Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 26 of 93
Found at i:3203315 original size:71 final size:70
Alignment explanation
Indices: 3203240--3203371 Score: 156
Period size: 71 Copynumber: 1.9 Consensus size: 70
3203230 ATAATTGGGG
* * * * *
3203240 TTAAACCATAAGTCAGAAAATGAAGACAATGGGGATTAAACCATGAGTCAGAGAAATAAAAATGA
1 TTAAACCACAAGTCAGAAAAAGAAAACAATGGGAATTAAACCACGAGTCAGA-AAATAAAAATGA
3203305 CTAGAA
65 CTAGAA
* * * * * *
3203311 TTAAATCACGATTCAGAAAAAGAAAACCATGGGAATTACACCACGAGTCAGAAAATGAAAA
1 TTAAACCACAAGTCAGAAAAAGAAAACAATGGGAATTAAACCACGAGTCAGAAAATAAAAA
3203372 CGATCGGGAT
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
70 8 0.16
71 42 0.84
ACGTcount: A:0.51, C:0.14, G:0.18, T:0.17
Consensus pattern (70 bp):
TTAAACCACAAGTCAGAAAAAGAAAACAATGGGAATTAAACCACGAGTCAGAAAATAAAAATGAC
TAGAA
Found at i:3203511 original size:34 final size:35
Alignment explanation
Indices: 3203468--3203546 Score: 117
Period size: 34 Copynumber: 2.3 Consensus size: 35
3203458 ACAAAATTAG
3203468 AAAATGAAAAC-AACAAGGATTAAACCATGGGTCA-
1 AAAATGAAAACGAACAA-GATTAAACCATGGGTCAT
* *
3203502 AAAATGAAAACGACCAAGATTAAACCATGGGTTAT
1 AAAATGAAAACGAACAAGATTAAACCATGGGTCAT
3203537 AAAATGAAAA
1 AAAATGAAAA
3203547 TGATTGGTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
34 27 0.66
35 14 0.34
ACGTcount: A:0.54, C:0.13, G:0.16, T:0.16
Consensus pattern (35 bp):
AAAATGAAAACGAACAAGATTAAACCATGGGTCAT
Found at i:3203637 original size:35 final size:35
Alignment explanation
Indices: 3202553--3203656 Score: 282
Period size: 35 Copynumber: 31.4 Consensus size: 35
3202543 CGCAAGTTAA
* ** * *
3202553 AAAATGAAAATGACCGTTATTAAAGCACAAGTCAA
1 AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
* * * * *
3202588 AAAATGAAAATGA-CTGGGACTAAACC-CTGACTGAG
1 AAAATGAAAATGATC-GAGATTAAACCAC-AAGTCAG
** * **
3202623 AAAATGAAAACCA-CTACGATTAAACCATGAGTCAG
1 AAAATGAAAATGATCGA-GATTAAACCACAAGTCAG
** * * ** *
3202658 AAAATGAAAGCGATTGAGATTAAACGATGAGTCAA
1 AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
* * * * *
3202693 AAAATGAAAAATGATTGGGATTAAATCAGAAGTCAA
1 AAAATG-AAAATGATCGAGATTAAACCACAAGTCAG
* * * *
3202729 AAAATAAAAATGA-CAGGGGTTAAA-CA-ATG-CATCG
1 AAAATGAAAATGATC-GAGATTAAACCACAAGTCA--G
* * * * * ** *
3202763 AAAAATAAAAATGATAGGGATGAAAGCATGAGTTAG
1 -AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
** * * *
3202799 AAAATGTAAAACAATAGGGGATTAAACCATAAGTCCA-
1 AAAATG-AAAATGAT-CGAGATTAAACCACAAGT-CAG
* * ** *
3202836 AAAGTGAAAATGA-CCATGATTAAACCATGAGTTAG
1 AAAATGAAAATGATCGA-GATTAAACCACAAGTCAG
* * * * * ** *
3202871 AAAATGAAAACGACCAAAAATAAATGACAAGTCAA
1 AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
* * * * * *
3202906 AAAATGAAAATGACCAATATTAAATCACGAGTCAA
1 AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
* * * * * * * **
3202941 AGAAATAAAAATAACCAAAATCAAATCATGAGTCA-
1 A-AAATGAAAATGATCGAGATTAAACCACAAGTCAG
* * *
3202976 AAAATGAAAATGACCGTGATTAAACCACTAGTCA-
1 AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
* * * *
3203010 AGAAACGAAAATGATCGAAATTAAATCATAAGTCAG
1 A-AAATGAAAATGATCGAGATTAAACCACAAGTCAG
* * * *
3203046 AAAATAAAAATGAAT-GAAATTAAATCACGAGTCTA-
1 AAAATGAAAATG-ATCGAGATTAAACCACAAGTC-AG
* * *
3203081 AAATTGAAAATGA-CCAGATTAAACCACGAA-TTAG
1 AAAATGAAAATGATCGAGATTAAACCAC-AAGTCAG
* *
3203115 AAAATTAAAATGA-CAAGGATTAAA-CACAAGTCAG
1 AAAATGAAAATGATCGA-GATTAAACCACAAGTCAG
* * *
3203149 AGAATGAAAATGA-CCAGGATGAAACCAGC-AGTCAG
1 AAAATGAAAATGATCGA-GATTAAACCA-CAAGTCAG
* * * * *
3203184 AAAATGAAAAATAATTGGGATGAAACTAGC-AGTCAG
1 AAAATG-AAAATGATCGAGATTAAACCA-CAAGTCAG
* * * * * *
3203220 AATATGAAAAATAATTGGGGTTAAACCATAAGTCAG
1 AAAATG-AAAATGATCGAGATTAAACCACAAGTCAG
* ** * * **
3203256 AAAATGAAGACAATGGGGATTAAACCATGAGTCAG
1 AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
* * * * *
3203291 AGAAATAAAAATGA-CTAGAATTAAATCACGATTCAG
1 A-AAATGAAAATGATCGAG-ATTAAACCACAAGTCAG
* ** * * *
3203327 AAAAAGAAAACCAT-GGGAATTACACCACGAGTCAG
1 AAAATGAAAATGATCGAG-ATTAAACCACAAGTCAG
* * ** ** *
3203362 AAAATGAAAACGATCGGGATTAATTCATGAGTCAA
1 AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
* ** * * *
3203397 AAAATAAAAACAACCAAGATTAAACCACAAGTCAA
1 AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
* * * * *
3203432 AAAATAAAAATGACCTG-GATTAAATCACAAAATTAG
1 AAAATGAAAATGATC-GAGATTAAACCAC-AAGTCAG
* * * ***
3203468 AAAATGAAAA-CAACAAGGATTAAACCATGGGTCA-
1 AAAATGAAAATGATCGA-GATTAAACCACAAGTCAG
* * * *** * *
3203502 AAAATGAAAACGACCAAGATTAAACCATGGGTTAT
1 AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
* *
3203537 AAAATGAAAATGATTG-GTATTAAATCACAAG-CTAG
1 AAAATGAAAATGATCGAG-ATTAAACCACAAGTC-AG
** * * *
3203572 AGAAACAAAAATGATTGAAATTAAATCACAAGTCAG
1 A-AAATGAAAATGATCGAGATTAAACCACAAGTCAG
*
3203608 AAAATGAAAATGATCGAGATTAAACCACAAGTCAA
1 AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
*
3203643 AAAATGAAAGTGAT
1 AAAATGAAAATGAT
3203657 AATGAAAATT
Statistics
Matches: 815, Mismatches: 204, Indels: 100
0.73 0.18 0.09
Matches are distributed among these distances:
32 2 0.00
33 5 0.01
34 108 0.13
35 465 0.57
36 212 0.26
37 21 0.03
38 2 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (35 bp):
AAAATGAAAATGATCGAGATTAAACCACAAGTCAG
Found at i:3203754 original size:35 final size:35
Alignment explanation
Indices: 3203657--3203769 Score: 100
Period size: 35 Copynumber: 3.2 Consensus size: 35
3203647 TGAAAGTGAT
* * * **
3203657 AATGAAAATTATCAAAATTAAATTATGAGTCAAAA
1 AATGAAAATGACCGAAATTAAAACATGAGTCAAAA
* * * *
3203692 AATGAAAATGACCTAGATCAAAACATGAGTTAAAA
1 AATGAAAATGACCGAAATTAAAACATGAGTCAAAA
* * * **
3203727 AGTGAAAATGACCGAAATTAAAGCATGACTCAGGA
1 AATGAAAATGACCGAAATTAAAACATGAGTCAAAA
3203762 AATGAAAA
1 AATGAAAA
3203770 CAACTAGGAC
Statistics
Matches: 60, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
35 60 1.00
ACGTcount: A:0.54, C:0.10, G:0.15, T:0.21
Consensus pattern (35 bp):
AATGAAAATGACCGAAATTAAAACATGAGTCAAAA
Found at i:3203929 original size:35 final size:35
Alignment explanation
Indices: 3203681--3204439 Score: 180
Period size: 35 Copynumber: 21.2 Consensus size: 35
3203671 AAATTAAATT
* *
3203681 ATGAGTCAAAAAATGAAAATGACCTA-GATCAAAAC
1 ATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACC
* * * * *
3203716 ATGAGTTAAAAAGTGAAAATGAC-CGAAATTAAAGC
1 ATGAGTCAAAAAATGAAAATGACTAG-GATTAAACC
* ** ** *
3203751 ATGACTCAGGAAATGAAAACAACTAGGACTAAACC
1 ATGAGTCAAAAAATGAAAATGACTAGGATTAAACC
* * * * ** * * *
3203786 CTAAGTGAGAAAATGAAAACCACCAAGATTGAACC
1 ATGAGTCAAAAAATGAAAATGACTAGGATTAAACC
** * * * *
3203821 ACAAGTCAGAAAATGAAAGTGTC-AGGATTAAACG
1 ATGAGTCAAAAAATGAAAATGACTAGGATTAAACC
** ** *
3203855 ATGAGTCAGGAAATGAAAAACAACTAGGATTATACC
1 ATGAGTCAAAAAATG-AAAATGACTAGGATTAAACC
*
3203891 ATGAGTCAAAAAATGAAAATGACTAGGATTAAATC
1 ATGAGTCAAAAAATGAAAATGACTAGGATTAAACC
* *
3203926 ATGAGTCAAAAAATAAAAATGAC-AGAGATTAAACG
1 ATGAGTCAAAAAATGAAAATGACTAG-GATTAAACC
* * * *
3203961 ATAGGGATTAAAGCATGAGTTAGAAAATGTAAAACAATGGGATTAAACC
1 AT-GAG-TCAAA--A--A-AT-GAAAATG----AC--TAGGATTAAACC
** * * * *
3204010 ACAAGTTAAAAAGTGAAAAT-AATTGAGATTAAACC
1 ATGAGTCAAAAAATGAAAATGACTAG-GATTAAACC
* * ** * * **
3204045 ATGAGTCAGAAAATTAAAGCGA-TCGAAATTAAATG
1 ATGAGTCAAAAAATGAAAATGACTAG-GATTAAACC
* ** * * *
3204080 ACGTTTCAAAAAATAAAAATGA-TCGGTATTAAATC
1 ATGAGTCAAAAAATGAAAATGACTAGG-ATTAAACC
* * ** * *
3204115 ATGAGTTAAAGAAAT-AAAAGTGACCAAAATGAAATC
1 ATGAGTCAAA-AAATGAAAA-TGACTAGGATTAAACC
* * *
3204151 ATGAGTTAGAAAATGAAAATGACCAGGATTAAACC
1 ATGAGTCAAAAAATGAAAATGACTAGGATTAAACC
* * ** * *
3204186 ACT-AGTTAAGAAACAAAAATGA-TCAGAATTAAATC
1 A-TGAGTCAAAAAATGAAAATGACT-AGGATTAAACC
* * * * * **
3204221 ATGAGTTAGAAAATAAAAATGAC-CGAAATTAAATT
1 ATGAGTCAAAAAATGAAAATGACTAG-GATTAAACC
* * *
3204256 ATGAGTCTAAAATTAAAAATGA-TCAGGATTAAACC
1 ATGAGTCAAAAAATGAAAATGACT-AGGATTAAACC
* * * *
3204291 ACGAGTTAGAAAATTAAAATGA-TAAGGATTAAACC
1 ATGAGTCAAAAAATGAAAATGACT-AGGATTAAACC
* * * * * * *
3204326 ACGAGTTAGAGAATGAAAATGACCAAGATAAAACC
1 ATGAGTCAAAAAATGAAAATGACTAGGATTAAACC
** * *
3204361 ACCAGTCAAAAAATAAAAAATGA-TCGGGATTAAACC
1 ATGAGTCAAAAAAT-GAAAATGACT-AGGATTAAACC
* * * * * *
3204397 ACGAGTCTAAAAAT-AAAGTCAATGGGGATTAAACC
1 ATGAGTCAAAAAATGAAAATGACT-AGGATTAAACC
3204432 ATGAGTCA
1 ATGAGTCA
3204440 GAGAAATAAA
Statistics
Matches: 535, Mismatches: 150, Indels: 78
0.70 0.20 0.10
Matches are distributed among these distances:
34 32 0.06
35 380 0.71
36 83 0.16
37 4 0.01
39 1 0.00
41 7 0.01
42 2 0.00
43 7 0.01
45 1 0.00
47 7 0.01
48 1 0.00
49 9 0.02
50 1 0.00
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (35 bp):
ATGAGTCAAAAAATGAAAATGACTAGGATTAAACC
Found at i:3204076 original size:119 final size:120
Alignment explanation
Indices: 3203845--3204077 Score: 258
Period size: 119 Copynumber: 1.9 Consensus size: 120
3203835 GAAAGTGTCA
* * **
3203845 GGATTAAACGATGAGTCAGGAAATGAAAAACAACTAGGATTATACCATGAGTCAAAAAATGAAAA
1 GGATTAAACGATGAGTCAGAAAATGAAAAACAACTAGGATTAAACCACAAGTCAAAAAATGAAAA
* * * *
3203910 TGACTAGGATTAAATCATGAGTCAAAAAATAAAAATGACAGAGATTAAACGATAG
66 TAACTAGGATTAAACCATGAGTCAAAAAATAAAAACGACAGAAATTAAACGATAG
* * * * *
3203965 GGATTAAA-GCATGAGTTAGAAAATGTAAAACAA-TGGGATTAAACCACAAGTTAAAAAGTGAAA
1 GGATTAAACG-ATGAGTCAGAAAATGAAAAACAACTAGGATTAAACCACAAGTCAAAAAATGAAA
* * * *
3204028 ATAA-TTGAGATTAAACCATGAGTCAGAAAATTAAAGCGATC-GAAATTAAA
65 ATAACTAG-GATTAAACCATGAGTCAAAAAATAAAAACGA-CAGAAATTAAA
3204078 TGACGTTTCA
Statistics
Matches: 93, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
118 2 0.02
119 62 0.67
120 29 0.31
ACGTcount: A:0.51, C:0.09, G:0.19, T:0.21
Consensus pattern (120 bp):
GGATTAAACGATGAGTCAGAAAATGAAAAACAACTAGGATTAAACCACAAGTCAAAAAATGAAAA
TAACTAGGATTAAACCATGAGTCAAAAAATAAAAACGACAGAAATTAAACGATAG
Found at i:3204233 original size:70 final size:70
Alignment explanation
Indices: 3204089--3204413 Score: 234
Period size: 70 Copynumber: 4.6 Consensus size: 70
3204079 GACGTTTCAA
* * * * * *
3204089 AAAATAAAAATGATC-GGTATTAAATCA-TGAGTTAAAGAAATAAAAGTGACCAAAATGAAATCA
1 AAAATAAAAATGACCAGG-ATTAAACCACT-AGTT-AAGAAATAAAAATGATCAGAATTAAATCA
3204152 TGAGTTAG
63 TGAGTTAG
* *
3204160 AAAATGAAAATGACCAGGATTAAACCACTAGTTAAGAAACAAAAATGATCAGAATTAAATCATGA
1 AAAATAAAAATGACCAGGATTAAACCACTAGTTAAGAAATAAAAATGATCAGAATTAAATCATGA
3204225 GTTAG
66 GTTAG
* ** * * *
3204230 AAAATAAAAATGACC-GAAATTAAATTA-TGAGTCTAA-AATTAAAAATGATCAGGATTAAACCA
1 AAAATAAAAATGACCAG-GATTAAACCACT-AGT-TAAGAAATAAAAATGATCAGAATTAAATCA
*
3204292 CGAGTTAG
63 TGAGTTAG
* ** * * * * * *
3204300 AAAATTAAAATGATAAGGATTAAACCACGAGTT-AGAGAATGAAAATGACCA-AGATAAAACCAC
1 AAAATAAAAATGACCAGGATTAAACCACTAGTTAAGA-AATAAAAATGATCAGA-ATTAAATCAT
* * *
3204363 CAGTCAA
64 GAGTTAG
* * *
3204370 AAAATAAAAAATGATCGGGATTAAACCACGAGTCTAA-AAATAAA
1 AAAAT-AAAAATGACCAGGATTAAACCACTAGT-TAAGAAATAAA
3204414 GTCAATGGGG
Statistics
Matches: 205, Mismatches: 36, Indels: 26
0.77 0.13 0.10
Matches are distributed among these distances:
68 1 0.00
69 4 0.02
70 136 0.66
71 58 0.28
72 5 0.02
73 1 0.00
ACGTcount: A:0.53, C:0.11, G:0.15, T:0.21
Consensus pattern (70 bp):
AAAATAAAAATGACCAGGATTAAACCACTAGTTAAGAAATAAAAATGATCAGAATTAAATCATGA
GTTAG
Found at i:3204284 original size:105 final size:102
Alignment explanation
Indices: 3204094--3204402 Score: 314
Period size: 105 Copynumber: 2.9 Consensus size: 102
3204084 TTCAAAAAAT
* * * * *
3204094 AAAAATGATCGGTATTAAATCATGAGTTAAAGAAATAAAAGTGACCAAAATGAAATCATGAGT-T
1 AAAAATGATCAGAATTAAATCATGAGTTAGA-AAATAAAAATGACC-AAATAAAATCATGAGTCT
* * * *
3204158 AGAAAATGAAAATGACCAGGATTAAACCACTAGTTAAGAAA
64 A-AAATTAAAAATGATCAGGATTAAACCACGAGTT-AGAAA
* *
3204199 CAAAAATGATCAGAATTAAATCATGAGTTAGAAAATAAAAATGACCGAAATTAAATTATGAGTCT
1 -AAAAATGATCAGAATTAAATCATGAGTTAGAAAATAAAAATGACC-AAATAAAATCATGAGTCT
3204264 AAAATTAAAAATGATCAGGATTAAACCACGAGTTAGAAA
64 AAAATTAAAAATGATCAGGATTAAACCACGAGTTAGAAA
* * * * * * * **
3204303 ATTAAAATGATAAGGATTAAACCACGAGTTAGAGAATGAAAATGACCAAGATAAAACCACCAGTC
1 A--AAAATGATCAGAATTAAATCATGAGTTAGAAAATAAAAATGACCAA-ATAAAATCATGAGTC
* * *
3204368 AAAAAATAAAAAATGATCGGGATTAAACCACGAGT
63 -TAAAATTAAAAATGATCAGGATTAAACCACGAGT
3204403 CTAAAAATAA
Statistics
Matches: 173, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
103 1 0.01
104 7 0.04
105 104 0.60
106 61 0.35
ACGTcount: A:0.51, C:0.11, G:0.16, T:0.21
Consensus pattern (102 bp):
AAAAATGATCAGAATTAAATCATGAGTTAGAAAATAAAAATGACCAAATAAAATCATGAGTCTAA
AATTAAAAATGATCAGGATTAAACCACGAGTTAGAAA
Found at i:3204396 original size:36 final size:35
Alignment explanation
Indices: 3204085--3204413 Score: 212
Period size: 35 Copynumber: 9.3 Consensus size: 35
3204075 AAATGACGTT
* *
3204085 TCAAAAAATAAAAATGATC-GGTATTAAATCATGAG
1 TCAAAAAATAAAAATGATCAGG-ATTAAACCACGAG
* * * ** * * *
3204120 TTAAAGAAATAAAAGTGACCAAAATGAAATCATGAG
1 TCAAA-AAATAAAAATGATCAGGATTAAACCACGAG
* * * * *
3204156 TTAGAAAATGAAAATGACCAGGATTAAACCACTAG
1 TCAAAAAATAAAAATGATCAGGATTAAACCACGAG
* * * * * *
3204191 TTAAGAAACAAAAATGATCAGAATTAAATCATGAG
1 TCAAAAAATAAAAATGATCAGGATTAAACCACGAG
* * * * ** *
3204226 TTAGAAAATAAAAATGA-CCGAAATTAAATTATGAG
1 TCAAAAAATAAAAATGATCAG-GATTAAACCACGAG
* *
3204261 TCTAAAATTAAAAATGATCAGGATTAAACCACGAG
1 TCAAAAAATAAAAATGATCAGGATTAAACCACGAG
* * * *
3204296 TTAGAAAATTAAAATGATAAGGATTAAACCACGAG
1 TCAAAAAATAAAAATGATCAGGATTAAACCACGAG
* * * * * * * *
3204331 TTAGAGAATGAAAATGACCAAGATAAAACCACCAG
1 TCAAAAAATAAAAATGATCAGGATTAAACCACGAG
*
3204366 TCAAAAAATAAAAAATGATCGGGATTAAACCACGAG
1 TCAAAAAAT-AAAAATGATCAGGATTAAACCACGAG
*
3204402 TCTAAAAATAAA
1 TCAAAAAATAAA
3204414 GTCAATGGGG
Statistics
Matches: 228, Mismatches: 61, Indels: 10
0.76 0.20 0.03
Matches are distributed among these distances:
34 2 0.01
35 168 0.74
36 58 0.25
ACGTcount: A:0.53, C:0.11, G:0.15, T:0.21
Consensus pattern (35 bp):
TCAAAAAATAAAAATGATCAGGATTAAACCACGAG
Found at i:3204426 original size:106 final size:107
Alignment explanation
Indices: 3204264--3204475 Score: 261
Period size: 106 Copynumber: 2.0 Consensus size: 107
3204254 TTATGAGTCT
* *
3204264 AAAATTAAAAATGATCAGGATTAAACCACGAGTTAGAAAATTAAAATGATAAGGATTAAACCACG
1 AAAATAAAAAATGATCAGGATTAAACCACGAGTTAGAAAATTAAAATAATAAGGATTAAACCACG
* * * *
3204329 AGTTAGAG-AATGAAAATGACCAAGATA-AAACCACCAGTCAA
66 AGTCAGAGAAATAAAAATAACC-AGATATAAACCACAAGTCAA
* * **
3204370 AAAATAAAAAATGATCGGGATTAAACCACGAGTCTA-AAAA-TAAAGTCAATGGGGATTAAACCA
1 AAAATAAAAAATGATCAGGATTAAACCACGAGT-TAGAAAATTAAAAT-AATAAGGATTAAACCA
* *
3204433 TGAGTCAGAGAAATAAAAATAACCAGATATAAATCACAAGTCA
64 CGAGTCAGAGAAATAAAAATAACCAGATATAAACCACAAGTCA
3204476 GGGATTAAAC
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
105 5 0.06
106 61 0.68
107 24 0.27
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (107 bp):
AAAATAAAAAATGATCAGGATTAAACCACGAGTTAGAAAATTAAAATAATAAGGATTAAACCACG
AGTCAGAGAAATAAAAATAACCAGATATAAACCACAAGTCAA
Found at i:3204585 original size:34 final size:35
Alignment explanation
Indices: 3204547--3204655 Score: 114
Period size: 35 Copynumber: 3.1 Consensus size: 35
3204537 AAACGACTGG
*
3204547 GATTAAATCACAAGTTAGAAAAT-AAAATGACCGA
1 GATTAAATCACAAGTTAGAAAATAAAAATGATCGA
* * * *
3204581 GATTAAATCACGAGTCAGAGAATAAAAATGATCTA
1 GATTAAATCACAAGTTAGAAAATAAAAATGATCGA
** * *
3204616 G-TTCAAATCTTAAGTTAGAAAATGAAAATGATCGG
1 GATT-AAATCACAAGTTAGAAAATAAAAATGATCGA
3204651 GATTA
1 GATTA
3204656 GACCATTGGT
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
34 22 0.37
35 35 0.59
36 2 0.03
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.25
Consensus pattern (35 bp):
GATTAAATCACAAGTTAGAAAATAAAAATGATCGA
Found at i:3204673 original size:35 final size:35
Alignment explanation
Indices: 3204650--3204727 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 35
3204640 AAAATGATCG
* *
3204650 GGATTAGACCATTGGTCAAAAAATGAAAACGACTA
1 GGATTAAACCATGGGTCAAAAAATGAAAACGACTA
* * *
3204685 GGATTAAACCATGGGTTAGAAAATGAAAACGACCA
1 GGATTAAACCATGGGTCAAAAAATGAAAACGACTA
*
3204720 AGATTAAA
1 GGATTAAA
3204728 TCACGATTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (35 bp):
GGATTAAACCATGGGTCAAAAAATGAAAACGACTA
Found at i:3204739 original size:35 final size:35
Alignment explanation
Indices: 3204669--3204749 Score: 108
Period size: 35 Copynumber: 2.3 Consensus size: 35
3204659 CATTGGTCAA
* * * *
3204669 AAAATGAAAACGACTAGGATTAAACCATGGGTTAG
1 AAAATGAAAACGACCAAGATTAAACCACGAGTTAG
* *
3204704 AAAATGAAAACGACCAAGATTAAATCACGATTTAG
1 AAAATGAAAACGACCAAGATTAAACCACGAGTTAG
3204739 AAAATGAAAAC
1 AAAATGAAAAC
3204750 AATAAAAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (35 bp):
AAAATGAAAACGACCAAGATTAAACCACGAGTTAG
Found at i:3204805 original size:79 final size:81
Alignment explanation
Indices: 3204720--3204876 Score: 221
Period size: 82 Copynumber: 2.0 Consensus size: 81
3204710 AAAACGACCA
* * *
3204720 AGATTAAATCACGATTTAGAAAATGAAAACAAT-A-AAAATTAT-CAAAATTAAATTATGAGTCA
1 AGATTAAATCACGAGTCAGAAAATGAAAACAATAAGAAAATT-TCCAAAATTAAATTACGAGTCA
3204782 AAAAATGAAAATGGTCG
65 AAAAATGAAAATGGTCG
* * *
3204799 AGATTAAATCACGAGTCAGAAAATGAAAATAATAATGAAAATTTCCAGAATTAAATTACGAGTTA
1 AGATTAAATCACGAGTCAGAAAATGAAAACAATAA-GAAAATTTCCAAAATTAAATTACGAGTCA
3204864 AAAAATGAAAATG
65 AAAAATGAAAATG
3204877 ACTGGATCAA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
79 30 0.44
80 1 0.01
81 1 0.01
82 36 0.53
ACGTcount: A:0.54, C:0.08, G:0.13, T:0.25
Consensus pattern (81 bp):
AGATTAAATCACGAGTCAGAAAATGAAAACAATAAGAAAATTTCCAAAATTAAATTACGAGTCAA
AAAATGAAAATGGTCG
Found at i:3204838 original size:47 final size:47
Alignment explanation
Indices: 3204785--3204875 Score: 121
Period size: 47 Copynumber: 1.9 Consensus size: 47
3204775 TGAGTCAAAA
* *
3204785 AATGAAAATGGTCGAG-ATTAAATCACGAGTCAGAAAATGAAAATAAT
1 AATGAAAAT-GTCCAGAATTAAATCACGAGTCAAAAAATGAAAATAAT
* * *
3204832 AATGAAAATTTCCAGAATTAAATTACGAGTTAAAAAATGAAAAT
1 AATGAAAATGTCCAGAATTAAATCACGAGTCAAAAAATGAAAAT
3204876 GACTGGATCA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
46 4 0.11
47 34 0.89
ACGTcount: A:0.53, C:0.08, G:0.15, T:0.24
Consensus pattern (47 bp):
AATGAAAATGTCCAGAATTAAATCACGAGTCAAAAAATGAAAATAAT
Found at i:3204971 original size:35 final size:35
Alignment explanation
Indices: 3204927--3205012 Score: 109
Period size: 35 Copynumber: 2.5 Consensus size: 35
3204917 GTTAAAGCAC
** **
3204927 GAGTCAGAAAATGAAAACAACTGGGACTAAACCCT
1 GAGTCAGAAAATGAAAACAACCAGGACTAAACAAT
* * *
3204962 GAGTGAGAAAATGAAAACCACCAGGATTAAACAAT
1 GAGTCAGAAAATGAAAACAACCAGGACTAAACAAT
3204997 GAGTCAGAAAATGAAA
1 GAGTCAGAAAATGAAA
3205013 GTGATTGGCA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.50, C:0.15, G:0.21, T:0.14
Consensus pattern (35 bp):
GAGTCAGAAAATGAAAACAACCAGGACTAAACAAT
Found at i:3205096 original size:35 final size:35
Alignment explanation
Indices: 3205032--3205159 Score: 150
Period size: 35 Copynumber: 3.6 Consensus size: 35
3205022 ATTAAATGAT
* *
3205032 GAGTCAAAAAATGAAAAATGACTGGGATTATACCAC
1 GAGTCAAAAAATG-AAAATGACTGAGATTATACCAA
* * * **
3205068 GAGTTAAAAAATGAAAATGACTAAGATTAAATAAA
1 GAGTCAAAAAATGAAAATGACTGAGATTATACCAA
3205103 GAGTCAAAAAATGAAAATGACTGAGATT-TAACCAA
1 GAGTCAAAAAATGAAAATGACTGAGATTAT-ACCAA
* *
3205138 AAGTCAAAAAATAAAAATGACT
1 GAGTCAAAAAATGAAAATGACT
3205160 CACGAGTCAA
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
35 65 0.84
36 12 0.16
ACGTcount: A:0.55, C:0.09, G:0.16, T:0.20
Consensus pattern (35 bp):
GAGTCAAAAAATGAAAATGACTGAGATTATACCAA
Found at i:3205155 original size:70 final size:71
Alignment explanation
Indices: 3205022--3205159 Score: 190
Period size: 70 Copynumber: 2.0 Consensus size: 71
3205012 AGTGATTGGC
* * * ** * *
3205022 ATTAAATGATGAGTCAAAAAATGAAAAATGACTGGGATTATACCACGAGTTAAAAAATGAAAATG
1 ATTAAATAAAGAGTCAAAAAATGAAAAATGACTGAGATTATACCAAAAGTCAAAAAATAAAAATG
3205087 ACTAAG
66 ACTAAG
3205093 ATTAAATAAAGAGTCAAAAAATG-AAAATGACTGAGATT-TAACCAAAAGTCAAAAAATAAAAAT
1 ATTAAATAAAGAGTCAAAAAATGAAAAATGACTGAGATTAT-ACCAAAAGTCAAAAAATAAAAAT
3205156 GACT
65 GACT
3205160 CACGAGTCAA
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
69 1 0.02
70 37 0.63
71 21 0.36
ACGTcount: A:0.54, C:0.09, G:0.15, T:0.22
Consensus pattern (71 bp):
ATTAAATAAAGAGTCAAAAAATGAAAAATGACTGAGATTATACCAAAAGTCAAAAAATAAAAATG
ACTAAG
Found at i:3205225 original size:35 final size:35
Alignment explanation
Indices: 3205186--3205263 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 35
3205176 GAAATGAATG
*
3205186 GGATTAAACCATGGGTTAAAAAATGAAAACGACCA
1 GGATTAAACCATGGGCTAAAAAATGAAAACGACCA
* * *
3205221 GGATTAAACCTTGGGCTAGAAAATGAAAACGATCA
1 GGATTAAACCATGGGCTAAAAAATGAAAACGACCA
*
3205256 AGATTAAA
1 GGATTAAA
3205264 TCAGGAGTCT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (35 bp):
GGATTAAACCATGGGCTAAAAAATGAAAACGACCA
Found at i:3205368 original size:35 final size:35
Alignment explanation
Indices: 3205240--3206118 Score: 215
Period size: 35 Copynumber: 24.6 Consensus size: 35
3205230 CTTGGGCTAG
* * **
3205240 AAAATGAAAACGATCAAGATTAAATCAGGAGTCTG
1 AAAATGAAAATGATCAAGATTAAATCACGAGTCAA
* * ** * **
3205275 AAAATGAAATTGATCGATTTTAAATCACAAACCAA
1 AAAATGAAAATGATCAAGATTAAATCACGAGTCAA
* *
3205310 AGAAATAAAAATGATTGAA-ATTAAATCACGAGTCAA
1 A-AAATGAAAATGA-TCAAGATTAAATCACGAGTCAA
*
3205346 AAAATGAAAATGATCAAGATTAAACCACGAGTTAGAAAACAAAAA
1 AAAATGAAAATGATCAAGATTAAATCACGAG-T------C---AA
* ** * * * * *
3205391 AGATAATGAAAATTATTGAAATTAAATTATGATTCAG
1 A-A-AATGAAAATGATCAAGATTAAATCACGAGTCAA
* * * * *
3205428 AAAATGAAAATGACCCAGATCAAAAT-GCGAGTTAA
1 AAAATGAAAATGATCAAGAT-TAAATCACGAGTCAA
* * * *
3205463 AAAATGAAAACGATCAAAATTAAAGCATGAGTCAA
1 AAAATGAAAATGATCAAGATTAAATCACGAGTCAA
* * * * * ** *
3205498 AAAATGAAAA-CAACTAGGACTAAACCTTGAGTAAGA
1 AAAATGAAAATGATC-AAGATTAAATCACGAGTCA-A
** *
3205534 AAAATGAAAACCA-CTAAGATTAAACCACGAGTCAA
1 AAAATGAAAATGATC-AAGATTAAATCACGAGTCAA
** *** * *
3205569 AAAATGAAAGCGATTGGGATTAAATGACAAGTCAGA
1 AAAATGAAAATGATCAAGATTAAATCACGAGTCA-A
* * ** * *
3205605 TAAAATAAAAAACGA-CTTGGATTATACCACGAGTCAA
1 -AAAAT-GAAAATGATC-AAGATTAAATCACGAGTCAA
* * * *
3205642 AAAATGAAAATGACCAAAATT-AATCATGAGTTAA
1 AAAATGAAAATGATCAAGATTAAATCACGAGTCAA
* ** **
3205676 AAAATAAAAATGA-CAAGGATTAAA-CAATACGTTGA
1 AAAATGAAAATGATCAA-GATTAAATCACGA-GTCAA
* * * * *
3205711 AAAATGAAAACGAT-AGGTTTTAAAGT-ACAAGTCAT
1 AAAATGAAAATGATCAAG-ATTAAA-TCACGAGTCAA
* * * * * ** *
3205746 AAAATGTAAAA-CAACAGGGACTAAACCATAAGTTAA
1 AAAATG-AAAATGATCA-AGATTAAATCACGAGTCAA
* * * * * * *
3205782 AAAGTGAAAATGACCGAGATTAAACCATGAATCAG
1 AAAATGAAAATGATCAAGATTAAATCACGAGTCAA
** * * *
3205817 AAAATGAAAACAATCAAAAATTAAATGATGAGTCAA
1 AAAATGAAAATGATC-AAGATTAAATCACGAGTCAA
**
3205853 AAAATGAAAATGAT-TGGCATTAAATCACGAGTCAA
1 AAAATGAAAATGATCAAG-ATTAAATCACGAGTCAA
* *
3205888 AGAAATAAAAATGATCGAA-ATCAAATCACGAGTCAA
1 A-AAATGAAAATGATC-AAGATTAAATCACGAGTCAA
** ** *
3205924 AAAATGAAAATGATCGGGATTAAGCCACTAGTCAA
1 AAAATGAAAATGATCAAGATTAAATCACGAGTCAA
* * * * * * * * *
3205959 GAAACGAAAACGACCAAAATTAAAGCATGAGTTAG
1 AAAATGAAAATGATCAAGATTAAATCACGAGTCAA
* * * * *
3205994 AAAATAAAAATGATTGAA-ATTAAATCATGAGCCTA
1 AAAATGAAAATGA-TCAAGATTAAATCACGAGTCAA
* ** * * *
3206029 AAACTGAAAATGA-CCGGGTCTAAACCATGAGTCAA
1 AAAATGAAAATGATCAAGAT-TAAATCACGAGTCAA
* * * *
3206064 AAAATTAAAATGA-CAAGGATTAAACCACGAGTTAG
1 AAAATGAAAATGATCAA-GATTAAATCACGAGTCAA
* *
3206099 AGAATGAAAATGATCGAGAT
1 AAAATGAAAATGATCAAGAT
3206119 GAAACCATTA
Statistics
Matches: 602, Mismatches: 193, Indels: 98
0.67 0.22 0.11
Matches are distributed among these distances:
33 3 0.00
34 37 0.06
35 351 0.58
36 149 0.25
37 14 0.02
38 20 0.03
40 1 0.00
42 1 0.00
45 3 0.00
46 2 0.00
47 21 0.03
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (35 bp):
AAAATGAAAATGATCAAGATTAAATCACGAGTCAA
Found at i:3205459 original size:82 final size:81
Alignment explanation
Indices: 3205308--3205466 Score: 192
Period size: 82 Copynumber: 2.0 Consensus size: 81
3205298 ATCACAAACC
* * *
3205308 AAAGAAATAAAAATGATTGAAATTAAATCACGAGTCAAAAAATGAAAATGATCAAGATTAAACCA
1 AAAGAAATAAAAATGATTGAAATTAAATCACGAGTCAAAAAATGAAAATGACCAAGATCAAAACA
*
3205373 CGAGTTAGAAAACAAA
66 CGAGTTAAAAAACAAA
* * * * * * * *
3205389 AAAGATAATGAAAATTATTGAAATTAAATTATGATTCAGAAAATGAAAATGACCCAGATCAAAAT
1 AAAGA-AATAAAAATGATTGAAATTAAATCACGAGTCAAAAAATGAAAATGACCAAGATCAAAAC
*
3205454 GCGAGTTAAAAAA
65 ACGAGTTAAAAAA
3205467 TGAAAACGAT
Statistics
Matches: 64, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
81 5 0.08
82 59 0.92
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (81 bp):
AAAGAAATAAAAATGATTGAAATTAAATCACGAGTCAAAAAATGAAAATGACCAAGATCAAAACA
CGAGTTAAAAAACAAA
Found at i:3205875 original size:71 final size:70
Alignment explanation
Indices: 3205800--3206024 Score: 195
Period size: 71 Copynumber: 3.2 Consensus size: 70
3205790 AATGACCGAG
* *
3205800 ATTAAACCATGAATC-AGAAAATGAAAACAATCAAAAATTAAATGATGAGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAG-AAATGAAAACGATC-AAAATTAAATGATGAGTCAAAAAATGAAAAT
*
3205864 GATTGGC
64 GATTGGA
* * * * * * * *
3205871 ATTAAATCACGAGTCAAAGAAATAAAAATGATCGAAATCAAATCACGAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTC-AAGAAATGAAAACGATCAAAATTAAATGATGAGTCAAAAAATGAAAATG
* *
3205936 ATCGGG
65 ATTGGA
* * * * * *
3205942 ATTAAGCCACT-AGTCAAGAAACGAAAACGACCAAAATTAAA-GCATGAGTTAGAAAATAAAAAT
1 ATTAAACCA-TGAGTCAAGAAATGAAAACGATCAAAATTAAATG-ATGAGTCAAAAAATGAAAAT
*
3206005 GATTGAA
64 GATTGGA
*
3206012 ATTAAATCATGAG
1 ATTAAACCATGAG
3206025 CCTAAAACTG
Statistics
Matches: 118, Mismatches: 31, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
69 1 0.01
70 49 0.42
71 55 0.47
72 11 0.09
73 2 0.02
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.20
Consensus pattern (70 bp):
ATTAAACCATGAGTCAAGAAATGAAAACGATCAAAATTAAATGATGAGTCAAAAAATGAAAATGA
TTGGA
Found at i:3205914 original size:36 final size:35
Alignment explanation
Indices: 3205846--3205939 Score: 134
Period size: 36 Copynumber: 2.7 Consensus size: 35
3205836 ATTAAATGAT
* ** *
3205846 GAGTCAAAAAATGAAAATGATTGGCATTAAATCAC
1 GAGTCAAAAAATGAAAATGATCGAAATCAAATCAC
*
3205881 GAGTCAAAGAAATAAAAATGATCGAAATCAAATCAC
1 GAGTCAAA-AAATGAAAATGATCGAAATCAAATCAC
3205917 GAGTCAAAAAATGAAAATGATCG
1 GAGTCAAAAAATGAAAATGATCG
3205940 GGATTAAGCC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
35 22 0.42
36 30 0.58
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (35 bp):
GAGTCAAAAAATGAAAATGATCGAAATCAAATCAC
Found at i:3206062 original size:105 final size:105
Alignment explanation
Indices: 3205871--3206115 Score: 253
Period size: 105 Copynumber: 2.3 Consensus size: 105
3205861 AATGATTGGC
* * * *
3205871 ATTAAATCACGAGTCAAAGAAATAAAAATGATCGAAATCAAATCACGAGTCAAAAAATGAAAATG
1 ATTAAACCACGAGTTAGA-AAATAAAAATGATCGAAATCAAATCACGAGCCAAAAAATGAAAATG
* * *
3205936 ATCGGGATTAAGCCACTAGTCAAGAAACGAAAACGACCAA-A
65 ACCGGGATTAAACCACTAGTCAAAAAACGAAAACGA-CAAGA
* * * * * * *
3205977 ATTAAAGCATGAGTTAGAAAATAAAAATGATTGAAATTAAATCATGAGCCTAAAACTGAAAATGA
1 ATTAAACCACGAGTTAGAAAATAAAAATGATCGAAATCAAATCACGAGCCAAAAAATGAAAATGA
** * *
3206042 CCGGG-TCTAAACCA-TGAGTCAAAAAATTAAAATGACAAGG
66 CCGGGAT-TAAACCACT-AGTCAAAAAACGAAAACGACAAGA
* *
3206082 ATTAAACCACGAGTTAGAGAATGAAAATGATCGA
1 ATTAAACCACGAGTTAGAAAATAAAAATGATCGA
3206116 GATGAAACCA
Statistics
Matches: 114, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
104 5 0.04
105 95 0.83
106 14 0.12
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.19
Consensus pattern (105 bp):
ATTAAACCACGAGTTAGAAAATAAAAATGATCGAAATCAAATCACGAGCCAAAAAATGAAAATGA
CCGGGATTAAACCACTAGTCAAAAAACGAAAACGACAAGA
Found at i:3206175 original size:36 final size:36
Alignment explanation
Indices: 3206079--3206177 Score: 94
Period size: 36 Copynumber: 2.8 Consensus size: 36
3206069 TAAAATGACA
* * * **
3206079 AGGATTAAACCACGAGTTAGAGAATG-AAAATGATC
1 AGGATAAAACCATGAGTTAGAAAATGAAAAACAATC
* * * *
3206114 -GAGATGAAACCATTAGTCAGGAAATGAAAAACAATC
1 AG-GATAAAACCATGAGTTAGAAAATGAAAAACAATC
3206150 AGGATAAAACCATGAGTTAGAAAATGAA
1 AGGATAAAACCATGAGTTAGAAAATGAA
3206178 GACAAATGGG
Statistics
Matches: 49, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
34 1 0.02
35 18 0.37
36 29 0.59
37 1 0.02
ACGTcount: A:0.49, C:0.11, G:0.21, T:0.18
Consensus pattern (36 bp):
AGGATAAAACCATGAGTTAGAAAATGAAAAACAATC
Found at i:3206287 original size:35 final size:35
Alignment explanation
Indices: 3206226--3206309 Score: 82
Period size: 35 Copynumber: 2.4 Consensus size: 35
3206216 ATGACATGCA
***
3206226 TCAGAAAATAAAAATGACTGGGATT-AAGCAAAGAG
1 TCAGAAAATAAAAATGACTCCAATTAAAGC-AAGAG
*
3206261 TCAGAAAATAAAAATGA-TCCCAATTAAATCAAGAG
1 TCAGAAAATAAAAATGACT-CCAATTAAAGCAAGAG
* *
3206296 TCAAAAAATGAAAA
1 TCAGAAAATAAAAA
3206310 CGAACAAGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
34 1 0.02
35 37 0.90
36 3 0.07
ACGTcount: A:0.56, C:0.11, G:0.15, T:0.18
Consensus pattern (35 bp):
TCAGAAAATAAAAATGACTCCAATTAAAGCAAGAG
Found at i:3206322 original size:35 final size:35
Alignment explanation
Indices: 3206256--3206519 Score: 194
Period size: 35 Copynumber: 7.5 Consensus size: 35
3206246 GGATTAAGCA
* * *
3206256 AAGAGTCAGAAAATAAAAATGATCCCA-ATTAAATC
1 AAGAGTCAAAAAATGAAAATGAT-CGAGATTAAATC
* * * *
3206291 AAGAGTCAAAAAATGAAAACGAACAAGATTAAACC
1 AAGAGTCAAAAAATGAAAATGATCGAGATTAAATC
* * * * *
3206326 ATGTGTCAGAAAATGAAAATGAAT-GGGA-TAAAAC
1 AAGAGTCAAAAAATGAAAATG-ATCGAGATTAAATC
* * * * * *
3206360 ATGGGTTAGAAAATGAAAAAGACCGAGATTAAATC
1 AAGAGTCAAAAAATGAAAATGATCGAGATTAAATC
* *
3206395 ATGAGTCAAAAAATGAAAATGATCGATATTAAATC
1 AAGAGTCAAAAAATGAAAATGATCGAGATTAAATC
** * * * *
3206430 ACA-AGCTTGAGAAATAAAAATGATCAAAATTAAATC
1 A-AGAG-TCAAAAAATGAAAATGATCGAGATTAAATC
* * * *
3206466 ACGAGTCAAAAAATTAAAATGATTGAGATTAAACC
1 AAGAGTCAAAAAATGAAAATGATCGAGATTAAATC
3206501 AAGAGTCAAAAAATGAAAA
1 AAGAGTCAAAAAATGAAAA
3206520 CGATAATGAA
Statistics
Matches: 178, Mismatches: 44, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
33 1 0.01
34 28 0.16
35 121 0.68
36 28 0.16
ACGTcount: A:0.54, C:0.10, G:0.16, T:0.20
Consensus pattern (35 bp):
AAGAGTCAAAAAATGAAAATGATCGAGATTAAATC
Found at i:3206427 original size:104 final size:105
Alignment explanation
Indices: 3206226--3206413 Score: 256
Period size: 104 Copynumber: 1.8 Consensus size: 105
3206216 ATGACATGCA
* * *
3206226 TCAGAAAATAAAAATGACTGGGATTAAGCAAAGAGTCAGAAAATAAAAATGATCCCAATTAAATC
1 TCAGAAAATAAAAATGAATGGGATAAAACAAAGAGTCAGAAAATAAAAATGATCCCAATTAAATC
3206291 AAGAGTCAAAAAATGAAAACGAACAAGATTAAACCATGTG
66 AAGAGTCAAAAAATGAAAACGAACAAGATTAAACCATGTG
* * * * *
3206331 TCAGAAAATGAAAATGAATGGGATAAAAC-ATGGGTTAGAAAATGAAAAA-GA-CCGAGATTAAA
1 TCAGAAAATAAAAATGAATGGGATAAAACAAAGAGTCAGAAAAT-AAAAATGATCCCA-ATTAAA
*
3206393 TCATGAGTCAAAAAATGAAAA
64 TCAAGAGTCAAAAAATGAAAA
3206414 TGATCGATAT
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
103 3 0.04
104 39 0.54
105 30 0.42
ACGTcount: A:0.54, C:0.10, G:0.18, T:0.18
Consensus pattern (105 bp):
TCAGAAAATAAAAATGAATGGGATAAAACAAAGAGTCAGAAAATAAAAATGATCCCAATTAAATC
AAGAGTCAAAAAATGAAAACGAACAAGATTAAACCATGTG
Found at i:3206631 original size:35 final size:34
Alignment explanation
Indices: 3206591--3206918 Score: 137
Period size: 35 Copynumber: 9.4 Consensus size: 34
3206581 ACGCAAGTTA
*
3206591 AAAAATGAAAATGACCGGAATTAAAGCATGAGTC
1 AAAAATGAAAATGACCGGAATTAAACCATGAGTC
** * * * *
3206625 AGAAAATGAAAATGATTGGGACTAAACCCTGAGCC
1 A-AAAATGAAAATGACCGGAATTAAACCATGAGTC
* ** * *
3206660 AAAAATGAATACCACTAGG-ATTAAACCATGAGTT
1 AAAAATGAAAATGAC-CGGAATTAAACCATGAGTC
* * * * *
3206694 AGAAAATGAAAGCT-ATCGGGATTAAACGATGAGTT
1 A-AAAATGAAA-ATGACCGGAATTAAACCATGAGTC
* ** * * * *
3206729 AGAAAATAAAAAACAATCGAGAA-TATACCACGTGTC
1 A-AAAAT-GAAAATGACCG-GAATTAAACCATGAGTC
*
3206765 AAAAATTG-AAATGACC-GAGATTAAATCATGAGTC
1 AAAAA-TGAAAATGACCGGA-ATTAAACCATGAGTC
* * * * * *
3206799 AAAAATAAAAATGACAGGGACTAAACAATGCGTC
1 AAAAATGAAAATGACCGGAATTAAACCATGAGTC
* * *
3206833 AAAAATTGAAAACGACAGG-ATTAAAGCATGAGTC
1 AAAAA-TGAAAATGACCGGAATTAAACCATGAGTC
** * * **
3206867 AAAAAATGTAAAACAACAGGGATTAAACCACAAGTC
1 -AAAAATG-AAAATGACCGGAATTAAACCATGAGTC
3206903 AAAAAGTGAAAATGAC
1 AAAAA-TGAAAATGAC
3206919 TGAGATTACA
Statistics
Matches: 218, Mismatches: 58, Indels: 35
0.70 0.19 0.11
Matches are distributed among these distances:
32 2 0.01
33 2 0.01
34 80 0.37
35 101 0.46
36 31 0.14
37 2 0.01
ACGTcount: A:0.50, C:0.13, G:0.19, T:0.18
Consensus pattern (34 bp):
AAAAATGAAAATGACCGGAATTAAACCATGAGTC
Found at i:3206926 original size:35 final size:35
Alignment explanation
Indices: 3206755--3207024 Score: 163
Period size: 35 Copynumber: 7.7 Consensus size: 35
3206745 TCGAGAATAT
* * *
3206755 ACCACGTGTCAAAAATTG-AAATGACCGAGATTAA
1 ACCACGAGTCAAAAAATGAAAATGACAGAGATTAA
* * * * *
3206789 ATCATGAGTC-AAAAATAAAAATGACAGGGACTAA
1 ACCACGAGTCAAAAAATGAAAATGACAGAGATTAA
* * * * *
3206823 ACAATGCGTCAAAAATTGAAAACGACAG-GATTAA
1 ACCACGAGTCAAAAAATGAAAATGACAGAGATTAA
* * ** *
3206857 AGCATGAGTCAAAAAATGTAAAACAACAGGGATTAA
1 ACCACGAGTCAAAAAATG-AAAATGACAGAGATTAA
* * * *
3206893 ACCACAAGTCAAAAAGTGAAAATGACTGAGATTAC
1 ACCACGAGTCAAAAAATGAAAATGACAGAGATTAA
* * * *
3206928 ATCACAAGTCAAAAAATGAAAACGACCA-AAATTAA
1 ACCACGAGTCAAAAAATGAAAATGA-CAGAGATTAA
* * * **
3206963 ACGACAAGGCAAAAAATGAAAATGATTG-GCATTAA
1 ACCACGAGTCAAAAAATGAAAATGACAGAG-ATTAA
** *
3206998 ATAACGAGTCAAAGAAATAAAAATGAC
1 ACCACGAGTCAAA-AAATGAAAATGAC
3207025 TGAAATCAAA
Statistics
Matches: 180, Mismatches: 48, Indels: 14
0.74 0.20 0.06
Matches are distributed among these distances:
33 5 0.03
34 46 0.26
35 97 0.54
36 32 0.18
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (35 bp):
ACCACGAGTCAAAAAATGAAAATGACAGAGATTAA
Found at i:3207156 original size:35 final size:35
Alignment explanation
Indices: 3207116--3213345 Score: 935
Period size: 35 Copynumber: 176.8 Consensus size: 35
3207106 AATTCACCAG
*
3207116 GATTAAACCACGAGTTAGAAAATGAAAATGATCGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * *
3207151 GATTAAATCATGAGTCAAAAAATAAAAATTA-C-A
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * *
3207184 GGTATTAAACAACAC-A-TTAGAAAATGAAAACGA-CAA
1 -G-ATTAAAC--CACGAGTCAGAAAATGAAAATGATCGA
*** * *
3207220 GGATTAAAGTGCGAGTTAGAAAATGTAAAATAATCGA
1 -GATTAAACCACGAGTCAGAAAATG-AAAATGATCGA
** *
3207257 GATTAAACCATAAG-CA-AAAATTGAAAATGATTGA
1 GATTAAACCACGAGTCAGAAAA-TGAAAATGATCGA
* * * *
3207291 GATTAAACCACGAGTCAGAAAATGAGAA-CAACTA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
** *
3207325 GAATTAAATGACGAGTCAAAAAATGAAAATGA-CTGA
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * * * * *
3207361 CATTAAATCATGTGTCAAAAAAAGAAAAATGA-CTAA
1 GATTAAACCACGAGTCAGAAAATG-AAAATGATC-GA
* * * * * * * *
3207397 AATCAAATCATGAGCCAAAAAATGAAAATGGTTGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * *
3207432 G-TTAAACCACTAGT--GAAGATATGAAAA-CAACCA
1 GATTAAACCACGAGTCAGAA-A-ATGAAAATGATCGA
* * * * * *
3207465 TAATTAAATCATGAGTCAAAAAATAAAAATGACCGA
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * *
3207501 AATTAAATCACGAGTCTA-AAATTGAAAATAATTGG
1 GATTAAACCACGAGTC-AGAAAATGAAAATGATCGA
* * * *
3207536 GATTAAACCACGAGTCAAAAAATTAAAACGAT-AA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* *
3207570 GGATTAAACCATGAGTCAGAGAATGAAAATGA-CAGA
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * * *
3207606 AATGAAAGCACCAGTCAAAAAATGAAAAATGATCTG-
1 GATTAAACCACGAGTCAGAAAATG-AAAATGATC-GA
* ** * * ** * * *
3207642 GATTAAATCGTGGGACAGAAAATGAAGGTAATGGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* *
3207677 GATTAAACCAC-ATGTTAGAGAAATAAAAATGAT-GA
1 GATTAAACCACGA-GTCAGA-AAATGAAAATGATCGA
* *
3207712 GAATTAAACCACAAGTCA-AAAATGAAAATGATAG-
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATCGA
*
3207746 GAATTAAACCATGAGTCA-AAAATGAAAATGA-CTG-
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* *
3207780 GATTAAATCACGAGTCAGAAAATGAAAATGATCGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * *
3207815 GATTAAACCATGAGTTAGAAAATAAAAATGACTTGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGA-TCGA
* * * * * * *
3207851 -ATAAAATCACAAGTCAAAAAATGAAAACGACCGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * *
3207885 GATTAAACCATGGGTCAAAAAATGAAAATGA-CTA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * *
3207919 GGATTAAACCATGGGTTAGAAAATGAAAATGATCGA
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* *** *
3207955 TATTAAATTGCGAGTCAAAAAATGAAAATGATCTG-
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* ** ** * * * *
3207990 TATTAAATAATAAGCCAGAGAAATAAAAAAGATCAA
1 GATTAAACCACGAGTCAGA-AAATGAAAATGATCGA
* * ** *
3208026 AATTAAATCACGAGTTGGAAAATGAAAATGA-CCA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* ** * * * * *
3208060 GGATCAAAATACGAGTTAAAAAATGAAAACGACCAA
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * *
3208096 AATTAAAGCATGAGTCAGAAAATGACAATGA-CTGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* *** * * *** *
3208131 GACTAAACCTTAAGTGAGAGAATGAAAA-CCCCTA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* *** *
3208165 GGATTAAACCATGAGTCAGAAAATGAAAGCAATCGG
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * *
3208201 GATTAAACGACAAGTCAAAAAATAAAAAATGATTGG
1 GATTAAACCACGAGTCAGAAAAT-GAAAATGATCGA
* * * * * *
3208237 GATTATACCATGGGTAAAAAAATGAAAACGATCGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * ** * * * *
3208272 CATTAAATCATAAGTAAAAAAATAAAAATGA-CAGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * *
3208307 GACTAAA-CACTGCGTCAAAAAATGAAAACGA-C-A
1 GATTAAACCAC-GAGTCAGAAAATGAAAATGATCGA
* * * * * *
3208340 GGATTAAAGCATGAGTCAAAAAATGTAAAA-CAACAGG
1 -GATTAAACCACGAGTCAGAAAATG-AAAATGATC-GA
*
3208377 GATTAAACCACAAGTCA-AAAAGTGAAAATGA-CTGA
1 GATTAAACCACGAGTCAGAAAA-TGAAAATGATC-GA
* * * * *
3208412 GATTAAATCACAAGTCAAAAAATGAAAATGACCAA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * *
3208447 AATTAAACGACAAGTCAAAAAATGAAAATGACCG-
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
** * * *
3208481 GCATTAAATAATGAGTCAAAGAAATAAAAATGA-CTGA
1 G-ATTAAACCACGAGTCAGA-AAATGAAAATGATC-GA
* * ** * * * *
3208518 AATCAAATTATGAATCAGAAAATTAAAATGA-CCA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * *
3208552 GGATTAAACCACTAGTCA-AGAAATGAAAATAATCAA
1 -GATTAAACCACGAGTCAGA-AAATGAAAATGATCGA
* * * * *
3208588 AATT-AATCATGAGTCAAAAAATAAAAATGATCGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * *
3208622 AATTAAATCATGAGTCTA-AAACTGAAAATGACCGG
1 GATTAAACCACGAGTC-AGAAAATGAAAATGATCGA
* * * * *
3208657 GATTAAATCACGAATCAGAAAACT-AAACTGATAGG
1 GATTAAACCACGAGTCAGAAAA-TGAAAATGATCGA
* * *
3208692 GATTAAACCATGAGTCAGAGAATGAAAATGACCGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * *
3208727 GATGAAAACACTAGTCAGAAAATGAAAAACGATTGG
1 GATTAAACCACGAGTCAGAAAATG-AAAATGATCGA
* * ** * *
3208763 GAATT-AACAACGAG-CTAGAAAATGAAGACAATGGG
1 G-ATTAAACCACGAGTC-AGAAAATGAAAATGATCGA
* * * * *
3208798 GCA-TAAACCAGGAATTAGAGAAATAAAAATGA-CCA
1 G-ATTAAACCACGAGTCAGA-AAATGAAAATGATCGA
* * * *
3208833 GAGTTAAATCACGATTTAGAAAATGAAAATGAT-AA
1 GA-TTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * ** * *
3208868 GAATTAAGCCATGAGTCAAAAAAT-AAAAACAACTGG
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * *
3208904 GATTAAATCACAAGTCAAAAAATGAAAACGATCGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * *
3208939 GATTAAACCATGAATCAGAAAATAAAAATGA-CCA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * *
3208973 AATTAAATCATGAGTCAGAAAATAAAAATGAACGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * *
3209008 GATTAAACCATGGGTCAAAAAATGAAAATGA-CTA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
** * * * * * *
3209042 GGATTAAACCTTGGGTTAGAGAATGAAAACGACCAA
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* ** * *
3209078 GATTAAATCGTGAGTCAGAAAATGAAATTGATTG-
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * *
3209112 GTATTAAATCACGAGCCAGAGAAATAAAAATGATTGA
1 G-ATTAAACCACGAGTCAGA-AAATGAAAATGATCGA
* * * *
3209149 CATTAAATCACGAGTCAGAAAATGAAAACGATCAA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * *
3209184 GATTAAACTACGAGTTAGAAAATGAAAACGAT--A
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* ** * * * *
3209217 -ATGAAA--ATTA--C-CAAAATTAAATTACTGCTTAGAA
1 GATTAAACCACGAGTCAGAAAATGAAA--A-TG-ATCG-A
* * * * * **
3209251 AATGAAA--ATGA-TCGGGATAAA--AACATGAGTTAAAA
1 GATTAAACCACGAGTC-AGA-AAATGAAAATGA--T-CGA
* * * *
3209286 AATGAAA--ACGA--CTG-AAATTAAAGCATGAATCAAGA
1 GATTAAACCACGAGTCAGAAAATGAAA--ATG-ATC--GA
* * * * * *
3209321 AATGAAA--ACGACT-AG-GACT-AAACCTTGAGT-GA
1 GATTAAACCACGAGTCAGAAAATGAAA--ATGA-TCGA
* * * *
3209353 GAAAATGAAAACCACCGGGATTA-AACCAGGAGTTAGAAAATGAAAGCGA
1 G---AT-TAAACCA-CGAG-TCAGAA--A--A--T-GAAAATG--ATCGA
* * * *
3209402 TTGGGATTAAACGATGAGTCAAAAAATGAAAAATGA-CTA
1 ----GATTAAACCACGAGTCAGAAAATG-AAAATGATCGA
* * * *
3209441 GGATTATACCATGAGTCAAAAAATGAAAATGA-CAGG
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * * *
3209477 GATTAAATCATGAGTCAAAAAATAAAAATGA-CAA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * *
3209511 GGATTAAACAATGCGTCAAAAAATGAAAACGA-CAA
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * * *
3209546 GGATTAAAGCATGAGTTAGAGAATGTAAAA-CAACAGG
1 -GATTAAACCACGAGTCAGAAAATG-AAAATGATC-GA
* * * *
3209583 GATTAAACTACAACTCA-AAAAGTGAAAATGATTGA
1 GATTAAACCACGAGTCAGAAAA-TGAAAATGATCGA
* *
3209618 GATTAAACCATGAGTCAGAAAATAAAAATGATC-A
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
** * * *
3209652 GAGTTAAATGATGAGTCA-AAAA-AAAAATGACCG-
1 GA-TTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * *
3209685 GTATTAAATCATGAGTC---AAA-G--AACGACCGA
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * ** * * * ** *
3209715 AATCAAATTACAAGTCAAAAAATAAAAATGGCCAA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * *
3209750 GATTAAACCACTAGTCA-AGAAACGAAAATCATCGA
1 GATTAAACCACGAGTCAGA-AAATGAAAATGATCGA
* * * * * *
3209785 AATTAAATCACGAGCCATAAAATAAAAATGACCGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * * *
3209820 AATTAAATCATGACT-ATAAAATTAAAAATGA-CAGG
1 GATTAAACCACGAGTCAGAAAA-TGAAAATGATC-GA
* * * *
3209855 GATTAAACCACAAATCAAAAAATTAAAATGA-C-A
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * *
3209888 TGGATTAAACCATGAGTTAGAGAATAAAAACGACCGA
1 --GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * **
3209925 GATGAAACCAATG-GTCAGAAAATGAAGACA-AAAAG-
1 GATTAAACC-ACGAGTCAGAAAATGAA-A-ATGATCGA
* * *
3209960 GATTAAACCACAAGTCAGAGAAAT-AAATTTGA-CTA
1 GATTAAACCACGAGTCAGA-AAATGAAA-ATGATCGA
* * * *
3209995 GAACTAAATCACAAGTCAGAAAATGAAAATGAT-GG
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATCGA
*
3210030 GAATTAAA--ACGAGAATCAGAAAATGAAAACGATCGA
1 G-ATTAAACCACGAG--TCAGAAAATGAAAATGATCGA
* * *
3210066 GATTAAATCC-CGCGTCAAAAAAT-ATAAATGA-CTGG
1 GATTAAA-CCACGAGTCAGAAAATGA-AAATGATC-GA
* * * *
3210101 GA-TAAACCATGAGTCAAAAAATAAAAATGA-CTTA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * * *
3210135 GATTAAATCATGAGTCAAAAAATGAAAAAGA-CCA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * *
3210169 GAATTAAACCATGTGTCAAAAAATAAAAATGAACTG-
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * *
3210205 GATTAAACCATGGGTTAGAAAATGAAAATGA-CTGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * *
3210240 GATTAAATCACAAGTCAAAAAATGAAAACGATCG-
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * * *
3210274 GTATTAAATCACAAGTAAAAAAAAGAAAAATCATCAA
1 G-ATTAAACCACGAGTCAGAAAATG-AAAATGATCGA
* * * * * *
3210311 AATTAAATCACAAGTCAAAAAATGAAAACGATCAA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* **
3210346 GATTAAACCAAGAGTCAGAAAATGAAAGCGAT--A
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
** * * * *
3210379 GTAAAAATTACCA-GAATTA-AATTACGAGTCAAAA-AAT-GA
1 G-ATTAA--ACCACGAGTCAGAA--A--A-TGAAAATGATCGA
* * * ** ** * * **
3210418 AAAT-GACCGGGA-TC--AAAATGTGAGTTA-AAA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * *
3210448 AATGAAA--ACG-GTCGGAATTAAAGCACAA-G-TCAGAA
1 GATTAAACCACGAGTCAGAA--AATG-AAAATGATC-G-A
* * * ** * * *
3210483 AATGAAA--ACGA--CTGGGACT-AAACCCTGAGTTAGAA
1 GATTAAACCACGAGTCAGAAAATGAAA--ATGA--TCG-A
* * * * *
3210518 AATGAAAACCACTAGGATTA-AACCATGAGTCAAAAAATGAGAGCTATCGA
1 GAT-TAAACCACGA-G-TCAGAA--A--A-T--GAAAAT--G----ATCGA
* * ** *
3210568 GATTAAACGATGAGTCAGAAAATGAAAAAAATTGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * ** *
3210603 GAATATACCACAAGTCAAAAAATGAAAACAACCGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * *
3210638 GATTAAATCACGAGTCA-AAAATAAAAATGA-CAGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * * * * *
3210672 GATTAAACAATGTGTCAAAAAATGAAAAAGATAGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * **
3210707 GATTAAAGCACGAGTCAAAAAATGTAAAA-CAAAGA
1 GATTAAACCACGAGTCAGAAAATG-AAAATGATCGA
* * *
3210742 GGATTAAACAACAAGTCA-AAAAGTGAAAATGACCGA
1 -GATTAAACCACGAGTCAGAAAA-TGAAAATGATCGA
* * * *
3210778 GATTAAACCATGAGTAAGAAAATGAAAATGACCAA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * *
3210813 AATTAAACGATGAGTCAAAAAATGAAAATGA-CTG-
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * *
3210847 GCATTAAATCATGAGTCAAAGAAATAAAAATGATCGA
1 G-ATTAAACCACGAGTCAGA-AAATGAAAATGATCGA
* ** * * * *
3210884 AATTAAATTATGAGTGAGAAAATTAAAATGA-CCA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * *
3210918 GGATTAAACCACTAGTCAAGAAACA--AAAACGACCGA
1 -GATTAAACCACGAGTC-AGAAA-ATGAAAATGATCGA
* * * * * *
3210954 AATT-AATCATGAGTCAAAAAATAAAAATGATCAA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * *
3210988 AATTAAATCACGAGTCTA-AAACTGAGAATGAT-TA
1 GATTAAACCACGAGTC-AGAAAATGAAAATGATCGA
* * * * *
3211022 GGATTAAACCATGAGTCAAAAAATTAAAACGA-CAA
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * *
3211057 GGATTAAACAACAAATCAGAGAATGAAAATGACCAA
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * *
3211093 GATGAAACCACTAGTCAGAAAATGAAAAATGATCAA
1 GATTAAACCACGAGTCAGAAAATG-AAAATGATCGA
* * * * * *
3211129 GATTAAACCATGAGTCAAAAAATGAAGA-CAACGGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * *
3211164 GATTAAACCACGAGTTAGAGAAATAAAAATGA-CCA
1 GATTAAACCACGAGTCAGA-AAATGAAAATGATCGA
* * ** *
3211199 GAATTAAATCACGAGTCAAAAAATGAAAACAAT-GG
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * *
3211234 GAATTAAGCCACGAGTCAGAAAATGAAAATTATCGG
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * ** *
3211270 GATTAAATCACAAGTCATAAAATGAAAACCA-CCA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * **
3211304 GGATTAAACTACGTA-TCAAAAAATAAAAATTACCCT
1 -GATTAAACCACG-AGTCAGAAAATGAAAATGATCGA
** * * *
3211340 GATTAAATGATGAGTCAGAAAATGAAAATGACCGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* ** * * * *
3211375 GGTTAAATTATGGGTCAGAAAATGAAAACGACCGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * **
3211410 GATTAAACCATGGGTTAGAAAATGAAAACAATCGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * *
3211445 GATTAAATCACAAGTCTGAAAAATGAAAACGATCG-
1 GATTAAACCACGAGTCAG-AAAATGAAAATGATCGA
* * * * *
3211480 GTATTAAATCACAAGCCAGAGAAATAAAAATGATCAA
1 G-ATTAAACCACGAGTCAGA-AAATGAAAATGATCGA
* * * *
3211517 AATTAAATCACGAGTCAGAAAATGAAAACGATCAA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* *
3211552 GATTAAACCATGAGTCAAAAAATGAAAATGAT--A
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* ** *
3211585 -ATGAAA--ATTA-TC--AAAATTAAATTATGAGTCAGAA
1 GATTAAACCACGAGTCAGAAAATGAAA--ATGA-TC-G-A
* * ** * * ** *
3211619 AATGAAAATGACTGAGATCAAAACACAAGTTAAAAAAAAAAAACGA
1 GAT-TAAACCAC-GAG-TC-AGA-A-AA--T---GAAAATGATCGA
* * *
3211665 CCGTAATTAAAGCACGAGTCAGAAAATGAAAATGATTGG
1 --G--ATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * ** *
3211704 GACTTAATCC-CTAAGTCAGAAAATTAAAACCA-CCA
1 GA-TTAAACCAC-GAGTCAGAAAATGAAAATGATCGA
* *
3211739 GAATTAAACCACGAGTCAAAAAATGAAAATGATCGG
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * *
3211775 GATTAAATCACGAGTCAAAAAATAAAAATGATAGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * *
3211810 GATTAAACAACGCGTCAAAAAATGAAAACGATAGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * *
3211845 GATTAAAGCACGAGTCAAAAAATGTAAAATAATGGG
1 GATTAAACCACGAGTCAGAAAATG-AAAATGATCGA
* *
3211881 GATTAAACCACAAGTCA-AAAAGTTAAAATGATCGA
1 GATTAAACCACGAGTCAGAAAA-TGAAAATGATCGA
* *
3211916 GATTAAACCATGAGTCAGAAAATGAAAAGGA-CTGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* ** * *
