Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 28 of 93
Found at i:3297535 original size:69 final size:70
Alignment explanation
Indices: 3297452--3297968 Score: 210
Period size: 71 Copynumber: 7.4 Consensus size: 70
3297442 TTTGACTAGA
* * * *
3297452 ATTAAAGCATGAGTCAGAAAATGAAAACGACTGGACTAAAC-CCTAAGTGAGAAAATG-AAAACC
1 ATTAAACCATGAGTCAGAAAATGAAAACGACAGGACTAAACAACT-AGTCAGAAAATGAAAAACC
3297515 ACCAGG
65 ACCAGG
* **
3297521 ATTAAACCATGAGTCAGAAAATGAAAGCGATCAGGACTAAACAACTAGTCAGAAAATGAAAAATG
1 ATTAAACCATGAGTCAGAAAATGAAAACGA-CAGGACTAAACAACTAGTCAGAAAATGAAAAACC
*
3297586 ACTAGG
65 ACCAGG
** * * * * * * * * **
3297592 ATTGTACCACGAGTCAAAAAATGAAAACGACCGAAATTAAACCACAAGTCAAAAAAT-AAAAATG
1 ATTAAACCATGAGTCAGAAAATGAAAACGACAG-GACTAAACAACTAGTCAGAAAATGAAAAACC
3297656 A-CAGGG
65 ACCA-GG
* * * * * *
3297662 ATTAAACAATGCA-TTAGAAAATGAAAATGATAGGGATTAAAGC-A-TGAGTCAGAAAATGTAAA
1 ATTAAACCATG-AGTCAGAAAATGAAAACGACA-GGACTAAA-CAACT-AGTCAGAAAATGAAAA
*
3297724 A-CAACAGAG
62 ACCACCAG-G
** * * * * * *
3297733 ATTAAACCACAAGTGA-AAAAGTGAAAATGACCAAGATTAAACCA-TGAGTCAAAAAATG-AAAA
1 ATTAAACCATGAGTCAGAAAA-TGAAAACGA-CAGGACTAAACAACT-AGTCAGAAAATGAAAAA
* **
3297795 CGACCAAA
63 CCACCAGG
* * * * *
3297803 ATTAAACGATGAGTCAAAAAAATGAAAATGATC---ATTAAACAA--AGCATTAGAAAATG-AAA
1 ATTAAACCATGAGTC-AGAAAATGAAAACGA-CAGGACTAAACAACTAG--TCAGAAAATGAAAA
** *
3297862 ATGA-TAGGG
62 ACCACCA-GG
* * * * * *
3297871 ATTAAAGCATGAGTCAGAAAATGTAAAACAACAGGGATTAAACCACAAGTGA-AAAAGTG-AAAA
1 ATTAAACCATGAGTCAGAAAATG-AAAACGACA-GGACTAAACAACTAGTCAGAAAA-TGAAAAA
** *
3297934 TGACCAAG
63 CCACCAGG
*
3297942 ATTAAACCATGAGTCAAAAAATGAAAA
1 ATTAAACCATGAGTCAGAAAATGAAAA
3297969 TGACCAAAAT
Statistics
Matches: 349, Mismatches: 68, Indels: 61
0.73 0.14 0.13
Matches are distributed among these distances:
66 2 0.01
67 9 0.03
68 40 0.11
69 29 0.08
70 102 0.29
71 159 0.46
72 6 0.02
73 2 0.01
ACGTcount: A:0.52, C:0.13, G:0.18, T:0.17
Consensus pattern (70 bp):
ATTAAACCATGAGTCAGAAAATGAAAACGACAGGACTAAACAACTAGTCAGAAAATGAAAAACCA
CCAGG
Found at i:3297895 original size:174 final size:173
Alignment explanation
Indices: 3297519--3298010 Score: 686
Period size: 174 Copynumber: 2.8 Consensus size: 173
3297509 AAAACCACCA
* * * * * * *
3297519 GGATTAAACCATGAGTCAGAAAATG-AAAGCGATCAGGACTAAACAACTAGTCAGAAAA-TGAAA
1 GGATTAAAGCATGAGTCAGAAAATGTAAAAC-AACAGGATTAAACCACAAGTGA-AAAAGTG-AA
* * ** * * * **
3297582 AATGACTAGGATTGTACCACGAGTCAAAAAATGAAAACGACCGAAATTAAACCACAAGTC-AAAA
63 AATGACCAAGATTAAACCATGAGTCAAAAAATGAAAACGACCAAAATTAAACGATGAGTCAAAAA
* *
3297646 AATAAAAATGA-CAGGGATTAAACAATGCATTAGAAAATGAAAATGATAG
128 AATGAAAATGATC----ATTAAACAAAGCATTAGAAAATGAAAATGATAG
3297695 GGATTAAAGCATGAGTCAGAAAATGTAAAACAACAGAGATTAAACCACAAGTGAAAAAGTGAAAA
1 GGATTAAAGCATGAGTCAGAAAATGTAAAACAACAG-GATTAAACCACAAGTGAAAAAGTGAAAA
3297760 TGACCAAGATTAAACCATGAGTCAAAAAATGAAAACGACCAAAATTAAACGATGAGTCAAAAAAA
65 TGACCAAGATTAAACCATGAGTCAAAAAATGAAAACGACCAAAATTAAACGATGAGTCAAAAAAA
3297825 TGAAAATGATCATTAAACAAAGCATTAGAAAATGAAAATGATAG
130 TGAAAATGATCATTAAACAAAGCATTAGAAAATGAAAATGATAG
3297869 GGATTAAAGCATGAGTCAGAAAATGTAAAACAACAGGGATTAAACCACAAGTGAAAAAGTGAAAA
1 GGATTAAAGCATGAGTCAGAAAATGTAAAACAACA-GGATTAAACCACAAGTGAAAAAGTGAAAA
* * *
3297934 TGACCAAGATTAAACCATGAGTCAAAAAATGAAAATGACCAAAATTAAACGATGAGTTAAAAAAT
65 TGACCAAGATTAAACCATGAGTCAAAAAATGAAAACGACCAAAATTAAACGATGAGTCAAAAAAA
3297999 TGAAAATGATCA
130 TGAAAATGATCA
3298011 ACATTAAATC
Statistics
Matches: 289, Mismatches: 21, Indels: 14
0.89 0.06 0.04
Matches are distributed among these distances:
174 169 0.58
175 1 0.00
176 85 0.29
177 33 0.11
178 1 0.00
ACGTcount: A:0.53, C:0.12, G:0.17, T:0.17
Consensus pattern (173 bp):
GGATTAAAGCATGAGTCAGAAAATGTAAAACAACAGGATTAAACCACAAGTGAAAAAGTGAAAAT
GACCAAGATTAAACCATGAGTCAAAAAATGAAAACGACCAAAATTAAACGATGAGTCAAAAAAAT
GAAAATGATCATTAAACAAAGCATTAGAAAATGAAAATGATAG
Found at i:3297989 original size:106 final size:102
Alignment explanation
Indices: 3297452--3299660 Score: 402
Period size: 106 Copynumber: 21.0 Consensus size: 102
3297442 TTTGACTAGA
* * * * *
3297452 ATTAAA-GCATGAGTCAGAAAATGAAAACGACTGGACTAAACC-CTAAGTGAGAAAATGAAAACC
1 ATTAAACG-ATGAGTCAGAAAATGAAAACGACAGGATTAAACCAC-GAGTCA-AAAATGAAAACG
* * * **
3297515 ACCAGGATTAAACCATGAGTCAGAAAATGAAAGCGATCAGG
63 ACCAAGATTAAACCACGAGTCAAAAAATGAAAATGA-CAGG
* * * **
3297556 ACTAAACAACT-AGTCAGAAAATGAAAAATGACTAGGATTGTACCACGAGTCAAAAAATGAAAAC
1 ATTAAACGA-TGAGTCAGAAAATG-AAAACGAC-AGGATTAAACCACGAGTC-AAAAATGAAAAC
* *
3297620 GACCGAA-ATTAAACCACAAGTCAAAAAATAAAAATGACAGGG
62 GACC-AAGATTAAACCACGAGTCAAAAAATGAAAATGACA-GG
* * * * * *
3297662 ATTAAACAATGCA-TTAGAAAATGAAAATGATAGGGATTAAAGCATGAGTCAGAAAATGTAAAAC
1 ATTAAACGATG-AGTCAGAAAATGAAAACGACA-GGATTAAACCACGAGTCA-AAAATG-AAAAC
* * * * *
3297726 -AACAGAGATTAAACCACAAGTGAAAAAGTGAAAATGACCAAG
62 GACCA-AGATTAAACCACGAGTCAAAAAATGAAAATGA-CAGG
* * ** * * *
3297768 ATTAAACCATGAGTCAAAAAATGAAAACGACCAAAATTAAACGATGAGTCAAAAAAATGAAAATG
1 ATTAAACGATGAGTCAGAAAATGAAAACGA-CAGGATTAAACCACGAGTC--AAAAATGAAAACG
* * * * * *
3297833 ATC---ATTAAACAAAGCA-TTAGAAAATGAAAATGATAGGG
63 ACCAAGATTAAACCACG-AGTCAAAAAATGAAAATGACA-GG
* * * *
3297871 ATTAAA-GCATGAGTCAGAAAATGTAAAACAACAGGGATTAAACCACAAGTGAAAAAGTGAAAAT
1 ATTAAACG-ATGAGTCAGAAAATG-AAAACGACA-GGATTAAACCACGAGTCAAAAA-TGAAAAC
* **
3297935 GACCAAGATTAAACCATGAGTCAAAAAATGAAAATGACCAAA
62 GACCAAGATTAAACCACGAGTCAAAAAATGAAAATGA-CAGG
* * * ** * * * * *
3297977 ATTAAACGATGAGTTAAAAAATTGAAAATGATCAACATTAAATCATGAGTTAAAAAACTAAAAAT
1 ATTAAACGATGAGTCAGAAAA-TGAAAACGA-CAGGATTAAACCACGAG-TCAAAAA-TGAAAAC
* ** * * * ** *
3298042 AATTGAA-ATTAAATCACGAGCCAGAAAACAAAAATGACTGGG
62 GA-CCAAGATTAAACCACGAGTCAAAAAATGAAAATGAC-AGG
* * * * * * * * *
3298084 ATTAAACAACT-TGTCAAAAAATGAAAACGATAGGAATTAAATCACGAGGCTGAAAATAAAAATG
1 ATTAAACGA-TGAGTCAGAAAATGAAAACGACAGG-ATTAAACCACGAGTC-AAAAATGAAAACG
* * * ** * * * * *
3298148 ATCGAA-ACTAAATCATAAGACTAAAACTGAAAACGACTGAG
63 A-CCAAGATTAAACCACGAGTCAAAAAATGAAAATGACAG-G
* * * * * * *
3298189 ATTAAACCACGAATCAGAAAATTAAAACAACAGGGATTAAACCATGAGTCAAAAAATGAAAATGA
1 ATTAAACGATGAGTCAGAAAATGAAAACGACA-GGATTAAACCACGAGTC-AAAAATGAAAACGA
* * * * * *
3298254 TCGAGATGAAACCACCAGTTAAAAAATGAAAAAAGATCAGG
64 CCAAGATTAAACCACGAGTCAAAAAATG-AAAATGA-CAGG
* * * * *
3298295 ATTAAACCACGAGTCAAAAAATGAAGACATTGA-A-GATTAAACCACAAGTCAGAGAAAT-AAAA
1 ATTAAACGATGAGTCAGAAAATGAA-A-A-CGACAGGATTAAACCACGAGTCA-A-AAATGAAAA
* * ** * *
3298357 TGACC-AGAATTAAATCATAAGTCAAAAAATGAAAAGGA-TGG
61 CGACCAAG-ATTAAACCACGAGTCAAAAAATGAAAATGACAGG
* * * * * ** * *
3298398 AAATTAAACCACGAGTCAGAAAATGAAAATGATCGGGATTAAATCATAAGTCAAAAAATAAAAAT
1 --ATTAAACGATGAGTCAGAAAATGAAAACGA-CAGGATTAAACCACGAGTC-AAAAATGAAAAC
* * * * ** *
3298463 GACTAGGATTAAACCACGAGTTAGAAAATTTAAATGACTCGG
62 GACCAAGATTAAACCACGAGTCAAAAAATGAAAATGAC-AGG
* * * * * * ** *
3298505 ATTAAATC-ATGAGTCAAAAAATGAAAATGACCGAGATTTAACCATGGGTGGGAAAATGAAAATG
1 ATTAAA-CGATGAGTCAGAAAATGAAAACGACAG-GATTAAACCACGAGT-CAAAAATGAAAACG
*** * * ***
3298569 ATTGAGATTAAACCATGGGTTGGAAAATGAAAACT-ATC-GAG
63 ACCAAGATTAAACCACGAGTCAAAAAATGAAAA-TGA-CAG-G
* * ** * * * ** *
3298610 ATTAAACCATGAGTTAAGAAACAAAAACGATAATGAAAATTACCGAAATAAAATTATGAGTCAAA
1 ATTAAACGATGAG-T------C----A-GAAAATGAAAACGACAG-GATTAAACCACGAGTC-AA
* *** **** *
3298675 AAATGAAAATTG-CTTGGATTAAAATGTGAGTTC--AAAATGAAAATGATC-GAA
52 AAATGAAAA-CGACCAAGATTAAACCACGAG-TCAAAAAATGAAAATGA-CAG-G
* * * * * * ** ** *
3298726 ATTAAA-GCACGAGTCAAAAAATAAAAATGACCGGGA-CAAACCTTG-GGAAGAAAATGAAAACC
1 ATTAAACG-ATGAGTCAGAAAATGAAAACGA-CAGGATTAAACCACGAGTCA-AAAATGAAAACG
* * **
3298788 ACCAAGATTAAACCACGAGTCAGAAAATTAAAGCGATC-GAG
63 ACCAAGATTAAACCACGAGTCAAAAAATGAAAATGA-CAG-G
* * * * *
3298829 ATTAAACGACGAGTCA-AAAATTGAAAAACAACTGGGA-TAATACCATGAGTTAAAAAATGAAAA
1 ATTAAACGATGAGTCAGAAAA-TG-AAAACGAC-AGGATTAA-ACCACGAG-TCAAAAATGAAAA
* ** **
3298892 TGACTGAGATTAAATTAC-ATGT--AAAAA--AAAATGACAAGG
61 CGACCAAGATTAAACCACGA-GTCAAAAAATGAAAATGAC-AGG
* * * *
3298931 ATTAAACAATGCA-TCAAAAAATGAAAACAACAAGGATTAAAGCACGAGTCAAAAAATGTAAAAC
1 ATTAAACGATG-AGTCAGAAAATGAAAACGAC-AGGATTAAACCACGAGTC-AAAAATG-AAAAC
* * * * * *
3298995 -AACAGGGATTAAACCACAACTCAAAAAGTGAAAATGATCAAG
62 GACCA-AGATTAAACCACGAGTCAAAAAATGAAAATGA-CAGG
* * * * * ** ** * * *
3299037 ATTAAACCA-CATGTAAAAAAATGAAAACAACATAAATTAAAATGATGAATCAAAAAATGAAAAT
1 ATTAAACGATGA-GTCAGAAAATGAAAACGACA-GGATT-AAACCACGAGTC-AAAAATGAAAAC
* * * * * * *
3299101 GACCAACACTAAATCACAAGTCAAAGCAATAAAAATGACCAGA
62 GACCAAGATTAAACCACGAGTCAAA-AAATGAAAATGA-CAGG
* * * * * * * * *
3299144 ATCAAATC-ACGAGTCAAAAAATGAGAATGATCGGGATTAAACCACTAGTCAAAAAATAAAAATG
1 ATTAAA-CGATGAGTCAGAAAATGAAAACGA-CAGGATTAAACCACGAGTC-AAAAATGAAAACG
* * **
3299208 ACCGAA-ATTAAATCACGAGTCAAAAAATAAAAATGATCAAA
63 ACC-AAGATTAAACCACGAGTCAAAAAATGAAAATGA-CAGG
* * * * * *
3299249 ATTAAATC-ACGAGTCTA-AAATTGAAAAAGGCTAAGATTAAACCACGAGTCAGAAAATTAAAA-
1 ATTAAA-CGATGAGTC-AGAAAATGAAAACGAC-AGGATTAAACCACGAGTCA-AAAATGAAAAC
* * * * *
3299311 -A-TAAGGGTTCAACCAAGAGTCAAAAAATGAAAATGACCGAG
62 GACCAA-GATTAAACCACGAGTCAAAAAATGAAAATGACAG-G
* * * * * *
3299352 ATGAAACCACT-AGTCAAAAAAAGAAAAACGATCAGGATTAAACCACAAGTCAGAAAATGAAGA-
1 ATTAAACGA-TGAGTCAGAAAATG-AAAACGA-CAGGATTAAACCACGAGTCA-AAAATGAAAAC
* * * * * * * * **
3299415 TAACAGAAATTAAACCATGACTTAGAGAAATAAAAATGACCATA
62 GACCA-AGATTAAACCACGAGTCA-AAAAATGAAAATGA-CAGG
* * ** *
3299459 ATTAAATC-ATGAGTCAAAAAATGAAAATGATGGGAATTAAACCACG-GTCAGAAAATGGAAACG
1 ATTAAA-CGATGAGTCAGAAAATGAAAACGACAGG-ATTAAACCACGAGTCA-AAAATGAAAACG
* * * * * * *
3299522 AACGAGATTAAATCATGAGTTAGAAAA--AAAATGACCATG
63 ACCAAGATTAAACCACGAGTCAAAAAATGAAAATGA-CAGG
* ** * * * * * *
3299561 ATTAAACCATGAGTTTGAAAATGAAAATGACCGGGATTAAACCATGGGTTAAAAAATGAAAATGA
1 ATTAAACGATGAGTCAGAAAATGAAAACGA-CAGGATTAAACCACGAG-TCAAAAATGAAAACGA
** * *
3299626 CTGAGATTAAATCACGAGTCAAAAAATAAAAATGA
64 CCAAGATTAAACCACGAGTCAAAAAATGAAAATGA
3299661 TCGGTATTAA
Statistics
Matches: 1576, Mismatches: 379, Indels: 299
0.70 0.17 0.13
Matches are distributed among these distances:
100 1 0.00
101 32 0.02
102 121 0.08
103 176 0.11
104 120 0.08
105 412 0.26
106 453 0.29
