Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 27 of 93
Found at i:3247592 original size:34 final size:35
Alignment explanation
Indices: 3247369--3247832 Score: 170
Period size: 35 Copynumber: 13.3 Consensus size: 35
3247359 TTAAGCCACA
* * *
3247369 AGTTA-AAAACTGAAAATGA-TGGAGATTAAACCACG
1 AGTTAGAAAA-TGAAAATGACTAGA-ATTAAATCATG
* * * *
3247404 AGTGAAAAAATGAAAATG-TTCAGAATTAAATGATG
1 AGTTAGAAAATGAAAATGACT-AGAATTAAATCATG
* * * * *
3247439 ACTCAAAAAATGAAAATGAC-AGGCATTAAATCATA
1 AGTTAGAAAATGAAAATGACTA-GAATTAAATCATG
* * *
3247474 AGTCA-AAAATAAAAATGACTAGAATCAAATCATG
1 AGTTAGAAAATGAAAATGACTAGAATTAAATCATG
* * * * *
3247508 AGTTACAAAATGAAAATGTCTGGGATTAAACCACT-
1 AGTTAGAAAATGAAAATGACTAGAATTAAATCA-TG
* *
3247543 ATTTA-AGAAATGAAAACGACTAGAATTAAATCATG
1 AGTTAGA-AAATGAAAATGACTAGAATTAAATCATG
* *
3247578 AGTTAGAAAA-GAAAAATGAAC-AAAATTAAATCACG
1 AGTTAGAAAATG-AAAATG-ACTAGAATTAAATCATG
* * * * **
3247613 AGTCTA-AAACTGAAAATGA-TTGGATTAAACCACA
1 AGT-TAGAAAATGAAAATGACTAGAATTAAATCATG
* * * *
3247647 AGTCAAAAAATTAAAATGA-TAGGGATTAAA-CTATG
1 AGTTAGAAAATGAAAATGACTA-GAATTAAATC-ATG
* * * *
3247682 AGTTAGAGAAT-AAAATAACT-GAGATGAAACCACT-
1 AGTTAGAAAATGAAAATGACTAGA-ATTAAATCA-TG
* * * * *
3247716 AGTCAAAAAATGAAAAATGA-TCGGGATTAAACCATG
1 AGTTAGAAAATG-AAAATGACT-AGAATTAAATCATG
* * ** * * *
3247752 AGTCAGAAAATGAAGACAACGAGGATTAAACCATG
1 AGTTAGAAAATGAAAATGACTAGAATTAAATCATG
* * * *
3247787 AGTTAGAGAAATAAAAATAACCATAATTAAATCATG
1 AGTTAGA-AAATGAAAATGACTAGAATTAAATCATG
*
3247823 AGTCAGAAAA
1 AGTTAGAAAA
3247833 GATTAAACCA
Statistics
Matches: 327, Mismatches: 72, Indels: 60
0.71 0.16 0.13
Matches are distributed among these distances:
33 2 0.01
34 77 0.24
35 182 0.56
36 65 0.20
37 1 0.00
ACGTcount: A:0.52, C:0.11, G:0.16, T:0.22
Consensus pattern (35 bp):
AGTTAGAAAATGAAAATGACTAGAATTAAATCATG
Found at i:3247675 original size:104 final size:105
Alignment explanation
Indices: 3247441--3247765 Score: 263
Period size: 104 Copynumber: 3.1 Consensus size: 105
3247431 AAATGATGAC
* * * * * *
3247441 TCAAAAAATGAAAATGACAGGCATTAAATCATAAGTCA-AAAATAAAAATGACTAGAATCAAATC
1 TCAAAAAATGAAAATGATAGGAATTAAATCATGAGTTAGAAAAGAAAAATGACTAAAATCAAATC
* * *
3247505 ATGAGTTACAAAATGAAAATGTCTGGGATTAAACCACTAT
66 ACGAGTTACAAAATGAAAATGTCTGGGATTAAACCACAAG
* * * *
3247545 TTAAGAAATGAAAACGACTA-GAATTAAATCATGAGTTAGAAAAGAAAAATGAAC-AAAATTAAA
1 TCAAAAAATGAAAATGA-TAGGAATTAAATCATGAGTTAGAAAAGAAAAATG-ACTAAAATCAAA
*
3247608 TCACGAGTCTA-AAACTGAAAATGAT-T-GGATTAAACCACAAG
64 TCACGAGT-TACAAAATGAAAATG-TCTGGGATTAAACCACAAG
* * * * * * * * *
3247649 TCAAAAAATTAAAATGATAGGGATTAAA-CTATGAGTTAGAGAA-TAAAATAACTGAGATGAAAC
1 TCAAAAAATGAAAATGATAGGAATTAAATC-ATGAGTTAGAAAAGAAAAATGACTAAAATCAAAT
* * * **
3247712 CACTAGTCAAAAAATGAAAAATGATC-GGGATTAAACCATGAG
65 CACGAGTTACAAAATG-AAAATG-TCTGGGATTAAACCACAAG
*
3247754 TCAGAAAATGAA
1 TCAAAAAATGAA
3247766 GACAACGAGG
Statistics
Matches: 176, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
102 3 0.02
103 25 0.14
104 82 0.47
105 61 0.35
106 5 0.03
ACGTcount: A:0.52, C:0.11, G:0.16, T:0.22
Consensus pattern (105 bp):
TCAAAAAATGAAAATGATAGGAATTAAATCATGAGTTAGAAAAGAAAAATGACTAAAATCAAATC
ACGAGTTACAAAATGAAAATGTCTGGGATTAAACCACAAG
Found at i:3247785 original size:35 final size:35
Alignment explanation
Indices: 3247739--3247832 Score: 107
Period size: 36 Copynumber: 2.7 Consensus size: 35
3247729 AAAATGATCG
* * *
3247739 GGATTAAACCATGAGTCAGAAAATGAAGACAACGA
1 GGATTAAACCATGAGTCAGAAAATAAAAACAACCA
* *
3247774 GGATTAAACCATGAGTTAGAGAAATAAAAATAACCA
1 GGATTAAACCATGAGTCAGA-AAATAAAAACAACCA
** *
3247810 TAATTAAATCATGAGTCAGAAAA
1 GGATTAAACCATGAGTCAGAAAA
3247833 GATTAAACCA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
35 22 0.45
36 27 0.55
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (35 bp):
GGATTAAACCATGAGTCAGAAAATAAAAACAACCA
Found at i:3247837 original size:22 final size:22
Alignment explanation
Indices: 3247812--3247854 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
3247802 AATAACCATA
*
3247812 ATTAAATCATGAGTCAGAAAAG
1 ATTAAACCATGAGTCAGAAAAG
*
3247834 ATTAAACCATGTGTCAGAAAA
1 ATTAAACCATGAGTCAGAAAA
3247855 TAAAAATGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.23
Consensus pattern (22 bp):
ATTAAACCATGAGTCAGAAAAG
Found at i:3247873 original size:35 final size:36
Alignment explanation
Indices: 3247833--3248889 Score: 305
Period size: 35 Copynumber: 29.8 Consensus size: 36
3247823 AGTCAGAAAA
* *
3247833 GATTAAACCATGTGTCAGAAAATAAAAATGACTT-G
1 GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* **
3247868 GATTAAATCACAAGTCAGAAAATGAAAATGA-TTAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* * **
3247903 GATTAAACCATGGGTCAAAAAATGAAAATGACCGA-
1 GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* * * * *
3247938 GATTGAACCATTG-GTTAGAAAATGAAAACGAC-CAA
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGACTTAG
* * * *
3247973 GATTAAATCATGAGTTAGAAAATGAAAACGA-TCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* * * *
3248008 CATTAAATCATAAG-CTAGAAAAGTAAAAATGA-TT-G
1 GATTAAACCATGAGTC-AGAAAA-TGAAAATGACTTAG
* * * *
3248043 AAATTAAATCATGAGTCAGAAAATGAAAA-CAATT-G
1 -GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* ** * *
3248078 AGATTAAATCACAAGTCAGAAAATGAAAAAAATAATGAAAATGACTG
1 -GATTAAACCATGAGTCAGAAAATG-----AA-AATG--ACTTA--G
* * ** **
3248125 AAATTATATTATGAGTCAGAAAATGAAAATGA-TCGG
1 -GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* *
3248161 GATTAAGA--AGTGAGTTAAAAAATG-AAATGAC-T-G
1 GATTAA-ACCA-TGAGTCAGAAAATGAAAATGACTTAG
** *
3248194 GAATTAAAGTATGAGTCAGAAAATGAAAATGA-TTCG
1 G-ATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* * ** *
3248230 GACTAAACCCT-AAACGAGAAAATGAAAACT-A-GTAG
1 GATTAAACCATGAGTC-AGAAAATGAAAA-TGACTTAG
** ** *
3248265 GATTAAACCACAAGTCAGAAAATGAAAGCGA--TCG
1 GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* *
3248299 ACATTAAACGATGAGTCAGAAAATGAAAAATGAC-TAG
1 -GATTAAACCATGAGTCAGAAAATG-AAAATGACTTAG
* * * * *
3248336 GATTATACCACGAATCAAAAAATGAAAATGACTGA-
1 GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* * *
3248371 GATTAAATCATGAGTCAAAAAATAAAAATGAC--AGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGACTTA-G
* *
3248406 GATTAAACAACAT-ATTGA-AAAATGAAAATGAC--AGG
1 GATTAAAC--CATGAGTCAGAAAATGAAAATGACTTA-G
* * * * **
3248441 GATTAAAGCACGAGTCAGAAAATGTAAAA-CAATGGG
1 GATTAAACCATGAGTCAGAAAATG-AAAATGACTTAG
** * *
3248477 GATTAAACCACAAGTCA-AAAAGTGAAAATGA-TCAA
1 GATTAAACCATGAGTCAGAAAA-TGAAAATGACTTAG
* * * **
3248512 GATTAAACCATGTGTCAAAAAATGAAAACGACCGA-
1 GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* * * * * *
3248547 GATTAAATCATGAGTTAGAAAATAAAAACGAC-CAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
** * *
3248582 GATTAAACCACAAGTCAGAAAATAAAAATAACTCT--
1 GATTAAACCATGAGTCAGAAAATGAAAATGACT-TAG
* * **
3248617 GATTAAATCACA-G-GCCAAAAAATG-AAATGAC-CCG
1 GATTAAA-C-CATGAGTCAGAAAATGAAAATGACTTAG
* * * ** * *
3248651 GATTACATCATG-GGCTAGAAAATGAAAACAAC-CAA
1 GATTAAACCATGAGTC-AGAAAATGAAAATGACTTAG
*
3248686 GATTAAACCATGGGTCAGAAAATGAAAATGAC--AG
1 GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* * **
3248720 AGATTAAACCATGGGTTAGAAAATGAAAGCGA-TT-G
1 -GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* * *
3248755 AGATTAAATCACGAGTCAAAAAATGAAAATGA--TAG
1 -GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* ** * * *
3248790 GTATTAAATCACAAG-CTAGAGAAATAAAAATGA-TCAA
1 G-ATTAAACCATGAGTC-AGA-AAATGAAAATGACTTAG
* * * *
3248827 AATTAAATCACGAGTCAAAAAATGAAAATGA-TT-G
1 GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
* *
3248861 AGATTAAACCACGAGTCAAAAAATGAAAA
1 -GATTAAACCATGAGTCAGAAAATGAAAA
3248890 CGATAATGAA
Statistics
Matches: 785, Mismatches: 163, Indels: 148
0.72 0.15 0.14
Matches are distributed among these distances:
32 2 0.00
33 9 0.01
34 61 0.08
35 548 0.70
36 119 0.15
37 10 0.01
38 1 0.00
39 1 0.00
40 2 0.00
41 6 0.01
42 2 0.00
44 3 0.00
47 21 0.03
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (36 bp):
GATTAAACCATGAGTCAGAAAATGAAAATGACTTAG
Found at i:3247873 original size:57 final size:58
Alignment explanation
Indices: 3247775--3247889 Score: 144
Period size: 57 Copynumber: 2.0 Consensus size: 58
3247765 AGACAACGAG
* **
3247775 GATTAAACCATGAGTTAGAGAAATAAAAATAACCATAATTAAATCATGAGTCAGAAAA
1 GATTAAACCATGAGTCAGAGAAATAAAAATAACCATAATTAAATCACAAGTCAGAAAA
* * * *
3247833 GATTAAACCATGTGTCAGA-AAATAAAAATGA-CTTGGATTAAATCACAAGTCAGAAAA
1 GATTAAACCATGAGTCAGAGAAATAAAAATAACCAT-AATTAAATCACAAGTCAGAAAA
3247890 TGAAAATGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
56 2 0.04
57 30 0.61
58 17 0.35
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.23
Consensus pattern (58 bp):
GATTAAACCATGAGTCAGAGAAATAAAAATAACCATAATTAAATCACAAGTCAGAAAA
Found at i:3247979 original size:233 final size:232
Alignment explanation
Indices: 3247625--3248065 Score: 516
Period size: 233 Copynumber: 1.9 Consensus size: 232
3247615 TCTAAAACTG
* * * * *
3247625 AAAATGATTGGATTAAACCACAAGTCAAAAAATTAAAATGATAGGGATTAAACTATGAGTTAGAG
1 AAAATGATTGGATTAAACCACAAGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAA
* * * **
3247690 AATAAAATAACTGAGATGAAACCACTAGTCAAAAAATGAAAAATGATCGGGATTAAACCATGAGT
66 AATAAAATAACCGAGATGAAACCACTAGTCAAAAAATGAAAAACGACCAAGATTAAACCATGAGT
* * * *
3247755 CAGAAAATGAAGAC-AACGAGGATTAAACCATGAGTTAGAGAAA-TAAAAAT-AACCATAATTAA
131 CAGAAAATGAAAACGAAC-AGCATTAAACCATAAGCTAGA-AAAGTAAAAATGAACCA-AATTAA
3247817 ATCATGAGTCAGAAAAGATTAAACCATGTGTCAGAAAATA
193 ATCATGAGTCAGAAAAGATTAAACCATGTGTCAGAAAATA
* * *
3247857 AAAATGACTTGGATTAAATCACAAGTCAGAAAATGAAAATGATTA-GGATTAAACCATGGGTCAA
1 AAAATGA-TTGGATTAAACCACAAGTCAAAAAATGAAAATGA-TAGGGATTAAACCATGAGTCAA
* * * * * *
3247921 AAAATGAAAATGACCGAGATTG-AACCATTGGTTAGAAAATG-AAAACGACCAAGATTAAATCAT
64 AAAAT-AAAATAACCGAGA-TGAAACCACTAGTCAAAAAATGAAAAACGACCAAGATTAAACCAT
* * * ***
3247984 GAGTTAGAAAATGAAAACGATCAGCATTAAATCATAAGCTAGAAAAGTAAAAATGATTGAAATTA
127 GAGTCAGAAAATGAAAACGAACAGCATTAAACCATAAGCTAGAAAAGTAAAAATGAACCAAATTA
3248049 AATCATGAGTCAGAAAA
192 AATCATGAGTCAGAAAA
3248066 TGAAAACAAT
Statistics
Matches: 173, Mismatches: 29, Indels: 13
0.80 0.13 0.06
Matches are distributed among these distances:
232 10 0.06
233 129 0.75
234 32 0.18
235 2 0.01
ACGTcount: A:0.50, C:0.11, G:0.17, T:0.22
Consensus pattern (232 bp):
AAAATGATTGGATTAAACCACAAGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAA
AATAAAATAACCGAGATGAAACCACTAGTCAAAAAATGAAAAACGACCAAGATTAAACCATGAGT
CAGAAAATGAAAACGAACAGCATTAAACCATAAGCTAGAAAAGTAAAAATGAACCAAATTAAATC
ATGAGTCAGAAAAGATTAAACCATGTGTCAGAAAATA
Found at i:3248692 original size:104 final size:105
Alignment explanation
Indices: 3248477--3248765 Score: 286
Period size: 104 Copynumber: 2.8 Consensus size: 105
3248467 AAACAATGGG
* *
3248477 GATTAAACCACAAGTCA-AAAAGTGAAAATGATCAAGATTAAACCATGTGTCAAAAAATGAAAAC
1 GATTAAACCACAAGTCAGAAAA-TGAAAATAATCAAGATTAAACCATGTGCCAAAAAATGAAAAC
* *
3248541 GACCGAGATTAAATCATGAGTTAGAAAATAAAAACGACCAA
65 GACCGAGATTAAATCATGAGCTAGAAAATAAAAACAACCAA
* *
3248582 GATTAAACCACAAGTCAGAAAATAAAAATAACTC-TGATTAAATCACA-G-GCCAAAAAATG-AA
1 GATTAAACCACAAGTCAGAAAATGAAAATAA-TCAAGATTAAA-C-CATGTGCCAAAAAATGAAA
* * * *
3248643 ATGACCCG-GATTACATCATGGGCTAGAAAATGAAAACAACCAA
63 ACGA-CCGAGATTAAATCATGAGCTAGAAAATAAAAACAACCAA
*** * * ** * *
3248686 GATTAAACCATGGGTCAGAAAATGAAAATGA-CAGAGATTAAACCATGGGTTAGAAAATGAAAGC
1 GATTAAACCACAAGTCAGAAAATGAAAATAATCA-AGATTAAACCATGTGCCAAAAAATGAAAAC
**
3248750 GATTGAGATTAAATCA
65 GACCGAGATTAAATCA
3248766 CGAGTCAAAA
Statistics
Matches: 149, Mismatches: 24, Indels: 22
0.76 0.12 0.11
Matches are distributed among these distances:
102 3 0.02
103 2 0.01
104 77 0.52
105 57 0.38
106 8 0.05
107 2 0.01
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.19
Consensus pattern (105 bp):
GATTAAACCACAAGTCAGAAAATGAAAATAATCAAGATTAAACCATGTGCCAAAAAATGAAAACG
ACCGAGATTAAATCATGAGCTAGAAAATAAAAACAACCAA
Found at i:3249312 original size:35 final size:34
Alignment explanation
Indices: 3249261--3250099 Score: 289
Period size: 35 Copynumber: 23.9 Consensus size: 34
3249251 AAACAACAGG
*
3249261 GATTAAACCATAAGTCAAAAAGTGAAAATGATCGA
1 GATTAAACCACAAGTCAAAAA-TGAAAATGATCGA
* *
3249296 GATTAAACCACGAGTCAGAAAATGAAAATGATTG-
1 GATTAAACCACAAGTCA-AAAATGAAAATGATCGA
* ** * *
3249330 GAATTAAACGATGAGTCAAAAAATGAAAATGACCAA
1 G-ATTAAACCACAAGTC-AAAAATGAAAATGATCGA
* * * * * * *
3249366 CAGTAAATCATAACTCAAAGAAATAAAAATGATTG-
1 GATTAAACCACAAGTC-AA-AAATGAAAATGATCGA
* * * *
3249401 GAATCAAATCACAAATCAGAAAAT-AAAACTGA-CTAA
1 G-ATTAAACCACAAGTCA-AAAATGAAAA-TGATC-GA
* * * ** *
3249437 GATTAAGCCACTAGTCAAGAAACGAAAACAATCAA
1 GATTAAACCACAAGTCAA-AAATGAAAATGATCGA
* * * * *
3249472 AATTAAATCACAAGTCAAAAAATAAAAATGACCAA
1 GATTAAACCACAAGTC-AAAAATGAAAATGATCGA
* *** * * *
3249507 AATTAAATTGCAAGTCTAAAACTAAAAATGATTG-
1 GATTAAACCACAAGTC-AAAAATGAAAATGATCGA
* * * * *
3249541 GTATTAAACCACGAGTCAGGAAATGAAAA-CAACAGG
1 G-ATTAAACCACAAGTCA-AAAATGAAAATGATC-GA
* * *
3249577 GATTAAACAACAAGTTAGAAAATGAAAATGATTGA
1 GATTAAACCACAAGTCA-AAAATGAAAATGATCGA
* * * *
3249612 GATGAAACCACCAGTTAGAAAATGAAAAATGATCAA
1 GATTAAACCACAAGTCA-AAAATG-AAAATGATCGA
* * ** * *
3249648 GATTAAACCATAAGTCAAAAAATGAAGACAATAGG
1 GATTAAACCACAAGTC-AAAAATGAAAATGATCGA
* * * * * *
3249683 GATTAAACTACGAGTCAGAGGAATAAAAATGACCAA
1 GATTAAACCACAAGTCA-A-AAATGAAAATGATCGA
* ** * * * * **
3249719 AATTAAGTCACAACTTAGAAAATGGAAACGAAGGA
1 GATTAAACCACAAGTCA-AAAATGAAAATGATCGA
*
3249754 AATTAAACCACAAGTCAAAATATGAAAATGATCGA
1 GATTAAACCACAAGTCAAAA-ATGAAAATGATCGA
* * * *
3249789 AATTAAATCACAAGTCAAAAAATAAAAATGATCGG
1 GATTAAACCACAAGTC-AAAAATGAAAATGATCGA
* * **
3249824 GATTAAACCACGAGTCAAAAATAAAAACAACTCGA
1 GATTAAACCACAAGTCAAAAATGAAAATGA-TCGA
* * * * *
3249859 -ATTGAATCATGAA-CCAAAAAATGAAAATGA-CCA
1 GATTAAACCA-CAAGTC-AAAAATGAAAATGATCGA
* * *
3249892 GGATTAAACCATAGGTCAAAAACCT-AAAATGA-CTA
1 -GATTAAACCACAAGTCAAAAA--TGAAAATGATCGA
* *** * *
3249927 GGATTAAACTATGGGTTAGAAAATGAAAACGATCGA
1 -GATTAAACCACAAGTCA-AAAATGAAAATGATCGA
* ** *
3249963 GATTAAATCATGAGTTAGAAAATGAAAAT-ATCGA
1 GATTAAACCACAAGTCA-AAAATGAAAATGATCGA
* * * * *
3249997 TATTAAATCACAAGCCAAAGAAATAAAAATGATCCA
1 GATTAAACCACAAGTC-AA-AAATGAAAATGATCGA
* * * *
3250033 AATTAAATCACGAGTTCAAAAATGAAAACGATCGA
1 GATTAAACCACAAG-TCAAAAATGAAAATGATCGA
*
3250068 GATTAAACCACGAGTCAAAAAATGAAAATGAT
1 GATTAAACCACAAGTC-AAAAATGAAAATGAT
3250100 AATAAAAATT
Statistics
Matches: 597, Mismatches: 166, Indels: 82
0.71 0.20 0.10
Matches are distributed among these distances:
33 2 0.00
34 58 0.10
35 422 0.71
36 113 0.19
37 2 0.00
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (34 bp):
GATTAAACCACAAGTCAAAAATGAAAATGATCGA
Found at i:3250205 original size:35 final size:35
Alignment explanation
Indices: 3250131--3250472 Score: 132
Period size: 35 Copynumber: 9.7 Consensus size: 35
3250121 ATTATGAGTT
* * * *
3250131 AGAAAATGAAAATGAGTAGGACTAAAC-ACTGAG-C
1 AGAAAATGAAAACGACTAGGATTAAACAAC-AAGTC
*
3250165 GAGAAAATGAAAACCACTAGGATTAAATC-ACAAGTC
1 -AGAAAATGAAAACGACTAGGATTAAA-CAACAAGTC
* * * *
3250201 AGAAAATGAAAGCGA-TCAAGATTAAACGACGAGTC
1 AGAAAATGAAAACGACT-AGGATTAAACAACAAGTC
* * * *
3250236 AGAAAATGAAAAACGGCTAGGATTATACAAGAAATC
1 AGAAAATG-AAAACGACTAGGATTAAACAACAAGTC
* * * **
3250272 AAAAAATCAAAATGACTAGGATTAAATC-ATGAGTC
1 AGAAAATGAAAACGACTAGGATTAAA-CAACAAGTC
* * * * * *
3250307 AAAAAATAAAAATGACAAGGATTAAACAACACATTG
1 AGAAAATGAAAACGACTAGGATTAAACAACA-AGTC
* **
3250343 A-AAAATGAAAATGAC-AGGGATTAAAACATGAA-TC
1 AGAAAATGAAAACGACTA-GGATT-AAACAACAAGTC
* * * *
3250377 AAAAAATGTAAAA--AATAGGGATTAAACCATAAGTC
1 AGAAAATG-AAAACGACTA-GGATTAAACAACAAGTC
* ** * * *
3250412 A-AAAACTAAAAATAACTAGGATTAAACCACGAGTT
1 AGAAAA-TGAAAACGACTAGGATTAAACAACAAGTC
* *
3250447 AGAAAATAAAAATGACCT-GGATTAAA
1 AGAAAATGAAAACGA-CTAGGATTAAA
3250473 TCATGGGCAA
Statistics
Matches: 242, Mismatches: 45, Indels: 40
0.74 0.14 0.12
Matches are distributed among these distances:
34 21 0.09
35 170 0.70
36 50 0.21
37 1 0.00
ACGTcount: A:0.54, C:0.12, G:0.17, T:0.18
Consensus pattern (35 bp):
AGAAAATGAAAACGACTAGGATTAAACAACAAGTC
Found at i:3250488 original size:35 final size:34
Alignment explanation
Indices: 3250449--3250541 Score: 105
Period size: 34 Copynumber: 2.7 Consensus size: 34
3250439 CACGAGTTAG
* *
3250449 AAAATAAAAATGACCTGGATTAAATCATGGGCAAA
1 AAAAT-AAAATGACCTAGATTAAATCATGAGCAAA
* * *
3250484 AAAATGAAATGACCTAGATTAAATTATGAGCCAA
1 AAAATAAAATGACCTAGATTAAATCATGAGCAAA
* *
3250518 AAAATGAAAACGACCAAGATTAAA
1 AAAAT-AAAATGACCTAGATTAAA
3250542 CCAGGGGTCA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
34 29 0.59
35 20 0.41
ACGTcount: A:0.54, C:0.12, G:0.15, T:0.19
Consensus pattern (34 bp):
AAAATAAAATGACCTAGATTAAATCATGAGCAAA
Found at i:3250489 original size:105 final size:104
Alignment explanation
Indices: 3250290--3250486 Score: 238
Period size: 105 Copynumber: 1.9 Consensus size: 104
3250280 AAAATGACTA
* * * *
3250290 GGATTAAATCATGAGTCAAAAAATAAAAATGACAAGGATTAAACAACACATTGAAAAATGAAAAT
1 GGATTAAACCATAAGTCAAAAAATAAAAATAACAAGGATTAAAC-ACACATTGAAAAATAAAAAT
*
3250355 GACAGGGATTAAAACATGAATCAAAAAATGTAAAAAATAG
65 GACAGGGATTAAAACATGAAGCAAAAAATGTAAAAAATAG
* *
3250395 GGATTAAACCATAAGTCAAAAACTAAAAATAACTAGGATTAAAC-CACGAGTT-AGAAAATAAAA
1 GGATTAAACCATAAGTCAAAAAATAAAAATAACAAGGATTAAACACAC-A-TTGA-AAAATAAAA
** * *
3250458 ATGACCTGGATTAAATCATG-GGCAAAAAA
63 ATGACAGGGATTAAAACATGAAGCAAAAAA
3250487 ATGAAATGAC
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
103 3 0.04
104 9 0.12
105 66 0.85
ACGTcount: A:0.55, C:0.11, G:0.15, T:0.19
Consensus pattern (104 bp):
GGATTAAACCATAAGTCAAAAAATAAAAATAACAAGGATTAAACACACATTGAAAAATAAAAATG
ACAGGGATTAAAACATGAAGCAAAAAATGTAAAAAATAG
Found at i:3250504 original size:34 final size:34
Alignment explanation
Indices: 3250449--3250632 Score: 129
Period size: 35 Copynumber: 5.3 Consensus size: 34
3250439 CACGAGTTAG
*
3250449 AAAATAAAAATGACCTG-GATTAAATCATGGGCAAA
1 AAAATGAAAATGACC-GAGATTAAATCATGGGC-AA
* * *
3250484 AAAATG-AAATGACCTAGATTAAATTATGAGCCAA
1 AAAATGAAAATGACCGAGATTAAATCATG-GGCAA
* * * * *
3250518 AAAATGAAAACGACCAAGATTAAACCAGGGGTCAG
1 AAAATGAAAATGACCGAGATTAAATCATGGG-CAA
* * * * *
3250553 AAAATGAAAATGATCGAAATTAAACCATGGGTTAG
1 AAAATGAAAATGACCGAGATTAAATCATGGG-CAA
* * ** *
3250588 AAAATGAAATTGACAGAGATTAAATCACAAGTCAA
1 AAAATGAAAATGACCGAGATTAAATCA-TGGGCAA
3250623 AAAATGAAAA
1 AAAATGAAAA
3250633 CGATAGGTAT
Statistics
Matches: 116, Mismatches: 28, Indels: 10
0.75 0.18 0.06
Matches are distributed among these distances:
34 28 0.24
35 87 0.75
36 1 0.01
ACGTcount: A:0.52, C:0.11, G:0.17, T:0.19
Consensus pattern (34 bp):
AAAATGAAAATGACCGAGATTAAATCATGGGCAA
Found at i:3250555 original size:104 final size:105
Alignment explanation
Indices: 3250431--3250681 Score: 256
Period size: 104 Copynumber: 2.4 Consensus size: 105
3250421 AAATAACTAG
* * *
3250431 GATTAAACCACGAGTTAGAAAATAAAAATGACCTG-GATTAAATCATGGGCAAAAAAATGAAA-T
1 GATTAAACCACGAGTCAGAAAATAAAAATGACC-GAAATTAAACCATGGGCAAAAAAATGAAATT
** * **
3250494 GACCTAGATTAAATTATGAGCCAAAAAATGAAAACGACCAA
65 GACAGAGATTAAATCACAAGCCAAAAAATGAAAACGACCAA
* * * * ** *
3250535 GATTAAACCAGGGGTCAGAAAATGAAAATGATCGAAATTAAACCATGGGTTAGAAAATGAAATTG
1 GATTAAACCACGAGTCAGAAAATAAAAATGACCGAAATTAAACCATGGGCAAAAAAATGAAATTG
* * *
3250600 ACAGAGATTAAATCACAAGTCAAAAAATGAAAACGA-TAG
66 ACAGAGATTAAATCACAAGCCAAAAAATGAAAACGACCAA
* * * *
3250639 GTATTAAATCACAAGCCAGAGAAATAAAAATGATCGAAATTAA
1 G-ATTAAACCACGAGTCAGA-AAATAAAAATGACCGAAATTAA
3250682 GTCACAAGTC
Statistics
Matches: 119, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
103 1 0.01
104 52 0.44
105 45 0.38
106 21 0.18
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.20
Consensus pattern (105 bp):
GATTAAACCACGAGTCAGAAAATAAAAATGACCGAAATTAAACCATGGGCAAAAAAATGAAATTG
ACAGAGATTAAATCACAAGCCAAAAAATGAAAACGACCAA
Found at i:3250739 original size:35 final size:35
Alignment explanation
Indices: 3250518--3250739 Score: 160
Period size: 35 Copynumber: 6.3 Consensus size: 35
3250508 TATGAGCCAA
* * ***
3250518 AAAATGAAAACGACCAAGATTAAACCAGGGGTCAG
1 AAAATGAAAACGATCGAGATTAAACCACAAGTCAG
* * *** *
3250553 AAAATGAAAATGATCGAAATTAAACCATGGGTTAG
1 AAAATGAAAACGATCGAGATTAAACCACAAGTCAG
** * *
3250588 AAAATGAAATTGA-CAGAGATTAAATCACAAGTCAA
1 AAAATGAAAACGATC-GAGATTAAACCACAAGTCAG
* * *
3250623 AAAATGAAAACGATAG-GTATTAAATCACAAGCCAG
1 AAAATGAAAACGATCGAG-ATTAAACCACAAGTCAG
* * * ** *
3250658 AGAAATAAAAATGATCGAAATTAAGTCACAAGTCAA
1 A-AAATGAAAACGATCGAGATTAAACCACAAGTCAG
** *
3250694 AAAATGAAAACGATCGAGATTAAACCATGAGTTAG
1 AAAATGAAAACGATCGAGATTAAACCACAAGTCAG
3250729 AAAATGAAAAC
1 AAAATGAAAAC
3250740 AATAATGAAA
Statistics
Matches: 147, Mismatches: 35, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
34 2 0.01
35 118 0.80
36 27 0.18
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.18
Consensus pattern (35 bp):
AAAATGAAAACGATCGAGATTAAACCACAAGTCAG
Found at i:3251377 original size:105 final size:105
Alignment explanation
Indices: 3251193--3251723 Score: 387
Period size: 105 Copynumber: 5.0 Consensus size: 105
3251183 CATAAGTCAT
* * * * * * ** * *
3251193 AAATAAAAATGACCAAAATCAAATCATGAGTTAGAAAATGAAACTGACCGGGATTAAACCACTAC
1 AAATAAAAATGAACGAAATTAAATCATGAGTCAAAAAATGAAAATGATTGGGATTAAACCACGAG
* **
3251258 TCAAGAAACGAAAATGACTAGAATTAAATCACGAGTTAGA
66 TCAAAAAATAAAAATGACTAGAATTAAATCACGAGTTAGA
* * *
3251298 AAATAAAAATGAACGAAATTAAATCATGAGTC-TAAAATAGAAAATGATTGGGATGAAACTACGA
1 AAATAAAAATGAACGAAATTAAATCATGAGTCAAAAAAT-GAAAATGATTGGGATTAAACCACGA
* *
3251362 GTCAAAAAATAAAAATGAC-AGTGATTAAA-CTATGAGTTAGA
65 GTCAAAAAATAAAAATGACTAG-AATTAAATC-ACGAGTTAGA
* * * * * * *
3251403 GAAT-AAAATGATCGAGATGAAACCACT-AGTCAAAAAATGAAAAATGGTTGGGATTAAACCATG
1 AAATAAAAATGAACGAAATTAAATCA-TGAGTCAAAAAATG-AAAATGATTGGGATTAAACCACG
* * * * * *
3251466 AGTTAGAGAAATAAAAATGACCAAAATTAAATCACGAGTCAAA
64 AGTCA-AAAAATAAAAATGACTAGAATTAAATCACGAGTTAGA
* * * * *
3251509 AAATAAAAATGACCTAGATTAAATCATAAGTCAAAAAATGAAAATGATTGGGATTAAACCA-TAG
1 AAATAAAAATGAACGAAATTAAATCATGAGTCAAAAAATGAAAATGATTGGGATTAAACCACGA-
* * * * * * *
3251573 GTCAGAAAATGAAAACGA-TTGAGATTAAACCATGGGTTAGA
65 GTCAAAAAATAAAAATGACTAGA-ATTAAATCACGAGTTAGA
* * * * ** ** * *
3251614 AAATGAAAATG-ACCAAGATTAAATCATGAGTTAGAAAATGAAAACAATTGACATTAAATCACAA
1 AAATAAAAATGAACGAA-ATTAAATCATGAGTCAAAAAATGAAAATGATTGGGATTAAACCACGA
* * * *
3251678 GCCAGAAAAGTAAAAATGA-TTGAAATTAAATCATGAGTTAGA
65 GTCA-AAAAATAAAAATGACTAG-AATTAAATCACGAGTTAGA
3251720 AAAT
1 AAAT
3251724 GGAAACGATA
Statistics
Matches: 335, Mismatches: 74, Indels: 33
0.76 0.17 0.07
Matches are distributed among these distances:
104 33 0.10
105 182 0.54
106 88 0.26
107 32 0.10
ACGTcount: A:0.51, C:0.11, G:0.17, T:0.21
Consensus pattern (105 bp):
AAATAAAAATGAACGAAATTAAATCATGAGTCAAAAAATGAAAATGATTGGGATTAAACCACGAG
TCAAAAAATAAAAATGACTAGAATTAAATCACGAGTTAGA
Found at i:3251506 original size:72 final size:69
Alignment explanation
Indices: 3251350--3251521 Score: 209
Period size: 72 Copynumber: 2.4 Consensus size: 69
3251340 AATGATTGGG
* * * *
3251350 ATGAAACTACGAGTCAAAAAATAAAAATGACAGTGATTAAACTATGAGTTAGAGAATAAAATGAT
1 ATGAAACCACGAGTCAAAAAATAAAAATGACAGGGATTAAACCATGAGTTAGAGAATAAAATGAC
* *
3251415 CGAG
66 CAAA
* ***
3251419 ATGAAACCACTAGTCAAAAAATGAAAAATGGTTGGGATTAAACCATGAGTTAGAGAAATAAAAAT
1 ATGAAACCACGAGTCAAAAAAT-AAAAATGACAGGGATTAAACCATGAGTTAGAG-AAT-AAAAT
3251484 GACCAAA
63 GACCAAA
* *
3251491 ATTAAATCACGAGTCAAAAAATAAAAATGAC
1 ATGAAACCACGAGTCAAAAAATAAAAATGAC
3251522 CTAGATTAAA
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
69 20 0.24
70 27 0.32
71 10 0.12
72 28 0.33
ACGTcount: A:0.52, C:0.10, G:0.17, T:0.20
Consensus pattern (69 bp):
ATGAAACCACGAGTCAAAAAATAAAAATGACAGGGATTAAACCATGAGTTAGAGAATAAAATGAC
CAAA
Found at i:3251670 original size:35 final size:35
Alignment explanation
Indices: 3250943--3253614 Score: 283
Period size: 35 Copynumber: 75.8 Consensus size: 35
3250933 TTAAATAAGA
* * * * *
3250943 AGTCAAAAAATGAAAAATGATTGGGATTATA-CTACG
1 AGTCAGAAAATG-AAAACGATTGAGATTAAATC-ATG
* * * * *
3250979 AGTCAAAAAATGAAAATGATCGGGATTAAAGCATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * * *
3251014 AGTCAAAAAATAAAAATGATAGGGATTAAA-CATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * ** *
3251048 AGTCAGAAAATGTAAAACAATGGGGATTAAGCCATA
1 AGTCAGAAAATG-AAAACGATTGAGATTAAATCATG
* ** * * **
3251084 AGTCA-AAAACTG-AAATGA-CCAAATTAAACCACA
1 AGTCAGAAAA-TGAAAACGATTGAGATTAAATCATG
* * *
3251117 AGTCCA-AAAATGAAAATG-TTTAGAATTAAATGATG
1 AGT-CAGAAAATGAAAACGATTGAG-ATTAAATCATG
* * * * ** *
3251152 ACTCAAAAAATGAAAATGATCGTTATTAAATCATA
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * *** * *
3251187 AGTCA-TAAATAAAAATGACCAAAATCAAATCATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* ** * *
3251221 AGTTAGAAAATG-AAACTGACCGGGATTAAACCACT-
1 AGTCAGAAAATGAAAAC-GATTGAGATTAAATCA-TG
* * * * *
3251256 ACTCA-AGAAACGAAAATGACT-AGAATTAAATCACG
1 AGTCAGA-AAATGAAAACGATTGAG-ATTAAATCATG
* * * ** *
3251291 AGTTAGAAAATAAAAATGAACGAAATTAAATCATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * * *
3251326 AGTC-TAAAATAGAAAATGATTGGGATGAAA-CTACG
1 AGTCAGAAAAT-GAAAACGATTGAGATTAAATC-ATG
* * * ** *
3251361 AGTCAAAAAATAAAAATGACAGTGATTAAA-CTATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATC-ATG
* * * * * *
3251396 AGTTAGAGAAT-AAAATGATCGAGATGAAACCACT-
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCA-TG
* * * * *
3251430 AGTCAAAAAATGAAAAATGGTTGGGATTAAACCATG
1 AGTCAGAAAATG-AAAACGATTGAGATTAAATCATG
* * * *** * *
3251466 AGTTAGAGAAATAAAAATGACCAAAATTAAATCACG
1 AGTCAGA-AAATGAAAACGATTGAGATTAAATCATG
* * * * *
3251502 AGTCAAAAAATAAAAATGACCT-AGATTAAATCATA
1 AGTCAGAAAATGAAAACGA-TTGAGATTAAATCATG
* * * *
3251537 AGTCAAAAAATGAAAATGATTGGGATTAAACCAT-
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
*
3251571 AGGTCAGAAAATGAAAACGATTGAGATTAAACCATG
1 A-GTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * ***
3251607 GGTTAGAAAATGAAAATGACCAAGATTAAATCATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * **
3251642 AGTTAGAAAATGAAAACAATTGACATTAAATCACA
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * *
3251677 AGCCAGAAAAGTAAAAATGATTGAAATTAAATCATG
1 AGTCAGAAAA-TGAAAACGATTGAGATTAAATCATG
* * * *
3251713 AGTTAGAAAATGGAAACGATAATGAAAATTACTGAAATTATATTATG
1 AGTCAGAAAATGAAAACGAT--TG------A--G--ATTAAATCATG
*
3251760 AGTCAGAAAATGAAAATGATT-AGGATTAAGA-CATG
1 AGTCAGAAAATGAAAACGATTGA-GATTAA-ATCATG
* * * * * * *
3251795 AGTTAAAAAATGAAAACAAATGAAATTAAAGCACG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * * * * * *
3251830 AGTCAAAAAATAAAAATGACTCGA-ACTAAACCCTT
1 AGTCAGAAAATGAAAACGA-TTGAGATTAAATCATG
* * *
3251865 AG-CGAGAAAATTAAAAAC-ATT-AGGATTAAACCATA
1 AGTC-AGAAAA-TGAAAACGATTGA-GATTAAATCATG
* * ** * *
3251900 AGTCAAAAAATGGAAGTGATCGACATTAAA-CAATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATC-ATG
* * * * *
3251935 AGTCAGAAAATGAAAAATGACTAAGATTATA-CTACG
1 AGTCAGAAAATG-AAAACGATTGAGATTAAATC-ATG
* * * ** ** *
3251971 AATTAAAAAATGAAATTGA-CCAGGATTAAGTCATG
1 AGTCAGAAAATGAAAACGATTGA-GATTAAATCATG
* * * **
3252006 AGTC---AAA--AAATCG---GGGATTAAAACACA
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* ** * *
3252033 AGTCA-AAAA-GCAAAAATGATCAAGATTAAACCA-C
1 AGTCAGAAAATG--AAAACGATTGAGATTAAATCATG
** * *
3252067 ATGTCA-AAAAACAGAAAGGA-TAAGGATTAAATCATG
1 A-GTCAGAAAATGA-AAACGATTGA-GATTAAATCATG
* * ** * **
3252103 AGTCAAAAAATAAAAACGA-CCAGGATTAAACCACA
1 AGTCAGAAAATGAAAACGATTGA-GATTAAATCATG
* * * *
3252138 AGTCAGAAAATAAAAATGACTT-TGATTAAATCA-C
1 AGTCAGAAAATGAAAACGA-TTGAGATTAAATCATG
* * ***
3252172 AGGCCAGAAAATG-AAATGACCCAGATTAAATCATG
1 A-GTCAGAAAATGAAAACGATTGAGATTAAATCATG
* *** * *
3252207 -GGCTAGAAAATGAAAACGACCAAGATGAAACCATG
1 AGTC-AGAAAATGAAAACGATTGAGATTAAATCATG
* * * * *
3252242 GGTCAGAAAATGAAAATGATAGGGATTAAACCATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * * *
3252277 GGTTAGAAAATGAAAACGACTAAGATTAAATCACG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * *
3252312 AGTCAGAAAATTAAAATGATCG-GTATTAAATCA-C
1 AGTCAGAAAATGAAAACGATTGAG-ATTAAATCATG
* *
3252346 ACG-CTAGAGAAAT-AAAACTGATTGAAATTAAATCACG
1 A-GTC-AGA-AAATGAAAAC-GATTGAGATTAAATCATG
* * * *
3252383 AGTTAGAAAATGAAAATGATTGAAATTAAACCATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * *
3252418 AGTCAAAAAATGAAAACGATAATGAAAATTATCAAAATGAAATTATG
1 AGTCAGAAAATGAAAACGAT--TG---A-GAT-----T-AAATCATG
* * ** **** * *
3252465 AGCCAAAAAATGAAATTGGCCAAGATCAAAAT-GTG
1 AGTCAGAAAATGAAAACGATTGAGAT-TAAATCATG
* * * *
3252500 AGTTAAAAAATGACAACGATTCGA-ATTAAAGCATG
1 AGTCAGAAAATGAAAACGATT-GAGATTAAATCATG
* * * * *
3252535 AGTCAGAAAATGAAAACGACT-AGGAATAAACCCTA
1 AGTCAGAAAATGAAAACGATTGA-GATTAAATCATG
* *** * *
3252570 AG-CGAGAAAATGAAAACCACCAAGATTAAACCACG
1 AGTC-AGAAAATGAAAACGATTGAGATTAAATCATG
* ** ** ** * **
3252605 AGTCAAAAAATGAAAGTGATCAAGAGGAAATGACA
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* *** * * *
3252640 AGTCAAAAAATGAAAAACGACCAAGACTATACCATG
1 AGTCAGAAAATG-AAAACGATTGAGATTAAATCATG
* * ** *
3252676 AGTCAAAAAATGAAAATGA-CCAGGATAAAATCATG
1 AGTCAGAAAATGAAAACGATTGA-GATTAAATCATG
* * * * ** *
3252711 ACTCAAAAAATAAAAATGACCAGGGATTAAA-CAATG
1 AGTCAGAAAATGAAAACGA-TTGAGATTAAATC-ATG
** * *
3252747 CA-TC-GAAAAATGAAAACGACAGGGATTAAAGCATG
1 -AGTCAG-AAAATGAAAACGATTGAGATTAAATCATG
* * * * * *
3252782 AGTTAGAAAATGTAAAACAATAGGGATTAAACCATA
1 AGTCAGAAAATG-AAAACGATTGAGATTAAATCATG
* ** * *
3252818 AGTCA-AAAAGTGAAAATGATCAAGATTAAACCACG
1 AGTCAGAAAA-TGAAAACGATTGAGATTAAATCATG
*
3252853 AGTCAGAAAATGAAAATGATCAT-A-ATTAAA-CAATG
1 AGTCAGAAAATGAAAACGAT--TGAGATTAAATC-ATG
* * **
3252888 AGTCAAAAAATGAAAATGA-CCAGCATTAAATCATG
1 AGTCAGAAAATGAAAACGATTGAG-ATTAAATCATG
* * * *
3252923 AGTCAAAGAAATAAAAATGATT-AGAATCAAATCATG
1 AGTCAGA-AAATGAAAACGATTGAG-ATTAAATCATG
* * *
3252959 AATCAGAAAAT-AAAACTGA-TCAGGATTAAACCACT-
1 AGTCAGAAAATGAAAAC-GATTGA-GATTAAATCA-TG
* * *
3252994 AGTCA-AGAAACGAAAATGA-TCAGAATTAAATCATG
1 AGTCAGA-AAATGAAAACGATTGAG-ATTAAATCATG
* * ** ** *
3253029 AGTTA-AAAA-AAAAATAACCGAAATTAAATCATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * * *
3253062 AGTCTA-AAACTAAAAATGACT-ACGATTAAATCACG
1 AGTC-AGAAAATGAAAACGATTGA-GATTAAATCATG
* * * ** * *
3253097 AGTCAGGAAATTAAAACAACAGGGATTAAACCATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * * * * *
3253132 AGTCAGAGAGTGAAAATGACTAAGATGAAACCACT-
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCA-TG
* **
3253167 AGTCAGAAAATGAAAAATGATCAAGATTAAA-CTATG
1 AGTCAGAAAATG-AAAACGATTGAGATTAAATC-ATG
* * * * * * *
3253203 AGTCAAAAAATGAAGACAATGGGGATTAAACCACG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * *** * *
3253238 AGTCAGAGGAATAAAAATGACCAAAATTAAATCACG
1 AGTCAGA-AAATGAAAACGATTGAGATTAAATCATG
* * * **
3253274 AGTTAGAAAATGAAAATGA-TGAGAATTAAACCACA
1 AGTCAGAAAATGAAAACGATTGAG-ATTAAATCATG
* * *
3253309 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * * *
3253344 AGTCAAAAAATAAAAACGATCGATATTAAATCATA
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * * *
3253379 AGTTAAAAAATAAAAATGACTCGA-ATTAAATCATG
1 AGTCAGAAAATGAAAACGA-TTGAGATTAAATCATG
* * * * * *
3253414 AGCCAAAAAATGAAAATGATCGGGATTAAACCATG
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * * * *
3253449 GGTTAGAAAATAAAAACAACTGAGATTAAACCAT-
1 AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
* * * **
3253483 AGGTTAGAAAA--AAATA--ACTAAGATTAAATCACA
1 A-GTCAGAAAATGAAA-ACGATTGAGATTAAATCATG
* * * **
3253516 AGTTAAAAAATGAAAATGATTG-GTATTAAATCACA
1 AGTCAGAAAATGAAAACGATTGAG-ATTAAATCATG
* * * * * **
3253551 AGCCAGAGAAATAAAAATGATCGAAATTGCATCATG
1 AGTCAGA-AAATGAAAACGATTGAGATTAAATCATG
*
3253587 AGTTCA-AAAATGAAAATGATTGAGATTA
1 AG-TCAGAAAATGAAAACGATTGAGATTA
3253615 TTAAACCACC
Statistics
Matches: 1960, Mismatches: 509, Indels: 335
0.70 0.18 0.12
Matches are distributed among these distances:
27 12 0.01
29 3 0.00
30 5 0.00
32 28 0.01
33 44 0.02
34 168 0.09
35 1253 0.64
36 377 0.19
37 13 0.01
38 1 0.00
40 1 0.00
41 4 0.00
42 1 0.00
43 1 0.00
45 1 0.00
46 1 0.00
47 47 0.02
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (35 bp):
AGTCAGAAAATGAAAACGATTGAGATTAAATCATG
Found at i:3251694 original size:211 final size:210
Alignment explanation
Indices: 3251268--3251715 Score: 458
Period size: 211 Copynumber: 2.1 Consensus size: 210
3251258 TCAAGAAACG
* * * * *
3251268 AAAATGACTAGAATTAAATCACGAGTTAGAAAATAAAAATGAACGAAATTAAATCATGAGTCTAA
1 AAAATGACTAAAATTAAATCACGAGTCAAAAAATAAAAATGAACGAAATTAAATCATAAGTCAAA
* * *
3251333 AATAGAAAATGATTGGGATGAAACTACGAGTCAAAAAATAAAAATGACAGTGATTAAACTATGAG
66 AATAGAAAATGATTGGGATGAAACTACGAGTCAAAAAATAAAAACGACAGAGATTAAACCATGAG
* * * * **
3251398 TTAGAGAATAAAATGATCGAGATGAAACCACTAGTCAAAAAATGAAAAATGGTTGGGATTAAACC
131 TTAGAAAATAAAATGACCAAGATGAAACCACTAGTCAAAAAATGAAAAA-GATTGACATTAAACC
** **
3251463 ATGAGTTAGAGAAATA
195 ACAAGCCAGAGAAATA
* * * *
3251479 AAAATGACCAAAATTAAATCACGAGTCAAAAAATAAAAATGACCTAGATTAAATCATAAGTCAAA
1 AAAATGACTAAAATTAAATCACGAGTCAAAAAATAAAAATGAACGAAATTAAATCATAAGTCAAA
* * * **
3251544 AA-ATGAAAATGATTGGGATTAAACCATA-G-GTCAGAAAATGAAAACGATTGAGATTAAACCAT
66 AATA-GAAAATGATTGGGATGAAA-C-TACGAGTCAAAAAATAAAAACGACAGAGATTAAACCAT
* * * * *
3251606 GGGTTAGAAAATGAAAATGACCAAGATTAAATCA-TGAGTTAGAAAATGAAAACA-ATTGACATT
128 GAGTTAGAAAAT-AAAATGACCAAGATGAAACCACT-AGTCAAAAAATGAAAA-AGATTGACATT
*
3251669 AAATCACAAGCCAGA-AAAGTA
190 AAACCACAAGCCAGAGAAA-TA
* * *
3251690 AAAATGATTGAAATTAAATCATGAGT
1 AAAATGACTAAAATTAAATCACGAGT
3251716 TAGAAAATGG
Statistics
Matches: 193, Mismatches: 37, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
210 4 0.02
211 153 0.79
212 33 0.17
213 3 0.02
ACGTcount: A:0.51, C:0.10, G:0.17, T:0.22
Consensus pattern (210 bp):
AAAATGACTAAAATTAAATCACGAGTCAAAAAATAAAAATGAACGAAATTAAATCATAAGTCAAA
AATAGAAAATGATTGGGATGAAACTACGAGTCAAAAAATAAAAACGACAGAGATTAAACCATGAG
TTAGAAAATAAAATGACCAAGATGAAACCACTAGTCAAAAAATGAAAAAGATTGACATTAAACCA
CAAGCCAGAGAAATA
Found at i:3252763 original size:106 final size:104
Alignment explanation
Indices: 3252534--3253464 Score: 380
Period size: 106 Copynumber: 8.8 Consensus size: 104
3252524 ATTAAAGCAT
* * * * ** *
3252534 GAGTCAGAAAATGAAAACGACTAG-GAATAAACCCTAAG-CGAGAAAATGAAAACCACCAAGATT
1 GAGTCA-AAAATGAAAACGAC-AGAGATTAAACCATGAGTC-AAAAAATGAAAATGACCAGGATT
* * * * * ** **
3252597 AAACCACGAGTCAAAAAATGAAAGTGATCAAGAGGAAATGAC
63 AAATCATGAGTCAAAAAATAAAAATGACCAAGATTAAACAAC
* * * *
3252639 AAGTCAAAAAATGAAAAACGACCA-AGACTATACCATGAGTCAAAAAATGAAAATGACCAGGATA
1 GAGTC-AAAAATG-AAAACGA-CAGAGATTAAACCATGAGTCAAAAAATGAAAATGACCAGGATT
* * *
3252703 AAATCATGACTCAAAAAATAAAAATGACCAGGGATTAAACAAT
63 AAATCATGAGTCAAAAAATAAAAATGACCA-AGATTAAACAAC
* * * * * **
3252746 GCA-TCGAAAAATGAAAACGACAGGGATTAAAGCATGAGTTAGAAAATGTAAAA-CAATAGGGAT
1 G-AGTC-AAAAATGAAAACGACAGAGATTAAACCATGAGTCAAAAAATG-AAAATGACCA-GGAT
* * * * * *
3252809 TAAACCATAAGTCAAAAAGTGAAAATGATCAAGATTAAACCAC
62 TAAATCATGAGTCAAAAAATAAAAATGACCAAGATTAAACAAC
* * * *
3252852 GAGTCAGAAAATGAAAATGATCATA-ATTAAACAATGAGTCAAAAAATGAAAATGACCAGCATTA
1 GAGTCA-AAAATGAAAACGA-CAGAGATTAAACCATGAGTCAAAAAATGAAAATGACCAGGATTA
** * *
3252916 AATCATGAGTCAAAGAAATAAAAATGA-TTAGAATCAAATC-AT
64 AATCATGAGTCAAA-AAATAAAAATGACCAAG-ATTAAA-CAAC
* * * * *
3252958 GAATCAGAAAAT-AAAACTGATCAG-GATTAAACCACT-AGTCAAGAAACGAAAATGATCAGAAT
1 GAGTCA-AAAATGAAAAC-GA-CAGAGATTAAACCA-TGAGTCAAAAAATGAAAATGACCAGGAT
* * *
3253020 TAAATCATGAGT-TAAAAA-AAAAATAACCGAA-ATTAAATC-AT
62 TAAATCATGAGTCAAAAAATAAAAATGACC-AAGATTAAA-CAAC
* * * * * * ** * * *
3253061 GAGTCTAAAACTAAAAATGACTA-CGATTAAATCACGAGTCAGGAAATTAAAA-CAACAGGGATT
1 GAGTC-AAAAATGAAAACGAC-AGAGATTAAACCATGAGTCAAAAAATGAAAATGACCA-GGATT
* * * * * * * *
3253124 AAACCATGAGTCAGAGAGTGAAAATGACTAAGATGAAACCAC
63 AAATCATGAGTCAAAAAATAAAAATGACCAAGATTAAACAAC
* * * * ** ***
3253166 TAGTCAGAAAATGAAAAATGATCA-AGATTAAACTATGAGTCAAAAAATGAAGACAATGGGGATT
1 GAGTCA-AAAATG-AAAACGA-CAGAGATTAAACCATGAGTCAAAAAATGAAAATGACCAGGATT
* * ** *
3253230 AAACCACGAGTCAGAGGAATAAAAATGACCAAAATTAAATC-AC
63 AAATCATGAGTCA-AAAAATAAAAATGACCAAGATTAAA-CAAC
* * * ** * *
3253273 GAGTTAGAAAATGAAAATGA-TGAGAATTAAACCACAAGTCAGAAAATGAAAATGATC-GAGATT
1 GAGTCA-AAAATGAAAACGACAGAG-ATTAAACCATGAGTCAAAAAATGAAAATGACCAG-GATT
* * * * *
3253336 AAATCACGAGTCAAAAAATAAAAACGATCGATATTAAATCATA-
63 AAATCATGAGTCAAAAAATAAAAATGACCAAGATTAAA-CA-AC
* * * * * * * *
3253379 -AGTTAAAAAATAAAAATGACTCGA-ATTAAATCATGAGCCAAAAAATGAAAATGATCGGGATTA
1 GAG-TCAAAAATGAAAACGAC-AGAGATTAAACCATGAGTCAAAAAATGAAAATGACCAGGATTA
* * * *
3253442 AACCATGGGTTAGAAAATAAAAA
64 AATCATGAGTCAAAAAATAAAAA
3253465 CAACTGAGAT
Statistics
Matches: 629, Mismatches: 150, Indels: 94
0.72 0.17 0.11
Matches are distributed among these distances:
102 4 0.01
103 63 0.10
104 14 0.02
105 153 0.24
106 304 0.48
107 89 0.14
108 2 0.00
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.18
Consensus pattern (104 bp):
GAGTCAAAAATGAAAACGACAGAGATTAAACCATGAGTCAAAAAATGAAAATGACCAGGATTAAA
TCATGAGTCAAAAAATAAAAATGACCAAGATTAAACAAC
Found at i:3253507 original size:32 final size:34
Alignment explanation
Indices: 3253437--3253510 Score: 98
Period size: 32 Copynumber: 2.2 Consensus size: 34
3253427 AAATGATCGG
* *
3253437 GATTAAACCATGGGTTAGAAAATAAAAACAACTGA
1 GATTAAACCATAGGTTAG-AAATAAAAACAACTAA
*
3253472 GATTAAACCATAGGTTAG-AA-AAAAATAACTAA
1 GATTAAACCATAGGTTAGAAATAAAAACAACTAA
3253504 GATTAAA
1 GATTAAA
3253511 TCACAAGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 17 0.47
33 2 0.06
35 17 0.47
ACGTcount: A:0.54, C:0.09, G:0.15, T:0.22
Consensus pattern (34 bp):
GATTAAACCATAGGTTAGAAATAAAAACAACTAA
Found at i:3253998 original size:35 final size:35
Alignment explanation
Indices: 3253835--3254092 Score: 150
Period size: 35 Copynumber: 7.3 Consensus size: 35
3253825 AAAAGCGATT
* * * *
3253835 GGATTAAACGATGAGTCAAAAATTGAAAAATGACTA-
1 GGATTAAACCACGAGTCAAAAAATG-AAAACGAC-AG
** * * *
3253871 GGATTGTACCACGAGTCAAAAAAAGAAAATGACTG
1 GGATTAAACCACGAGTCAAAAAATGAAAACGACAG
* * * * * *
3253906 GGAATAAATCATGAGTCAAAAAATAAAAATGATAG
1 GGATTAAACCACGAGTCAAAAAATGAAAACGACAG
**
3253941 GGATTAAACAACAC-A-TTGAAAAATGAAAACGACAG
1 GGATTAAAC--CACGAGTCAAAAAATGAAAACGACAG
* * * * *
3253976 AGATTAAAGCACGAGTCAAAAAATATAAAACAATAG
1 GGATTAAACCACGAGTCAAAAAAT-GAAAACGACAG
** * *
3254012 GGATTAAACCATAAGTCAAAAAGTGAAAATGACCA-
1 GGATTAAACCACGAGTCAAAAAATGAAAACGA-CAG
* * *
3254047 AGATTAAACCAC-AGTCAAAAAATAAAAACAACCA-
1 GGATTAAACCACGAGTCAAAAAATGAAAACGA-CAG
3254081 GGATTAAACCAC
1 GGATTAAACCAC
3254093 AAGTTAGAAA
Statistics
Matches: 168, Mismatches: 47, Indels: 16
0.73 0.20 0.07
Matches are distributed among these distances:
33 3 0.02
34 30 0.18
35 85 0.51
36 48 0.29
37 2 0.01
ACGTcount: A:0.53, C:0.13, G:0.16, T:0.17
Consensus pattern (35 bp):
GGATTAAACCACGAGTCAAAAAATGAAAACGACAG
Found at i:3254104 original size:71 final size:70
Alignment explanation
Indices: 3253918--3254104 Score: 213
Period size: 71 Copynumber: 2.7 Consensus size: 70
3253908 AATAAATCAT
** *
3253918 GAGTCAAAAAATAAAAATGATAGGGATTAAACAACACA-TTGAAAAATGAAAACGACAGAGATTA
1 GAGTCAAAAAATAAAAACAATAGGGATTAAACCACA-AGTTGAAAAATGAAAACGACAGAGATTA
*
3253982 AAGCAC
65 AACCAC
* * *
3253988 GAGTCAAAAAATATAAAACAATAGGGATTAAACCATAAG-TCAAAAAGTGAAAATGACCA-AGAT
1 GAGTCAAAAAATA-AAAACAATAGGGATTAAACCACAAGTTGAAAAA-TGAAAACGA-CAGAGAT
3254051 TAAACCAC
63 TAAACCAC
*
3254059 -AGTCAAAAAATAAAAACAACCA-GGATTAAACCACAAGTTAGAAAAA
1 GAGTCAAAAAATAAAAACAA-TAGGGATTAAACCACAAGTT-GAAAAA
3254105 AATGACTCGG
Statistics
Matches: 100, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
69 21 0.21
70 34 0.34
71 43 0.43
72 2 0.02
ACGTcount: A:0.57, C:0.13, G:0.14, T:0.16
Consensus pattern (70 bp):
GAGTCAAAAAATAAAAACAATAGGGATTAAACCACAAGTTGAAAAATGAAAACGACAGAGATTAA
ACCAC
Found at i:3254152 original size:34 final size:35
Alignment explanation
Indices: 3254114--3254253 Score: 131
Period size: 35 Copynumber: 3.9 Consensus size: 35
3254104 AAATGACTCG
**
3254114 GATTAAATCATGGGCCAGAAAAT-AAAATGACCTA
1 GATTAAATCATGGGTTAGAAAATGAAAATGACCTA
* * * *
3254148 GATTAAATCATAGGTTAAAAAATGAAAA-CATCTA
1 GATTAAATCATGGGTTAGAAAATGAAAATGACCTA
* *
3254182 GGATTAAACCATGGGTTAGAAAATGAAAATGACCGA
1 -GATTAAATCATGGGTTAGAAAATGAAAATGACCTA
*
3254218 GATTAATAAAATCATGGAGTCAGAAAATGAAAATGA
1 GA-T--T-AAATCATGG-GTTAGAAAATGAAAATGA
3254254 TCGATATTAT
Statistics
Matches: 84, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
34 23 0.27
35 31 0.37
36 4 0.05
38 1 0.01
39 8 0.10
40 17 0.20
ACGTcount: A:0.49, C:0.10, G:0.19, T:0.22
Consensus pattern (35 bp):
GATTAAATCATGGGTTAGAAAATGAAAATGACCTA
Found at i:3254222 original size:35 final size:35
Alignment explanation
Indices: 3254103--3254262 Score: 128
Period size: 34 Copynumber: 4.5 Consensus size: 35
3254093 AAGTTAGAAA
**
3254103 AAAATGACTCG-GATTAAATCATGGGCCAGAAAAT-
1 AAAATGAC-CGAGATTAAATCATGGGTTAGAAAATG
* * *
3254137 AAAATGACCTAGATTAAATCATAGGTTAAAAAATG
1 AAAATGACCGAGATTAAATCATGGGTTAGAAAATG
* * * *
3254172 AAAA-CATCTAGGATTAAACCATGGGTTAGAAAATG
1 AAAATGACCGA-GATTAAATCATGGGTTAGAAAATG
*
3254207 AAAATGACCGAGATTAATAAAATCATGGAGTCAGAAAATG
1 AAAATGACCGAGA-T--T-AAATCATGG-GTTAGAAAATG
* *
3254247 AAAATGATCGATATTA
1 AAAATGACCGAGATTA
3254263 TAAATCACCA
Statistics
Matches: 100, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
33 1 0.01
34 31 0.31
35 31 0.31
36 5 0.05
37 1 0.01
38 1 0.01
39 9 0.09
40 21 0.21
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (35 bp):
AAAATGACCGAGATTAAATCATGGGTTAGAAAATG
Found at i:3254522 original size:35 final size:35
Alignment explanation
Indices: 3254436--3254862 Score: 198
Period size: 35 Copynumber: 12.3 Consensus size: 35
3254426 TGCAAAGTTA
* * * * *
3254436 AAAAAATGAAAATGACCAAAAAATTAAATCACGTGTC
1 AAAAAATGAAAATGA-C-TAAGATTAAACCATGAGTC
* * * *
3254473 AGAAAATAAAAAATGGCTGAGATTAAACCATGAGTC
1 AAAAAAT-GAAAATGACTAAGATTAAACCATGAGTC
* * ** *
3254509 AAAAAATGAAAATG-TTCAGAATTAAATGATGACTC
1 AAAAAATGAAAATGACTAAG-ATTAAACCATGAGTC
* * *
3254544 AAAAAATGAAAATGA-TAGGCATTAAATCATAAGT-
1 AAAAAATGAAAATGACTAAG-ATTAAACCATGAGTC
* * * * *
3254578 AAAAAA--AAAATGACCAAAATCAAATCATGAGTT
1 AAAAAATGAAAATGACTAAGATTAAACCATGAGTC
* * *
3254611 AGAAAATGAAAATGACCAAGATTAAACCACT-ACTC
1 AAAAAATGAAAATGACTAAGATTAAACCA-TGAGTC
* * *
3254646 AAGAAATGAAAATGACT-AGAATTAAATCATGAGTT
1 AAAAAATGAAAATGACTAAG-ATTAAACCATGAGTC
* * * * * ** *
3254681 AGAAAATAAAAATGAATAAAATTAAATCACAAGTT
1 AAAAAATGAAAATGACTAAGATTAAACCATGAGTC
* * *
3254716 TAAAACTGAAAATGAC-AGGGATTAAACCATGAGTC
1 AAAAAATGAAAATGACTA-AGATTAAACCATGAGTC
* * * *
3254751 AAAAAATTAAAATGAC-AGGA-T-AACTATGAGTT
1 AAAAAATGAAAATGACTAAGATTAAACCATGAGTC
* * * *
3254783 AGAGAAT-AAAATGACTAAGATGAAACCACT-AGCC
1 AAAAAATGAAAATGACTAAGATTAAACCA-TGAGTC
* ** *
3254817 AAAAAATGAAAAACGA-TCGGGATTAAACCACGAGTC
1 AAAAAATG-AAAATGACT-AAGATTAAACCATGAGTC
3254853 AAAAAATGAA
1 AAAAAATGAA
3254863 GACAACAGGG
Statistics
Matches: 293, Mismatches: 77, Indels: 42
0.71 0.19 0.10
Matches are distributed among these distances:
31 8 0.03
32 36 0.12
33 7 0.02
34 27 0.09
35 155 0.53
36 47 0.16
37 7 0.02
38 6 0.02
ACGTcount: A:0.54, C:0.11, G:0.15, T:0.20
Consensus pattern (35 bp):
AAAAAATGAAAATGACTAAGATTAAACCATGAGTC
Found at i:3254739 original size:105 final size:105
Alignment explanation
Indices: 3254511--3254951 Score: 289
Period size: 102 Copynumber: 4.2 Consensus size: 105
3254501 CATGAGTCAA
** ** *
3254511 AAAATGAAAATGTTC-AGAATTAAATGATGACTCAAAAAATGAAAATGA-TAGGCATTAAATCAT
1 AAAATGAAAATGACCAAG-ATTAAACCATGACTCAAAAAATGAAAATGACTA-GAATTAAATCAT
* * **
3254574 AAG-TA-AAAA-AAAAATGACCAAAATCAAATCATGAGTTAG
64 GAGTTAGAAAATAAAAATGAACAAAATCAAATCACAAGTTAG
*
3254613 AAAATGAAAATGACCAAGATTAAACCACT-ACTCAAGAAATGAAAATGACTAGAATTAAATCATG
1 AAAATGAAAATGACCAAGATTAAACCA-TGACTCAAAAAATGAAAATGACTAGAATTAAATCATG
* *
3254677 AGTTAGAAAATAAAAATGAATAAAATTAAATCACAAGTTTA-
65 AGTTAGAAAATAAAAATGAACAAAATCAAATCACAAG-TTAG
* * * * * *
3254718 AAACTGAAAATGA-CAGGGATTAAACCATGAGTCAAAAAATTAAAATGAC-AGGA-TAACT-ATG
1 AAAATGAAAATGACCA-AGATTAAACCATGACTCAAAAAATGAAAATGACTAGAATTAAATCATG
* * * * * ** *
3254779 AGTTAGAGAAT-AAAATG-ACTAAGATGAAACCACTAGCCAA
65 AGTTAGAAAATAAAAATGAAC-AAAATCAAATCACAAGTTAG
* * ** * * * ** * * *
3254819 AAAATGAAAAACGATCGGGATTAAACCACGAGTCAAAAAATGAAGACAAC-AGGGATTAAACCAC
1 AAAATG-AAAATGACCAAGATTAAACCATGACTCAAAAAATGAAAATGACTA-GAATTAAATCAT
* * * **
3254883 GAGTTAGAGAAATAAAAATGACCAGAATTAAATCATTAGTTAG
64 GAGTTAGA-AAATAAAAATGAACAAAATCAAATCACAAGTTAG
** *
3254926 AAAACAAAAATGACCAGGATTAAACC
1 AAAATGAAAATGACCAAGATTAAACC
3254952 GCATGTTAGA
Statistics
Matches: 267, Mismatches: 53, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
100 2 0.01
101 23 0.09
102 99 0.37
103 15 0.06
104 13 0.05
105 69 0.26
106 23 0.09
107 22 0.08
108 1 0.00
ACGTcount: A:0.53, C:0.12, G:0.15, T:0.20
Consensus pattern (105 bp):
AAAATGAAAATGACCAAGATTAAACCATGACTCAAAAAATGAAAATGACTAGAATTAAATCATGA
GTTAGAAAATAAAAATGAACAAAATCAAATCACAAGTTAG
Found at i:3254874 original size:35 final size:35
Alignment explanation
Indices: 3254805--3254886 Score: 105
Period size: 36 Copynumber: 2.3 Consensus size: 35
3254795 GACTAAGATG
* *
3254805 AAACCACTAGCCAAAAAATGAAAAACGATCGGGATT
1 AAACCACGAGTCAAAAAATGAAAAACGA-CGGGATT
3254841 AAACCACGAGTCAAAAAATGAAGACAAC-A-GGGATT
1 AAACCACGAGTCAAAAAATGAA-A-AACGACGGGATT
3254876 AAACCACGAGT
1 AAACCACGAGT
3254887 TAGAGAAATA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
35 17 0.40
36 20 0.48
37 2 0.05
38 3 0.07
ACGTcount: A:0.50, C:0.20, G:0.18, T:0.12
Consensus pattern (35 bp):
AAACCACGAGTCAAAAAATGAAAAACGACGGGATT
Found at i:3254960 original size:35 final size:35
Alignment explanation
Indices: 3254871--3255021 Score: 137
Period size: 35 Copynumber: 4.3 Consensus size: 35
3254861 AAGACAACAG
3254871 GGATTAAACCACGA-GTTAGAGAAATAAAAATGACCA
1 GGATTAAACCAC-ATGTTAGA-AAATAAAAATGACCA
* * * *
3254907 GAATTAAATCA-TTAGTTAGAAAACAAAAATGACCA
1 GGATTAAACCACAT-GTTAGAAAATAAAAATGACCA
* *
3254942 GGATTAAACCGCATGTTAG-AAATAAAAATGACCT
1 GGATTAAACCACATGTTAGAAAATAAAAATGACCA
* * * * * * *
3254976 GGATTAAATCACAAGTCAAAAAATGAAAATGATCG
1 GGATTAAACCACATGTTAGAAAATAAAAATGACCA
3255011 GGATTAAACCA
1 GGATTAAACCA
3255022 TAGGTGAAAA
Statistics
Matches: 92, Mismatches: 19, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
34 27 0.29
35 49 0.53
36 16 0.17
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.21
Consensus pattern (35 bp):
GGATTAAACCACATGTTAGAAAATAAAAATGACCA
Found at i:3255192 original size:35 final size:35
Alignment explanation
Indices: 3255026--3255990 Score: 232
Period size: 35 Copynumber: 27.2 Consensus size: 35
3255016 AAACCATAGG
* * * *
3255026 TGAAAACGACTGAGATTAAACCATGGGTTAGAAAA
1 TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
* *** **
3255061 TGAAAATGACCAAGATTAAATCATGAGTTGGAAAA
1 TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
* ** *
3255096 TGAAAACGATCG-GCATTAAATCACAAGCCAGAAAA
1 TGAAAACGATTGAG-ATTAAATCATGAGTCAGAAAA
* * * *
3255131 GTAAAAATGGTTGAAATTAAATCATGAGTCAGAAAA
1 -TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
* * * *
3255167 TGAAAACAATTGAGATTAAACCATGACTCATAAAA
1 TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
* *
3255202 TGAAAACGATAATGAAAATTACTGAAATTATATTATGAGTCAGAAAA
1 TGAAAACGAT--TG------A--G--ATTAAATCATGAGTCAGAAAA
* * **
3255249 TGAAAATGA-TCAGGATTAAGA-CGCGAGTTCA-AAAA
1 TGAAAACGATTGA-GATTAA-ATCATGAG-TCAGAAAA
* * * * * *
3255284 TGAAAATGATCGAAAATAAAGCACGAGTCAGAAAA
1 TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
* * * * **
3255319 TGAAAGCGACTTG-GACTAAACCCT-AAACGAGAAAA
1 TGAAAACGA-TTGAGATTAAATCATGAGTC-AGAAAA
* * * * **
3255354 TGAAAACCACT-AGGACTAAACCACAAGTCAGAAAA
1 TGAAAACGATTGA-GATTAAATCATGAGTCAGAAAA
* * * * *
3255389 TGAAAGCGATCGACATTAAATTATGAGTCATAAAA
1 TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
* * * * * * * *
3255424 TGAAAAATGACTGGGATTATACCACGAATCAAAAAA
1 TG-AAAACGATTGAGATTAAATCATGAGTCAGAAAA
* * *
3255460 TGAAAATGATTGAGATTAAATAATGAGTCAAAAAA
1 TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
* * * * * *
3255495 T-AAAATGATAGGGATTAAACAACAT-ATTGA-AAAA
1 TGAAAACGATTGAGATT-AA-ATCATGAGTCAGAAAA
** * *
3255529 TGAAAACGACAGGGATTAAAGT-ATGAGTCAAAAAA
1 TGAAAACGATTGAGATTAAA-TCATGAGTCAGAAAA
* * * * ** *
3255564 TGTAAAACAATGGGGATTAAACCACAAGTCAAAAAAA
1 TG-AAAACGATTGAGATTAAATCATGAGTC-AGAAAA
* * * * *
3255601 GCGAAAATGATTAAGATTAAACCA-CATGTCA-AAAA
1 -TGAAAACGATTGAGATTAAATCATGA-GTCAGAAAA
* * * *
3255636 TGAAAATGACT-AGGATTAAATC-TCAAGTCAAAAAA
1 TGAAAACGATTGA-GATTAAATCAT-GAGTCAGAAAA
* ** * *
3255671 TAAAAACGA-CCAGCATTAAACCATAAGTCAGAAAA
1 TGAAAACGATTGAG-ATTAAATCATGAGTCAGAAAA
* * * ** *
3255706 TAAAAATGACTCTGATTAAATCAT-AGGCCAGAAAA
1 TGAAAACGATTGAGATTAAATCATGA-GTCAGAAAA
* *** * *
3255741 TG-AAATGACCCAGATTAAATCATGGGCCA-AAAA
1 TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
*** * *
3255774 CTGAAAACGACCAAGATTAAACCAT-AGGTTAGAAAA
1 -TGAAAACGATTGAGATTAAATCATGA-GTCAGAAAA
* * * * * *
3255810 TGAAAATGATAGGGATTAAACCATGGGTTAGAAAA
1 TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
* * *
3255845 TGAAAACGACTGAGATTAAATCACGAGTCAAAAAA
1 TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
** **
3255880 TGAAAAC-AACG-GTATTAAATCACAAG-CTAGAGAAA
1 TGAAAACGATTGAG-ATTAAATCATGAGTC-AGA-AAA
* * * * * *
3255915 TAAAAATGA-TGAAATTAAATAACGAGTTAGAAAA
1 TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
* * *
3255949 TGAAAACGATTGAGATTAAACCACGAATCAGAAAA
1 TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
*
3255984 TGTAAAC
1 TGAAAAC
3255991 AATAATGAAA
Statistics
Matches: 693, Mismatches: 177, Indels: 120
0.70 0.18 0.12
Matches are distributed among these distances:
33 10 0.01
34 105 0.15
35 429 0.62
36 92 0.13
37 28 0.04
38 2 0.00
43 1 0.00
44 1 0.00
45 1 0.00
47 24 0.03
ACGTcount: A:0.50, C:0.12, G:0.17, T:0.20
Consensus pattern (35 bp):
TGAAAACGATTGAGATTAAATCATGAGTCAGAAAA
Found at i:3255478 original size:71 final size:69
Alignment explanation
Indices: 3255370--3255679 Score: 234
Period size: 71 Copynumber: 4.4 Consensus size: 69
3255360 CCACTAGGAC
* * * * *
3255370 TAAACCACAAGTCAGAAAATGAAAGCGATCGACATTAAATTATGAGTCATAAAATGAAAAATGAC
1 TAAACCACAA-TCAAAAAATGAAAACGATTGAGATTAAATTATGAGTCAAAAAATG-AAAATGA-
3255435 T-GGGAT
63 TAGGGAT
* * *
3255441 TATACCACGAATCAAAAAATGAAAATGATTGAGATTAAATAATGAGTCAAAAAAT-AAAATGATA
1 TAAACCAC-AATCAAAAAATGAAAACGATTGAGATTAAATTATGAGTCAAAAAATGAAAATGATA
3255505 GGGAT
65 GGGAT
* ** ** * * **
3255510 TAAACAACATATTGAAAAATGAAAACGACAGGGATTAAAGTATGAGTCAAAAAATGTAAAACAAT
1 TAAACCACA-ATCAAAAAATGAAAACGATTGAGATTAAATTATGAGTCAAAAAATG-AAAATGAT
*
3255575 GGGGAT
64 AGGGAT
* * * ** *
3255581 TAAACCACAAGTCAAAAAAAGCGAAAATGATTAAGATTAAACCA-CATGTC-AAAAATGAAAATG
1 TAAACCACAA-TC-AAAAAA-TGAAAACGATTGAGATTAAATTATGA-GTCAAAAAATGAAAATG
3255644 ACTA-GGAT
62 A-TAGGGAT
* * *
3255652 TAAATCTCAAGTCAAAAAATAAAAACGA
1 TAAACCACAA-TCAAAAAATGAAAACGA
3255680 CCAGCATTAA
Statistics
Matches: 188, Mismatches: 41, Indels: 22
0.75 0.16 0.09
Matches are distributed among these distances:
68 2 0.01
69 61 0.32
70 7 0.04
71 84 0.45
72 16 0.09
73 18 0.10
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.20
Consensus pattern (69 bp):
TAAACCACAATCAAAAAATGAAAACGATTGAGATTAAATTATGAGTCAAAAAATGAAAATGATAG
GGAT
Found at i:3255546 original size:69 final size:69
Alignment explanation
Indices: 3255385--3255564 Score: 170
Period size: 69 Copynumber: 2.6 Consensus size: 69
3255375 CACAAGTCAG
* * * * *
3255385 AAAATGAAAGCGATC-GACATTAAATTATGAGTCATAAAATGAAAAATGACTGGGATTATACCAC
1 AAAATGAAAACGA-CAGAGATTAAA-TATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACAAC
3255449 GAATCAA
63 GAATCAA
* **
3255456 AAAATGAAAATGATTGAGATTAAATAATGAGTCAAAAAAT-AAAATGA-TAGGGATTAAACAAC-
1 AAAATGAAAACGACAGAGATTAAAT-ATGAGTCAAAAAATAAAAATGACT-GGGATTAAACAACG
**
3255518 ATATTGA
64 A-ATCAA
*
3255525 AAAATGAAAACGACAGGGATTAAAGTATGAGTCAAAAAAT
1 AAAATGAAAACGACAGAGATTAAA-TATGAGTCAAAAAAT
3255565 GTAAAACAAT
Statistics