3211951 AATTAAATGACGACTCAAAAAATGAAAATGATCG-
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * *
3211985 GCATTAAATCATGAGTCAAAAAAGTAAAAAGGATCGA
1 G-ATTAAACCACGAGTCAGAAAA-TGAAAATGATCGA
* * * * * *
3212022 AATCAAATCACGAGTCACAAAATGAAAATGACCGT
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * *
3212057 GATTAAACCCCTAGTCAAGAAACA--AAAACGATCGA
1 GATTAAACCACGAGTC-AGAAA-ATGAAAATGATCGA
* * * * *
3212092 AATTAAATCATGAGTCTA-AAAATAAAAATGATTGA
1 GATTAAACCACGAGTC-AGAAAATGAAAATGATCGA
* * * * * *
3212127 AATTAAATCACAAATCTA-AAACTGAAAATGA-CTAA
1 GATTAAACCACGAGTC-AGAAAATGAAAATGATC-GA
* * * *
3212162 GATTAAACCACAAGTCAAAAAAT-TAAATCGA-CAA
1 GATTAAACCACGAGTCAGAAAATGAAAAT-GATCGA
* * * * *
3212196 GGATTAAACCATGAGTCAGAGAATGAGAATGATTGG
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* ** *
3212232 GATGAAACCATTAGTTAGAAAATGAAAAATGATCGA
1 GATTAAACCACGAGTCAGAAAATG-AAAATGATCGA
* * * *
3212268 GATTAAACCACGAGTCAGAAAATGAAGA-CAACGGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * *
3212303 GATTAAACCATGAGTCAGAGAAATAAAAATGACCAA
1 GATTAAACCACGAGTCAGA-AAATGAAAATGATCGA
* * * *
3212339 AATTAAATCACGAGTCAGAAAATGAAAACGAT-GG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
*** * * *
3212373 GAATTAAACCATTTGTCAAAAAATGAAAACGACCGA
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * *
3212409 GATTAAATCACGGGTCAAAAAATAAAAACGA-CCA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * *
3212443 GGATTAAACCATGAGTCAAAAAATGAAAATGA-CCA
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * *
3212478 GGATCAAAACATGAGTTAGAAAATGAAAATGATCGA
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* ** * *
3212514 AATTAAAGAATGAGTCAGAAAATGAAAATGA-CTGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * ** *
3212549 GACTAAACC-CTAAGTGAGAAAATGAAAA-CCTCTA
1 GATTAAACCAC-GAGTCAGAAAATGAAAATGATCGA
* * * *
3212583 GGATTAAACCAGGAGTTAGAAAATAAAAATGATCGG
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * *
3212619 GATTAAACGATGAGTCAAAAAATGAAAA-GCAGCCGG
1 GATTAAACCACGAGTCAGAAAATGAAAATG-A-TCGA
** * ** *
3212655 GATTATAA-CAATAGTCAAAAAACAAAAATGA-CCA
1 GATTA-AACCACGAGTCAGAAAATGAAAATGATCGA
* * * * * *
3212689 GGATTAAATCACGGGTCAAAAAATAAAAATGATAGG
1 -GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * ** * * *
3212725 GATGAAACAACGCGTTGGAAATTG-AAACGA-CTAA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
** * * *
3212759 GATTAATGCACGAGTCAGAAAATGTAAAA-CAACAA
1 GATTAAACCACGAGTCAGAAAATG-AAAATGATCGA
* * * *
3212794 GGATTAAACCACAAATCAGAAAGTGAAAATGAAAATAAAATAGCGGG
1 -GATTAAACCACGAGTC----A--GAAAATGAAAAT--GAT--C-GA
* * *
3212841 GATTATACCACGAGTCA-AAAACTAAAAATGATCAA
1 GATTAAACCACGAGTCAGAAAA-TGAAAATGATCGA
* *
3212876 AATT-AA--ACGA-T--GAAAATG--ACT-A--G-
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * *
3212899 CATTAAATCACGAGTCAAAGAAATAAAAATGA-C-A
1 GATTAAACCACGAGTCAGA-AAATGAAAATGATCGA
* * *
3212933 GGAATCAAATCAC-A-TCAGAAAATAAAAATGATCGA
1 -G-ATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* * * * ** *
3212968 AATTAAATCACGAGTCTA-AAACTAAAAACAACCG-
1 GATTAAACCACGAGTC-AGAAAATGAAAATGATCGA
* * * *
3213002 GATTAAACCACGAGTCAAAAAATTAAAATGATAGG
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* ** *
3213037 GATTAAACCACGAGTCAGAGAATGAAAACAACCGA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* ** *
3213072 GATGAAACCATTAGTCAGAAAATGAAAAATGATCGG
1 GATTAAACCACGAGTCAGAAAATG-AAAATGATCGA
* * * *
3213108 GATTAAACCATGAGTCAAAAAAT-AAAGA-CAACGGA
1 GATTAAACCACGAGTCAGAAAATGAAA-ATGATC-GA
* * * * * *
3213143 GATTAAACCATGACTCAAAGAAATAAAAATGACCAA
1 GATTAAACCACGAGTCAGA-AAATGAAAATGATCGA
* * * * * *
3213179 AAGTAAATCATGAGTCAAAAAATGAAAATGATTG-
1 GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
* *
3213213 GAATTAAGCCATGAGTCAG-AAATGAAAATGA-CAGA
1 G-ATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* * * *
3213248 GATTAAATCACGAGTCAAAAAATGAAAACGA-CTAA
1 GATTAAACCACGAGTCAGAAAATGAAAATGATC-GA
* *
3213283 GATTAAACCACGAGTCAGAAAATAAAAACT-ACCTG-
1 GATTAAACCACGAGTCAGAAAATGAAAA-TGATC-GA
* * *
3213318 GATTAAATCAAGAGTCAAAAAATGAAAA
1 GATTAAACCACGAGTCAGAAAATGAAAA
3213346 CGACCAAACT
Statistics
Matches: 4553, Mismatches: 1220, Indels: 844
0.69 0.18 0.13
Matches are distributed among these distances:
23 3 0.00
24 2 0.00
26 5 0.00
27 19 0.00
29 32 0.01
30 22 0.00
31 11 0.00
32 26 0.01
33 87 0.02
34 425 0.09
35 2856 0.63
36 861 0.19
37 33 0.01
38 13 0.00
39 23 0.01
40 9 0.00
41 12 0.00
42 16 0.00
43 3 0.00
44 6 0.00
45 2 0.00
46 22 0.00
47 11 0.00
48 12 0.00
49 28 0.01
50 7 0.00
51 5 0.00
53 2 0.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (35 bp):
GATTAAACCACGAGTCAGAAAATGAAAATGATCGA
Found at i:3207390 original size:36 final size:36
Alignment explanation
Indices: 3207337--3207424 Score: 115
Period size: 36 Copynumber: 2.5 Consensus size: 36
3207327 ATTAAATGAC
* * *
3207337 GAGTCAAAAAATG-AAAATGACTGACATTAAATCAT
1 GAGTCAAAAAATGAAAAATGACTAAAATCAAATCAT
* *
3207372 GTGTCAAAAAAAGAAAAATGACTAAAATCAAATCAT
1 GAGTCAAAAAATGAAAAATGACTAAAATCAAATCAT
*
3207408 GAGCCAAAAAATGAAAA
1 GAGTCAAAAAATGAAAA
3207425 TGGTTGAGTT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
35 11 0.25
36 33 0.75
ACGTcount: A:0.57, C:0.11, G:0.14, T:0.18
Consensus pattern (36 bp):
GAGTCAAAAAATGAAAAATGACTAAAATCAAATCAT
Found at i:3208277 original size:71 final size:71
Alignment explanation
Indices: 3208165--3208335 Score: 168
Period size: 71 Copynumber: 2.4 Consensus size: 71
3208155 AAAACCCCTA
* * * ** *
3208165 GGATTAAACCATGAGTCAGAAAATGAAAGCAATCGGGATTAAA-CGACAAGTCAAAAAATAAAAA
1 GGATTAAACCATGAGTAAAAAAATGAAAACAATCGACATTAAATC-ACAAGTAAAAAAATAAAAA
3208229 ATGATTG
65 ATGATTG
* * * *
3208236 GGATTATACCATGGGTAAAAAAATGAAAACGATCGACATTAAATCATAAGTAAAAAAAT-AAAAA
1 GGATTAAACCATGAGTAAAAAAATGAAAACAATCGACATTAAATCACAAGTAAAAAAATAAAAAA
**
3208300 TGACAG
66 TGATTG
* * *
3208306 GGACTAAA-CACTGCGTCAAAAAATGAAAAC
1 GGATTAAACCA-TGAGTAAAAAAATGAAAAC
3208336 GACAGGATTA
Statistics
Matches: 82, Mismatches: 16, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
69 2 0.02
70 32 0.39
71 47 0.57
72 1 0.01
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.18
Consensus pattern (71 bp):
GGATTAAACCATGAGTAAAAAAATGAAAACAATCGACATTAAATCACAAGTAAAAAAATAAAAAA
TGATTG
Found at i:3208997 original size:104 final size:104
Alignment explanation
Indices: 3208850--3209100 Score: 272
Period size: 104 Copynumber: 2.4 Consensus size: 104
3208840 ATCACGATTT
** ** * *
3208850 AGAAAATGAAAATGATAAGAATTAAGCCATGAGTCAAAAAATAAAAA-CAACTGGGATTAAATCA
1 AGAAAATGAAAATGACCA-AATTAAATCATGAGTCAGAAAATAAAAATCAAC-GGGATTAAACCA
3208914 CAAGTCAAAAAATGAAAACGATCGA-GATTAAACCATGAATC
64 CAAGTCAAAAAATGAAAACGA-CGAGGATTAAACCATGAATC
* * **
3208955 AGAAAATAAAAATGACCAAATTAAATCATGAGTCAGAAAATAAAAATGAACGGGATTAAACCATG
1 AGAAAATGAAAATGACCAAATTAAATCATGAGTCAGAAAATAAAAATCAACGGGATTAAACCACA
* * * * ** *
3209020 GGTCAAAAAATGAAAATGACTAGGATTAAACCTTGGGTT
66 AGTCAAAAAATGAAAACGACGAGGATTAAACCATGAATC
* * *
3209059 AGAGAATGAAAACGACCAAGATTAAATCGTGAGTCAGAAAAT
1 AGAAAATGAAAATGACCAA-ATTAAATCATGAGTCAGAAAAT
3209101 GAAATTGATT
Statistics
Matches: 122, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
103 2 0.02
104 81 0.66
105 39 0.32
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.19
Consensus pattern (104 bp):
AGAAAATGAAAATGACCAAATTAAATCATGAGTCAGAAAATAAAAATCAACGGGATTAAACCACA
AGTCAAAAAATGAAAACGACGAGGATTAAACCATGAATC
Found at i:3209067 original size:139 final size:140
Alignment explanation
Indices: 3207697--3209214 Score: 362
Period size: 141 Copynumber: 10.8 Consensus size: 140
3207687 CATGTTAGAG
** * * * *
3207697 AAATAAAAATGATGAGAATTAAACCACAAGTCA-AAAATGAAAATGATAGGAATTAAACCATGAG
1 AAATAAAAATGACCAGAATTAAATCACGAGTCAGAAAATAAAAATGATAAGAATTAAACCATGAG
* ** * * * * * **
3207761 TC-AAAAATGAAAATGACT-GGATTAAATCACGAGTCAGAAAATGAAAATGATCGGGATTAAACC
66 TCAAAAAATAAAAACAACTAGGATTAAACCACAAGTCAAAAAATGAAAACGACCAAGATTAAACC
* *
3207824 ATGAGTTAGA
131 ATGAATCAGA
** * * * * * *** * *
3207834 AAATAAAAATGACTTGAATAAAATCACAAGTCAAAAAATGAAAACGACCGGGATTAAACCATGGG
1 AAATAAAAATGACCAGAATTAAATCACGAGTCAGAAAATAAAAATGATAAGAATTAAACCATGAG
* ** *** * * * * * * **
3207899 TCAAAAAATGAAAATGACTAGGATTAAACCATGGGTTAGAAAATGAAAATGATCGATATTAAATT
66 TCAAAAAATAAAAACAACTAGGATTAAACCACAAGTCAAAAAATGAAAACGACCAAGATTAAACC
** * *
3207964 GCGAGTCAAA
131 ATGAATCAGA
* * * * * ** * * * *
3207974 AAATGAAAATGATCTGTATTAAATAATAAGCCAGAGAAATAAAAAAGATCAA-AATTAAATCACG
1 AAATAAAAATGACCAGAATTAAATCACGAGTCAGA-AAATAAAAATGAT-AAGAATTAAACCATG
*** * ** * * ** * * *
3208038 AGTTGGAAAATGAAAATGACCAGGATCAAAATACGAGTTAAAAAATGAAAACGACCAAAATTAAA
64 AGTCAAAAAATAAAAACAACTAGGATTAAACCACAAGTCAAAAAATGAAAACGACCAAGATTAAA
* *
3208103 GCATGAGTCAGA
129 CCATGAATCAGA
* * ** * * * *** * * **** *
3208115 AAATGACAATGACTGGGACTAAACCTTAAGTGAGAGAATGAAAACCCCT-AGGATTAAACCATGA
1 AAATAAAAATGACCAGAATTAAATCACGAGTCAGAAAAT-AAAAATGATAAGAATTAAACCATGA
* * * * * * * **** *
3208179 GTCAGAAAATGAAAGCAA-TCGGGATTAAACGACAAGTCAAAAAATAAAAAATGATTGGGATTAT
65 GTCAAAAAATAAAAACAACT-AGGATTAAACCACAAGTCAAAAAAT-GAAAACGACCAAGATTAA
** * *
3208243 ACCATGGGTAAAA
128 ACCATGAATCAGA
* * * ** * * * * * *
3208256 AAATGAAAACGATC-GACATTAAATCATAAGTAAAAAAATAAAAATGACAGGGACTAAA-CACTG
1 AAATAAAAATGACCAGA-ATTAAATCACGAGTCAGAAAATAAAAATGATAAGAATTAAACCA-TG
* * * * ** * *
3208319 CGTCAAAAAATGAAAACGAC-AGGATTAAAGCATGAGTCAAAAAATGTAAAAC-AACAGGGATTA
64 AGTCAAAAAATAAAAACAACTAGGATTAAACCACAAGTCAAAAAATG-AAAACGACCA-AGATTA
*
3208382 AACCA-CAAGTCA-A
127 AACCATGAA-TCAGA
* * * * * * * *
3208395 AAAGTGAAAATGA-CTGAGATTAAATCACAAGTCAAAAAATGAAAATGACCAA-AATTAAACGAC
1 AAA-TAAAAATGACCAGA-ATTAAATCACGAGTCAGAAAATAAAAATGA-TAAGAATTAAACCAT
* * ** * ** ** * * *
3208458 AAGTCAAAAAATGAAAATGAC-CGGCATTAAATAATGAGTCAAAGAAATAAAAATGACTGAA-AT
63 GAGTCAAAAAATAAAAACAACTAGG-ATTAAACCACAAGTCAAA-AAATGAAAACGAC-CAAGAT
* **
3208521 CAAATTATGAATCAGA
125 TAAACCATGAATCAGA
* * * * * * *
3208537 AAATTAAAATGACCAGGATTAAACCACTAGTCA-AGAAATGAAAATAATCAA-AATT-AATCATG
1 AAATAAAAATGACCAGAATTAAATCACGAGTCAGA-AAATAAAAATGAT-AAGAATTAAACCATG
** * * * ** * * * **
3208599 AGTCAAAAAATAAAAATGA-TCGAAATTAAATCATGAGTCTAAAACTGAAAATGACCGGGATTAA
64 AGTCAAAAAATAAAAACAACTAG-GATTAAACCACAAGTCAAAAAATGAAAACGACCAAGATTAA
* *
3208663 ATCACGAATCAGA
128 ACCATGAATCAGA
* * * * * * * ** * *
3208676 AAACT-AAACTGA-TAGGGATTAAACCATGAGTCAGAGAATGAAAATGA-CCGAGATGAAAACAC
1 AAA-TAAAAATGACCA-GAATTAAATCACGAGTCAGAAAATAAAAATGATAAGA-ATTAAACCA-
* * * * * * * * * ****
3208738 T-AGTCAGAAAATGAAAAACGATTGGGAATT-AACAACGAG-CTAGAAAATGAAGACAATGGGGC
62 TGAGTCAAAAAAT-AAAAACAACTAGG-ATTAAACCACAAGTC-AAAAAATGAAAACGACCAAG-
* *
3208800 A-TAAACCAGGAATTAGA
123 ATTAAACCATGAATCAGA
* * * * *
3208817 GAAATAAAAATGACCAGAGTTAAATCACGATTTAGAAAATGAAAATGATAAGAATTAAGCCATGA
1 -AAATAAAAATGACCAGAATTAAATCACGAGTCAGAAAATAAAAATGATAAGAATTAAACCATGA
* * * *
3208882 GTCAAAAAATAAAAACAACTGGGATTAAATCACAAGTCAAAAAATGAAAACGATCGAGATTAAAC
65 GTCAAAAAATAAAAACAACTAGGATTAAACCACAAGTCAAAAAATGAAAACGACCAAGATTAAAC
3208947 CATGAATCAGA
130 CATGAATCAGA
* * * *
3208958 AAATAAAAATGACCA-AATTAAATCATGAGTCAGAAAATAAAAATGA-ACGGGATTAAACCATGG
1 AAATAAAAATGACCAGAATTAAATCACGAGTCAGAAAATAAAAATGATA-AGAATTAAACCATGA
* ** **** * * * *
3209021 GTCAAAAAATGAAAATGACTAGGATTAAACCTTGGGTTAGAGAATGAAAACGACCAAGATTAAAT
65 GTCAAAAAATAAAAACAACTAGGATTAAACCACAAGTCAAAAAATGAAAACGACCAAGATTAAAC
* *
3209086 CGTGAGTCAGA
130 CATGAATCAGA
* * *** * * * * *
3209097 AAATGAAATTGATTGGTATTAAATCACGAGCCAGAGAAATAAAAATGAT-TGACATTAAATCACG
1 AAATAAAAATGACCAGAATTAAATCACGAGTCAGA-AAATAAAAATGATAAGA-ATTAAACCATG
* * * * * * * *
3209161 AGTCAGAAAATGAAAACGA-TCAAGATTAAACTACGAGTTAGAAAATGAAAACGA
64 AGTCAAAAAATAAAAACAACT-AGGATTAAACCACAAGTCAAAAAATGAAAACGA
3209215 TAATGAAAAT
Statistics
Matches: 1034, Mismatches: 289, Indels: 112
0.72 0.20 0.08
Matches are distributed among these distances:
137 28 0.03
138 31 0.03
139 192 0.19
140 313 0.30
141 396 0.38
142 70 0.07
143 4 0.00
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (140 bp):
AAATAAAAATGACCAGAATTAAATCACGAGTCAGAAAATAAAAATGATAAGAATTAAACCATGAG
TCAAAAAATAAAAACAACTAGGATTAAACCACAAGTCAAAAAATGAAAACGACCAAGATTAAACC
ATGAATCAGA
Found at i:3209455 original size:36 final size:35
Alignment explanation
Indices: 3209249--3221090 Score: 1033
Period size: 35 Copynumber: 332.4 Consensus size: 35
3209239 TACTGCTTAG
* * * *
3209249 AAAATGAAAATGATC-GGGATAAAAACATGAGTTAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * *
3209284 AAAATGAAAACGACTGAA--ATTAAAGCATGAATCAA
1 AAAATGAAAATGAC--AAGGATTAAACCATGAGTCAA
* * * * * * *
3209319 GAAATGAAAACGACTAGGACTAAACCTTGAGTGAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** ** * * *
3209354 AAAATGAAAACCACCGGGATTAAACCAGGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** *** *
3209389 AAAATGAAAGCGATTGGGATTAAACGATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* *
3209424 AAAATGAAAAATGACTAGGATTATACCATGAGTCAA
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
* *
3209460 AAAATGAAAATGACAGGGATTAAATCATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3209495 AAAATAAAAATGACAAGGATTAAACAATGCGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * *
3209530 AAAATGAAAACGACAAGGATTAAAGCATGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* ** * * ** *
3209565 AGAATGTAAAACAACAGGGATTAAACTACAACTCAA
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
* ** *
3209601 AAAGTGAAAATGA-TTGAGATTAAACCATGAGTCAG
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* **
3209636 AAAATAAAAATGATC-A-GAGTTAAATGATGAGTCAA
1 AAAATGAAAATGA-CAAGGA-TTAAACCATGAGTCAA
* *
3209671 AAAA--AAAATGAC-CGGTATTAAATCATGAGTCAA
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
* *
3209704 AGAACGACCGAAAT--CAA--ATT--A-CA--AGTCAA
1 AAAATGA---AAATGACAAGGATTAAACCATGAGTCAA
* *
3209733 AAAATAAAAATGGCCAA-GATTAAACCACT-AGTCAA
1 AAAATGAAAAT-GACAAGGATTAAACCA-TGAGTCAA
* * * * * * *
3209768 GAAACGAAAATCATCGAA--ATTAAATCACGAGCCAT
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* * *
3209803 AAAATAAAAATGACCGAA--ATTAAATCATGACT-ATA
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCA-A
* * * ** *
3209838 AAATTAAAAATGACAGGGATTAAACCACAAATCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * *
3209873 AAAATTAAAATGACATGGATTAAACCATGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * * *
3209908 AGAATAAAAACGAC-CGAGATGAAACCAATG-GTCAG
1 AAAATGAAAATGACAAG-GATTAAACC-ATGAGTCAA
* ** * **
3209943 AAAATGAAGACAAAAAGGATTAAACCACAAGTCAGA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCA-A
* * * * * * ** *
3209979 GAAAT-AAATTTGACTAGAACTAAATCACAAGTCAG
1 AAAATGAAA-ATGACAAGGATTAAACCATGAGTCAA
** * * *
3210014 AAAATGAAAATGA-TGGGAATTAAAACGA-GAATCAG
1 AAAATGAAAATGACAAGG-ATT-AAACCATGAGTCAA
* * * *
3210049 AAAATGAAAACGATCGA-GATTAAATCC-CGCGTCAA
1 AAAATGAAAATGA-CAAGGATTAAA-CCATGAGTCAA
**
3210084 AAAAT-ATAAATGACTGGGA-TAAACCATGAGTCAA
1 AAAATGA-AAATGACAAGGATTAAACCATGAGTCAA
* * *
3210118 AAAATAAAAATGACTTA-GATTAAATCATGAGTCAA
1 AAAATGAAAATGAC-AAGGATTAAACCATGAGTCAA
* * * *
3210153 AAAATGAAAAAGACCAGAATTAAACCATGTGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * *
3210188 AAAATAAAAATGA-ACTGGATTAAACCATGGGTTAG
1 AAAATGAAAATGACA-AGGATTAAACCATGAGTCAA
* * **
3210223 AAAATGAAAATGAC-TGAGATTAAATCACAAGTCAA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* * ** *
3210258 AAAATGAAAACGATC--GGTATTAAATCACAAGTAAA
1 AAAATGAAAATGA-CAAGG-ATTAAACCATGAGTCAA
* * * * **
3210293 AAAAAGAAAAATCATCAA-AATTAAATCACAAGTCAA
1 AAAATG-AAAATGA-CAAGGATTAAACCATGAGTCAA
* * *
3210329 AAAATGAAAACGATCAA-GATTAAACCAAGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * ** * *
3210364 AAAATGAAAGCGATAGTA-AA-AATTACCAGAATTAAATTACGAGTCA
1 AAAATGAAA---AT-G-ACAAGGATTA-AACCA-T-GAGT-C-A---A
** * *** *
3210410 AAAAATGAAAATGACCGGGATCAAAATGTGAGTTAA
1 AAA-ATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * ** *
3210446 AAAATGAAAACGGTC--GGAATTAAAGCACAAGTCAG
1 AAAATGAAAA-TGACAAGG-ATTAAACCATGAGTCAA
* ** * * * *
3210481 AAAATGAAAACGACTGGGACTAAACCCTGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** *
3210516 AAAATGAAAACCACTAGGATTAAACCATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** * * *
3210551 AAAATGAGAGCT-ATCGA-GATTAAACGATGAGTCAG
1 AAAATGA-AAATGA-CAAGGATTAAACCATGAGTCAA
* * **
3210586 AAAATGAAAA--A-AATTGAGAATATACCACAAGTCAA
1 AAAATGAAAATGACAA--G-GATTAAACCATGAGTCAA
** * * *
3210621 AAAATGAAAACAAC-CGAGATTAAATCACGAGTC-A
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* * * *
3210655 AAAATAAAAATGACAGGGATTAAACAATGTGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * *
3210690 AAAATGAAAAAGATAGGGATTAAAGCACGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * **
3210725 AAAATGTAAAA-CAAAGAGGATTAAACAACAAGTCAA
1 AAAATG-AAAATGACA-AGGATTAAACCATGAGTCAA
* *
3210761 AAAGTGAAAATGAC-CGAGATTAAACCATGAGT-AA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* *
3210795 GAAAATGAAAATGACCAA-AATTAAACGATGAGTCAA
1 -AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* *
3210831 AAAATGAAAATGAC-TGGCATTAAATCATGAGTCAA
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
* ** * *
3210866 AGAAATAAAAATGATCGAA--ATTAAATTATGAGTGAG
1 A-AAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* *
3210902 AAAATTAAAATGACCAGGATTAAACCACT-AGTCAA
1 AAAATGAAAATGACAAGGATTAAACCA-TGAGTCAA
* ** * *
3210937 GAAACAAAAACGACCGAA--ATT-AATCATGAGTCAA
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* * * * *
3210971 AAAATAAAAATGATCAA-AATTAAATCACGAGTCTA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * **
3211006 AAACTGAGAATGATTAGGATTAAACCATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * ** * *
3211041 AAAATTAAAACGACAAGGATTAAACAACAAATCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3211076 AGAATGAAAATGACCAA-GATGAAACCACT-AGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCA-TGAGTCAA
3211111 AAAATGAAAAATGATCAA-GATTAAACCATGAGTCAA
1 AAAATG-AAAATGA-CAAGGATTAAACCATGAGTCAA
* ** ** * *
3211147 AAAATGAAGACAACGGGGATTAAACCACGAGTTAGA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCA-A
* * * * * *
3211183 GAAATAAAAATGACCAGAATTAAATCACGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3211218 AAAATG-AAA--ACAATGGGAATTAAGCCACGAGTCAG
1 AAAATGAAAATGACAA--GG-ATTAAACCATGAGTCAA
* * * ** *
3211253 AAAATGAAAATTATC-GGGATTAAATCACAAGTCAT
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
** * * *
3211288 AAAATGAAAACCACCAGGATTAAACTACGTA-TCAA
1 AAAATGAAAATGACAAGGATTAAACCATG-AGTCAA
* * *** ** *
3211323 AAAATAAAAATTACCCTGATTAAATGATGAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** * ** * *
3211358 AAAATGAAAATGACCGGGGTTAAATTATGGGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * *
3211393 AAAATGAAAACGAC-CGAGATTAAACCATGGGTTAG
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
** * * ** *
3211428 AAAATGAAAACAATCGA-GATTAAATCACAAGTCTGA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTC-AA
* * ** *
3211464 AAAATGAAAACGATC--GGTATTAAATCACAAGCCAGA
1 AAAATGAAAATGA-CAAGG-ATTAAACCATGAGTCA-A
* * * * * *
3211500 GAAATAAAAATGATCAA-AATTAAATCACGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
*
3211535 AAAATGAAAACGATCAA-GATTAAACCATGAGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * *
3211570 AAAATGAAAATGA-TA--ATGAAA--ATTA-TC--
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* ** * **
3211597 AAAATTAAATTATGAGTCAGAAAATGAAAATGACTGAGATCAAA
1 AAAATGAAA--ATGA--CA-AGGAT-TAAACCA-TGAG-TC-AA
* ** * * * *
3211641 ACACAAGTTAAAAAAAAAAAACGACCGTAATTAAAGCACGAGTCAG
1 A-A-AA--T-GAAAATGACAA-G---G--ATTAAACCATGAGTCAA
*** * * * *
3211687 AAAATGAAAATGATTGGGACTTAATCCCTAAGTCAG
1 AAAATGAAAATGACAAGGA-TTAAACCATGAGTCAA
* ** * * *
3211723 AAAATTAAAACCACCAGAATTAAACCACGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3211758 AAAATGAAAATGATC-GGGATTAAATCACGAGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * * * * *
3211793 AAAATAAAAATGATAGGGATTAAACAACGCGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * *
3211828 AAAATGAAAACGATAGGGATTAAAGCACGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* *** **
3211863 AAAATGTAAAATAATGGGGATTAAACCACAAGTCAA
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
* * * *
3211899 AAAGTTAAAATGATCGA-GATTAAACCATGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* ** * *
3211934 AAAATGAAAAGGACTGAA--ATTAAATGACGACTCAA
1 AAAATGAAAATGAC--AAGGATTAAACCATGAGTCAA
*
3211969 AAAATGAAAATGATC--GGCATTAAATCATGAGTCAA
1 AAAATGAAAATGA-CAAGG-ATTAAACCATGAGTCAA
* * * * * *
3212004 AAAAGTAAAAAGGATCGAA--ATCAAATCACGAGTCAC
1 AAAA-TGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* *
3212040 AAAATGAAAATGAC-CGTGATTAAACCCCT-AGTCAA
1 AAAATGAAAATGACAAG-GATTAAA-CCATGAGTCAA
* ** * * *
3212075 GAAACAAAAACGATCGAA--ATTAAATCATGAGTCTA
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* * * ** * *
3212110 AAAATAAAAATGATTGAA--ATTAAATCACAAATCTA
1 AAAATGAAAATGA--CAAGGATTAAACCATGAGTCAA
* **
3212145 AAACTGAAAATGACTAA-GATTAAACCACAAGTCAA
1 AAAATGAAAATGAC-AAGGATTAAACCATGAGTCAA
* *
3212180 AAAAT-TAAATCGACAAGGATTAAACCATGAGTCAG
1 AAAATGAAAAT-GACAAGGATTAAACCATGAGTCAA
* * *** * * * *
3212215 AGAATGAGAATGATTGGGATGAAACCATTAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3212250 AAAATGAAAAATGATCGA-GATTAAACCACGAGTCAG
1 AAAATG-AAAATGA-CAAGGATTAAACCATGAGTCAA
* ** **
3212286 AAAATGAAGACAACGGGGATTAAACCATGAGTCAGA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCA-A
* * * * * *
3212322 GAAATAAAAATGACCAA-AATTAAATCACGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* ** **
3212357 AAAATGAAAACGA-TGGGAATTAAACCATTTGTCAA
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
* * * * *
3212392 AAAATGAAAACGAC-CGAGATTAAATCACGGGTCAA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* * *
3212427 AAAATAAAAACGACCAGGATTAAACCATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * *
3212462 AAAATGAAAATGACCAGGATCAAAACATGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** *
3212497 AAAATGAAAATGATCGAA--ATTAAAGAATGAGTCAG
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
** * * * * *
3212532 AAAATGAAAATGACTGGGACTAAACCCTAAGTGAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
*** * * * *
3212567 AAAATGAAAACCTCTAGGATTAAACCAGGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3212602 AAAATAAAAATGATC-GGGATTAAACGATGAGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
** *
3212637 AAAATGAAAA-GCAGCCGGGATTATAACAAT-AGTCAA
1 AAAATGAAAATG-A-CAAGGATTA-AACCATGAGTCAA
** * * * *
3212673 AAAACAAAAATGACCAGGATTAAATCACGGGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * * * * ***
3212708 AAAATAAAAATGATAGGGATGAAACAACGCGTTGG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * ** * *
3212743 AAATTG-AAACGACTAA-GATTAATGCACGAGTCAG
1 AAAATGAAAATGAC-AAGGATTAAACCATGAGTCAA
** ** *
3212777 AAAATGTAAAACAACAAGGATTAAACCACAAATCAGAAA
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTC---AA
* * * *
3212816 GTGAAAATGAAAATAAAATAGCGGGGATTATACCACGAGTCAA
1 ---AAAATGAAAATGACA-A----GGATTAAACCATGAGTCAA
* * * * * * *
3212859 AAACTAAAAATGATCAA-AATTAAACGATGAAAATGACT
1 AAAATGAAAATGA-CAAGGATTAAACCATG--AGTCA-A
** * * * * *
3212897 AGCATTAAATCACGAGTCAAAGAAATAAA-AATGACAGGAATCAA
1 AAAATGAAA--ATGA--C-AAGGATTAAACCATG--A-G--TCAA
* * * * * *
3212941 ATCACATCAGAAAATAAAAATGATCGAAATTAAATCACGAGTCTA
1 A--AAAT--GAAAATGACAA-G---G--ATTAAACCATGAGTCAA
* *
3212986 AAACT-AAAA--ACAACCGGATTAAACCACGAGTCAA
1 AAAATGAAAATGACAA--GGATTAAACCATGAGTCAA
* * * * *
3213020 AAAATTAAAATGATAGGGATTAAACCACGAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* ** * * * *
3213055 AGAATGAAAACAAC-CGAGATGAAACCATTAGTCAG
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
*
3213090 AAAATGAAAAATGATC-GGGATTAAACCATGAGTCAA
1 AAAATG-AAAATGA-CAAGGATTAAACCATGAGTCAA
*
3213126 AAAAT--AAA-GACAACGGAGATTAAACCATGACTCAA
1 AAAATGAAAATGACAA--G-GATTAAACCATGAGTCAA
* * * *
3213161 AGAAATAAAAATGACCAA-AAGTAAATCATGAGTCAA
1 A-AAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
** *
3213197 AAAATGAAAATGA-TTGGAATTAAGCCATGAGTC-A
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
* * *
3213231 GAAATGAAAATGAC-AGAGATTAAATCACGAGTCAA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* * *
3213266 AAAATGAAAACGACTAA-GATTAAACCACGAGTCAG
1 AAAATGAAAATGAC-AAGGATTAAACCATGAGTCAA
* ** * *
3213301 AAAATAAAAACT-ACCTGGATTAAATCAAGAGTCAA
1 AAAATGAAAA-TGACAAGGATTAAACCATGAGTCAA
* * * ** *
3213336 AAAATGAAAACGACCAAACTGA-TAATGATCGCTATTAAACCAT
1 AAAATGAAAATGA-C-AA-GGATTAA--A-C-C-A-TGAGTCAA
**** * *
3213379 GGGTTAGAAAATGAAAATGATCGATATTAAATCATGAGTCAA
1 AAAAT-GAAAATGACAA-G---G--ATTAAACCATGAGTCAA
* ** *
3213421 AAAATGAAAATGATC--GGTATTAAATCACAAGCCAA
1 AAAATGAAAATGA-CAAGG-ATTAAACCATGAGTCAA
* * * *
3213456 AGAACTAAAAATGATCGAA--ATTAAATCACGAGTCAA
1 A-AAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* **
3213492 AAAATGAAAACGATTTA-GATTAAACCATGAGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
** * * ** * ***
3213527 AAAACAAAAATGATAATGAAAATTACTAGAATTAAATTACGGGTCA
1 AAAATGAAAATGACAA-G--GA-T--TA-AA--CCATGA--GTCAA
* * * *
3213573 AAAAATAAAAATGATCGA-GATTAAAACATGAGTTAA
1 AAA-ATGAAAATGA-CAAGGATTAAACCATGAGTCAA
** * * * *
3213609 AAAATGAAAACAACCAA-AATTAGAGCATGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* *** * * * *
3213644 AAAATGAAAACGATTGGGATTGAACCCTGAGTGAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * ** *
3213679 AAAAT-----TCACCAGGATTAAACCACAAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* *
3213709 AAAATGAAAATGATCGA-GATTAAATCATGAGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * * * * *
3213744 AAAATAAAAATTACAGGGATTAAACAACA-CA-TTAG
1 AAAATGAAAATGACAAGGATTAAAC--CATGAGTCAA
* * * * * *
3213779 AAAATGAAAACGACAGGGATTAAAGCACGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * **
3213814 AAAATGTAAAATAATC-GGGATTAAACCACAAGTCAA
1 AAAATG-AAAATGA-CAAGGATTAAACCATGAGTCAA
* ** * *
3213850 AAACTGAAAATGA-TTGAGATTAAACCACGAGTCAG
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* ** * * ** *
3213885 AAAATGAGAACAACTAGAATTAAATGACGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3213920 AAAATGAAAATGAC-TGACATTAAATCATGAGTCAA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* * * *
3213955 AGAAA-GAAAAATGACTAA-AATCAAATCATGAGCCAA
1 A-AAATG-AAAATGAC-AAGGATTAAACCATGAGTCAA
* ** * *
3213991 AAAATAAAAATG--ATTGAGTTAAGCCACT-ACTCAA
1 AAAATGAAAATGACAAGGA-TTAAACCA-TGAGTCAA
* ** * ** * * *
3214025 GAAATGAAAACAACCATAATTAAATCATGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * *
3214060 AAAATAAAAATGACCGAA--ATTAAATCACGAGTCTA
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
** ** *** *
3214095 AATTTGAAAACAATTGGGATTAAACCACGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * * *
3214130 AAAATTAAAACGATAGGGATTAAACCATGAGCCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** * * **
3214165 GGAATGAAAATGAC-AGAAATGAAACCACCAGTCAA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* * * * *
3214200 AAAATGAAAAATGATAAGGATTAAACCGTGGGACAG
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
** * * * *
3214236 AAAATGAAGGTAATAGGGATTAAACCA-CATGTCAGA
1 AAAATGAAAATGACAAGGATTAAACCATGA-GTCA-A
* ** ** * * ** *
3214272 GAAACAAAAATGATGAGAACTAAACCACAAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** *
3214307 AAAATGAAAATGA-TGGGAATTAAACCATGAGTCAG
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
** * * *
3214342 AAAATGAAAATGA-TTGGATTAAATCACGAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* *
3214376 AAAATGAAAATGACCAGGATTAAACCATGAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* ** * ** ** * *
3214411 AAAATAAAAATGACTTGAATTAAATGAAAACGAC-C
1 AAAATGAAAATGACAAGGATTAAACCATGA-GTCAA
*** * * ** * *
3214446 GGGATTAAACCATGGGTCAAAAAATGAAA--ATGACT-AGGA
1 AAAATGAAA--AT--GAC-AAGGATTAAACCATGAGTCA--A
* *** * *
3214485 TTAAACCCTG-GGTTAGA-AA--ATGAAA--ATGACCGAT-AT
1 --AAA--ATGAAAAT-GACAAGGATTAAACCATGA--G-TCAA
* * ** * ** * *
3214521 TAAATTACGA-GTCAAAAAATGAAA--ATGA-TCGGTAT
1 AAAATGAAAATGAC-AAGGATTAAACCATGAGTC---AA
* * * * ** * *
3214556 TAAAT-AACAA-GCCAGAGAAATAAAAAAGATCGAAATTAA
1 AAAATGAA-AATGACA-AG-GAT-TAAACCAT-G-AGTCAA
* * * ** * * * *
3214595 ATCACGAGTTGGAAAATGAAAATGACCAGGATCA-AAATACGAGTTA
1 A--A--A-AT-GAAAATGACAAGGATTA-AACCATGAGT-C-A---A
* * * *
3214641 AAAAATGAAAACGACCAA-AATTAAAGCATGAGTCAG
1 AAA-ATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * ** * * * * *
3214677 AAAATGACAACGACTGGGACTAAACCTTAAGTGAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
*** * *
3214712 AAAATGAAAACCCCTAGGATTAAACCATGAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
*
3214747 AAAATG-AAA-G-CAATCGGGATTAAACGATGAGTCAA
1 AAAATGAAAATGACAA---GGATTAAACCATGAGTCAA
*** * *
3214782 AAAATGAAAAATGATTGGGATTATACCATGAGTAAA
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
* * * * * *
3214818 AAAATGAAAACGATCGA-CATTAAATCATAAGTAAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * * *
3214853 AAAATAAAAATGACAGGGACTAAA-CACTGCGTCAA
1 AAAATGAAAATGACAAGGATTAAACCA-TGAGTCAA
* *
3214888 AAAATGAAAACGAC-AGGATTAAAGCATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** * **
3214922 AAAATGTAAAACAACAGGGATTAAACCACAAGTCAA
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
* * * **
3214958 AAAGTGAAAATGAC-TGAGATTAAATCACAAGTCAA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* * * **
3214993 AAAATGAAAACGACCAA-AATTAAACGACAAGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* ** *
3215028 AAAATGAAAATGAC-CGGCATTAAATAACGAGTCAA
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
* * ** * *
3215063 AGAAATAAAAATGACTGAA--ATCAAATTATGAATCAG
1 A-AAATGAAAATGAC--AAGGATTAAACCATGAGTCAA
* *
3215099 AAAATTAAAATGACCAGGATTAAACCACT-AGTCAA
1 AAAATGAAAATGACAAGGATTAAACCA-TGAGTCAA
* * *
3215134 GAAATGAAAATAATCTAA--ATT-AATCATGAGTCAA
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* ** *
3215168 AAAATAAAAATGATCGAA--ATTAAATAATGAGTCTA
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* ** * * *
3215203 AAACTGAAAATGACCGGGATTAAATCACGAATCAGA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCA-A
* * * * *
3215239 AAACT-AAACTGATAGGGATTAAACCATGAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * ** *
3215273 AGAATGAAAATGATCGA-GATGAAAACACCAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* *** * * *
3215308 AAAATGAAAAACGATTGGGAATT-AACAACGAG-CTAG
1 AAAATG-AAAATGACAAGG-ATTAAACCATGAGTC-AA
* * *
3215344 AAAATG--AA-GACAATGGGGCA-TAAACCAGGAATTAGA
1 AAAATGAAAATGACAA---GG-ATTAAACCATGAGTCA-A
* * * * * * * * *
3215380 GAAATAAAAATGACCAGAATTAAATCACGATTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3215415 AAAATGAAAATGATAAGAATTAAGCCATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* **
3215450 AAAAT-AAAA--ACAACTGGATTAAATCACAAGTCAA
1 AAAATGAAAATGACAA--GGATTAAACCATGAGTCAA
* * * *
3215484 AAAATGAAAACGATCGA-GATTAAACCATGAATCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * *
3215519 AAAATAAAAATGACCCAA--ATTAAATCATGAGTCAG
1 AAAATGAAAATGA--CAAGGATTAAACCATGAGTCAA
* *
3215554 AAAATAAAAATGA-ACGGGATTAAACCAT-AGGTCAA
1 AAAATGAAAATGACA-AGGATTAAACCATGA-GTCAA
* * * * *
3215589 AAAATGAAAATGACTAGGATTAAACCTTGGGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * *
3215624 AGAATGAAAACGACCAA-GATTAAATCGTGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * ** * ** *
3215659 CAAATGAAAGTGA-TTGGTATTAAATCACAAGTCGGA
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTC-AA
* * * * * *
3215695 GAAATAAAAATGATCGA-GATTAAATCACGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * * * *
3215730 AAAATGAAAACGATCGA-GATTAAACTATGAGTTAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * * * * * *
3215765 AAAATGAAAACGATAATGA-AAATTACCA-AAATTAA
1 AAAATGAAAATGACAAGGATTAA--ACCATGAGTCAA
** * * * *
3215800 ATTATTGCTTAGAAAATGAAAATGATCGGGATAAAAACATGAGTTAA
1 A--A---AAT-GAAAATGACAAGGAT-----TAAA-CCATGAGTCAA
* * * *
3215847 AAAATGAAAACGACTGAA--ATTGAAGCATGAATCAA
1 AAAATGAAAATGAC--AAGGATTAAACCATGAGTCAA
* * * * * *
3215882 GAAATGAAAACGACTAGG-TCTAAACCTTGAGTGAG
1 AAAATGAAAATGACAAGGAT-TAAACCATGAGTCAA
** ** ** * *
3215917 AAAATGAAAACCACCGGGATTAAACCCCGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** *** *
3215952 AAAATGAAAGCGATTGGGATTAAACGATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* *
3215987 AAAATGAAAAATGACTAGGATTATACCATGAGTCAA
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
* *
3216023 AAAATGAAAATGAAAAGGATTAAATCATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3216058 AAAATAAAAATGACAAGGATTAAACAATGTGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * *
3216093 AAAATGAAAACGACAAGGATTAAAGCATGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* ** * * ** *
3216128 AGAATGTAAAACAACAGGGATTAAACTACAACTCAA
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
* ** *
3216164 AAAGTGAAAATGA-TTGAGATTAAACCATGAGTCAG
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* **
3216199 AAAATAAAAATGATC-A-GAGTTAAATGATGAGTCAA
1 AAAATGAAAATGA-CAAGGA-TTAAACCATGAGTCAA
* * *
3216234 AAAAAGAAAATGAC-CGGTATTAAATCATGAGTCAA
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
* *
3216269 AGAACGACCGAAAT--CAA--ATT--A-CA--AGTCAA
1 AAAATGA---AAATGACAAGGATTAAACCATGAGTCAA
* *
3216298 AAAATAAAAATGGCCAA-GATTAAACCACT-AGTCAA
1 AAAATGAAAAT-GACAAGGATTAAACCA-TGAGTCAA
* * * * * * *
3216333 GAAACGAAAATCATCGAA--ATTAAATCACGAGCCAT
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* * *
3216368 AAAATAAAAATGACCGAA--ATTAAATCATGACT-ATA
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCA-A
* * * *
3216403 AAATTGAAAATGACAGGGATTAAACCATAAATCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * *
3216438 AAAATTAAAATGACAGGGATTAAACCATGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * ** *
3216473 AGAATAAAAATGAC-CGAGATGAAACCACCAGTCAG
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
**
3216508 AAAATG--AA-GACAAAGGGGATTAAACCACAAGTCAGA
1 AAAATGAAAATGAC-AA--GGATTAAACCATGAGTCA-A
* * * * * * ** *
3216544 GAAAT-AAATTTGACCAGAACTAAATCACAAGTCAG
1 AAAATGAAA-ATGACAAGGATTAAACCATGAGTCAA
** * *
3216579 AAAATGAAAATGA-TGGGAATTAAACCAAGAATCAAA
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTC-AA
* * * *
3216615 AAAATG-AAACGATC-GGGATTAAATCC-CGCGTCAA
1 AAAATGAAAATGA-CAAGGATTAAA-CCATGAGTCAA
* * *
3216649 AAAAT-ATAAATAACTAGGA-TAAACCATGAGTCAG
1 AAAATGA-AAATGACAAGGATTAAACCATGAGTCAA
* * * * *
3216683 AAAATTAAAATGACCTA-GATTAAATCACGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * * *
3216718 AAAATAAAAATGACCAGGATTAAACCATGTGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * * *
3216753 AAAAT-AAGAACGA-ACCGAATTAAACCATGGGTTAG
1 AAAATGAA-AATGACA-AGGATTAAACCATGAGTCAA
* * * * **
3216788 AAAATGAAAACGATCGAGAATTAAATCACAAGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * * *
3216824 AAAATGAAAACGATC--GGTATTAAATCA-CAATCTAA
1 AAAATGAAAATGA-CAAGG-ATTAAACCATGAGTC-AA
* * * * *
3216859 AAATATAAAAATGATCAA-AATTAAATCACGAGTCAG
1 AAA-ATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * *
3216895 AAAATGAAAACGGTCAA-GATTAAACCAAGAGTCAA
1 AAAATGAAAA-TGACAAGGATTAAACCATGAGTCAA
** * * * * *
3216930 AAAATGAAAGCGATAATGA-AAATTACCA-GAATTAA
1 AAAATGAAAATGACAAGGATTAA--ACCATGAGTCAA
* * **
3216965 ATTACGAGTCAGAAAATGA-AA--A-T-GACCGGGA-TCAA
1 A--A--AAT--GAAAATGACAAGGATTAAACCATGAGTCAA
* * * * * ** * *
3217000 AATGTGAGTTAAAAAATGAAAACGATCAGAATTA-AAGCACAA
1 AA----A-AT-GAAAATGACAAGGATTA-AACCATGAG-TCAA
* * * * * * *
3217042 GTCAGAAAATGAAAACGACTAGGACTAAACCCTGAGTTAG
1 ---A-AAAT-GAAAATGACAAGGATTAAACCATGAGTCAA
** * *
3217082 AAAATGAAAACCACTAGGATTAAACCACGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** * **
3217117 AAAATGAGAGCT-ATCTA-GATTAAATGATGAGTC-A
1 AAAATGA-AAATGA-CAAGGATTAAACCATGAGTCAA
* * **
3217151 AAAATGAAAA--ACAACTGAGAATATACCACAAGTCAA
1 AAAATGAAAATGACAA--G-GATTAAACCATGAGTCAA
** * *
3217187 AAAATGAAAACAAC-CGAGATTAAATCATGAGTC-A
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* * *
3217221 AAAATAAAAATGACAAGGATTAAACAATGTGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * *
3217256 AAAATGAAAAAGATAGGGATTAAAGCACGAGTC-A
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * **
3217290 AAAATGTAAAA-CAAAGAGGATTAAACAACAAGTCAA
1 AAAATG-AAAATGACA-AGGATTAAACCATGAGTCAA
* *
3217326 AAAGTGAAAATGAC-CGAGATTAAACCATGAGT-AA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* *
3217360 GAAAATGAAAATGACCAA-AATTAAACAATGAGTCAA
1 -AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * *
3217396 AAAATGAAAATGAC-TGGCATTAAATCATGATTCAA
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
* * * ** *
3217431 AGAAATAAAAATGA-ACGATATTAAATTATGAAGCTGAGA
1 A-AAATGAAAATGACAAG-GATTAAACCATG-AG-TCA-A
* *
3217470 AAATTAAAAATGACAAGGATTAAACCACT-AGTCAGA
1 AAAATGAAAATGACAAGGATTAAACCA-TGAGTCA-A
** *
3217506 AACAA--AAACCGACCGAA--ATT-AATCATGAGTCAAA
1 AA-AATGAAAATGA-C-AAGGATTAAACCATGAGTC-AA
** * * **
3217540 AAAAT-AAAACTGATCCAAAAATTAAATCACGAGTCCT
1 AAAATGAAAA-TGA--CAAGGATTAAACCATGAGTCAA
* * **
3217577 AAAATTAATGCATGATTAGGATTAAACGCATGAGTCAAA
1 AAAATGAA--AATGACAAGGATTAAAC-CATGAGTC-AA
* * * ** *
3217616 AAAATTAAAACGACAAGGATTAAACAACAAATCAGA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCA-A
* * ** * *
3217652 GAAGTGAAAATGACCAA-GAAGAAACCAACT-TGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACC-A-TGAGTCAA
* * *
3217688 AAAATAAAAATTGATCAA-GATTAAACCACGAGT-TA
1 AAAATGAAAA-TGA-CAAGGATTAAACCATGAGTCAA
* * *
3217723 AAAATGAAGACA-AACAGGGGATTAAACCATGAGTTAGA
1 AAAATGAA-A-ATGACA-AGGATTAAACCATGAGTCA-A
* * * * *** *
3217761 GAAATAAAAACTGACCAGAATTATGTTCACGAG-CAA
1 AAAATGAAAA-TGACAAGGATTA-AACCATGAGTCAA
** *** * * *
3217797 AAAATGAAAACAATGGGGATTAAGCCACGAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* ** * ** *
3217832 AAAATGAAAATTAATCTGGGATTAAATCACAAGTCAT
1 AAAATGAAAA-TGA-CAAGGATTAAACCATGAGTCAA
** *
3217869 AAAATGAAAACCACCAAGGATTAAACTACT-A-TC-A
1 AAAATGAAAATGA-CAAGGATTAAACCA-TGAGTCAA
* * *** * *
3217903 AAAATAAAAATTACCCCTGATTAAAATGCAATGAGTCAG
1 AAAATGAAAATGA-CAAGGATT-AAA--CCATGAGTCAA
* ** * ** * * *
3217942 GAAATGAAAAATGACCGGGGTTAAATTACGGGTCAG
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
* * *
3217978 AAAATGAAAACGATCGA-GATTAAACCATGAGTTAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * ** *
3218013 AAATTG-AAA--ACAATTGAGATTAAATCACAAGTCTGA
1 AAAATGAAAATGACAA--G-GATTAAACCATGAGTC-AA
* ** *
3218049 AAAATGAAAATGATC--GGTATTAAATCACAAGCCAGA
1 AAAATGAAAATGA-CAAGG-ATTAAACCATGAGTCA-A
* * * * * *
3218085 GAAATAAAAATGATCAA-AATTAAATCACGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* *
3218120 AAAATGAAAACGATCAA-GATTAAACCATGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * * **
3218155 AAAACGAAAATGATAATGA--AAATGATTGAGATCAAA
1 AAAATGAAAATGACAAGGATTAAACCA-TGAG-TC-AA
* * * * * *
3218191 ACACAAGTTAAAAAAGAAAACGATCGTAATTAAAGCACGAGTCAG
1 A-A-AA--TGAAAATGACAA-G---G--ATTAAACCATGAGTCAA
*** * * * *
3218236 AAAATGAAAATGATTGGGACTTAATCCCTAAGTCAG
1 AAAATGAAAATGACAAGGA-TTAAACCATGAGTCAA
* ** * *
3218272 AAAATTAAAACCACCAA-AATTAAACCACGAGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * *
3218307 AAAATGAAAATGATC-GGGATTAAATCACT-TGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCA-TGAGTCAA
* * * * *
3218342 AAAATAAAAATGATAGGGATTAAACAACGACGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGA-GTCAA
* * * * * *
3218378 AAAATGAAAACGATAGGGATTAAAGCACGAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * **
3218413 AAAATGTAAAATAATAGGGATTAAACCACAAGTCAA
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
* * * *
3218449 AAAGTTAAAATGATCGA-GATTAAACCATGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * ** * *
3218484 AAAATGAAAAGGACTGAA--ACTAAATGACGACTCAAA
1 AAAATGAAAATGAC--AAGGATTAAACCATGAGTC-AA
* *
3218520 AAAATGAAAATGATC--GGCATTAAATCGTGAGTCAA
1 AAAATGAAAATGA-CAAGG-ATTAAACCATGAGTCAA
* * * * * * *
3218555 AAAAGTAAAAAGGATTGAA--ATCAAATCACGAGTCAC
1 AAAA-TGAAAATGA--CAAGGATTAAACCATGAGTCAA
* * *
3218591 AAAATGGAAATGACCATGATTAAACCACT-AGTCAA
1 AAAATGAAAATGACAAGGATTAAACCA-TGAGTCAA
* ** * * *
3218626 GAAACAAAAACGATCGAA--ATTAAATCATGAGTCTA
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* * * ** * *
3218661 AAAATAAAAATGATTGAA--ATTAAATCACAAATCTA
1 AAAATGAAAATGA--CAAGGATTAAACCATGAGTCAA
* * ** *
3218696 AAACTAAAAATGACTAA-GATTAAACCACAAGTTAA
1 AAAATGAAAATGAC-AAGGATTAAACCATGAGTCAA
* *
3218731 AAAAT-TAAATCGACAAGGATTAAACCATGAGTCAG
1 AAAATGAAAAT-GACAAGGATTAAACCATGAGTCAA
* * *** * * * *
3218766 ATAATGAGAATGATTGGGATGAAACCATTAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3218801 AAAATGAAAAATGATCGA-GATTAAACCACGAGTCAG
1 AAAATG-AAAATGA-CAAGGATTAAACCATGAGTCAA
* ** **
3218837 AAAATGAAGACAACGGGGATTAAACCATGAGTCAGA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCA-A
* * * * * *
3218873 GAAATAAAAATGACCAA-AATTAAATCACGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* ** ** *
3218908 AAAATGAAAACGA-TGGGAATTAAACCATTTGTGAA
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
* * * * *
3218943 AAAATGAAAACGAC-CGAGATTAAATCACGGGTCAA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* * *
3218978 AAAATAAAAACGACCAGGATTAAACCATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * *
3219013 AAAATGAAAATGACCAA-GATCAAAACATGAGTTAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * *
3219048 AAAATGAAAATGACCGAA--ATAAAAGCATGAGTCAG
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
** * * * * *
3219083 AAAATGAAAATGACTGGGACTAAACCCTAAGTGAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
*** * * * *
3219118 AAAATGAAAACCTCTAGGATTAAACCAGGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * *
3219153 AAAATAAAAATGATC-GGGATTAAACGATGAGTGAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* *
3219188 AAAATGCAAA-G-CAAACGGGATTATAACAAT-AGTC-A
1 AAAATGAAAATGAC-AA--GGATTA-AACCATGAGTCAA
* * * *
3219223 AAAAGGAAAAATGACTAGGATTAAATCACGAGTCAA
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
* * * * * * * ***
3219259 AAAATAAAAATGATAGGGATGAAACAACGTGTTGG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * ** * *
3219294 AAATTG-AAACGACTAA-GATTAATGCACGAGTCAG
1 AAAATGAAAATGAC-AAGGATTAAACCATGAGTCAA
** * *
3219328 AAAATGTAAAACCACAAGGATTAAACCACAAATTAG-AAA
1 AAAATG-AAAATGACAAGGATTAAA-C-C--ATGAGTCAA
* * * *
3219367 GTGAAAATGAAAATAAAATAGCGGGGATTATACCACGAGTCAA
1 ---AAAATGAAAATGACA-A----GGATTAAACCATGAGTCAA
* * * *
3219410 AAACTAAAAATGATCAA-AATTAAACAATGAGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * * *
3219445 AAAATGAAAATGACTAGCATTAAATCAGGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * *
3219480 AGAAATAAAAATGAC-AGGAATCAAATCA--CGTCAG
1 A-AAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
* * * *
3219514 AAAATAAAAATGATCGAA--ATTAAATCACGAGTCTA
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* ** ** *
3219549 AAACTGAAAACAACCCCGGATTAAAACCACGAGTC-A
1 AAAATGAAAATGA-CAAGGATT-AAACCATGAGTCAA
* * * *
3219585 AAAATTAAAATGATAGGGATTAAACCATGAGTCCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGT-CAA
* ** * * *
3219621 AGAATGAAAACAAC-CGAGATGAAACCATTTAGTCAA
1 AAAATGAAAATGACAAG-GATTAAACCA-TGAGTCAA
* *
3219657 AAAATGAAAAATGATC-GGGATTAAACCATGAGTCAG
1 AAAATG-AAAATGA-CAAGGATTAAACCATGAGTCAA
* * *
3219693 AAAA--CAAA-GACAATGGAGATTAAACCATGACTTAA
1 AAAATGAAAATGACAA--G-GATTAAACCATGAGTCAA
* * * *
3219728 AGAAAT-AAAATGACCAA-AAGTAAATCATGACTCAA
1 A-AAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
** *
3219763 AAAATGAAAATGA-TGGGAATTAAGCCATGAGTC-A
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
* * * * *
3219797 GAAATGAAAATGACAAGGATTAAATCACGAATTAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** *
3219832 AAAATGAAAAT-ACTAA-GATTAAACCACAAGTCAG
1 AAAATGAAAATGAC-AAGGATTAAACCATGAGTCAA
* * * *
3219866 AAAATAAAAACT-AC-TGGATTAAATCACGAGTCAA
1 AAAATGAAAA-TGACAAGGATTAAACCATGAGTCAA
* * *
3219900 AAAATGAAAACGACCAA--ACTAAA-AATGA-TCGCGATTA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGT--C-A--A
* * * *
3219937 AACCATGGGTTAGAAAATGAAAATGATTGATATTAAATCATGAGTCAA
1 AA--A----AT-GAAAATGACAAGGATT------AAACCATGAGTCAA
* ** *
3219985 AAAATGAAAATGATC--GGTATTAAATCACAAGCCAA
1 AAAATGAAAATGA-CAAGG-ATTAAACCATGAGTCAA
*
3220020 AGAAATAAAAATGATCGAA--ATTAAACCATGAGTCAA
1 A-AAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* **
3220056 AAAATGAAAACGATTTA-GATTAAACCATGAGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
** ** * *
3220091 AAAATGAAATGATAATGAAAATCACTAAAATTAAATTATGGGTTAA
1 AAAATG--A--A-AATG---A-CA--AGGATTAAACCATGAGTCAA
* * * * *
3220137 AAAATGAAAATGAC-TGAGATTAAAACGTTAGTTAA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
** * * * *
3220172 AAAATGAAAACAACCAA-AATTAGAGCATGAGTCAG
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* *** * * * * *
3220207 AAAATGAAAACGATTGGGACTGAACCCTGAGTGAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * *
3220242 AAAAT-----TCACCAGGATTAAACCACGAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
*
3220272 AAAATGAAAATGATCAA-GATTAAATCATGAGT-AA
1 AAAATGAAAATGA-CAAGGATTAAACCATGAGTCAA
* * * * * *
3220306 AAAA-AAAAATTACAGGGATTAAACAACA-CA-TTAG
1 AAAATGAAAATGACAAGGATTAAAC--CATGAGTCAA
* * * * *
3220340 AAAATGAAAACGACAGGGATTAAAGCATGAGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* *** **
3220375 AAAATGTAAAATAATTGGGATTAAACCACAAGTCAA
1 AAAATG-AAAATGACAAGGATTAAACCATGAGTCAA
* * ** * * *
3220411 AAACTAAAAATGA-TTGAGATTAAACCACGAATCAG
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* ** * * ** *
3220446 AAAATGAGAACAACTAGAATTAAATGACGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3220481 AAAATGAAAATGAC-TGACATTAAATCATGAGTCAA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* * * *
3220516 AGAAA-GAAAAATGACTAA-AATCAAATCATGAGCCAA
1 A-AAATG-AAAATGAC-AAGGATTAAACCATGAGTCAA
**
3220552 AAAATGAAAATG--ATTGAGTTAAACCACT-AGTCAA
1 AAAATGAAAATGACAAGGA-TTAAACCA-TGAGTCAA
* ** * ** *
3220586 GAAATGAAAACAACCACAATTAAATCATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * *
3220621 AAAATAAAAATGACCGAA--ATTAAATCATGAGTCTA
1 AAAATGAAAATGA-C-AAGGATTAAACCATGAGTCAA
* ** *** **
3220656 AAATTGAAAACAATTGGGATTAAACCACAAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * *
3220691 AAAATTAAAACGATAGGGATTAAACCATGAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* * * * **
3220726 AGAATGAAAATGA-TAGAAATGAAACCACCAGTCAA
1 AAAATGAAAATGACAAG-GATTAAACCATGAGTCAA
* * * * *
3220761 AAAATGAAAAATGATC-TGGATTAAACCGTGTGACAG
1 AAAATG-AAAATGA-CAAGGATTAAACCATGAGTCAA
** * ** *
3220797 AAAATGAAGGTAATGAGGATTAAACCA-CATGTCAGA
1 AAAATGAAAATGACAAGGATTAAACCATGA-GTCA-A
* ** ** * ** *
3220833 GAAACAAAAATGATGAGAATTAAACCACAAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
** *
3220868 AAAATGAAAATGA-TGGGAATTAAACCATGAGTCAG
1 AAAATGAAAATGACAAGG-ATTAAACCATGAGTCAA
* *
3220903 AAAATGAAAATGAC-TGGATTAAATCATGAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* *
3220937 AAAATGAAAATGACCAGGATTAAACCATGAGTCAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
* ** * * **
3220972 AAAATAAAAATGACTTGAATTAAATCACAAGTCAA
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
*
3221007 AAAATGAAAATGATC-GGGATTAAACCAT-AGGTCAA
1 AAAATGAAAATGA-CAAGGATTAAACCATGA-GTCAA
* * * *
3221042 AAAATGAAAATGACTAGGATTAAACCATGGGTTAG
1 AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
3221077 AAAATGAAAATGAC
1 AAAATGAAAATGAC
3221091 CGATATTAAA
Statistics
Matches: 8505, Mismatches: 2407, Indels: 1790
0.67 0.19 0.14
Matches are distributed among these distances:
26 8 0.00
27 8 0.00
29 32 0.00
30 49 0.01
31 13 0.00
32 37 0.00
33 113 0.01
34 705 0.08
35 5064 0.60
36 1606 0.19
37 199 0.02
38 116 0.01
39 62 0.01
40 79 0.01
41 119 0.01
42 50 0.01
43 36 0.00
44 39 0.00
45 22 0.00
46 71 0.01
47 32 0.00
48 19 0.00
49 12 0.00
50 5 0.00
51 4 0.00
52 4 0.00
53 1 0.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (35 bp):
AAAATGAAAATGACAAGGATTAAACCATGAGTCAA
Found at i:3209536 original size:176 final size:176
Alignment explanation
Indices: 3209249--3209682 Score: 437
Period size: 176 Copynumber: 2.5 Consensus size: 176
3209239 TACTGCTTAG