107 171 0.11
108 11 0.01
109 2 0.00
112 1 0.00
115 2 0.00
116 26 0.02
117 45 0.03
118 3 0.00
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.18
Consensus pattern (102 bp):
ATTAAACGATGAGTCAGAAAATGAAAACGACAGGATTAAACCACGAGTCAAAAATGAAAACGACC
AAGATTAAACCACGAGTCAAAAAATGAAAATGACAGG
Found at i:3297997 original size:71 final size:70
Alignment explanation
Indices: 3297452--3335366 Score: 2267
Period size: 70 Copynumber: 535.4 Consensus size: 70
3297442 TTTGACTAGA
* * * ** * * * * * **
3297452 ATTAAAGCATGAGTCAGAAAATGAAAACGA-CTGGACTAAACCCTAAGTGAGAAAATGAAAACCA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3297516 CCAGG
66 CCAAG
* ** * * * * * *
3297521 ATTAAACCATGAGTCAGAAAATGAAAGCGATCAGGACTAAACAACT-AGTCAGAAAATGAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATG-AAAAT
* *
3297585 GACTAGG
64 GACCAAG
** * * ** * *
3297592 ATTGTACCACGAGTCAAAAAATGAAAACGACCGAA-ATTAAACCACAAGTCAAAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACC-AAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3297656 A-CAGGG
65 ACCA-AG
* * * * * * * *
3297662 ATTAAACAATGCA-TTAGAAAATGAAAATGA-TAGGGATTAAAGCATGAGTCAGAAAATGTAAAA
1 ATTAAACCATG-AGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATG-AAAA
* *
3297725 -CAACAGAG
63 TGACCA-AG
** * * * *
3297733 ATTAAACCACAAGTGAAAAAGTGAAAATGACCAAGATTAAACCATGAGTCAAAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3297798 CCAAA
66 CCAAG
* * * * *
3297803 ATTAAACGATGAGTCAAAAAAATGAAAATGATC---ATTAAACAAAGCA-TTAGAAAATGAAAAT
1 ATTAAACCATGAGTC-AAAAAATGAAAATGACCAAGATTAAACCATG-AGTTAAAAAATGAAAAT
* *
3297864 GA-TAGGG
64 GACCA-AG
* * * * * ** * *
3297871 ATTAAAGCATGAGTCAGAAAATGTAAAA-CAACAGGGATTAAACCACAAGTGAAAAAGTGAAAAT
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAAT
3297935 GACCAAG
64 GACCAAG
* *
3297942 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAAATTAAACGATGAGTTAAAAAATTGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAA-TGAAAATG
* *
3298007 ATCAAC
65 ACCAAG
* * * * ** * * ** * **
3298013 ATTAAATCATGAGTTAAAAAACTAAAAATAATTGAA-ATTAAATCACGAGCCAGAAAACAAAAAT
1 ATTAAACCATGAGTCAAAAAA-TGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAAT
***
3298077 GACTGGG
64 GACCAAG
* * * * * * * * * *
3298084 ATTAAACAACT-TGTCAAAAAATGAAAACGA-TAGGAATTAAATCACGAGGCT-GAAAATAAAAA
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGA-GTTAAAAAATGAAAA
*
3298146 TGATCGAA-
63 TGA-CCAAG
* * * * * * * ** * * * * * *
3298154 ACTAAATCATAAGACTAAAACTGAAAACGACTGAGATTAAACCACGAATCAGAAAATTAAAA-CA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3298218 ACAGGG
66 CCA-AG
* * * ** *
3298224 ATTAAACCATGAGTCAAAAAATGAAAATGATCGAGATGAAACCACCAGTTAAAAAATGAAAAAAG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-AAAATG
* *
3298289 ATCAGG
65 ACCAAG
* ** * *
3298295 ATTAAACCACGAGTCAAAAAATGAAGACATTG---AAGATTAAACCACAAGTCAGAGAAAT-AAA
1 ATTAAACCATGAGTCAAAAAATGAA-A-A-TGACCAAGATTAAACCATGAGTTA-AAAAATGAAA
3298356 ATGACC-AG
62 ATGACCAAG
* * * ** * * *
3298364 AATTAAATCATAAGTCAAAAAATGAAAAGGATGGAA-ATTAAACCACGAGTCAGAAAATGAAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* **
3298428 GATCGGG
64 GACCAAG
* * * * * * * **
3298435 ATTAAATCATAAGTCAAAAAATAAAAATGACTAGGATTAAACCACGAGTTAGAAAATTTAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3298500 CTC-GG
66 C-CAAG
* * * * ***
3298505 ATTAAATCATGAGTCAAAAAATGAAAATGACCGAGATTTAACCATGGGTGGGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
***
3298570 TTGAG
66 CCAAG
* *** * *
3298575 ATTAAACCATGGGTTGGAAAATGAAAACT-ATCGAGATTAAACCATGAGTTAAGAAACAAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACCAAGATTAAACCATGAGTT---------AAA--
* * *
3298639 ATAATGAAAATTACCGAA
54 A-AATGAAAATGACCAAG
* ** *** *** *
3298657 ATAAAATTATGAGTCAAAAAATGAAAATTG-CTTGGATTAAAATGTGAGTT-CAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3298720 ATCGAA-
65 A-CCAAG
* * * ** * * * **
3298726 ATTAAAGCACGAGTCAAAAAATAAAAATGACCGGGA-CAAACCTTG-G-GAAGAAAATGAAAACC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAA-AAAATGAAAATG
3298788 ACCAAG
65 ACCAAG
* * * ** * * * * * * **
3298794 ATTAAACCACGAGTCAGAAAATTAAAGCGATCGAGATTAAACGACGAGTCAAAAATTGAAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-AAAATG
***
3298859 ACTGGG
65 ACCAAG
* ** *
3298865 A-TAATACCATGAGTTAAAAAATGAAAATGACTGAGATTAAATTACAT--G-T-AAAAA--AAAA
1 ATTAA-ACCATGAGTCAAAAAATGAAAATGACCAAGATTAAA--CCATGAGTTAAAAAATGAAAA
3298923 TGA-CAAGG
63 TGACCAA-G
* * * * * *
3298931 ATTAAACAATGCA-TCAAAAAATGAAAA-CAACAAGGATTAAAGCACGAGTCAAAAAATGTAAAA
1 ATTAAACCATG-AGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGTTAAAAAATG-AAAA
* * *
3298994 -CAACAGGG
63 TGACCA-AG
** * * * * * *
3299002 ATTAAACCACAACTCAAAAAGTGAAAATGATCAAGATTAAACCA-CATGTAAAAAAATGAAAA-C
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGA-GTTAAAAAATGAAAATG
* *
3299065 AACATAA
65 ACCA-AG
** * * * * ** * * *
3299072 ATTAAAATGATGAATCAAAAAATGAAAATGACCAACACTAAATCACAAGTCAAAGCAATAAAAAT
1 ATT-AAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAA-AAATGAAAAT
3299137 GACC-AG
64 GACCAAG
* * * * * ** * *
3299143 AATCAAATCACGAGTCAAAAAATGAGAATGATCGGGATTAAACCACT-AGTCAAAAAATAAAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAAT
3299207 GACCGAA-
64 GACC-AAG
* * * * * * * * *
3299214 ATTAAATCACGAGTCAAAAAATAAAAATGATCAAAATTAAATCACGAGTCT-AAAATTGAAAAAG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-TAAAAAATGAAAATG
* *
3299278 GCTAAG
65 ACCAAG
* * * * * * * *
3299284 ATTAAACCACGAGTCAGAAAATTAAAAAT-A--AGGGTTCAACCAAGAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3299346 ACCGAG
65 ACCAAG
* * * * * ** * * *
3299352 ATGAAACCACT-AGTCAAAAAAAGAAAAACGATCAGGATTAAACCACAAGTCAGAAAATGAAGAT
1 ATTAAACCA-TGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* *
3299416 -AACAGAA
64 GACCA-AG
* * * * * *
3299423 ATTAAACCATGACTTAGAGAAATAAAAATGACCATA-ATTAAATCATGAGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAAT
***
3299487 GA-TGGG
64 GACCAAG
* * * * * * * *
3299493 AATTAAACCACG-GTCAGAAAATGGAAACGAACGAGATTAAATCATGAGTTAGAAAA--AAAATG
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3299555 ACCATG
65 ACCAAG
*** ** *
3299561 ATTAAACCATGAGTTTGAAAATGAAAATGACCGGGATTAAACCATGGGTTAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
**
3299626 CTGAG
66 CCAAG
* * * * * * * *
3299631 ATTAAATCACGAGTCAAAAAATAAAAATGATC-GGTATTAAATTTCA--AGTTAGAGAAATAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAA--CCATGAGTTA-AAAAATGAAA
* *
3299693 ATGATCAAA
62 ATGACCAAG
* * * ** * *
3299702 ATTAAATCATGAGTTAGAAAACAAAAACGATCAAGATTAAACCATGAGTCAGGAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-------T---AA-AA
* *** *
3299767 TAATGAAAATTATTGAA
55 -AATGAAAATGACCAAG
** * * * * * *
3299784 ATTAAATTACGAGTCAGAAAATGAAAATGA--ATAGAATTAAAGCAAGAGTTAGAAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AG-ATTAAACCATGAGTTAAAAAATGAAAAT
* *
3299847 GACTAGG
64 GACCAAG
* ** * * * * **** ** * *
3299854 ACTAAACGTTAAGTGAGAAAATG-AAATCAATTGTGATTAAATGACGAGTCAAAAAATGAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAAT-GACCAAGATTAAACCATGAGTTAAAAAATG-AAAAT
* *
3299918 AACCAGG
64 GACCAAG
* * * * * * * ** * * *
3299925 AATATACCACGAGTCAAAAAAAGAAAATGACTAGGACTAAATTATAAGTCAAAAAATAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3299990 -CAAGG
66 CCAA-G
* * * ** * *
3299995 ATTAAACAATGTGTCAAAAAATGAAAATGA-CAAGGATTAAAGCACAAGTCAGAAAATGTAAAA-
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGTTAAAAAATG-AAAAT
* *
3300058 CACTAAG
64 GACCAAG
* ** * * * * * * * **
3300065 AATAAACCACAAGTC-AAAAAGGAAAATAATC-GGATTAGACCACGAGTTAGAAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3300128 CCAAA
66 CCAAG
* * * * ** * * * *
3300133 AGTCAACAACGAGTTCAAACAAATGAAAATTGA-CTGGCATTACATCATGAG-TCAAAAATAAAA
1 ATTAAACCATGAG-TCAAA-AAATGAAAA-TGACCAAG-ATTAAACCATGAGTTAAAAAATGAAA
* * *
3300196 AAGCTCCAAA
62 ATG-ACCAAG
* * * * * * * *
3300206 ATCATATCACGAGTCAAAAAAATGGAAAATGACCCAAAATTAAATCACGAGTCT-AAAACTGAAA
1 ATTAAACCATGAGTC-AAAAAAT-GAAAATGA-CCAAGATTAAACCATGAGT-TAAAAAATGAAA
*** *
3300270 GCAATC-AG
62 ATGACCAAG
* * * * * * * *
3300278 AGT-AACCAGGAATCCAAAAATTAAAATGA-CAGAGATTAAATCATGATGTTAGAAAATGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGA-GTTAAAAAATGAAAAT
*
3300341 GACCAGG
64 GACCAAG
* ** * * * * *
3300348 A--GAACCACCAGTC-AAAAATGAAAAACGATC-GGATTAAACCACT-A-TTCAGAAAATGAAGA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCA-TGAGTT-AAAAAATGAAAA
** ***
3300407 CAACGGGG
63 TGACCAAG
** * * * * * * * *
3300415 ATT-AACCACAAGTTAGAAAAT-AAAATGA-CTAGAATTTAATCATGAATCATAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
***
3300477 A-TGGG
65 ACCAAG
** * * * ** * * * * *
3300482 AATTAAACCACAAGTTAGAAAATAAAAACAATCGATATTAAATCC-CGAGTCT-AAAAATAAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAA-CCATGAGT-TAAAAAATGAAAA
*
3300545 TGACCTAG
63 TGACCAAG
* * * * * * * * *
3300553 ATTAAACAATGAGTCAGAAAAT-ACAA--A-C--GACTCAATCATAAGTGAGAAAATGAAAATG-
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3300611 CCTAGG
66 CC-AAG
* * * * * ** ** * * *
3300617 ATTAAATCATGGGTCAGAAAATGAAAATGATCGAGATTAAATAACAAGTCAGAAAATGAAAA-CA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
****
3300681 GTTGG
66 CCAAG
** ** * * ** * * * ** * * ** *
3300686 TATTAAATTACAAGTTAGAGAAACAAAAATGATCAAAATTGAATAACGAGTCAAAAAACAAAAAC
1 -ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* *
3300751 GATCGAG
64 GACCAAG
* * ** * *
3300758 ATTAAACCATCAGTCAGGAAACGAAAATGATAATGAAAATTACCAA-ATTAAATTACGAGTTAGA
1 ATTAAACCAT--G--A-G--TC--AAA--A-AATGAAAATGACCAAGATTAAACCATGAGTTAAA
* * **
3300822 AAA-AAAAATGATCGGG
54 AAATGAAAATGACCAAG
* * * * *
3300838 ATTAAA--ATGCGAGTTAAAAAATGAAAATGA-TAGGAATTAAAACATGAGTCAAAAAATGAAAA
1 ATTAAACCAT--GAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAA
****
3300900 TGATTGGG
63 TGACCAAG
* * * * * * ** * **
3300908 ACTACACCTTGAGTGAGAAAATGAGAACCACCAAGATTAAACCATGAGTCAAAAAATGAAAGCGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3300973 TCGAG
66 CCAAG