Matches: 91, Mismatches: 13, Indels: 12
0.78 0.11 0.10
Matches are distributed among these distances:
68 2 0.02
69 55 0.60
70 2 0.02
71 32 0.35
ACGTcount: A:0.52, C:0.08, G:0.17, T:0.22
Consensus pattern (69 bp):
AAAATGAAAACGACAGAGATTAAATATGAGTCAAAAAATAAAAATGACTGGGATTAAACAACGAA
TCAA
Found at i:3255619 original size:37 final size:36
Alignment explanation
Indices: 3255578--3255670 Score: 109
Period size: 34 Copynumber: 2.6 Consensus size: 36
3255568 AAACAATGGG
*
3255578 GATTAAACCACAAGTCAAAAAAAGCGAAAATGATTAA
1 GATTAAACCACAAGTCAAAAAAA-CGAAAATGACTAA
* * *
3255615 GATTAAACCACATGTC--AAAAATGAAAATGACTAG
1 GATTAAACCACAAGTCAAAAAAACGAAAATGACTAA
* *
3255649 GATTAAATCTCAAGTCAAAAAA
1 GATTAAACCACAAGTCAAAAAA
3255671 TAAAAACGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
34 23 0.49
35 5 0.11
36 4 0.09
37 15 0.32
ACGTcount: A:0.54, C:0.14, G:0.13, T:0.19
Consensus pattern (36 bp):
GATTAAACCACAAGTCAAAAAAACGAAAATGACTAA
Found at i:3255897 original size:104 final size:103
Alignment explanation
Indices: 3255491--3255992 Score: 303
Period size: 104 Copynumber: 4.8 Consensus size: 103
3255481 AATGAGTCAA
* * *
3255491 AAAAT-AAAATGATAGGGATTAAACAACATA--TT-GAAAAATGAAAACGACAGGGATTAAAGT-
1 AAAATAAAAATGATAGAGATTAAAC--CATAGGTTAG-AAAATGAAAACGACTGAGATTAAA-TC
* ** *
3255551 ATGAGTCAAAAAATGTAAAACAATGGGGATTAAACCACAAGTCA-
62 ACGAGTCAAAAAATG-AAAACAA--CAGATTAAACCACAAGTTAG
* * * * *
3255595 AAAAAAGCGAAAATGATTA-AGATTAAACCACATGTCA-AAAATGAAAATGACT-AGGATTAAAT
1 AAAATA---AAAATGA-TAGAGATTAAACCATAGGTTAGAAAATGAAAACGACTGA-GATTAAAT
* * * * * *
3255657 CTCAAGTCAAAAAATAAAAACGACCAGCATTAAACCATAAGTCAG
61 CACGAGTCAAAAAATGAAAAC-AACAG-ATTAAACCACAAGTTAG
** * ** * ** *
3255702 AAAATAAAAATGACT-CTGATTAAATCATAGGCCAGAAAATG-AAATGACCCAGATTAAATCATG
1 AAAATAAAAATGA-TAGAGATTAAACCATAGGTTAGAAAATGAAAACGACTGAGATTAAATCACG
* * * * * *
3255765 GGCCAAAAACTGAAAACGACCAAGATTAAACCATAGGTTAG
65 AGTCAAAAAATGAAAAC-AAC-AGATTAAACCACAAGTTAG
* * *
3255806 AAAATGAAAATGATAGGGATTAAACCATGGGTTAGAAAATGAAAACGACTGAGATTAAATCACGA
1 AAAATAAAAATGATAGAGATTAAACCATAGGTTAGAAAATGAAAACGACTGAGATTAAATCACGA
* * *
3255871 GTCAAAAAATGAAAACAACGGTATTAAATCACAAGCTAG
66 GTCAAAAAATGAAAACAACAG-ATTAAACCACAAGTTAG
* * * *
3255910 AGAAATAAAAATGAT-GAAATTAAA-TA-ACGAGTTAGAAAATGAAAACGATTGAGATTAAACCA
1 A-AAATAAAAATGATAGAGATTAAACCATA-G-GTTAGAAAATGAAAACGACTGAGATTAAATCA
* * *
3255972 CGAATCAGAAAATGTAAACAA
63 CGAGTCAAAAAATGAAAACAA
3255993 TAATGAAAAT
Statistics
Matches: 313, Mismatches: 62, Indels: 46
0.74 0.15 0.11
Matches are distributed among these distances:
103 4 0.01
104 176 0.56
105 54 0.17
106 24 0.08
107 37 0.12
108 16 0.05
109 2 0.01
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (103 bp):
AAAATAAAAATGATAGAGATTAAACCATAGGTTAGAAAATGAAAACGACTGAGATTAAATCACGA
GTCAAAAAATGAAAACAACAGATTAAACCACAAGTTAG
Found at i:3257186 original size:41 final size:41
Alignment explanation
Indices: 3257119--3257199 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
3257109 TAGAGAAGTA
*
3257119 AAAATGATTGAAATTAAATCATGAGTC-AGAAAATGAAAATG
1 AAAATGATTGAAATTAAATCACGAGTCTA-AAAATGAAAATG
* * *
3257160 AAAATTATTGAAATTAAATTACGAGTCTAAAATTGAAAAT
1 AAAATGATTGAAATTAAATCACGAGTCTAAAAATGAAAAT
3257200 AACTGAGATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 34 0.97
42 1 0.03
ACGTcount: A:0.53, C:0.05, G:0.14, T:0.28
Consensus pattern (41 bp):
AAAATGATTGAAATTAAATCACGAGTCTAAAAATGAAAATG
Found at i:3257420 original size:71 final size:70
Alignment explanation
Indices: 3257292--3257423 Score: 174
Period size: 71 Copynumber: 1.9 Consensus size: 70
3257282 ACCTTGAATG
* ** * * *
3257292 AGAAAATGAAAACCGCCAGGATTAAACCATGGGTCAAAAAATGAAAGCGATCGAGATTAAACGAT
1 AGAAAATGAAAAACGCCAGGATTAAACCATGAATCAAAAAACGAAAACGATCAAGATTAAACGAT
3257357 GAGTC
66 GAGTC
* * *
3257362 AGAAAATGAAAAACGATCGGGATTATACCATGAATCAAAAAACGAAAACGATCAAGATTAAA
1 AGAAAATGAAAAACG-CCAGGATTAAACCATGAATCAAAAAACGAAAACGATCAAGATTAAA
3257424 TCACGAGTAA
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
70 14 0.27
71 38 0.73
ACGTcount: A:0.50, C:0.14, G:0.20, T:0.16
Consensus pattern (70 bp):
AGAAAATGAAAAACGCCAGGATTAAACCATGAATCAAAAAACGAAAACGATCAAGATTAAACGAT
GAGTC
Found at i:3257453 original size:32 final size:34
Alignment explanation
Indices: 3257399--3257491 Score: 86
Period size: 36 Copynumber: 2.7 Consensus size: 34
3257389 CCATGAATCA
* *
3257399 AAAAACGAAAACGATCA-AGATTAAAT-CACG-AG
1 AAAAATGAAAACGA-CAGGGATTAAATACACGCAG
* *
3257431 TAAAA-GAAAAATGACAGGGATTAAATAACACGTCAG
1 AAAAATG-AAAACGACAGGGATTAAAT-ACACG-CAG
3257467 AAAAATGAAAACGACAGGGATTAAA
1 AAAAATGAAAACGACAGGGATTAAA
3257492 GCATAAGTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
31 3 0.06
32 18 0.37
34 4 0.08
36 23 0.47
37 1 0.02
ACGTcount: A:0.56, C:0.12, G:0.18, T:0.14
Consensus pattern (34 bp):
AAAAATGAAAACGACAGGGATTAAATACACGCAG
Found at i:3257587 original size:35 final size:35
Alignment explanation
Indices: 3256149--3257588 Score: 319
Period size: 35 Copynumber: 40.9 Consensus size: 35
3256139 AACCACCAAG
* * ** *
3256149 GATTAAA-CATGAGTCAAAAAATGAAAGTGATTGG
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * * * *
3256183 GATTAAATAATGACTCAAAAAATTAAAAACGATCGA
1 GATTAAATCACGAGTCAAAAAA-TGAAAATGACCGA
* * *
3256219 GATTATA-CTAC-ATGTCAAAAAATAAAAATGATC-A
1 GATTAAATC-ACGA-GTCAAAAAATGAAAATGACCGA
* * * ***
3256253 GGATTAAAGCACGAGTCAAAAACTAAAAAT-AATAA
1 -GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
** *
3256288 GGATTAAA-CAACGCA-TCAAAAAATGAAAATGAAAGG
1 -GATTAAATC-ACG-AGTCAAAAAATGAAAATGACCGA
* * ** **
3256324 GATTAAA--GCGAGTTAAAAAAT-ATAAAACAATGA
1 GATTAAATCACGAGTCAAAAAATGA-AAATGACCGA
* ** * * *
3256357 GATTAAACCATAAGTCAAAAACT-AAAATTACTGA
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* ** *
3256391 GATTTAAACCACGAGTCAAAAAATGAAAACAATCGA
1 GA-TTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * * *
3256427 AATTAAATGACAAGTCAAAAAAAGAAAATGACTG-
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
*
3256461 GCATTAAATCATGAGTCAAAGAAA-GAAAAATGACC-A
1 G-ATTAAATCACGAGTCAAA-AAATG-AAAATGACCGA
* * * * *
3256497 GAATCAAATCATGAGTTAGAAAATGAAAATGA-CTA
1 G-ATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * * *
3256532 GGATTAAACCACTAGTCAAGAAATGGAAATGACCAA
1 -GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * * ** * *
3256568 AATTTAATCATC-AGTTAGAAAACAAAAATAACCAA
1 GATTAAATCA-CGAGTCAAAAAATGAAAATGACCGA
* * * * *
3256603 AATTAAACCACGAGTCTAAAACTGAAAATGA-CTA
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * ** * *
3256637 GGATTAAA-CAATGAGTCAAAAAATTAAAACAACAGG
1 -GATTAAATC-ACGAGTCAAAAAATGAAAATGACCGA
* * ** * *
3256673 GATTAAA-CTACAAGTTAGCAAAT-AAAACGACTGA
1 GATTAAATC-ACGAGTCAAAAAATGAAAATGACCGA
* * * ** **
3256707 GATGAAACCACCAGTCAAAAAATGAAAAACATTTGA
1 GATTAAATCACGAGTCAAAAAATGAAAATGA-CCGA
* * * * ** * *
3256743 GATTAAACCATGAGTCAGAAAATGAAGACAACAGG
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * * * *
3256778 GATTAAACCATGAATTAGAGAAATAAAAATGACC-A
1 GATTAAATCACGAGTCA-AAAAATGAAAATGACCGA
* * *
3256813 GAATTAAATCACGAGTCAAAAAATGAAAACGA-TGG
1 G-ATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* *
3256848 GAATTAAACCACGAGTCAAAAAATGAAAATGACCAA
1 G-ATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * *
3256884 AATTAAATCACGAGTCAAAAAATAAAAATGATC-A
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * * * *
3256918 GGATTAAAACAC-ATATTAGAAAATAAAAATGACCTA
1 -GATTAAATCACGA-GTCAAAAAATGAAAATGACCGA
**
3256954 GATTAAATCACGAGTCAAAAAATGAAAATGA-TTA
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * * * ** *
3256988 GGATTTAACCATGGGTCAAAAAAAGAAAAAAACTGA
1 -GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * * * * * *
3257024 TATTAAACCATGGGTTAGAAAATGAAAACGATCGA
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * *
3257059 GATTAAATCATGAGTCAAAAAATGAAAACGATCG-
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * * **
3257093 GTATTAAATCACAAG-CTAGAGAAGTAAAAATGATTGA
1 G-ATTAAATCACGAGTC-A-AAAAATGAAAATGACCGA
* * * **
3257130 AATTAAATCATGAGTCAGAAAATGAAAATGAAAATTATTGA
1 GATTAAATCACGAGTC----AA--AAAATGAAAATGACCGA
* * * * * *
3257171 AATTAAATTACGAGTCTAAAATTGAAAATAACTGA
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * **
3257206 GATTAAAAT-GCGAGTTAAAAAATGAAAACAACC-A
1 GATT-AAATCACGAGTCAAAAAATGAAAATGACCGA
* * * ** *
3257240 GAATTAAAGCACAAGTCAGAAAATGAAAATGATTGC
1 G-ATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * ** * * * *
3257276 GACTATACCTTGAATGAGAAAATGAAAACCG-CC-A
1 GATTAAATCACGAGTCAAAAAATGAAAA-TGACCGA
* * * ** *
3257310 GGATTAAACCATGGGTCAAAAAATGAAAGCGATCGA
1 -GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * * *
3257346 GATTAAA-CGATGAGTCAGAAAATGAAAAACGATCGG
1 GATTAAATC-ACGAGTCAAAAAATG-AAAATGACCGA
* * * * * * * *
3257382 GATTATACCATGAATCAAAAAACGAAAACGATCAA
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * *
3257417 GATTAAATCACGAGT-AAAAGA--AAAATGACAGG
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* * * *
3257449 GATTAAATAAC-ACGTCAGAAAAATGAAAACGACAGG
1 GATTAAATCACGA-GTCA-AAAAATGAAAATGACCGA
* ** * * *
3257485 GATTAAAGCATAAGTTAAAAAATGTAAAACATTA--GC
1 GATTAAATCACGAGTCAAAAAATG--AAA-ATGACCGA
* * * *
3257521 GATTAAACCACAAGTTAAAAAGTGAAAATGACCGA
1 GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
* *
3257556 GATTAAATCACGAGTTAGAAAATGAAAATGACC
1 GATTAAATCACGAGTCAAAAAATGAAAATGACC
3257589 ATGATTTATG
Statistics
Matches: 1045, Mismatches: 286, Indels: 149
0.71 0.19 0.10
Matches are distributed among these distances:
31 1 0.00
32 20 0.02
33 27 0.03
34 74 0.07
35 665 0.64
36 220 0.21
37 7 0.01
38 2 0.00
39 1 0.00
40 1 0.00
41 27 0.03
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (35 bp):
GATTAAATCACGAGTCAAAAAATGAAAATGACCGA
Found at i:3257601 original size:19 final size:19
Alignment explanation
Indices: 3257577--3257613 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
3257567 GAGTTAGAAA
*
3257577 ATGAAAATGACCATGATTT
1 ATGAAAATGACAATGATTT
3257596 ATGAAAATGACAATGATT
1 ATGAAAATGACAATGATT
3257614 AAATGATGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.08, G:0.16, T:0.30
Consensus pattern (19 bp):
ATGAAAATGACAATGATTT
Found at i:3257905 original size:35 final size:36
Alignment explanation
Indices: 3257865--3258071 Score: 178
Period size: 35 Copynumber: 5.9 Consensus size: 36
3257855 AAAAACAACT
*
3257865 GGATTAAA-CATCGAGTCAGAAAATTAAAATGATAA
1 GGATTAAACCATCGAGTCAGAAAATAAAAATGATAA
* * * **
3257900 AGATTAAACCAT-GAGTCAGAGAATGAAAATGACCA
1 GGATTAAACCATCGAGTCAGAAAATAAAAATGATAA
* * *
3257935 GGATGAAACCA-CTAGTCAAAAAATGAAAAATGATAA
1 GGATTAAACCATCGAGTCAGAAAAT-AAAAATGATAA
* * **
3257971 GGA-TAAACCAT-GAGTCAGAAAATGAAGACAATAA
1 GGATTAAACCATCGAGTCAGAAAATAAAAATGATAA
* * * *
3258005 GGATTAAATCA-CAAGTCAGAAAATAAAAACGATCA
1 GGATTAAACCATCGAGTCAGAAAATAAAAATGATAA
*
3258040 GGATTAATCCA-CGAGTCA-AAATATAAAAATGA
1 GGATTAAACCATCGAGTCAGAAA-ATAAAAATGA
3258072 GTCAAAGAAT
Statistics
Matches: 135, Mismatches: 30, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
34 13 0.10
35 108 0.80
36 14 0.10
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.18
Consensus pattern (36 bp):
GGATTAAACCATCGAGTCAGAAAATAAAAATGATAA
Found at i:3258042 original size:105 final size:104
Alignment explanation
Indices: 3257869--3258071 Score: 237
Period size: 105 Copynumber: 1.9 Consensus size: 104
3257859 ACAACTGGAT
* ** ** * * *
3257869 TAAACATCGAGTCAGAAAATTAAAATGATAAAGATTAAACCATGAGTCAGAGAATGAAAATGACC
1 TAAACATCGAGTCAGAAAATGAAAACAATAAAGATTAAACCACAAGTCAGAAAATAAAAACGACC
*
3257934 AGGATGAAACCACTAGTCAAAAAATGAAAAATGATAAGGA
66 AGGATGAAACCACGAGTCAAAAAAT-AAAAATGATAAGGA
* * * *
3257974 TAAACCAT-GAGTCAGAAAATGAAGACAATAAGGATTAAATCACAAGTCAGAAAATAAAAACGAT
1 TAAA-CATCGAGTCAGAAAATGAAAACAATAAAGATTAAACCACAAGTCAGAAAATAAAAACGAC
* * *
3258038 CAGGATTAATCCACGAGTCAAAATATAAAAATGA
65 CAGGATGAAACCACGAGTCAAAAAATAAAAATGA
3258072 GTCAAAGAAT
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
104 8 0.10
105 70 0.86
106 3 0.04
ACGTcount: A:0.53, C:0.12, G:0.17, T:0.18
Consensus pattern (104 bp):
TAAACATCGAGTCAGAAAATGAAAACAATAAAGATTAAACCACAAGTCAGAAAATAAAAACGACC
AGGATGAAACCACGAGTCAAAAAATAAAAATGATAAGGA
Found at i:3258149 original size:34 final size:35
Alignment explanation
Indices: 3258079--3258189 Score: 127
Period size: 34 Copynumber: 3.2 Consensus size: 35
3258069 TGAGTCAAAG
**
3258079 AATGAAAATGATTGGGATTAAACCATGGGTTAGAA
1 AATGAAAATGATCAGGATTAAACCATGGGTTAGAA
*
3258114 AATGAAAATGATCAGGATTAAACCGT-GGTTAGAA
1 AATGAAAATGATCAGGATTAAACCATGGGTTAGAA
** * * * *
3258148 AATGAAAACAATCA-GATTAAATCACGAGTTAAAA
1 AATGAAAATGATCAGGATTAAACCATGGGTTAGAA
3258182 AATGAAAA
1 AATGAAAA
3258190 CTATCGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
33 8 0.12
34 34 0.52
35 23 0.35
ACGTcount: A:0.50, C:0.08, G:0.20, T:0.23
Consensus pattern (35 bp):
AATGAAAATGATCAGGATTAAACCATGGGTTAGAA
Found at i:3258190 original size:34 final size:35
Alignment explanation
Indices: 3258107--3258207 Score: 109
Period size: 34 Copynumber: 2.9 Consensus size: 35
3258097 TAAACCATGG
** *
3258107 GTTAGAAAATGAAAATGATCAGGATTAAA-C-CGTG
1 GTTAGAAAATGAAAACAATCA-GATTAAATCACGTA
3258141 GTTAGAAAATGAAAACAATCAGATTAAATCACG-A
1 GTTAGAAAATGAAAACAATCAGATTAAATCACGTA
* * *
3258175 GTTAAAAAATGAAAACTATCGGTATTAAATCAC
1 GTTAGAAAATGAAAACAATCAG-ATTAAATCAC
3258208 AAGCCAGGGA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
33 7 0.12
34 39 0.67
35 12 0.21
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.24
Consensus pattern (35 bp):
GTTAGAAAATGAAAACAATCAGATTAAATCACGTA
Found at i:3258583 original size:30 final size:31
Alignment explanation
Indices: 3258511--3258636 Score: 105
Period size: 33 Copynumber: 3.9 Consensus size: 31
3258501 AGTCAAAAAT
* * *
3258511 AAAAAAACGACAAGGATTATACCATGAGTCAA
1 AAAAAAATGACAAGGATTAAAACATGAGT-AA
3258543 AAATAAAATGACCAA-GATTAAAACATGAGT-A
1 AAA-AAAATGA-CAAGGATTAAAACATGAGTAA
*
3258574 AAAAAAATGACAAGGATT-AAACAATGCGTCAGA
1 AAAAAAATGACAAGGATTAAAAC-ATGAGT-A-A
* * *
3258607 AAATGAAATGACAGGGATTAAAGCATGAGT
1 AAA-AAAATGACAAGGATTAAAACATGAGT
3258637 CAGAAAATGT
Statistics
Matches: 77, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
29 7 0.09
30 16 0.21
31 4 0.05
32 3 0.04
33 23 0.30
34 21 0.27
35 3 0.04
ACGTcount: A:0.53, C:0.11, G:0.18, T:0.17
Consensus pattern (31 bp):
AAAAAAATGACAAGGATTAAAACATGAGTAA
Found at i:3258607 original size:135 final size:135
Alignment explanation
Indices: 3258451--3258699 Score: 310
Period size: 135 Copynumber: 1.8 Consensus size: 135
3258441 GAAAACCATT
*
3258451 AGGATTAAACCATGAGTCAGAAAATGAAAGTAATC-GGGAATTAAA-CGATGAGTCA-AAAATAA
1 AGGATTAAACAATGAGTCAGAAAATGAAA-TAA-CAGGG-ATTAAAGC-ATGAGTCAGAAAAT-A
* * ** *
3258513 AAAAACGACAAGGATTATACCATGAGTCAAAAA-T-AAAATGACCAAGATTAAAACATGAGTAAA
61 AAAAACAACAAGGATTAAACCACAAGTCAAAAAGTGAAAATGACCAAGAATAAAACATGAGTAAA
3258576 AAAAATGACA
126 AAAAATGACA
* * ** *
3258586 AGGATTAAACAATGCGTCAGAAAATGAAATGACAGGGATTAAAGCATGAGTCAGAAAATGTAGAA
1 AGGATTAAACAATGAGTCAGAAAATGAAATAACAGGGATTAAAGCATGAGTCAGAAAATAAAAAA
*
3258651 CAATAAGGATTAAACCACAAGTCAAAAAGTGAAAATGACCAAGAATAAA
66 CAACAAGGATTAAACCACAAGTCAAAAAGTGAAAATGACCAAGAATAAA
3258700 CAACGAGTCA
Statistics
Matches: 97, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
133 41 0.42
134 12 0.12
135 44 0.45
ACGTcount: A:0.53, C:0.11, G:0.18, T:0.17
Consensus pattern (135 bp):
AGGATTAAACAATGAGTCAGAAAATGAAATAACAGGGATTAAAGCATGAGTCAGAAAATAAAAAA
CAACAAGGATTAAACCACAAGTCAAAAAGTGAAAATGACCAAGAATAAAACATGAGTAAAAAAAA
TGACA
Found at i:3258618 original size:34 final size:33
Alignment explanation
Indices: 3258451--3258788 Score: 176
Period size: 35 Copynumber: 9.8 Consensus size: 33
3258441 GAAAACCATT
* *
3258451 AGGATTAAACCATGAGTCAGAAAATGAAAGTAATC-
1 AGGATTAAACAATGAGTCA-AAAATGAAA-TGA-CA
* * * *
3258486 GGGAATTAAACGATGAGTCAAAAATAAAAAAACGACA
1 AGG-ATTAAACAATGAGTCAAAAAT---GAAATGACA
* * *
3258523 AGGATTATACCATGAGTCAAAAATAAAATGACCA
1 AGGATTAAACAATGAGTCAAAAATGAAATGA-CA
3258557 A-GATTAAA-ACATGAGT-AAAAA--AAATGACA
1 AGGATTAAACA-ATGAGTCAAAAATGAAATGACA
*
3258586 AGGATTAAACAATGCGTCAGAAAATGAAATGACA
1 AGGATTAAACAATGAGTCA-AAAATGAAATGACA
* ** *
3258620 GGGATTAAAGC-ATGAGTCAGAAAATGTAGAACAATA
1 AGGATTAAA-CAATGAGTCA-AAAATG-A-AATGACA
* **
3258656 AGGATTAAACCACAAGTCAAAAAGTGAAAATGACCA
1 AGGATTAAACAATGAGTCAAAAA-TG-AAATGA-CA
* * * *
3258692 A-GAATAAACAACGAGTCAAAAATTGAAAACGACC
1 AGGATTAAACAATGAGTCAAAAA-TG-AAATGACA
*
3258726 AGGATTAAA-GATGAGTCAAAAAATGAAAATGATCA
1 AGGATTAAACAATGAGTC-AAAAATG-AAATGA-CA
*
3258761 A-GATTAAACCACT-AGTCAAGAAATGAAA
1 AGGATTAAA-CAATGAGTCAA-AAATGAAA
3258789 AATAAATAGA
Statistics
Matches: 241, Mismatches: 37, Indels: 51
0.73 0.11 0.16
Matches are distributed among these distances:
29 3 0.01
30 18 0.07
31 2 0.01
32 9 0.04
33 18 0.07
34 61 0.25
35 65 0.27
36 59 0.24
37 3 0.01
38 3 0.01
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.17
Consensus pattern (33 bp):
AGGATTAAACAATGAGTCAAAAATGAAATGACA
Found at i:3258618 original size:64 final size:63
Alignment explanation
Indices: 3258511--3258636 Score: 164
Period size: 63 Copynumber: 2.0 Consensus size: 63
3258501 AGTCAAAAAT
* *
3258511 AAAAAAACGACAAGGATTATACCATGAGTCAAAAATAAAATGACCA-AGATTAAAACATGAGTA
1 AAAAAAACGACAAGGATTAAACAATGAGTCAAAAATAAAATGA-CAGAGATTAAAACATGAGTA
* * * * *
3258574 AAAAAAATGACAAGGATTAAACAATGCGTCAGAAAATGAAATGACAGGGATTAAAGCATGAGT
1 AAAAAAACGACAAGGATTAAACAATGAGTCA-AAAATAAAATGACAGAGATTAAAACATGAGT
3258637 CAGAAAATGT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
63 29 0.54
64 25 0.46
ACGTcount: A:0.53, C:0.11, G:0.18, T:0.17
Consensus pattern (63 bp):
AAAAAAACGACAAGGATTAAACAATGAGTCAAAAATAAAATGACAGAGATTAAAACATGAGTA
Found at i:3258713 original size:135 final size:135
Alignment explanation
Indices: 3258451--3258753 Score: 305
Period size: 135 Copynumber: 2.2 Consensus size: 135
3258441 GAAAACCATT
*
3258451 AGGATTAAACCATGAGTCAGAAAATGAAAGTAATCGGGAATTAAACGATGAGTCAAAAATAAAAA
1 AGGATTAAACAATGAGTCAGAAAATGAAAGTAATCGGGAATTAAACGATGAGTCAAAAATAAAAA
* * ** * *
3258516 AACGACAAGGATTATACCATGAGTCAAAAATAAAATGACCAAGATTAAAACATGAGTAAAAAAAA
66 AACAACAAGGATTAAACCACAAGTCAAAAATAAAATGACCAAGAATAAAACACGAGTAAAAAAAA
3258581 TGACA
131 TGACA
* * *
3258586 AGGATTAAACAATGCGTCAGAAAATGAAA-TGA-CAGGG-ATTAAA-GCATGAGTCAGAAAAT-G
1 AGGATTAAACAATGAGTCAGAAAATGAAAGTAATC-GGGAATTAAACG-ATGAGTCA-AAAATAA
* * *
3258646 TAGAACAATAAGGATTAAACCACAAGTCAAAAAGTGAAAATGACCAAGAAT-AAACAACGAGTCA
63 AAAAACAACAAGGATTAAACCACAAGTCAAAAA-T-AAAATGACCAAGAATAAAAC-ACGAGT--
* *
3258710 AAAATTGAAAACGACC
123 AAAA---AAAATGACA
* *
3258726 AGGATTAAA-GATGAGTCAAAAAATGAAA
1 AGGATTAAACAATGAGTCAGAAAATGAAA
3258754 ATGATCAAGA
Statistics
Matches: 139, Mismatches: 18, Indels: 18
0.79 0.10 0.10
Matches are distributed among these distances:
132 1 0.01
133 41 0.29
134 15 0.11
135 46 0.33
137 4 0.03
139 16 0.12
140 16 0.12
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.17
Consensus pattern (135 bp):
AGGATTAAACAATGAGTCAGAAAATGAAAGTAATCGGGAATTAAACGATGAGTCAAAAATAAAAA
AACAACAAGGATTAAACCACAAGTCAAAAATAAAATGACCAAGAATAAAACACGAGTAAAAAAAA
TGACA
Found at i:3258990 original size:35 final size:35
Alignment explanation
Indices: 3258951--3259071 Score: 102
Period size: 35 Copynumber: 3.4 Consensus size: 35
3258941 TGAAACCACT
**
3258951 AGTCA-AAAATGAATAACAATTGGGATTAAACCGTG
1 AGTCAGAAAATGAA-AACAACAGGGATTAAACCGTG
* *
3258986 AGTCAGAAAATGAAGACAACAGGGATTAAACCATG
1 AGTCAGAAAATGAAAACAACAGGGATTAAACCGTG
* * * * * *
3259021 ACTCAGAGAAATAAAAATAACCA-GAATTAAATCATG
1 AGTCAGA-AAATGAAAACAA-CAGGGATTAAACCGTG
*
3259057 AGTTAGAAAATGAAA
1 AGTCAGAAAATGAAA
3259072 TTGATAGGAA
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
35 35 0.50
36 33 0.47
37 2 0.03
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (35 bp):
AGTCAGAAAATGAAAACAACAGGGATTAAACCGTG
Found at i:3259304 original size:35 final size:35
Alignment explanation
Indices: 3259214--3261316 Score: 595
Period size: 35 Copynumber: 59.4 Consensus size: 35
3259204 CACAAGTTAG
* * * * * *
3259214 AAAATGAAAATAATTGGGACTAAACCTTGAGTGAG
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
** * * *
3259249 AAAATGAAAACCA-CTAGGATTAAACCATGACTCAG
1 AAAATGAAAATGATC-GGGATTAAACCATGAGTCAA
** * *
3259284 AAAATGAAAGCGATCGGGATTAAACGATGAGTTAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * * *
3259319 AAAATGAAAAACGATAGGGATTATACCATGAGTTAA
1 AAAATG-AAAATGATCGGGATTAAACCATGAGTCAA
* * ** *
3259355 AAAATAAAAATGACCAAGATTAAAACATGAGTCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
** * *
3259390 AAAAT-AAAAGTGATAAGGATTAAACAATGCA-TCAG
1 AAAATGAAAA-TGATCGGGATTAAACCATG-AGTCAA
* * *
3259425 AAAATGAAAATGA-CAGGGATTAAAGCATGAGTTAG
1 AAAATGAAAATGATC-GGGATTAAACCATGAGTCAA
** * **
3259460 AAAATGTAAAACAATAAGGG-TTAAACCACAAGTCAA
1 AAAATG-AAAATGAT-CGGGATTAAACCATGAGTCAA
* * ** * * *
3259496 AAAGTGAAAATGACCAAGATTAAATCACGTGTCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * * *
3259531 AAAATGAAAAAT-ATCGAGATTCAACGATAAGTCAA
1 AAAATG-AAAATGATCGGGATTAAACCATGAGTCAA
* *
3259566 AAAATGAAAATGACCAGGATTAAACCACT-AGTCAA
1 AAAATGAAAATGATCGGGATTAAACCA-TGAGTCAA
* * * * *
3259601 GAAATGAAAACGA-CTAGAATTAAATCATGAGTCAAA
1 AAAATGAAAATGATC-GGGATTAAACCATGAGTC-AA
* * *** * ** *
3259637 AAAATAAAAATGACCAAAATTAAATCACAAGTCTA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * ** * **
3259672 AAACTAAAAACAACCAAGATTAAACCATGAGTCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * * * *
3259707 AAAATCAAAATGATAGGTATTAAACCATGAGTTAG
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * * * * ** *
3259742 AGAATGAAAAAGACCGAGATGAAACCACCAATCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
** * * *
3259777 AAAATGAAAAACAATCGGGATTAAACCACGAGTTAG
1 AAAATG-AAAATGATCGGGATTAAACCATGAGTCAA
* * * * * *
3259813 AAAATGAAGA-CAACAGGATTAAACCATGACTTAGA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCA-A
* * * * * * *
3259848 GAAATAAAAAT-AACTAGAATTAAATCATGAGTCAG
1 AAAATGAAAATGATC-GGGATTAAACCATGAGTCAA
*
3259883 AAAATGAAATTGAT-GGGAATTAAACCATGAGTCAA
1 AAAATGAAAATGATCGGG-ATTAAACCATGAGTCAA
* ** ** *
3259918 AAAATGAAAACGATCAAGATTAAATTATGAGTAAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * ** * *
3259953 AAAATAAAAAAGA-CTAAGATTAAACC-TCCAGTCAG
1 AAAATGAAAATGATC-GGGATTAAACCAT-GAGTCAA
* * * **
3259988 AAAATAAAAATGA-CTTGGATTAAATCACAAGTCAA
1 AAAATGAAAATGATC-GGGATTAAACCATGAGTCAA
* * * *
3260023 AAAATGAAAATGATCAGGATTAAACCATGGGTTAG
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * * *
3260058 AAAATGAAAATCATCAGGATTAAACCATG-GTTTAG
1 AAAATGAAAATGATCGGGATTAAACCATGAG-TCAA
* * * * *
3260093 AAAATGAAAAT-AGTTGAGATTAAATCACGAGTTAA
1 AAAATGAAAATGA-TCGGGATTAAACCATGAGTCAA
** * ** *
3260128 AAAATGAAAACT-ATCGATATTAAATCACAAGCCAGA
1 AAAATGAAAA-TGATCGGGATTAAACCATGAGTCA-A
* * ** * * *
3260164 GAAATAAAAATGATCGAAAGTAAATCACGAGTCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * * ** *
3260199 AAAATAAAAACT-ATAGAGATTAAACCACAAGTCAG
1 AAAATGAAAA-TGATCGGGATTAAACCATGAGTCAA
** *** * * *
3260234 AAAATGAAAAAAATAATGA-AAATTACCA-GAATTAA
1 AAAATGAAAATGATCGGGATTAA--ACCATGAGTCAA
* * * * *** *
3260269 ATTACGAGTCAGAAAATCAAAGTGACCGAGATCAAAATGTGAGT-TA
1 A--A--AAT--G---A--AAA-TGATCGGGATTAAACCATGAGTCAA
* * * * * * * *
3260315 AAAATTAAAGTGATTGGAATTAAAGCATAAGTTAG
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * * * * *
3260350 AAAATGACAATGATTGGGACTAAACCCTGAGTGAG
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* ** * ** *
3260385 AAAACGAAAACCACCAAGATTAAACCATGAGTCAG
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
** ** *
3260420 AAAATGAAAGCGATCGGGATTAAATGATGACTCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* *
3260455 AAAATGAAAAATGA-CAGGGTTTATACCATGAGTCAA
1 AAAATG-AAAATGATC-GGGATTAAACCATGAGTCAA
* * * *
3260491 AAAATAAAAATGACCGAGATTAAAACATGAGTCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * * * *
3260526 AAAATAAAAATGA-CAAGGATTAAACAATGTGTCAG
1 AAAATGAAAATGATC-GGGATTAAACCATGAGTCAA
* * *
3260561 AAAATGAAAATGA-CAGGGATTAAAGCATGAGTTAG
1 AAAATGAAAATGATC-GGGATTAAACCATGAGTCAA
** ** *
3260596 AAAATGTAAAACAATAAGGATTAAACCATAAGTCAA
1 AAAATG-AAAATGATCGGGATTAAACCATGAGTCAA
* * * * ** *
3260632 AAAGTGACAATGACCGAGATTAAACTTTAAGTCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * * * *
3260667 AAAATGAAAACGACCAGGATTCAACGATGAGTCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* *
3260702 AAAATGAAAATGACCAGGATTAAACCACT-AGTCAA
1 AAAATGAAAATGATCGGGATTAAACCA-TGAGTCAA
* * *** * **
3260737 GAAATGAAAATGACCAAAATTAAATCACAAGTCAGA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCA-A
* * ** * ** *
3260773 AAAATAAAAATGACCGAAATTAAATCACAAGTCTA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* ** **
3260808 AAATTGAAAACAATCAAGATTAAACCATGAGTCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * ** * *
3260843 AAAATGAAAATGA-CAGGTATTGAATTATGAGTTAG
1 AAAATGAAAATGATC-GGGATTAAACCATGAGTCAA
** * * **
3260878 AGGATGAAAATGA-CTGAGATGAAACCACCAGTCAA
1 AAAATGAAAATGATC-GGGATTAAACCATGAGTCAA
** * * * *
3260913 AAAATGAAAAACAATTGGGATTAAACCGTGAGTTAG
1 AAAATG-AAAATGATCGGGATTAAACCATGAGTCAA
* * * * * *
3260949 ACAATGAAGA-CAACAGGGATTGAACCATGACTCAA
1 AAAATGAAAATGATC-GGGATTAAACCATGAGTCAA
* * * * *
3260984 AGAAATAAAAAT-AACTAGAATTAAATCATGAGTCAA
1 A-AAATGAAAATGATC-GGGATTAAACCATGAGTCAA
* * * *
3261020 AAAATG-AAATCAAT-GGGAATTAAACCACGAGCCAG
1 AAAATGAAAAT-GATCGGG-ATTAAACCATGAGTCAA
* * * *
3261055 AAAATAAAAACGATCGAGATTAAATCATGAGTCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * ** *
3261090 AAAATAAAAAAGA-CTAAGATTAAAAGC-TCGAGTCAA
1 AAAATGAAAATGATC-GGGATT-AAACCAT-GAGTCAA
* *
3261126 AAAATGAAAATGATCAGGATTAAACCAT-AGGTTAA
1 AAAATGAAAATGATCGGGATTAAACCATGA-GTCAA
* * * * * * *
3261161 AAAATGAAATTAACCGAGATTAAATCACGAGTCAG
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
* * **
3261196 AAAATGAAAATGATCGGTATTAAATCACAAG-CTAGA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTC-A-A
* * *** * *
3261232 GAAATAAAAATGATCAAAATTAAATCACGAGTCAA
1 AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
** * * * *
3261267 AAAATGAAAACCATCGAGATTAAAACCACGAGTTAG
1 AAAATGAAAATGATCGGGATT-AAACCATGAGTCAA
3261303 AAAATGAAAATGAT
1 AAAATGAAAATGAT
3261317 AATGAAAATT
Statistics
Matches: 1529, Mismatches: 453, Indels: 171
0.71 0.21 0.08
Matches are distributed among these distances:
34 62 0.04
35 1054 0.69
36 384 0.25
37 8 0.01
39 2 0.00
41 1 0.00
42 2 0.00
44 2 0.00
46 6 0.00
47 6 0.00
48 2 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.20
Consensus pattern (35 bp):
AAAATGAAAATGATCGGGATTAAACCATGAGTCAA
Found at i:3259411 original size:141 final size:142
Alignment explanation
Indices: 3259264--3259540 Score: 348
Period size: 141 Copynumber: 2.0 Consensus size: 142
3259254 GAAAACCACT
* *
3259264 AGGATTAAACCATG-ACTCAGAAAATGAAAGCGATC-GGGATTAAA-CGATGAGTTAAAAAATGA
1 AGGATTAAACAATGCA-TCAGAAAATGAAAACGA-CAGGGATTAAAGC-ATGAGTTAAAAAATGA
* * ** * *
3259326 AAAACGAT-AGGGATTATACCATGAGTTAAAAAATAAAAATGACCAAGATTAAAACATGAGTCAA
63 AAAACAATAAGGG-TTAAACCACAAGTCAAAAAATAAAAATGACCAAGATTAAAACACGAGTCAA
3259390 AAAAT-AAAAGTGATA
127 AAAATGAAAAGTGATA
* * *
3259405 AGGATTAAACAATGCATCAGAAAATGAAAATGACAGGGATTAAAGCATGAGTTAGAAAATGTAAA
1 AGGATTAAACAATGCATCAGAAAATGAAAACGACAGGGATTAAAGCATGAGTTAAAAAATGAAAA
* * * *
3259470 ACAATAAGGGTTAAACCACAAGTCAAAAAGTGAAAATGACCAAGATTAAATCACGTGTCAAAAAA
66 ACAATAAGGGTTAAACCACAAGTCAAAAAATAAAAATGACCAAGATTAAAACACGAGTCAAAAAA
3259535 TGAAAA
131 TGAAAA
3259541 ATATCGAGAT
Statistics
Matches: 116, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
140 1 0.01
141 105 0.91
142 10 0.09
ACGTcount: A:0.52, C:0.10, G:0.18, T:0.19
Consensus pattern (142 bp):
AGGATTAAACAATGCATCAGAAAATGAAAACGACAGGGATTAAAGCATGAGTTAAAAAATGAAAA
ACAATAAGGGTTAAACCACAAGTCAAAAAATAAAAATGACCAAGATTAAAACACGAGTCAAAAAA
TGAAAAGTGATA
Found at i:3259570 original size:141 final size:139
Alignment explanation
Indices: 3259299--3259752 Score: 425
Period size: 141 Copynumber: 3.2 Consensus size: 139
3259289 GAAAGCGATC
* * * * *
3259299 GGGATTAAACGATGAGTTAAAAAATGAAAAACGATAGGGATTATACCATGAGTTAAAAAATAAAA
1 GGGATTAAACCATGAGTTAGAAAATGAAAAACAATAGGG-TTAAACCATGAGTCAAAAAATAAAA
* * * * *
3259364 ATGACCAAGATTAAAACATGAGTCAAAAAATAAAAGTGAT-AAGGATTAAACAATGCA-TCAGAA
65 ATGACCAAGATTAAATCACGAGTCAAAAAATAAAAAT-ATCAA-GATTAAACAAT-AAGTCAAAA
3259427 AATGAAAATGACA
127 AATGAAAATGACA
* * ** * *
3259440 GGGATTAAAGCATGAGTTAGAAAATGTAAAACAATAAGGGTTAAACCACAAGTCAAAAAGTGAAA
1 GGGATTAAACCATGAGTTAGAAAATGAAAAACAAT-AGGGTTAAACCATGAGTCAAAAAATAAAA
* * * *
3259505 ATGACCAAGATTAAATCACGTGTCAAAAAATGAAAAATATCGAGATTCAACGATAAGTCAAAAAA
65 ATGACCAAGATTAAATCACGAGTCAAAAAAT-AAAAATATCAAGATTAAACAATAAGTCAAAAAA
3259570 TGAAAATGACCA
129 TGAAAATGA-CA
* * ** *
3259582 -GGATTAAACCACT-AGTCA-AGAAATG-AAAACGACTAGAATTAAATCATGAGTCAAAAAAATA
1 GGGATTAAACCA-TGAGTTAGA-AAATGAAAAAC-AATAGGGTTAAACCATGAGTC-AAAAAATA
* * * * * * * *
3259643 AAAATGACCAAAATTAAATCACAAGTCTAAAACTAAAAACAACCAAGATTAAACCATGAGTCAAA
62 AAAATGACCAAGATTAAATCACGAGTCAAAAAATAAAAA-TATCAAGATTAAACAATAAGTCAAA
* *
3259708 AAATCAAAATGATA
126 AAATGAAAATGACA
* *
3259722 GGTATTAAACCATGAGTTAGAGAATGAAAAA
1 GGGATTAAACCATGAGTTAGAAAATGAAAAA
3259753 GACCGAGATG
Statistics
Matches: 253, Mismatches: 46, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
140 27 0.11
141 208 0.82
142 18 0.07
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.19
Consensus pattern (139 bp):
GGGATTAAACCATGAGTTAGAAAATGAAAAACAATAGGGTTAAACCATGAGTCAAAAAATAAAAA
TGACCAAGATTAAATCACGAGTCAAAAAATAAAAATATCAAGATTAAACAATAAGTCAAAAAATG
AAAATGACA
Found at i:3260188 original size:71 final size:71
Alignment explanation
Indices: 3260113--3260244 Score: 194
Period size: 71 Copynumber: 1.9 Consensus size: 71
3260103 TAGTTGAGAT
* * * * *
3260113 TAAATCACGAGTTAAAAAATGAAAACTATCGATATTAAATCACAAGCCAGAGAAAT-AAAAATGA
1 TAAATCACGAGTCAAAAAATAAAAACTATAGAGATTAAACCACAAGCCAGA-AAATGAAAAATGA
3260177 TCGAAAG
65 TCGAAAG
*
3260184 TAAATCACGAGTCAAAAAATAAAAACTATAGAGATTAAACCACAAGTCAGAAAATGAAAAA
1 TAAATCACGAGTCAAAAAATAAAAACTATAGAGATTAAACCACAAGCCAGAAAATGAAAAA
3260245 AATAATGAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
70 4 0.07
71 50 0.93
ACGTcount: A:0.56, C:0.13, G:0.13, T:0.18
Consensus pattern (71 bp):
TAAATCACGAGTCAAAAAATAAAAACTATAGAGATTAAACCACAAGCCAGAAAATGAAAAATGAT
CGAAAG
Found at i:3260549 original size:141 final size:141
Alignment explanation
Indices: 3260402--3260859 Score: 383
Period size: 141 Copynumber: 3.2 Consensus size: 141
3260392 AAACCACCAA
* *
3260402 GATTAAACCATGAGTCAGAAAATGAAAGCGATC-GGGATTAAATG-ATGACTCAAAAAATGAAAA
1 GATTAAACAATGAGTCAGAAAATGAAAACGA-CAGGGATTAAA-GCATGACTCAAAAAATGAAAA
** * * * * *
3260465 ATGACAGGGTTTATACCATGAGTCAAAAAATAAAAATGACCGAGATTAAAAC-ATGAGTCAAAAA
64 ACAACAAGGATTAAACCATAAGTCAAAAAATAAAAATGACCGAGATT-AAACTATAAGTCAAAAA
*
3260529 ATAAAAATGACAAG
128 ATAAAAACGACAAG
* * * * * *
3260543 GATTAAACAATGTGTCAGAAAATGAAAATGACAGGGATTAAAGCATGAGTTAGAAAATGTAAAAC
1 GATTAAACAATGAGTCAGAAAATGAAAACGACAGGGATTAAAGCATGACTCAAAAAATGAAAAAC
* * * * * *
3260608 AATAAGGATTAAACCATAAGTCAAAAAGTGACAATGACCGAGATTAAACTTTAAGTCAAAAAATG
66 AACAAGGATTAAACCATAAGTCAAAAAATAAAAATGACCGAGATTAAACTATAAGTCAAAAAATA
*
3260673 AAAACGACCAG
131 AAAACGACAAG
* * * * * * *
3260684 GATTCAACGATGAGTCAAAAAATGAAAATGACCA-GGATTAAACCACT-AGTCAAGAAATGAAAA
1 GATTAAACAATGAGTCAGAAAATGAAAACGA-CAGGGATTAAAGCA-TGACTCAAAAAATGAAAA
** * * * * * * *
3260747 TGACCAA-AATTAAATCACAAGTCAGAAAAATAAAAATGACCGAAATTAAA-TCACAAGTCTAAA
64 ACAACAAGGATTAAACCATAAGTCA-AAAAATAAAAATGACCGAGATTAAACT-ATAAGTCAAAA
* * *
3260810 ATTGAAAACAATCAA-
127 AATAAAAACGA-CAAG
* * *
3260825 GATTAAACCATGAGTCAAAAAATGAAAATGACAGG
1 GATTAAACAATGAGTCAGAAAATGAAAACGACAGG
3260860 TATTGAATTA
Statistics
Matches: 257, Mismatches: 51, Indels: 18
0.79 0.16 0.06
Matches are distributed among these distances:
140 23 0.09
141 229 0.89
142 5 0.02
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (141 bp):
GATTAAACAATGAGTCAGAAAATGAAAACGACAGGGATTAAAGCATGACTCAAAAAATGAAAAAC
AACAAGGATTAAACCATAAGTCAAAAAATAAAAATGACCGAGATTAAACTATAAGTCAAAAAATA
AAAACGACAAG
Found at i:3260671 original size:106 final size:101
Alignment explanation
Indices: 3260556--3260856 Score: 248
Period size: 106 Copynumber: 2.8 Consensus size: 101
3260546 TAAACAATGT
*
3260556 GTCAGAAAATGAAAATGACAGGGATTAAAGCATGAGTTAGAAAATGTAAAACAATAAGGATTAAA
1 GTCAAAAAATGAAAATGACAGGGATTAAA-CATGAGTTA-AAAATG-AAAACAATAAGGATTAAA
* * * **
3260621 CCATAAGTCAAAAAGTGACAATGACCGAGATTAAA-CTTTAA
63 CCAT-AGTCAAAAA-TGAAAATGACCAAAATTAAATC-ACAA
* * * ** **
3260662 GTCAAAAAATGAAAACGACCA-GGATTCAACGATGAGTCAAAAAATGAAAATGACCAGGATTAAA
1 GTCAAAAAATGAAAATGA-CAGGGATTAAAC-ATGAGT-TAAAAATGAAAACAATAAGGATTAAA
3260726 CCACTAGTCAAGAAATGAAAATGACCAAAATTAAATCACAA
63 CCA-TAGTCAA-AAATGAAAATGACCAAAATTAAATCACAA
* * ** ** *
3260767 GTCAGAAAAATAAAAATGACCGAAATTAAATCACAAGTCTAAAATTGAAAACAATCAA-GATTAA
1 GTCA-AAAAATGAAAATGACAGGGATTAAA-CATGAGT-TAAAAATGAAAACAAT-AAGGATTAA
3260831 ACCATGAGTCAAAAAATGAAAATGAC
62 ACCAT-AGTC-AAAAATGAAAATGAC
3260857 AGGTATTGAA
Statistics
Matches: 156, Mismatches: 27, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
105 49 0.31
106 100 0.64
107 7 0.04
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (101 bp):
GTCAAAAAATGAAAATGACAGGGATTAAACATGAGTTAAAAATGAAAACAATAAGGATTAAACCA
TAGTCAAAAATGAAAATGACCAAAATTAAATCACAA
Found at i:3260885 original size:141 final size:139
Alignment explanation
Indices: 3260485--3261153 Score: 444
Period size: 141 Copynumber: 4.7 Consensus size: 139
3260475 TTATACCATG
* * *
3260485 AGTCAAAAAATAAAAATGACCGAGATTAAAACATGAGTCAAAAAATAAAAATGACAAGGATTAAA
1 AGTCAAAAAATAAAAATGACCGAGATT-AAACATAAGTCAAAAAATGAAAACGACAA-GATTAAA
* * * * *
3260550 CAATGTGTCAGAAAATGAAAATGACAGGGATTAAAGCATGAGTTAGAAAATGTAAA--ACAATAA
64 CAATGAGTCAAAAAATGAAAATGACA-GGATTAAACCATGAGTTAGAGAATGAAAATGACAATAA
*
3260613 GGATTAAACCATA
128 -GATTAAACCACA
* * * * * *
3260626 AGTCAAAAAGTGACAATGACCGAGATTAAACTTTAAGTCAAAAAATGAAAACGACCAGGATTCAA
1 AGTCAAAAAATAAAAATGACCGAGATTAAAC-ATAAGTCAAAAAATGAAAACGA-CAAGATTAAA
* * *
3260691 CGATGAGTCAAAAAATGAAAATGACCAGGATTAAACCACT-AGTCA-AGAAATGAAAATGACCA-
64 CAATGAGTCAAAAAATGAAAATGA-CAGGATTAAACCA-TGAGTTAGAG-AATGAAAATGACAAT
*
3260753 AA-ATTAAATCACA
126 AAGATTAAACCACA
* * * * *
3260766 AGTCAGAAAAATAAAAATGACCGAAATTAAATCACAAGTCTAAAATTGAAAACAATCAAGATTAA
1 AGTCA-AAAAATAAAAATGACCGAGATTAAA-CATAAGTCAAAAAATGAAAACGA-CAAGATTAA
* * ** * *
3260831 ACCATGAGTCAAAAAATGAAAATGACAGGTATTGAATTATGAGTTAGAGGATGAAAATGAC--TG
63 ACAATGAGTCAAAAAATGAAAATGACAGG-ATTAAACCATGAGTTAGAGAATGAAAATGACAATA
* *
3260894 AGATGAAACCACC
127 AGATTAAACCACA
** ** * * * * * * * * * *
3260907 AGTCAAAAAATGAAAAACAATTGGGATTAAACCGTGAGTTAGACAATGAAGACAACAGGGATTGA
1 AGTCAAAAAAT-AAAAATGACCGAGATTAAA-CATAAGTCAAAAAATGAAAACGACA-AGATTAA
* * * * * * * * *
3260972 ACCATGACTCAAAGAAATAAAAATAACTAGAATTAAATCATGAGTCAAAAAATG-AAAT--CAAT
63 ACAATGAGTCAAA-AAATGAAAATGAC-AGGATTAAACCATGAGTTAGAGAATGAAAATGACAAT
** *
3261034 GGGAATTAAACCACG
126 AAG-ATTAAACCACA
* * * * * * *
3261049 AGCCAGAAAATAAAAACGATCGAGATTAAATCATGAGTCAAAAAATAAAAAAGACTAAGATTAAA
1 AGTCAAAAAATAAAAATGACCGAGATTAAA-CATAAGTCAAAAAATGAAAACGAC-AAGATTAAA
*
3261114 -AGCTCGAGTCAAAAAATGAAAATGATCAGGATTAAACCAT
64 CA-AT-GAGTCAAAAAATGAAAATGA-CAGGATTAAACCAT
3261154 AGGTTAAAAA
Statistics
Matches: 408, Mismatches: 95, Indels: 50
0.74 0.17 0.09
Matches are distributed among these distances:
139 1 0.00
140 33 0.08
141 304 0.75
142 65 0.16
143 5 0.01
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (139 bp):
AGTCAAAAAATAAAAATGACCGAGATTAAACATAAGTCAAAAAATGAAAACGACAAGATTAAACA
ATGAGTCAAAAAATGAAAATGACAGGATTAAACCATGAGTTAGAGAATGAAAATGACAATAAGAT
TAAACCACA
Found at i:3261026 original size:71 final size:70
Alignment explanation
Indices: 3260899--3261094 Score: 166
Period size: 71 Copynumber: 2.8 Consensus size: 70
3260889 GACTGAGATG
* * * * * * * * *
3260899 AAACCACCAGTCAAAAAATGAAAAACAATTGGGATTAAACCGTGAGTTAGACAATGAAGA-CAAC
1 AAACCACGAGCCAAAAAAT-AAAAACAATAGAGATTAAATCATGAGTCAAAAAATGAA-ATCAA-
3260963 AGGG-ATT
63 AGGGAATT
* * *
3260970 GAACCATGA-CTCAAAGAAATAAAAATAACTAGA-ATTAAATCATGAGTCAAAAAATGAAATCAA
1 AAACCACGAGC-CAAA-AAATAAAAACAA-TAGAGATTAAATCATGAGTCAAAAAATGAAATCAA
*
3261033 TGGGAATT
63 AGGGAATT
* * *
3261041 AAACCACGAGCCAGAAAATAAAAACGATCGAGATTAAATCATGAGTCAAAAAAT
1 AAACCACGAGCCAAAAAATAAAAACAATAGAGATTAAATCATGAGTCAAAAAAT
3261095 AAAAAAGACT
Statistics
Matches: 99, Mismatches: 19, Indels: 15
0.74 0.14 0.11
Matches are distributed among these distances:
69 3 0.03
70 36 0.36
71 53 0.54
72 7 0.07
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.18
Consensus pattern (70 bp):
AAACCACGAGCCAAAAAATAAAAACAATAGAGATTAAATCATGAGTCAAAAAATGAAATCAAAGG
GAATT
Found at i:3261147 original size:71 final size:69
Alignment explanation
Indices: 3261038--3261290 Score: 181
Period size: 71 Copynumber: 3.6 Consensus size: 69
3261028 ATCAATGGGA
* * * * *
3261038 ATTAAACCACGAGCCAGAAAATAAAAACGATCGAGATTAAATCAT-GAGTCAAAAAAT-AAAAAA
1 ATTAAAGCACGAGTCAAAAAATGAAAATGATCG-GATTAAATCATAG-GTCAAAAAATGAAAAAA
*
3261101 GACTAAG
64 -ACCAAG
* * * **
3261108 ATTAAAAGCTCGAGTCAAAAAATGAAAATGATCAGGATTAAACCATAGGTTAAAAAATGAAATTA
1 ATT-AAAGCACGAGTCAAAAAATGAAAATGATC-GGATTAAATCATAGGTCAAAAAATGAAAAAA
*
3261173 ACCGAG
64 ACCAAG
* * * * *
3261179 ATTAAATCACGAGTCAGAAAATGAAAATGATCGGTATTAAATCACAAG-CTAGAGAAAT-AAAAA
1 ATTAAAGCACGAGTCAAAAAATGAAAATGATCGG-ATTAAATCATAGGTC-A-AAAAATGAAAAA
* * *
3261242 TGATCAAA
63 -AACCAAG
* **
3261250 ATTAAATCACGAGTCAAAAAATGAAAACCATCGAGATTAAA
1 ATTAAAGCACGAGTCAAAAAATGAAAATGATCG-GATTAAA
3261291 ACCACGAGTT
Statistics
Matches: 145, Mismatches: 29, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
69 2 0.01
70 43 0.30
71 93 0.64
72 7 0.05
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (69 bp):
ATTAAAGCACGAGTCAAAAAATGAAAATGATCGGATTAAATCATAGGTCAAAAAATGAAAAAAAC
CAAG
Found at i:3261373 original size:83 final size:82
Alignment explanation
Indices: 3261238--3261397 Score: 203
Period size: 83 Copynumber: 1.9 Consensus size: 82
3261228 TAGAGAAATA
* * * *
3261238 AAAATGATCAAAATTAAATCACGAGTCAAAAAATGAAAACCATCGAGATTAAAACCACGAGTTAG
1 AAAATGATCAAAATTAAATCACGAGTCAAAAAATGAAAACCACCAAAATT-AAACCACAAGTTAG
3261303 AAAATGAAAATGATAATG
65 AAAATGAAAATGATAATG
* * * * ** **
3261321 AAAATTATCAAAATTAAATTACTAGTCAGAAAATGAAAATGACCAAAATTAAAGTACAAGTTAGA
1 AAAATGATCAAAATTAAATCACGAGTCAAAAAATGAAAACCACCAAAATTAAACCACAAGTTAGA
3261386 AAATGAAAATGA
66 AAATGAAAATGA
3261398 CTGGGACTAA
Statistics
Matches: 65, Mismatches: 12, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
82 24 0.37
83 41 0.63
ACGTcount: A:0.56, C:0.10, G:0.13, T:0.21
Consensus pattern (82 bp):
AAAATGATCAAAATTAAATCACGAGTCAAAAAATGAAAACCACCAAAATTAAACCACAAGTTAGA
AAATGAAAATGATAATG
Found at i:3261557 original size:106 final size:106
Alignment explanation
Indices: 3261436--3261704 Score: 274
Period size: 106 Copynumber: 2.5 Consensus size: 106
3261426 AAAACCGCCA
* * ** * * *
3261436 AGATTAAACCACGAGTCAAAAAATAAAAGTGATTGGGATTAAACGATGAGTCAAAAAATGAAAAA
1 AGATTAAACCACGAGTCAAAAAATAAAAATCAAAGGGATCAAACAACGAGTCAAAAAATG-AAAA
* *
3261501 AGACCAG-GATTATACCACAAGTCAAAAAATG-AAAACAATCG
65 AGA-CAGAGATTAAACCAAAAGTCAAAAAATGTAAAACAATCG
* * *
3261542 AGATTAAATCACGAGTCAAAAAATAAAAATCAAAGGGATCAAACAACGCGTCAAAAAATGAAAAT
1 AGATTAAACCACGAGTCAAAAAATAAAAATCAAAGGGATCAAACAACGAGTCAAAAAATGAAAAA
* *
3261607 GACAGAGATTAAAGCAAAAGTCAAAAAATGTAAAACAATGG
66 GACAGAGATTAAACCAAAAGTCAAAAAATGTAAAACAATCG
* * * * * * * * * *
3261648 GGATTAATCCACAAGTTAAAAAGTGAAAAT-AATAGAGATTAAACCACAAGTCAAAAA
1 AGATTAAACCACGAGTCAAAAAATAAAAATCAA-AGGGATCAAACAACGAGTCAAAAA
3261705 TAAAAACGAT
Statistics
Matches: 134, Mismatches: 26, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
104 3 0.02
105 29 0.22
106 102 0.76
ACGTcount: A:0.55, C:0.13, G:0.16, T:0.17
Consensus pattern (106 bp):
AGATTAAACCACGAGTCAAAAAATAAAAATCAAAGGGATCAAACAACGAGTCAAAAAATGAAAAA
GACAGAGATTAAACCAAAAGTCAAAAAATGTAAAACAATCG
Found at i:3261595 original size:141 final size:140
Alignment explanation
Indices: 3261441--3261710 Score: 314
Period size: 141 Copynumber: 1.9 Consensus size: 140
3261431 CGCCAAGATT
* ** * **
3261441 AAACCACGAGTCAAAAAAT-AAAAGTGATTGGGATTAAA-CGATGAGTCAAAAAATG-AAAAAAG
1 AAACAACGAGTCAAAAAATGAAAA-TGACAGAGATTAAAGC-AAAAGTCAAAAAATGTAAAAAA-
* * *
3261503 ACCAGGATT-ATACCACAAGTCAAAAAATGAAAACAATCGAGATTAAATCACGAGTCAAAAAATA
63 ACCAGGATTAAT-CCACAAGTCAAAAAATGAAAACAATAGAGATTAAACCACAAGTC-AAAAATA
3261567 AAAATCAAAGGGATC
126 AAAATCAAAGGGATC
* * **
3261582 AAACAACGCGTCAAAAAATGAAAATGACAGAGATTAAAGCAAAAGTCAAAAAATGTAAAACAATG
1 AAACAACGAGTCAAAAAATGAAAATGACAGAGATTAAAGCAAAAGTCAAAAAATGTAAAAAAACC
* * * *
3261647 GGGATTAATCCACAAGTTAAAAAGTGAAAATAATAGAGATTAAACCACAAGTCAAAAATAAAAA
66 AGGATTAATCCACAAGTCAAAAAATGAAAACAATAGAGATTAAACCACAAGTCAAAAATAAAAA
3261711 CGATCGGTAT
Statistics
Matches: 108, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
140 11 0.10
141 85 0.79
142 12 0.11
ACGTcount: A:0.56, C:0.13, G:0.16, T:0.16
Consensus pattern (140 bp):
AAACAACGAGTCAAAAAATGAAAATGACAGAGATTAAAGCAAAAGTCAAAAAATGTAAAAAAACC
AGGATTAATCCACAAGTCAAAAAATGAAAACAATAGAGATTAAACCACAAGTCAAAAATAAAAAT
CAAAGGGATC
Found at i:3262014 original size:106 final size:103
Alignment explanation
Indices: 3261891--3264532 Score: 316
Period size: 105 Copynumber: 25.0 Consensus size: 103
3261881 TAAAAACAAG
* * * *
3261891 CAGGATTAAACCATGAGTCAAAAAATTAAAACGATACAGATTAAACCATGAGTTAGAAAATGAAA
1 CAGGATTAAACTATGAGTCAAAAAATGAAAACGATA-GGATTAAACCATGAGTCAGAAAATGAAA
* *
3261956 ATGACTTAGATGAAACCACTAGTCAGAAAATGAAAAATGA
65 AAGAC-TAGATTAAACCACTAGTCAGAAAATGAAAAATGA
* * *
3261996 CCAGGATTAAACTATGAGTCAAAAAATGAAGACAATGAGGATTAAACCATGAGTCAGAGAAATAA
1 -CAGGATTAAACTATGAGTCAAAAAATGAAAACGAT-AGGATTAAACCATGAGTCAGA-AAATGA
* * *
3262061 AAAAGACTAGAATTAAATCACGAGTGAGAAAATG-AAAATGA
63 AAAAGACTAG-ATTAAACCACTAGTCAGAAAATGAAAAATGA
** * * * * * * *
3262102 TGGGAATTAAACTATTAGTCAGAAAATGAAAATGATTGGGACTAAATCATGAGTCAAAAAATGAA
1 CAGG-ATTAAACTATGAGTCAAAAAATGAAAACGA-TAGGATTAAACCATGAGTCAGAAAATGAA
* * * *
3262167 AACGACCGAGATTAAACCA-TGGGTCAGAAAATG-AAAACGA
64 AAAGA-CTAGATTAAACCACT-AGTCAGAAAATGAAAAATGA
* * * * * * * * *
3262207 TCAAGA-TAAACCATG-GGCTAGAAAATGAAAACAACTTA-GATTAAATCACGAGTTAAAAAATG
1 -CAGGATTAAACTATGAGTC-AAAAAATGAAAACGA--TAGGATTAAACCATGAGTCAGAAAATG
* * * * * * *
3262269 GAAACGA-TCAGTATTAAATCACAAGCCAGAGAATTAAAAATGA
62 AAAAAGACT-AG-ATTAAACCACTAGTCAGAAAATGAAAAATGA
** * * * * * * *
3262312 TTGAAATTAAA-TCATGAGTTAGAAAATGAAAATGATCAAGATTAGACCATGAGTCAGAAAA-CA
1 CAG-GATTAAACT-ATGAGTCAAAAAATGAAAACGAT-AGGATTAAACCATGAGTCAGAAAATGA
** * *
3262375 AAAACGA-TAATGAAAATTATCAAAATTAAATTATGAGTCAGAAAATG-AAAATGTT
63 AAAA-GACT-A-G---A-T-T--AAA--CCA--CT-AGTCAGAAAATGAAAAATG-A
* *** * * ** * * * *
3262430 CAGGATCAAAACGTGAGTTAAAAAATGAAAATC-ACCAAAATTAAAGCACGAGTTAGAAAATGAT
1 CAGGATTAAACTATGAGTCAAAAAATGAAAA-CGA-TAGGATTAAACCATGAGTCAGAAAATGAA
* * * * *
3262494 AACGACTAGGA-CAGAA-CTCTGAGTGAGAAAAT--AAAATCCA
64 AAAGACTA-GATTA-AACCACT-AGTCAGAAAATGAAAAAT-GA
* ** ** *
3262534 CCAGGATTAAACCATGAGTCAAAAAATGAAAGTGATAGGGATTAAATAATGAGTCAAAAAATGAA
1 -CAGGATTAAACTATGAGTCAAAAAATGAAAACGATA-GGATTAAACCATGAGTCAGAAAATGAA
* * * * *
3262599 AATGACTGGGATTAAATCACGAGTCAAAAAAT-AAAAA-GA
64 AAAGACT-AGATTAAACCACTAGTCAGAAAATGAAAAATGA
* * * * * *
3262638 TA--A-T--GC-AT---T-GAAAAATGAAAACGATAGGGATTAAAGCACGAGTCAAAAAATGTAA
1 CAGGATTAAACTATGAGTCAAAAAATGAAAACGATA-GGATTAAACCATGAGTCAGAAAATG-AA
* * ** * *
3262693 AACGTCGGGGCTTAAA-C-CTAAGTCA-AAACAAG-AAAATGA
64 AAAGAC-TAGATTAAACCACT-AGTCAGAAA-ATGAAAAATGA
* * * **
3262732 CCAAGATTAAA-TCATGAGTCAAAAAATGAAAATGATTGGAATTAAACCACAAGTCA-AAAATGA
1 -CAGGATTAAACT-ATGAGTCAAAAAATGAAAACGATAGG-ATTAAACCATGAGTCAGAAAATGA
* * ** ** *
3262795 CAATGACCGGCATTAAATGACGAGTCA-AAGGAAT-AAAAATGA
63 AAAAGACTAG-ATTAAACCACTAGTCAGAA--AATGAAAAATGA
* * * * * * *
3262837 CTTA-AATCAAA-TAACGAGTCTAGAAAATAAAAATGATCAGGATTAAACCACT-AGT-AAAGAA
1 C--AGGATTAAACT-ATGAGTC-AAAAAATGAAAACGAT-AGGATTAAACCA-TGAGTCAGA-AA
* * *
3262898 ATGAAAATGA-TCAGAATTAAATCA-TGAGTTAGAAAAT-AAAAATGA
59 ATGAAAAAGACT-AG-ATTAAACCACT-AGTCAGAAAATGAAAAATGA
** * * * * * * * * * * *
3262943 CCAAAATTAAATTACGAGTCTAAAACTAAAAATGATCGAGATTAAACCACGAGTAAAAAAATTAA
1 -CAGGATTAAACTATGAGTCAAAAAATGAAAACGATAG-GATTAAACCATGAGTCAGAAAATGAA
*
3263008 AACGA-TAGGGATTAAACCA-TGAGTCA-AAGAAT-AAAAATGA
64 AAAGACTA--GATTAAACCACT-AGTCAGAA-AATGAAAAATGA
* * * * ** *
3263048 CCAAGATGAAGCCACCAGTCAAAAAATGAAAAACGATCAGGATTAAACCACGAGTCAGAAAATGA
1 -CAGGATTAAACTATGAGTCAAAAAATG-AAAACGAT-AGGATTAAACCATGAGTCAGAAAATGA
* * * *
3263113 AGATA-A-TGGGAACTAAACCA-TGAGTCGGAGAAAT-AAAAATGA
63 A-AAAGACT-AG-ATTAAACCACT-AGTCAGA-AAATGAAAAATGA
** ** * * * *
3263155 CCAAAATTAAA-TCACAAGTCAGAAAATGAAAA-TAGTGGGAATTAAACCATGAGTCAAAAAAT-
1 -CAGGATTAAACT-ATGAGTCAAAAAATGAAAACGA-TAGG-ATTAAACCATGAGTCAGAAAATG
*
3263217 AAAAACGACTGGGATTAAACCA-TGAGTCAGAAAAT-AAAAATGA
62 AAAAA-GACT-AGATTAAACCACT-AGTCAGAAAATGAAAAATGA
* * * * * * *
3263260 CCTA-GATTAAA-TCACGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGGGTTAGAAAATT
1 -C-AGGATTAAACT-ATGAGTCAAAAAATGAAAACGAT-AGGATTAAACCATGAGTCAGAAAATG
* ** * * *
3263323 AAAATGACCGGGATTAAACC-GTAGGTTAAAAAATG-AAAATGA
62 AAAAAGA-CTAGATTAAACCACTA-GTCAGAAAATGAAAAATGA
* * * * * ** * *
3263365 CCAAGACTAAA-TCATGAGTCAAAAAAT-ATAAATGATTTA-TATTAAATCACAAGCCAAAGAAA
1 -CAGGATTAAACT-ATGAGTCAAAAAATGA-AAACGA--TAGGATTAAACCATGAGTCAGA-AAA
* * * *
3263427 T-AAAAATGATCAAAATTAAATCACGAGTCAGAAAATG-AAAATGA
60 TGAAAAA-GA-CTAGATTAAACCACTAGTCAGAAAATGAAAAATGA
* * ** ** * **
3263471 TC-GAGATTAAACCACGAGTCAGAAAACAAAAATGATAATGAAAATTATCAAAATAAAATTATGA
1 -CAG-GATTAAACTATGAGT-------C--AAA--A-AATGAAAACGAT-AGGATTAAACCATGA
* * * * * * * * *
3263535 ATTAGAAAATGAAAAGGATCCAGATTAAAACACGAGTTAAAAAATG-AAAACGA
51 GTCAGAAAATGAAAAAGA-CTAGATTAAACCACTAGTCAGAAAATGAAAAATGA
* * * * * * *
3263588 CCAGAATTAAAGC-ACGAGTCAAAAAATGAAAATGATAGGGACTAAACCCTGAGTGAAAAAATGA
1 -CAGGATTAAA-CTATGAGTCAAAAAATGAAAACGATA-GGATTAAACCATGAGTCAGAAAATGA
** * * * * **
3263652 AAACCACCAGGATTAAACCACGAGTTAGAAAAT-TAAAGCGA
63 AAAAGACTA-GATTAAACCACTAGTCAGAAAATGAAAAATGA
* * * * * * * *
3263693 TCAAGATGAAA-TGATAAGTCAGAAAATGAAAAATGATCGGGATTATACCATGAGTCAAAAAATG
1 -CAGGATTAAACT-ATGAGTCAAAAAATG-AAAACGAT-AGGATTAAACCATGAGTCAGAAAATG
* * * *
3263757 AAAATGACTGGGATTAAATCA-TGAGTCAAAAAAT-AAAAATGA
62 AAAAAGACT-AGATTAAACCACT-AGTCAGAAAATGAAAAATGA
* * * * * **
3263799 CAGGGA-TAAA-TAATGCA-TCAGAAAATGAAAATGACAAGGATTAAAGCACGAGTTGGAAAATG
1 CA-GGATTAAACT-ATG-AGTCAAAAAATGAAAACGA-TAGGATTAAACCATGAGTCAGAAAATG
* *
3263861 TAAAACA-ACAAAGATTAAACCACAAGTCA-AAAAGTG--AAATGA
62 -AAAA-AGAC-TAGATTAAACCACTAGTCAGAAAA-TGAAAAATGA
* * * * * ** * ** ** *
3263903 CCGAGATTAAACCATGAGTTAGAAAATGAAAACAACCGAAATTAAATGACAAGTCAAAAAATGAA
1 CAG-GATTAAACTATGAGTCAAAAAATGAAAACGATAG-GATTAAACCATGAGTCAGAAAATGAA
* * * * *
3263968 AATGACTGGTATTAAATCACGAGTCAAAGAAAT-AAAAATGA
64 AAAGACTAG-ATTAAACCACTAGTCAGA-AAATGAAAAATGA
* * * * * ** * *
3264009 TAGGAATCAAA-TCACGAGTTAGAAAATGAAAATAACCAGGATTAAACCACT-AGTCAGGAAATG
1 CAGG-ATTAAACT-ATGAGTCAAAAAATGAAAACGA-TAGGATTAAACCA-TGAGTCAGAAAATG
* * * * *
3264072 AAAATGATCTAAATTAAATCACGAGTCAAAAAAT-AAAAATGA
62 AAAAAGA-CTAGATTAAACCACTAGTCAGAAAATGAAAAATGA
** * * * * * * * *
3264114 CCAAAAATAAA-TCACGAG-CTTAAAACTAAAAACGATCAGGATTAAATCATGAGTCAAAAAATT
1 -CAGGATTAAACT-ATGAGTC-AAAAAATGAAAACGAT-AGGATTAAACCATGAGTCAGAAAATG
* *
3264177 AAAAGGA-TAGGGATTAAACCA-TGAGTCAGAGAATG-AAAATGA
62 AAAAAGACTA--GATTAAACCACT-AGTCAGAAAATGAAAAATGA
** * * * * *
3264219 TGGAGATGAAACCACT-AGTCAAAAAATGAAAAACAATTGAGATTAAATCATGAGTCAGAAAATG
1 CAG-GATTAAACTA-TGAGTCAAAAAATG-AAAACGATAG-GATTAAACCATGAGTCAGAAAATG
* ** *
3264283 AAGACA-ACGGGGATTAAACCACGAGTCAGAGAAAT-AAAAATGA
62 AA-AAAGAC-TAGATTAAACCACTAGTCAGA-AAATGAAAAATGA
** * * *
3264326 CCAAAATTAAA-TCATGAGTTAAAAAATGAAAATGATGGGAATTAAACCATGAGTCAGAAAATGA
1 -CAGGATTAAACT-ATGAGTCAAAAAATGAAAACGATAGG-ATTAAACCATGAGTCAGAAAATGA
* * *
3264390 AAATGA-TAGGGATTAAATCA-TGAGTCAAAAAAT-AAAAACT-A
63 AAAAGACTA--GATTAAACCACT-AGTCAGAAAATGAAAAA-TGA
* * ** * * * * *
3264431 TCAAGATTAAACCACAAGTCAAAAAATAAAAATGACCCA-TATTAAATCATGAGTCAGAAAATGA
1 -CAGGATTAAACTATGAGTCAAAAAATGAAAACGA--TAGGATTAAACCATGAGTCAGAAAATGA
* * *
3264495 AAATGA-TCAGAATTAAACCA-TGGGTTAGAAAATGAAAA
63 AAAAGACT-AG-ATTAAACCACT-AGTCAGAAAATGAAAA
3264533 CAATCGAGAT
Statistics
Matches: 1891, Mismatches: 436, Indels: 418
0.69 0.16 0.15
Matches are distributed among these distances:
92 4 0.00
93 48 0.03
94 16 0.01
95 1 0.00
97 3 0.00
98 2 0.00
100 1 0.00
101 3 0.00
102 2 0.00
103 19 0.01
104 164 0.09
105 735 0.39
106 594 0.31
107 135 0.07
108 6 0.00
109 2 0.00
110 4 0.00
111 1 0.00
113 4 0.00
114 1 0.00
115 4 0.00
116 1 0.00
117 102 0.05
118 38 0.02
119 1 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (103 bp):
CAGGATTAAACTATGAGTCAAAAAATGAAAACGATAGGATTAAACCATGAGTCAGAAAATGAAAA
AGACTAGATTAAACCACTAGTCAGAAAATGAAAAATGA
Found at i:3262363 original size:35 final size:35
Alignment explanation
Indices: 3260333--3262372 Score: 384
Period size: 35 Copynumber: 58.6 Consensus size: 35
3260323 AGTGATTGGA
* * * * ***
3260333 ATTAAAGCATAAGTTAGAAAATGACAATGATTGGG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* * * * ** *
3260368 ACTAAACCCTGAGTGAGAAAACGAAAACCACCAAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
** **
3260403 ATTAAACCATGAGTCAGAAAATGAAAGCGATCGGG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
** * * *
3260438 ATTAAATGATGACTCAAAAAATGAAAAATGA-CAGGG
1 ATTAAACCATGAGTCAGAAAATG-AAAATGATCA-AG
* * * * * *
3260474 TTTATACCATGAGTCAAAAAATAAAAATGACCGAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* * *
3260509 ATTAAAACATGAGTCAAAAAATAAAAATGA-CAAGG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAA-G
* * *
3260544 ATTAAACAATGTGTCAGAAAATGAAAATGA-CAGGG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCA-AG
* * **
3260579 ATTAAAGCATGAGTTAGAAAATGTAAAACAAT-AAGG
1 ATTAAACCATGAGTCAGAAAATG-AAAATGATCAA-G
* * * *
3260615 ATTAAACCATAAGTCA-AAAAGTGACAATGACCGAG
1 ATTAAACCATGAGTCAGAAAA-TGAAAATGATCAAG
** * * * * *
3260650 ATTAAACTTTAAGTCAAAAAATGAAAACGACCAGG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* * * * *
3260685 ATTCAACGATGAGTCAAAAAATGAAAATGACCAGG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* *
3260720 ATTAAACCACT-AGTCA-AGAAATGAAAATGACCAAA
1 ATTAAACCA-TGAGTCAGA-AAATGAAAATGATCAAG
* ** * *
3260755 ATTAAATCACAAGTCAGAAAAATAAAAATGACCGAA-
1 ATTAAACCATGAGTCAG-AAAATGAAAATGATC-AAG
* ** * **
3260791 ATTAAATCACAAGTCTA-AAATTGAAAACAATCAAG
1 ATTAAACCATGAGTC-AGAAAATGAAAATGATCAAG
* *
3260826 ATTAAACCATGAGTCAAAAAATGAAAATGA-CAGG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* ** * ** *
3260860 TATTGAATTATGAGTTAGAGGATGAAAATGA-CTGAG
1 -ATTAAACCATGAGTCAGAAAATGAAAATGATC-AAG
* ** * ** ***
3260896 ATGAAACCACCAGTCAAAAAATGAAAAACAATTGGG
1 ATTAAACCATGAGTCAGAAAATG-AAAATGATCAAG
* * * * * * *
3260932 ATTAAACCGTGAGTTAGACAATGAAGA-CAACAGGG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCA-AG
* * * * * *
3260967 ATTGAACCATGACTCAAAGAAATAAAAAT-AACTAG
1 ATTAAACCATGAGTCAGA-AAATGAAAATGATCAAG
* * * **
3261002 AATTAAATCATGAGTCAAAAAATG-AAATCAAT-GGG
1 -ATTAAACCATGAGTCAGAAAATGAAAAT-GATCAAG
* * * * *
3261037 AATTAAACCACGAGCCAGAAAATAAAAACGATCGAG
1 -ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* * * *
3261073 ATTAAATCATGAGTCAAAAAATAAAAAAGA-CTAAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATC-AAG
* * *
3261108 ATTAAAAGC-TCGAGTCAAAAAATGAAAATGATCAGG
1 ATT-AAACCAT-GAGTCAGAAAATGAAAATGATCAAG
* * * * * *
3261144 ATTAAACCAT-AGGTTAAAAAATGAAATTAACCGAG
1 ATTAAACCATGA-GTCAGAAAATGAAAATGATCAAG
* * *
3261179 ATTAAATCACGAGTCAGAAAATGAAAATGATC-GG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* ** * *
3261213 TATTAAATCACAAG-CTAGAGAAATAAAAATGATCAAA
1 -ATTAAACCATGAGTC-AGA-AAATGAAAATGATCAAG
* * * ** *