* * * * * * * * *
3209249 AAAATGAAAATGATCGGGATAAAAACATGAGTTAAAAAATGAAAACGACTGAAATTAAAGCATGA
1 AAAATGAAAATGATAGAGATTAAACCATGAGTCAAAAAATGAAAATGACAGAGATTAAATCATGA
* * * * * ** * * **
3209314 ATCAAGAAATGAAAACGACTAGGACTAAACCTTGAGTGAGAAAATGAAAACCACCGGGATTAAAC
66 GTCAAAAAATAAAAATGACAAGGACTAAACAATGAGTCAAAAAATGAAAACCACAAGGATTAAAC
* * ** ** *
3209379 CAGGAGTTAGAAAATG-AAAGCGATTGGGATTAAACGATGAGTCAA
131 CAGGAGTTAGAAAATGTAAAACAACAGGGATTAAACGACAACTCAA
* *
3209424 AAAATGAAAAATGACTAG-GATTATACCATGAGTCAAAAAATGAAAATGACAGGGATTAAATCAT
1 AAAATG-AAAATGA-TAGAGATTAAACCATGAGTCAAAAAATGAAAATGACAGAGATTAAATCAT
* * *
3209488 GAGTCAAAAAATAAAAATGACAAGGATTAAACAATGCGTCAAAAAATGAAAACGACAAGGATTAA
64 GAGTCAAAAAATAAAAATGACAAGGACTAAACAATGAGTCAAAAAATGAAAACCACAAGGATTAA
* * * *
3209553 AGCATGAGTTAGAGAATGTAAAACAACAGGGATTAAACTACAACTCAA
129 ACCAGGAGTTAGAAAATGTAAAACAACAGGGATTAAACGACAACTCAA
* * * * *
3209601 AAAGTGAAAATGATTGAGATTAAACCATGAGTCAGAAAATAAAAATGATCAGAG-TTAAATGATG
1 AAAATGAAAATGATAGAGATTAAACCATGAGTCAAAAAATGAAAATGA-CAGAGATTAAATCATG
3209665 AGTC-AAAAA-AAAAATGAC
65 AGTCAAAAAATAAAAATGAC
3209683 CGGTATTAAA
Statistics
Matches: 212, Mismatches: 42, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
174 9 0.04
175 13 0.06
176 158 0.75
177 32 0.15
ACGTcount: A:0.51, C:0.11, G:0.19, T:0.19
Consensus pattern (176 bp):
AAAATGAAAATGATAGAGATTAAACCATGAGTCAAAAAATGAAAATGACAGAGATTAAATCATGA
GTCAAAAAATAAAAATGACAAGGACTAAACAATGAGTCAAAAAATGAAAACCACAAGGATTAAAC
CAGGAGTTAGAAAATGTAAAACAACAGGGATTAAACGACAACTCAA
Found at i:3209679 original size:33 final size:34
Alignment explanation
Indices: 3209619--3209704 Score: 104
Period size: 33 Copynumber: 2.5 Consensus size: 34
3209609 AATGATTGAG
* *
3209619 ATTAAACCATGAGTCAGAAAATAAAAATGATCAG-
1 ATTAAATCATGAGTCA-AAAATAAAAATGACCAGT
* *
3209653 AGTTAAATGATGAGTCAAAAA-AAAAATGACCGGT
1 A-TTAAATCATGAGTCAAAAATAAAAATGACCAGT
3209687 ATTAAATCATGAGTCAAA
1 ATTAAATCATGAGTCAAA
3209705 GAACGACCGA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
33 26 0.58
34 6 0.13
35 13 0.29
ACGTcount: A:0.51, C:0.10, G:0.16, T:0.22
Consensus pattern (34 bp):
ATTAAATCATGAGTCAAAAATAAAAATGACCAGT
Found at i:3210694 original size:104 final size:106
Alignment explanation
Indices: 3210566--3210805 Score: 274
Period size: 104 Copynumber: 2.3 Consensus size: 106
3210556 GAGAGCTATC
* * * *
3210566 GAGATTAAACGATGAGTCAGAAAATGAAAAAAATTGAGAATATACCACAAGTCAAAAAATG-AAA
1 GAGATTAAACAATGAGTCAAAAAATGAAAAAAATAGAGAATAAACCACAAGTCAAAAAATGTAAA
* *
3210630 ACAACCGA-GATTAAATC-ACGAGTCAAAAA-TAAAAATGACA
66 ACAA-AGAGGATTAAA-CAACAAGTCAAAAAGTAAAAATGACA
* * * * * * *
3210670 GGGATTAAACAATGTGTCAAAAAATGAAAAAGATAGGGATTAAAGCACGAGTCAAAAAATGTAAA
1 GAGATTAAACAATGAGTCAAAAAATGAAAAAAATAGAGAATAAACCACAAGTCAAAAAATGTAAA
* *
3210735 ACAAAGAGGATTAAACAACAAGTCAAAAAGTGAAAATGACC
66 ACAAAGAGGATTAAACAACAAGTCAAAAAGTAAAAATGACA
*
3210776 GAGATTAAACCATGAGT-AAGAAAATGAAAA
1 GAGATTAAACAATGAGTCAA-AAAATGAAAA
3210806 TGACCAAAAT
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
104 53 0.47
105 27 0.24
106 33 0.29
ACGTcount: A:0.55, C:0.11, G:0.18, T:0.16
Consensus pattern (106 bp):
GAGATTAAACAATGAGTCAAAAAATGAAAAAAATAGAGAATAAACCACAAGTCAAAAAATGTAAA
ACAAAGAGGATTAAACAACAAGTCAAAAAGTAAAAATGACA
Found at i:3210840 original size:141 final size:139
Alignment explanation
Indices: 3210464--3215317 Score: 1044
Period size: 141 Copynumber: 34.4 Consensus size: 139
3210454 AACGGTCGGA
* * * * * * * **
3210464 ATTAAAGCACAAGTCAGAAAATGAAAACGACTGGGACTAAACCCTGAGTTAGAAAATGAAAACCA
1 ATTAAACCACAAGTCA-AAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATGA
* * * *** * *
3210529 -CTAGGATTAAACCATGAGTCAAAAAATGAGAGCTATCGAGATTAAA-CGATGAGTCAGAAAATG
65 CCGA-AATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATC-ACGAGTCAAAAAATG
* *
3210592 AAAAAAATTGA-G
128 AAAACAA-CGAGG
* * ** * * *
3210604 AATATACCACAAGTCAAAAAATGAAAACAACCGAGATTAAATCACGAGTCA-AAAATAAAAATGA
1 ATTAAACCACAAGTC-AAAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATGA
* ** * * * * *
3210668 CAGGGATTAAACAATGTGTCAAAAAATGAAAAAGATAGGGATTAAAGCACGAGTCAAAAAATGTA
65 CCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATCACGAGTCAAAAAATG-A
*
3210733 AAACAAAGAGG
129 AAACAACGAGG
* *
3210744 ATTAAACAACAAGTCAAAAAGTGAAAATGACCGAGATTAAACCATGAGTAAGAAAATGAAAATGA
1 ATTAAACCACAAGTCAAAAA-TGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATGA
* * * *
3210809 CCAAAATTAAACGATGAGTCAAAAAATGAAAATGA-CTG-GCATTAAATCATGAGTCAAAGAAAT
65 CCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATC-GAG-ATTAAATCACGAGTCAAA-AAAT
* * * *
3210872 AAAAATGATCGA-A
127 GAAAA-CAACGAGG
** ** * *
3210885 ATTAAATTATGAGTGAGAAAATTAAAATGACC-AGGATTAAACCACT-AGTCAAGAAACA--AAA
1 ATTAAACCACAAGTCA-AAAATGAAAATGACCGA-GATTAAACCA-TGAGTC-AGAAA-ATGAAA
* * * * *
3210946 ACGACCGAAATT-AATCATGAGTCAAAAAAT-AAAAATGATCAAAATTAAATCACGAGTCTAAAA
61 ATGACCGAAATTAAACCATGAGTCAAAAAATGAAAAA-GATCGAGATTAAATCACGAGTCAAAAA
* * ** **
3211009 CTGAGAATGATTAGG
125 ATGAAAACAACGAGG
** * * * * ** * *
3211024 ATTAAACCATGAGTCAAAAAATTAAAACGA-CAAGGATTAAACAACAAATCAGAGAATGAAAATG
1 ATTAAACCACAAGTC-AAAAATGAAAATGACCGA-GATTAAACCATGAGTCAGAAAATGAAAATG
* * * * *
3211088 ACC-AAGATGAAACCACT-AGTCAGAAAATGAAAAATGATCAAGATTAAACCATGAGTCAAAAAA
64 ACCGAA-ATTAAACCA-TGAGTCAAAAAATGAAAAA-GATCGAGATTAAATCACGAGTCAAAAAA
* *
3211151 TGAAGACAACGGGG
126 TGAAAACAACGAGG
* * * * * * *
3211165 ATTAAACCACGAGTTAGAGAAATAAAAATGACC-AGAATTAAATCACGAGTCAAAAAATGAAAAC
1 ATTAAACCACAAGTCA-A-AAATGAAAATGACCGAG-ATTAAACCATGAGTCAGAAAATGAAAAT
* ** * * * * ** * * *
3211229 AATGGGAATTAAGCCACGAGTCAGAAAATGAAAATTATCGGGATTAAATCACAAGTCATAAAATG
63 GACCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATCACGAGTCAAAAAATG
* *
3211294 AAAACCACCAGG
128 AAAACAACGAGG
* * * * ** **
3211306 ATTAAACTACGTA-TCAAAAAATAAAAATTACCCTGATTAAATGATGAGTCAGAAAATGAAAATG
1 ATTAAACCAC-AAGTC-AAAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATG
*** ** * * * * * * * * *
3211370 ACCGGGGTTAAATTATGGGTCAGAAAATGAAAACGACCGAGATTAAACCATGGGTTAGAAAATGA
64 ACCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATCACGAGTCAAAAAATGA
3211435 AAACAATCGA-G
129 AAACAA-CGAGG
* * * * ** * *
3211446 ATTAAATCACAAGTCTGAAAAATGAAAACGATCG-GTATTAAATCACAAGCCAGAGAAATAAAAA
1 ATTAAACCACAAGTC--AAAAATGAAAATGACCGAG-ATTAAACCATGAGTCAGA-AAATGAAAA
* * * * * * * * *
3211510 TGATCAAAATTAAATCACGAGTCAGAAAATGAAAACGATCAAGATTAAACCATGAGTCAAAAAAT
62 TGACCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATCACGAGTCAAAAAAT
* * **
3211575 GAAAATGATAATGAAA
127 G-AAA--ACAACGAGG
** * * * * ** * *
3211591 ATTATCAAAATTAAATTATGAGTCAGAAAATGAAAATGACTGAGATCAAAACACAAGTTAAAAAA
1 A-T-T--AAA--CCA-CA--AGTCA-AAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAA
** * * * * * * * * * *
3211656 AAAAAACGACCGTAATTAAAGCACGAGTCAGAAAATGAAAATGATTGGGACTT-AATCCCTAAGT
56 TGAAAATGACCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGA-TTAAATCAC-GAGT
* * * * *
3211720 CAGAAAATTAAAACCACCAGA
119 CAAAAAATGAAAACAACGAGG
* * * * * * *
3211741 ATTAAACCACGAGTCAAAAAATGAAAATGATCGGGATTAAATCACGAGTCAAAAAATAAAAATGA
1 ATTAAACCACAAGTC-AAAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATGA
** ** * * * * * * *
3211806 TAGGGATTAAACAACGCGTCAAAAAATGAAAACGATAGGGATTAAAGCACGAGTCAAAAAATGTA
65 CCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATCACGAGTCAAAAAATG-A
* * *
3211871 AAATAATGGGG
129 AAACAACGAGG
* * *
3211882 ATTAAACCACAAGTCAAAAAGTTAAAATGATCGAGATTAAACCATGAGTCAGAAAATGAAAAGGA
1 ATTAAACCACAAGTCAAAAA-TGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATGA
* ** * * * * *
3211947 CTGAAATTAAATGACGACTCAAAAAATGAAAATGATCG-GCATTAAATCATGAGTCAAAAAAGTA
65 CCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGAG-ATTAAATCACGAGTCAAAAAA-TG
* * *
3212011 AAAAGGATCGA-A
128 AAAA-CAACGAGG
* * * * *
3212023 ATCAAATCACGAGTCACAAAATGAAAATGACCGTGATTAAACCCCT-AGTCAAGAAACA--AAAA
1 ATTAAACCACAAGTCA-AAAATGAAAATGACCGAGATTAAA-CCATGAGTC-AGAAA-ATGAAAA
* * * * * * * * * *
3212085 CGATCGAAATTAAATCATGAGTCTAAAAAT-AAAAATGATTGAAATTAAATCACAAATCTAAAAC
62 TGACCGAAATTAAACCATGAGTCAAAAAATGAAAAA-GATCGAGATTAAATCACGAGTCAAAAAA
** * *
3212149 TGAAAATGACTAAG
126 TGAAAACAACGAGG
* * * *
3212163 ATTAAACCACAAGTCAAAAAAT-TAAATCGA-CAAGGATTAAACCATGAGTCAGAGAATGAGAAT
1 ATTAAACCACAAGTC-AAAAATGAAAAT-GACCGA-GATTAAACCATGAGTCAGAAAATGAAAAT
** ** * * * * * *
3212226 GATTGGGATGAAACCATTAGTTAGAAAATGAAAAATGATCGAGATTAAACCACGAGTCAGAAAAT
63 GACCGAAATTAAACCATGAGTCAAAAAATGAAAAA-GATCGAGATTAAATCACGAGTCAAAAAAT
* *
3212291 GAAGACAACGGGG
127 GAAAACAACGAGG
** * * * * * *
3212304 ATTAAACCATGAGTCAGAGAAATAAAAATGACCAAAATTAAATCACGAGTCAGAAAATGAAAACG
1 ATTAAACCACAAGTCA-A-AAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATG
** * ** * * * *
3212369 ATGGGAATTAAACCATTTGTCAAAAAATGAAAACGACCGAGATTAAATCACGGGTCAAAAAATAA
64 ACCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATCACGAGTCAAAAAATGA
* *
3212434 AAACGACCAGG
129 AAACAACGAGG
** * * *
3212445 ATTAAACCATGAGTCAAAAAATGAAAATGACC-AGGATCAAAACATGAGTTAGAAAATGAAAATG
1 ATTAAACCACAAGTC-AAAAATGAAAATGACCGA-GATTAAACCATGAGTCAGAAAATGAAAATG
* ** * * * * * * * *
3212509 ATCGAAATTAAAGAATGAGTCAGAAAATGAAAATGA-CTGGGACTAAA-CCCTAAGTGAGAAAAT
64 ACCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATC-GAGATTAAATCAC-GAGTCAAAAAAT
** *
3212572 GAAAACCTCTAGG
127 GAAAACAACGAGG
** * * * * * *
3212585 ATTAAACCAGGAGTTAGAAAATAAAAATGATCGGGATTAAACGATGAGTCAAAAAATGAAAA-GC
1 ATTAAACCACAAGTCA-AAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATG-
** * * * *
3212649 AGCCGGGATTATAACAAT-AGTCAAAAAA-CAAAAATGA-CCAGGATTAAATCACGGGTCAAAAA
64 A-CCGAAATTA-AACCATGAGTCAAAAAATGAAAAA-GATCGA-GATTAAATCACGAGTCAAAAA
* *
3212711 ATAAAAATGATA-G-GG
125 ATGAAAA-CA-ACGAGG
* * ** ** * * ** ** * *
3212726 ATGAAACAACGCGTTGGAAATTG-AAACGACTAAGATTAATGCACGAGTCAGAAAATGTAAAA-C
1 ATTAAACCACAAG-TCAAAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATG-AAAATG
* ** * * * * *
3212789 AAC-AAGGATTAAACCACAAATCAGAAAGTGAAAATGAAAATAAAATAGCGGGGATTATACCACG
64 ACCGAA--ATTAAACCATGAGTC---AA---AAAATG-AAA-AAGAT--C-GAGATTAAATCACG
* *
3212853 AGTCAAAAACT---AA-AA--ATG
116 AGTCAAAAAATGAAAACAACGAGG
* * * * * * * *
3212871 A-T----CA-AAATTAAACGATGAAAATGA-CTAGCATTAAATCACGAGTCAAAGAAATAAAAAT
1 ATTAAACCACAAGTCAAA-AATGAAAATGACCGAG-ATTAAACCATGAGTCAGA-AAATGAAAAT
* * * * * * * * *
3212929 GACAGGAATCAAATCA-CA-TCAGAAAAT-AAAAATGATCGAAATTAAATCACGAGTCTAAAACT
63 GACCGAAATTAAACCATGAGTCAAAAAATGAAAAA-GATCGAGATTAAATCACGAGTCAAAAAAT
* *
3212991 AAAAACAAC-CGG
127 GAAAACAACGAGG
* * ** * * * **
3213003 ATTAAACCACGAGTCAAAAAATTAAAATGATAGGGATTAAACCACGAGTCAGAGAATGAAAACAA
1 ATTAAACCACAAGTC-AAAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATGA
* * * * * * *
3213068 CCGAGATGAAACCATTAGTCAGAAAATGAAAAATGATCGGGATTAAACCATGAGTCAAAAAAT-A
65 CCGAAATTAAACCATGAGTCAAAAAATGAAAAA-GATCGAGATTAAATCACGAGTCAAAAAATGA
3213132 AAGACAACG-GAG
129 AA-ACAACGAG-G
** * * * * * * *
3213144 ATTAAACCATGACTCAAAGAAATAAAAATGACCAAAAGTAAATCATGAGTCAAAAAATGAAAATG
1 ATTAAACCACAAGTC-AA-AAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATG
** * * * *
3213209 ATTGGAATTAAGCCATGAGTC-AGAAATGAAAATGA-CAGAGATTAAATCACGAGTCAAAAAATG
64 ACCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATC-GAGATTAAATCACGAGTCAAAAAATG
* * *
3213272 AAAACGACTAAG
128 AAAACAACGAGG
* * * * * *
3213284 ATTAAACCACGAGTCAGAAAATAAAAACT-ACCTG-GATTAAATCAAGAGTCAAAAAATGAAAAC
1 ATTAAACCACAAGTCA-AAAATGAAAA-TGACC-GAGATTAAACCATGAGTCAGAAAATGAAAAT
* * * * *
3213347 GACCAAACTGATAATGATCGCTATTAAACCATGGGTTAGAAAATGAAAATGATCGATATTAAATC
63 GA-C---C-G---A--A-----ATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATC
* * * *
3213412 ATGAGTCAAAAAATGAAAATGATCG-GT
113 ACGAGTCAAAAAATGAAAA-CAACGAGG
* * * * * * * * *
3213439 ATTAAATCACAAGCCAAAGAACTAAAAATGATCGAAATTAAATCACGAGTCAAAAAATGAAAACG
1 ATTAAACCACAAGTCAAA-AA-TGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATG
*** * * * * *
3213504 ATTTAGATTAAACCATGAGTCAAAAAACAAAAATGATAATGAAAATTACTAGAATTAAATTACGG
64 ACCGAAATTAAACCATGAGTC-----A-AAAAATGA-AA--AAGA-T-CGAG-ATTAAATCACGA
* * *
3213569 GTCAAAAAATAAAAATGATCGA-G
117 GTCAAAAAATGAAAA-CAACGAGG
* ** * ** * * * * *
3213592 ATTAAAACATGAGTTAAAAAATGAAAACAACCAAAATTAGAGCATGAGTCAGAAAATGAAAACGA
1 ATTAAACCACAAG-TCAAAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATGA
** ** * * * * ** ** * * *
3213657 TTGGGATTGAACCCTGAGTGAGAAAAT--TCACCA--G-GATTAAACCACAAGTCAGAAAATGAA
65 CCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATCACGAGTCAAAAAATGAA
* *
3213717 AATGATCGA-G
130 AA-CAACGAGG
* ** * * * * * * *
3213727 ATTAAATCATGAGTCAAAAAATAAAAATTACAGGGATTAAACAACA-CA-TTAGAAAATGAAAAC
1 ATTAAACCACAAGTC-AAAAATGAAAATGACCGAGATTAAAC--CATGAGTCAGAAAATGAAAAT
* ** * * * * * * * *
3213790 GACAGGGATTAAAGCACGAGTTAGAAAATGTAAAATA-ATCGGGATTAAACCACAAGTCAAAAAC
63 GACCGAAATTAAACCATGAGTCAAAAAATG-AAAA-AGATCGAGATTAAATCACGAGTCAAAAAA
* **
3213854 TGAAAATGATTGA-G
126 TGAAAA-CAACGAGG
* * * * * ** * *
3213868 ATTAAACCACGAGTCAGAAAATGAGAA-CAACTAGAATTAAATGACGAGTCAAAAAATGAAAATG
1 ATTAAACCACAAGTCA-AAAATGAAAATGACCGAG-ATTAAACCATGAGTCAGAAAATGAAAATG
* * * * * * * *
3213932 ACTGACATTAAATCATGAGTCAAAGAAA-GAAAAATGA-CTAAAATCAAATCATGAGCCAAAAAA
64 ACCGAAATTAAACCATGAGTCAAA-AAATGAAAAA-GATC-GAGATTAAATCACGAGTCAAAAAA
* *
3213995 T--AAA-AATGATTG
126 TGAAAACAACGA-GG
* * * ** * * * *
3214007 AGTTAAGCCACTACTCAAGAAATGAAAACAACC-ATAATTAAATCATGAGTTAGAAAATAAAAAT
1 A-TTAAACCACAAGTCAA-AAATGAAAATGACCGA-GATTAAACCATGAGTCAGAAAATGAAAAT
* * * ** * * *
3214071 GACCGAAATTAAATCACGAGTCTAAATTTGAAAACA-ATTGGGATTAAACCACGAGTCAAAAAAT
63 GACCGAAATTAAACCATGAGTCAAAAAATGAAAA-AGATCGAGATTAAATCACGAGTCAAAAAAT
*
3214135 TAAAACGATA-G-GG
127 GAAAAC-A-ACGAGG
** * ** * * * ** *
3214148 ATTAAACCATGAGCCAGGGAATGAAAATGACAGAAATGAAACCACCAGTCAAAAAATGAAAAATG
1 ATTAAACCACAAGTCA-AAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATG-AAAATG
* * * * * ** * * * *
3214213 A--TAAGGATTAAACCGTGGGACAGAAAATGAAGGTA-ATAGGGATTAAACCAC-ATGTCAGAGA
64 ACCGAA--ATTAAACCATGAGTCAAAAAATGAA-AAAGATCGAGATTAAATCACGA-GTCA-AAA
** ** * *
3214274 AACAAAAATGATGAGA
124 AATGAAAACAACGAGG
* * *
3214290 ACTAAACCACAAGTCAGAAAATGAAAATGA-TGGGAATTAAACCATGAGTCAGAAAATGAAAATG
1 ATTAAACCACAAGTCA-AAAATGAAAATGACCGAG-ATTAAACCATGAGTCAGAAAATGAAAATG
** * * * * * * * * *
3214354 ATTG-GATTAAATCACGAGTCAGAAAATGAAAATGA-CCAGGATTAAACCATGAGTCAGAAAAT-
64 ACCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGA-GATTAAATCACGAGTCAAAAAATG
*
3214416 -AAA-AATGA--
128 AAAACAACGAGG
* * * * * * *
3214424 CTT------GAA-T--TAAATGAAAACGACCGGGATTAAACCATGGGTCAAAAAATGAAAATGA-
1 ATTAAACCACAAGTCAAAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATGAC
* * * * * * * * * *
3214479 CTAGGATTAAACCCTGGGTTAGAAAATGAAAATGACCGATATTAAATTACGAGTCAAAAAATGAA
66 CGA-AATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATCACGAGTCAAAAAATGAA
* * *
3214544 AATGATCG-GT
130 AA-CAACGAGG
** * * * * * * * **
3214554 ATTAAATAACAAGCCAGAGAAATAAAAAAGATCGAAATTAAATCACGAGTTGGAAAATGAAAATG
1 ATTAAACCACAAGTCA-A-AAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATG
* * ** * * * * * * * * *
3214619 ACC-AGGATCAAAATACGAGTTAAAAAATGAAAACGACCAAAATTAAAGCATGAGTCAGAAAATG
64 ACCGA-AATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATCACGAGTCAAAAAATG
* *
3214683 ACAACGACTG-GG
128 AAAACAAC-GAGG
* ** * ** * ***
3214695 ACTAAACCTTAAGTGAGAAAATGAAAA-CCCCTAGGATTAAACCATGAGTCAGAAAATGAAAGCA
1 ATTAAACCACAAGTCA-AAAATGAAAATGACCGA-GATTAAACCATGAGTCAGAAAATGAAAATG
* ** * * * * * * *
3214759 ATCGGGATTAAACGATGAGTCAAAAAATGAAAAATGATTGGGATTATACCATGAGTAAAAAAATG
64 ACCGAAATTAAACCATGAGTCAAAAAATGAAAAA-GATCGAGATTAAATCACGAGTCAAAAAATG
* *
3214824 AAAACGATCGA-C
128 AAAAC-AACGAGG
* * * * * * * * * *
3214836 ATTAAATCATAAGTAAAAAAATAAAAATGACAGGGACTAAA-CACTGCGTCAAAAAATGAAAACG
1 ATTAAACCACAAGT-CAAAAATGAAAATGACCGAGATTAAACCA-TGAGTCAGAAAATGAAAATG
* * * * * * * * * *
3214900 ACAG-GATTAAAGCATGAGTCAAAAAATGTAAAACAACAGGGATTAAACCACAAGTCAAAAAGTG
64 ACCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATC-GAGATTAAATCACGAGTCAAAAAATG
**
3214964 AAAATGACTGA-G
128 AAAACAAC-GAGG
* * * * * ** *
3214976 ATTAAATCACAAGTCAAAAAATGAAAACGACCAAAATTAAACGACAAGTCAAAAAATGAAAATGA
1 ATTAAACCACAAGTC-AAAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATGA
** ** * * * * * * *
3215041 CCGGCATTAAATAACGAGTCAAAGAAAT-AAAAATGA-CTGAAATCAAATTATGAATCAGAAAAT
65 CCGAAATTAAACCATGAGTCAAA-AAATGAAAAA-GATC-GAGATTAAATCACGAGTCAAAAAAT
* ** *
3215104 TAAAATGACCAGG
127 GAAAACAACGAGG
* * * * * * * *
3215117 ATTAAACCACTAGTCAAGAAATGAAAATAATCTAAATT-AATCATGAGTCAAAAAATAAAAATGA
1 ATTAAACCACAAGTCAA-AAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATGA
* ** * * * * * * *
3215181 TCGAAATTAAATAATGAGTCTAAAACTGAAAATGACCGGGATTAAATCACGAATCAGAAAACT--
65 CCGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATCACGAGTCA-AAAAATGA
3215244 AAACTGATA-G-GG
129 AAAC--A-ACGAGG
** * * * * **
3215256 ATTAAACCATGAGTCAGAGAATGAAAATGATCGAGATGAAAACACCAGTCAGAAAATGAAAA
1 ATTAAACCACAAGTCA-AAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAA
3215318 ACGATTGGGA
Statistics
Matches: 3449, Mismatches: 982, Indels: 566
0.69 0.20 0.11
Matches are distributed among these distances:
124 39 0.01
125 47 0.01
126 2 0.00
127 24 0.01
128 3 0.00
129 4 0.00
130 9 0.00
131 2 0.00
132 7 0.00
133 1 0.00
134 2 0.00
135 95 0.03
136 8 0.00
137 29 0.01
138 47 0.01
139 297 0.09
140 987 0.29
141 1116 0.32
142 330 0.10
143 18 0.01
144 5 0.00
145 7 0.00
146 15 0.00
147 9 0.00
148 10 0.00
149 7 0.00
150 7 0.00
151 22 0.01
152 103 0.03
153 79 0.02
154 22 0.01
155 57 0.02
156 39 0.01
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (139 bp):
ATTAAACCACAAGTCAAAAATGAAAATGACCGAGATTAAACCATGAGTCAGAAAATGAAAATGAC
CGAAATTAAACCATGAGTCAAAAAATGAAAAAGATCGAGATTAAATCACGAGTCAAAAAATGAAA
ACAACGAGG
Found at i:3211018 original size:104 final size:105
Alignment explanation
Indices: 3210779--3211227 Score: 307
Period size: 106 Copynumber: 4.3 Consensus size: 105
3210769 AATGACCGAG
* * * ** * ** *
3210779 ATTAAACCATGAGTAAGAAAATGAAAATGACCAAAATTAAACGATGAGTCAAAAAATGAAAATGA
1 ATTAAATCACGAGTGAGAAAATGAAAATGACCAGGATTAAACCATGAGTCAAAAAACAAAAACGA
* ** *
3210844 CTGGCATTAAATCATGAGTCAAAGAAATAAAAATGATCGAA
66 CCGAAATT-AATCATGAGTCAAAGAAATAAAAATGATCAAA
* * * *
3210885 ATTAAATTATGAGTGAGAAAATTAAAATGACCAGGATTAAACCACT-AGTCAAGAAACAAAAACG
1 ATTAAATCACGAGTGAGAAAATGAAAATGACCAGGATTAAACCA-TGAGTCAAAAAACAAAAACG
3210949 ACCGAAATTAATCATGAGTCAAA-AAATAAAAATGATCAAA
65 ACCGAAATTAATCATGAGTCAAAGAAATAAAAATGATCAAA
* * * ** **
3210989 ATTAAATCACGAGTCTA-AAACTGAGAATGATTAGGATTAAACCATGAGTCAAAAAATTAAAACG
1 ATTAAATCACGAGT-GAGAAAATGAAAATGACCAGGATTAAACCATGAGTCAAAAAACAAAAACG
* ** * * * * *
3211053 A-C-AAGGATTAAACAACAAATCAGAG-AATGAAAATGACCAAG
65 ACCGAA--ATTAATC-ATGAGTCAAAGAAATAAAAATGATCAAA
* * * * * * ** * *
3211094 ATGAAACCACTAGTCAGAAAATGAAAAATGATCAAGATTAAACCATGAGTCAAAAAATGAAGACA
1 ATTAAATCACGAGTGAGAAAATG-AAAATGACCAGGATTAAACCATGAGTCAAAAAACAAAAACG
* ** * * * * * *
3211159 ACGGGGATTAAACCACGAGTTAGAGAAATAAAAATGACCAGA
65 ACCGAAATT-AATCATGAGTCAAAGAAATAAAAATGATCAAA
* *
3211201 ATTAAATCACGAGTCAAAAAATGAAAA
1 ATTAAATCACGAGTGAGAAAATGAAAA
3211228 CAATGGGAAT
Statistics
Matches: 271, Mismatches: 59, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
102 2 0.01
103 2 0.01
104 73 0.27
105 50 0.18
106 108 0.40
107 36 0.13
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (105 bp):
ATTAAATCACGAGTGAGAAAATGAAAATGACCAGGATTAAACCATGAGTCAAAAAACAAAAACGA
CCGAAATTAATCATGAGTCAAAGAAATAAAAATGATCAAA
Found at i:3211612 original size:47 final size:47
Alignment explanation
Indices: 3211537--3211629 Score: 132
Period size: 47 Copynumber: 2.0 Consensus size: 47
3211527 CGAGTCAGAA
*
3211537 AATGAAAACGATCAAGATTAAACCATGAGTCAAAAAATGAAAATGAT
1 AATGAAAACGATCAAAATTAAACCATGAGTCAAAAAATGAAAATGAT
** ** *
3211584 AATGAAAATTATCAAAATTAAATTATGAGTCAGAAAATGAAAATGA
1 AATGAAAACGATCAAAATTAAACCATGAGTCAAAAAATGAAAATGA
3211630 CTGAGATCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.56, C:0.08, G:0.14, T:0.23
Consensus pattern (47 bp):
AATGAAAACGATCAAAATTAAACCATGAGTCAAAAAATGAAAATGAT
Found at i:3213024 original size:69 final size:69
Alignment explanation
Indices: 3212951--3213346 Score: 325
Period size: 71 Copynumber: 5.7 Consensus size: 69
3212941 ATCACATCAG
* * * * *
3212951 AAAATAAAAATGATCGAAATTAAATCACGAGTCTAAAACTAAAAACAACCGGATTAAACCACGAG
1 AAAATAAAAATGATCGAGATTAAATCACGAGTCAAAAAATGAAAACAACCGGATTAAACCATGAG
3213016 TCAA
66 TCAA
* * * * * * * *
3213020 AAAATTAAAATGATAGGGATTAAACCACGAGTCAGAGAATGAAAACAACCGAGATGAAACCATTA
1 AAAATAAAAATGATCGAGATTAAATCACGAGTCAAAAAATGAAAACAACCG-GATTAAACCATGA
*
3213085 GTCAG
65 GTCAA
* * * *
3213090 AAAATGAAAAATGATCGGGATTAAACCATGAGTCAAAAAAT-AAAGACAACGGAGATTAAACCAT
1 AAAAT-AAAAATGATCGAGATTAAATCACGAGTCAAAAAATGAAA-ACAACCG-GATTAAACCAT
*
3213154 GACTCAA
63 GAGTCAA
* * * * * ** ** *
3213161 AGAAATAAAAATGACCAAAAGTAAATCATGAGTCAAAAAATGAAAATGATTGGAATTAAGCCATG
1 A-AAATAAAAATGATCGAGATTAAATCACGAGTCAAAAAATGAAAACAACCGG-ATTAAACCATG
3213226 AGTC-A
64 AGTCAA
* * * ** *
3213231 GAAATGAAAATGA-CAGAGATTAAATCACGAGTCAAAAAATGAAAACGACTAAGATTAAACCACG
1 AAAATAAAAATGATC-GAGATTAAATCACGAGTCAAAAAATGAAAACAAC-CGGATTAAACCATG
*
3213295 AGTCAG
64 AGTCAA
* *
3213301 AAAATAAAAACT-ACCTG-GATTAAATCAAGAGTCAAAAAATGAAAAC
1 AAAATAAAAA-TGATC-GAGATTAAATCACGAGTCAAAAAATGAAAAC
3213347 GACCAAACTG
Statistics
Matches: 263, Mismatches: 53, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
68 1 0.00
69 93 0.35
70 62 0.24
71 100 0.38
72 7 0.03
ACGTcount: A:0.53, C:0.14, G:0.16, T:0.17
Consensus pattern (69 bp):
AAAATAAAAATGATCGAGATTAAATCACGAGTCAAAAAATGAAAACAACCGGATTAAACCATGAG
TCAA
Found at i:3213115 original size:71 final size:67
Alignment explanation
Indices: 3212947--3213337 Score: 243
Period size: 69 Copynumber: 5.6 Consensus size: 67
3212937 TCAAATCACA
** *
3212947 TCAGAAAATAAAAATGATCGAAATTAAATCACGAGTCTAAAACTAAAAACAACCG-GATTAAACC
1 TCAGAAAATAAAAATGATCGGGATTAAACCACGAGTC-AAAA-T-AAAACAACCGAGATTAAACC
*
3213011 ACGAG
63 ATGAG
* * * *
3213016 TCAAAAAATTAAAATGATAGGGATTAAACCACGAGTCAGAGAATGAAAACAACCGAGATGAAACC
1 TCAGAAAATAAAAATGATCGGGATTAAACCACGAGTCA-A-AAT-AAAACAACCGAGATTAAACC
*
3213081 ATTAG
63 ATGAG
* *
3213086 TCAGAAAATGAAAAATGATCGGGATTAAACCATGAGTCAAAAAATAAAGACAACGGAGATTAAAC
1 TCAGAAAAT-AAAAATGATCGGGATTAAACCACGAGTC--AAAATAAA-ACAACCGAGATTAAAC
*
3213151 CATGAC
62 CATGAG
* * *** * * * ** ** *
3213157 TCAAAGAAATAAAAATGACCAAAAGTAAATCATGAGTCAAAAAATGAAAATGATTG-GAATTAAG
1 TCAGA-AAATAAAAATGATCGGGATTAAACCACGAGTC--AAAAT-AAAACAACCGAG-ATTAAA
3213221 CCATGAG
61 CCATGAG
* * * * **
3213228 TCAG-AAATGAAAATGA-CAGAGATTAAATCACGAGTCAAAAAATGAAAACGACTAAGATTAAAC
1 TCAGAAAATAAAAATGATC-GGGATTAAACCACGAGTC--AAAAT-AAAACAACCGAGATTAAAC
*
3213291 CACGAG
62 CATGAG
* * * *
3213297 TCAGAAAATAAAAACT-ACCTGGATTAAATCAAGAGTCAAAA
1 TCAGAAAATAAAAA-TGATCGGGATTAAACCACGAGTCAAAA
3213338 AATGAAAACG
Statistics
Matches: 261, Mismatches: 46, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
68 6 0.02
69 98 0.38
70 50 0.19
71 98 0.38
72 8 0.03
73 1 0.00
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.18
Consensus pattern (67 bp):
TCAGAAAATAAAAATGATCGGGATTAAACCACGAGTCAAAATAAAACAACCGAGATTAAACCATG
AG
Found at i:3214470 original size:55 final size:55
Alignment explanation
Indices: 3214377--3214489 Score: 163
Period size: 55 Copynumber: 2.1 Consensus size: 55
3214367 ACGAGTCAGA
* * *
3214377 AAATGAAAATGACCAGGATTAAACCATGAGTCAGAAAATAAAAATGACTTGAATT
1 AAATGAAAACGACCAGGATTAAACCATGAGTCAAAAAATAAAAATGACTAGAATT
* * * *
3214432 AAATGAAAACGACCGGGATTAAACCATGGGTCAAAAAATGAAAATGACTAGGATT
1 AAATGAAAACGACCAGGATTAAACCATGAGTCAAAAAATAAAAATGACTAGAATT
3214487 AAA
1 AAA
3214490 CCCTGGGTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19
Consensus pattern (55 bp):
AAATGAAAACGACCAGGATTAAACCATGAGTCAAAAAATAAAAATGACTAGAATT
Found at i:3214523 original size:90 final size:90
Alignment explanation
Indices: 3214357--3214525 Score: 232
Period size: 90 Copynumber: 1.9 Consensus size: 90
3214347 GAAAATGATT
* *
3214357 GGATTAAATCACGAGTCAGAAAATGAAAATGACCAGGATTAAACCATGAGTCAGAAAATAAAAAT
1 GGATTAAACCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCATGAGTCAGAAAATAAAAAT
*
3214422 GACTTGAATTAAATGAAAACGACCG
66 GACTCGAATTAAATGAAAACGACCG
* * * * * * *
3214447 GGATTAAACCATGGGTCAAAAAATGAAAATGACTAGGATTAAACCCTGGGTTAGAAAATGAAAAT
1 GGATTAAACCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCATGAGTCAGAAAATAAAAAT
3214512 GAC-CGATATTAAAT
66 GACTCGA-ATTAAAT
3214526 TACGAGTCAA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
89 2 0.03
90 66 0.97
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.21
Consensus pattern (90 bp):
GGATTAAACCACGAGTCAAAAAATGAAAATGACCAGGATTAAACCATGAGTCAGAAAATAAAAAT
GACTCGAATTAAATGAAAACGACCG
Found at i:3214533 original size:125 final size:124
Alignment explanation
Indices: 3214308--3214548 Score: 299
Period size: 125 Copynumber: 1.9 Consensus size: 124
3214298 ACAAGTCAGA
* * * *
3214308 AAATGAAAATGATGGGAATTAAACCATGAGTCAGAAAATGAAAATGATTGGATTAAATCACGAGT
1 AAATGAAAACGACGGGAATTAAACCATGAGTCAAAAAATGAAAATGATAGGATTAAATCACGAGT
* *
3214373 CAGAAAATGAAAATGACCAGGATTAAACCATGAGTCAGAAAATAAAAATGACTTGAATT
66 CAGAAAATGAAAATGACCAGGATTAAACCACGAGTCAAAAAATAAAAATGACTTGAATT
* *
3214432 AAATGAAAACGACCGGG-ATTAAACCATGGGTCAAAAAATGAAAATGACTAGGATTAAA-CCCTG
1 AAATGAAAACGA-CGGGAATTAAACCATGAGTCAAAAAATGAAAATGA-TAGGATTAAATCAC-G
* * * ** *
3214495 GGTTAGAAAATGAAAATGACC-GATATTAAATTACGAGTCAAAAAATGAAAATGA
63 AGTCAGAAAATGAAAATGACCAG-GATTAAACCACGAGTCAAAAAATAAAAATGA
3214549 TCGGTATTAA
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
124 42 0.42
125 57 0.58
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.21
Consensus pattern (124 bp):
AAATGAAAACGACGGGAATTAAACCATGAGTCAAAAAATGAAAATGATAGGATTAAATCACGAGT
CAGAAAATGAAAATGACCAGGATTAAACCACGAGTCAAAAAATAAAAATGACTTGAATT
Found at i:3214840 original size:71 final size:70
Alignment explanation
Indices: 3214728--3215002 Score: 222
Period size: 71 Copynumber: 3.9 Consensus size: 70
3214718 AAAACCCCTA
* * * *
3214728 GGATTAAACCATGAGTCAGAAAATGAAAGCAATCGGGATTAAACGATGAGTCAAAAAATGAAAAA
1 GGATT-AACCATGAGTCAAAAAATGAAAACGATCGAGATTAAACGATGAGTCAAAAAATGAAAAA
**
3214793 TGATTG
65 TGACAG
* * * *
3214799 GGATTATACCATGAGTAAAAAAATGAAAACGATCGACATTAAATC-ATAAGTAAAAAAAT-AAAA
1 GGATTA-ACCATGAGTCAAAAAATGAAAACGATCGAGATTAAA-CGATGAGTCAAAAAATGAAAA
3214862 ATGACAG
64 ATGACAG
* * * *
3214869 GGACTAAACACTGCGTCAAAAAATGAAAACGA-C-AGGATTAAA-GCATGAGTCAAAAAATGTAA
1 GGATTAACCA-TGAGTCAAAAAATGAAAACGATCGA-GATTAAACG-ATGAGTCAAAAAATGAAA
**
3214931 AACAACAG
63 AATGACAG
** * * **
3214939 GGATTAAACCACAAGTCAAAAAGTGAAAATGA-CTGAGATTAAATC-ACAAGTCAAAAAATGAAA
1 GGATT-AACCATGAGTCAAAAAATGAAAACGATC-GAGATTAAA-CGATGAGTCAAAAAATGAAA
3215002 A
63 A
3215003 CGACCAAAAT
Statistics
Matches: 162, Mismatches: 30, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
68 1 0.01
69 22 0.14
70 63 0.39
71 74 0.46
72 2 0.01
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.18
Consensus pattern (70 bp):
GGATTAACCATGAGTCAAAAAATGAAAACGATCGAGATTAAACGATGAGTCAAAAAATGAAAAAT
GACAG
Found at i:3215279 original size:139 final size:140
Alignment explanation
Indices: 3215022--3215283 Score: 316
Period size: 139 Copynumber: 1.9 Consensus size: 140
3215012 TTAAACGACA
* ** *
3215022 AGTCAAAAAATGAAAATGACCGGCATTAAATAACGAGTCAAAGAAATAAAAATGACTGAAATCAA
1 AGTCAAAAAATAAAAATGACCGAAATTAAATAACGAGTCAAAGAAATAAAAATGACCGAAATCAA
* * *
3215087 ATTATGAATCAGAAAATTAAAATGACCAGGATTAAACCACTAGTCAAGAAATGAAAATAATCTAA
66 ATCACGAATCAGAAAACTAAAATGACCAGGATTAAACCACTAGTCAAGAAATGAAAATAATCTAA
3215152 ATTAATCATG
131 ATTAATCATG
* * * * * ** *
3215162 AGTCAAAAAATAAAAATGATCGAAATTAAATAATGAGTCTAA-AACTGAAAATGACCGGGATTAA
1 AGTCAAAAAATAAAAATGACCGAAATTAAATAACGAGTCAAAGAAATAAAAATGACCGAAATCAA
* *
3215226 ATCACGAATCAGAAAACTAAACTGA-TAGGGATTAAACCA-TGAGTC-AGAGAATGAAAAT
66 ATCACGAATCAGAAAACTAAAATGACCA-GGATTAAACCACT-AGTCAAGA-AATGAAAAT
3215284 GATCGAGATG
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
138 5 0.05
139 61 0.60
140 36 0.35
ACGTcount: A:0.52, C:0.12, G:0.15, T:0.21
Consensus pattern (140 bp):
AGTCAAAAAATAAAAATGACCGAAATTAAATAACGAGTCAAAGAAATAAAAATGACCGAAATCAA
ATCACGAATCAGAAAACTAAAATGACCAGGATTAAACCACTAGTCAAGAAATGAAAATAATCTAA
ATTAATCATG
Found at i:3217277 original size:139 final size:140
Alignment explanation
Indices: 3217134--3217431 Score: 363
Period size: 139 Copynumber: 2.1 Consensus size: 140
3217124 GAGCTATCTA
* * *
3217134 GATTAAATGATGAGTCAAAAATGAAAAACAACTGA-GAATATACCACAAGTCAAAAAATGAAAAC
1 GATTAAATGATGAGTCAAAAATGAAAAACAA-AGAGGAATAAACAACAAGTCAAAAAATGAAAAC
* * * *
3217198 AACCGAGATTAAATCATGAGTCA-AAAATAAAAATGA-CAAGGATTAAACAATGTGTCAAAAAAT
65 AACCGAGATTAAACCATGAGTAAGAAAATAAAAATGACCAA-AATTAAACAATGAGTCAAAAAAT
3217261 GAAAAAGA-TAGG
129 GAAAAAGACT-GG
* * * * *
3217273 GATTAAA-GCACGAGTCAAAAATGTAAAACAAAGAGGATTAAACAACAAGTCAAAAAGTGAAAAT
1 GATTAAATG-ATGAGTCAAAAATGAAAAACAAAGAGGAATAAACAACAAGTCAAAAAATGAAAAC
* *
3217337 GACCGAGATTAAACCATGAGTAAGAAAATGAAAATGACCAAAATTAAACAATGAGTCAAAAAATG
65 AACCGAGATTAAACCATGAGTAAGAAAATAAAAATGACCAAAATTAAACAATGAGTCAAAAAATG
*
3217402 AAAATGACTGG
130 AAAAAGACTGG
* * *
3217413 CATTAAATCATGATTCAAA
1 GATTAAATGATGAGTCAAA
3217432 GAAATAAAAA
Statistics
Matches: 134, Mismatches: 19, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
138 3 0.02
139 71 0.53
140 56 0.42
141 4 0.03
ACGTcount: A:0.54, C:0.11, G:0.16, T:0.18
Consensus pattern (140 bp):
GATTAAATGATGAGTCAAAAATGAAAAACAAAGAGGAATAAACAACAAGTCAAAAAATGAAAACA
ACCGAGATTAAACCATGAGTAAGAAAATAAAAATGACCAAAATTAAACAATGAGTCAAAAAATGA
AAAAGACTGG
Found at i:3217854 original size:37 final size:35
Alignment explanation
Indices: 3217788--3217879 Score: 96
Period size: 37 Copynumber: 2.6 Consensus size: 35
3217778 GAATTATGTT
*
3217788 CACGAG-CAAAAAATGAAAACAATGGGGATTAAGC
1 CACGAGTCAAAAAATGAAAACAATGGGGATTAAAC
* * * *
3217822 CACGAGTCAGAAAATGAAAATTAATCTGGGATTAAAT
1 CACGAGTCAAAAAATGAAAA-CAAT-GGGGATTAAAC
* *
3217859 CACAAGTCATAAAATGAAAAC
1 CACGAGTCAAAAAATGAAAAC
3217880 CACCAAGGAT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
34 6 0.13
35 12 0.26
36 3 0.06
37 26 0.55
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.17
Consensus pattern (35 bp):
CACGAGTCAAAAAATGAAAACAATGGGGATTAAAC
Found at i:3218053 original size:71 final size:71
Alignment explanation
Indices: 3217973--3218155 Score: 183
Period size: 71 Copynumber: 2.6 Consensus size: 71
3217963 TAAATTACGG
* * ** *
3217973 GTCAGAAAATGAAAACGATCGAGATTAAACCATGAGTTA-A-AAATTGAAAACAATTGAGATTAA
1 GTCAGAAAATGAAAACGATCGAGATTAAACCATGAGTCAGAGAAA-TAAAAACAATCAAAATTAA
3218036 ATCACAA
65 ATCACAA
* * * ** * **
3218043 GTCTGAAAAATGAAAATGATCG-GTATTAAATCACAAGCCAGAGAAATAAAAATGATCAAAATTA
1 GTCAG-AAAATGAAAACGATCGAG-ATTAAACCATGAGTCAGAGAAATAAAAACAATCAAAATTA
*
3218107 AATCACGA
64 AATCACAA
*
3218115 GTCAGAAAATGAAAACGATCAAGATTAAACCATGAGTCAGA
1 GTCAGAAAATGAAAACGATCGAGATTAAACCATGAGTCAGA
3218156 AAACGAAAAT
Statistics
Matches: 87, Mismatches: 21, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
70 5 0.06
71 54 0.62
72 25 0.29
73 3 0.03
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (71 bp):
GTCAGAAAATGAAAACGATCGAGATTAAACCATGAGTCAGAGAAATAAAAACAATCAAAATTAAA
TCACAA
Found at i:3218224 original size:152 final size:154
Alignment explanation
Indices: 3218025--3218320 Score: 341
Period size: 152 Copynumber: 1.9 Consensus size: 154
3218015 ATTGAAAACA
* * * * *
3218025 ATTGAGATTAAATCACAAGTCTGAAAAATGAAAATGATCGGTATTAAATCACAAGCCAGAGAAAT
1 ATTGAGATCAAAACACAAGTCTGAAAAAAGAAAACGATCGGTATTAAAGCACAAGCCAGA-AAAT
* * * * *
3218090 AAAAATGA-TCAAAATTAAATCAC-GAGTCAGAAAATGAAAACGATCAAGATTAAACCATGAGTC
65 AAAAATGATTCAAAATT-AATCACTAAGTCAGAAAATGAAAACCACCAAAATTAAACCACGAGTC
*
3218153 AGAAAACGAAAATGATAATGAAAATG
129 AAAAAACGAAAATGATAATGAAAATG
* *
3218179 ATTGAGATCAAAACACAAGT-T-AAAAAAGAAAACGATC-GTAATTAAAGCACGAGTCAGAAAAT
1 ATTGAGATCAAAACACAAGTCTGAAAAAAGAAAACGATCGGT-ATTAAAGCACAAGCCAGAAAAT
* *** * * *
3218241 GAAAATGATTGGGACTTAATCCCTAAGTCAGAAAATTAAAACCACCAAAATTAAACCACGAGTCA
65 AAAAATGATTCAAAATTAATCACTAAGTCAGAAAATGAAAACCACCAAAATTAAACCACGAGTCA
*
3218306 AAAAATGAAAATGAT
130 AAAAACGAAAATGAT
3218321 CGGGATTAAA
Statistics
Matches: 118, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
151 18 0.15
152 81 0.69
153 1 0.01
154 18 0.15
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.20
Consensus pattern (154 bp):
ATTGAGATCAAAACACAAGTCTGAAAAAAGAAAACGATCGGTATTAAAGCACAAGCCAGAAAATA
AAAATGATTCAAAATTAATCACTAAGTCAGAAAATGAAAACCACCAAAATTAAACCACGAGTCAA
AAAACGAAAATGATAATGAAAATG
Found at i:3219446 original size:18 final size:17
Alignment explanation
Indices: 3219403--3219446 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 17
3219393 ATTATACCAC
3219403 GAGTCAAAAACTAAAAAT
1 GAGTC-AAAACTAAAAAT
*
3219421 GA-TCAAAATTAAACAAT
1 GAGTCAAAACTAAA-AAT
3219438 GAGTCAAAA
1 GAGTCAAAA
3219447 AATGAAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 8 0.35
17 7 0.30
18 8 0.35
ACGTcount: A:0.59, C:0.11, G:0.11, T:0.18
Consensus pattern (17 bp):
GAGTCAAAACTAAAAAT
Found at i:3219456 original size:18 final size:18
Alignment explanation
Indices: 3219403--3219457 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
3219393 ATTATACCAC
*
3219403 GAGTCAAAAACTAAAAAT
1 GAGTCAAAAAATAAAAAT
*
3219421 GA-TC-AAAATTAAACAAT
1 GAGTCAAAAAATAAA-AAT
*
3219438 GAGTCAAAAAATGAAAAT
1 GAGTCAAAAAATAAAAAT
3219456 GA
1 GA
3219458 CTAGCATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 8 0.26
17 7 0.23
18 9 0.29
19 7 0.23
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.18
Consensus pattern (18 bp):
GAGTCAAAAAATAAAAAT
Found at i:3219910 original size:34 final size:35
Alignment explanation
Indices: 3219798--3219910 Score: 124
Period size: 34 Copynumber: 3.3 Consensus size: 35
3219788 CATGAGTCAG
* * *
3219798 AAATGAAAA-TGACAAGGATTAAATCACGAATTAAA
1 AAATGAAAACT-ACTAGGATTAAATCACGAGTCAAA
* * * *
3219833 AAATGAAAA-TACTAAGATTAAACCACAAGTCAGA
1 AAATGAAAACTACTAGGATTAAATCACGAGTCAAA
*
3219867 AAATAAAAACTACT-GGATTAAATCACGAGTCAAA
1 AAATGAAAACTACTAGGATTAAATCACGAGTCAAA
3219901 AAATGAAAAC
1 AAATGAAAAC
3219911 GACCAAACTA
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
34 50 0.78
35 14 0.22
ACGTcount: A:0.57, C:0.12, G:0.12, T:0.19
Consensus pattern (35 bp):
AAATGAAAACTACTAGGATTAAATCACGAGTCAAA
Found at i:3220819 original size:106 final size:103
Alignment explanation
Indices: 3220707--3221054 Score: 276
Period size: 104 Copynumber: 3.3 Consensus size: 103
3220697 AAAACGATAG
*
3220707 GGATTAAACCATGAGTCAGAGAATGAAAATGAT-AGAAATGAAACCACCAGTCAAAAAATGAAAA
1 GGATTAAACCATGAGTCAGAGAATGAAAATGATGAG-AATGAAACCACAAGTCAAAAAATG-AAA
* * *
3220771 ATGATCTGG-ATTAAACCGTGTGACAGAAAATGAAGGTAATGA-
64 ATGAT-GGGAATTAAACCATGAGACAGAAAATGAA---AATGAC
* ** * *
3220813 GGATTAAACCA-CATGTCAGAGAAACAAAAATGATGAGAATTAAACCACAAGTCAGAAAATGAAA
1 GGATTAAACCATGA-GTCAGAG-AATGAAAATGATGAGAATGAAACCACAAGTCAAAAAATGAAA
*
3220877 ATGATGGGAATTAAACCATGAGTCAGAAAATGAAAATGAC
64 ATGATGGGAATTAAACCATGAGACAGAAAATGAAAATGAC
* * * ** * * ** * *
3220917 TGGATTAAATCATGAGTCAAAAAATGAAAATGACCAGGATTAAACCATGAGTCAGAAAATAAAAA
1 -GGATTAAACCATGAGTCAGAGAATGAAAATGATGAGAATGAAACCACAAGTCAAAAAATGAAAA
* * ** * *
3220982 TGACT-TGAATTAAATCACAAGTCAAAAAATGAAAATGATC
65 TGA-TGGGAATTAAACCATGAGACAGAAAATGAAAATGA-C
* *
3221022 GGGATTAAACCAT-AGGTCAAAAAATGAAAATGA
1 -GGATTAAACCATGA-GTCAGAGAATGAAAATGA
3221055 CTAGGATTAA
Statistics
Matches: 203, Mismatches: 29, Indels: 21
0.80 0.11 0.08
Matches are distributed among these distances:
103 5 0.02
104 67 0.33
105 49 0.24
106 49 0.24
107 31 0.15
108 2 0.01
ACGTcount: A:0.50, C:0.11, G:0.19, T:0.19
Consensus pattern (103 bp):
GGATTAAACCATGAGTCAGAGAATGAAAATGATGAGAATGAAACCACAAGTCAAAAAATGAAAAT
GATGGGAATTAAACCATGAGACAGAAAATGAAAATGAC
Found at i:3221222 original size:35 final size:34
Alignment explanation
Indices: 3220896--3221233 Score: 132
Period size: 35 Copynumber: 9.7 Consensus size: 34
3220886 ATTAAACCAT
* * * *
3220896 GAGTCAGAAAATGAAAATGA-CTGGATTAAATCAT
1 GAGTCAAAAAATGAAAATGACCAGGATAAAAT-AC
** *
3220930 GAGTCAAAAAATGAAAATGACCAGGATTAAACCAT
1 GAGTCAAAAAATGAAAATGACCAGGA-TAAAATAC
* * ** * *
3220965 GAGTCAGAAAATAAAAATGACTTGAATTAAATCAC
1 GAGTCAAAAAATGAAAATGACCAGGATAAAAT-AC
* * *
3221000 AAGTCAAAAAATGAAAATGATCGGGATTAAACCATA-
1 GAGTCAAAAAATGAAAATGACCAGGA-TAAA--ATAC
* ** *
3221036 G-GTCAAAAAATGAAAATGACTAGGATTAAACCAT
1 GAGTCAAAAAATGAAAATGACCAGGA-TAAAATAC
* * * *
3221070 GGGTTAGAAAATGAAAATGACC--GATATTAAATTGC
1 GAGTCAAAAAATGAAAATGACCAGGATA--AAA-TAC
* *
3221105 GAGTCAAAAAATGAAAATGATC-GGTATTAAATAAC
1 GAGTCAAAAAATGAAAATGACCAGG-ATAAAAT-AC
* * * * * ** *
3221140 AAG-CTAGAGAAATAAAAAAGATCAAAATTAAATAAC
1 GAGTC-A-AAAAATGAAAATGACCAGGATAAAAT-AC
***
3221176 GAGTTGGAAAATGAAAATGACCAGGATCAAAATAC
1 GAGTCAAAAAATGAAAATGACCAGGAT-AAAATAC
* *
3221211 GAGTTAAAAAATGAAAACGACCA
1 GAGTCAAAAAATGAAAATGACCA
3221234 AAATTAAAGC
Statistics
Matches: 224, Mismatches: 61, Indels: 37
0.70 0.19 0.11
Matches are distributed among these distances:
32 2 0.01
33 3 0.01
34 27 0.12
35 151 0.67
36 36 0.16
37 3 0.01
38 2 0.01
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (34 bp):
GAGTCAAAAAATGAAAATGACCAGGATAAAATAC
Found at i:3222498 original size:42 final size:42
Alignment explanation
Indices: 3222452--3222563 Score: 190
Period size: 42 Copynumber: 2.7 Consensus size: 42
3222442 CATCATAAAC
3222452 AAGACATTTTACACTTGCATCACTTGCATCTGCATCACAAGA
1 AAGACATTTTACACTTGCATCACTTGCATCTGCATCACAAGA
3222494 AAGACATTTTACACTTGCATCACTTGCATCTGCATCACAAGA
1 AAGACATTTTACACTTGCATCACTTGCATCTGCATCACAAGA
* * *
3222536 AAGACA-TTCATATTTGCATCACTTGCAT
1 AAGACATTTTACACTTGCATCACTTGCAT
3222564 TTACACTTGT
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
41 19 0.28
42 48 0.72
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (42 bp):
AAGACATTTTACACTTGCATCACTTGCATCTGCATCACAAGA
Found at i:3222730 original size:18 final size:18
Alignment explanation
Indices: 3222707--3222752 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
3222697 TGCATCAAGG
3222707 ATTCACATCAACATTTGC
1 ATTCACATCAACATTTGC
*
3222725 ATTCACATTAACATTTGC
1 ATTCACATCAACATTTGC
3222743 ATTCACATCA
1 ATTCACATCA
3222753 TTTGATGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.35
Consensus pattern (18 bp):
ATTCACATCAACATTTGC
Found at i:3223248 original size:37 final size:36
Alignment explanation
Indices: 3223198--3223314 Score: 146
Period size: 37 Copynumber: 3.2 Consensus size: 36
3223188 TATTCCAAAA
* *
3223198 TTTCAAAGTTTCAAAGCCTTTGTTTAAGGGGAGCCAT
1 TTTCAAAGTTTCAAAGCCTCTATTT-AGGGGAGCCAT
* *
3223235 TTTCAAAGTTTCAAAGCCTCTATTTGGGGGGAGTCAT
1 TTTCAAAGTTTCAAAGCCTCTATTT-AGGGGAGCCAT
* *
3223272 TTTAAAAGTCTT-AAAGCCTCTATTTAGGGGAGCGAT
1 TTTCAAAGT-TTCAAAGCCTCTATTTAGGGGAGCCAT
3223308 TTTCAAA
1 TTTCAAA
3223315 CAGGATTCAA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
36 14 0.20
37 53 0.77
38 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.35
Consensus pattern (36 bp):
TTTCAAAGTTTCAAAGCCTCTATTTAGGGGAGCCAT
Found at i:3224223 original size:144 final size:143
Alignment explanation
Indices: 3223867--3224273 Score: 424
Period size: 144 Copynumber: 2.8 Consensus size: 143
3223857 GCACTGGGGG
* * * * * * ** *
3223867 AAGTATAAAATTACTAAAATGCCCTTA-AAGGGAAATTTTTGTAATTTGGTCTTCCCAAAATTAA
1 AAGTATGAAATTACTAAAATGCCCTTATAAAGG-TATTTTTGTAATTTGGTTTTTCCGAGCTTAG
*** *
3223931 ATTTTCATGAAACATTTTTTATCTTAATTTCATAATATTTCATGATTTTTTGTGCATTTGAAACC
65 ATTTTCATGAAAC-TTTCAAATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAACC
* *
3223996 ACAACCGTACCCCGAA
129 ACAA-CGTAACCCAAA
** * * *** ** *
3224012 AAGTATGAAATTACCCAAATACCCTTATAAAGGTATTCTCACAATTTGACCTTTT-CGAGCTTGG
1 AAGTATGAAATTACTAAAATGCCCTTATAAAGGTATTTTTGTAATTTG-GTTTTTCCGAGCTTAG
* * *
3224076 ATTTTTATGAAACTTTCCAGATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAATT
65 ATTTTCATGAAACTTT-CAAATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAA-C
* **
3224141 GAGTA-GTAACCCAAA
128 CACAACGTAACCCAAA
* *
3224156 AAGTGTGAAATTACTAAAATGCCCTTATAAAGGTATTTTTGTAATTTGGTTTTTCCGAGCTCAGA
1 AAGTATGAAATTACTAAAATGCCCTTATAAAGGTATTTTTGTAATTTGGTTTTTCCGAGCTTAGA
*
3224221 TTTTCATGAAACTTTTCAAATCTCAATTTCATAATATTTCATGATTTTTGGTG
66 TTTTCATGAAAC-TTTCAAATCTTAATTTCATAATATTTCATGATTTTTGGTG
3224274 TTTTAAGATC
Statistics
Matches: 211, Mismatches: 45, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
143 4 0.02
144 105 0.50
145 94 0.45
146 8 0.04
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.40
Consensus pattern (143 bp):
AAGTATGAAATTACTAAAATGCCCTTATAAAGGTATTTTTGTAATTTGGTTTTTCCGAGCTTAGA
TTTTCATGAAACTTTCAAATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAACCAC
AACGTAACCCAAA
Found at i:3228256 original size:34 final size:35
Alignment explanation
Indices: 3228125--3228271 Score: 119
Period size: 35 Copynumber: 4.3 Consensus size: 35
3228115 TAGTGCCATG
* *
3228125 TAAACTGGGC-TTAAAATTTTCATTAGG-GCTAGA
1 TAAACTGGGCTTTAAAATCTTCATCAGGTGCTAGA
* * * * * *
3228158 TAAATTAGGC-TT-AAATTTTCA-CTAGGAGCCAGC
1 TAAACTGGGCTTTAAAATCTTCATC-AGGTGCTAGA
*
3228191 TAAACTGGGCTTTAAAATCTTCATCAGGTGCTAGG
1 TAAACTGGGCTTTAAAATCTTCATCAGGTGCTAGA
* *
3228226 TAAACTGGG-TTTAAAATCTTTCTTTA-GTGCTAGA
1 TAAACTGGGCTTTAAAATC-TTCATCAGGTGCTAGA
*
3228260 TAAACTAGGCTT
1 TAAACTGGGCTT
3228272 GAAATTGTTT
Statistics
Matches: 92, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
32 12 0.13
33 22 0.24
34 26 0.28
35 31 0.34
36 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (35 bp):
TAAACTGGGCTTTAAAATCTTCATCAGGTGCTAGA
Found at i:3228445 original size:133 final size:136
Alignment explanation
Indices: 3228297--3228581 Score: 298
Period size: 133 Copynumber: 2.1 Consensus size: 136
3228287 GCCATCTAAG
** * * *
3228297 CTGGGCTT-AAA-CTTTCACTAGTGTTAGGTAAA-TTTGGCTTAAAAGTTTCAT-TAGAGGCCAA
1 CTGGGCTTAAAATCTTTCACTAGTGCCAAGTAAACTGT-GCTTAAAAGTTTCATCAAGA-GCCAA
* * * * *
3228358 ATAAATTGAGCTTAAATTTTTACTACTA-CCAGCTAAGCTAGGC-TTAAACT-TTCA-CCGGTGC
64 ATAAACTGAGCTTAAATTTTCACTACGAGCCAGCTAAGCTAGGCTTTAAAATCTTCATCAGGTGC
*
3228419 TCGGTAAA
129 TAGGTAAA
** * * * *
3228427 CTGGGCTTAGAAATCTTTCTTTAGTGCCAAGTAAACTGTGTTTAAAATTTTCATCAAGAGCTAGA
1 CTGGGCTTA-AAATCTTTCACTAGTGCCAAGTAAACTGTGCTTAAAAGTTTCATCAAGAGCCAAA
* * *
3228492 TAAACTGAGCTTAAATTTTCACTAGGAGCCAGCTAAGCTGGGCTTTAAAATCTTCATTAGGTGCT
65 TAAACTGAGCTTAAATTTTCACTACGAGCCAGCTAAGCTAGGCTTTAAAATCTTCATCAGGTGCT
3228557 AGGTAAA
130 AGGTAAA
3228564 CTGGGCTTAAAAATCTTT
1 CTGGGCTT-AAAATCTTT
3228582 TTTTGGTGCC
Statistics
Matches: 125, Mismatches: 20, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
130 8 0.06
132 3 0.02
133 56 0.45
134 19 0.15
135 6 0.05
136 4 0.03
137 28 0.22
138 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (136 bp):
CTGGGCTTAAAATCTTTCACTAGTGCCAAGTAAACTGTGCTTAAAAGTTTCATCAAGAGCCAAAT
AAACTGAGCTTAAATTTTCACTACGAGCCAGCTAAGCTAGGCTTTAAAATCTTCATCAGGTGCTA
GGTAAA
Found at i:3228612 original size:137 final size:132
Alignment explanation
Indices: 3228358--3228618 Score: 326
Period size: 137 Copynumber: 1.9 Consensus size: 132
3228348 TAGAGGCCAA
* * * * * *
3228358 ATAAATTGAGCTTAAATTTTTACTACTACCAGCTAAGCTAGGCTTAAACTTTCACCGGTGCTCGG
1 ATAAACTGAGCTTAAATTTTCACTACGACCAGCTAAGCTAGGCTTAAAATTTCACAGGTGCTAGG
* * *
3228423 TAAACTGGGCTTAGAAATCTTTCTTTAGTGCCAAGTAAACTGTGTTTAAAATTTTCATCAAGAGC
66 TAAACTGGGCTTAAAAATCTTTCTTTAGTGCCAAATAAACTGTGCTTAAAA-TTTCATCAAGAGC
3228488 TAG
130 TAG
* * *
3228491 ATAAACTGAGCTTAAATTTTCACTAGGAGCCAGCTAAGCTGGGCTTTAAAATCTTCATTAGGTGC
1 ATAAACTGAGCTTAAATTTTCACTACGA-CCAGCTAAGCTAGGC-TTAAAAT-TTCA-CAGGTGC
* * *
3228556 TAGGTAAACTGGGCTTAAAAATCTTTTTTTGGTGCCAAATAAACTAG-GCTTGAAATTTCATCA
62 TAGGTAAACTGGGCTTAAAAATCTTTCTTTAGTGCCAAATAAACT-GTGCTTAAAATTTCATCA
3228619 GGTAATAAGT
Statistics
Matches: 108, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
133 24 0.22
134 14 0.13
135 6 0.06
136 12 0.11
137 51 0.47
138 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (132 bp):
ATAAACTGAGCTTAAATTTTCACTACGACCAGCTAAGCTAGGCTTAAAATTTCACAGGTGCTAGG
TAAACTGGGCTTAAAAATCTTTCTTTAGTGCCAAATAAACTGTGCTTAAAATTTCATCAAGAGCT
AG
Found at i:3228799 original size:168 final size:167
Alignment explanation
Indices: 3228492--3228814 Score: 434
Period size: 168 Copynumber: 1.9 Consensus size: 167
3228482 AAGAGCTAGA
* * *
3228492 TAAACTGAGCTTAAATTTTCACTAGGAGCCAGCTAAGCTGGGCTTTAAAATCTTCATTAGGTGCT
1 TAAACTGAGCTTAAATTTTCACTAGGAGCCAGCTAAGCTAGGCTTTAAAATCTTCATCAGATGCT
* * * *
3228557 AGGTAAACTGGGCTTAAAAATCTTTTTTTGGTGCCAAATAAACTAGGCTTGAAATTTCATCAGGT
66 AGGTAAACTGGGCTTAAAAATCTTTCTTTGGTGCCAAATAAACTAAGCTTAAAATTTCATCAAGT
* *
3228622 AATAAGTAAATTGGGCTTAAACTTTTACTAGTGCCAGG
131 AACAAGTAAACTGGG-TTAAACTTTTACTAGTGCCAGG
* * * *
3228660 TAAACT-AGTCTTAAATTTTCACTGGGAGCCAGCTAAGCTATGCTTTAAAATCTTTATCAGATGT
1 TAAACTGAG-CTTAAATTTTCACTAGGAGCCAGCTAAGCTAGGCTTTAAAATCTTCATCAGATGC
* **
3228724 TAGGTAAACTGGGCTT-AAAATCTTTCTTTGGTGCCAGATAAACTAAGCTTAAAATTTTTTTCAA
65 TAGGTAAACTGGGCTTAAAAATCTTTCTTTGGTGCCAAATAAACTAAGCTTAAAA-TTTCATCAA
** *
3228788 GTGGCAAGTAAACTGGGTTTAACTTTT
129 GTAACAAGTAAACTGGGTTAAACTTTT
3228815 TGGGTAGACT
Statistics
Matches: 134, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
167 45 0.34
168 89 0.66
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (167 bp):
TAAACTGAGCTTAAATTTTCACTAGGAGCCAGCTAAGCTAGGCTTTAAAATCTTCATCAGATGCT
AGGTAAACTGGGCTTAAAAATCTTTCTTTGGTGCCAAATAAACTAAGCTTAAAATTTCATCAAGT
AACAAGTAAACTGGGTTAAACTTTTACTAGTGCCAGG
Found at i:3229058 original size:22 final size:21
Alignment explanation
Indices: 3228978--3229059 Score: 92
Period size: 22 Copynumber: 3.8 Consensus size: 21
3228968 ATACTTGTTT
*
3228978 AACTAATCTAGGCTTATATGC
1 AACTAATCTAGGCTTATGTGC
*
3228999 AAATGAATCTAGGCTTATGTGTC
1 AACT-AATCTAGGCTTATGTG-C
* *
3229022 AACTAAACTAAGCTTATGTGCC
1 AACTAATCTAGGCTTATGTG-C
*
3229044 AACTAATCTGGGCTTA
1 AACTAATCTAGGCTTA
3229060 AGACTTCACG
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
21 3 0.06
22 43 0.86
23 4 0.08
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (21 bp):
AACTAATCTAGGCTTATGTGC
Found at i:3229716 original size:35 final size:35
Alignment explanation
Indices: 3229657--3229893 Score: 189
Period size: 35 Copynumber: 6.7 Consensus size: 35
3229647 GACAATGGGG
*
3229657 ATTAAACCATGAGTTAGAGAAATAAAAATGACTAGA
1 ATTAAACCATGAGTCAGA-AAATAAAAATGACTAGA
* *
3229693 ATTAAATCACGAGTCAGAAAATAAAAATGA-TAAGA
1 ATTAAACCATGAGTCAGAAAATAAAAATGACT-AGA
* * *
3229728 ATTAAACCATGAGTCAGCAAATGAAAATGATCAAG-
1 ATTAAACCATGAGTCAGAAAATAAAAATGA-CTAGA
* * *
3229763 ATTAAATC-TCGAGTCAGAAAATAAAAA-CATCTAGG
1 ATTAAACCAT-GAGTCAGAAAATAAAAATGA-CTAGA
* * *
3229798 ATTAAACTATGACTCAAAAAATAAAAATGACTCA-A
1 ATTAAACCATGAGTCAGAAAATAAAAATGACT-AGA
* ** * * *
3229833 ATTAAATCACCAGTCAAAAAATGAAAATGA-TCGA
1 ATTAAACCATGAGTCAGAAAATAAAAATGACTAGA
* *
3229867 GATTAAACCATGAGTCAAAAAAGAAAA
1 -ATTAAACCATGAGTCAGAAAATAAAA
3229894 CGATAATGAA
Statistics
Matches: 160, Mismatches: 31, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
34 9 0.06
35 131 0.82
36 20 0.12
ACGTcount: A:0.54, C:0.12, G:0.14, T:0.21
Consensus pattern (35 bp):
ATTAAACCATGAGTCAGAAAATAAAAATGACTAGA
Found at i:3229779 original size:70 final size:69
Alignment explanation
Indices: 3229657--3229893 Score: 246
Period size: 70 Copynumber: 3.4 Consensus size: 69
3229647 GACAATGGGG
* *
3229657 ATTAAACCATGAGTTAGAGAAATAAAAATGA-CTAGAATTAAATCACGAGTCAGAAAATAAAAAT
1 ATTAAACCATGAGTCAGA-AAATAAAAATGATCAAG-ATTAAATCACGAGTCAGAAAATAAAAAT
3229721 GATAAGA
64 GAT-AGA
* * *
3229728 ATTAAACCATGAGTCAGCAAATGAAAATGATCAAGATTAAATCTCGAGTCAGAAAATAAAAACAT
1 ATTAAACCATGAGTCAGAAAATAAAAATGATCAAGATTAAATCACGAGTCAGAAAAT-AAAA-AT
* *
3229793 -CTAGG
64 GATAGA
* * * * * *
3229798 ATTAAACTATGACTCAAAAAATAAAAATGACTCAA-ATTAAATCACCAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAGAAAATAAAAATGA-TCAAGATTAAATCACGAGTCAGAAAATAAAAATG
*
3229862 ATCGA
65 ATAGA