** ** * * * * * *
3300978 ATTAAATTACAAGTCAGAAAATGAAAAACGAGCGAA-AGTATACCACGAGTTAAAAAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGA-CCAAGATTAAACCATGAGTT-AAAAAATGAAAA
**
3301042 TGACCGGG
63 TGACCAAG
* * * * ** ** *
3301050 ATTAAATCATGAGTCAAAAAATAAAAATGA-TAGGGATTAAATAATGCA-TTGGAAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATG-AGTTAAAAAATGAAAAT
* *
3301113 GA-TAGGG
64 GACCA-AG
* * * * * * * * *
3301120 ATTAAAGCACGAGTCAGAAAATGTAAAAT-AACAGGGATTAAACCA-CAGTCAAAAAGTGAAATT
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAAT
*
3301183 GACCGAG
64 GACCAAG
** ** * ** * ** * * *
3301190 ATTAAAGAACAAGTCAAAAAATTAAAATGACTGACATTAAATGATGAGTCAAAAAATAAAAATAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3301255 CC-AG
66 CCAAG
* * * * * * * *
3301259 TATTAAATCATGAGTCAAAGAAATAAAAATGACCGAA-ATCAAATCACG-TTTCAGAAAGTGAAA
1 -ATTAAACCATGAGTCAAA-AAATGAAAATGACC-AAGATTAAACCATGAGTT-AAAAAATGAAA
* * *
3301322 ATTATCAGG
62 ATGACCAAG
* * * * ** * *
3301331 ATTAAAGCACTCA-TCAAAAAATGAAAACGA-CAAGAATTAAATCACAAGTCAAAAAATAAAAAT
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
*
3301394 GACTGAA-
64 GAC-CAAG
*** * * * * ** * * *
3301401 ATTATGTCAGGCA-TCTAAAACTAAAAATGACTGAGATTAAACCATGA-ATAAGAAAATTAAAAC
1 ATTAAACCATG-AGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAA-AAAATGAAAAT
*
3301464 GA-TAAGG
64 GACCAA-G
* * * * * * ** **
3301471 ATTAAACCACGAGCCAACAAGTGAAAATGATCGAGATTAAACCACCAGTTAGGAAATGAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-AAAATG
* **
3301536 ATCGGG
65 ACCAAG
* * * * * * * *
3301542 ATTAAACCATGAGTCAAAAAATTAAGA-CAACATGGATTAAACCATGAGTCATAGAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTA-AAAAATGAAAAT
*
3301606 GATC-AG
64 GACCAAG
*** * * ** * *
3301612 AATTAAATCACAT--GTCAAAAAATG-AAATGGA-TGGGAATTCAACTACAAGTCAGAAAATGAA
1 -ATTAAA-C-CATGAGTCAAAAAATGAAAAT-GACCAAG-ATTAAACCATGAGTTAAAAAATGAA
****
3301673 AATGATTGGG
61 AATGACCAAG
* * * * * * *
3301683 ATTAAATCACGAGTCAAAAAATAAAAACGACTAAGATTAAACCATGAGTCAAAAAAT-AACAAAG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAA-AATG
*
3301747 ACCCAG
65 ACCAAG
* ** * * * * **
3301753 ATTAAATCATGAGTCAAAAAATGAAAACAACCAGGATTAAACCATGGGTCAAAAAAGGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
**
3301818 CTGAG
66 CCAAG
* * * * * * ** * **
3301823 ATTAAACCATGGGT-AGAAGATAAAAATGATCAAGATTAAATCACAAG-TCAAAAATGAAAACCA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3301886 TC-GG
66 CCAAG
* ** * * * * *
3301890 TATTAAATCACAAGTCAGAGAAATAAAAATGATCGAA-ATTAAATCATGAGTCAGGAAAAA--AA
1 -ATTAAACCATGAGTCA-AAAAATGAAAATGA-CCAAGATTAAACCATGAGTTA--AAAAATGAA
***
3301952 AATGATTGAG
61 AATGACCAAG
** * * ** ** *
3301962 ATTAATTCACGAGTCAAGAAATGAAAACGATAATGAAAATTATCGAAATTAAATTAT-AGGTCAA
1 ATTAAACCATGAGTCAAAAAATG---A--A-AATGACCA--A--G--ATTAAACCATGA-GTTAA
* * *
3302026 AAAATGAAAATAATCAGG
53 AAAATGAAAATGACCAAG
* ** * * * * * * **
3302044 ATTAAAACGCGAGTTAAAAAATGAAATTGA-CTAGAATTAAAGCACGAGTCAGGAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
* *
3302108 ACTAGG
65 ACCAAG
* * * * * * ** * * *** ** **
3302114 ACTAAACCCTAAATGAGAAAATGAAAACCACCAGGATTAATCCATGAACCAGTAAATGAAAGCGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* **
3302179 TCGGG
66 CCAAG
** * * * * * * ** *
3302184 ATTAAATGATGAGTCAAAAATTAAAAATGA-TAGGGATTAAACAACGCA-TCGAAAAATGGAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATG-AGTTAAAAAATGAAAAT
*
3302247 GA-CAGGG
64 GACCA-AG
* * * * *** * * *
3302254 ATTAAATCACGAGTTAAAAAGTGAAAATGATTGAGATTAAACGATGAGTCAAAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3302319 CC-AG
66 CCAAG
* ** * * * * *
3302323 CATTAAATCACAAGTCAAAGAAAT-AAAATTGATC-AGAATCAAATCATGAGTTAGAAAATAAAA
1 -ATTAAACCATGAGTCAAA-AAATGAAAA-TGACCAAG-ATTAAACCATGAGTTAAAAAATGAAA
** *
3302386 ATGATTATG
62 ATGACCAAG
* * * * * * ** * *
3302395 ATTAAACTACT-ATTCAAAAAATGAAAACGATC-GGAATTAAATCACAAGTCAAAGAAATAAAAA
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAA-AAATGAAAA
**
3302458 TGA-TTAG
63 TGACCAAG
* * * * * * *
3302465 AATCAAATCATGAGTTAGAAAATAAAAATGATCAGGATTAAACCACT-A-TTCAAAAAATGAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTT-AAAAAATGAAAA
* * *
3302528 CGATCAAA
63 TGACCAAG
* ** * * * * * * ** * *
3302536 ATTAAATCACAAGTTAGAAAATAAAAATGACTAAAATTAAATCACAAGTCT-GAAATTGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-TAAAAAATGAAAATG
**
3302600 ACCGCG
65 ACCAAG
* * * * * * *
3302606 ATTAAACCAAGAGTTAGAAAATTAAAACGGA--AAGGATTAAATCATGAGTTAGAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACCAA-GATTAAACCATGAGTTAAAAAATGAAAAT
*
3302669 GATCAAG
64 GACCAAG
* * * * * *
3302676 ATGAAACCACT-AGTCAAAAAATGAAAAATAATCGAGATTAAACCACGAGTCAAAAAAT--AAA-
1 ATTAAACCA-TGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
3302737 GA-CAATGGTG
64 GACCAA----G
* * * * ** * ** * *
3302747 ATTAAACCATAAGTCAGAGAAAT-AAACT-AACTTGAATTAAATCACAAGATAGAAAATGAAAA-
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
* ****
3302809 CAATGGG
64 GACCAAG
* * * * * *
3302816 AATTAAACCAAGAGTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTTAGAAAATAAAAATG
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3302881 ACCAGG
65 ACCAAG
* * * * * *
3302887 ATTAAACCATGAGTCAGAAAATAAAAATGACCCAA-ATTAAATCATGAGTCAGAAAATGAAACTG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3302951 ACTAGG
65 ACCAAG
* * * * * *
3302957 ATTAAACAATGGGTCAAAAAATGAAAATGACCATGATTAAACCATGGGTTAGAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3303022 CTAAG
66 CCAAG
* * ** * * * * * *
3303027 ATTAAATCACGAGTCAAAAAATGAAAATGA-TTAGTTTTAAATCATAAGTCAGAGAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTA-AAAAATGAAAAT
* *
3303091 GATCAAA
64 GACCAAG
* * * * * *
3303098 ATTAAATCACGAGTCAAAAAACGAAAACGATCGAGATTAAACCATGAGTCAGAAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-------T---AA-AA
* *
3303163 TAATGAAAATTA-CTAG
55 -AATGAAAATGACCAAG
** * * * * * **
3303179 AATTAAATTATGAGTCAAAAAATGAAAATTATCTAGATTAAAACGTGAGTTAAAAAATGAAAACA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
3303244 ACCGAA-
65 ACC-AAG
* * * ** *** * * * * * ***
3303250 ATTAAA-GATGAGTCAGAGAATGAAAACAACTGGGACTAAACCCTAAGTGAGAAAATGAAAGCAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3303314 TCGAG
66 CCAAG
* * * * * *
3303319 ATTAAACGATGAGTTAGAAAATGAAAAATGACCAAGATTATACCACGAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3303384 ACTAGG
65 ACCAAG
* * ** * ** *
3303390 ATTAAATCATGAGTCAAAAAATAAAAATGA-CAAGGATTAAATAAT-ACATTGGAAAATGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGA-GTTAAAAAATGAAAAT
*
3303453 GA-CAGGG
64 GACCA-AG
* * * * * *
3303460 ATTAAAGCATGAGTCAAAAAATGTAAAA-CAACAGGATTAAACCATAAGTTAAAAAGTGAAAATG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3303524 ATCGAG
65 ACCAAG
* ** * * ** ** **
3303530 ATTAAATCACAAGTCAAAAAATTAAAATGATC-AGAATTAAATGAAAAGTCCAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
3303594 ACC-AG
65 ACCAAG
* * * * * * * * *
3303599 CATTAAATCATGAGTCAAAGAAATAAAAATGATCGAA-ATCAAATCACGAATCAGAAAATGAAAA
1 -ATTAAACCATGAGTCAAA-AAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAA
* *
3303663 CGACCGAG
63 TGACCAAG
* * * * * * *
3303671 AATAAACCATTAGT-AAAAAA--AAAATGACCGAA-ATTAAATCATTACTCAAAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACC-AAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3303732 ATCGAA-
65 A-CCAAG
* ** * **** * * *
3303738 ATTAAATCATGAGTTTAAAACTGAAAATGATTGGGATTAAACCATGAGTTAGAAAATTAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3303803 -CAGGG
66 CCA-AG
* * * * * *
3303808 ATTAAACCATGAGTCAGAAAATGAATATGACTAAGATGAAACCACCG-GTCAAAAAATGAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATG-AAAAT
** *
3303872 GATTAGG
64 GACCAAG
* * * * ** **** * *
3303879 ATTAAACTACGAGTCAGAAAATGAAGACAATGGGGATTAAACCATGAGTTAGAGAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTA-AAAAATGAAAATG
*
3303944 ACCAAA
65 ACCAAG
* * * * *** *
3303950 ATTAAATCATTAGTCAGAAAATGAAAAGGA-TGGGAATTAAACCATGAGTTAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
****
3304014 ATGGGG
65 ACCAAG
* * * * ** * * * **
3304020 ATTAAATCATGAGTCAAAAAATAAAAATGACCAGGATTAAAGCACAAGTCAAAAAATTAAGACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
****
3304085 TGGGG
66 CCAAG
* * * * * * * * *
3304090 ATTAAACCAGGAGTCAGAGAAATAAAAATGACCAAAATTAAATCACGAGTCAGAAAATGAAAA-C
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3304154 A-CAGGG
65 ACCA-AG
* * * ** * * * **
3304160 ATTAAATCATGAGTCAAAAAATAAAAATGACTGAA-ATTAAACCACAAGTCAGAAAATGAAGACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGAC-CAAGATTAAACCATGAGTTAAAAAATGAAAATG
****
3304224 ATGGGG
65 ACCAAG
* * * ** * * * * * *
3304230 ATTAAACCATGGGTCAGAGAAATAAAAACAACTAAAATTAAATCACGAGTCAAAAAATAAAAATG
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3304295 A-TAGG
65 ACCAAG
* * * * * * * *
3304300 AATTAAACCACGAGAT-AGAAAATGAAAACGACTAGGATTAAATCATGAGTCAAAAAATAAAAAT
1 -ATTAAACCATGAG-TCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
*
3304364 GACCAGG
64 GACCAAG
* * * * * ** * *
3304371 ATTAAACCTTCAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACAAGTCAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACC-AAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3304435 ATCAGG
65 ACCAAG
* *** * * **
3304441 ATTAAACCATG-GATCAAAAAATAAAAATGACTGGGATTAAACCATGGGTTAGAAAATGAAAACA
1 ATTAAACCATGAG-TCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
3304505 ACCAAG
65 ACCAAG
* * * * ** * * * *
3304511 ATTAAATCATAAATCAGAAAATGAAAACAACCAAGATTAAATCATGAGTCAGAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
***
3304576 -TTGG
66 CCAAG
* * ** * * * * * * * **
3304580 TGTTAAATCAAAAGTCAGAGAAATAAAAATGATCGAA-ATTAAATCACGAGTCAGAAAACAAAAA
1 -ATTAAACCATGAGTCA-AAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAA
* *
3304644 TGATC-GG
63 TGACCAAG
* * * * ** *** * *
3304651 GTGAAACCACGAGTTAGGAAATGAAAATGA--AAG--T-----ATGAGTCGGAAATTGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3304707 CTAGG
66 CCAAG
* * * * * ** * * * **
3304712 ACTAACCCCTGAATGAAAAAATGAAAACCACCATGATTAAACTATGAGTCAAAAAATGAAAGCGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