3261250 ATTAAATCACGAGTCAAAAAATGAAAACCATCGAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* *
3261285 ATTAAAACCACGAGTTAGAAAATGAAAATGAT--A-
1 ATT-AAACCATGAGTCAGAAAATGAAAATGATCAAG
* * * *
3261318 ATGAAA--ATTA-TC--AAAATTAAATTACT-AGTCAGAAA
1 ATTAAACCATGAGTCAGAAAATGAAA--A-TGA-TC--AAG
* * * *
3261353 ATGAAA--ATGA--C-CAAAATTAAAGT-A-CAAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* **
3261381 -TTAGAA--A--A-T--GAAAATG--ACTG--GGA-
1 ATTA-AACCATGAGTCAGAAAATGAAAATGATCAAG
* * ** * * * *
3261404 CTAACCCCTTAATG--AGAAAATGAAAACCG-CCAAG
1 ATTAAACCATGA-GTCAGAAAATGAAAA-TGATCAAG
* * ***
3261438 ATTAAACCACGAGTCAAAAAAT-AAAAGTGATTGGG
1 ATTAAACCATGAGTCAGAAAATGAAAA-TGATCAAG
* * * * *
3261473 ATTAAACGATGAGTCAAAAAATGAAAAAAGACCAGG
1 ATTAAACCATGAGTCAGAAAATG-AAAATGATCAAG
* ** * ** *
3261509 ATTATACCACAAGTCAAAAAATGAAAACAATCGAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* * *
3261544 ATTAAATCACGAGTCAAAAAAT-AAAA--ATCAAAGGG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATC-AA--G
* * * * *
3261579 ATCAAACAACGCGTCAAAAAATGAAAATGA-CAGAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCA-AG
* ** * ** ***
3261614 ATTAAAGCAAAAGTCAAAAAATGTAAAACAATGGGG
1 ATTAAACCATGAGTCAGAAAATG-AAAATGATCAAG
* ** * *
3261650 ATTAATCCACAAGTTA-AAAAGTGAAAATAAT-AGAG
1 ATTAAACCATGAGTCAGAAAA-TGAAAATGATCA-AG
** * * *
3261685 ATTAAACCACAAGTCA-AAAATAAAAACGATC-GG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* * * * *
3261718 TATTAAATCATGAGTCAAAGAAATAAAAATAATCAAA
1 -ATTAAACCATGAGTCAGA-AAATGAAAATGATCAAG
* * * * *
3261755 ATCAAATCATGGGTCAAAAAATGAAAGTGA-CTAAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATC-AAG
* **
3261790 ATTAAACAACT-AGTCA-AGAAATGAAACCGATC-AG
1 ATTAAACCA-TGAGTCAGA-AAATGAAAATGATCAAG
* * * * *
3261824 AATTAAATCACT-AGTCAAAAAATAAAAATAATTTAA-
1 -ATTAAACCA-TGAGTCAGAAAATGAAAATGA-TCAAG
* * * * ** * *
3261860 ATTAAATCATGAGTTTA-AAACTAAAAACAAGCAGG
1 ATTAAACCATGAG-TCAGAAAATGAAAATGATCAAG
* * *
3261895 ATTAAACCATGAGTCAAAAAATTAAAACGAT-ACAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCA-AG
* *
3261930 ATTAAACCATGAGTTAGAAAATGAAAATGA-CTTAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATC-AAG
* * *
3261965 ATGAAACCACT-AGTCAGAAAATGAAAAATGACCAGG
1 ATTAAACCA-TGAGTCAGAAAATG-AAAATGATCAAG
* * * ** * *
3262001 ATTAAACTATGAGTCAAAAAATGAAGACAATGAGG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* * *
3262036 ATTAAACCATGAGTCAGAGAAATAAAAAAGA-CTAG
1 ATTAAACCATGAGTCAGA-AAATGAAAATGATCAAG
* * * **
3262071 AATTAAATCACGAGTGAGAAAATGAAAATGAT-GGG
1 -ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* * ***
3262106 AATTAAACTATTAGTCAGAAAATGAAAATGATTGGG
1 -ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* * * * * *
3262142 ACTAAATCATGAGTCAAAAAATGAAAACGACCGAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* *
3262177 ATTAAACCATGGGTCAGAAAATGAAAACGATCAAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* * * *
3262212 A-TAAACCATG-GGCTAGAAAATGAAAA-CAACTTAG
1 ATTAAACCATGAGTC-AGAAAATGAAAATGATC-AAG
* * * * * *
3262246 ATTAAATCACGAGTTAAAAAATGGAAACGATC-AG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
* ** * * * *
3262280 TATTAAATCACAAGCCAGAGAATTAAAAATGATTGAA-
1 -ATTAAACCATGAGTCAGA-AAATGAAAATGA-TCAAG
* *
3262317 ATTAAATCATGAGTTAGAAAATGAAAATGATCAAG
1 ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
*
3262352 ATTAGACCATGAGTCAGAAAA
1 ATTAAACCATGAGTCAGAAAA
3262373 CAAAAACGAT
Statistics
Matches: 1481, Mismatches: 399, Indels: 250
0.70 0.19 0.12
Matches are distributed among these distances:
24 5 0.00
26 6 0.00
27 11 0.01
28 5 0.00
29 10 0.01
30 5 0.00
31 1 0.00
32 9 0.01
33 10 0.01
34 93 0.06
35 935 0.63
36 374 0.25
37 15 0.01
38 2 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.20
Consensus pattern (35 bp):
ATTAAACCATGAGTCAGAAAATGAAAATGATCAAG
Found at i:3262560 original size:35 final size:35
Alignment explanation
Indices: 3262399--3262635 Score: 142
Period size: 35 Copynumber: 6.8 Consensus size: 35
3262389 AATTATCAAA
* * *
3262399 ATTAAATTATGAGTCAGAAAATGAAAATG-TTCAGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGACT-AGG
* * * * * * **
3262434 ATCAAAACGTGAGTTAAAAAATGAAAATCACCAAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGACTAGG
* * * * * *
3262469 ATTAAAGCACGAGTTAGAAAATGATAACGACTAGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGACTAGG
* * * * *
3262504 A-CAGAACTC-TGAGTGAGAAAAT-AAAATCCACCAGG
1 ATTA-AA-TCATGAGTCAAAAAATGAAAAT-GACTAGG
* *
3262539 ATTAAACCATGAGTCAAAAAATGAAAGTGA-TAGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGACTA-GG
* *
3262574 ATTAAATAATGAGTCAAAAAATGAAAATGACTGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGACTAGG
* *
3262609 ATTAAATCACGAGTCAAAAAATAAAAA
1 ATTAAATCATGAGTCAAAAAATGAAAA
3262636 GATAATGCAT
Statistics
Matches: 149, Mismatches: 44, Indels: 18
0.71 0.21 0.09
Matches are distributed among these distances:
34 6 0.04
35 136 0.91
36 7 0.05
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (35 bp):
ATTAAATCATGAGTCAAAAAATGAAAATGACTAGG
Found at i:3262630 original size:105 final size:105
Alignment explanation
Indices: 3262533--3264500 Score: 995
Period size: 105 Copynumber: 18.7 Consensus size: 105
3262523 AATAAAATCC
* * * * **
3262533 ACCAGGATTAAACCATGAGTCAAAAAATGAAAGTGATAGGGATTAAATAATGAGTCAAAAAATGA
1 ACCAAGATTAAATCACGAGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAAAATGA
3262598 AAATGACTGGGATTAAATCACGAGTCAAAAAAT---AA--
66 AAATGACTGGGATTAAATCACGAGTCAAAAAATAAAAATG
* ** * * *
3262633 A--AAGA-T-AAT-GC-A-TTGAAAAATGAAAACGATAGGGATTAAAGCACGAGTCAAAAAATGT
1 ACCAAGATTAAATCACGAGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAAAATG-
* * * * * *
3262691 AAAACGTCGGGGCTTAAA-C-CTAAGTCAAAACAA-GAAAATG
65 AAAATGACTGGGATTAAATCAC-GAGTCAAAA-AATAAAAATG
* * * **
3262731 ACCAAGATTAAATCATGAGTCAAAAAATGAAAATGATTGGAATTAAACCACAAGTC-AAAAATGA
1 ACCAAGATTAAATCACGAGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAAAATGA
* * * * *
3262795 CAATGACCGGCATTAAATGACGAGTCAAAGGAATAAAAATG
66 AAATGACTGGGATTAAATCACGAGTCAAA-AAATAAAAATG
* * * * *
3262836 ACTTAA-ATCAAATAACGAGTCTAGAAAATAAAAATGATCA-GGATTAAACCACT-AGT-AAAGA
1 AC-CAAGATTAAATCACGAGTC-AAAAAATGAAAATGAT-AGGGATTAAACCA-TGAGTCAAA-A
* * * * *
3262897 AATGAAAATGA-TCAGAATTAAATCATGAGTTAGAAAATAAAAATG
61 AATGAAAATGACT-GGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * * * * * *
3262942 ACCAAAATTAAATTACGAGTCTAAAACTAAAAATGATCGAGATTAAACCACGAGTAAAAAAATTA
1 ACCAAGATTAAATCACGAGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAAAATGA
* * * *
3263007 AAACGA-TAGGGATTAAACCATGAGTCAAAGAATAAAAATG
66 AAATGACT-GGGATTAAATCACGAGTCAAAAAATAAAAATG
* ** * * * *
3263047 ACCAAGATGAAGCCACCAGTCAAAAAATGAAAAACGATCA-GGATTAAACCACGAGTCAGAAAAT
1 ACCAAGATTAAATCACGAGTCAAAAAATG-AAAATGAT-AGGGATTAAACCATGAGTCAAAAAAT
* * * * * * *
3263111 GAAGAT-AATGGGAACTAAACCATGAGTCGGAGAAATAAAAATG
64 GAAAATGACTGGG-ATTAAATCACGAGTC-AAAAAATAAAAATG
* * *
3263154 ACCAAAATTAAATCACAAGTCAGAAAATGAAAAT-AGT-GGGAATTAAACCATGAGTCAAAAAAT
1 ACCAAGATTAAATCACGAGTCAAAAAATGAAAATGA-TAGGG-ATTAAACCATGAGTCAAAAAAT
* * * * *
3263217 AAAAACGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
64 GAAAATGACTGGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * * *
3263259 ACCTAGATTAAATCACGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGGGTTAGAAAATTA
1 ACCAAGATTAAATCACGAGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAAAATGA
* * *
3263324 AAATGACCGGGATTAAA-C-CGTAGGTTAAAAAATGAAAATG
66 AAATGACTGGGATTAAATCACG-A-GTCAAAAAATAAAAATG
* * **** * ** *
3263364 ACCAAGACTAAATCATGAGTCAAAAAAT-ATAAATGATTTATATTAAATCACAAGCCAAAGAAAT
1 ACCAAGATTAAATCACGAGTCAAAAAATGA-AAATGATAGGGATTAAACCATGAGTCAAA-AAAT
* *** * *
3263428 AAAAATGA-TCAAAATTAAATCACGAGTCAGAAAATGAAAATG
64 GAAAATGACT-GGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * *** * **
3263470 ATCGAGATTAAACCACGAGTCAGAAAACAAAAATGATAATGAAAATTATCAAAATAAAATTATGA
1 ACCAAGATTAAATCACGAGTC-----A-AAAAATGAAAATG---A-TA--GGGATTAAACCATGA
* * * * ** * * * *
3263535 ATTAGAAAATGAAAAGGA-TCCAGATTAAAACACGAGTTAAAAAATGAAAACG
54 GTCAAAAAATGAAAATGACT-GGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * *
3263587 ACC-AGAATTAAAGCACGAGTCAAAAAATGAAAATGATAGGGACTAAACCCTGAGTGAAAAAATG
1 ACCAAG-ATTAAATCACGAGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAAAATG
** ** * * * * **
3263651 AAAACCACCAGGATTAAACCACGAGTTAGAAAATTAAAGCG
65 AAAATGACTGGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * ** * * *
3263692 ATCAAGATGAAATGATAAGTCAGAAAATGAAAAATGATCGGGATTATACCATGAGTCAAAAAATG
1 ACCAAGATTAAATCACGAGTCAAAAAATG-AAAATGATAGGGATTAAACCATGAGTCAAAAAATG
*
3263757 AAAATGACTGGGATTAAATCATGAGTCAAAAAATAAAAATG
65 AAAATGACTGGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * * * * ***
3263798 A-CAGGGA-TAAATAATGCA-TCAGAAAATGAAAATGACAAGGATTAAAGCACGAGTTGGAAAAT
1 ACCA-AGATTAAATCACG-AGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAAAAT
** *** * * * *
3263860 GTAAAACAACAAAGATTAAACCACAAGTCAAAAAGT-GAAATG
64 G-AAAATGACTGGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * ** ** ** ** **
3263902 ACCGAGATTAAACCATGAGTTAGAAAATGAAAACAACCGAAATTAAATGACAAGTCAAAAAATGA
1 ACCAAGATTAAATCACGAGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAAAATGA
*
3263967 AAATGACTGGTATTAAATCACGAGTCAAAGAAATAAAAATG
66 AAATGACTGGGATTAAATCACGAGTCAAA-AAATAAAAATG
* * * * * * * **
3264008 A-TAGGAATCAAATCACGAGTTAGAAAATGAAAATAACCA-GGATTAAACCACT-AGTCAGGAAA
1 ACCAAG-ATTAAATCACGAGTCAAAAAATGAAAATGA-TAGGGATTAAACCA-TGAGTCAAAAAA
**
3264070 TGAAAATGATCT-AAATTAAATCACGAGTCAAAAAATAAAAATG
63 TGAAAATGA-CTGGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * * *
3264113 ACCAAAAATAAATCACGAG-CTTAAAACTAAAAACGATCA-GGATTAAATCATGAGTCAAAAAAT
1 ACCAAGATTAAATCACGAGTC-AAAAAATGAAAATGAT-AGGGATTAAACCATGAGTCAAAAAAT
* * * * * * *
3264176 TAAAAGGA-TAGGGATTAAACCATGAGTCAGAGAATGAAAATG
64 GAAAATGACT-GGGATTAAATCACGAGTCAAAAAATAAAAATG
*** * * * ** * * * *
3264218 ATGGAGATGAAACCACTAGTCAAAAAATGAAAAACAATTGAGATTAAATCATGAGTCAGAAAATG
1 ACCAAGATTAAATCACGAGTCAAAAAATG-AAAATGATAGGGATTAAACCATGAGTCAAAAAATG
* ** * * *
3264283 AAGACAACGGGGATTAAACCACGAGTCAGAGAAATAAAAATG
65 AAAATGACTGGGATTAAATCACGAGTCA-AAAAATAAAAATG
* * * *
3264325 ACCAAAATTAAATCATGAGTTAAAAAATGAAAATGAT-GGGAATTAAACCATGAGTCAGAAAATG
1 ACCAAGATTAAATCACGAGTCAAAAAATGAAAATGATAGGG-ATTAAACCATGAGTCAAAAAATG
*
3264389 AAAATGA-TAGGGATTAAATCATGAGTCAAAAAATAAAAACT-
65 AAAATGACT-GGGATTAAATCACGAGTCAAAAAATAAAAA-TG
* * * * ***** * *
3264430 ATCAAGATTAAACCACAAGTCAAAAAATAAAAATGACCCATATTAAATCATGAGTCAGAAAATGA
1 ACCAAGATTAAATCACGAGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAAAATGA
3264495 AAATGA
66 AAATGA
3264501 TCAGAATTAA
Statistics
Matches: 1412, Mismatches: 364, Indels: 179
0.72 0.19 0.09
Matches are distributed among these distances:
92 1 0.00
93 47 0.03
94 17 0.01
96 4 0.00
97 1 0.00
98 4 0.00
100 5 0.00
101 1 0.00
102 3 0.00
103 14 0.01
104 78 0.06
105 597 0.42
106 442 0.31
107 101 0.07
108 3 0.00
111 13 0.01
112 11 0.01
113 1 0.00
115 1 0.00
116 3 0.00
117 54 0.04
118 11 0.01
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (105 bp):
ACCAAGATTAAATCACGAGTCAAAAAATGAAAATGATAGGGATTAAACCATGAGTCAAAAAATGA
AAATGACTGGGATTAAATCACGAGTCAAAAAATAAAAATG
Found at i:3262776 original size:35 final size:35
Alignment explanation
Indices: 3262737--3269265 Score: 685
Period size: 35 Copynumber: 183.7 Consensus size: 35
3262727 AATGACCAAG
3262737 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ** * ** *
3262772 ATTAAACCACAAGTC-AAAAATGACAATGACCGGC
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * *
3262806 ATTAAATGACGAGTCAAAGGAATAAAAATGACTT-AA
1 ATTAAATCATGAGTCAAA-AAATGAAAATGA-TTGGA
* * * * * *
3262842 ATCAAATAACGAGTCTAGAAAATAAAAATGATCAGG-
1 ATTAAATCATGAGTC-AAAAAATGAAAATGAT-TGGA
* **
3262878 ATTAAACCACT-AGT-AAAGAAATGAAAATGATCAGA
1 ATTAAATCA-TGAGTCAAA-AAATGAAAATGATTGGA
* * * ****
3262913 ATTAAATCATGAGTTAGAAAATAAAAATGACCAAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * *
3262948 ATTAAATTACGAGTCTAAAACTAAAAATGA-TCGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * * *
3262982 GATTAAACCACGAGTAAAAAAATTAAAACGATAGGG
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * ***
3263018 ATTAAACCATGAGTCAAAGAATAAAAATGA-CCAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ** ** * *
3263052 GATGAAGCCACCAGTCAAAAAATGAAAAACGATCAGG-
1 -ATTAAATCATGAGTCAAAAAATG-AAAATGAT-TGGA
* * * * * *
3263089 ATTAAACCACGAGTCAGAAAATGAAGATAATGGGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * ****
3263124 ACTAAACCATGAGTCGGAGAAATAAAAATGACCAAA
1 ATTAAATCATGAGTC-AAAAAATGAAAATGATTGGA
** * *
3263160 ATTAAATCACAAGTCAGAAAATGAAAAT-AGTGGGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* * * * *
3263195 ATTAAACCATGAGTCAAAAAATAAAAACGACTGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * *
3263230 ATTAAACCATGAGTCAGAAAATAAAAATGACCTAG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* * * *
3263265 ATTAAATCACGAGTCAGAAAATGAAAATGATCGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * ** *
3263300 ATTAAACCATGGGTTAGAAAATTAAAATGACCGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * ***
3263335 ATTAAACCGT-AGGTTAAAAAATGAAAATGA-CCAA
1 ATTAAATCATGA-GTCAAAAAATGAAAATGATTGGA
* *
3263369 GACTAAATCATGAGTCAAAAAAT-ATAAATGATT-TA
1 -ATTAAATCATGAGTCAAAAAATGA-AAATGATTGGA
** * * ***
3263404 TATTAAATCACAAGCCAAAGAAATAAAAATGATCAAA
1 -ATTAAATCATGAGTCAAA-AAATGAAAATGATTGGA
* * *
3263441 ATTAAATCACGAGTCAGAAAATGAAAATGA-TCGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * ** *
3263475 GATTAAACCACGAGTCAGAAAACAAAAATGATAATGAAA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGAT--TG-GA
* * * **
3263514 ATT--ATCA-AAATAAAATTATGAATTAGAAAATGAAAAGG-
1 ATTAAATCATGAGTCAAA--A--AA-T-GAAAATG-ATTGGA
* * * ** ** * ***
3263552 ATCCAGATTAAAACACGAGTTAAAAAATGAAAACGACCAGA
1 AT-TAAATCATGAGTC-A---AAAA-ATGAAAATGATTGGA
* * * *
3263593 ATTAAAGCACGAGTCAAAAAATGAAAATGATAGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * ** **
3263628 ACTAAACCCTGAGTGAAAAAATGAAAACCACCAGG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* * * * * ** **
3263663 ATTAAACCACGAGTTAGAAAATTAAAGCGA-TCAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * *
3263697 GATGAAATGATAAGTCAGAAAATGAAAAATGATCGGG
1 -ATTAAATCATGAGTCAAAAAATG-AAAATGATTGGA
* * * *
3263734 ATTATACCATGAGTCAAAAAATGAAAATGACTGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ** *
3263769 ATTAAATCATGAGTCAAAAAATAAAAATGACAGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * **
3263804 A-TAAATAATGCA-TCAGAAAATGAAAATGACAAGG-
1 ATTAAATCATG-AGTCAAAAAATGAAAATGA-TTGGA
* * *** * ****
3263838 ATTAAAGCACGAGTTGGAAAATGTAAAA-CAACAAA
1 ATTAAATCATGAGTCAAAAAATG-AAAATGATTGGA
* ** * **
3263873 GATTAAACCACAAGTCAAAAAGTG-AAATGA-CCGA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * ** ** *
3263907 GATTAAACCATGAGTTAGAAAATGAAAACAACCGAA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ** * *
3263943 ATTAAATGACAAGTCAAAAAATGAAAATGACTGGT
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * *
3263978 ATTAAATCACGAGTCAAAGAAATAAAAATGATAGGA
1 ATTAAATCATGAGTCAAA-AAATGAAAATGATTGGA
* * * * * **
3264014 ATCAAATCACGAGTTAGAAAATGAAAATAACCAGG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* ** *
3264049 ATTAAACCACT-AGTCAGGAAATGAAAATGATCT-AA
1 ATTAAATCA-TGAGTCAAAAAATGAAAATGAT-TGGA
* * ****
3264084 ATTAAATCACGAGTCAAAAAATAAAAATGACCAAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * * *
3264119 AATAAATCACGAG-CTTAAAACTAAAAACGATCAGG-
1 ATTAAATCATGAGTC-AAAAAATGAAAATGAT-TGGA
* * * *
3264154 ATTAAATCATGAGTCAAAAAATTAAAAGGATAGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * *
3264189 ATTAAACCATGAGTCAGAGAATGAAAATGA-TGGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * **
3264223 GATGAAACCACT-AGTCAAAAAATGAAAAACAATT-GA
1 -ATTAAATCA-TGAGTCAAAAAATG-AAAATGATTGGA
* * ** ** *
3264259 GATTAAATCATGAGTCAGAAAATGAAGACAACGGGG
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * ****
3264295 ATTAAACCACGAGTCAGAGAAATAAAAATGACCAAA
1 ATTAAATCATGAGTCA-AAAAATGAAAATGATTGGA
* *
3264331 ATTAAATCATGAGTTAAAAAATGAAAATGATGGGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * *
3264366 ATTAAACCATGAGTCAGAAAATGAAAATGATAGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* **
3264401 ATTAAATCATGAGTCAAAAAATAAAAACT-A-TCAA
1 ATTAAATCATGAGTCAAAAAATGAAAA-TGATTGGA
* ** * ***
3264435 GATTAAACCACAAGTCAAAAAATAAAAATGA-CCCA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* **
3264470 TATTAAATCATGAGTCAGAAAATGAAAATGATCAGA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * * *
3264506 ATTAAACCATGGGTTAGAAAATGAAAA-CAATCGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * *
3264540 GATTAAACCATG-GTTTAGAAAATAAAAATGACT-GA
1 -ATTAAATCATGAG-TCAAAAAATGAAAATGATTGGA
* * * ** *
3264575 GATTAAATTATGAGTTAGAAAATGAAAATGATCAGT
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
** * * * *
3264611 ATTAAATCACAAG-CTAGAGAAATAAAAATGATCGAA
1 ATTAAATCATGAGTC-A-AAAAATGAAAATGATTGGA
* *
3264647 ATTAAGTCATGAGTCAAAAAATGAAAATAATT-GA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * **
3264681 GATTAAACCATGAGTAAGAAAACAAAAATGATAATGAAAATTATCAAA
1 -ATTAAATCATGAGT-----CA-AAAAATGAAAATG---A-T-T-GGA
* ***
3264729 ATTAAATTATGAGTCAAAAAATGAAAATGATCATA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * *** * *
3264764 ATTAAAGCACGAGTCAGAAAACCAAAAATGACT-AA
1 ATTAAATCATGAGTCA-AAAAATGAAAATGATTGGA
* * * * * ***
3264799 GACTAAAGCCT-AGGTGAGAAAATGAAAACT-A-CCAA
1 -ATTAAATCATGA-GTCAAAAAATGAAAA-TGATTGGA
* * * **
3264834 GATTAAACCATGAGTCAGAAAAT-AAAAGCGA-TCAA
1 -ATTAAATCATGAGTCAAAAAATGAAAA-TGATTGGA
* ** * **
3264869 GATTAAATGACAAGTCAAACAATGAAAAATGACCAGG-
1 -ATTAAATCATGAGTCAAAAAATG-AAAATGA-TTGGA
* * ** *
3264906 ATTATACCATGAGTCAAAAAATGAAAATGACCGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
** *
3264941 ATTAAATCATGAGTCAAAAAA-GAAAAATGACGGGG
1 ATTAAATCATGAGTCAAAAAATG-AAAATGATTGGA
* * * *
3264976 ATTAAAGCATGAGTCAAAAAAGTTAAACAAGA-AGG-
1 ATTAAATCATGAGTCAAAAAA-TGAAA-ATGATTGGA
* ** * * *
3265011 ATTAAACCACAAGTTAAAAAGTGAAAATGATT-AA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * *
3265045 GATCAAACCATGAGTCAGAGAATGAAAATGATTGAA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * *
3265081 ATTAAATGAAGAGTCAAAAATTGAAAATGACTT--A
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
** **
3265115 CATTAAATCACAAGTCAAAGAAAT-AAAAGTGATCAGA
1 -ATTAAATCATGAGTCAAA-AAATGAAAA-TGATTGGA
* * * *
3265152 ATCAAATCATAAGTCAGAAAATGAAAATGACT-GA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * *
3265186 GATTAAACCACT-ACTCAAGAAATGAAAATGATCGAA
1 -ATTAAATCA-TGAGTCAAAAAATGAAAATGATTGGA
* * * *
3265222 ATTAAATCATAAGTCAGAAAATAAAAATGATTGAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
** * * ****
3265257 ATTAAATCACAAGTTAAAAAAATAAAAATGACCAAA
1 ATTAAATCATGAG-TCAAAAAATGAAAATGATTGGA
** * * * ***
3265293 ATTAAATCACAAGTCTAAAACTGAAAACGA-CAAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * * ** * *
3265327 GATTAAACCACGTGTTAGAAAATTAAAACAATAGGG
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * *
3265363 TTTAAACCATGAGTCAAAGAATGAAAACGAAT-AA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * ** * * * * *
3265397 GATAAAACCACCAGTCAGAGAATGAAAAACGATCGGG
1 -ATTAAATCATGAGTCAAAAAATG-AAAATGATTGGA
* * **
3265434 ATTAAACCACGAGTCAAAAAATGAAGACAACA-TGG-
1 ATTAAATCATGAGTCAAAAAATGAA-A-ATGATTGGA
* * ***
3265469 ATTAAAGT-ATGAGTCAGAGAAATAAAAATGACCAGA
1 ATTAAA-TCATGAGTCA-AAAAATGAAAATGATTGGA
** * * ** *
3265505 ATTAAATCACAAGTCAGAAAATAAAAACAATGGGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * ** * *
3265540 ATTAAACCACGAGTCAAAAAATGAAAAAAACT-AA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * *
3265574 GATTAAATCATGAGTCAGAAAATGAAAATGATCGGT
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
** * * ***
3265610 ATTAAATCACAAGTCAGAGAAATAAAAATGATCAAA
1 ATTAAATCATGAGTCA-AAAAATGAAAATGATTGGA
** * * * *
3265646 ATTAAATCACAAGTTAGAAAATGAAAATGATCGAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
3265681 ATTAAA-CTATGAGTCAAAAAATGGAAATGATAATGACAATTACTGGA
1 ATTAAATC-ATGAGTCAAAAAAT-G--A--A-AATG---A-T--TGGA
* * *
3265728 ATTAAATTACGAGTCAAAAAATG-AAATGA-TCGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * **
3265761 GATTAAA--ATGCGAGT-TAAAAATGAAAACGACTAAA
1 -ATTAAATCAT--GAGTCAAAAAATGAAAATGATTGGA
* * * * *
3265796 ATTAAAGCACGAGTCAGAAAATG-ACATGACTTTGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* * * * * ** ***
3265831 GATTAAATCCTTAAATGAGAAAATGAAAACCACCAAGA
1 -ATTAAAT-CATGAGTCAAAAAATGAAAATGA-TTGGA
* * * *
3265869 CTTAAAACATGAGTTCAAAAAAATGAAAAGTGAACTCGA
1 ATTAAATCATGAG-TC-AAAAAATGAAAA-TG-ATTGGA
* * * *
3265908 GCTTAAATGATGAGGCTCAGAAAATGAAAATGATTGGG
1 -ATTAAATCATGA-G-TCAAAAAATGAAAATGATTGGA
* * ** *
3265946 ATTATA-CGA-CAGTCAAAAAATGAAAAACAACT-GA
1 ATTAAATC-ATGAGTCAAAAAATG-AAAATGATTGGA
** * * *
3265980 GATT-AATCACAACCTAAAAAAAATGAACAA--A--AG-
1 -ATTAAATCATGA-GT-CAAAAAATGAA-AATGATTGGA
* **
3266013 ATTAAA-CAAT-CGTCCAAAAAAATGAAAATGACAGGGA
1 ATTAAATC-ATGAGT-C-AAAAAATGAAAATGA-TTGGA
* * * ** *
3266050 CTAAAAGCCACT-ACCGTCAAAAAAATGTAAAAACAATAAAGG-
1 ATTAAA-TCA-TGA--GTC-AAAAAATG--AAAATGAT--TGGA
* * * *
3266092 ATTAAA-CTATAAGTAAAAAAATGACAAGTGGA-TAGA
1 ATTAAATC-ATGAGTCAAAAAATGA-AAAT-GATTGGA
* * * * * *
3266128 GATTAAAACCACGAGTCAAAAAATTAAAACAGACTAGA
1 -ATT-AAATCATGAGTCAAAAAATGAAAA-TGATTGGA
* * * * ** *
3266166 ATT-AATGATGGATTCAAAAAAAGAAAATAACCGGC
1 ATTAAATCAT-GAGTCAAAAAATGAAAATGATTGGA
* * ****
3266201 ATTAAATCACGAGTCAAAAGAAATAAAAATGACCAAA
1 ATTAAATCATGAGTC-AAA-AAATGAAAATGATTGGA
* * ***
3266238 ATCAAATCACGAAGTCAAAAAAATGAAAATGA-CCAA
1 ATTAAATCATG-AGTC-AAAAAATGAAAATGATTGGA
* * * * ** **
3266274 GACTAAACCACT-AGT-AAGAAATAAACCAACCA--AAA
1 -ATTAAATCA-TGAGTCAAAAAATGAA--AATGATTGGA
* *
3266309 ATTAAATCAT--GTCAAAAAAT-AAAATGACTGAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * *
3266341 ATTAAATCATGAGTCTAAAACTAAAAATGACTAGG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* * * *
3266376 ATTAAA-CTATTAGTCAAAAAATGAAAACGATAGGG
1 ATTAAATC-ATGAGTCAAAAAATGAAAATGATTGGA
* ** * * *
3266411 ATTAAACCACAAGTTAAAAAATGAAAATGACT-AA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* *
3266445 GATGAAA-CTACT-AGTCAAAAAATGAAAAATGATCAGG-
1 -ATTAAATC-A-TGAGTCAAAAAATG-AAAATGAT-TGGA
* * ** * *
3266482 GTTAAACCACAAGTCAAAATATGAAGACAACGA--GG-
1 ATTAAATCATGAGTCAAAAAATG-A-A-AATGATTGGA
* ** * * ***
3266517 ATTAAACCACAAGTCAGAGAAATAAAAATGACCAGA
1 ATTAAATCATGAGTCA-AAAAATGAAAATGATTGGA
* * * **
3266553 ATTAAATTACGAATCAAAAAATGAAAATGACCAGG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* * * ** *
3266588 ATCAAAACATGAGTTAAAAAATGAAAACCACTAGG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* ***
3266623 ATTAAACCATGAGTCAAAAAATGAAAGCAATTAGG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGATT-GGA
* * *
3266658 ATTAAA-CAATGAGTCCAAAAATGAAAAATGATAGGG
1 ATTAAATC-ATGAGTCAAAAAATG-AAAATGATTGGA
* * * *
3266694 ATTATACCATGAGTCAAAAAAAGAAAATGA-TCGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * *
3266728 GATTAAAACAGGAGTTAAAAAATAAAAAT-ATAGGG
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
** * * *
3266763 ATTAAA-CAACACATCAAAAAATGAAAATGATAGGG
1 ATTAAATCATGA-GTCAAAAAATGAAAATGATTGGA
* ** * ** * *
3266798 ATTAAAGCACAAGCCAAAAAATGTAAAACAATGGGG
1 ATTAAATCATGAGTCAAAAAATG-AAAATGATTGGA
* * **
3266834 ATTAAA-CA-GCAAGTCAAAAATTGGAAATGA-CCGA
1 ATTAAATCATG--AGTCAAAAAATGAAAATGATTGGA
* * ***
3266868 GATTAAACCATGAGTCAAAAAATGAAAAAGATCATA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
** * * *
3266904 ATTAAAAGATGAGTCAAAAAATAAAAATAACT-GA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * *
3266938 CATTAAATCATGAGTCAATGAAATAAAAATGATTGAA
1 -ATTAAATCATGAGTCAA-AAAATGAAAATGATTGGA
* * * * * *
3266975 ATCAAATCACGAGTC--AGAATCAAAATGATCGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ** **
3267008 ATTAAA-CGACT-AGTCAAGAAACAAAAATGATCAGA
1 ATTAAATC-A-TGAGTCAAAAAATGAAAATGATTGGA
* ** * * *
3267043 ATTAAATTACAAGTCAAAAAATAAAAATGATCGAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ** * * *
3267078 ATTAAATCATAAGTTTAAAACTAAAAATGA-TCGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ** * **
3267112 GATTAAACCACAAGTCAAAAAATCAAAATGACAAGG-
1 -ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* * * ** *
3267148 ATTAAACCATGAGTCAGAGAACAAAAATGACT-GA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ** ** * * *
3267182 GATGAAGCCACCAATCAAAAAATGAAAAATGATCGGG
1 -ATTAAATCATGAGTCAAAAAATG-AAAATGATTGGA
* * * ** ** *
3267219 ATTAAAGCATGAGTCAGAAAATGAAGACAACAGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * ***
3267254 ACTAAACCATGACTCAGAGAAATAAAAATGACCAGA
1 ATTAAATCATGAGTCA-AAAAATGAAAATGATTGGA
* * *
3267290 ATTAAATCATGAGTCAGAAAATGAAAACGATGGGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ***
3267325 ATTAAACTACA--AGTCAGAAAATGAAAATGA-CCAA
1 ATTAAA-T-CATGAGTCAAAAAATGAAAATGATTGGA
* *
3267359 GATTAAATCACGAGTCAAAAAATAAAAATGATT-GA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * *
3267394 GATTAAA-CCTCGAGTCAGAAAATAAAAATGACTTGG-
1 -ATTAAATCAT-GAGTCAAAAAATGAAAATGA-TTGGA
* * * *
3267430 ATTAAATCACGAGTTAGAAAATGAAAATGAATGG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * **
3267464 ATTAAACCATGGGTTAAAAAATAAAAACGA-TCAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* *
3267498 GATTAAATCATGAGTCAAAAAATGAAAATGATCGGT
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ** * * * ***
3267534 ATGAAATCACAAGCCAGAGAAATAAAAATGATCAAA
1 ATTAAATCATGAGTCA-AAAAATGAAAATGATTGGA
* * ** *
3267570 ATTAAATCATAAATCAAAAAATGAAAACCA-TCGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * *
3267604 GATTAAACCACGAGTTAGAAAATGAAAATGATAATGAAAATTACCAGA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGAT--TG----------GA
* ** * * *
3267652 ATTAAATTACAAATCAAAAAATGAAAATGA-CGAAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTG-GA
* ** * * * * *
3267687 ATTAAAGCACAAGTTAGAAAATGAAAACGACTGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * * ** **
3267722 ACTAAA-CCTGAATGAGAAAATGAAAACCACCAGG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* ** *
3267756 ATTAAA-CTATGAGGCAAAAAATGAAAGCGATCAGG-
1 ATTAAATC-ATGAGTCAAAAAATGAAAATGAT-TGGA
* ** *
3267791 ATTAAATGATGAGT-AATAAAATGAAAAACAACTAGG-
1 ATTAAATCATGAGTCAA-AAAATG-AAAATGA-TTGGA
* * ** * ***
3267827 ATTATACCACAAGTCAAAAAATGAAAA-CAACCGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * ** *
3267861 GATTAAATCATGAATCAAAAAATAAAAATGACAGGG
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * ** *
3267897 ATTAAA-CAACGTGTCAAAAAATGAAAATGACAGGG
1 ATTAAATC-ATGAGTCAAAAAATGAAAATGATTGGA
* ** *
3267932 ATTAAAGCATGAGT-AAGAAAAT-ATAAAACAATGGA
1 ATTAAATCATGAGTCAA-AAAATGA-AAATGATTGGA
* ** * * *
3267967 GATTAAACCACAAGTCAAAAAGTGAAAAAGA-TAGA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ** * * *
3268002 GATTAAACCACAAGTCAAAAAATGAAAAGGATCGCA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * ** *
3268038 ATTAAA-CGATGATTCAAAAAGTGATAATGAACGGC
1 ATTAAATC-ATGAGTCAAAAAATGAAAATGATTGGA
* *
3268073 ATTAAATCATGAGTCAAAGAAATAAAAATGATTGAA
1 ATTAAATCATGAGTCAAA-AAATGAAAATGATTGGA
*
3268109 ATTAAATCATGAGTCAAAAAATG-AAATGATCAGG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGAT-TGGA
* * * **
3268143 ATTAAACCACT-AGTTAATAAATGAAACCGATTGGA
1 ATTAAATCA-TGAGTCAAAAAATGAAAATGATTGGA
* * * * *
3268178 ATTAAATCATGAGTTAGAAAATAAAAATGACTGAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * *
3268213 ATTAAATCATGAGTCTAAAACTGAAAATGATAGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * *
3268248 ATTAAACCATGAGTCAGAAAATAAAAACGACT-GA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * *
3268282 GATGAAACCACT-AGTTAGAAAATGAAAAATGA-TCGA
1 -ATTAAATCA-TGAGTCAAAAAATG-AAAATGATTGGA
* * ** ** *
3268318 GATTAAA-CTACGAGTCAAAAAATGAAGACAACAGGG
1 -ATTAAATC-ATGAGTCAAAAAATGAAAATGATTGGA
* * **
3268354 ATTAAA-CAATGAGTCAGAGAAATAAAAATGATCAGA
1 ATTAAATC-ATGAGTCA-AAAAATGAAAATGATTGGA
*
3268390 ATTAAATCATGAGT-AAGAAAATGAAAATGATGGGA
1 ATTAAATCATGAGTCAA-AAAATGAAAATGATTGGA
* * *
3268425 ATTAAATCACGAGTCAAAAAAATGAAAACGACTAGG-
1 ATTAAATCATGAGTC-AAAAAATGAAAATGA-TTGGA
* * *
3268461 ATTAAATCACGAGTCAAAAAATGAAAACGACT-GA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * ***
3268495 GATTAAAACATGGGTCAGAAAATGAAAATGA-CCAA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * *
3268530 GATTAAACCATGGGTTAGAAAATAAAAATGATT-GA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * *
3268565 GATTAAATCATGAGTCAAAAAATGAAAACGATCGGT
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* ** * * ***
3268601 ATTAAATCA-CAAACTAGAGAAATAAAAATGATCAAA
1 ATTAAATCATGAGTC-A-AAAAATGAAAATGATTGGA
* *
3268637 ATTAAATCATGAGTCAGAAAATGAAAATGA-TCGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* *
3268671 GATTAAA-CAACGAGTCAAAAAATGAAAATGATAATGAAAATTATCAAA
1 -ATTAAATC-ATGAGTCAAAAAATGAAAATGAT--TG----------GA
* * * ***
3268719 ATTAAATTATGAGTCAGAAAATAAAAATGACCAAGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* * * * ***
3268755 A-AAAAACACGAGTCAAAAAATGAAAACGATCAAA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * * *
3268789 ATTAAAGCATAAGTCAAAAACTAAAAATGACTAGG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* * * * * * *
3268824 ACTAAACCCTGAGTGAGAAAATGAAAA-CACTAGG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* ** * *
3268858 ATTAAACCATGAGTCAAAAAATGAAAGCGATCGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * ** *
3268893 ATTAAATGACGAGTCAGAAAATGGAAAACAACT-GA
1 ATTAAATCATGAGTCAAAAAAT-GAAAATGATTGGA
* * * * **
3268928 GATTATACCACGAGTCAAAAAATGAAAATAATCAG-
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * ***
3268963 AGTAAATCATGAGTC-AAAAATAAAAATGACAACG-
1 ATTAAATCATGAGTCAAAAAATGAAAATGA-TTGGA
* * * * * **
3268997 CTTAAA-CAACGCGTCAAAAAATGAATACGA-TAAA
1 ATTAAATC-ATGAGTCAAAAAATGAAAATGATTGGA
* * * *
3269031 GATTAAAGCATGAGTCAGAAAATGTAAAAT-AATGGTG
1 -ATTAAATCATGAGTCAAAAAATG-AAAATGATTGG-A
* * *
3269068 ATTAAACCAT-AGGTCAAAAAGTGAAAATGA-TCGA
1 ATTAAATCATGA-GTCAAAAAATGAAAATGATTGGA
* * * * *
3269102 GATTAAACCACGAGTTAAAAAATGGAAATGATTAGA
1 -ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* * * *
3269138 ATTAAATGACGAGT--AAAAA--AAAATG-GTCGA
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* *
3269168 CATTAAATCATGAGTGAAAGAAAT-AAGAATGACTGGA
1 -ATTAAATCATGAGTCAAA-AAATGAA-AATGATTGGA
* * *
3269205 ATCAAAGCATGAGTCAAAAAATGAAAATGATTGGG
1 ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
* *
3269240 ATTAAACCACT-AGTTAAAAAATGAAA
1 ATTAAATCA-TGAGTCAAAAAATGAAA
3269266 CTTGGTAGCT
Statistics
Matches: 4721, Mismatches: 1353, Indels: 840
0.68 0.20 0.12
Matches are distributed among these distances:
30 6 0.00
31 20 0.00
32 32 0.01
33 79 0.02
34 377 0.08
35 2798 0.59
36 977 0.21
37 132 0.03
38 71 0.02
39 14 0.00
40 48 0.01
41 52 0.01
42 15 0.00
43 4 0.00
44 4 0.00
45 2 0.00
46 4 0.00
47 82 0.02
48 4 0.00
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.20
Consensus pattern (35 bp):
ATTAAATCATGAGTCAAAAAATGAAAATGATTGGA
Found at i:3264768 original size:82 final size:83
Alignment explanation
Indices: 3264635--3264794 Score: 209
Period size: 82 Copynumber: 1.9 Consensus size: 83
3264625 TAGAGAAATA
* * *
3264635 AAAATGATCGAAATTAAGTCATGAGTCAAAAAATGAAAATAATTGAGATTAAACCATGAGTAAGA
1 AAAATGATCAAAATTAAATCATGAGTCAAAAAATGAAAATAATTGAGATTAAACCACGAGTAAGA
3264700 AAA-CAAAAATGATAATG
66 AAACCAAAAATGATAATG
* * * * *
3264717 AAAATTATCAAAATTAAATTATGAGTCAAAAAATGAAAATGATCAT-A-ATTAAAGCACGAGTCA
1 AAAATGATCAAAATTAAATCATGAGTCAAAAAATGAAAATAAT--TGAGATTAAACCACGAGTAA
3264780 GAAAACCAAAAATGA
64 GAAAACCAAAAATGA
3264795 CTAAGACTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
82 56 0.84
83 10 0.15
84 1 0.01
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.22
Consensus pattern (83 bp):
AAAATGATCAAAATTAAATCATGAGTCAAAAAATGAAAATAATTGAGATTAAACCACGAGTAAGA
AAACCAAAAATGATAATG
Found at i:3265300 original size:141 final size:141
Alignment explanation
Indices: 3265018--3265337 Score: 348
Period size: 141 Copynumber: 2.3 Consensus size: 141
3265008 AGGATTAAAC
* ** * * *
3265018 CACAAGT-TAAAAAGTGAAAATGATTAAGATCAAACCA-TGAGTC-AGAGAATGAAAATGATTGA
1 CACAAGTCTAAAAA-TGAAAACGACAAAGATTAAACCACT-ACTCAAGA-AATGAAAATGATCGA
* * * * *
3265080 AATTAAATGAAGAGTCAAAAATTGAAAATGACTTACATTAAATCACAAGTCAAAGAAATAAAAGT
63 AATTAAATCAAGAGTCAAAAATTAAAAATGACTTAAATTAAATCACAAGTCAAAAAAATAAAAAT
* *
3265145 GATCAGAATCAAAT
128 GACCAAAATCAAAT
* * **
3265159 CATAAGTC-AGAAAATGAAAATGACTGAGATTAAACCACTACTCAAGAAATGAAAATGATCGAAA
1 CACAAGTCTA-AAAATGAAAACGACAAAGATTAAACCACTACTCAAGAAATGAAAATGATCGAAA
*
3265223 TTAAATCATA-AGTCAGAAAA-TAAAAATGA-TTGAAATTAAATCACAAGTTAAAAAAATAAAAA
65 TTAAATCA-AGAGTCA-AAAATTAAAAATGACTT-AAATTAAATCACAAGTCAAAAAAATAAAAA
*
3265285 TGACCAAAATTAAAT
127 TGACCAAAATCAAAT
*
3265300 CACAAGTCTAAAACTGAAAACGACAAAGATTAAACCAC
1 CACAAGTCTAAAAATGAAAACGACAAAGATTAAACCAC
3265338 GTGTTAGAAA
Statistics
Matches: 151, Mismatches: 20, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
140 2 0.01
141 135 0.89
142 14 0.09
ACGTcount: A:0.54, C:0.12, G:0.13, T:0.21
Consensus pattern (141 bp):
CACAAGTCTAAAAATGAAAACGACAAAGATTAAACCACTACTCAAGAAATGAAAATGATCGAAAT
TAAATCAAGAGTCAAAAATTAAAAATGACTTAAATTAAATCACAAGTCAAAAAAATAAAAATGAC
CAAAATCAAAT
Found at i:3265649 original size:106 final size:102
Alignment explanation
Indices: 3264729--3265711 Score: 362
Period size: 106 Copynumber: 9.3 Consensus size: 102
3264719 AATTATCAAA
* * * * * *
3264729 ATTAAATTATGAGTCAAAAAATGAAAATGATCATAATTAAAGCACGAGTCAGAAAACCAAAAATG
1 ATTAAATCATGAGTCAGAAAATGAAAATGATCA-GATTAAATCACAAGTCA-AAAA-TAAAAATG
* * * * * *
3264794 ACTAAGACTAAAGCCTA-G-GTGAGAAAATGAAAACTACCAAG
63 AC-AAAATTAAA-CC-ACGAGTCAAAAAATGAAAACAACTAAG
* * *
3264835 ATTAAACCATGAGTCAGAAAAT-AAAAGCGATCAAGATTAAATGACAAGTCAAACAATGAAAAAT
1 ATTAAATCATGAGTCAGAAAATGAAAA-TGATC-AGATTAAATCACAAGTCAAA-AAT-AAAAAT
** * * ** ***
3264899 GACCAGGATTATACCATGAGTCAAAAAATGAAAATGACCGGG
62 GA-CAAAATTAAACCACGAGTCAAAAAATGAAAACAACTAAG
* * * **
3264941 ATTAAATCATGAGTCA-AAAAAGAAAAATGA-CGGGGATTAAAGCATGAGTCAAAAAAGTTAAAC
1 ATTAAATCATGAGTCAGAAAATG-AAAATGATC--AGATTAAATCACAAGTC-AAAAA--TAAA-
** * * * ** *
3265004 AA-GA-AGGATTAAACCACAAGTTAAAAAGTGAAAATGATTAAG
59 AATGACAAAATTAAACCACGAGTCAAAAAATGAAAACAACTAAG
* * * * * * *
3265046 ATCAAACCATGAGTCAGAGAATGAAAATGATTGAAATTAAATGA-AGAGTCAAAAATTGAAAATG
1 ATTAAATCATGAGTCAGAAAATGAAAATGA-TCAGATTAAATCACA-AGTCAAAAA-TAAAAATG
* * * * ** *
3265110 ACTTACATTAAATCACAAGTCAAAGAAAT-AAAAGTGA-TCAG
63 AC-AAAATTAAACCACGAGTCAAA-AAATGAAAA-CAACTAAG
* * * * * * *
3265151 AATCAAATCATAAGTCAGAAAATGAAAATGACTGAGATTAAACCACTACTCAAGAAATGAAAATG
1 -ATTAAATCATGAGTCAGAAAATGAAAATGA-TCAGATTAAATCACAAGTCAA-AAATAAAAATG
* * ** * * ** *
3265216 ATCGAAATTAAATCATAAGTCAGAAAATAAAAATGATTGAA-
63 A-CAAAATTAAACCACGAGTCAAAAAATGAAAACAACT-AAG
** * * * * * * * *
3265257 ATTAAATCACAAGTTAAAAAAATAAAAATGACCAAAATTAAATCACAAGTCTAAAACTGAAAACG
1 ATTAAATCATGAG-TCAGAAAATGAAAATGATC-AGATTAAATCACAAGTC-AAAAATAAAAATG
* * * * *
3265322 ACAAAGATTAAACCACGTGTTAGAAAATTAAAACAA-TAGGG
63 ACAAA-ATTAAACCACGAGTCAAAAAATGAAAACAACTA-AG
* * * * * * * * *
3265363 TTTAAACCATGAGTCA-AAGAATGAAAACGAATAAGATAAAACCACCAGTCAGAGAATGAAAAAC
1 ATTAAATCATGAGTCAGAA-AATGAAAATG-ATCAGATTAAATCACAAGTCA-AAAAT-AAAAAT
*** * *
3265427 GATCGGGATTAAACCACGAGTCAAAAAATGAAGACAAC-ATGG
62 GA-CAAAATTAAACCACGAGTCAAAAAATGAAAACAACTA-AG
* * *
3265469 ATTAAAGT-ATGAGTCAGAGAAATAAAAATGACCAGAATTAAATCACAAGTCAGAAAATAAAAAC
1 ATTAAA-TCATGAGTCAGA-AAATGAAAATGATCAG-ATTAAATCACAAGTCA-AAAATAAAAAT
* *** *
3265533 AATGGGAATTAAACCACGAGTCAAAAAATGAAAAAAACTAAG
62 GA-CAAAATTAAACCACGAGTCAAAAAATGAAAACAACTAAG
*
3265575 ATTAAATCATGAGTCAGAAAATGAAAATGATCGGTATTAAATCACAAGTCAGAGAAATAAAAATG
1 ATTAAATCATGAGTCAGAAAATGAAAATGATCAG-ATTAAATCACAAGTCA-A-AAATAAAAATG
* * * * * * *
3265640 ATCAAAATTAAATCACAAGTTAGAAAATGAAAATGATCGAA-
63 A-CAAAATTAAACCACGAGTCAAAAAATGAAAA-CAACTAAG
* *
3265681 ATTAAA-CTATGAGTCAAAAAATGGAAATGAT
1 ATTAAATC-ATGAGTCAGAAAATGAAAATGAT
3265712 AATGACAATT
Statistics
Matches: 676, Mismatches: 150, Indels: 102
0.73 0.16 0.11
Matches are distributed among these distances:
102 2 0.00
103 6 0.01
104 10 0.01
105 179 0.26
106 421 0.62
107 54 0.08
108 4 0.01
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.20
Consensus pattern (102 bp):
ATTAAATCATGAGTCAGAAAATGAAAATGATCAGATTAAATCACAAGTCAAAAATAAAAATGACA
AAATTAAACCACGAGTCAAAAAATGAAAACAACTAAG
Found at i:3266497 original size:106 final size:107
Alignment explanation
Indices: 3266319--3267530 Score: 408
Period size: 106 Copynumber: 11.5 Consensus size: 107
3266309 ATTAAATCAT
* *
3266319 GTCAAAAAAT-AAAATGACTGAA-ATTAAA-T-CATGAGTCTAAAACT-AAAAATGA-CTA-GGA
1 GTCAAAAAATGAAAATGACT-AAGATTAAACTAC-T-AGTCAAAAAATGAAAAATGATC-AGGGA
* **
3266377 TTAAACTATTAGTCAAAAAATGAAAACGATAGGGATTAAACCACAA
62 TTAAACCACAAGTCAAAAAATGAAAACGATAGGGATTAAACCACAA
* *
3266423 GTTAAAAAATGAAAATGACTAAGATGAAACTACTAGTCAAAAAATGAAAAATGATCAGGG-TTAA
1 GTCAAAAAATGAAAATGACTAAGATTAAACTACTAGTCAAAAAATGAAAAATGATCAGGGATTAA
* *
3266487 ACCACAAGTCAAAATATGAAGAC-A-ACGAGGATTAAACCACAA
66 ACCACAAGTCAAAAAATGAAAACGATA-G-GGATTAAACCACAA
* * * * * * * *
3266529 GTCAGAGAAATAAAAATGAC-CAGAATTAAATTACGAATCAAAAAATG-AAAATGACCA-GGATC
1 GTCA-AAAAATGAAAATGACTAAG-ATTAAACTACTAGTCAAAAAATGAAAAATGATCAGGGATT
* ** * * **
3266591 AAAACATGAGTTAAAAAATGAAAACCACTA-GGATTAAACCATGA
64 AAACCACAAGTCAAAAAATGAAAACGA-TAGGGATTAAACCACAA
*** * * * *
3266635 GTCAAAAAATGAAAGCAATTAGGATTAAAC-AATGAGTCCAAAAATGAAAAATGAT-AGGGATTA
1 GTCAAAAAATGAAAATGACTAAGATTAAACTACT-AGTCAAAAAATGAAAAATGATCAGGGATTA
* ** * * * * * **
3266698 TACCATGAGTCAAAAAAAGAAAATGATCGAGATTAAAACAGGA
65 AACCACAAGTCAAAAAATGAAAACGATAGGGATTAAACCACAA
* * * * *
3266741 GTTAAAAAATAAAAAT-A-TAGGGATTAAACAAC-ACATCAAAAAATG-AAAATGAT-AGGGATT
1 GTCAAAAAATGAAAATGACTA-AGATTAAACTACTA-GTCAAAAAATGAAAAATGATCAGGGATT
* * * *
3266801 AAAGCACAAGCCAAAAAATGTAAAACAATGGGGATTAAA-CAGCAA
64 AAACCACAAGTCAAAAAATG-AAAACGATAGGGATTAAACCA-CAA
* * ** * **
3266846 GTCAAAAATTGGAAATGACCGAGATTAAACCA-TGAGTCAAAAAATGAAAAA-GATCA-TAATTA
1 GTCAAAAAATGAAAATGACTAAGATTAAACTACT-AGTCAAAAAATGAAAAATGATCAGGGATTA
** ** * ** ** * **
3266908 AAAGATGAGTCAAAAAATAAAAATAACT-GACATTAAATCATGA
65 AACCACAAGTCAAAAAATGAAAACGA-TAGGGATTAAACCACAA
* * * * * * *
3266951 GTCAATGAAATAAAAATGATTGAA-ATCAAA-TCACGAGTC--AGAAT-CAAAATGATC-GGGAT
1 GTCAA-AAAATGAAAATGACT-AAGATTAAACT-ACTAGTCAAAAAATGAAAAATGATCAGGGAT
* * * ** * * **
3267010 TAAACGACTAGTCAAGAAACAAAAATGATCA-GAATTAAATTACAA
63 TAAACCACAAGTCAAAAAATGAAAACGAT-AGGGATTAAACCACAA
* * ** * *
3267055 GTCAAAAAATAAAAATGATCGAA-ATTAAA-T-CATAAGTTTAAAACT-AAAAATGATC-GAGAT
1 GTCAAAAAATGAAAATGA-CTAAGATTAAACTAC-T-AGTCAAAAAATGAAAAATGATCAGGGAT
* * * * **
3267115 TAAACCACAAGTCAAAAAATCAAAATGACAAGGATTAAACCATGA
63 TAAACCACAAGTCAAAAAATGAAAACGATAGGGATTAAACCACAA
* * ** * * * * * *
3267160 GTCAGAGAACAAAAATGACTGAGATGAAGCCACCAATCAAAAAATGAAAAATGATC-GGGATTAA
1 GTCAAAAAATGAAAATGACTAAGATTAAACTACTAGTCAAAAAATGAAAAATGATCAGGGATTAA
* ** * * * * * **
3267224 AGCATGAGTCAGAAAATGAAGACAACAGGGACTAAACCATGA
66 ACCACAAGTCAAAAAATGAAAACGATAGGGATTAAACCACAA
* * * * * *
3267266 CTCAGAGAAATAAAAATGAC-CAGAATTAAA-T-CATGAGTCAGAAAATG-AAAACGAT--GGGA
1 GTCA-AAAAATGAAAATGACTAAG-ATTAAACTAC-T-AGTCAAAAAATGAAAAATGATCAGGG-
* * * * * * *
3267325 ATTAAACTACAAGTCAGAAAATGAAAATGACCA-AGATTAAATCACGA
61 ATTAAACCACAAGTCAAAAAATGAAAACGA-TAGGGATTAAACCACAA
* * * * * **
3267372 GTCAAAAAATAAAAATGATTGAGATTAAACCT-CGAGTCAGAAAAT-AAAAATGA-CTTGGATTA
1 GTCAAAAAATGAAAATGACTAAGATTAAA-CTACTAGTCAAAAAATGAAAAATGATCAGGGATTA
* * * * * * ***
3267434 AATCACGAGTTAGAAAATGAAAATGA-ATGGATTAAACCATGG
65 AACCACAAGTCAAAAAATGAAAACGATAGGGATTAAACCACAA
* * *
3267476 GTTAAAAAATAAAAACGA-TCAAGATTAAA-T-CATGAGTCAAAAAATG-AAAATGATC
1 GTCAAAAAATGAAAATGACT-AAGATTAAACTAC-T-AGTCAAAAAATGAAAAATGATC
3267531 GGTATGAAAT
Statistics
Matches: 832, Mismatches: 207, Indels: 137
0.71 0.18 0.12
Matches are distributed among these distances:
101 1 0.00
102 2 0.00
103 30 0.04
104 147 0.18
105 260 0.31
106 317 0.38
107 74 0.09
109 1 0.00
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (107 bp):
GTCAAAAAATGAAAATGACTAAGATTAAACTACTAGTCAAAAAATGAAAAATGATCAGGGATTAA
ACCACAAGTCAAAAAATGAAAACGATAGGGATTAAACCACAA
Found at i:3267960 original size:106 final size:103
Alignment explanation
Indices: 3267842--3268698 Score: 440
Period size: 106 Copynumber: 8.1 Consensus size: 103
3267832 ACCACAAGTC
* * * * *
3267842 AAAAAATGAAAACAACCGAGATTAAATCATGAATCAAAAAATAAAAATGACAGGGATTAAA-CAA
1 AAAAAATAAAAACGACCGAGATTAAATCATGAGTCAAAAAATAAAAATGACTGAGATTAAATC-A
*
3267906 CGTGTCAAAAAATGAAAATGACAGGGATTAAAGCATGAGT
65 CGAGTCAAAAAATGAAAATGACAGGGATTAAA-CATGAGT
* ** * ** *
3267946 AAGAAAATATAAAACAATGGAGATTAAACCACAAGTCAAAAAGTGAAAAA-GA-TAGAGATTAAA
1 AA-AAAATA-AAAACGACCGAGATTAAATCATGAGTCAAAAAAT-AAAAATGACT-GAGATTAAA
* * * ** *
3268009 CCACAAGTCAAAAAATGAAAAGGATC-GCAATTAAACGATGATT
62 TCACGAGTCAAAAAATGAAAATGA-CAGGGATTAAAC-ATGAGT
* * * * * * *
3268052 CAAAAAGTGATAATGAACG-GCATTAAATCATGAGTCAAAGAAATAAAAATGATTGAAATTAAAT
1 -AAAAAATAAAAACGACCGAG-ATTAAATCATGAGTCAAA-AAATAAAAATGACTGAGATTAAAT
*
3268116 CATGAGTCAAAAAATG-AAATGATCA-GGATTAAACCACT-AGTT
63 CACGAGTCAAAAAATGAAAATGA-CAGGGATTAAA-CA-TGAG-T
* * * ** * * *
3268158 AATAAATGAAACCGATTG-GAATTAAATCATGAGTTAGAAAATAAAAATGACTGAAATTAAATCA
1 AAAAAATAAAAACGACCGAG-ATTAAATCATGAGTCAAAAAATAAAAATGACTGAGATTAAATCA
* * * *
3268222 TGAGTCTAAAACTGAAAATGATAGGGATTAAACCATGAGT
65 CGAGTCAAAAAATGAAAATGACAGGGATTAAA-CATGAGT
* * * * * *
3268262 CAGAAAATAAAAACGACTGAGATGAAACCACT-AGTTAGAAAATGAAAAATGA-TCGAGATTAAA
1 -AAAAAATAAAAACGACCGAGATTAAATCA-TGAGTCAAAAAAT-AAAAATGACT-GAGATTAAA
* **
3268325 -CTACGAGTCAAAAAATGAAGACAACAGGGATTAAACAATGAGT
62 TC-ACGAGTCAAAAAATGAAAATGACAGGGATTAAAC-ATGAGT
* * * * *
3268368 CAGAGAAATAAAAATGATC-AGAATTAAATCATGAGT-AAGAAAATGAAAATGA-TGGGAATTAA
1 -A-AAAAATAAAAACGACCGAG-ATTAAATCATGAGTCAA-AAAATAAAAATGACTGAG-ATTAA
* *
3268430 ATCACGAGTCAAAAAAATGAAAACGACTA-GGATTAAATCACGAGT
61 ATCACGAGTC-AAAAAATGAAAATGAC-AGGGATTAAA-CATGAGT
* * * * * * ** *
3268475 CAAAAAATGAAAACGACTGAGATTAAAACATGGGTCAGAAAATGAAAATGACCAAGATTAAACCA
1 -AAAAAATAAAAACGACCGAGATTAAATCATGAGTCAAAAAATAAAAATGACTGAGATTAAATCA
* * * * * ** *
3268540 TGGGTTAGAAAATAAAAATGATTGAGATTAAATCATGAGT
65 CGAGTCAAAAAATGAAAATGACAGGGATTAAA-CATGAGT
* * * ** * * *
3268580 CAAAAAATGAAAACGATCG-GTATTAAATCA-CAAACTAGAGAAATAAAAATGA-TCAAAATTAA
1 -AAAAAATAAAAACGACCGAG-ATTAAATCATGAGTC-A-AAAAATAAAAATGACT-GAGATTAA
* * * *
3268642 ATCATGAGTCAGAAAATGAAAATGATC-GAGATTAAACAACGAGT
61 ATCACGAGTCAAAAAATGAAAATGA-CAGGGATTAAAC-ATGAGT
*
3268686 CAAAAAATGAAAA
1 -AAAAAATAAAAA
3268699 TGATAATGAA
Statistics
Matches: 591, Mismatches: 117, Indels: 88
0.74 0.15 0.11
Matches are distributed among these distances:
104 45 0.08
105 182 0.31
106 292 0.49
107 70 0.12
108 2 0.00
ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20
Consensus pattern (103 bp):
AAAAAATAAAAACGACCGAGATTAAATCATGAGTCAAAAAATAAAAATGACTGAGATTAAATCAC
GAGTCAAAAAATGAAAATGACAGGGATTAAACATGAGT
Found at i:3268020 original size:141 final size:141
Alignment explanation
Indices: 3267770--3268029 Score: 325
Period size: 141 Copynumber: 1.8 Consensus size: 141
3267760 AACTATGAGG
* * *
3267770 CAAAAAATGAAAGCGATCAGGATTAAATGATGAGTAATAAAATGAAAAACAACTAGGATTATACC
1 CAAAAAATGAAAACGATCAGGATTAAATGATGAGTAAGAAAATGAAAAACAACTAGGATTAAACC
* * *
3267835 ACAAGTCAAAAAATGAAAACAACCGAGATTAAATCATGAATCAAAAAATAAAAATGACAGGGATT
66 ACAAGTCAAAAAATGAAAACAACAGAGATTAAACCATCAATCAAAAAATAAAAATGACAGGGATT
3267900 AAACAACGTGT
131 AAACAACGTGT
* *
3267911 CAAAAAATGAAAATGA-CAGGGATTAAA-GCATGAGTAAGAAAAT-ATAAAACAA-TGGAGATTA
1 CAAAAAATGAAAACGATCA-GGATTAAATG-ATGAGTAAGAAAATGA-AAAACAACTAG-GATTA
* * *
3267972 AACCACAAGTCAAAAAGTGAAAA-AGATAGAGATTAAACCA-CAAGTCAAAAAATGAAAA
62 AACCACAAGTCAAAAAATGAAAACA-ACAGAGATTAAACCATCAA-TCAAAAAATAAAAA
3268030 GGATCGCAAT
Statistics
Matches: 102, Mismatches: 11, Indels: 12
0.82 0.09 0.10
Matches are distributed among these distances:
140 9 0.09
141 93 0.91
ACGTcount: A:0.56, C:0.11, G:0.16, T:0.17
Consensus pattern (141 bp):
CAAAAAATGAAAACGATCAGGATTAAATGATGAGTAAGAAAATGAAAAACAACTAGGATTAAACC
ACAAGTCAAAAAATGAAAACAACAGAGATTAAACCATCAATCAAAAAATAAAAATGACAGGGATT
AAACAACGTGT
Found at i:3268055 original size:141 final size:139
Alignment explanation
Indices: 3267756--3268168 Score: 324
Period size: 141 Copynumber: 2.9 Consensus size: 139
3267746 AACCACCAGG
* ** **
3267756 ATTAAACTATGAGGCAAAAAATGAAAGCGATCA-GGATTAAATG-ATGAGTAATAAAATGAAAAA
1 ATTAAACAATGATTCAAAAAATGAAAATGA-CAGGGATTAAA-GCATGAGTAA-AAAAT-AAAAA
* ** * *
3267819 CAACTAG-GATTATACCACAAGTCAAAAAATGAAAACA-ACCGAGATTAAATCATGAA-TCAAAA
62 CAA-TAGAGATTAAACCACAAGTCAAAAAATGAAAA-AGATAGAGATTAAACCA-CAAGTCAAAA
* * **
3267881 AATAAAAATGACAGGG
124 AATGAAAAGGACAGCA
*
3267897 ATTAAACAACG-TGTCAAAAAATGAAAATGACAGGGATTAAAGCATGAGTAAGAAAATATAAAAC
1 ATTAAACAATGAT-TCAAAAAATGAAAATGACAGGGATTAAAGCATGAGTAA-AAAATA-AAAAC
* *
3267961 AATGGAGATTAAACCACAAGTCAAAAAGTGAAAAAGATAGAGATTAAACCACAAGTCAAAAAATG
63 AATAGAGATTAAACCACAAGTCAAAAAATGAAAAAGATAGAGATTAAACCACAAGTCAAAAAATG
3268026 AAAAGGATC-GCA
128 AAAAGGA-CAGCA
* * * * * *
3268038 ATTAAACGATGATTCAAAAAGTGATAATGA-ACGGCATTAAATCATGAGTCAAAGAAATAAAAAT
1 ATTAAACAATGATTCAAAAAATGAAAATGACA-GGGATTAAAGCATGAGT-AAA-AAATAAAAAC
* * * * ** * * * *
3268102 GATTGAAATTAAATCATGAGTCAAAAAATG-AAATGATCAG-GATTAAACCACTAGTTAATAAAT
63 AATAGAGATTAAACCACAAGTCAAAAAATGAAAAAGAT-AGAGATTAAACCACAAGTCAAAAAAT
3268165 GAAA
127 GAAA
3268169 CCGATTGGAA
Statistics
Matches: 223, Mismatches: 36, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
140 40 0.18
141 174 0.78
142 9 0.04
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.20
Consensus pattern (139 bp):
ATTAAACAATGATTCAAAAAATGAAAATGACAGGGATTAAAGCATGAGTAAAAAATAAAAACAAT
AGAGATTAAACCACAAGTCAAAAAATGAAAAAGATAGAGATTAAACCACAAGTCAAAAAATGAAA
AGGACAGCA
Found at i:3268641 original size:141 final size:140
Alignment explanation
Indices: 3268073--3268702 Score: 378
Period size: 141 Copynumber: 4.5 Consensus size: 140
3268063 AATGAACGGC
* * * * * * *
3268073 ATTAAATCATGAGTCAAAGAAATAAAAATGATTGAAATTAAATCATGAGTCAA-AAAAT-GAAAT
1 ATTAAAACATGAGTCAGA-AAATGAAAATGA-TCAGATTAAACCATGAGT-AAGAAAATAAAAAT
* * * * * * * * ** * * *
3268136 GATCAGGATTAAACCACTAGT-TAATAAATGAAACCGA-TTGGAATTAAATCATGAGTTAGAAAA
63 GATGAGAATTAAATCACGAGTCAAAAAAATGAAAACGACTAGG-ATTAAATCACAACTCAAAAAA
* *
3268199 TAAAAATGACTGAA
127 TAAAAACGACTAAA
* * * *
3268213 ATTAAATCATGAGTCTA-AAACTGAAAATGAT-AGGGATTAAACCATGAGTCAGAAAATAAAAAC
1 ATTAAAACATGAGTC-AGAAAATGAAAATGATCA--GATTAAACCATGAGTAAGAAAATAAAAAT
* * * * * * * * *
3268276 GACTGAG-ATGAAACCACTAGT-TAGAAAATGAAAAATGA-TCGAGATTAAA-CTACGAGTCAAA
63 GA-TGAGAATTAAATCACGAGTCAAAAAAATG-AAAACGACTAG-GATTAAATC-ACAACTCAAA
* * * **
3268337 AAATGAAGACAAC-AGGG
124 AAATAAAAACGACTA-AA
* * *
3268354 ATT-AAACAATGAGTCAGAGAAATAAAAATGATCAGAATTAAATCATGAGTAAGAAAATGAAAAT
1 ATTAAAAC-ATGAGTCAGA-AAATGAAAATGATCAG-ATTAAACCATGAGTAAGAAAATAAAAAT
* * *
3268418 GATGGGAATTAAATCACGAGTCAAAAAAATGAAAACGACTAGGATTAAATCACGAGTCAAAAAAT
63 GATGAGAATTAAATCACGAGTCAAAAAAATGAAAACGACTAGGATTAAATCACAACTCAAAAAAT
* * *
3268483 GAAAACGACTGAG
128 AAAAACGACTAAA
* * * *
3268496 ATTAAAACATGGGTCAGAAAATGAAAATGACCAAGATTAAACCATGGGTTAGAAAATAAAAATGA
1 ATTAAAACATGAGTCAGAAAATGAAAATGATC-AGATTAAACCATGAGTAAGAAAATAAAAATGA
* * *
3268561 TTGAG-ATTAAATCATGAGTC-AAAAAATGAAAACGA-TCGGTATTAAATCACAAACT-AGAGAA
65 -TGAGAATTAAATCACGAGTCAAAAAAATGAAAACGACTAGG-ATTAAATCAC-AACTCA-AAAA
*
3268622 ATAAAAATGA-TCAAA
126 ATAAAAACGACT-AAA
* * * *
3268637 ATTAAATCATGAGTCAGAAAATGAAAATGATCGAGATTAAACAACGAGTCAA-AAAATGAAAATG
1 ATTAAAACATGAGTCAGAAAATGAAAATGATC-AGATTAAACCATGAGT-AAGAAAATAAAAATG
3268701 AT
64 AT
3268703 AATGAAAATT
Statistics
Matches: 393, Mismatches: 69, Indels: 56
0.76 0.13 0.11
Matches are distributed among these distances:
137 1 0.00
138 2 0.01
139 31 0.08
140 74 0.19
141 168 0.43
142 102 0.26
143 15 0.04
ACGTcount: A:0.52, C:0.10, G:0.17, T:0.21
Consensus pattern (140 bp):
ATTAAAACATGAGTCAGAAAATGAAAATGATCAGATTAAACCATGAGTAAGAAAATAAAAATGAT
GAGAATTAAATCACGAGTCAAAAAAATGAAAACGACTAGGATTAAATCACAACTCAAAAAATAAA
AACGACTAAA
Found at i:3268725 original size:82 final size:82
Alignment explanation
Indices: 3268625--3268780 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 82
3268615 TAGAGAAATA
* * * **
3268625 AAAATGATCAAAATTAAATCATGAGTCAGAAAATGAAAATGATCGAG-ATTAAACAACGAGTCAA
1 AAAATGATCAAAATTAAATCATGAGTCAGAAAATAAAAATGACCAAGAAAAAAAC-ACGAGTCAA
3268689 AAAATGAAAATGATAATG
65 AAAATGAAAATGATAATG
* *
3268707 AAAATTATCAAAATTAAATTATGAGTCAGAAAATAAAAATGACCAAGAAAAAAACACGAGTCAAA
1 AAAATGATCAAAATTAAATCATGAGTCAGAAAATAAAAATGACCAAGAAAAAAACACGAGTCAAA
3268772 AAATGAAAA
66 AAATGAAAA
3268781 CGATCAAAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
82 61 0.92
83 5 0.08
ACGTcount: A:0.58, C:0.09, G:0.13, T:0.19
Consensus pattern (82 bp):
AAAATGATCAAAATTAAATCATGAGTCAGAAAATAAAAATGACCAAGAAAAAAACACGAGTCAAA
AAATGAAAATGATAATG
Found at i:3272570 original size:20 final size:21
Alignment explanation
Indices: 3272545--3272585 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
3272535 ATCAATTGGG
3272545 CACAAAAATAA-AAAAAATTT
1 CACAAAAATAATAAAAAATTT
* *
3272565 CACAAAATTAATAAAACATTT
1 CACAAAAATAATAAAAAATTT
3272586 AAGTATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.24
Consensus pattern (21 bp):
CACAAAAATAATAAAAAATTT
Found at i:3276130 original size:35 final size:35
Alignment explanation
Indices: 3276080--3278543 Score: 520
Period size: 35 Copynumber: 70.0 Consensus size: 35
3276070 CAAGGCTAAC
*
3276080 AAAAATGATCGAA-ATTAAATCATGAGTCAGAAAAT
1 AAAAATGA-CCAAGATTAAATCATGAGTCAGAAAAT
* ** *
3276115 AAAAATGACCAAAATTAAATCACAAGTCTA-AAACT
1 AAAAATGACCAAGATTAAATCATGAGTC-AGAAAAT
* ** * * *
3276150 TAAAACAACCGAGATTAAACCATGACTCAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * * ** *
3276185 TAAAATGA-CAGGAATTAAACCACAAGTCAAAAAAT
1 AAAAATGACCAAG-ATTAAATCATGAGTCAGAAAAT
* * * *
3276220 AAAAACGACCGAGATGAAACCACT-AGTCAGAAAAT
1 AAAAATGACCAAGATTAAATCA-TGAGTCAGAAAAT
** * ** * *
3276255 ATAAAACAATCGGGATTAAACCATGAGTCAAAAAAT
1 A-AAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * ** * * * *
3276291 GAAGACAACGAAGATTAAACCACGAGTCAAAGAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGA-AAAT
* * *
3276327 AAAAATGACTACA-ATTAAATCACGAGTTAGAAAAT
1 AAAAATGACCA-AGATTAAATCATGAGTCAGAAAAT
** * * *
3276362 AAAAATTGATGGGAA-TTTAAATCACGAGTCA-AAAAA
1 AAAAA-TGA--CCAAGATTAAATCATGAGTCAGAAAAT
* * *
3276398 AGAAAATGACCAGGATTAAATCATGAGTTAAAAAAT
1 A-AAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * *
3276434 AAAAA--ACTAAGGGATTAAACCATGAGTCAAAAAAAT
1 AAAAATGACCAA--GATTAAATCATGAGTC-AGAAAAT
* *
3276470 AAAAATGACC-TGAATTAAATCATGAGTCAAAAAAT
1 AAAAATGACCAAG-ATTAAATCATGAGTCAGAAAAT
* * * *
3276505 GAAAACGACCAAGATTAAACCATGGGTCAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* ** ** * *
3276540 GAAAACAACTGAGATTAAACCAT-AGGTTAGAAAAT
1 AAAAATGACCAAGATTAAATCATGA-GTCAGAAAAT
** * * * *
3276575 GAAAAATGACTGAGATTATACCACGAGTCAAAAAAT
1 -AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
*
3276611 GAAAATGACCAAGATTAAATCATGAGT-A-AAAA-
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * * *
3276643 AAAAA--AACAGGGATTAAA-CAATGTGTCAAAAAAT
1 AAAAATGACCA-AGATTAAATC-ATGAGTCAGAAAAT
* * * * * * *
3276677 GAAAACGA-TAGGGATTAAAGCACGAGTCAAAAAAT
1 AAAAATGACCA-AGATTAAATCATGAGTCAGAAAAT
* ** *** * *
3276712 ATTAAACAACGGGGATT-AATCGATAAGTTA-AAAAGT
1 A-AAAATGACCAAGATTAAATC-ATGAGTCAGAAAA-T
* * * *
3276748 GAAAATGACCGAGATTAAACCATGAGTCAGAGAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * *
3276783 GAAAATGA-CTAGAATTAAA-CGATGAGTTA-AAAATT
1 AAAAATGACCAAG-ATTAAATC-ATGAGTCAGAAAA-T
* ** *
3276818 GAAAATGA-CTGGCATTAAATCATGAGTCA-AAGAAA
1 AAAAATGACCAAG-ATTAAATCATGAGTCAGAA-AAT
* * *
3276853 AAAAATAACCGAA-ATCAAATTATGAGTCAGAAAAT