* *
3229867 GATTAAACCATGAGTCAAAAAAGAAAA
1 -ATTAAACCATGAGTCAGAAAATAAAA
3229894 CGATAATGAA
Statistics
Matches: 138, Mismatches: 22, Indels: 13
0.80 0.13 0.08
Matches are distributed among these distances:
68 2 0.01
69 5 0.04
70 101 0.73
71 28 0.20
72 2 0.01
ACGTcount: A:0.54, C:0.12, G:0.14, T:0.21
Consensus pattern (69 bp):
ATTAAACCATGAGTCAGAAAATAAAAATGATCAAGATTAAATCACGAGTCAGAAAATAAAAATGA
TAGA
Found at i:3229882 original size:105 final size:105
Alignment explanation
Indices: 3229656--3229893 Score: 259
Period size: 105 Copynumber: 2.3 Consensus size: 105
3229646 AGACAATGGG
* * * *
3229656 GATTAAACCATGAGTTAGAGAAATAAAAATGACTAGAATTAAATCACGAGTCAGAAAATAAAAAT
1 GATTAAACCATGAGTCAGA-AAATAAAAATCACTAGAATTAAATCACGACTCAAAAAATAAAAAT
** **
3229721 GATAAGAATTAAACCATGAGTCAGCAAATGAAAATGATCAA
65 GATAAGAATTAAACCACCAGTCAAAAAATGAAAATGATCAA
* * *
3229762 GATTAAATC-TCGAGTCAGAAAATAAAAA-CATCTAGGATTAAA-CTATGACTCAAAAAATAAAA
1 GATTAAACCAT-GAGTCAGAAAATAAAAATCA-CTAGAATTAAATC-ACGACTCAAAAAATAAAA
* * *
3229824 ATGACTCA-AATTAAATCACCAGTCAAAAAATGAAAATGATCGA
63 ATGA-TAAGAATTAAACCACCAGTCAAAAAATGAAAATGATCAA
* *
3229867 GATTAAACCATGAGTCAAAAAAGAAAA
1 GATTAAACCATGAGTCAGAAAATAAAA
3229894 CGATAATGAA
Statistics
Matches: 110, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
104 2 0.02
105 90 0.82
106 18 0.16
ACGTcount: A:0.53, C:0.12, G:0.14, T:0.21
Consensus pattern (105 bp):
GATTAAACCATGAGTCAGAAAATAAAAATCACTAGAATTAAATCACGACTCAAAAAATAAAAATG
ATAAGAATTAAACCACCAGTCAAAAAATGAAAATGATCAA
Found at i:3230039 original size:35 final size:35
Alignment explanation
Indices: 3230000--3241081 Score: 1504
Period size: 35 Copynumber: 312.2 Consensus size: 35
3229990 AAACAACTCG
*
3230000 GATTAAATCATGAGTCAAAAAATAAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3230035 GATTAAACCATGGGTCAGAAAATGAAAACGATAGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3230070 GATTAAATCATGGGTTAGAAAATGAAAACGA-CTGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
*
3230105 GATTAAATCATGAGTGAAAAAATGAAAATGATC-A
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * * *
3230139 GTATTAAATCACAAGCCAAAAAAATAAAAATGATCAA
1 G-ATTAAATCATGAGTC-AAAAAATGAAAATGATCGA
* * *
3230176 AATTAAATCATGAGTCAGAAAATGAAAATGATCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3230211 GATTAAACCACGAGTCAAAAAATGAAAATGAT--A
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3230244 -ATTAAAATTATTGAAATTAAATTACGAGTCAGAAAATGAAAAT-GA
1 GATT-AAATCA-TG-AGTCAAA--A--AAT--GAAAATG---ATCGA
* *
3230289 TTGGGATTAAAATGA-GAGTTAAAAAATGAAAATGATCGA
1 ----GATT-AAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
3230328 AATTAAAGCATGAGTCAAAAAATGAAAACAATTGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * ** *
3230363 GACTAAACCTTAAGTGAGAAAATGAAAACCA-CCA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * **
3230397 GGATTAAATCACAAGTCAGAAAATGAAAGCGATC-A
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3230432 GGATTAAA-CAATGAGTCAGAAAATGAAAAATGATCGG
1 -GATTAAATC-ATGAGTCAAAAAATG-AAAATGATCGA
* * * ** * * *
3230469 GACTATACCACAAGTCAATAAATGAAAATGACCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3230504 GATTAAATCATGAGTCAAAAAATAAAAATGA-CAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * * * *
3230538 GGATTAAA-CAATGCA-TTGAAAAATTAAAACGATAGG
1 -GATTAAATC-ATG-AGTCAAAAAATGAAAATGATCGA
* ** * * ** * *
3230574 GATTAAAGCACAAGTTAGAAAATGTAAAACAATAGG
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * ** *
3230610 GATTAAACCATAAGTCAAAAAGGGAAAATGACCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3230645 GATTAAACCATGAGTTAAAAAGTGAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3230680 AATTAAATAACGAATCAAAAAATAAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3230715 CATTAAATCACGAGTCAAAGAAATAAAAATGATCTA
1 GATTAAATCATGAGTCAAA-AAATGAAAATGATCGA
* * * * * *
3230751 AATCAAATCACGAGCCAGAAAATGAAAATGACCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
3230786 GATTAAACCACT-AGTCAAGAAACAAAAATGACCAA
1 GATTAAATCA-TGAGTCAAAAAATGAAAATGATCGA
* ** * *
3230821 AATTAAATCACAAGTTAGAAAAT-AAAATGATC-A
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *** * *
3230854 AAGTTAAATCA-GAAGTCTAAAACCAAAAACGA-CTA
1 GA-TTAAATCATG-AGTCAAAAAATGAAAATGATCGA
* * * * * *
3230889 GAATTAAACCACGAGTTAGAAAATTAAAACAGCAT-G-
1 G-ATTAAATCATGAGTCAAAAAATGAAAA-TG-ATCGA
* ** * * * * *
3230925 GATTAAACCACAAGACAAAGAATGAAAATCACCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3230960 GATGAAACCA-GCAGTCAAAAAATGAAAAATGATTGG
1 GATTAAATCATG-AGTCAAAAAATG-AAAATGATCGA
* * * * * ** * *
3230996 GAATAAACCATGAGTTAGAAAATGAAGACAATAGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** *
3231031 GATTGAACCACAAGTCAAAGAAA-GAAAAATGA-CTA
1 GATTAAATCATGAGTCAAA-AAATG-AAAATGATCGA
* * * * * *
3231066 GAATTAAATCGTGAGTTAGAAAACGAAAACGATGGA
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** * **
3231102 AATTAAACCACAAGTCAGAAAATGAAAACAATC-A
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
*
3231136 GGATTAAATCATGAGTC--AAAA--AAAA--ATCGG
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3231166 GATTAAACCATGAGT----AAAT-AAATTGA-CTTA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
** * * *
3231196 GATTAAATCACAAGTCAAAATATGAAAACGATCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** *
3231231 GATTAAGCCAT-ATGT-AAGAAAATGAAAACGATCGA
1 GATTAAATCATGA-GTCAA-AAAATGAAAATGATCGA
* * *
3231266 GATTAAATCATGAGTCAAAAACTAAAAATGATTG-
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * * **
3231300 GTATTAAATCACAAGCCAAAGAAATAAAAATGATTAA
1 G-ATTAAATCATGAGTCAAA-AAATGAAAATGATCGA
* * * *
3231337 AATTGAATCATAAGTCAAAATATGAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3231372 GATTAAACCATGAGTTAGAAAACAAAAACGATAATGAAAATTA-CCA
1 GATTAAATCATGAG-T------C--AAA--A-AATGAAAATGATCGA
* * ** * *
3231418 TAATTAAATTACTAGT-AAGAAAATGAGAATGATCGG
1 -GATTAAATCATGAGTCAA-AAAATGAAAATGATCGA
* * * * * *
3231454 GGTCAAAACATGAGAT-AGAAAAA-GAAAACGATTGG
1 GATTAAATCATGAG-TCA-AAAAATGAAAATGATCGA
* * * * * * ** *
3231489 GACTAAACCCTAAGTGAGAAAATGAAAACCA-CTA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* ** ** *
3231523 GGATTAAACCACCAGTCAAAAAATGAAAGCGATCGG
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3231559 GATTCAATGATGAGCCAAAAAATGAAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * * *
3231595 GATTATACCATGAGTCAAAAAATGAAAACGAT-TA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3231629 GGATTAAATCATGAGTCAAAAAATAAAAATGATTGG
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * ** * *
3231665 GATTAAA-CAACGGGTCGAAAAATGAAAACAATTGG
1 GATTAAATC-ATGAGTCAAAAAATGAAAATGATCGA
*
3231700 GATTAAATCATGAGTCAAAAAATAAAAATGAT-GA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* ** * * * * * *
3231734 G-TCAAAGAATGAAAATGACCAATATTAAATTAGGAGTCAAAGA
1 GATTAAATCATG--AGTCA-AAAAATGAAA--ATGA-TC---GA
* * * * * *
3231777 AATAAAAATGAATAGAATCAAATCACGAGTCAGAAAATGAAAATTACTA
1 GAT-TAAAT-CAT-GAGTCAAA--A--AAT--GAAAATG---A-T-CGA
* *
3231826 GGATTAAACCACT-AGTCAAGAAATGAAAATGA-CTGA
1 -GATTAAATCA-TGAGTCAAAAAATGAAAATGATC-GA
** * * ***
3231862 -ATTTAAATCACAAGTCAGAAAATAAAAATGAAAAA
1 GA-TTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** * * * *
3231897 AATGAAATCACAAGTCTAAAACTAAAAATGA-CTGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * * * * *
3231932 GATTAAA-CTAAGAGTAAAAAAATTAAAAAGATAGG
1 GATTAAATC-ATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
3231967 GATTAAACCACGAGTCAAAGAATGAAAACG-CCTAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * ** * *
3232002 GATGAAACCACCAGTTAGAAAATGAAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * * * * *
3232038 GATTAAACCACGAGTCAAAAAATTAAGAT-AACAGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * * * *
3232073 GATTAAACCATGAGTCAGAGAAATAAAAATGACCAA
1 GATTAAATCATGAGTCA-AAAAATGAAAATGATCGA
* * * * * *
3232109 AATTAAATCACGAGTCAGAAAATTAAAACGAT-AA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** *
3232143 GAATTAAACCGTGAGTCAGCAAATGAAAATAATC-A
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
3232178 GGATTAAATC-TCTAGTCAGAAAAT-AAAAACAACCA
1 -GATTAAATCAT-GAGTCAAAAAATGAAAATGATCGA
* * *
3232213 GGATTAAACCATGACTCAAAAAATAAAAATGACTCG-
1 -GATTAAATCATGAGTCAAAAAATGAAAATGA-TCGA
* *
3232249 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3232284 GATTAAACCATGGGTCAGAAAATGAAAATGACCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3232319 GATTAAACCATGGGTTAGAAAATGAAAACGA-CTGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* *
3232354 GATTAAATCATGAGTGAAAAAATGAAAATGATTG-
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3232388 GTATTAAATCA-GAAGCCAGAGAAATAAAAATGATCAA
1 G-ATTAAATCATG-AGTCA-AAAAATGAAAATGATCGA
* * * *
3232425 AATTAAATCACGAGTCAAAAAATGAAAATAATCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
*
3232460 GATTAAATCACGAGTCAAAAAATGAAAATGA-C-A
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3232493 -ATTAAA--ATTA-TC--AAAATTACATTATGAGTCAGA
1 GATTAAATCATGAGTCAAAAAATGA-A-AATGA-TC-GA
* * * **** *
3232526 AAATAAA-AATGA-T--TGGGATTAAAATGA--GA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * * * *
3232555 G-TTAAAAAATGAAAATGATCAAAATTAAAGCATGAGTCAGAA
1 GATTAAATCATG--AGTCA-AAAAATGAAA--ATGA-TC-G-A
* * * * * * * * *
3232597 AATGAAAACGATTGGGACCAAACCTTGAGTGAGAAAATGAAAACCACCA
1 GATTAAATC-A-TGAG-TCAAA----AAAT--GAAAATG---A--TCGA
* * * ** *
3232646 GGATTAAACCGTAAGTCAAAAAATGAAAGCGAT-TA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3232681 GGATTAAA-CAACGAGTC-AAAAATGAAAAATGATCGG
1 -GATTAAATC-ATGAGTCAAAAAATG-AAAATGATCGA
* * * * * *
3232717 GACTATACCACGAGTCAATAAATGAAAATGATCGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3232752 GATTAAATCATGAGTCAAAAAATAAAAATGATAGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3232787 GATTAAA-CAATGCA-TCGAAAAATGAAAACGATAGG
1 GATTAAATC-ATG-AGTCAAAAAATGAAAATGATCGA
* * ** * * ** * *
3232822 GATTAGAGCACAAGTTAGAAAATGTAAAACAATGGG
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * * *
3232858 GATTAAACCATAAGTC-AAAAAGGAAAAATGACCGA
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * *
3232893 GATTAAACCATGAGTCAAAAAATGAAAACGATCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3232928 AATTAAATGACGAGTCAAAAAATGAAAATGACCG-
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * *
3232962 GCATTAAATCACAACTCAAAGAAATAAAAATGATCGA
1 G-ATTAAATCATGAGTCAAA-AAATGAAAATGATCGA
* * * * *
3232999 AATCAAATCACGAGCCAGAAAATGAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3233034 GATTAAACCACT-AGTCAAGAAACGAAAATGACCAA
1 GATTAAATCA-TGAGTCAAAAAATGAAAATGATCGA
* ** * *
3233069 AATTAAATCACAAGTTAGAAAAT-AAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *** *
3233103 -AGTTAAATCA-GAAGTCTAAAACCAAAAACGATC-A
1 GA-TTAAATCATG-AGTCAAAAAATGAAAATGATCGA
* * * * *
3233137 GAATTAAACCACGAGTTAGAAAATTAAAATGGCAT-G-
1 G-ATTAAATCATGAGTCAAAAAATGAAAAT-G-ATCGA
* ** * * *
3233173 GATTAAACCACAAGTCAAAGAATGAAAATGACCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3233208 GATGAAA-C-TAGCAGTCAGAAAATGAAAAACGATTGG
1 GATTAAATCAT-G-AGTCAAAAAATG-AAAATGATCGA
* * * * * * *
3233244 GATTAAACCATGAGTTAGAAAATGAAGA-CAACGGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * * *
3233279 GATTGAACCACGAGTCAAAGAAA-GAAGAATGA-CTA
1 GATTAAATCATGAGTCAAA-AAATGAA-AATGATCGA
* ** * * *
3233314 GAATTGAATCGCGAGTTAGAAAATGAAAATGATGGA
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** * **
3233350 AATTAAACCACAAGTCAGAAAATGAAAACAATC-A
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3233384 GGATTAAATCATGAGTCAAAAAATAAAAAAAGACCGA
1 -GATTAAATCATGAGTCAAAAAAT-GAAAATGATCGA
* ** *
3233421 GATTAAACCACAAGT----AAAT-AAATTGACTC-A
1 GATTAAATCATGAGTCAAAAAATGAAAATGA-TCGA
* * * *
3233451 AATTAAATCACGAGTTAAAAAATGAAAACGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3233486 GATTAAATTATGAGTCAAAAACTAAAAATGATCG-
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * * * *
3233520 GTATTAAATCACAAGCCAGAGAAATAAAAATGGTCGA
1 G-ATTAAATCATGAGTCA-AAAAATGAAAATGATCGA
* * *
3233557 AATTAAATCATAAGTCAAAATATGAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * **
3233592 GATTAAACCATGAGTTAGAAAACCAAAATGA-C-A
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3233625 -ATGAAA--ATTA--C-CAAAATTAAATTACT-AGTAAGAA
1 GATTAAATCATGAGTCAAAAAATGAAA--A-TGA-T-CG-A
* * * * *
3233659 AATGAGAATGATCGGGGTCAAAACATGAGTTGGAAAATGAAAACGATCA
1 GATTA-AATCAT--GAGTCAAAA-A--A--T-GAAAATG--ATCG---A
* * * * * ** *
3233708 GGACTAAACCCTGAGTGAGAAAATGAAAACCA-CCA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3233743 GGATTAAACCATGAGTCAAAAAATGAAAGTGATCGA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
3233779 GATTCAATTATGAGCCAGAAAATGAAAAATGATTGG
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * * * *
3233815 GATTATACCATGAATCAAAAAATAAAAAGGATC-A
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3233849 GGATTAAATTACGAGTCAAAAAATAAAAATGAT-AA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3233884 GGATTAAATAACGGGTCAAAAAATGAAAACGA-CTA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3233919 GGATTAAATCATGAGTCCAAAAATAAAAATGATAGG
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3233955 GATGAAA-CAATGCA-TCAAAAAATGAAAATGATAGG
1 GATTAAATC-ATG-AGTCAAAAAATGAAAATGATCGA
* * ** * *
3233990 GATTAAAGCATGAGTTAAAAAATGTAAAACAATAGG
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * * * *
3234026 GATCAAACCATAAGTCAAAAAGTGAAAATGATCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3234061 GATTAAACCAGGAGTCAGAAAATGAAAATAACCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3234096 AATTAAA-CGATGAGTCAAAAAATGAAAATGACCAA
1 GATTAAATC-ATGAGTCAAAAAATGAAAATGATCGA
* * ** *
3234131 CATTAAATCAGGAGTCAAAGAAAAAAAAATGAT-TA
1 GATTAAATCATGAGTCAAA-AAATGAAAATGATCGA
* * *
3234166 GAATCAAATCATGAGTCAGAAAATGAAAATGA-CTA
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3234201 GGATTAAACCACT-AGTCAAGAAATGAAAATGATTGA
1 -GATTAAATCA-TGAGTCAAAAAATGAAAATGATCGA
** * * *
3234237 -ATTTAAATCACAATTCAGAAAA--AAAATGA-CAAA
1 GA-TTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* ** * * * *
3234270 AATTAAATCACAAGTCTAAAACTAAAAATGATTG-
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3234304 GATTAAA-CTAAGAGTTAAAAAATTAAAACGA-CAGG
1 GATTAAATC-ATGAGTCAAAAAATGAAAATGATC-GA
* * *
3234339 GATTAAACCACGAGTCAAAGAATGAAAATGA-CTGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * ** * * * *
3234374 GATGAAACCACCAGTTAGAAAATGAAAAATGATTGG
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * * * * * * *
3234410 GATTAAACCACGAGTTAGAAAATTAAGA-CAACGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * * *
3234444 GGATTAAGCCATGAGTCAGAGAAATAAAAATGA-CCA
1 -GATTAAATCATGAGTCA-AAAAATGAAAATGATCGA
* * *
3234480 GAATTAAATCACGAGTCAAAAAATTAAAATGAT-AA
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* **
3234515 GAATTAAATCGTGAGTCAGCAAATGAAAATGATC-A
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
3234550 GGATTAAATCTTGAGTCAGAAAAT-AAAAACAACTA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3234585 GGATTAAACCATGACTCAAAAAATAAAAACGA-CTTA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
** *
3234621 GATTAAATCACAAGTCAAAAAATAAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
3234656 GATTAAACCATGGGTTAGAAAATGAAAACGATTGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3234691 GATTAAATCATGAGTGAAAAAATGAAAATGAACG-
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * * * *
3234725 GTATTAAATCACAAGCCAGAGAAATAAAAATGATCAA
1 G-ATTAAATCATGAGTCA-AAAAATGAAAATGATCGA
* * *
3234762 AATTAAATCATGAGTCAGAAAATGAAAAATGATCGG
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * * * *
3234798 GATTATACCACGAGTCAATAAATGAAAATGATCGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3234833 GATTAAATCATGAGTCAAAAAATAAAAATGATTGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
3234868 GATT-AAGCAACGCA-TTGAAAAATGAAAATGATAGG
1 GATTAAATC-ATG-AGTCAAAAAATGAAAATGATCGA
* ** * * ** * *
3234903 GATTAAAGCACAAGTTAGAAAATGTAAAACAATGGG
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * ** * *
3234939 GATTAAACCATAAGTCAAAAAGGGAAAATGACCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3234974 GATTAAACCATGAGTCAAAAAATGAAAATGACCG-
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3235008 GCATTAAATCATGAGTCAAAGAGAT-AAAAAGATCGA
1 G-ATTAAATCATGAGTCAAA-AAATGAAAATGATCGA
* * * *
3235044 AATCAAATCACGAGCCAAAAAATGAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3235079 GATTAAACCACT-AGTCAAGAAATGAAAATGACCAA
1 GATTAAATCA-TGAGTCAAAAAATGAAAATGATCGA
* ** * *
3235114 AATTAAATCACAAGTTAGAAAAT-AAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** ** ** * *
3235148 -AGTTAAATCA-GAAGT-GTAAAACCAAAAACAACCA
1 GA-TTAAATCATG-AGTCAAAAAATGAAAATGATCGA
* * * * * *
3235182 GAATTAAAACCACGAGTTAGAAAATTAAAACGGCAT-G-
1 G-ATT-AAATCATGAGTCAAAAAATGAAAA-TG-ATCGA
* * * * * *
3235219 GATTAAACCACGAGTTAAAGAATGAAAATGACCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
3235254 GATGAAACCA-GAAGTCAGAAAATGAAAAACGATTGG
1 GATTAAATCATG-AGTCAAAAAATG-AAAATGATCGA
* * * ** * *
3235290 GATTAAACCATGAGTTAGAAAAT-AAAGACAATGGG
1 GATTAAATCATGAGTCAAAAAATGAAA-ATGATCGA
* * * * *
3235325 GGTTGAACCATAAGTCAAAGAAA-GAAAAATGAATAGA
1 GATTAAATCATGAGTCAAA-AAATG-AAAATG-ATCGA
* ** * * *
3235362 G-TTAAATTACAAGTTAGAAAATGAAAATGATGGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3235396 AATTAAACCATGAGTCAGAAAATGAAAACGAT-TA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3235430 GGATTAAATCATGAGTCAAAAAATAAAAAAGACCCCA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGA-TCGA
* ** ** * * * * *
3235467 CGAGTAAAAAATTTGAC-TAAGAT-TAAATCA-CGA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* ** * * * * * *
3235500 G-TCAAAAAATGA---AAACAATCGAGATTAAGCCA
1 GATTAAATCATGAGTCAAAAAAT-GAAAATGATCGA
* ** * *
3235532 TATGTCAAAAAATGA---AAACAATTGAGATTAAATCAT-GA
1 GAT-T-AAATCATGAGTCAAA-AAAT--GA--AAATGATCGA
* ** ** * * * * *
3235570 G-TCAAAAAATGA---AAACGATCGAGATTAAACCA
1 GATTAAATCATGAGTCAAAAAAT-GAAAATGATCGA
* ** * ** * * * *
3235602 TGAGTCAAAAAATAAAAAC-GATAATGAAAATTACT-AA
1 -GA-TTAAATCAT-GAGTCAAAAAATGAAAATGA-TCGA
* * * * * *
3235639 AATTAAATTACT-AGTAAGAAAATGAGAATGACCGA
1 GATTAAATCA-TGAGTCAAAAAATGAAAATGATCGA
* * * * * * * *
3235674 GGTCAAAACACGAGTTAGAAAATGAAAACGA-CTGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * * * * * ** *
3235709 GAGTAAACCCTGAATGAGAAAATGAAAACCA-CCA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* ** **
3235743 GGATTAAACCACAAGTCAAAAAATGAAAGCGATCGA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3235779 GTTTCAA-CGATAAGTCAGAAAAA-GAAAAACGATCGG
1 GATTAAATC-ATGAGTCA-AAAAATG-AAAATGATCGA
* * ** * *
3235815 GATTATACCACAAGTCAAAAAATGAAAACGATCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3235850 GATTAAATCATGAGTCAAAAAATAAAAATGATAGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3235885 GATTAAA-CAATGGGAT-GAAAAATGAAAACGATAGG
1 GATTAAATC-ATGAG-TCAAAAAATGAAAATGATCGA
* * * * ** ** *
3235920 GATTAGAGCATGAGTTAGAAAATGTAAAACAAAAGG
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* ** * *
3235956 GATTAAACCACAAGTCAAAAAGTGAAAATGATTGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3235991 GATTAAACCATGAGTCAAAAAATGAAAA-CAACCA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
**
3236025 GAATTAAA-CGACAAGTCAAAAAATGAAAATGATC-A
1 G-ATTAAATC-ATGAGTCAAAAAATGAAAATGATCGA
* * * *
3236060 GCATTAAATCACGAGTCAAAGAAATAAAAATGACCAA
1 G-ATTAAATCATGAGTCAAA-AAATGAAAATGATCGA
* * ** * *
3236097 AATCAAATCACAAATCAGAAAATGAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* ** ** *
3236132 GATTAAACCACT-AGTCAAGGAATGAAAACAATCAA
1 GATTAAATCA-TGAGTCAAAAAATGAAAATGATCGA
* * * *
3236167 AATTAAATCACGAGTCAGAAAATAAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* ** * * * *
3236202 AATTAAATCATGAGTGTAAAACTAAAAATGACCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
3236237 GATTAAACCACGAGTCAGAAAATTAAAACTGATAGG
1 GATTAAATCATGAGTCAAAAAATGAAAA-TGATCGA
* * * * * * * *
3236273 GATTAAACCACGGGTCAGAGAATGAAAAAGACCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** * **
3236308 GATGAAACCACCAGTCAAAAAATAAAAAATGATTAA
1 GATTAAATCATGAGTCAAAAAAT-GAAAATGATCGA
* * * ** * *
3236344 GATTAAACCATGAGTTAAAAAATGAAGACAATGGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3236379 GATTAAA-CTATGAGTTAGAGAAATAAAAATGA-CCA
1 GATTAAATC-ATGAGTCA-AAAAATGAAAATGATCGA
* * *
3236414 GAATTAAATCACGAGTCAGAAAATGAAAATGAT-GG
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3236449 GAATTAAACCATGAGTTAGAATATGAAAATGA-CTGA
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
** * * *
3236485 GATTAAATCACAAGTCAAAAAATAAAAAATGACCAA
1 GATTAAATCATGAGTCAAAAAAT-GAAAATGATCGA
* ** * *
3236521 GATTAAACCACAAGTCAGAAAATAAAAATGACTCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGA-TCGA
* * * *
3236557 -ATTAAATTATGAGTCAAAAAATGAAAACGACCGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3236591 GATTAAACCATG-GATTAGAAAATGAAAA-CAACTGA
1 GATTAAATCATGAG-TCAAAAAATGAAAATGATC-GA
* * * * ** *
3236626 CATTAAACCATGAGTTAGAAAATGAAAGCGATCGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3236661 GATTAAATGATGAGTCAAAAAATGAAAACGATAGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* ** * *
3236696 GATTAAAGCACAAGTCAAAAAAATGTAAAA-CAACGA
1 GATTAAATCATGAGTC-AAAAAATG-AAAATGATCGA
* *
3236732 GAATTAAATCATAAGTCAAAAAGTGAAAATGA-CAGA
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * * * *
3236768 GATTAAACCATGAGTCAAAAATTGAAAA-CAACCA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3236802 GAATTAAATGATGAGTCAAAAAATGAAAATGA-CTA
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3236837 GTATTAAATCATGAGTCAAAGAAATAAAAATGACCG-
1 G-ATTAAATCATGAGTCAAA-AAATGAAAATGATCGA
* * * * *
3236873 GAGTCAAATCATGAGTCAGAAAATCAAAATGATTGG
1 GA-TTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** ** *
3236909 GATTAAACCACT-AGTC-GAGGATGAAAGCGATAG-
1 GATTAAATCA-TGAGTCAAAAAATGAAAATGATCGA
* * *
3236942 GAATTAAATCACGAGTCAGAAAAT-AAGAATGACCGA
1 G-ATTAAATCATGAGTCAAAAAATGAA-AATGATCGA
* * * * * *
3236978 AATTAAATCACGAGTCTAAAACTAAAAATGA-CCA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * *
3237012 GGATTAAACCACGAGTTAAAAAATTAAAATGGTAGG
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *** *
3237048 GATTAAACCACGAGTTTGATAATGAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *** * * ** *
3237083 GATGAAACCACCTGTTAGAAAATGAAAAACAATCAA
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * ** * * *
3237119 GATTAAACCATAAGTCAGAAAAA-GAGGA-CAACGGG
1 GATTAAATCATGAGTCA-AAAAATGAAAATGATC-GA
* ** * *
3237154 GATTAAATTGA-GAGTCAAAAAACAAAAATGACCAA
1 GATTAAA-TCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
3237189 AATTAAATCTTGAGTCAAAAAATGTGAACGAT-GT
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* ** * * * *
3237223 GAATTAAAACAAAAATGATAAGAAT-TAAATGA-CGA
1 G-ATTAAATCATGAGTCA-AAAAATGAAAATGATCGA
** * * * * * * *
3237258 GTCAAAAAAT-AAGAATGATCAAAATTAAATTAAGAGTCTA
1 G--ATTAAATCATGAGTCA-AAAAATGAAA--ATGA-TCGA
* * * * ** *
3237298 AAATAGAA-AATGA--C-CAGGATTAAATCATGAGTCAGAA
1 GATTA-AATCATGAGTCAAAAAATGAAA--ATGA-TC-G-A
* * *** *
3237335 AATTAAA--ACGA-T--AGGGATTAAACCATGAGTCAGA
1 GATTAAATCATGAGTCAAAAAATGAAA--ATGA-TC-GA
* * * * * *
3237369 GAATGAAAACTACCGAGATGAAACCACCAATCAAAAAATGAAAAATGATCAA
1 G-ATTAAATC-A-TGAG-TCAAA--A--AAT----G-----AAAATGATCGA
* * * *
3237421 GATTAAATCATAAGTTAAAAAATAAAAATGATCGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * ** *
3237456 GATTAAGCCATGGGTCAAAAAATGAAAACAACCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
3237491 GATTCAACCATGGGTTAGAAAATGAAAATGATCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3237526 GATTAAATCATGAGTTAGAAAATGAAAATGATCG-
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * * * *
3237560 GTATTAAATCACAAG-CTAGAGAAATGAAAGTTATCAA
1 G-ATTAAATCATGAGTC-A-AAAAATGAAAATGATCGA
* ** *
3237597 AATTAAATCACAAGTTC-GAAAATGAAAATGATCGA
1 GATTAAATCATGAG-TCAAAAAATGAAAATGATCGA
* * * * *
3237632 GATAAAACCATGAGTCAGAAAATAAAAACGAT--A
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3237665 -ATGAAAACTACCAT-AATTAAATTACAAGTCAAAAAATGAAAAT-GA
1 GAT-TAAA-T--CATGAGTCAAA--A-AA-T--GAAAATG---ATCGA
* * * *
3237710 TTGGGATTGGAA-CGTGAGTTAGAAAATGAAAATGATCGA
1 ----GATT-AAATCATGAGTCAAAAAATGAAAATGATCGA
* * * ** * *
3237749 AATTAAAGCATGAGTCAGAAAATGAAAACAATTGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * ** *
3237784 GACTAAACCCTGAGTGAGAAAATGAAAACCAT-TA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * **
3237818 GGATTAAA-CTACGAATCAGAAAATGAAAGCGATC-A
1 -GATTAAATC-ATGAGTCAAAAAATGAAAATGATCGA
* ** * * *
3237853 GGATTAAGCAACA--AGTCTGAAAATAAAAAAGATCGG
1 -GATTAA--ATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3237889 GATTATACCATGAGTCAAAAAATGAAAACGACCGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* ** * *
3237924 GAATAAATCACAAGTCAAAAAATAAAAATGA-CAGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * ***
3237959 GATTAAA-CAATGCA-TCGAAAAATGAAAACGAGATA
1 GATTAAATC-ATG-AGTCAAAAAATGAAAATGATCGA
* * * * * *
3237994 AATTAAAGCATGAGTCAGAAAATGTAAAA-CAACAGG
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATC-GA
* ** * * *
3238030 GATTAAACCACAAGTCAAAAAGTGAAAATGACCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3238065 GA-TAAACCATGAGTCAAAAAATGAAAATGA-CCA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** *
3238098 AATTTAAATAACAAGTCAAAAAATGAAAATGACCG-
1 GA-TTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3238133 GCATTAAATCACGATTCAAGGAAATAAAAATGACCGA
1 G-ATTAAATCATGAGTCAA-AAAATGAAAATGATCGA
* *
3238170 AATCAAATCACT-AGTCAAAAAATGAAAATGATC-A
1 GATTAAATCA-TGAGTCAAAAAATGAAAATGATCGA
* * ** * *
3238204 GGATTAAACCACT-AGTCAAGAAATGAGCACGA-CTA
1 -GATTAAATCA-TGAGTCAAAAAATGAAAATGATCGA
* * * *
3238239 GAATTAAATCACGAGTTAGAAAAT-ACAAATG-GCTGA
1 G-ATTAAATCATGAGTCAAAAAATGA-AAATGATC-GA
* * * * *
3238275 AATTAAATCATGAGTCTAAAACTAAAAATGATCGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * *
3238310 GTTTAAACCATAAGTCAAAAAATTAAAACGATAGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3238345 GATTAAACCATGAGTTAGAGAATGAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * ** * * *
3238380 CATGAAACCACCAGTTAGAAAATGAAAAATGATCAA
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * **
3238416 GATTAAATCATGAGTCATAAAATGAAGACAAT-GAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCG-A
* * * *
3238451 GATTAAACCATGAGTCAGAGAAATAAAAATGA-CTA
1 GATTAAATCATGAGTCA-AAAAATGAAAATGATCGA
** * ** *
3238486 GAATTAAATCACAAGTCAGAAAATGAAAGCGAT-GG
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3238521 GAATTAAACCACGAGTCAAAAAATGAAAATGATTGG
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * *
3238557 GATTAAATCACGACTTAGAAAATAAAAATGATTGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * * *
3238592 GATTAAGCCATGAGTCAAAAAATAAAAATGAACCA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3238627 GATTAAATCAAGAGCCAAAAAATGAAAATGA-CAGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * * ** *
3238662 GATTAAACCATGGGTCAGAAAATGAAAACAATCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3238697 GATTAAACCATG-GATTAGAAAATGAAAACGA-CTGA
1 GATTAAATCATGAG-TCAAAAAATGAAAATGATC-GA
3238732 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3238767 GACTAAACCATGAGTTAGAAAATGAAAATGAT--A
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * ** * * **
3238800 -ATGAAAATTATTGAATTTAAATTATG--AGTCA-AAA
1 GAT-TAAATCA-TG-AGTCAAAAAATGAAAATGATCGA
* * * * *
3238834 AATGAAA--ATGA-TC--GAGATCAAAATG--CGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * *** * * *
3238862 G-TTAAAAAATGAAAATGACTGGAATTAAAAGCACGAGTCCGAA
1 GATTAAATCATG---A-GTCAAAAAATGAAA--ATGA-T-CG-A
* * * * * *
3238905 AATGAAAATGACTGGGAT-AAAACCTTAGTGAGAAAATGAAAGAGATCAA
1 GAT-TAAATCA-TGAG-TCAAAA----AAT--GAAAAT------GATCGA
* * *
3238954 GATTAAA-CAACGAGTCAGAAAATGAAAAATGA-CTGG
1 GATTAAATC-ATGAGTCAAAAAATG-AAAATGATC-GA
* * * *
3238990 GATTATACCATGAGTCAAAAAATGAAAACGACCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3239025 GAATAAAGCATGAGTCAAAAAATAAAAATGA-CAGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * * * *
3239060 GATTAAA-CAACGTGTCAGAAAATGAAAATGATAGG
1 GATTAAATC-ATGAGTCAAAAAATGAAAATGATCGA
* * * * * * * *
3239095 GATTAGAGCATGAATTAGAAAATGTAAAA-CAACGGG
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATC-GA
* * *
3239131 GATTAAATCGTAAGT-AAAAAGTGAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3239165 GATTAAACCATGAGTCAGAAATTGAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
3239200 AATTAAATGACAAGTTAAAAAATGAAAATGA-CTA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3239234 GCATTAAATCATGAGTTAAGGAAATAAAAATGATCG-
1 G-ATTAAATCATGAGTCAA-AAAATGAAAATGATCGA
* * * *
3239270 GAATCAAATCATGAGTCAGAAAATGAAAATTA-CTA
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3239305 GGATTAAACCACT-AGTCAAGAAATGAAAATGATTGA
1 -GATTAAATCA-TGAGTCAAAAAATGAAAATGATCGA
* * * *
3239341 AATTAAATCATGAGTTAGAAAATAAAAATGATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
3239376 AATTAAATCACGAGTCTAAAACTGAAAATGATTGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* ** * * * *
3239411 GATTAAACCACAAGTCAAAAAATTAAAA-CAACAGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * * * * ** *
3239446 GATTATACCATGAGTTAGAGAATGAAAACAATTGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * ** *
3239481 GAGGAAACCACCAGTCAAAAAATGAAAAACGATC-A
1 GATTAAATCATGAGTCAAAAAATG-AAAATGATCGA
* * * * ** * *
3239516 GGATTAAACCACGAGTCAGAAAATGAAGACAATGGG
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
3239552 GACTAAACCATGAGTTAGAGAAATAAAAATGAAC-A
1 GATTAAATCATGAGTCA-AAAAATGAAAATGATCGA
* * *
3239587 GAATTAAATCACGAGTCAGAAAATGAAAATGAT-GG
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3239622 GAATTAAATCACGAGTTAGAAAATGAAAACGATC-A
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * * *
3239657 GGATTAAATCACAAGTTAGAAAATAAAAATGATCGA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3239693 GATTAAA-CTACGAGTCAGAAAATAAAAATGACCCA
1 GATTAAATC-ATGAGTCAAAAAATGAAAATGATCGA
* *
3239728 AATTAAATCATGTGTCAAAAAATGAAAATGA-CTGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* * * ** *
3239763 GATTAAACCAT-AGGTCAGAAACTGAAACCGA-CAA
1 GATTAAATCATGA-GTCAAAAAATGAAAATGATCGA
* * * *
3239797 GGATTAAATTATGGGTTAGAAAATGAAAATGA-CGGA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
*
3239833 GATTAAATCATGAGTTAAAAAATGAAAATGATCG-
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * * *
3239867 GTATTAAATCACAAGCCAAAGAAATAAAAATGATTGA
1 G-ATTAAATCATGAGTCAAA-AAATGAAAATGATCGA
* * * * **
3239904 AATTAGATCATAAGTCAGAAAATGAAAACAATCGA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3239939 GATTAAACCATGAGTCAGAAAATGAAAACGATAATGAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGAT--CG-A
* * * * *
3239977 AATTACTGAAATTA-AACTGCAAGTCAGAAATGAAAATGACCCG-
1 GA-T--T-AAATCATGAGT-CAA---A-AAATGAAAATGA-TCGA
* * * * * *
3240020 GAATAAAACATGAGTTAACAAATAAAAATGA-CGG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
3240054 GAATTAAAGCACGAGTTAGAAAATGAAAACGACCG-
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * ** *
3240089 GGTCTAAACCCTGAATGAGAAAATGAAAACCA-CTA
1 GAT-TAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3240124 TGATTAAACCATGAGTCAAAAAAT-AAAAGTCATCGG
1 -GATTAAATCATGAGTCAAAAAATGAAAA-TGATCGA
** * *
3240160 GATTAAA-CGATGAGTCAAAAAATGAAAAACAACTGG
1 GATTAAATC-ATGAGTCAAAAAATGAAAATGATC-GA
* * * * *
3240196 GATTATACCATGAGTCAAAAAATGAAAA-CAACCA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3240230 GGATTAAATCATGAGTCAAAATATAAAAATTATAGG
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
** * *
3240266 GATTAAA-CAACATGTCTAAAAAA-GAAAATG-CCAGG
1 GATTAAATCATGA-GTC-AAAAAATGAAAATGATC-GA
* ** * ** * *
3240301 GATTAAAGCACAAGTCAAAAAATATAAAACAATAGG
1 GATTAAATCATGAGTCAAAAAAT-GAAAATGATCGA
* * *
3240337 GATTAAACCATGAGTCAAAAAGTGAAAATGATCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3240372 GATTAAACCACGAGTCAAAAAATGAAAAT-ACCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3240406 AATTGAATGATAAGTTAAAAAATGAAAATGA-CTG-
1 GATTAAATCATGAGTCAAAAAATGAAAATGATC-GA
* *
3240440 GCATTAAATCATGAGTCAAAGAAATAAAAATGATTG-
1 G-ATTAAATCATGAGTCAAA-AAATGAAAATGATCGA
* * *
3240476 GAATCAAATCATGAGTCAGAAAATGAAAATGA-CTA
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * *
3240511 GGATTAAACCACT-AGTCAAGAAACT-AAAATGA-CCA
1 -GATTAAATCA-TGAGTCAA-AAAATGAAAATGATCGA
** * * * * *
3240546 GAATTAAATCACAAGTTAGAAAATAAAAATGACCAA
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
3240582 AATTAAATCATGAGTCTAAAACTGAAAA-CAACCA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * *
3240616 GGATTAAACTACA--AGTCAAAAAATTAAAACGATGGG
1 -GATTAAA-T-CATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3240652 GATTAAACCATGAGTCAGAGAATGAAAATGACCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * **** *
3240687 GATGAAACCACCTTTCAAAAAATGAAAAACT-ATCGG
1 GATTAAATCATGAGTCAAAAAATG-AAAA-TGATCGA
* ** * * *
3240723 GATTAAACCACAAGTCAAAAAATG--AAGGCAACGGG
1 GATTAAATCATGAGTCAAAAAATGAAAATG-ATC-GA
* * * * * *
3240758 GATTAAACCACGAGTCGGAGAAATAAAAATGA-CCA
1 GATTAAATCATGAGTC-AAAAAATGAAAATGATCGA
** *
3240793 GAATTAAATCACAAGTCAAAAAATGAAAATGATAG-
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3240828 GAATTAAACCACGAGTCAGAAAATGAAAACGACCGA
1 G-ATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3240864 GATTAAATCACGAGCCAGAAAATAAAAATGAAT-GG
1 GATTAAATCATGAGTCAAAAAATGAAAATG-ATCGA
* * * *
3240899 GATT-AATCCACGAGTCAAAAAATGAAAA-CAACTA
1 GATTAAAT-CATGAGTCAAAAAATGAAAATGATCGA
* * * * *
3240933 GGATTAAACCATGGGTTAGAAAATGAAAATGACCGA
1 -GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
* *
3240969 GATTAAATCATGAGTTAGAAAATGAAAACT-ATC-A
1 GATTAAATCATGAGTCAAAAAATGAAAA-TGATCGA
** * * * *
3241003 GTATTAAATCACAAGCCAGAGAAATAAAAATGATCAA
1 G-ATTAAATCATGAGTCA-AAAAATGAAAATGATCGA
* ** * * *
3241040 AATTAAATCACAAGTCAAAAAATAAAAATTATCAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
3241075 GATTAAA
1 GATTAAA
3241082 CCACAAGTCA
Statistics
Matches: 8039, Mismatches: 2281, Indels: 1454
0.68 0.19 0.12
Matches are distributed among these distances:
27 22 0.00
28 9 0.00
29 41 0.01
30 38 0.00
31 22 0.00
32 28 0.00
33 93 0.01
34 397 0.05
35 5353 0.67
36 1548 0.19
37 105 0.01
38 36 0.00
39 28 0.00
40 6 0.00
41 49 0.01
42 19 0.00
43 22 0.00
44 19 0.00
45 20 0.00
46 31 0.00
47 59 0.01
48 19 0.00
49 22 0.00
50 29 0.00
51 10 0.00
52 5 0.00
53 2 0.00
54 4 0.00
56 3 0.00
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (35 bp):
GATTAAATCATGAGTCAAAAAATGAAAATGATCGA
Found at i:3230076 original size:70 final size:71
Alignment explanation
Indices: 3230000--3268702 Score: 3431
Period size: 70 Copynumber: 544.5 Consensus size: 71
3229990 AAACAACTCG
* * * *
3230000 GATTAAATCATGAGTCAAAAAATAAAAATGATCGAGATTAAACCATGGGTCAGAAAATGAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3230065 AT-AGA
66 ATCAGA
* * * * * * * *
3230070 GATTAAATCATGGGTTAGAAAATGAAAACGA-CTGAGATTAAATCATGAGTGAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAAT
3230134 GATCAG-
65 GATCAGA
* * * * *
3230140 TATTAAATCACAAGCCAAAAAAATAAAAATGATCAAAATTAAATCATGAGTCAGAAAATGAAAAT
1 GATTAAATCACGAGTC-AAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
3230205 GATCA-A
65 GATCAGA
* * * * *
3230211 GATTAAACCACGAGTCAAAAAATGAAAATGAT--A-ATTAAAATTATTGAAATTA-AATTACGAG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATT-AAATCA-TG-AGTCAGAA--A--A-
*
3230272 TCAGAAAATGA--AAA
58 T--GAAAATGATCAGA
* * * ** * * * * *
3230286 TGATTGGGATTAAAATGAGAGTTAAAAAATGAAAATGATCGAAATTAAAGCATGAGTCAAAAAAT
1 -GATT--AAATCACG----AGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAAT
** * *
3230351 GAAAACAAT-TGG
59 GAAAATGATCAGA
* * *** * * * ** * ** **
3230363 GACTAAACCTTAAGTGAGAAAATGAAAACCA-CCAGGATTAAATCACAAGTCAGAAAATGAAAGC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
3230427 GATCAG-
65 GATCAGA
* * * * * * **
3230433 GATTAAA-CAATGAGTCAGAAAATGAAAAATGATCGGGACTATACCACAAGTCA-ATAAATGAAA
1 GATTAAATC-ACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGA-AAATGAAA
*
3230496 ATGACCA-A
63 ATGATCAGA
* * * * *
3230504 GATTAAATCATGAGTCAAAAAATAAAAATGA-CAAGGATTAAA-CAATGCATTGA-AAAATTAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATC-ATG-AGTCAGAAAATGAAA
* *
3230566 ACGAT-AGG
63 ATGATCAGA
* * * * * ** * * * * *
3230574 GATTAAAGCACAAGTTAGAAAATGTAAAACAATAGGGATTAAACCATAAGTCA-AAAAGGGAAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAA-TGAAAA
*
3230638 TGA-CCGA
64 TGATCAGA
* * * * * * * * * * *
3230645 GATTAAACCATGAGTTAAAAAGTGAAAATGATCGAAATTAAATAACGAATCAAAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3230710 ATC-GA
66 ATCAGA
* * * * * *
3230715 CATTAAATCACGAGTCAAAGAAATAAAAATGATCTAAATCAAATCACGAGCCAGAAAATGAAAAT
1 GATTAAATCACGAGTCAAA-AAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3230780 GA-CCGA
65 GATCAGA
* * * * * * * ** *
3230786 GATTAAACCACTAGTCAAGAAACAAAAATGACCAAAATTAAATCACAAGTTAGAAAAT-AAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3230850 ATCAAA
66 ATCAGA
* ** * * * * * *
3230856 G-TTAAATCA-GAAGTCTAAAACCAAAAACGA-CTAGAATTAAACCACGAGTTAGAAAATTAAAA
1 GATTAAATCACG-AGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
* *
3230918 -CAGCATG-
64 TGATCA-GA
* * * * * * * * * * *
3230925 GATTAAACCACAAGACAAAGAATGAAAATCACCAAGATGAAACCA-GCAGTCAAAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATG-AGTCAGAAAATG-AAAA
* *
3230989 TGAT-TGG
64 TGATCAGA
* * * * * * * ** * * * * ** *
3230996 GAATAAACCATGAGTTAGAAAATGAAGACAATAGGGATTGAACCACAAGTCA-AAGAAAGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAA-AATG-AAAA
3231060 TGA-CTAGA
64 TGATC-AGA
** * * ** * * * * ** **
3231068 -ATTAAATCGTGAGTTAGAAAACGAAAACGATGGAAATTAAACCACAAGTCAGAAAATGAAAACA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3231132 ATCAG-
66 ATCAGA
* * * *
3231137 GATTAAATCATGAGTC---AAA-AAAAA--ATCGGGATTAAACCATGAGT----AAAT-AAATTG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
**
3231191 A-CTTA
66 ATCAGA
* * * * * ** * *
3231196 GATTAAATCACAAGTCAAAATATGAAAACGATCAAGATTAAGCCAT-ATGTAAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGA-GTCAGAAAATGAAAAT
3231260 GATC-GA
65 GATCAGA
* * * ** * * *
3231266 GATTAAATCATGAGTCAAAAACTAAAAATGATTG-GTATTAAATCACAAGCCAAAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGA-AAATGAAAA
*
3231330 TGATTA-A
64 TGATCAGA
* * ** * * * * *
3231337 AATTGAATCATAAGTCAAAATATGAAAATGATCGAGATTAAACCATGAGTTAGAAAACAAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAG------AAAATG
* *
3231402 ATAATGAAAATTACCATA
60 AAAATG---A-T--CAGA
* * * * * * * * *
3231420 -ATTAAATTACTAGT-AAGAAAATGAGAATGATCGGGGTCAAAACATGAGAT-AGAAAAAGAAAA
1 GATTAAATCACGAGTCAA-AAAATAAAAATGATCGAGATTAAATCATGAG-TCAGAAAATGAAAA
* * *
3231482 CGAT-TGG
64 TGATCAGA
* * * * * * ** * * ** * *
3231489 GACTAAA-CCCTAAGTGAGAAAATGAAAACCA-CTAGGATTAAACCACCAGTCAAAAAATGAAAG
1 GATTAAATCAC-GAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
* *
3231552 CGATC-GG
64 TGATCAGA
* * * * * * * *
3231559 GATTCAATGATGAGCCAAAAAATGAAAAATGATCGAGATTATACCATGAGTCAAAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3231624 GATTAG-
65 GATCAGA
* * * * *
3231630 GATTAAATCATGAGTCAAAAAATAAAAATGATTGGGATTAAA-CAACGGGTC-GAAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAG-AAAATGAAAA
** * *
3231693 CAAT-TGG
64 TGATCAGA
* * * *
3231700 GATTAAATCATGAGTCAAAAAATAAAAATGAT-GAG--TCAA--A-GAAT--GAAAATGACCAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGA-AAAT
*
3231757 -ATTA-A
65 GATCAGA
* * * * *
3231762 -ATTAGGAGT--C-A---AAGAAATAAAAATGAATAGA-ATCAAATCACGAGTCAGAAAATGAAA
1 GATTA--AATCACGAGTCAAAAAATAAAAATG-ATCGAGATTAAATCATGAGTCAGAAAATGAAA
*
3231819 ATTA-CTAG-
63 ATGATC-AGA
* * * * ** *
3231827 GATTAAACCACTAGTCAAGAAATGAAAATGA-CTGA-ATTTAAATCACAAGTCAGAAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGA-TTAAATCATGAGTCAGAAAATGAAAA
* *
3231890 TGA-AAAA
64 TGATCAGA
* * * * * * * * * *
3231897 AATGAAATCACAAGTCTAAAACTAAAAATGA-CTGGGATTAAA-CTAAGAGTAAAAAAATTAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATC-ATGAGTCAGAAAATGAAAA
* *
3231960 AGAT-AGG
64 TGATCAGA
* * * * * * * * ** *
3231967 GATTAAACCACGAGTCAAAGAATGAAAACG-CCTAAGATGAAACCACCAGTTAGAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATG-AAAA
3232031 TGATC-GA
64 TGATCAGA
* * * * * * *
3232038 GATTAAACCACGAGTCAAAAAATTAAGAT-AACAGGGATTAAACCATGAGTCAGAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGA-AAATGAAAA
*
3232102 TGACCA-A
64 TGATCAGA
* * * * * * * *
3232109 AATTAAATCACGAGTCAGAAAATTAAAACGAT-AAGAATTAAACCGTGAGTCAGCAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
*
3232173 AATCAG-
65 GATCAGA
* * * * * * * * * *
3232179 GATTAAATCTCTAGTCAGAAAATAAAAA-CAACCAGGATTAAACCATGACTCAAAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
3232243 GACTC-G-
65 GA-TCAGA
* *
3232249 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAACCATGGGTCAGAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3232314 A-CCGA
66 ATCAGA
* * * * * * * * *
3232319 GATTAAACCATGGGTTAGAAAATGAAAACGA-CTGAGATTAAATCATGAGTGAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3232383 GAT-TG-
65 GATCAGA
* * * * * *
3232388 GTATTAAATCA-GAAGCCAGAGAAATAAAAATGATCAAAATTAAATCACGAGTCAAAAAATGAAA
1 G-ATTAAATCACG-AGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAA
*
3232452 ATAATCA-A
63 ATGATCAGA
* * * *
3232460 GATTAAATCACGAGTCAAAAAATGAAAATGA-C-A-ATTAAA--ATTA-TC--AAAATTACATTA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGA-A-AA
3232517 TGAGTCAGA
64 TGA-TCAGA
* * * * **** * ** * * * *
3232526 AAATAAA-AATGA-T--TGGGATTAAAATGA--GAG-TTAAAAAATGAAAATGATCAAAATTAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATG--AGTCA-GAAAATGAAA
3232584 GCATGAGTCAGAA
63 --ATGA-TCAG-A
* * * * * * * * * * * * *
3232597 AATGAAAACGATTGGGACCAAACCTTGAGTGAGAAAATGAAAACCACCAGGATTAAACCGTAAGT
1 GATTAAATC-A-CGAG-TCAAA----AAAT-A-AAAATG---A--TCGA-GATTAAATCATGAGT
* ** *
3232662 CAAAAAATGAAAGCGATTAG-
51 CAGAAAATGAAAATGATCAGA
* * * * *
3232682 GATTAAA-CAACGAGTC-AAAAATGAAAAATGATCGGGACTATACCACGAGTCA-ATAAATGAAA
1 GATTAAATC-ACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGA-AAATGAAA
*
3232744 ATGATC-GG
63 ATGATCAGA
* * *
3232752 GATTAAATCATGAGTCAAAAAATAAAAATGATAGGGATTAAA-CAATGCA-TC-GAAAAATGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATG-AGTCAG-AAAATGAAA
* *
3232814 ACGAT-AGG
63 ATGATCAGA
* * * * * * ** * * * * *
3232822 GATTAGAGCACAAGTTAGAAAATGTAAAACAATGGGGATTAAACCATAAGTCA-AAAAGGAAAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAAA
*
3232886 TGA-CCGA
64 TGATCAGA
* * * * * * * * *
3232893 GATTAAACCATGAGTCAAAAAATGAAAACGATCAAAATTAAATGACGAGTCAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3232958 A-CCG-
66 ATCAGA
* * * * * *
3232962 GCATTAAATCACAACTCAAAGAAATAAAAATGATCGAAATCAAATCACGAGCCAGAAAATGAAAA
1 G-ATTAAATCACGAGTCAAA-AAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
3233027 TGATC-GA
64 TGATCAGA
* * * ** * * * ** *
3233034 GATTAAACCACTAGTCAAGAAACGAAAATGACCAAAATTAAATCACAAGTTAGAAAAT-AAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3233098 ATC-GA
66 ATCAGA
* ** * * * * *
3233103 -AGTTAAATCA-GAAGTCTAAAACCAAAAACGATC-AGAATTAAACCACGAGTTAGAAAATTAAA
1 GA-TTAAATCACG-AGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAA
*
3233165 ATG-GCATG-
63 ATGATCA-GA
* * * * * * *
3233173 GATTAAACCACAAGTCAAAGAATGAAAATGACCAAGATGAAA-C-TAGCAGTCAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCAT-G-AGTCAGAAAATG-AAA
* * *
3233236 ACGAT-TGG
63 ATGATCAGA
* * * * * * * * * * * * *
3233244 GATTAAACCATGAGTTAGAAAATGAAGA-CAACGGGGATTGAACCACGAGTCA-AAGAAAGAAGA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAA-AATGAA-A
3233307 ATGA-CTAGA
63 ATGATC-AGA
* * * * * * * * ** **
3233316 -ATTGAATCGCGAGTTAGAAAATGAAAATGATGGAAATTAAACCACAAGTCAGAAAATGAAAACA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3233380 ATCAG-
66 ATCAGA
* * * * * * *
3233385 GATTAAATCATGAGTCAAAAAATAAAAAAAGACCGAGATTAAACCA-CA---AGTAAAT-AAATT
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
3233445 GACTCA-A
65 GA-TCAGA
* * * * *
3233452 -ATTAAATCACGAGTTAAAAAATGAAAACGATCGAGATTAAATTATGAGTCA-AAAACTAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAA-TGAAAAT
3233515 GATC-G-
65 GATCAGA
* * * * * *
3233520 GTATTAAATCACAAGCCAGAGAAATAAAAATGGTCGAAATTAAATCATAAGTCA-AAATATGAAA
1 G-ATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAA-ATGAAA
3233584 ATGATC-GA
63 ATGATCAGA
* * * * * * * *
3233592 GATTAAACCATGAGTTAGAAAACCAAAATGACAATGAAAATTACCAAAATTAAATTACT-AGTAA
1 GATTAAATCACGAGTCA-AAAA--ATAA--A-AATG---A-T--CGAGATTAAATCA-TGAGTCA
* *
3233656 GAAAATGAGAATGATC-GG
53 GAAAATGAAAATGATCAGA
* * * * *** * * * * * * *
3233674 GGTCAAAACATGAGTTGGAAAATGAAAACGATC-AGGACTAAACCCTGAGTGAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
* *
3233738 CACCAG-
65 GATCAGA
* * * * * * *
3233744 GATTAAACCATGAGTCAAAAAATGAAAGTGATCGAGATTCAATTATGAGCCAGAAAATGAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAAAT
* *
3233809 GAT-TGG
65 GATCAGA
* * * * * * * * *
3233815 GATTATACCATGAATCAAAAAATAAAAAGGATC-AGGATTAAATTACGAGTCAAAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
*
3233879 GATAAG-
65 GATCAGA
* * * * * *
3233885 GATTAAATAACGGGTCAAAAAATGAAAACGA-CTAGGATTAAATCATGAGTCCA-AAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGT-CAGAAAATGAAAA
*
3233948 TGAT-AGG
64 TGATCAGA
* * * * * * * *
3233955 GATGAAA-CAATGCA-TCAAAAAATGAAAATGATAGGGATTAAAGCATGAGTTAAAAAATGTAAA
1 GATTAAATC-ACG-AGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAA
** *
3234018 ACAAT-AGG
63 ATGATCAGA
* * ** * * * * *
3234026 GATCAAACCATAAGTCAAAAAGTGAAAATGATCAAGATTAAACCAGGAGTCAGAAAATGAAAAT-
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
* *
3234090 AACCGA
66 ATCAGA
* * * * * * * *
3234096 AATTAAA-CGATGAGTCAAAAAATGAAAATGACCAACATTAAATCAGGAGTCAAAGAAAA-AAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTC--AGAAAATGAAA
*
3234159 ATGATTAGA
63 ATGATCAGA
* * * * * *
3234168 -ATCAAATCATGAGTCAGAAAATGAAAATGA-CTAGGATTAAACCACT-AGTCA-AGAAATGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCA-TGAGTCAGA-AAATGAAA
*
3234229 ATGAT-TGA
63 ATGATCAGA
* * * * * ** * *
3234237 -ATTTAAATCACAATTC-AGAAA-AAAAATGA-CAAAAATTAAATCACAAGTCTA-AAACTAAAA
1 GA-TTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTC-AGAAAATGAAA
*
3234297 ATGAT-TG-
63 ATGATCAGA
* * * * * * *
3234304 GATTAAA-CTAAGAGTTAAAAAATTAAAACGA-CAGGGATTAAACCACGAGTCA-AAGAATGAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAA-AATGAAA
*
3234366 ATGA-CTGA
63 ATGATCAGA
* * * * * * * * * * * *
3234374 GATGAAACCACCAGTTAGAAAATGAAAAATGATTGGGATTAAACCACGAGTTAGAAAATTAAGA-
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* *
3234438 CAAC-GA
65 GATCAGA
** * * * * * *
3234444 GGATTAAGCCATGAGTCAGAGAAATAAAAATGA-CCAGAATTAAATCACGAGTCAAAAAATTAAA
1 -GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAA
*
3234508 ATGATAAGA
63 ATGATCAGA
** ** * * *
3234517 -ATTAAATCGTGAGTCAGCAAATGAAAATGATC-AGGATTAAATCTTGAGTCAGAAAAT-AAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
* *
3234579 CAACTAG-
65 GATC-AGA
* * * * * ** * *
3234586 GATTAAACCATGACTCAAAAAATAAAAACGA-CTTAGATTAAATCACAAGTCAAAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAAT
3234650 GATC-GA
65 GATCAGA
* * * * * * * * * *
3234656 GATTAAACCATGGGTTAGAAAATGAAAACGATTGAGATTAAATCATGAGTGAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3234721 AAC-G-
66 ATCAGA
* * * * *
3234725 GTATTAAATCACAAGCCAGAGAAATAAAAATGATCAAAATTAAATCATGAGTCAGAAAATGAAAA
1 G-ATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAA
*
3234790 ATGATC-GG
63 ATGATCAGA
* * * * * * *
3234798 GATTATACCACGAGTCAATAAATGAAAATGATCGGGATTAAATCATGAGTCAAAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
* *
3234863 AT-TGG
66 ATCAGA
* ** * * * * ** *
3234868 GATT-AAGCAACGCA-TTGAAAAATGAAAATGATAGGGATTAAAGCACAAGTTAGAAAATGTAAA
1 GATTAAATC-ACG-AGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAA
** * *
3234931 ACAAT-GGG
