACAAGTTAAAAAATGAAAAATGACCTG
1 GATTAAATCACAAGTCAAAAAAT-AAAAATGACAGG
* *
3198378 GATTAAATCTCAAGTCAAAAACTAAAAATGACAGG
1 GATTAAATCACAAGTCAAAAAATAAAAATGACAGG
* *
3198413 GATTAAA-CA-ATGGGTCAAAAAATAAAAACGACAGG
1 GATTAAATCACA--AGTCAAAAAATAAAAATGACAGG
3198448 GATTAAA
1 GATTAAA
3198455 GCATGAGTCA
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
33 1 0.02
34 1 0.02
35 44 0.68
36 19 0.29
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (35 bp):
GATTAAATCACAAGTCAAAAAATAAAAATGACAGG
Found at i:3198384 original size:176 final size:174
Alignment explanation
Indices: 3198179--3198615 Score: 397
Period size: 176 Copynumber: 2.5 Consensus size: 174
3198169 TTGAATTACG
* * * *
3198179 AGTTAGAAAATGAAAATGACCAGGATTAAAAT-GCGAGTAAAAAAATAAAAATGACCGGTATTAA
1 AGTTAAAAAATGAAAATGACCAGGATT-AAATCGCAAGTAAAAAAATAAAAATGACAGGGATTAA
* * * * *
3198243 AGCCCAA-GTCAAAAAATGAAAACGACTA-GGACTAAACCCTTAGTGAGAAAATG-AAAACCACT
65 A---CAAGGTCAAAAAATAAAAACGAC-AGGGACTAAACCATGAGTCAGAAAATGTAAAA-CAAT
*
3198305 -AGGGTTAAACCATAAGTCAAAAAATGAAAGCAATCGAGATTAAATGACA
125 GAGGGTTAAACCATAAGTCAAAAAATGAAAACAATCGAGATTAAATGACA
* * * *
3198354 AGTTAAAAAATGAAAAATGACCTGGATTAAATCTCAAGTCAAAAACTAAAAATGACAGGGATTAA
1 AGTTAAAAAATG-AAAATGACCAGGATTAAATCGCAAGTAAAAAAATAAAAATGACAGGGATTAA
* * *
3198419 ACAATGGGTCAAAAAATAAAAACGACAGGGATTAAAGCATGAGTCAGAAAATGTAAAACAATGGG
65 ACAA--GGTCAAAAAATAAAAACGACAGGGACTAAACCATGAGTCAGAAAATGTAAAACAAT-GA
* * * ** **
3198484 GGGTTAAACCATAAGTCAAAGAGTGAAAATAATCGAGATTAAACCATG
127 GGGTTAAACCATAAGTCAAAAAATGAAAACAATCGAGATTAAATGACA
* * * ** * *
3198532 AGTCAAAAAAAGAAAATGATCAAAATTAAA-CG--AGTAAAAAAATTAAAATGATC-GGCATTAA
1 AGTTAAAAAATGAAAATGACCAGGATTAAATCGCAAGTAAAAAAATAAAAATGA-CAGGGATTAA
*
3198593 ATAACGAGTCAAAGAAATAAAAA
65 ACAA-G-GTCAAA-AAATAAAAA
3198616 TGACTAAAAT
Statistics
Matches: 213, Mismatches: 37, Indels: 24
0.78 0.14 0.09
Matches are distributed among these distances:
173 4 0.02
174 32 0.15
175 26 0.12
176 83 0.39
177 18 0.08
178 50 0.23
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.18
Consensus pattern (174 bp):
AGTTAAAAAATGAAAATGACCAGGATTAAATCGCAAGTAAAAAAATAAAAATGACAGGGATTAAA
CAAGGTCAAAAAATAAAAACGACAGGGACTAAACCATGAGTCAGAAAATGTAAAACAATGAGGGT
TAAACCATAAGTCAAAAAATGAAAACAATCGAGATTAAATGACA
Found at i:3199053 original size:34 final size:35
Alignment explanation
Indices: 3198391--3199191 Score: 182
Period size: 35 Copynumber: 22.9 Consensus size: 35
3198381 TAAATCTCAA
* * * *
3198391 GTCAAAAACTAAAAATGA-CAGGGATTAAACAATGG
1 GTCAAAAAATGAAAATGATC-GAGATTAAACCATGG
* * * * *
3198426 GTCAAAAAATAAAAACGA-CAGGGATTAAAGCATGA
1 GTCAAAAAATGAAAATGATC-GAGATTAAACCATGG
* ** * * * **
3198461 GTCAGAAAATGTAAAACAATGGGGGGTTAAACCATAA
1 GTCAAAAAATG-AAAATGAT-CGAGATTAAACCATGG
* * * *
3198498 GTCAAAGAGTGAAAATAATCGAGATTAAACCATGA
1 GTCAAAAAATGAAAATGATCGAGATTAAACCATGG
* * * *
3198533 GTCAAAAAAAGAAAATGATCAAAATTAAA-C--GA
1 GTCAAAAAATGAAAATGATCGAGATTAAACCATGG
* * ** * *
3198565 GTAAAAAAATTAAAATGATCG-GCATTAAATAACGA
1 GTCAAAAAATGAAAATGATCGAG-ATTAAACCATGG
* * * * * * *
3198600 GTCAAAGAAATAAAAATGA-CTAAAATCAAATCACGA
1 GTCAAA-AAATGAAAATGATC-GAGATTAAACCATGG
* * * *
3198636 GTCGAAAAATGAAAAAGATCGAGATTAGACCACT-A
1 GTCAAAAAATGAAAATGATCGAGATTAAACCA-TGG
** * * * * *
3198671 GTCAAAAAATGAAAACAACCG-GAACTAAATCACGA
1 GTCAAAAAATGAAAATGATCGAG-ATTAAACCATGG
* ** * * * *
3198706 GTCAGAAAAT-AAAATTGGCCAAAATTAAATCATGA
1 GTCAAAAAATGAAAA-TGATCGAGATTAAACCATGG
* * * * *
3198741 GTC-TAAAATCGAAAATGATCAAGATTCAACCAAGA
1 GTCAAAAAAT-GAAAATGATCGAGATTAAACCATGG
* * * ** * * *
3198776 GTTAGAAAATTAAAACCA-CAAGGATTAAACCACGA
1 GTCAAAAAATGAAAATGATCGA-GATTAAACCATGG
* * * * ***
3198811 GTTAGAGAATGAAAATGA-CTGAGATGAAACCACCA
1 GTCAAAAAATGAAAATGATC-GAGATTAAACCATGG
* * * * *
3198846 ATCAGAAAACGAAAAATGATC-AGGATTAAACCACGA
1 GTCAAAAAATG-AAAATGATCGA-GATTAAACCATGG
* * * ***
3198882 GTCAAAAAATTAAAAATGATCGAAATTAAATCACAA
1 GTCAAAAAA-TGAAAATGATCGAGATTAAACCATGG
* * * * * *
3198918 GTCAGAAAATAAAAAAGGT-GGGAATTAAACCATGA
1 GTCAAAAAATGAAAATGATCGAG-ATTAAACCATGG
* ** * * * *
3198953 GTCAGAAAACAAAAACGGTCGAGATTAAATCATGA
1 GTCAAAAAATGAAAATGATCGAGATTAAACCATGG
* * *
3198988 GTCAAAAAATGAAAA-CAACTGAAATTAAACCATGG
1 GTCAAAAAATGAAAATGATC-GAGATTAAACCATGG
*
3199023 GTCAAAAAATGAAAATGATCGGGATT-AACCATGG
1 GTCAAAAAATGAAAATGATCGAGATTAAACCATGG
* * * *
3199057 GTTAGAAAATGAAAATGATCGAGATTAAATCATGA
1 GTCAAAAAATGAAAATGATCGAGATTAAACCATGG
* * * * ***
3199092 GTCGAAAAATGAAAACGATTG-GTATTAAATCACAA
1 GTCAAAAAATGAAAATGATCGAG-ATTAAACCATGG
* * * * *
3199127 GCCAATGAAATAAAAATGATCGA-ATTAAATCATGA
1 GTCAA-AAAATGAAAATGATCGAGATTAAACCATGG
* * *
3199162 GTCAGAAAATGAAAACGATCAAGATTAAAC
1 GTCAAAAAATGAAAATGATCGAGATTAAAC
3199192 TACAAATCAG
Statistics
Matches: 582, Mismatches: 149, Indels: 70
0.73 0.19 0.09
Matches are distributed among these distances:
32 25 0.04
34 61 0.10
35 356 0.61
36 118 0.20
37 22 0.04
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.19
Consensus pattern (35 bp):
GTCAAAAAATGAAAATGATCGAGATTAAACCATGG
Found at i:3199189 original size:35 final size:35
Alignment explanation
Indices: 3198487--3199215 Score: 267
Period size: 35 Copynumber: 20.9 Consensus size: 35
3198477 CAATGGGGGG
* * * *
3198487 TTAAACCATAAGTCA-AAGAGTGAAAATAATCGAGA
1 TTAAACCATGAGTCAGAA-AATGAAAATGATCAAGA
* * *
3198522 TTAAACCATGAGTCAAAAAAAGAAAATGATCAAAA
1 TTAAACCATGAGTCAGAAAATGAAAATGATCAAGA
* * * *
3198557 TTAAA-C--GAGTAAAAAAATTAAAATGATC-GGCA
1 TTAAACCATGAGTCAGAAAATGAAAATGATCAAG-A
** * * * *
3198589 TTAAATAACGAGTCAAAGAAATAAAAATGA-CTAAAA
1 TTAAACCATGAGTCAGA-AAATGAAAATGATC-AAGA
* * * * *
3198625 TCAAATCACGAGTC-GAAAAATGAAAAAGATCGAGA
1 TTAAACCATGAGTCAG-AAAATGAAAATGATCAAGA
* * * * **
3198660 TTAGACCACT-AGTCAAAAAATGAAAA-CAACCGGAA
1 TTAAACCA-TGAGTCAGAAAATGAAAATGATCAAG-A
* * * ** *
3198695 CTAAATCACGAGTCAGAAAAT-AAAATTGGCCAAAA
1 TTAAACCATGAGTCAGAAAATGAAAA-TGATCAAGA
* *
3198730 TTAAATCATGAGTC-TAAAATCGAAAATGATCAAGA
1 TTAAACCATGAGTCAGAAAAT-GAAAATGATCAAGA
* * * * **
3198765 TTCAACCAAGAGTTAGAAAATTAAAACCA-CAAGGA
1 TTAAACCATGAGTCAGAAAATGAAAATGATCAA-GA
* * * *
3198800 TTAAACCACGAGTTAGAGAATGAAAATGA-CTGAGA
1 TTAAACCATGAGTCAGAAAATGAAAATGATC-AAGA
* ** * * *
3198835 TGAAACCACCAATCAGAAAACGAAAAATGATCAGGA
1 TTAAACCATGAGTCAGAAAATG-AAAATGATCAAGA
* * *
3198871 TTAAACCACGAGTCAAAAAATTAAAAATGATCGAA-A
1 TTAAACCATGAGTCAGAAAA-TGAAAATGATC-AAGA
* ** * * * **
3198907 TTAAATCACAAGTCAGAAAATAAAAAAGGT-GGGAA
1 TTAAACCATGAGTCAGAAAATGAAAATGATCAAG-A
** * * *
3198942 TTAAACCATGAGTCAGAAAACAAAAACGGTCGAGA
1 TTAAACCATGAGTCAGAAAATGAAAATGATCAAGA
* * ** *
3198977 TTAAATCATGAGTCAAAAAATGAAAACAACTGAA-A
1 TTAAACCATGAGTCAGAAAATGAAAATGA-TCAAGA
* * **
3199012 TTAAACCATGGGTCAAAAAATGAAAATGATCGGGA
1 TTAAACCATGAGTCAGAAAATGAAAATGATCAAGA
* * *
3199047 TT-AACCATGGGTTAGAAAATGAAAATGATCGAGA
1 TTAAACCATGAGTCAGAAAATGAAAATGATCAAGA
* * **
3199081 TTAAATCATGAGTC-GAAAAATGAAAACGAT-TGGTA
1 TTAAACCATGAGTCAG-AAAATGAAAATGATCAAG-A
* ** * * *
3199116 TTAAATCACAAGCCA-ATGAAATAAAAATGATCGA-A
1 TTAAACCATGAGTCAGA--AAATGAAAATGATCAAGA
* *
3199151 TTAAATCATGAGTCAGAAAATGAAAACGATCAAGA
1 TTAAACCATGAGTCAGAAAATGAAAATGATCAAGA
* ** *