1 AAAAATGACC-AAGATTAAATCATGAGTCAGAAAAT
* * *
3276888 CAAAATGACCAAGATTAAA-CTACT-ACTTA-AGAAAT
1 AAAAATGACCAAGATTAAATC-A-TGAGTCAGA-AAAT
* ** * *
3276923 GAAAACAACC-AGAATTAAATCACGAGTTAGAAAAT
1 AAAAATGACCAAG-ATTAAATCATGAGTCAGAAAAT
* * *
3276958 AAAAATGATCGAAG-TTAAATCATGAATCTA-AAACT
1 AAAAATGA-CCAAGATTAAATCATGAGTC-AGAAAAT
* * *
3276993 GAAAATGACCAGGATTAAACCATGAGTCAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* *
3277028 AAAAA-AAACAATGATTAAATCATGAGTCAG----T
1 AAAAATGACCAA-GATTAAATCATGAGTCAGAAAAT
* * * *
3277059 --GAATGACTAAGATAAAACCACT-AGTCAGAAAAT
1 AAAAATGACCAAGATTAAATCA-TGAGTCAGAAAAT
* * * *
3277092 GAAAAACGATCAGGATTAAA-CTAGGAGTCAG-AAA-
1 -AAAAATGACCAAGATTAAATC-ATGAGTCAGAAAAT
* *
3277126 AAGAA-GACAATAGGGATTAAA-CTATGAGTCAGAGAAAT
1 AAAAATGACCA-A--GATTAAATC-ATGAGTCAGA-AAAT
* * *
3277164 AAAAATGATC-AGAATTAAATCACGAGTCAAAAAAT
1 AAAAATGACCAAG-ATTAAATCATGAGTCAGAAAAT
* * *** * ** *
3277199 GAAGATGA-TGGGAATTAAACCACCAGTCAAAAAAT
1 AAAAATGACCAAG-ATTAAATCATGAGTCAGAAAAT
* **
3277234 GAAAATGATTAAGATTAAAT-ATGAGTCAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * ** * *
3277268 GAAAA-CAATAGGTATTAAATCA-CATGTCAGAGAAAT
1 AAAAATGACCAAG-ATTAAATCATGA-GTCAGA-AAAT
* * * *
3277304 AAAAATGATCAAAATTAAATCACGAGTTAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* ** * * * **
3277339 GAAAACAATCGAGATTAAACCACAAGTCAGAAAAGGAAAATGAT
1 AAAAATGACCAAGATTAAATCATGAGTC-----A-G-AAA--AT
* ** * *
3277383 AATGAAAATTACCATAATTAAATTATGAGTCAAAAAAT
1 -A--AAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * * * * *
3277421 GAAAATGATCAGGATTAAAACATGAGTTAAAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * **** * **
3277456 GAAAACG-GTTGGAATTAAAGCACAAGTCAGAAAAT
1 AAAAATGACCAAG-ATTAAATCATGAGTCAGAAAAT
* * * * * * *
3277491 GAAAATGACTAGGACTAAACCCTGAGTGAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* ** * * * *
3277526 GAAAACCACCAGGATTAAACCACGAATCAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* ** * * *
3277561 GAAAGCGATCGAGATT-AATCGATGAGTTAGAAAAT
1 AAAAATGACCAAGATTAAATC-ATGAGTCAGAAAAT
* * * * *
3277596 GAAAAATGATCGAGATTATACCATGAGTCACAAAAT
1 -AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * ** * *
3277632 GAAAACGACCTGGATTAAATCACGACTCA-ACAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGA-AAAT
* ** *
3277667 AAAAATGA-CAGGGATTAAAAAATGTGTCA-AAAAT
1 AAAAATGACCA-AGATTAAATCATGAGTCAGAAAAT
* * * ** *
3277701 AAAAAAGA-TAGAGATTAAAACACAAGTTAGAAAAT
1 AAAAATGACCA-AGATTAAATCATGAGTCAGAAAAT
* ** *** * **
3277736 GTAAAACAATGGAGATTAAACCACAAGTCA-AAAAGT
1 -AAAAATGACCAAGATTAAATCATGAGTCAGAAAA-T
* *** * *
3277772 GAAAATGATTGAGATTAAACCATGAGTTAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * * * *
3277807 GAAAACGGCCAAAATTAAA-CAATGAGTCAAAAAAT
1 AAAAATGACCAAGATTAAATC-ATGAGTCAGAAAAT
* * * * *
3277842 GAAAATGACCGACATTAAATCACGAGTCAAAGAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGA-AAAT
* * * * *
3277878 AAAAATTATCGAA-ATCAAATCACGAGTAAGAAAAT
1 AAAAATGA-CCAAGATTAAATCATGAGTCAGAAAAT
* * * * *
3277913 GAAAATAACCAGGATTAAACCACT-AGTCAAAAAAT
1 AAAAATGACCAAGATTAAATCA-TGAGTCAGAAAAT
** * * *
3277948 GGAAATGA-CTAGAATTAAATCATGAATCAAAAAAT
1 AAAAATGACCAAG-ATTAAATCATGAGTCAGAAAAT
* * **
3277983 AAAAATGA-CATAAATTAAATCACGAGTCTA-AATCT
1 AAAAATGACCA-AGATTAAATCATGAGTC-AGAAAAT
* * * *
3278018 GAAAATGACTAGGATTAAAGTAAT-AGTCAGAAAAT
1 AAAAATGACCAAGATTAAA-TCATGAGTCAGAAAAT
* * * * *
3278053 TAAAATGA-TAAGGGTTAAACCATGAGTTA-AACAAT
1 AAAAATGACCAA-GATTAAATCATGAGTCAGAA-AAT
* *** * * **
3278088 GAAAATGATTGAGATGAAACCACCAGTCAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * *
3278123 GAAAAATGATCAAGATTAAATCACGAGTCAAAAAAT
1 -AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* ** *** * ** *
3278159 AAAGACAACGGGGATTAAACCACAAGTCAAAGAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGA-AAAT
*
3278195 AAAAATGACC-AGAATTAAATCATGAGTAAGAAAAT
1 AAAAATGACCAAG-ATTAAATCATGAGTCAGAAAAT
* **** * *
3278230 AAAAA-CAATGGGAATTAAACCATGAGTTAGAAAAT
1 AAAAATGACCAAG-ATTAAATCATGAGTCAGAAAAT
* * * * *
3278265 GAAAACGA-CAGGGATTAAATCATTAGTTAGAAAAT
1 AAAAATGACCA-AGATTAAATCATGAGTCAGAAAAT
* * *
3278300 AAAAAAGACAAAGATTAAACCATGAGTCAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * * ** *
3278335 AAAAACGACCCAGATTAAATTACAAGTTAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* * * * *
3278370 GAAAACGA-CAGGGATTAAACCATGGGTCAGAAAAT
1 AAAAATGACCA-AGATTAAATCATGAGTCAGAAAAT
* ** *** * * * *
3278405 GAAAACAACTGGGATTACACCATGGGTTAGAAAAT
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
* ***
3278440 -AAAACGATGGAGATTAAATCACT-AGTCAGAAAAT
1 AAAAATGACCAAGATTAAATCA-TGAGTCAGAAAAT
* * * *
3278474 GAAAATGATC-AGTATTAAATCATAAGTTAGAGAAAT
1 AAAAATGACCAAG-ATTAAATCATGAGTCAGA-AAAT
* * *
3278510 AAAAATGATCAAAATTAAATCATGAGTCAAAAAA
1 AAAAATGACCAAGATTAAATCATGAGTCAGAAAA
3278544 CGAAAACAAT
Statistics
Matches: 1815, Mismatches: 467, Indels: 294
0.70 0.18 0.11
Matches are distributed among these distances:
29 16 0.01
30 8 0.00
31 13 0.01
32 8 0.00
33 20 0.01
34 129 0.07
35 1159 0.64
36 387 0.21
37 36 0.02
38 9 0.00
39 2 0.00
40 4 0.00
41 1 0.00
42 4 0.00
44 2 0.00
47 17 0.01
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (35 bp):
AAAAATGACCAAGATTAAATCATGAGTCAGAAAAT
Found at i:3276351 original size:36 final size:35
Alignment explanation
Indices: 3276092--3282127 Score: 462
Period size: 35 Copynumber: 171.9 Consensus size: 35
3276082 AAATGATCGA
* * * *
3276092 AATTAAATCATGAGTCAGAAAATAAAAATGACCAA
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * ** *
3276127 AATTAAATCACAAGTCTAAAACTTAAAACAAC-CG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3276161 AGATTAAACCATGACTCAGAAAATTAAAATGAC-AGG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTA-G
* * * *
3276197 AATTAAACCACAAGTCAAAAAATAAAAACGAC-CG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * * *
3276231 AGATGAAACCACTAGTCAGAAAATATAAAA-CAATCGG
1 A-ATTAAATCACGAGTCAAAAAATA-AAAATGACT-AG
* * * *
3276268 GATTAAACCATGAGTCAAAAAATGAAGACAACGA--AG
1 AATTAAATCACGAGTCAAAAAAT-AA-A-AATGACTAG
* *
3276304 -ATTAAACCACGAGTCAAAGAAATAAAAATGACTAC
1 AATTAAATCACGAGTCAAA-AAATAAAAATGACTAG
* * *
3276339 AATTAAATCACGAGTTAGAAAATAAAAATTGA-TGGG
1 AATTAAATCACGAGTCAAAAAATAAAAA-TGACT-AG
*
3276375 AATTTAAATCACGAGTCAAAAAA-AGAAAATGACCAG
1 AA-TTAAATCACGAGTCAAAAAATA-AAAATGACTAG
* * *
3276411 GATTAAATCATGAGTTAAAAAATAAAAA--ACTAAGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACT-A-G
* * *
3276446 GATTAAACCATGAGTCAAAAAAATAAAAATGACCT-G
1 AATTAAATCACGAGTC-AAAAAATAAAAATGA-CTAG
* * * *
3276482 AATTAAATCATGAGTCAAAAAATGAAAACGACCA-
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * **
3276516 AGATTAAACCATGGGTCAGAAAATGAAAACAACT-G
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3276551 AGATTAAACCA-TAGGTTAGAAAATGAAAAATGACT-G
1 A-ATTAAATCACGA-GTCAAAAAAT-AAAAATGACTAG
* * * *
3276587 AGATTATACCACGAGTCAAAAAATGAAAATGACCA-
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
*
3276622 AGATTAAATCATGAGT-AAAAAA-AAAAA--AC-AGG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTA-G
* * * * *
3276654 GATTAAA-CAATGTGTCAAAAAATGAAAACGA-TAGG
1 AATTAAATC-ACGAGTCAAAAAATAAAAATGACTA-G
* * * ** **
3276689 GATTAAAGCACGAGTCAAAAAATATTAAACAACGGG
1 AATTAAATCACGAGTCAAAAAATA-AAAATGACTAG
* ** * * * *
3276725 GATT-AATCGATAAGTTAAAAAGTGAAAATGAC-CG
1 AATTAAATC-ACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3276759 AGATTAAACCATGAGTCAGAGAATGAAAATGACTAG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3276795 AATTAAA-CGATGAGTTAAAAATTGAAAATGACTGG
1 AATTAAATC-ACGAGTCAAAAAATAAAAATGACTAG
* * * *
3276830 CATTAAATCATGAGTCAAAGAAA-AAAAATAAC-CG
1 AATTAAATCACGAGTCAAA-AAATAAAAATGACTAG
* * * * * *
3276864 AAATCAAATTATGAGTCAGAAAATCAAAATGACCA-
1 -AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * ** *
3276899 AGATTAAA-CTACTACTTAAGAAATGAAAACAACCAG
1 A-ATTAAATC-ACGAGTCAAAAAATAAAAATGACTAG
* * *
3276935 AATTAAATCACGAGTTAGAAAATAAAAATGA-TCG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * *
3276969 AAGTTAAATCATGAATCTAAAACTGAAAATGACCAG
1 AA-TTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * ** *
3277005 GATTAAACCATGAGTCAGAAAATAAAAAAAACAATG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTA-G
* * *
3277041 -ATTAAATCATGAGTC----AGT--GAATGACTA-
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3277068 AGATAAAACCACTAGTCAGAAAATGAAAAACGA-TCAG
1 A-ATTAAATCACGAGTCAAAAAAT-AAAAATGACT-AG
* * * *
3277105 GATTAAA-CTAGGAGTCAGAAAAAGAAGACAAT-A--GG
1 AATTAAATC-ACGAGTCA-AAAAATAA-A-AATGACTAG
* * *
3277140 GATTAAA-CTATGAGTCAGAGAAATAAAAATGA-TCAG
1 AATTAAATC-ACGAGTCA-AAAAATAAAAATGACT-AG
* * *
3277176 AATTAAATCACGAGTCAAAAAATGAAGATGA-TGGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACT-AG
* * * *
3277211 AATTAAACCACCAGTCAAAAAATGAAAATGATTA-
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3277245 AGATTAAAT-ATGAGTCAGAAAATGAAAA-CAATAGG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTA-G
* * *
3277280 TATTAAATCAC-ATGTCAGAGAAATAAAAATGA-TCAA
1 AATTAAATCACGA-GTCA-AAAAATAAAAATGACT-AG
* * * * * *
3277316 AATTAAATCACGAGTTAGAAAATGAAAA-CAATCG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3277350 AGATTAAACCACAAGTCAGAAAAGGAAAATGATAATGAAAATTACCAT
1 A-ATTAAATCACGAGTC-----A--AAAA--AT-A--AAAATGACTAG
* * *
3277398 AATTAAATTATGAGTCAAAAAATGAAAATGA-TCAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACT-AG
* * * * * * ** *
3277433 GATTAAAACATGAGTTAAAAAATGAAAACGGTTGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3277468 AATTAAAGCACAAGTCAGAAAATGAAAATGACTAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * * ** *
3277503 GACTAAA-CCCTGAGTGAGAAAATGAAAACCACCAG
1 AATTAAATCAC-GAGTCAAAAAATAAAAATGACTAG
* * * * * ** *
3277538 GATTAAACCACGAATCAGAAAATGAAAGCGA-TCG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3277572 AGATT-AATCGATGAGTTAGAAAATGAAAAATGA-TCG
1 A-ATTAAATC-ACGAGTCAAAAAAT-AAAAATGACTAG
* * * * * *
3277608 AGATTATACCATGAGTCACAAAATGAAAACGACCT-G
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGA-CTAG
* * *
3277644 GATTAAATCACGACTCAACAAATAAAAATGAC-AGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTA-G
* ** * * *
3277679 GATTAAAAAATGTGTC-AAAAATAAAAAAGA-TAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * * * *
3277712 AGATTAAAACACAAGTTAGAAAATGTAAAA-CAATGG
1 A-ATTAAATCACGAGTCAAAAAAT-AAAAATGACTAG
* * * * *
3277748 AGATTAAACCACAAGTCAAAAAGTGAAAATGA-TTG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * * * * *
3277783 AGATTAAACCATGAGTTAGAAAATGAAAACGGCCAA
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * *
3277819 AATTAAA-CAATGAGTCAAAAAATGAAAATGAC-CG
1 AATTAAATC-ACGAGTCAAAAAATAAAAATGACTAG
* *
3277853 ACATTAAATCACGAGTCAAAGAAATAAAAATTA-TCG
1 A-ATTAAATCACGAGTCAAA-AAATAAAAATGACTAG
* * * *
3277889 AAATCAAATCACGAGT-AAGAAAATGAAAATAACCAG
1 -AATTAAATCACGAGTCAA-AAAATAAAAATGACTAG
* * * **
3277925 GATTAAACCACTAGTCAAAAAATGGAAATGACTAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* *
3277960 AATTAAATCATGAATCAAAAAATAAAAATGACATA-
1 AATTAAATCACGAGTCAAAAAATAAAAATGAC-TAG
* ** *
3277995 AATTAAATCACGAGTCTAAATCTGAAAATGACTAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* ** * *
3278030 GATTAAAGT-AATAGTCAGAAAATTAAAATGA-TAAG
1 AATTAAA-TCACGAGTCAAAAAATAAAAATGACT-AG
** * * * * * *
3278065 GGTTAAACCATGAGTTAAACAATGAAAATGA-TTG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3278099 AGATGAAACCACCAGTCAGAAAATGAAAAATGATCAAG
1 A-ATTAAATCACGAGTCAAAAAAT-AAAAATGA-CTAG
* ** **
3278137 -ATTAAATCACGAGTCAAAAAATAAAGACAACGGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3278171 GATTAAACCACAAGTCAAAGAAATAAAAATGACCAG
1 AATTAAATCACGAGTCAAA-AAATAAAAATGACTAG
* * * *
3278207 AATTAAATCATGAGT-AAGAAAATAAAAA-CAATGGG
1 AATTAAATCACGAGTCAA-AAAATAAAAATGACT-AG
* * * * * *
3278242 AATTAAACCATGAGTTAGAAAATGAAAACGAC-AGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTA-G
* ** * * * *
3278277 GATTAAATCATTAGTTAGAAAATAAAAAAGAC-AA
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3278311 AGATTAAACCATGAGTCAGAAAATAAAAACGACCCAG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGA-CTAG
* * * * * *
3278348 -ATTAAATTACAAGTTAGAAAATGAAAACGAC-AGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTA-G
* * * * * * ** *
3278382 GATTAAACCATGGGTCAGAAAATGAAAACAACTGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * * * * *
3278417 GATTACACCATGGGTTAGAAAAT-AAAACGA-TGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * *
3278450 AGATTAAATCACTAGTCAGAAAATGAAAATGA-TCAG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACT-AG
* ** * * *
3278486 TATTAAATCATAAGTTAGAGAAATAAAAATGA-TCAA
1 AATTAAATCACGAGTCA-AAAAATAAAAATGACT-AG
* ** * * *
3278522 AATTAAATCATGAGTCAAAAAACGAAAA-CAATTG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* ** *
3278556 AGATTAAACCACGAGTCAGGAAACAAAAATGA-T--
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * * * *
3278589 AATGAAAATTACCA---AAATTAAATTACAA-GTTCGAA
1 AAT-TAAATCACGAGTCAAA--AAATAAAAATG-ACTAG
* * * * *
3278624 AATGAAAATGACTAGGATTAAAACGCAAGTTAAAAAATGAAAACAACTG
1 AAT-TAAATCACGA-G-TCAAAA---AA--T-AAAAATG---ACTA--G
* * ** * *
3278673 AAATTAAAGCACAAGTCAAAAAACGAAAATGATTGG
1 -AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * * ** *
3278709 GACTAAA-CCCTGAGTGAGAAAATGAAAACCACCAG
1 AATTAAATCAC-GAGTCAAAAAATAAAAATGACTAG
* * * * **
3278744 GATTAAACCACCAGTCAAAAAATGAAAGCGA-TCAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACT-AG
* * ** *
3278779 GATTAAA-CGACAAGTCTAAAAAGGAAAAATGA-TCG
1 AATTAAATC-ACGAGTC-AAAAAATAAAAATGACTAG
* * * *
3278814 AGATTATACCACGAGTTAAAAAATAAAAAAGA-TAAG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACT-AG
* *
3278850 GATTAAA-CAACGTA-TCAAAAAATTAAAATGA-TACG
1 AATTAAATC-ACG-AGTCAAAAAATAAAAATGACTA-G
* * * * * ** **
3278885 GATTAAAGCATGACT-AAAAAATGTAAAACAACGGG
1 AATTAAATCACGAGTCAAAAAAT-AAAAATGACTAG
* * ** * * *
3278920 GATTAAACCATAAGTCAAAAAGTGAAAATGA-TCG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3278954 AGATTAAACCACGAGTCCAAAAATGAAAATGACCAA
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3278990 AATTAAATGATGAATCAAAAAATGAAAATGACTGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * *
3279025 CATTAAATCATGAGCCAAAGAAATTAAAACGACCAG
1 AATTAAATCACGAGTCAAA-AAATAAAAATGACTAG
* * * * * *
3279061 AATCAAATCATGAGTCATAAAATGAAAATGACCAA
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* ** * * * *
3279096 AATTAAACCATTAGTAAAAAAATGAAAACGACTAA
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3279131 AATTAAATAATGAGCCAAAAAATAAAAATGAC-CG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3279165 AAATTAAATAACGAGTCTAAAATTGAAAACA-GCCAAG
1 -AATTAAATCACGAGTCAAAAAAT-AAAA-ATGACTAG
* * * * ** *
3279202 -ATTAAA-CTATGAGTTAGAAAATTAAAACAACTGG
1 AATTAAATC-ACGAGTCAAAAAATAAAAATGACTAG
* * * *
3279236 GACTAAACCACGAGTCAAAAAATGAAAATGACT-G
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * *
3279270 AGATGAAACCACCAGTCAAAAAATGAAAAATGA-TCAG
1 A-ATTAAATCACGAGTCAAAAAAT-AAAAATGACT-AG
* * * * ** **
3279307 GATTAAACCACGAGTCAAAAAATGAAGACAACCGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3279342 GATTAAA-CTACAAGTCATAGAAATAAAAATGACGAA
1 AATTAAATC-ACGAGTCA-AAAAATAAAAATGACTAG
* * * *
3279378 AATTAAGTCACGAGTC-AGAAATGAAAA-CA-TAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
** * * *
3279410 AAATTAACA-CACGAGTCCGAAAATGAAAACGAC-CG
1 -AATTAA-ATCACGAGTCAAAAAATAAAAATGACTAG
* * *
3279445 AGATT-AATCACGAGTCAGAAAAATGAAAA-CAATAG
1 A-ATTAAATCACGAGTCA-AAAAATAAAAATGACTAG
* ** * *
3279480 AAATTAAACCACGAGTC-CGAAATGAAAA-GACCGAG
1 -AATTAAATCACGAGTCAAAAAATAAAAATGA-CTAG
* **
3279515 AATTAAATCACGAGTC-AGAAATAAAAAACAACTAG
1 AATTAAATCACGAGTCAAAAAAT-AAAAATGACTAG
* * *
3279550 -ATTAAACCATGAGTC-AGAAATAAAAATGACCT-G
1 AATTAAATCACGAGTCAAAAAATAAAAATGA-CTAG
* * **
3279583 GATTAAATCACGAGTCAAAAAATTAAAACAACCT-G
1 AATTAAATCACGAGTCAAAAAATAAAAATGA-CTAG
* * * * **
3279618 GATTAAATCACAAGTCAAAAAATGAAAACGACCGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3279653 GATTAAACCATGGGTCAAAAAATGAAAATGACTTAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGAC-TAG
* * * * * * *
3279689 -ATTAAACCATGGGTTAGAAAATGAAAATGA-TCG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * *
3279722 AGATTAAATAATGAGTCAGAAAATGAAAATTA-TCG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3279757 ATATTAAATTACAAGTTAGAGAAATAAAAATGA-TCG
1 A-ATTAAATCACGAGTCA-AAAAATAAAAATGACTAG
* *
3279793 AAATTAAATCACGAGTCAAAAAATGAAAATGA-TCG
1 -AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3279828 AGATCAAATCATGAGTCAAGAAATGAATATGA-T--
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
** * * *
3279861 AATTAAA--ATTA-TC--AGAAT-TAAATTACTAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * *
3279890 TCAA-AAAATGTA--AATGACCAAGATAAAAATG-C--G
1 --AATTAAAT-CACGAGTCA-AAAAATAAAAATGACTAG
* * * * *** * *
3279923 AGTTAAA-AA--A-TGAAAATGATCGGAATTA-AAG
1 AATTAAATCACGAGTCAAAA-AATAAAAATGACTAG
* * * * ** ****
3279954 CA-CAAGTTA-GA-AAATAAAAATAACTGGGACTAG
1 AATTAAATCACGAGTCA-AAAAATAAAAATGACTAG
* * * ** * *
3279987 ACCTTGAGT---GAG---AAAATGAAAAC-CACTAG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3280016 GATTAAACCATGAATCAAAAAATGAAAGCAATCA-T-G
1 AATTAAATCACGAGTCAAAAAAT-AAA--AATGACTAG
* * * * *
3280052 -ATTAAA-CGGCAAGTCAGAAAATGAAAATGA-TCGG
1 AATTAAATC-ACGAGTCAAAAAATAAAAATGACT-AG
* * * *
3280086 GATTATACCATGAGTCAAAAAATAAAAATGAC-AG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
** * *
3280120 AGATTAAA-CAACGCA-TCTGAAAACAAAAAAGAC-AG
1 A-ATTAAATC-ACG-AGTCAAAAAATAAAAATGACTAG
* * * * ** *
3280155 AGATTAAAGC-CAAGTCAGAAAATGTAAAACAACGAG
1 A-ATTAAATCACGAGTCAAAAAAT-AAAAATGACTAG
* * ** * *
3280191 GATTAAACCATAAGTCAAAAAGTGAAAA-GACT-G
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3280224 AGATTAAA-CTA-GAAGTTAGAAAATGAAAATGACCAA
1 A-ATTAAATC-ACG-AGTCAAAAAATAAAAATGACTAG
* * *
3280260 AATTAAATGATGAGTCAAAAAATAAAAATGA-TGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* ** * * *
3280294 CACAAAATCATGAGTTAAAGAATTAAAAATGACTAG
1 AATTAAATCACGAGTCAAA-AAATAAAAATGACTAG
* * * * *
3280330 AATCAAATCACGAGTCAAAAAATGAAAACGGC-CG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
** * * * * *
3280364 AGATTAAGCCACCAATCAAAAAATGAAAATGACCAA
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3280400 AATTAAATCATGAGTCAGAAAATAAAAATGACCAA
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * *
3280435 AATTAAATGATGAGTCTAAAACTAAAAACGATTAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * * * *
3280470 GATTAAATGATGAGTTAGAAAGTTAAAACGA-TAGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTA-G
* * * * *
3280505 GATTAAA-CTATGAGTCAGAAAATGAAAATGA-TTG
1 AATTAAATC-ACGAGTCAAAAAATAAAAATGACTAG
* * *
3280539 AGATGAAA-CACCAGTCAAAAAATGAAAAATGA-TGGG
1 A-ATTAAATCACGAGTCAAAAAAT-AAAAATGACT-AG
* * *
3280575 GATTAAACCACGAGTCAAAAAATGAAGACAATG---GG
1 AATTAAATCACGAGTCAAAAAAT-AA-A-AATGACTAG
* * * * *
3280610 GATTAAAGCACGAGTTAGAGAAATAAAAATGACCAG
1 AATTAAATCACGAGTCA-AAAAATAAAAATGACTAG
* * * * ***
3280646 AATTAAATCATGAGTCAGAAAATGAAAAGGAAGGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * *
3280681 AATTAAACCATGAATC-AAAAATGAAAACGACCAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* **
3280715 GATTAAATCACGAGTCAAAAAATAAAAACAACTAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * *
3280750 GATTAAA-CTATGAGTTAGAAAATAAAAACGACCT-G
1 AATTAAATC-ACGAGTCAAAAAATAAAAATGA-CTAG
* * * * *
3280785 GATTAAATCAAGAGTCAGAAAATGAAAATGACCA-
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * * * * *
3280819 AGATAAAACCATGGGTTAGAATATGAAAATGAC-CG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
** * * * * *
3280854 AGATTAAATCATAAGTTAGAAAATGAAAACGA-TCG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* *
3280889 ATATTAAATCACTAGTCAAAGAAATAAAAATGA-TCAA
1 A-ATTAAATCACGAGTCAAA-AAATAAAAATGACT-AG
* * * *
3280926 AATTAAATCACAAGTCAAAAAACAAAAACGA-TTG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * ** *
3280960 AGATTAAACCATGAGTCAGGAAACGAAAACAATAATGAAAAT
1 A-ATTAAATCACGAGTCA--AAA--AATA-AA-AATGACTAG
* * * * * * * *
3281002 TATTGGAATTA-AATTATGAGTCAAAAATTGAAAATGACCATG
1 AATT-AAATCACGA--GTCA---AAAAA-TAAAAATGACTA-G
** * * *
3281044 -ATTAAAAT-GTGAGTTAAAAAATGAAAACGACT-G
1 AATT-AAATCACGAGTCAAAAAATAAAAATGACTAG
* * *
3281077 AAATTAAAGCACGAGTCAGAAAATGAAAATGACTAG
1 -AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * ** * ** * **
3281113 GACTAAACCTTGAGTGAGGAAATGAAAACCACTAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *** *
3281148 GATTAAACCACGAGTCAAAAAATGAAAGCAATTAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3281183 GATTAAACCATGAGTCAGAAAATGAAAAATGACTAG
1 AATTAAATCACGAGTCAAAAAAT-AAAAATGACTAG
* * * * * * * *
3281219 -ACTATACCATGAGTCAAAAAGTTAAAACGA-TCGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACT-AG
*
3281253 GATTAAATCACGAGTCAAAAAATAAAAATGAC-AGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTA-G
* * *
3281288 GACTAAA-CAACGCA-TCAAAAAATGAAAATGA-TAGG
1 AATTAAATC-ACG-AGTCAAAAAATAAAAATGACTA-G
* ** * * * * *
3281323 GATTAACGCAAGAGTCAAAAAATGTAAAA-CAATGGG
1 AATTAAATCACGAGTCAAAAAAT-AAAAATGACT-AG
* * ** * * *
3281359 CATTAAACCATAAGTCAAAAAGTGAAAATGAC-CG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * *
3281393 AGATTAAACCATGAGTCAAAAAATGAAAATGACTAG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3281429 AATTAAATGACGAGTCGAAAAATGAAAATGATTAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3281464 CATTAAATCACAAGTTAAAGAAATAAAAATGACCAG
1 AATTAAATCACGAGTCAAA-AAATAAAAATGACTAG
* * * * *
3281500 AATCAAATCATGAGTCAGAAAATAAAAACGACTGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * *
3281535 GATTAAACCACTG-GTCAAAAAATGAAAACGATTGG
1 AATTAAATCAC-GAGTCAAAAAATAAAAATGACTAG
* * *
3281570 AATTAACTCACAAGTCAAAAAAT-AAAATGA-TCG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3281603 AAATTAAATCATGAGTCTAAAAATGAAAACGACTA-
1 -AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * *
3281638 AGATTAAA-CGACGCGTCAAAAAATTAAAACGA-TAGG
1 A-ATTAAATC-ACGAGTCAAAAAATAAAAATGACTA-G
* * * *
3281674 TATTAAACCAC-AGGTCAAAAAATGAAAATGA-TCG
1 AATTAAATCACGA-GTCAAAAAATAAAAATGACTAG
* * * * *
3281708 AGATAAAACCACTAGTCAGAAAATGAAAAATGA-TCGG
1 A-ATTAAATCACGAGTCAAAAAAT-AAAAATGACT-AG
* * ** * * ** *
3281745 GATTAAATTATAAGTCAAAAAATGAAGACAACGAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3281780 GATTAAACCACAAGTCAGAGAAATAAAAATGACTAG
1 AATTAAATCACGAGTCA-AAAAATAAAAATGACTAG
* * * *
3281816 AATTAAATCACGAGTTAGAAAATGAAAAGGA-TAGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTA-G
* * * *
3281851 AATTAAACCACGAATCAAAAAATGAAAATGAC-CG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
** * *
3281885 AGATTAAATCAAAAGTCAGAAAATAAAAATGATCAAG
1 A-ATTAAATCACGAGTCAAAAAATAAAAATGA-CTAG
* **
3281922 -ATTAAACCACGAGTCAAAAAATAAAAATGACCGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3281956 GATTAAATCATGAGTCAAAAAATGAAAATGA-TCGG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACT-AG
* * * * * * * * *
3281991 GATTAAACCATGGGTTAGAAAATGAAAACGATTAG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * * * * * *
3282026 AATTAAACCATGGGTTAGAAAATGAAAACGAC-CG
1 AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* * * *
3282060 AAATTAAATCATGAGTCATAAAATGAAAATGATTAG
1 -AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
* **
3282096 TATTAAATCATAAGTCAAAGAAATAAAAATGA
1 AATTAAATCACGAGTCAAA-AAATAAAAATGA
3282128 TCGAAATTAC
Statistics
Matches: 4411, Mismatches: 1199, Indels: 781
0.69 0.19 0.12
Matches are distributed among these distances:
26 4 0.00
27 4 0.00
28 5 0.00
29 32 0.01
30 19 0.00
31 24 0.01
32 34 0.01
33 81 0.02
34 383 0.09
35 2881 0.65
36 766 0.17
37 56 0.01
38 16 0.00
39 8 0.00
40 10 0.00
41 29 0.01
42 11 0.00
43 3 0.00
44 10 0.00
45 1 0.00
47 22 0.00
48 3 0.00
49 6 0.00
50 3 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.19
Consensus pattern (35 bp):
AATTAAATCACGAGTCAAAAAATAAAAATGACTAG
Found at i:3276515 original size:106 final size:103
Alignment explanation
Indices: 3276269--3276711 Score: 371
Period size: 106 Copynumber: 4.2 Consensus size: 103
3276259 AACAATCGGG
* * * * *
3276269 ATTAAACCATGAGTCAAAAAATGAAGACAACGAAGATTAAACCACGAGTCAAAGAAATAAAAATG
1 ATTAAACCACGAGTCAAAAAATGAAAACGACCAAGATTAAACCATGAGTCAAA-AAATAAAAA--
** * * * *
3276334 ACTA-CAATTAAATCACGAGTTAGAAAATAAAAATTGA-TGGGA
63 ACTAGGGATTAAACCATGAGTAAAAAAATAAAAA-TGACT--GA
* * * * * *
3276376 ATTTAAATCACGAGTCAAAAAAAGAAAATGACCAGGATTAAATCATGAGTTAAAAAATAAAAAAC
1 A-TTAAACCACGAGTCAAAAAATGAAAACGACCAAGATTAAACCATGAGTCAAAAAATAAAAAAC
3276441 TAAGGGATTAAACCATGAGTCAAAAAAATAAAAATGACCTGA
65 T-AGGGATTAAACCATGAGT-AAAAAAATAAAAATGA-CTGA
* * * *
3276483 ATTAAATCATGAGTCAAAAAATGAAAACGACCAAGATTAAACCATGGGTCAGAAAATGAAAACAA
1 ATTAAACCACGAGTCAAAAAATGAAAACGACCAAGATTAAACCATGAGTCAAAAAAT-AAAA-AA
* * *
3276548 CT-GAGATTAAACCAT-AGGTTAGAAAATGAAAAATGACTGA
64 CTAGGGATTAAACCATGA-GTAAAAAAAT-AAAAATGACTGA
* * *
3276588 GATTATACCACGAGTCAAAAAATGAAAATGACCAAGATTAAATCATGAGT-AAAAAA-AAAAAAC
1 -ATTAAACCACGAGTCAAAAAATGAAAACGACCAAGATTAAACCATGAGTCAAAAAATAAAAAAC
* * * * * *
3276651 -AGGGATTAAACAATGTGTCAAAAAATGAAAACGA-TAGGG
65 TAGGGATTAAACCATGAGTAAAAAAATAAAAATGACT--GA
*
3276690 ATTAAAGCACGAGTCAAAAAAT
1 ATTAAACCACGAGTCAAAAAAT
3276712 ATTAAACAAC
Statistics
Matches: 276, Mismatches: 45, Indels: 36
0.77 0.13 0.10
Matches are distributed among these distances:
100 1 0.00
101 26 0.09
102 23 0.08
103 4 0.01
105 19 0.07
106 114 0.41
107 32 0.12
108 56 0.20
109 1 0.00
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (103 bp):
ATTAAACCACGAGTCAAAAAATGAAAACGACCAAGATTAAACCATGAGTCAAAAAATAAAAAACT
AGGGATTAAACCATGAGTAAAAAAATAAAAATGACTGA
Found at i:3277525 original size:187 final size:187
Alignment explanation
Indices: 3277223--3277564 Score: 424
Period size: 187 Copynumber: 1.8 Consensus size: 187
3277213 TTAAACCACC
* * * * *
3277223 AGTCAAAAAATGAAAATGATTAAGATTAAATATGAGTCAGAAAATGAAAACAATAGGTATTAAAT
1 AGTCAAAAAATGAAAATGATCAAGATTAAACATGAGTCAAAAAATGAAAACAATAGGAATTAAAG
* * * *
3277288 CACATGTCAGAGAAATAAAAATGATCAAAATTAAATCACGAGTTAGAAAATGAAAACAATC-GAG
66 CACAAGTCAGAGAAATAAAAATGATCAAAACTAAATCACGAGTGAGAAAATGAAAACAACCAG-G
3277352 ATTAAACCAC-AAGTCAGAAAAGGAAAATGATAATGAAAATTACCATAATTAAATTATG
130 ATTAAACCACGAA-TCAGAAAAGGAAAATGATAATGAAAATTACCATAATTAAATTATG
* * ** *
3277410 AGTCAAAAAATGAAAATGATCAGGATTAAAACATGAGTTAAAAAATGAAAACGGTTGGAATTAAA
1 AGTCAAAAAATGAAAATGATCAAGATT-AAACATGAGTCAAAAAATGAAAACAATAGGAATTAAA
* ** * *
3277475 GCACAAGTCAGA-AAATGAAAATGA-CTAGGACTAAA-CCCTGAGTGAGAAAATGAAAACCACCA
65 GCACAAGTCAGAGAAATAAAAATGATC-AAAACTAAATCAC-GAGTGAGAAAATGAAAACAACCA
*
3277537 GGATTAAACCACGAATCAGAAAATGAAA
128 GGATTAAACCACGAATCAGAAAAGGAAA
3277565 GCGATCGAGA
Statistics
Matches: 130, Mismatches: 20, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
186 3 0.02
187 84 0.65
188 43 0.33
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.20
Consensus pattern (187 bp):
AGTCAAAAAATGAAAATGATCAAGATTAAACATGAGTCAAAAAATGAAAACAATAGGAATTAAAG
CACAAGTCAGAGAAATAAAAATGATCAAAACTAAATCACGAGTGAGAAAATGAAAACAACCAGGA
TTAAACCACGAATCAGAAAAGGAAAATGATAATGAAAATTACCATAATTAAATTATG
Found at i:3277910 original size:106 final size:105
Alignment explanation
Indices: 3277795--3277988 Score: 248
Period size: 106 Copynumber: 1.8 Consensus size: 105
3277785 ATTAAACCAT
* ** *
3277795 GAGTTAGAAAATGAAAACGGCCAAAATTAAA-CAATGAGTCAAAAAATGAAAATGAC-CGACATT
1 GAGTAAGAAAATGAAAACAACCAAAATTAAACCAAT-AGTCAAAAAATGAAAATGACTAGA-ATT
*
3277858 AAATCACGAGTCAAAGAAATAAAAATTATCGAAATCAAATCAC
64 AAATCACGAATCAAA-AAATAAAAATTATCGAAATCAAATCAC
* ** * *
3277901 GAGTAAGAAAATGAAAATAACCAGGATTAAACCACTAGTCAAAAAATGGAAATGACTAGAATTAA
1 GAGTAAGAAAATGAAAACAACCAAAATTAAACCAATAGTCAAAAAATGAAAATGACTAGAATTAA
*
3277966 ATCATGAATCAAAAAATAAAAAT
66 ATCACGAATCAAAAAATAAAAAT
3277989 GACATAAATT
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
105 10 0.13
106 60 0.80
107 5 0.07
ACGTcount: A:0.55, C:0.12, G:0.14, T:0.19
Consensus pattern (105 bp):
GAGTAAGAAAATGAAAACAACCAAAATTAAACCAATAGTCAAAAAATGAAAATGACTAGAATTAA
ATCACGAATCAAAAAATAAAAATTATCGAAATCAAATCAC
Found at i:3277980 original size:281 final size:281
Alignment explanation
Indices: 3277398--3277987 Score: 602
Period size: 281 Copynumber: 2.1 Consensus size: 281
3277388 AAATTACCAT
* * * **
3277398 AATTAAATTATGAGTCAAAAAATGAAAATGATCAGGATTAAAACATGAGTTAAAAAATGAAAACG
1 AATTAAATAATGAGTCAAAAAATAAAAAAGATCAGGATTAAAACACAAGTTAAAAAATGAAAACG
** * *
3277463 GTTGGAATTAAAGCACAAGTCAGAAAATGAAAATGACTAGGACTAAACCCTGAGTGAGAAAATGA
66 AATGGAATTAAACCACAAGTCAGAAAATGAAAATGACTAGGACTAAACCATGAGTGAGAAAATGA
** * * * * * * * *
3277528 AAACCACCAGGATTAAACCACGAATCAGAAAATGAAAGCGATCGAGATTAATCGATGAGTTAGAA
131 AAACCACCAAAATTAAACAACGAATCAAAAAATGAAAACGACCGACATTAATCGACGAGTCAAAA
* * * * * * * *
3277593 AATGAAAAATGATCGAGATTATACCATGAGTCACAAAATGAAAACGACCTGGATTAAATCACGAC
196 AATGAAAAATGATCGAAATCAAACCACGAGTAACAAAATGAAAACAACCAGGATTAAACCACGAC
*
3277658 TCAACAAATAAAAATGACAGG
261 TCAAAAAATAAAAATGACAGG
* * * *
3277679 GATTAAAAAATGTGTC-AAAAATAAAAAAGAT-AGAGATTAAAACACAAGTTAGAAAATGTAAAA
1 AATTAAATAATGAGTCAAAAAATAAAAAAGATCAG-GATTAAAACACAAGTTAAAAAATG-AAAA
* * *
3277742 C-AATGGAGATTAAACCACAAGTCA-AAAAGTGAAAATGA-TTGAGATTAAACCATGAGTTAGAA
64 CGAATGGA-ATTAAACCACAAGTCAGAAAA-TGAAAATGACTAG-GACTAAACCATGAGTGAGAA
** * * *
3277804 AATGAAAACGGCCAAAATTAAACAATGAGTCAAAAAATGAAAATGACCGACATTAAATC-ACGAG
126 AATGAAAACCACCAAAATTAAACAACGAATCAAAAAATGAAAACGACCGACATT-AATCGACGAG
* * * *
3277868 TCAAAGAAAT-AAAAATTATCGAAATCAAATCACGAGTAAGAAAATGAAAATAACCAGGATTAAA
190 TCAAA-AAATGAAAAATGATCGAAATCAAACCACGAGTAACAAAATGAAAACAACCAGGATTAAA
* * **
3277932 CCACTAGTCAAAAAATGGAAATGACTA-G
254 CCACGACTCAAAAAATAAAAATGAC-AGG
* *
3277960 AATTAAATCATGAATCAAAAAATAAAAA
1 AATTAAATAATGAGTCAAAAAATAAAAA
3277988 TGACATAAAT
Statistics
Matches: 247, Mismatches: 53, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
279 2 0.01
280 44 0.18
281 181 0.73
282 20 0.08
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.19
Consensus pattern (281 bp):
AATTAAATAATGAGTCAAAAAATAAAAAAGATCAGGATTAAAACACAAGTTAAAAAATGAAAACG
AATGGAATTAAACCACAAGTCAGAAAATGAAAATGACTAGGACTAAACCATGAGTGAGAAAATGA
AAACCACCAAAATTAAACAACGAATCAAAAAATGAAAACGACCGACATTAATCGACGAGTCAAAA
AATGAAAAATGATCGAAATCAAACCACGAGTAACAAAATGAAAACAACCAGGATTAAACCACGAC
TCAAAAAATAAAAATGACAGG
Found at i:3278995 original size:70 final size:69
Alignment explanation
Indices: 3278622--3291188 Score: 1160
Period size: 70 Copynumber: 178.2 Consensus size: 69
3278612 TACAAGTTCG
* * * ** * * *
3278622 AAAATGAAAATGACTAGGATTAAAACGCA--AGTTAAAAAATGAAAACAACTGAAATTAAAGCAC
1 AAAATGAAAATGACCAAGATT-AAAC-CATGAG-TCAAAAATGAAAATGACCGAGATTAAATCAC
*
3278685 AAGTCAA
63 GAGTCAA
* **** * * * ** * *
3278692 AAAACGAAAATGATTGGGACTAAACCCTGAGTGAGAAAATGAAAACCACC-AGGATTAAACCACC
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGA-GATTAAATCACG
3278756 AGTCAA
64 AGTCAA
** * * * ** * * * *
3278762 AAAATGAAAGCGATCAGGATTAAACGACAAGTCTAAAAAGGAAAAATGATCGAGATTATACCACG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATG-AAAATGACCGAGATTAAATCACG
*
3278827 AGTTAA
64 AGTCAA
* * * * * * * *
3278833 AAAATAAAAAAGA-TAAGGATTAAACAACGTA-TCAAAAAATTAAAATGATACG-GATTAAAGCA
1 AAAATGAAAATGACCAA-GATTAAACCATG-AGTC-AAAAATGAAAATGA-CCGAGATTAAATCA
* *
3278895 TGACT-AA
62 CGAGTCAA
** *** * * *
3278902 AAAATGTAAAACAACGGGGATTAAACCATAAGTCAAAAAGTGAAAATGATCGAGATTAAACCACG
1 AAAATG-AAAATGACCAAGATTAAACCATGAGTCAAAAA-TGAAAATGACCGAGATTAAATCACG
*
3278967 AGTCCA
64 AGTCAA
* ** * * *
3278973 AAAATGAAAATGACCAAAATTAAATGATGAATCAAAAAATGAAAATGACTG-GCATTAAATCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAG-ATTAAATCACG
*
3279037 AGCCAA
64 AGTCAA
* * * * * * * *
3279043 AGAAATTAAAACGACC-AGAATCAAATCATGAGTCATAAAATGAAAATGACCAAAATTAAACCAT
1 A-AAATGAAAATGACCAAG-ATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCAC
* *
3279107 TAGTAAA
63 GAGTCAA
* * * ** * * * *
3279114 AAAATGAAAACGACTAAAATTAAATAATGAGCCAAAAAATAAAAATGACCGAAATTAAATAACGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCACGA
*
3279179 GTCTA
65 GTCAA
* * * * * ** * * * *
3279184 AAATTGAAAA-CAGCCAAGATTAAACTATGAGTTAGAAAATTAAAACAACTGGGACTAAACCACG
1 AAAATGAAAATGA-CCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACG
3279248 AGTCAA
64 AGTCAA
** * ** * *
3279254 AAAATGAAAATGACTGAGATGAAACCACCAGTCAAAAAATGAAAAATGATC-AGGATTAAACCAC
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATG-AAAATGACCGA-GATTAAATCAC
3279318 GAGTCAA
63 GAGTCAA
* ** ** * ** * * *
3279325 AAAATGAAGACAACCGGGATTAAACTACAAGTCATAGAAATAAAAATGA-CGAAAATTAAGTCAC
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-A-AAATGAAAATGACCG-AGATTAAATCAC
3279389 GAGTC-A
63 GAGTCAA
* * * * *
3279395 GAAATGAAAACAT-A-GAA-ATT-AACACACGAGTCCGAAAATGAAAACGACCGAGATT-AATCA
1 AAAATG-AAA-ATGACCAAGATTAAAC-CATGAGT-CAAAAATGAAAATGACCGAGATTAAATCA
3279455 CGAGTCAGA
62 CGAGTCA-A
* ** * * **
3279464 AAAATGAAAA-CAATAGAAATTAAACCACGAGTCCGAAATGAAAA-GACCGAGAATTAAATCACG
1 AAAATGAAAATGACCA-AGATTAAACCATGAGTCAAAAATGAAAATGACCGAG-ATTAAATCACG
3279527 AGTC-A
64 AGTCAA
* * ** * * * *
3279532 GAAATAAAAAACAACTAGATTAAACCATGAGTCAGAAATAAAAATGACCTG-GATTAAATCACGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCAAAAATGAAAATGACC-GAGATTAAATCACGA
3279596 GTCAA
65 GTCAA
* ** ** * ** * * * * *
3279601 AAAATTAAAACAACCTGGATTAAATCACAAGTCAAAAAATGAAAACGACCGGGATTAAACCATGG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCACGA
3279666 GTCAA
65 GTCAA
** * * * * *
3279671 AAAATGAAAATGACTTAGATTAAACCATGGGTTAGAAAATGAAAATGATCGAGATTAAATAATGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACGA
*
3279736 GTCAG
65 GTCAA
* * * * ** ** * * * *
3279741 AAAATGAAAATTATCGATATTAAATTACAAGTTAGAGAAATAAAAATGATCGAAATTAAATCACG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-A-AAATGAAAATGACCGAGATTAAATCACG
3279806 AGTCAA
64 AGTCAA
* * * * * * *
3279812 AAAATGAAAATGATCGAGATCAAATCATGAGTCAAGAAATGAATATGA--TA-ATTAAAATTATC
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCAA-AAATGAAAATGACCGAGATT-AAATCA-C
* *
3279874 AGAATTAAATTA
63 -G-AGT-CA--A
* * * * *
3279886 CTAGTCAAAAAATGTAAATGACCAAGA-TAAA-AATGCGAGTTAAAAAATGAAAATGATCG-GAA
1 --A---AAAT---GAAAATGACCAAGATTAAACCAT--GAG-TCAAAAATGAAAATGACCGAG-A
* * * *
3279948 TTAAAGCACAAGTTAG
54 TTAAATCACGAGTCAA
* * *** * * * * ** * * *
3279964 AAAATAAAAATAACTGGGACTAGACCTTGAGTGAGAAAATGAAAACCA-CTAGGATTAAACCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGA-GATTAAATCACG
*
3280028 AATCAA
64 AGTCAA
*** * * * * * * *
3280034 AAAATGAAAGCAATCATGATTAAACGGCA--AGTCAGAAAATGAAAATGATCGGGATTATACCAT
1 AAAATGAAAATGACCAAGATTAAAC--CATGAGTCA-AAAATGAAAATGACCGAGATTAAATCAC
3280097 GAGTCAA
63 GAGTCAA
* * * * ** * * *
3280104 AAAATAAAAATGA-CAGAGATTAAACAACGCA-TCTGAAAACAAAAAAGACAGAGATTAAAGC-C
1 AAAATGAAAATGACCA-AGATTAAACCATG-AGTC-AAAAATGAAAATGACCGAGATTAAATCAC
* *
3280166 AAGTCAG
63 GAGTCAA
** * * * *
3280173 AAAATGTAAAACAACGAGGATTAAACCATAAGTCAAAAAGTGAAAA-GACTGAGATTAAA-CTA-
1 AAAATG-AAAATGACCAAGATTAAACCATGAGTCAAAAA-TGAAAATGACCGAGATTAAATC-AC
* *
3280235 GAAGTTAG
63 G-AGTCAA
* ** * * ** *
3280243 AAAATGAAAATGACCAAAATTAAATGATGAGTCAAAAAATAAAAATGA-TG-GCACAAAATCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAG-ATTAAATCACG
*
3280306 AGTTAA
64 AGTCAA
* * * * * * * * **
3280312 AGAATTAAAAATGA-CTAGAATCAAATCACGAGTCAAAAAATGAAAACGGCCGAGATTAAGCCAC
1 A-AAATGAAAATGACCAAG-ATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCAC
* *
3280376 CAATCAA
63 GAGTCAA
* * * * * * *
3280383 AAAATGAAAATGACCAAAATTAAATCATGAGTCAGAAAATAAAAATGACCAAAATTAAATGATGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACGA
*
3280448 GTCTA
65 GTCAA
* * * ** * ** * * * * ** * *
3280453 AAACTAAAAACGATTAGGATTAAATGATGAGTTAGAAAGTTAAAACGATAGGGATTAAA-CTATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATC-ACG
*
3280517 AGTCAG
64 AGTCAA
*** * ** ** * *
3280523 AAAATGAAAATGATTGAGATGAAA-CACCAGTCAAAAAATGAAAAATGATGGGGATTAAACCACG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATG-AAAATGACCGAGATTAAATCACG
3280587 AGTCAA
64 AGTCAA
* ** **** * * * * *
3280593 AAAATGAAGACAATGGGGATTAAAGCACGAGTTAGAGAAATAAAAATGACC-AGAATTAAATCAT
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-A-AAATGAAAATGACCGAG-ATTAAATCAC
*
3280657 GAGTCAG
63 GAGTCAA
* * * *
3280664 AAAATGAAAAGGA--AGGGAATTAAACCATGAATCAAAAATGAAAACGACC-AGGATTAAATCAC
1 AAAATGAAAATGACCA-AG-ATTAAACCATGAGTCAAAAATGAAAATGACCGA-GATTAAATCAC
3280726 GAGTCAA
63 GAGTCAA
* ** * * * * * * *
3280733 AAAATAAAAACAACTAGGATTAAACTATGAGTTAGAAAATAAAAACGACCTG-GATTAAATCAAG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACC-GAGATTAAATCACG
*
3280797 AGTCAG
64 AGTCAA
* * * * **
3280803 AAAATGAAAATGACCAAGATAAAACCATGGGTTAGAATATGAAAATGACCGAGATTAAATCATAA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACGA
* *
3280868 GTTAG
65 GTCAA
* * * * * * * * *
3280873 AAAATGAAAACGATCGATATTAAATCACT-AGTCAAAGAAATAAAAATGATCAAAATTAAATCAC
1 AAAATGAAAATGACCAAGATTAAACCA-TGAGTC-AA-AAATGAAAATGACCGAGATTAAATCAC
*
3280937 AAGTCAA
63 GAGTCAA
** * *** * **
3280944 AAAACAAAAACGATTGAGATTAAACCATGAGTCAGGAAACGAAAACAATAATGAAAATTATTG-G
1 AAAATGAAAATGACCAAGATTAAACCATGAGT-------C----A-AA-AATGAAAATGACCGAG
* *
3281008 AATTAAATTATGAGTCAA
53 -ATTAAATCACGAGTCAA
* * *** * * * * *
3281026 AAATTGAAAATGACCATGATTAAAATGTGAGTTAAAAAATGAAAACGACTGAAATTAAAGCACGA
1 AAAATGAAAATGACCAAGATTAAACCATGAG-TCAAAAATGAAAATGACCGAGATTAAATCACGA
*
3281091 GTCAG
65 GTCAA
* * * * * * ** * *
3281096 AAAATGAAAATGACTAGGACTAAACCTTGAGTGAGGAAATGAAAACCA-CTAGGATTAAACCACG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGA-GATTAAATCACG
3281160 AGTCAA
64 AGTCAA
*** ** * * * * * *
3281166 AAAATGAAAGCAATTAGGATTAAACCATGAGTCAGAAAATGAAAAATGA-CTAGACTATACCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATG-AAAATGACCGAGATTAAATCACG
3281230 AGTCAA
64 AGTCAA
* * * * ** * * * * * *
3281236 AAAGTTAAAACGATCGGGATTAAATCACGAGTCAAAAAATAAAAATGACAGGGACTAAA-CAACG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATC-ACG
3281300 CA-TCAA
64 -AGTCAA
* * * * ** * *
3281306 AAAATGAAAATGA-TAGGGATT-AACGCAAGAGTCAAAAAATGTAAAA-CAATGGGCATTAAACC
1 AAAATGAAAATGACCA-AGATTAAAC-CATGAGTC-AAAAATG-AAAATGACCGAG-ATTAAATC
**
3281368 ATAAGTCAA
61 ACGAGTCAA
* * * *
3281377 AAAGTGAAAATGACCGAGATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGAATTAAATGACG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAG-ATTAAATCACG
*
3281441 AGTCGA
64 AGTCAA
** * ** * * *
3281447 AAAATGAAAATGA-TTAGCATTAAATCACAAGTTAAAGAAATAAAAATGACC-AGAATCAAATCA
1 AAAATGAAAATGACCAAG-ATTAAACCATGAG-TCAA-AAATGAAAATGACCGAG-ATTAAATCA
* *
3281510 TGAGTCAG
62 CGAGTCAA
* * *** * ** *
3281518 AAAATAAAAACGACTGGGATTAAACCACTG-GTCAAAAAATGAAAACGATTG-GAATTAACTCAC
1 AAAATGAAAATGACCAAGATTAAACCA-TGAGTC-AAAAATGAAAATGACCGAG-ATTAAATCAC
*
3281581 AAGTCAA
63 GAGTCAA
* * * **
3281588 AAAAT-AAAATGATCGAA-ATTAAATCATGAGTCTAAAAATGAAAACGACTAAGATTAAA-CGAC
1 AAAATGAAAATGA-CCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATC-AC
*
3281650 GCGTCAA
63 GAGTCAA
* * * * * * * *
3281657 AAAATTAAAACGA-TAGGTATTAAACCA-CAGGTCAAAAAATGAAAATGATCGAGATAAAACCAC
1 AAAATGAAAATGACCAAG-ATTAAACCATGA-GTC-AAAAATGAAAATGACCGAGATTAAATCAC
* *
3281720 TAGTCAG
63 GAGTCAA
* ** ** * * * * *
3281727 AAAATGAAAAATGATCGGGATTAAATTATAAGTCAAAAAATGAAGA-CAACGAGGATTAAACCAC
1 AAAATG-AAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGA-GATTAAATCAC
*
3281791 AAGTCAGA
63 GAGTCA-A
* * * * * * * ** *
3281799 GAAATAAAAATGA-CTAGAATTAAATCACGAGTTAGAAAATGAAAAGGATAG-GAATTAAACCAC
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTCA-AAAATGAAAATGACCGAG-ATTAAATCAC
*
3281862 GAATCAA
63 GAGTCAA
* * ** * * * *
3281869 AAAATGAAAATGACCGAGATTAAATCAAAAGTCAGAAAATAAAAATGATCAAGATTAAACCACGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACGA
3281934 GTCAA
65 GTCAA
* ** * * * * * *
3281939 AAAATAAAAATGACCGGGATTAAATCATGAGTCAAAAAATGAAAATGATCGGGATTAAACCATGG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCACGA
* *
3282004 GTTAG
65 GTCAA
* ** * * * * *
3282009 AAAATGAAAACGA-TTAGAATTAAACCATGGGTTAGAAAATGAAAACGACCGAAATTAAATCATG
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACG
*
3282073 AGTCAT
64 AGTCAA
** * * * * * * *
3282079 AAAATGAAAATGA-TTAGTATTAAATCATAAGTCAAAGAAATAAAAATGATCGAAATTACATCAT
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTC-AA-AAATGAAAATGACCGAGATTAAATCAC
*
3282143 GAGTCAG
63 GAGTCAA
* * * * * * * * *
3282150 AAATTGGAAACGATCGAGATGAAACCATGAGTCAAGAAAAGAAAACGAGAATGAAAATTATCGAA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC----------AA--A-AATGAAAATGACCGAG
*
3282215 ATTAAATTACGAGT---
53 ATTAAATCACGAGTCAA
* * * *
3282229 AAAA--AAAATGACCTAGATTAAAACATGAGTTAAAAAATGAAAATGACC-AGAATTAAAGT-AT
1 AAAATGAAAATGACCAAGATTAAACCATGAG-TCAAAAATGAAAATGACCGAG-ATTAAA-TCAC
3282290 GA-TCAA
63 GAGTCAA
* *** * * * ** ** * *
3282296 AAAATGAAAATAACTGGGACTAAACCCTGAGTGAGAAAATGAAAACCA-TTAGGATTAAACCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGA-GATTAAATCACG
3282360 AGTCAA
64 AGTCAA
* ** * ** *** * * * * *
3282366 AAAATTAAAACAATCGGGATTAAGTGATGAGTCAAAAAATGAAAAATGACTGGGATTATACCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATG-AAAATGACCGAGATTAAATCACG
3282431 AGTCAA
64 AGTCAA
* * ** * * * * *
3282437 AAAATGAAAATGACCAGGGTTGTATCACGAGTCAAAAAATAAAAATGACAGGGATTAAA-CAAC-
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATC-ACG
* * *
3282500 ACATTAG
64 A-GTCAA
* ** * * * * *
3282507 AAAATGAAAATGA-CAGGGATTAAAGGATGAGTCAAAAAAATGTAAAA-CAACAAGGATTACACC
1 AAAATGAAAATGACCA-AGATTAAACCATGAGTC--AAAAATG-AAAATGACCGA-GATTAAATC
*
3282570 ACAAGTCAA
61 ACGAGTCAA
** ** * *
3282579 AAAAGTGAAAATGACCGTGATTAAACCACAAGTCAGAAAATGAAAATGACC-AGTATCAAATCAT
1 AAAA-TGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAG-ATTAAATCAC
3282643 GAGTCAA
63 GAGTCAA
* ** * * * * * * **
3282650 AGAAATAAAAACAACCGAA-ATCAAATCACGAGTCAAAAAATGAAAATGACTGGGATTAAACCTT
1 A-AAATGAAAATGACC-AAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCAC
*
3282714 TAGTCAA
63 GAGTCAA
* * * * * *
3282721 AAAATGAAAATGATC-AGAATTAAATCATAAGTTAGAAAAT-AAAATGACCGAAATTAAATCATG
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACG
**
3282784 AGTTTA
64 AGTCAA
* * * * * *
3282790 AAATTGAAAATGATCGAGATTAAACCACGAGTCAGAAAATTAAAACGACTGAAAATGACCAAAAT
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC--------AAAA--A-TGAAAATGACCGAGAT
** * *
3282855 TAAATCATAAGTTAG
55 TAAATCACGAGTCAA
* * * * * *
3282870 AAAAT-AAAATGACCAAAATTAAATCATGAGTTTAAAATTGAAAATGATCGAGATTAAACCACGA
1 AAAATGAAAATGACCAAGATTAAACCATGAG-TCAAAAATGAAAATGACCGAGATTAAATCACGA
*
3282934 GTCAG
65 GTCAA
* *
3282939 AAAATTAAAATGA-CAAGGATTAAA-CACT-AGTCAAAAATGAAAAAATGAACC-AGGATTAAAC
1 AAAATGAAAATGACCAA-GATTAAACCA-TGAGTCAAAAATG--AAAATG-ACCGA-GATTAAAT
* *
3283000 CAC-AATTAGA
60 CACGAGTCA-A
* * * * * * * * *
3283010 ACAATGAAGAA--A-CAGGGATT-AACCACGAGTTGGGAGAAATAAAAATCACCAAAAATTAAAT
1 AAAATGAA-AATGACCA-AGATTAAACCATGAG-T--CAAAAATGAAAATGACC-GAGATTAAAT
* **
3283071 CACAAGTCGT
60 CACGAGTCAA
* ** * * * *
3283081 CAAA-GAAAAGGTTG-GTAA-TTTAAACCCATGAGTCAAAAAATGAAAACGATCGAGATTTAACT
1 AAAATGAAAA---TGACCAAGATTAAA-CCATGAGTC-AAAAATGAAAATGACCGAGA-TTAAAT
3283143 CACGGAGTCAA
60 CAC-GAGTCAA
* ** * * **
3283154 AAAGATAAAAACAACCAA-AGTTAAATCATTAAGTCAGAAAAATG-AAATGA-C-AGGGTATAA-
1 AAA-ATGAAAATGACCAAGA-TTAAACCA-TGAGTC--AAAAATGAAAATGACCGAGATTA-AAT
*
3283214 CATCGGGTC-A
60 CA-CGAGTCAA
* * * * **
3283224 AAAATGAAAA-CATTCGAGATTAAATCA-GAGTGCAGAAAATAGAAAATGATTCAAAGATTAAAA
1 AAAATGAAAATGA-CCAAGATTAAACCATGAGT-CA-AAAAT-GAAAATGA--CCGAGATT-AAA
* *
3283287 CCATGAGTGCAA
59 TCACGAGT-CAA
* ** ** ** * * *
3283299 TAAATGAAAACAAAATGAAAATTATTGGACTTAAATTACAAGTCAGCAAATGAAAATGACTGGGA
1 AAAATG-----AAAATGACCA--A---GA-TTAAACCATGAGTCA-AAAATGAAAATGACCGAGA
* * * *
3283364 GTAAAACATGAGTTAA
54 TTAAATCACGAGTCAA
* * * * * ** * * *
3283380 AAAATTAAAACGA-CTAGAATTAAAGCATGAGTCAGAAAATGAAAACGATTGGGACTAAA-CCCA
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCAC-
* *
3283443 GAGTGAG
63 GAGTCAA
** * * ** ** ** * *
3283450 AAAATGAAAACCACTAGGATTAAACCACAAGTCAGAAAATGAAAGCGATTGAGATTAAATGATGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACGA
3283515 GTCAA
65 GTCAA
* * * * * *
3283520 AAAATGAAAAACGACCAATATTATACCATGAGTCAAAAAATAAAAACT-ATCGAGA-GAAA--AC
1 AAAATG-AAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAA-TGACCGAGATTAAATCAC
*
3283581 -AAT--A
63 GAGTCAA
*** * * ** * ** * * *
3283585 GGGAT-TAAA-G-CACAAG-TCAAAAAAT--GTAAAACAAT-AGGGATTACGCCACGAGTCAAA-
1 AAAATGAAAATGAC-CAAGATTAAACCATGAGTCAAA-AATGA-AAATGAC-CGA-GA-TTAAAT
*
3283642 -A--AGTGAA
60 CACGAGTCAA
* * * * ** ** * *
3283649 AATGACT-AAGATTAAACCACA-AGTCAAAAAATGA---AAACAACCAAAATTAAACGACGAGTT
1 AA--AATGAA-AAT-GACCA-AGA-TTAAACCATGAGTCAAA-AATGAAAA-TGACCGA-GA-TT
* *
3283709 AAA--A--AAT--G
56 AAATCACGAGTCAA
* ** * * * *
3283717 AAAATG--ATTGA-C---ATTAAGTCACGAGTCAATGAAAT-AACAATGGCC-ATAGTCAAATCA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCAA--AAATGAA-AATGACCGAGA-TTAAATCA
*
3283774 TGAGTCAA
62 CGAGTCAA
** * * * *
3283782 AAAATGAAAATGGTCAGGATTAAACCACT-AGTCAAAAAATGAAAATGATC-AAATTAAATCATG
1 AAAATGAAAATGACCAAGATTAAACCA-TGAGTC-AAAAATGAAAATGACCGAGATTAAATCACG
**
3283845 AGTTGA
64 AGTCAA
* * * * * * *
3283851 AAAAT-AATAATTATCGAA-ATTAAATCATGAGTCTAAAACTGAAAATTA-CTAGGATTAAACCA
1 AAAATGAA-AATGA-CCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGA-GATTAAATCA
* * *
3283913 TGAGTTAG
62 CGAGTCAA
** *** * ** * * *
3283921 AAAATGAAAACAATTGAGATGAAACCACT-AGTCAAAAAATGAAAAACAATCAAGATTAAACCAC
1 AAAATGAAAATGACCAAGATTAAACCA-TGAGTC-AAAAATG-AAAATGACCGAGATTAAATCAC
*
3283985 TAGTCAA
63 GAGTCAA
* ** *** * * * * * *
3283992 AAAATGAAGACAACGGGGATTAAAACCTTGAGTTAGAGAAATAAAAATGACCAAAATTAAATCAT
1 AAAATGAAAATGACCAAGATT-AAACCATGAGTCA-A-AAATGAAAATGACCGAGATTAAATCAC
* *
3284057 GAGTTAG
63 GAGTCAA
* *** ** * * *
3284064 AATATGAAAATGA-TGGGAATTAAACCATGAGTTTGAAAATGAAAACGACCAAGATTAAATCATG
1 AAAATGAAAATGACCAAG-ATTAAACCATGAG-TCAAAAATGAAAATGACCGAGATTAAATCACG
3284128 A-TCAA
64 AGTCAA
* * * * * *
3284133 AAAATAAAAATGTCTAGGATTAAA-CATGAGTCAAAAAATAAAAATGACTTG-GATTAAATCACG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGAC-CGAGATTAAATCACG
*
3284196 AGTCAG
64 AGTCAA
* ** * * * * **
3284202 AAAATGAAAACT-A-CTAGATTAAATAAT-AGGTCAAAAAATGAAAACGATCGGGATTAAACCTT
1 AAAATGAAAA-TGACCAAGATTAAACCATGA-GTC-AAAAATGAAAATGACCGAGATTAAATCAC
* * *
3284264 GGGTTAG
63 GAGTCAA
** * * * * * * * * *
3284271 AAAATGAAAGCGACTAAGATTAAATCACGACTTAGAAAATGAAAACGATC-AGTTTTAAATCACA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAG-ATTAAATCACG
*
3284335 ACTCAGA
64 AGTCA-A
* * ** ** * ** *** * *
3284342 GAAATAAAAACAATTGAA-ATTAAATCACAAGTCAAAAAATGAAAAATGTTTGAGATTAAACCAT
1 AAAATGAAAATGA-CCAAGATTAAACCATGAGTC-AAAAATG-AAAATGACCGAGATTAAATCAC
* *
3284406 GAGTTAG
63 GAGTCAA
* * * * * *** * **
3284413 GAAATGAAAATGA--TA-ATGAAA--ATTA-TC-AAAATTAAATTATGAGTTAGA--AAATGAAA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCAAAAATGAAA--ATGACCGAGATTAAATCACG
3284469 ATGATC--
64 A-G-TCAA
* * * * * * * *
3284475 AAGATTAAAA--ATCGAG-TTAAA--A--AAT-GAAAATG--ACTG---GA-ATT-AATGCATGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCAAAAATGAAAATGACCGAGATTAAAT-CACGA
*
3284525 GTCAG
65 GTCAA
* * * * * ** ** *
3284530 AAAATGAAAACGACTAGGACTAAACCTTGAGAAAGAAAATGAAAACCACC-AGGATTAAACCACG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGA-GATTAAATCACG
* *
3284594 AGTTAG
64 AGTCAA
* * * ** ** * * * * *
3284600 AAAATGAAAGTGATCAAGATTAAACGACAAGTCAAAAAATGAAAAAAAACTAGGATTATACCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGA-GATTAAATCACG
3284665 AGTCAA
64 AGTCAA
* ** ** * * *
3284671 AAAACGAAAACAACCAAGATTAATTCATGAGTCAAAAAATCAAAATGA-CAAGCATTAAA-CAAT
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAG-ATTAAATC-AC
*
3284734 GTGTCAA
63 GAGTCAA
* ** * ** ** * * * **
3284741 AAAATGAAAACGACCGGGATTAAAGCATGACACAAAAAATGTAAAACAACGGGGATTAAACCATA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATG-AAAATGACCGAGATTAAATCACG
3284806 AGTCAA
64 AGTCAA
* *** ** ** * * *
3284812 AAAGTGAAAATGATTGAGATTAAACCACAAGTCAAAATATGAAAATGACTAAAATT-AATGATGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCAAAA-ATGAAAATGACCGAGATTAAATCACGA
3284876 GTCAA
65 GTCAA
* * ** * * * * *
3284881 AAAATGGAAATGA-C-GGCATTAAATTACGAGCCAAAGAAAT-AAAATGATCG-GAATCAAATTA
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTC-AA-AAATGAAAATGACCGAG-ATTAAATCA
* * *
3284942 TGAGTTAG
62 CGAGTCAA
* * * * *
3284950 AAAATAAAAATGACCGAGATTCAAACCACT-AGGTAAAAAAATGAAAACGAACTG-GAATTAAAT
1 AAAATGAAAATGACCAAGATT-AAACCA-TGA-GT-CAAAAATGAAAATG-ACCGAG-ATTAAAT
*
3285013 CACAAGTCAA
60 CACGAGTCAA
* ** ** * * * * * * *
3285023 AATACAAAAATGATGGAA-A-TAAATCATGAATCTAAACT-AAAACGACTGGGATTAAA-CACG-
1 AAAATGAAAATGA-CCAAGATTAAACCATGAGTCAAAAATGAAAATGACCGAGATTAAATCACGA
*
3285083 TTCAA
65 GTCAA
* * * ** * * * * * *
3285088 AAAATCACAA-CAATAGGGA-TAAACCATG-GTTAGAAAATGAAAATGACCAAGATGAAACCACC
1 AAAATGAAAATGACCA-AGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACG
* *
3285150 AGTTAG
64 AGTCAA
* * * * * * * * ** * *
3285156 AAAATGAAAACGATCAGGATTACAACTACGAGTTAGAAAATGAAGA-CAATG-GATTAGAACCAT
1 AAAATGAAAATGACCAAGATTA-AACCATGAGTCA-AAAATGAAAATGACCGAGATTA-AATCAC
*
3285219 GAGCTTAGA
63 GAG-TCA-A
* * * * ** ** * *
3285228 GAAATAAAAATGA-CAATCAATTAAATCAAAAGTCAGAAAATG-AAATCGATAGGAAATT-AACC
1 AAAATGAAAATGACCAA--GATTAAACCATGAGTCA-AAAATGAAAAT-GA-CCGAGATTAAATC
* *
3285290 ATGAGTCGA
61 ACGAGTCAA
* * * *** * * * * * *
3285299 AAATTAAAAACGACTGGGATTAAATCATGAGTAATAAAAATGAAAATGATCAAGATTAAACCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGT--CAAAAATGAAAATGACCGAGATTAAATCACG
*
3285364 -GTCAG
64 AGTCAA
** *** * * * *
3285369 AAAATGAAAACAACTGGGATTAAACAATGGGTTAGAAAATGAAAATGACCAAGATTAAATCACGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACGA
*
3285434 GTCAT
65 GTCAA
* * * ** * *** * *
3285439 AAAATGAAAATGATCAATATTAAATCACAAGTCAAAGAAATAAAAATGATAAAAATTAAATCACA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AA-AAATGAAAATGACCGAGATTAAATCACG
*
3285504 AGTCAG
64 AGTCAA
* * * **
3285510 AAAATGAAAACGATCAAGATTAAACCATGAGTCAGGAAATGAAAATGATAATGAAAATTATTGGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATG--ACCG------A---G-
* * *
3285575 ATTGAATTACGAGTCAG
53 ATTAAATCACGAGTCAA
**** ** * ** *
3285592 AAAATGAAAATGATTGGGAGTTTTA-CATGAGTTAAAAAATGAAAACAACC-AGAATTAAAGCAC
1 AAAATGAAAATGACCAAGA-TTAAACCATGAG-TCAAAAATGAAAATGACCGAG-ATTAAATCAC
*
3285655 AAGTCAA
63 GAGTCAA
*** * * * ** * * *
3285662 AAAATGAAAATGACTGGGACTAAAACC-T-CGTGAGAAAATGAAAACCACCAAGATTAAACCATG
1 AAAATGAAAATGACCAAGA-TTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACG
* *
3285725 AGTGAG
64 AGTCAA
*** ** * * * * * **
3285731 AAAATGAAAGCAATTAGGATTAAACAACGAGTCAGAAAATGAAAAACGACCGAGATTATA-CTGT
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATG-AAAATGACCGAGATTAAATC-AC
*
3285795 GAATCAA
63 GAGTCAA
* *** * * * **
3285802 AAAATGAAAAGGACTGTGATTAAATCATAAGTCAAAAAATAAAAATGA-TAAGGATTAAA-CA--
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGA-GATTAAATCACG
*
3285863 TGTCAA
64 AGTCAA
* * ** * *
3285869 AAAATGAAAACGA-CAGGGATTAAAGTA-GAAGTCAAAAAATGTAAAA-CAACGAGAATTAAA-C
1 AAAATGAAAATGACCA-AGATTAAACCATG-AGTC-AAAAATG-AAAATGACCGAG-ATTAAATC
*
3285930 TACAAGTCAA
61 -ACGAGTCAA
** ** * * * * * * **
3285940 AAGGTGAAAATGACTGAGATTAAACCA-CATGTTAGAAAATGAAAATGATCAAAATTAAATGAAA
1 AAAATGAAAATGACCAAGATTAAACCATGA-GTCA-AAAATGAAAATGACCGAGATTAAATCACG
3286004 AGTCAA
64 AGTCAA
*** * * * * * *
3286010 AAAATGAAAATGA-TTGGCATTAAATCACGTA-TCAAAGAAATAAAAATGACCAAAATCAAATCA
1 AAAATGAAAATGACCAAG-ATTAAACCATG-AGTC-AA-AAATGAAAATGACCGAGATTAAATCA
*
3286073 CAAGTCAA
62 CGAGTCAA
* * * * *
3286081 AAAATGAAAATGATCGAGATTAAACCACT-AGTCAAAAAGTGAAAATGATCGAAATTAAATCACA
1 AAAATGAAAATGACCAAGATTAAACCA-TGAGTCAAAAA-TGAAAATGACCGAGATTAAATCACG
3286145 AGTCAA
64 AGTCAA
* * * * ** * * * * * *