63 ATGATCAGA
* ** *** * * * *
3234939 GATTAAACCATAAGTCAAAAAGGGAAAATGACCAAGATTAAACCATGAGTCAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3235004 A-CCG-
66 ATCAGA
* * * * * * *
3235008 GCATTAAATCATGAGTCAAAGAGATAAAAA-GATCGAAATCAAATCACGAGCCAAAAAATGAAAA
1 G-ATTAAATCACGAGTCAAA-AAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
3235072 TGATC-GA
64 TGATCAGA
* * * * * * * ** *
3235079 GATTAAACCACTAGTCAAGAAATGAAAATGACCAAAATTAAATCACAAGTTAGAAAAT-AAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3235143 ATC-GA
66 ATCAGA
** ** * * * * * * *
3235148 -AGTTAAATCA-GAAGTGTAAAACCAAAAA-CAACCAGAATTAAAACCACGAGTTAGAAAATTAA
1 GA-TTAAATCACG-AGTCAAAAAATAAAAATGATCGAG-ATT-AAATCATGAGTCAGAAAATGAA
* *
3235210 AACG-GCATG-
62 AATGATCA-GA
* * * * * * * *
3235219 GATTAAACCACGAGTTAAAGAATGAAAATGACCAAGATGAAACCA-GAAGTCAGAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATG-AGTCAGAAAATG-AAAA
* * *
3235283 CGAT-TGG
64 TGATCAGA
* * * * * ** * * * * * * *
3235290 GATTAAACCATGAGTTAGAAAATAAAGACAATGGGGGTTGAACCATAAGTCA-AAGAAAGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAA-AATG-AAAA
3235354 TGAAT-AGA
64 TG-ATCAGA
* * * * * * * * *
3235362 G-TTAAATTACAAGTTAGAAAATGAAAATGATGGAAATTAAACCATGAGTCAGAAAATGAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3235426 ATTAG-
66 ATCAGA
* * * * * ** * * *
3235431 GATTAAATCATGAGTCAAAAAATAAAAAAGACCCCACGAGTAAAAAATTTGACTAAGATTAAATC
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGA-GATTAAATCA--TGAGTCAGA--AAATG
** *
3235496 ACGA-G-TCAAAA
60 AAAATGATC-AGA
* * * * ** *
3235507 AATGAAAACAATCGAGATTAAGCCATATGTCAAAAAATGAAAACAATTGAGATTAAATCATGAGT
1 GATTAAATC-A-CGAG--T----C--A----AAAA-ATAAAAATGATCGAGATTAAATCATGAGT
* *
3235572 CAAAAAATGAAAACGATC-GA
51 CAGAAAATGAAAATGATCAGA
* * * * * ** *
3235592 GATTAAACCATGAGTCAAAAAATAAAAACGATAATGAAAATTACTAAAATTAAATTACTAGTAAG
1 GATTAAATCACGAGTCAAAAAAT---AA--A-AATG---A-T-C-GAGATTAAATCATGAGTCAG
* *
3235657 AAAATGAGAATGA-CCGA
54 AAAATGAAAATGATCAGA
* * * * * * * * * * * * * *
3235674 GGTCAAAACACGAGTTAGAAAATGAAAACGA-CTGGGAGTAAACCCTGAATGAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAAT
* *
3235738 CACCAG-
65 GATCAGA
* * * ** * * * *
3235744 GATTAAACCACAAGTCAAAAAATGAAAGCGATCGAGTTTCAA-CGATAAGTCAGAAAAAGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATG-AAAA
* *
3235808 CGATC-GG
64 TGATCAGA
* * * * * * * *
3235815 GATTATACCACAAGTCAAAAAATGAAAACGATCAAGATTAAATCATGAGTCAAAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3235880 AT-AGG
66 ATCAGA
* * * * * * * * * *
3235885 GATTAAA-CAATGGGAT-GAAAAATGAAAACGATAGGGATTAGAGCATGAGTTAGAAAATGTAAA
1 GATTAAATC-ACGAG-TCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAA
* ** *
3235948 A-CAAAAGG
63 ATGATCAGA
* * * * * * * **
3235956 GATTAAACCACAAGTCAAAAAGTGAAAATGATTGAGATTAAACCATGAGTCAAAAAATGAAAACA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3236021 ACCAGA
66 ATCAGA
* * * * *
3236027 -ATTAAA-CGACAAGTCAAAAAATGAAAATGATC-AGCATTAAATCACGAGTCAAAGAAATAAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGA-AAATGAAA
*
3236089 ATGACCA-A
63 ATGATCAGA
* * * * * * * *
3236097 AATCAAATCACAAATCAGAAAATGAAAATGATCGAGATTAAACCACT-AGTCA-AGGAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCA-TGAGTCAGA-AAATGAAAA
**
3236160 CAATCA-A
64 TGATCAGA
* * * *
3236167 AATTAAATCACGAGTCAGAAAATAAAAATGATCGAAATTAAATCATGAGT--GTAAAACTAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAG-AAAA-TGAAAA
*
3236230 TGACCA-A
64 TGATCAGA
* * * * * * * * * *
3236237 GATTAAACCACGAGTCAGAAAATTAAAACTGATAGGGATTAAACCACGGGTCAGAGAATGAAAAA
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3236302 GACCA-A
65 GATCAGA
* * * ** * * * * *
3236308 GATGAAACCACCAGTCAAAAAATAAAAAATGATTAAGATTAAACCATGAGTTAAAAAATGAAGAC
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* * *
3236373 AAT-GGG
65 GATCAGA
* * * * *
3236379 GATTAAA-CTATGAGTTAGAGAAATAAAAATGA-CCAGAATTAAATCACGAGTCAGAAAATGAAA
1 GATTAAATC-ACGAGTCA-AAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAA
**
3236442 ATGATGGGA
63 ATGATCAGA
* * * * * * ** * *
3236451 -ATTAAACCATGAGTTAGAATATGAAAATGA-CTGAGATTAAATCACAAGTCAAAAAATAAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAAT-GAAAA
*
3236514 TGACCA-A
64 TGATCAGA
* * * * * *
3236521 GATTAAACCACAAGTCAGAAAATAAAAATGACTCGA-ATTAAATTATGAGTCAAAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* *
3236585 GA-CCGG
65 GATCAGA
* * * * * * * * * * *
3236591 GATTAAACCATG-GATTAGAAAATGAAAA-CAACTGACATTAAACCATGAGTTAGAAAATGAAAG
1 GATTAAATCACGAG-TCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAA
* *
3236654 CGATC-GG
64 TGATCAGA
* * * * * * * ** *
3236661 GATTAAATGATGAGTCAAAAAATGAAAACGATAGGGATTAAAGCACAAGTCAAAAAAATGTAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAATG-AAAA
* *
3236726 -CAAC-GA
64 TGATCAGA
** * * *
3236732 GAATTAAATCATAAGTCAAAAAGTGAAAATGA-CAGAGATTAAACCATGAGTCA-AAAATTGAAA
1 G-ATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAA-TGAAA
** *
3236795 ACAACCAGA
63 ATGATCAGA
* * * * * *
3236804 -ATTAAATGATGAGTCAAAAAATGAAAATGA-CTAGTATTAAATCATGAGTCAAAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGA-AAATGAAAA
* *
3236867 TGACCGGA
64 TGATCAGA
* * * * * * * ** **
3236875 G-TCAAATCATGAGTCAGAAAATCAAAATGATTGGGATTAAACCACT-AGTC-GAGGATGAAAGC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCA-TGAGTCAGAAAATGAAAAT
3236937 GAT-AG-
65 GATCAGA
* * * * * * *
3236942 GAATTAAATCACGAGTCAGAAAATAAGAATGACCGAAATTAAATCACGAGTCTA-AAACTAAAAA
1 G-ATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAATGAAAA
*
3237006 TGACCAG-
64 TGATCAGA
* * * * * * * * ** *
3237013 GATTAAACCACGAGTTAAAAAATTAAAATGGTAGGGATTAAACCACGAGTTTGATAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3237078 ATC-GA
66 ATCAGA
* * ** * * ** * * * * **
3237083 GATGAAACCACCTGTTAGAAAATGAAAAACAATCAAGATTAAACCATAAGTCAGAAAAAGAGGA-
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* * * *
3237147 CAACGGG
65 GATCAGA
* * * * * * * ** *
3237154 GATTAAATTGA-GAGTCAAAAAACAAAAATGACCAAAATTAAATCTTGAGTCAAAAAATGTGAAC
1 GATTAAA-TCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
**
3237218 GATGTGA
65 GATCAGA
* ** * * * * ** * * * * *
3237225 -ATTAAAACAAAAATGATAAGAAT-TAAATGA-CGAGTCAAAAAAT-AAGAATGATCAAAAT-TA
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAG--ATTAAATCATGAGTCA-GAAAATGAA
*
3237285 AAT--TAAGA
62 AATGATCAGA
* ** * * ** * * * * **
3237293 G-TCTAAAATAGAAAATGACCAGGATTAAATCATGAGTCAGAAAATTAAA--ACGA-T-AG-GGA
1 GAT-T-AAAT-CACGA-GTCAAAAAATAAA-AATGA-TC-G-AGATTAAATCATGAGTCAGAAAA
*
3237352 TTAAACCATGAGTCAGA
58 TGAAA--ATGA-TCAGA
* * * *
3237369 GAATGAAAACTACCGAGATGAAACCACCAATCAAAAAATGAAAAATGATCAAGATTAAATCATAA
1 G-ATTAAATC-A-CGAG-T--------C-A--AAAA-AT-AAAAATGATCGAGATTAAATCATGA
* * * *
3237434 GTTAAAAAATAAAAATGATC-GG
49 GTCAGAAAATGAAAATGATCAGA
** * * * ** * * * * *
3237456 GATTAAGCCATGGGTCAAAAAATGAAAACAACCGAGATTCAACCATGGGTTAGAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3237521 ATCA-A
66 ATCAGA
* * * * **
3237526 GATTAAATCATGAGTTAGAAAATGAAAATGATCG-GTATTAAATCACAAG-CTAGAGAAATGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTC-AGA-AAATGAAA
* *
3237589 GTTATCA-A
63 ATGATCAGA
* * * * * *
3237597 AATTAAATCACAAGTTC-GAAAATGAAAATGATCGAGATAAAACCATGAGTCAGAAAATAAAAAC
1 GATTAAATCACGAG-TCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAAT------
* * *
3237661 GATAATGAAAACTACCA
59 GAAAATG--ATC-A-GA
* * * * * * * * *
3237678 TAATTAAATTACAAGTCAAAAAATGAAAATGATTGGGATTGGAA-CGTGAGTTAGAAAATGAAAA
1 -GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATT-AAATCATGAGTCAGAAAATGAAAA
3237742 TGATC-GA
64 TGATCAGA
* * * * * ** * * * * * * **
3237749 AATTAAAGCATGAGTCAGAAAATGAAAACAATTGGGACTAAACCCTGAGTGAGAAAATGAAAACC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3237814 ATTAG-
66 ATCAGA
* * * ** * * *
3237819 GATTAAA-CTACGAATCAGAAAATGAAAGCGATC-AGGATTAAGCAACA--AGTCTGAAAATAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGA-GATTAA--ATCATGAGTCAGAAAATGAA
* *
3237880 AAAGATC-GG
62 AATGATCAGA
* * * * * * * * ** * *
3237889 GATTATACCATGAGTCAAAAAATGAAAACGACCGGGAATAAATCACAAGTCAAAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3237954 A-CAGG
66 ATCAGA
* * * * *** * *
3237959 GATTAAA-CAATGCA-TCGAAAAATGAAAACGAGATAAATTAAAGCATGAGTCAGAAAATGTAAA
1 GATTAAATC-ACG-AGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAA
* * *
3238022 A-CAACAGG
63 ATGATCAGA
* * * * * * * *
3238030 GATTAAACCACAAGTCAAAAAGTGAAAATGACCAAGA-TAAACCATGAGTCAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3238094 ACCA-A
66 ATCAGA
* * * * * * * *
3238099 -ATTTAAATAACAAGTCAAAAAATGAAAATGACCG-GCATTAAATCACGATTCAAGGAAATAAAA
1 GA-TTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTC-AGAAAATGAAA
*
3238162 ATGA-CCGA
63 ATGATCAGA
* * * * * **
3238170 AATCAAATCACTAGTCAAAAAATGAAAATGATC-AGGATTAAACCACT-AGTCA-AGAAATGAGC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCA-TGAGTCAGA-AAATGAAA
*
3238232 ACGA-CTAGA
63 ATGATC-AGA
* * * * * * *
3238241 -ATTAAATCACGAGTTAGAAAATACAAATG-GCTGAAATTAAATCATGAGTCTA-AAACTAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTC-AGAAAATGAAAA
*
3238303 TGATC-GG
64 TGATCAGA
* * ** * * * * * * *
3238310 GTTTAAACCATAAGTCAAAAAATTAAAACGATAGGGATTAAACCATGAGTTAGAGAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3238375 ATC-GA
66 ATCAGA
* * * * * * * * * *
3238380 CATGAAACCACCAGTTAGAAAATGAAAAATGATCAAGATTAAATCATGAGTCATAAAATGAAGAC
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* *
3238445 AATGA-A
65 GATCAGA
* * * * ** *
3238451 GATTAAACCATGAGTCAGAGAAATAAAAATGA-CTAGAATTAAATCACAAGTCAGAAAATGAAAG
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
* **
3238515 CGATGGGA
64 TGATCAGA
* * * * * * * *
3238523 -ATTAAACCACGAGTCAAAAAATGAAAATGATTGGGATTAAATCACGACTTAGAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
* *
3238587 AT-TGG
66 ATCAGA
** * * * * * *
3238592 GATTAAGCCATGAGTCAAAAAATAAAAATGAACCAGATTAAATCAAGAGCCAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3238657 A-CAGG
66 ATCAGA
* * * * * ** * * * *
3238662 GATTAAACCATGGGTCAGAAAATGAAAACAATCAAGATTAAACCATG-GATTAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAG-TCAGAAAATGAAAAT
*
3238726 GA-CTGA
65 GATCAGA
* * * * *
3238732 GATTAAATCATGAGTCAAAAAATGAAAATGATCGAGACTAAACCATGAGTTAGAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3238797 ATAATGAAAATTA
66 ATCA-G------A
* * * * * *
3238810 TTGAATTTAAATTATGAGTCAAAAAATGAAAATGATCGAGATCAAA--ATGCGAGTTAAAAAATG
1 --G-A-TTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCAT--GAGTCAGAAAATG
*
3238873 AAAATGA-CTG-
60 AAAATGATCAGA
* ** * * * * * *
3238883 GAATTAAAAGCACGAGTCCGAAAATGAAAATGA-CTGGGA-TAAAACCTTAGTGAGAAAATGAAA
1 G-ATT-AAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAA
3238946 GA-GATCA-A
63 -ATGATCAGA
* * * * *
3238954 GATTAAA-CAACGAGTCAGAAAATGAAAAATGA-CTGGGATTATACCATGAGTCAAAAAATGAAA
1 GATTAAATC-ACGAGTCAAAAAAT-AAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAA
* *
3239017 ACGA-CCGA
63 ATGATCAGA
* * * * * *
3239025 GAATAAAGCATGAGTCAAAAAATAAAAATGA-CAGGGATTAAA-CAACGTGTCAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATC-ATGAGTCAGAAAATGAAAA
*
3239088 TGAT-AGG
64 TGATCAGA
* * * * * * * * * * * *
3239095 GATTAGAGCATGAATTAGAAAATGTAAAA-CAACGGGGATTAAATCGTAAGT-A-AAAAGTGAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATC-GAGATTAAATCATGAGTCAGAAAA-TGAAA
3239157 ATGATC-GA
63 ATGATCAGA
* * * * * * * ** * *
3239165 GATTAAACCATGAGTCAGAAATTGAAAATGATCGAAATTAAATGACAAGTTAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3239230 A-CTAG-
66 ATC-AGA
* * * * *
3239235 CATTAAATCATGAGTTAAGGAAATAAAAATGATCG-GAATCAAATCATGAGTCAGAAAATGAAAA
1 GATTAAATCACGAGTCAA-AAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
*
3239299 TTA-CTAG-
64 TGATC-AGA
* * * * * * * *
3239306 GATTAAACCACTAGTCAAGAAATGAAAATGATTGAAATTAAATCATGAGTTAGAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3239371 ATC-GA
66 ATCAGA
* * * * * * * ** * * *
3239376 AATTAAATCACGAGTCTAAAACTGAAAATGATTGGGATTAAACCACAAGTCAAAAAATTAAAA-C
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
* *
3239440 AACAGG
66 ATCAGA
* * * * * * * ** * ** * ** * *
3239446 GATTATACCATGAGTTAGAGAATGAAAACAATTGAGAGGAAACCACCAGTCAAAAAATGAAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAAAT
3239511 GATCAG-
65 GATCAGA
* * * * ** * * * * * *
3239517 GATTAAACCACGAGTCAGAAAATGAAGACAATGGGGACTAAACCATGAGTTAGAGAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGA-AAATGAAAAT
*
3239582 GAACAGA
65 GATCAGA
* * * * * *
3239589 -ATTAAATCACGAGTCAGAAAATGAAAATGAT-GGGAATTAAATCACGAGTTAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
3239652 GATCAG-
65 GATCAGA
* * * * *
3239658 GATTAAATCACAAGTTAGAAAATAAAAATGATCGAGATTAAA-CTACGAGTCAGAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATGAAAAT
*
3239722 GACCCA-A
65 GA-TCAGA
* * * * * *
3239729 -ATTAAATCATGTGTCAAAAAATGAAAATGA-CTGAGATTAAACCAT-AGGTCAGAAACTGAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGA-GTCAGAAAATGAAAA
*
3239791 CGA-CA-A
64 TGATCAGA
* * * * * * * *
3239797 GGATTAAATTATGGGTTAGAAAATGAAAATGA-CGGAGATTAAATCATGAGTTAAAAAATGAAAA
1 -GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAA
3239861 TGATC-G-
64 TGATCAGA
* * * * * *
3239867 GTATTAAATCACAAGCCAAAGAAATAAAAATGATTGAAATTAGATCATAAGTCAGAAAATGAAAA
1 G-ATTAAATCACGAGTCAAA-AAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
**
3239932 CAATC-GA
64 TGATCAGA
* * * * * * * * *
3239939 GATTAAACCATGAGTCAGAAAATGAAAACGAT--A-ATGAAAATTACTGAAATTA-AACTGCAAG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGAT-TAAATCA-TG-AGTCAGAA----AA-
* **
3240000 TCAGAAATGAAAATGA
58 TGA-AAATGATCA-GA
***** * * * * * * * *
3240016 CCCGGAATAAAACATGAGTTAACAAATAAAAATGA-CGGGAATTAAAGCACGAGTTAGAAAATGA
1 GATTAAAT-CAC---GAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGA
* *
3240080 AAACGA-CCG-
61 AAATGATCAGA
* * * * * * ** * * *
3240089 GGTCTAAA-CCCTGAATGAGAAAATGAAAACCA-CTATGATTAAACCATGAGTCAAAAAAT-AAA
1 GAT-TAAATCAC-GAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAA
* *
3240151 AGTCATC-GG
63 A-TGATCAGA
* * * * * * *
3240160 GATTAAA-CGATGAGTCAAAAAATGAAAAA-CAACTGGGATTATACCATGAGTCAAAAAATGAAA
1 GATTAAATC-ACGAGTCAAAAAAT-AAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAA
** *
3240223 ACAACCAG-
63 ATGATCAGA
* * * * * ** *
3240231 GATTAAATCATGAGTCAAAATATAAAAATTATAGGGATTAAA-CAACATGTCTA-AAAAAGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGA-GTC-AGAAAATGAAAA
* *
3240294 TG-CCAGG
64 TGATCAGA
* * ** * * *
3240301 GATTAAAGCACAAGTCAAAAAATATAAAACAATAGGGATTAAACCATGAGTCA-AAAAGTGAAAA
1 GATTAAATCACGAGTCAAAAAATA-AAAATGATCGAGATTAAATCATGAGTCAGAAAA-TGAAAA
3240365 TGATCA-A
64 TGATCAGA
* * * * * * * * * *
3240372 GATTAAACCACGAGTCAAAAAATGAAAAT-ACCAAAATTGAATGATAAGTTAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3240436 A-CTG-
66 ATCAGA
* * *
3240440 GCATTAAATCATGAGTCAAAGAAATAAAAATGATTG-GAATCAAATCATGAGTCAGAAAATGAAA
1 G-ATTAAATCACGAGTCAAA-AAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAA
3240504 ATGA-CTAG-
63 ATGATC-AGA
* * * * ** * *
3240512 GATTAAACCACTAGTCAAGAAACT-AAAATGA-CCAGAATTAAATCACAAGTTAGAAAATAAAAA
1 GATTAAATCACGAGTCAA-AAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
*
3240575 TGACCA-A
64 TGATCAGA
* * * * * * * * * *
3240582 AATTAAATCATGAGTCTAAAACTGAAAA-CAACCAGGATTAAACTACA--AGTCAAAAAATTAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAA-T-CATGAGTCAGAAAATGAAA
* * *
3240644 ACGAT-GGG
63 ATGATCAGA
* * * * * * * * * **** *
3240652 GATTAAACCATGAGTCAGAGAATGAAAATGACCAAGATGAAACCACCTTTCAAAAAATGAAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAAA-
*
3240717 T-ATC-GG
64 TGATCAGA
* * * * * * * * * *
3240723 GATTAAACCACAAGTCAAAAAAT--GAAGGCAACGGGGATTAAACCACGAGTCGGAGAAATAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATG-ATC-GAGATTAAATCATGAGTCAGA-AAATGAAA
*
3240786 ATGACCAGA
63 ATGATCAGA
* * * * * *
3240795 -ATTAAATCACAAGTCAAAAAATGAAAATGATAG-GAATTAAACCACGAGTCAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
*
3240858 GA-CCGA
65 GATCAGA
* * * * *
3240864 GATTAAATCACGAGCCAGAAAATAAAAATGAAT-GGGATT-AATCCACGAGTCAAAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATG-ATCGAGATTAAAT-CATGAGTCAGAAAATGAAAA
* *
3240927 -CAACTAG-
64 TGATC-AGA
* * * * * * * *
3240934 GATTAAACCATGGGTTAGAAAATGAAAATGACCGAGATTAAATCATGAGTTAGAAAATGAAAACT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA-T
3240999 -ATCAG-
65 GATCAGA
* * * * * * ** * *
3241004 TATTAAATCACAAGCCAGAGAAATAAAAATGATCAAAATTAAATCACAAGTCAAAAAATAAAAAT
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3241069 TATCA-A
65 GATCAGA
* * * ** * * *
3241075 GATTAAACCACAAGTCAGAAAACAAAAATGATAATGAAACTTATTAGAATTAAATTACGAGTTAG
1 GATTAAATCACGAGTC--AAAA-AATAA--A-AATG--A--T-CGAG-ATTAAATCATGAGTCAG
*
3241140 AAAATGAAAATGACCA-A
54 AAAATGAAAATGATCAGA
* * * * * * * * * *
3241157 AATTAAAGCTCAAGTCAGAAAATTAAAAATGA-CTGGGACTAAACCTTGAGTGAGAAAATGAAAA
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAA
** *
3241221 CCACCAG-
64 TGATCAGA
* * ** * *
3241228 GATTAAACCACGAGTCAAAAAATTAAAGCGAT-TAGGATTAAACCATGAGTCAG-AAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATG-AAAA
* * *
3241291 CGA-CTGG
64 TGATCAGA
* * * * * *
3241298 GATTATACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAATCATGAGTCA-ACAAATTAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGA-AAA-TGAAA
3241361 ATGA-CAGA
63 ATGATCAGA
* * * * * * ** *
3241369 GATTAAA-CAATGCA-TCAAAAAATGAAAATCA-CAGGGATTAGAGCCCGAGTCAAAAAATGTAA
1 GATTAAATC-ACG-AGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATG-AA
**
3241431 AACCA-CA-A
62 AATGATCAGA
** * * * ** * * * *
3241439 GTAAAAAAGTGA-AAGTGATTGAGAT-TAAATCA-CGAG-TCATAAA--ATGAAT-ACGATCACA
1 G-ATTAAA-TCACGAGTCA-AAAAATAAAAATGATCGAGAT--TAAATCATGAGTCA-GA--A-A
* *
3241497 ATTAAATGATGAGTCACAA
57 ATGAAA--ATGA-TCA-GA
* * * ** * * * * * *
3241516 AATGAAAATGATCG-G-CATTAAAT---CATGAGTCAAAGAAATAAA-AAAGA-TC-G-AAATCA
1 GAT-TAAATCA-CGAGTCAAAAAATAAAAATGA-TC-GAG-ATTAAATCATGAGTCAGAAAATGA
* *
3241572 AATCTTGAGTTAGAA
61 AA--ATGA-TCAG-A
* * * * * **
3241587 AATGAAAATGA-GTAGGATTAAATCACTAGTCAAGAAATGAAAATTATAAGAATTAAATCATGAG
1 GAT-TAAATCACG-A-G-TCAAA--A--AAT-AA-AAATG---A-T-CGAG-ATTAAATCATGAG
* *
3241651 TTAGAAAATAAAAATGATC-GA
50 TCAGAAAATGAAAATGATCAGA
* * * * * * * ** * *
3241672 AATTAAATCATGAGTCTAAAACTAAAAATGACCAAGATTAAACCACCAGTTAGAAAATTAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3241737 AT-AGG
66 ATCAGA
* * * * * * * * * *
3241742 GATTAAACCACGAGT-AAGAAATGAAAATAATAGAGATGAAACCACT-TGTTAAAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCA-TGAGTCAGAAAATG-AAAA
* **
3241805 CGATTTG-
64 TGATCAGA
* * * * * * ** * * * *
3241812 GACTAAACCACGAGTTAGAAAATGAAGACAATAGGGATTAAA-CTATGAGTTAGAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGA-AAATGAAAA
3241876 TGA-CTAGA
64 TGATC-AGA
* * * * * ** * *
3241884 -ATTAAATCACGAGTCAGAAAATGAAAACGAT-GGGAATTAAACCACAAGTCAAAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
3241947 GATCAG-
65 GATCAGA
* * * * *
3241953 GATTAAATCACGAGTTAGAAAAA-AAAAA-GA-CCAGGATTAAACCATGAGTCAAAAAATAAAAA
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
**
3242015 TGATCTTA
64 TGATCAGA
* * ** * * ** * *
3242023 -ATTAAATCATGAGTCAAAAAATGAAAACAATTGATATTAAATCACAAGCCAGAGAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGA-AAATGAAAAT
3242087 GATCA-A
65 GATCAGA
* * * *
3242093 AATTAAATCACAAAGTCAAAAAATGAAAATGATCGAGATTAAACCATGAGTCAGAAAATGAAAAT
1 GATTAAATCAC-GAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG---A-
3242158 GAAATGAAAATTACTAGA
61 -AAATG---A-T-C-AGA
* * * * * * * * * *
3242176 -ATTAAATTATGAGTTAGAAAATGAAAATGATTGGGATCAAA--ATGGAAGTTAAAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCAT-G-AGTCAGAAAATGAAAA
*
3242238 CGATC-GA
64 TGATCAGA
* * * * * * * * **
3242245 -ATTAAAGCACGAGTCAGAAAATGAAAACGA-CTAGGAATAAACCCT-AAACAAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTC-AGAAAATGAAAA
** *
3242307 CCACCA-A
64 TGATCAGA
* * * * ** * * ** ** *
3242314 GATTAAACCACAAGTCAGAAAATGAAAGCGATAGGGAGGAAA-CGACAAGTCAAAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATG-AAAA
*
3242378 TGATC-GG
64 TGATCAGA
* * * *** * *
3242385 GACTACA-CTACGAGTCAAAAAA-AGAAAATGA-CCAGGATTAAATCGCAAGTCAAAAAATAAAA
1 GATTAAATC-ACGAGTCAAAAAATA-AAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAA
*
3242447 ATGA-CAGG
63 ATGATCAGA
* ** * * * * *
3242455 GATTAAA-CAATGCA-TCGGAATATGAAAATGA-CAGGGATTAAAGCATGAGTTAGAAAATGTAA
1 GATTAAATC-ACG-AGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATG-AA
* *
3242517 AA-CAACA-A
62 AATGATCAGA
* ** * * * *** *
3242525 GGATT-AACCATAAGTCAAAAAGTGAAAATGATCGAGATTAAACCGCAAGTTAGAAAATGAAAAT
1 -GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
3242589 GATC-GA
65 GATCAGA
* * * * * *
3242595 AATTAAA-CAATGAGTCAAAAAATGAAAATGA-CCAGCATTAAATCATGAGTCAAAGAAATAAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGA-AAATGAAA
**
3242658 ATGATTGGA
63 ATGATCAGA
* * * * * * **
3242667 -ATCAAATCACGAATCAAAAAATAAAAAATGACCGGGATTAAACCACT-AGTCAGGAAACAAAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCA-TGAGTCAGAAAATGAAAA
*
3242730 AGATCA-A
64 TGATCAGA
* * * * * * *
3242737 TATTAAATCATGAGTCAAAAAATAAAAATGACCAAAATTAAATCATGAGTCTA-AAACTAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAATGAAAAT
*
3242801 GACCAG-
65 GATCAGA
* * ** * * *
3242807 GATTAAACCATGAGTCAGGAAATTAAAATGA-C-AGGAATTAAACCATGAGTCAGAGAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-G-ATTAAATCATGAGTCAGAAAATGAAAA
3242870 TGA-CTA-A
64 TGATC-AGA
* * * * ** * *
3242877 GATGAAACCATC-AGTCAAAAAATAAAAAATGATCAAGATTAAACCACAAGTCAAAAAATGAAGA
1 GATTAAATCA-CGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
** * *
3242941 CAAT-GGG
64 TGATCAGA
* * * * * * * * * ** *
3242948 GATTAAACCACGA-TCGAGATTAAATCACAA-GTTAGAAAATGAAA--ATGATTGCTATTAAATT
1 GATTAAATCACGAGTC-A-A-AAAATAAAAATGATCG-AGATTAAATCATGAGT-C-AGAAAATG
* *
3243009 ACAA-G-CCAGA
60 AAAATGATCAGA
* * * * * * *
3243019 GAAATAAA-AATGA-TC--GAAAT-TAAATCA-CGAGTTTAAA--A--A-T-A-AAAATGATTGA
1 G-ATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGA---A
* * *
3243071 GATTAAACCACGA
62 -AAT-GATCA-GA
* * ** * * * * * * * * *
3243084 -CTCAAAAAATGA--AAAACGATAATGAAAATTATCGAAATTAAATTACGAGTCAAAAAATAAAA
1 GATTAAATCACGAGTCAAA--A-AATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAA
*
3243146 ATGATC-GG
63 ATGATCAGA
* * * * * * * *
3243154 GATTAAAACATGAGT---TAAA-AAAAAT--TAGA-ATTAAAGCACGAGTCAAAAAATGAAAGTG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
* *
3243212 A-CTGG
66 ATCAGA
* * * * * ** * ** *
3243217 GACTAAA-CCCTGAGTGAGAAAATGAAAACCACTC-AGATTAAACCACAAGTTAGAAAAT-AAAA
1 GATTAAATCAC-GAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTCAGAAAATGAAAA
* * *
3243279 GCGAT-TGG
64 -TGATCAGA
* * * * * * * *
3243287 GATTAAA-CGATGAGTCAAAAAATGAAAAATGA-CTAGGA-CATACCACGAGTCAAAAAAAGAAA
1 GATTAAATC-ACGAGTCAAAAAAT-AAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAA
* * *
3243349 ACGA-CTGG
63 ATGATCAGA
* * * * ** *
3243357 GATTAAATCATGATTCAAAAAATTAAAATGA-CAGGGATTAAA-CAACATGT-TGAAAAATGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGA-GTCAG-AAAATGAAA
*
3243419 ACGA-CAGA
63 ATGATCAGA
* * * * *
3243427 GATTAAAGCACGAGTCAAAAAATATAAAA-CAACGAGGATTAAACCATAAGTCA-AAAA-GAAAA
1 GATTAAATCACGAGTCAAAAAATA-AAAATGATCGA-GATTAAATCATGAGTCAGAAAATG--AA
3243489 AATGA-CTA-A
62 AATGATC-AGA
* * * * ** *
3243498 GATTAAACCACGAGTCAAAAAATAAAAATGACCAAGATTAAACCACAAGTTAG-AAA--AAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
* *
3243560 ACCCG-
66 ATCAGA
* * * * * * * * * *
3243565 GATTAAATCATGGGCCAGAAAAT-GAAACGACCTAGATTAAATCAT-AGGCCAAAAAATGAAAA-
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGA-GTCAGAAAATGAAAAT
* *
3243627 CAACTAG-
65 GATC-AGA
* * * * * * * *
3243634 GATTAAACCATGGGTTAGAAAATGAAAAGGACCGAGATTAAATCATGAGTCAGAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3243699 ATC-GA
66 ATCAGA
* * * * * ** *
3243704 TATTAAATCACAAGCCAGAGAAATAAAAATGATCGAAATTAAATCACAAGTCAGAAAATGAAAAC
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
3243769 GATCA-A
65 GATCAGA
* ** ** * *
3243775 GATTAAACCATAAGTCAGAAAATGATAATGATGAT-GAAGACTATCCAAATTAAATTACGAGCCA
1 GATTAAATCACGAGTCA-AAAA--ATAAAAATGATCG-AGA-T-T--AAA-T-CA-T--GAGTCA
* *
3243839 AAAAATTAAAATGA--ATGA
53 GAAAATGAAAATGATCA-GA
* * * * * * * * *
3243857 GATCAAAACACAAGTTAAAAAATGAAAATGATCGAAATTAAAGCATGTGTTAGAAAATGAAAATT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA-T
*
3243922 GCT-AG-
65 GATCAGA
* * * * * ** * * * * * *
3243927 G-GTAAA-CCCTGAGTGAGAAAATGAAAACCACCAAGATTAAA-CTATAAGTCAAAAAATTAAAG
1 GATTAAATCAC-GAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATGAAAA
* * *
3243989 CGAT-TGG
64 TGATCAGA
* * * * * * * *
3243996 GATTAAA-CAACAAGTCAAAAAATGAAAATGA-CCAGGATTCAAGCACGAGTCAAAAAATAAAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
* *
3244059 TTA-CAGG
64 TGATCAGA
** * * * * * * *
3244066 GATTAAA-CAACGTA-TTGAAAAATGAAAACGATAGGGATTAAAGCACGAGTTAGAAAATGAAAA
1 GATTAAATC-ACG-AGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
*
3244129 CGATC-GA
64 TGATCAGA
* ** * * * * *
3244136 GATTAAACCATAAGTCAGAAAATGATAATGACAATGAAGATTATCCAAATTAAATTAGGAGTCAA
1 GATTAAATCACGAGTCA-AAAA--ATAA--A-AAT---G---ATCGAGATTAAATCATGAGTCAG
3244201 AAAATGAAAATGA--ATGA
54 AAAATGAAAATGATCA-GA
* * * * * * * * * *
3244218 GATCAAAACGCAAGTTAAAAAATGAAAATGATCGAAATTAAAGCATGTGTCAGAAAATGAAAACC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA-T
* *
3244283 GCT-AGT
65 GATCAGA
* * * * ** * * * * * **
3244289 G--TAAA-CCCTGAGTGAGAAAATGAAAACCACCAAGATTAAACCATGAGTTAAAAAATGAAAGC
1 GATTAAATCAC-GAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* * *
3244351 AAT-TGG
65 GATCAGA
* * * * * * * *
3244357 GATTAAA-CAACAAGTCAAAAAATGAAAATGA-CCAGGATTCAAGCACGAGTCAAAAAATAAAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
* *
3244420 TTA-CAGG
64 TGATCAGA
** * * * * * *
3244427 GATTAAA-CAACGTA-TTGAAAAATGAAAACGATAGGGATTAAAGCACGAGTCAGAAAATGTAAA
1 GATTAAATC-ACG-AGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAA
** *
3244490 ACAATGAG-
63 ATGATCAGA
* * * * * *
3244498 GATTAAATCACGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTCAAAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
**
3244563 ATTGGA
66 ATCAGA
* * * * * *
3244569 -ATTAAATGACGAGTCAAAAAATGAAAATGACCG-GCATTAAATCACGAGTCAAAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGA-AAATGAAAA
*
3244632 TGAT-GGA
64 TGATCAGA
* * * * * *
3244639 -AATAGAATCATGAGTCAGAAAATGAAAATGAT-TAGGATTAAACCACT-AGTCAAGAAACA--A
1 GATTA-AATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCA-TGAGTC-AGAAA-ATGA
3244699 AAATGATCAGA
61 AAATGATCAGA
* * * * * * *
3244710 -ATTAAATCACAAGTTAGAAAATAAAAATGA-CTGAAATTAAATGACGAGTCTA-AAACTGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTC-AGAAAATGAAAA
* *
3244772 TGA-CTGG
64 TGATCAGA
* * * * * *
3244779 GATTAAACCATGAATCAAAAAATTAAAACT-A-CTG-GTATTAAA-CTATGAGTTAGAGAAT-AA
1 GATTAAATCACGAGTCAAAAAA-TAAAAATGATC-GAG-ATTAAATC-ATGAGTCAGAAAATGAA
3244839 AATGATC-GA
62 AATGATCAGA
* * * * * * * * *
3244848 GATGAAA-C-C-ATTGCAAAAACTAAAAAGCGATCGGGATTAAACCATTAGTCAAAAAATGAAGA
1 GATTAAATCACGAGT-CAAAAAATAAAAA-TGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
* * *
3244910 -CAACAGG
64 TGATCAGA
* * * * * * * * *
3244917 GATTAAACCACGAGTTAGAGAAATAAAAAAGACCAAAATTAAATCATGAATCAAAAAATGAAAAT
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
**
3244982 GATGGGA
65 GATCAGA
* * * * * * * * * **
3244989 -ATTAAACCATGAGTCAGAAAATTAAAATGATTGAAATTAAATCACGAGTCAAAAAATAAAAACA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3245053 ACCA-A
66 ATCAGA
* * * * * * ** *
3245058 GATTAAACCATGTGTCAAAAAATAAAGACGACTCGA-ACTAAATCACAAGTCAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3245122 GAACCA-A
65 G-ATCAGA
* * * * * ** * * * * ***
3245129 -ACTAAATCACAAGTTAGAAAATGAAAACCACCAAGATTAAACCATGAGTCAAAAAATGAAAGCA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3245193 ATTAG-
66 ATCAGA
* * * * * * * *
3245198 GATTAAA-CGATGAGTTAGAAAATGAAAAACGA-CTAGGATTATACCATGAGTCAAAAAATGAAA
1 GATTAAATC-ACGAGTCAAAAAAT-AAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAA
* * * *
3245261 A-CAACTGG
63 ATGATCAGA
* * *
3245269 GATTAAATCACGAGTCAAAAAATAAAAATGATAGGGATTAAATAACAT-A-TCAAAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAAT--CATGAGTCAGAAAATGAAAA
*
3245332 TGA-CAGG
64 TGATCAGA
* * ** * * * **
3245339 GATTAAATCATGAGTCAAGAAAATGTAAAACAATAGGGATTAAACCACAAGTCA-AAAAGTGAAA
1 GATTAAATCACGAGTCAA-AAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAA-TGAAA
*
3245403 ATGA-CTGA
63 ATGATCAGA
* * * * * * * *
3245411 GATTAAACCATGAGTCAGAAAATGAAAATGATC-AGAATTAAATGACGAGTCAAAAAATGGAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
3245475 GATCAG-
65 GATCAGA
* * * * **
3245481 CATTAAATCACGAGTCAAGGAAATAAAAATGA-CTGAAATCAAATCACAAGTCAGAAAATGAAAA
1 GATTAAATCACGAGTCAA-AAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAA
*
3245545 TGACCA-A
64 TGATCAGA
* * * ** * * *
3245552 GATTAAACCACTAGTCAAGAAACGAAAATGA-CCAGAATTAAATC-TCGAGTCAAAAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCAT-GAGTCAGAAAATGAAAA
*
3245615 TGACCA-A
64 TGATCAGA
* * * * * * * * * * *
3245622 AATTAAATTACAAGTCTAAAATTGAAAATGATTG-GTACTAAACCACGAGTCAGGAAATGAAAA-
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
* * *
3245685 CAACAGG
65 GATCAGA
* ** * * * * * * ** * *
3245692 GATTAAACCATAAGTTAGAAAATGAAAATGACCGAGATGAAACCACCAGTTAAAAAATGAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAAAT
3245757 GATCA-A
65 GATCAGA
* * * * * ** * * * * *
3245763 GACTAAACCATGAGTCAAAAAATGAAGACAATAGGGATTAAA-CTACGAGTCAGAGGAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGA-AAATGAAAA
*
3245827 TGACCA-A
64 TGATCAGA
* * * * * * * * * **
3245834 AATTAAATTAGGAGTTAGAAAATGAAAACGATTG-GAATTAAACCACAAGTCA-AAATATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAA-ATGAAAA
3245897 TGAT-AGA
64 TGATCAGA
* * * * * * *
3245904 AATTAAATCACGACTCAAAAAATAAAAATGATC-AGGATTAAAGCATAAGTCAAAAAATAAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
*
3245968 AATTC-GA
65 GA-TCAGA
* * * * * * *
3245975 -ATTGAATCATGAGCCAAAAAAATGAAAATGAT-AAGGATTAAACCAT-AGGTCAAAAAACT-AA
1 GATTAAATCACGAGTC-AAAAAATAAAAATGATCGA-GATTAAATCATGA-GTCAGAAAA-TGAA
*
3246036 AATGA-CTGA
62 AATGATCAGA
* ** * * * * * * * *
3246045 GATTAAACCGTGGGTTAGAAAATGAAAACGACCAAGATTAAATCATGAGTTAGAAAATGAAAAT-
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3246109 ATC-G-
66 ATCAGA
* * * * **
3246113 GTATTAAATCACAAGCCAGAGAAATAAAAATGATCGAAATTAAATCACAAGTTCA-AAAATGAAA
1 G-ATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAG-TCAGAAAATGAAA
*
3246177 ACGATC-GA
63 ATGATCAGA
* * * * * * *
3246185 GATTAAACCACAAGTCAAAAAATGAAAATGAT--A-A-TAAA-AATTA-TC--AAAATTAAATTG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3246242 CAAGTCAGAA
66 --A-TCAG-A
* * * * * * * *
3246252 AATGAAAATGATCGGGATTAAAACGTGAGTTAAAAAATGAAAATTACCAGAATTAAAGCATGAGT
1 GAT-TAAATCA-CGAG-TCAAAA----A-AT-AAAAATG---A-T-CGAG-ATTAAATCATGAGT
*
3246317 TAGAAAATGAAAATGA-CTAG-
51 CAGAAAATGAAAATGATC-AGA
* * * * ** * * ** * *
3246337 GACTAAA-CACTGAGTGAGAAAATGAAAACCA-CTAGGATTAAACCACAAGTCAAAAAATGAAAG
1 GATTAAATCAC-GAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
**
3246400 CAATCA-A
64 TGATCAGA
* * * * * * * * *
3246407 GATTAAATGATGAGTCAGAAAATGAAAAACGA-CTAGGATTATA-CAATAAATCAAAAAATGAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGA-GATTAAATC-ATGAGTCAGAAAATGAAA
3246470 ATGA-CTAG-
63 ATGATC-AGA
* * * ** *
3246478 GATTAAATCATGAGTCAAAAAATTAAAATGA-CAAGGATTAAA-CA--ACACATTGAAAAAAGAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCA--G-AAAATGAA
*
3246539 AATGA-CAGG
62 AATGATCAGA
* * * * * ** * * * *
3246548 GATTAAAACATGAATCAGAAAATGTAAAACAATGGGGATTAAACCATAAGTCA-AAAAGTGAAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAA-TGAAAA
*
3246612 TGACCA-A
64 TGATCAGA
* * * * * * * * *
3246619 AATTAAACCACGAGTCAAAAAATGAAAACGAT-TAGGATTAAATCACGAGTAAGAAAATAAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
3246683 GA-CTAG-
65 GATC-AGA
* * * * * *
3246689 GATTAAACCACGAGTCAGAAAATAAAAATGACTTG-GGTTAAATCAT-AGGCAAAAAAATG-AAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTC-AGAAAATGAAAA
**
3246751 TGA-CCCA
64 TGATCAGA
* * * * * * *
3246758 GATTAAATCATGAGCCAAAAAAT-GAAA--AT---GATTAAA-CTAGGGGTTAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATGAAAAT
*
3246816 GAT-TGA
65 GATCAGA
* * * * * * * **
3246822 AATTAAACCATGGGTTAGAAAATGAAAATGATCGAGATTAAATCATGAGTCAGTCAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3246887 ATC-G-
66 ATCAGA
* * * * * *
3246891 GTATTAAATCACAAGCCAGAGAAACAAAAATGAT-GAAAATTAAATCACGAGTCAGAAAATGAAA
1 G-ATTAAATCACGAGTCA-AAAAATAAAAATGATCG-AGATTAAATCATGAGTCAGAAAATGAAA
* *
3246955 ACGATTA-A
63 ATGATCAGA
* * * * * * * * *
3246963 GATTTAACCAAGAGTTAGAAAATGAAAACAATAATGAACATTACCAAAATTAAATTACGAGTCAG
1 GATTAAATCACGAG-T-CAAAA--AATA-AA-AATG---A-T--CGAGATTAAATCATGAGTCAG
* *
3247028 AAAATAAAAATTATCCAGA
54 AAAATGAAAATGAT-CAGA
** * * * * * * * ** * *
3247047 -AAAAAAT-GCGTGTTAAAAAATTAAAACGA-CTAGAATTAAAGCGCGAGT-A-AAAA-AAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
*
3247106 G-GCTAG-
65 GATC-AGA
* * * * ** * * * * * **
3247112 GA-TAAA-CCCTAAGTGAGAAAATAAAAACCACCAAGATTAAACCACGAGTCAAAAAATGAAAGC
1 GATTAAATCAC-GAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3247175 GATTAG-
65 GATCAGA
* * * * * *
3247181 GATTAAA-CAACAAGTCAGAAAATGAAAAACGA-CCAGGATTATA-CTATGAGTCAAAAAATGAA
1 GATTAAATC-ACGAGTCAAAAAAT-AAAAATGATCGA-GATTAAATC-ATGAGTCAGAAAATGAA
*
3247243 AATGATC-GG
62 AATGATCAGA
* * *
3247252 GATTAAAGCACGAGTCAAAAAATAAAAATGAT-AAGGATTAAA-CA--AGGCATCGAAAAATGAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCA--G-AAAATGAA
*
3247313 AATGAT-AGG
62 AATGATCAGA
* * * * ** * * ** ** *
3247322 GATTCAA-CATGAGTCAGAAAATGTAAAACAATGGGGATTAAGCCACAAGTTA-AAAACTGAAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAA-TGAAAA
*
3247385 TGAT-GGA
64 TGATCAGA
* * * * * * *
3247392 GATTAAACCACGAGTGAAAAAATGAAAATGTTC-AGAATTAAATGATGACTCAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
3247456 GA-CAG-
65 GATCAGA
** * * * *
3247461 GCATTAAATCATAAGTC-AAAAATAAAAATGA-CTAGAATCAAATCATGAGTTACAAAATGAAAA
1 G-ATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
* *
3247524 TG-TCTGG
64 TGATCAGA
* * * * * * * * *
3247531 GATTAAACCACTATTTAAGAAATGAAAACGA-CTAGAATTAAATCATGAGTTAGAAAA-GAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATG-AAAA
*
3247594 TGAACA-A
64 TGATCAGA
* * * * * * ** * *
3247601 AATTAAATCACGAGTCTAAAACTGAAAATGATTG-GATTAAACCACAAGTCAAAAAATTAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3247665 AT-AGG
66 ATCAGA
* * * * * * * *
3247670 GATTAAA-CTATGAGTTAGAGAAT-AAAAT-AACTGAGATGAAACCACT-AGTCAAAAAATGAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCA-TGAGTCAGAAAATG-AA
*
3247731 AATGATC-GG
62 AATGATCAGA
* * * * * * * * * *
3247740 GATTAAACCATGAGTCAGAAAATGAAGA-CAACGAGGATTAAACCATGAGTTAGAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGA-AAATGAAAA
* * *
3247804 TAACCATA
64 TGATCAGA
* * * * * * * **
3247812 -ATTAAATCATGAGTCAGAAAAGATTAAACCATGTGTCAGAAAATAAA-AATGACTTGGATTAAA
1 GATTAAATCACGAGTCA-AAAA-A-TAAA-AATG-ATC-GAGATTAAATCATGAGTCAGA--AAA
* *
3247875 TCACAA-G-TCAGAA
58 TGAAAATGATCAG-A
* * * ** * ** * *
3247888 AATGAAAATGATTAGGATTAAACCATGGGTCAAAAAATGAAAATGACCGAGATTGAACCATTG-G
1 GAT-TAAATCACGA-G-TCAAA--A--AAT--AAAAATG---AT---CGAGATTAAATCA-TGAG
* * *
3247952 TTAGAAAATGAAAACGACCA-A
50 TCAGAAAATGAAAATGATCAGA
* * * * * * *
3247973 GATTAAATCATGAGTTAGAAAATGAAAACGATC-AGCATTAAATCATAAG-CTAGAAAAGTAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTC-AGAAAA-TGAAA
*
3248036 ATGAT-TGA
63 ATGATCAGA
* * * * ** * **
3248044 AATTAAATCATGAGTCAGAAAATGAAAACAATTGAGATTAAATCACAAGTCAGAAAATGAAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-----A
*
3248109 ATAATGAAAATGACTGA
61 A-AATG---AT--CAGA
* * * * * * * * *
3248126 AATTATATTATGAGTCAGAAAATGAAAATGATCGGGATTAAGA--AGTGAGTTAAAAAATG-AAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAA-ATCA-TGAGTCAGAAAATGAAAA
*
3248188 TGA-CTG-
64 TGATCAGA
* * * * * * **
3248194 GAATTAAAGT-ATGAGTCAGAAAATGAAAATGATTCG-GACTAAACCCT-AAACGAGAAAATGAA
1 G-ATTAAA-TCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTC-AGAAAATGAA
3248256 AACT-AGT-AG-
62 AA-TGA-TCAGA
* * * * ** *
3248265 GATTAAACCACAAGTCAGAAAATGAAAGCGATCGACATTAAA-CGATGAGTCAGAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATG-AAAA
3248329 TGA-CTAG-
64 TGATC-AGA
* * * * * *
3248336 GATTATACCACGAATCAAAAAATGAAAATGA-CTGAGATTAAATCATGAGTCAAAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3248400 GA-CAGG
65 GATCAGA
* ** * * * *
3248406 GATTAAA-CAAC-ATATTGAAAAATGAAAATGA-CAGGGATTAAAGCACGAGTCAGAAAATGTAA
1 GATTAAATC-ACGA-GTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATG-AA
** * *
3248468 AACAAT-GGG
62 AATGATCAGA
* * * * * * * * *
3248477 GATTAAACCACAAGTCAAAAAGTGAAAATGATCAAGATTAAACCATGTGTCAAAAAATGAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3248542 A-CCGA
66 ATCAGA
* * * * * * * ** * *
3248547 GATTAAATCATGAGTTAGAAAATAAAAACGACCAAGATTAAACCACAAGTCAGAAAATAAAAATA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3248612 ACTC--T
66 A-TCAGA
* * * * *
3248617 GATTAAATCAC-AGGCCAAAAAAT-GAAATGACCCG-GATTACATCATG-GGCTAGAAAATGAAA
1 GATTAAATCACGA-GTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTC-AGAAAATGAAA
** *
3248678 ACAACCA-A
63 ATGATCAGA
* * * * * * * * **
3248686 GATTAAACCATGGGTCAGAAAATGAAAATGA-CAGAGATTAAACCATGGGTTAGAAAATGAAAGC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3248750 GAT-TGA
65 GATCAGA
* * ** *
3248756 GATTAAATCACGAGTCAAAAAATGAAAATGATAG-GTATTAAATCACAAG-CTAGAGAAATAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTC-AGA-AAATGAAA
3248819 ATGATCA-A
63 ATGATCAGA
* * * * * *
3248827 AATTAAATCACGAGTCAAAAAATGAAAATGATTGAGATTAAACCACGAGTCAAAAAATGAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG---A--
* *
3248892 ATAATGAAAATTATTA
61 A-AATG---ATCA-GA
* * * * ** * * * * *
3248908 GAATTAAATTATGAGTCAAAAAATGAAATTGGCCAAGATCAAAAT-GTGAGTTAAAAAATGAAAA
1 G-ATTAAATCACGAGTCAAAAAATAAAAATGATCGAGAT-TAAATCATGAGTCAGAAAATGAAAA
**
3248972 TGATTGGA
64 TGATCAGA
* * * * * * * *
3248980 -ATTAAAGCACGAGTCAGAAAATGAAAATGA-CTAGGAATAAACCCTAAG-CGAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTC-AGAAAATGAAAA
** *
3249042 CCACCA-A
64 TGATCAGA
* *** * ** * ** *
3249049 GATTAAAGCACGAGTCAAAAAATAAAAGCAATTG-GAAGGAAATGACAAGTCAAAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATG-AAAA
** *
3249113 CAATC-GG
64 TGATCAGA
* * * ** * * *
3249120 GACTATACCACGAGTCAAAAAACGAAAACGA-CCAGGATTAAATCATGAGTCA-ATAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGA-AAATGAAAA
*
3249183 TGAT-AGG
64 TGATCAGA
* * *** * * * * * * *
3249190 GATCAAA-CAATGCA-TTGGAATATGAAAACGATAGGGATTAAAGCATGAGTTAGAAAATGTAAA
1 GATTAAATC-ACG-AGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAA
* * *
3249253 A-CAACAGG
63 ATGATCAGA
* ** * * * *
3249261 GATTAAACCATAAGTCAAAAAGTGAAAATGATCGAGATTAAACCACGAGTCAGAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
**
3249326 ATTGGA
66 ATCAGA
* * * * * * * * * *
3249332 -ATTAAA-CGATGAGTCAAAAAATGAAAATGACCAACAGTAAATCATAACTCAAAGAAATAAAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGA-AAATGAAAA
**
3249395 TGATTGGA
64 TGATCAGA
* * * * * * ** *
3249403 -ATCAAATCACAAATCAGAAAATAAAACTGA-CTAAGATTAAGCCACT-AGTCA-AGAAACGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCA-TGAGTCAGA-AAATGAAA
**
3249464 ACAATCA-A
63 ATGATCAGA
* * * * * * *
3249472 AATTAAATCACAAGTCAAAAAATAAAAATGACCAAAATTAAAT--TGCAAGTCTA-AAACTAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATG--AGTC-AGAAAATGAAA
*
3249534 ATGAT-TG-
63 ATGATCAGA
* ** * * * * ** *
3249541 GTATTAAACCACGAGTCAGGAAATGAAAA-CAACAGGGATTAAA-CAACAAGTTAGAAAATGAAA
1 G-ATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATC-ATGAGTCAGAAAATGAAA
*
3249604 ATGAT-TGA
63 ATGATCAGA
* * * * * * * * * * *
3249612 GATGAAACCACCAGTTAGAAAATGAAAAATGATCAAGATTAAACCATAAGTCAAAAAATGAAGAC
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* *
3249677 AAT-AGG
65 GATCAGA
** * * * * ** * * *
3249683 GATTAAA-CTACGAGTCAGAGGAATAAAAATGACCAAAATTAAGTCACAACTTAGAAAATGGAAA
1 GATTAAATC-ACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
*
3249747 CGA--AGGA
64 TGATCA-GA
* * * * * * ** * *
3249754 AATTAAACCACAAGTCAAAATATGAAAATGATCGAAATTAAATCACAAGTCAAAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3249819 ATC-GG
66 ATCAGA
* ** * ** *
3249824 GATTAAACCACGAGTC-AAAAATAAAAACAACTCGA-ATTGAATCATGAACCAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3249887 GACCAG-
65 GATCAGA
* * * * * *
3249893 GATTAAACCA-TAGGTCAAAAACCT-AAAATGA-CTAGGATTAAA-CTATGGGTTAGAAAATGAA
1 GATTAAATCACGA-GTCAAAAA-ATAAAAATGATCGA-GATTAAATC-ATGAGTCAGAAAATGAA
*
3249954 AACGATC-GA
62 AATGATCAGA
* * * * * ** * * *
3249963 GATTAAATCATGAGTTAGAAAATGAAAAT-ATCGATATTAAATCACAAGCCAAAGAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGA-AAATGAAAAT
3250027 GATCCA-A
65 GAT-CAGA
* * * *
3250034 -ATTAAATCACGAGTTC-AAAAATGAAAACGATCGAGATTAAACCACGAGTCAAAAAATGAAAAT
1 GATTAAATCACGAG-TCAAAAAATAAAAATGATCGAGATTAAATCATGAGTC-----A-GAAAAT
*
3250097 GATAATAAAAATTATCA-A
59 G------AAAATGATCAGA
* * * * * * * *
3250115 AATTAAATTATGAGTTAGAAAATGAAAATGAGTAG-GACTAAA-CACTGAG-CGAGAAAATGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCA-TGAGTC-AGAAAATGAAA
**
3250177 ACCA-CTAG-
63 ATGATC-AGA
* * * ** * *
3250185 GATTAAATCACAAGTCAGAAAATGAAAGCGATCAAGATTAAA-CGACGAGTCAGAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATG-AAAA
* *
3250249 CG-GCTAG-
64 TGATC-AGA
* * * * * * *
3250256 GATTATA-CAAGAAATCAAAAAATCAAAATGA-CTAGGATTAAATCATGAGTCAAAAAATAAAAA
1 GATTAAATCACG-AGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
3250319 TGA-CA-A
64 TGATCAGA
* ** * * * * *
3250325 GGATTAAA-CAAC-ACATTGAAAAATGAAAATGA-CAGGGATTAAAACATGAATCAAAAAATGTA
1 -GATTAAATC-ACGA-GTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATG-A
* *
3250387 AAA-AAT-AGG
61 AAATGATCAGA
* ** * * * * * * *
3250396 GATTAAACCATAAGTCAAAAACTAAAAAT-AACTAGGATTAAACCACGAGTTAGAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
* *
3250460 GACCTG-
65 GATCAGA
* * * * * * * * *
3250466 GATTAAATCATG-GGCAAAAAA-ATGAAATGACCTAGATTAAATTATGAGCCAAAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATA-AAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3250529 GACCA-A
65 GATCAGA
* * * * * * * * * *
3250535 GATTAAACCAGGGGTCAGAAAATGAAAATGATCGAAATTAAACCATGGGTTAGAAAATGAAATTG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3250600 A-CAGA
66 ATCAGA
* * * * ** * *
3250605 GATTAAATCACAAGTCAAAAAATGAAAACGATAG-GTATTAAATCACAAGCCAGAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGA-AAATGAAAA
3250669 TGATC-GA
64 TGATCAGA
* * * * * * *
3250676 AATTAAGTCACAAGTCAAAAAATGAAAACGATCGAGATTAAACCATGAGTTAGAAAATGAAAACA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-----A
*
3250741 ATAATGAAAATTACCGA
61 A-AATG---A-T-CAGA
* * * * ** * * * *
3250758 AATTAAATTATGAGTCAAAAAATAAAAATTATCGAGAAAAAATGC--GAGTTAAAAAACGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAAT-CATGAGTCAGAAAATGAAAAT
*
3250821 GACCAGA
65 GATCAGA
* * * * * * * * * *
3250828 -ATTAAAGCAGGAGTCACAAAAAGAAAACA-GCTAG-GA-TAAACCCTAAGTGAGAAAATAAAAA
1 GATTAAATCACGAGTCA-AAAAATAAAA-ATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
** *
3250889 CCACCA-A
64 TGATCAGA
* * * ** * * *
3250896 GATTAAACCACAAGTCAACAAATAAAAGCGATTTG-GATTAAAT-AAGAAGTCAAAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATG-AGTCAGAAAATG-AAA
* *
3250959 ATGAT-TGG
63 ATGATCAGA
* * * * * *
3250967 GATTATA-CTACGAGTCAAAAAATGAAAATGATCGGGATTAAAGCATGAGTCAAAAAATAAAAAT
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3251031 GAT-AGG
65 GATCAGA
* * * ** * * ** *
3251037 GATTAAA-CATGAGTCAGAAAATGTAAAACAATGGGGATTAAGCCATAAGTCA-AAAACTG-AAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAA-TGAAAA
*
3251099 TGACCA-A
64 TGATCAGA
* * * * ** * * *
3251106 -ATTAAACCACAAGTCCAAAAATGAAAATG-TTTAGAATTAAATGATGACTCAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
*
3251169 GATC-GT
65 GATCAGA
* ** * * * * * * *
3251175 TATTAAATCATAAGTC-ATAAATAAAAATGACCAAAATCAAATCATGAGTTAGAAAATGAAACTG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
* *
3251239 A-CCGG
66 ATCAGA
* * * * ** * * * *
3251244 GATTAAACCACTACTCAAGAAACGAAAATGA-CTAGAATTAAATCACGAGTTAGAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
*
3251308 GAAC-GA
65 GATCAGA
* * * * * * * * *
3251314 AATTAAATCATGAGTC-TAAAATAGAAAATGATTGGGATGAAA-CTACGAGTCAAAAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATA-AAAATGATCGAGATTAAATC-ATGAGTCAGAAAATGAAAA
*
3251377 TGA-CAGT
64 TGATCAGA
* * * * * * *
3251384 GATTAAA-CTATGAGTTAGAGAAT-AAAATGATCGAGATGAAACCACT-AGTCAAAAAATGAAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAGATTAAATCA-TGAGTCAGAAAATG-AAA
* * *
3251446 ATGGT-TGG
63 ATGATCAGA
* * * * * * * * * *
3251454 GATTAAACCATGAGTTAGAGAAATAAAAATGACCAAAATTAAATCACGAGTCAAAAAATAAAAAT
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
**
3251519 GA-CCTA
65 GATCAGA
** * * * * *
3251525 GATTAAATCATAAGTCAAAAAATGAAAATGATTGGGATTAAACCAT-AGGTCAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGA-GTCAGAAAATGAAAAT
*
3251589 GAT-TGA
65 GATCAGA
* * * * * * * * * **
3251595 GATTAAACCATGGGTTAGAAAATGAAAATGACCAAGATTAAATCATGAGTTAGAAAATGAAAACA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3251660 AT-TGA
66 ATCAGA
* * * * * * *
3251665 CATTAAATCACAAGCCAGAAAAGTAAAAATGATTGAAATTAAATCATGAGTTAGAAAATGGAAAC
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAAT-G--A-
*
3251730 GATAATGAAAATTACTGA
61 -A-AATG---A-T-CAGA
* * * * * * * * *
3251748 AATTATATTATGAGTCAGAAAATGAAAATGAT-TAGGATTAAGA-CATGAGTTAAAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAA-ATCATGAGTCAGAAAATGAAAA
* *
3251811 -CA-AATGA
64 TGATCA-GA
* * * * * * *
3251818 AATTAAAGCACGAGTCAAAAAATAAAAATGACTCGA-ACTAAACCCTTAG-CGAGAAAATTAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTC-AGAAAATGAAAA
** *
3251881 ACATTAG-
64 TGATCAGA
* ** ** * *
3251888 GATTAAACCATAAGTCAAAAAATGGAAGTGATCGACATTAAA-CAATGAGTCAGAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATG-AAAA
3251952 TGA-CTA-A
64 TGATC-AGA
* * * * * * *
3251959 GATTATA-CTACGAATTAAAAAATGAAATTGA-CCAGGATTAAGTCATGAGTC-----A--AAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
* *
3252015 --ATCGGG
64 TGATCAGA
* * ** * * * **
3252021 GATTAAAACACAAGTCAAAAAGCAAAAATGATCAAGATTAAACCA-CATGTCA-AAAAACAGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGA-GTCAGAAAATGA-AAA
* *
3252084 GGATAAG-
64 TGATCAGA
* * * * ** *
3252091 GATTAAATCATGAGTCAAAAAATAAAAACGA-CCAGGATTAAACCACAAGTCAGAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
***
3252155 GA-CTTT
65 GATCAGA
* * * * * *
3252161 GATTAAATCAC-AGGCCAGAAAAT-GAAATGACCCAGATTAAATCATG-GGCTAGAAAATGAAAA
1 GATTAAATCACGA-GTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAATGAAAA
* *
3252223 CGACCA-A
64 TGATCAGA
* * * * * * * * * * * *
3252230 GATGAAACCATGGGTCAGAAAATGAAAATGATAGGGATTAAACCATGGGTTAGAAAATGAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3252295 A-CTA-A
66 ATC-AGA
* * *
3252300 GATTAAATCACGAGTCAGAAAATTAAAATGATCG-GTATTAAATCA-CACG-CTAGAGAAAT-AA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGA-GTC-AGA-AAATGAA
*
3252361 AACTGAT-TGA
62 AA-TGATCAGA
* * * * * * * * *
3252371 AATTAAATCACGAGTTAGAAAATGAAAATGATTGAAATTAAACCATGAGTCAAAAAATGAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3252436 ATAATGAAAA
66 ATCA-G---A
* * * * * * ** * * * * *
3252446 TTATCAAAATGAAATTATGAGCCAAAAAATGAAATTGGCCAAGATCAAAAT-GTGAGTTAAAAAA
1 -GAT-----T-AAATCACGAGTCAAAAAATAAAAATGATCGAGAT-TAAATCATGAGTCAGAAAA
* *
3252510 TGACAACGATTC-GA
58 TGAAAATGA-TCAGA
* * * * * * * * * *