3199186 TTAAACTACAAATCAGAAAATGAAAATGAT
1 TTAAACCATGAGTCAGAAAATGAAAATGAT
3199216 AATGAAAATT
Statistics
Matches: 520, Mismatches: 135, Indels: 78
0.71 0.18 0.11
Matches are distributed among these distances:
32 25 0.05
34 64 0.12
35 322 0.62
36 107 0.21
37 2 0.00
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (35 bp):
TTAAACCATGAGTCAGAAAATGAAAATGATCAAGA
Found at i:3199493 original size:106 final size:104
Alignment explanation
Indices: 3199302--3199498 Score: 236
Period size: 106 Copynumber: 1.9 Consensus size: 104
3199292 AACGACTAGA
* * * * *
3199302 ATTAAAGCATGAGTTAGAAAATGAAAATGACTGGGACTAAACCCTGAGTGAGAAAATGAGAACCA
1 ATTAAAGCATGAGTCAGAAAATGAAAATGACTAGGACTAAACCCTGAGTCAAAAAATGAAAACCA
*
3199367 CAAGGGTTAAACCATGAGTTAGAAAATGAAAGCAGTTGGG
66 CAAGGATTAAACCATGAGTTA-AAAATGAAAGCAGTTGGG
* * *
3199407 ATTAAA-CAATGAGTCAGAAAATGAAAAATGATTAGGATTACACCAC-GAGTCAAAAAATGAAAA
1 ATTAAAGC-ATGAGTCAGAAAATG-AAAATGACTAGGACTAAACC-CTGAGTCAAAAAATGAAAA
* * *
3199470 CGACTAGGATTAAATCATGAGTTAAAAAT
63 CCACAAGGATTAAACCATGAGTTAAAAAT
3199499 AAAAATGATA
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
104 1 0.01
105 25 0.32
106 50 0.65
107 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.20
Consensus pattern (104 bp):
ATTAAAGCATGAGTCAGAAAATGAAAATGACTAGGACTAAACCCTGAGTCAAAAAATGAAAACCA
CAAGGATTAAACCATGAGTTAAAAATGAAAGCAGTTGGG
Found at i:3200008 original size:71 final size:71
Alignment explanation
Indices: 3199928--3200061 Score: 175
Period size: 71 Copynumber: 1.9 Consensus size: 71
3199918 AATGAAAATG
** *
3199928 ATGGAGATGAAATGACT-AGTCAG-AAAATGAAAAATGAT-CGGGATTAAACCACGAGTCAAAAA
1 ATGGAGATGAAACCA-TGAGTCAGAAAAAT-AAAAATGATGC-GAATTAAACCACGAGTCAAAAA
3199990 ACGAAGAGA
63 ACGAAGAGA
* *
3199999 ATGGGGATGAAACCATGAGTCAGAAAAATAAAAATGATGCGAATTAAACCACGAGTGAAAAAA
1 ATGGAGATGAAACCATGAGTCAGAAAAATAAAAATGATGCGAATTAAACCACGAGTCAAAAAA
3200062 TGAAAACGAT
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
70 1 0.02
71 48 0.87
72 6 0.11
ACGTcount: A:0.50, C:0.11, G:0.23, T:0.16
Consensus pattern (71 bp):
ATGGAGATGAAACCATGAGTCAGAAAAATAAAAATGATGCGAATTAAACCACGAGTCAAAAAACG
AAGAGA
Found at i:3200235 original size:34 final size:35
Alignment explanation
Indices: 3200167--3200255 Score: 108
Period size: 34 Copynumber: 2.6 Consensus size: 35
3200157 AGTAATAAAC
* *
3200167 TAAAAACGATCGAGATTAAACCATGGGTTAGAAAA
1 TAAAAACGATAGAGATTAAACCATAGGTTAGAAAA
* * *
3200202 TGAAAACGATATAGATT-AACCTTAGGTTAGAAAA
1 TAAAAACGATAGAGATTAAACCATAGGTTAGAAAA
* *
3200236 TAAAAATGATCGAGATTAAA
1 TAAAAACGATAGAGATTAAA
3200256 TCATGAGTCA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
34 28 0.64
35 16 0.36
ACGTcount: A:0.49, C:0.09, G:0.18, T:0.24
Consensus pattern (35 bp):
TAAAAACGATAGAGATTAAACCATAGGTTAGAAAA
Found at i:3200277 original size:35 final size:35
Alignment explanation
Indices: 3199284--3200386 Score: 506
Period size: 35 Copynumber: 31.4 Consensus size: 35
3199274 TGCCTGTTGA
* * * *
3199284 AAAATGAAAACGA-CTAGAATTAAAGCATGAGTTAG
1 AAAATGAAAATGATCGAG-ATTAAACCATGAGTCAG
* * * *
3199319 AAAATGAAAATGA-CTGGGACTAAACCCTGAGTGAG
1 AAAATGAAAATGATC-GAGATTAAACCATGAGTCAG
* ** * * *
3199354 AAAATGAGAACCA-CAAGGGTTAAACCATGAGTTAG
1 AAAATGAAAATGATCGA-GATTAAACCATGAGTCAG
* * *
3199389 AAAATG-AAA-GCAGTTGGGATTAAACAATGAGTCAG
1 AAAATGAAAATG-A-TCGAGATTAAACCATGAGTCAG
* * * *
3199424 AAAATGAAAAATGAT-TAGGATTACACCACGAGTCAA
1 AAAATG-AAAATGATCGA-GATTAAACCATGAGTCAG
* * * *
3199460 AAAATGAAAACGA-CTAGGATTAAATCATGAGTTA-
1 AAAATGAAAATGATCGA-GATTAAACCATGAGTCAG
* * * * **
3199494 AAAATAAAAATGATAGGGATAAAACAACAT--GTTGG
1 AAAATGAAAATGATCGAGATTAAAC--CATGAGTCAG
* *
3199529 AAAATGAAAACT-A-CAGGGATTAAAGCATGAGTCAG
1 AAAATGAAAA-TGATC-GAGATTAAACCATGAGTCAG
** **
3199564 AAAATGTAAAACAAT-GAGGATTAAACCAAAAGTCA-
1 AAAATG-AAAATGATCGA-GATTAAACCATGAGTCAG
* * *
3199599 AAAAGAGAAAATGATAGAGATTAAACCATGACTCAGG
1 AAAA-TGAAAATGATCGAGATTAAACCATGAGTCA-G
* **
3199636 AAAATGAAAATGATCGAAATTAAATGATGAGTCA-
1 AAAATGAAAATGATCGAGATTAAACCATGAGTCAG
*
3199670 AAAATTGAAAATGATCG-GCATTCAACCATGAGTCA-
1 AAAA-TGAAAATGATCGAG-ATTAAACCATGAGTCAG
* * * *
3199705 AAGAATAAAAATGATCG-GAATCAAATCATGAGTCAA
1 AA-AATGAAAATGATCGAG-ATTAAACCATGAGTCAG
* * *
3199741 AAAATGAAAAAGATAGAGATTAAACCACGAGTCCA-
1 AAAATGAAAATGATCGAGATTAAACCATGAGT-CAG
** * * * * *
3199776 AAAATGAAAACAACTGGA-ACTAAATCACGAGTTAG
1 AAAATGAAAATGA-TCGAGATTAAACCATGAGTCAG
* * * * *
3199811 AAAATAAAAATGATCGAAATTAAATCATAAGTTTA-
1 AAAATGAAAATGATCGAGATTAAACCATGAG-TCAG
* * * *
3199846 AAACTAAAAACGATCGAGATTAAACCATGAGTCAA
1 AAAATGAAAATGATCGAGATTAAACCATGAGTCAG
* * * * * *
3199881 AAAATTAAAACGATAGGGATTAAACCTTGAGTTAG
1 AAAATGAAAATGATCGAGATTAAACCATGAGTCAG
* * * **
3199916 AGAATGAAAATGATGGAGATGAAATGACT-AGTCAG
1 AAAATGAAAATGATCGAGATTAAACCA-TGAGTCAG
* * *
3199951 AAAATGAAAAATGATCGGGATTAAACCACGAGTCAA
1 AAAATG-AAAATGATCGAGATTAAACCATGAGTCAG
* * * * *
3199987 AAAACGAAGA-GAATGGGGATGAAACCATGAGTCAG
1 AAAATGAAAATG-ATCGAGATTAAACCATGAGTCAG
* * * *
3200022 AAAAATAAAAATGATGCGA-ATTAAACCACGAGTGAA
1 -AAAATGAAAATGAT-CGAGATTAAACCATGAGTCAG
* * * *
3200058 AAAATGAAAACGATCGAGATTTAATCCCA--AGTAAA
1 AAAATGAAAATGATCGAGA-TTAA-ACCATGAGTCAG
* ** *
3200093 AAAATGAAAATGA-CTGAAATTAAACCACAAGTCAA
1 AAAATGAAAATGATC-GAGATTAAACCATGAGTCAG
* * * * * * *
3200128 AAAATAAAAAAGA-CCAGGATTAAATCACGAGTAAT
1 AAAATGAAAATGATCGA-GATTAAACCATGAGTCAG
* * * * *
3200163 AAACTAAAAACGATCGAGATTAAACCATGGGTTAG
1 AAAATGAAAATGATCGAGATTAAACCATGAGTCAG
* ** * *
3200198 AAAATGAAAACGATATAGATT-AACC-TTAGGTTAG
1 AAAATGAAAATGATCGAGATTAAACCATGA-GTCAG
* *
3200232 AAAATAAAAATGATCGAGATTAAATCATGAGTCAG
1 AAAATGAAAATGATCGAGATTAAACCATGAGTCAG
* ** *
3200267 AAAATGAAAATGATCG-GTATTAAATCACAAGCCA-
1 AAAATGAAAATGATCGAG-ATTAAACCATGAGTCAG
* * * *
3200301 ATGAAATAAAAATGATCAAAATTAAATCATGAGTCAG
1 A--AAATGAAAATGATCGAGATTAAACCATGAGTCAG
* * *
3200338 AAAATGAAAATGATCAAGATTAAACCTTGAATCAG
1 AAAATGAAAATGATCGAGATTAAACCATGAGTCAG
3200373 AAAATGAAAATGAT
1 AAAATGAAAATGAT
3200387 AATGAAATTT
Statistics
Matches: 816, Mismatches: 192, Indels: 120
0.72 0.17 0.11
Matches are distributed among these distances:
33 7 0.01
34 71 0.09
35 555 0.68
36 168 0.21
37 14 0.02
38 1 0.00
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (35 bp):
AAAATGAAAATGATCGAGATTAAACCATGAGTCAG
Found at i:3200442 original size:35 final size:35
Alignment explanation
Indices: 3200403--3200606 Score: 128
Period size: 35 Copynumber: 5.9 Consensus size: 35
3200393 ATTTACCAAA
* *
3200403 ATTAAATTATGAGTTAAAAAATGAAAATGACCCGG
1 ATTAAATCATGAGTTAAAAAATGAAAATGACCAGG
* * * *
3200438 ATTAAAATGCCT-A-TTGAAAAATGAAAATGACTAGA
1 ATT-AAAT-CATGAGTTAAAAAATGAAAATGACCAGG
* * * *
3200473 ATTAAAGCACGAGTTAGAAAATGAAAATGA-CTGCG
1 ATTAAATCATGAGTTAAAAAATGAAAATGACCAG-G
* * * * ** *
3200508 ACTAAATCCTGAGTGAGAAAATGAAAACCACTAGG
1 ATTAAATCATGAGTTAAAAAATGAAAATGACCAGG
* * ** * * *
3200543 ATTAAACCATGAGTCAGTAAATGAAAGTGATCGGG
1 ATTAAATCATGAGTTAAAAAATGAAAATGACCAGG
*
3200578 ATTAAATCATGAGTT-AAAAATAAAAATGA
1 ATTAAATCATGAGTTAAAAAATGAAAATGA
3200607 TAGGGATAAA
Statistics
Matches: 123, Mismatches: 40, Indels: 13
0.70 0.23 0.07
Matches are distributed among these distances:
33 1 0.01
34 15 0.12
35 100 0.81
36 6 0.05
37 1 0.01
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.23
Consensus pattern (35 bp):
ATTAAATCATGAGTTAAAAAATGAAAATGACCAGG
Found at i:3200584 original size:70 final size:68
Alignment explanation
Indices: 3200420--3200603 Score: 172
Period size: 70 Copynumber: 2.6 Consensus size: 68
3200410 TATGAGTTAA
* * ** *
3200420 AAAATGAAAATGACCCGGATTAAAATGCCT-ATTGAAAAATGAAAATGACTAGAATTAAAGCACG
1 AAAATGAAAATGA-CGGGATT-AAAT-CCTGAGTGAAAAATGAAAACCACTAGAATTAAACCACG
*
3200484 AGTTAG
63 AGTCAG
* * * *
3200490 AAAATGAAAATGACTGCGACTAAATCCTGAGTGAGAAAATGAAAACCACTAGGATTAAACCATGA
1 AAAATGAAAATGAC-GGGATTAAATCCTGAGTGA-AAAATGAAAACCACTAGAATTAAACCACGA
3200555 GTCAG
64 GTCAG
* * * * *
3200560 TAAATGAAAGTGATCGGGATTAAATCATGAGTTAAAAATAAAAA
1 AAAATGAAAATGA-CGGGATTAAATCCTGAGTGAAAAATGAAAA
3200604 TGATAGGGAT
Statistics
Matches: 93, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
68 3 0.03
69 18 0.19
70 71 0.76
71 1 0.01
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.21
Consensus pattern (68 bp):
AAAATGAAAATGACGGGATTAAATCCTGAGTGAAAAATGAAAACCACTAGAATTAAACCACGAGT
CAG
Found at i:3200915 original size:19 final size:19
Alignment explanation
Indices: 3200891--3200953 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
3200881 CAAAAATGAT
*
3200891 TAAAATTAAATCACGAGTC
1 TAAAATTAAATCATGAGTC
* *
3200910 TAAAA-TAAA-AATGA-AC
1 TAAAATTAAATCATGAGTC
3200926 -AAAATTAAATCATGAGTC
1 TAAAATTAAATCATGAGTC
3200944 TAAAATTAAA
1 TAAAATTAAA
3200954 AACGACCGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
15 4 0.11
16 5 0.14
17 7 0.20
18 5 0.14
19 14 0.40
ACGTcount: A:0.57, C:0.10, G:0.08, T:0.25
Consensus pattern (19 bp):
TAAAATTAAATCATGAGTC
Found at i:3200930 original size:34 final size:34
Alignment explanation
Indices: 3200877--3200955 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 34
3200867 CAGTAGTCAA
* **
3200877 AAAACAAAAATGATTAAAATTAAATCACGAGTCT
1 AAAATAAAAATGAACAAAATTAAATCACGAGTCT
*
3200911 AAAATAAAAATGAACAAAATTAAATCATGAGTCT
1 AAAATAAAAATGAACAAAATTAAATCACGAGTCT
3200945 AAAATTAAAAA
1 AAAA-TAAAAA
3200956 CGACCGAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
34 34 0.85
35 6 0.15
ACGTcount: A:0.61, C:0.09, G:0.08, T:0.23
Consensus pattern (34 bp):
AAAATAAAAATGAACAAAATTAAATCACGAGTCT
Found at i:3201004 original size:71 final size:71
Alignment explanation
Indices: 3200928--3201090 Score: 177
Period size: 71 Copynumber: 2.3 Consensus size: 71
3200918 AAATGAACAA
* * * * * ** * * *
3200928 AATTAAATCATGAGTCTAAAATTAAAAACGACCGAGATTAATCCATGAGTTATAAAATTAAAAAC
1 AATTAAACCATGAGTC-AAAAATAAAAACAACCGAAATAAATCCACCAGTCAGAAAATGAAAAAC
3200993 GA-TAGG
65 GATTAGG
* * *
3200999 AATTAAACCACGAGTCAGAAAATGAAAACAACCGAAATAAATCCACCAGTCAGAAAATGAAAAAT
1 AATTAAACCATGAGTCA-AAAATAAAAACAACCGAAATAAATCCACCAGTCAGAAAATGAAAAAC
3201064 GATTAGG
65 GATTAGG
3201071 -ATTAAACCATGAGTCAAAAA
1 AATTAAACCATGAGTCAAAAA
3201091 ATGAAGAAAA
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
70 5 0.07
71 67 0.88
72 4 0.05
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.20
Consensus pattern (71 bp):
AATTAAACCATGAGTCAAAAATAAAAACAACCGAAATAAATCCACCAGTCAGAAAATGAAAAACG
ATTAGG
Found at i:3201092 original size:71 final size:71
Alignment explanation
Indices: 3200694--3202305 Score: 261
Period size: 70 Copynumber: 22.7 Consensus size: 71
3200684 TTGAACCACA
** ** * * *
3200694 AGTCA-AAAA-GAGAAAATGA-TAGAGATTGGACCATGAGTCAGCAAATGAAAATGACCAAAATT
1 AGTCAGAAAATGA-AAAATGATTAG-GATTAAACCATGAGTCAAAAAATAAAAACGACCGAAATT
*
3200756 AAA-CGATG
64 AAATC-ACG
* * * * * * * *
3200764 AGCCAAAAAATG-AAAATGA-TCGACATTAAATCATGAGTCTAAGAAATAAAGACGATCGAAATT
1 AGTCAGAAAATGAAAAATGATTAG-GATTAAACCATGAGTC-AAAAAATAAAAACGACCGAAATT
3200827 AAATCACG
64 AAATCACG
* * * * * ***
3200835 AGTGAGAAAATGAAAAATGATTGGGATTGAACCA-GTAGTCAAAAAACAAAAATGATTAAAATTA
1 AGTCAGAAAATGAAAAATGATTAGGATTAAACCATG-AGTCAAAAAATAAAAACGACCGAAATTA
3200899 AATCACG
65 AATCACG
* ** ** * * * *
3200906 AGTC-TAAAAT-AAAAATGAACAAAATTAAATCATGAGTCTAAAATTAAAAACGACCGAGATT-A
1 AGTCAGAAAATGAAAAATGATTAGGATTAAACCATGAGTCAAAAAATAAAAACGACCGAAATTAA
*
3200968 ATCCATG
66 AT-CACG
* * * * * * * *
3200975 AGTTATAAAATTAAAAACGA-TAGGAATTAAACCACGAGTCAGAAAATGAAAACAACCGAAA-TA
1 AGTCAGAAAATGAAAAATGATTAGG-ATTAAACCATGAGTCAAAAAATAAAAACGACCGAAATTA
*
3201038 AATCCACC
65 AAT-CACG
* *
3201046 AGTCAGAAAATGAAAAATGATTAGGATTAAACCATGAGTCAAAAAATGAAGAAA--A-TGAGGAT
1 AGTCAGAAAATGAAAAATGATTAGGATTAAACCATGAGTCAAAAAAT-AA-AAACGACCGA-AAT
* *
3201108 TAAACCACA
63 TAAATCACG
* * * * * * * * * ** *
3201117 ATTCA-AAGAAAGAAAAATGACTAGAATTAAATCACGAATCAGAAAATGAAAACGATGGGAATTA
1 AGTCAGAA-AATGAAAAATGATTAGGATTAAACCATGAGTCAAAAAATAAAAACGACCGAAATTA
* **
3201181 AACCATA
65 AATCACG
* * ** * * **
3201188 AGTCAGAAAATG-AAAATGA-TCGAGATTAAATCACAAGTCAAAAAATAAAAATGACTGGGATTA
1 AGTCAGAAAATGAAAAATGATTAG-GATTAAACCATGAGTCAAAAAATAAAAACGACCGAAATTA
* *
3201251 AACCATG
65 AATCACG
* * ** * * * * * ** **
3201258 AGTCAAAAAAT-AAAAACGACCCA-AATTAAATCACGAGTCAAAAAATGAAAATGA-TTAGGGTT
1 AGTCAGAAAATGAAAAATGA-TTAGGATTAAACCATGAGTCAAAAAATAAAAACGACCGA-AATT
*
3201320 -AAGCTACG
64 AAATC-ACG
* * ** * * * * * * *
3201328 GGTCAG-AAATG-AAAACGACCATGATTAAACTAT-AGGTTAGAAAATGAAAACAACCGAGATTA
1 AGTCAGAAAATGAAAAATGATTAGGATTAAACCATGA-GTCAAAAAATAAAAACGACCGAAATTA
* *
3201390 AATTATG
65 AATCACG
* * * * ** * * * ***
3201397 AGTCAGAAAATG-AAAACGA-TCGATATTAAATCACAAGCCAGAGAAATAAAAATGGTTGAAATT
1 AGTCAGAAAATGAAAAATGATTAG-GATTAAACCATGAGTCA-AAAAATAAAAACGACCGAAATT
*
3201460 CAATCACG
64 AAATCACG
3201468 AGTCAGAAAATG-AAAATGATCTA-GATTAAACCATGAGTTAGACAAGAAAAATGATAATAAAAA
1 AGTCAGAAAATGAAAAATGAT-TAGGATTAAACCATGAG-T---C-----AAA--A-AATAAAAA
** ** * * *
3201531 TTATTGGAATTAAATTAGG
53 CGACCGAAATTAAATCACG
* * ** * * * *
3201550 AGACAGAAAATG-AATATGACCAGG-TCTAATACGC--GAGTTAAAAAATGAAAATGACCTAAAT
1 AGTCAGAAAATGAAAAATGATTAGGAT-TAA-AC-CATGAGTCAAAAAATAAAAACGACCGAAAT
**
3201611 TAAATCATA
63 TAAATCACG
* * * ** * ** **
3201620 AGTCAAAAAAT-AGAAATGA-CAGGGATTAAA-CAACACGTCAAAAAATGAAAACGATAGGGATT
1 AGTCAGAAAATGAAAAATGATTA-GGATTAAACCATGA-GTCAAAAAATAAAAACGACCGAAATT
*
3201682 AAAGCACG
64 AAATCACG
* * * * * * * ** *
3201690 AGACAGAAAAT-ATAAAA-CAATAGGGATTAAACCATAAGTCGAAAAGTGAAAGTGA-AGAAGAT
1 AGTCAGAAAATGA-AAAATGATTA-GGATTAAACCATGAGTCAAAAAATAAAAACGACCGAA-AT
* *
3201752 TAAATGATG
63 TAAATCACG
* * * *
3201761 AGTCAAAAAAT-AAAAAGGA--ACGGCATTAAATCATGAGTCAAAAAAATAAAAATGACC-AGAA
1 AGTCAGAAAATGAAAAATGATTA-GG-ATTAAACCATGAGTC-AAAAAATAAAAACGACCGA-AA
* *
3201822 TCAAATCATG
62 TTAAATCACG
* ** ** * *
3201832 AGTTAGAAAATG-AAAATGACCAGGATTAAACCACT-AGTCAAGTAATGAAAATGACTCG-AATT
1 AGTCAGAAAATGAAAAATGATTAGGATTAAACCA-TGAGTCAAAAAATAAAAACGAC-CGAAATT
3201894 AAATCACG
64 AAATCACG
* * ** ** * * * ** * *
3201902 AGTTAAAAAAT-AAAAATGACCAAAATTAAATCATGAGCCTAAATTTGAAAATGACC-AAGATTA
1 AGTCAGAAAATGAAAAATGATTAGGATTAAACCATGAGTCAAAAAATAAAAACGACCGAA-ATTA
* *
3201965 AACCACA
65 AATCACG
* * * * ** * * * * ** * *
3201972 AGTCAAAAAAT-TAAAACGATAAGGATTAAACCACAAGTTAAAGAATGAAAATGATAGAGATGAA
1 AGTCAGAAAATGAAAAATGATTAGGATTAAACCATGAGTCAAAAAATAAAAACGACCGAAATTAA