3286151 AAAATAAAAATGGCCAAAATTAAATCATGAGTCTGGAACTGAAAATGACCTACATGAAACCACTA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCACGA
3286216 GT-AA
65 GTCAA
* * * * * ** * * * *
3286220 GAAAATAAAAAATGATCGAGATTAAACCACGAGTCAAAAAATGAAGACAACAGCGATTAAACCAT
1 -AAAAT-GAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCAC
*
3286285 GAGTTAGA
63 GAGTCA-A
* * * * * **
3286293 GAAATAAAAATGAAC-AGAATTAAATCACAT--GTCAGAAAATTAAAAGGATAG-GAATTAAA-C
1 AAAATGAAAATGACCAAG-ATTAAA-C-CATGAGTCA-AAAATGAAAATGACCGAG-ATTAAATC
* * *
3286353 GATGAGTTAG
61 -ACGAGTCAA
* * * * * *
3286363 AAAATGAAAACGACTAAGATTAAATCACGAGTCAGAAAATAAAAATGACC-AGGATTAAA-CGAT
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGA-GATTAAATC-AC
*
3286426 GATTCAA
63 GAGTCAA
* * * * * * * *
3286433 AAAATGAAAATGACCAGGATTAAACCATGGGTTAGAGAATGAAAAAGATC-AGGATTAAACCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGA-GATTAAATCACG
* * *
3286497 GGTTAG
64 AGTCAA
* *** * * *
3286503 AAAATGAAAACGAATGAGATTAAATCATGAGTCAAAAAATGAAAATGATCG-GTATTAAATCACA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAG-ATTAAATCACG
*
3286567 AGTTAGA
64 AGTCA-A
* * * * * * * * *
3286574 GAAATAAAAATGATCACA-ATTAAATCACGAGTCAAAAAATGAAAACGATCAAGATTAAACCACG
1 AAAATGAAAATGACCA-AGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCACG
3286638 AGTCAGGAAATAAA
64 AGTC--------AA
* * * ** * * *
3286652 AATGATAGTGAAAATTACTAAAATTAAATTATGAGTCAAAAAATAAAAATAACTGAGATTAAAAT
1 AA--A-A-TGAAAATGACCAAGATTAAACCATGAGTCAA-AAATGAAAATGACCGAGATT-AAAT
*
3286717 GCA--AGTTAA
60 -CACGAGTCAA
* * ** * ** * * * **
3286726 AAAATGAAAACGA-CTAGAATTAAAGGATGAGTTAGAAAATGAAAATGATTGGGACTAAACCTTG
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACG
* *
3286790 AGTGAG
64 AGTCAA
** * * * * * ** *
3286796 AAAATGAAAACCAACAGGATTAAACCACGAGTTAGAAAATGAAAGTGATATG-GATTAAA-CAAT
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGA-CCGAGATTAAATC-AC
*
3286859 GAGTCAG
63 GAGTCAA
* * * * * * * * * *
3286866 AAAATGTCAAACGA-TAGGGATTATACCACGAGTCAGAAAATGAAAATGACTGGGATTGAATCAT
1 AAAATG-AAAATGACCA-AGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCAC
3286930 GAGTCAA
63 GAGTCAA
* * * * * * *
3286937 AACAT-AAACATGA-CAGGGATTAAACAACGTA-T-AGGAAAATGAAAATGACAGGGATTAAAGC
1 AAAATGAAA-ATGACCA-AGATTAAACCATG-AGTCA--AAAATGAAAATGACCGAGATTAAATC
*
3286998 ATGAGTCAGA
61 ACGAGTCA-A
* ** * * *
3287008 AAATAT-AAAAT-AACAAGGATTAAACCACAAGTCAAAAGTGAAAATGACCGAGATTAAACCATG
1 AAA-ATGAAAATGACCAA-GATTAAACCATGAGTCAAAAATGAAAATGACCGAGATTAAATCACG
* *
3287071 AGTTAG
64 AGTCAA
** * * ** * *
3287077 AAAATGAAAATGACC-AGAATTAAATGATGAGTTAAAAAAAGAAAAAAATCG-GCATTAAATCAT
1 AAAATGAAAATGACCAAG-ATTAAACCATGAG-TCAAAAATGAAAATGACCGAG-ATTAAATCAC
3287140 GAGTCAA
63 GAGTCAA
* ** * * * *
3287147 AGAAATAAAAATGA-CTGGAATCAAATCACGAGTCAAAAAATGAAAATGACC-AGGATTAAACCA
1 A-AAATGAAAATGACCAAG-ATTAAACCATGAGTC-AAAAATGAAAATGACCGA-GATTAAATCA
**
3287210 CTTGTCAA
62 CGAGTCAA
* * * * *
3287218 AAAATGAAAATGACCGAA-ATTAAATCATGAGTCAAAAAATAAAAATGACCAAAATTAAATCATG
1 AAAATGAAAATGACC-AAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCACG
**
3287282 AGTGTA
64 AGTCAA
* * * * ** * * * * ** * *
3287288 AAACTAAAAACGATCGGGATTAAAACACGAGTCAAAAAATTAAAAACGATAGGGATTAAAGCACG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAA-TGAAAATGACCGAGATTAAATCACG
* *
3287353 AGTTAG
64 AGTCAA
** * * * * * * ** *
3287359 AAAATGAAAACAATCGAGATGAAACCATCAGTCAGAAAATGAAAAATGATCGAGGTTAAGCCACA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATG-AAAATGACCGAGATTAAATCACG
3287424 AGTCAA
64 AGTCAA
* ** *** * * * *
3287430 AAAATGAAGACAATGGAGATTAAACCATGAGTCAGAGAAATAAAAATGACC-ATAATTAAACCAT
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-A-AAATGAAAATGACCGA-GATTAAATCAC
3287494 GAGTCAGA
63 GAGTCA-A
*** * * * * *
3287502 AAAATGAAAAGGATGGGAATTAGATCATGACCAAGAGTCTGAAAATGAAAATGACCAAGATTAAA
1 AAAATG-AAA--AT--GACCAAGATTA-AACCATGAGTC-AAAAATGAAAATGACCGAGATTAAA
* *
3287567 TCATGAGT-TA
59 TCACGAGTCAA
* * * * *
3287577 GAAATTAGAAATGACCAAGATTAAA-CATGAGTCAAAAAATAAAAATGACAC-AAATTAAATCAT
1 AAAATGA-AAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGAC-CGAGATTAAATCAC
*
3287640 GAGTTAA
63 GAGTCAA
* * * * **
3287647 AAAATGAAAATGACCGAGATTAAACCATGGGTCATAAAATGAAAATGATCGAGATTAAACCTTG-
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACGA
*
3287711 GTTAA
65 GTCAA
*** * * * ** * * *
3287716 AAAAGTGAAAATGATTGAGATTAAATCACGAGTTAGAAAATGAAAAAAACTCAATATTAAATCAT
1 AAAA-TGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGAC-CGAGATTAAATCAC
* *
3287781 AAGCCAGA
63 GAGTCA-A
* * * * * *
3287789 GAAATAAAAATGATCCAA-ATTAAATCATGAGTTAGAAAATGAAAATGACTGAGATCAAAAT-AC
1 AAAATGAAAATGA-CCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGAT-TAAATCAC
*
3287852 GAGTTAAA
63 GAG-TCAA
* * ** ** * * * * * *
3287860 AAAATGAAAACGACTGAA-ATTAAAGTACAATTTAGAAAATGAAAATGACTG-GAACTAAACCAT
1 AAAATGAAAATGAC-CAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAG-ATTAAATCAC
* *
3287923 GAGTGAG
63 GAGTCAA
* * * * * * *
3287930 AAAATGAAAACTG-CTAGGATTAAATCATGAGTCAGAAAAT-AAAAGCGATCGGGATTAAATGAC
1 AAAATGAAAA-TGACCAAGATTAAACCATGAGTCA-AAAATGAAAA-TGACCGAGATTAAATCAC
3287993 GAGTCAA
63 GAGTCAA
* * ** * * * * *
3288000 AAAATGAAAACGATCGGGATTATACCATGACTCAAAAATAAAAATGACTGGGATTAAATCACGAG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCAAAAATGAAAATGACCGAGATTAAATCACGAG
3288065 TCAA
66 TCAA
* * * * * * * *
3288069 AAAATAAAAATGA-TAGGGATTAAACAAT-CG-CAAGAAAATGAAAATGGCATG-GATTAAAGCA
1 AAAATGAAAATGACCA-AGATTAAACCATGAGTC-A-AAAATGAAAATGAC-CGAGATTAAATCA
3288130 CGAGTCAGA
62 CGAGTCA-A
* * ** ** * ** ** * * *
3288139 AAATTTAAAACAAGGAGGAACAAAACCACAAGTTAAAAAGTGAAAATGACCGAGATTAAACCATG
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTCAAAAA-TGAAAATGACCGAGATTAAATCACG
3288204 AGT-AA
64 AGTCAA
** * * * *
3288209 GAAAATGAAAATGA-TTAGAATTAAACGACGAGTTAAAAAATGAAAATGACTG-GCATTAAATCA
1 -AAAATGAAAATGACCAAG-ATTAAACCATGAG-TCAAAAATGAAAATGACCGAG-ATTAAATCA
*
3288272 TGAGTCAA
62 CGAGTCAA
* * * * *
3288280 AGAAAT-AAAATGACCAAAATCAAATCACGAGTCAAAAAATGAAAATGA-CTAGAATTAAATCAC
1 A-AAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAG-ATTAAATCAC
* *
3288343 AAGTCAT
63 GAGTCAA
* * * * ** * * * ** * *
3288350 AAAATAAAAATTACCAAAATTAAATCACAAGTCTAAAACTAAAAACGA-TTACGATTAAACCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGA-GATTAAATCACG
*
3288414 AGTCAG
64 AGTCAA
* * * * *
3288420 AAAATTAAAACGA-CAGGGATTAAACCATGACTTAGAGAAAT-AAAATGACCGTA-ATTAAATCA
1 AAAATGAAAATGACCA-AGATTAAACCATGAGTCA-A-AAATGAAAATGACCG-AGATTAAATCA
*
3288482 CGAGTTAGA
62 CGAGTCA-A
* * ** * * * *
3288491 GAAATAAAAATGATCGTA-ATTAAATCATGAGTCAAAAAATGAAAAGGA-TGGGAATTAAA-CTA
1 AAAATGAAAATGA-CCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAG-ATTAAATC-A
* *
3288553 TGAGTCAG
62 CGAGTCAA
* * * * * * ** *
3288561 AAAATGAAAATGACTAGGATTAAATCACGAGTTAGAAAAT-ACAAACGACTAAGATTAAACCACG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGA-AAATGACCGAGATTAAATCACG
*
3288625 AGTCAG
64 AGTCAA
* * * ** * ** *
3288631 AAAATAAAAATGACTAGGATT-AACTCACAAGTTAGAAAATGAAAACAACC-AGGACTAAA-C-C
1 AAAATGAAAATGACCAAGATTAAAC-CATGAGTCA-AAAATGAAAATGACCGA-GATTAAATCAC
3288692 --GTCAA
63 GAGTCAA
* ** * * ** * * *
3288697 AAAATAAAAATGACTGAGATTAAACCATGGGTTAAAAAATGAAAACAACTGAGAATAAATCATGA
1 AAAATGAAAATGACCAAGATTAAACCATGAG-TCAAAAATGAAAATGACCGAGATTAAATCACGA
* *
3288762 GTTAG
65 GTCAA
* * * * ** * * * *
3288767 AAAATGAAAACGATC-GGTATTAAATCACAAGTTAGAGAAATAAAAATGATCGAAATTAAATCAC
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTCA-A-AAATGAAAATGACCGAGATTAAATCAC
3288831 GAGTCGAA
63 GAGTC-AA
*** * * ** * *
3288839 AAAA-GAAAGCAATCGAGATTAAACCACAAGTCAAGAAACAAAATGATAATGAAAATTATCG-GA
1 AAAATGAAAATGACCAAGATTAAA-C-C-A-T---GAGTC--AA--A-AATGAAAATGACCGAG-
* *
3288902 ATTAAATTATGAGTCAA
53 ATTAAATCACGAGTCAA
* * ** * * * * *
3288919 AAAATGAAAATGACCTAGATTAAAACACAAGTTAAAAAATGAAAATGATCAAAATTAAACCACGA
1 AAAATGAAAATGACCAAGATTAAACCATGAG-TCAAAAATGAAAATGACCGAGATTAAATCACGA
3288984 GTCAA
65 GTCAA
* * * * * ** ** * *
3288989 AAAATGAAAATGACTAGGACTAAACCCTGAGTGAGAAAATGAAAACCACTAAGATTAAACCATGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACGA
3289054 GTCAA
65 GTCAA
** ** * * * * * *
3289059 AAAATGAAAGCGATTGAA-ATTAAACAATGAGTCAAAAAATGAAAAACGATCAAGATTATACCAC
1 AAAATGAAAATGA-CCAAGATTAAACCATGAGTC-AAAAATG-AAAATGACCGAGATTAAATCAC
3289123 GAGTCAA
63 GAGTCAA
** * * * * * * *
3289130 AAAATGAAAACAACCAGGATTAAATCACGAGTCAAAAAAT-AAAATGGCAGGGATTAAA-CAATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATC-ACG
3289193 CA-TCAA
64 -AGTCAA
** * * * ** ** * * *
3289199 AAAATGAAAAT-AATAGGGATTAAAGCACGAGTCAAAAAATGTAAAACAATAGGGGTTAAACCAC
1 AAAATGAAAATGACCA-AGATTAAACCATGAGTC-AAAAATG-AAAATGACCGAGATTAAATCAC
* *
3289263 AACTCAA
63 GAGTCAA
* ** * * *
3289270 AAAGTGAAAATGACTGAGATTAAACCAAGAGTTAGAAAATGAAAATGA-CTAGAATTAAA-CGAC
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAG-ATTAAATC-AC
3289333 GAGTCAA
63 GAGTCAA
*** * * ** *
3289340 AAAATGAAAATGA-TTGGCATTAAATCATGAGTCAAAGAA-AAAAATGATTG-GAATCAAATCAC
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTCAAA-AATGAAAATGACCGAG-ATTAAATCAC
3289402 GAGTCAA
63 GAGTCAA
** * * * *
3289409 AAAAT-AAAATTGACTGAGATTAAACCACT-ACTTACAAAATTAAACGATTA--GA-ATTAAATC
1 AAAATGAAAA-TGACCAAGATTAAACCA-TGAGTCA-AAAATGAAA--ATGACCGAGATTAAATC
*
3289469 ATGAGTCAA
61 ACGAGTCAA
* * * ** * * * *
3289478 AAAATCAAAATGACCAAAATTAAATCACAAGTCTAAAACTAAAAATGACC-AGGATTAAACCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGA-GATTAAATCACG
* *
3289542 AGTTAG
64 AGTCAA
* * * * * * * *
3289548 AAAATTAAAATGA-CAAGGATTAAATCACGAGTCAGAAATGAAAATGACAGAGATGAAACCACTA
1 AAAATGAAAATGACCAA-GATTAAACCATGAGTCAAAAATGAAAATGACCGAGATTAAATCACGA
*
3289612 GTCAG
65 GTCAA
** * ** ** * * * *
3289617 AAAATGAAAAACAATCGGGATTAAACCATGAGTCAAAAAAT-AAAGACAACAGGGATTAAACCAT
1 AAAATG-AAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAA-ATGACCGAGATTAAATCAC
3289681 GAGTCAGA
63 GAGTCA-A
* * * * * ** * * * * *
3289689 GAAATAAAAATGA-CTAGAATTAGATCACAAGTCAAAAAATGAAAAGGA-TGGGAATTAAACCAT
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTC-AAAAATGAAAATGACCGAG-ATTAAATCAC
* *
3289752 GATTCAG
63 GAGTCAA
** * * * * * *
3289759 AAAATGAAAACAACCAAGATTAAATCACGAGTTAAAAAATAAAAATGACC-AGGATTAAACCATG
1 AAAATGAAAATGACCAAGATTAAACCATGAG-TCAAAAATGAAAATGACCGA-GATTAAATCACG
3289823 AGTCAA
64 AGTCAA
* ** * * * * * * * *
3289829 AAAATAAAAACAACCTAGATTAAATCATGAGTCAGAAAATAAAAATGACTGGGATTAAAACATGG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACGA
3289894 GTCAA
65 GTCAA
* * * * * *
3289899 AAAATGAAACTAACTAGGATTAAACCATG-GGCTAGAAAATGAAAACT-ACTGAGATTAAATCAC
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-A-AAAATGAAAA-TGACCGAGATTAAATCAC
*
3289962 -ATCTCAA
63 GA-GTCAA
* * * * ** * * * * *
3289969 AAAATGAAAATGATCGATATTAAATCACAAGTTAGAGAAATAAAAATGATCAAAATTAAATCACG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-A-AAATGAAAATGACCGAGATTAAATCACG
*
3290034 AGTCAG
64 AGTCAA
* * * * *
3290040 AAAATGAAAATGATCAAGATTAAACCTCAAGTCAGGAAATAAAAATGATAATGAAAATTACCGAA
1 AAAATGAAAATGACCAAGATTAAA-C-C-A-T---G-AGT--CAA--A-AATGAAAATGACCGAG
* *
3290105 ATTAAATTATGAGTCAA
53 ATTAAATCACGAGTCAA
* **** * * *
3290122 AAAATGAAAATAATGGGGATTAAA--ATGCTAGTTAAGAAATGAAAACGA-CTAGAATTAAAGT-
1 AAAATGAAAATGACCAAGATTAAACCATG--AGTCAA-AAATGAAAATGACCGAG-ATTAAA-TC
* *
3290183 ACAAGTCAG
61 ACGAGTCAA
* **** * * * ** * *
3290192 AAAATGAAAACGATTGTGACTAAACCTTGAGTGAGAAAATGAAAACCACCAAGATTAAACCACGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACGA
* *
3290257 GTTAG
65 GTCAA
* ** *** ** * * * * *
3290262 AAAGTGAAAGCGATTGAGATTAAATGATAAGTCAAAAAATGAAAAACT-ACTGAGAATATACCAC
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATG-AAAA-TGACCGAGATTAAATCAC
3290326 GAGTCAA
63 GAGTCAA
* * ** * * * * * * *
3290333 AAATTGAAAATGATCGGGATTAAATCATGAGTCAAAAAATAAAAATGACAGGGATTAAATAATGT
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCACGA
3290398 GTCAA
65 GTCAA
* * * ** * *
3290403 AAAATGAAAATGA-CAAGGATTAGAGCATGAGTCAGAAAATGTAAAA-CAATGGGTATTAAACCA
1 AAAATGAAAATGACCAA-GATTAAACCATGAGTCA-AAAATG-AAAATGACCGAG-ATTAAATCA
*
3290466 CAAGTCAA
62 CGAGTCAA
* **** * * ** * * * *
3290474 AAAGTGAAAATGGTTGAGATTAAATCGTGAGTCAGAAAATGAAAACAACCAAAATTAAATGATGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACGA
3290539 G-CTAA
65 GTC-AA
* ** * * ** * * *
3290544 AAAATAAAAATGA-CTTGCACTAAATCATGAGTCAAAGAAACAAAAATGATCGAAATCAAATCAC
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTC-AA-AAATGAAAATGACCGAGATTAAATCAC
*
3290608 GAGTCAG
63 GAGTCAA
* * ** ** * ** ** * *
3290615 AAAATAAAAATGAACGGGATTAAACCACAAGCCAAAAAACAAAAATGA-TTAGAATTAAATAATG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAG-ATTAAATCACG
*
3290679 AGTCAG
64 AGTCAA
* * * * * * * * *
3290685 AAAATAAAAATGACCAAAATTAAATCACGAGTCTAAAATTGAAAACGATCGAGATTAAACCATGA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCACGA
3290750 GTCAA
65 GTCAA
* ** *** * * * * * **
3290755 AAAATGAAGACAACGGGGCTTAAACCATGACTCACAGAAATAAAAATGACCAAAATTAAATCATA
1 AAAATGAAAATGACCAAGATTAAACCATGAGTCA-A-AAATGAAAATGACCGAGATTAAATCACG
*
3290820 AGTCAG
64 AGTCAA
* *** * ** * * * *
3290826 AAAATGAAAAGGA-TGGGAATTAAAGCACAAGTCAGAAAATGAAAAAGATCAAGATTAAATCATG
1 AAAATGAAAATGACCAAG-ATTAAACCATGAGTCA-AAAATGAAAATGACCGAGATTAAATCACG
3290890 AGTCAA
64 AGTCAA
** * * * * * *
3290896 AAAACAAAAACGACCAAGATTAAGCAACT-AGTAAGAAAATAAAAATGACCCAGATTAAATCACG
1 AAAATGAAAATGACCAAGATTAAACCA-TGAGTCA-AAAATGAAAATGACCGAGATTAAATCACG
*
3290960 AGTCAG
64 AGTCAA
* * * * * * **
3290966 AAAATGAAAATGACCAGGATTGAACCATGGGTCAAAAAATAAAAACGATC-AGGATTAAATCGTG
1 AAAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGA-GATTAAATCACG
* * *
3291030 GGTTAG
64 AGTCAA
* * * * * * * *
3291036 AAAATGAAAACGATCGAGATTAAATCATGAGTTAAAAAATGAAAATGATCGACATTAAATCACAA
1 AAAATGAAAATGACCAAGATTAAACCATGAG-TCAAAAATGAAAATGACCGAGATTAAATCACGA
3291101 GT-AA
65 GTCAA
* * * * * * * * * * *
3291105 GAGAAATAAAAATAATCAAAATTCAATCACGAGTCAAAAAAAGAAAACGATCGAGA-TAAACCAC
1 -A-AAATGAAAATGACCAAGATTAAACCATGAGTC-AAAAATGAAAATGACCGAGATTAAATCAC
*
3291169 GAGTTAA
63 GAGTCAA
*
3291176 GAAATGAAAATGA
1 AAAATGAAAATGA
3291189 TAATGAAAAT
Statistics
Matches: 9124, Mismatches: 2549, Indels: 1649
0.68 0.19 0.12
Matches are distributed among these distances:
53 3 0.00
54 5 0.00
55 10 0.00
57 4 0.00
58 15 0.00
59 15 0.00
60 5 0.00
61 21 0.00
62 33 0.00
63 18 0.00
64 22 0.00
65 54 0.01
66 72 0.01
67 96 0.01
68 236 0.03
69 1098 0.12
70 4008 0.44
71 2364 0.26
72 338 0.04
73 119 0.01
74 42 0.00
75 28 0.00
76 12 0.00
77 53 0.01
78 19 0.00
79 32 0.00
80 52 0.01
81 63 0.01
82 234 0.03
83 17 0.00
84 6 0.00
85 13 0.00
86 14 0.00
87 3 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.20
Consensus pattern (69 bp):
AAAATGAAAATGACCAAGATTAAACCATGAGTCAAAAATGAAAATGACCGAGATTAAATCACGAG
TCAA
Found at i:3279089 original size:106 final size:104
Alignment explanation
Indices: 3278964--3279193 Score: 264
Period size: 106 Copynumber: 2.2 Consensus size: 104
3278954 AGATTAAACC
* ** * * ***
3278964 ACGAGTCCAAAAATGAAAATGACCAAAATTAAATGATGAATCAAAAAATGAAAATGACTGGCATT
1 ACGAGT-CTAAAATGAAAATGACCAAAATTAAACCATGAATAAAAAAATGAAAACGACTAAAATT
* * *
3279029 AAATCATGAGCCAAAGAAATTAAAACGACC-AGAATCAAATC
65 AAATAATGAGCCAAA-AAATAAAAACGACCGA-AATCAAATA
* * *
3279070 ATGAGTCATAAAATGAAAATGACCAAAATTAAACCATTAGTAAAAAAATGAAAACGACTAAAATT
1 ACGAGTC-TAAAATGAAAATGACCAAAATTAAACCATGAATAAAAAAATGAAAACGACTAAAATT
* *
3279135 AAATAATGAGCCAAAAAATAAAAATGACCGAAATTAAATA
65 AAATAATGAGCCAAAAAATAAAAACGACCGAAATCAAATA
3279175 ACGAGTCTAAAATTGAAAA
1 ACGAGTCTAAAA-TGAAAA
3279194 CAGCCAAGAT
Statistics
Matches: 104, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
104 5 0.05
105 32 0.31
106 67 0.64
ACGTcount: A:0.56, C:0.13, G:0.13, T:0.19
Consensus pattern (104 bp):
ACGAGTCTAAAATGAAAATGACCAAAATTAAACCATGAATAAAAAAATGAAAACGACTAAAATTA
AATAATGAGCCAAAAAATAAAAACGACCGAAATCAAATA
Found at i:3279150 original size:18 final size:18
Alignment explanation
Indices: 3279129--3279175 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
3279119 GAAAACGACT
3279129 AAAATTAAATAATGAGCCA
1 AAAATTAAATAATGA-CCA
*
3279148 AAAAATAAA-AATGACC-
1 AAAATTAAATAATGACCA
*
3279164 GAAATTAAATAA
1 AAAATTAAATAA
3279176 CGAGTCTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 7 0.29
17 4 0.17
18 5 0.21
19 8 0.33
ACGTcount: A:0.64, C:0.09, G:0.09, T:0.19
Consensus pattern (18 bp):
AAAATTAAATAATGACCA
Found at i:3279439 original size:34 final size:33
Alignment explanation
Indices: 3279377--3279575 Score: 145
Period size: 34 Copynumber: 5.8 Consensus size: 33
3279367 AAAATGACGA
*
3279377 AAATTAAGTCACGAGTCAGAAATGAAAAC-ATAG
1 AAATTAA-ACACGAGTCAGAAATGAAAACAATAG
* * **
3279410 AAATTAACACACGAGTCCGAAAATGAAAACGACCG
1 AAATTAA-ACACGAGTCAG-AAATGAAAACAATAG
* *
3279445 AGATTAATCACGAGTCAGAAAAATGAAAACAATAG
1 AAATTAAACACGAGTCAG--AAATGAAAACAATAG
* * **
3279480 AAATTAAACCACGAGTCCGAAATGAAAA-GACCG
1 AAATTAAA-CACGAGTCAGAAATGAAAACAATAG
*
3279513 AGAATTAAATCACGAGTCAGAAATAAAAAACAACTAG
1 A-AATTAAA-CACGAGTCAGAAAT-GAAAACAA-TAG
* *
3279550 --ATTAAACCATGAGTCAGAAATAAAAA
1 AAATTAAA-CACGAGTCAGAAATGAAAA
3279576 TGACCTGGAT
Statistics
Matches: 133, Mismatches: 25, Indels: 16
0.76 0.14 0.09
Matches are distributed among these distances:
33 24 0.18
34 67 0.50
35 31 0.23
36 10 0.08
37 1 0.01
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.16
Consensus pattern (33 bp):
AAATTAAACACGAGTCAGAAATGAAAACAATAG
Found at i:3279532 original size:137 final size:137
Alignment explanation
Indices: 3279270--3279613 Score: 324
Period size: 137 Copynumber: 2.5 Consensus size: 137
3279260 AAAATGACTG
* * * * * * * *
3279270 AGATGAAACCACCAGTCAAAAAATGAAAAATGATCAGGATTAAACCACGAGTCAAAAAATGAAGA
1 AGATTAAACCACGAGTC-AGAAAT-AAAAACGACCTGGATTAAATCACGAGTCAAAAAATGAAAA
** ** * * * *
3279335 CAACCGGGATTAAACTACAAGTCATAGAAATAAAAATGACGAAAATTAAGTCACGAGTCAGAAAT
64 CAATAGAAATTAAACCACGAGTC--CGAAATAAAAATGACGAAAATTAAATCACGAGTCAGAAAT
*
3279400 -GAAAAC-A-T
127 AAAAAACAACT
* *
3279408 AGAAATT-AACACACGAGTCCGAAAATGAAAACGACC-GAGATT-AATCACGAGTCAGAAAAATG
1 AG--ATTAAAC-CACGAGTCAG-AAATAAAAACGACCTG-GATTAAATCACGAGTCA-AAAAATG
* *
3279470 AAAACAATAGAAATTAAACCACGAGTCCGAAATGAAAA-GACCGAGAATTAAATCACGAGTCAGA
60 AAAACAATAGAAATTAAACCACGAGTCCGAAATAAAAATGA-CGAAAATTAAATCACGAGTCAGA
3279534 AATAAAAAACAACT
124 AATAAAAAACAACT
* * *
3279548 AGATTAAACCATGAGTCAGAAATAAAAATGACCTGGATTAAATCACGAGTCAAAAAATTAAAACA
1 AGATTAAACCACGAGTCAGAAATAAAAACGACCTGGATTAAATCACGAGTCAAAAAATGAAAACA
3279613 A
66 A
3279614 CCTGGATTAA
Statistics
Matches: 168, Mismatches: 25, Indels: 27
0.76 0.11 0.12
Matches are distributed among these distances:
136 2 0.01
137 62 0.37
138 43 0.26
139 45 0.27
140 16 0.10
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (137 bp):
AGATTAAACCACGAGTCAGAAATAAAAACGACCTGGATTAAATCACGAGTCAAAAAATGAAAACA
ATAGAAATTAAACCACGAGTCCGAAATAAAAATGACGAAAATTAAATCACGAGTCAGAAATAAAA
AACAACT
Found at i:3279564 original size:68 final size:68
Alignment explanation
Indices: 3279361--3279613 Score: 258
Period size: 68 Copynumber: 3.7 Consensus size: 68
3279351 ACAAGTCATA
* *
3279361 GAAATAAAAATGA-CGAAAATTAAGTCACGAGTCAG--AAATGAAAAC-ATAGAAATT-AACACA
1 GAAATAAAAATGACCG-AGATTAAATCACGAGTCAGAAAAAT-AAAACAATAG-AATTAAAC-CA
3279421 CGAGTCC
62 CGAGTCC
* *
3279428 GAAAATGAAAACGACCGAGATT-AATCACGAGTCAGAAAAATGAAAACAATAGAAATTAAACCAC
1 G-AAATAAAAATGACCGAGATTAAATCACGAGTCAGAAAAAT-AAAACAATAG-AATTAAACCAC
3279492 GAGTCC
63 GAGTCC
* *
3279498 GAAATGAAAA-GACCGAGAATTAAATCACGAGTCAGAAATAA-AAAACAACTAG-ATTAAACCAT
1 GAAATAAAAATGACCGAG-ATTAAATCACGAGTCAGAAA-AATAAAACAA-TAGAATTAAACCAC
*
3279560 GAGTCA
63 GAGTCC
3279566 GAAATAAAAATGACCTG-GATTAAATCACGAGTCA-AAAAATTAAAACAA
1 GAAATAAAAATGACC-GAGATTAAATCACGAGTCAGAAAAA-TAAAACAA
3279614 CCTGGATTAA
Statistics
Matches: 165, Mismatches: 7, Indels: 27
0.83 0.04 0.14
Matches are distributed among these distances:
66 2 0.01
67 16 0.10
68 67 0.41
69 36 0.22
70 39 0.24
71 5 0.03
ACGTcount: A:0.53, C:0.15, G:0.16, T:0.16
Consensus pattern (68 bp):
GAAATAAAAATGACCGAGATTAAATCACGAGTCAGAAAAATAAAACAATAGAATTAAACCACGAG
TCC
Found at i:3279757 original size:35 final size:35
Alignment explanation
Indices: 3278932--3282194 Score: 514
Period size: 35 Copynumber: 93.5 Consensus size: 35
3278922 TTAAACCATA
*
3278932 AGTCA-AAAAGTGAAAATGATCGAGATTAAACCACG
1 AGTCAGAAAA-TGAAAATGATCGAGATTAAATCACG
* * * * *
3278967 AGTCCA-AAAATGAAAATGACCAAAATTAAATGATG
1 AGT-CAGAAAATGAAAATGATCGAGATTAAATCACG
* * *
3279002 AATCAAAAAATGAAAATGA-CTG-GCATTAAATCATG
1 AGTCAGAAAATGAAAATGATC-GAG-ATTAAATCACG
* * * * * * *
3279037 AGCCAAAGAAATTAAAACGA-CCAGAATCAAATCATG
1 AGTCAGA-AAATGAAAATGATCGAG-ATTAAATCACG
* * * * * **
3279073 AGTCATAAAATGAAAATGACCAAAATTAAACCATT
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * * * *
3279108 AGTAAAAAAATGAAAACGA-CTAAAATTAAATAATG
1 AGTCAGAAAATGAAAATGATC-GAGATTAAATCACG
* * * * * *
3279143 AGCCAAAAAATAAAAATGACCGAAATTAAATAACG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * *
3279178 AGTCTA-AAATTGAAAA-CAGCCAAGATTAAA-CTATG
1 AGTC-AGAAAATGAAAATGA-TCGAGATTAAATC-ACG
* * * * * * *
3279213 AGTTAGAAAATTAAAA-CAACTGGGACTAAACCACG
1 AGTCAGAAAATGAAAATGATC-GAGATTAAATCACG
* * * *
3279248 AGTCAAAAAATGAAAATGA-CTGAGATGAAACCACC
1 AGTCAGAAAATGAAAATGATC-GAGATTAAATCACG
* *
3279283 AGTCAAAAAATGAAAAATGATC-AGGATTAAACCACG
1 AGTCAGAAAATG-AAAATGATCGA-GATTAAATCACG
* * ** * * *
3279319 AGTCAAAAAATGAAGACAACCGGGATTAAA-CTACA
1 AGTCAGAAAATGAAAATGATCGAGATTAAATC-ACG
* * * *
3279354 AGTCATAGAAATAAAAATGA-CGAAAATTAAGTCACG
1 AGTCAGA-AAATGAAAATGATCG-AGATTAAATCACG
* * *
3279390 AGTCAG-AAATGAAAA-CATAGAAATTAACA-CACG
1 AGTCAGAAAATGAAAATGATCGAGATTAA-ATCACG
* * *
3279423 AGTCCGAAAATGAAAACGACCGAGATT-AATCACG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
** * * *
3279457 AGTCAGAAAAATGAAAACAATAGAAATTAAACCACG
1 AGTCAG-AAAATGAAAATGATCGAGATTAAATCACG
* *
3279493 AGTCCG-AAATGAAAA-GACCGAGAATTAAATCACG
1 AGTCAGAAAATGAAAATGATCGAG-ATTAAATCACG
* ** * * * *
3279527 AGTCAG-AAATAAAAAACAACTAGATTAAACCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* *
3279561 AGTCAG-AAATAAAAATGACCTG-GATTAAATCACG
1 AGTCAGAAAATGAAAATGATC-GAGATTAAATCACG
* * ** * *
3279595 AGTCAAAAAATTAAAACAACCTG-GATTAAATCACA
1 AGTCAGAAAATGAAAATGATC-GAGATTAAATCACG
* * * * * *
3279630 AGTCAAAAAATGAAAACGACCGGGATTAAACCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * *
3279665 GGTCAAAAAATGAAAATGA-CTTAGATTAAACCATG
1 AGTCAGAAAATGAAAATGATC-GAGATTAAATCACG
* * * *
3279700 GGTTAGAAAATGAAAATGATCGAGATTAAATAATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * *
3279735 AGTCAGAAAATGAAAATTATCGATATTAAATTACA
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * *
3279770 AGTTAGAGAAATAAAAATGATCGAAATTAAATCACG
1 AGTCAGA-AAATGAAAATGATCGAGATTAAATCACG
* * *
3279806 AGTCAAAAAATGAAAATGATCGAGATCAAATCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* **
3279841 AGTCA-AGAAATGAATATGAT--A-ATTAAA--ATT
1 AGTCAGA-AAATGAAAATGATCGAGATTAAATCACG
* * * * ** *
3279871 A-TCAG--AAT-TAAATTA-CTAG-TCAAAAAATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * *
3279900 TAAATGACCAAGATAAAAATG--CGAG-TTAAA--A--
1 --AGTCA-GAAAATGAAAATGATCGAGATTAAATCACG
* * *
3279931 AAT--GAAAATG---AT---CG-GAATTAAAGCACA
1 AGTCAGAAAATGAAAATGATCGAG-ATTAAATCACG
* * * * * * * **
3279958 AGTTAGAAAATAAAAAT-AACTGGGACTAGACCTTG
1 AGTCAGAAAATGAAAATGATC-GAGATTAAATCACG
* ** * * *
3279993 AGTGAGAAAATGAAAACCA-CTAGGATTAAACCATG
1 AGTCAGAAAATGAAAATGATCGA-GATTAAATCACG
* * *** * *
3280028 AATCAAAAAATGAAAGCAATC-ATGATTAAA-CGGCA
1 AGTCAGAAAATGAAAATGATCGA-GATTAAATC-ACG
* * * *
3280063 AGTCAGAAAATGAAAATGATCGGGATTATACCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* *
3280098 AGTCAAAAAATAAAAATGA-CAGAGATTAAA-CAACG
1 AGTCAGAAAATGAAAATGATC-GAGATTAAATC-ACG
* ** * * *
3280133 CA-TCTGAAAACAAAAAAGA-CAGAGATTAAAGC-CA
1 -AGTCAGAAAATGAAAATGATC-GAGATTAAATCACG
* * * **
3280167 AGTCAGAAAATGTAAAA-CAACGAGGATTAAACCATA
1 AGTCAGAAAATG-AAAATGATCGA-GATTAAATCACG
3280203 AGTCA-AAAAGTGAAAA-GA-CTGAGATTAAA-CTA-G
1 AGTCAGAAAA-TGAAAATGATC-GAGATTAAATC-ACG
* * * * * *
3280236 AAGTTAGAAAATGAAAATGACCAAAATTAAATGATG
1 -AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * ** *
3280272 AGTCAAAAAATAAAAATGAT-G-GCACAAAATCATG
1 AGTCAGAAAATGAAAATGATCGAG-ATTAAATCACG
* * * *
3280306 AGTTA-AAGAATTAAAAATGA-CTAGAATCAAATCACG
1 AGTCAGAA-AA-TGAAAATGATCGAG-ATTAAATCACG
* * ** ** *
3280342 AGTCAAAAAATGAAAACGGCCGAGATTAAGCCACC
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * * *
3280377 AATCAAAAAATGAAAATGACCAAAATTAAATCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * * *
3280412 AGTCAGAAAATAAAAATGACCAAAATTAAATGATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * * *
3280447 AGTCTA-AAACTAAAAACGAT-TAGGATTAAATGATG
1 AGTC-AGAAAATGAAAATGATCGA-GATTAAATCACG
* * * * * * *
3280482 AGTTAGAAAGTTAAAACGATAGGGATTAAA-CTATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATC-ACG
* * *
3280517 AGTCAGAAAATGAAAATGATTGAGATGAAA-CACC
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * *
3280551 AGTCAAAAAATGAAAAATGATGGGGATTAAACCACG
1 AGTCAGAAAATG-AAAATGATCGAGATTAAATCACG
* * ** * * *
3280587 AGTCAAAAAATGAAGACAATGGGGATTAAAGCACG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * *
3280622 AGTTAGAGAAATAAAAATGA-CCAGAATTAAATCATG
1 AGTCAGA-AAATGAAAATGATCGAG-ATTAAATCACG
* * * * *
3280658 AGTCAGAAAATGAAAAGGA-AGGGAATTAAACCATG
1 AGTCAGAAAATGAAAATGATCGAG-ATTAAATCACG
* * *
3280693 AATCA-AAAATGAAAACGA-CCAGGATTAAATCACG
1 AGTCAGAAAATGAAAATGATCGA-GATTAAATCACG
* ** * * *
3280727 AGTCAAAAAAT-AAAAACAACTAGGATTAAA-CTATG
1 AGTCAGAAAATGAAAATGATCGA-GATTAAATC-ACG
* * * * *
3280762 AGTTAGAAAATAAAAACGACCTG-GATTAAATCAAG
1 AGTCAGAAAATGAAAATGATC-GAGATTAAATCACG
* * * * *
3280797 AGTCAGAAAATGAAAATGACCAAGATAAAACCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * **
3280832 GGTTAGAATATGAAAATGACCGAGATTAAATCATA
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * *
3280867 AGTTAGAAAATGAAAACGATCGATATTAAATCACT
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * *
3280902 AGTCAAAGAAATAAAAATGATCAAAATTAAATCACA
1 AGTCAGA-AAATGAAAATGATCGAGATTAAATCACG
* ** * * * *
3280938 AGTCAAAAAACAAAAACGATTGAGATTAAACCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * ** * **
3280973 AGTCAGGAAACGAAAACAAT--A-ATGAAA--ATT
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * * * *
3281003 A-T-TG-GAATTAAATTATGAGTCAAAAATTGAAAATGACC
1 AGTCAGAAAATGAAA--ATGA-TC-GAGATT--AAATCACG
* * ** * * ** * *
3281041 A-TGATTAAAATGTGAGTTA-AAAAATGAAA--ACG
1 AGTCA-GAAAATGAAAATGATCGAGATTAAATCACG
* * * * * * *
3281073 A--CTG-AAATTAAAGCACGAGTCAGAAAATGAAAATGACT
1 AGTCAGAAAATGAAA--ATGA-TC-G-AGAT-TAAATCACG
* * * * *
3281111 AGGACTA-AACCTTGAGTGAGGAAATGAAAACCACTAGGATTAAACCACG
1 A-GTC-AGAA-----AATGA--AAATG---A--TCGA-GATTAAATCACG
* *** * * *
3281160 AGTCAAAAAATGAAAGCAAT-TAGGATTAAACCATG
1 AGTCAGAAAATGAAAATGATCGA-GATTAAATCACG
* * * * *
3281195 AGTCAGAAAATGAAAAATGA-CTAGACTATACCATG
1 AGTCAGAAAATG-AAAATGATCGAGATTAAATCACG
* * *
3281230 AGTCA-AAAAGTTAAAACGATCGGGATTAAATCACG
1 AGTCAGAAAA-TGAAAATGATCGAGATTAAATCACG
* * * *
3281265 AGTCAAAAAATAAAAATGA-CAGGGACTAAA-CAACG
1 AGTCAGAAAATGAAAATGATC-GAGATTAAATC-ACG
* * * ** *
3281300 CA-TCAAAAAATGAAAATGATAGGGATTAACGCAAG
1 -AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* ** * * **
3281335 AGTCAAAAAATGTAAAACAAT-GGGCATTAAACCATA
1 AGTCAGAAAATG-AAAATGATCGAG-ATTAAATCACG
* * *
3281371 AGTCA-AAAAGTGAAAATGACCGAGATTAAACCATG
1 AGTCAGAAAA-TGAAAATGATCGAGATTAAATCACG
* * *
3281406 AGTCAAAAAATGAAAATGA-CTAGAATTAAATGACG
1 AGTCAGAAAATGAAAATGATCGAG-ATTAAATCACG
* *
3281441 AGTC-GAAAAATGAAAATGAT-TAGCATTAAATCACA
1 AGTCAG-AAAATGAAAATGATCGAG-ATTAAATCACG
* * * * * *
3281476 AGTTAAAGAAATAAAAATGA-CCAGAATCAAATCATG
1 AGTCAGA-AAATGAAAATGATCGAG-ATTAAATCACG
* * * *
3281512 AGTCAGAAAATAAAAACGA-CTGGGATTAAACCACTG
1 AGTCAGAAAATGAAAATGATC-GAGATTAAATCAC-G
* * * * *
3281548 -GTCAAAAAATGAAAACGATTG-GAATTAACTCACA
1 AGTCAGAAAATGAAAATGATCGAG-ATTAAATCACG
* * *
3281582 AGTCAAAAAAT-AAAATGATCGAAATTAAATCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* *
3281616 AGTCTA-AAAATGAAAACGA-CTAAGATTAAA-CGACG
1 AGTC-AGAAAATGAAAATGATC-GAGATTAAATC-ACG
* * * * * *
3281651 CGTCAAAAAATTAAAACGATAG-GTATTAAACCAC-
1 AGTCAGAAAATGAAAATGATCGAG-ATTAAATCACG
* * * *
3281685 AGGTCAAAAAATGAAAATGATCGAGATAAAACCACT
1 A-GTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * **
3281721 AGTCAGAAAATGAAAAATGATCGGGATTAAATTATA
1 AGTCAGAAAATG-AAAATGATCGAGATTAAATCACG
* * * * * *
3281757 AGTCAAAAAATGAAGA-CAACGAGGATTAAACCACA
1 AGTCAGAAAATGAAAATGATCGA-GATTAAATCACG
* *
3281792 AGTCAGAGAAATAAAAATGA-CTAGAATTAAATCACG
1 AGTCAGA-AAATGAAAATGATCGAG-ATTAAATCACG
* * * *
3281828 AGTTAGAAAATGAAAAGGATAG-GAATTAAACCACG
1 AGTCAGAAAATGAAAATGATCGAG-ATTAAATCACG
* * * **
3281863 AATCAAAAAATGAAAATGACCGAGATTAAATCAAA
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * *
3281898 AGTCAGAAAATAAAAATGATCAAGATTAAACCACG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * *
3281933 AGTCAAAAAATAAAAATGACCGGGATTAAATCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * *
3281968 AGTCAAAAAATGAAAATGATCGGGATTAAACCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * * * * *
3282003 GGTTAGAAAATGAAAACGAT-TAGAATTAAACCATG
1 AGTCAGAAAATGAAAATGATCGAG-ATTAAATCACG
* * * * * *
3282038 GGTTAGAAAATGAAAACGACCGAAATTAAATCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
* * **
3282073 AGTCATAAAATGAAAATGAT-TAGTATTAAATCATA
1 AGTCAGAAAATGAAAATGATCGAG-ATTAAATCACG
* * * * *
3282108 AGTCAAAGAAATAAAAATGATCGAAATTACATCATG
1 AGTCAGA-AAATGAAAATGATCGAGATTAAATCACG
* * * * * *
3282144 AGTCAGAAATTGGAAACGATCGAGATGAAACCATG
1 AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
3282179 AGTCAAGAAAA-GAAAA
1 AGTC-AGAAAATGAAAA
3282195 CGAGAATGAA
Statistics
Matches: 2423, Mismatches: 595, Indels: 420
0.70 0.17 0.12
Matches are distributed among these distances:
21 1 0.00
22 2 0.00
23 7 0.00
25 1 0.00
26 8 0.00
27 15 0.01
28 1 0.00
29 22 0.01
30 7 0.00
31 2 0.00
32 17 0.01
33 29 0.01
34 261 0.11
35 1592 0.66
36 408 0.17
37 6 0.00
38 7 0.00
39 2 0.00
41 7 0.00
42 1 0.00
43 4 0.00
47 6 0.00
48 4 0.00
49 9 0.00
50 3 0.00
51 1 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (35 bp):
AGTCAGAAAATGAAAATGATCGAGATTAAATCACG
Found at i:3281364 original size:106 final size:106
Alignment explanation
Indices: 3281194--3281997 Score: 423
Period size: 106 Copynumber: 7.6 Consensus size: 106
3281184 ATTAAACCAT
* * * * * *
3281194 GAGTCAGAAAATGAAAAATGACTAG-ACTATACCATGAGTCAAAAAGT-TAAAACGATCGGG-AT
1 GAGTCAAAAAATG-AAAATGACTAGAATTAAACGAAGAGTCAAAAAATGTAAAACGAT-GGGCAT
* *
3281256 TAAATCACGAGTCAAAAAATAAAAATGACAGGGACTAAACAAC
64 TAAATCACAAGTCAAAAAATAAAAATGACAGAGACTAAACAAC
* *
3281299 GCA-TCAAAAAATGAAAATGA-TAGGGATT-AACGCAAGAGTCAAAAAATGTAAAACAATGGGCA
1 G-AGTCAAAAAATGAAAATGACTA-GAATTAAACG-AAGAGTCAAAAAATGTAAAACGATGGGCA
* * * * * * * *
3281361 TTAAACCATAAGTCAAAAAGTGAAAATGACCGAGATTAAACCAT
63 TTAAATCACAAGTCAAAAAATAAAAATGACAGAGACTAAACAAC
* * * * **
3281405 GAGTCAAAAAATGAAAATGACTAGAATTAAATGACGAGTCGAAAAATG-AAAATGATTAGCATTA
1 GAGTCAAAAAATGAAAATGACTAGAATTAAACGAAGAGTCAAAAAATGTAAAACGATGGGCATTA
* *
3281469 AATCACAAGTTAAAGAAATAAAAATGACCAGA-A-TCAAATC-AT
66 AATCACAAGTCAAA-AAATAAAAATGA-CAGAGACT-AAA-CAAC
* * * * * * * * *
3281511 GAGTCAGAAAATAAAAACGACTGGGATTAAACCACTG-GTCAAAAAATG-AAAACGATTGGAATT
1 GAGTCAAAAAATGAAAATGACTAGAATTAAACGA-AGAGTCAAAAAATGTAAAACGATGGGCATT
* * * *
3281574 AACTCACAAGTCAAAAAAT-AAAATGATC-GAAATTAAATC-AT
65 AAATCACAAGTCAAAAAATAAAAATGA-CAGAGACTAAA-CAAC
* * * * * *
3281615 GAGTCTAAAAATGAAAACGACTA-AGATTAAACGACGCGTCAAAAAAT-TAAAACGATAGGTATT
1 GAGTCAAAAAATGAAAATGACTAGA-ATTAAACGAAGAGTCAAAAAATGTAAAACGATGGGCATT
* * * *
3281678 AAACCACAGGTCAAAAAATGAAAATGATC-GAGA-TAAAACCAC
65 AAATCACAAGTCAAAAAATAAAAATGA-CAGAGACT-AAACAAC
* * * * ** *
3281720 TAGTCAGAAAATGAAAAATGA-TCGGGATTAAATTATA-AGTCAAAAAATGAAGACAACGA--GG
1 GAGTCAAAAAATG-AAAATGACT-AGAATTAAACGA-AGAGTCAAAAAATGTA-A-AACGATGGG
* * *
3281781 -ATTAAACCACAAGTCAGAGAAATAAAAATGACTAGA-ATTAAATC-AC
61 CATTAAATCACAAGTCA-AAAAATAAAAATGAC-AGAGACTAAA-CAAC
* * * * * * * * *
3281827 GAGTTAGAAAATGAAAAGGA-TAGGAATTAAACCACGAATCAAAAAATG-AAAATGACCGAG-AT
1 GAGTCAAAAAATGAAAATGACTA-GAATTAAACGAAGAGTCAAAAAATGTAAAACGA-TGGGCAT
* * * *
3281889 TAAATCAAAAGTCAGAAAATAAAAATGATCA-AGATTAAACCAC
64 TAAATCACAAGTCAAAAAATAAAAATGA-CAGAGACTAAACAAC
* ** * * *
3281932 GAGTCAAAAAATAAAAATGACCGGGATTAAATC-ATGAGTCAAAAAATG-AAAATGATCGGG-AT
1 GAGTCAAAAAATGAAAATGACTAGAATTAAA-CGAAGAGTCAAAAAATGTAAAACGAT-GGGCAT
3281994 TAAA
64 TAAA
3281998 CCATGGGTTA
Statistics
Matches: 554, Mismatches: 100, Indels: 90
0.74 0.13 0.12
Matches are distributed among these distances:
103 9 0.02
104 97 0.18
105 157 0.28
106 239 0.43
107 42 0.08
108 5 0.01
109 5 0.01
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (106 bp):
GAGTCAAAAAATGAAAATGACTAGAATTAAACGAAGAGTCAAAAAATGTAAAACGATGGGCATTA
AATCACAAGTCAAAAAATAAAAATGACAGAGACTAAACAAC
Found at i:3281740 original size:316 final size:315
Alignment explanation
Indices: 3281059--3282152 Score: 874
Period size: 316 Copynumber: 3.5 Consensus size: 315
3281049 AATGTGAGTT
* * * * * * * *
3281059 AAAAAATGAAAACGA-CTGAAATTAAAGCACGAGTCAGAAAATGAAAATGACTAGGACTAAACCT
1 AAAAAATGAAAATGATC-GAGATTAAACCATGAGTCAGAAAATGAAAATGACTAGAATTAAATCA
* * ** * * * * * *** ** *
3281123 TGAGTGAGGAAATGAAAACCACTAGGATTAAACCACGAGTCAAA-AAATGAAAGCAATTAGGATT
65 TGAGTCA-AAAATGAAAATGATTAGCATTAAATCACAAGTCAAAGAAATAAAAATGACCAGAATT
* * * * * * * * *
3281187 AAACCATGAGTCAGAAAATGAAAAATGACTA-G-ACTATACCATGAGTCAAAAAGTTAAAACGAT
129 AAATCATGAGTCAGAAAAT-AAAAACGA-TAGGAATTAAACCACGAATCAAAAAATGAAAACGAC
* ** * * * *
3281250 CGGGATTAAATCACGAGTCAAAAAATAAAAATGA-CAGGGACTAAACAACGCA-TCAAAAAATGA
192 CGAGATTAAATCAAAAGTCAAAAAATAAAAATGATCA-AGATTAAACCACG-AGTCAAAAAATAA
* * * ** * * * *
3281313 AAATGA-TAGGGATTAACGCAAGAGTCAAAAAATGTAAAACAATGGGCATTAAACCATAAGTC
255 AAACGACCA-AGATTAAATCACGAGTCAAAAAAT-TAAAACGATAGGCATTAAACCATAGGTC
* * * * *
3281375 AAAAAGTGAAAATGACCGAGATTAAACCATGAGTCAAAAAATGAAAATGACTAGAATTAAATGAC
1 AAAAAATGAAAATGATCGAGATTAAACCATGAGTCAGAAAATGAAAATGACTAGAATTAAATCAT
* *
3281440 GAGTCGAAAAATGAAAATGATTAGCATTAAATCACAAGTTAAAGAAATAAAAATGACCAGAATCA
66 GAGTC-AAAAATGAAAATGATTAGCATTAAATCACAAGTCAAAGAAATAAAAATGACCAGAATTA
* * **
3281505 AATCATGAGTCAGAAAATAAAAACGACT-GGGATTAAACCACTG-GTCAAAAAATGAAAACGATT
130 AATCATGAGTCAGAAAATAAAAACGA-TAGGAATTAAACCAC-GAATCAAAAAATGAAAACGACC
* * * * * *
3281568 G-GAATTAACTCACAAGTCAAAAAAT-AAAATGATCGAA-ATTAAATCATGAGTCTAAAAATGAA
193 GAG-ATTAAATCAAAAGTCAAAAAATAAAAATGATC-AAGATTAAACCACGAGTCAAAAAATAAA
* * * *
3281630 AACGACTAAGATTAAA-CGACGCGTCAAAAAATTAAAACGATAGGTATTAAACCACAGGTC
256 AACGACCAAGATTAAATC-ACGAGTCAAAAAATTAAAACGATAGGCATTAAACCATAGGTC
* * *
3281690 AAAAAATGAAAATGATCGAGATAAAACCACT-AGTCAGAAAATGAAAAATGA-TCGGGATTAAAT
1 AAAAAATGAAAATGATCGAGATTAAACCA-TGAGTCAGAAAATG-AAAATGACT-AGAATTAAAT
* * * ** ** * * * *
3281753 TATAAGTCAAAAAATGAAGACAACGAGGATTAAACCACAAGTCAGAGAAATAAAAATGACTAGAA
63 CATGAGTC-AAAAATGAAAATGATTAGCATTAAATCACAAGTCAAAGAAATAAAAATGACCAGAA
* * * * *
3281818 TTAAATCACGAGTTAGAAAATGAAAAGGATAGGAATTAAACCACGAATCAAAAAATGAAAATGAC
127 TTAAATCATGAGTCAGAAAATAAAAACGATAGGAATTAAACCACGAATCAAAAAATGAAAACGAC
*
3281883 CGAGATTAAATCAAAAGTCAGAAAATAAAAATGATCAAGATTAAACCACGAGTCAAAAAATAAAA
192 CGAGATTAAATCAAAAGTCAAAAAATAAAAATGATCAAGATTAAACCACGAGTCAAAAAATAAAA
* ** * * * * * * *
3281948 ATGACCGGGATTAAATCATGAGTCAAAAAATGAAAATGATCGGGATTAAACCATGGGTT
257 ACGACCAAGATTAAATCACGAGTCAAAAAATTAAAACGATAGGCATTAAACCATAGGTC
* * * * * * *
3282007 AGAAAATGAAAACGAT-TAGAATTAAACCATGGGTTAGAAAATGAAAACGAC-CGAAATTAAATC
1 AAAAAATGAAAATGATCGAG-ATTAAACCATGAGTCAGAAAATGAAAATGACTAG-AATTAAATC
* * *
3282070 ATGAGTCATAAAATGAAAATGATTAGTATTAAATCATAAGTCAAAGAAATAAAAATGATC-GAAA
64 ATGAGTCA-AAAATGAAAATGATTAGCATTAAATCACAAGTCAAAGAAATAAAAATGACCAG-AA
*
3282134 TTACATCATGAGTCAGAAA
127 TTAAATCATGAGTCAGAAA
3282153 TTGGAAACGA
Statistics
Matches: 621, Mismatches: 130, Indels: 54
0.77 0.16 0.07
Matches are distributed among these distances:
315 68 0.11
316 362 0.58
317 188 0.30
318 3 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (315 bp):
AAAAAATGAAAATGATCGAGATTAAACCATGAGTCAGAAAATGAAAATGACTAGAATTAAATCAT
GAGTCAAAAATGAAAATGATTAGCATTAAATCACAAGTCAAAGAAATAAAAATGACCAGAATTAA
ATCATGAGTCAGAAAATAAAAACGATAGGAATTAAACCACGAATCAAAAAATGAAAACGACCGAG
ATTAAATCAAAAGTCAAAAAATAAAAATGATCAAGATTAAACCACGAGTCAAAAAATAAAAACGA
CCAAGATTAAATCACGAGTCAAAAAATTAAAACGATAGGCATTAAACCATAGGTC
Found at i:3282196 original size:35 final size:36
Alignment explanation
Indices: 3281017--3328546 Score: 3713
Period size: 35 Copynumber: 1341.7 Consensus size: 36
3281007 GAATTAAATT
* * **
3281017 ATGAGTCAA-AAATTGAAAATGA-CCATGATTAAAAT
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3281052 GTGAGTTAA-AAAATGAAAACGA-CTGAAATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3281087 ACGAGTC-AGAAAATGAAAATGA-CTAGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * ** *
3281122 TTGAGT-GAGGAAATGAAAACCA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *** *
3281157 ACGAGTCAA-AAAATGAAAGCAAT-TAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3281192 ATGAGTC-AGAAAATGAAAAATGA-CTAGACTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * * *
3281227 ATGAGTCAA-AAAGTTAAAACGATCGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3281262 ACGAGTCAA-AAAATAAAAATGA-CAGGGACTAAACA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3281297 ACGCA-TCAA-AAAATGAAAATGATAGGGATT-AACGC
1 ATG-AGTCAAGAAAATGAAAATGATCGAGATTAAAC-C
* ** *
3281332 AAGAGTCAA-AAAATGTAAAACAAT-GGGCATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAG-ATTAAACC
* * *
3281368 ATAAGTCAA-AAAGTGAAAATGACCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* **
3281403 ATGAGTCAA-AAAATGAAAATGA-CTAGAATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3281438 ACGAGTCGA-AAAATGAAAATGAT-TAGCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * * *
3281473 ACAAGTTAA-AGAAATAAAAATGA-CCAGAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* * *
3281509 ATGAGTC-AGAAAATAAAAACGA-CTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3281544 ACTG-GTCAA-AAAATGAAAACGATTG-GAATT-AACTC
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAAC-C
** * *
3281579 ACAAGTCAA-AAAAT-AAAATGATCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3281613 ATGAGTCTA-AAAATGAAAACGA-CTAAGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3281648 ACGCGTCAA-AAAATTAAAACGATAG-GTATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* *
3281683 A-CAGGTCAA-AAAATGAAAATGATCGAGATAAAACC
1 ATGA-GTCAAGAAAATGAAAATGATCGAGATTAAACC
* **
3281718 ACT-AGTC-AGAAAATGAAAAATGATCGGGATTAAATT
1 A-TGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * *
3281754 ATAAGTCAA-AAAATGAAGA-CAACGAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * *
3281789 ACAAGTC-AGAGAAATAAAAATGA-CTAGAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* * * *
3281825 ACGAGT-TAGAAAATGAAAAGGATAG-GAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3281860 ACGAATCAA-AAAATGAAAATGACCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * *
3281895 AAAAGTC-AGAAAATAAAAATGATCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3281930 ACGAGTCAA-AAAATAAAAATGACCGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3281965 ATGAGTCAA-AAAATGAAAATGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3282000 ATGGGT-TAGAAAATGAAAACGAT-TAGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * * *
3282035 ATGGGT-TAGAAAATGAAAACGACCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3282070 ATGAGTC-ATAAAATGAAAATGAT-TAGTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3282105 ATAAGTCAA-AGAAATAAAAATGATCGAAATTACATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * * *
3282141 ATGAGTC-AGAAATTGGAAACGATCGAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3282176 ATGAGTCAAGAAAA-GAAAACGAGAAT-GAAAATTATCGAA--
1 ATGAGTCAAGAAAATGAAAA--TG-ATCG-AGATTA---AACC
* * * * * *
3282215 ATTAAATTACGAGTAAAA--AAAATGACCTAGATTAAAAC
1 A-T-GAGT-CAAG-AAAATGAAAATGATCGAGATTAAACC
* * **
3282253 ATGAGTTAA-AAAATGAAAATGA-CCAGAATTAAAGT
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * *
3282288 ATGA-TCAA-AAAATGAAAAT-AACTGGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * ** *
3282322 CTGAGT-GAGAAAATGAAAACCAT-TAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* ** * ***
3282357 ATGAGTCAA-AAAATTAAAACAATCGGGATTAAGTG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3282392 ATGAGTCAA-AAAATGAAAAATGA-CTGGGATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
* * ** *
3282428 ATGAGTCAA-AAAATGAAAATGA-CCAGGGTTGTATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3282463 ACGAGTCAA-AAAATAAAAATGA-CAGGGATTAAACAAC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAAC--C
* * * **
3282500 A-CA-T-TAGAAAATGAAAATGA-CAGGGATTAAAGG
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3282533 ATGAGTCAAAAAAATGTAAAA-CAACAAGGATTACACC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
** * *
3282570 ACAAGTCAA-AAAAGTGAAAATGACCGTGATTAAACC
1 ATGAGTCAAGAAAA-TGAAAATGATCGAGATTAAACC
** * * *
3282606 ACAAGTC-AGAAAATGAAAATGA-CCAGTATCAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* ** * * * *
3282641 ATGAGTCAA-AGAAATAAAAACAACCGAAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* *
3282677 ACGAGTCAA-AAAATGAAAATGA-CTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3282712 TTTAGTCAA-AAAATGAAAATGATC-AGAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3282747 ATAAGT-TAGAAAAT-AAAATGACCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** *
3282781 ATGAGTTTA-AAATTGAAAATGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3282816 ACGAGTCAGAAAATTAAAACGACTGAAAATGACCAAAATTAAATC
1 ATGAGTC----AA--GAAA--A-TGAAAATGATCGAGATTAAACC
* * * * * *
3282861 ATAAGT-TAGAAAAT-AAAATGACCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** *
3282895 ATGAGTTTA-AAATTGAAAATGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3282930 ACGAGTC-AGAAAATTAAAATGA-CAAGGATTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *
3282964 ACT-AGTC-A-AAAATGAAAAAATGAACCAGGATTAAACC
1 A-TGAGTCAAGAAAATG--AAAATGATCGA-GATTAAACC
* * * *
3283001 A-CAAT-TAGAACAATGAAGAA--A-CAGGGATT-AACC
1 ATGAGTCAAGAA-AATGAA-AATGATC-GAGATTAAACC
* *** * * * * * *
3283034 ACGAGTTGGGAGAAATAAAAATCACCAAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATC-GAGATTAAACC
** * * * *
3283072 ACAAGTC--GTCAAA-GAAAAGGTTGGTA-ATTTAAACCC
1 ATGAGTCAAG-AAAATGAAAATGATCG-AGA-TTAAA-CC
* *
3283108 ATGAGTCAA-AAAATGAAAACGATCGAGATTTAACTC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAAC-C
* ** * * * *
3283144 ACGGAGTCAA-AAAGAT-AAAAACAACCAAAGTTAAATC
1 A-TGAGTCAAGAAA-ATGAAAATGATCGAGA-TTAAACC
* **
3283181 ATTAAGTC-AGAAAAATG-AAATGA-C-AGGGTATAA-C
1 A-TGAGTCAAG-AAAATGAAAATGATCGAGATTA-AACC
* * *
3283215 ATCGGGTC-A-AAAATGAAAA-CATTCGAGATTAAATC
1 AT-GAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
*
3283250 A-GAGTGC-AGAAAATAGAAAATGATTCAAAGATTAAAACC
1 ATGAGT-CAAGAAAAT-GAAAATGA-TC-GAGATT-AAACC
* * **
3283289 ATGAGTGCAATAAATGAAAACAAAATGAAAATTATTG-GACTTAAATT
1 ATGAGT-C----AA-G-----AAAATGAAAATGATCGAGA-TTAAACC
** * * * *
3283336 ACAAGTC-AGCAAATGAAAATGA-CTGGGAGTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3283371 ATGAGTTAA-AAAATTAAAACGA-CTAGAATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3283406 ATGAGTC-AGAAAATGAAAACGATTGGGACTAAACCC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAA-CC
* ** *
3283442 A-GAGT-GAGAAAATGAAAACCA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** ** * **
3283476 ACAAGTC-AGAAAATGAAAGCGATTGAGATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3283511 ATGAGTCAA-AAAATGAAAAACGACCAATATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* ** *
3283547 ATGAGTCAA-AAAATAAAAACT-ATCGAGAGAAAACA
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* ** * * **
3283582 ATAGGGATTAAAGCACAAGTCAAAAAATGTAAAACAATAGGGATTACGCC
1 AT---G-----AG-TCAAG---AAA-ATG-AAAATGATCGAGATTAAACC
* * *
3283632 ACGAGTCAA-AAAGTGAAAATGA-CTAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** ** * * * *
3283667 ACAAGTCAA-AAAATGAAAACAACCAAAATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * **
3283702 ACGAGTTAA-AAAATGAAAATGATTGACATTAAGTC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3283737 ACGAGTCAATG-AAAT-AACAATG-GCCATAGTCAAATC
1 ATGAGTCAA-GAAAATGAA-AATGATCGAGA-TTAAACC
*
3283773 ATGAGTCAA-AAAATGAAAATGGTC-AGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *
3283808 ACT-AGTCAA-AAAATGAAAATGATC-AAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3283842 ATGAGTTGA-AAAAT-AATAATTATCGAAATTAAATC
1 ATGAGTCAAGAAAATGAA-AATGATCGAGATTAAACC
* * * *
3283877 ATGAGTCTA-AAACTGAAAATTA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* ** * *
3283912 ATGAGT-TAGAAAATGAAAACAATTGAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** *
3283947 ACT-AGTCAA-AAAATGAAAAACAATCAAGATTAAACC
1 A-TGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * *
3283983 ACT-AGTCAA-AAAATGAAGA-CAACGGGGATTAAAACC
1 A-TGAGTCAAGAAAATGAAAATGATC-GAGATT-AAACC
* * * * * * *
3284019 TTGAGT-TAGAGAAATAAAAATGACCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * *
3284055 ATGAGT-TAGAATATGAAAATGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3284090 ATGAGT-TTGAAAATGAAAACGACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3284125 ATGA-TCAA-AAAATAAAAATG-TCTAGGATTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3284158 ATGAGTCAA-AAAATAAAAATGACTTG-GATTAAATC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * **
3284193 ACGAGTC-AGAAAATGAAAACT-A-CTAGATTAAATA
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* *
3284227 AT-AGGTCAA-AAAATGAAAACGATCGGGATTAAACC
1 ATGA-GTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * ** * *
3284262 TTGGGT-TAGAAAATGAAAGCGA-CTAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * * *
3284297 ACGACT-TAGAAAATGAAAACGATC-AGTTTTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * ** * * *
3284332 ACAACTC-AGAGAAATAAAAACAATTGAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
** * *
3284368 ACAAGTCAA-AAAATGAAAAATGTTTGAGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * * **
3284404 ATGAGTTAGGAAATGAAAATGATAATGAAAATTATCAAAATTAAATT
1 ATGAG-T---CAA-G---A--A-AATGAAAATGATCGAGATTAAACC
* * *
3284451 ATGAGT-TAGAAAATGAAAATGATCAAGATTAAA-A
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3284485 ATCGAGTTAA-AAAATGAAAATGACTGGA-ATTAATGC
1 AT-GAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * *
3284521 ATGAGTC-AGAAAATGAAAACGA-CTAGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * ** *
3284556 TTGAG-AAAGAAAATGAAAACCA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3284591 ACGAGT-TAGAAAATGAAAGTGATCAAGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** ** * * *
3284626 ACAAGTCAA-AAAATGAAAAAAAACTAGGATTATACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* ** * * **
3284662 ATGAGTCAA-AAAACGAAAACAACCAAGATTAATTC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3284697 ATGAGTCAA-AAAATCAAAATGA-CAAGCATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3284732 ATGTGTCAA-AAAATGAAAACGACCGGGATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3284767 ATGACACAA-AAAATGTAAAA-CAACGGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
* * *
3284803 ATAAGTCAA-AAAGTGAAAATGATTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * **
3284838 ACAAGTCAA-AATATGAAAATGA-CTAAAATT-AATG
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* **
3284872 ATGAGTCAA-AAAATGGAAATGA-CG-GCATTAAATT
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * **
3284906 ACGAGCCAA-AGAAAT-AAAATGATCG-GAATCAAATT
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* * *
3284941 ATGAGT-TAGAAAATAAAAATGACCGAGATTCAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATT-AAACC
* * * *
3284977 ACT-AGGT-AAAAAAATGAAAACGAACTG-GAATTAAATC
1 A-TGA-GTCAAGAAAATGAAAATGATC-GAG-ATTAAACC
** * ** * * *
3285014 ACAAGTCAA-AATACAAAAATGATGGA-AATAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3285048 ATGAATC--TAAACT-AAAACGA-CTGGGATTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * ** * *
3285080 ACG-TTCAA-AAAATCACAACAATAGGGA-TAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3285113 ATG-GT-TAGAAAATGAAAATGACCAAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3285147 ACCAGT-TAGAAAATGAAAACGATC-AGGATTACAACT
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTA-AACC
* * * **
3285183 ACGAGT-TAGAAAATGAAGACAAT-G-GATTAGAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTA-AACC
* * *
3285217 ATGAG-CTTAGAGAAATAAAAATGACAATC-A-ATTAAATC
1 ATGAGTC-AAGA-AAATGAAAATG---ATCGAGATTAAACC
** * *
3285255 AAAAGTC-AGAAAATG-AAATCGATAGGAAATT-AACC
1 ATGAGTCAAGAAAATGAAAAT-GAT-CGAGATTAAACC
* * * *
3285290 ATGAGTC--GAAAATTAAAAACGA-CTGGGATTAAATC
1 ATGAGTCAAGAAAA-TGAAAATGATC-GAGATTAAACC
* *
3285325 ATGAGT-AATAAAAATGAAAATGATCAAGATTAAACC
1 ATGAGTCAA-GAAAATGAAAATGATCGAGATTAAACC
* * * *
3285361 ATG-GTC-AGAAAATGAAAA-CAACTGGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3285395 ATGGGT-TAGAAAATGAAAATGACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3285430 ACGAGTC-ATAAAATGAAAATGATCAATATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * ** * *
3285465 ACAAGTCAA-AGAAATAAAAATGATAAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
** * *
3285501 ACAAGTC-AGAAAATGAAAACGATCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * **
3285536 ATGAGTC-AGGAAATGAAAATGATAATGAAAATTATTGGAATTGA
1 ATGAGTCAAGAAAATGAAAATGAT--CG-AGATTA----AA--CC
* * **
3285580 ATTACGAGTC-AGAAAATGAAAATGATTGGGAGTTTTA-C
1 A-T--GAGTCAAGAAAATGAAAATGATCGAGA-TTAAACC
* * * * *
3285618 ATGAGTTAA-AAAATGAAAA-CAACCAGAATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * *
3285653 ACAAGTCAA-AAAATGAAAATGA-CTGGGACTAAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGA-TTAAACC
* * ** * *
3285689 -T-CGT-GAGAAAATGAAAACCACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *** * *
3285722 ATGAGT-GAGAAAATGAAAGCAAT-TAGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3285757 ACGAGTC-AGAAAATGAAAAACGACCGAGATTATACT
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * * *
3285793 GTGAATCAA-AAAATGAAAAGGA-CTGTGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3285828 ATAAGTCAA-AAAATAAAAATGAT-AAGGATTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * **
3285862 AT--GTCAA-AAAATGAAAACGA-CAGGGATTAAAGT
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3285895 A-GAAGTCAA-AAAATGTAAAA-CAACGAGAATTAAACT
1 ATG-AGTCAAGAAAATG-AAAATGATCGAG-ATTAAACC
** **
3285931 ACAAGTCAA-AAGGTGAAAATGA-CTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * **
3285966 A-CATGT-TAGAAAATGAAAATGATCAAAATTAAATG
1 ATGA-GTCAAGAAAATGAAAATGATCGAGATTAAACC
** * *
3286001 AAAAGTCAA-AAAATGAAAATGATTG-GCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * * * *
3286036 ACGTA-TCAA-AGAAATAAAAATGACCAAAATCAAATC
1 ATG-AGTCAAGA-AAATGAAAATGATCGAGATTAAACC
**
3286072 ACAAGTCAA-AAAATGAAAATGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3286107 ACT-AGTCAA-AAAGTGAAAATGATCGAAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * ** * * *
3286142 ACAAGTCAA-AAAATAAAAATGGCCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * * *
3286177 ATGAGTC-TGGAACTGAAAATGACCTACATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3286212 ACT-AGT-AAGAAAATAAAAAATGATCGAGATTAAACC
1 A-TGAGTCAAGAAAAT-GAAAATGATCGAGATTAAACC
* * * * *
3286248 ACGAGTCAA-AAAATGAAGA-CAACAGCGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3286283 ATGAGT-TAGAGAAATAAAAATGAAC-AGAATTAAATCAC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAA-C-C
* * * *