3252524 -ATTAAAGCATGAGTCAGAAAATGAAAACGA-CTAGGAATAAACCCTAAG-CGAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTC-AGAAAATGAAAA
** *
3252586 CCACCA-A
64 TGATCAGA
* * * * ** * ** * *
3252593 GATTAAACCACGAGTCAAAAAATGAAAGTGATCAAGAGGAAATGACAAGTCAAAAAATGAAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAAAT
*
3252658 GACCA-A
65 GATCAGA
* * * * * * * * * *
3252664 GACTATACCATGAGTCAAAAAATGAAAATGA-CCAGGATAAAATCATGACTCAAAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
* *
3252728 GACCAGG
65 GATCAGA
* * * * * * *
3252735 GATTAAA-CAATGCA-TCGAAAAATGAAAACGA-CAGGGATTAAAGCATGAGTTAGAAAATGTAA
1 GATTAAATC-ACG-AGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATG-AA
** *
3252797 AACAAT-AGG
62 AATGATCAGA
* ** * * * * *
3252806 GATTAAACCATAAGTCAAAAAGTGAAAATGATCAAGATTAAACCACGAGTCAGAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3252871 ATCATA
66 ATCAGA
* * * * *
3252877 -ATTAAA-CAATGAGTCAAAAAATGAAAATGA-CCAGCATTAAATCATGAGTCAAAGAAATAAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGA-AAATGAAA
*
3252939 ATGATTAGA
63 ATGATCAGA
* * * * * * *
3252948 -ATCAAATCATGAATCAGAAAATAAAACTGATC-AGGATTAAACCACT-AGTCA-AGAAACGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCA-TGAGTCAGA-AAATGAAA
3253009 ATGATCAGA
63 ATGATCAGA
* * * * * * *
3253018 -ATTAAATCATGAGT-TAAAAA-AAAAATAACCGAAATTAAATCATGAGTCTA-AAACTAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAATGAAAAT
*
3253079 GA-CTA-C
65 GATC-AGA
** * * * * * * *
3253085 GATTAAATCACGAGTCAGGAAATTAAAA-CAACAGGGATTAAACCATGAGTCAGAGAGTGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAAT
3253149 GA-CTA-A
65 GATC-AGA
* * * * * * *
3253155 GATGAAACCACTAGTCAGAAAATGAAAAATGATCAAGATTAAA-CTATGAGTCAAAAAATGAAGA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATGAAAA
** * *
3253219 CAAT-GGG
64 TGATCAGA
* ** * * * * *
3253226 GATTAAACCACGAGTCAGAGGAATAAAAATGACCAAAATTAAATCACGAGTTAGAAAATGAAAAT
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3253291 GATGAGA
65 GATCAGA
* * * * * * * *
3253298 -ATTAAACCACAAGTCAGAAAATGAAAATGATCGAGATTAAATCACGAGTCAAAAAATAAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3253362 ATC-GA
66 ATCAGA
* ** * * *
3253367 TATTAAATCATAAGTTAAAAAATAAAAATGACTCGA-ATTAAATCATGAGCCAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3253431 GATC-GG
65 GATCAGA
* * * * * * * * *
3253437 GATTAAACCATGGGTTAGAAAATAAAAA-CAACTGAGATTAAACCAT-AGGTTAG-AAA--AAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGA-GTCAGAAAATGAAAA
*
3253497 T-AACTA-A
64 TGATC-AGA
* * * * ** * *
3253504 GATTAAATCACAAGTTAAAAAATGAAAATGATTG-GTATTAAATCACAAGCCAGAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGA-AAATGAAAA
3253568 TGATC-GA
64 TGATCAGA
* ** * * * * **
3253575 AATTGCATCATGAGTTC-AAAAATGAAAATGATTGAGATTATTAAACCACCAGTCAAAAAAAGAA
1 GATTAAATCACGAG-TCAAAAAATAAAAATGATCGAG---ATTAAATCATGAGTC------AGAA
* *
3253639 AATGATAATGAAAATTATAGA
56 AATGAAAATG---A-T-CAGA
* * * * * * * * * * *
3253660 AACTAAATTACGTGTCATAAAATAAAAATGACCGGGATTAAAACATGAGTTAAAAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAG-TCAGAAAATGAAAAT
*
3253725 AATC-GA
65 GATCAGA
* * * * * * * * * * * * **
3253731 AATTAAAGCATGAGTCAAAAAATGAAAATAATTGGGACTAAACCCTTAGTGAGAAAATGAAAACC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3253796 A-CTAG-
66 ATC-AGA
* * * * ** *
3253801 CATTAAAACTACGAGTTAGAAAATAAAAGCGATTG-GATTAAA-CGATGAGTCA-AAAATTGAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAA-TG-AA
3253863 AATGA-CTAG-
62 AATGATC-AGA
** * * * * *
3253872 GATTGTACCACGAGTCAAAAAA-AGAAAATGA-CTGGGAATAAATCATGAGTCAAAAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATA-AAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAA
*
3253935 TGAT-AGG
64 TGATCAGA
* ** * * * * * *
3253942 GATTAAA-CAAC-ACATTGAAAAATGAAAACGA-CAGAGATTAAAGCACGAGTCAAAAAATATAA
1 GATTAAATC-ACGA-GTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAAT-GAA
** *
3254004 AACAAT-AGG
62 AATGATCAGA
* ** * * * * * * * * **
3254013 GATTAAACCATAAGTCAAAAAGTGAAAATGACCAAGATTAAACCA-CAGTCAAAAAATAAAAACA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3254077 ACCAG-
66 ATCAGA
* * * * * *
3254082 GATTAAACCACAAGT--TAGAA-AAAAATGACTCG-GATTAAATCATGGGCCAGAAAAT-AAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTCAGAAAATGAAAAT
**
3254142 GA-CCTA
65 GATCAGA
* * * * * * * *
3254148 GATTAAATCA-TAGGTTAAAAAATGAAAA-CATCTAGGATTAAACCATGGGTTAGAAAATGAAAA
1 GATTAAATCACGA-GTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
*
3254211 TGA-CCGA
64 TGATCAGA
* * * * ** * *
3254218 GATTAATAAAATCATGGAGTCAGAAAATGAAAATGATCGATATTATAAATCACCAAAGCCAGAGG
1 GA-T--T-AAATCA-CGAGTCAAAAAATAAAAATGATCGAGA-T-TAAATCA--TGAGTCAGA-A
* *
3254283 AATAAAAATGATCAAAA
56 AATGAAAATGATC-AGA
* * * * * * * * * *
3254300 AATTAAATCACAAGTTAGAAAATTAAAACGAT--TGATTAAACCATAAGTCA-ACAAAAGAAGAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGA-AAATGAA-AA
** *
3254362 AAATTA-A
64 TGATCAGA
* * * * * * *
3254369 TA-AAAATTATCGAAATTAAAATTACGAGTCAGAAAATGAAAATGACTGAGATCAAAATGCA-AA
1 GATTAAATCA-CG-AGTCAAAA--A--A-T-A-AAAATG---AT--C-GAGAT-TAAAT-CATGA
* * * *
3254432 GTTAAAAAAATGAAAATGACCAAAA
49 G-TCAGAAAATGAAAATGATC-AGA
* * * * * *
3254457 AATTAAATCACGTGTCAGAAAATAAAAAATG-GCTGAGATTAAACCATGAGTCAAAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAA
*
3254521 TGTTCAGA
64 TGATCAGA
* * * * * * *
3254529 -ATTAAATGATGACTCAAAAAATGAAAATGATAG-GCATTAAATCATAAGT-A-AAAA-AAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
*
3254589 GACCA-A
65 GATCAGA
* * * * * * * * * *
3254595 AATCAAATCATGAGTTAGAAAATGAAAATGACCAAGATTAAACCACT-ACTCA-AGAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCA-TGAGTCAGA-AAATGAAAA
3254658 TGA-CTAGA
64 TGATC-AGA
* * * * * ** * *
3254666 -ATTAAATCATGAGTTAGAAAATAAAAATGAAT-AAAATTAAATCACAAGTTTA-AAACTGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATG-ATCGAGATTAAATCATGAG-TCAGAAAATGAAAA
*
3254728 TGA-CAGG
64 TGATCAGA
* * * * * *
3254735 GATTAAACCATGAGTCAAAAAATTAAAATGA-C-AGGA-TAACT-ATGAGTTAGAGAAT-AAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
3254795 GA-CTA-A
65 GATC-AGA
* * * * * * * * * *
3254801 GATGAAACCACTAGCCAAAAAATGAAAAACGATCGGGATTAAACCACGAGTCAAAAAATGAAGA-
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* * *
3254865 CAACAGG
65 GATCAGA
* * * * * * **
3254872 GATTAAACCACGAGTTAGAGAAATAAAAATGA-CCAGAATTAAATCATTAGTTAGAAAACAAAAA
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
*
3254936 TGACCAG-
64 TGATCAGA
* * * ** *
3254943 GATTAAA-C-CGCATGT-TAGAAATAAAAATGACCTG-GATTAAATCACAAGTCAAAAAATGAAA
1 GATTAAATCACG-A-GTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAA
*
3255004 ATGATC-GG
63 ATGATCAGA
** * * * * *
3255012 GATTAAA-C-C-A-T----AGGTGAAAACGA-CTGAGATTAAACCATGGGTTAGAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3255068 GACCA-A
65 GATCAGA
* *** * * ** * *
3255074 GATTAAATCATGAGTTGGAAAATGAAAACGATCG-GCATTAAATCACAAGCCAGAAAAGTAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAA-TGAAAA
* *
3255138 TGGT-TGA
64 TGATCAGA
* * * * ** * * * *
3255145 AATTAAATCATGAGTCAGAAAATGAAAACAATTGAGATTAAACCATGACTCATAAAATGAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG---A--
*
3255210 ATAATGAAAATTACTGA
61 A-AATG---A-T-CAGA
* * * * * * **
3255227 AATTATATTATGAGTCAGAAAATGAAAATGATC-AGGATTAAGA-CGCGAGTTCA-AAAATGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAA-ATCATGAG-TCAGAAAATGAAA
3255289 ATGATC-GA
63 ATGATCAGA
* * * * * ** * * * * **
3255297 AAATAAAGCACGAGTCAGAAAATGAAAGCGACTTG-GACTAAACCCT-AAACGAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTC-AGAAAATGAAAA
**
3255360 CCA-CTAG-
64 TGATC-AGA
* * * * * ** * * *
3255367 GACTAAACCACAAGTCAGAAAATGAAAGCGATCGACATTAAATTATGAGTCATAAAATGAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAAAT
* *
3255432 GA-CTGG
65 GATCAGA
* * * * * * *
3255438 GATTATACCACGAATCAAAAAATGAAAATGATTGAGATTAAATAATGAGTCAAAAAAT-AAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3255502 AT-AGG
66 ATCAGA
* ** * * * *
3255507 GATTAAA-CAAC-ATATTGAAAAATGAAAACGA-CAGGGATTAAAGT-ATGAGTCAAAAAATGTA
1 GATTAAATC-ACGA-GTCAAAAAATAAAAATGATC-GAGATTAAA-TCATGAGTCAGAAAATG-A
** * *
3255568 AAACAAT-GGG
61 AAATGATCAGA
* * ** * *
3255578 GATTAAACCACAAGTCAAAAAA-AGCGAAAATGATTAAGATTAAACCA-CATGTCA-AAAATGAA
1 GATTAAATCACGAGTCAAAAAATA---AAAATGATCGAGATTAAATCATGA-GTCAGAAAATGAA
3255640 AATGA-CTAG-
62 AATGATC-AGA
* * * * * * *
3255649 GATTAAATCTCAAGTCAAAAAATAAAAACGA-CCAGCATTAAACCATAAGTCAGAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
*
3255713 GACTC--T
65 GA-TCAGA
* * * * * * * *
3255719 GATTAAATCA-TAGGCCAGAAAAT-GAAATGACCCAGATTAAATCATGGGCCA-AAAACTGAAAA
1 GATTAAATCACGA-GTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAA-TGAAAA
* *
3255781 CGACCA-A
64 TGATCAGA
* * * * * * * * * * *
3255788 GATTAAACCA-TAGGTTAGAAAATGAAAATGATAGGGATTAAACCATGGGTTAGAAAATGAAAAC
1 GATTAAATCACGA-GTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3255852 GA-CTGA
65 GATCAGA
* * * ** *
3255858 GATTAAATCACGAGTCAAAAAATGAAAA-CAACG-GTATTAAATCACAAG-CTAGAGAAATAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTC-AGA-AAATGAAA
3255920 ATGAT--GA
63 ATGATCAGA
* * * * * * * * * *
3255927 AATTAAATAACGAGTTAGAAAATGAAAACGATTGAGATTAAACCACGAATCAGAAAATGTAAACA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-----A
3255992 ATAATGAAAATTATCA-A
61 A-AATG------ATCAGA
* * * * * * * * * * * *
3256009 AATTAAATTATGAGTCAAAAAATGAAATTGGTCAAGATAAAAAT-GTGAATTAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGAT-TAAATCATGAGTCAGAAAATGAAAAT
*
3256073 GATCGGA
65 GATCAGA
* * * * * * * * * * * * **
3256080 -ATTAAAGCACGAGTTAGAAAATGAAAATGGTTGGGA-TAAACCTTGAGTGAGAAAGTAAAAACC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3256143 ACCA-A
66 ATCAGA
* * * * * * * * *
3256148 GGATTAAA-CATGAGTCAAAAAATGAAAGTGATTGGGATTAAATAATGACTCAAAAAATTAAAAA
1 -GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAA-TGAAAA
*
3256212 CGATC-GA
64 TGATCAGA
* * * *
3256219 GATTATA-CTAC-ATGTCAAAAAATAAAAATGATC-AGGATTAAAGCACGAGTCA-AAAACTAAA
1 GATTAAATC-ACGA-GTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAA-TGAA
* *
3256280 AATAATAAG-
62 AATGATCAGA
* ** * * * * *
3256289 GATTAAA-CAACGCA-TCAAAAAATGAAAATGAAAGGGATTAAAGC--GAGTTAAAAAATATAAA
1 GATTAAATC-ACG-AGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAAT-GAAA
**
3256350 ACAAT--GA
63 ATGATCAGA
* ** * * * * *
3256357 GATTAAACCATAAGTCAAAAACT-AAAATTA-CTGAGATTTAAACCACGAGTCAAAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGA-TTAAATCATGAGTCAGAAAATGAAAA
**
3256420 CAATC-GA
64 TGATCAGA
* * * *
3256427 AATTAAATGACAAGTCAAAAAA-AGAAAATGA-CTG-GCATTAAATCATGAGTCA-AAGAAAGAA
1 GATTAAATCACGAGTCAAAAAATA-AAAATGATC-GAG-ATTAAATCATGAGTCAGAA-AATG-A
*
3256488 AAATGACCAGA
61 AAATGATCAGA
* * * * * * * *
3256499 -ATCAAATCATGAGTTAGAAAATGAAAATGA-CTAGGATTAAACCACT-AGTCA-AGAAATGGAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCA-TGAGTCAGA-AAATGAAA
*
3256560 ATGACCA-A
63 ATGATCAGA
* * * * * * * * * * * *
3256568 AATTTAATCATC-AGTTAGAAAACAAAAATAACCAAAATTAAACCACGAGTCTA-AAACTGAAAA
1 GATTAAATCA-CGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAATGAAAA
3256631 TGA-CTAG-
64 TGATC-AGA
* * * * * * *
3256638 GATTAAA-CAATGAGTCAAAAAATTAAAA-CAACAGGGATTAAACTACA--AGTTAGCAAAT-AA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATC-GAGATTAAA-T-CATGAGTCAGAAAATGAA
* *
3256698 AACGA-CTGA
62 AATGATCAGA
* * * * * * *
3256707 GATGAAACCACCAGTCAAAAAATGAAAAA-CATTTGAGATTAAACCATGAGTCAGAAAATGAAGA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGA-TCGAGATTAAATCATGAGTCAGAAAATGAAAA
* * *
3256771 -CAACAGG
64 TGATCAGA
* * * * * * * *
3256778 GATTAAACCATGAATTAGAGAAATAAAAATGA-CCAGAATTAAATCACGAGTCAAAAAATGAAAA
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
* **
3256842 CGATGGGA
64 TGATCAGA
* * * * * * * *
3256850 -ATTAAACCACGAGTCAAAAAATGAAAATGACCAAAATTAAATCACGAGTCAAAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3256914 ATCAG-
66 ATCAGA
* * * * * * * *
3256919 GATTAAAACAC-ATATTAGAAAATAAAAATGACCTAGATTAAATCACGAGTCAAAAAATGAAAAT
1 GATTAAATCACGA-GTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3256983 GATTAG-
65 GATCAGA
* * * * * * * * * *
3256989 GATTTAACCATGGGTCAAAAAA-AGAAAA-AAACTGATATTAAACCATGGGTTAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATA-AAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAA
*
3257052 CGATC-GA
64 TGATCAGA
* * * ** * *
3257059 GATTAAATCATGAGTCAAAAAATGAAAACGATCG-GTATTAAATCACAAG-CTAGAGAAGTAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTC-AGA-AAATGAAA
*
3257122 ATGAT-TGA
63 ATGATCAGA
* * * * * * * * *
3257130 AATTAAATCATGAGTCAGAAAATGAAAATGAAAATTATTGAAATTAAATTACGAGTCTA-AAATT
1 GATTAAATCACGAGTC----AA--AAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAAT
* *
3257194 GAAAAT-AACTGA
59 GAAAATGATCAGA
* * * * * * * **
3257206 GATTAAAAT-GCGAGTTAAAAAATGAAAA-CAACCAGAATTAAAGCACAAGTCAGAAAATGAAAA
1 GATT-AAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
* *
3257269 TGAT-TGC
64 TGATCAGA
* * * ** * * * ** * * * * *
3257276 GACTATACCTTGAATGAGAAAATGAAAACCG--CCAGGATTAAACCATGGGTCAAAAAATGAAAG
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
*
3257339 CGATC-GA
64 TGATCAGA
* * * * * * * * *
3257346 GATTAAA-CGATGAGTCAGAAAATGAAAAACGATCGGGATTATACCATGAATCAAAAAACGAAAA
1 GATTAAATC-ACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
*
3257410 CGATCA-A
64 TGATCAGA
* * **
3257417 GATTAAATCACGAGT---AAAAGAAAAATGA-CAGGGATTAAAT-AACACGTCAGAAAAATGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGA-GTCAG-AAAATGAAA
* *
3257477 ACGA-CAGG
63 ATGATCAGA
* ** * * * * ** *
3257485 GATTAAAGCATAAGTTAAAAAATGTAAAACAT--TAGCGATTAAACCACAAGTTA-AAAAGTGAA
1 GATTAAATCACGAGTCAAAAAA--TAAAA-ATGATCGAGATTAAATCATGAGTCAGAAAA-TGAA
*
3257547 AATGA-CCGA
62 AATGATCAGA
* * * * * ** *
3257556 GATTAAATCACGAGTTAGAAAATGAAAATGA-CCATGATTTATGAA-AATGA--CA-ATGATTAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GA-TTA--AATCATGAGTCAGAAAATGAA
*
3257616 ATGATGAGTCAAA
62 A--ATGA-TCAGA
* * * ** * ** * * * * * *
3257629 AATGAAAATAATCG-GT-ATTAAATCACGA-G-TCAAAGAAATAAA-AACGACT-AG--AATTAA
1 GAT-TAAATCA-CGAGTCAAAAAATAAAAATGATC-GAG-ATTAAATCATGAGTCAGAAAATGAA
* *
3257686 ATCAAGAGTCAAAA
62 A--ATGA-TC-AGA
* * * *** * * * ** * *
3257700 AATGAAA--ATGA-TC-GGGATTAAACCACTTG-TCAAGA--AACAAAATTGA--C-CAAAATTA
1 GATTAAATCACGAGTCAAAAAATAAA--A-ATGATCGAGATTAA-ATCA-TGAGTCAGAAAATGA
* *
3257755 AATTACGAGCCAGAA
61 AA--ATGA-TCAG-A
* * * ** * ** * * * * * *
3257770 AATGAAA--ATGA-TC--AGGAT-TAAACCA-CTAG-TCAAGACCACCG-GTTAGAAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAA-ATCA-TGAGTCAGAAAATGAAAA
3257826 TGA-CA-A
64 TGATCAGA
* * ** * * * *
3257832 AATTAAATCATGAGTTTAAAACTAAAAA-CAACTG-GATTAAA-CATCGAGTCAGAAAATTAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCAT-GAGTCAGAAAATGAAAA
*
3257894 TGAT-AAA
64 TGATCAGA
* * * * * * * * *
3257901 GATTAAACCATGAGTCAGAGAATGAAAATGA-CCAGGATGAAACCACT-AGTCAAAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCA-TGAGTCAGAAAATG-AAA
*
3257964 ATGATAAG-
63 ATGATCAGA
* * * * ** *
3257972 GA-TAAACCATGAGTCAGAAAATGAAGACAAT-A-AG-GATTAAATCACAAGTCAGAAAATAAAA
1 GATTAAATCACGAGTCAAAAAAT-AA-A-AATGATCGAGATTAAATCATGAGTCAGAAAATGAAA
*
3258033 ACGATCAG-
63 ATGATCAGA
* * * * * *
3258041 GATT-AATCCACGAGTCAAAATATAAAAATGAGTCAAAGAATGAAAATGATTGGGATTA-AACCA
1 GATTAAAT-CACGAGTCAAAAAATAAAAATGA-TC-GAG-AT-TAAATCA-TGAG-TCAGAA--A
*
3258104 TGGGTTAGAAAATGAAAATGATCAG-
57 ----AT-GAAAATGA------TCAGA
* * * * ** * * *
3258129 GATTAAA-C-CGTGGTTAGAAAATGAAAACAATC-AGATTAAATCACGAGTTAAAAAATGAAAAC
1 GATTAAATCACG-AGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA-
3258191 T-ATC-G-
64 TGATCAGA
* * ** * * * * *
3258196 GTATTAAATCACAAGCCAGGGAAATAAAAATGATCGAAAGTAAATTA-GAAGTCAAAAAATAAAA
1 G-ATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATG-AGTCAGAAAATGAAA
3258260 ACT-AT-AGA
63 A-TGATCAGA
* * * * * * * * *
3258268 AATTAAACCACAAGTCAGAAAACCAAAAAAATAATGAAAATTACCAAAATTAAATTACGAGTCAA
1 GATTAAATCACGAGTC---AAA--AAATAAA-AATG---A-T--CGAGATTAAATCATGAGTCAG
* *
3258333 AAAATGAAAGTGA-CCGA
54 AAAATGAAAATGATCAGA
* * ** * * * ** * *
3258350 GATCAAAACGTGAGT-TAAAAAT-TAAATGATCG-GAATTAAAAGCACAAGTTAAAAAATG-AAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATT-AAATCATGAGTCAGAAAATGAAAA
* *
3258411 TGA-CTGG
64 TGATCAGA
* * * * * * ** * * *
3258418 GACTAAA-CCCTAAGTGAGAAAATGAAAACCAT-TAGGATTAAACCATGAGTCAGAAAATGAAAG
1 GATTAAATCAC-GAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
* *
3258481 TAATC-GG
64 TGATCAGA
* * * * * *
3258488 GAATTAAA-CGATGAGTCAAAAATAAAAAAACGA-CAAGGATTATACCATGAGTCA-AAAAT-AA
1 G-ATTAAATC-ACGAGTCAAAAA-ATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAA
*
3258549 AATGACCA-A
62 AATGATCAGA
* * * *
3258558 GATTAAAACATGAGT----AAA-AAAAATGA-CAAGGATTAAA-CAATGCGTCAGAAAATG-AAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATC-ATGAGTCAGAAAATGAAAA
*
3258615 TGA-CAGG
64 TGATCAGA
* * * * * **
3258622 GATTAAAGCATGAGTCAGAAAATGTAGAACAAT-A-AG-GATTAAACCACAAGTCA-AAAAGTGA
1 GATTAAATCACGAGTCA-AAAA-ATA-AA-AATGATCGAGATTAAATCATGAGTCAGAAAA-TGA
*
3258683 AAATGACCA-A
61 AAATGATCAGA
* * * * * * *
3258693 GAATAAA-CAACGAGTCAAAAATTGAAAACGA-CCAGGATTAAA-GATGAGTCAAAAAATGAAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
3258755 TGATCA-A
64 TGATCAGA
* * * * * * * *
3258762 GATTAAACCACTAGTCAAGAAATGAAAAATAAATAGA-ATTAAATCACGAGTCAAAAAAATTAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAAT-GATCGAGATTAAATCATGAGTC-AGAAAATGAAA
*
3258826 ATGACCA-A
63 ATGATCAGA
* * * * * * ** * * * * * *
3258834 AATTAAACCACAAGTCTAAAACTGAAAACAACCAAGATTTAACCATGAGTCAAAAAATTAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3258899 A-CAG-
66 ATCAGA
** * * * * * * * *
3258903 GTATTAAA-CTGTGAGTTAGAGAATGAAAGTGACCGAGATGAAACCACT-AGTCA-AAAATGAAT
1 G-ATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAGATTAAATCA-TGAGTCAGAAAATGAA-
** * *
3258965 AACAAT-TGG
62 AATGATCAGA
* ** * * * * * * * * *
3258974 GATTAAACCGTGAGTCAGAAAATGAAGA-CAACAGGGATTAAACCATGACTCAGAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGA-AAATGAAAA
* *
3259038 TAACCAGA
64 TGATCAGA
* * * * * *
3259046 -ATTAAATCATGAGTTAGAAAATGAAATTGATAG-GAATT-AATCCATG-GTCAGAAAACCAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAAT-CATGAGTCAG----------
* * *
3259107 AAATAATGAAAATTACCATA
54 -AA-AATGAAAATGATCAGA
* * * * * * * *
3259127 -ATTAAATTACGAGTCAGAAAATGAAAGTGATCGAGATCAAA--ATGCGAGTTAAAAAATTAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCAT--GAGTCAGAAAATGAAAA
*
3259189 TGATCATA
64 TGATCAGA
* * * * * * * * * * * * **
3259197 -ATTAAAGCACAAGTTAGAAAATGAAAATAATTGGGACTAAACCTTGAGTGAGAAAATGAAAACC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3259261 A-CTAG-
66 ATC-AGA
* * * * * ** * * *
3259266 GATTAAACCATGACTCAGAAAATGAAAGCGATCGGGATTAAA-CGATGAGTTAAAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATG-AAAA
* *
3259330 CGAT-AGG
64 TGATCAGA
* * * * * * * *
3259337 GATTATACCATGAGTTAAAAAATAAAAATGACCAAGATTAAAACATGAGTCAAAAAAT-AAAAGT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA-T
*
3259401 GATAAG-
65 GATCAGA
* * * * * *
3259407 GATTAAA-CAATGCA-TCAGAAAATGAAAATGA-CAGGGATTAAAGCATGAGTTAGAAAATGTAA
1 GATTAAATC-ACG-AGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATG-AA
** *
3259469 AACAATAAG-
62 AATGATCAGA
* * * * * * * * * *
3259478 GGTTAAACCACAAGTCAAAAAGTGAAAATGACCAAGATTAAATCACGTGTCAAAAAATGAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAAAT
3259543 -ATC-GA
65 GATCAGA
* ** * * *
3259548 GATTCAA-CGATAAGTCAAAAAATGAAAATGA-CCAGGATTAAACCACT-AGTCA-AGAAATGAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCA-TGAGTCAGA-AAATGAA
*
3259609 AACGA-CTAGA
62 AATGATC-AGA
* * * * ** * *
3259619 -ATTAAATCATGAGTCAAAAAAATAAAAATGACCAAAATTAAATCACAAGTCTA-AAACTAAAAA
1 GATTAAATCACGAGTC-AAAAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAATGAAAA
** *
3259682 CAACCA-A
64 TGATCAGA
* * * * * * * *
3259689 GATTAAACCATGAGTCAAAAAATCAAAATGATAG-GTATTAAACCATGAGTTAGAGAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
*
3259753 GA-CCGA
65 GATCAGA
* * * * ** * * * * *
3259759 GATGAAACCACCAATCAAAAAATGAAAAACAATCGGGATTAAACCACGAGTTAGAAAATGAAGA-
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* *
3259823 CAACAG-
65 GATCAGA
* * * * * * * *
3259829 GATTAAACCATGACTTAGAGAAATAAAAAT-AACTAGAATTAAATCATGAGTCAGAAAATGAAAT
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
**
3259893 TGATGGGA
64 TGATCAGA
* * * * * * * * * *
3259901 -ATTAAACCATGAGTCAAAAAATGAAAACGATCAAGATTAAATTATGAGTAAAAAAATAAAAAAG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3259965 A-CTA-A
66 ATC-AGA
* * * * * ** *
3259970 GATTAAACCTCCAGTCAGAAAATAAAAATGACTTG-GATTAAATCACAAGTCAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTCAGAAAATGAAAAT
3260034 GATCAG-
65 GATCAGA
* * * * * * * * *
3260040 GATTAAACCATGGGTTAGAAAATGAAAATCATC-AGGATTAAACCATG-GTTTAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAG-TCAGAAAATGAAAA
*
3260103 T-AGT-TGA
64 TGA-TCAGA
* * * ** * *
3260110 GATTAAATCACGAGTTAAAAAATGAAAACT-ATCGATATTAAATCACAAGCCAGAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGA-AAATGAAAA
3260174 TGATC-GA
64 TGATCAGA
* * * * **
3260181 AAGTAAATCACGAGTCAAAAAATAAAAACT-ATAGAGATTAAACCACAAGTCAGAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAA-TGATCGAGATTAAATCATGAGTCAGAAAATG-----
3260245 AATAATGAAAATTACCAGA
60 AA-AATG---A-T--CAGA
* * * * * * * * * *
3260264 -ATTAAATTACGAGTCAGAAAATCAAAGTGACCGAGATCAAAAT-GTGAGTTA-AAAATTAAAGT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGAT-TAAATCATGAGTCAGAAAATGAAAAT
**
3260326 GATTGGA
65 GATCAGA
* ** * * * * * * * * * * * **
3260333 -ATTAAAGCATAAGTTAGAAAATGACAATGATTGGGACTAAACCCTGAGTGAGAAAACGAAAACC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3260397 ACCA-A
66 ATCAGA
* * * * ** * * * *
3260402 GATTAAACCATGAGTCAGAAAATGAAAGCGATCGGGATTAAATGATGACTCAAAAAATGAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAAAT
*
3260467 GA-CAGG
65 GATCAGA
* * * * * * * *
3260473 GTTTATACCATGAGTCAAAAAATAAAAATGACCGAGATTAAAACATGAGTCAAAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3260538 A-CA-A
66 ATCAGA
* * * * * * *
3260542 GGATTAAA-CAATGTGTCAGAAAATGAAAATGA-CAGGGATTAAAGCATGAGTTAGAAAATGTAA
1 -GATTAAATC-ACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATG-AA
** *
3260605 AACAATAAG-
62 AATGATCAGA
* ** * * * * * * * *
3260614 GATTAAACCATAAGTCAAAAAGTGACAATGACCGAGATTAAA-CTTTAAGTCAAAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATGAAAAT
*
3260678 GACCAG-
65 GATCAGA
* * * * *
3260684 GATTCAA-CGATGAGTCAAAAAATGAAAATGA-CCAGGATTAAACCACT-AGTCA-AGAAATGAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCA-TGAGTCAGA-AAATGAA
*
3260745 AATGACCA-A
62 AATGATCAGA
* * * * ** *
3260754 AATTAAATCACAAGTCAGAAAAATAAAAATGACCGAAATTAAATCACAAGTCTA-AAATTGAAAA
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAATGAAAA
**
3260818 CAATCA-A
64 TGATCAGA
* * * * * * **
3260825 GATTAAACCATGAGTCAAAAAATGAAAATGA-C-AGGTATTGAATTATGAGTTAGAGGATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-G-ATTAAATCATGAGTCAGAAAATGAAAA
*
3260888 TGA-CTGA
64 TGATCAGA
* * * ** * * * * * * *
3260895 GATGAAACCACCAGTCAAAAAATGAAAAACAATTGGGATTAAACCGTGAGTTAGACAATGAAGA-
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* * *
3260959 CAACAGG
65 GATCAGA
* * * * * * *
3260966 GATTGAACCATGACTCAAAGAAATAAAAAT-AACTAGAATTAAATCATGAGTCAAAAAATG-AAA
1 GATTAAATCACGAGTCAAA-AAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
* **
3261029 TCAATGGGA
64 T-GATCAGA
* * * * * * *
3261038 -ATTAAACCACGAGCCAGAAAATAAAAACGATCGAGATTAAATCATGAGTCAAAAAATAAAAAAG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3261102 A-CTA-A
66 ATC-AGA
* * * * * *
3261107 GATTAAAAGCTCGAGTCAAAAAATGAAAATGATC-AGGATTAAACCAT-AGGTTAAAAAATG-AA
1 GATT-AAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGA-GTCAGAAAATGAAA
* * *
3261169 ATTAACCGA
63 ATGATCAGA
* * ** *
3261178 GATTAAATCACGAGTCAGAAAATGAAAATGATCG-GTATTAAATCACAAG-CTAGAGAAATAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTC-AGA-AAATGAAA
3261241 ATGATCA-A
63 ATGATCAGA
* * ** * * *
3261249 AATTAAATCACGAGTCAAAAAATGAAAACCATCGAGATTAAAACCACGAGTTAGAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATT-AAATCATGAGTCAGAAAATGAAAAT
*
3261314 GATAATGAAAATTATCAA
65 GATCA-G----------A
* * * * * * * * *
3261332 AATTAAATTACTAGTCAGAAAATGAAAATGACCAAAATTAAAGTACA--AGTTAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAA-T-CATGAGTCAGAAAATGAAAA
* *
3261395 TGA-CTGG
64 TGATCAGA
* * * * * * * ** * * * * *
3261402 GACT-AACCCCTTAATGAGAAAATGAAAACCG-CCAAGATTAAACCACGAGTCAAAAAAT-AAAA
1 GATTAAATCAC-GAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
* *
3261464 GTGAT-TGG
64 -TGATCAGA
* * * * * ** *
3261472 GATTAAA-CGATGAGTCAAAAAATGAAAAAAGA-CCAGGATTATACCACAAGTCAAAAAATGAAA
1 GATTAAATC-ACGAGTCAAAAAAT-AAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAA
**
3261535 ACAATC-GA
63 ATGATCAGA
* ** * * * * *
3261543 GATTAAATCACGAGTCAAAAAATAAAAATCAAAGGGATCAAA-CAACGCGTCAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATGAAAAT
3261607 GA-CAGA
65 GATCAGA
* ** * ** * * ** *
3261613 GATTAAAGCAAAAGTCAAAAAATGTAAAACAATGGGGATT-AATCCACAAGTTA-AAAAGTGAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAAT-CATGAGTCAGAAAA-TGAAA
*
3261676 ATAAT-AGA
63 ATGATCAGA
* * * * *
3261684 GATTAAACCACAAGTC-AAAAATAAAAACGATCG-GTATTAAATCATGAGTCAAAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGA-AAATGAAAA
*
3261747 TAATCA-A
64 TGATCAGA
* * * * * * *
3261754 AATCAAATCATGGGTCAAAAAATGAAAGTGA-CTAAGATTAAA-CAACT-AGTCA-AGAAATGAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATC-A-TGAGTCAGA-AAATGAA
**
3261815 ACCGATCAGA
62 AATGATCAGA
* * ** * * * * *
3261825 -ATTAAATCACTAGTCAAAAAATAAAAATAATTTAAATTAAATCATGAGTTTA-AAACTAAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAG-TCAGAAAATGAAAAT
* *
3261888 AAGCAG-
65 GATCAGA
* * * * * *
3261894 GATTAAACCATGAGTCAAAAAATTAAAACGATAC-AGATTAAACCATGAGTTAGAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGAT-CGAGATTAAATCATGAGTCAGAAAATGAAAAT
**
3261958 GA-CTTA
65 GATCAGA
* * * * * * *
3261964 GATGAAACCACTAGTCAGAAAATGAAAAATGA-CCAGGATTAAA-CTATGAGTCAAAAAATGAAG
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGA-GATTAAATC-ATGAGTCAGAAAATGAAA
** *
3262027 ACAATGAG-
63 ATGATCAGA
* * * * * * *
3262035 GATTAAACCATGAGTCAGAGAAATAAAAAAGA-CTAGAATTAAATCACGAGTGAGAAAATGAAAA
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
**
3262099 TGATGGGA
64 TGATCAGA
** * * * * * * *
3262107 -ATTAAA-CTATTAGTCAGAAAATGAAAATGATTGGGACTAAATCATGAGTCAAAAAATGAAAAC
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3262170 GA-CCGA
65 GATCAGA
* * * * * * * * *
3262176 GATTAAACCATGGGTCAGAAAATGAAAACGATCAAGA-TAAACCATG-GGCTAGAAAATGAAAA-
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAATGAAAAT
* * **
3262238 CAACTTA
65 GATCAGA
* ** * ** * * *
3262245 GATTAAATCACGAGTTAAAAAATGGAAACGATC-AGTATTAAATCACAAGCCAGAGAATTAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGA-AAATGAAAA
*
3262309 TGAT-TGA
64 TGATCAGA
* * * * * * * * *
3262316 AATTAAATCATGAGTTAGAAAATGAAAATGATCAAGATTAGACCATGAGTCAGAAAACAAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAG------AAAATG
*
3262381 ATAATGAAAATTATCA-A
60 AAAATG---A-T--CAGA
* * * * * * * * * * *
3262398 AATTAAATTATGAGTCAGAAAATGAAAATGTTC-AGGATCAAAACGTGAGTTAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
* *
3262462 CACCA-A
65 GATCAGA
* * * * * * * * * *
3262468 AATTAAAGCACGAGTTAGAAAATGATAACGA-CTAGGA-CAGAACTC-TGAGTGAGAAAAT-AAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTA-AA-TCATGAGTCAGAAAATGAAA
* *
3262529 ATCCACCAG-
63 AT-GATCAGA
* * * * * * * *
3262538 GATTAAACCATGAGTCAAAAAATGAAAGTGATAGGGATTAAATAATGAGTCAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
* *
3262603 A-CTGG
66 ATCAGA
* * ** *
3262608 GATTAAATCACGAGTCAAAAAATAAAAA-GAT-AATGCATTGAAA-AATGA-AAACGATAGGGAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-G-ATT-AAATCATGAGTCA-GA-A--AAT
* * *
3262669 TAAAGCACGAGTCAAAA
59 GAAA--ATGA-TC-AGA
* * * * * * *
3262686 AATGTAAAACGTCGGGGCTTAAACCTAAGTCAAAACAAGAAAATGACCAAGATTAAATCATGAGT
1 GAT-TAAATC-AC-GAG--T----C-AA---AAAA-TA-AAAATGATCGAGATTAAATCATGAGT
* **
3262751 CAAAAAATGAAAATGATTGGA
51 CAGAAAATGAAAATGATCAGA
* * * * * * * *
3262772 -ATTAAACCACAAGTC-AAAAATGACAATGACCG-GCATTAAATGACGAGTCA-AAGGAATAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAA--AATGAAA
*
3262833 ATGACTTA-A
63 ATGA-TCAGA
* * * * *
3262842 -ATCAAATAACGAGTCTAGAAAATAAAAATGATC-AGGATTAAACCACT-AGT-AAAGAAATGAA
1 GATTAAATCACGAGTC-AAAAAATAAAAATGATCGA-GATTAAATCA-TGAGTCAGA-AAATGAA
3262903 AATGATCAGA
62 AATGATCAGA
* * * * * * * * * *
3262913 -ATTAAATCATGAGTTAGAAAATAAAAATGACCAAAATTAAATTACGAGTCTA-AAACTAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAATGAAAAT
3262976 GATC-GA
65 GATCAGA
* * * * * * * *
3262982 GATTAAACCACGAGTAAAAAAATTAAAACGATAGGGATTAAACCATGAGTCA-AAGAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAA-AATGAAAAT
*
3263046 GACCA-A
65 GATCAGA
* ** * * * * *
3263052 GATGAAGCCACCAGTCAAAAAATGAAAAACGATC-AGGATTAAACCACGAGTCAGAAAATGAAGA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
* **
3263116 TAATGGGA
64 TGATCAGA
* * * * * * * * **
3263124 -ACTAAACCATGAGTCGGAGAAATAAAAATGACCAAAATTAAATCACAAGTCAGAAAATGAAAAT
1 GATTAAATCACGAGTC-AAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
**
3263188 -AGTGGGA
65 GA-TCAGA
* * * * * *
3263195 -ATTAAACCATGAGTCAAAAAATAAAAACGA-CTGGGATTAAACCATGAGTCAGAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAAT
**
3263258 GA-CCTA
65 GATCAGA
* * * * * * *
3263264 GATTAAATCACGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGGGTTAGAAAATTAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
* *
3263329 A-CCGG
66 ATCAGA
* * * * * *
3263334 GATTAAA-C-CGTAGGTTAAAAAATGAAAATGACCAAGACTAAATCATGAGTCAAAAAAT-ATAA
1 GATTAAATCACG-A-GTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGA-AA
**
3263396 ATGAT-TTA
63 ATGATCAGA
* * * * * *
3263404 TATTAAATCACAAGCCAAAGAAATAAAAATGATCAAAATTAAATCACGAGTCAGAAAATGAAAAT
1 GATTAAATCACGAGTCAAA-AAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
3263469 GATC-GA
65 GATCAGA
* * * * * * * *
3263475 GATTAAACCACGAGTCAGAAAACAAAAATGATAATGAAAATTATCAAAATAAAATTATGAATTAG
1 GATTAAATCACGAGT-------CAAAAA--AT-A--AAAATGATCGAGATTAAATCATGAGTCAG
* *
3263540 AAAATGAAAAGGATC-CA
54 AAAATGAAAATGATCAGA
* * * * * * * *
3263557 GATTAAAACACGAGTTAAAAAATGAAAACGA-CCAGAATTAAAGCACGAGTCAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
*
3263621 GAT-AGG
65 GATCAGA
* * * * ** * * * * * *
3263627 GACTAAA-CCCTGAGTGAAAAAATGAAAACCA-CCAGGATTAAACCACGAGTTAGAAAATTAAAG
1 GATTAAATCAC-GAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
*
3263690 CGATCA-A
64 TGATCAGA
* * ** * * * * *
3263697 GATGAAATGATAAGTCAGAAAATGAAAAATGATCGGGATTATACCATGAGTCAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* *
3263762 GA-CTGG
65 GATCAGA
* * *
3263768 GATTAAATCATGAGTCAAAAAATAAAAATGA-CAGGGA-TAAATAATGCA-TCAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATG-AGTCAGAAAATGAAAA
3263830 TGA-CA-A
64 TGATCAGA
* *** * * * * * **
3263836 GGATTAAAGCACGAGTTGGAAAATGTAAAA-CAACAAAGATTAAACCACAAGTCA-AAAAGTG-A
1 -GATTAAATCACGAGTCAAAAAAT-AAAAATGATC-GAGATTAAATCATGAGTCAGAAAA-TGAA
*
3263898 AATGA-CCGA
62 AATGATCAGA
* * * * * ** * * * ** *
3263907 GATTAAACCATGAGTTAGAAAATGAAAACAACCGAAATTAAATGACAAGTCAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3263972 A-CTG-
66 ATCAGA
* * * *
3263976 GTATTAAATCACGAGTCAAAGAAATAAAAATGATAG-GAATCAAATCACGAGTTAGAAAATGAAA
1 G-ATTAAATCACGAGTCAAA-AAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAA
* *
3264040 ATAACCAG-
63 ATGATCAGA
* * ** * * * * * *
3264048 GATTAAACCACTAGTCAGGAAATGAAAATGATCTAAATTAAATCACGAGTCAAAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3264113 ACCA-A
66 ATCAGA
* * * * * * *
3264118 AAATAAATCACGAG-CTTAAAACTAAAAACGATC-AGGATTAAATCATGAGTCAAAAAATTAAAA
1 GATTAAATCACGAGTC-AAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
* *
3264181 GGAT-AGG
64 TGATCAGA
* * * * * * * * *
3264188 GATTAAACCATGAGTCAGAGAATGAAAATGATGGAGATGAAACCACT-AGTCAAAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCA-TGAGTCAGAAAATG-AAAA
** *
3264252 CAAT-TGA
64 TGATCAGA
* * * * * * * * * *
3264259 GATTAAATCATGAGTCAGAAAATGAAGA-CAACGGGGATTAAACCACGAGTCAGAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGA-AAATGAAAA
*
3264323 TGACCA-A
64 TGATCAGA
* * * * * *
3264330 AATTAAATCATGAGTTAAAAAATGAAAATGAT-GGGAATTAAACCATGAGTCAGAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
*
3264394 GAT-AGG
65 GATCAGA
* * * ** * *
3264400 GATTAAATCATGAGTCAAAAAATAAAAACT-ATCAAGATTAAACCACAAGTCAAAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAA-TGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
**
3264464 GA-CCCA
65 GATCAGA
* * * * * * * *
3264470 TATTAAATCATGAGTCAGAAAATGAAAATGATC-AGAATTAAACCATGGGTTAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAAT
*
3264534 AATC-GA
65 GATCAGA
* * * * * *
3264540 GATTAAACCATG-GTTTAGAAAATAAAAATGA-CTGAGATTAAATTATGAGTTAGAAAATGAAAA
1 GATTAAATCACGAG-TCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAA
3264603 TGATCAG-
64 TGATCAGA
* * * * * *
3264610 TATTAAATCACAAG-CTAGAGAAATAAAAATGATCGAAATTAAGTCATGAGTCAAAAAATGAAAA
1 GATTAAATCACGAGTC-A-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
* *
3264674 TAAT-TGA
64 TGATCAGA
* * * * * * *
3264681 GATTAAACCATGAGTAAGAAAACAAAAATGATAATGAAAATTATCAAAATTAAATTATGAGTCAA
1 GATTAAATCACGAGT-------CAAAAA--AT-A--AAAATGATCGAGATTAAATCATGAGTCAG
*
3264746 AAAATGAAAATGATCATA
54 AAAATGAAAATGATCAGA
* ** * * * * *
3264764 -ATTAAAGCACGAGTCAGAAAACCAAAAATGA-CTAAGACTAAAGCCT-AGGTGAGAAAATGAAA
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATC-GAGATTAAATCATGA-GTCAGAAAATGAAA
*
3264826 ACT-ACCA-A
63 A-TGATCAGA
* * * ** * * **
3264834 GATTAAACCATGAGTCAGAAAATAAAAGCGATCAAGATTAAATGACAAGTCA-AACAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAA-AATG-AAAA
*
3264898 TGACCAG-
64 TGATCAGA
* * * * * * *
3264905 GATTATACCATGAGTCAAAAAATGAAAATGACCGGGATTAAATCATGAGTCA-AAAAAGAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAAAT
* *
3264969 GA-CGGG
65 GATCAGA
* * * * ** *
3264975 GATTAAAGCATGAGTCAAAAAAGTTAAACAA-GA-AG-GATTAAACCACAAGTTA-AAAAGTGAA
1 GATTAAATCACGAGTCAAAAAA--TAAA-AATGATCGAGATTAAATCATGAGTCAGAAAA-TGAA
*
3265036 AATGATTA-A
62 AATGATCAGA
* * * * * * * * * *
3265045 GATCAAACCATGAGTCAGAGAATGAAAATGATTGAAATTAAATGAAGAGTCA-AAAATTGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAA-TGAAAAT
**
3265109 GA-CTTA
65 GATCAGA
* * * * *
3265115 CATTAAATCACAAGTCAAAGAAATAAAAGTGATC-AGAATCAAATCATAAGTCAGAAAATGAAAA
1 GATTAAATCACGAGTCAAA-AAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
*
3265179 TGA-CTGA
64 TGATCAGA
* * * * * * * *
3265186 GATTAAACCACTACTCAAGAAATGAAAATGATCGAAATTAAATCATAAGTCAGAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3265251 AT-TGA
66 ATCAGA
* * * * * * ** *
3265256 AATTAAATCACAAGTTAAAAAAATAAAAATGACCAAAATTAAATCACAAGTCTA-AAACTGAAAA
1 GATTAAATCACGAG-TCAAAAAATAAAAATGATCGAGATTAAATCATGAGTC-AGAAAATGAAAA
* *
3265320 CGA-CAAA
64 TGATCAGA
* * * * * ** * * * * *
3265327 GATTAAACCACGTGTTAGAAAATTAAAACAATAGGGTTTAAACCATGAGTCA-AAGAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAA-AATGAAAAT
3265391 GAAT-A-A
65 G-ATCAGA
* * * * * * * * * * *
3265397 GATAAAACCACCAGTCAGAGAATGAAAAACGATCGGGATTAAACCACGAGTCAAAAAATGAAGA-
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* *
3265461 CAACATG-
65 GATCA-GA
* * * ** *
3265468 GATTAAAGT-ATGAGTCAGAGAAATAAAAATGA-CCAGAATTAAATCACAAGTCAGAAAATAAAA
1 GATTAAA-TCACGAGTCA-AAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAA
** **
3265531 ACAATGGGA
63 ATGATCAGA
* * *
3265540 -ATTAAACCACGAGTCAAAAAATGAAAAA--AACTAAGATTAAATCATGAGTCAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAA
3265602 TGATC-G-
64 TGATCAGA
* * * * ** *
3265608 GTATTAAATCACAAGTCAGAGAAATAAAAATGATCAAAATTAAATCACAAGTTAGAAAATGAAAA
1 G-ATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
3265673 TGATC-GA
64 TGATCAGA
* * * *
3265680 AATTAAA-CTATGAGTCAAAAAATGGAAATGATAATGACAATTACTG-GAATTAAATTACGAGTC
1 GATTAAATC-ACGAGTCAAAAAAT---AA--A-AATG---A-T-C-GAG-ATTAAATCATGAGTC
*
3265743 AAAAAATG-AAATGATC-GA
52 AGAAAATGAAAATGATCAGA
* * * * * * * * *
3265761 GATTAAAAT-GCGAGT-TAAAAATGAAAACGA-CTAAAATTAAAGCACGAGTCAGAAAATG-ACA
1 GATT-AAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAA
**
3265822 TGACTTTGA
64 TGA-TCAGA
* * * * * ** * * * *
3265831 GATTAAATC-CTTAAATGAGAAAATGAAAACCACCAAGACTTAAAACATGAGTTCAAAAAAATGA
1 GATTAAATCAC--GAGTCAAAAAATAAAAATGATCGAGA-TTAAATCATGAG-TC-AGAAAATGA
3265895 AAAGTGAACTC-GA
61 AAA-TG-A-TCAGA
* * * * * * * * * *
3265908 GCTTAAATGATGAGGCTCAGAAAATGAAAATGATTGGGATTATA-CGA-CAGTCAAAAAATGAAA
1 GATTAAATCACGA-G-TCAAAAAATAAAAATGATCGAGATTAAATC-ATGAGTCAGAAAATGAAA
** * *
3265971 AACAACTGA
63 ATGATCAGA
* ** * * * *
3265980 GATT-AATCAC-A-AC-CTAAA-AAAAATGAACAAAAGATTAAA-CAAT-CGTCCAAAAAAATGA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC--GAGATTAAATC-ATGAGT-C-AGAAAATGA
*
3266038 AAATGA-CAGG
61 AAATGATCAGA
* * * ** ** * * *
3266048 GACTAAAAGCCACTACCGTCAAAAAAATGTAAAAACAATAAAGGATTAAA-CTATAAGTAAAAAA
1 GA-TTAAA-TCACGA--GTC-AAAAAA--TAAAAATGATCGA-GATTAAATC-ATGAGTCAGAAA
*
3266112 ATGACAAGTGGAT-AGA
57 ATGA-AAAT-GATCAGA
* * * * * *
3266128 GATTAAAACCACGAGTCAAAAAATTAAAACA-GA-CTAGAATT-AATGATGGATTCAAAAAAAGA
1 GATT-AAATCACGAGTCAAAAAA-TAAAA-ATGATCGAG-ATTAAATCAT-GAGTCAGAAAATGA
* *
3266190 AAAT-AACCG-
61 AAATGATCAGA
* * * * * *
3266199 GCATTAAATCACGAGTCAAAAGAAATAAAAATGACCAAAATCAAATCACGAAGTCAAAAAAATGA
1 G-ATTAAATCACGAGTC-AAA-AAATAAAAATGATCGAGATTAAATCATG-AGTC-AGAAAATGA
*
3266264 AAATGACCA-A
61 AAATGATCAGA
* * * * * * * * *
3266274 GACTAAACCACTAGT-AAGAAATAAACCA--ACCAAAAATTAAATCAT--GTCAAAAAAT-AAAA
1 GATTAAATCACGAGTCAAAAAATAAA-AATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAA
*
3266333 TGA-CTGA
64 TGATCAGA
* * * * * * *
3266340 AATTAAATCATGAGTCTAAAACTAAAAATGA-CTAGGATTAAA-CTATTAGTCAAAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATC-ATGAGTCAGAAAATGAAAA
* *
3266403 CGAT-AGG
64 TGATCAGA
* * * * * * *
3266410 GATTAAACCACAAGTTAAAAAATGAAAATGA-CTAAGATGAAA-CTACT-AGTCAAAAAATGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATC-A-TGAGTCAGAAAATG-AA
3266472 AATGATCAG-
62 AATGATCAGA
* * * * * * * * * ** *
3266481 GGTTAAACCACAAGTCAAAATATGAAGA-CAACGAGGATTAAACCACAAGTCAGAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGA-AAATGAAAA
*
3266545 TGACCAGA
64 TGATCAGA
* * * * * * * * *
3266553 -ATTAAATTACGAATCAAAAAATGAAAATGA-CCAGGATCAAAACATGAGTTAAAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
*
3266616 CA-CTAG-
65 GATC-AGA
* * *
3266622 GATTAAACCATGAGTCAAAAAATGAAAGCAAT--TAG-GATTAAA-CAATGAGTCCA-AAAATGA
1 GATTAAATCACGAGTCAAAAAAT-AAA--AATGATCGAGATTAAATC-ATGAGT-CAGAAAATG-
*
3266682 AAAATGAT-AGG
60 AAAATGATCAGA
* * * * * * * *
3266693 GATTATACCATGAGTCAAAAAA-AGAAAATGATCGAGATTAAAACAGGAGTTAAAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATA-AAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3266757 -AT-AGG
65 GATCAGA
* * * * * ** * *
3266762 GATTAAA-CAAC-ACATCAAAAAATGAAAATGATAGGGATTAAAGCACAAGCCAAAAAATGTAAA
1 GATTAAATC-ACGA-GTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATG-AAA
** * *
3266825 ACAAT-GGG
63 ATGATCAGA
* * ** * * * *
3266833 GATTAAA-CAGCAAGTCAAAAATTGGAAATGACCGAGATTAAACCATGAGTCAAAAAATGAAAAA
1 GATTAAATCA-CGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3266897 GATCATA
65 GATCAGA
** * * * *
3266904 -ATTAAAAGATGAGTCAAAAAATAAAAAT-AACTGACATTAAATCATGAGTCA-ATGAAATAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGA--AAATGAAA
*
3266966 ATGAT-TGA
63 ATGATCAGA
* * * * *
3266974 AATCAAATCACGAGTC--AGAATCAAAATGATCGGGATTAAA-CGACT-AGTCAAGAAACA--AA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATC-A-TGAGTC-AGAAA-ATGAA
3267033 AATGATCAGA
62 AATGATCAGA
* * * * * * *
3267043 -ATTAAATTACAAGTCAAAAAATAAAAATGATCGAAATTAAATCATAAGTTTA-AAACTAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAG-TCAGAAAATGAAAAT
3267106 GATC-GA
65 GATCAGA
* * * * * * **
3267112 GATTAAACCACAAGTCAAAAAATCAAAATGA-CAAGGATTAAACCATGAGTCAGAGAACAAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAAT
*
3267176 GA-CTGA
65 GATCAGA
* ** * * * * *
3267182 GATGAAGCCACCAATCAAAAAATGAAAAATGATCGGGATTAAAGCATGAGTCAGAAAATGAAGA-
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
* * *
3267246 CAACAGG
65 GATCAGA
* * * * * *
3267253 GACTAAACCATGACTCAGAGAAATAAAAATGA-CCAGAATTAAATCATGAGTCAGAAAATGAAAA
1 GATTAAATCACGAGTCA-AAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGAAAATGAAAA
* **
3267317 CGATGGGA
64 TGATCAGA
* * * * * * * *
3267325 -ATTAAA-CTACAAGTCAGAAAATGAAAATGACCAAGATTAAATCACGAGTCAAAAAATAAAAAT
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3267388 GAT-TGA
65 GATCAGA
* * * * * *
3267394 GATTAAACCTCGAGTCAGAAAATAAAAATGACTTG-GATTAAATCACGAGTTAGAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGA-TCGAGATTAAATCATGAGTCAGAAAATGAAAAT
3267458 GA--ATG-
65 GATCA-GA
* * * * * * *
3267463 GATTAAACCATGGGTTAAAAAATAAAAACGATCAAGATTAAATCATGAGTCAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3267528 ATC-G-
66 ATCAGA
* * * * * * * * *
3267532 GTATGAAATCACAAGCCAGAGAAATAAAAATGATCAAAATTAAATCATAAATCAAAAAATGAAAA
1 G-ATTAAATCACGAGTCA-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAA
**
3267597 CCATC-GA
64 TGATCAGA
* * * * * * * * *
3267604 GATTAAACCACGAGTTAGAAAATGAAAATGAT--A-ATGAAA--ATTA-CCAGAATTAAATTACA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAG-A--AAATGAAA
*
3267663 A--ATCAAAA
63 ATGATC-AGA
* * * * * * * * *
3267671 AATGAAAATGACGAAAATTAAAGCACAAGTTAGAAAATGAAAACGACTGGGACTAAA-CCTGAAT
1 GAT-TAAATCACG--AGTCAAA--A-AA--TA-AAAATG--ATCGA----GATTAAATCATGAGT
* ** *
3267735 GAGAAAATGAAAACCACCAG-
51 CAGAAAATGAAAATGATCAGA
* * * ** * * *
3267755 GATTAAA-CTATGAGGCAAAAAATGAAAGCGATC-AGGATTAAATGATGAGTAATAAAATGAAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCATGAGTCAGAAAATGAAAA
** *
3267818 ACAACTAG-
64 TGATC-AGA
* * * * ** * * * *
3267826 GATTATACCACAAGTCAAAAAATGAAAACAACCGAGATTAAATCATGAATCAAAAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
*
3267891 A-CAGG
66 ATCAGA
* * * * * *
3267896 GATTAAA-CAACGTGTCAAAAAATGAAAATGA-CAGGGATTAAAGCATGAGTAAGAAAATATAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAAT-GAAA
** *
3267959 ACAAT-GGA
63 ATGATCAGA
* * * * * ** * *
3267967 GATTAAACCACAAGTCAAAAAGTGAAAAA-GATAGAGATTAAACCACAAGTCAAAAAATGAAAAG
1 GATTAAATCACGAGTCAAAAAAT-AAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAAT
3268031 GATC-GCA
65 GATCAG-A
* * * * * * * *
3268038 -ATTAAA-CGATGATTCAAAAAGTGATAATGAACG-GCATTAAATCATGAGTCAAAGAAATAAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATCGAG-ATTAAATCATGAGTCAGA-AAATGAAA
*
3268100 ATGAT-TGA
63 ATGATCAGA
* * * * *
3268108 AATTAAATCATGAGTCAAAAAAT-GAAATGATC-AGGATTAAACCACT-AGTTA-ATAAATGAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGA-GATTAAATCA-TGAGTCAGA-AAATGAAA
** **
3268169 CCGATTGGA
63 ATGATCAGA
* * * * *
3268178 -ATTAAATCATGAGTTAGAAAATAAAAATGA-CTGAAATTAAATCATGAGTCTA-AAACTGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTC-AGAAAATGAAAA
*
3268240 TGAT-AGG
64 TGATCAGA
* * * * * * *
3268247 GATTAAACCATGAGTCAGAAAATAAAAACGA-CTGAGATGAAACCACT-AGTTAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCA-TGAGTCAGAAAATG-AAA
3268310 ATGATC-GA
63 ATGATCAGA
* * * * * *
3268318 GATTAAA-CTACGAGTCAAAAAATGAAGA-CAACAGGGATTAAA-CAATGAGTCAGAGAAATAAA
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGATC-GAGATTAAATC-ATGAGTCAGA-AAATGAA
3268380 AATGATCAGA
62 AATGATCAGA
* * * * *
3268390 -ATTAAATCATGAGT-AAGAAAATGAAAATGAT-GGGAATTAAATCACGAGTCAAAAAAATGAAA
1 GATTAAATCACGAGTCAA-AAAATAAAAATGATCGAG-ATTAAATCATGAGTC-AGAAAATGAAA
*
3268452 ACGA-CTAG-
63 ATGATC-AGA
* * * *
3268460 GATTAAATCACGAGTCAAAAAATGAAAACGA-CTGAGATTAAAACATGGGTCAGAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATAAAAATGATC-GAGATTAAATCATGAGTCAGAAAATGAAAAT
*
3268524 GACCA-A
65 GATCAGA
* * * * * * * *
3268530 GATTAAACCATGGGTTAGAAAATAAAAATGATTGAGATTAAATCATGAGTCAAAAAATGAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
3268595 ATC-G-
66 ATCAGA
** * * *
3268599 GTATTAAATCAC-AAACTAGAGAAATAAAAATGATCAAAATTAAATCATGAGTCAGAAAATGAAA
1 G-ATTAAATCACGAGTC-A-AAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAA
3268663 ATGATC-GA
63 ATGATCAGA
*
3268671 GATTAAA-CAACGAGTCAAAAAATGAAAATGAT
1 GATTAAATC-ACGAGTCAAAAAATAAAAATGAT
3268703 AATGAAAATT
Statistics
Matches: 28211, Mismatches: 7493, Indels: 5858
0.68 0.18 0.14
Matches are distributed among these distances:
57 18 0.00
58 4 0.00
59 20 0.00
60 7 0.00
61 11 0.00
62 128 0.00
63 104 0.00
64 106 0.00
65 95 0.00
66 220 0.01
67 320 0.01
68 514 0.02
69 2588 0.09
70 11875 0.42
71 8347 0.30
72 881 0.03
73 206 0.01
74 150 0.01
75 137 0.00
76 296 0.01
77 168 0.01
78 87 0.00
79 90 0.00
80 82 0.00
81 203 0.01
82 1029 0.04
83 123 0.00
84 57 0.00
85 75 0.00
86 57 0.00
87 63 0.00
88 36 0.00
89 25 0.00
90 39 0.00
91 20 0.00
92 6 0.00
93 18 0.00
94 4 0.00
95 2 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.20
Consensus pattern (71 bp):
GATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTCAGAAAATGAAAATG
ATCAGA
Found at i:3230190 original size:71 final size:70
Alignment explanation
Indices: 3230106--3230242 Score: 195
Period size: 71 Copynumber: 1.9 Consensus size: 70
3230096 AACGACTGAG
* *
3230106 ATTAAATCATGAGTGAAAAAATGAAAATGATC-AGTATTAAATCACAAGCCAAAAAAATAAAAAT
1 ATTAAATCATGAGTCAAAAAATGAAAATGATCAAG-ATTAAACCACAAGCC-AAAAAATAAAAAT
3230170 GATCAAA
64 GATCAAA
* * * *
3230177 ATTAAATCATGAGTCAGAAAATGAAAATGATCAAGATTAAACCACGAGTCAAAAAATGAAAATGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATCAAGATTAAACCACAAGCCAAAAAATAAAAATGA
3230242 T
66 T
3230243 AATTAAAATT
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
70 15 0.25
71 42 0.71
72 2 0.03
ACGTcount: A:0.55, C:0.10, G:0.13, T:0.21
Consensus pattern (70 bp):
ATTAAATCATGAGTCAAAAAATGAAAATGATCAAGATTAAACCACAAGCCAAAAAATAAAAATGA
TCAAA
Found at i:3230214 original size:106 final size:105
Alignment explanation
Indices: 3230000--3230242 Score: 276
Period size: 106 Copynumber: 2.3 Consensus size: 105
3229990 AAACAACTCG
* *** * * *
3230000 GATTAAATCATGAGTCAAAAAATAAAAATGATCGAGATTAAACCATGGGTCAGAAAATGAAAACG
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGAGATTAAACCACAAGCCAAAAAATAAAAACG
* * * *
3230065 ATAGAGATTAAATCATGGGTTAGAAAATGAAAACGACTGA
66 ATAGAAATTAAATCATGAGTCAGAAAATGAAAACGACTAA
* *
3230105 GATTAAATCATGAGTGAAAAAATGAAAATGATC-AGTATTAAATCACAAGCCAAAAAAATAAAAA
1 GATTAAATCATGAGTCAAAAAATGAAAATGATCGAG-ATTAAACCACAAGCC-AAAAAATAAAAA
* *
3230169 TGATCA-AAATTAAATCATGAGTCAGAAAATGAAAATGA-TCAA
64 CGAT-AGAAATTAAATCATGAGTCAGAAAATGAAAACGACT-AA
* *
3230211 GATTAAACCACGAGTCAAAAAATGAAAATGAT
1 GATTAAATCATGAGTCAAAAAATGAAAATGAT
3230243 AATTAAAATT
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
104 2 0.02
105 42 0.36
106 71 0.61
107 1 0.01
ACGTcount: A:0.53, C:0.10, G:0.16, T:0.21
Consensus pattern (105 bp):
GATTAAATCATGAGTCAAAAAATGAAAATGATCGAGATTAAACCACAAGCCAAAAAATAAAAACG
ATAGAAATTAAATCATGAGTCAGAAAATGAAAACGACTAA
Found at i:3230320 original size:258 final size:257
Alignment explanation
Indices: 3230001--3230499 Score: 572
Period size: 258 Copynumber: 1.9 Consensus size: 257
3229991 AACAACTCGG
* *
3230001 ATTAAATCATGAGTCAAAAAATAAAAATGATCGAGATTAAACCATGGGTCAGAAAATGAAAACGA
1 ATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAA-CATGGGTCAAAAAATGAAAACGA
* * * * * * * * *
3230066 TAGAGATTAAATCATGGGTTAGAAAATGAAAACGACTGAGATTAAATCATGAGTGAAAAAATGAA
65 TAGAAATTAAAGCATGAGTCAAAAAATGAAAACAACTGAGACTAAACCATAAGTGAAAAAATGAA
** * * *
3230131 AATGATCAGTATTAAATCACAAGCCAAAAAAATAAAAATGATCAAAATTAAATC-ATGAGTCAGA
130 AACCACCAGGATTAAATCACAAGCC-AAAAAATAAAAACGATCAAAATTAAA-CAATGAGTCAGA
* *
3230195 AAATG-AAAATGATCAAGATTAAACCACGAGTCAAAAAATGAAAATGATAATTAAAATTATTGAA