* *
3202036 ACCACC
66 ATCACG
* * * * * ** **
3202042 AGTCAAAAAATGAAAAATGATCT-GGATTAAACCATGAGTTAGAAAATAAAGACAATAGGGATTA
1 AGTCAGAAAATGAAAAATGAT-TAGGATTAAACCATGAGTCAAAAAATAAAAACGACCGAAATTA
* *
3202106 AACCATG
65 AATCACG
** * * * * * * * **
3202113 AGTCAGAGAAAT-AAAAATGACCAGAATCAAAACATGAGCCAGAAAATGAAAACGATCGGGATTA
1 AGTCAGA-AAATGAAAAATGATTAGGATTAAACCATGAGTCAAAAAATAAAAACGACCGAAATTA
*
3202177 AATCATG
65 AATCACG
* *** ** * * * *
3202184 AGTCAAAAAAT-AAAAGCAATCGGGATTAAACAATGAGTCAAAAAATAAAAATGACCTAGATTAA
1 AGTCAGAAAATGAAAAATGATTAGGATTAAACCATGAGTCAAAAAATAAAAACGACCGAAATTAA
*
3202248 ATCACA
66 ATCACG
* ** ** * * *
3202254 AGTCAAAAAATG-AAAATGACCACAATTAAACCATGGGTCAGAAAATGAAAAC
1 AGTCAGAAAATGAAAAATGATTAGGATTAAACCATGAGTCAAAAAATAAAAAC
3202306 AACTAGGATT
Statistics
Matches: 1135, Mismatches: 320, Indels: 174
0.70 0.20 0.11
Matches are distributed among these distances:
67 1 0.00
68 7 0.01
69 101 0.09
70 473 0.42
71 445 0.39
72 43 0.04
73 10 0.01
75 1 0.00
79 1 0.00
80 1 0.00
81 4 0.00
82 45 0.04
83 2 0.00
84 1 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (71 bp):
AGTCAGAAAATGAAAAATGATTAGGATTAAACCATGAGTCAAAAAATAAAAACGACCGAAATTAA
ATCACG
Found at i:3201297 original size:105 final size:105
Alignment explanation
Indices: 3199418--3203959 Score: 1007
Period size: 105 Copynumber: 42.6 Consensus size: 105
3199408 TTAAACAATG
* * * * * *
3199418 AGTCAGAAAATGAAAAATGATTAGGATTACACCACGAGTCAAAAAATGAAAACGA-CTAGGATTA
1 AGTCAAAAAATG-AAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGA-GATTA
* * * * * *
3199482 AATCATGAGTTA-AAAATAAAAATGATAGGGA-TAAAACAACA
64 AACCATGAGTCAGAAAATGAAAATGATCGAGATTAAATC-ACA
* *** * * * **
3199523 TGTTGGAAAATGAAAACT-AC-AGGGATTAAAGCATGAGTCAGAAAATGTAAAA-CAATGAGGAT
1 AGTCAAAAAATGAAAA-TGACTA-GGATTAAACCATGAGTCAAAAAATG-AAAATGACCGA-GAT
** * * * **
3199585 TAAACCAAAAGTCA-AAAAGAGAAAATGATAGAGATTAAACCATG
62 TAAACCATGAGTCAGAAAA-TGAAAATGATCGAGATTAAATCACA
* * * * ** * *
3199629 ACTCAGGAAAATGAAAATGA-TCGAAATTAAATGATGAGTCAAAAATTGAAAATGATCG-GCATT
1 AGTCA-AAAAATGAAAATGACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACCGAG-ATT
* * * **
3199692 CAACCATGAGTCA-AAGAATAAAAATGATCG-GAATCAAATCATG
63 AAACCATGAGTCAGAA-AATGAAAATGATCGAG-ATTAAATCACA
* * * ** * *
3199735 AGTCAAAAAATGAAAAAGA-TAGAGATTAAACCACGAGTCCAAAAATGAAAACAACTG-GAACTA
1 AGTCAAAAAATGAAAATGACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACCGAG-ATTA
* * * * * *
3199798 AATCACGAGTTAGAAAATAAAAATGATCGAAATTAAATCATA
64 AACCATGAGTCAGAAAATGAAAATGATCGAGATTAAATCACA
** * * * * * * ** *
3199840 AGTTTAAAACTAAAAACGA-TCGAGATTAAACCATGAGTCAAAAAATTAAAACGATAGGGATTAA
1 AGTCAAAAAATGAAAATGACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAA
* * * * * * *
3199904 ACCTTGAGTTAGAGAATGAAAATGATGGAGATGAAATGACT
65 ACCATGAGTCAGAAAATGAAAATGATCGAGATTAAATCACA
* * * * * ** * *
3199945 AGTCAGAAAATGAAAAATGA-TCGGGATTAAACCACGAGTCAAAAAACGAAGA-GAATGGGGATG
1 AGTCAAAAAATG-AAAATGACT-AGGATTAAACCATGAGTCAAAAAATGAAAATG-ACCGAGATT
* * *
3200008 AAACCATGAGTCAGAAAAATAAAAATGATGCGA-ATTAAACCACG
63 AAACCATGAGTCAG-AAAATGAAAATGAT-CGAGATTAAATCACA
* * * * * * *
3200052 AGTGAAAAAATGAAAACGA-TCGAGATTTAATCCCA--AGTAAAAAAATGAAAATGACTGAAATT
1 AGTCAAAAAATGAAAATGACTAG-GA-TTAA-ACCATGAGTCAAAAAATGAAAATGACCGAGATT
** * * * * *
3200114 AAACCACAAGTCAAAAAATAAAAAAGA-CCAGGATTAAATCACG
63 AAACCATGAGTCAGAAAATGAAAATGATCGA-GATTAAATCACA
* * * * * * * * ***
3200157 AGT-AATAAACTAAAAACGA-TCGAGATTAAACCATGGGTTAGAAAATGAAAACGATATAGATT-
1 AGTCAA-AAAATGAAAATGACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTA
* * * **
3200219 AACC-TTAGGTTAGAAAATAAAAATGATCGAGATTAAATCATG
64 AACCATGA-GTCAGAAAATGAAAATGATCGAGATTAAATCACA
* * * ** * * * * * *
3200261 AGTCAGAAAATGAAAATGA-TCGGTATTAAATCACAAGCCAATGAAATAAAAATGATCAAAATTA
1 AGTCAAAAAATGAAAATGACTAGG-ATTAAACCATGAGTCAA-AAAATGAAAATGACCGAGATTA
* * *
3200325 AATCATGAGTCAGAAAATGAAAATGATCAAGATTAAACCTTGAATCAGAA
64 AACCATGAGTCAGAAAATGAAAATGATCGAGATT--A-----AATCA-CA
* * * * * ** ** *
3200375 AATGAAAATGATAATGAAATTTACCAAAATTAAATTATGAGTTAAAAAATGAAAATGACCCG-GA
1 AGT-CAAA--A-AATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGA-CCGAGA
** * * *
3200439 TTAAA--ATGCCT-ATTGAAAAATGAAAATGA-CTAGAATTAAAGCACG
61 TTAAACCATGAGTCA--G-AAAATGAAAATGATCGAG-ATTAAATCACA
* * * * * ** *
3200484 AGTTAGAAAATGAAAATGACT-GCGACTAAATCC-TGAGTGAGAAAATGAAAACCA-CTAGGATT
1 AGTCAAAAAATGAAAATGACTAG-GATTAAA-CCATGAGTCAAAAAATGAAAATGACCGA-GATT
* * * **
3200546 AAACCATGAGTCAGTAAATGAAAGTGATCGGGATTAAATCATG
63 AAACCATGAGTCAGAAAATGAAAATGATCGAGATTAAATCACA
* * * * *** * *
3200589 AGT-TAAAAATAAAAATGA-TAGGGA-TAAAGCAGTGTGTTGGAAAATGAAAACT-A-CAAGGAA
1 AGTCAAAAAATGAAAATGACTA-GGATTAAACCA-TGAGTCAAAAAATGAAAA-TGACCGA-GAT
* * * ** * * *
3200649 TAAAGCACGAGTCAAAAAATGTAAAACAATATG-GATTGAACCACA
62 TAAACCATGAGTCAGAAAATG-AAAATGAT-CGAGATTAAATCACA
** ** * *
3200694 AGTCAAAAAGA-GAAAATGA-TAGAGATTGGACCATGAGTCAGCAAATGAAAATGACCAAAATTA
1 AGTCAAAAA-ATGAAAATGACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTA
* * * * **
3200757 AACGATGAGCCAAAAAATGAAAATGATCGACATTAAATCATG
64 AACCATGAGTCAGAAAATGAAAATGATCGAGATTAAATCACA
* * * * * * * * ** *
3200799 AGTCTAAGAAAT-AAAGACGA-TCGAAATTAAATCACGAGTGAGAAAATGAAAAATGATTGGGAT
1 AGTC-AAAAAATGAAA-ATGACTAG-GATTAAACCATGAGTCAAAAAATG-AAAATGACCGAGAT
* * ** ** * *
3200862 TGAACCA-GTAGTCAAAAAACAAAAATGATTAAAATTAAATCACG
62 TAAACCATG-AGTCAGAAAATGAAAATGATCGAGATTAAATCACA
* * ** * * * * *
3200906 AGTC-TAAAATAAAAATGAAC-AAAATTAAATCATGAGTCTAAAATTAAAAACGACCGAGATTAA
1 AGTCAAAAAATGAAAATG-ACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAA
* * * * * * * *
3200969 TCCATGAGTTATAAAATTAAAAACGATAG-GAATTAAACCACG
65 ACCATGAGTCAGAAAA-TGAAAATGATCGAG-ATTAAATCACA
* ** * * * ** * **
3201011 AGTCAGAAAATGAAAACAAC-CGAAATAAATCCACCAGTCAGAAAATGAAAAATGA-TTAGGATT
1 AGTCAAAAAATGAAAATGACTAGGATTAAA-CCATGAGTCAAAAAATG-AAAATGACCGA-GATT
* * *
3201074 AAACCATGAGTCAAAAAATGAAGAA-AAT-GAGGATTAAACCACA
63 AAACCATGAGTCAGAAAATGAA-AATGATCGA-GATTAAATCACA
* * * * * * * * *
3201117 ATTCAAAGAAA-GAAAAATGACTAGAATTAAATCACGAATCAGAAAATGAAAACGA-TGGGAATT
1 AGTCAAA-AAATG-AAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAG-ATT
*
3201180 AAACCATAAGTCAGAAAATGAAAATGATCGAGATTAAATCACA
63 AAACCATGAGTCAGAAAATGAAAATGATCGAGATTAAATCACA
* * * * * *
3201223 AGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAAAAAATAAAAACGACCCAAATTAAA
1 AGTCAAAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAA
* * * * * * *
3201288 TCACGAGTCAAAAAATGAAAATGAT-TAGGGTT-AAGCTACG
66 CCATGAGTCAGAAAATGAAAATGATCGA-GATTAAATC-ACA
* * * * * * * * **
3201328 GGTC-AGAAATGAAAACGACCATGATTAAACTAT-AGGTTAGAAAATGAAAACAACCGAGATTAA
1 AGTCAAAAAATGAAAATGACTAGGATTAAACCATGA-GTCAAAAAATGAAAATGACCGAGATTAA
** * *
3201391 ATTATGAGTCAGAAAATGAAAACGATCGATATTAAATCACA
65 ACCATGAGTCAGAAAATGAAAATGATCGAGATTAAATCACA
* * * * * * * * * * * *
3201432 AGCCAGAGAAATAAAAATG-GTTGAAATTCAATCACGAGTCAGAAAATGAAAATGATCTAGATTA
1 AGTCA-AAAAATGAAAATGACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTA
* * * **
3201496 AACCATGAGTTAGACAAGAAAAATGATAATAAAAATTATTG-GAATTAAATTAGG
64 AACCATGAG-T---C-AG-AAAATG------AAAATGATCGAG-ATTAAATCACA