3286321 AT--GTC-AGAAAATTAAAAGGATAG-GAATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3286354 ATGAGT-TAGAAAATGAAAACGA-CTAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3286389 ACGAGTC-AGAAAATAAAAATGA-CCAGGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *
3286424 ATGATTCAA-AAAATGAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3286459 ATGGGT-TAGAGAATGAAAAAGATC-AGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3286494 ATGGGT-TAGAAAATGAAAACGAAT-GAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATG-ATCGAGATTAAACC
*
3286529 ATGAGTCAA-AAAATGAAAATGATCG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3286564 ACAAGT-TAGAGAAATAAAAATGATC-ACAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGA-GATTAAACC
* * *
3286600 ACGAGTCAA-AAAATGAAAACGATCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * * **
3286635 ACGAGTCAGGAAATAAAAATGATAGTGAAAATTACTAAAATTAAATT
1 ATGAGTC----AA-GAAAATGAAAATG---A-T-C-GAGATTAAACC
* *
3286682 ATGAGTCAA-AAAATAAAAAT-AACTGAGATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * **
3286715 ATGCAAGTTAA-AAAATGAAAACGA-CTAGAATTAAAGG
1 ATG--AGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3286752 ATGAGT-TAGAAAATGAAAATGATTGGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** *
3286787 TTGAGT-GAGAAAATGAAAACCAAC-AGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3286822 ACGAGT-TAGAAAATGAAAGTGATATG-GATTAAACA
1 ATGAGTCAAGAAAATGAAAATGAT-CGAGATTAAACC
* * * * *
3286857 ATGAGTC-AGAAAATGTCAAACGATAGGGATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * *
3286893 ACGAGTC-AGAAAATGAAAATGA-CTGGGATTGAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3286928 ATGAGTCAA-AACAT-AAACATGA-CAGGGATTAAACA
1 ATGAGTCAAGAAAATGAAA-ATGATC-GAGATTAAACC
* * * *
3286963 ACGTA-T-AGGAAAATGAAAATGA-CAGGGATTAAAGC
1 ATG-AGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3286998 ATGAGTC-AGAAAATATAAAAT-AACAAGGATTAAACC
1 ATGAGTCAAGAAAAT-GAAAATGATCGA-GATTAAACC
** * *
3287034 ACAAGTC-A-AAAGTGAAAATGACCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3287068 ATGAGT-TAGAAAATGAAAATGA-CCAGAATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * ** *
3287103 ATGAGTTAA-AAAAAGAAAAAAATCG-GCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3287138 ATGAGTCAA-AGAAATAAAAATGACTGGA-ATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGA-TCGAGATTAAACC
* *
3287174 ACGAGTCAA-AAAATGAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3287209 ACT-TGTCAA-AAAATGAAAATGACCGAAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3287244 ATGAGTCAA-AAAATAAAAATGACCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * *
3287279 ATGAGTGTA-AAACTAAAAACGATCGGGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3287314 ACGAGTCAA-AAAATTAAAAACGATAGGGATTAAAGC
1 ATGAGTCAAGAAAA-TGAAAATGATCGAGATTAAACC
* * ** *
3287350 ACGAGT-TAGAAAATGAAAACAATCGAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3287385 ATCAGTC-AGAAAATGAAAAATGATCGAGGTTAAGCC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
** * ** *
3287421 ACAAGTCAA-AAAATGAAGACAATGGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3287456 ATGAGTC-AGAGAAATAAAAATGA-CCATAATTAAACC
1 ATGAGTCAAGA-AAATGAAAATGATCGA-GATTAAACC
* *
3287492 ATGAGTC-AGAAAAATGAAAAGGAT-GGGAATTAGATCATGACC
1 ATGAGTCAAG-AAAATGAAAATGATCGAG-ATT--A--A--ACC
* * * * *
3287534 AAGAGTC-TGAAAATGAAAATGACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3287569 ATGAGT-TAG-AAATTAGAAATGACCAAGATTAAA-C
1 ATGAGTCAAGAAAATGA-AAATGATCGAGATTAAACC
* * * *
3287603 ATGAGTCAA-AAAATAAAAATGA-CACAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3287638 ATGAGTTAA-AAAATGAAAATGACCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3287673 ATGGGTC-ATAAAATGAAAATGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3287708 TTG-GTTAA-AAAAGTGAAAATGATTGAGATTAAATC
1 ATGAGTCAAGAAAA-TGAAAATGATCGAGATTAAACC
* * ** * * *
3287743 ACGAGT-TAGAAAATGAAAAAAACTCAATATTAAATC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * * * * *
3287779 ATAAG-CCAGAGAAATAAAAATGATCCAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * **
3287815 ATGAGT-TAGAAAATGAAAATGA-CTGAGATCAAAAT
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * * **
3287850 ACGAGTTAAAAAAATGAAAACGA-CTGAAATTAAAGT
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * ** * *
3287886 A-CAATTTAGAAAATGAAAATGACTGGA-ACTAAACC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * * *
3287921 ATGAGT-GAGAAAATGAAAACTGCTAG-GATTAAATC
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* * **
3287956 ATGAGTC-AGAAAAT-AAAAGCGATCGGGATTAAATG
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* * * *
3287991 ACGAGTCAA-AAAATGAAAACGATCGGGATTATACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3288026 ATGACTC-A-AAAATAAAAATGA-CTGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3288060 ACGAGTCAA-AAAATAAAAATGATAGGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3288095 AT-CG-CAAGAAAATGAAAATGGCAT-G-GATTAAAGC
1 ATGAGTCAAGAAAATGAAAAT-G-ATCGAGATTAAACC
* * * ** **
3288129 ACGAGTC-AGAAAATTTAAAA-CAAGGAGGAACAAAACC
1 ATGAGTCAAGAAAA-TGAAAATGATCGA-G-ATTAAACC
** * * *
3288166 ACAAGTTAA-AAAGTGAAAATGACCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3288201 ATGAGT-AAGAAAATGAAAATGAT-TAGAATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * *
3288236 ACGAGTTAA-AAAATGAAAATGA-CTG-GCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAG-ATTAAACC
* * * * *
3288271 ATGAGTCAA-AGAAAT-AAAATGACCAAAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * *
3288306 ACGAGTCAA-AAAATGAAAATGA-CTAGAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * * * * *
3288341 ACAAGTC-ATAAAATAAAAATTACCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * *
3288376 ACAAGTCTA-AAACTAAAAACGAT-TACGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3288411 ATGAGTC-AGAAAATTAAAACGA-CAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3288446 ATGACT-TAGAGAAAT-AAAATGACCGTA-ATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCG-AGATTAAACC
* * * *
3288481 ACGAGT-TAGAGAAATAAAAATGATCGTA-ATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCG-AGATTAAACC
* * *
3288517 ATGAGTCAA-AAAATGAAAAGGAT-GGGAATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* *
3288552 ATGAGTC-AGAAAATGAAAATGA-CTAGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3288587 ACGAGT-TAGAAAAT-ACAAACGA-CTAAGATTAAACC
1 ATGAGTCAAGAAAATGA-AAATGATC-GAGATTAAACC
* * *
3288622 ACGAGTC-AGAAAATAAAAATGA-CTAGGATT-AACTC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAAC-C
** * * * * *
3288657 ACAAGT-TAGAAAATGAAAA-CAACCAGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
*
3288692 ----GTCAA-AAAATAAAAATGA-CTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * * *
3288723 ATGGGTTAA-AAAATGAAAA-CAACTGAGAATAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3288758 ATGAGT-TAGAAAATGAAAACGATCG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3288793 ACAAGT-TAGAGAAATAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* ***
3288829 ACGAGTCGAA-AAAA-GAAAGCAATCGAGATTAAACC
1 ATGAGTC-AAGAAAATGAAAATGATCGAGATTAAACC
** * **
3288864 ACAAGTCAAGAAACAAAATGATAATGAAAATTATCG-GAATTAAATT
1 ATGAGTCAAG-------A--A-AATGAAAATGATCGAG-ATTAAACC
* * *
3288910 ATGAGTCAA-AAAATGAAAATGACCTAGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3288945 ACAAGTTAA-AAAATGAAAATGATCAAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3288980 ACGAGTCAA-AAAATGAAAATGA-CTAGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * ** *
3289015 CTGAGT-GAGAAAATGAAAACCA-CTAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * * *
3289050 ATGAGTCAA-AAAATGAAAGCGATTGAAATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3289085 ATGAGTCAA-AAAATGAAAAACGATCAAGATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * * *
3289121 ACGAGTCAA-AAAATGAAAA-CAACCAGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3289156 ACGAGTCAA-AAAAT-AAAATG-GCAGGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3289190 ATGCA-TCAA-AAAATGAAAATAATAGGGATTAAAGC
1 ATG-AGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * * *
3289225 ACGAGTCAA-AAAATGTAAAACAATAGGGGTTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
** * *
3289261 ACAACTCAA-AAAGTGAAAATGA-CTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3289296 AAGAGT-TAGAAAATGAAAATGA-CTAGAATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * *
3289331 ACGAGTCAA-AAAATGAAAATGATTG-GCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * *
3289366 ATGAGTCAA-AGAAA--AAAATGATTG-GAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
*
3289400 ACGAGTCAA-AAAAT-AAAATTGA-CTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAA-TGATC-GAGATTAAACC
* * * * * * *
3289435 ACT-ACT-TACAAAAT-TAAACGAT-TAGAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3289469 ATGAGTCAA-AAAATCAAAATGACCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * *
3289504 ACAAGTCTA-AAACTAAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3289539 ATGAGT-TAGAAAATTAAAATGA-CAAGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *
3289574 ACGAGTC-AG-AAATGAAAATGA-CAGAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** *
3289608 ACT-AGTC-AGAAAATGAAAAACAATCGGGATTAAACC
1 A-TGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * *
3289644 ATGAGTCAA-AAAAT-AAAGA-CAACAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAA-ATGATC-GAGATTAAACC
* * * *
3289679 ATGAGTC-AGAGAAATAAAAATGA-CTAGAATTAGATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
** * *
3289715 ACAAGTCAA-AAAATGAAAAGGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* ** * * *
3289750 ATGATTC-AGAAAATGAAAACAACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3289785 ACGAGTTAA-AAAATAAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* ** * * *
3289820 ATGAGTCAA-AAAATAAAAACAACCTAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3289855 ATGAGTC-AGAAAATAAAAATGA-CTGGGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3289890 ATGGGTCAA-AAAATGAAACT-AACTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *
3289925 ATG-GGCTAGAAAATGAAAACT-A-CTGAGATTAAATCAC
1 ATGAGTCAAGAAAATGAAAA-TGATC-GAGATTAAA-C-C
* * *
3289962 AT--CTCAA-AAAATGAAAATGATCGATATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * *
3289995 ACAAGT-TAGAGAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* *
3290031 ACGAGTC-AGAAAATGAAAATGATCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * **
3290066 -TCAAGTCAGGAAATAAAAATGATAATGAAAATTACCGAAATTAAATT
1 AT-GAGTC----AA-GAAAATGAAAATG---A-T--CGAGATTAAACC
* * *
3290113 ATGAGTCAA-AAAATGAAAATAATGGGGATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * **
3290146 ATGCTAGTTAAG-AAATGAAAACGA-CTAGAATTAAAGT
1 ATG--AGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3290183 ACAAGTC-AGAAAATGAAAACGATTGTGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * *
3290218 TTGAGT-GAGAAAATGAAAACCACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * ** * **
3290253 ACGAGT-TAGAAAGTGAAAGCGATTGAGATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3290288 ATAAGTCAA-AAAATGAAAA--ACTACTGAGAATATACC
1 ATGAGTCAAGAAAATGAAAATGA-T-C-GAGATTAAACC
* * * *
3290324 ACGAGTCAA-AAATTGAAAATGATCGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3290359 ATGAGTCAA-AAAATAAAAATGA-CAGGGATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3290394 ATGTGTCAA-AAAATGAAAATGA-CAAGGATTAGAGC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** *
3290429 ATGAGTC-AGAAAATGTAAAACAAT-GGGTATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAG-ATTAAACC
** * * * *
3290465 ACAAGTCAA-AAAGTGAAAATGGTTGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * * * **
3290500 GTGAGTC-AGAAAATGAAAACAACCAAAATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3290535 ATGAG-CTAA-AAAATAAAAATGACTTG-CACTAAATC
1 ATGAGTC-AAGAAAATGAAAATGA-TCGAGATTAAACC
* * *
3290570 ATGAGTCAAAGAAACA--AAAATGATCGAAATCAAATC
1 ATGAGTC-AAGAAA-ATGAAAATGATCGAGATTAAACC
* * * *
3290606 ACGAGTC-AGAAAATAAAAATGAACGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * ** * **
3290641 ACAAGCCAA-AAAACAAAAATGAT-TAGAATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3290676 ATGAGTC-AGAAAATAAAAATGACCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3290711 ACGAGTCTA-AAATTGAAAACGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3290746 ATGAGTCAA-AAAATGAAGA-CAACGGGGCTTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * * *
3290781 ATGACTCACAG-AAATAAAAATGACCAAAATTAAATC
1 ATGAGTCA-AGAAAATGAAAATGATCGAGATTAAACC
* * * *
3290817 ATAAGTC-AGAAAATGAAAAGGAT-GGGAATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * *
3290852 ACAAGTC-AGAAAATGAAAAAGATCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * *
3290887 ATGAGTCAA-AAAACAAAAACGACCAAGATTAAGCA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3290922 ACT-AGT-AAGAAAATAAAAATGACCCAGATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3290957 ACGAGTC-AGAAAATGAAAATGA-CCAGGATTGAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3290992 ATGGGTCAA-AAAATAAAAACGATC-AGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3291027 GTGGGT-TAGAAAATGAAAACGATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3291062 ATGAGTTAA-AAAATGAAAATGATCGACATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * * *
3291097 ACAAGT-AAGAGAAATAAAAATAATCAAAATTCAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * *
3291133 ACGAGTCAA-AAAAAGAAAACGATCGAGA-TAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * **
3291167 ACGAGTTAAGAAATGAAAATGATAATGAAAATTATCGAAATTAAATT
1 ATGAG-T---CAA-G---A--A-AATGAAAATGATCGAGATTAAACC
*
3291214 ACGAGTCAA-AAAATGAAAATGATC-AGGATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3291247 AGGCAAGTTAA-AAAATGAAAATGA-CTAGAATTAAAGC
1 ATG--AGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3291284 ATGAGT-TAGAAAACGAAAATGA-CTGGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * ** *
3291319 TTAAG-CGAGAAAATGAAAACCA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3291354 ATGAGTCAA-AAAATGAAAACGATCGGGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3291389 ATGAGTC-AG-AAATGAAAAACAACCAGGATTATACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3291424 ACGAGTC---AAAATGAAAACGATCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3291457 ACGAGTCAA-AAAATAAAAATGA-CTGGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** ** * *
3291492 ATGCCT-TTGAAAATGAAAATGATAGGGATTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3291526 ACGAGT-TAGAAAATGTAAAA-CAACAGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
** * * *
3291562 ACAAGTCAA-AAAGTGAAAATGACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3291597 ACGAGTC-AGAAAATGAAAATGACCAAAATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3291632 ATGAGTCAA-AAAATGAAAATGATCGACATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3291667 ATGAGTCAA-ACAA--AAAA-GATTGA-ATCCAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGAT-TAAACC
** * * * *
3291699 ACAAGTCAAAAAAATGAGAGTGA-CTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3291735 ACTG-GTCAA-AAAATGAAAATGATAG-GAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3291770 ACGAGTCAA-AAAATAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3291805 ATGAGTCTA-AAATTGAAAACGATCGAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * * * *
3291840 ACGAATCAA-AAAATTAAAA-CAACAGGGAATAAAGC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3291875 ATGAGT-TAGAAAATGAAAATGACCGAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * *
3291910 ACT-AGTTAA-AAAATGAAAAACAATCGGGATTAAGCC
1 A-TGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * *
3291946 ATGAGTC-AGAAAAATGAAGATAATGGGGATTAAACC
1 ATGAGTCAAG-AAAATGAAAATGATCGAGATTAAACC
** * * *
3291982 ACAAG-CCAGAGAAAT-AAAA-G-TACCAGAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGAT-CGAG-ATTAAACC
* * *
3292017 ATGAGT-AA-AAGAAAGAAAAAG-T-GGGATTAAACC
1 ATGAGTCAAGAA-AATGAAAATGATCGAGATTAAACC
** * * * * * * *
3292050 ACAAG-CTAGGAAATAAAAAATTACCAGAAATTAAATC
1 ATGAGTCAAGAAAAT-GAAAATGATC-GAGATTAAACC
* * *
3292087 ACGAGTCAA-AAAA--ACAAAGGATGGA-ATTAAACC
1 ATGAGTCAAGAAAATGA-AAATGATCGAGATTAAACC
* * * * * *
3292120 ACGA-TTAAAAAAATGACAACGA-CCAGGA-TAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3292153 ATGAGT-TAGAAAAATAAAAATGACCAAAATTAAACC
1 ATGAGTCAAG-AAAATGAAAATGATCGAGATTAAACC
* * ** *
3292189 ACGAGTTAA-AATTTG-AAACGACTCG-GATT-AA-C
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
*
3292221 ATGAGTC---AAAAT-AAAATGA-CTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3292253 GT-ATGTCAA-AAAA-GAAAA-GACTGGA-ATTAAACC
1 ATGA-GTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * **
3292286 -TGGGT-TAG-AAATGAAAATGATCGA-ATTAAATT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3292318 ATAAGTCAA-AAAATGAAAAT-ACTC-AGTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAG-ATTAAACC
** * * * * * * *
3292353 ACAAAT-AAGAGAAT--ACACGAGTCAAAGAATAAA-A
1 ATGAGTCAAGAAAATGAAAATGA-TC-GAGATTAAACC
* ** * * **
3292387 ATGA-TCAA-ATTAAAT-CACGTG-TCAGAAAATGAAAAGG
1 ATGAGTCAAGA--AAATGAAAATGATC-G-AGAT-TAAACC
* * * **
3292424 ATGGGAATTAACCATGAGTTAGAAATGAAAACGA-CTAAGATTAAATT
1 AT--G-AGT---CA--AG--A-AAATGAAAATGATC-GAGATTAAACC
* * *
3292471 ACGAGTCAA-AAAATAAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3292506 ACGAGTCAA-AAAAT-AAAATTTACCTAGATTAAATC
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* *
3292541 ACGAGTC-AGAAAATGAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3292576 ATGGGT-TAGAAAATGAAAACGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3292611 ATGGGTTAA-AAAATGAAAATGATTGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3292646 ATGAGTCAA-AAAATGAAAATGATCG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * * *
3292681 ACAAGTCAA-AGAAATAAAAAAG-TCAAAGAAATAAA-A
1 ATGAGTCAAGA-AAATGAAAATGATC-GAG-ATTAAACC
* * ** **
3292717 ATGA-TCAA-AATTAAGTCACAA-G-TC-AGAAAACGAAAA
1 ATGAGTCAAGAA--AA-TGAAAATGATCGAGATTA--AACC
* * ** *
3292753 ATGA-TC--G-AGAT-TAAACCAT-GAG-TTAGGAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTA--AACC
* * * * **
3292784 A--A--AAATGATAATG-AAATTA-CTGAAATTAAATT
1 ATGAGTCAA-GAAAATGAAAATGATC-GAGATTAAACC
* * **
3292816 ATGAGTC-AGAAAATGAAAATGATTGGGATTAAAAT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * * *
3292851 GTGAGTTAAAAAAACGAAAACGACTGGA-ATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
** * * * * *
3292887 ACAAGT-TAGAAAATG-AAACGATTGGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*** * ** *
3292921 CCAAGT-GAGAAAATGAAAACCA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * **
3292956 -TCGAGT-TAGAAAAT-AAAAGTGATCGGGATTAAATG
1 AT-GAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* * * * *
3292991 ATGAGTCAA-AAAATAAAAAACGACCGGGATTATACC
1 ATGAGTCAAGAAAAT-GAAAATGATCGAGATTAAACC
* * *
3293027 ACGAGTCAA-AAAATGAAAATGACCGAGATT-AATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3293061 ATTAGTCAA-AAAAT-AAACATGAT-AAGGATTAAACA
1 ATGAGTCAAGAAAATGAAA-ATGATCGA-GATTAAACC
* *
3293096 ATGCA-TCAA-AAAATGAAAATGAT-AAGGATTAAAGC
1 ATG-AGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * **
3293131 ACGAGTC-AGAAAATGAAAATGA-CCAGAATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * **
3293166 ATGAGTCAA-AAAATGTAAAA-GATTGACATTAAATA
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * *
3293201 ATGAGTCAA-AGAAAT-AAAATTGGTCGAAATCAAATC
1 ATGAGTCAAGA-AAATGAAAA-TGATCGAGATTAAACC
** *
3293237 ACAAGTCAA-AAAATGAAAATGA-CAAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * *
3293272 ACT-AGTCAAAAAAATGAAAATGACCAAAATTGAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * * *
3293308 ACGAGTCTA-AAACTAAAAACGATCGGGATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3293343 ACAAGTCAA-AAAATTAAAATGATAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3293378 ACGAGTC-AGAAACTGAAAATGATC-AAATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3293412 ATCG-GTCAA-AAAATGAAAAACGAT-TAGGGTTAAACT
1 AT-GAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* ** *
3293448 ATGAGTCAA-AAAATGAAGACAATGGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3293483 ATGAGTC-AGAGAAATAAAAATGA-CCAGAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* *
3293519 ATGAGTCAA-AAAATGAAAAAGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3293554 ACGAGTCTA-AAAATGAAAATGATCGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3293589 ACGAGTC-AGAAATTAAAAACGACCAAGATTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3293623 ATAAGT-AAAAAAATAAAAATGACCCGA-ATTAAATC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* *
3293658 ATGAGTCAA-AAAATGAAAACGATCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3293693 ATG-G----G----T--CAACGACCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3293718 TTGGGT-AAGAAAATGAAAATGATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * **
3293753 ATGAGTTAA-AAAATGAAAACAATCGATATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3293788 ATAAGTCAAGGAAATAAAAATGATCCAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3293824 ATGAGT-TAGAAAATGAAAGTGATCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * **
3293859 ACGAGTCAGGAAATGAAAATGATAATGAAAATTACTAGAATTAAATT
1 ATGAGTC----AA-GAAAATGAAAATG---A-T-CGAG-ATTAAACC
* * *
3293906 AAGAGTC-AGAAAATGAAAATGATTGAGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * ** * *
3293941 ACGAGTTAAAAAAATGAAAACAACTGGA-ATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* *
3293977 ATGAGTCAA-AAAATGAAAACGA-CTG-GACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * ** * *
3294011 TTGAGT-GAGAAAATGAAAACCA-CTAGGATTAGACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* ** * **
3294046 ATAAGTCAA-AAAATGAAAGCGATCGGGATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** *
3294081 ACGAGT-AAAAAAATGAAAACAATC-AGGATTATACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3294116 A-CAGTC-A-AAAATAAAAATGATCTAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3294149 ATGAGTCAA-AAAATAAAAATGA-CAGAGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * ** * *
3294184 ACGCG-CTAGACAATGAAAACAAT-AAGGATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * ** *
3294219 ACAAGTC-AGAAAATTTAAAA-CAAGGAGGAATAAACC
1 ATGAGTCAAGAAAA-TGAAAATGATCGA-GATTAAACC
* * * *
3294255 ATAAGTCAA-AAAGTGAAAATGATTGAGATTGAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
**
3294290 ATGAGTCAA-AAAATGAAAATGATC-AGAATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3294325 ACGAGTCAA-AAAATGAAAATG-GCTAGCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3294360 ATGAGTCATGAAAA-AAAAATGA-CCAGAATCAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * *
3294395 ACAAGTCAA-AAAAAGAAAATGA-CAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3294430 ACT-AGTCAA-AAAATGAAAATGA-CTAGAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * * * **
3294465 ACAAGTCAAG--AATAAAAATTACCAAAATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3294499 ATGAGTCTA-AAACTTAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3294534 ATGAGTC-AGAAAATTAAAATGATGGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** *
3294569 ACGAGT-TAGAAAATGAAAACAATCGAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3294604 ACT-AGTCAA-AAAATGAAAAATGATC-AGGATTAAATC
1 A-TGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
**
3294640 ATGAGTC-AGAAAATGAAGACAACAT-G-GATTAAACC
1 ATGAGTCAAGAAAATGAA-A-ATGATCGAGATTAAACC
* * * * *
3294675 ATGAGTC-AGAGAAATAAAAACGA-CCATAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGA-GATTAAACC
* *
3294711 ATGAGTC-AGAAAATGAAAAGGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* *
3294746 ATGAGTC-AGAAAATGAAAAAGATC-ATGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3294781 ACGAGTC-AGAAAATAAAAATGACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3294816 ACGAGTTAA-AAAGTAAAAATGACCTGA-ATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * * * * *
3294851 ACAAGT-TAGAAAATGAAAAT-AACTAGGACTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
*
3294886 AT-AGGTCAA-AAAATGAAAATGACCGAGATTAAACC
1 ATGA-GTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * ** * *
3294921 TTGGGTTAA-AAAATGAAAACAATCGAGAATAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * **
3294956 ATGAGT-TAGAAATTAAAAATGATTG-GTATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * * *
3294991 ACAAGT-TAGAGAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * **
3295027 ACT-AGTTAA-AAAAAGAAAACAATCGAGATTAAACC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** **
3295062 ATAAGTCAAGAAACAAAAAATGATAATGAAAATTATTAGAATTAAATT
1 ATGAGTCAAG------AAAATGAAAATG---A-T-CGAG-ATTAAACC
* *
3295110 ATGAGTCAA-AAAATGAAAATGA-CTAGGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3295145 ACGAGTTAA-AAAATGAAAATGATCAAAATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3295180 -TCGAGTC-AGAATATGAAAATGA-CTAGGACTAAACC
1 AT-GAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * ** * *
3295215 TTGAGT-GAGAAAATGAAAACCACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * ** * *
3295250 ACAAGT-TAGAAAATGAAAGCGATCGAAATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * *
3295285 ACAAGTCAA-AAAATGAATAACGATCGAGATTATACC
1 ATGAGTCAAGAAAATGAA-AATGATCGAGATTAAACC
** * * * * * *
3295321 ACAAGTTAA-TAAATGAAAATGGTTGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3295356 AGGAGTCAA-AAAAT-AAAATGA-CAGGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* ** * **
3295390 AT-ATGTCGA-AAAATGAAAACAAT-AAGGATTAAAGA
1 ATGA-GTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * ** * *
3295425 ACAAATGAA-AAAATGTAAAACAATAGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
** * * * * *
3295461 ACAACTCAA-AAAGTTAAAATGATTGAGATAAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3295496 AAGAGTCAA-AAAATGAAAATGA-CTAGAATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3295531 ACGAGTCAA-AAAACGAAGATGATTG-GCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3295566 ACCAAT-AA-AAAATG---ATCAT--A-ATCAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3295594 ACAAGTCAA-AAAATTAAAATGACCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3295629 ACT-AGTC-ACAAAATAAAAATGATCGAAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3295664 ATGAGTC-AGAAAATAAAAAT-AACTAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * * *
3295699 ACGAGTCTA-AAACTAAAAATGATCGGGATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3295734 ATG-GT-TAGAAAATTAAAATGA-CTAGGATTATACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *
3295768 ATGAGT-TAGAAAATGAAAATGAT-GAAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCG-AGATTAAACC
* **
3295803 ATTAGTC-AGAAAATGAAAAACAATCGAGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * *
3295839 ACT-AGTC-AGAAAAT-AAAGA-CAACAGGGATTAAACC
1 A-TGAGTCAAGAAAATGAAA-ATGATC-GAGATTAAACC
* * * * * *
3295874 ACGAGTGAAAAAAATAAAAATGA-CTAGAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * *
3295910 ACAAGTC-AGAAAATGAAAAGGAT-GGGAGTTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGA-TTAAACC
* * *
3295945 ATGAGTCAA-AAAATGAAAATGACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3295980 ATGAGT-TAGAAAAT-AAAAGTGACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* * * *
3296015 ATGAGTCAA-AAAATAAAAAAGACTTG-GATTAAATC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * *
3296050 ACGAGTCAA-AAAATGAAAATGATCGAGAATAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * *
3296085 ATGGGTCAA-AAAATG-AAACCAACTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3296120 ATGGGT-TAGAAAATGAAAACT-ACCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* ** * *
3296155 ATGTGTCAA-AAAATGAAAACAATCGATATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * *
3296190 ACAAGTCAA-AGAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* *
3296226 ATGAGT-AAAAAAATGAAACTGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * **
3296261 ACAAGTCAGGAAATGAAAA-CAATAATGGAAATTACCAAAATTAAATT
1 ATGAGTC----AA-GAAAATGAA-AAT-G--A-T--CGAGATTAAACC
* * * * **
3296308 ATGAGTCAA-AAAATGGAAATGATGGGGATGAAAAT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3296343 ACGAGTTAAAAAAATGAAAATGA-CTAGAATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * **
3296379 ATGAGT-TAGAAAATGAAAACGATTGCGACCAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * *
3296414 TTGAGT-GAGAAAATGAAAACCACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3296449 ATGAGT-TAGAAAGTGAAAGTGATCGAGAATAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * * *
3296484 ACGAGTC-AGAAAATGAAAAACAATTGAGAATATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* *
3296520 ATGAGTCAA-AAAATGAAAACGATC-AGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
*
3296555 ATGAGT--A-AAAA--AAAATGA-C-AGGAATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGA-G-ATTAAACC
* * * * *
3296586 ATGTGTCAA-AAAATGAAAA-CAACAAAGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3296621 ATGAGTC-AGAAAATGTAAAA-CAACAGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
* *
3296657 ATAAG-CTAA-AAAGTGAAAATGA-CTGAGATTAAACC
1 ATGAGTC-AAGAAAATGAAAATGATC-GAGATTAAACC
* * * * * **
3296692 ACGAGT-TAGAAAATGAAAAAGACCGAAATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3296727 ATGAGTCAA-AAAATGAAAATG-GCTG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAG-ATTAAACC
* * * * *
3296762 ACGAGTCAA-AGAAATAAAAATGA-CTGAAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATC-GAGATTAAACC
* * *
3296798 ATGAGTCGA-AAAATAAAAATGA-CTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3296833 ACT-AGCCAA-AAAA-CAAAATGATCAAAATT-AATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3296866 ATGAGTCAA-AAAATAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3296901 ATGAGTCTA-AAATTGAAAATGATTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * *
3296936 ACAAGTC---AAAATTAAAACAGCA-GGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAA-TG-ATCGAGATTAAACC
** ** * * *
3296970 ACAAGTC-A-ATCATGGACA--A-CGGGATTTAATA-C
1 ATGAGTCAAGAAAATGAAAATGATCGAGA-TTAA-ACC
* ** * ** **
3297002 A-GTTGTCACTAACTTATGATTTACCATAATTTTTC-ATTTTCGAAA--
1 ATG-AGTCAAGAA---A--A-TGA--A-AA-TGATCGAGATT--AAACC
* * * *** *** *
3297047 ATGGGTTTAATTCATCCTGTCATTTTTGA-CG-GATTATTAGATC
1 ATGAG-TCAA--GAAAATG--A-AAATGATCGAGATTA--A-ACC
**** ** * *
3297090 ATGAGTC-A-TTTCTCTAACTGAT--AGATTTAATCC
1 ATGAGTCAAGAAAATGAAAATGATCGAGA-TTAAACC
* ** * *** *
3297123 ATGAGT-TAGAATTTTATTTTTGACTC-AGATTAAATC
1 ATGAGTCAAGAAAATGA-AAATGA-TCGAGATTAAACC
* * **** * *
3297159 ACGTGTC-AGAATAAT-TTTTTGA-CCATGATTTAATCC
1 ATGAGTCAAGAA-AATGAAAATGATCGA-GA-TTAAACC
**** *** * *
3297195 -TG-GTC-ATTTCAT--TTCTGACTTG-GATTAATTCC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAA-ACC
* * ** ** *
3297227 ATG-GTTTTTTATTTTTGAAAATGAAAATCGAT-GATTTTATTTCT
1 ATGAG----TCA----AGAAAATGAAAAT-GATCGAGATTA-AACC
* ** ** * * * ***
3297271 TTGA--CTTG-ATTTG-ATACGATCGATATTTATTTC
1 ATGAGTCAAGAAAATGAAAATGATCGAGA-TTAAACC
* * * ** * * ** ** *
3297304 -TAAGTCATGATTAATCCATAT-TTTAATTTTCTAACTC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATT-AAAC-C
* * ** *
3297341 ATGTTAGTC-AG-AAAT---CATGATTC-AGTTTTCACA
1 ATG--AGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * ** * * * * * * *
3297374 AGTTAAGATGATTATAATTAATTAGGAGTCAAAAAATTAAA-A
1 A--TGAG-TCAAGAAAATGAA-AATGA-TC--GAGATTAAACC
* * * * *
3297416 ATGTGATTTAA-AAGCAAGTTAAAAATTTTGA-CTAGAATTAAAGC
1 A--TGAGTCAAGAA--AA--TGAAAA---TGATCGAG-ATTAAACC
* *
3297460 ATGAGTC-AGAAAATGAAAACGA-CTG-GACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * ** *
3297494 CTAAGT-GAGAAAATGAAAACCA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * *
3297529 ATGAGTC-AGAAAATGAAAGCGATC-AGGACTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* **
3297564 ACT-AGTC-AGAAAATGAAAAATGA-CTAGGATTGTACC
1 A-TGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * * *
3297600 ACGAGTCAA-AAAATGAAAACGACCGAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3297635 ACAAGTCAA-AAAATAAAAATGA-CAGGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3297670 ATGCA-T-TAGAAAATGAAAATGATAGGGATTAAAGC
1 ATG-AGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3297705 ATGAGTC-AGAAAATGTAAAA-CAACAGAGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
** * * * *
3297741 ACAAGTGAA-AAAGTGAAAATGACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3297776 ATGAGTCAA-AAAATGAAAACGACCAAAATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3297811 ATGAGTCAAAAAAATGAAAATGATC---ATTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3297843 A-AAG-CATTAGAAAATGAAAATGATAGGGATTAAAGC
1 ATGAGTCA--AGAAAATGAAAATGATCGAGATTAAACC
* * *
3297879 ATGAGTC-AGAAAATGTAAAA-CAACAGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
** * * * *
3297915 ACAAGTGAA-AAAGTGAAAATGACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3297950 ATGAGTCAA-AAAATGAAAATGACCAAAATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3297985 ATGAGTTAA-AAAATTGAAAATGATCAACATTAAATC
1 ATGAGTCAAGAAAA-TGAAAATGATCGAGATTAAACC
* * * * * *
3298021 ATGAGTTAA-AAAACTAAAAATAATTGAAATTAAATC
1 ATGAGTCAAGAAAA-TGAAAATGATCGAGATTAAACC
* * ** * *
3298057 ACGAG-CCAGAAAACAAAAATGA-CTGGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3298092 ACT-TGTCAA-AAAATGAAAACGATAG-GAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * * * *
3298127 ACGAGGC-TGAAAATAAAAATGATCGAAACTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3298162 ATAAGACTA-AAACTGAAAACGA-CTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * * *
3298197 ACGAATC-AGAAAATTAAAA-CAACAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
*
3298232 ATGAGTCAA-AAAATGAAAATGATCGAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * *
3298267 ACCAGTTAA-AAAATGAAAAAAGATC-AGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * * *
3298303 ACGAGTCAA-AAAATGAAGA-CATTGAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCG-AGATTAAACC
** * *
3298338 ACAAGTC-AGAGAAAT-AAAATGA-CCAGAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* * * *
3298373 ATAAGTCAA-AAAATGAAAAGGATGGAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3298408 ACGAGTC-AGAAAATGAAAATGATCGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3298443 ATAAGTCAA-AAAATAAAAATGA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * ** *
3298478 ACGAGT-TAGAAAATTTAAATGACTCG-GATTAAATC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* *
3298513 ATGAGTCAA-AAAATGAAAATGACCGAGATTTAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** *
3298548 ATGGGT-GGGAAAATGAAAATGATTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* **
3298583 ATGGGT-TGGAAAATGAAAACT-ATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* * * * * **
3298618 ATGAGTTAAGAAACAAAAACGATAATGAAAATTACCGAAATAAAATT
1 ATGAG-T------C---AA-GAAAATGAAAATGATCGAGATTAAACC
* * **
3298665 ATGAGTCAA-AAAATGAAAATTGCTTG-GATTAAAAT
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* * *
3298700 GTGAGTTC---AAAATGAAAATGATCGAAATTAAAGC
1 ATGAG-TCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3298734 ACGAGTCAA-AAAATAAAAATGACCGGGA-CAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * *
3298768 TTG-G-GAAGAAAATGAAAACCACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** *
3298802 ACGAGTC-AGAAAATTAAAGCGATCGAGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * *
3298837 ACGAGTCAA-AAATTGAAAAACAACTGGGA-TAATACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAA-ACC
* *
3298873 ATGAGTTAA-AAAATGAAAATGA-CTGAGATTAAATTAC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAA--CC
* *
3298910 AT--GT--A-AAAA--AAAATGA-CAAGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3298939 ATGCA-TCAA-AAAATGAAAA-CAACAAGGATTAAAGC
1 ATG-AGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3298974 ACGAGTCAA-AAAATGTAAAA-CAACAGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
** * * *
3299010 ACAACTCAA-AAAGTGAAAATGATCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * * **
3299045 A-CATGT-AAAAAAATGAAAA-CAACATAAATTAAAATG
1 ATGA-GTCAAGAAAATGAAAATGATC-GAGATT-AAACC
* * * * * *
3299081 ATGAATCAA-AAAATGAAAATGACCAACACTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * *
3299116 ACAAGTCAA-AGCAATAAAAATGA-CCAGAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* * *
3299152 ACGAGTCAA-AAAATGAGAATGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3299187 ACT-AGTCAA-AAAATAAAAATGACCGAAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3299222 ACGAGTCAA-AAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3299257 ACGAGTCTA-AAATTGAAAAAG-GCTAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3299292 ACGAGTC-AGAAAATTAAAA--AT-AAGGGTTCAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3299325 AAGAGTCAA-AAAATGAAAATGACCGAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3299360 ACT-AGTCAA-AAAAAGAAAAACGATC-AGGATTAAACC
1 A-TGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
** * * *
3299396 ACAAGTC-AGAAAATGAAGAT-AACAGAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * * *
3299431 ATGACT-TAGAGAAATAAAAATGA-CCATAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGA-GATTAAACC
*
3299467 ATGAGTCAA-AAAATGAAAATGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3299502 ACG-GTC-AGAAAATGGAAACGAACGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3299536 ATGAGT-TAGAAAA--AAAATGA-CCATGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * *
3299569 ATGAGT-TTGAAAATGAAAATGACCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3299604 ATGGGTTAA-AAAATGAAAATGA-CTGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3299639 ACGAGTCAA-AAAATAAAAATGATCG-GTATTAAATTTC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAA--CC
* * * * *
3299676 A--AGT-TAGAGAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* ** * *
3299710 ATGAGT-TAGAAAACAAAAACGATCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * **
3299745 ATGAGTCAGGAAATGAAAACAATAATGAAAATTATTGAAATTAAATT
1 ATGAGTC----AA-G-----AA-AATGAAAATGATCGAGATTAAACC
* * *
3299792 ACGAGTC-AGAAAATGAAAATGAATAGA-ATTAAAGC
1 ATGAGTCAAGAAAATGAAAATG-ATCGAGATTAAACC
* * * * * *
3299827 AAGAGT-TAGAAAATAAAAATGA-CTAGGACTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * * **
3299862 TTAAGT-GAGAAAATG-AAATCAATTGTGATTAAATG
1 ATGAGTCAAGAAAATGAAAAT-GATCGAGATTAAACC
* * * * *
3299897 ACGAGTCAA-AAAATGAAAAAT-AACCAGGAATATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * * * **
3299933 ACGAGTCAA-AAAAAGAAAATGA-CTAGGACTAAATT
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3299968 ATAAGTCAA-AAAATAAAAATGA-CAAGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3300003 ATGTGTCAA-AAAATGAAAATGA-CAAGGATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * *
3300038 ACAAGTC-AGAAAATGTAAAA-CA-CTAAGAATAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
** * * *
3300073 ACAAGTC-A-AAAAGGAAAATAATCG-GATTAGACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * * * * * *
3300106 ACGAGT-TAGAAAATGAAAACAACCAAAAGTCAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3300141 ACGAGTTCAA-ACAAATGAAAATTGA-CTG-GCATTACATC
1 ATGAG-TCAAGA-AAATGAAAA-TGATC-GAG-ATTAAACC
* * * * * * * *
3300179 ATGAGTC-A-AAAATAAAAAAGCTCCAAAATCATATC
1 ATGAGTCAAGAAAATGAAAATGAT-CGAGATTAAACC
* * * * * *
3300214 ACGAGTCAAAAAAATGGAAAATGACCCAAAATTAAATC
1 ATGAGTCAAGAAAAT-GAAAATGA-TCGAGATTAAACC
* * * *** *
3300252 ACGAGTCTA-AAACTGAAAGCAATC-AGAGT-AACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3300285 AGGAATCCA-AAAATTAAAATGA-CAGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3300320 ATGATGT-TAGAAAATGAAAACGA-CCAGGA--GAACC
1 ATGA-GTCAAGAAAATGAAAATGATCGA-GATTAAACC
** *
3300354 ACCAGTC-A-AAAATGAAAAACGATCG-GATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * * *
3300388 ACT-ATTC-AGAAAATGAAGA-CAACGGGGATT-AACC
1 A-TGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * * * *
3300422 ACAAGT-TAGAAAAT-AAAATGA-CTAGAATTTAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * *
3300456 ATGAATC-ATAAAATGAAAATGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * ** *
3300491 ACAAGT-TAGAAAATAAAAACAATCGATATTAAATCC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAA-CC
* * * * * *
3300527 -CGAGTCTA-AAAATAAAAATGACCTAGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3300561 ATGAGTC-AGAAAAT-ACAA--A-C--GACTCAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3300590 ATAAGT-GAGAAAATGAAAATG-CCTAGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* **
3300625 ATGGGTC-AGAAAATGAAAATGATCGAGATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * **
3300660 ACAAGTC-AGAAAATGAAAA-CAGTTG-GTATTAAATT
1 ATGAGTCAAGAAAATGAAAATGA-TCGAG-ATTAAACC
** * * * * **
3300695 ACAAGTTAGAGAAACA--AAAATGATCAAAATTGAATA
1 ATGAGTCA-AGAAA-ATGAAAATGATCGAGATTAAACC
* ** *
3300731 ACGAGTCAA-AAAACAAAAACGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * **
3300766 ATCAGTCAGGAAACGAAAATGATAATGAAAATTACCAAATTAAATT
1 ATGAGTC----AA-GAAAATGAAAATG---A-T-CGAGATTAAACC
* * * *
3300812 ACGAGT-TAGAAAA-AAAAATGATCGGGATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3300844 ATGCGAGTTAA-AAAATGAAAATGATAG-GAATTAAAAC
1 AT--GAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3300881 ATGAGTCAA-AAAATGAAAATGATTGGGACTACACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * ** * *
3300916 TTGAGT-GAGAAAATGAGAACCACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** **
3300951 ATGAGTCAA-AAAATGAAAGCGATCGAGATTAAATT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * *
3300986 ACAAGTC-AGAAAATGAAAAACGAGCGAAAGTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * * * *
3301022 ACGAGTTAAAAAAATGAAAATGACCGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * **
3301058 ATGAGTCAA-AAAATAAAAATGATAGGGATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * *
3301093 ATGCA-T-TGGAAAATAAAAATGATAGGGATTAAAGC
1 ATG-AGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3301128 ACGAGTC-AGAAAATGTAAAAT-AACAGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
* * * * **
3301164 A-CAGTCAA-AAAGTGAAATTGACCGAGATTAAAGA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * **
3301198 ACAAGTCAA-AAAATTAAAATGA-CTGACATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3301233 ATGAGTCAA-AAAATAAAAAT-AACCAGTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3301268 ATGAGTCAA-AGAAATAAAAATGACCGAAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* ** * * *
3301304 ACGTTTC-AGAAAGTGAAAATTATC-AGGATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3301339 ACTCA-TCAA-AAAATGAAAACGA-CAAGAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * ***
3301374 ACAAGTCAA-AAAATAAAAATGA-CTGAAATTATGTC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3301409 AGGCA-TCTA-AAACTAAAAATGA-CTGAGATTAAACC
1 ATG-AGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3301444 ATGAAT-AAGAAAATTAAAACGAT-AAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3301479 ACGAGCCAA-CAAGTGAAAATGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3301514 ACCAGT-TAGGAAATGAAAAATGATCGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* **
3301550 ATGAGTCAA-AAAATTAAGACAACAT-G-GATTAAACC
1 ATGAGTCAAGAAAATGAA-A-ATGATCGAGATTAAACC
*
3301585 ATGAGTCATAG-AAATAAAAATGATC-AGAATTAAATCAC
1 ATGAGTCA-AGAAAATGAAAATGATCGAG-ATTAAA-C-C
* * *
3301623 AT--GTCAA-AAAATG-AAATGGAT-GGGAATTCAACT
1 ATGAGTCAAGAAAATGAAAAT-GATCGAG-ATTAAACC
** * * *
3301656 ACAAGTC-AGAAAATGAAAATGATTGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3301691 ACGAGTCAA-AAAATAAAAACGA-CTAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3301726 ATGAGTCAA-AAAAT-AACAAAGACCCAGATTAAATC
1 ATGAGTCAAGAAAATGAA-AATGATCGAGATTAAACC
* * *
3301761 ATGAGTCAA-AAAATGAAAA-CAACCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3301796 ATGGGTCAA-AAAAGGAAAA-CAACTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3301831 ATGGGT--AGAAGATAAAAATGATCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** ** *
3301865 ACAAGTC-A-AAAATGAAAACCATCG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * *
3301899 ACAAGTC-AGAGAAATAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * * **
3301935 ATGAGTCAGGAAAA-AAAAATGATTGAGATTAATTC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * **
3301970 ACGAGTCAAGAAATGAAAACGATAATGAAAATTATCGAAATTAAATT
1 ATGAGTC----AA-G---A--A-AATGAAAATGATCGAGATTAAACC
* *
3302017 AT-AGGTCAA-AAAATGAAAATAATC-AGGATTAAAAC
1 ATGA-GTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * * *
3302052 GCGAGTTAA-AAAATGAAATTGA-CTAGAATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3302087 ACGAGTC-AGGAAATGAAAATGA-CTAGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * ** * *
3302122 CTAAAT-GAGAAAATGAAAACCA-CCAGGATTAATCC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * ** * **
3302157 ATGA-ACCAGTAAATGAAAGCGATCGGGATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3302192 ATGAGTCAA-AAATTAAAAATGATAGGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3302227 ACGCA-TCGA-AAAATGGAAATGA-CAGGGATTAAATC
1 ATG-AGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3302262 ACGAGTTAA-AAAGTGAAAATGATTGAGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3302297 ATGAGTCAA-AAAATGAAAACGA-CCAGCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * *
3302332 ACAAGTCAA-AGAAAT-AAAATTGATC-AGAATCAAATC
1 ATGAGTCAAGA-AAATGAAAA-TGATCGAG-ATTAAACC
* * * *
3302368 ATGAGT-TAGAAAATAAAAATGAT-TATGATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3302403 ACT-ATTCAA-AAAATGAAAACGATCG-GAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3302438 ACAAGTCAA-AGAAATAAAAATGAT-TAGAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* *
3302474 ATGAGT-TAGAAAATAAAAATGATC-AGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3302509 ACT-ATTCAA-AAAATGAAAACGATCAAAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * *
3302544 ACAAGT-TAGAAAATAAAAATGA-CTAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * * * *
3302579 ACAAGTC-TGAAATTGAAAATGACCGCGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * ** *
3302614 AAGAGT-TAGAAAATTAAAACGGAAAG-GATTAAATC
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* * *
3302649 ATGAGT-TAGAAAATGAAAATGATCAAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3302684 ACT-AGTCAA-AAAATGAAAAATAATCGAGATTAAACC
1 A-TGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* ** * *
3302720 ACGAGTCAA-AAAAT-AAAGACAATGGTGATTAAACC
1 ATGAGTCAAGAAAATGAAA-ATGATCGAGATTAAACC
* * * *
3302755 ATAAGTC-AGAGAAAT-AAACTAACTTGA-ATTAAATCAC
1 ATGAGTCAAGA-AAATGAAAATGA-TCGAGATTAAA-C-C
* ** *
3302792 AAGA-T--AGAAAATGAAAACAAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* *
3302825 AAGAGTCAA-AAAATGAAAATGATC-AGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3302860 ATGAGT-TAGAAAATAAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3302895 ATGAGTC-AGAAAATAAAAATGACCCAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3302930 ATGAGTC-AGAAAATGAAACTGA-CTAGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *
3302965 ATGGGTCAA-AAAATGAAAATGA-CCATGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3303000 ATGGGT-TAGAAAATGAAAACGA-CTAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3303035 ACGAGTCAA-AAAATGAAAATGAT-TAGTTTTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3303070 ATAAGTC-AGAGAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * *
3303106 ACGAGTCAA-AAAACGAAAACGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* **
3303141 ATGAGTC-AGAAAATGAAAACAATAATGAAAATTACTAGAATTAAATT
1 ATGAGTCAAGAAAATG-----AA-AATG---A-T-CGAG-ATTAAACC
* * *
3303188 ATGAGTCAA-AAAATGAAAATTATCTAGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * * *
3303223 GTGAGTTAA-AAAATGAAAACAACCGAAATTAAA-G
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3303257 ATGAGTC-AGAGAATGAAAA-CAACTGGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *** *
3303292 CTAAGT-GAGAAAATGAAAGCAATCGAGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3303327 ATGAGT-TAGAAAATGAAAAATGACCAAGATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * *
3303363 ACGAGTCAA-AAAATGAAAATGA-CTAGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * **
3303398 ATGAGTCAA-AAAATAAAAATGA-CAAGGATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3303433 AT-A--CATTGGAAAATGAAAACGA-CAGGGATTAAAGC
1 ATGAGTCA--AGAAAATGAAAATGATC-GAGATTAAACC
* *
3303468 ATGAGTCAA-AAAATGTAAAA-CAAC-AGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * * *
3303503 ATAAGTTAA-AAAGTGAAAATGATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * **
3303538 ACAAGTCAA-AAAATTAAAATGATC-AGAATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * *
3303573 AAAAGTCCA-AAAATGAAAATGA-CCAGCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3303608 ATGAGTCAA-AGAAATAAAAATGATCGAAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * * * *
3303644 ACGAATC-AGAAAATGAAAACGACCGAGAATAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3303679 ATTAGT-AA-AAAA--AAAATGACCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3303711 ATTACTCAA-AAAATAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3303746 ATGAGTTTA-AAACTGAAAATGATTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3303781 ATGAGT-TAGAAAATTAAAACGA-CAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3303816 ATGAGTC-AGAAAATGAATATGA-CTAAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3303851 ACCG-GTCAA-AAAATGAAAAATGAT-TAGGATTAAACT
1 A-TGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * ** * *
3303887 ACGAGTC-AGAAAATGAAGACAATGGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3303922 ATGAGT-TAGAGAAATAAAAATGACCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * *
3303958 ATTAGTC-AGAAAATGAAAAGGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3303993 ATGAGTTAA-AAAATGAAAACGATGGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3304028 ATGAGTCAA-AAAATAAAAATGA-CCAGGATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * ** * *
3304063 ACAAGTCAA-AAAATTAAGACAATGGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3304098 AGGAGTC-AGAGAAATAAAAATGACCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * * *
3304134 ACGAGTC-AGAAAATGAAAA-CA-CAGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3304168 ATGAGTCAA-AAAATAAAAATGA-CTGAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * ** * *
3304203 ACAAGTC-AGAAAATGAAGACAATGGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * * * *
3304238 ATGGGTC-AGAGAAAT-AAAAACAACTAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATC-GAGATTAAACC
* * *
3304274 ACGAGTCAA-AAAATAAAAATGATAG-GAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3304309 ACGAG--ATAGAAAATGAAAACGA-CTAGGATTAAATC
1 ATGAGTCA-AGAAAATGAAAATGATCGA-GATTAAACC
* *
3304344 ATGAGTCAA-AAAATAAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * * *
3304379 TTCAGTC-AGAAAATAAAAATGACCTAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
**
3304414 ACAAGTC-AGAAAATGAAAATGATC-AGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *
3304449 ATG-GATCAA-AAAATAAAAATGA-CTGGGATTAAACC
1 ATGAG-TCAAGAAAATGAAAATGATC-GAGATTAAACC
* * ** * * *
3304484 ATGGGT-TAGAAAATGAAAACAACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * * *
3304519 ATAAATC-AGAAAATGAAAACAACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3304554 ATGAGTC-AGAAAATGAAAACGATTG-GTGTTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * *
3304589 AAAAGTC-AGAGAAATAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* ** * *
3304625 ACGAGTC-AGAAAACAAAAATGATCG-GGTGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3304659 ACGAGT-TAGGAAATGAAAATGA---A-AGT-----
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3304685 ATGAGTC-GGAAATTGAAAACGA-CTAGGACTAACCC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * ** * *