193 AAATGAAAAATGATCAAGACTAAACCACAAGTCAAAAAATGAAAATGATAATTAAAATTATTGAA
* * * * * * *
3230259 ATTAAATTACGAGTCAGAAAATGAAAATGATTGGGATTAAA-ATGAGAGTTAAAAAATGAAAATG
1 ATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAACATG-G-GTCAAAAAATGAAAACG
* * * * *
3230323 ATCGAAATTAAAGCATGAGTCAAAAAATGAAAACAATTGGGACTAAACCTTAAGTGAGAAAATGA
64 ATAGAAATTAAAGCATGAGTCAAAAAATGAAAACAACTGAGACTAAACCATAAGTGAAAAAATGA
* * * * **
3230388 AAACCACCAGGATTAAATCACAAGTCAGAAAATGAAAGCGATCAGGATTAAACAATGAGTCAGAA
129 AAACCACCAGGATTAAATCACAAGCCAAAAAATAAAAACGATCAAAATTAAACAATGAGTCAGAA
** * *
3230453 AATGAAAAATGATCGGGACTATACCACAAGTCAATAAATGAAAATGA
194 AATGAAAAATGATCAAGACTAAACCACAAGTCAAAAAATGAAAATGA
3230500 CCAAGATTAA
Statistics
Matches: 197, Mismatches: 40, Indels: 8
0.80 0.16 0.03
Matches are distributed among these distances:
256 4 0.02
257 36 0.18
258 157 0.80
ACGTcount: A:0.52, C:0.10, G:0.17, T:0.21
Consensus pattern (257 bp):
ATTAAATCACGAGTCAAAAAATAAAAATGATCGAGATTAAACATGGGTCAAAAAATGAAAACGAT
AGAAATTAAAGCATGAGTCAAAAAATGAAAACAACTGAGACTAAACCATAAGTGAAAAAATGAAA
ACCACCAGGATTAAATCACAAGCCAAAAAATAAAAACGATCAAAATTAAACAATGAGTCAGAAAA
TGAAAAATGATCAAGACTAAACCACAAGTCAAAAAATGAAAATGATAATTAAAATTATTGAA
Found at i:3230561 original size:141 final size:141
Alignment explanation
Indices: 3230416--3230675 Score: 312
Period size: 141 Copynumber: 1.8 Consensus size: 141
3230406 CACAAGTCAG
* ** * *
3230416 AAAATGAAAGCGATCA-GGATTAAA-CA-ATGAGTCAGAAAATGAAAAATGATCGGGACTATACC
1 AAAATGAAAACGAT-AGGGATTAAAGCACA--AGTCAGAAAATGAAAAACAATAGGGACTAAACC
* *
3230478 ACAAGTCAATAAA-TGAAAATGACCAAGATTAAATCATGAGTCAAAAAATAAAAATGACAAGGAT
63 ACAAGTCAA-AAAGGGAAAATGACCAAGATTAAACCATGAGTCAAAAAATAAAAATGACAAGGAT
3230542 TAAACAATGCATTGA
127 TAAACAATGCATTGA
* * * * *
3230557 AAAATTAAAACGATAGGGATTAAAGCACAAGTTAGAAAATGTAAAACAATAGGGATTAAACCATA
1 AAAATGAAAACGATAGGGATTAAAGCACAAGTCAGAAAATGAAAAACAATAGGGACTAAACCACA
* * * *
3230622 AGTCAAAAAGGGAAAATGACCGAGATTAAACCATGAGTTAAAAAGTGAAAATGA
66 AGTCAAAAAGGGAAAATGACCAAGATTAAACCATGAGTCAAAAAATAAAAATGA
3230676 TCGAAATTAA
Statistics
Matches: 99, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
140 4 0.04
141 92 0.93
142 2 0.02
143 1 0.01
ACGTcount: A:0.52, C:0.11, G:0.18, T:0.19
Consensus pattern (141 bp):
AAAATGAAAACGATAGGGATTAAAGCACAAGTCAGAAAATGAAAAACAATAGGGACTAAACCACA
AGTCAAAAAGGGAAAATGACCAAGATTAAACCATGAGTCAAAAAATAAAAATGACAAGGATTAAA
CAATGCATTGA
Found at i:3230701 original size:71 final size:71
Alignment explanation
Indices: 3230633--3230816 Score: 210
Period size: 71 Copynumber: 2.6 Consensus size: 71
3230623 GTCAAAAAGG
* * * * * *
3230633 GAAAATGACCGAGATTAAACCATGAGTTAAA-AAGTGAAAATGATCGAAATTAAATAACGAATCA
1 GAAAATGACCGAGATTAAACCACGAGTCAAAGAAATAAAAATGATCGAAATCAAATAACGAACCA
3230697 AAAAAT
66 AAAAAT
* * * * * * *
3230703 AAAAATGATCGACATTAAATCACGAGTCAAAGAAATAAAAATGATCTAAATCAAATCACGAGCCA
1 GAAAATGACCGAGATTAAACCACGAGTCAAAGAAATAAAAATGATCGAAATCAAATAACGAACCA
*
3230768 GAAAAT
66 AAAAAT
* *
3230774 GAAAATGACCGAGATTAAACCACTAGTC-AAGAAACAAAAATGA
1 GAAAATGACCGAGATTAAACCACGAGTCAAAGAAATAAAAATGA
3230817 CCAAAATTAA
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
70 39 0.42
71 54 0.58
ACGTcount: A:0.54, C:0.14, G:0.15, T:0.18
Consensus pattern (71 bp):
GAAAATGACCGAGATTAAACCACGAGTCAAAGAAATAAAAATGATCGAAATCAAATAACGAACCA
AAAAAT
Found at i:3230813 original size:106 final size:105
Alignment explanation
Indices: 3230662--3230852 Score: 231
Period size: 106 Copynumber: 1.8 Consensus size: 105
3230652 CCATGAGTTA
* * * * * * *
3230662 AAAAGTGAAAATGATCGAAATTAAATAACGAATCAAAAAATAAAAATGATCGACATTAAATCACG
1 AAAAGTGAAAATGACCGAAATTAAACAACGAATCAAAAAACAAAAATGACCAAAATTAAATCACA
3230727 AGTCAAAGAAATAAAAATGATCTAAATCAAATCACGAGCCAG
66 AGTCAAA-AAAT-AAAATGATCTAAATCAAATCACGAGCCAG
* * * * *
3230769 AAAA-TGAAAATGACCGAGATTAAACCACTAGTCAAGAAACAAAAATGACCAAAATTAAATCACA
1 AAAAGTGAAAATGACCGAAATTAAACAACGAATCAAAAAACAAAAATGACCAAAATTAAATCACA
* *
3230833 AGTTAGAAAATAAAATGATC
66 AGTCAAAAAATAAAATGATC
3230853 AAAGTTAAAT
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
104 9 0.13
105 4 0.06
106 53 0.76
107 4 0.06
ACGTcount: A:0.55, C:0.14, G:0.13, T:0.18
Consensus pattern (105 bp):
AAAAGTGAAAATGACCGAAATTAAACAACGAATCAAAAAACAAAAATGACCAAAATTAAATCACA
AGTCAAAAAATAAAATGATCTAAATCAAATCACGAGCCAG
Found at i:3231047 original size:71 final size:71
Alignment explanation
Indices: 3230964--3231129 Score: 178
Period size: 71 Copynumber: 2.3 Consensus size: 71
3230954 CACCAAGATG
* * * *
3230964 AAACCAGC-AGTCAAAAAATGAAAAATGATTGGGAA-TAAACCATGAGTTAGAAAATGAAGACAA
1 AAACCA-CAAGTCAAAAAATGAAAAATGACT-AGAATTAAACCATGAGTTAGAAAACGAAAACAA
*
3231027 TAGG-GATT
64 T-GGAAATT
* * * *
3231035 GAACCACAAGTCAAAGAAA-GAAAAATGACTAGAATTAAATCGTGAGTTAGAAAACGAAAACGAT
1 AAACCACAAGTCAAA-AAATGAAAAATGACTAGAATTAAACCATGAGTTAGAAAACGAAAACAAT
3231099 GGAAATT
65 GGAAATT
*
3231106 AAACCACAAGTCAGAAAATGAAAA
1 AAACCACAAGTCAAAAAATGAAAA
3231130 CAATCAGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
70 9 0.11
71 67 0.85
72 3 0.04
ACGTcount: A:0.53, C:0.11, G:0.19, T:0.16
Consensus pattern (71 bp):
AAACCACAAGTCAAAAAATGAAAAATGACTAGAATTAAACCATGAGTTAGAAAACGAAAACAATG
GAAATT
Found at i:3231346 original size:36 final size:35
Alignment explanation
Indices: 3231267--3231368 Score: 87
Period size: 36 Copynumber: 2.9 Consensus size: 35
3231257 AACGATCGAG
** * * ***
3231267 ATTAAATCATGAGTCAAAAACTAAAAATGATTGGT
1 ATTAAATCACAAGCCAAAAAATAAAAATGATTAAA
3231302 ATTAAATCACAAGCCAAAGAAATAAAAATGATTAAA
1 ATTAAATCACAAGCCAAA-AAATAAAAATGATTAAA
* * * * *
3231338 ATTGAATCATAAGTCAAAATATGAAAATGAT
1 ATTAAATCACAAGCCAAAAAATAAAAATGAT
3231369 CGAGATTAAA
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
35 26 0.48
36 28 0.52
ACGTcount: A:0.54, C:0.09, G:0.12, T:0.25
Consensus pattern (35 bp):
ATTAAATCACAAGCCAAAAAATAAAAATGATTAAA
Found at i:3231622 original size:141 final size:139
Alignment explanation
Indices: 3231472--3231731 Score: 304
Period size: 141 Copynumber: 1.9 Consensus size: 139
3231462 CATGAGATAG
* * * * * *
3231472 AAAAAGAAAACGATTGGGACTAAACCCTAAGTGAGAAAATGAAAACCACTAGGATTAAACCACCA
1 AAAAAGAAAACGATTAGGACTAAACCATAAGTCAAAAAATAAAAACCACTAGGATTAAACAACCA
* * * *
3231537 GTCAAAAAATGAAAGCGATCGGGATTCAATGATGAGCCAAAAAATGAAAAATGATCGAGATTATA
66 GTCAAAAAATGAAAACAATCGGGATTAAATCATGAGCCAAAAAAT-AAAAATGATCGAGATTATA
3231602 CCATGAGTCA
130 CCATGAGTCA
* * * ** * * *
3231612 AAAAATGAAAACGATTAGGATTAAATCATGAGTCAAAAAATAAAAATGATTGGGATTAAACAACG
1 AAAAA-GAAAACGATTAGGACTAAACCATAAGTCAAAAAATAAAAACCACTAGGATTAAACAACC
* * * *
3231677 GGTCGAAAAATGAAAACAATTGGGATTAAATCATGAGTCAAAAAATAAAAATGAT
65 AGTCAAAAAATGAAAACAATCGGGATTAAATCATGAGCCAAAAAATAAAAATGAT
3231732 GAGTCAAAGA
Statistics
Matches: 97, Mismatches: 22, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
140 14 0.14
141 83 0.86
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.19
Consensus pattern (139 bp):
AAAAAGAAAACGATTAGGACTAAACCATAAGTCAAAAAATAAAAACCACTAGGATTAAACAACCA
GTCAAAAAATGAAAACAATCGGGATTAAATCATGAGCCAAAAAATAAAAATGATCGAGATTATAC
CATGAGTCA
Found at i:3231750 original size:21 final size:21
Alignment explanation
Indices: 3231704--3231751 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
3231694 AATTGGGATT
*
3231704 AAATCATGAGTCAAAAAATAA
1 AAATGATGAGTCAAAAAATAA
* *
3231725 AAATGATGAGTCAAAGAATGA
1 AAATGATGAGTCAAAAAATAA
3231746 AAATGA
1 AAATGA
3231752 CCAATATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.58, C:0.06, G:0.17, T:0.19
Consensus pattern (21 bp):
AAATGATGAGTCAAAAAATAA
Found at i:3232446 original size:20 final size:20
Alignment explanation
Indices: 3232423--3232482 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
3232413 AAAAATGATC
3232423 AAAATTAAATCACGAGTCAA
1 AAAATTAAATCACGAGTCAA
*
3232443 AAAATGAAAAT-A--A-TC--
1 AAAAT-TAAATCACGAGTCAA
*
3232458 AAGATTAAATCACGAGTCAA
1 AAAATTAAATCACGAGTCAA
3232478 AAAAT
1 AAAAT
3232483 GAAAATGACA
Statistics
Matches: 29, Mismatches: 4, Indels: 14
0.62 0.09 0.30
Matches are distributed among these distances:
14 4 0.14
15 5 0.17
17 3 0.10
18 3 0.10
20 10 0.34
21 4 0.14
ACGTcount: A:0.58, C:0.12, G:0.10, T:0.20
Consensus pattern (20 bp):
AAAATTAAATCACGAGTCAA
Found at i:3232510 original size:82 final size:82
Alignment explanation
Indices: 3232414--3232572 Score: 194
Period size: 82 Copynumber: 1.9 Consensus size: 82
3232404 CAGAGAAATA
*
3232414 AAAATGATCAAAATTAAATCACGAGTCAAAAAATGAAAATAATCAAGATT-AAATCACGAGTCAA
1 AAAATGATCAAAATTAAATCACGAGTCAAAAAATAAAAATAATCAAGATTAAAATCA-GAGTCAA
3232478 AAAATGAAAATGACAATT
65 AAAATGAAAATGACAATT
* * * * * * *** * *
3232496 AAAATTATCAAAATTACATTATGAGTCAGAAAATAAAAATGATTGGGATTAAAATGAGAGTTAAA
1 AAAATGATCAAAATTAAATCACGAGTCAAAAAATAAAAATAATCAAGATTAAAATCAGAGTCAAA
3232561 AAATGAAAATGA
66 AAATGAAAATGA
3232573 TCAAAATTAA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
82 59 0.92
83 5 0.08
ACGTcount: A:0.56, C:0.08, G:0.13, T:0.23
Consensus pattern (82 bp):
AAAATGATCAAAATTAAATCACGAGTCAAAAAATAAAAATAATCAAGATTAAAATCAGAGTCAAA
AAATGAAAATGACAATT
Found at i:3232950 original size:106 final size:105
Alignment explanation
Indices: 3232725--3232955 Score: 234
Period size: 106 Copynumber: 2.2 Consensus size: 105
3232715 GGGACTATAC
* ** * * * * *
3232725 CACGAGTCAATAAATGAAAATGATCGGGATTAAATCATGAGTCAAAAAATAAAAATGATAGGGAT
1 CACGAGTCAAAAAATGAAAACAATCGGGATTAAACCATAAGTCAAAAAAGAAAAATGACAGAGAT
* ** *
3232790 TAAACAATGCATCGAAAAATGAAAACGATAGGGATTAGAG
66 TAAACAATGCATCAAAAAATGAAAACGATAGAAATTAAAG
* * * * * *
3232830 CACAAGTTAGAAAATGTAAAACAATGGGGATTAAACCATAAGTCAAAAAGGAAAAATGACCGAGA
1 CACGAGTCAAAAAATG-AAAACAATCGGGATTAAACCATAAGTCAAAAAAGAAAAATGACAGAGA
*
3232895 TTAAACCATG-AGTCAAAAAATGAAAACGATCA-AAATTAAATG
65 TTAAACAATGCA-TCAAAAAATGAAAACGAT-AGAAATTAAA-G
3232937 -ACGAGTCAAAAAATGAAAA
1 CACGAGTCAAAAAATGAAAA
3232956 TGACCGGCAT
Statistics
Matches: 100, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
105 17 0.17
106 81 0.81
107 2 0.02
ACGTcount: A:0.52, C:0.11, G:0.19, T:0.18
Consensus pattern (105 bp):
CACGAGTCAAAAAATGAAAACAATCGGGATTAAACCATAAGTCAAAAAAGAAAAATGACAGAGAT
TAAACAATGCATCAAAAAATGAAAACGATAGAAATTAAAG
Found at i:3234637 original size:105 final size:105
Alignment explanation
Indices: 3233691--3235458 Score: 420
Period size: 106 Copynumber: 16.8 Consensus size: 105
3233681 ACATGAGTTG
* * * * * * * * * *
3233691 GAAAATGAAAACGATCAGGACTAAACCCTGAGTGAGAAAATGAAAACCACCAGGATTAAACCATG
1 GAAAATAAAAATGATCAGGATTAAATCATGAGTCAGAAAATAAAAACGACTAGGATTAAATCATG
* * * * * ** *
3233756 AGTCAAAAAATGAAAGTGA-TCGAGATTCAATTATGAGCCA
66 AGTCAAAAAATAAAAATGACTAGA-ATTAAATCACAAGTCA
** * * * * * *
3233796 GAAAATGAAAAATGATTGGGATTATACCATGAATCAAAAAATAAAAAGGA-TCAGGATTAAATTA
1 GAAAAT-AAAAATGATCAGGATTAAATCATGAGTCAGAAAATAAAAACGACT-AGGATTAAATCA
* * * **
3233860 CGAGTCAAAAAATAAAAATGA-TAAGGATTAAATAACGGGTCA
64 TGAGTCAAAAAATAAAAATGACT-AGAATTAAATCACAAGTCA
* * * * *
3233902 AAAAATGAAAACGA-CTAGGATTAAATCATGAGTCCA-AAAATAAAAATGA-TAGGGATGAAA-C
1 GAAAATAAAAATGATC-AGGATTAAATCATGAGT-CAGAAAATAAAAACGACTA-GGATTAAATC
* * * ** *
3233963 AATGCA-TCAAAAAATGAAAATGA-TAGGGATTAAAGCATGAGTTA
63 -ATG-AGTCAAAAAATAAAAATGACTA-GAATTAAATCACAAGTCA
* * ** * * * * * * *
3234007 AAAAATGTAAAACAAT-AGGGATCAAACCATAAGTCA-AAAAGTGAAAATGA-TCAAGATTAAAC
1 GAAAAT-AAAAATGATCA-GGATTAAATCATGAGTCAGAAAA-TAAAAACGACT-AGGATTAAAT
* * * * * **
3234069 CAGGAGTCAGAAAATGAAAATAAC-CGAAATTAAA-CGATGAGTCA
62 CATGAGTCAAAAAATAAAAATGACTAG-AATTAAATC-ACAAGTCA
* * * ** * * * * *
3234113 AAAAATGAAAATGACCAACATTAAATCAGGAGTCAAAGAAAA-AAAAATGATTAGAATCAAATCA
1 GAAAATAAAAATGATCAGGATTAAATCATGAGTC--AGAAAATAAAAACGACTAGGATTAAATCA
* * * * *
3234177 TGAGTCAGAAAATGAAAATGACTAGGATTAAACCACTAGTCA
64 TGAGTCAAAAAATAAAAATGACTAGAATTAAATCACAAGTCA
* * * ** * * * **
3234219 -AGAAATGAAAATGAT-TGAATTTAAATCACAATTCAG-AAA-AAAAATGACAAAAATTAAATCA
1 GA-AAATAAAAATGATCAGGA-TTAAATCATGAGTCAGAAAATAAAAACGACTAGGATTAAATCA
** * * * * *
3234280 CAAGTCTAAAACTAAAAATGA-TTGGATTAAA-CTA-AGAGTTA
64 TGAGTCAAAAAATAAAAATGACTAGAATTAAATC-ACA-AGTCA
* * * * * * * * *
3234321 AAAAATTAAAACGA-CAGGGATTAAACCACGAGTCA-AAGAATGAAAATGACT-GAGATGAAACC
1 GAAAATAAAAATGATCA-GGATTAAATCATGAGTCAGAA-AATAAAAACGACTAG-GATTAAATC
** * * * * * * * *
3234383 ACCAGTTAGAAAATGAAAAATGATTGGGATTAAACCACGAGTTA
63 ATGAGTCAAAAAAT-AAAAATGACTAGAATTAAATCACAAGTCA
* * * * ** * * *
3234427 GAAAATTAAGA-CAACGAGGATTAAGCCATGAGTCAGAGAAATAAAAATGACCAGAATTAAATCA
1 GAAAATAAAAATGATC-AGGATTAAATCATGAGTCAGA-AAATAAAAACGACTAGGATTAAATCA
* * ***
3234491 CGAGTCAAAAAATTAAAATGA-TAAGAATTAAATCGTGAGTCA
64 TGAGTCAAAAAATAAAAATGACT-AGAATTAAATCACAAGTCA
* * * * *
3234533 GCAAATGAAAATGATCAGGATTAAATCTTGAGTCAGAAAATAAAAACAACTAGGATTAAACCATG
1 GAAAATAAAAATGATCAGGATTAAATCATGAGTCAGAAAATAAAAACGACTAGGATTAAATCATG
* *
3234598 ACTCAAAAAATAAAAACGACTTAG-ATTAAATCACAAGTCA
66 AGTCAAAAAATAAAAATGAC-TAGAATTAAATCACAAGTCA
* * * * * *
3234638 AAAAATAAAAATGATC-GAGATTAAACCATGGGTTAGAAAATGAAAACGA-TTGAGATTAAATCA
1 GAAAATAAAAATGATCAG-GATTAAATCATGAGTCAGAAAATAAAAACGACTAG-GATTAAATCA
* * * * *
3234701 TGAGTGAAAAAATGAAAATGAAC-GGTATTAAATCACAAGCCA
64 TGAGTCAAAAAATAAAAATG-ACTAGAATTAAATCACAAGTCA
** * * * *
3234743 GAGAAATAAAAATGATCAAAATTAAATCATGAGTCAGAAAATGAAAAATGA-TCGGGATTATACC
1 GA-AAATAAAAATGATCAGGATTAAATCATGAGTCAGAAAAT-AAAAACGACT-AGGATTAAATC
* * * * * **
3234807 ACGAGTCAATAAATGAAAATGA-TCGGGATTAAATCATGAGTCA
63 ATGAGTCAAAAAATAAAAATGACT-AGAATTAAATCACAAGTCA
* ** * * * * * * *
3234850 AAAAATAAAAATGATTGGGATT-AAGCAACGCATTGA-AAAATGAAAATGA-TAGGGATTAAAGC
1 GAAAATAAAAATGATCAGGATTAAATC-ATG-AGTCAGAAAATAAAAACGACTA-GGATTAAATC
** * * * * * * * * *
3234912 ACAAGTTAGAAAATGTAAAA-CAATGGGGATTAAACCATAAGTCA
63 ATGAGTCAAAAAAT-AAAAATGACT-AGAATTAAATCACAAGTCA
** * * * * * * *
3234956 -AAAAGGGAAAATGACCAAGATTAAACCATGAGTCAAAAAATGAAAATGAC-CGGCATTAAATCA
1 GAAAA-TAAAAATGATCAGGATTAAATCATGAGTCAGAAAATAAAAACGACTAGG-ATTAAATCA
* * * * *
3235019 TGAGTCAAAGAGATAAAAA-GA-TCGAAATCAAATCACGAGCCA
64 TGAGTCAAA-AAATAAAAATGACTAG-AATTAAATCACAAGTCA
* * * * * * **
3235061 AAAAATGAAAATGATC-GAGATTAAACCACT-AGTCA-AGAAATGAAAATGACCAAAATTAAATC
1 GAAAATAAAAATGATCAG-GATTAAATCA-TGAGTCAGA-AAATAAAAACGACTAGGATTAAATC
** * * * *
3235123 ACAAGTTAGAAAAT-AAAATGA-TCGAAGTTAAATCAGAAGT--
63 ATGAGTCAAAAAATAAAAATGACTAGAA-TTAAATCACAAGTCA
* ** * * * * * * * *
3235163 GTAAAACCAAAAACAACCAGAATTAAAACCACGAGTTAGAAAATTAAAACGGC-ATGGATTAAAC
1 G-AAAA-TAAAAATGATCAGGATT-AAATCATGAGTCAGAAAATAAAAACGACTA-GGATTAAAT
* * * * * * * *
3235227 CACGAGTTAAAGAATGAAAATGACCA-AGATGAAACCAGAAGTCA
62 CATGAGTCAAAAAATAAAAATGACTAGA-ATTAAATCACAAGTCA
* ** * * * * * * * *
3235271 GAAAATGAAAAACGATTGGGATTAAACCATGAGTTAGAAAATAAAGAC-AATGGGGGTTGAACCA
1 GAAAAT-AAAAATGATCAGGATTAAATCATGAGTCAGAAAATAAAAACGACT-AGGATTAAATCA
* * * * * *
3235335 TAAGTCAAAGAAAGAAAAATGAATAGAGTTAAATTACAAGTTA
64 TGAGTCAAA-AAATAAAAATGACTAGAATTAAATCACAAGTCA
* * * *
3235378 GAAAATGAAAATGAT--GGAAATTAAACCATGAGTCAGAAAATGAAAACGATTAGGATTAAATCA
1 GAAAATAAAAATGATCAGG--ATTAAATCATGAGTCAGAAAATAAAAACGACTAGGATTAAATCA
3235441 TGAGTCAAAAAATAAAAA
64 TGAGTCAAAAAATAAAAA
3235459 AGACCCCACG
Statistics
Matches: 1245, Mismatches: 319, Indels: 198
0.71 0.18 0.11
Matches are distributed among these distances:
101 1 0.00
102 37 0.03
103 51 0.04
104 62 0.05
105 400 0.32
106 543 0.44
107 142 0.11
108 9 0.01
ACGTcount: A:0.52, C:0.11, G:0.17, T:0.20
Consensus pattern (105 bp):
GAAAATAAAAATGATCAGGATTAAATCATGAGTCAGAAAATAAAAACGACTAGGATTAAATCATG
AGTCAAAAAATAAAAATGACTAGAATTAAATCACAAGTCA
Found at i:3236368 original size:71 final size:70
Alignment explanation
Indices: 3235727--3236871 Score: 355
Period size: 71 Copynumber: 16.2 Consensus size: 70
3235717 CCTGAATGAG
** * * ** ** * * * *
3235727 AAAATGAAAACCACCAGGATTAAACCACAAGTCAAAAAATGAAAGCGATCGAGTTTCAACGATAA
1 AAAATGAAAAAGACCAAGATTAAACCACAAGTCAAAAAATAAAAATGATTAAGATTAAACCATGA
3235792 GTCAGA
66 GTCA-A
* ** * * * * *
3235798 AAAA-GAAAAACGATCGGGATTATACCACAAGTCAAAAAATGAAAACGATCAAGATTAAATCATG
1 AAAATGAAAAA-GACCAAGATTAAACCACAAGTCAAAAAATAAAAATGATTAAGATTAAACCATG
3235862 AGTCAA
65 AGTCAA
* * * ** * * * * *
3235868 AAAAT-AAAAATGA-TAGGGATTAAA-CA-ATGGGATGAAAAATGAAAACGA-TAGGGATTAGAG
1 AAAATGAAAAA-GACCA-AGATTAAACCACAAGTCA--AAAAATAAAAATGATTA-AGATTAAAC
* *
3235928 CATGAGTTAG
61 CATGAGTCAA
* * * * * *
3235938 AAAATGTAAAACA-AAAGGGATTAAACCACAAGTCAAAAAGTGAAAATGATTGAGATTAAACCAT
1 AAAATGAAAAAGACCAA--GATTAAACCACAAGTCAAAAAATAAAAATGATTAAGATTAAACCAT
3236002 GAGTCAA
64 GAGTCAA
* * * *
3236009 AAAATGAAAACA-ACC-AGAATTAAACGACAAGTCAAAAAATGAAAATGA-TCAGCATTAAATCA
1 AAAATGAAAA-AGACCAAG-ATTAAACCACAAGTCAAAAAATAAAAATGATTAAG-ATTAAACCA
*
3236071 CGAGTCAA
63 TGAGTCAA
* * * * * * **
3236079 AGAAAT-AAAAATGACCAAAATCAAATCACAAATCAGAAAATGAAAATGATCGAGATTAAACCAC
1 A-AAATGAAAAA-GACCAAGATTAAACCACAAGTCAAAAAATAAAAATGATTAAGATTAAACCA-
3236143 T-AGTCAA
63 TGAGTCAA
** * * * * * * *
3236150 GGAATGAAAACA-ATCAAAATTAAATCACGAGTCAGAAAATAAAAATGATCGAA-ATTAAATCAT
1 AAAATGAAAA-AGACCAAGATTAAACCACAAGTCAAAAAATAAAAATGAT-TAAGATTAAACCAT
**
3236213 GAGTGTA
64 GAGTCAA
* * * * *
3236220 AAACT-AAAAATGACCAAGATTAAACCACGAGTCAGAAAATTAAAACTGA-TAGGGATTAAACCA
1 AAAATGAAAAA-GACCAAGATTAAACCACAAGTCA-AAAAATAAAAATGATTA-AGATTAAACCA
* * *
3236283 CGGGTCAG
63 TGAGTCAA
* * *
3236291 AGAATGAAAAAGACCAAGATGAAACCACCAGTCAAAAAATAAAAAATGATTAAGATTAAACCATG
1 AAAATGAAAAAGACCAAGATTAAACCACAAGTCAAAAAAT-AAAAATGATTAAGATTAAACCATG
*
3236356 AGTTAA
65 AGTCAA
* **** * ** * * ** *
3236362 AAAATGAAGACA-ATGGGGATTAAACTATGAGTTAGAGAAATAAAAATGA-CCAGAATTAAATCA
1 AAAATGAA-AAAGACCAAGATTAAACCACAAGTCA-AAAAATAAAAATGATTAAG-ATTAAACCA
* *
3236425 CGAGTCAG
63 TGAGTCAA
* *** ** * * * * * * * **
3236433 AAAATGAAAATGA-TGGGAATTAAACCATGAGTTAGAATATGAAAATGACTGAGATTAAATCACA
1 AAAATGAAAAAGACCAAG-ATTAAACCACAAGTCAAAAAATAAAAATGATTAAGATTAAACCATG
3236497 AGTCAA
65 AGTCAA
* * * * **
3236503 AAAATAAAAAATGACCAAGATTAAACCACAAGTCAGAAAATAAAAATGACT-CGAATTAAATTAT
1 AAAATGAAAAA-GACCAAGATTAAACCACAAGTCAAAAAATAAAAATGATTAAG-ATTAAACCAT
3236567 GAGTCAA
64 GAGTCAA
* ** ** * * * ** * * *
3236574 AAAATGAAAACGACCGGGATTAAACCA-TGGATTAGAAAATGAAAACAACTGACATTAAACCATG
1 AAAATGAAAAAGACCAAGATTAAACCACAAG-TCAAAAAATAAAAATGATTAAGATTAAACCATG
* *
3236638 AGTTAG
65 AGTCAA
** * ** ** ** * * * * **
3236644 AAAATGAAAGCGATCGGGATTAAATGATGAGTCAAAAAATGAAAACGA-TAGGGATTAAAGCACA
1 AAAATGAAAAAGACCAAGATTAAACCACAAGTCAAAAAATAAAAATGATTA-AGATTAAACCATG
3236708 AGTCAAA
65 AGTC-AA
* * * * * * * * *
3236715 AAAATGTAAAACAACGAGAATTAAATCATAAGTCAAAAAGTGAAAATGA-CAGAGATTAAACCAT
1 AAAATGAAAAAGACCAAG-ATTAAACCACAAGTCAAAAAATAAAAATGATTA-AGATTAAACCAT
3236779 GAGTCAA
64 GAGTCAA
* ** ** * * *
3236786 AAATTGAAAACA-ACC-AGAATTAAATGATGAGTCAAAAAATGAAAATGACT-AGTATTAAATCA
1 AAAATGAAAA-AGACCAAG-ATTAAACCACAAGTCAAAAAATAAAAATGATTAAG-ATTAAACCA
3236848 TGAGTCAA
63 TGAGTCAA
3236856 AGAAAT-AAAAATGACC
1 A-AAATGAAAAA-GACC
3236872 GGAGTCAAAT
Statistics
Matches: 821, Mismatches: 198, Indels: 110
0.73 0.18 0.10
Matches are distributed among these distances:
68 4 0.00
69 19 0.02
70 362 0.44
71 368 0.45
72 65 0.08
73 3 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (70 bp):
AAAATGAAAAAGACCAAGATTAAACCACAAGTCAAAAAATAAAAATGATTAAGATTAAACCATGA
GTCAA
Found at i:3236455 original size:106 final size:105
Alignment explanation
Indices: 3236081--3236702 Score: 290
Period size: 106 Copynumber: 5.9 Consensus size: 105
3236071 CGAGTCAAAG
* * * * * *
3236081 AAATAAAAATGACCA-AAATCAAATCACAAATCAGAAAATGAAAATGAT-CGAGATTAAACCACT
1 AAATAAAAATGACCAGACATTAAACCACGAGTCAGAAAATGAAAATGATGGGA-ATTAAACCA-T
** *** * *
3236144 -AGTCAAGGAATGAAAACAATCAAAATTAAA-TCACGAGTCAGA
64 GAGTCAAAAAATGAAAACAAT-GGGATTAAACT-ATGAGTTAGA
* * * * * ***
3236186 AAATAAAAATGATC-GAAATTAAATCATGAGT--GTAAAACTAAAAATGA-CCAAGATTAAACCA
1 AAATAAAAATGACCAGACATTAAACCACGAGTCAG-AAAA-TGAAAATGATGGGA-ATTAAACCA
* * * * * * * *
3236247 CGAGTCAGAAAATTAAAACTGATAGGGATTAAACCACGGGTCAGA
63 TGAGTCAAAAAATGAAAAC-AAT-GGGATTAAACTATGAGTTAGA
* * * * * * **
3236292 GAATGAAAAA-GACCA-AGATGAAACCACCAGTCAAAAAATAAAAAATGAT-TAAGATTAAACCA
1 AAAT-AAAAATGACCAGACATTAAACCACGAGTCAGAAAAT-GAAAATGATGGGA-ATTAAACCA
* *
3236354 TGAGTTAAAAAATGAAGACAATGGGGATTAAACTATGAGTTAGA
63 TGAGTCAAAAAATGAAAACAAT-GGGATTAAACTATGAGTTAGA
*
3236398 GAAATAAAAATGACCAGA-ATTAAATCACGAGTCAGAAAATGAAAATGATGGGAATTAAACCATG
1 -AAATAAAAATGACCAGACATTAAACCACGAGTCAGAAAATGAAAATGATGGGAATTAAACCATG
* * * * * * ** * *
3236462 AGTTAGAATATGAAAATGACTGAGATTAAA-TCACAAGTCAAA
65 AGTCAAAAAATGAAAA-CAATGGGATTAAACT-ATGAGTTAGA
* * * * **
3236504 AAATAAAAAATGACCA-AGATTAAACCACAAGTCAGAAAATAAAAATGACT-CGAATTAAATTAT
1 AAAT-AAAAATGACCAGACATTAAACCACGAGTCAGAAAATGAAAATGA-TGGGAATTAAACCAT
** *
3236567 GAGTCAAAAAATGAAAACGACCGGGATTAAACCATG-GATTAGA
64 GAGTCAAAAAATGAAAAC-AATGGGATTAAACTATGAG-TTAGA
* * * * * * ** **
3236610 AAATGAAAA-CAACTGACATTAAACCATGAGTTAGAAAATGAAAGCGATCGGG-ATTAAATGATG
1 AAATAAAAATGACCAGACATTAAACCACGAGTCAGAAAATGAAAATGAT-GGGAATTAAACCATG
*
3236673 AGTCAAAAAATGAAAACGATAGGGATTAAA
65 AGTCAAAAAATGAAAACAAT-GGGATTAAA
3236703 GCACAAGTCA
Statistics
Matches: 398, Mismatches: 90, Indels: 58
0.73 0.16 0.11
Matches are distributed among these distances:
103 1 0.00
104 7 0.02
105 130 0.33
106 186 0.47
107 73 0.18
108 1 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (105 bp):
AAATAAAAATGACCAGACATTAAACCACGAGTCAGAAAATGAAAATGATGGGAATTAAACCATGA
GTCAAAAAATGAAAACAATGGGATTAAACTATGAGTTAGA
Found at i:3236596 original size:141 final size:138
Alignment explanation
Indices: 3235727--3237062 Score: 501
Period size: 141 Copynumber: 9.5 Consensus size: 138
3235717 CCTGAATGAG
* * * ** * * **
3235727 AAAATGAAAACCACCAGGATTAAACCACAAGTCAAAAAATGAAAGCGATCGAGTTTCAA-CGATA
1 AAAATGAAAACGACCAGGATTAAACCACGAGTCAGAAAATGAAAATGAT-GAGATTAAATC-ACG
* * * ** * * * * *
3235791 AGTCAGAAAAAGAAAAACGATCGGGATTATACCACAAGTCAAAAAATGAAAACGATCAAGATTAA
64 AGTCA-AAAAATAAAAATGACCAAGATTAAACCACAAGTCAGAAAATAAAAATGATCGA-ATTAA
*
3235856 ATCATGAGTCAA
127 ACCATGAGTCAA
* * * * * * * * * * * *
3235868 AAAATAAAAATGA-TAGGGATTAAACAATGGGATGA-AAAATGAAAACGATAGGGATTAGAGCAT
1 AAAATGAAAACGACCA-GGATTAAACCACGAG-TCAGAAAATGAAAATGAT-GAGATTAAATCAC
* * ** * * *
3235931 GAGTTAGAAAATGTAAA--ACAAAAGGGATTAAACCACAAGTCA-AAAAGTGAAAATGATTGAGA
63 GAGTCAAAAAATAAAAATGAC-CAA--GATTAAACCACAAGTCAGAAAA-TAAAAATGATCGA-A
3235993 TTAAACCATGAGTCAA
123 TTAAACCATGAGTCAA
* * * * * *
3236009 AAAATGAAAACAACCAGAATTAAACGACAAGTCAAAAAATGAAAATGATCAGCATTAAATCACGA
1 AAAATGAAAACGACCAGGATTAAACCACGAGTCAGAAAATGAAAATGATGAG-ATTAAATCACGA
* * * * *
3236074 GTCAAAGAAATAAAAATGACCAAAATCAAATCACAAATCAGAAAATGAAAATGATCGAGATTAAA
65 GTCAAA-AAATAAAAATGACCAAGATTAAACCACAAGTCAGAAAATAAAAATGATCGA-ATTAAA
3236139 CCACT-AGTCAA
128 CCA-TGAGTCAA
** * * ** * * * *
3236150 GGAATGAAAACAATCAAAATTAAATCACGAGTCAGAAAATAAAAATGATCGAAATTAAATCATGA
1 AAAATGAAAACGACCAGGATTAAACCACGAGTCAGAAAATGAAAATGAT-GAGATTAAATCACGA
** * * * * *
3236215 GTGTAAAACTAAAAATGACCAAGATTAAACCACGAGTCAGAAAATTAAAACTGATAGGGATTAAA
65 GTCAAAAAATAAAAATGACCAAGATTAAACCACAAGTCAGAAAA-TAAAAATGAT-CGAATTAAA
* * *
3236280 CCACGGGTCAG
128 CCATGAGTCAA
* * * * * * * * * *
3236291 AGAATGAAAAAGACCAAGATGAAACCACCAGTCAAAAAATAAAAAATGATTAAGATTAAACCATG
1 AAAATGAAAACGACCAGGATTAAACCACGAGTCAGAAAAT-GAAAATGA-TGAGATTAAATCACG
* ** * ** * *
3236356 AGTTAAAAAATGAAGACAATG---GGGATTAAACTATGAGTTAGAGAAATAAAAATGACCAGAAT
64 AGTCAAAAAAT-AA-A-AATGACCAAGATTAAACCACAAGTCAGA-AAATAAAAATGATC-GAAT
* * *
3236418 TAAATCACGAGTCAG
124 TAAACCATGAGTCAA
* ** * * * *
3236433 AAAATGAAAATGA-TGGGAATTAAACCATGAGTTAGAATATGAAAATGACTGAGATTAAATCACA
1 AAAATGAAAACGACCAGG-ATTAAACCACGAGTCAGAAAATGAAAATGA-TGAGATTAAATCACG
3236497 AGTCAAAAAATAAAAAATGACCAAGATTAAACCACAAGTCAGAAAATAAAAATGACTCGAATTAA
64 AGTCAAAAAAT-AAAAATGACCAAGATTAAACCACAAGTCAGAAAATAAAAATGA-TCGAATTAA
**
3236562 ATTATGAGTCAA
127 ACCATGAGTCAA
* * * ** * * *
3236574 AAAATGAAAACGACCGGGATTAAACCATG-GATTAGAAAATGAAAACAACTGACATTAAACCATG
1 AAAATGAAAACGACCAGGATTAAACCACGAG-TCAGAAAATGAAAATGA-TGAGATTAAATCACG
* * * ** * ** ** ** * * * * *
3236638 AGTTAGAAAATGAAAGCGATCGGGATTAAATGATGAGTCAAAAAATGAAAACGATAGGGATTAAA
64 AGTCAAAAAATAAAAATGACCAAGATTAAACCACAAGTCAGAAAATAAAAATGAT-CGAATTAAA
* **
3236703 GCACAAGTCAAA
128 CCATGAGTC-AA
* * * * ** * * *
3236715 AAAATGTAAAACAACGAGAATTAAATCATAAGTCA-AAAAGTGAAAATGACAGAGATTAAACCAT
1 AAAATG-AAAACGACCAGGATTAAACCACGAGTCAGAAAA-TGAAAATGA-TGAGATTAAATCAC
* * ** ** ** * * * *
3236779 GAGTCAAAAATTGAAAACAACC-AGAATTAAATGATGAGTCAAAAAATGAAAATGACTAGTATTA
63 GAGTCAAAAAATAAAAATGACCAAG-ATTAAACCACAAGTCAGAAAATAAAAATGA-TCGAATTA
*
3236843 AATCATGAGTCAA
126 AACCATGAGTCAA
* * * * * * * *
3236856 AGAAATAAAAATGACC-GGAGTCAAATCATGAGTCAGAAAATCAAAATGATTGGGATTAAACCAC
1 A-AAATGAAAACGACCAGGA-TTAAACCACGAGTCAGAAAATGAAAATGA-TGAGATTAAATCAC
* * ** * ** * * * * * *
3236920 TAGTC-GAGGATGAAAGCGA-TAGGAATTAAATCACGAGTCAGAAAATAAGAATGACCGAAATTA
63 GAGTCAAAAAATAAAAATGACCAAG-ATTAAACCACAAGTCAGAAAATAAAAATGATCG-AATTA
* * *
3236983 AATCACGAGTCTA
126 AACCATGAGTCAA
* * * * * * * * *
3236996 AAACTAAAAATGACCAGGATTAAACCACGAGTTAAAAAATTAAAATGGTAGGGATTAAACCACGA
1 AAAATGAAAACGACCAGGATTAAACCACGAGTCAGAAAATGAAAATGAT-GAGATTAAATCACGA
3237061 GT
65 GT
3237063 TTGATAATGA
Statistics
Matches: 916, Mismatches: 232, Indels: 96
0.74 0.19 0.08
Matches are distributed among these distances:
138 2 0.00
139 57 0.06
140 147 0.16
141 457 0.50
142 236 0.26
143 10 0.01
144 3 0.00
145 4 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (138 bp):
AAAATGAAAACGACCAGGATTAAACCACGAGTCAGAAAATGAAAATGATGAGATTAAATCACGAG
TCAAAAAATAAAAATGACCAAGATTAAACCACAAGTCAGAAAATAAAAATGATCGAATTAAACCA
TGAGTCAA
Found at i:3236973 original size:140 final size:139
Alignment explanation
Indices: 3236802--3237058 Score: 313
Period size: 139 Copynumber: 1.8 Consensus size: 139
3236792 AAAACAACCA
* * * *
3236802 GAATTAAATGATGAGTCAAAAAATGAAAATGACTAG-TATTAAATCATGAGTCAAAGAAATAAAA
1 GAATTAAATCACGAGTCAAAAAATGAAAATGAC-AGAAATTAAATCACGAGTCAAA-AAATAAAA
* * * *
3236866 ATGACC-GGAGTCAAATCATGAGTCAGAAAATCAAAATGATTGGGATTAAACCACTAGTCGAGGA
64 ATGACCAGGA-TCAAACCACGAGTCAAAAAATCAAAATGATAGGGATTAAACCACTAGTCGAGGA
3236930 TGAAAGCGATAG
128 TGAAAGCGATAG
* * * *
3236942 GAATTAAATCACGAGTCAGAAAAT-AAGAATGACCGAAATTAAATCACGAGTCTAAAACTAAAAA
1 GAATTAAATCACGAGTCAAAAAATGAA-AATGACAGAAATTAAATCACGAGTCAAAAAATAAAAA
* * * *
3237006 TGACCAGGATTAAACCACGAGTTAAAAAATTAAAATGGTAGGGATTAAACCAC
65 TGACCAGGATCAAACCACGAGTCAAAAAATCAAAATGATAGGGATTAAACCAC
3237059 GAGTTTGATA
Statistics
Matches: 98, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
139 52 0.53
140 46 0.47
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (139 bp):
GAATTAAATCACGAGTCAAAAAATGAAAATGACAGAAATTAAATCACGAGTCAAAAAATAAAAAT
GACCAGGATCAAACCACGAGTCAAAAAATCAAAATGATAGGGATTAAACCACTAGTCGAGGATGA
AAGCGATAG
Found at i:3237427 original size:106 final size:105
Alignment explanation
Indices: 3237297--3237567 Score: 317
Period size: 106 Copynumber: 2.6 Consensus size: 105
3237287 TTAAGAGTCT
* * * * * *
3237297 AAAATAGAAAATGACCAGGATTAAATCATGAGTCAGAAAATTAAAACGATAGGGATTAAACCATG
1 AAAAT-GAAAATGATCAAGATTAAATCATGAGTTAGAAAATAAAAATGATCGGGATTAAACCATG
* * *
3237362 AGTCAGAGAATGAAAACTACCGAGATGAAACCACCAATCAA
65 AGTCAAAAAATGAAAACAACCGAGATGAAACCACCAATCAA
* * *
3237403 AAAATGAAAAATGATCAAGATTAAATCATAAGTTAAAAAATAAAAATGATCGGGATTAAGCCATG
1 AAAATG-AAAATGATCAAGATTAAATCATGAGTTAGAAAATAAAAATGATCGGGATTAAACCATG
* ** **** * *
3237468 GGTCAAAAAATGAAAACAACCGAGATTCAACCATGGGTTAG
65 AGTCAAAAAATGAAAACAACCGAGATGAAACCACCAATCAA
* *
3237509 AAAATGAAAATGATCAAGATTAAATCATGAGTTAGAAAATGAAAATGATCGGTATTAAA
1 AAAATGAAAATGATCAAGATTAAATCATGAGTTAGAAAATAAAAATGATCGGGATTAAA
3237568 TCACAAGCTA
Statistics
Matches: 138, Mismatches: 26, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
105 49 0.36
106 89 0.64
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (105 bp):
AAAATGAAAATGATCAAGATTAAATCATGAGTTAGAAAATAAAAATGATCGGGATTAAACCATGA
GTCAAAAAATGAAAACAACCGAGATGAAACCACCAATCAA
Found at i:3237515 original size:141 final size:140
Alignment explanation
Indices: 3237259--3237518 Score: 301
Period size: 141 Copynumber: 1.9 Consensus size: 140
3237249 AAATGACGAG
* * *
3237259 TCAAAAAATAAGAATGATCAAAATTAAATTAAGAGTCTAAAATAGAAAATGACCAGGATTAAATC
1 TCAAAAAATAAAAATGATCAAAATTAAATCAAGAGTCTAAAATAGAAAATGACCAGGATTAAACC
* * * * * *
3237324 ATGAGTCAGAAAATTAAAACGATAGGGATTAAACCATGAGTCAGAGAATGAAAACTACCGAGATG
66 ATGAGTCAAAAAATGAAAACAACAGAGATTAAACCATGAGTCAGAAAATGAAAACTACCGAGATG
3237389 AAACCACCAA
131 AAACCACCAA
* * *
3237399 TCAAAAAATGAAAAATGATCAAGATTAAATCATA-AGT-TAAAAAATA-AAAATGATCGGGATTA
1 TCAAAAAAT-AAAAATGATCAAAATTAAATCA-AGAGTCT--AAAATAGAAAATGACCAGGATTA
* * * * * *
3237461 AGCCATGGGTCAAAAAATGAAAACAACCGAGATTCAACCATGGGTTAGAAAATGAAAA
62 AACCATGAGTCAAAAAATGAAAACAACAGAGATTAAACCATGAGTCAGAAAATGAAAA
3237519 TGATCAAGAT
Statistics
Matches: 98, Mismatches: 18, Indels: 7
0.80 0.15 0.06
Matches are distributed among these distances:
140 10 0.10
141 81 0.83
142 7 0.07
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.20
Consensus pattern (140 bp):
TCAAAAAATAAAAATGATCAAAATTAAATCAAGAGTCTAAAATAGAAAATGACCAGGATTAAACC
ATGAGTCAAAAAATGAAAACAACAGAGATTAAACCATGAGTCAGAAAATGAAAACTACCGAGATG
AAACCACCAA
Found at i:3238210 original size:71 final size:69
Alignment explanation
Indices: 3238039--3238227 Score: 202
Period size: 71 Copynumber: 2.7 Consensus size: 69
3238029 GGATTAAACC
* * * * *
3238039 ACAAGTCAAAAAGTGAAAATGACCAAGA-TAAACCATGAGTCAAAAAATGAAAATGACCAAATTT
1 ACAAGTCAAAAAATGAAAATGA-CAGGATTAAACCACGAGTCAAAAAATAAAAATGACCAAATTC
3238103 AAATA
65 AAATA
* * * *
3238108 ACAAGTCAAAAAATGAAAATGACCGGCATTAAATCACGATTCAAGGAAATAAAAATGACCGAAA-
1 ACAAGTCAAAAAATGAAAATGACAGG-ATTAAACCACGAGTCAA-AAAATAAAAATGACC-AAAT
*
3238172 TCAAATC
63 TCAAATA
* * *
3238179 ACTAGTCAAAAAATGAAAATGATCAGGATTAAACCACTAGTCAAGAAAT
1 ACAAGTCAAAAAATGAAAATGA-CAGGATTAAACCACGAGTCAAAAAAT
3238228 GAGCACGACT
Statistics
Matches: 100, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
68 2 0.02
69 22 0.22
70 17 0.17
71 53 0.53
72 6 0.06
ACGTcount: A:0.53, C:0.15, G:0.14, T:0.18
Consensus pattern (69 bp):
ACAAGTCAAAAAATGAAAATGACAGGATTAAACCACGAGTCAAAAAATAAAAATGACCAAATTCA
AATA
Found at i:3239520 original size:71 final size:70
Alignment explanation
Indices: 3239415--3239615 Score: 181
Period size: 71 Copynumber: 2.8 Consensus size: 70
3239405 GATTGGGATT
* * * * *
3239415 AAACCACAAGTCAAAAAATTAAAACAACAGGGATTATACCATGAGTTAGAGAATGAAAACAATTG
1 AAACCACAAGTCAAAAAATAAAAACAACAGGGATTAAACCACGAGTCAGAAAATGAAAACAATTG
3239480 AGAGG
66 AGAGG
* * *
3239485 AAACCACCAGTCAAAAAATGAAAAACGATCA-GGATTAAACCACGAGTCAGAAAATGAAGACAAT
1 AAACCACAAGTCAAAAAAT-AAAAAC-AACAGGGATTAAACCACGAGTCAGAAAATGAAAACAAT
* * **
3239549 GGGGACT
64 TGAGAGG
** * * * * *
3239556 AAACCATGAGTTAGAGAAATAAAAATGAACA-GAATTAAATCACGAGTCAGAAAATGAAAA
1 AAACCACAAGTCA-AAAAATAAAAA-CAACAGGGATTAAACCACGAGTCAGAAAATGAAAA
3239616 TGATGGGAAT
Statistics
Matches: 106, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
70 18 0.17
71 80 0.75
72 8 0.08
ACGTcount: A:0.52, C:0.14, G:0.18, T:0.15
Consensus pattern (70 bp):
AAACCACAAGTCAAAAAATAAAAACAACAGGGATTAAACCACGAGTCAGAAAATGAAAACAATTG
AGAGG
Found at i:3240234 original size:71 final size:70
Alignment explanation
Indices: 3240108--3240399 Score: 235
Period size: 71 Copynumber: 4.1 Consensus size: 70
3240098 CCTGAATGAG
* * * * * *
3240108 AAAATGAAAACCACTA-TGATTAAACCATGAGTCAAAAAAT-AAAAGTCATCGGGATTAAACGAT
1 AAAATGAAAAACAATAGGGATTAAACCATGAGTCAAAAAATGAAAA--CACCAGGATTAAACGAC
3240171 GAGTCAA
64 GAGTCAA
*
3240178 AAAATGAAAAACAACT-GGGATTATACCATGAGTCAAAAAATGAAAACAACCAGGATTAAATC-A
1 AAAATGAAAAACAA-TAGGGATTAAACCATGAGTCAAAAAATGAAAAC-ACCAGGATTAAA-CGA
*
3240241 TGAGTCAA
63 CGAGTCAA
* ** **
3240249 AATAT-AAAAATTATAGGGATTAAACAACAT--GTCTAAAAAA-GAAAATGCCAGGGATTAAA-G
1 AAAATGAAAAACAATAGGGATTAAAC--CATGAGTC-AAAAAATGAAAACACCA-GGATTAAACG
*
3240309 CACAAGTCAA
62 -ACGAGTCAA
* * * * *
3240319 AAAAT-ATAAAACAATAGGGATTAAACCATGAGTCAAAAAGTGAAAATGATCAAGATTAAACCAC
1 AAAATGA-AAAACAATAGGGATTAAACCATGAGTCAAAAAATGAAAA-CACCAGGATTAAACGAC
3240383 GAGTCAA
64 GAGTCAA
3240390 AAAATGAAAA
1 AAAATGAAAA
3240400 TACCAAAATT
Statistics
Matches: 179, Mismatches: 24, Indels: 37
0.75 0.10 0.15
Matches are distributed among these distances:
69 7 0.04
70 61 0.34
71 100 0.56
72 11 0.06
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (70 bp):
AAAATGAAAAACAATAGGGATTAAACCATGAGTCAAAAAATGAAAACACCAGGATTAAACGACGA
GTCAA
Found at i:3241250 original size:35 final size:35
Alignment explanation
Indices: 3241196--3241396 Score: 165
Period size: 35 Copynumber: 5.7 Consensus size: 35
3241186 TGACTGGGAC
* * * *
3241196 TAAACCTTGAGTGAGAAAATGAAAACCACCAGGAT
1 TAAACCATGAGTCAAAAAATGAAAACGACCAGGAT
* * * **
3241231 TAAACCACGAGTCAAAAAATTAAAGCGATTAGGAT
1 TAAACCATGAGTCAAAAAATGAAAACGACCAGGAT
* **
3241266 TAAACCATGAGTC-AGAAATGAAAAACGACTGGGAT
1 TAAACCATGAGTCAAAAAATG-AAAACGACCAGGAT
* * *
3241301 TATACCATGAGTCAAAAAATGAAAATGACTAGGAT
1 TAAACCATGAGTCAAAAAATGAAAACGACCAGGAT
* * * *
3241336 TAAATCATGAGTCAACAAATTAAAAATGA-CAGAGAT
1 TAAACCATGAGTCAA-AAAATGAAAACGACCAG-GAT
*
3241372 TAAACAATGCA-TCAAAAAATGAAAA
1 TAAACCATG-AGTCAAAAAATGAAAA
3241397 TCACAGGGAT
Statistics
Matches: 133, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
34 5 0.04
35 96 0.72
36 31 0.23
37 1 0.01
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.19
Consensus pattern (35 bp):
TAAACCATGAGTCAAAAAATGAAAACGACCAGGAT
Found at i:3241335 original size:105 final size:106
Alignment explanation
Indices: 3241169--3241359 Score: 258
Period size: 105 Copynumber: 1.8 Consensus size: 106
3241159 TTAAAGCTCA
* * * * *
3241169 AGTCAGAAAATTAAAAATGACTGGGACTAAACCTTGAGTGAGAAAATGAAAACCACCAGGATTAA
1 AGTCAGAAAATGAAAAACGACTGGGACTAAACCATGAGTCAAAAAATGAAAACCACCAGGATTAA
3241234 ACCACGAGTCAAAAAATTAAAGCGATTAGGATTAAACCATG
66 ACCACGAGTCAAAAAATTAAAGCGATTAGGATTAAACCATG
* * ** *
3241275 AGTCAG-AAATGAAAAACGACTGGGATTATACCATGAGTCAAAAAATGAAAATGACTAGGATTAA
1 AGTCAGAAAATGAAAAACGACTGGGACTAAACCATGAGTCAAAAAATGAAAACCACCAGGATTAA
* * *
3241339 ATCATGAGTCAACAAATTAAA
66 ACCACGAGTCAAAAAATTAAA
3241360 AATGACAGAG
Statistics
Matches: 72, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
105 66 0.92
106 6 0.08
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (106 bp):
AGTCAGAAAATGAAAAACGACTGGGACTAAACCATGAGTCAAAAAATGAAAACCACCAGGATTAA
ACCACGAGTCAAAAAATTAAAGCGATTAGGATTAAACCATG
Found at i:3241407 original size:71 final size:70
Alignment explanation
Indices: 3241212--3241408 Score: 179
Period size: 71 Copynumber: 2.8 Consensus size: 70
3241202 TTGAGTGAGA
* * * * * *
3241212 AAATG-AAAACCACCAG-GATTAAACCACGAGTCAAAAAAT-TAAAGCGATTAGGATTAAACCAT
1 AAATGAAAAACGA-CAGAGATTAAACAATGAGTCAAAAAATGAAAATC-ACTAGGATTAAACCAT
*
3241274 GAGTCAG
64 GAGTCAC
* * * * * *
3241281 AAATGAAAAACGACTGGGATTATACCATGAGTCAAAAAATGAAAATGACTAGGATTAAATCATGA
1 AAATGAAAAACGACAGAGATTAAACAATGAGTCAAAAAATGAAAATCACTAGGATTAAACCATGA
3241346 GTCAAC
66 GTC-AC
* *
3241352 AAATTAAAAATGACAGAGATTAAACAATGCA-TCAAAAAATGAAAATCAC-AGGGATTA
1 AAATGAAAAACGACAGAGATTAAACAATG-AGTCAAAAAATGAAAATCACTA-GGATTA
3241409 GAGCCCGAGT
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
69 7 0.07
70 47 0.45
71 50 0.48
72 1 0.01
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (70 bp):
AAATGAAAAACGACAGAGATTAAACAATGAGTCAAAAAATGAAAATCACTAGGATTAAACCATGA
GTCAC
Found at i:3241408 original size:35 final size:34
Alignment explanation
Indices: 3241211--3241437 Score: 124
Period size: 35 Copynumber: 6.4 Consensus size: 34
3241201 CTTGAGTGAG
* *
3241211 AAAATGAAAACCACCA-GGATTAAACCACGAGTCAA
1 AAAATGAAAATCA-CAGGGATTAAA-CATGAGTCAA
* * *
3241246 AAAAT-TAAAGCGATTA-GGATTAAACCATGAGTC-A
1 AAAATGAAAATC-A-CAGGGATTAAA-CATGAGTCAA
* * * *
3241280 GAAATGAAAAACGACTGGGATTATACCATGAGTCAA
1 AAAATGAAAATC-ACAGGGATTA-AACATGAGTCAA
*
3241316 AAAATGAAAATGACTA-GGATTAAATCATGAGTCAA
1 AAAATGAAAATCAC-AGGGATTAAA-CATGAGTCAA
* * * *
3241351 CAAATTAAAAATGACAGAGATTAAACAATGCA-TCAA
1 -AAAATGAAAATCACAGGGATTAAAC-ATG-AGTCAA
* **
3241387 AAAATGAAAATCACAGGGATTAGAGCCCGAGTCAA
1 AAAATGAAAATCACAGGGATTA-AACATGAGTCAA
*
3241422 AAAATGTAAAACCACA
1 AAAATG-AAAATCACA
3241438 AGTAAAAAAG
Statistics
Matches: 151, Mismatches: 27, Indels: 27
0.74 0.13 0.13
Matches are distributed among these distances:
34 11 0.07
35 92 0.61
36 47 0.31
37 1 0.01
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (34 bp):
AAAATGAAAATCACAGGGATTAAACATGAGTCAA
Found at i:3241625 original size:141 final size:140
Alignment explanation
Indices: 3241430--3241768 Score: 346
Period size: 141 Copynumber: 2.4 Consensus size: 140
3241420 AAAAAATGTA
* * * * * *
3241430 AAACCACAAG-TAAAAAAGTGAAAGTGATTGAGATTAAATCACGAGTCATA-AAATGAATACGAT
1 AAACCACCAGTTAGAAAA-TGAAAATGATAGGGATTAAATCACGAGTCA-AGAAATGAAAACGAT
* * * **
3241493 CACAATTAAATGATGAGTCACAAAATGAAAATGATCGGCATTAAATCATGAGTCAAAGAAATAAA
64 AACAATTAAATCATGAGTCACAAAATAAAAATGATCGAAATTAAATCATGAGTCAAA-AAATAAA
*
3241558 AAAGATCGAA-ATC
128 AAAGA-CCAAGATC
* *** * **
3241571 AAATCTTGAGTTAGAAAATGAAAATGAGTA-GGATTAAATCACTAGTCAAGAAATGAAAATTATA
1 AAACCACCAGTTAGAAAATGAAAATGA-TAGGGATTAAATCACGAGTCAAGAAATGAAAACGATA
* * * * *
3241635 AGAATTAAATCATGAGTTAGAAAATAAAAATGATCGAAATTAAATCATGAGTCTAAAACTAAAAA
65 ACAATTAAATCATGAGTCACAAAATAAAAATGATCGAAATTAAATCATGAGTCAAAAAATAAAAA
* *
3241700 TGACCAAGATT
130 AGACCAAGATC
* *
3241711 AAACCACCAGTTAGAAAATTAAAATGATAGGGATTAAACCACGAGT-AAGAAATGAAAA
1 AAACCACCAGTTAGAAAATGAAAATGATAGGGATTAAATCACGAGTCAAGAAATGAAAA
3241769 TAATAGAGAT
Statistics
Matches: 161, Mismatches: 32, Indels: 12
0.79 0.16 0.06
Matches are distributed among these distances:
139 17 0.11
140 49 0.30
141 88 0.55
142 7 0.04
ACGTcount: A:0.52, C:0.10, G:0.16, T:0.22
Consensus pattern (140 bp):
AAACCACCAGTTAGAAAATGAAAATGATAGGGATTAAATCACGAGTCAAGAAATGAAAACGATAA
CAATTAAATCATGAGTCACAAAATAAAAATGATCGAAATTAAATCATGAGTCAAAAAATAAAAAA
GACCAAGATC
Found at i:3241698 original size:35 final size:35
Alignment explanation
Indices: 3241442--3242159 Score: 194
Period size: 35 Copynumber: 20.4 Consensus size: 35
3241432 ACCACAAGTA
* * * *
3241442 AAAAAGTGAAAGTGATTGAGATTAAATCACGAGTC-
1 AAAAA-TGAAAATGATCGAAATTAAATCATGAGTCT
* * *
3241477 ATAAAATGAATACGATC-ACAATTAAATGATGAGTC-
1 A-AAAATGAAAATGATCGA-AATTAAATCATGAGTCT
** *
3241512 ACAAAATGAAAATGATCGGCATTAAATCATGAGTCA
1 A-AAAATGAAAATGATCGAAATTAAATCATGAGTCT
* * * *
3241548 AAGAAATAAAAAAGATCGAAATCAAATCTTGAGT-T
1 AA-AAATGAAAATGATCGAAATTAAATCATGAGTCT
* *
3241583 AGAAAATGAAAATGAGTAG-GATTAAATCACT-AGTC-
1 A-AAAATGAAAATGA-TCGAAATTAAATCA-TGAGTCT
* *
3241618 AAGAAATGAAAATTAT-AAGAATTAAATCATGAGT-T
1 AA-AAATGAAAATGATCGA-AATTAAATCATGAGTCT
*
3241653 AGAAAATAAAAATGATCGAAATTAAATCATGAGTCT
1 A-AAAATGAAAATGATCGAAATTAAATCATGAGTCT
* * * * **
3241689 AAAACTAAAAATGA-CCAAGATTAAACCACCAGT-T
1 AAAAATGAAAATGATCGAA-ATTAAATCATGAGTCT
* * ** * *
3241723 AGAAAATTAAAATGATAGGGATTAAACCACGAG--T
1 A-AAAATGAAAATGATCGAAATTAAATCATGAGTCT
* * * * * *
3241757 AAGAAATGAAAATAATAGAGATGAAACCACT-TGT-T
1 AA-AAATGAAAATGATCGAAATTAAATCA-TGAGTCT
* * * * * *
3241792 AAAAAATGAAAAACGATTTG-GACTAAACCACGAGT-T
1 -AAAAATG-AAAATGA-TCGAAATTAAATCATGAGTCT
* ** * **
3241828 AGAAAATGAAGACAATAGGGATTAAA-CTATGAGT-T
1 A-AAAATGAAAATGATCGAAATTAAATC-ATGAGTCT
* * *
3241863 AGAGAAATAAAAATGA-CTAGAATTAAATCACGAGTC-
1 A-A-AAATGAAAATGATCGA-AATTAAATCATGAGTCT
* * * * ** *
3241899 AGAAAATGAAAACGATGGGAATTAAACCACAAGTCA
1 A-AAAATGAAAATGATCGAAATTAAATCATGAGTCT
* * *
3241935 AAAAATGAAAAAGATC-AGGATTAAATCACGAGT-T
1 AAAAATGAAAATGATCGA-AATTAAATCATGAGTCT
* * * * * *
3241969 AGAAAA-AAAAAAGA-CCAGGATTAAACCATGAGTCA
1 A-AAAATGAAAATGATCGA-AATTAAATCATGAGTCT
* ** *
3242004 AAAAATAAAAATGATCTTAATTAAATCATGAGTCA
1 AAAAATGAAAATGATCGAAATTAAATCATGAGTCT
** * * ** *
3242039 AAAAATGAAAACAATTGATATTAAATCACAAG-CC
1 AAAAATGAAAATGATCGAAATTAAATCATGAGTCT
* * ** *
3242073 AGAGAAATAAAAATGATCAAAATTAAATCACAAAGTCA
1 A-A-AAATGAAAATGATCGAAATTAAATCA-TGAGTCT
* *
3242111 AAAAATGAAAATGATCGAGATTAAACCATGAGTC-
1 AAAAATGAAAATGATCGAAATTAAATCATGAGTCT
3242145 AGAAAATGAAAATGA
1 A-AAAATGAAAATGA
3242160 AATGAAAATT
Statistics
Matches: 518, Mismatches: 118, Indels: 94
0.71 0.16 0.13
Matches are distributed among these distances:
33 2 0.00
34 67 0.13
35 312 0.60
36 128 0.25
37 7 0.01
38 2 0.00
ACGTcount: A:0.52, C:0.10, G:0.16, T:0.21
Consensus pattern (35 bp):
AAAAATGAAAATGATCGAAATTAAATCATGAGTCT
Found at i:3242026 original size:104 final size:106
Alignment explanation
Indices: 3241462--3242156 Score: 287
Period size: 105 Copynumber: 6.6 Consensus size: 106
3241452 AGTGATTGAG
* * * * ** ** ** * *
3241462 ATTAAATCACGAGTCATAAAATGAATACGATCACAATTAAATGATGAGTCACAAAATGAAAATGA
1 ATTAAACCACGAGTCAAAAAATAAAAACGATCGGAATTAAACCACAAGTCAAAAAATGAAAAAGA
* * * *
3241527 TC-GGCATTAAATCATGAGTCAAAGAAATAAAAAAGATC-GAA
66 TCAGG-ATTAAATCACGAGTTAGAGAAATAAAAAAGACCAG-A
* * ** * * * * * * * * **
3241568 ATCAAATCTTGAGTTAGAAAATGAAAATGAGTAGG-ATTAAATCACTAGTCAAGAAATGAAAATT
1 ATTAAACCACGAGTCAAAAAATAAAAACGA-TCGGAATTAAACCACAAGTCAAAAAATGAAAAAG
* * * * *
3241632 ATAAGAATTAAATCATGAGTTAGA-AAATAAAAATGATC-GAA
65 ATCAGGATTAAATCACGAGTTAGAGAAATAAAAAAGACCAG-A
* * * * * ** * * * * *
3241673 ATTAAATCATGAGTCTAAAACTAAAAATGA-CCAAGATTAAACCACCAGTTAGAAAATTAAAATG
1 ATTAAACCACGAGTCAAAAAATAAAAACGATCGGA-ATTAAACCACAAGTCAAAAAATGAAAAAG
* * *
3241737 AT-AGGGATTAAACCACGAG-TA-AGAAATGAAAATA-A-TAGA
65 ATCA-GGATTAAATCACGAGTTAGAGAAAT-AAAAAAGACCAGA
* ** * * * * * *
3241776 GATGAAACCACTTGTTAAAAAATGAAAAACGATTTGG-ACTAAACCACGAGTTAGAAAATGAAGA
1 -ATTAAACCACGAGTCAAAAAAT-AAAAACGA-TCGGAATTAAACCACAAGTCAAAAAATGAA-A
* * * *
3241840 CA-AT-AGGGATTAAA-CTATGAGTTAGAGAAATAAAAATGACTAGA
62 AAGATCA-GGATTAAATC-ACGAGTTAGAGAAATAAAAAAGACCAGA
* * * *
3241884 ATTAAATCACGAGTCAGAAAATGAAAACGATGGGAATTAAACCACAAGTCAAAAAATGAAAAAGA
1 ATTAAACCACGAGTCAAAAAATAAAAACGATCGGAATTAAACCACAAGTCAAAAAATGAAAAAGA
*
3241949 TCAGGATTAAATCACGAGTTAGA-AAA-AAAAAAGACCAGG
66 TCAGGATTAAATCACGAGTTAGAGAAATAAAAAAGACCAGA
* * ** * **
3241988 ATTAAACCATGAGTCAAAAAATAAAAATGATCTTAATTAAATCATGAGTCAAAAAATGAAAACA-
1 ATTAAACCACGAGTCAAAAAATAAAAACGATCGGAATTAAACCACAAGTCAAAAAATGAAAA-AG
* * * ** * * *
3242052 AT-TGATATTAAATCACAAGCCAGAGAAATAAAAATGATCAAA
65 ATCAG-GATTAAATCACGAGTTAGAGAAATAAAAAAGACCAGA
* * * * ** *
3242094 ATTAAATCACAAAGTCAAAAAATGAAAATGATC-GAGATTAAACCATGAGTCAGAAAATGAAAA
1 ATTAAACCAC-GAGTCAAAAAATAAAAACGATCGGA-ATTAAACCACAAGTCAAAAAATGAAAA
3242157 TGAAATGAAA
Statistics
Matches: 453, Mismatches: 108, Indels: 55
0.74 0.18 0.09
Matches are distributed among these distances:
103 3 0.01
104 102 0.23
105 136 0.30
106 136 0.30
107 72 0.16
108 4 0.01
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.21
Consensus pattern (106 bp):
ATTAAACCACGAGTCAAAAAATAAAAACGATCGGAATTAAACCACAAGTCAAAAAATGAAAAAGA
TCAGGATTAAATCACGAGTTAGAGAAATAAAAAAGACCAGA
Found at i:3242180 original size:46 final size:46
Alignment explanation
Indices: 3242113--3242205 Score: 125
Period size: 46 Copynumber: 2.0 Consensus size: 46
3242103 CAAAGTCAAA
*
3242113 AAATGAAAATGATCGAGATTAAACCATGAGTCAGAAAATGAAAATG
1 AAATGAAAATGATAGAGATTAAACCATGAGTCAGAAAATGAAAATG
* ** *
3242159 AAATGAAAATTACTAGA-ATTAAATTATGAGTTAGAAAATGAAAATG
1 AAATGAAAATGA-TAGAGATTAAACCATGAGTCAGAAAATGAAAATG
3242205 A
1 A
3242206 TTGGGATCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
46 38 0.93
47 3 0.07
ACGTcount: A:0.54, C:0.05, G:0.17, T:0.24
Consensus pattern (46 bp):
AAATGAAAATGATAGAGATTAAACCATGAGTCAGAAAATGAAAATG
Found at i:3242334 original size:35 final size:35
Alignment explanation
Indices: 3242228--3242938 Score: 108
Period size: 35 Copynumber: 20.2 Consensus size: 35
3242218 TGGAAGTTAA
* * * *
3242228 AAAATGAAAACGATCGA-ATTAAAGCACGAGTCAG
1 AAAATGAAAACGACCAAGATTAAACCACAAGTCAG
* * * *
3242262 AAAATGAAAACGACTAGGAATAAACC-CTAA-ACAAG
1 AAAATGAAAACGACCAAGATTAAACCAC-AAGTC-AG
*
3242297 AAAATGAAAACCACCAAGATTAAACCACAAGTCAG
1 AAAATGAAAACGACCAAGATTAAACCACAAGTCAG
* * * ** * *
3242332 AAAATGAAAGCGA-TAGGGAGGAAACGACAAGTCAA
1 AAAATGAAAACGACCA-AGATTAAACCACAAGTCAG
* * ** * * * * *
3242367 AAAATGAAAAATGATCGGGACTACACTACGAGTCAA
1 AAAATG-AAAACGACCAAGATTAAACCACAAGTCAG
* * * * * *
3242403 AAAAAGAAAATGACCAGGATTAAATCGCAAGTCAA
1 AAAATGAAAACGACCAAGATTAAACCACAAGTCAG
* * * * *
3242438 AAAATAAAAATGA-CAGGGATTAAA-CA-ATGCATCGG
1 AAAATGAAAACGACCA-AGATTAAACCACAAG--TCAG
* * * * ** *
3242473 AATATGAAAATGA-CAGGGATTAAAGCATGAGTTAG
1 AAAATGAAAACGACCA-AGATTAAACCACAAGTCAG
* *
3242508 AAAATGTAAAAC-AACAAGGATT-AACCATAAGTCA-
1 AAAATG-AAAACGACCAA-GATTAAACCACAAGTCAG
* * * * *
3242542 AAAAGTGAAAATGATCGAGATTAAACCGCAAGTTAG
1 AAAA-TGAAAACGACCAAGATTAAACCACAAGTCAG
* * * ** *
3242578 AAAATGAAAATGATCGAA-ATTAAACAATGAGTCAA
1 AAAATGAAAACGA-CCAAGATTAAACCACAAGTCAG
* * ** *
3242613 AAAATGAAAATGACC-AGCATTAAATCATGAGTCAA
1 AAAATGAAAACGACCAAG-ATTAAACCACAAGTCAG
* * *** * * *
3242648 AGAAATAAAAATGA-TTGGAATCAAATCACGAA-TCAA
1 A-AAATGAAAACGACCAAG-ATTAAACCAC-AAGTCAG
* * ** *
3242684 AAAATAAAAAATGACCGGGATTAAACCACTAGTCAG
1 AAAAT-GAAAACGACCAAGATTAAACCACAAGTCAG
* ** * * * * ** *
3242720 GAAACAAAAAAGATCAATATTAAATCATGAGTCAA
1 AAAATGAAAACGACCAAGATTAAACCACAAGTCAG
* * * * **
3242755 AAAATAAAAATGACCAAAATTAAATCATGAGTCTA-
1 AAAATGAAAACGACCAAGATTAAACCACAAGTC-AG
* * * * **
3242790 AAACTAAAAATGACCAGGATTAAACCATGAGTCAG
1 AAAATGAAAACGACCAAGATTAAACCACAAGTCAG
* * * * **
3242825 GAAATTAAAATGA-CAGGAATTAAACCATGAGTCAG
1 AAAATGAAAACGACCAAG-ATTAAACCACAAGTCAG
* * * * *
3242860 AGAATGAAAATGACTAAGATGAAACCATC-AGTCAA
1 AAAATGAAAACGACCAAGATTAAACCA-CAAGTCAG
* * * *
3242895 AAAATAAAAAATGATCAAGATTAAACCACAAGTCAA
1 AAAAT-GAAAACGACCAAGATTAAACCACAAGTCAG
3242931 AAAATGAA
1 AAAATGAA
3242939 GACAATGGGG
Statistics
Matches: 516, Mismatches: 125, Indels: 71
0.72 0.18 0.10
Matches are distributed among these distances:
33 3 0.01
34 37 0.07
35 350 0.68
36 122 0.24
37 4 0.01
ACGTcount: A:0.53, C:0.13, G:0.17, T:0.17
Consensus pattern (35 bp):
AAAATGAAAACGACCAAGATTAAACCACAAGTCAG
Found at i:3242797 original size:19 final size:19
Alignment explanation
Indices: 3242740--3242797 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
3242730 AGATCAATAT
3242740 TAAATCATGAGTCAAAAAA
1 TAAATCATGAGTCAAAAAA
* * *
3242759 TAAA-AATGA--CCAAAAT
1 TAAATCATGAGTCAAAAAA
* *
3242775 TAAATCATGAGTCTAAAAC
1 TAAATCATGAGTCAAAAAA
3242794 TAAA
1 TAAA
3242798 AATGACCAGG
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
16 9 0.30
17 4 0.13
18 4 0.13
19 13 0.43
ACGTcount: A:0.57, C:0.12, G:0.09, T:0.22
Consensus pattern (19 bp):
TAAATCATGAGTCAAAAAA
Found at i:3242823 original size:105 final size:105
Alignment explanation
Indices: 3242631--3242929 Score: 316
Period size: 105 Copynumber: 2.8 Consensus size: 105
3242621 AATGACCAGC
* ** * *
3242631 ATTAAATCATGAGTCAAAGAAATAAAAATGATTGGAATCAAATCACGAATCAAAAAATAAAAAAT
1 ATTAAATCATGAGTCAAA-AAATAAAAATGACTAAAATCAAATCATGAGTCAAAAAATAAAAAAT
*
3242696 GACCGGGATTAAACCACTAGTCAGGAAACAAAAAAGATCA-A
65 GACCAGGATTAAACCACTAGTCAGGAAACAAAAAAGA-CAGA
* * * *
3242737 TATTAAATCATGAGTCAAAAAATAAAAATGACCAAAATTAAATCATGAGTCTAAAACT-AAAAAT
1 -ATTAAATCATGAGTCAAAAAATAAAAATGACTAAAATCAAATCATGAGTCAAAAAATAAAAAAT
** *
3242801 GACCAGGATTAAACCA-TGAGTCAGGAAATTAAAATGACAGGA
65 GACCAGGATTAAACCACT-AGTCAGGAAACAAAAAAGACA-GA
* * * * * * * *
3242843 ATTAAACCATGAGTCAGAGAATGAAAATGACTAAGATGAAACCATCAGTCAAAAAATAAAAAATG
1 ATTAAATCATGAGTCAAAAAATAAAAATGACTAAAATCAAATCATGAGTCAAAAAATAAAAAATG
* * *
3242908 ATCAAGATTAAACCACAAGTCA
66 ACCAGGATTAAACCACTAGTCA
3242930 AAAAATGAAG
Statistics
Matches: 160, Mismatches: 27, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
104 3 0.02
105 83 0.52
106 56 0.35
107 18 0.11
ACGTcount: A:0.53, C:0.13, G:0.14, T:0.19
Consensus pattern (105 bp):
ATTAAATCATGAGTCAAAAAATAAAAATGACTAAAATCAAATCATGAGTCAAAAAATAAAAAATG
ACCAGGATTAAACCACTAGTCAGGAAACAAAAAAGACAGA
Found at i:3242833 original size:20 final size:19
Alignment explanation
Indices: 3242804--3242864 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 19
3242794 TAAAAATGAC