* * * * * * *
3201550 AGACAGAAAATGAATATGACCAGG-TCTAATACGC--GAGTTAAAAAATGAAAATGACCTAAATT
1 AGTCAAAAAATGAAAATGACTAGGAT-TAA-AC-CATGAGTCAAAAAATGAAAATGACCGAGATT
* * * *
3201612 AAATCATAAGTCAAAAAAT-AGAAATGA-CAGGGATTAAA-CAACA
63 AAACCATGAGTCAGAAAATGA-AAATGATC-GAGATTAAATC-ACA
* * * * * ** ** *
3201655 CGTCAAAAAATGAAAACGA-TAGGGATTAAAGCACGAGACAGAAAATAT-AAAACAATAGGGATT
1 AGTCAAAAAATGAAAATGACTA-GGATTAAACCATGAGTCA-AAAA-ATGAAAATGACCGAGATT
* * * * **
3201718 AAACCATAAGTC-GAAAAGTGAAAGTGA-AGAAGATTAAATGATG
63 AAACCATGAGTCAGAAAA-TGAAAATGATCG-AGATTAAATCACA
* * * *
3201761 AGTCAAAAAATAAAAAGGA--ACGGCATTAAATCATGAGTCAAAAAAATAAAAATGACC-AGAAT
1 AGTCAAAAAATGAAAATGACTA-GG-ATTAAACCATGAGTC-AAAAAATGAAAATGACCGAG-AT
* * * * * *
3201823 CAAATCATGAGTTAGAAAATGAAAATGA-CCAGGATTAAACCACT
62 TAAACCATGAGTCAGAAAATGAAAATGATCGA-GATTAAATCACA
** * * * * * * * *
3201867 AGTCAAGTAATGAAAATGACTCGAATTAAATCACGAGTTAAAAAATAAAAATGACCAAAATTAAA
1 AGTCAAAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAA
* * ** * * *
3201932 TCATGAGCCTA-AATTTGAAAATGACCAAGATTAAACCACA
66 CCATGAGTC-AGAAAATGAAAATGATCGAGATTAAATCACA
* * ** * * ** *
3201972 AGTCAAAAAATTAAAACGA-TAAGGATTAAACCACAAGTTAAAGAATGAAAATGATAGAGATGAA
1 AGTCAAAAAATGAAAATGACT-AGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAA
** * * **
3202036 ACCACCAGTCAAAAAATGAAAAATGATCTG-GATTAAACCATG
65 ACCATGAGTCAGAAAATG-AAAATGATC-GAGATTAAATCACA
* * * *
3202078 AGTTAGAAAAT--AAA-GACAATAGGGATTAAACCATGAGTCAGAGAAATAAAAATGACC-AGAA
1 AGTCAAAAAATGAAAATGAC--TA-GGATTAAACCATGAGTCA-AAAAATGAAAATGACCGAG-A
* * * * * **
3202139 TCAAAACATGAGCCAGAAAATGAAAACGATCGGGATTAAATCATG
61 TTAAACCATGAGTCAGAAAATGAAAATGATCGAGATTAAATCACA
* * * * *
3202184 AGTCAAAAAAT-AAAA-GCAATCGGGATTAAACAATGAGTCAAAAAATAAAAATGACCTAGATTA
1 AGTCAAAAAATGAAAATG-ACT-AGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTA
* ** * * * * **
3202247 AATCACAAGTCAAAAAATGAAAATGA-CCACAATTAAACCATG
64 AACCATGAGTCAGAAAATGAAAATGATCGA-GATTAAATCACA
* * ** * * * *
3202289 GGTCAGAAAATGAAAACAACTAGGATTAAACCATGGGTTAGAAAATGAAAATGACTGAGATTAAA
1 AGTCAAAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAA
* * * * ** * *
3202354 TCATAAGTTAGAAAATGAGAACAATCAATATTAAATCACA
66 CCATGAGTCAGAAAATGAAAATGATCGAGATTAAATCACA
** * * * * * * * * *
3202394 AG-CTAGAGTAAT-AAAAGTGA-TTGAAATTAAATCAAGAGTTAGAAAATGAAAACGATCGAGAC
1 AGTC-A-AAAAATGAAAA-TGACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACCGAGAT
** ** * * *
3202456 TAAACCATGAGTTTGAAAATGAAAACAGTAATGAAAATTATAGGAATTATATTACG
62 TAAACCATGAGTCAGAAAATG---A-A--AATG---A-TCGA-G-ATTAAATCACA
* * * * **
3202512 AGTCTAAAAATGAAAATGACCAGGATCAGAACGCA--AGTTAAAAAATGAAAATGACCGTTATTA
1 AGTCAAAAAATGAAAATGACTAGGATTA-AAC-CATGAGTCAAAAAATGAAAATGACCGAGATTA
* ** * * * * *
3202575 AAGCACAAGTCAAAAAATGAAAATGA-CTGGGACTAAA-CCCTG
64 AACCATGAGTCAGAAAATGAAAATGATC-GAGATTAAATCAC-A
* * * ** * * ** **
3202617 ACTGAGAAAATGAAAACCACTACGATTAAACCATGAGTCAGAAAATGAAAGCGATTGAGATTAAA
1 AGTCAAAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAA
* * * * *
3202682 CGATGAGTCAAAAAATGAAAAATGATTGGGATTAAATCAGA
66 CCATGAGTCAGAAAATG-AAAATGATCGAGATTAAATCACA
* * * * * ** * *
3202723 AGTCAAAAAATAAAAATGAC-AGGGGTTAAACAATGCA-TCGAAAAATAAAAATGATAGGGATGA
1 AGTCAAAAAATGAAAATGACTA-GGATTAAACCATG-AGTCAAAAAATGAAAATGACCGAGATTA
* * ** * * * *
3202786 AAGCATGAGTTAGAAAATGTAAAACAATAGGGGATTAAACCATA
64 AACCATGAGTCAGAAAATG-AAAATGAT-CGAGATTAAATCACA
* * * * * * * * * *
3202830 AGTCCAAAAGTGAAAATGACCATGATTAAACCATGAGTTAGAAAATGAAAACGACCAAAAATAAA
1 AGTCAAAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAA
** ** * * * * *
3202895 TGACAAGTCAAAAAATGAAAATGACCAATATTAAATCACG
66 CCATGAGTCAGAAAATGAAAATGATCGAGATTAAATCACA
* * * ** * * *
3202935 AGTCAAAGAAATAAAAATAACCAAAATCAAATCATGAGTC-AAAAATGAAAATGACCGTGATTAA
1 AGTCAAA-AAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAA
* * *
3202999 ACCACT-AGTCA-AGAAACGAAAATGATCGAAATTAAATCATA
65 ACCA-TGAGTCAGA-AAATGAAAATGATCGAGATTAAATCACA
* * * * * * * *
3203040 AGTCAGAAAATAAAAATGAAT-GAAATTAAATCACGAGTCTAAAATTGAAAATGACC-AGATTAA
1 AGTCAAAAAATGAAAATGACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAA
* * * * *
3203103 ACCACGAATTAGAAAATTAAAATGA-CAAGGATTAAA-CACA
65 ACCATGAGTCAGAAAATGAAAATGATCGA-GATTAAATCACA
* * * * * * ** * *
3203143 AGTCAGAGAATGAAAATGACCAGGATGAAACCA-GCAGTCAGAAAATGAAAAATAATTGGGATGA
1 AGTCAAAAAATGAAAATGACTAGGATTAAACCATG-AGTCAAAAAATG-AAAATGACCGAGATTA
* * * * * * * *
3203207 AACTA-GCAGTCAGAATATGAAAAATAATTGGGGTTAAACCATA
64 AACCATG-AGTCAGAAAATG-AAAATGATCGAGATTAAATCACA
* * * * * * * *
3203250 AGTCAGAAAATGAAGA-CAATGGGGATTAAACCATGAGTCAGAGAAATAAAAATGA-CTAGAATT
1 AGTCAAAAAATGAAAATGACT-AGGATTAAACCATGAGTCA-AAAAATGAAAATGACCGAG-ATT
* * * * ** * * * *
3203313 AAATCACGATTCAGAAAAAGAAAACCAT-GGGAATTACACCACG
63 AAACCATGAGTCAGAAAATGAAAATGATCGAG-ATTAAATCACA
* * * ** * ** *
3203356 AGTCAGAAAATGAAAACGA-TCGGGATTAATTCATGAGTCAAAAAATAAAAACAACCAAGATTAA
1 AGTCAAAAAATGAAAATGACT-AGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAA
** * * *
3203420 ACCACAAGTCAAAAAATAAAAATGACCTG-GATTAAATCACAA
65 ACCATGAGTCAGAAAATGAAAATGATC-GAGATTAAATCAC-A
* * * ** * * * *
3203462 AATTAGAAAATGAAAACAACAAGGATTAAACCATGGGTC-AAAAATGAAAACGACCAAGATTAAA
1 AGTCAAAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAA
* * * *
3203526 CCATGGGTTATAAAATGAAAATGATTG-GTATTAAATCACA
66 CCATGAGTCAGAAAATGAAAATGATCGAG-ATTAAATCACA
* ** * * * ** * *
3203566 AG-CTAGAGAAACAAAAATGA-TTGAAATTAAATCACAAGTCAGAAAATGAAAATGATCGAGATT
1 AGTC-A-AAAAATGAAAATGACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATT
** * * * * **
3203629 AAACCACAAGTCAAAAAATGAAAGTGATAATGAAAATTATCAAAATTAAATTATG
63 AAACCATGAGTC-----A-G--A---A-AATGAAAATGATCGAGATTAAATCACA
* * * * *
3203684 AGTCAAAAAATGAAAATGACCTA-GATCAAAACATGAGTTAAAAAGTGAAAATGACCGAAATTAA
1 AGTCAAAAAATGAAAATGA-CTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAA
* * * * * * * *
3203748 AGCATGACTCAGGAAATGAAAA-CAACTAGGACTAAA-CCCTA
65 ACCATGAGTCAGAAAATGAAAATGATCGA-GATTAAATCAC-A
* * ** * * * ** * * * *
3203789 AGTGAGAAAATGAAAACCACCAAGATTGAACCACAAGTCAGAAAATGAAAGTGTCAG-GATTAAA
1 AGTCAAAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAA
* * ** * * * * **
3203853 CGATGAGTCAGGAAATGAAAAACAACTAGGATTATACCATG
66 CCATGAGTCAGAAAATGAAAATGATCGA-GATTAAATCACA
* * *
3203894 AGTCAAAAAATGAAAATGACTAGGATTAAATCATGAGTCAAAAAATAAAAATGACAGAGATTAAA
1 AGTCAAAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAA
3203959 C
66 C
3203960 GATAGGGATT
Statistics
Matches: 3210, Mismatches: 965, Indels: 523
0.68 0.21 0.11
Matches are distributed among these distances:
102 2 0.00
103 58 0.02
104 353 0.11
105 1178 0.37
106 921 0.29
107 355 0.11
108 25 0.01
109 3 0.00
110 5 0.00
111 13 0.00
112 10 0.00
113 7 0.00
114 5 0.00
115 8 0.00
116 8 0.00
117 171 0.05
118 82 0.03
119 6 0.00
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (105 bp):
AGTCAAAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAA
CCATGAGTCAGAAAATGAAAATGATCGAGATTAAATCACA
Found at i:3201427 original size:35 final size:35
Alignment explanation
Indices: 3200455--3201505 Score: 284