** *
3304777 TTAGG
66 CCAAG
* * ** * *** * * * * *
3304782 ACTAAACAACAAGTCAGAAAATGAAAAATGATTGAGATTATACCACGAATCAAAAATTGAAAATG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
***
3304847 ACTGGG
65 ACCAAG
** * * * * * * * * *
3304853 ATTAAATTATTAGTCAAAAAATAAAAAAGA-TAGTGATTAAGCAACGTA-TCAAAAAATGAAAA-
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATG-AGTTAAAAAATGAAAAT
* ** *
3304915 CAATAGGG
64 GACCA-AG
* ** * ** *** * * *
3304923 ATTAAAGCACAAGTCAGAAAATGTAAAACAACGGGGATTAAACCATAAGTCAAAAAGTGAAAATG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
** *
3304988 ACTGAC
65 ACCAAG
* * * ** * * * ** * * *
3304994 AGTAAACCACGAGTTAAAAAATGAAAACAATCAAAATTAGATGACGAGTCAAAAAATAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3305059 CC-AG
66 CCAAG
* * * * ** * * * * * *
3305063 CATTAAATCATGAGTCAGAGAAATAAAAAAGA-CTGGAGTCAAATCACGAGTCAGAAAATAAAAA
1 -ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAGA-TTAAACCATGAGTTAAAAAATGAAAA
*
3305127 TGACCAAA
63 TGACCAAG
* * * * * * * * * * *
3305135 ATTAAATCACGAGTCTAAAACTAAAAATGA-CAGGTATTAAACTATGAGTCAGAAATTTAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
* *
3305199 -GCAGGG
65 ACCA-AG
* * * * ** * *
3305205 ATTAAACGATG-GTTAGAAAATGAAAATGACCAAGATGAAACCACCAATCAAAAAATGAAAA--A
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3305267 CAATAGGG
66 CCA-A--G
* * * ** * * * * * *
3305275 ATTAAACCACGAGACAGAAAAA-GAAGACAACGAGGATTAAACCACGAGTCAGAGAAATAAAAAT
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAGATTAAACCATGAGTTA-AAAAATGAAAAT
*
3305339 GACCAAA
64 GACCAAG
* * ** * * *** * *
3305346 AGTAAATCACAACTCAGAAAATGAAAATGA-TGGGAATTAAACCATGAGTCAAAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
*
3305410 ACCAGG
65 ACCAAG
* * * * * * * * * * *
3305416 ATTAAATCATGAGTTAGAAAATAAAAACGACCAGGATTAAGCCACGAGTCAGAAAATAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3305481 CCCAG
66 CCAAG
* *** * * * *
3305486 ATTAAATCATGAGTCAAAAAATGAAAATGATTGAGATTAAACGATGGGTTAGAAAATAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3305551 CCAAG
66 CCAAG
* * * * * * * ** *
3305556 ATTAAACCATGGGTTAGAAAAGGAAAATGATCGAGATTAAATCATGAGCCAAAAAATAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3305621 TC-AG
66 CCAAG
* ** * * * ** * * *
3305625 TATTAAATCACAAGTTAGAGAAATAAAAATGATTGAA-ATTAAATCATGAGTCAGAAAATGAAAA
1 -ATTAAACCATGAGTCA-AAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAA
*
3305689 TGATCAAG
63 TGACCAAG
* * ** * * ** * *
3305697 ATCAAACCATGAGTTAGGAAACGAAAACG-GTAATGA-AAATTACCA-GAATTAAATTACAAGTT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-GATTAA--ACCATGAGTTAAA--A-AA--T
* * * *
3305759 AAAAACTAAACACG
58 GAAAA-TGACCAAG
* * ** *
3305773 AGTT-AA--A--A-------AATGAAAATGATCGAA-ATTAAAGCACAAGTTAGAAAATGAAAAT
1 A-TTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAAT
***
3305825 GACTGGG
64 GACCAAG
* * * * ** * * * * ***
3305832 ACTTAATCC-TAAGTGAGAAAATGAAAACCACCAGGATTAAACCACGAGTCAAAATATGAAAGCA
1 A-TTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3305896 ATCGAG
65 ACCAAG
* * * * * * * * *** *
3305902 AATAAACGATGAGTCAGAAAATGAAAAATGATCGAA-ATTATACCACGAATCAAATTTTGAAAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAAT
*
3305966 AACCAAG
64 GACCAAG
* * * * * **
3305973 ATTAAATCATGAGTCAAAAAATAAAAATGA-CAGGCATTAAATAACA-CA-TCGAAAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATT-AA-ACCATGAGTTAAAAAATGAAAA
3306035 TGA-CATAG
63 TGACCA-AG
* * ** * * * *
3306043 ATTAAAGCACGAGTCAAAAAATGTAAAAT-AATAGGGATTAAACCATAAGTCAAAAAGTGAAAAT
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAAT
* *
3306107 GATCGAG
64 GACCAAG
* * * * * * * *
3306114 ATTAAACCATGAATCAAAAAATGAAAATGACTAAAATTAATCTACGAGTCAAAAAATGAAAAGGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* * *
3306179 TCGAC
66 CCAAG
* * * * * * *
3306184 ATTAAATCATGAGTCAAAGAAATAAAAATGATCAAAATCAAATCACT-AGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAA-AAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAAT
*
3306248 GACCAAA
64 GACCAAG
* * * * * * * * *
3306255 ATTTAATCACGAGTCAAAAAATAAAAATGGCCAAAATTAAATCATGA-TTCTAAAACTGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTT-AAAAAATGAAAATG
**
3306319 ACTGAG
65 ACCAAG
* * * ** * * * * ** *
3306325 ATTAAACGATGGGTCAGAAAATTTAAATGA-TAGGGATTAAACCACGAGTCAGTAAATGAAAATA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAATG
*
3306389 ACCATG
65 ACCAAG
* ** * * * * * **
3306395 ATGAAACCACCAG-CTAGAAAATG-AAA--A--ATGA-T---CCACGAGTCAAAAAATGAAGACA
1 ATTAAACCATGAGTC-AAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
****
3306450 ATGGGG
65 ACCAAG
** * * * ** * * *
3306456 ATTAAACCACAAGTCAGAGAAATAAAAATGACCATA-ATTAAATCACAAGTCAGAAAATGAAAAG
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAAT
***
3306520 GA-TGGG
64 GACCAAG
* ** ** * * * * **
3306526 AATTAAACCATGAGTCCAAAAATGAAAACAATTAGGATTAAATCACGAGTCAAAAAAT-AAAAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
***
3306590 AGCTGGG
65 A-CCAAG
* * ** * * * *
3306597 ATTAAACCACGAGTTAGTAAATAAAAATGACCCAGATTAAATCATGAGTCAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3306662 -CAGGG
66 CCA-AG
* * * * * * * * *
3306667 ATTAAACTATGGGTTAGAAAAT-ACAAATGATCGAGATTAAACCATGCGTTAGAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGA-AAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3306731 ACCGAG
65 ACCAAG
* ** * * * * * * * *
3306737 ATTAAATCACAAGTCAAAAAATAAAAATGATC-GGTATTAAATCATAAGTCAGAGAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTA-AAAAATGAAAAT
* *
3306801 GATCAAA
64 GACCAAG
* ** * ** * *
3306808 ATTAAATCACAAGTCAAAAAATGAAAACGATGAAGATTGAACCAAGAGCTAGGAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAG-T------T----A-AA
** *
3306873 AAATGAAAAT-TGCGAG
54 AAATGAAAATGACCAAG
* ** * * * **
3306889 AATTTAATTACGAGTCAGAAAATGAAAATGATCGGGATTAAA--ATGCGAGTTAAAAAATGAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCAT--GAGTTAAAAAATGAAAA
*
3306952 CGACCGAA-
63 TGACC-AAG
* * * * *** ** * * * **
3306960 ATTAAAGCACGAGTTAAAAAATGAAAACGACTGGGACAAAACCCTGAGTGAGAAAATGAAAACCA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3307025 CCATG
66 CCAAG
* *** * * ** * * *
3307030 ATTATACCATGAGTCAAAAAAATGAAAGCAATCGAGATTAAATGACGAGTCAGAAAATGAAAAAT
1 ATTAAACCATGAGTC-AAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-AAAAT
* *
3307095 GATCGAG
64 GACCAAG
* ** * * ** * * * * * *
3307102 ATTATACCACAAGTTAAAAAATGAAAATGATCGGGATTAGATCACGAATCAAAAAATAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3307167 -CAGTG
66 CCA-AG
** * * * * *
3307172 ATTAAATAATGCA-TCGAAAAATGAAAATGA-TAGGGATTAAAGCATGAGTCAAAAAATGTAAAA
1 ATTAAACCATG-AGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATG-AAAA
* ****
3307235 TAATGGCG
63 TGACCAAG
* ** ** *
3307243 ATTAAACCATGAGTCAAAAAGTGAAAATGACTGAGATTAAACCACAAGTTAGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
***
3307308 -TTGG
66 CCAAG
* ** * * * *** * ** * *
3307312 AATAAAATGATGAGTGAGAAAATGAAAATCA-TTGGCATTAAATCACAAGTCAAAGAAATAAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAA-AAATGAAAA
* *
3307376 TGATC-GG
63 TGACCAAG
* * ** * **** * * * *
3307383 AATCAAATCACAAGTCAGAAAATGAAAATGATTGGGACTAAACCATTAGTAAAAAAATGAAAACG
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
3307448 ACCGAA-
65 ACC-AAG
* * * * * * ** * *
3307454 ATTAAATCATGAGTTAGAAAATAAAAATGATCGAA-ATTAAATCACAAGTCT-AAAATTGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGT-TAAAAAATGAAAAT
**
3307517 GACCGGG
64 GACCAAG
* * * * * *
3307524 ATTAAACCATGAGTCAAAAAATTAAAATGA-TAGGGATTAAACCAGGAGTCAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAATG
*
3307588 ACCTAG
65 ACCAAG
* ** * * * * * * *
3307594 ATGAAACCACAAGTCAGAAAATGAAAAAGGATCAGGATTAAATCATGAGTTAGAAAATGAAAA-C
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3307658 AACAAGG
65 ACCAA-G
* * * * * * * *
3307665 ATTAAACCACGAGTCAGAGAAATAAAAATGA-CTAGAATTAAATCATCAGTTAGAAAATGAAAAC
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
* *
3307729 GA-TAGG
64 GACCAAG
* *** * ** * * *
3307735 AATTAAAGCATGAGTC-AAAAATGAAAATGACTGGGATTAAATCACAAGTCAGAAAATAAAAATG
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3307799 ACCAGG
65 ACCAAG
* * * * * *
3307805 ATTAAACCATGAGTTC-AAAAATAAAAATGACCCAGATTAAATCATGAGTTAGAAAATTAAAACG
1 ATTAAACCATGAG-TCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
***
3307869 ACTGGG
65 ACCAAG
* * * * * *
3307875 ATTAAACCATGGGTCAAAAAATAAAAATGACTAGGATTAAACCATGGGTTAGAACAA-GAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTA-AAAAATGAAAATG
****
3307939 ATTGCG
65 ACCAAG
* * ** * * *** * ** ** * * *
3307945 ACTAAATCACAAGTTAGAAAATGAAAATGA-TTGGTACTAAATGACAAGTCAGAGAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTA-AAAAATGAAAAT
* *
3308009 GATCAAA
64 GACCAAG
* *** * * * **
3308016 ATTAAATCATGAGTCAAAAAATGAAAATGAGTGAGATTAAACCAAGAGTCAAGAAACAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3308081 -TAATG
66 CCAA-G
* * * * * * *
3308086 A--ATATCACGAGTCAAAAAATGAAAATGATCAGGATTAAAACGTGAG-TAAAAAATTGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAA-TGAAAATG
3308148 ACCGAA-
65 ACC-AAG
* * * * * * * * **
3308154 ATTAAAACACGAGTCAAAAAATGAAAATGA-TAGGACTAAACCCT-AATTGAGAAAATGAAAACC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTT-AAAAAATGAAAATG
*
3308217 A-CTAG
65 ACCAAG
* * * ** ** * *
3308222 A-TAAA-CA-GACTCAAAAAATGAAAGTGCATCGGGA-TAAATGATGAGATCAAAAAT-AAAAT-
1 ATTAAACCATGAGTCAAAAAATGAAAATG-ACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3308281 ACCGAG
65 ACCAAG
* * * ** ** * * *
3308287 CTTATAACCATAAGTCAAAAAATGAAAATGACCAGGATTAAATGATGAAAT-CAAATTAAAAATG
1 ATTA-AACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3308351 A-TAGGG
65 ACCA-AG
* ** * * * * * *
3308357 ATTAAACAACA-CA-TC-TGAAATGAAAACG--CAGGGATTAAGCACA-GA--CAAAGAGT-AAA
1 ATTAAAC--CATGAGTCAAAAAATGAAAATGACCA-AGATTAAAC-CATGAGTTAAAAAATGAAA
* * *
3308413 ATCAACATG
62 ATGACCAAG
* * * *
3308422 ACTTAAACCA-CACGTCAAAAAACTGAAAATGACCCAGATTAAATCATGAGTCAAAAAATGAAAA
1 A-TTAAACCATGA-GTCAAAAAA-TGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAA
* *