3242804 CAGG-ATTAAACCATGAGT
1 CAGGAATTAAACCATGAGT
3242822 CAGGAAATTAAA--ATGA--
1 CAGG-AATTAAACCATGAGT
3242838 CAGGAATTAAACCATGAGT
1 CAGGAATTAAACCATGAGT
3242857 CAGAGAAT
1 CAG-GAAT
3242865 GAAAATGACT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
15 7 0.19
16 4 0.11
17 4 0.11
18 8 0.22
19 3 0.08
20 10 0.28
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.20
Consensus pattern (19 bp):
CAGGAATTAAACCATGAGT
Found at i:3242834 original size:142 final size:140
Alignment explanation
Indices: 3242596--3242859 Score: 311
Period size: 142 Copynumber: 1.9 Consensus size: 140
3242586 AATGATCGAA
* **
3242596 ATTAAACAATGAGTCAAAAAATGAAAATGACCAGCATTAAATCATGAGTCAAAGAAATAAAAATG
1 ATTAAACAATGAGTCAAAAAATAAAAATGACCAAAATTAAATCATGAGTCAAAGAAATAAAAATG
** * * *
3242661 ATTGGAATCAAATCACGAATCAAAAAATAAAAAATGACCGGGATTAAACCACT-AGTCAGGAAAC
66 ACAGGAATCAAACCACGAATCAAAAAAT--AAAATGACAGGAATTAAACCA-TGAGTCAGGAAAC
3242725 AAAAAAGATCAAT
128 AAAAAAGATCAAT
* *
3242738 ATTAAATC-ATGAGTCAAAAAATAAAAATGACCAAAATTAAATCATGAGTCTAA-AACTAAAAAT
1 ATTAAA-CAATGAGTCAAAAAATAAAAATGACCAAAATTAAATCATGAGTCAAAGAAATAAAAAT
* * * * *
3242801 GACCAGG-ATTAAACCATGAGTCAGGAAATTAAAATGACAGGAATTAAACCATGAGTCAG
65 GA-CAGGAATCAAACCACGAATCA-AAAAATAAAATGACAGGAATTAAACCATGAGTCAG
3242860 AGAATGAAAA
Statistics
Matches: 103, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
139 1 0.01
140 25 0.24
141 23 0.22
142 53 0.51
143 1 0.01
ACGTcount: A:0.53, C:0.13, G:0.14, T:0.20
Consensus pattern (140 bp):
ATTAAACAATGAGTCAAAAAATAAAAATGACCAAAATTAAATCATGAGTCAAAGAAATAAAAATG
ACAGGAATCAAACCACGAATCAAAAAATAAAATGACAGGAATTAAACCATGAGTCAGGAAACAAA
AAAGATCAAT
Found at i:3243013 original size:35 final size:35
Alignment explanation
Indices: 3242966--3243077 Score: 118
Period size: 35 Copynumber: 3.2 Consensus size: 35
3242956 CACGATCGAG
* **
3242966 ATTAAATCACAAGTTAGAAAATGAAAATGATTGCT
1 ATTAAATCACAAGTTAGAAAATAAAAATGATTGAA
* ** *
3243001 ATTAAATTACAAGCCAGAGAAATAAAAATGATCGAA
1 ATTAAATCACAAGTTAGA-AAATAAAAATGATTGAA
* *
3243037 ATTAAATCACGAGTTTA-AAAATAAAAATGATTGAG
1 ATTAAATCACAAG-TTAGAAAATAAAAATGATTGAA
3243072 ATTAAA
1 ATTAAA
3243078 CCACGACTCA
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
35 36 0.58
36 25 0.40
37 1 0.02
ACGTcount: A:0.53, C:0.08, G:0.13, T:0.26
Consensus pattern (35 bp):
ATTAAATCACAAGTTAGAAAATAAAAATGATTGAA
Found at i:3243092 original size:35 final size:35
Alignment explanation
Indices: 3243020--3243099 Score: 97
Period size: 35 Copynumber: 2.3 Consensus size: 35
3243010 CAAGCCAGAG
* * **
3243020 AAATAAAAATGATCGAAATTAAATCACGAGTTTAA
1 AAATAAAAATGATCGAAATTAAACCACGACTCAAA
* *
3243055 AAATAAAAATGATTGAGATTAAACCACGACTCAAA
1 AAATAAAAATGATCGAAATTAAACCACGACTCAAA
3243090 AAATGAAAAA
1 AAAT-AAAAA
3243100 CGATAATGAA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
35 33 0.87
36 5 0.13
ACGTcount: A:0.57, C:0.10, G:0.11, T:0.21
Consensus pattern (35 bp):
AAATAAAAATGATCGAAATTAAACCACGACTCAAA
Found at i:3243448 original size:35 final size:35
Alignment explanation
Indices: 3243183--3246215 Score: 793
Period size: 35 Copynumber: 85.9 Consensus size: 35
3243173 AAAAATTAGA
* * * *
3243183 ATTAAAGCACGAGTCAAAAAATGAAAGTGACTGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * * ** **
3243218 ACTAAACC-CTGAGTGAGAAAATGAAAACCACTCAG
1 ATTAAACCAC-GAGTCAAAAAATGAAAATGACAGAG
* * * * ** *
3243253 ATTAAACCACAAGTTAGAAAAT-AAAAGCGATTGGG
1 ATTAAACCACGAGTCAAAAAATGAAAA-TGACAGAG
* *
3243288 ATTAAACGATGAGTCAAAAAATGAAAAATGACTAG-G
1 ATTAAACCACGAGTCAAAAAATG-AAAATGAC-AGAG
* * * * * *
3243324 A-CATACCACGAGTCAAAAAAAGAAAACGACTGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * * * *
3243358 ATTAAATCATGATTCAAAAAATTAAAATGACAGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* ** *
3243393 ATTAAACAAC-ATGTTGAAAAATGAAAACGACAGAG
1 ATTAAACCACGA-GTCAAAAAATGAAAATGACAGAG
* * **
3243428 ATTAAAGCACGAGTCAAAAAATATAAAACAAC-GAGG
1 ATTAAACCACGAGTCAAAAAAT-GAAAATGACAGA-G
** *
3243464 ATTAAACCATAAGTCAAAAAGA-AAAAATGACTA-AG
1 ATTAAACCACGAGTCAAAAA-ATGAAAATGAC-AGAG
*
3243499 ATTAAACCACGAGTCAAAAAATAAAAATGACCA-AG
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * *
3243534 ATTAAACCACAAGT-TAGAAA--AAAATGACCCG-G
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * * * * **
3243566 ATTAAATCATGGGCCAGAAAATG-AAACGACCTAG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * * **
3243600 ATTAAATCA-TAGGCCAAAAAATGAAAACAACTAG-G
1 ATTAAACCACGA-GTCAAAAAATGAAAATGAC-AGAG
* * * * * *
3243635 ATTAAACCATGGGTTAGAAAATGAAAAGGACCGAG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * * *
3243670 ATTAAATCATGAGTCAGAAAATGAAAATGATC-GAT
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * * * *
3243705 ATTAAATCACAAGCCAGAGAAATAAAAATGATC-GAA
1 ATTAAACCACGAGTCA-AAAAATGAAAATGA-CAGAG
* * * *
3243741 ATTAAATCACAAGTCAGAAAATGAAAACGATCA-AG
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
** * * *
3243776 ATTAAACCATAAGTCAGAAAATGATAATGATGATGAAGACTATCCAA
1 ATTAAACCACGAGTCAAAAAATG--AA--A--AT---GAC-A--GAG
** * *
3243823 ATTAAATTACGAGCCAAAAAATTAAAATGA-ATGAG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACA-GAG
* * * * *
3243858 ATCAAAACACAAGTTAAAAAATGAAAATGATC-GAA
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * * *
3243893 ATTAAAGCATGTGTTAGAAAATGAAAATTG-CTAG-G
1 ATTAAACCACGAGTCAAAAAATGAAAA-TGAC-AGAG
* * * **
3243928 -GTAAACC-CTGAGTGAGAAAATGAAAACCACCA-AG
1 ATTAAACCAC-GAGTCAAAAAATGAAAATGA-CAGAG
* ** * ** ** *
3243962 ATTAAACTATAAGTCAAAAAATTAAAGCGATTGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* *
3243997 ATTAAACAACAAGTCAAAAAATGAAAATGACCAG-G
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * * *
3244032 ATTCAAGCACGAGTCAAAAAATAAAAATTACAGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* ** * * *
3244067 ATTAAACAACGTA-TTGAAAAATGAAAACGATAGGG
1 ATTAAACCACG-AGTCAAAAAATGAAAATGACAGAG
* * * *
3244102 ATTAAAGCACGAGTTAGAAAATGAAAACGATC-GAG
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
** * *
3244137 ATTAAACCATAAGTCAGAAAATGATAATGACAATGAAG
1 ATTAAACCACGAGTCAAAAAATGAAAATGAC-A-G-AG
** *
3244175 ATTATCCAAATTAAATTAGGAGTCAAAAAATGAAAATGA-ATGAG
1 ---------ATTAAACCACGAGTCAAAAAATGAAAATGACA-GAG
* * * * * *
3244219 ATCAAAACGCAAGTTAAAAAATGAAAATGATC-GAA
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * * * *
3244254 ATTAAAGCATGTGTCAGAAAATGAAAACCG-C-TAG
1 ATTAAACCACGAGTCAAAAAATGAAAA-TGACAGAG
* * **
3244288 -TGTAAACC-CTGAGTGAGAAAATGAAAACCACCA-AG
1 AT-TAAACCAC-GAGTCAAAAAATGAAAATGA-CAGAG
* * *** ** *
3244323 ATTAAACCATGAGTTAAAAAATGAAAGCAATTGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* *
3244358 ATTAAACAACAAGTCAAAAAATGAAAATGACCAG-G
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * * *
3244393 ATTCAAGCACGAGTCAAAAAATAAAAATTACAGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* ** * * *
3244428 ATTAAACAACGTA-TTGAAAAATGAAAACGATAGGG
1 ATTAAACCACG-AGTCAAAAAATGAAAATGACAGAG
* * *
3244463 ATTAAAGCACGAGTCAGAAAATGTAAA--ACAATGAGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGAC-A-GA-G
*
3244499 ATTAAATCACGAGTCAAAAAATGAAAATGACCA-AG
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * **
3244534 ATTAAACCATGAGTCAAAAAATAAAAATGATTG-G
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
** *
3244568 AATTAAATGACGAGTCAAAAAATGAAAATGACCG-G
1 -ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * **
3244603 CATTAAATCACGAGTCAAAGAAATAAAAATGATGGA-
1 -ATTAAACCACGAGTCAAA-AAATGAAAATGACAGAG
* * * * *
3244639 AATAGAATCATGAGTCAGAAAATGAAAATGATTAG-G
1 ATTA-AACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * **
3244675 ATTAAACCACTAGTCAAGAAACAAAAATGATCAGA-
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * * * * *
3244710 ATTAAATCACAAGTTAGAAAATAAAAATGACTGAA
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
** * * * *
3244745 ATTAAATGACGAGTCTAAAACTGAAAATGACTGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * * *
3244780 ATTAAACCATGAATCAAAAAATTAAAACT-ACTG-G
1 ATTAAACCACGAGTCAAAAAATGAAAA-TGACAGAG
* * * * *
3244814 TATTAAACTATGAGTTAGAGAAT-AAAATGATC-GAG
1 -ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* ** * * * *
3244849 ATGAAACCA-TTG-CAAAAACTAAAAAGCGATC-GGG
1 ATTAAACCACGAGTCAAAAAATGAAAA-TGA-CAGAG
** * ** *
3244883 ATTAAACCATTAGTCAAAAAATGAAGACAACAGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * * * *
3244918 ATTAAACCACGAGTTAGAGAAATAAAAAAGACCA-AA
1 ATTAAACCACGAGTCA-AAAAATGAAAATGA-CAGAG
* * * * *
3244954 ATTAAATCATGAATCAAAAAATGAAAATGA-TGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * * ** *
3244988 AATTAAACCATGAGTCAGAAAATTAAAATGATTGAA
1 -ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * **
3245024 ATTAAATCACGAGTCAAAAAATAAAAACAACCA-AG
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * *
3245059 ATTAAACCATGTGTCAAAAAAT-AAAGACGACTCGA-
1 ATTAAACCACGAGTCAAAAAATGAAA-ATGAC-AGAG
* * * * *
3245094 ACTAAATCACAAGTCAGAAAATGAAAACGAACCA-A-
1 ATTAAACCACGAGTCAAAAAATGAAAATG-A-CAGAG
* * * * * **
3245129 ACTAAATCACAAGTTAGAAAATGAAAACCACCA-AG
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* *** *
3245164 ATTAAACCATGAGTCAAAAAATGAAAGCAATTAG-G
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * * *
3245199 ATTAAACGATGAGTTAGAAAATGAAAAACGACTAG-G
1 ATTAAACCACGAGTCAAAAAATG-AAAATGAC-AGAG
* * ** * *
3245235 ATTATACCATGAGTCAAAAAATGAAAACAACTGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * * *
3245270 ATTAAATCACGAGTCAAAAAATAAAAATGATAGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
** * *
3245305 ATTAAATAAC-ATATCAAAAAATGAAAATGACAGGG
1 ATTAAACCACGA-GTCAAAAAATGAAAATGACAGAG
* * ** * *
3245340 ATTAAATCATGAGTCAAGAAAATGTAAAACAATAGGG
1 ATTAAACCACGAGTCAA-AAAATG-AAAATGACAGAG
* * *
3245377 ATTAAACCACAAGTCAAAAAGTGAAAATGACTGAG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* *
3245412 ATTAAACCATGAGTCAGAAAATGAAAATGATCAGA-
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
** * *
3245447 ATTAAATGACGAGTCAAAAAATGGAAATGATCAG-C
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * * *
3245482 ATTAAATCACGAGTCAAGGAAATAAAAATGACTGAA
1 ATTAAACCACGAGTCAA-AAAATGAAAATGACAGAG
* * * *
3245518 ATCAAATCACAAGTCAGAAAATGAAAATGACCA-AG
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * *
3245553 ATTAAACCACTAGTCAAGAAACGAAAATGACCAGA-
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * *
3245588 ATTAAATCTCGAGTCAAAAAATAAAAATGACCA-AA
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
** * * * **
3245623 ATTAAATTACAAGTCTAAAATTGAAAATGATTG-G
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* ** ** *
3245657 TACTAAACCACGAGTCAGGAAATGAAAACAACAGGG
1 -ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
** * * *
3245693 ATTAAACCATAAGTTAGAAAATGAAAATGACCGAG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * *
3245728 ATGAAACCACCAGTTAAAAAATGAAAAATGATCA-AG
1 ATTAAACCACGAGTCAAAAAATG-AAAATGA-CAGAG
* * * ** * *
3245764 ACTAAACCATGAGTCAAAAAATGAAGACAATAGGG
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* ** * *
3245799 ATTAAACTACGAGTCAGAGGAATAAAAATGACCA-AA
1 ATTAAACCACGAGTCA-AAAAATGAAAATGA-CAGAG
** * * * * **
3245835 ATTAAATTAGGAGTTAGAAAATGAAAACGATTG-G
1 ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * * *
3245869 AATTAAACCACAAGTCAAAATATGAAAATGATAGAA
1 -ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
* * *
3245905 ATTAAATCACGACTCAAAAAATAAAAATGATCAG-G
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* ** * **
3245940 ATTAAAGCATAAGTCAAAAAATAAAAACAATTC-GA-
1 ATTAAACCACGAGTCAAAAAATGAAAATGA--CAGAG
* * * * *
3245975 ATTGAATCATGAGCCAAAAAAATGAAAATGATA-AGG
1 ATTAAACCACGAGTC-AAAAAATGAAAATGACAGA-G
* *
3246011 ATTAAACCA-TAGGTCAAAAAACT-AAAATGACTGAG
1 ATTAAACCACGA-GTCAAAAAA-TGAAAATGACAGAG
** * * * *
3246046 ATTAAACCGTGGGTTAGAAAATGAAAACGACCA-AG
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * *
3246081 ATTAAATCATGAGTTAGAAAATGAAAAT-ATC-G-G
1 ATTAAACCACGAGTCAAAAAATGAAAATGA-CAGAG
* * * * * *
3246114 TATTAAATCACAAGCCAGAGAAATAAAAATGATC-GAA
1 -ATTAAACCACGAGTCA-AAAAATGAAAATGA-CAGAG
* * *
3246151 ATTAAATCACAAGTTC-AAAAATGAAAACGATC-GAG
1 ATTAAACCACGAG-TCAAAAAATGAAAATGA-CAGAG
*
3246186 ATTAAACCACAAGTCAAAAAATGAAAATGA
1 ATTAAACCACGAGTCAAAAAATGAAAATGA
3246216 TAATAAAAAT
Statistics
Matches: 2222, Mismatches: 604, Indels: 344
0.70 0.19 0.11
Matches are distributed among these distances:
32 23 0.01
33 16 0.01
34 165 0.07
35 1586 0.71
36 330 0.15
37 38 0.02
38 6 0.00
39 2 0.00
41 3 0.00
43 2 0.00
44 5 0.00
45 5 0.00
47 41 0.02
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (35 bp):
ATTAAACCACGAGTCAAAAAATGAAAATGACAGAG
Found at i:3245308 original size:141 final size:139
Alignment explanation
Indices: 3244322--3251657 Score: 656
Period size: 141 Copynumber: 51.9 Consensus size: 139
3244312 AAACCACCAA
* * * * ** ** *
3244322 GATTAAACCATGAGTTAAAAAATGAAAGCAATTGGGATTAAACAACAAGTCAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAAC-ATGAGTCAAAAAATGAAAACG
* * * * * * * **
3244387 ACCAGGATTCAAGCACGAGTCAAAAAATAAAAATTACAGGGATTAAA-CAACGTA-TTGAAAAAT
65 ACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATC-ACG-AGTCAAAAAAT
*
3244450 GAAAACGATAGG
128 GAAAATGATAGG
* * * * *
3244462 GATTAAAGCACGAGTCAGAAAATGTAAAACAATGAGGATTAAATCACGAGTCAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATG-AAAACAATCAGGATTAAA-CATGAGTCAAAAAATGAAAAC
* * * * * *
3244527 GACCAAGATTAAACCATGAGTCAAAAAATAAAAATGATTGGAATTAAATGACGAGTCAAAAAATG
64 GACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAATG
**
3244592 AAAATGACCGG
129 AAAATGATAGG
* * * *
3244603 CATTAAATCACGAGTCAAAGAAAT--AAA-AATGATGGAAATAGAATCATGAGTCAGAAAATGAA
1 GATTAAATCACGAGTCAAA-AAATGAAAACAATCA-GG-ATTA-AA-CATGAGTCAAAAAATGAA
* * * ** * * * * *
3244665 AATGATTAGGATTAAACCACT-AGTCAAGAAACAAAAATGA-TCAGAATTAAATCACAAGTTAGA
61 AACGACTAGGATTAAACCA-TGAGTCAAAAAATGAAAATGACT-GGGATTAAATCACGAGTCAAA
* *
3244728 AAATAAAAATGACT-GA
124 AAATGAAAATGA-TAGG
* * * * ** * * *
3244744 AATTAAATGACGAGTCTAAAACTGAAAATGA-CTGGGATTAAACCATGAATCAAAAAATTAAAAC
1 GATTAAATCACGAGTCAAAAAATGAAAACAATC-AGGATTAAA-CATGAGTCAAAAAATGAAAAC
* * * * * * * *
3244808 TACT-GGTATTAAACTATGAGTTAGAGAAT-AAAATGA-TCGAGATGAAA-C-C-ATTGCAAAAA
64 GACTAGG-ATTAAACCATGAGTCAAAAAATGAAAATGACT-GGGATTAAATCACGAGT-CAAAAA
* * * *
3244867 CTAAAAAGCGATCGG
126 ATGAAAA-TGATAGG
* ** * * * * *
3244882 GATTAAACCATTAGTCAAAAAATGAAGACAA-CAGGGATTAAACCACGAGTTAGAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCA-GGATTAAA-CATGAGTCA-AAAAATGAAAA
* * ** * * * * *
3244946 AGACCAAAATTAAATCATGAATCAAAAAATGAAAATGA-TGGGAATTAAACCATGAGTCAGAAAA
63 CGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGG-ATTAAATCACGAGTCAAAAAA
* * *
3245010 TTAAAATGATTGA
127 TGAAAATGATAGG
* * * * *
3245023 AATTAAATCACGAGTCAAAAAATAAAAACAACCAAGATTAAACCATGTGTCAAAAAAT-AAAGAC
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAA-CATGAGTCAAAAAATGAAA-AC
* * * * ** * * *** * * * *
3245087 GACTCGAACTAAATCACAAGTCAGAAAATGAAAACGAAC-CAAACTAAATCACAAGTTAGAAAAT
64 GACTAGGATTAAACCATGAGTCAAAAAATGAAAATG-ACTGGGATTAAATCACGAGTCAAAAAAT
** * *
3245151 GAAAACCACCA-A
128 GAAAATGA-TAGG
* * * * * *
3245163 GATTAAACCATGAGTCAAAAAATGAAAGCAATTAGGATTAAACGATGAGTTAGAAAATGAAAAAC
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAAC-ATGAGTCAAAAAATG-AAAAC
* ** *
3245228 GACTAGGATTATACCATGAGTCAAAAAATGAAAACAACTGGGATTAAATCACGAGTCAAAAAATA
64 GACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAATG
3245293 AAAATGATAGG
129 AAAATGATAGG
* * **
3245304 GATTAAATAAC-ATATCAAAAAATGAAAATGA-CAGGGATTAAATCATGAGTCAAGAAAATGTAA
1 GATTAAATCACGA-GTCAAAAAATGAAAACAATCA-GGATTAAA-CATGAGTCAA-AAAATG-AA
* ** * * * * *
3245367 AAC-AATAGGGATTAAACCACAAGTCAAAAAGTGAAAATGACTGAGATTAAACCATGAGTCAGAA
61 AACGACTA-GGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAA
3245431 AATGAAAATGATCA-G
125 AATGAAAATGAT-AGG
* * * ** * * * * *
3245446 AATTAAATGACGAGTCAAAAAATGGAAATGATCAGCATTAAATCACGAGTCAAGGAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAA-CATGAGTCAA-AAAATGAAAAC
* * * ** * *** * * * *
3245511 GACT-GAAATCAAATCACAAGTCAGAAAATGAAAATGACCAAGATTAAACCACTAGTCAAGAAAC
64 GACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAAT
*
3245575 GAAAATGACCA-G
128 GAAAATGA-TAGG
* * * ** * ** * ** * * *
3245587 AATTAAATCTCGAGTCAAAAAATAAAAATGACCAAAATTAAATTACAAGTCTAAAATTGAAAATG
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAA-CATGAGTCAAAAAATGAAAACG
* * * ** ** * * ** * *
3245652 A-TTGGTACTAAACCACGAGTCAGGAAATGAAAACAACAGGGATTAAACCATAAGTTAGAAAATG
65 ACTAGG-ATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAATG
** *
3245716 AAAATGACCGA
129 AAAATGATAGG
* * * * * * *
3245727 GATGAAACCACCAGTTAAAAAATGAAAA-ATGATCAAGACTAAACCATGAGTCAAAAAATGAAGA
1 GATTAAATCACGAGTCAAAAAATGAAAACA--ATCAGGATTAAA-CATGAGTCAAAAAATGAAAA
* * * ** * **** * * * *
3245791 C-AATAGGGATTAAACTACGAGTCAGAGGAATAAAAATGACCAAAATTAAATTAGGAGTTAGAAA
63 CGACTA-GGATTAAACCATGAGTCA-AAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAA
* *
3245855 ATGAAAACGATTGG
126 ATGAAAATGATAGG
* * * * ** * * * * *
3245869 AATTAAACCACAAGTCAAAATATGAAAATGAT-AGAAATTAAATCACGACTCAAAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAG-GATTAAA-CATGAGTCAAAAAATGAAAAC
* * * ** * * * * * *
3245933 GA-TCAGGATTAAAGCATAAGTCAAAAAATAAAAACAATTCGAATTGAATCATGAGCCAAAAAAA
64 GACT-AGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTC-AAAAAA
*
3245997 TGAAAATGATAAG
127 TGAAAATGATAGG
* * ** * * * * *
3246010 GATTAAACCA-TAGGTCAAAAAACT-AAAATGA-CTGAGATTAAACCGTGGGTTAGAAAATGAAA
1 GATTAAATCACGA-GTCAAAAAA-TGAAAACAATCAG-GATTAAA-CATGAGTCAAAAAATGAAA
* * * * * * * * *
3246072 ACGACCAAGATTAAATCATGAGTTAGAAAATGAAAAT-A-TCGGTATTAAATCACAAGCCAGAGA
62 ACGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACT-GGGATTAAATCACGAGTCA-AAA
* * *
3246135 AATAAAAATGATCGA
125 AATGAAAATGATAGG
* * * **
3246150 AATTAAATCACAAGTTC-AAAAATGAAAACGATC-GAGATTAAACCACAAGTCAAAAAATGAAAA
1 GATTAAATCACGAG-TCAAAAAATGAAAACAATCAG-GATTAAA-CATGAGTCAAAAAATGAAAA
* * ** * * * * **** * * **
3246213 TGA-TA--ATAAAAATTATCAAAATTAAATTGCAAGTCAGAAAATGAAAATGATCGGGATTAAAA
63 CGACTAGGAT-TAAACCAT--GAGTCAAA----AAAT--GAAAATGACTGGGAT---TA-AATCA
* * *
3246275 CGTGAGTTAAAAAATGAAAATTACCA-G
115 C--GAGTCAAAAAATGAAAATGA-TAGG
* * * * * ** * * *
3246302 AATTAAAGCATGAGTTAGAAAATGAAAATGA-CTAGGACTAAACACTGAGTGAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATGAAAACAATC-AGGATTAAACA-TGAGTCAAAAAATGAAAAC
* ** * ** * * *
3246366 CACTAGGATTAAACCACAAGTCAAAAAATG-AAA-GCAATCAAGATTAAATGATGAGTCAGAAAA
64 GACTAGGATTAAACCATGAGTCAAAAAATGAAAATG-ACT-GGGATTAAATCACGAGTCAAAAAA
*
3246429 TGAAAAACGACTA-G
127 TG-AAAATGA-TAGG
* ** * ** *
3246443 GATTATA-CAATAAATCAAAAAATGAAAATGA-CTAGGATTAAATCATGAGTCAAAAAATTAAAA
1 GATTAAATC-ACGAGTCAAAAAATGAAAACAATC-AGGATTAAA-CATGAGTCAAAAAATGAAAA
* * * * * * * * * *
3246506 TGACAAGGATTAAACAACA-CATTGAAAAAA-GAAAATGACAGGGATTAAAACATGAATCAGAAA
63 CGACTAGGATTAAAC--CATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAA
** *
3246569 ATGTAAAACAATGGG
126 ATG-AAAATGATAGG
* ** * ** * ** *
3246584 GATTAAACCATAAGTCAAAAAGTGAAAATGACCAAAATTAAACCACGAGTCAAAAAATGAAAACG
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAA-CATGAGTCAAAAAATGAAAACG
* * * * * * * * *
3246649 ATTAGGATTAAATCACGAGT-AAGAAAATAAAAACGACTAGGATTAAACCACGAGTCAGAAAATA
65 ACTAGGATTAAACCATGAGTCAA-AAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAATG
*
3246713 AAAATGACTTGG
129 AAAATGA-TAGG
* * ** ** *
3246725 G-TTAAATCA-TAGGCAAAAAAATGAAATGACCCA-GATTAAATCATGAGCCAAAAAATG-AAA-
1 GATTAAATCACGAGTC-AAAAAATGAAAACAATCAGGATTAAA-CATGAGTCAAAAAATGAAAAC
* * * * * * * ** * * * * *
3246785 -A-T--GATTAAACTAGGGGTTAGAAAATGAAAACGATTGAAATTAAACCATGGGTTAGAAAATG
64 GACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAATG
* *
3246846 AAAATGATCGA
129 AAAATGATAGG
* *** ** ** * * **
3246857 GATTAAATCATGAGTCAGTCAATGAAAATGATC-GGTATTAAATCACAAGCCAGAGAAACAAAAA
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGG-ATTAAA-CATGAGTCA-AAAAATGAAAA
* ** * * * * * ** * * * * *
3246921 TGA-TGAAAATTAAATCACGAGTCAGAAAATGAAAACGATTAAGATTTAACCAAGAGTTAGAAAA
63 CGACT-AGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAA
**
3246985 TGAAAACAATAATGAACATTACCAA
127 TG-----AA-AATG---A-TA--GG
* * * * ** * * * * *
3247010 AATTAAATTACGAGTCAGAAAATAAAAATTATCCA-GA-AAAAAATGCGTGTTAAAAAATTAAAA
1 GATTAAATCACGAGTCAAAAAATGAAAACAAT-CAGGATTAAACAT--GAGTCAAAAAATGAAAA
* * ** * * * * * * *
3247073 CGACTAGAATTAAAGCGCGAGT-AAAAAA--AAAACGGCTAGGA-TAAA-CCCTAAGTGAGAAAA
63 CGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCAC-GAGTCAAAAAA
* ** * *
3247133 TAAAAACCACCA-A
127 TGAAAATGA-TAGG
* * * * ** *
3247146 GATTAAACCACGAGTCAAAAAATGAAAGCGATTAGGATTAAACAACAAGTCAGAAAATGAAAAAC
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAAC-ATGAGTCAAAAAATG-AAAAC
* * * *
3247211 GACCAGGATTATACTATGAGTCAAAAAATGAAAATGA-TCGGGATTAAAGCACGAGTCAAAAAAT
64 GACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACT-GGGATTAAATCACGAGTCAAAAAAT
* *
3247275 AAAAATGATAAG
128 GAAAATGATAGG
* * ** * *
3247287 GATTAAA-CAAG-GCATCGAAAAATGAAAATGAT-AGGGATTCAACATGAGTCAGAAAATGTAAA
1 GATTAAATCACGAG--TCAAAAAATGAAAACAATCA-GGATTAAACATGAGTCAAAAAATG-AAA
* * * ** * * * *
3247349 AC-AATGGGGATTAAGCCACAAGTTAAAAACTGAAAATGA-TGGAGATTAAACCACGAGTGAAAA
62 ACGACT-AGGATTAAACCATGAGTCAAAAAATGAAAATGACTGG-GATTAAATCACGAGTCAAAA
*
3247412 AATGAAAATGTTCA-G
125 AATGAAAATGAT-AGG
* * * * ** * * *
3247427 AATTAAATGATGACTCAAAAAATGAAAATGA-CAGGCATTAAATCATAAGTC-AAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGG-ATTAAA-CATGAGTCAAAAAATGAAAAC
* * * * * * * * * * *
3247490 GACTAGAATCAAATCATGAGTTACAAAATGAAAATGTCTGGGATTAAACCACTATTTAAGAAATG
64 GACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAATG
*
3247555 AAAACGACTA-G
129 AAAATGA-TAGG
* * * * * ** * * *
3247566 AATTAAATCATGAGTTAGAAAA-GAAAA-ATGAACAAAATTAAATCACGAGTCTAAAACTGAAAA
1 GATTAAATCACGAGTCAAAAAATGAAAACA--ATCAGGATTAAA-CATGAGTCAAAAAATGAAAA
* * ** * * * * *
3247629 TGA-TTGGATTAAACCACAAGTCAAAAAATTAAAATGA-TAGGGATTAAA-CTATGAGTTAGAGA
63 CGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACT-GGGATTAAATC-ACGAGTCAAAAA
* *
3247691 AT-AAAATAACT-GA
126 ATGAAAATGA-TAGG
* * * * * *
3247704 GATGAAACCACTAGTCAAAAAATGAAAA-ATGATCGGGATTAAACCATGAGTCAGAAAATGAAGA
1 GATTAAATCACGAGTCAAAAAATGAAAACA--ATCAGGATTAAA-CATGAGTCAAAAAATGAAAA
* * * * * * **** *
3247768 CAACGAGGATTAAACCATGAGTTAGAGAAATAAAAATAACCATAATTAAATCATGAGTC-----A
63 CGACTAGGATTAAACCATGAGTCA-AAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAA
3247828 -G--AA--A-A--
127 TGAAAATGATAGG
* * * * * ** * ** * *
3247833 GATTAAACCATGTGTCAGAAAATAAAAATGA-CTTGGATTAAATCACAAGTCAGAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATGAAAACAATC-AGGATTAAA-CATGAGTCAAAAAATGAAAAC
* * * * * * * * *
3247897 GATTAGGATTAAACCATGGGTCAAAAAATGAAAATGACCGAGATTGAACCATTG-GTTAGAAAAT
64 GACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCA-CGAGTCAAAAAAT
* * *
3247961 GAAAACGACCA-A
128 GAAAATGA-TAGG
* * * * * * * *
3247973 GATTAAATCATGAGTTAGAAAATGAAAACGATCAGCATTAAATCATAAG-CTAGAAAAGTAAAAA
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAA-CATGAGTC-A-AAAAATGAAAA
* * * * * ** * * * *
3248037 TGA-TTGAAATTAAATCATGAGTCAGAAAATGAAAACAATTGAGATTAAATCACAAGTCAGAAAA
63 CGACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAA
*
3248101 TGAAAAAAATAATGAAAATGACTGA
127 TG-----AA-AATG---AT-A--GG
* * * * * ** * * *
3248126 AATTATATTATGAGTCAGAAAATGAAAATGATCGGGATTAAGA-AGTGAGTTAAAAAATG-AAAT
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAA-ACA-TGAGTCAAAAAATGAAAAC
** * * * * * * ** *
3248189 GACT-GGAATTAAAGTATGAGTCAGAAAATGAAAATGATTCGGACTAAA-CCCTAAACGAGAAAA
64 GACTAGG-ATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTC-AAAAAA
3248252 TGAAAACT-AGTA-G
127 TGAAAA-TGA-TAGG
* * * * * * *
3248265 GATTAAACCACAAGTCAGAAAATGAAAGCGATC-GACATTAAACGATGAGTCAGAAAATGAAAAA
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAG-GATTAAAC-ATGAGTCAAAAAATG-AAAA
* * * * * *
3248329 TGACTAGGATTATACCACGAATCAAAAAATGAAAATGACTGAGATTAAATCATGAGTCAAAAAAT
63 CGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAAT
* *
3248394 AAAAATGACAGG
128 GAAAATGATAGG
* ** ** * *
3248406 GATTAAA-CAAC-ATATTGAAAAATGAAAATGA-CAGGGATTAAAGCACGAGTCAGAAAATGTAA
1 GATTAAATC-ACGA-GTCAAAAAATGAAAACAATCA-GGATTAAA-CATGAGTCAAAAAATG-AA
* * ** * ** * * *
3248468 AAC-AATGGGGATTAAACCACAAGTCAAAAAGTGAAAATGA-TCAAGATTAAACCATGTGTCAAA
61 AACGACT-AGGATTAAACCATGAGTCAAAAAATGAAAATGACT-GGGATTAAATCACGAGTCAAA
* ** *
3248531 AAATGAAAACGACCGA
124 AAATGAAAATGATAGG
* * * * * * * ** * * **
3248547 GATTAAATCATGAGTTAGAAAATAAAAACGACCAAGATTAAACCACAAGTCAGAAAATAAAAATA
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAA-CATGAGTCAAAAAATGAAAACG
** * ** * * * *
3248612 ACTCTGATTAAATCACA-G-GCCAAAAAATG-AAATGACCCGGATTACATCATG-GGCTAGAAAA
65 ACTAGGATTAAA-C-CATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTC-AAAAAA
** * *
3248673 TGAAAACAACCA-A
127 TGAAAATGA-TAGG
* * * * ** * * * *
3248686 GATTAAACCATGGGTCAGAAAATGAAAATGA-CAGAGATTAAACCATGGGTTAGAAAATGAAAGC
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAG-GATTAAA-CATGAGTCAAAAAATGAAAAC
* * * * * *
3248750 GA-TTGAGATTAAATCACGAGTCAAAAAATGAAAATGA-TAGGTATTAAATCACAAG-CTAGAGA
64 GACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACT-GGGATTAAATCACGAGTC-A-AAA
* *
3248812 AATAAAAATGATCA-A
125 AATGAAAATGAT-AGG
* ** * *
3248827 AATTAAATCACGAGTCAAAAAATGAAAATGAT-TGAGATTAAACCACGAGTCAAAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAG-GATTAAA-CATGAGTCAAAAAATGAAAAC
** * * *** * *
3248891 GA-TAATGAAAATTATTAGAATTAAATTATGAGTCAAAAAATGAAATTGGCCAAGATCAAAAT-G
64 GACT-A-G----------G-ATTAAACCATGAGTCAAAAAATGAAAATGACTGGGAT-TAAATCA
* * *
3248954 TGAGTTAAAAAATGAAAATGATTGG
115 CGAGTCAAAAAATGAAAATGATAGG
* * * ** * * * *
3248979 AATTAAAGCACGAGTCAGAAAATGAAAATGA-CTAGGAATAAACCCTAAG-CGAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATGAAAACAATC-AGGATTAAA-CATGAGTC-AAAAAATGAAAA
* * * * * * * ** * *
3249042 CCACCAAGATTAAAGCACGAGTCAAAAAAT-AAAA-GCAATTGGAAGGAAATGACAAGTCAAAAA
63 CGACTAGGATTAAACCATGAGTCAAAAAATGAAAATG--ACTGGGATTAAATCACGAGTCAAAAA
** *
3249105 ATGAAAAACAATCGG
126 ATG-AAAATGATAGG
* * * * * * * * *
3249120 GACTATACCACGAGTCAAAAAACGAAAACGACCAGGATTAAATCATGAGTCAATAAATAAAAATG
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAA-CATGAGTCAAAAAATGAAAACG
* * *** * * * * * *
3249185 A-TAGGGATCAAACAATGCA-TTGGAATATGAAAACGA-TAGGGATTAAAGCATGAGTTAGAAAA
65 ACTA-GGATTAAACCATG-AGTCAAAAAATGAAAATGACT-GGGATTAAATCACGAGTCAAAAAA
** *
3249247 TGTAAAACAACAGG
127 TG-AAAATGATAGG
* ** * ** * * *
3249261 GATTAAACCATAAGTCAAAAAGTGAAAATGATC-GAGATTAAACCACGAGTCAGAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAG-GATTAAA-CATGAGTCAAAAAATGAAAAC
* * **** * ** *
3249325 GA-TTGGAATTAAACGATGAGTCAAAAAATGAAAATGACCAACAGTAAATCATAACTCAAAGAAA
64 GACTAGG-ATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAA-AAA
* *
3249389 TAAAAATGATTGG
127 TGAAAATGATAGG
* * * * * * * * * *
3249402 AATCAAATCACAAATCAGAAAAT-AAAACTGA-CTAAGATTAAGCCACT-AGTCAAGAAACGAAA
1 GATTAAATCACGAGTCAAAAAATGAAAAC-AATC-AGGATTAA-ACA-TGAGTCAAAAAATGAAA
* ** * ** * **** ** * *
3249464 AC-AATCAAAATTAAATCACAAGTCAAAAAATAAAAATGACCAAAATTAAATTGCAAGTCTAAAA
62 ACGACT-AGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAA
* * *
3249528 CTAAAAATGATTGG
126 ATGAAAATGATAGG
* * ** ** * * *
3249542 TATTAAACCACGAGTCAGGAAATGAAAACAA-CAGGGATTAAACAACAAGTTAGAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCA-GGATTAAAC-ATGAGTCAAAAAATGAAAAC
* * ** * * ** * **
3249606 GA-TTGAGATGAAACCACCAGTTAGAAAATGAAAAATGA-TCAAGATTAAACCATAAGTCAAAAA
64 GACTAG-GATTAAACCATGAGTCAAAAAATG-AAAATGACT-GGGATTAAATCACGAGTCAAAAA
* **
3249669 ATGAAGACAATAGG
126 ATGAAAATGATAGG
** * ** * ** * ** * * * *
3249683 GATTAAA-CTACGAGTCAGAGGAATAAAAATGACCAAAATTAAGTCACAACTTAGAAAATGGAAA
1 GATTAAATC-ACGAGTCA-AAAAATGAAAACAATCAGGATTAA-ACATGAGTCAAAAAATGAAAA
** * ** *
3249747 CGA--AGGAAATTAAACCACAAGTCAAAATATGAAAATGA-TCGAAATTAAATCACAAGTCAAAA
63 CGACTAGG--ATTAAACCATGAGTCAAAAAATGAAAATGACT-GGGATTAAATCACGAGTCAAAA
* *
3249809 AATAAAAATGATCGG
125 AATGAAAATGATAGG
* * * * ** *
3249824 GATTAAACCACGAGTC-AAAAATAAAAACAACTC-GAATTGAATCATGAACCAAAAAATGAAAAT
1 GATTAAATCACGAGTCAAAAAATGAAAACAA-TCAGGATT-AAACATGAGTCAAAAAATGAAAAC
* * * * * * *
3249887 GACCAGGATTAAACCAT-AGGTCAAAAACCT-AAAATGACTAGGATTAAA-CTATGGGTTAGAAA
64 GACTAGGATTAAACCATGA-GTCAAAAA-ATGAAAATGACTGGGATTAAATC-ACGAGTCAAAAA
* * *
3249949 ATGAAAACGATCGA
126 ATGAAAATGATAGG
* * * * * ** * *
3249963 GATTAAATCATGAGTTAGAAAATGAAAA-TATC-GATATTAAATCACAAGCCAAAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAG-GATTAAA-CATGAGTCAAA-AAATGAAAA
* * * * * * * *
3250026 TGATCCA-AATTAAATCACGAGTTC-AAAAATGAAAACGA-TCGAGATTAAACCACGAGTCAAAA
63 CGA-CTAGGATTAAACCATGAG-TCAAAAAATGAAAATGACT-GGGATTAAATCACGAGTCAAAA
**
3250088 AATGAAAATGATAATAAAAATTATCAA
125 AATGAAAATG---------A-TA--GG
* * * * * * * * *
3250115 AATTAAATTATGAGTTAGAAAATGAAAATGAGT-AGGACTAAACACTGAG-CGAGAAAATGAAAA
1 GATTAAATCACGAGTCAAAAAATGAAAA-CAATCAGGATTAAACA-TGAGTC-AAAAAATGAAAA
* * ** * ** ** *
3250178 CCACTAGGATTAAATCACAAGTCAGAAAATGAAAGCGA-TCAAGATTAAA-CGACGAGTCAGAAA
63 CGACTAGGATTAAACCATGAGTCAAAAAATGAAAATGACT-GGGATTAAATC-ACGAGTCAAAAA
* *
3250241 ATGAAAAACGGCTA-G
126 ATG-AAAA-TGATAGG
* * * * ** *
3250256 GATTATA-CAAGAAATCAAAAAATCAAAATGA-CTAGGATTAAATCATGAGTCAAAAAATAAAAA
1 GATTAAATCACG-AGTCAAAAAATGAAAACAATC-AGGATTAAA-CATGAGTCAAAAAATGAAAA
* * * ** * * * *
3250319 TGACAAGGATTAAACAACA-CA-TTGAAAAATGAAAATGACAGGGATTAAAACATGAATCAAAAA
63 CGACTAGGATTAAAC--CATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAA
*
3250382 ATGTAAAA-AATAGG
126 ATG-AAAATGATAGG
* ** * * * * * * * *
3250396 GATTAAACCATAAGTCAAAAACTAAAAATAA-CTAGGATTAAACCACGAGTTAGAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATGAAAACAATC-AGGATTAAA-CATGAGTCAAAAAATGAAAAC
* * * * * *
3250460 GACCT-GGATTAAATCATG-GGCAAAAAAATG-AAATGACCT-AGATTAAATTATGAGCCAAAAA
64 GA-CTAGGATTAAACCATGAGTC-AAAAAATGAAAATGA-CTGGGATTAAATCACGAGTCAAAAA
* * *
3250521 ATGAAAACGACCA-A
126 ATGAAAATGA-TAGG
* * * * ** * * * * **
3250535 GATTAAACCAGGGGTCAGAAAATGAAAATGATC-GAAATTAAACCATGGGTTAGAAAATGAAATT
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAG-GATTAAA-CATGAGTCAAAAAATGAAAAC
* ** * * * * *
3250599 GAC-AGAGATTAAATCACAAGTCAAAAAATGAAAACGA-TAGGTATTAAATCACAAGCCAGAGAA
64 GACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACT-GGGATTAAATCACGAGTCA-AAAA
* * *
3250662 ATAAAAATGATCGA
126 ATGAAAATGATAGG
* * * * * *
3250676 AATTAAGTCACAAGTCAAAAAATGAAAACGATC-GAGATTAAACCATGAGTTAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAG-GATTAAA-CATGAGTCAAAAAATGAAAAC
* * ** * * * ** *
3250740 AATAATGAAAATTACCGAAATTAAATTATGAGTCAAAAAATAAAAATTA-TCGAGAAAAAAT-GC
64 ------G---ACTA--G-GATTAAACCATGAGTCAAAAAATGAAAATGACT-GGGATTAAATCAC
* * * *
3250803 GAGTTAAAAAACGAAAACGACCA-G
116 GAGTCAAAAAATGAAAATGA-TAGG
* * * * * * * * *
3250827 AATTAAAGCAGGAGTCACAAAAA-GAAAAC-AGCTAGGA-TAAACCCTAAGTGAGAAAATAAAAA
1 GATTAAATCACGAGTCA-AAAAATGAAAACAATC-AGGATTAAA-CATGAGTCAAAAAATGAAAA
* * * ** * * * * *
3250889 CCACCAAGATTAAACCACAAGTCAACAAAT-AAAAGCGATTTGGATTAAAT-AAGAAGTCAAAAA
63 CGACTAGGATTAAACCATGAGTCAAAAAATGAAAA-TGACTGGGATTAAATCACG-AGTCAAAAA
*
3250952 ATGAAAAATGATTGG
126 ATG-AAAATGATAGG
* ** * * *
3250967 GATTATA-CTACGAGTCAAAAAATGAAAATGATCGGGATTAAAGCATGAGTCAAAAAATAAAAAT
1 GATTAAATC-ACGAGTCAAAAAATGAAAACAATCAGGATTAAA-CATGAGTCAAAAAATGAAAAC
* * * ** **
3251031 GA-TAGGGATTAAA-CATGAGTCAGAAAATGTAAAA-CAATGGGGATTAAGCCATAAGTCAAAAA
64 GACTA-GGATTAAACCATGAGTCAAAAAATG-AAAATGACT-GGGATTAAATCACGAGTCAAAAA
* *
3251093 CTG-AAATGACCA--
126 ATGAAAATGA-TAGG
* * * * *** * * * * *
3251105 AATTAAACCACAAGTCCAAAAATGAAAATGTTTAGAATTAAATGATGACTCAAAAAATGAAAATG
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAA-CATGAGTCAAAAAATGAAAACG
* * * * * * **** * * * *
3251170 A-TCGTTATTAAATCATAAGTC-ATAAATAAAAATGACCAAAATCAAATCATGAGTTAGAAAATG
65 ACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAATG
* **
3251233 AAACTGACCGG
129 AAAATGATAGG
* * * * * ** * * * * * *
3251244 GATTAAACCACTACTCAAGAAACGAAAATGA-CTAGAATTAAATCACGAGTTAGAAAATAAAAAT
1 GATTAAATCACGAGTCAAAAAATGAAAACAATC-AGGATTAAA-CATGAGTCAAAAAATGAAAAC
* * * * * *
3251308 GAACGA-AATTAAATCATGAGTC-TAAAATAGAAAATGATTGGGATGAAA-CTACGAGTCAAAAA
64 G-ACTAGGATTAAACCATGAGTCAAAAAAT-GAAAATGACTGGGATTAAATC-ACGAGTCAAAAA
* * *
3251370 ATAAAAATGACAGT
126 ATGAAAATGATAGG
* * * * ** *
3251384 GATTAAA-CTATGAGTTAGAGAAT-AAAATGATC-GAGATGAAACCACT-AGTCAAAAAATGAAA
1 GATTAAATC-ACGAGTCAAAAAATGAAAACAATCAG-GATTAAA-CA-TGAGTCAAAAAATG-AA
* ** * * * * ****
3251445 AATGGTTGGGATTAAACCATGAGTTAGAGAAATAAAAATGACCAAAATTAAATCACGAGTCAAAA
61 AACGACTAGGATTAAACCATGAGTCA-AAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAA
*
3251510 AATAAAAATGACCTA--
125 AATGAAAATGA--TAGG
** ** ** *
3251525 GATTAAATCATAAGTCAAAAAATGAAAATGATTGGGATTAAACCAT-AGGTCAGAAAATGAAAAC
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAA-CATGA-GTCAAAAAATGAAAAC
* * * * *** * * *
3251589 GA-TTGAGATTAAACCATGGGTTAGAAAATGAAAATGACCAAGATTAAATCATGAGTTAGAAAAT
64 GACTAG-GATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAAT
3251653 GAAAA
128 GAAAA
3251658 CAATTGACAT
Statistics
Matches: 5246, Mismatches: 1505, Indels: 890
0.69 0.20 0.12
Matches are distributed among these distances:
127 23 0.00
128 46 0.01
129 22 0.00
132 5 0.00
133 69 0.01
134 20 0.00
135 8 0.00
136 42 0.01
137 65 0.01
138 214 0.04
139 730 0.14
140 1076 0.21
141 1916 0.37
142 353 0.07
143 23 0.00
144 6 0.00
145 7 0.00
146 18 0.00
147 12 0.00
148 16 0.00
149 11 0.00
150 34 0.01
151 101 0.02
152 260 0.05
153 153 0.03
154 14 0.00
155 2 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.20
Consensus pattern (139 bp):
GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAACATGAGTCAAAAAATGAAAACGA
CTAGGATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAATCACGAGTCAAAAAATGAA
AATGATAGG
Found at i:3245404 original size:107 final size:104
Alignment explanation
Indices: 3244369--3246212 Score: 420
Period size: 106 Copynumber: 17.5 Consensus size: 104
3244359 TTAAACAACA
* * * * ** *
3244369 AGTCAAAAAATGAAAATGACCAGGATTCAAGCACGAGTCAAAAAATAAAAATTACAGGGATTAAA
1 AGTCAAAAAATGAAAATGA-CAGGATTAAATCATGAGTCAAAAAATGAAAACAACTGGGATTAAA
* * ** * * * * *
3244434 CAACGTA-TTGAAAAATGAAAACGA-TAGGGATTAAAGCACG
65 CCAC-AAGTCAAAAAATAAAAATGACT-GAGATTAAAACATG
* ** * * ** ***
3244474 AGTCAGAAAATGTAAAACAATGAGGATTAAATCACGAGTCAAAAAATGAAAATGACCAAGATTAA
1 AGTCAAAAAATG-AAAATGA-CAGGATTAAATCATGAGTCAAAAAATGAAAACAACTGGGATTAA
** * ** *
3244539 ACCATGAGTCAAAAAATAAAAATGATTG-GAATTAAATGACG
64 ACCACAAGTCAAAAAATAAAAATGACTGAG-ATTAAAACATG
* * * ** * *
3244580 AGTCAAAAAATGAAAATGACCGGCATTAAATCACGAGTCAAAGAAATAAAAATGA-TGGAAATAG
1 AGTCAAAAAATGAAAATGACAGG-ATTAAATCATGAGTCAAA-AAATGAAAACAACTGGGATTA-
* ** * * * *
3244644 AATCATGAGTCAGAAAATGAAAATGA-TTAGGATTAAACCACT-
63 AACCACAAGTCAAAAAATAAAAATGACTGA-GATTAAAACA-TG
* ** * ** * * * ** **
3244686 AGTCAAGAAACAAAAATGATCAGAATTAAATCACAAGTTAGAAAATAAAAATGACTGAAATTAAA
1 AGTCAAAAAATGAAAATGA-CAGGATTAAATCATGAGTCAAAAAATGAAAACAACTGGGATTAAA
** * * * * * *
3244751 TGACGAGTCTAAAACTGAAAATGACTGGGATTAAACCATG
65 CCACAAGTCAAAAAATAAAAATGACTGAGATTAAAACATG
* * * * * * ** * *
3244791 AATCAAAAAATTAAAACT-ACTGGTATTAAA-CTATGAGTTAGAGAAT-AAAATGA-TCGAGATG
1 AGTCAAAAAATGAAAA-TGACAGG-ATTAAATC-ATGAGTCAAAAAATGAAAACAACT-GGGATT
** * * * * *
3244852 AAACCA-TTG-CAAAAACTAAAAAGCGA-TCGGGATTAAACCATT
62 AAACCACAAGTCAAAAAATAAAAA-TGACT-GAGATTAAAACATG
* ** * * * * * ****
3244894 AGTCAAAAAATGAAGACAACAGGGATTAAACCACGAGTTAGAGAAAT-AAAAAAGACCAAAATTA
1 AGTCAAAAAATGAAAATGACA-GGATTAAATCATGAGTCA-AAAAATGAAAACA-ACTGGGATTA
* * * * *
3244958 AATCATGAA-TCAAAAAATGAAAATGA-TGGGAATTAAACCATG
63 AACCA-CAAGTCAAAAAATAAAAATGACTGAG-ATTAAAACATG
* * ** * * * ***
3245000 AGTCAGAAAATTAAAATGATTGAAATTAAATCACGAGTCAAAAAATAAAAACAACCAAGATTAAA
1 AGTCAAAAAATGAAAATGACAG-GATTAAATCATGAGTCAAAAAATGAAAACAACTGGGATTAAA
*** * * * * **
3245065 CCATGTGTCAAAAAATAAAGACGACTCGA-ACTAAATCACA
65 CCACAAGTCAAAAAATAAAAATGACT-GAGATTAAAACATG
* * * * ** * * * ***
3245105 AGTCAGAAAATGAAAACGAACCA-AACTAAATCACAAGTTAGAAAATGAAAACCACCAAGATTAA
1 AGTCAAAAAATGAAAATG-A-CAGGATTAAATCATGAGTCAAAAAATGAAAACAACTGGGATTAA
** *
3245169 ACCATGAGTCAAAAAATGAAAGCAATTA--G-GATT-AAACGATG
64 ACCACAAGTCAAAAAAT-AAA--AATGACTGAGATTAAAAC-ATG
* * * * *
3245210 AGTTAGAAAATGAAAAACGACTAGGATTATACCATGAGTCAAAAAATGAAAACAACTGGGATTAA
1 AGTCAAAAAATG-AAAATGAC-AGGATTAAATCATGAGTCAAAAAATGAAAACAACTGGGATTAA
* * *
3245275 ATCACGAGTCAAAAAATAAAAATGA-TAGGGATTAAATAACAT-
64 ACCACAAGTCAAAAAATAAAAATGACT-GAGATT-AA-AACATG
3245317 A-TCAAAAAATGAAAATGACAGGGATTAAATCATGAGTCAAGAAAATGTAAAACAA-TAGGGATT
1 AGTCAAAAAATGAAAATGACA-GGATTAAATCATGAGTCAA-AAAATG-AAAACAACT-GGGATT
* * *
3245380 AAACCACAAGTCAAAAAGTGAAAATGACTGAGATTAAACCATG
62 AAACCACAAGTCAAAAAATAAAAATGACTGAGATTAAAACATG
* * * * * ** * *
3245423 AGTCAGAAAATGAAAATGATCAGAATTAAATGACGAGTCAAAAAATGGAAATGA-TCAGCATTAA
1 AGTCAAAAAATGAAAATGA-CAGGATTAAATCATGAGTCAAAAAATGAAAACAACT-GGGATTAA
* * * * * * **
3245487 ATCACGAGTCAAGGAAATAAAAATGACTGAAATCAAATCACA
64 ACCACAAGTCAA-AAAATAAAAATGACTGAGATTAAAACATG
* * * * * ** ** *
3245529 AGTCAGAAAATGAAAATGACCAAGATTAAACCACT-AGTCAAGAAACGAAAATGACCAGAATTAA
1 AGTCAAAAAATGAAAATGA-CAGGATTAAATCA-TGAGTCAAAAAATGAAAACAACTGGGATTAA
* * * ** *
3245593 ATCTCGAGTCAAAAAATAAAAATGACCAAAATTAAATTACA--
64 ACCACAAGTCAAAAAATAAAAATGACTGAGATTAAA--ACATG
* * ** * * * ** *
3245634 AGTCTAAAATTGAAAATGATTGGTACTAAACCACGAGTCAGGAAATGAAAACAACAGGGATTAAA
1 AGTCAAAAAATGAAAATGACAGG-ATTAAATCATGAGTCAAAAAATGAAAACAACTGGGATTAAA
* * * * * * * **
3245699 CCATAAGTTAGAAAATGAAAATGACCGAGATGAAACCACC
65 CCACAAGTCAAAAAATAAAAATGACTGAGATTAAAACATG
* * * * *
3245739 AGTTAAAAAATGAAAAATGATCAAGACTAAACCATGAGTCAAAAAATGAAGACAA-TAGGGATTA
1 AGTCAAAAAATG-AAAATGA-CAGGATTAAATCATGAGTCAAAAAATGAAAACAACT-GGGATTA
* * ** ** * ** *
3245803 AACTACGAGTCAGAGGAATAAAAATGACCAAAATTAAATTAGG
63 AACCACAAGTCA-AAAAATAAAAATGACTGAGATTAAAACATG
* * * ** * ** * ** **
3245846 AGTTAGAAAATGAAAACGATTGGAATTAAACCACAAGTCAAAATATGAAAATGA-TAGAAATTAA
1 AGTCAAAAAATGAAAATGACAGG-ATTAAATCATGAGTCAAAAAATGAAAACAACT-GGGATTAA
* * * * * *
3245910 ATCACGACTCAAAAAATAAAAATGA-TCAGGATTAAAGCATA
64 ACCACAAGTCAAAAAATAAAAATGACTGA-GATTAAAACATG
* ** * * * ** *
3245951 AGTCAAAAAATAAAAACAATTC-GAATTGAATCATGAGCCAAAAAAATGAAAATGA-TAAGGATT
1 AGTCAAAAAATGAAAATGA--CAGGATTAAATCATGAGTC-AAAAAATGAAAACAACT-GGGATT
* * * *
3246014 AAACCATAGGTCAAAAAACT-AAAATGACTGAGATTAAACCGTG
62 AAACCACAAGTCAAAAAA-TAAAAATGACTGAGATTAAAACATG
* * * * * * * * * *
3246057 GGTTAGAAAATGAAAACGACCAAGATTAAATCATGAGTTAGAAAATGAAAATATC-GGTATTAAA
1 AGTCAAAAAATGAAAATGA-CAGGATTAAATCATGAGTCAAAAAATGAAAACAACTGGGATTAAA
* * * * * **
3246121 TCACAAGCCAGAGAAATAAAAATGA-TCGAAATTAAATCACA
65 CCACAAGTCA-AAAAATAAAAATGACT-GAGATTAAAACATG
* * **
3246162 AGTTC-AAAAATGAAAACGATC-GAGATTAAACCACAAGTCAAAAAATGAAAA
1 AG-TCAAAAAATGAAAATGA-CAG-GATTAAATCATGAGTCAAAAAATGAAAA
3246213 TGATAATAAA
Statistics
Matches: 1311, Mismatches: 342, Indels: 172
0.72 0.19 0.09
Matches are distributed among these distances:
102 12 0.01
103 51 0.04
104 53 0.04
105 519 0.40
106 539 0.41
107 126 0.10
108 8 0.01
109 3 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.19
Consensus pattern (104 bp):
AGTCAAAAAATGAAAATGACAGGATTAAATCATGAGTCAAAAAATGAAAACAACTGGGATTAAAC
CACAAGTCAAAAAATAAAAATGACTGAGATTAAAACATG
Found at i:3246287 original size:82 final size:82
Alignment explanation
Indices: 3246135--3246295 Score: 207
Period size: 82 Copynumber: 2.0 Consensus size: 82
3246125 AAGCCAGAGA
* *
3246135 AATAAAAATGATCGAAATTAAATCACAAGTTCAAAAATGAAAACGATCGAGATTAAACCACAAGT
1 AATAAAAATGATCAAAATTAAATCACAAGTTCAAAAATGAAAACGATCGAGATTAAAACACAAGT
3246200 CAAAAAATGAAAATGAT
66 CAAAAAATGAAAATGAT
* ** * * ***
3246217 AATAAAAATTATCAAAATTAAATTGCAAG-TCAGAAAATGAAAATGATCGGGATTAAAACGTGAG
1 AATAAAAATGATCAAAATTAAATCACAAGTTCA-AAAATGAAAACGATCGAGATTAAAACACAAG
*
3246281 TTAAAAAATGAAAAT
65 TCAAAAAATGAAAAT
3246296 TACCAGAATT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
81 3 0.04
82 64 0.96
ACGTcount: A:0.55, C:0.09, G:0.14, T:0.22
Consensus pattern (82 bp):
AATAAAAATGATCAAAATTAAATCACAAGTTCAAAAATGAAAACGATCGAGATTAAAACACAAGT
CAAAAAATGAAAATGAT
Found at i:3246289 original size:35 final size:35
Alignment explanation
Indices: 3246250--3246788 Score: 119
Period size: 35 Copynumber: 15.4 Consensus size: 35
3246240 TGCAAGTCAG
* * * *
3246250 AAAATGAAAATGATCGGGATTAAAACGTGAGTTAA
1 AAAATGAAAATGACCAGAATTAAAACATGAGTTAA
* * *
3246285 AAAATGAAAATTACCAGAATTAAAGCATGAGTTAG
1 AAAATGAAAATGACCAGAATTAAAACATGAGTTAA
* * * * *
3246320 AAAATGAAAATGACTAGGACT-AAACACTGAGTGAG
1 AAAATGAAAATGACCAGAATTAAAACA-TGAGTTAA
** * * * ** *
3246355 AAAATGAAAACCACTAGGATTAAACCACAAGTCAA
1 AAAATGAAAATGACCAGAATTAAAACATGAGTTAA
*** * ** * *
3246390 AAAATGAAAGCAATCA-AGATTAAATGATGAGTCAG
1 AAAATGAAAATGACCAGA-ATTAAAACATGAGTTAA
* * * * * * *
3246425 AAAATGAAAAACGACTAGGATT-ATACAATAAATCAA
1 AAAATG-AAAATGACCAGAATTAAAAC-ATGAGTTAA
* * * *
3246461 AAAATGAAAATGACTAGGATTAAATCATGAGTCAA
1 AAAATGAAAATGACCAGAATTAAAACATGAGTTAA
* * * *
3246496 AAAATTAAAATGACAAGGATTAAACAACA-CA-TTGAA
1 AAAATGAAAATGACCAGAATT-AA-AACATGAGTT-AA
* * * *
3246532 AAAA-GAAAATGA-CAGGGATTAAAACATGAATCAG
1 AAAATGAAAATGACCA-GAATTAAAACATGAGTTAA
** *** * * * *
3246566 AAAATGTAAAACAATGGGGATTAAACCATAAGTCAA
1 AAAATG-AAAATGACCAGAATTAAAACATGAGTTAA
* * * * *
3246602 AAAGTGAAAATGACCAAAATTAAACCACGAGTCAA
1 AAAATGAAAATGACCAGAATTAAAACATGAGTTAA
* ** * * *
3246637 AAAATGAAAACGATTAGGATTAAATCACGAG-TAA
1 AAAATGAAAATGACCAGAATTAAAACATGAGTTAA
* * * * * * * *
3246671 GAAAATAAAAACGACTAGGATTAAACCACGAGTCAG
1 -AAAATGAAAATGACCAGAATTAAAACATGAGTTAA
* ** ** * **
3246707 AAAATAAAAATGACTTGGGTTAAATCAT-AGGCAAA
1 AAAATGAAAATGACCAGAATTAAAACATGA-GTTAA
* **
3246742 AAAATG-AAATGACCCAG-ATTAAATCATGAGCCAA
1 AAAATGAAAATGA-CCAGAATTAAAACATGAGTTAA
3246776 AAAATGAAAATGA
1 AAAATGAAAATGA
3246789 TTAAACTAGG
Statistics
Matches: 381, Mismatches: 101, Indels: 44
0.72 0.19 0.08
Matches are distributed among these distances:
33 4 0.01
34 41 0.11
35 271 0.71
36 62 0.16
37 3 0.01
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (35 bp):
AAAATGAAAATGACCAGAATTAAAACATGAGTTAA
Found at i:3246517 original size:106 final size:105
Alignment explanation
Indices: 3246250--3246519 Score: 258
Period size: 106 Copynumber: 2.6 Consensus size: 105
3246240 TGCAAGTCAG
* * * * * *
3246250 AAAATGAAAATGA-TCGGGATTAAAACGTGAGTTAAAAAATGAAAATTACCAGAATTAAAGCATG
1 AAAATGAAAATGACT-AGGATTAAAACATGAGTCAAAAAATGAAAATAACAAGGATTAAAGCATG
* * * * * * *
3246314 AGTTAGAAAATGAAAATGACTAGGACTAAACACTGAGTGAG
65 AGTCAGAAAATGAAAACGACTAGGACTAAACAATAAATCAA
** * ** **
3246355 AAAATGAAAACCACTAGGATTAAACCACAAGTCAAAAAATGAAAGCAATCAA-GATTAAATG-AT
1 AAAATGAAAATGACTAGGATTAAAACATGAGTCAAAAAATGAAAATAA-CAAGGATTAAA-GCAT
* *
3246418 GAGTCAGAAAATGAAAAACGACTAGGATTATACAATAAATCAA
64 GAGTCAGAAAATG-AAAACGACTAGGACTAAACAATAAATCAA
* * *
3246461 AAAATGAAAATGACTAGGATTAAATCATGAGTCAAAAAATTAAAATGACAAGGATTAAA
1 AAAATGAAAATGACTAGGATTAAAACATGAGTCAAAAAATGAAAATAACAAGGATTAAA
3246520 CAACACATTG
Statistics
Matches: 129, Mismatches: 31, Indels: 9
0.76 0.18 0.05
Matches are distributed among these distances:
105 58 0.45
106 71 0.55
ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20
Consensus pattern (105 bp):
AAAATGAAAATGACTAGGATTAAAACATGAGTCAAAAAATGAAAATAACAAGGATTAAAGCATGA
GTCAGAAAATGAAAACGACTAGGACTAAACAATAAATCAA
Found at i:3246808 original size:29 final size:29
Alignment explanation
Indices: 3246776--3246853 Score: 84
Period size: 35 Copynumber: 2.5 Consensus size: 29
3246766 CATGAGCCAA
*
3246776 AAAATGAAAATGATTAAACTAGGGGTTAG
1 AAAATGAAAATGATTAAACCAGGGGTTAG
*
3246805 AAAATGAAAACGATTGAAATTAAACCATGGGTTAG
1 AAAATG-AAA--A-TG--ATTAAACCAGGGGTTAG
3246840 AAAATGAAAATGAT
1 AAAATGAAAATGAT
3246854 CGAGATTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
29 8 0.20
30 3 0.07
31 2 0.05
32 2 0.05
33 2 0.05
34 3 0.07
35 21 0.51
ACGTcount: A:0.51, C:0.05, G:0.21, T:0.23
Consensus pattern (29 bp):
AAAATGAAAATGATTAAACCAGGGGTTAG
Found at i:3246837 original size:35 final size:35
Alignment explanation
Indices: 3246788--3246868 Score: 108
Period size: 35 Copynumber: 2.3 Consensus size: 35
3246778 AATGAAAATG
* * *
3246788 ATTAAACTAGGGGTTAGAAAATGAAAACGATTGAA
1 ATTAAACCATGGGTTAGAAAATGAAAACGATCGAA
* *
3246823 ATTAAACCATGGGTTAGAAAATGAAAATGATCGAG
1 ATTAAACCATGGGTTAGAAAATGAAAACGATCGAA
*
3246858 ATTAAATCATG
1 ATTAAACCATG
3246869 AGTCAGTCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.47, C:0.07, G:0.21, T:0.25
Consensus pattern (35 bp):
ATTAAACCATGGGTTAGAAAATGAAAACGATCGAA
Found at i:3247168 original size:35 final size:35
Alignment explanation
Indices: 3247061--3247294 Score: 145
Period size: 35 Copynumber: 6.8 Consensus size: 35
3247051 AATGCGTGTT
* * * * *
3247061 AAAAAATTAAAACGACTAGAATTAAAGCGCGAGT-
1 AAAAAATAAAAACGACCAGGATTAAACCACGAGTC
* * * *
3247095 -AAAAA-AAAAACGGCTAGGA-TAAACC-CTAAGTG
1 AAAAAATAAAAACGACCAGGATTAAACCAC-GAGTC
* * *
3247127 AGAAAATAAAAACCACCAAGATTAAACCACGAGTC
1 AAAAAATAAAAACGACCAGGATTAAACCACGAGTC
* * ** * *
3247162 AAAAAATGAAAGCGATTAGGATTAAACAACAAGTC
1 AAAAAATAAAAACGACCAGGATTAAACCACGAGTC
* * * *
3247197 AGAAAATGAAAAACGACCAGGATTATACTATGAGTC
1 AAAAAAT-AAAAACGACCAGGATTAAACCACGAGTC
* * * * *
3247233 AAAAAATGAAAATGATCGGGATTAAAGCACGAGTC
1 AAAAAATAAAAACGACCAGGATTAAACCACGAGTC
* **
3247268 AAAAAATAAAAATGATAAGGATTAAAC
1 AAAAAATAAAAACGACCAGGATTAAAC
3247295 AAGGCATCGA
Statistics
Matches: 150, Mismatches: 43, Indels: 13
0.73 0.21 0.06
Matches are distributed among these distances:
30 1 0.01
31 8 0.05
32 11 0.07
33 9 0.06
34 10 0.07
35 84 0.56
36 27 0.18
ACGTcount: A:0.53, C:0.13, G:0.17, T:0.16
Consensus pattern (35 bp):
AAAAAATAAAAACGACCAGGATTAAACCACGAGTC
Found at i:3247342 original size:35 final size:34
Alignment explanation
Indices: 3247146--3247765 Score: 246
Period size: 35 Copynumber: 17.7 Consensus size: 34
3247136 AAACCACCAA
* **
3247146 GATTAAACCACGAGTCAAAAAATGAAAGCGATTA-G
1 GATTAAA-CATGAGTCAAAAAATGAAAATGA-TAGG
** * * *
3247181 GATTAAACAACAAGTCAGAAAATGAAAAACGACCA-G
1 GATTAAAC-ATGAGTCAAAAAATG-AAAATGA-TAGG
* *
3247217 GATTATACTATGAGTCAAAAAATGAAAATGATCGG
1 GATTAAAC-ATGAGTCAAAAAATGAAAATGATAGG
* * *
3247252 GATTAAAGCACGAGTCAAAAAATAAAAATGATAAG
1 GATTAAA-CATGAGTCAAAAAATGAAAATGATAGG
* *
3247287 GATTAAACAAG-GCATCGAAAAATGAAAATGATAGG
1 GATTAAACATGAG--TCAAAAAATGAAAATGATAGG
* * ** *
3247322 GATTCAACATGAGTCAGAAAATGTAAAACAATGGG
1 GATTAAACATGAGTCAAAAAATG-AAAATGATAGG
* ** * *
3247357 GATTAAGCCACAAGTTAAAAACTGAAAATGAT-GG
1 GATTAA-ACATGAGTCAAAAAATGAAAATGATAGG
* * *
3247391 AGATTAAACCACGAGTGAAAAAATGAAAATGTTCA-G
1 -GATTAAA-CATGAGTCAAAAAATGAAAATGAT-AGG
* * * *
3247427 AATTAAATGATGACTCAAAAAATGAAAATGACAGG
1 GATTAAA-CATGAGTCAAAAAATGAAAATGATAGG
* * *
3247462 CATTAAATCATAAGTC-AAAAATAAAAATGACTA-G
1 GATTAAA-CATGAGTCAAAAAATGAAAATGA-TAGG
* * * * *
3247496 AATCAAATCATGAGTTACAAAATGAAAATG-TCTGG
1 GATTAAA-CATGAGTCAAAAAATGAAAATGAT-AGG
* * * *
3247531 GATTAAACCACT-ATTTAAGAAATGAAAACGACTA-G
1 GATTAAA-CA-TGAGTCAAAAAATGAAAATGA-TAGG
* * * **
3247566 AATTAAATCATGAGTTAGAAAA-GAAAAATGA-ACAA
1 GATTAAA-CATGAGTCAAAAAATG-AAAATGATA-GG
* * * * *
3247601 AATTAAATCACGAGTCTAAAACTGAAAATGAT-TG
1 GATTAAA-CATGAGTCAAAAAATGAAAATGATAGG
** *
3247635 GATTAAACCACAAGTCAAAAAATTAAAATGATAGG
1 GATTAAA-CATGAGTCAAAAAATGAAAATGATAGG
* * * * *
3247670 GATTAAACTATGAGTTAGAGAAT-AAAATAACT-GA
1 GATTAAAC-ATGAGTCAAAAAATGAAAATGA-TAGG
* *
3247704 GATGAAACCACT-AGTCAAAAAATGAAAAATGATCGG
1 GATTAAA-CA-TGAGTCAAAAAATG-AAAATGATAGG
*
3247740 GATTAAACCATGAGTCAGAAAATGAA
1 GATTAAA-CATGAGTCAAAAAATGAA
3247766 GACAACGAGG
Statistics
Matches: 441, Mismatches: 108, Indels: 72
0.71 0.17 0.12
Matches are distributed among these distances:
33 3 0.01
34 92 0.21
35 275 0.62
36 70 0.16
37 1 0.00
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (34 bp):
GATTAAACATGAGTCAAAAAATGAAAATGATAGG
Done.