3304720 CTGAATGAA-AAAATGAAAACCA-CCATGATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * *
3304755 ATGAGTCAA-AAAATGAAAGCGAT-TAGGACTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * *
3304790 ACAAGTC-AGAAAATGAAAAATGATTGAGATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * * **
3304826 ACGAATCAA-AAATTGAAAATGA-CTGGGATTAAATT
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * * * *
3304861 ATTAGTCAA-AAAATAAAAAAGATAGTGATTAAGCA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * * *
3304896 ACGTA-TCAA-AAAATGAAAACAATAGGGATTAAAGC
1 ATG-AGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3304931 ACAAGTC-AGAAAATGTAAAA-CAACGGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
* * * *
3304967 ATAAGTCAA-AAAGTGAAAATGA-CTGACAGTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * ** * * * **
3305002 ACGAGTTAA-AAAATGAAAACAATCAAAATTAGATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3305037 ACGAGTCAA-AAAATAAAAATGA-CCAGCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3305072 ATGAGTC-AGAGAAATAAAAAAGACTGGAG-TCAAATC
1 ATGAGTCAAGA-AAATGAAAATGA-TCGAGATTAAACC
* * * * * *
3305108 ACGAGTC-AGAAAATAAAAATGACCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3305143 ACGAGTCTA-AAACTAAAAATGA-C-AGGTATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGA-G-ATTAAACC
* * * * *
3305178 ATGAGTC-AGAAATTTAAAATG-GCAGGGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3305213 ATG-GT-TAGAAAATGAAAATGACCAAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * ** * *
3305247 ACCAATCAA-AAAATGAAAAACAATAGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * * * *
3305283 ACGAGAC-AGAAAAAGAAGA-CAACGAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * * *
3305318 ACGAGTC-AGAGAAATAAAAATGACCAAAAGTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
** * *
3305354 ACAACTC-AGAAAATGAAAATGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * *
3305389 ATGAGTCAA-AAAATAAAAATGA-CCAGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3305424 ATGAGT-TAGAAAATAAAAACGA-CCAGGATTAAGCC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3305459 ACGAGTC-AGAAAATAAAAATGACCCAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3305494 ATGAGTCAA-AAAATGAAAATGATTGAGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3305529 ATGGGT-TAGAAAATAAAAATGACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3305564 ATGGGT-TAGAAAAGGAAAATGATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3305599 ATGAGCCAA-AAAATAAAAATGATC-AGTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * * *
3305634 ACAAGT-TAGAGAAATAAAAATGATTGAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* *
3305670 ATGAGTC-AGAAAATGAAAATGATCAAGATCAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3305705 ATGAGT-TAGGAAACGAAAACGGTAAT-GAAAATT--ACC
1 ATGAGTCAAGAAAATGAAAA---TGATCG-AGATTAAACC
* * * * * **
3305741 A-GAATTAA-ATTACAAGTTAAAAACTAAAC-ACGAGTTAAAAA
1 ATGAGTCAAGA--A-AA--TGAAAA-TGATCGA-GA-TTAAACC
* * *
3305782 ATGA--AAATGATCGAAAT-TAAA-GCA-CAAG-TTAGAA--
1 ATGAGTCAA-GA---AAATGAAAATG-ATCGAGATTA-AACC
* * * *
3305816 A--A-T---GAAAATG--ACTG--GGA-CTTAATCC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** ** **
3305841 TAAGTGAGAAAATG-AAA--ACCACCA--G-GATTAAACC
1 --A-TGAGTCAA-GAAAATGAAAATGATCGAGATTAAACC
* * *** * *
3305875 ACGAGTCAA-AATATGAAAGCAATCGAGAATAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3305910 ATGAGTC-AGAAAATGAAAAATGATCGAAATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * *** ** * * *
3305946 ACGAATCAA-ATTTTGAAAAAAACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3305981 ATGAGTCAA-AAAATAAAAATGA-C-AGGCATTAAATAAC
1 ATGAGTCAAGAAAATGAAAATGATCGA-G-ATT-AA-ACC
* * * *
3306018 A-CA-TCGA-AAAATGAAAATGA-CATAGATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3306051 ACGAGTCAA-AAAATGTAAAATAATAGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* *
3306087 ATAAGTCAA-AAAGTGAAAATGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3306122 ATGAATCAA-AAAATGAAAATGA-CTAAAATTAATCT
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3306157 ACGAGTCAA-AAAATGAAAAGGATCGACATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3306192 ATGAGTCAA-AGAAATAAAAATGATCAAAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * * * *
3306228 ACT-AGTCAA-AAAATGAAAATGACCAAAATTTAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * * *
3306263 ACGAGTCAA-AAAATAAAAATGGCCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3306298 ATGATTCTA-AAACTGAAAATGA-CTGAGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* ** * *
3306333 ATGGGTC-AGAAAATTTAAATGATAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3306368 ACGAGTC-AGTAAATGAAAAT-AACCATGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * * **
3306403 ACCAG-CTAGAAAATGAAAAATGATCCACGAGTCAAAAA
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GA-TTAAACC
* *** * ** * *
3306441 ATGAAGACAATGGGGATTAAACCACAAGTCAGAGAAATAAA-A
1 ATG-AGTCAA-GAAAATGAAA--ATGA-TC-GAG-ATTAAACC
* * * * * **
3306483 ATGA-CCATA-ATTAAATCACAA-G-TCAGAAAATGAAAAGG
1 ATGAGTCA-AGA--AAATGAAAATGATC-G-AGAT-TAAACC
* ** * *
3306521 ATGGGAATTAAACCATGAGTCCAAAAATGAAAACAAT-TAGGATTAAATC
1 AT--G-AGT----CA--AG----AAAATGAAAATGATCGA-GATTAAACC
* ** * *
3306570 ACGAGTCAA-AAAAT-AAAAACAGCTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * * * *
3306605 ACGAGT-TAGTAAATAAAAATGACCCAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3306640 ATGAGTCAA-AAAATGAAAATGA-CAGGGATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3306675 ATGGGT-TAGAAAAT-ACAAATGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGA-AAATGATCGAGATTAAACC
* * * * *
3306710 ATGCGT-TAGAAAATGAAAACGACCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * *
3306745 ACAAGTCAA-AAAATAAAAATGATCG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3306780 ATAAGTC-AGAGAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
** * *
3306816 ACAAGTCAA-AAAATGAAAACGAT-GAAGATTGAACC
1 ATGAGTCAAGAAAATGAAAATGATCG-AGATTAAACC
* * ** * **
3306851 AAGAGCTAGGAAATGAAAACAAAAATGAAAATTGCGAGAATTTAATT
1 ATGAG-T---CAA-GAAAATGAAAATG---A-T-CGAG-ATTAAACC
* *
3306898 ACGAGTC-AGAAAATGAAAATGATCGGGATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3306931 ATGCGAGTTAA-AAAATGAAAACGACCGAAATTAAAGC
1 AT--GAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * **
3306968 ACGAGTTAA-AAAATGAAAACGA-CTGGGACAAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * ** * *
3307003 CTGAGT-GAGAAAATGAAAACCA-CCATGATTATACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *** **
3307038 ATGAGTCAAAAAAATGAAAGCAATCGAGATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3307074 ACGAGTC-AGAAAATGAAAAATGATCGAGATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
** * * * *
3307110 ACAAGTTAA-AAAATGAAAATGATCGGGATTAGATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * **
3307145 ACGAATCAA-AAAATAAAAATGA-CAGTGATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3307180 ATGCA-TCGA-AAAATGAAAATGATAGGGATTAAAGC
1 ATG-AGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3307215 ATGAGTCAA-AAAATGTAAAATAATGGCGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
*
3307251 ATGAGTCAA-AAAGTGAAAATGA-CTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * * * **
3307286 ACAAGT-TAGAAAATGAAAATGATTG-GAATAAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3307321 ATGAGT-GAGAAAATGAAAATCATTG-GCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * *
3307356 ACAAGTCAA-AGAAATAAAAATGATCG-GAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
** * * *
3307392 ACAAGTC-AGAAAATGAAAATGATTGGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3307427 ATTAGT-AAAAAAATGAAAACGACCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3307462 ATGAGT-TAGAAAATAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * *
3307497 ACAAGTCTA-AAATTGAAAACGACCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3307532 ATGAGTCAA-AAAATTAAAATGATAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3307567 AGGAGTC-AGAAAATGAAAATGACCTAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * *
3307602 ACAAGTC-AGAAAATGAAAAAGGATC-AGGATTAAATC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * * *
3307638 ATGAGT-TAGAAAATGAAAA-CAACAAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3307673 ACGAGTC-AGAGAAATAAAAATGA-CTAGAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* * * * *
3307709 ATCAGT-TAGAAAATGAAAACGATAG-GAATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* *
3307744 ATGAGTC-A-AAAATGAAAATGA-CTGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * *
3307778 ACAAGTC-AGAAAATAAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3307813 ATGAGTTC-A-AAAATAAAAATGACCCAGATTAAATC
1 ATGAG-TCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3307848 ATGAGT-TAGAAAATTAAAACGA-CTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3307883 ATGGGTCAA-AAAATAAAAATGA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * *
3307918 ATGGGT-TAGAACAA-GAAAATGATTGCGACTAAATC
1 ATGAGTCAAGAA-AATGAAAATGATCGAGATTAAACC
** * * * **
3307953 ACAAGT-TAGAAAATGAAAATGATTG-GTACTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3307988 ACAAGTC-AGAGAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
3308024 ATGAGTCAA-AAAATGAAAATGAGT-GAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * *
3308059 AAGAGTCAAGAAACA--AAAATGAT--A-ATGAATATC
1 ATGAGTCAAGAAA-ATGAAAATGATCGAGATTAA-ACC
* *
3308092 ACGAGTCAA-AAAATGAAAATGATC-AGGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3308127 GTGAGT-AA-AAAATTGAAAATGACCGAAATTAAAAC
1 ATGAGTCAAGAAAA-TGAAAATGATCGAGATTAAACC
* * *
3308162 ACGAGTCAA-AAAATGAAAATGATAG-GACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** ** *
3308196 CT-AATTGAGAAAATGAAAACCA-CTAGA-TAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * **
3308228 A-GACTCAA-AAAATGAAAGTGCATCGGGA-TAAATG
1 ATGAGTCAAGAAAATGAAAATG-ATCGAGATTAAACC
* *
3308262 ATGAGATC-A-AAAAT-AAAAT-ACCGAGCTTATAACC
1 ATGAG-TCAAGAAAATGAAAATGATCGAGATTA-AACC
* * **
3308296 ATAAGTCAA-AAAATGAAAATGA-CCAGGATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3308331 ATGA---AATCAAATTAAAAATGATAGGGATTAAACAAC
1 ATGAGTCAA-GAAAATGAAAATGATCGAGATTAAAC--C
* * * * *
3308367 A-CA-TC-TG-AAATGAAAACG--CAGGGATTAAGCAC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAAC-C
* * * *
3308399 A-GA--CAA-AGAGT-AAAATCAAC-ATGACTTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GA-TTAAACC
* * * *
3308431 A-CACGTCAA-AAAACTGAAAATGACCCAGATTAAATC
1 ATGA-GTCAAGAAAA-TGAAAATGATCGAGATTAAACC
* * * * * **
3308467 ATGAGTCAA-AAAATGAAAACGACCAAAATCAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3308502 ATGAGTCAA-AAAATAAAAATGAT-GGGCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * * * *
3308537 ACGAGTCAA-AGAAATAAAAACGACCGAAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
*
3308573 ATGAGTCAA-AAAATG-AAATGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * *
3308607 ACT-AGTCAA-AAAACAAAAATGACTGGA-ATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
** * * * **
3308642 AAAAGTCAA-AAGATAAAAATGATCGAAATTAATTC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * *
3308677 ATGAGTCTA-AATTTGAAAACGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * *
3308712 ACAAGTCAA-AAAATTAAAATGACCAAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3308747 ACT-AGTCAA-AAAATGACAAAATGATCGTGATTAAGCC
1 A-TGAGTCAAGAAAATG--AAAATGATCGAGATTAAACC
* * * * *
3308784 ATGAATCAA-AAAATGAAGA-CAACGGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * *
3308819 ACCAGTCAGAGAAACA--AAAATGA-CCAGAATTAAATC
1 ATGAGTCA-AGAAA-ATGAAAATGATCGAG-ATTAAACC
* * ** **
3308855 ATGAGT-AAAAAAATAAAAAACATC-AGGATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* ** * * *
3308890 ATGAGTCAA-AAAATAAAAACAACCTG-CATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3308925 ATGAGTC-AGAAAAATGAAAATGACCAAGATTAAACC
1 ATGAGTCAAG-AAAATGAAAATGATCGAGATTAAACC
* * * * *
3308961 AAGGGTC-AGAGAATGACAACGA-C-AGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3308995 AT-AGGT-TAGAAAATGAAAACGAAT-GAGATTAAATC
1 ATGA-GTCAAGAAAATGAAAATG-ATCGAGATTAAACC
* * *
3309030 ATGAGTC-AGAAAATGAAAATGATTGATATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3309065 ACT-AGTC-AG-AAGTGAAAAGGA-CTGAGATTAAACC
1 A-TGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
*** * * **
3309099 CCAAGTCAA-AAAATGAAAATGA-CTAAAATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * * * *
3309134 ACAAGTCAA-AGAAATAAAAATGA-CTAGAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* * * * **
3309170 ACGAGT-AAAAAAATAAAAATGA-CTAGGATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * * *
3309205 ACT-AGTCAA-AAAACAAAAATGA-CTAAAAATAAATC
1 A-TGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * * * *
3309240 ACAAGTC-AGAAAATAAAAATGATCGAAATAAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3309275 ATGAGTCTA-AAACTGAAAACGAT-AAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * *
3309310 ACCAGTCAA-AAAATTAGAAA-GA-CAGGGATTAAACC
1 ATGAGTCAAGAAAATGA-AAATGATC-GAGATTAAACC
* ** * * *
3309345 ATAAGT-AAGAAAATGAAAACAACCGTGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** *
3309380 AAT-AGTC-AGAAAATGAAAAACAATCGTGATTAAACC
1 -ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * * *
3309416 ATGAATCAA-AAAATGAAGA-CAACAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3309451 ATAAGTC-AGAGAAATAAAAATTAT-TAGAATT-AACTC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAAC-C
* * * *
3309487 ATGAGTC-AGAAAATAAAAACGA-GGGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* ** * *
3309522 ATGACTCAA-AAAATGAAAATGATTAAGTTTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * *
3309557 ACAAGT-TAGAAAATAAAAAAGATCAAGATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3309592 ATGAGTCAA-AAAAGTAAAAATGACTCG-GATTAAATC
1 ATGAGTCAAGAAAA-TGAAAATGA-TCGAGATTAAACC
* * * *
3309628 ACGAGTC-AGAAAATGCAAACGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *
3309663 ---A-TC-AGAAAATGAAAACGA-CTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3309694 ATGGGT-TAGAAAATGAAAA-CAACTGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * *
3309729 ACAAGTC-AGAAAATGAAAATGATTG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3309764 ACAAGTC-A-AAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3309798 ACGAGTC-AGAAAACT-AAAACGATCAAGATTAAACC
1 ATGAGTCAAGAAAA-TGAAAATGATCGAGATTAAACC
* * * **
3309833 ATGAGTCAGGAAACAAAAATGATAATGAAAATTAGGAGAATTAAATT
1 ATGAGTC----AA-GAAAATGAAAATG---A-T-CGAG-ATTAAACC
* **
3309880 ATGAGT-AAGAAAATGAAAATGATCGGGATTAAAAT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * **
3309915 GTGAGTTAA-AAAATGAAAA-CAGTCGAAATTAAAAT
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * *
3309950 AGGAGTCAA-AAAATAAAAATGA-CTGAGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * ** * *
3309985 CTGAGT-GAGAAAATGAAAACCA-CCAGGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * ** ** *
3310020 ACAAGTC-AGAAAATGATAGCGATTAAGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3310055 ATAAGTC-AGAAAATGAAAAACGATTGGGATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * *
3310091 ATAAGTCAA-AAAATGAAAACGATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3310126 ATGAGTCAA-AAAATAAAAATG-GCAGGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3310161 AT-ACGTC-AG-AAATGAAAATGA-CAGGGATTAAAGC
1 ATGA-GTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3310195 ACGAGTCAA-AAAATGTAAAAT-AACAGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
* * * * *
3310231 ATAAATCAA-AAAGTGAAAAT-AGCCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * * **
3310266 ATGAGTC-AGAAAATGAAAACGATCAAAATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3310301 ATGAGTCAA-AAAGTGAAAATGA-CCAGCATTAAGTC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *** * * *
3310336 ACAAGTTAAAAAAAT-AAAACGAAAAAAATCAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * *
3310371 ACAAATC-AGAAAATGAAAATGA-CTAGGATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *
3310404 A--A-T--A-AAAATGACCAAA--ATC-AAATCAAA--
1 ATGAGTCAAGAAAATGA--AAATGATCGAGATTAAACC
* *** **
3310431 AGTCAAAAAATGAAAATG---AGCA--G-GATTAAACC
1 A-TGAGTCAA-GAAAATGAAAATGATCGAGATTAAACC
** * * * * **
3310463 ACAAGTTAA-AAAATGAAAATGACCAAAATTAATTC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * ** * *
3310498 GTGAATCTA-AAACTAAAAACAACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3310533 ATGAGTC-AGAAGATTAAAATGATAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3310568 ATGAGTC-AG--AATGAAAATGA-CTAAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
**
3310601 ACCAGTCAA-AAAATGAAAATGATC-ATGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3310636 ATGAGTC-AGAAAATGAAGA-CAACAAGGATTAATCC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * *
3310671 ACGAGTC-AGAGAAATAAAAATGACCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* *
3310707 ATGAGTCAA-AAAATAAAAATGATTG-GAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * *
3310742 ACAAGTCAA-AAAATGAAAATGATTGGGATTAAATCAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAA-C-C
** *** * * * * * *
3310779 AAAAAGT-ACCCAGATTAAACCATGACTCAAAAAATAAA-A
1 -ATGAGTCAAGAAAATGAAA--ATGA-TC-GAGATTAAACC
** * * * * **
3310818 ATGA--CCTG--GATTAAATTG-T-GAG-TCAAAAA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * * * ** *
3310847 ATGA--AAATGATCGGGATTAAACCATGGGTCAGAAAAGGAAAAC
1 ATGAGTCAA-GA---AAATGAAA--AT-GATC-G-AGATTAAACC
* * * * * * * *
3310890 A--A-TCAGGATTAAAT-CATAGGTTAGAAAATGAAA--
1 ATGAGTCAAGA--AAATGAAAATGATCG-AGATTAAACC
* * * *
3310923 ATGA-TCAAGATTAAATCATAA-G-TCAAAATATGAAA--
1 ATGAGTCAAGA--AAATGAAAATGATCGAGAT-T-AAACC
* * * * *
3310958 ATGA-TC-GGTACTAAATCACAA-G-TCAGAGAAATAAA-A
1 ATGAGTCAAG-A--AAATGAAAATGATC-GAG-ATTAAACC
* * * **
3310994 ATGA-TC--G-AAAT-TAAATCAT-AAG-TTAAAAA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * * * *
3311023 ATGA---AA-ACAATCGAGATTAAACCATGAGTCAAGA-A
1 ATGAGTCAAGAAAAT-GAAAATGATCGA-GA-TTAA-ACC
* * * * **
3311058 ATGA--AAATGATAATGAAAATTACTGGA-ATTAAATT
1 ATGAGTCAA-GAAAATGAAAATGA-TCGAGATTAAACC
* * *
3311093 ATGAGTC-A-AAAATGAGAATGATCAAGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3311127 ACGAGTTAA-AAAATGAAAACT-A-CCAGAATTGAAGC
1 ATGAGTCAAGAAAATGAAAA-TGATCGAG-ATTAAACC
* * * *
3311162 ACGAGTCAA-AAAATGAAAAGGA-CTGGGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * ** * *
3311197 CTGAGT-GAGAAAATGAAAACCACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3311232 ATGAGTC-AGAAAAT-AAAAGTGAT-AAGATTAAACG
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* * *
3311266 ATGAGTCAA-AAAATGAAAAACGAT-TAGGATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
** * *
3311302 ACAAGTCAA-AAAATGAAAATGA-CTAGGATTATACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3311337 TTGAGT-AA-AAAACTGAAAACGA-CTGCGATTAAATC
1 ATGAGTCAAGAAAA-TGAAAATGATC-GAGATTAAACC
* * * *
3311372 ATGAGTCAA-AAAATAAAAATGAT-AAGGATTGAACA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3311407 ACGCA-TCAA-AAAATGAAAACT-A-CAAGGATTAAAGC
1 ATG-AGTCAAGAAAATGAAAA-TGATCGA-GATTAAACC
* * * * *
3311442 ACGAGTCATA-AAATAT-AAAA-CAACAGGGATTAAATC
1 ATGAGTCA-AGAAA-ATGAAAATGATC-GAGATTAAACC
** * * * *
3311478 ACAAGACAA-AAAGTGAAAATGACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** ** * * *
3311513 ACAAGTC-AGAAAATGGGAACGA-CCAGAATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * *
3311548 ACAAGTCAA-AAAATGAAAATGA-CTAGCTTTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3311583 ACAAGTCAAAGAAACA--AAAATAATCGAAATCAAATC
1 ATGAGTC-AAGAAA-ATGAAAATGATCGAGATTAAACC
* * * * *
3311619 ACGAGT-TAGAAAATGAAAATGATTGAAATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3311654 ACT-AGTCAAAAAAATGAAAATGATCAAAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3311690 ACGAGTGAA-AAAATAAAAATGA-CTAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3311725 ACGAGTCTA-AAATTGAAAATGA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* ** * *
3311760 ATGAGTCAA-AAAATTAAAACAATTG-GATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3311794 ACGAGTCAA-AAAATGAAAATGACCGAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3311829 ACCAGTC-ATAAAATGAAAAATGAT-TATGACTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * ** * *
3311865 ATGGGTCAA-AAAATGAAGACAATGGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3311900 ACT-AGT-TAGAGAAATAAAAATGA-CCAGAATTAAATC
1 A-TGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* * *
3311936 ACGAGTC-AGAAAATGAAAACGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* *
3311971 ATGAGTC-AGAAAATAAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3312006 ACGAGTC-AGAAAATAAAAATGACTC-AAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * *
3312041 ATAAGTC-AGAAAATGAAAATGACTTG-GATCAAACC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * * * *
3312076 CTGGGTTC--GAAAATGAAAACGA-CTAAGATTAAATC
1 ATGAG-TCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3312111 ACGAGTTAA-AAAATGAAAAATGAGT-G-GTATTAAATCAC
1 ATGAGTCAAGAAAATG-AAAATGA-TCGAG-ATTAAA-C-C
* * *
3312149 AT--GTCATAG-AAATAAAAACGATCGAGAATAAAACC
1 ATGAGTCA-AGAAAATGAAAATGATCGAG-ATTAAACC
* * **
3312184 ATGAGTCAGGAAATGAAAACGATAATGAAAATTATCGAAATTAAATT
1 ATGAGTC----AA-G---A--A-AATGAAAATGATCGAGATTAAACC
* * * * **
3312231 ATGTGTC-AGAAAATGAAAAAGATTGGGATTAAAAT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * **
3312266 GTGAGTTAA-AAATTGAAAATGATC-AGAATTAATGC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3312301 ACGAGT-TAGAAAATGAAAACGA-CTGGGACTAAAGCC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAA-CC
* *
3312337 -TGAGT-GAGAAAATGAAAA-GCA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATG-ATCGA-GATTAAACC
* *** **
3312371 ACGAGTC-AGAAAATGAAAGCAATCGAGATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3312406 ATGAGTCAA-AAAATGAAAAATGATAGGGATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
** ** * * *
3312442 ACAAGTCAA-AAAATGAAAACAATGGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * **
3312477 ACAAGTCAA-AAAATAAAAAAGATAGGGATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * *
3312512 ATGCA-T-AGGAAAATGAAAACAAT-AAGGATTAAAGC
1 ATG-AGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * *
3312547 ATGAGTC-AGAAAATGTAAAACAATGGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
** * * * *
3312583 ACAAGTTAA-AAAGTGAAAATGACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*** ** * **
3312618 GCAAGTCAA-AAAATGAAAACAACTGGA-ATTAAATG
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * *
3312653 ATGAGTCAA-AAAATGAAAATGATCAACATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3312688 ACGAGTCAA-AGAAATAAAAACGATCGAAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
*
3312724 ATGAGTCAA-AAAATGAAAATGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3312759 ACT-AGTCAA-AAAATGAAAATGAT-GTA-ATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCG-AGATTAAACC
** * * *
3312793 ACAAG-CAAGAAAATAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3312828 ATGAGTCTA-AAACTGAAAATGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3312863 ATGAGTCAA-AGAAATAAAAATGAACAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
*
3312899 ATGAGTC-AGAAAATGAAAATGATAG-GAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3312934 AT-AATCAA-AAAATGAAAGTGA-CTAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * * * *
3312968 ACAAGT-AAAAAAATAAAAATGA-CCAGGATTAAGCC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * ** * * * * *
3313003 ATCTGTCAA-AATATAAAAACAAACAAAATTAGATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3313038 ACGAGTCAA-AAAATGAAAAGGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3313073 ATGGGTC-AG-AAATAAAAAT-A-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * ** * *
3313106 ATGGGT-TAGAAAATGAAAACAATCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3313141 ATGAGTCAA-AAAATGAAAATGATC-AGTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * * *
3313176 ATAAGT-TAGAGAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* ** *
3313212 ATGAGTCAA-AAAACGAAAACAATTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3313247 ATGAGTCAAGAAACAAAAATGATAATGAAAATTACTAGAATTAAATT
1 ATGAGTCAAG-----AAAATGAAAATG---A-T-CGAG-ATTAAACC
* * *
3313294 ATGAGT-TAGAAAATGAAAATGAT-AAGGATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * *
3313329 ATAAGT-TAGAAAATGAAAA-CA-CCAAATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3313362 ACGAGTC-ATAAAATGAAAACGATTGGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** *
3313397 TTGAGT-GAGAAAATGAAAACCA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * ** * *
3313432 ACAAGT-TAGAAAATGAAAGCGAT-GGGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3313466 ATGAGTCAA-AAAATGAAAATGATC-AGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* ** * * *
3313501 ATGAGTCAA-AAAATAAAAACAACCAAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3313536 ATGAGTCAA-AAAAAGAAAGATGA-CTTAGATTAAATCAC
1 ATGAGTCAAGAAAATGAAA-ATGATC-GAGATTAAA-C-C
*
3313574 A-G-GTCAA-AAAATGAAAACGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3313607 AT-AGGT-TAGAAAATGAAAATGA-CTGGGATTAAACC
1 ATGA-GTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3313642 ATGGGT-TAGAAAATGAAAACGATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3313677 ATGAGTCAA-AAAATGAAAATGATC-AGTATTAATTCAC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAA-AC-C
* * * * *
3313714 A-G-GT-TAGAGAAATAAAAATGATTGAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * * *
3313748 ACGACT-TAGAAAATGAAAATGATTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3313783 ACGAGTCAAG-AAATGAGAACAAT-AGT-GAAAATGAAA--
1 ATGAGTCAAGAAAAT--GAA-AATGA-TCG-AGATTAAACC
** * * * * *
3313819 ATGA--C-AG-GGATTAAAGCGTGAGTCAAAAAATGTAAAACA
1 ATGAGTCAAGAAAATGAAA--ATGA-TC--GAGAT-T-AAACC
** ** * * * * *
3313858 ATG-GGGATTAAACT-ACAA-G-TCAAAAAGTGAAA--
1 ATGAGTCAAGAAAATGAAAATGATC-GAGA-TTAAACC
* * *
3313890 ATGA-TCGAGATTAAATCATAA-G-TC-A-A--AAA--
1 ATGAGTCAAGA--AAATGAAAATGATCGAGATTAAACC
** * * * **
3313919 ATGAAAACAACTAAAATTAAACAAGA---AG-TTAAAAA
1 ATG-AGTCAA-GAAAATGAAA-ATGATCGAGATTAAACC
* ** * * *
3313954 ATGA--AAATGACTGGCATTAAATCATGAGT-GAAAGA-AATAACA
1 ATGAGTCAA-GA---AAATGAAA--ATGA-TCG--AGATTA-AACC
* * **
3313996 ATGA--CTA-AAATTGAATAACAAGTC-A-A--AAA-C
1 ATGAGTCAAGAAAATGAA-AATGA-TCGAGATTAAACC
* * * * ** * * *
3314026 -TGAAAGTGATCG-AGAT-TAAACCA-CTAG-TCAAA-A
1 ATG--AGTCA-AGAAAATGAAAATGATCGAGATTAAACC
** * * * * *
3314059 ATTGAAAACAATTG-AAATTAAATCATGAGTCAAAAAATAAA-A
1 A-TG-AGTCAA--GAAAATGAAA--ATGA-TC-GAGATTAAACC
* * *
3314101 ATTA--C-AG-AAATG-AAATCAT-GAG-TCTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGAT-TAAACC
** * ** * * *
3314131 -TGAAAACAACAGGGATTAAACCATGAGTTAGAAAATTAAAACAAC
1 ATG-AGTCAAGA-AAATGAAA--ATGA--TCG-AGATT-AAAC--C
* * * * *** * *
3314176 AGGGATTAAACCATGTGTTAGAAAATGAAGACAACGGGGATTAAACC
1 A-TGAGTCAA-GA--AAAT-GAAAAT---G--ATC-GAGATTAAACC
* * *
3314223 ATGAGTCAA-AGAAATAAAAATGA-CCAGAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
** * *
3314259 ACAAGTC-AGAAAATGAAAATGA-CTAGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** ** * *
3314294 ACAAGTC-AGAAAAT-AAAAACAACCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3314329 ACGAGTC-AGAAAAT-ACAAACGACCTG-GATTAAATC
1 ATGAGTCAAGAAAATGA-AAATGATC-GAGATTAAACC
** * *
3314364 ATGAGTCAA-AAAAT-AAAAACAACTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3314399 ATGGGT-TAGAAAATGAAAATGA-CTGAGATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * ** * *
3314434 ATGGGT-TAGAAAATGAAAACCACCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3314469 ATGAGTCAA-AAAATAAAAATGATC-AGTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3314504 A-GAAGTC-AGAGAAATAAAAATGATCAAAATTAAATC
1 ATG-AGTCAAGA-AAATGAAAATGATCGAGATTAAACC
*
3314540 ATGAGTC-AGAAAATGAAAATGATAG-GATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * **
3314574 ACGAGTCAGGAAACGAAAATGATAACAAAAATTATCAAAATTAAATT
1 ATGAGTC----AA-GAAAATG------AAAATGATCGAGATTAAACC
** * * * *
3314621 ACAATTCAA-AAAATGAAAATGA---AAATGAAA-A
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3314652 ATGAGTCAA-AAAATGAAATTAAATGA-CGAAATTAAAGC
1 ATGAGTCAAGAAAATG--A--AAATGATCGAGATTAAACC
*
3314690 ATGAGTCAA-AAAATGAAAATGA-CCAGAATTAAAGCAC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAA-C-C
* * ** * **
3314727 A-AAGTC-AGAACATGTAAAACAAT-GGGATTAAATT
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* *
3314761 ATAAGTCAA-AAAGTGAAAATGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3314796 ATAAGTCAA-AAAATGAAAATGACTGGCAAAATTAAACA
1 ATGAGTCAAGAAAATGAAAATGA-T--CGAGATTAAACC
** * * *
3314834 ACAAGTCAA-AAAATGAAAATGATCGACATTTATCAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAAC-C
* * * *
3314870 A--AGTCAAAAAAAT--AAATGATCGAAATCAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3314902 ATGAGTCAA-ACAATGAAAAAGA-CTTAGGTTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3314937 ACT-AGTCAA-AACACGAAAATGA-CCATAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3314972 ATGAGTCAA-AAAAT-AACAATGA-CCAAATTAAATC
1 ATGAGTCAAGAAAATGAA-AATGATCGAGATTAAACC
** * * *
3315006 ACAAGTCTA-AAACTGAAAATGA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3315041 -TCAAGT-TAGAAAATGAAAAAGACCGAGATAAAACC
1 AT-GAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* **
3315076 ACT-AGTTAA-AAAATGAAAAACAATCGAGATTAAACC
1 A-TGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* **
3315112 ATGAGTC-AGAAAATGAAGACA-AAGGGA-ATTAAACC
1 ATGAGTCAAGAAAATGAA-A-ATGATCGAGATTAAACC
* * * * *
3315147 ACGACTTAA-AGAAAT-AAACATGA-CTAGAATTAAATC
1 ATGAGTCAAGA-AAATGAAA-ATGATCGAG-ATTAAACC
** * *
3315183 ACAAGTC-AGAAAATGAAAACGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * **
3315218 ATGAGT-TAGAAATTGAAAAAGATC-AGGATTAAATT
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3315253 GTGAGTCAA-AAAAT-AGAAACGA-CTAGAATTAAACC
1 ATGAGTCAAGAAAATGA-AAATGATCGAG-ATTAAACC
* * *
3315288 ATGAGTCAA-AAAATAAAAATGACCCGA-ATTAAATC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* *
3315323 ATGAGTC-AGAAAATGAAAAGGA-CAAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3315358 AAGGGTC-AGAAAATGAAAATGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3315393 ATGGGTCAA-AAAATGAAAATGATTGAAATTAAACCCC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAA--CC
** * * **
3315430 GAGTCAGGAAACAAAAATGATAATGAAAATTATC-AGAATTAAATT
1 -A-T---GAGTC---AA-GAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3315475 ATGGGT-TAGAAAATGAAAATGA-AGAGGATTAAATGC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAA-CC
* * * * **
3315511 -T-AGTTAA-AAAATGAAAA-CAACTAGAATTAAGGC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* ** * *
3315544 ATAAGTC-AGAAAAAAAAAAATGA-CTGGGACTAAACC
1 ATGAGTCAAG-AAAATGAAAATGATC-GAGATTAAACC
* * ** *
3315580 TTGAGT-GAGAAAATGAAAACCA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** *** * **
3315615 ATGA-TTTAGAAAATGAAAGCAATCGGGATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3315650 ATGAGTC-AGAAAATGAAAAATGATTGGGATTATACT
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* ** *
3315686 ACGAGTCAA-AAAATGAAAACAATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3315721 ACAAGTTAA-AAAATAAAAATGA-C-AGGA-TAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3315754 AGTGCA-TCTA-AAAATGAAAAAGA-CAGGGATTAAATC
1 A-TG-AGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3315790 ACGA-ACCAG-AAATGTAAAATAAT-AATGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
** * * *
3315825 ACAAGTCAA-CAAGTGAAAATGATCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3315860 ACAAGT-TAGAAAATGAAAATGA-CCAGAATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * *
3315895 ACGAGTCAA-AAAATGAAAATGACCG-GCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * *
3315930 ACAAGTCAA-AGAAAT-AAACATGACTGGA-ATCAAATC
1 ATGAGTCAAGA-AAATGAAA-ATGA-TCGAGATTAAACC
** * *
3315966 ACAAGTC-ATAAAATGAAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3316001 ACT-AGTCAA-AAAATGAAAACGATCGAAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3316036 ATGAGTCAA-AAAATAAAAATGACCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * ** * *
3316071 ACGAGTCTA-AAACTGAAAACAACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3316106 ACGAGTCAA-AAAATTAAAACT-A-CAAGGACTAAACC
1 ATGAGTCAAGAAAATGAAAA-TGATCGA-GATTAAACC
* *
3316141 -TCGAG-CCAGAAAATGAAAATGATCGAGATGAAACC
1 AT-GAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3316176 ATCAGTCAA-AAAATGAAAAACGATCGATATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
** * * * *
3316212 ACAAG-CCAGAAAATGAAGATAATGGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3316247 ATGAGTC-AGAGAAGTAAAAATGAACCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATG-ATCGAGATTAAACC
* * * *
3316284 ACGAGT-TAGAAAATGAAAATGATGGAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3316319 ATG-GTCAA-AAAATGAAAACAACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * *
3316353 ACAAGTCAA-AAAATAAAAAAG-GCTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3316388 ATAAGTCAA-AAAATGAAAAAGATCAAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** *
3316423 ACCAATCAA-AAAATGAAAAATGATCGAGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
** * *
3316459 ACAAGTCAA-AAAATGAAAAT-AACAAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3316494 ATGAGTTAGAGAAATAAAATGAAAATGGTCGGGACTAAACC
1 ATGAGTCA-AG----AAAATGAAAATGATCGAGATTAAACC
* ** ** * *
3316535 CTGA-TTGAGAAAATGAAAACCA-CTATGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * ** * * * **
3316570 ACAAGT-TAGAAAACGAAAGCGTTTGGGATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * **
3316605 ACGAGT-TAGAAAATGAAAAATGAT-GAG-TCAAAAA
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * ** * * *
3316639 ATGAAAATTATCG-GCATTAAATCACGAGTCAAAGAAATTAAA--
1 ATG--AGTCA-AGAAAATGAAA--ATGA-TC---GAGATTAAACC
* * * * * **
3316681 ATGA--C--CAAAATCAAATCACGAGTCAAAAAATTAAAATG
1 ATGAGTCAAGAAAATGAAA--ATGA-TC--GAGATT-AAACC
* * * * * * **
3316719 ACTGGATTAAACCACTAGTGAAAAATGAAAAT-GATCAGAATTAAATT
1 A-T-GAGTCAA-GA-AAATGAAAAT-G---ATCG---AG-ATTAAACC
* * * *
3316766 A-CAGTC-AGAAAATAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*** *
3316800 ATGAGTCTCTAAAACTG-AAATGA-CTACGATTAAACC
1 ATGAGTCAAGAAAA-TGAAAATGATCGA-GATTAAACC
* *
3316836 ATGAGTC-AGAAAATTAAAATGA-CAGGGATT-AACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * **
3316870 ATGAGT-TAGAAATTGAAAATGATCGAGAAAAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3316905 ACCAGTTAAG--AATGAAAATGATCGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3316939 ACGAGT-TAGAAAATGAAGACAACAT-G-GATTAAACC
1 ATGAGTCAAGAAAATGAA-A-ATGATCGAGATTAAACC
* * * * * *
3316974 ATGAGTC-AGAGAAGTAAAAAT-AACAATAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGA-GATTAAACC
*
3317010 ATGAGTCAA-AAAATGAAAATGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3317045 ATGAGT-TAGAAAATAAAAATGA-CCAGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3317080 ATGAGT-TAGAAAATAAAAACGA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3317115 ACT-AGTC-AGAAAATAAAAATGACCCAGATAAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3317150 ACGAGT-TAGAAAATGAAAATGGTCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3317185 ATGGGTC-AGAAAACGATAATGACCGAGATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3317220 ATGGGT-TAGAAAATGAAAACGATCGTGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3317255 ATGAGT-TAGAAAATGAAAACGATTG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * * * *
3317290 ACAAAT-TAGAGAAATTAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * * * *
3317326 AGGAGTCCA-AAAA-CAAAA-GCAATTGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATG--ATCGAGATTAAACC
* * * **
3317361 ACGAGTCAAG-AAATGAAAACGATAATGAAAATTACCTAAATTAAATT
1 ATGAGTCAAGAAAATG---A--A-AATG---A-T--CGAGATTAAACC
* *
3317408 ACGAGTC-AGAAAATGAAAATGA-CTAGGATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * *
3317441 ATGCAAATGAA-AAAATGAAAATGACCAAAATTAAATC
1 ATG--AGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3317478 ACGAGTCAA-AAAAAGAAAATGGTCGAG-TCTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGAT-TAAACC
* ** ** * *
3317513 GTGA-TTGAGAAAAT-AGAAACCA-CTAGGATTAAATC
1 ATGAGTCAAGAAAATGA-AAATGATCGA-GATTAAACC
** ** * **
3317548 ACAAGTCAA-AAAATGAAAGCGATCGGGATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3317583 ATGAGT-TAGAAAATGAAAAACGATAGTCAAAAAATAAA-A
1 ATGAGTCAAGAAAATG-AAAATG--A-TC-GAGATTAAACC
* ** * *
3317622 ATGA--CCAGCATTAAATCACGAGTCAAA-GATATAAAAACTACTAGAATCA
1 ATGAGTCAAG-A--AAAT---GA---AAATG--ATCGAGA-T--TA-AA-CC
* *
3317671 AATCATGAGTCAA-AAAATTAAAATGA-CCAGGATTAAACC
1 A----TGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3317710 ACT-AGCCAACAAACA--AAAATGACTGGA-ATTAAATC
1 A-TGAGTCAAGAAA-ATGAAAATGA-TCGAGATTAAACC
* * * * *
3317745 ATGAGTC-AGAAAATAAAAATGACCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3317780 ATGCA-CCTA-AAACTAAAAATGA-CCAGGATTAAACC
1 ATG-AGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3317815 ACGAGTCAA-AAAATTAAAACGA-CAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3317850 ATGAGTCAA-AAAATGAAAACGACCAAAATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3317885 ACCAGTCAA-AAACTAAAAAACGATCG-GATTAAACC
1 ATGAGTCAAGAAAAT-GAAAATGATCGAGATTAAACC
* * * * * *
3317920 ACGAGTTAA-AAAATGAAGA-CAACGGGGATTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3317954 ATGAGTTCAA-AGAAATAAAAGATGA-CCAGAATGT-AATC
1 ATGAG-TCAAGA-AAATGAAA-ATGATCGAG-AT-TAAACC
* * *
3317992 ATGAGTGAA-AAAATGAAACA--AT-GGGAATTAAACT
1 ATGAGTCAAGAAAATGAAA-ATGATCGAG-ATTAAACC
* ** * *
3318026 ACGAGTCAA-AAAA-GAAAACAATC-AGGCTTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3318060 ATGAGTC-AGAAAAT-AGAAATGA-CTAGGGTTCAACC
1 ATGAGTCAAGAAAATGA-AAATGATCGA-GATTAAACC
* ** ** * * *
3318095 ATGAGT-TAGAAATAAAAAACAAAACTTG-GATGGAATCC
1 ATGAGTCAAGAAA-ATGAAA-ATGA-TCGAGAT-TAAACC
* *
3318133 -TAAGTC-AGAAAAT-AAAA-GA-CCAGGATTTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGA-GA-TTAAACC
* * * *
3318165 TTTAGTC-AG-AAATGAAAATGATTGGGATTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3318198 ATG-GT-TAGAAAATGAAAATAACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** *
3318232 ACGAGTC-A-TAAATGAAAAACAATCG-GTATTAATCAC
1 ATGAGTCAAGAAAATG-AAAATGATCGAG-ATTAAAC-C
* * * * *
3318268 A--AGTCAA-AGAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** *
3318301 ACGAGTCAA-AATATGAAAACAATCGAGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3318336 ATGATTCAGGAAATGAAAATGATAATGAAAATTAC-AGGAATTAAATT
1 ATGAGTC----AA-GAAAATGAAAATG---A-T-CGA-G-ATTAAACC
** * * **
3318383 ACAAGTCAA-AAAATAAAAATGATCGGGATTAAAAT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3318418 GTGAGT-TA-AAAATGAAAACT-ATTGAAATTTAAA-C
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGA-TTAAACC
* * * *
3318452 ACGAGTCAAAAAAATGAAAATGA-CCAGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * *
3318488 CTTAGT-GAGAAAATGAAAACT-A-CTAGTGTTAAAGC
1 ATGAGTCAAGAAAATGAAAA-TGATCGAG-ATTAAACC
* * *
3318523 ATAAGTC-AGAAAATGAAAGTGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3318558 ACGAGTTAA-AAAATGAAGA-CAACGGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3318593 ATGAGTCAA-AGAAAT-AAAGATGA-CCAGAATTAAATC
1 ATGAGTCAAGA-AAATGAAA-ATGATCGAG-ATTAAACC
* ** * *
3318629 ATGAGTGAA-AAAATGAAAACAAT-GGGAATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* ** *
3318664 ACGAGTCAA-AAAATGAAAACAATC-AGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
*
3318699 ATGAGTC-AGAAAAT-AGAAATGA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGA-AAATGATCGA-GATTAAACC
* * ** * * *
3318734 ATGAGT-TAGAAAATAAAAACAACTTG-GATGGAATCC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGAT-TAAACC
* * * *
3318770 -TAAGTC-AGAAAATAAAAACGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3318804 TTTAGTC-AGAAAATGAAAATGATTGGGATTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * * *
3318838 ATGGGT-TAGAAAATGAAAACAACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** *
3318873 ACGAGTC-ATAAAATGAAAACAATCG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3318908 ACAAGTCAA-AGAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * ** *
3318944 ACGAGTCAA-AATATGAAAACAATCGAGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3318979 ATGATTCAGGAAATGAAAATGATAATGAAAATTAC-AGGAATTAAATT
1 ATGAGTC----AA-GAAAATGAAAATG---A-T-CGA-G-ATTAAACC
** * * * **
3319026 ACAAGTTAA-AAAATAAAAATGATCGGGATTAAAAT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3319061 GTGAGT-TA-AAAATGAAAACT-ATTGAAATTTAAA-C
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGA-TTAAACC
* * * *
3319095 ACGAGTCAAAAAAATGAAAATGA-CCAGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * *
3319131 CTTAGT-GAGAAAATGAAAACT-A-CTAGTGTTAAAGC
1 ATGAGTCAAGAAAATGAAAA-TGATCGAG-ATTAAACC
* * *
3319166 ATAAGTC-AGAAAATGAAAGTGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3319201 ACGAGTTAA-AAAATGAAGA-CAACGGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3319236 ATGAGTCAA-AGAAAT-AAAGATGA-CCAGAATTAAATC
1 ATGAGTCAAGA-AAATGAAA-ATGATCGAG-ATTAAACC
* ** * *
3319272 ATGAGTGAA-AAAATGAAAACAAT-GGGAATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* ** *
3319307 ACGAGTCAA-AAAATGAAAACAATC-AGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
*
3319342 ATGAGTC-AGAAAAT-AGAAATGA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGA-AAATGATCGA-GATTAAACC
* ** * * *
3319377 ATGAGT-TAGAAAAT-AAAACAACTTG-GATGGAATCC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGAT-TAAACC
* * * *
3319412 -TAAGTC-AGAAAATAAAAACGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3319446 TTTAGTC-AGAAAATGAAAATGATTGGGATTAAA-C
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * * *
3319480 ATGGGT-TAGAAAATGAAAACAACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** *
3319515 ACGAGTC-ATAAAATGAAAACAATCG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3319550 ACAAGTCAA-AGAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * ** *
3319586 ACGAGTCAA-AATATGAAAACAATCGAGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3319621 ATGATTCAGGAAATGAAAATGATAATGAAAATTAC-AGGAATTAAATT
1 ATGAGTC----AA-GAAAATGAAAATG---A-T-CGA-G-ATTAAACC
** * * **
3319668 ACAAGTCAA-AAAATAAAAATGATCGGGATTAAAAT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3319703 GTGAGT-TA-AAAATGAAAACT-ATTGAAATTTAAA-C
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGA-TTAAACC
* * * *
3319737 ACGAGTCAAAAAAATGAAAATGA-CCAGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3319773 CTTAGT-GAGAAAATGAAAACT-A-CTAGTGTTAAACC
1 ATGAGTCAAGAAAATGAAAA-TGATCGAG-ATTAAACC
* * * * **
3319808 ATAAGTC-AGAAAATGAAAGTGATTGGGATTAAAAG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3319843 ATGAGTC-AGAAAATGAAAAATGACCGAGATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * **
3319879 ACGAGTCAA-AAAATGAAAATAATCGTGATTAAATT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3319914 ATGAGTCAA-AAAATAAAAATGA-CAGGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3319949 ATGCA-TCAA-AAAATGAAAACGA-CAGGGATTAAAGC
1 ATG-AGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3319984 ATGAGTCAA-AAAATGTAAAA-CAACAGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
** ** * *
3320020 ACAAGTCAA-AATGTGAAAATGACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3320055 ATGAGTCAA-AAAATGAAAA-CAACCATAATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3320090 ATAAGTCAAAAAAATGAAAATGACTTG-CATTAAATC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
** * * * * * * * *
3320126 ACAAGTCAAAAAAATAAAAACGACCAAAATCAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3320162 ACGAGTCAA-AAAATGAAAATGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * *
3320197 ATGAGTCAA-AAAATGAAAACAATCGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3320232 ATGAGTC-A-AAAATGAAAA-CAACTAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * * *
3320266 ACAAGTTAA-AAAATAAAAATGACTCGA-ATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGA-TCGAGATTAAACC
* * *
3320301 ATGAGTCAA-AAAATGACAACGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * **
3320336 ATGGGTC-AG-AAATAAAAATGA-CTAAGATTAAATT
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * * ** *
3320370 GGGGGT-TAGAAAATGAAAACAATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3320405 ATGAGTCAA-AAAATGAAAATGATC-AGTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * *
3320440 ACAAGTC-AGAGAAATAAAAATGATTGACATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * * *
3320476 ACGAGTC-AGAAAACGAAAATAATCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * **
3320511 ACAAGTCAAGAATTGAAAACT-ATAATGAAAATTACTGAAATTAAATT
1 ATGAGTC---AA--GAAAA-TGAAAATG---A-T-C-GAGATTAAACC
* *
3320558 ATGAGTCAA-AAAATGAAAATGA-CTGGGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3320593 ATGAGT-TA-AAAATGAAAACGACCGAAATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * *
3320627 ACAAGTCAA-AAAATGATAATGTTTGGGATTCAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*** * * *
3320662 ACT-AGTCAA-AAAGCAAAAATGGTTG-GAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * *
3320697 ATGAGTC-AGAAAATAAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGAAAAT-GAAAATGATCGAGATTAAACC
* * * *
3320733 ATGAGTCTA-AAATTGAAAACGATCTAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3320768 ACGAGTC-AG-AAATTAAAATGA-CAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3320802 ACGAGTCAA-AAATTG---ATGA---AGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * *
3320831 ACCAGTC-AGAAAATGAAAAAAGATCAAGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * * *
3320867 -TCGAGT-TAGAAAATGAAGA-CAACAGGGATTAAACC
1 AT-GAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * *
3320902 ATGAGTC-AGAGACATAAAAATGATC-AGAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* *
3320938 ATGAGT-TAGAAAATGAAAATGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3320973 ATGAGT-TAGAAAATGAAACTGATCTAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3321008 ATGAGT-AAGAAAATAAAAACGA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3321043 ATGAGTC-AGAAAA--AAAATGACCCAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * *
3321076 ACGAGTCAA-AAAATGAAAACAACCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * *
3321111 ATGGGCCAA-AAAAT-AAAAACAACAGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3321146 ACGAGTC-AGAAAATGAAGACGATTG-GAATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3321181 ATAAGTCAA-AGAAA--AAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
** * *
3321215 ATGAGTCAA-AAAACAAAAAAGTTCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3321250 ATGAGTTAGGAAATGATAACGATAATGAAAATTATC-AGAATTAAATT
1 ATGAG-T---CAA-G---A--A-AATGAAAATGATCGAG-ATTAAACC
* * **
3321297 ATAAGTCAA-AAAATGAAAATGACCGAGATTAAAAT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3321332 ACGAGTCAA-AAAATGAAAATGA-CTGGGACCAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * ** * *
3321367 CTGAGT-GAGAAAATGAAAACCACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * *
3321402 ACGAGTC-AGAAAATGAAAGCGATCAAGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3321437 ACT-AGTCAA-AAAATAAAAAAATGATCGAAATTATACC
1 A-TGAGTCAAGAAAAT--GAAAATGATCGAGATTAAACC
** * * *
3321474 ACAAATCAA-AAAATGAAAACGA-CTGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3321509 ACT-AGTCAA-AAAAT-AAAAGTAATAGGGATTAAACA
1 A-TGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
* * *
3321544 ATGCA-TCGAA-AAAA-GAAAACGA-CAAAGATTAAAGC
1 ATG-AGTC-AAGAAAATGAAAATGATC-GAGATTAAACC
** * * *
3321579 ACAAGTCAA-AAAATGTAAAA-CAACGGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
* *
3321615 ATAAGTCAA-AAAGTGAAAATGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3321650 ATGAGTCAA-AAAATGAAAATAAT-TAGAATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3321685 AGGAGTTAA-AAAATGGAAATGA-CAAGCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * **
3321720 ATGAGTCAAAAAAATAAAAATGA-CCAGAATCAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3321756 ACGAAT-TAGAAAATGAAAATGATTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** *
3321791 ACT-AGTCAA-AAAATGAAAACAATCGAAATTAAATCC
1 A-TGAGTCAAGAAAATGAAAATGATCGAGATTAAA-CC
* * * * *
3321827 -CGAGTC-AGAAAAT-AAGAATGACCAAAATTAAATC
1 ATGAGTCAAGAAAATGAA-AATGATCGAGATTAAACC
** ** * * * *
3321861 ACAAGTC-TCAAACTGAAAACGAGCGAGATTAAAAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** * *
3321896 ATAAGTC-AGAAAATTAAAATGAAAGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3321931 ATGGGT-TAGAAAATGAAAACGACCAAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* **
3321966 -TCTAGTC-AGAAAATGAAAAACAATC-AGGATTAAACC
1 AT-GAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * * *
3322002 AAGAGTC-AGAAAATGAAAA-CAACGGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3322037 ACGAGTCAA-AGAAATGAAAATTA-CTAGAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* * *
3322073 ACG-GTC-AGAAAATGAAAATGATGGAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3322107 ATGAGTCAA-AAAATGAAAAACGATC-ATGATTAAATC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * * *
3322143 ATGAATCAA-AAAATAAAAATGACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3322178 ACGGGTCAA-AAAGTAAAAACGATCGA-ATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3322212 ATGAGTCAA-AAAATGAAAATAATCGGGATTAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC--G---AGATTAAACC
* *
3322252 GTGAGTCAA-AAAATGAAAATGA-CTAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3322287 ATGGGTCAA-AAAATGAAAACGATCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * **
3322322 ACGAGTCAA-AAAATGAAAACAATCGATATTAAGTC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * *
3322357 ACAAGTCAA-AGAAATAAAAATGATCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
** *
3322393 ACAAGTCAA-AAAATGAAAATGATC-ATGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * **
3322428 ATGAGTCAAGAAATGAAAATGATAATGAAAATTATCAAAATTAAATT
1 ATGAGTC----AA-G---A--A-AATGAAAATGATCGAGATTAAACC
* * * *
3322475 ATAAGTCAA-AAAATAAAAATGACCGGGATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3322508 ATGCAAGTTAA-AAAATGAAAATGATCGAAATTAAAGC
1 ATG--AGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3322545 ACGAGTCAA-AAATTGAAAA-CAACTG-GTACTAAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAG-A-TTAAACC
* * ** * * *
3322581 -TAAGT-GAGAAAATGAAAACCACCAAGATCAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** ** * *
3322615 ACAAGTCAA-AAAATGAAAGCGATCGGGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3322650 ACTG-GTCAA-AAAATGAAAAACAACCAAGATTAGACC
1 A-TGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * * *
3322686 ACGAGTCAA-AAAATGAAAACGATCGGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3322721 ATGGGTCAA-AAACTAAAAATGATAGGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3322756 ATGTGT-AGGAAAATGGAAATGATAGGGATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * *
3322791 ATGAGT-AAAAAAATGTAAAACAAT-AAGGATTAAAAC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
** * ** *
3322827 ACAAGTTAA-AAGGTGAAAATGACCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * * **
3322862 ACAAGTCAA-AAAATAAAAATGACCAAAATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3322897 ATGAG-CGAA-AAAATGAAAATGA-CTAGCATTAAATC
1 ATGAGTC-AAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3322932 ATGAGTCAA-AGAAATAAAAATGATTG-GAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