3308486 CGACCAAA
63 TGACCAAG
* ** * *** * * * * *
3308494 ATCAAATGATGAGTCAAAAAATAAAAATGA-TGGGCATTAAATCACGAGTCAAAGAAATAAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAA-AAATGAAAAT
3308558 GACCGAA-
64 GACC-AAG
* * * ** * **
3308565 ATCAAATCATGAGTCAAAAAATG-AAATGATCGGGATTAAACCACT-AGTCAAAAAACAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAATG
**
3308628 A-CTGG
65 ACCAAG
* ** * * * ** **
3308633 AATTAAATCAAAAGTCAAAAGATAAAAATGATCGAA-ATTAATTCATGAGTCT-AAATTTGAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGT-TAAAAAATGAAAA
* * **
3308696 CGATCGGG
63 TGACCAAG
** * * *
3308704 ATTAAACCACAAGTCAAAAAATTAAAATGACCAAGATGAAACCACT-AGTCAAAAAATGACAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATG--AAAA
* **
3308768 TGATCGTG
63 TGACCAAG
* * * ** *** ** * * **
3308776 ATTAAGCCATGAATCAAAAAATGAAGACAACGGGGATTAAACCACCAGTCAGAGAAACAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTA-AAAAATGAAAATG
3308841 ACC-AG
65 ACCAAG
* * * ** * * ** * * **
3308846 AATTAAATCATGAGTAAAAAAATAAAAAACATCAGGATTAAATAATGAGTCAAAAAATAAAAACA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3308911 ACC-TG
65 ACCAAG
* * * * * * * *
3308916 CATTAAATCATGAGTCAGAAAAATGAAAATGACCAAGATTAAACCAAGGGTCAGAGAATGACAAC
1 -ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
*
3308981 GA-CAGG
64 GACCAAG
* * * *** * * *
3308987 ATTAAACCAT-AGGTTAGAAAATGAAAACGAATGAGATTAAATCATGAGTCAGAAAATGAAAATG
1 ATTAAACCATGA-GTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*** *
3309051 ATTGAT
65 ACCAAG
* * * * ** *** *
3309057 ATTAAATCACT-AGTC-AGAAGTGAAAAGGACTGAGATTAAACCCCAAGTCAAAAAATGAAAATG
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3309120 ACTAAA
65 ACCAAG
** ** * * * * * * *
3309126 ATTAAATGACAAGTCAAAGAAATAAAAATGA-CTAGAATCAAATCACGAGTAAAAAAATAAAAAT
1 ATTAAACCATGAGTCAAA-AAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
* *
3309190 GACTAGG
64 GACCAAG
** ** * * * * ** * * *
3309197 ATTAAATAACT-AGTCAAAAAACAAAAATGACTAAAAATAAATCACAAGTCAGAAAATAAAAATG
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3309261 ATCGAA-
65 A-CCAAG
* * * * * * ** * *
3309267 ATAAAATCATGAGTCTAAAACTGAAAACGA-TAAGGATTAAACCACCAGTCAAAAAATTAGAAA-
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGTTAAAAAATGA-AAAT
*
3309330 GA-CAGGG
64 GACCA-AG
* ** ** * * *
3309337 ATTAAACCATAAGT-AAGAAAATGAAAACAACCGTGATGAAACCAAT-AGTCAGAAAATGAAAAA
1 ATTAAACCATGAGTCAA-AAAATGAAAATGACCAAGATTAAACC-ATGAGTTAAAAAATG-AAAA
** * **
3309400 CAATCGTG
63 TGACCAAG
* * * * * * * * *
3309408 ATTAAACCATGAATCAAAAAATGAAGA-CAACAGGGATTAAACCATAAGTCAGAGAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTA-AAAAATGAAAAT
* **
3309472 TA-TTAG
64 GACCAAG
* * * *** * *
3309478 AATT-AACTCATGAGTCAGAAAATAAAAACGA-GGGGAATTAAACCATGACTCAAAAAATGAAAA
1 -ATTAAAC-CATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAA
**
3309541 TGATTAAG
63 TGACCAAG
* * ** * * * * * * * *
3309549 TTTAAATCACAAGTTAGAAAATAAAAAAGATCAAGATTAAACTATGAGTCAAAAAAGTAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAA-TGAAAATG
*
3309614 ACTC-GG
65 AC-CAAG
* * * * * * * *
3309620 ATTAAATCACGAGTCAGAAAATGCAAACGACCAGGATTAAACCATCAG----AAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
***
3309681 CTGGG
66 CCAAG
* * * ** ** * ** * *
3309686 ATTAAACCATGGGTTAGAAAATGAAAACAACTGAGATTAAATCACAAGTCAGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
***
3309751 -TTGG
66 CCAAG
* ** * * * * * * * *
3309755 TATTAAATCACAAGTC-AAAAATAAAAATGATCAAAATTAAATCACGAGTCAGAAAACT-AAAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTA-AAAAATGAAAAT
*
3309818 GATCAAG
64 GACCAAG
* ** **
3309825 ATTAAACCATGAGTCAGGAAACAAAAATGATAATGAAAATTAGGAGAATTAAATTATGAG-TAAG
1 ATTAAACCATGAGTC-----A-AAAAATGAAAATG---ACCA--AG-ATTAAACCATGAGTTAA-
* **
3309889 AAAATGAAAATGATCGGG
53 AAAATGAAAATGACCAAG
*** * * * * ** * * *
3309907 ATTAAAATGTGAGTTAAAAAATGAAAACAGTCGAA-ATTAAAATAGGAGTCAAAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
**
3309971 ACTGAG
65 ACCAAG
* * * * ** * * ** * * * **
3309977 ACTAAACCCTGAGTGAGAAAATGAAAACCACCAGGATTAAAACACAAGTCAGAAAATGATAGCGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
**
3310042 TTAAG
66 CCAAG
* * * * **** * * * *
3310047 ATTAAACGATAAGTCAGAAAATGAAAAACGATTGGGATTATACCATAAGTCAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3310112 ATCGAG
65 ACCAAG
* * * * * * *
3310118 ATTAAATCATGAGTCAAAAAATAAAAATG-GCAGGGATTAAACAAT-ACG-TCAGAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGA-GTTAAAAAATGAAAAT
*
3310180 GA-CAGGG
64 GACCA-AG
* * * * * * * *
3310187 ATTAAAGCACGAGTCAAAAAATGTAAAAT-AACAGGGATTAAACCATAAATCAAAAAGTGAAAAT
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAAT
3310251 -AGCCAAG
64 GA-CCAAG
* * * * ** * *
3310258 ATTAAACCATGAGTCAGAAAATGAAAACGATCAAAATTAAATGATGAGTCAAAAAGTGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3310323 CC-AG
66 CCAAG
** ** * * ** * * * ** * * *
3310327 CATTAAGTCACAAGTTAAAAAAAT-AAAACGAAAAAAATCAAATCACAAATCAGAAAATGAAAAT
1 -ATTAAACCATGAG-TCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* *
3310391 GACTAGG
64 GACCAAG
* * * * * * * * * ** * *
3310398 ATTAAA-AATAAAAATGACCAAAAT-CAAATCA-AAAG-TCAAAAAATGA---AAATGAGCAGGA
1 ATTAAACCAT--GAGTCA-AAAAATGAAAATGACCAAGATTAAACCATGAGTTAAA--A-AATGA
**
3310456 TTAAACCA-CAAG
60 --AAATGACCAAG
** * * * * ** * * * *
3310468 -TTAAAAAATGAAAATGACCAAAATTAATTCGTGAATCTAAAACTAAAAACAACCAAGA-TTAAA
1 ATTAAACCATG--AGTCA-AAAAATGAA--AATG-A-CCAAGA-T---TA-AACCATGAGTTAAA
** * * *
3310531 CCATG--AGTCA-GAAG
54 AAATGAAAATGACCAAG
** * * * * * ** *
3310545 ATTAAAATGATAGGGATTAAACCATGAGTCAGAATGAAAATGACTAAGATGAAACCACCAGTCAA
1 ATT-AAACCAT-GAG-TCAAA--A--AAT--G-A--A-AATGACCAAGATTAAACCATGAGTTAA
* *
3310610 AAAATGAAAATGATCATG
53 AAAATGAAAATGACCAAG
* * * * * * * * *
3310628 ATTAAACCATGAGTCAGAAAATGAAGA-CAACAAGGATTAATCCACGAGTCAGAGAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGTTA-AAAAATGAAAAT
*
3310692 GACCAAA
64 GACCAAG
* * *** ** *
3310699 ATTAAATCATGAGTCAAAAAATAAAAATGA-TTGGAATTAAACCACAAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
****
3310763 ATTGGG
65 ACCAAG
* * * * *
3310769 ATT-AA--ATCA--C-AAAAA-G----T-ACCCAGATTAAACCATGACTCAAAAAATAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
**
3310822 CCTGG
66 CCAAG
*** * ** * * * * **
3310827 ATTAAATTGTGAGTCAAAAAATGAAAATGATCGGGATTAAACCATGGGTCAGAAAAGGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3310892 TCAGG
66 CCAAG
* * * * * * * *
3310897 ATTAAATCAT-AGGTTAGAAAATGAAAATGATCAAGATTAAATCATAAGTCAAAATATGAAAATG
1 ATTAAACCATGA-GTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3310961 ATC-GG
65 ACCAAG
* * ** * * * * *
3310966 TACTAAATCACAAGTCAGAGAAATAAAAATGATCGAA-ATTAAATCATAAGTTAAAAAATGAAAA
1 -ATTAAACCATGAGTCA-AAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAA
** * *
3311030 CAATCGAG
63 TGACCAAG
* ** ** *
3311038 ATTAAACCATGAGTCAAGAAATGAAAATGATAATGAAAATTACTGGAATTAAATTATGAG-TCAA
1 ATTAAACCATGAGTC----AA--AAAATGAAAATGACCA--A---G-ATTAAACCATGAGTTAAA
* *
3311102 AAATGAGAATGATCAAG
54 AAATGAAAATGACCAAG
* * * * * * * *
3311119 ATTAAAACACGAGTTAAAAAATGAAAACT-ACC-AGAATTGAAGCACGAGTCAAAAAATGAAAAG
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
***
3311182 GACTGGG
64 GACCAAG
* * * * ** * *
3311189 ATGAAACCCTGAGTGAGAAAATGAAAACCACCAAGATTAAACCATGAGTCAGAAAAT-AAAAGTG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAA-TG
*
3311253 A-TAAG
65 ACCAAG
* * ** * * ** *
3311258 ATTAAACGATGAGTCAAAAAATGAAAAACGATTAGGATTATACCACAAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3311323 ACTAGG
65 ACCAAG
* * * *** * * *
3311329 ATTATACCTTGAGT-AAAAAACTGAAAACGACTGCGATTAAATCATGAGTCAAAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAA-TGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3311393 A-TAAGG
65 ACCAA-G
* * * * * *
3311399 ATTGAACAACGCA-TCAAAAAATGAAAACT-A-CAAGGATTAAAGCACGAGTCATAAAATAT-AA
1 ATTAAACCATG-AGTCAAAAAATGAAAA-TGACCAA-GATTAAACCATGAGT--TAAAAAATGAA
* * *
3311460 AA-CAACAGGG
61 AATGACCA-AG
* ** * * ** * * ** *
3311470 ATTAAATCACAAGACAAAAAGTGAAAATGACCAAGATTAAACCACAAGTCAGAAAATGGGAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3311535 CC-AG
66 CCAAG
* ** * * * ** * **
3311539 AATTAAACAACAAGTCAAAAAATGAAAATGA-CTAGCTTTAAATCACAAGTCAAAGAAACAAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAA-AAATGAAAA
* *
3311603 TAATCGAA-
63 TGA-CCAAG
* * * * * ** * *
3311611 ATCAAATCACGAGTTAGAAAATGAAAATGATTGAA-ATTAAAACACT-AGTCAAAAAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCA-TGAGT-TAAAAAATGAAAA
* *
3311674 TGATCAAA
63 TGACCAAG
* * * * * * * * *
3311682 ATTAAATCACGAGTGAAAAAATAAAAATGACTAAAATTAAATCACGAGTCT-AAAATTGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-TAAAAAATGAAAATG
* *
3311746 ACTAGG
65 ACCAAG
* * **** * * *
3311752 ATTAAACCATGAGTCAAAAAATTAAAA-CAATTGGATTAAACTACGAGTCAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3311816 CCGAG
66 CCAAG
* ** * ** * * * * * **
3311821 ATGAAACCACCAGTCATAAAATGAAAAATGATTATGACTAAACCATGGGTCAAAAAATGAAGACA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
****
3311886 ATGGGG
65 ACCAAG
* * * * * * *
3311892 ATTAAACCACT-AGTTAGAGAAATAAAAATGACC-AGAATTAAATCACGAGTCAGAAAATGAAAA
1 ATTAAACCA-TGAGTCA-AAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAA
* ***
3311955 CGA-TGGG
63 TGACCAAG
* * * * * * *
3311962 AATTAAACCATGAGTCAGAAAATAAAAATGACCAGGATTAAACCACGAGTCAGAAAATAAAAATG
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
3312027 ACTCAA-
65 AC-CAAG
* * * *** * * * ** *
3312033 ATTAAATCATAAGTCAGAAAATGAAAATGACTTGGATCAAACCCTGGGTTCGAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3312098 CTAAG
66 CCAAG
* * * *** * * *
3312103 ATTAAATCACGAGTTAAAAAATGAAAAATGA-GTGGTATTAAATCACAT--GTCATAGAAATAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAG-ATTAAA-C-CATGAGTTA-AAAAATGAA
* * *
3312165 AACGATCGAG
61 AATGACCAAG
* * * * * ** * * *
3312175 AATAAAACCATGAGTCAGGAAATGAAAACGATAATGAAAATTATCGAAATTAAATTATGTGTCAG
1 -ATTAAACCATGAGTC---------AAA--A-AATGAAAATGACCAAGATTAAACCATGAGTTAA
* ****
3312240 AAAATGAAAAAGATTGGG
53 AAAATGAAAATGACCAAG