Period size: 35 Copynumber: 29.9 Consensus size: 35
3200445 TGCCTATTGA
* * * * *
3200455 AAAATGAAAATGA-CTAGAATTAAAGCACGAGTTAG
1 AAAATGAAAACGATCGAG-ATTAAACCATGAGTCAG
* * * *
3200490 AAAATGAAAATGA-CTGCGACTAAATCC-TGAGTGAG
1 AAAATGAAAACGATC-GAGATTAAA-CCATGAGTCAG
* *
3200525 AAAATGAAAACCA-CTAGGATTAAACCATGAGTCAG
1 AAAATGAAAACGATCGA-GATTAAACCATGAGTCAG
* ** * * *
3200560 TAAATGAAAGTGATCGGGATTAAATCATGAGTTA-
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * * * * * **
3200594 AAAATAAAAATGATAGGGA-TAAAGCAGTGTGTTGG
1 AAAATGAAAACGATCGAGATTAAACCA-TGAGTCAG
* * * * * *
3200629 AAAATGAAAACTA-CAAGGAATAAAGCACGAGTCAA
1 AAAATGAAAACGATCGA-GATTAAACCATGAGTCAG
* * * **
3200664 AAAATGTAAAACAATATG-GATTGAACCACAAGTCA-
1 AAAATG-AAAACGAT-CGAGATTAAACCATGAGTCAG
* * * **
3200699 AAAAGAGAAAATGATAGAGATTGGACCATGAGTCAG
1 AAAA-TGAAAACGATCGAGATTAAACCATGAGTCAG
* * * * * * * *
3200735 CAAATGAAAATGACCAAAATTAAACGATGAGCCAA
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * *
3200770 AAAATGAAAATGATCGACATTAAATCATGAGTCTA-
1 AAAATGAAAACGATCGAGATTAAACCATGAGTC-AG
* * * *
3200805 AGAAAT-AAAGACGATCGAAATTAAATCACGAGTGAG
1 A-AAATGAAA-ACGATCGAGATTAAACCATGAGTCAG
* * * * *
3200841 AAAATGAAAAATGATTGGGATTGAACCA-GTAGTCAA
1 AAAATG-AAAACGATCGAGATTAAACCATG-AGTCAG
** * ** * * * *
3200877 AAAACAAAAATGATTAAAATTAAATCACGAGTC-T
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * * * * *
3200911 AAAATAAAAATGAACAAAATTAAATCATGAGTCTA-
1 AAAATGAAAACGATCGAGATTAAACCATGAGTC-AG
* * * * * *
3200946 AAATTAAAAACGACCGAGATTAATCCATGAGTTAT
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * *
3200981 AAAATTAAAAACGATAG-GAATTAAACCACGAGTCAG
1 AAAA-TGAAAACGATCGAG-ATTAAACCATGAGTCAG
* * * **
3201017 AAAATGAAAACAACCGA-AATAAATCCACCAGTCAG
1 AAAATGAAAACGATCGAGATTAAA-CCATGAGTCAG
* * *
3201052 AAAATGAAAAATGAT-TAGGATTAAACCATGAGTCAA
1 AAAATG-AAAACGATCGA-GATTAAACCATGAGTCAG
* ** *
3201088 AAAATGAAGAA-AAT-GAGGATTAAACCACAATTCA-
1 AAAATGAA-AACGATCGA-GATTAAACCATGAGTCAG
* * * * * *
3201122 AAGAAAGAAAAATGA-CTAGAATTAAATCACGAATCAG
1 AA-AATG-AAAACGATCGAG-ATTAAACCATGAGTCAG
* *
3201159 AAAATGAAAACGAT-GGGAATTAAACCATAAGTCAG
1 AAAATGAAAACGATCGAG-ATTAAACCATGAGTCAG
* * ** *
3201194 AAAATGAAAATGATCGAGATTAAATCACAAGTCAA
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * * *
3201229 AAAATAAAAATGA-CTGGGATTAAACCATGAGTCAA
1 AAAATGAAAACGATC-GAGATTAAACCATGAGTCAG
* * * * * * *
3201264 AAAATAAAAACGACCCAAATTAAATCACGAGTCAA
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * * * * * *
3201299 AAAATGAAAATGAT-TAGGGTTAAGCTACGGGTCAG
1 AAAATGAAAACGATCGA-GATTAAACCATGAGTCAG
* * *
3201334 -AAATGAAAACGA-CCATGATTAAACTAT-AGGTTAG
1 AAAATGAAAACGATCGA-GATTAAACCATGA-GTCAG
* * **
3201368 AAAATGAAAACAACCGAGATTAAATTATGAGTCAG
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * ** *
3201403 AAAATGAAAACGATCGATATTAAATCACAAGCCAG
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * * * * * * *
3201438 AGAAATAAAAATGGTTGAAATTCAATCACGAGTCAG
1 A-AAATGAAAACGATCGAGATTAAACCATGAGTCAG
* *
3201474 AAAATGAAAATGATCTAGATTAAACCATGAGT
1 AAAATGAAAACGATCGAGATTAAACCATGAGT
3201506 TAGACAAGAA
Statistics
Matches: 761, Mismatches: 204, Indels: 102
0.71 0.19 0.10
Matches are distributed among these distances:
33 6 0.01
34 86 0.11
35 478 0.63
36 181 0.24
37 10 0.01
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.20
Consensus pattern (35 bp):
AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
Found at i:3201648 original size:35 final size:34
Alignment explanation
Indices: 3201609--3201815 Score: 109
Period size: 35 Copynumber: 5.9 Consensus size: 34
3201599 AATGACCTAA
3201609 ATTAAATCATAAGTCAAAAAATAGAAATGACAGGG
1 ATTAAATCATAAGTCAAAAAATAGAAATGA-AGGG
*
3201644 ATTAAA-CA-ACACGTCAAAAAAT-GAAAACGATAGGG
1 ATTAAATCATA-A-GTCAAAAAATAG-AAATGA-AGGG
* ** * **
3201679 ATTAAAGCACGAGACAGAAAATATA-AAACAATAGGG
1 ATTAAATCATAAGTCA-AAAA-ATAGAAATGA-AGGG
* * * *
3201715 ATTAAACCATAAGTCGAAAAGT-GAAAGTGAAGAAG
1 ATTAAATCATAAGTCAAAAAATAGAAA-TGAAG-GG
* * * * *
3201750 ATTAAATGATGAGTCAAAAAATAAAAAGGAACGGC
1 ATTAAATCATAAGTCAAAAAATAGAAATGAA-GGG
* *
3201785 ATTAAATCATGAGTCAAAAAAATAAAAATGA
1 ATTAAATCATAAGTC-AAAAAATAGAAATGA
3201816 CCAGAATCAA
Statistics
Matches: 133, Mismatches: 25, Indels: 27
0.72 0.14 0.15
Matches are distributed among these distances:
33 1 0.01
34 10 0.08
35 74 0.56
36 46 0.35
37 2 0.02
ACGTcount: A:0.55, C:0.10, G:0.18, T:0.17
Consensus pattern (34 bp):
ATTAAATCATAAGTCAAAAAATAGAAATGAAGGG
Found at i:3201842 original size:35 final size:35
Alignment explanation
Indices: 3201750--3202369 Score: 223
Period size: 35 Copynumber: 17.6 Consensus size: 35
3201740 AGTGAAGAAG
* * * * * *
3201750 ATTAAATGATGAGTCAAAAAATAAAAAGGAACGGC
1 ATTAAATCATGAGTTAAAAAATAAAAATGACCAGA
*
3201785 ATTAAATCATGAGTCAAAAAAATAAAAATGACCAGA
1 ATTAAATCATGAGT-TAAAAAATAAAAATGACCAGA
* * * *
3201821 ATCAAATCATGAGTTAGAAAATGAAAATGACCAGG
1 ATTAAATCATGAGTTAAAAAATAAAAATGACCAGA
* * ** *
3201856 ATTAAACCACT-AGTCAAGTAATGAAAATGACTC-GA
1 ATTAAATCA-TGAGTTAAAAAATAAAAATGAC-CAGA
* *
3201891 ATTAAATCACGAGTTAAAAAATAAAAATGACCAAA
1 ATTAAATCATGAGTTAAAAAATAAAAATGACCAGA
* ** *
3201926 ATTAAATCATGAGCCT-AAATTTGAAAATGACCA-A
1 ATTAAATCATGAG-TTAAAAAATAAAAATGACCAGA
* ** * * * ** *
3201960 GATTAAACCACAAGTCAAAAAATTAAAACGATAAGG
1 -ATTAAATCATGAGTTAAAAAATAAAAATGACCAGA
* ** * * *
3201996 ATTAAACCACAAGTTAAAGAATGAAAATGA-TAGA
1 ATTAAATCATGAGTTAAAAAATAAAAATGACCAGA
* * ** * * * *
3202030 GATGAAACCACCAGTCAAAAAATGAAAAATGATCTGG
1 -ATTAAATCATGAGTTAAAAAAT-AAAAATGACCAGA
* * * * ** *
3202067 ATTAAACCATGAGTTAGAAAATAAAGA-CAATAGGG
1 ATTAAATCATGAGTTAAAAAATAAAAATGACCA-GA
* * *
3202102 ATTAAACCATGAGTCAGAGAAATAAAAATGACCAGA
1 ATTAAATCATGAGTTA-AAAAATAAAAATGACCAGA
* * ** * * * * * *
3202138 ATCAAAACATGAGCCAGAAAATGAAAACGATCGGG
1 ATTAAATCATGAGTTAAAAAATAAAAATGACCAGA
* *** * * *
3202173 ATTAAATCATGAGTCAAAAAATAAAAGCAATCGGG
1 ATTAAATCATGAGTTAAAAAATAAAAATGACCAGA
*
3202208 ATTAAA-CAATGAGTCAAAAAATAAAAATGACCTAG-
1 ATTAAATC-ATGAGTTAAAAAATAAAAATGACC-AGA
** * * *
3202243 ATTAAATCACAAGTCAAAAAATGAAAATGACCACA
1 ATTAAATCATGAGTTAAAAAATAAAAATGACCAGA
* * * * * ** * *
3202278 ATTAAACCATGGGTCAGAAAATGAAAACAACTAGG
1 ATTAAATCATGAGTTAAAAAATAAAAATGACCAGA
* * * * *
3202313 ATTAAACCATGGGTTAGAAAATGAAAATGA-CTGA
1 ATTAAATCATGAGTTAAAAAATAAAAATGACCAGA
* *
3202347 GATTAAATCATAAGTTAGAAAAT
1 -ATTAAATCATGAGTTAAAAAAT
3202370 GAGAACAATC
Statistics
Matches: 446, Mismatches: 119, Indels: 40
0.74 0.20 0.07
Matches are distributed among these distances:
34 8 0.02
35 355 0.80
36 80 0.18
37 3 0.01
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (35 bp):
ATTAAATCATGAGTTAAAAAATAAAAATGACCAGA
Found at i:3202107 original size:106 final size:104
Alignment explanation
Indices: 3201947--3202349 Score: 335
Period size: 106 Copynumber: 3.8 Consensus size: 104
3201937 AGCCTAAATT
* * ** * * * ** *
3201947 TGAAAATGACCAAGATTAAACCACAAGTCAAAAAATTAAAACGATAAGGATTAAACCACAAGTTA
1 TGAAAATGATCAGGATTAAACCATGAGTCAGAAAA-TAAAACAATAGGGATTAAACCATGAGTCA
* * * * *
3202012 AAGAATGAAAATGATAGAGATGAAACCACCAGTCAAAAAA
65 AAGAATAAAAATGACAGAGATCAAAACACAAGTCAAAAAA
* *
3202052 TGAAAAATGATCTGGATTAAACCATGAGTTAGAAAATAAAGACAATAGGGATTAAACCATGAGTC