** * *
3322968 ACAAGTCAA-AAAAT-CAAATGA-CCAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3323002 ACT-AG-CAA-AAAATGAAAA-CAACTAGAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * * * *
3323036 ACAAGTCAA-AATATAAAAATGACCAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3323071 ACGAGTCTA-AAACTAAAAATGATC-AGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3323106 ATGAGTCAA-AAAATTAAAACGA-CAAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * ** *
3323141 ATGAGTCAA-AAAATGAAAACGACCTTGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * *
3323176 ACCAGTC-ATAAAATAAAAAATGATTGGGATTAAACC
1 ATGAGTCAAGAAAAT-GAAAATGATCGAGATTAAACC
* * ** * * *
3323212 ACGAGTCAA-AAAATGAAGACAATGGGGATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3323247 ATGAGTC-AGAGAAATAAAAATGATC-AGAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* *
3323283 ACGAGTC-A-AAAATGAAAATGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* ** *
3323317 ACGAGTCAA-AAAATGAAAACAATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3323352 ACGAGTCAA-AAAATAAAAATGACCAAGAATTAAGCT
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3323388 ACGAGTCAA-AAAATAAAAATGACCTAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** *
3323423 ACGAGT-TAGAAAATGAAAACAATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** *
3323458 ACAAGTCAA-AAAATGAAAATGA-CTGGGATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * * *
3323491 ATGCATGTTAA-ATAATGAAAATGACCGAAATTAAAGC
1 ATG-A-GTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3323528 ACT-AGT-TAGAAAATGAAAATGA-CTAGGACTAAACC
1 A-TGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * ** * * *
3323563 CTGAGT-GAGAAAATGAAAACCACCAAGATTAAGCC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *** * **
3323598 ACGAGTC-AGAAAATGAAAGCAATCAAGATTAAATG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3323633 GTGAGTTAA-AAAATGAAAAACGA-CTGGGATTACACC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
* * * *
3323669 ACGAGTC-AGAAAATCAAAATGATCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * **
3323704 ATGA-TCAA-AAAATAAAAATGAAAGGGATTAAAAA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * *
3323738 AT-ACGTC--GAAATATGAAAACAATATG-GATTAAAGC
1 ATGA-GTCAAGAAA-ATGAAAATGAT-CGAGATTAAACC
* * * *
3323773 ACGAGTCAA-AAAATGTAAAA-CAACAAGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
** *
3323809 ACAAGTCAA-AAAGTGAAAATGA-CTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * **
3323844 ATGAGTCAA-AAAATGAAAATGATCAAAATTAAAAG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** *
3323879 ATGAGTCAA-AAAATGAAAACAAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* ** * * *
3323914 ACGAGTC-AGAAAATGAAAACAACCAAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3323949 ATGAGTCAA-AAAATGAAAACGACCAAGATTAAGCC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3323984 A-CAGGT-TAGAAAATGAAAATGACCAAGATTAAATC
1 ATGA-GTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3324019 AT-A-TC-AGAAAATAAAAATGCTAG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * *
3324052 ACAAGTCAAAAAAAT-AAAA-GATGCGAAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGAT-CG-AGATTAAACC
* * *
3324088 ATGAGTCAGAAAAAAATGAAAAAGGTC-ATGATTAAACC
1 ATGAGTC--AAGAAAATGAAAATGATCGA-GATTAAACC
* * * **
3324126 ACGAGTCAAGAAATAAGAAACAATAATGAAAACATCGAAATTAAATT
1 ATGAGTCAAGAAA-ATG----AA-AATG-----ATCGAGATTAAACC
* * * *
3324173 A-CAAT-AAAAAAATGAAAATAATCG-GATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3324204 ATGCAAGT-TAG-AAATAAAAATGACCTG-GAATTAAAGCT
1 ATG--AGTCAAGAAAATGAAAATGATC-GAG-ATTAAA-CC
* * *
3324242 ATGAGT-ACA-AAAATGAAAATGACTGGGGACTAAACC
1 ATGAGTCA-AGAAAATGAAAATGA-TCGAGATTAAACC
* * * ** * *
3324278 -TTAGTGAA-AACATGAAAACCA-CCAGGGTTAAAACCC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATT-AAA-CC
* *** *
3324314 ACGAGTCAA-AAAATTGAAAGCAATC-AGGA-TAAACG
1 ATGAGTCAAGAAAA-TGAAAATGATCGA-GATTAAACC
* *
3324349 ATGAGTCAA-AAAATGAAAACATGA-CTAGGATTATACC
1 ATGAGTCAAGAAAATG-AAA-ATGATCGA-GATTAAACC
* * *
3324386 ATGAGTCAA-AAAATGAAAAT-A-CACAGGTTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3324420 ACGAGTCAA-AAAATTAAAATGA-CAGGGAGTAAACAAC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAAC--C
* * * *
3324457 A-CA-TCAA-AAAATGAAAACGA-CAAGAATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3324490 ATGAGTCGA-AAAATGTAAAATAATGGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * *
3324526 ATAAGTCAA-AAGGA-GAAAATGACCGAGATTAAACC
1 ATGAGTCAAGAA-AATGAAAATGATCGAGATTAAACC
* * * * * * **
3324561 ATAAGT-TAGCAAATGAAAACT-ACCAAAATTAAATG
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
** * * *
3324596 ACAAGTTAA-AAAATGAAAATGA-CCAGCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * *
3324631 ATGAGTCAA-AGAAATAAAAATGA-CTAGAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
* * *
3324667 ACGAGT-TAGAAAATGAAAATGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * **
3324702 ACT-AGTCAA-AAAATGAAAA-CAACTAGAATTAAATT
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * **
3324737 ATGAGTCAA-AAAATAAAAATGACCGAAATTAAATT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * * ** * * *
3324772 ACAAGCCAA-AAACTAAAAACAACCTAGATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * ** * *
3324807 ATGAGGCAA-CAAATTAAAACAATAGCGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3324842 ATGAGTC-AGAAAATGAAAATG-TCCAACATGAAACC
1 ATGAGTCAAGAAAATGAAAATGAT-CGAGATTAAACC
* *
3324877 ACT-AGT-TAGAAAATGAAAAACGATCGAGATTAAACC
1 A-TGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * ** * *
3324913 AT-ACATC-AGAAAATGAAGACAATGGGGATTAAACC
1 ATGA-GTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3324948 ACGAGTCAA-AGAAAT-AAAAGTGACCAAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAA-TGATCGAGATTAAACC
* * * * *
3324984 GTGAGTTAA-AAAATTAAAAAAGAT-GGGAATTAAACC
1 ATGAGTCAAGAAAA-TGAAAATGATCGAG-ATTAAACC
* *
3325020 ACGAGTC-AGAAAATGAAAAATGA-CTGAGATTAAATC
1 ATGAGTCAAGAAAATG-AAAATGATC-GAGATTAAACC
* * * * *
3325056 ACGAGTCAA-AAAATAAAAAAGACCAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3325091 ATGAGTC-AGAAAATAAAAATGACCCAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3325126 -TCGAGTCAA-AAAATGAAAACGA-CCAGGATTTAACT
1 AT-GAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3325161 ATGGGTCAA-AAAATAAAAAATGATCGGGATTAAACC
1 ATGAGTCAAGAAAAT-GAAAATGATCGAGATTAAACC
* * * * * *
3325197 ATGGGT-TAGAAAATTAAAACGACCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3325232 ATAAGTCAA-AAAAGTGAAAACGATC-AGTATTAAATC
1 ATGAGTCAAGAAAA-TGAAAATGATCGAG-ATTAAACC
** * * * *
3325268 ACAAGT-TAGAGAAATAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* *
3325304 ATAAGTC-AGAAAATGAAAACGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3325339 ATGAGTCAGGAAACGAAAA-CAATAATGAAATTACCGAAATTAAATT
1 ATGAGTC----AA-GAAAATGAA-AATG--A-T--CGAGATTAAACC
* * *
3325385 ACGAGT-AAGAAAATGAAAATG-GCCAGGATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3325418 ATGGAGTTAA-AATATGAAAATGATCGAAATTAAAGC
1 AT-GAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * *
3325454 ATGAGT-TAGAAAATGAAAATGAGAGGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * ** ** * * *
3325489 CT-AATTGAGAAAAT-AAAACCACCAAGATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * **
3325523 ATGAGT-TAGAAAAT-AAAAGCGATTGGGAATAAATG
1 ATGAGTCAAGAAAATGAAAA-TGATCGAGATTAAACC
** * * *
3325558 ACAAGTCAA-AAAATGAAAGA-CAACTGGGA-TAATACC
1 ATGAGTCAAGAAAATGAAA-ATGATC-GAGATTAA-ACC
** * *
3325594 ACAAGTCAA-AAAATAAAAATGATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3325629 ATGAGTTAA-AAAATAAAAATGATAGGGATTAAACAAC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAAC--C
* * *
3325666 AT--GTCAA-AAAATGAAATTGA-CAAGGATTAAAGC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * *
3325699 ATAAGT-AAGAAAATGTAAAA-CAACAAGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
** ** *
3325735 ACAAGTCAA-AAAGGGAAAATGACCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** ** * *
3325770 ACAAGTC-AGAAAACAAAAATGA-CCAGAATTAAACG
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * * *
3325805 ATGAGCCAA-AAAATGAATATGACCAACATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3325840 ACGAGTCAA-AGAAAT-AAAATGACCGAAATCAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
** *
3325875 ACAAGTC-A-AAAATGAAAATGAT-TAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* *
3325909 ACT-AGTC-A-AAAATGAAAATGAT-TAGAATTAAATC
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * *
3325943 ATGAGTC-AGAAAATAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * *
3325978 ATGAGTTTA-AAATTGAAAATGATTGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3326013 ATAAGTCAA-AAAATTAAAACGA-CAAGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** * * * *
3326048 ACAAATCAA-AGAATGAAAATGATCGAGGTGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** *
3326083 ACCAGTCAA-AAAATGAAAATGGATCGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAAT-GATCGAGATTAAACC
** * * * *
3326119 ACAAATCAA-AAAATGAAAATAATGGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3326154 ATAAGTC-AGAGAAATAAAAATGACCCA-ACTTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAGA-TTAAACC
* *
3326190 ATGAGTCAA-AAAATGAAAATGATGGAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3326225 ATGAGT-TAGAAAATGAAAATGA-CTAGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * *
3326260 ACGAG-CTAGAAAATAAAAAAGACCGAGATTATACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3326295 ATGAGTC-AGAAAATAAAAATGACCCAGATTCAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3326330 A-GAATTC-AGAAAATGAAAA-CAACTGGGATTAAACC
1 ATG-AGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* *
3326365 -T-AGGT-TAGAAAATGAAAATGA-CCAGGATTAAACC
1 ATGA-GTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * *
3326399 ATGGGT-TAGAAAATAAAAAAGA-CAGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* ** *
3326434 ATGAGT-TAGAAAATGAAAAAAAAT-TAGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * *
3326470 ATGGGTC-AGAAAATGAAAATGA-CTAGGATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3326505 ATGGGTTAA-AAAATGAAAATGATCGCA-ATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCG-AGATTAAACC
* * *
3326540 ACGAGT-TAGAAAATGAAAATGATCG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * * * *
3326575 ACAAG-CTAGGGAAAT-AAAATGATCAAAATTAAATC
1 ATGAGTC-AAGAAAATGAAAATGATCGAGATTAAACC
* * **
3326610 ACGAGTTAA-AAAATGAAAATGATTAAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * * **
3326645 ACAAGTCAGAAAATGAAAACGATAATGAAAATTATC-AGAATAAATT
1 ATGAGTC----AA-G---A--A-AATGAAAATGATCGAGATTAAACC
* * *
3326691 ACGAGT-TAGAAAATGAAAATGA-CTGGGATTAAA--
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
** * * * *
3326724 ATGCGAGTTTA-AAAATGAAAATGACCAAAATTAAAGC
1 AT--GAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3326761 ACGAGTC-AGAAAATGAAAACGA-CTGGGACTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * ** * * *
3326796 CTGAAT-GAGAAAATGAAAACCA-CCAGTATCAATCC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * *
3326831 ATGAGTCAA-AAAATGAAAGTGATCGAGATTGAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3326866 ATGAG-CCAGAAAATGAAAAATGATTGGGATTATACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * *
3326902 ATGAGTCAA-AAAATGAAAACGATTGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3326937 ATGAGTCAA-AAAAT-ACAAATGAT-AAGGATTAAACAAC
1 ATGAGTCAAGAAAATGA-AAATGATCGA-GATTAAAC--C
* **
3326974 AT--GTC-AG-AAATGAAAATGA-CAAGGATTAAAGT
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** *
3327006 ATGAGTCAA-AAAATGTAAAACAAT-AAGGATTAAA--
1 ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * * *
3327040 TTGCAAGTCAA-AAACTAAAAATGAACGAGATTAAACC
1 ATG--AGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * * * *
3327077 ACGAGTC-AGAAAATGAAAACAACCAAAATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3327112 ACGAGTCAA-AAAATGAAAATGACCG-GTGTTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * * **
3327147 ATGAGTCAA-AGAAATAAAAATGACCAAAATCAAATT
1 ATGAGTCAAGA-AAATGAAAATGATCGAGATTAAACC
* * *
3327183 ATAAGTC-AGATAATGAAAATGATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* ** * **
3327218 ACT-ACTCAA-AAAACAAAAATGA-CTAGAATTAAATT
1 A-TGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * *
3327253 ATGAGT-TAGAAAAT-ATAAATGACCAAAATTAAATC
1 ATGAGTCAAGAAAATGA-AAATGATCGAGATTAAACC
** * * *
3327288 ATGAGTGTA-AAACTAAAAATGATTGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * *
3327323 ACGAGTCAA-AAAATTAAAA-CAACAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* ** * *
3327358 ATGAGTC-A-AAAATGAAAACGGCCAAGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3327392 GCT-ACT-TAGAAAATGAAAAATGATC-AGGACTAAACC
1 -ATGAGTCAAGAAAATG-AAAATGATCGA-GATTAAACC
* * ** *
3327428 ACGAGTCAA-AAAATGAAGACCA-CAGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3327463 ATTAGTC-AGAGAAATAAAAATGA-CTAGAATTAAATC
1 ATGAGTCAAGA-AAATGAAAATGATCGAG-ATTAAACC
** * *
3327499 ATGAGTC-AGAAAATGAAAACAATGGAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3327534 ATGAGTCAA-AAAATGAAAATGA-CCATGATTAAATCGC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAA-C-C
* * *
3327571 A--AGTCAA-AAAATAAAAAGGAAC-AGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
** ** * * *
3327604 ACAAGTCAA-AAAAT--AAATGGCCTAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3327637 ACGAGTC-ATAAAATGAAAACGA-CTGAGATT-AATC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3327671 ATAAGTC-A-AAAATAAAAATGAT-AAGGATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * * * * *
3327705 ACGCGTC-A-AAAATGGAAAATTATAGAAATTAAAGC
1 ATGAGTCAAGAAAAT-GAAAATGATCGAGATTAAACC
* * * *
3327740 ACGAGTCAA-AAAATGTAAAATAAT-GGGGTTAAACAC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAAC-C
* *
3327776 A--AGTCAA-AAAGTGAAAATGACCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3327809 ATGAGTCAA-AAAATCAAAATGATCAAAATTAAACA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3327844 ATGAGTCAA-AAAATGAAAATGAT-TAGCATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* * * * * *
3327879 ACGAGTCAAAAAAATAAAAATGA-CCAGAATCAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
* *
3327915 ATGAGTCGA-AAAATG-AAATAGATCAAGATTAAACAATC
1 ATGAGTCAAGAAAATGAAAAT-GATCGAGATTAAAC---C
* * * * * * *
3327953 GAAACTAAATCACGAGTCAGAAA-AAAAATGACCAAAATTAAATC
1 ---A-TGAGTCA--AG--A-AAATGAAAATGATCGAGATTAAACC
* * *
3327997 ATGAATCTA-AAACTGAAAATGATCGAGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * * * *
3328032 ACGAGT-TAGAGAATGAAAATGACCGTGATGAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
** * *
3328067 ACCAGTCAA-AAAATGAAAAATGATTGGGATTAAACC
1 ATGAGTCAAGAAAATG-AAAATGATCGAGATTAAACC
* * ** * *
3328103 ACGAGTCAA-AAAATGAAGACAATGGGGATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3328138 ATGAGTCAAAAAAAT-AAGAATGATTGAAATTAAATC
1 ATGAGTCAAGAAAATGAA-AATGATCGAGATTAAACC
* * * *
3328174 ACGAGTC-AGAAAATAAAAATTAT-GGGAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** *
3328209 ACAAGTCAA-AAAATGAAAATGATCGAGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3328244 ATGAGTCAA-AAAATGAAAAT-AACTGAAATTAAACC
1 ATGAGTCAAGAAAATGAAAATGATC-GAGATTAAACC
* * * *
3328279 ACGAGTCAA-AAAATAAAAATGA-CCAGGATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGA-GATTAAACC
* * *
3328314 ATGAGTC-ATAAAATGAAAATGACCGAGATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * * *
3328349 ATGGGTC-AGAAAATAAAAATGATTGGGATT-AACC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * **
3328383 ATGGGT-TAGAAAATGAAAATGATCGAGATTAAATA
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
*
3328418 ATGAGTC-AGAAAATGAAAATGATCG-GTATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAG-ATTAAACC
** * * ** * *
3328453 ACAAGCCAATAAAACAAAAATGATCGAAATTAAATC
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* * *
3328489 ATGAGTC-AGAAAATGAAAACGATTGAGATTAAACT
1 ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
* *
3328524 ATGAATC-AGAAAATGATAATGAT
1 ATGAGTCAAGAAAATGAAAATGAT
3328547 AATGAAAATT
Statistics
Matches: 34840, Mismatches: 8834, Indels: 7642
0.68 0.17 0.15
Matches are distributed among these distances:
23 1 0.00
24 4 0.00
25 19 0.00
26 22 0.00
27 8 0.00
28 30 0.00
29 86 0.00
30 55 0.00
31 170 0.00
32 288 0.01
33 845 0.02
34 3440 0.10
35 20827 0.60
36 6362 0.18
37 725 0.02
38 306 0.01
39 91 0.00
40 148 0.00
41 356 0.01
42 121 0.00
43 78 0.00
44 66 0.00
45 77 0.00
46 155 0.00
47 426 0.01
48 62 0.00
49 21 0.00
50 32 0.00
51 10 0.00
52 3 0.00
53 4 0.00
55 2 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (36 bp):
ATGAGTCAAGAAAATGAAAATGATCGAGATTAAACC
Found at i:3282491 original size:106 final size:104
Alignment explanation
Indices: 3282244--3282602 Score: 242
Period size: 106 Copynumber: 3.4 Consensus size: 104
3282234 AAATGACCTA
* * * * *
3282244 GATTAAAACATGAGTTAAAAAATGAAAATGACCA-GAATTAAAGTATGATCAAAAAATGAAAATA
1 GATTAAACCACGAGTCAAAAAATAAAAATGACCAGGGATT-AAGTATGATCAAAAAATGAAAATA
* * * **
3282308 ACTGGGACTAAACCCTGAGTGAGAAAATGAAAACCATTAG
65 ACTGGGACTAAACCATGAGTCAAAAAATGAAAACCACCAG
* * ** *
3282348 GATTAAACCATGAGTCAAAAAATTAAAACAATC-GGGATTAAGTGATGAGTCAAAAAATGAAAAA
1 GATTAAACCACGAGTCAAAAAATAAAAATGACCAGGGATTAAGT-ATGA-TCAAAAAATG-AAAA
* * * **
3282412 TGACTGGGATTATACCATGAGTCAAAAAATGAAAATGACCAG
63 TAACTGGGACTAAACCATGAGTCAAAAAATGAAAACCACCAG
* ** * ** **
3282454 GGTTGTATCACGAGTCAAAAAATAAAAATGA-CAGGGATTAAACAACA-CATTAGAAAATGAAAA
1 GATTAAACCACGAGTCAAAAAATAAAAATGACCAGGGATTAAGTATGATCA--A-AAAATGAAAA
* * * ** * *
3282517 TGACAGGGATTAAAGGATGAGTCAAAAAAATGTAAAACAACAAG
63 TAACTGGGACTAAACCATGAGTC-AAAAAATG-AAAACCACCAG
* * * *
3282561 GATTACACCACAAGTCAAAAAAGTGAAAATGACC-GTGATTAA
1 GATTAAACCACGAGTCAAAAAA-TAAAAATGACCAGGGATTAA
3282603 ACCACAAGTC
Statistics
Matches: 200, Mismatches: 43, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
103 6 0.03
104 35 0.17
105 37 0.19
106 81 0.41
107 25 0.12
108 15 0.08
109 1 0.00
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.19
Consensus pattern (104 bp):
GATTAAACCACGAGTCAAAAAATAAAAATGACCAGGGATTAAGTATGATCAAAAAATGAAAATAA
CTGGGACTAAACCATGAGTCAAAAAATGAAAACCACCAG
Found at i:3282874 original size:114 final size:114
Alignment explanation
Indices: 3282725--3282948 Score: 421
Period size: 114 Copynumber: 2.0 Consensus size: 114
3282715 AGTCAAAAAA
* * *
3282725 TGAAAATGATCAGAATTAAATCATAAGTTAGAAAATAAAATGACCGAAATTAAATCATGAGTTTA
1 TGAAAATGACCAAAATTAAATCATAAGTTAGAAAATAAAATGACCAAAATTAAATCATGAGTTTA
3282790 AAATTGAAAATGATCGAGATTAAACCACGAGTCAGAAAATTAAAACGAC
66 AAATTGAAAATGATCGAGATTAAACCACGAGTCAGAAAATTAAAACGAC
3282839 TGAAAATGACCAAAATTAAATCATAAGTTAGAAAATAAAATGACCAAAATTAAATCATGAGTTTA
1 TGAAAATGACCAAAATTAAATCATAAGTTAGAAAATAAAATGACCAAAATTAAATCATGAGTTTA
3282904 AAATTGAAAATGATCGAGATTAAACCACGAGTCAGAAAATTAAAA
66 AAATTGAAAATGATCGAGATTAAACCACGAGTCAGAAAATTAAAA
3282949 TGACAAGGAT
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 107 1.00
ACGTcount: A:0.52, C:0.10, G:0.14, T:0.24
Consensus pattern (114 bp):
TGAAAATGACCAAAATTAAATCATAAGTTAGAAAATAAAATGACCAAAATTAAATCATGAGTTTA
AAATTGAAAATGATCGAGATTAAACCACGAGTCAGAAAATTAAAACGAC
Found at i:3283623 original size:36 final size:35
Alignment explanation
Indices: 3283575--3283688 Score: 124
Period size: 36 Copynumber: 3.2 Consensus size: 35
3283565 ACTATCGAGA
3283575 GAAAACAATAGGGATTAAAGCACAAGTCAAAAAAT
1 GAAAACAATAGGGATTAAAGCACAAGTCAAAAAAT
* * *
3283610 GTAAAACAATAGGGATT-ACGCCACGAGTCAAAAAGT
1 G-AAAACAATAGGGATTAAAG-CACAAGTCAAAAAAT
* * * *
3283646 GAAAATGACTA-AGATTAAACCACAAGTCAAAAAAT
1 GAAAA-CAATAGGGATTAAAGCACAAGTCAAAAAAT
3283681 GAAAACAA
1 GAAAACAA
3283689 CCAAAATTAA
Statistics
Matches: 63, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
34 1 0.02
35 29 0.46
36 33 0.52
ACGTcount: A:0.54, C:0.14, G:0.17, T:0.15
Consensus pattern (35 bp):
GAAAACAATAGGGATTAAAGCACAAGTCAAAAAAT
Found at i:3285497 original size:71 final size:70
Alignment explanation
Indices: 3285422--3285560 Score: 188
Period size: 71 Copynumber: 2.0 Consensus size: 70
3285412 AATGACCAAG
* * * * *
3285422 ATTAAATCACGAGTCATAAAATGAAAATGATCAATATTAAATCACAAGTCAAAGAAATAAAAATG
1 ATTAAATCACAAGTCAGAAAATGAAAACGATCAAGATTAAACCACAAGTC-AAGAAATAAAAATG
3285487 ATAAAA
65 ATAAAA
** * *
3285493 ATTAAATCACAAGTCAGAAAATGAAAACGATCAAGATTAAACCATGAGTCAGGAAATGAAAATGA
1 ATTAAATCACAAGTCAGAAAATGAAAACGATCAAGATTAAACCACAAGTCAAGAAATAAAAATGA
3285558 TAA
66 TAA
3285561 TGAAAATTAT
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
70 16 0.27
71 43 0.73
ACGTcount: A:0.55, C:0.11, G:0.13, T:0.21
Consensus pattern (70 bp):
ATTAAATCACAAGTCAGAAAATGAAAACGATCAAGATTAAACCACAAGTCAAGAAATAAAAATGA
TAAAA
Found at i:3285869 original size:32 final size:32
Alignment explanation
Indices: 3285832--3285892 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
3285822 TAAATCATAA
* *
3285832 GTCAAAAAATAAAAATGATAAGGATTAAACAT
1 GTCAAAAAATAAAAACGACAAGGATTAAACAT
* *
3285864 GTCAAAAAATGAAAACGACAGGGATTAAA
1 GTCAAAAAATAAAAACGACAAGGATTAAA
3285893 GTAGAAGTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.57, C:0.08, G:0.16, T:0.18
Consensus pattern (32 bp):
GTCAAAAAATAAAAACGACAAGGATTAAACAT
Found at i:3286001 original size:20 final size:17
Alignment explanation
Indices: 3285975--3286023 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 17
3285965 CACATGTTAG
3285975 AAAATGAAAATGATCAAA
1 AAAATGAAAATGATC-AA
3285993 ATTAAATGAAAA-G-TCAA
1 A--AAATGAAAATGATCAA
3286010 AAAATGAAAATGAT
1 AAAATGAAAATGAT
3286024 TGGCATTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
15 9 0.33
16 1 0.04
17 4 0.15
18 3 0.11
19 1 0.04
20 9 0.33
ACGTcount: A:0.63, C:0.04, G:0.12, T:0.20
Consensus pattern (17 bp):
AAAATGAAAATGATCAA
Found at i:3286056 original size:106 final size:105
Alignment explanation
Indices: 3285798--3286170 Score: 260
Period size: 106 Copynumber: 3.6 Consensus size: 105
3285788 ATACTGTGAA
* ** * * * *
3285798 TCAAAAAATGAAAAGGA-CTGTGATTAAATCATAAGTCAAAAAATAAAAATGA-TAAGGAT-TAA
1 TCAAAAAATGAAAATGATC-GAAATTAAATCACAAGTCAAAAAATAAAAATGACCAA-AATCAAA
* * ** ** *
3285860 --ACATGTCAAAAAATGAAAACGA-CAGGGATTAAAGTAGAAG
64 CCACAAGTCAAAAAATGAAAATGATCA-AAATTAAACCAAAAG
* * ** * ** * *
3285900 TCAAAAAATGTAAAA-CAACGAGAATTAAA-CTACAAGTCAAAAGGTGAAAATGACTGAGATTAA
1 TCAAAAAATG-AAAATGATCGA-AATTAAATC-ACAAGTCAAAAAATAAAAATGACCAAAATCAA
* * * **
3285963 ACCACATGTTAGAAAATGAAAATGATCAAAATTAAATGAAAAG
63 ACCACAAGTCAAAAAATGAAAATGATCAAAATTAAACCAAAAG
* ** *
3286006 TCAAAAAATGAAAATGATTGGCATTAAATCACGTA-TCAAAGAAATAAAAATGACCAAAATCAAA
1 TCAAAAAATGAAAATGATCGAAATTAAATCAC-AAGTCAAA-AAATAAAAATGACCAAAATCAAA
* * * **
3286070 TCACAAGTCAAAAAATGAAAATGATCGAGATTAAACCACTAG
64 CCACAAGTCAAAAAATGAAAATGATCAAAATTAAACCAAAAG
* *
3286112 TCAAAAAGTGAAAATGATCGAAATTAAATCACAAGTCAAAAAATAAAAATGGCCAAAAT
1 TCAAAAAATGAAAATGATCGAAATTAAATCACAAGTCAAAAAATAAAAATGACCAAAAT
3286171 TAAATCATGA
Statistics
Matches: 211, Mismatches: 46, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
102 13 0.06
103 32 0.15
104 4 0.02
105 36 0.17
106 124 0.59
107 2 0.01
ACGTcount: A:0.55, C:0.11, G:0.14, T:0.20
Consensus pattern (105 bp):
TCAAAAAATGAAAATGATCGAAATTAAATCACAAGTCAAAAAATAAAAATGACCAAAATCAAACC
ACAAGTCAAAAAATGAAAATGATCAAAATTAAACCAAAAG
Found at i:3286173 original size:141 final size:138
Alignment explanation
Indices: 3285926--3286264 Score: 333
Period size: 141 Copynumber: 2.4 Consensus size: 138
3285916 AACGAGAATT
* ** *
3285926 AAACTACAAGTCAAAAGGTGAAAATGA-CTGAGATTAAACCACATGTTAGAAAATGAAAATGATC
1 AAACCACAAGTCAAAAAATGAAAATGATC-GAGATTAAACCACA-GTCA-AAAATGAAAATGATC
* * *****
3285990 AAAATTAAATGAAAAGTCAAAAAATGAAAATGATTGGCATTAAATCACGTA-TCAAAGAAATAAA
63 AAAATTAAATCAAAAGTCAAAAAATAAAAATGACCAAAATTAAATCACG-AGTC-AAGAAATAAA
3286054 AATGACCAAAATC
126 AATGACCAAAATC
* *
3286067 AAATCACAAGTCAAAAAATGAAAATGATCGAGATTAAACCACTAGTCAAAAAGTGAAAATGATCG
1 AAACCACAAGTCAAAAAATGAAAATGATCGAGATTAAACCAC-AGTCAAAAA-TGAAAATGATCA
* * * ** * *
3286132 AAATTAAATCACAAGTCAAAAAATAAAAATGGCCAAAATTAAATCATGAGTCTGGAACTGAAAAT
64 AAATTAAATCAAAAGTCAAAAAATAAAAATGACCAAAATTAAATCACGAGTCAAGAAATAAAAAT
* * *
3286197 GACCTACATG
129 GACCAAAATC
* *
3286207 AAACCACTAGT-AAGAAAATAAAAAATGATCGAGATTAAACCACGAGTCAAAAAATGAA
1 AAACCACAAGTCAA-AAAAT-GAAAATGATCGAGATTAAACCAC-AGTC-AAAAATGAA
3286265 GACAACAGCG
Statistics
Matches: 164, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
139 2 0.01
140 35 0.21
141 120 0.73
142 7 0.04
ACGTcount: A:0.53, C:0.13, G:0.14, T:0.19
Consensus pattern (138 bp):
AAACCACAAGTCAAAAAATGAAAATGATCGAGATTAAACCACAGTCAAAAATGAAAATGATCAAA
ATTAAATCAAAAGTCAAAAAATAAAAATGACCAAAATTAAATCACGAGTCAAGAAATAAAAATGA
CCAAAATC
Found at i:3286933 original size:141 final size:142
Alignment explanation
Indices: 3286754--3287086 Score: 342
Period size: 141 Copynumber: 2.4 Consensus size: 142
3286744 ATTAAAGGAT
* * * * *
3286754 GAGTTAGAAAATGAAAATGATTGGGACTAAACCTTGAGTGAGAAAATGAAAACCA-ACA-GGATT
1 GAGTCAGAAAATGAAAATGACTGGGATTAAACCATGAGTCAGAAAATGAAAA-CAGACAGGGATT
* * * * * * *
3286817 AAACCACG-AGTTA-GAAAATGAAAGTGATATGGATTAAA-CAATGAGTCAGAAAATGTCAAACG
65 AAACAACGTA--TAGGAAAATGAAAATGACAGGGATTAAAGC-ATGAGTCAGAAAATATAAAACA
* * *
3286879 ATAGGGATTATACCAC
127 ACAAGGATTAAACCAC
* *
3286895 GAGTCAGAAAATGAAAATGACTGGGATTGAATCATGAGTCA-AAACAT--AAACATGACAGGGAT
1 GAGTCAGAAAATGAAAATGACTGGGATTAAACCATGAGTCAGAAA-ATGAAAACA-GACAGGGAT
*
3286957 TAAACAACGTATAGGAAAATGAAAATGACAGGGATTAAAGCATGAGTCAGAAAATATAAAATAAC
64 TAAACAACGTATAGGAAAATGAAAATGACAGGGATTAAAGCATGAGTCAGAAAATATAAAACAAC
3287022 AAGGATTAAACCAC
129 AAGGATTAAACCAC
* * * * *
3287036 AAGTCA-AAAGTGAAAATGACCGAGATTAAACCATGAGTTAGAAAATGAAAA
1 GAGTCAGAAAATGAAAATGACTGGGATTAAACCATGAGTCAGAAAATGAAAA
3287087 TGACCAGAAT
Statistics
Matches: 157, Mismatches: 25, Indels: 19
0.78 0.12 0.09
Matches are distributed among these distances:
138 2 0.01
139 3 0.02
140 38 0.24
141 109 0.69
142 5 0.03
ACGTcount: A:0.49, C:0.11, G:0.21, T:0.19
Consensus pattern (142 bp):
GAGTCAGAAAATGAAAATGACTGGGATTAAACCATGAGTCAGAAAATGAAAACAGACAGGGATTA
AACAACGTATAGGAAAATGAAAATGACAGGGATTAAAGCATGAGTCAGAAAATATAAAACAACAA
GGATTAAACCAC
Found at i:3287160 original size:176 final size:177
Alignment explanation
Indices: 3286972--3287363 Score: 470
Period size: 176 Copynumber: 2.2 Consensus size: 177
3286962 AACGTATAGG
* *
3286972 AAAATGAAAATGACAGGGATTAAAGCATGAGTCAGAAAATAT-AAAATAACAAGGATTAAACCAC
1 AAAATAAAAATGACAGGGATTAAAGCACGAGTCAGAAAATATGAAAATAACAAGGATTAAACCAC
* * * * * *
3287036 AAGTC-AAAAGTGAAAATGACCGAGATTAAACCATGAGTTAGAAAATGAAAATGACCAGAATTAA
66 AAGTCAAAAAATGAAAATGACCGAAATTAAACCATGAGTCAAAAAATAAAAATGACCAAAATTAA
* * *
3287100 ATGATGAGT-TAAAAAAAGAAAAAAATCGGCATTAAATCATGAGTCAA
131 ATCATGAGTGTAAAAAAA-AAAAAAATCGGCATTAAAACACGAGTCAA
* * * * * *
3287147 AGAAATAAAAATGACTGGAATCAAATCACGAGTCA-AAAA-ATGAAAATGACCAGGATTAAACCA
1 A-AAATAAAAATGACAGGGATTAAAGCACGAGTCAGAAAATATGAAAATAACAAGGATTAAACCA
** *
3287210 CTTGTCAAAAAATGAAAATGACCGAAATTAAATCATGAGTCAAAAAATAAAAATGACCAAAATTA
65 CAAGTCAAAAAATGAAAATGACCGAAATTAAACCATGAGTCAAAAAATAAAAATGACCAAAATTA
** ** *
3287275 AATCATGAGTGTAAAACTAAAAACGATCGGGATTAAAACACGAGTCAA
130 AATCATGAGTGTAAAAAAAAAAAAAATCGGCATTAAAACACGAGTCAA
* * *
3287323 AAAATTAAAAACGATAGGGATTAAAGCACGAGTTAGAAAAT
1 AAAA-TAAAAATGACAGGGATTAAAGCACGAGTCAGAAAAT
3287364 GAAAACAATC
Statistics
Matches: 178, Mismatches: 32, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
174 2 0.01
175 31 0.17
176 135 0.76
177 10 0.06
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (177 bp):
AAAATAAAAATGACAGGGATTAAAGCACGAGTCAGAAAATATGAAAATAACAAGGATTAAACCAC
AAGTCAAAAAATGAAAATGACCGAAATTAAACCATGAGTCAAAAAATAAAAATGACCAAAATTAA
ATCATGAGTGTAAAAAAAAAAAAAATCGGCATTAAAACACGAGTCAA
Found at i:3287282 original size:17 final size:17
Alignment explanation
Indices: 3287227--3287282 Score: 51
Period size: 16 Copynumber: 3.2 Consensus size: 17
3287217 AAAAATGAAA
*
3287227 ATGACCGAAATTAAATC
1 ATGACCAAAATTAAATC
* * *
3287244 ATGAGTCAAAAAATAAA-A
1 ATGA--CCAAAATTAAATC
3287262 ATGACCAAAATTAAATC
1 ATGACCAAAATTAAATC
3287279 ATGA
1 ATGA
3287283 GTGTAAAACT
Statistics
Matches: 29, Mismatches: 7, Indels: 6
0.69 0.17 0.14
Matches are distributed among these distances:
16 9 0.31
17 8 0.28
18 4 0.14
19 8 0.28
ACGTcount: A:0.55, C:0.12, G:0.11, T:0.21
Consensus pattern (17 bp):
ATGACCAAAATTAAATC
Found at i:3287363 original size:141 final size:141
Alignment explanation
Indices: 3287059--3287368 Score: 324
Period size: 141 Copynumber: 2.2 Consensus size: 141
3287049 AAATGACCGA
* * *
3287059 GATTAAACCATGAGTTAGAAAATGAAAATGACCAGAATTAAATGATGAGTTAAAAAAAGAAAAAA
1 GATTAAACCACGAGTTAGAAAATGAAAATGACCAGAATTAAATCATGAGTCAAAAAAAGAAAAAA
* *** * * *
3287124 ATCGGCATTAAATCATGAGTCAAAGAAATAAAAATGACTGGAATCAAATCACGAGTCAAAAAATG
66 ACCAAAATTAAATCATGAGTCAAAGAAATAAAAACGACTGGAATCAAAACACGAGTCAAAAAATA
*
3287189 AAAATGACCAG
131 AAAACGACCAG
** * *
3287200 GATTAAACCACTTGTCAAAAAATGAAAATGACC-GAAATTAAATCATGAGTCAAAAAATA-AAAA
1 GATTAAACCACGAGTTAGAAAATGAAAATGACCAG-AATTAAATCATGAGTCAAAAAA-AGAAAA
** ** * * *
3287263 TGACCAAAATTAAATCATGAGTGTAA-AACTAAAAACGA-TCGGGATTAAAACACGAGTCAAAAA
64 AAACCAAAATTAAATCATGAGTCAAAGAAATAAAAACGACT-GGAATCAAAACACGAGTCAAAAA
*
3287326 ATTAAAAACGA-TAGG
128 A-TAAAAACGACCA-G
*
3287341 GATTAAAGCACGAGTTAGAAAATGAAAA
1 GATTAAACCACGAGTTAGAAAATGAAAA
3287369 CAATCGAGAT
Statistics
Matches: 136, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
139 1 0.01
140 33 0.24
141 101 0.74
142 1 0.01
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.19
Consensus pattern (141 bp):
GATTAAACCACGAGTTAGAAAATGAAAATGACCAGAATTAAATCATGAGTCAAAAAAAGAAAAAA
ACCAAAATTAAATCATGAGTCAAAGAAATAAAAACGACTGGAATCAAAACACGAGTCAAAAAATA
AAAACGACCAG
Found at i:3287882 original size:107 final size:105
Alignment explanation
Indices: 3287576--3287883 Score: 257
Period size: 107 Copynumber: 2.9 Consensus size: 105
3287566 ATCATGAGTT
* * * * ** * *
3287576 AGAAATTAGAAATGA-CCAAGATTAAA-CATGAGTCAAAAAA-TAAAAATGACACAAATTAAATC
1 AGAAAATAAAAATGATCCAA-ATTAAACCATG-GTTAAAAAAGTGAAAATGACTGAGATAAAATC
* * * * ** *
3287638 ATGAGTTAAAAAATGAAAATGACCGAGATTAAACCATGGGTC
64 ACGAGTTAAAAAATGAAAAAGACTGAAATTAAACCATAAGCC
* * * * * * *
3287680 ATAAAATGAAAATGATCGAGATTAAACCTTGGTTAAAAAAGTGAAAATGATTGAGATTAAATCAC
1 AGAAAATAAAAATGATCCAAATTAAACCATGGTTAAAAAAGTGAAAATGACTGAGATAAAATCAC
* * * *
3287745 GAGTTAGAAAATGAAAAAAACTCAATATTAAATCATAAGCC
66 GAGTTAAAAAATGAAAAAGACTGAA-ATTAAACCATAAGCC
* *
3287786 AGAGAAATAAAAATGATCCAAATTAAATCATGAGTTAGAAAA-TGAAAATGACTGAGATCAAAAT
1 AGA-AAATAAAAATGATCCAAATTAAACCATG-GTTAAAAAAGTGAAAATGACTGAGAT-AAAAT
*
3287850 -ACGAGTTAAAAAAATGAAAACGACTGAAATTAAA
63 CACGAGTT-AAAAAATGAAAAAGACTGAAATTAAA
3287884 GTACAATTTA
Statistics
Matches: 159, Mismatches: 37, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
104 25 0.16
105 42 0.26
106 13 0.08
107 51 0.32
108 28 0.18
ACGTcount: A:0.53, C:0.10, G:0.15, T:0.22
Consensus pattern (105 bp):
AGAAAATAAAAATGATCCAAATTAAACCATGGTTAAAAAAGTGAAAATGACTGAGATAAAATCAC
GAGTTAAAAAATGAAAAAGACTGAAATTAAACCATAAGCC
Found at i:3288770 original size:136 final size:137
Alignment explanation
Indices: 3288556--3288812 Score: 306
Period size: 136 Copynumber: 1.9 Consensus size: 137
3288546 TAAACTATGA
* * * * * *
3288556 GTCAGAAAATGAAAATGACTAGGATTAAATCACGAGTTAGAAAATACAAACGACTAAGATTAAAC
1 GTCAAAAAATAAAAATGACTAGGATTAAACCACGAGTTAAAAAATACAAACAACTAAGAATAAAC
* * *
3288621 CACGAGTCAGAAAATAAAAATGACTAGG-ATTAACTCACAAGTTAGA-AAATGAAAACAACCAGG
66 CACGAGTCAGAAAATAAAAACGA-TAGGTATTAAATCACAAGTTAGAGAAATAAAAACAACCAGG
3288684 ACTAAACC
130 ACTAAACC
* * *
3288692 GTCAAAAAATAAAAATGACT-GAGATTAAACCATGGGTTAAAAAATGA-AAACAACTGAGAATAA
1 GTCAAAAAATAAAAATGACTAG-GATTAAACCACGAGTTAAAAAAT-ACAAACAACTAAGAATAA
* * * * *
3288755 ATCATGAGTTAGAAAATGAAAACGATCGGTATTAAATCACAAGTTAGAGAAATAAAAA
64 ACCACGAGTCAGAAAATAAAAACGATAGGTATTAAATCACAAGTTAGAGAAATAAAAA
3288813 TGATCGAAAT
Statistics
Matches: 100, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
135 4 0.04
136 87 0.87
137 9 0.09
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.19
Consensus pattern (137 bp):
GTCAAAAAATAAAAATGACTAGGATTAAACCACGAGTTAAAAAATACAAACAACTAAGAATAAAC
CACGAGTCAGAAAATAAAAACGATAGGTATTAAATCACAAGTTAGAGAAATAAAAACAACCAGGA
CTAAACC
Found at i:3289503 original size:104 final size:103
Alignment explanation
Indices: 3289358--3289556 Score: 233
Period size: 104 Copynumber: 1.9 Consensus size: 103
3289348 AATGATTGGC
**** * *
3289358 ATTAAATCATGAGTCAAAGAAAAAAATGATTGGAATCAAATCACGAGTCAAAAAATAAAATTGA-
1 ATTAAATCATGAGTCAAAGAAAAAAATGACCAAAATCAAATCACAAGTCAAAAAATAAAAATGAC
*
3289422 CTGAGATTAAACCACT-ACTTACAAAATTAAACGATTAGA
66 CAG-GATTAAACCA-TGACTTACAAAATTAAACGATTAGA
* * *
3289461 ATTAAATCATGAGTCAAA-AAATCAAAATGACCAAAATTAAATCACAAGTCTAAAACTAAAAATG
1 ATTAAATCATGAGTCAAAGAAA--AAAATGACCAAAATCAAATCACAAGTCAAAAAATAAAAATG
* *
3289525 ACCAGGATTAAACCATGAGTTAGAAAATTAAA
64 ACCAGGATTAAACCATGACTTACAAAATTAAA
3289557 ATGACAAGGA
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
102 3 0.04
103 19 0.24
104 56 0.70
105 2 0.03
ACGTcount: A:0.53, C:0.13, G:0.12, T:0.23
Consensus pattern (103 bp):
ATTAAATCATGAGTCAAAGAAAAAAATGACCAAAATCAAATCACAAGTCAAAAAATAAAAATGAC
CAGGATTAAACCATGACTTACAAAATTAAACGATTAGA
Found at i:3290751 original size:176 final size:177
Alignment explanation
Indices: 3290431--3290755 Score: 381
Period size: 176 Copynumber: 1.8 Consensus size: 177
3290421 ATTAGAGCAT
* * * *** *
3290431 GAGTCAGAAAATGTAAAACAATGGGTATTAAACCACAAGTCAAAAAGTGAAAATGGTTGAGATTA
1 GAGTCAGAAAATGAAAAACAACGGGTATTAAACCACAAGCCAAAAAACAAAAATGATTGAGATTA
** * * * * *
3290496 AATCGTGAGTCAGAAAATGAAAACAACCAAAATTAAATGATGAGCTAAAAAATAAAAATGACTTG
66 AATAATGAGTCAGAAAATAAAAACAACCAAAATTAAATCACGAGCTAAAAAATAAAAACGACTCG
*
3290561 CACTAAATCATGAGTCAAAGAAACAAAAATGATCGAAATCAAATCAC
131 CACTAAACCATGAGTCAAAGAAACAAAAATGATCGAAATCAAATCAC
*
3290608 GAGTCAGAAAAT-AAAAATGAACGGG-ATTAAACCACAAGCCAAAAAACAAAAATGATT-AGAAT
1 GAGTCAGAAAATGAAAAA-CAACGGGTATTAAACCACAAGCCAAAAAACAAAAATGATTGAG-AT
** * *
3290670 TAAATAATGAGTCAGAAAATAAAAATGACCAAAATTAAATCACGAGTCT-AAAATTGAAAACGA-
64 TAAATAATGAGTCAGAAAATAAAAACAACCAAAATTAAATCACGAG-CTAAAAAATAAAAACGAC
* *
3290733 TCGAGATTAAACCATGAGTCAAA
128 TCG-CACTAAACCATGAGTCAAA
3290756 AAATGAAGAC
Statistics
Matches: 122, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
175 4 0.03
176 99 0.81
177 19 0.16
ACGTcount: A:0.53, C:0.13, G:0.16, T:0.19
Consensus pattern (177 bp):
GAGTCAGAAAATGAAAAACAACGGGTATTAAACCACAAGCCAAAAAACAAAAATGATTGAGATTA
AATAATGAGTCAGAAAATAAAAACAACCAAAATTAAATCACGAGCTAAAAAATAAAAACGACTCG
CACTAAACCATGAGTCAAAGAAACAAAAATGATCGAAATCAAATCAC
Found at i:3291478 original size:243 final size:243
Alignment explanation
Indices: 3291190--3291775 Score: 548
Period size: 243 Copynumber: 2.4 Consensus size: 243
3291180 TGAAAATGAT
** * *
3291190 AATGAAAATTATCGAAATTAAATTACGAGTCAAAAAATGAAAATGA-TCAGGATTAAAAGGCAA-
1 AATGAAAACGATCGAAATTAAATCACGAGTCAAAAAATAAAAATGACT-AGGATT-AAA--CAAT
* ** *
3291253 G-TTAAAAAATGAAAATGACTA-GAATTAAAGCATGAGTTAGAAAACG-AAAATGACTGGGACTA
62 GCTTAAAAAATGAAAATGA-TAGGAATTAAA-CACGAGTTAGAAAACGTAAAACAACAGGGACTA
** * * *
3291315 AACCTTAAG-CGAGAAAA-TGAAAACCACCAGGATTAAACCATGAGTCAAAAAATGAAAACGATC
125 AACCACAAGTC-A-AAAAGTGAAAACCACCAAGATTAAACCACGAGTCAAAAAATGAAAACGACC
*** *
3291378 GGGATTAAACGATGAGTC-AGAAATGAAAAACAACCAGGATTATACCACGAGTCAA
188 AAAATTAAACGATGAGTCAAAAAATGAAAAACAACCAGGATTATACCACGAGTCAA
*
3291433 AATGAAAACGATCGAAATTAAATCACGAGTCAAAAAATAAAAATGACTGGGATTAAACAATGCCT
1 AATGAAAACGATCGAAATTAAATCACGAGTCAAAAAATAAAAATGACTAGGATTAAACAATG-CT
** * * *
3291498 TTGAAAATGAAAATGATAGGGATTAAACACGAGTTAGAAAATGTAAAACAACAGGGATTAAACCA
65 TAAAAAATGAAAATGATAGGAATTAAACACGAGTTAGAAAACGTAAAACAACAGGGACTAAACCA
** * *
3291563 CAAGTCAAAAAGTGAAAATGACCAAGATTAAACCACGAGTCAGAAAATGAAAATGACCAAAATTA
130 CAAGTCAAAAAGTGAAAACCACCAAGATTAAACCACGAGTCAAAAAATGAAAACGACCAAAATTA
** * * * * * *
3291628 AACGATGAGTCAAAAAATGAAAATGATCGA-CATTAAATCATGAGTCAA
195 AACGATGAGTCAAAAAATGAAAAACAACCAGGATTATACCACGAGTCAA
* * * * * * * * *
3291676 ACA--AAAAAGATTG-AATCCAAATCACAAGTCAAAAAAATGAGAGTGACTGGGATTAAACCACT
1 A-ATGAAAACGATCGAAAT-TAAATCACGAGTC-AAAAAATAAAAATGACTAGGATTAAA-CAAT
* *
3291738 GGTCAAAAAATGAAAATGATAGGAATTAAATCACGAGT
62 GCTTAAAAAATGAAAATGATAGGAATTAAA-CACGAGT
3291776 CAAAAAATAA
Statistics
Matches: 281, Mismatches: 48, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
240 3 0.01
241 4 0.01
242 42 0.15
243 205 0.73
244 27 0.10
ACGTcount: A:0.51, C:0.13, G:0.18, T:0.19
Consensus pattern (243 bp):
AATGAAAACGATCGAAATTAAATCACGAGTCAAAAAATAAAAATGACTAGGATTAAACAATGCTT
AAAAAATGAAAATGATAGGAATTAAACACGAGTTAGAAAACGTAAAACAACAGGGACTAAACCAC
AAGTCAAAAAGTGAAAACCACCAAGATTAAACCACGAGTCAAAAAATGAAAACGACCAAAATTAA
ACGATGAGTCAAAAAATGAAAAACAACCAGGATTATACCACGAGTCAA
Found at i:3291506 original size:138 final size:140
Alignment explanation
Indices: 3291363--3291619 Score: 344
Period size: 138 Copynumber: 1.9 Consensus size: 140
3291353 CATGAGTCAA
* * *
3291363 AAAATGAAAACGATCGGGATTAAACGATGAGTCAG-AAATGAAAAACAACCA-GGATTATACCAC
1 AAAATGAAAACGATAGGGATTAAAC-ACGAGTCAGAAAATGAAAAACAA-CAGGGATTAAACCAC
* * *
3291426 GAGTC-AAAA-TGAAAACGATCGAA-ATTAAATCACGAGTCAAAAAATAAAAATGACTGGGATTA
64 AAGTCAAAAAGTGAAAACGA-CCAAGATTAAACCACGAGTCAAAAAATAAAAATGACTGGGATTA
3291488 AACAATGCCTTTG
128 AACAATGCCTTTG
* * *
3291501 AAAATGAAAATGATAGGGATTAAACACGAGTTAGAAAATGTAAAACAACAGGGATTAAACCACAA
1 AAAATGAAAACGATAGGGATTAAACACGAGTCAGAAAATGAAAAACAACAGGGATTAAACCACAA
* * *
3291566 GTCAAAAAGTGAAAATGACCAAGATTAAACCACGAGTCAGAAAATGAAAATGAC
66 GTCAAAAAGTGAAAACGACCAAGATTAAACCACGAGTCAAAAAATAAAAATGAC
3291620 CAAAATTAAA
Statistics
Matches: 102, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
137 9 0.09
138 50 0.49
139 7 0.07
140 36 0.35
ACGTcount: A:0.51, C:0.14, G:0.18, T:0.18
Consensus pattern (140 bp):
AAAATGAAAACGATAGGGATTAAACACGAGTCAGAAAATGAAAAACAACAGGGATTAAACCACAA
GTCAAAAAGTGAAAACGACCAAGATTAAACCACGAGTCAAAAAATAAAAATGACTGGGATTAAAC
AATGCCTTTG
Found at i:3292725 original size:18 final size:17
Alignment explanation
Indices: 3292683--3292717 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
3292673 ATTAAATCAC
3292683 AAGTCAAAGAAATAAAA
1 AAGTCAAAGAAATAAAA
3292700 AAGTCAAAGAAATAAAA
1 AAGTCAAAGAAATAAAA
3292717 A
1 A
3292718 TGATCAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.71, C:0.06, G:0.11, T:0.11
Consensus pattern (17 bp):
AAGTCAAAGAAATAAAA
Found at i:3293057 original size:71 final size:70
Alignment explanation
Indices: 3292946--3293077 Score: 167
Period size: 71 Copynumber: 1.9 Consensus size: 70
3292936 AAAACCACTA
* * * * * *
3292946 GGATTAAACCTCGAGTTAGAAAATAAAAGTGATCGGGATTAAATGATGAGTCAAAAAATAAAAAA
1 GGATTAAACCACGAGTCAAAAAATAAAAGTGACCGAGATT-AATCATGAGTCAAAAAATAAAAAA
3293011 CGACCG
65 CGACCG
* *
3293017 GGATTATACCACGAGTCAAAAAATGAAAA-TGACCGAGATTAATCATTAGTCAAAAAATAAA
1 GGATTAAACCACGAGTCAAAAAAT-AAAAGTGACCGAGATTAATCATGAGTCAAAAAATAAA
3293078 CATGATAAGG
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
70 19 0.37
71 29 0.56
72 4 0.08
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.20
Consensus pattern (70 bp):
GGATTAAACCACGAGTCAAAAAATAAAAGTGACCGAGATTAATCATGAGTCAAAAAATAAAAAAC
GACCG
Found at i:3293325 original size:106 final size:105
Alignment explanation
Indices: 3293126--3293404 Score: 254
Period size: 106 Copynumber: 2.6 Consensus size: 105
3293116 GATAAGGATT
* * * * ** * **
3293126 AAAGCACGAGTCAGAAAATGAAAATGACCAGAATTAAATGATGAGTCAAAAAATGTAAAA-GATT
1 AAAGCACAAGTCAAAAAATGAAAATGACAAGGATTAAACCACGAGTCAAAAAATG-AAAATGACC
* * * * * * * ** *
3293190 GACATTAAATAATGAGTCAAAGAAATAAAATTGGTCGAAATC
65 AAAATTGAATCACGAGTCTAA-AACTAAAAACGATCGAAATC
* *
3293232 AAATCACAAGTCAAAAAATGAAAATGACAAGGATTAAACCACTAGTCAAAAAAATGAAAATGACC
1 AAAGCACAAGTCAAAAAATGAAAATGACAAGGATTAAACCACGAGTC-AAAAAATGAAAATGACC
** *
3293297 AAAATTGAATCACGAGTCTAAAACTAAAAACGATCGGGATT
65 AAAATTGAATCACGAGTCTAAAACTAAAAACGATCGAAATC
* * * * * *
3293338 AAAGCACAAGTCAAAAAATTAAAATGATAGGGATTAAACCACGAGTCAGAAACTGAAAATGATCA
1 AAAGCACAAGTCAAAAAATGAAAATGACAAGGATTAAACCACGAGTCAAAAAATGAAAATGACCA
3293403 AA
66 AA
3293405 TGAAACCATC
Statistics
Matches: 139, Mismatches: 32, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
105 17 0.12
106 97 0.70
107 25 0.18
ACGTcount: A:0.53, C:0.13, G:0.16, T:0.19
Consensus pattern (105 bp):
AAAGCACAAGTCAAAAAATGAAAATGACAAGGATTAAACCACGAGTCAAAAAATGAAAATGACCA
AAATTGAATCACGAGTCTAAAACTAAAAACGATCGAAATC
Found at i:3293636 original size:211 final size:210
Alignment explanation
Indices: 3293240--3293701 Score: 504
Period size: 211 Copynumber: 2.2 Consensus size: 210
3293230 TCAAATCACA
** *
3293240 AGTCAAAAAATGAAAATGA-CAAGGATTAAACCACT-AGTCAAAAAAATGAAAATGACCAAAATT
1 AGTCAAAAAATGAAAACAATCAA-GATTAAACCA-TGAGTCAAAAAAATAAAAATGACCAAAATT
* * * * *
3293303 GAATCACGAGTCTAAAACTAAAAACGATCGGGATTAAAGCACAAGTCAAAAAATTAAAATGATAG
64 AAATCACGAGTCAAAAAATAAAAACGATCGGGATTAAACCACAAGTCAAAAAATGAAAATGATAG
* * * ** *
3293368 GGATTAAACCACGAGTCAGAAACTGAAAATGATCAAATGAAACCATCGGTCAAAAAATGAAAAAC
129 GGATTAAACCACGAGTCAGAAACTAAAAACGACCAAATGAAACCATAAGTAAAAAAAT-AAAAAC
** **
3293433 GATTAGGGTTAAA-CTATG
193 GACCAGAATTAAATC-ATG
* ** * * *
3293451 AGTCAAAAAATGAAGACAATGGAGATTAAACCATGAGTCAGAGAAATAAAAATGACCAGAATTAA
1 AGTCAAAAAATGAAAACAATCAAGATTAAACCATGAGTCAAAAAAATAAAAATGACCAAAATTAA
* * * *
3293516 ATCATGAGTCAAAAAATGAAAAA-GAT-GGGAATTAAACCACGAGTCTAAAAATGAAAATGATCG
66 ATCACGAGTCAAAAAAT-AAAAACGATCGGG-ATTAAACCACAAGTCAAAAAATGAAAATGATAG
* * * *
3293579 GGATTAAATCACGAGTCAGAAATTAAAAACGACCAAGATTAAA-CATAAGTAAAAAAATAAAAAT
129 GGATTAAACCACGAGTCAGAAACTAAAAACGACCAA-ATGAAACCATAAGTAAAAAAATAAAAAC
*
3293643 GACCCGAATTAAATCATG
193 GACCAGAATTAAATCATG
* *
3293661 AGTCAAAAAATGAAAACGATCAAGATTAAACCATGGGTCAA
1 AGTCAAAAAATGAAAACAATCAAGATTAAACCATGAGTCAA
3293702 CGACCGAGAT
Statistics
Matches: 206, Mismatches: 39, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
210 55 0.27
211 140 0.68
212 11 0.05
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.18
Consensus pattern (210 bp):
AGTCAAAAAATGAAAACAATCAAGATTAAACCATGAGTCAAAAAAATAAAAATGACCAAAATTAA
ATCACGAGTCAAAAAATAAAAACGATCGGGATTAAACCACAAGTCAAAAAATGAAAATGATAGGG
ATTAAACCACGAGTCAGAAACTAAAAACGACCAAATGAAACCATAAGTAAAAAAATAAAAACGAC
CAGAATTAAATCATG
Found at i:3293703 original size:25 final size:25
Alignment explanation
Indices: 3293675--3293723 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
3293665 AAAAAATGAA
*
3293675 AACGATCAAGATTAAACCATGGGTC
1 AACGACCAAGATTAAACCATGGGTC
* *
3293700 AACGACCGAGATTAAACCTTGGGT
1 AACGACCAAGATTAAACCATGGGT
3293724 AAGAAAATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (25 bp):
AACGACCAAGATTAAACCATGGGTC
Found at i:3293866 original size:71 final size:70
Alignment explanation
Indices: 3293728--3293881 Score: 182
Period size: 71 Copynumber: 2.2 Consensus size: 70
3293718 TTGGGTAAGA
* * * * * *
3293728 AAATGAAAATGATCGAGATTAAATCATGAGTTAAAAAATGAAAACAATCGATATTAAATAATAAG
1 AAATGAAAATGATCCAAATTAAATCATGAGTTAAAAAATGAAAACAATCAAGATTAAACAACAAG
3293793 TCAAGG
66 TC-AGG
* * *** * *
3293799 AAATAAAAATGATCCAAATTAAATCATGAGTTAGAAAATGAAAGTGATCAAGATTAAACCACGAG
1 AAATGAAAATGATCCAAATTAAATCATGAGTTAAAAAATGAAAACAATCAAGATTAAACAACAAG
3293864 TCAGG
66 TCAGG
3293869 AAATGAAAATGAT
1 AAATGAAAATGAT
3293882 AATGAAAATT
Statistics
Matches: 69, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
70 15 0.22
71 54 0.78
ACGTcount: A:0.53, C:0.08, G:0.16, T:0.23
Consensus pattern (70 bp):
AAATGAAAATGATCCAAATTAAATCATGAGTTAAAAAATGAAAACAATCAAGATTAAACAACAAG
TCAGG
Found at i:3294669 original size:106 final size:103
Alignment explanation
Indices: 3294286--3294799 Score: 337
Period size: 106 Copynumber: 4.9 Consensus size: 103
3294276 ATTGAGATTG
* ** * * *
3294286 AACCATGAGTCAAAAAATGAAAATGATCAGAATTAAATGACGAGTCAAAAAATGAAAATGGC-TA
1 AACCATGAGTCAAAAAATGAAAATGATCAGGATTAAACCATGAGTCAGAAAATGAAAA--ACAT-
* * * ** * *
3294350 GCATTAAATCATGAGTCATGAAAA-AAAAATGACCAGAATCA
63 GGATTAAACCACGAGTCA-GAAAATAAAAACAACCATAATGA
* ** * *
3294391 AATCACAAGTCAAAAAAAGAAAATGA-CAGGGATTAAACCACT-AGTCAAAAAATGAAAATGAC-
1 AACCATGAGTCAAAAAATGAAAATGATCA-GGATTAAACCA-TGAGTCAGAAAATGAAAA--ACA
* * * * ** * *
3294453 TAGAATTAAATCACAAGTCA-AGAATAAAAATTACCAAAATTA
62 T-GGATTAAACCACGAGTCAGAAAATAAAAACAACCATAATGA
** * * * * * **
3294495 AATAATGAGTCTAAAACTTAAAATGACCAGGATTAAACCATGAGTCAGAAAATTAAAATGATGGG
1 AACCATGAGTCAAAAAATGAAAATGATCAGGATTAAACCATGAGTCAGAAAATGAAAAACAT--G
* * * *
3294560 GATTAAACCACGAGTTAGAAAATGAAAACAATCGA-GATGA
64 GATTAAACCACGAGTCAGAAAATAAAAACAA-CCATAATGA
*
3294600 AACCACT-AGTCAAAAAATGAAAAATGATCAGGATTAAATCATGAGTCAGAAAATGAAGACAACA
1 AACCA-TGAGTCAAAAAATG-AAAATGATCAGGATTAAACCATGAGTCAGAAAATGAA-A-AACA
* * *
3294664 TGGATTAAACCATGAGTCAGAGAAATAAAAACGACCATAATTA
62 TGGATTAAACCACGAGTCAGA-AAATAAAAACAACCATAATGA
* * * *
3294707 AATCATGAGTCAGAAAATGAAAAGGAT-GGGAATTAAACCATGAGTCAGAAAATGAAAAAGATCA
1 AACCATGAGTCAAAAAATGAAAATGATCAGG-ATTAAACCATGAGTCAGAAAATG-AAAA-A-CA
*
3294771 T-GATTAAATCACGAGTCAGAAAATAAAAA
62 TGGATTAAACCACGAGTCAGAAAATAAAAA
3294800 TGACCAAGAT
Statistics
Matches: 326, Mismatches: 63, Indels: 40
0.76 0.15 0.09
Matches are distributed among these distances:
103 5 0.02
104 74 0.23
105 104 0.32
106 106 0.33
107 34 0.10
108 3 0.01
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.19
Consensus pattern (103 bp):
AACCATGAGTCAAAAAATGAAAATGATCAGGATTAAACCATGAGTCAGAAAATGAAAAACATGGA
TTAAACCACGAGTCAGAAAATAAAAACAACCATAATGA
Found at i:3296098 original size:105 final size:105
Alignment explanation
Indices: 3295601--3296933 Score: 342
Period size: 106 Copynumber: 12.6 Consensus size: 105
3295591 ATCACAAGTC
* * * * * * *
3295601 AAAAAATTAAAATGACCGGGATTAAACCACT-AGTCACAAAATAAAAATGATCGAAATTAAATCA
1 AAAAAATAAAAAAGACCGAGATTAAATCA-TGAGTCAAAAAATGAAAATGATCGAGATTAAATCA
* * * * * * *
3295665 TGAGTCAGAAAATAAAAATAACTAAAATTAAATCACGAGTC
65 TGAGTCAAAAAATAAAAATGACCAAGATTAAACCATGAGTA
* * * * * * * * * * * *
3295706 TAAAACTAAAAATGATCGGGATTAAAGCATG-GTTAGAAAATTAAAATGA-CTAGGATTATACCA
1 AAAAAATAAAAAAGACCGAGATTAAATCATGAGTCAAAAAATGAAAATGATCGA-GATTAAATCA
* * * ** * * *
3295769 TGAGTTAGAAAATGAAAATGATGAAGATGAAACCATTAGTC
65 TGAGTCAAAAAATAAAAATGACCAAGATTAAACCATGAGTA
* * * * * * *
3295810 AGAAAATGAAAAACA-ATCGAGATTAAACCACT-AGTCAGAAAAT-AAAGA-CAACAGGGATTAA
1 AAAAAAT-AAAAA-AGACCGAGATTAAATCA-TGAGTCAAAAAATGAAA-ATGATC-GAGATTAA
* * * * * ** *
3295871 ACCACGAGTGAAAAAAATAAAAATGA-CTAGAATTAAATCACAAGTC
61 ATCATGAGT-CAAAAAATAAAAATGACCAAG-ATTAAACCATGAGTA
* * * * * * * *
3295917 AGAAAATGAAAAGGA-TGGGAGTTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAATCA
1 AAAAAATAAAAAAGACCGAGA-TTAAATCATGAGTCAAAAAATGAAAATGATCGAGATTAAATCA
* * * *
3295981 TGAGTTAGAAAATAAAAGTGACCAAGATTAAACCATGAGTC
65 TGAGTCAAAAAATAAAAATGACCAAGATTAAACCATGAGTA
* * *
3296022 AAAAAATAAAAAAGACTTG-GATTAAATCACGAGTCAAAAAATGAAAATGATCGAGAATAAATCA
1 AAAAAATAAAAAAGAC-CGAGATTAAATCATGAGTCAAAAAATGAAAATGATCGAGATTAAATCA
* * *** * * * *
3296086 TGGGTCAAAAAATGAAACCAACTAGGATTAAACCATGGGTT
65 TGAGTCAAAAAATAAAAATGACCAAGATTAAACCATGAGTA
* * ** * ** * *
3296127 AGAAAATGAAAACTACCGAGATTAAATCATGTGTCAAAAAATGAAAACAATCGATATTAAATCAC
1 AAAAAATAAAAAAGACCGAGATTAAATCATGAGTCAAAAAATGAAAATGATCGAGATTAAATCAT
* * * *
3296192 AAGTCAAAGAAATAAAAATGATCAAAATTAAATCATGAGTA
66 GAGTCAAA-AAATAAAAATGACCAAGATTAAACCATGAGTA
* ** * * ** ** *
3296233 AAAAAATGAAACTGATCGAGATTAAACCACAAGTCAGGAAATGAAAACAATAATGGAAATTACCA
1 AAAAAATAAAAAAGACCGAGATTAAATCATGAGTC---AAA--AAATGAA-AAT-G--A-T--CG
* * ** **** * ** *
3296298 AAATTAAATTATGAGTCAAAAAATGGAAATGATGGGGATGAAAATACGAGTTA
54 AGATTAAATCATGAGTCAAAAAATAAAAATGACCAAGATTAAACCATGAG-TA
* * * * * * * * * ** * *
3296351 AAAAAATGAAAATGA-CTAGAATTAAAGCATGAGTTAGAAAATGAAAACGATTGCGACCAAACCT
1 AAAAAATAAAAAAGACCGAG-ATTAAATCATGAGTCAAAAAATGAAAATGATCGAGATTAAATCA
* * * ** *
3296415 TGAGTGAGAAAATGAAAACCACCAAGATTAAACCATGAGTT
65 TGAGTCAAAAAATAAAAATGACCAAGATTAAACCATGAGTA
* * * ** * * * * ** * * * *
3296456 AGAAAGTGAAAGTGATCGAGAATAAA-CGACGAGTCAGAAAATGAAAAACAATTGAGAATATACC
1 AAAAAATAAAAAAGACCGAGATTAAATC-ATGAGTCAAAAAATG-AAAATGATCGAGATTAAATC
* * * * *
3296520 ATGAGTCAAAAAATGAAAACGATCAGGATTAAATCATGAGT-
64 ATGAGTCAAAAAATAAAAATGACCAAGATTAAACCATGAGTA
* * * * * * *
3296561 --AAAA-AAAAATGACAG-GAATTAAA-CAATGTGTCAAAAAATGAAAA-CAACAAAGATTAAAA
1 AAAAAATAAAAAAGACCGAG-ATTAAATC-ATGAGTCAAAAAATGAAAATGATC-GAGATTAAAT
* * * * * *
3296620 CATGAGTCAGAAAATGTAAAA-CAACAGGGATTAAACCATAAGCT-
63 CATGAGTCAAAAAAT-AAAAATGACCA-AGATTAAACCATGAG-TA
* * * * * * * * * * * *
3296664 AAAAAGTGAAAATGACTGAGATTAAACCACGAGTTAGAAAATGAAAAAGACCGAAATTAAATGAT
1 AAAAAATAAAAAAGACCGAGATTAAATCATGAGTCAAAAAATGAAAATGATCGAGATTAAATCAT
* * ** * *
3296729 GAGTCAAAAAATGAAAATG-GCTGGTATTAAATCACGAGTCA
66 GAGTCAAAAAATAAAAATGACCAAG-ATTAAACCATGAGT-A
* * * * * * * * *
3296770 AAGAAATAAAAATGACTGAAATCAAATCATGAGTCGAAAAATAAAAATGA-CTGGGATTAAACCA
1 AAAAAATAAAAAAGACCGAGATTAAATCATGAGTCAAAAAATGAAAATGATC-GAGATTAAATCA
* * * * * *
3296834 CT-AGCCAAAAAA-CAAAATGATCAAAATT-AATCATGAGTC
65 -TGAGTCAAAAAATAAAAATGACCAAGATTAAACCATGAGTA
* * * * * * *
3296873 AAAAAATAAAAATGATCGAAATTAAATCATGAGTCTAAAATTGAAAATGATTGGGATTAAA
1 AAAAAATAAAAAAGACCGAGATTAAATCATGAGTCAAAAAATGAAAATGATCGAGATTAAA
3296934 CCACAAGTCA
Statistics
Matches: 910, Mismatches: 261, Indels: 116
0.71 0.20 0.09
Matches are distributed among these distances:
100 1 0.00
101 28 0.03
102 42 0.05
103 58 0.06
104 72 0.08
105 271 0.30
106 304 0.33
107 43 0.05
108 1 0.00
109 4 0.00
111 6 0.01
112 4 0.00
113 5 0.01
115 3 0.00
116 1 0.00
117 23 0.03
118 44 0.05
ACGTcount: A:0.52, C:0.11, G:0.17, T:0.20
Consensus pattern (105 bp):
AAAAAATAAAAAAGACCGAGATTAAATCATGAGTCAAAAAATGAAAATGATCGAGATTAAATCAT
GAGTCAAAAAATAAAAATGACCAAGATTAAACCATGAGTA
Found at i:3296739 original size:71 final size:70
Alignment explanation
Indices: 3296664--3296887 Score: 224
Period size: 71 Copynumber: 3.2 Consensus size: 70
3296654 ACCATAAGCT
* * * * *
3296664 AAAAAGTGAAAATGACTGAGATTAAACCACGAGTTAGA-AAATGAAAAA-GACCGAAATTAAATG
1 AAAAAATGAAAATGACTG-GATTAAACCACGAGTCAAAGAAAT-AAAAATGACCGAAATCAAATC
3296727 ATGAGTC
64 ATGAGTC
* * *
3296734 AAAAAATGAAAATGGCTGGTATTAAATCACGAGTCAAAGAAATAAAAATGACTGAAATCAAATCA
1 AAAAAATGAAAATGACTGG-ATTAAACCACGAGTCAAAGAAATAAAAATGACCGAAATCAAATCA
3296799 TGAGTC
65 TGAGTC
* * * * * * * *
3296805 GAAAAATAAAAATGACTGGGATTAAACCACTAGCCAAA-AAA-CAAAATGATCAAAAT-TAATCA
1 AAAAAATGAAAATGACT-GGATTAAACCACGAGTCAAAGAAATAAAAATGACCGAAATCAAATCA
3296867 TGAGTC
65 TGAGTC
*
3296873 AAAAAATAAAAATGA
1 AAAAAATGAAAATGA
3296888 TCGAAATTAA
Statistics
Matches: 130, Mismatches: 20, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
68 25 0.19
69 12 0.09
70 39 0.30
71 52 0.40
72 2 0.02
ACGTcount: A:0.54, C:0.11, G:0.16, T:0.19
Consensus pattern (70 bp):
AAAAAATGAAAATGACTGGATTAAACCACGAGTCAAAGAAATAAAAATGACCGAAATCAAATCAT
GAGTC
Found at i:3296900 original size:103 final size:104
Alignment explanation
Indices: 3296758--3296946 Score: 283
Period size: 103 Copynumber: 1.8 Consensus size: 104
3296748 GCTGGTATTA
3296758 AATCACGAGTCAAAGAAATAAAAATGACTGAAATCAAATCATGAGTCGAAAAATAAAAATGACTG
1 AATCACGAGTCAAAGAAATAAAAATGACTGAAATCAAATCATGAGTCGAAAAATAAAAATGACTG
*
3296823 GGATTAAACCACTAGCCAAAAAACAAAATGATCAAAATT
66 GGATTAAACCACAAGCCAAAAAACAAAATGATCAAAATT
* * * * * *
3296862 AATCATGAGTCAAA-AAATAAAAATGA-TCGAAATTAAATCATGAGTCTAAAATTGAAAATGATT
1 AATCACGAGTCAAAGAAATAAAAATGACT-GAAATCAAATCATGAGTCGAAAAATAAAAATGACT
*
3296925 GGGATTAAACCACAAGTCAAAA
65 GGGATTAAACCACAAGCCAAAA
3296947 TTAAAACAGC
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
102 1 0.01
103 62 0.82
104 13 0.17
ACGTcount: A:0.53, C:0.13, G:0.14, T:0.21
Consensus pattern (104 bp):
AATCACGAGTCAAAGAAATAAAAATGACTGAAATCAAATCATGAGTCGAAAAATAAAAATGACTG
GGATTAAACCACAAGCCAAAAAACAAAATGATCAAAATT
Done.