*** * * * ** * * *
3312258 ATTAAAATGTGAGTTAAAAATTGAAAATGATC-AGAATTAATGCACGAGTTAGAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
***
3312322 ACTGGG
65 ACCAAG
* * * * * * * * **
3312328 ACTAAAGCC-TGAGTGAGAAAATGAAAA-GCACTAGGATTAAACCACGAGTCAGAAAATGAAAGC
1 ATTAAA-CCATGAGTCAAAAAATGAAAATG-ACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* * *
3312391 AATCGAG
64 GACCAAG
** * * * ** * *
3312398 ATTAAATGATGAGTCAAAAAATGAAAAATGA-TAGGGATTATACCACAAGTCAAAAAATGAAAAC
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAAT
* ****
3312462 AATGGGG
64 GACCAAG
* ** * * * * ** *
3312469 ATTAAATCACAAGTCAAAAAATAAAAAAGA-TAGGGATTAAATAATGCA--TAGGAAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATG-AGTTA-AAAAATGAAAA
* **
3312531 -CAATAAGG
63 TGACCAA-G
* * ** **** ** *
3312539 ATTAAAGCATGAGTCAGAAAATGTAAAACAATGGGGATTAAACCACAAGTTAAAAAGTGAAAATG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
3312604 ACCAAG
65 ACCAAG
*** * * ** ** *
3312610 ATTAAACCGCAAGTCAAAAAATGAAAA-CAACTGGAATTAAATGATGAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
* *
3312674 ATCAAC
65 ACCAAG
* * * * * * * *
3312680 ATTAAATCACGAGTCAAAGAAATAAAAACGATCGAA-ATCAAATCATGAGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAA-AAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* **
3312744 GATCGGG
64 GACCAAG
*** * ** * *
3312751 ATTAAACCACT-AGTCAAAAAATGAAAATGATGTA-ATTAAATCACAAG-CAAGAAAATAAAAAT
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAA-AAAATGAAAAT
*
3312813 GATCGAA-
64 GA-CCAAG
* * * * ** * *
3312820 ATTAAATCATGAGTCTAAAACTGAAAATGATCGGGATTAAACCATGAGTCAAAGAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAA-AAATGAAAATG
* *
3312885 AACAAA
65 ACCAAG
* * * * * * *
3312891 ATTAAATCATGAGTCAGAAAATGAAAATGA-TAGGAATTAAACCAT-AATCAAAAAATGAAAGTG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
*
3312954 ACTAAG
65 ACCAAG
* ** * * * * ** * * * **
3312960 ATTAAATCACAAGTAAAAAAATAAAAATGACCAGGATTAAGCCATCTGTCAAAATATAAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3313025 ACAAA
66 CCAAG
* * * * * * * * *
3313030 ATTAGATCACGAGTCAAAAAATGAAAAGGACCAGGATTAAACCATG-GGTCAGAAATAAAAAT-A
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3313093 CTAGG
66 CCAAG
* * * ** * * *
3313098 ATTAAACCATGGGTTAGAAAATGAAAACAATCAAGATTAAATCATGAGTCAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3313163 TC-AG
66 CCAAG
* * * * * * * * * * *
3313167 TATTAAATCATAAGTTAGAGAAATAAAAATGATCAAAATTAAATCATGAGTCAAAAAACGAAAAC
1 -ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* ***
3313232 AATTGAG
64 GACCAAG
* * * ** *
3313239 ATTAAACCATGAGTCAAGAAACAAAAATGATAATGAAAATTACTAGAATTAAATTATGAGTTAGA
1 ATTAAACCATGAGTC-----A-AAAAATGAAAATG---A--CCAAG-ATTAAACCATGAGTTAAA
*
3313304 AAATGAAAATGA-TAAGG
54 AAATGAAAATGACCAA-G
* * * * * * * * * *
3313321 ATTAAAGCATAAGTTAGAAAATGAAAA-CACCAA-ATTAAAGCACGAGTCATAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
****
3313384 TTGGG
66 CCAAG
* * * * ** * ** * **
3313389 ACTAAACCTTGAGTGAGAAAATGAAAACCACCAGGATTAAACCACAAGTTAGAAAATGAAAGCGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
***
3313454 -TGGG
66 CCAAG
* * * * * * **
3313458 ATTAAACGATGAGTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3313523 CCAAA
66 CCAAG
* ** *
3313528 ATTAAACCATGAGTCAAAAAAAGAAAGATGACTTAGATTAAATCACA-G-GTCAAAAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAA-ATGACCAAGATTAAA-C-CATGAGTTAAAAAATGAAAA
* * *
3313591 CGATCGAG
63 TGACCAAG
* * *** * * *
3313599 ATTAAACCAT-AGGTTAGAAAATGAAAATGACTGGGATTAAACCATGGGTTAGAAAATGAAAACG
1 ATTAAACCATGA-GTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3313663 ATCGAG
65 ACCAAG
* * * * *
3313669 ATTAAATCATGAGTCAAAAAATGAAAATGATC-AGTATTAATTCACA-G-GTTAGAGAAATAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAA-AC-CATGAGTTA-AAAAATGAAA
**
3313731 ATGATTGAA-
62 ATGA-CCAAG
* * * * * *** * * *
3313740 ATTAAATCACGACTTAGAAAATGAAAATGATTGAGATTAAACCACGAGTCAAGAAATGAGAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAAT--GAA-AA
** *
3313805 T-AGTGAAA
63 TGA-CCAAG
* *** * * * * * *
3313813 ATGAAA--ATGA--C-AGGGATTAAAGCGTGAGTCAAAAAATGTAAAACAATGGGGATTAAACTA
1 ATTAAACCATGAGTCAAAAAATGAAA--ATGA--C-CAAGAT-T-AAACCAT---GAGT----T-
* *
3313873 CAAGTCAAAAAGTGAAAATGATCGAG
51 --A---AAAAA-TGAAAATGACCAAG
* * ** * * *
3313899 ATTAAATCATAAGTCAAAAAATGAAAACAACTAAAATTAAA-CAAGAAGTTAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATG-AGTTAAAAAATGAAAATG
**
3313963 A-CTGG
65 ACCAAG
* * * * * * *
3313968 CATTAAATCATGAGTGAAAGAAAT-AACAATGACTAAAATTGAATAACA--AGTCAAAAACTGAA
1 -ATTAAACCATGAGTCAAA-AAATGAA-AATGACCAAGATT-AA-ACCATGAGTTAAAAAATGAA
* * *
3314030 AGTGATCGAG
61 AATGACCAAG
* ** ** * * *
3314040 ATTAAACCACT-AGTCAAAAATTGAAAACAATTGAA-ATTAAATCATGAGTCAAAAAATAAAAAT
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* *
3314103 TA-CAGAA
64 GACCA-AG
* * * * * * * * * *
3314110 ATGAAATCATGAGTCTAAAACTGAAAA-CAACAGGGATTAAACCATGAGTTAGAAAATTAAAA-C
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3314173 AACAGGG
65 ACCA-AG
* * * * ** *** * *
3314180 ATTAAACCATGTGTTAGAAAATGAAGACAACGGGGATTAAACCATGAGTCAAAGAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAA-AAATGAAAATG
3314245 ACC-AG
65 ACCAAG
* ** * * * * ** * * * **
3314250 AATTAAATCACAAGTCAGAAAATGAAAATGACTAGGATTAAATCACAAGTCAGAAAATAAAAACA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3314315 ACCAGG
65 ACCAAG
* * * ** * * * **
3314321 ATTAAACCACGAGTCAGAAAAT-ACAAACGACCTGGATTAAATCATGAGTCAAAAAATAAAAACA
1 ATTAAACCATGAGTCAAAAAATGA-AAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
***
3314385 ACTGGG
65 ACCAAG
* * * ** * * * **
3314391 ATTAAACCATGGGTTAGAAAATGAAAATGACTGAGATTAAACTATGGGTTAGAAAATGAAAACCA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3314456 CCGAG
66 CCAAG
* * * * * * *
3314461 ATTAAATCATGAGTCAAAAAATAAAAATGATC-AGTATTAAATCA-GAAGTCAGAGAAATAAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATG-AGTTA-AAAAATGAAAA
* *
3314524 TGATCAAA
63 TGACCAAG
* * * * * *
3314532 ATTAAATCATGAGTCAGAAAATGAAAATGA-TAGGATTAAACCACGAGTCAGGAAACGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT----TAA--AAAATG-
* * *
3314596 TAACAAAAATTATCAAA
59 -----AAAATGACCAAG
** ** * * * *
3314613 ATTAAATTACAATTCAAAAAATGAAAATGA--AA-ATGAAA-AATGAGTCAAAAAATGAAATTAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG--A--AA
*
3314674 ATGACGAA-
62 ATGACCAAG
* * * * * *
3314682 ATTAAAGCATGAGTCAAAAAATGAAAATGACC-AGAATTAAAGCACA-AAGTCAGAACATGTAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAA-C-CATGAGTTAAAAAATGAAAA
3314745 --A-CAATGGG
63 TGACCAA---G
** * * * * * *
3314753 ATTAAATTATAAGTCAAAAAGTGAAAATGATCGAGATTAAACCATAAGTCAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3314818 CTGGCAAA
66 C---CAAG
* ** * * * * * *
3314826 ATTAAACAACAAGTCAAAAAATGAAAATGATCGACATTTATCACA--AGTCAAAAAA--ATAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAAC-CATGAGTTAAAAAATGA-AAAT
*
3314887 GATCGAA-
64 GA-CCAAG
* * * * ** * * * *
3314894 ATCAAATCATGAGTCAAACAATGAAAAAGACTTAGGTTAAACCACT-AGTCAAAACACGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAATG
3314958 ACCATA-
65 ACCA-AG
* * ** *
3314964 ATTAAATCATGAGTCAAAAAAT-AACAATGACCAA-ATTAAATCACAAGTCT-AAAACTGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAA-AATGACCAAGATTAAACCATGAGT-TAAAAAATGAAAAT
* *
3315026 GACTAGG
64 GACCAAG
* * * * * *
3315033 ATTAAACC-TCAAGTTAGAAAATGAAAAAGACCGAGATAAAACCACT-AGTTAAAAAATGAAAAA
1 ATTAAACCAT-GAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATG-AAAA
** * *
3315096 CAATCGAG
63 TGACCAAG
* * * *
3315104 ATTAAACCATGAGTCAGAAAATG--AA-GACAAAGGGAATTAAACCACGACTTAAAGAAAT-AAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA--G-ATTAAACCATGAGTTAAA-AAATGAAA
*
3315165 CATGA-CTAG
62 -ATGACCAAG
* ** * * *** * * *
3315174 AATTAAATCACAAGTCAGAAAATGAAAACGA-TGGGAATTAAACCATGAGTTAGAAATTGAAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
* *
3315238 GATCAGG
64 GACCAAG
*** * * * *
3315245 ATTAAATTGTGAGTCAAAAAAT-AGAAACGA-CTAGAATTAAACCATGAGTCAAAAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGA-AAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
*
3315308 GACC-CG
64 GACCAAG
* * * * * * *
3315314 AATTAAATCATGAGTCAGAAAATGAAAAGGA-CAAGGATTAAACCAAGGGTCAGAAAATGAAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGTTAAAAAATGAAAAT
* **
3315378 GATCGGG
64 GACCAAG
* ** * **
3315385 ATTAAACCATGGGTCAAAAAATGAAAATGATTGAA-ATTAAACCCCGAGTCAGGAAACAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAA--CC-A-TGA-GTTA-AAAAATG
* **
3315449 ATAATGAAAATTATCAG
59 AAAATG---ACCA--AG
** * * * ** * *
3315466 AATTAAATTATGGGTTAGAAAATGAAAATGAAGAGGATTAAATGC-T-AGTTAAAAAATGAAAA-
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAA-CCATGAGTTAAAAAATGAAAAT
* * *
3315528 CAACTAG
64 GACCAAG
** * ** *** * * * * *
3315535 AATTAAGGCATAAGTCAGAAAAAAAAAAATGACTGGGACTAAACCTTGAGTGAGAAAATGAAAAC
1 -ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* *
3315600 CACCAGG
64 GACCAAG
* * * *** * ** ** * *
3315607 ATTAAACCATGATTTAGAAAATGAAAGCAATCGGGATTAAATGATGAGTCAGAAAATGAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-AAAATG
****
3315672 ATTGGG
65 ACCAAG
* * * ** * * * ** *
3315678 ATTATACTACGAGTCAAAAAATGAAAACAATCGAGATTAAATCACAAGTTAAAAAATAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3315743 -CAGG
66 CCAAG
* * * * * * *** *
3315747 A-TAAAACAGTGCA-TCTAAAAATGAAAAAGA-CAGGGATTAAATCACGA-ACCAGAAATGTAAA
1 ATTAAACCA-TG-AGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATG-AAA
**
3315808 AT-AATAATG
62 ATGACCAA-G
** * * * ** *
3315817 ATTAAACCACAAGTCAACAAGTGAAAATGATCAAGATTAAACCACAAGTTAGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3315882 CC-AG
66 CCAAG
* * * * ** *
3315886 AATTAAACAACGAGTCAAAAAATGAAAATGACC-GGCATTAAATCACAAGTCAAAGAAAT-AAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAA-AAATGAAA-
**
3315949 ATGA-CTGG
62 ATGACCAAG
* * ** * * * *
3315957 AATCAAATCACAAGTCATAAAATGAAAATGACCAGGATTAAACCACT-AGTCAAAAAATGAAAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAAT
*
3316021 GATCGAA-
64 GA-CCAAG