1 TG-AAAATGATCAGGATTAAACCATGAGTCAGAAAATAAA-ACAATAGGGATTAAACCATGAGTC
* ** * *
3202117 AGAGAAATAAAAATGACCAGA-ATCAAAACATGAGCCAGAAAA
64 AAAG-AATAAAAATGA-CAGAGATCAAAACACAAGTCAAAAAA
* * * * * *
3202159 TGAAAACGATCGGGATTAAATCATGAGTCAAAAAATAAAAGCAATCGGGATTAAACAATGAGTCA
1 TGAAAATGATCAGGATTAAACCATGAGTCAGAAAATAAAA-CAATAGGGATTAAACCATGAGTCA
* ** * *
3202224 AAAAATAAAAATGACCTAGATTAAATCACAAGTCAAAAAA
65 AAGAATAAAAATGACAGAGATCAAAACACAAGTCAAAAAA
* ** * * *
3202264 TGAAAATGACCACAATTAAACCATGGGTCAGAAAATGAAAACAACTA-GGATTAAACCATGGGTT
1 TGAAAATGATCAGGATTAAACCATGAGTCAGAAAAT-AAAACAA-TAGGGATTAAACCATGAGTC
* *
3202328 AGAA-AATGAAAATGACTGAGAT
64 A-AAGAATAAAAATGACAGAGAT
3202350 TAAATCATAA
Statistics
Matches: 236, Mismatches: 53, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
104 2 0.01
105 94 0.40
106 110 0.47
107 27 0.11
108 3 0.01
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.18
Consensus pattern (104 bp):
TGAAAATGATCAGGATTAAACCATGAGTCAGAAAATAAAACAATAGGGATTAAACCATGAGTCAA
AGAATAAAAATGACAGAGATCAAAACACAAGTCAAAAAA
Found at i:3202299 original size:70 final size:69
Alignment explanation
Indices: 3201590--3203958 Score: 363
Period size: 70 Copynumber: 33.4 Consensus size: 69
3201580 ACGCGAGTTA
* **
3201590 AAAAATGAAAATGACCTAAATTAAATCATAAGTCAAAAAAT-AGAAATGA-CAGGGATTAAA-CA
1 AAAAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGA-AAATGACCA-GGATTAAACCA
**
3201652 ACACGTC
64 TGA-GTC
* * * * **
3201659 AAAAAATGAAAACGA--TAGGGATTAAAGCACGAGACAGAAAATAT-AAAA-CAATAGGGATTAA
1 -AAAAATGAAAATGACCTA--GATTAAATCACGAGTCA-AAAA-ATGAAAATGACCA-GGATTAA
*
3201720 ACCATAAGTC
60 ACCATGAGTC
* * *** * * * * * *
3201730 GAAAAGTGAAAGTGAAGAAGATTAAATGATGAGTCAAAAAATAAAAAGGAAC-GGCATTAAATCA
1 -AAAAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCAGG-ATTAAACCA
3201794 TGAGTC
64 TGAGTC
* * * * *
3201800 AAAAAAATAAAAATGACC-AGAATCAAATCATGAGTTAGAAAATGAAAATGACCAGGATTAAACC
1 --AAAAATGAAAATGACCTAG-ATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAACC
3201864 ACT-AGTC
63 A-TGAGTC
* * * * ** *
3201871 AAGTAATGAAAATGA-CTCGAATTAAATCACGAGTTAAAAAATAAAAATGACCAAAATTAAATCA
1 AA-AAATGAAAATGACCTAG-ATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCA
*
3201935 TGAGCC
64 TGAGTC
** * * * * * ** *
3201941 TAAATTTGAAAATGACCAAGATTAAACCACAAGTCAAAAAATTAAAACGATAAGGATTAAACCAC
1 -AAAAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCAT
* *
3202006 AAGTT
65 GAGTC
*** * * * * *
3202011 AAAGAATGAAAATGATAGAGATGAAACCACCAGTCAAAAAATGAAAAATGATCTGGATTAAACCA
1 AAA-AATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATG-AAAATGACCAGGATTAAACCA
*
3202076 TGAGTT
64 TGAGTC
* * * * * * *
3202082 AGAAAAT--AAA-GACAATAGGGATTAAACCATGAGTCAGAGAAATAAAAATGACCAGAATCAAA
1 A-AAAATGAAAATGAC-CTA--GATTAAATCACGAGTCA-AAAAATGAAAATGACCAGGATTAAA
* *
3202144 ACATGAGCC
61 CCATGAGTC
* * ** * * * *
3202153 AGAAAATGAAAACGATCGGGATTAAATCATGAGTCAAAAAAT-AAAA-GCAATCGGGATTAAACA
1 A-AAAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATG--ACCAGGATTAAACC
3202216 ATGAGTC
63 ATGAGTC
* * **
3202223 AAAAAATAAAAATGACCTAGATTAAATCACAAGTCAAAAAATGAAAATGACCACAATTAAACCAT
1 -AAAAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCAT
*
3202288 GGGTC
65 GAGTC
* * * * * * * * *
3202293 AGAAAATGAAAA-CAACTAGGATTAAACCATGGGTTAGAAAATGAAAATGA-CTGAGATTAAATC
1 A-AAAATGAAAATGACCTA-GATTAAATCACGAGTCAAAAAATGAAAATGACCAG-GATTAAACC
* *
3202356 ATAAGTT
63 ATGAGTC
* ** * * * * ** ** *
3202363 AGAAAATGAGAACAATCAATATTAAATCACAAG-CTAGAGTAAT-AAAAGTGA-TTGAAATTAAA
1 A-AAAATGAAAATGACCTAGATTAAATCACGAGTC-A-AAAAATGAAAA-TGACCAG-GATTAAA
* * *
3202425 TCAAGAGTT
61 CCATGAGTC
* * * * * * * * *
3202434 AGAAAATGAAAACGATCGAGACTAAACCATGAGTTTGAAAATGAAAACAGTAATGAAAATTA-TA
1 A-AAAATGAAAATGACCTAGATTAAATCACGA----G----T-CAAA-A--AATGAAAATGACCA
* ** *
3202498 GGAATTATATTACGAGTC
53 GG-ATTAAACCATGAGTC
* * * * * * *
3202516 TAAAAATGAAAATGACC-AGGATCAGAA-CGCAAGTTAAAAAATGAAAATGACC-GTTATTAAAG
1 AAAAA-TGAAAATGACCTA-GATTA-AATCACGAGTCAAAAAATGAAAATGACCAG-GATTAAAC
**
3202578 CACAAGTC
62 CATGAGTC
* * * * * * ** * *
3202586 AAAAAATGAAAATGA-CTGGGACTAAA-CCCTGACTGAGAAAATGAAAACCACTACGATTAAACC
1 -AAAAATGAAAATGACCT-AGATTAAATCAC-GAGTCAAAAAATGAAAATGACCAGGATTAAACC
3202649 ATGAGTC
63 ATGAGTC
** * * *** *
3202656 AGAAAATGAAAGCGA-TTGAGATTAAA-CGATGAGTCAAAAAATGAAAAATGATTGGGATTAAAT
1 A-AAAATGAAAATGACCT-AGATTAAATC-ACGAGTCAAAAAATG-AAAATGACCAGGATTAAAC
3202719 CA-GAAGTC
62 CATG-AGTC
* *** * * * * * * *
3202727 AAAAAATAAAAATGACAGGGGTTAAA-CAATGCA-TCGAAAAATAAAAATGA-TAGGGATGAAAG
1 -AAAAATGAAAATGACCTAGATTAAATC-ACG-AGTCAAAAAATGAAAATGACCA-GGATTAAAC
*
3202789 CATGAGTT
62 CATGAGTC
* * * ** * * *
3202797 AGAAAATGTAAA--ACAATAGGGGATTAAACCATAAGTCCAAAAGTGAAAATGACCATGATTAAA
1 A-AAAATGAAAATGAC-CTA---GATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAA
*
3202860 CCATGAGTT
61 CCATGAGTC
* * * * * * ** * *
3202869 AGAAAATGAAAACGACCAAAAATAAATGACAAGTCAAAAAATGAAAATGACCAATATTAAATCAC
1 A-AAAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCAT
3202934 GAGTC
65 GAGTC
* * * * * *
3202939 AAAGAAATAAAAATAACCAAAATCAAATCATGAGTC-AAAAATGAAAATGACC-GTGATTAAACC
1 -AA-AAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCAG-GATTAAACC
3203002 ACT-AGTC
63 A-TGAGTC
* * * * ** * * * *
3203009 AAGAAACGAAAATGATCGAAATTAAATCATAAGTCAGAAAATAAAAATGA--ATGAAATTAAATC
1 AA-AAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCA-G-GATTAAACC
*
3203072 ACGAGTC
63 ATGAGTC
* * * * * * *
3203079 TAAAATTGAAAATGACC-AGATTAAACCACGAATTAGAAAATTAAAATGACAAGGATTAAACACA
1 -AAAAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAAC-CA
3203143 --AGTC
64 TGAGTC
* * * * * *** *
3203147 AGAGAATGAAAATGACC-AGGATGAAACCA-GCAGTCAGAAAATGAAAAATAATTGGGATGAAAC
1 A-AAAATGAAAATGACCTA-GATTAAATCACG-AGTCAAAAAATG-AAAATGACCAGGATTAAAC
*
3203210 TA-GCAGTC
62 CATG-AGTC
* ** * * * ** * * ** ***
3203218 AGAATATGAAAAAT-AATTGGGGTTAAACCATAAGTCAGAAAATGAAGACAATGGGGATTAAACC
1 A-AAAATG-AAAATGACCT-AGATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAACC
3203282 ATGAGTC
63 ATGAGTC
* *
3203289 AGAGAAATAAAAATGA-CTAGAATTAAATCACGATTCAGAAAAA-G-AAA--ACCATGGGAATTA
1 A-A-AAATGAAAATGACCTAG-ATTAAATCACGAGTCA-AAAAATGAAAATGACCA--GG-ATTA
* *
3203349 CACCACGAGTC
59 AACCATGAGTC
* * ** * * * ** * *
3203360 AGAAAATGAAAACGATCGGGATTAATTCATGAGTCAAAAAATAAAAACAACCAAGATTAAACCAC
1 A-AAAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCAT
*
3203425 AAGTC
65 GAGTC
* * * * * * ** *
3203430 AAAAAATAAAAATGACCTGGATTAAATCACAAAATTAGAAAATGAAAACAACAAGGATTAAACCA
1 -AAAAATGAAAATGACCTAGATTAAATCAC-GAGTCAAAAAATGAAAATGACCAGGATTAAACCA
*
3203495 TGGGTC
64 TGAGTC
* * * * * * * ** * *
3203501 AAAAATGAAAACGACCAAGATTAAACCATGGGTTATAAAATGAAAATGA-TTGGTATTAAATCAC
1 AAAAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCAGG-ATTAAACCAT
*
3203565 AAG-C
65 GAGTC
** * * * * *
3203569 TAGAGAAACAAAAATGA-TTGAAATTAAATCACAAGTCAGAAAATGAAAATGATC-GAGATTAAA
1 -A-A-AAATGAAAATGACCT-AGATTAAATCACGAGTCAAAAAATGAAAATGACCAG-GATTAAA
**
3203632 CCACAAGTC
61 CCATGAGTC
* * * * *
3203641 AAAAAATGAAAGTGATAATGAAAATTATCAAAATTAAATTATGAGTCAAAAAATGAAAATGACCT