* * * * * * **
3316028 ATTAAATCATGAGTCAAAAAATAAAAATGACCAAAATTAAATCACGAGTCT-AAAACTGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-TAAAAAATGAAAATG
3316092 ACCAAG
65 ACCAAG
* * * ** *
3316098 ATTAAACCACGAGTCAAAAAATTAAAACT-A-CAAGGACTAAACC-TCGAGCCAGAAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACCAA-GATTAAACCAT-GAGTTAAAAAATGAAAA
* *
3316160 TGATCGAG
63 TGACCAAG
* * * * * * ** ** * * *
3316168 ATGAAACCATCAGTCAAAAAATGAAAAACGATCGATATTAAACCACAAGCCAGAAAATGAAGATA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
***
3316233 ATGGAG
65 ACCAAG
* * * * * * *
3316239 ATTAAACCATGAGTCAGAGAAGTAAAAATGAACCAAAATTAAATCACGAGTTAGAAAATGAAAAT
1 ATTAAACCATGAGTCA-AAAAATGAAAATG-ACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
**
3316304 GATGGAA-
64 GA-CCAAG
** * ** * * * *
3316311 ATTAAACCATG-GTCAAAAAATGAAAACAACCAAGATTAAATCACAAGTCAAAAAATAAAAAAGG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3316375 CTAGG
66 CCAAG
* * * * ** * *
3316380 ATTAAACCATAAGTCAAAAAATGAAAAAGATCAAGATGAAACCACCAATCAAAAAATGAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-AAAATG
* *
3316445 ATCGAG
65 ACCAAG
** *
3316451 ATTAAACCACAAGTCAAAAAATGAAAAT-AACAAGGATTAAACCATGAGTTAGAGAAATAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGTT-----AA-AAAATG
** **
3316515 AAAATGGTCGGG
59 AAAATGACCAAG
* * * * * ** * * * ** * * ** *
3316527 ACTAAACCCTGATTGAGAAAATGAAAACCACTATGATTAAATCACAAGTTAGAAAACGAAAGCGT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
****
3316592 TTGGG
66 CCAAG
** * * * ** * ** * **** *
3316597 ATTAAATGACGAGTTAGAAAATGAAAAATGA-TGAG-TCAAAAAATGAAAATTATCGGCATTAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATG--AGTTA-AAAAATGAAA
* *
3316660 TCACGAGTCAAAG
62 --ATGA--CCAAG
* * * * * ** *
3316673 AAATTAAA--ATGA--C-CAAAATCAAATCACGAGTCAAAAAATTAAAATGACTGGATTAAACCA
1 --ATTAAACCATGAGTCAAAAAATGAAA--ATGA--C-CAAGATT-AAACCA-T-GAGT------
*
3316733 CTAGTGAAAAATGAAAATGATC-AG
50 -TA---AAAAATGAAAATGACCAAG
** * * * * * * *
3316757 AATTAAATTA-CAGTCAGAAAATAAAAATGATCGAA-ATTAAATCATGAGTCTCTAAAACTG-AA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGT-T-AAAAAATGAAA
* *
3316819 ATGACTACG
62 ATGACCAAG
* * * * *
3316828 ATTAAACCATGAGTCAGAAAATTAAAATGA-CAGGGATT-AACCATGAGTTAGAAATTGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3316891 ATCGAG
65 ACCAAG
** ** * * * ** * * * * *
3316897 AAAAAACCACCAGT-TAAGAATGAAAATGATCGGGATTAAATCACGAGTTAGAAAATGAAGA-CA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3316960 ACATGG
66 CCA-AG
* * * * * * *
3316966 ATTAAACCATGAGTCAGAGAAGTAAAAAT-AACAATAATTAAATCATGAGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAA-GATTAAACCATGAGTTAAAAAATGAAAAT
***
3317030 GA-TGGG
64 GACCAAG
* * * * * * * *
3317036 AATTAAACCATGAGTTAGAAAATAAAAATGACCAGGATTAAATCATGAGTTAGAAAATAAAAACG
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3317101 ACTAGG
65 ACCAAG
* * * * * * *
3317107 ATTAAACCACT-AGTCAGAAAATAAAAATGACCCAGATAAAATCACGAGTTAGAAAATGAAAATG
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
**
3317171 GTCAAG
65 ACCAAG
* * * * * * * * *
3317177 ATTAAACCATGGGTCAGAAAACGATAATGACCGAGATTAAACTATGGGTTAGAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* **
3317242 TCGTG
66 CCAAG
* * * * *** * ** * * *
3317247 ATTAAATCATGAGTTAGAAAATGAAAACGA-TTGGTATTAAATCACAAATTAGAGAAATTAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTA-AAAAATGAAAAT
* *
3317311 GATCAAA
64 GACCAAG
* * * * * * *
3317318 ATTAAATCAGGAGTCCAAAAA-CAAAA-G-CAATTGAGATTAAATCACGAGTCAAGAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA---AGATTAAA-C-C-A-T---G-AGT-TAAA
* * *
3317380 CGATAATGAAAATTACCTAA
54 --A-AATGAAAATGACCAAG
** * * * * * *
3317400 ATTAAATTACGAGTCAGAAAATGAAAATGACTAGGATTAAA--ATGCAAATGAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATG--AGTTAAAAAATGAAAAT
*
3317463 GACCAAA
64 GACCAAG
* * * ** * * *
3317470 ATTAAATCACGAGTCAAAAAAAGAAAATGGTCGAG-TCTAAACCGTGA-TTGAGAAAAT-AGAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGAT-TAAACCATGAGTT-AAAAAATGA-AAA
** * *
3317532 CCACTAGG
63 TGACCAAG
* ** ** * ** ** *
3317540 ATTAAATCACAAGTCAAAAAATGAAAGCGATCGGGATTAAATGATGAGTTAGAAAATGAAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG--AAA--
* * *
3317605 ATAGTCAAAA
62 AT-GACCAAG
* * ** * ** * * * * * **
3317615 AATAAA-AATGACCAG-CATTAAATCACGA-GTCAAAGATATAAAAACTACTAGAATCAAATCAT
1 ATTAAACCATG---AGTCAAAAAATGAAAATGACCAAGAT-T--AAACCA-T-GAGTTAAAAAAT
* * * *
3317677 G--AGTCA-AAAA
58 GAAAATGACCAAG
* * * * ** ** * ***
3317687 ATTAAAATGACCAGGA-TTAAACCACTAGCCAACAAACAAAAATGACTGGAATTAAATCATGAGT
1 ATT--AA--ACCATGAGTCAAA-AAAT-G--AA-AATGACCAA-GA-T-TAA-ACCA---TGAGT
* * * *
3317751 CAGAAAATAAAAATGACCAAA
50 TAAAAAATGAAAATGACCAAG
* * * * * * * * * *
3317772 ATTAAATCATGCA-CCTAAAACTAAAAATGACCAGGATTAAACCACGAGTCAAAAAATTAAAACG
1 ATTAAACCATG-AGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3317836 A-CAGGG
65 ACCA-AG
* * * ** * * * *
3317842 ATTAAACCATGAGTCAAAAAATGAAAACGACCAAAATGAAACCACCAGTCAAAAACTAAAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAAT-GAAAATG
* *
3317907 ATC-GG
65 ACCAAG
* * * ** *** *
3317912 ATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAA-CATGAGTTCAAAGAAATAAAAGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTT-AAA-AAATGAAA-A
3317976 TGACC-AG
63 TGACCAAG
* * ** * * *
3317983 AATGT-AATCATGAGTGAAAAAATGAAACAATG--GGA-ATTAAACTACGAGTCAAAAAA-GAAA
1 -AT-TAAACCATGAGTCAAAAAATG-AA-AATGACCAAGATTAAACCATGAGTTAAAAAATGAAA
** * *
3318043 ACAATCAGG
62 ATGACCAAG
* * * * * * * *
3318052 CTTAAATCATGAGTCAGAAAAT-AGAAATGACTAGGGTTCAACCATGAGTTAGAAATAA-AAAAC
1 ATTAAACCATGAGTCAAAAAATGA-AAATGACCAAGATTAAACCATGAGTTA-AAA-AATGAAA-
** ***
3318115 AAAACTTGG
62 ATGACCAAG
* * * * * * * * *
3318124 ATGGAATCC-TAAGTCAGAAAAT-AAAA-GACCAGGATTTAAA-CTTTAG-TCAGAAATGAAAAT
1 AT-TAAACCATGAGTCAAAAAATGAAAATGACCAAGA-TTAAACCATGAGTTAAAAAATGAAAAT
****
3318184 GATTGGG
64 GACCAAG
* * * * * * *
3318191 ATTAAA-CATG-GTTAGAAAATGAAAATAACCAAGATTAAATCACGAG-TCATAAATGAAAA--A
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3318251 -CAATCGG
66 CCAA---G
* * * * * * * * * *
3318258 TATTAATCACA--AGTCAAAGAATAAAAATGATCAAAATTAAATCACGAGTCAAAATATGAAAAC
1 -ATTAAAC-CATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* * *
3318321 AATCGAG
64 GACCAAG
* * * * * ** ** *
3318328 ACTAAACCATGATTCAGGAAATGAAAATGATAATGAAAATTACAGGAATTAAATTACAAGTCAAA
1 ATTAAACCATGAGTC----AA--AAAATGAAAATG---A--CCAAG-ATTAAACCATGAGTTAAA
* * **
3318393 AAATAAAAATGATCGGG
54 AAATGAAAATGACCAAG
*** * ** * *
3318410 ATTAAAATGTGAGT-TAAAAATGAAAACT-ATTGAA-ATTTAAA-CACGAGTCAAAAAAATGAAA
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGA-CCAAGA-TTAAACCATGAGT-TAAAAAATGAAA
*
3318471 ATGACCAGG
62 ATGACCAAG
* * * * * * * * * * * *
3318480 ACTAAACCCTTAGTGAGAAAATGAAAACT-A-CTAGTGTTAAAGCATAAGTCAGAAAATGAAAGT
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
* **
3318543 GATCGGG
64 GACCAAG
* * * ** *** *
3318550 ATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAACCATGAGTCAAAGAAAT-AAAGAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAA-AAATGAAA-AT
3318614 GACC-AG
64 GACCAAG
* * * **** * * * *
3318620 AATTAAATCATGAGTGAAAAAATGAAAA-CAATGGGAATTAAACTACGAGTCAAAAAATGAAAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
* * *
3318684 AATCAGG
64 GACCAAG
* * * * * * **
3318691 ATTAAATCATGAGTCAGAAAAT-AGAAATGACTAGGATTAAACCATGAGTTAGAAAATAAAAACA
1 ATTAAACCATGAGTCAAAAAATGA-AAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
***
3318755 ACTTGG
65 ACCAAG
* * * * * * * * * * *
3318761 ATGGAATCC-TAAGTCAGAAAATAAAAACGACCAGGATTAAACCTTTAGTCAGAAAATGAAAATG
1 AT-TAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
****
3318825 ATTGGG
65 ACCAAG
* * * ** * * * * **
3318831 ATTAAA-CATGGGTTAGAAAATGAAAACAACCAAGATTAAATCACGAGTCATAAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3318895 TC-GG
66 CCAAG
* ** * * * * * * * *
3318899 TATTAAATCACAAGTCAAAGAAATAAAAATGATCAAAATTAAATCACGAGTCAAAATATGAAAAC
1 -ATTAAACCATGAGTCAAA-AAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* * *
3318964 AATCGAG
64 GACCAAG
* * * * * ** **
3318971 ACTAAACCATGATTCAGGAAATGAAAATGATAATGAAAATTACAGGAATTAAATTACAAGTTAAA
1 ATTAAACCATGAGTC----AA--AAAATGAAAATG---A--CCAAG-ATTAAACCATGAGTTAAA
* * **
3319036 AAATAAAAATGATCGGG
54 AAATGAAAATGACCAAG
*** * ** * *
3319053 ATTAAAATGTGAGT-TAAAAATGAAAACT-ATTGAA-ATTTAAA-CACGAGTCAAAAAAATGAAA
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGA-CCAAGA-TTAAACCATGAGT-TAAAAAATGAAA
*
3319114 ATGACCAGG
62 ATGACCAAG
* * * * * * * * * * * *
3319123 ACTAAACCCTTAGTGAGAAAATGAAAACT-A-CTAGTGTTAAAGCATAAGTCAGAAAATGAAAGT
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
* **
3319186 GATCGGG
64 GACCAAG
* * * ** *** *
3319193 ATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAACCATGAGTCAAAGAAAT-AAAGAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAA-AAATGAAA-AT
3319257 GACC-AG
64 GACCAAG
* * * **** * * * *
3319263 AATTAAATCATGAGTGAAAAAATGAAAA-CAATGGGAATTAAACTACGAGTCAAAAAATGAAAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
* * *
3319327 AATCAGG
64 GACCAAG
* * * * * **
3319334 ATTAAATCATGAGTCAGAAAAT-AGAAATGACTAGGATTAAACCATGAGTTAGAAAAT-AAAACA
1 ATTAAACCATGAGTCAAAAAATGA-AAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
***
3319397 ACTTGG
65 ACCAAG
* * * * * * * * * * *
3319403 ATGGAATCC-TAAGTCAGAAAATAAAAACGACCAGGATTAAACCTTTAGTCAGAAAATGAAAATG
1 AT-TAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
****
3319467 ATTGGG
65 ACCAAG
* * * ** * * * * **
3319473 ATTAAA-CATGGGTTAGAAAATGAAAACAACCAAGATTAAATCACGAGTCATAAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3319537 TC-GG
66 CCAAG
* ** * * * * * * * *
3319541 TATTAAATCACAAGTCAAAGAAATAAAAATGATCAAAATTAAATCACGAGTCAAAATATGAAAAC
1 -ATTAAACCATGAGTCAAA-AAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* * *
3319606 AATCGAG
64 GACCAAG
* * * * * ** ** *
3319613 ACTAAACCATGATTCAGGAAATGAAAATGATAATGAAAATTACAGGAATTAAATTACAAGTCAAA
1 ATTAAACCATGAGTC----AA--AAAATGAAAATG---A--CCAAG-ATTAAACCATGAGTTAAA
* * **
3319678 AAATAAAAATGATCGGG