1 -AAAAATG--A---A-AATG------ACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACC-
* * *
3203706 A-GATCAAAACATGAGTT
52 AGGATTAAACCATGAGTC
* * * * * ** ** * * *
3203723 AAAAAGTGAAAATGACCGAAATTAAAGCATGACTCAGGAAATGAAAACAACTAGGACTAAACCCT
1 AAAAA-TGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCAT
* *
3203788 AAGTG
65 GAGTC
** * * * * * * * *
3203793 AGAAAATGAAAACCACCAAGATTGAACCACAAGTCAGAAAATGAAAGTG-TCAGGATTAAACGAT
1 A-AAAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCAT
3203857 GAGTC
65 GAGTC
* ** * * * * * *
3203862 AGGAAATGAAAAACAACTAGGATTATACCATGAGTCAAAAAATGAAAATGACTAGGATTAAATCA
1 A-AAAATGAAAATGACCTA-GATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCA
3203927 TGAGTC
64 TGAGTC
* **
3203933 AAAAAATAAAAATGACAGAGATTAAA
1 -AAAAATGAAAATGACCTAGATTAAA
3203959 CGATAGGGAT
Statistics
Matches: 1675, Mismatches: 472, Indels: 304
0.68 0.19 0.12
Matches are distributed among these distances:
67 1 0.00
68 30 0.02
69 171 0.10
70 743 0.44
71 499 0.30
72 106 0.06
73 14 0.01
74 5 0.00
75 2 0.00
76 8 0.00
77 1 0.00
78 1 0.00
79 1 0.00
80 2 0.00
81 10 0.01
82 75 0.04
83 6 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (69 bp):
AAAAATGAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCATG
AGTC
Found at i:3202370 original size:35 final size:35
Alignment explanation
Indices: 3201828--3203634 Score: 263
Period size: 35 Copynumber: 51.1 Consensus size: 35
3201818 AGAATCAAAT
*
3201828 CATGAGTTAGAAAATGAAAATGAC-CAGGATTAAAC
1 CATGAGTTAGAAAATGAAAATGACTGA-GATTAAAC
* * *
3201863 CACT-AGTCA-AGTAATGAAAATGACTCGA-ATTAAAT
1 CA-TGAGTTAGA-AAATGAAAATGACT-GAGATTAAAC
* * * ** * *
3201898 CACGAGTTAAAAAATAAAAATGACCAAAATTAAAT
1 CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
* ** **
3201933 CATGAGCCTA-AATTTGAAAATGACCAAGATTAAAC
1 CATGAG-TTAGAAAATGAAAATGACTGAGATTAAAC
** * * * * *
3201968 CACAAGTCAAAAAATTAAAACGA-TAAGGATTAAAC
1 CATGAGTTAGAAAATGAAAATGACTGA-GATTAAAC
** *
3202003 CACAAGTTA-AAGAATGAAAATGA-TAGAGATGAAAC
1 CATGAGTTAGAA-AATGAAAATGACT-GAGATTAAAC
** * *
3202038 CACCAGTCAAAAAATGAAAAATGATCTG-GATTAAAC
1 CATGAGTTAGAAAATG-AAAATGA-CTGAGATTAAAC
*
3202074 CATGAGTTAGAAAAT--AAA-GACAATAGGGATTAAAC
1 CATGAGTTAGAAAATGAAAATGAC--T-GAGATTAAAC
* * * * *
3202109 CATGAGTCAGAGAAATAAAAATGAC-CAGAATCAAAA
1 CATGAGTTAGA-AAATGAAAATGACTGAG-ATTAAAC
** * * *
3202145 CATGAGCCAGAAAATGAAAACGA-TCGGGATTAAAT
1 CATGAGTTAGAAAATGAAAATGACT-GAGATTAAAC
* * * *
3202180 CATGAGTCAAAAAAT-AAAA-GCAATCGGGATTAAAC
1 CATGAGTTAGAAAATGAAAATG-ACT-GAGATTAAAC
* * * * *
3202215 AATGAGTCAAAAAATAAAAATGACCT-AGATTAAAT
1 CATGAGTTAGAAAATGAAAATGA-CTGAGATTAAAC
** * * * *
3202250 CACAAGTCAAAAAATGAAAATGAC-CACAATTAAAC
1 CATGAGTTAGAAAATGAAAATGACTGA-GATTAAAC
* * **
3202285 CATGGGTCAGAAAATGAAAACAACT-AGGATTAAAC
1 CATGAGTTAGAAAATGAAAATGACTGA-GATTAAAC
* *
3202320 CATGGGTTAGAAAATGAAAATGACTGAGATTAAAT
1 CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
* * * * * * *
3202355 CATAAGTTAGAAAATGAGAA-CAATCAATATTAAAT
1 CATGAGTTAGAAAATGAAAATGACT-GAGATTAAAC
** * * * * *
3202390 CACAAGCTAGAGTAAT-AAAAGTGATTGAAATTAAAT
1 CATGAGTTAGA-AAATGAAAA-TGACTGAGATTAAAC
* * *
3202426 CAAGAGTTAGAAAATGAAAACGA-TCGAGACTAAAC
1 CATGAGTTAGAAAATGAAAATGACT-GAGATTAAAC
* * * * *
3202461 CATGAGTTTGAAAATGAAAACAGTAATGAAAATTATAGGAATTA
1 CATGAGTTAGAAAATGAAAA-TG-ACTG-AGA-T-TA--AA--C
* * *
3202505 TATTACGAGTCTA-AAAATGAAAATGAC-CAGGATCAGAAC
1 CA-T--GAGT-TAGAAAATGAAAATGACTGA-GATTA-AAC
* * ** *
3202544 GCA--AGTTAAAAAATGAAAATGACCGTTATTAAAG
1 -CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
** * * * *
3202578 CACAAGTCAAAAAATGAAAATGACTGGGACTAAAC
1 CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
* * * **
3202613 CCTGACTGAGAAAATGAAAACCACT-ACGATTAAAC
1 CATGAGTTAGAAAATGAAAATGACTGA-GATTAAAC
* ** *
3202648 CATGAGTCAGAAAATGAAAGCGATTGAGATTAAAC
1 CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
* * * * * *
3202683 GATGAGTCAAAAAATGAAAAATGATTGGGATTAAAT
1 CATGAGTTAGAAAATG-AAAATGACTGAGATTAAAC
* * * * * *
3202719 CA-GAAGTCAAAAAATAAAAATGACAGGGGTTAAAC
1 CATG-AGTTAGAAAATGAAAATGACTGAGATTAAAC
* * * * * *
3202754 AATGCA--TCGAAAAATAAAAATGA-TAGGGATGAAAG
1 CATG-AGTTAG-AAAATGAAAATGACT-GAGATTAAAC
* * *
3202789 CATGAGTTAGAAAATGTAAAA-CAATAGGGGATTAAAC
1 CATGAGTTAGAAAATG-AAAATGACT--GAGATTAAAC
* * * *
3202826 CATAAGTCCA-AAAGTGAAAATGAC-CATGATTAAAC
1 CATGAGT-TAGAAAATGAAAATGACTGA-GATTAAAC
* ** * * *
3202861 CATGAGTTAGAAAATGAAAACGACCAAAAATAAAT
1 CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
* ** * * ** * *
3202896 GACAAGTCAAAAAATGAAAATGACCAATATTAAAT
1 CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
* * * * * ** * * *
3202931 CACGAGTCAAAGAAATAAAAATAACCAAAATCAAAT
1 CATGAGTTAGA-AAATGAAAATGACTGAGATTAAAC
* * *
3202967 CATGAGTCA-AAAATGAAAATGACCGTGATTAAAC
1 CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
* * * *
3203001 CACT-AGTCA-AGAAACGAAAATGA-TCGAAATTAAAT
1 CA-TGAGTTAGA-AAATGAAAATGACT-GAGATTAAAC
* * * * * *
3203036 CATAAGTCAGAAAATAAAAATGAATGAAATTAAAT
1 CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
* * *
3203071 CACGAGTCTA-AAATTGAAAATGAC-CAGATTAAAC
1 CATGAGT-TAGAAAATGAAAATGACTGAGATTAAAC
* * * *
3203105 CACGAATTAGAAAATTAAAATGAC-AAGGATTAAAC
1 CATGAGTTAGAAAATGAAAATGACTGA-GATTAAAC
* * * *
3203140 ACA--AGTCAGAGAATGAAAATGAC-CAGGATGAAAC
1 -CATGAGTTAGAAAATGAAAATGACTGA-GATTAAAC
* * * * *
3203174 CA-GCAGTCAGAAAATGAAAAATAATTGGGATGAAAC
1 CATG-AGTTAGAAAATG-AAAATGACTGAGATTAAAC
* * * * * * *
3203210 TA-GCAGTCAGAATATGAAAAATAATTGGGGTTAAAC
1 CATG-AGTTAGAAAATG-AAAATGACTGAGATTAAAC
* * * * * *
3203246 CATAAGTCAGAAAATGAAGA-CAATGGGGATTAAAC
1 CATGAGTTAGAAAATGAAAATGACT-GAGATTAAAC
* * *
3203281 CATGAGTCAGAGAAATAAAAATGACT-AGAATTAAAT
1 CATGAGTTAGA-AAATGAAAATGACTGAG-ATTAAAC
* * ** * *
3203317 CACGA-TTCAGAAAAAGAAAACCA-TGGGAATTACAC
1 CATGAGTT-AGAAAATGAAAATGACTGAG-ATTAAAC
* * * * **
3203352 CACGAGTCAGAAAATGAAAACGA-TCGGGATTAATT
1 CATGAGTTAGAAAATGAAAATGACT-GAGATTAAAC
* * * ** **
3203387 CATGAGTCAAAAAATAAAAACAACCAAGATTAAAC
1 CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
** * * *
3203422 CACAAGTCAAAAAATAAAAATGACCTG-GATTAAATC
1 CATGAGTTAGAAAATGAAAATGA-CTGAGATTAAA-C
* * ** *
3203458 ACA-AAATTAGAAAATGAAAACAAC-AAGGATTAAAC
1 -CATGAGTTAGAAAATGAAAATGACTGA-GATTAAAC
* * * **
3203493 CATGGGTCA-AAAATGAAAACGACCAAGATTAAAC
1 CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
* * * *
3203527 CATGGGTTATAAAATGAAAATGATTG-GTATTAAAT
1 CATGAGTTAGAAAATGAAAATGACTGAG-ATTAAAC
** * ** * * *
3203562 CACAAGCTAGAGAAACAAAAATGATTGAAATTAAAT
1 CATGAGTTAGA-AAATGAAAATGACTGAGATTAAAC
** *
3203598 CACAAGTCAGAAAATGAAAATGA-TCGAGATTAAAC
1 CATGAGTTAGAAAATGAAAATGACT-GAGATTAAAC
3203633 CA
1 CA
3203635 CAAGTCAAAA
Statistics
Matches: 1340, Mismatches: 316, Indels: 232
0.71 0.17 0.12
Matches are distributed among these distances:
31 1 0.00
32 2 0.00
33 11 0.01
34 137 0.10
35 824 0.61
36 291 0.22
37 32 0.02
38 8 0.01
39 3 0.00
40 3 0.00
41 3 0.00
42 3 0.00
43 2 0.00
44 2 0.00
45 2 0.00
46 1 0.00
47 14 0.01
48 1 0.00
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.19
Consensus pattern (35 bp):
CATGAGTTAGAAAATGAAAATGACTGAGATTAAAC
Done.