54 AAATGAAAATGACCAAG
*** * ** * *
3319695 ATTAAAATGTGAGT-TAAAAATGAAAACT-ATTGAA-ATTTAAA-CACGAGTCAAAAAAATGAAA
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGA-CCAAGA-TTAAACCATGAGT-TAAAAAATGAAA
*
3319756 ATGACCAGG
62 ATGACCAAG
* * * * * * * * * * *
3319765 ACTAAACCCTTAGTGAGAAAATGAAAACT-A-CTAGTGTTAAACCATAAGTCAGAAAATGAAAGT
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
****
3319828 GATTGGG
64 GACCAAG
** * * * * * *
3319835 ATTAAAAGATGAGTCAGAAAATGAAAAATGACCGAGATTATACCACGAGTCAAAAAATGAAAATA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* **
3319900 ATCGTG
65 ACCAAG
** * * * * *
3319906 ATTAAATTATGAGTCAAAAAATAAAAATGA-CAGGGATTAAACAATGCA-TCAAAAAATGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATG-AGTTAAAAAATGAAAAT
*
3319969 GA-CAGGG
64 GACCA-AG
* * * * ** * **
3319976 ATTAAAGCATGAGTCAAAAAATGTAAAA-CAACAGGGATTAAACCACAAGTCAAAATGTGAAAAT
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAAT
3320040 GACCAAG
64 GACCAAG
** * * *
3320047 ATTAAACCATGAGTCAAAAAATGAAAACAACCATA-ATTAAACAATAAGTCAAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGT-TAAAAAATGAAAAT
**
3320111 GA-CTTG
64 GACCAAG
* ** * * * * * * *
3320117 CATTAAATCACAAGTCAAAAAAATAAAAACGACCAAAATCAAATCACGAGTCAAAAAATGAAAAT
1 -ATTAAACCATGAGTC-AAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
***
3320182 GA-TGGG
64 GACCAAG
** * ** * * **
3320188 AATTAAACCATGAGTCAAAAAATGAAAACAATCGGGATTAAATCATGAG-TCAAAAATGAAAACA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3320252 ACTAAG
65 ACCAAG
** * * * * * * *
3320258 ATTAAACCACAAGTTAAAAAATAAAAATGACTCGA-ATTAAAGCATGAGTCAAAAAATGACAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGAC-CAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3320322 ACCAGG
65 ACCAAG
* * * * **** * * **
3320328 ATTAAACCATGGGTC-AGAAATAAAAATGACTAAGATTAAATTGGGGGTTAGAAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3320392 TCGAG
66 CCAAG
* * * ** * * *
3320397 ATTAAATCATGAGTCAAAAAATGAAAATGATC-AGTATTAAATCACAAGTCAGAGAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTA-AAAAATGAAAAT
*** *
3320461 GATTGAC
64 GACCAAG
* * * * * * *
3320468 ATTAAATCACGAGTCAGAAAACGAAAATAATCAAGATTAAACCACAAGTCAAGAATTGAAAACTA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAA-C-C-A-T---GAGTT--AAA--A
* ** *
3320533 TAATGAAAATTACTGAA
55 -AATGAAAATGACCAAG
** *** * *
3320550 ATTAAATTATGAGTCAAAAAATGAAAATGACTGGGATTAAAACATGAGTT-AAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3320614 CCGAA-
66 CC-AAG
* ** * ***** * * ***
3320619 ATTAAAGCACAAGTCAAAAAATGATAATGTTTGGGATTCAACCACT-AGTCAAAAAGCAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAATG
****
3320683 -GTTGG
65 ACCAAG
* * * * * *
3320688 AATTAAATCATGAGTCAGAAAATAAAAAATGATCGAA-ATTAAATCATGAGTCT-AAAATTGAAA
1 -ATTAAACCATGAGTCAAAAAAT-GAAAATGA-CCAAGATTAAACCATGAGT-TAAAAAATGAAA
* * *
3320751 ACGATCTAG
62 ATGACCAAG
* * * * * * *
3320760 ATTAAACCACGAGTC-AGAAATTAAAATGA-CAGGGATTAAACCACGAGTCAAAAATTG---ATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAATG
3320820 ---AAG
65 ACCAAG
* ** * * * * *
3320823 ATGAAACCACCAGTCAGAAAATGAAAAAAGATCAAGATTAAACC-TCGAGTTAGAAAATGAAGA-
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCAT-GAGTTAAAAAATGAAAAT
* * *
3320886 CAACAGGG
64 GACCA-AG
* * * * * *
3320894 ATTAAACCATGAGTCAGAGACATAAAAATGATC-AGAATTAAATCATGAGTTAGAAAATGAAAAT
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
***
3320958 GA-TGGG
64 GACCAAG
* * * * * * * *
3320964 AATTAAACCATGAGTTAGAAAATGAAACTGATCTAGATTAAATCATGAG-TAAGAAAATAAAAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAA-AAAATGAAAAT
* *
3321028 GACTAGG
64 GACCAAG
* * * * **
3321035 ATTAAACCATGAGTCAGAAAA--AAAATGACCCAA-ATTAAATCACGAGTCAAAAAATGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAATG
**
3321097 ACCGGG
65 ACCAAG
* * ** * * * * * * *
3321103 ATTAAACCATGGGCCAAAAAAT-AAAAACAACAGAGATTAAATCACGAGTCAGAAAATGAAGACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAATG
***
3321167 A-TTGG
65 ACCAAG
* * * * * * ** *
3321172 AATTAAACTATAAGTCAAAGAAA--AAAATGATCAAAATTAAATCATGAGTCAAAAAACAAAAAA
1 -ATTAAACCATGAGTCAAA-AAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
** *
3321235 GTTCGAG
64 GACCAAG
* * * ** * *
3321242 ATTAAACCATGAGTTAGGAAATGATAACGATAATGAAAATTATC-AGAATTAAATTATAAGTCAA
1 ATTAAACCAT--G--A-G---TCA-AA--A-AATGAAAATGACCAAG-ATTAAACCATGAGTTAA
*
3321306 AAAATGAAAATGACCGAG
53 AAAATGAAAATGACCAAG
** * *** ** * * * **
3321324 ATTAAAATACGAGTCAAAAAATGAAAATGACTGGGACCAAACCCTGAGTGAGAAAATGAAAACCA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3321389 CCAAG
66 CCAAG
* * ** * * * *
3321394 ATTAAACCACGAGTCAGAAAATGAAAGCGATCAAGATTAAACAACT-AGTCAAAAAATAAAAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAAT--GAAAA
*
3321458 TGATCGAA-
63 TGA-CCAAG
* ** * * ** * *
3321466 ATTATACCACAAATCAAAAAATGAAAACGACTGAGATTAAATCACT-AGTCAAAAAAT-AAAA-G
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAATG
** *
3321528 TAATAGGG
65 -ACCA-AG
* * * * ** *
3321536 ATTAAACAATGCA-TCGAAAAAA-GAAAACGACAAAGATTAAAGCACAAGTCAAAAAATGTAAAA
1 ATTAAACCATG-AGTC-AAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-AAAA
** ***
3321599 CAACGGGG
63 TGACCAAG
* * * * *
3321607 ATTAAACCATAAGTCAAAAAGTGAAAATGATCGAGATTAAACCATGAGTCAAAAAATGAAAAT-A
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
***
3321671 ATTAG
66 CCAAG
** * * * * * *
3321676 AATTAAATGAGGAGTTAAAAAATGGAAATGA-CAAGCATTAAATCATGAGTCAAAAAAATAAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGT-TAAAAAATGAAAA
3321740 TGACC-AG
63 TGACCAAG
* ** * * * * **** * *
3321747 AATCAAATGACGAATTAGAAAATGAAAATGATTGGGATTAAACCACT-AGTCAAAAAATGAAAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAAT
* *
3321811 AATCGAA-
64 GA-CCAAG
* * * * ** * *
3321818 ATTAAATCC-CGAGTCAGAAAAT-AAGAATGACCAAAATTAAATCACAAGTCT-CAAACTGAAAA
1 ATTAAA-CCATGAGTCAAAAAATGAA-AATGACCAAGATTAAACCATGAGT-TAAAAAATGAAAA
* * *
3321880 CGAGCGAG
63 TGACCAAG
* * * * * * * *
3321888 ATTAAAACATAAGTCAGAAAATTAAAATGA--AAGGGATTAAATCATGGGTTAGAAAATGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA--GATTAAACCATGAGTTAAAAAATGAAAAT
3321951 GACCAAG
64 GACCAAG
* * * ** * * * * * *
3321958 ATGAAACC-TCTAGTCAGAAAATGAAAAACAATCAGGATTAAACCAAGAGTCAGAAAATGAAAAC
1 ATTAAACCAT-GAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* ***
3322022 AACGGGG
64 GACCAAG
* * * * * * *
3322029 ATTAAACCACGAGTCAAAGAAATGAAAATTA-CTAGAATTAAATCACG-GTCAGAAAATGAAAAT
1 ATTAAACCATGAGTCAAA-AAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
**
3322092 GATGGAA-
64 GA-CCAAG
* * * * * * *
3322099 ATTAAACCATGAGTCAAAAAATGAAAAACGATCATGATTAAATCATGAATCAAAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
3322164 ACCAAG
65 ACCAAG
* * * * * * * * * *
3322170 ATTAAACCACGGGTCAAAAAGTAAAAACGATCGA-ATTAAAGCATGAGTCAAAAAATGAAAATAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3322234 TCGGGATTAA
66 -C--CA--AG
* * * * * * *
3322244 ATTAAATCGTGAGTCAAAAAATGAAAATGACTAGGATTAAACCATGGGTCAAAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3322309 TCAAG
66 CCAAG
* * ** * * * ** ** * *
3322314 ATTAAATCACGAGTCAAAAAATGAAAACAATCGATATTAAGTCACAAGTCAAAGAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAA-AAATGAAAATG
* *
3322379 ATCAAA
65 ACCAAG
* ** * * *
3322385 ATTAAATCACAAGTCAAAAAATGAAAATGATCATGATTAAACAATGAGTCAAGAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-------T--AAA--A
* * *
3322450 TAATGAAAATTATCAAA
55 -AATGAAAATGACCAAG
** * * **
3322467 ATTAAATTATAAGTCAAAAAATAAAAATGACCGGGATTAAA--ATGCAAGTTAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATG--AGTTAAAAAATGAAAAT
*
3322530 GATCGAA-
64 GA-CCAAG
* * * * * ** * * * * *
3322537 ATTAAAGCACGAGTCAAAAATTGAAAA-CAACTGGTACTAAAACC-TAAGTGAGAAAATGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-A-TTAAACCATGAGTTAAAAAATGAAAAT
*
3322600 CACCAAG
64 GACCAAG
* ** ** * ** * * *
3322607 ATCAAACCACAAGTCAAAAAATGAAAGCGATCGGGATTAAACGACTG-GTCAAAAAATGAAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATG-AAAAT
*
3322671 AACCAAG
64 GACCAAG
* * * * ** * * * * *
3322678 ATTAGACCACGAGTCAAAAAATGAAAACGATCGGGATTAAATCATGGGTCAAAAACTAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3322743 -TAGGG
66 CCA-AG
* * * * * * * *
3322748 ATTAAACAATGTGT-AGGAAAATGGAAATGA-TAGGGATTAAAGCATGAGTAAAAAAATGTAAAA
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATG-AAAA
* **
3322811 -CAATAAGG
63 TGACCAA-G
* ** * ** * ** * *
3322819 ATTAAAACACAAGTTAAAAGGTGAAAATGACCGAGATTAAACCACAAGTCAAAAAATAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3322884 CCAAA
66 CCAAG
** * * * *
3322889 ATTAAATGATGAG-CGAAAAAATGAAAATGA-CTAGCATTAAATCATGAGTCAAAGAAATAAAAA
1 ATTAAACCATGAGTC-AAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAA-AAATGAAAA
***
3322952 TGA-TTGG
63 TGACCAAG
* * ** * * *
3322959 AATCAAATCACAAGTCAAAAAAT-CAAATGACCAGGATTAAACCACT-AG-CAAAAAATGAAAA-
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAAT
* * *
3323020 CAACTAG
64 GACCAAG
* ** * * * * * * *
3323027 AATTAAATCACAAGTCAAAATATAAAAATGACCAAAATTAAATCACGAGTCT-AAAACTAAAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-TAAAAAATGAAAAT
* *
3323091 GATCAGG
64 GACCAAG
* * * *
3323098 ATTAAACCATGAGTCAAAAAATTAAAACGA-CAAGGATTAAACCATGAGTCAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGTTAAAAAATGAAAATG
**
3323162 ACCTTG
65 ACCAAG
* ** * * **** * * * **
3323168 ATGAAACCACCAGTCATAAAATAAAAAATGATTGGGATTAAACCACGAGTCAAAAAATGAAGACA
1 ATTAAACCATGAGTCAAAAAAT-GAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
****
3323233 ATGGGG
65 ACCAAG
* * * * * * *
3323239 ATTAAACTATGAGTCAGAGAAATAAAAATGATC-AGAATTAAATCACGAG-TCAAAAATGAAAAT
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
***
3323302 GA-TGGG
64 GACCAAG
* ** * * * * * *
3323308 AATTAAACCACGAGTCAAAAAATGAAAACAATCGAGATTAAATCACGAGTCAAAAAATAAAAATG
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
3323373 ACCAAG
65 ACCAAG
* * * * * * * * **
3323379 AATTAAGCTACGAGTCAAAAAATAAAAATGACCTAGATTAAATCACGAGTTAGAAAATGAAAACA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3323444 ATCGAG
65 ACCAAG
* ** *** *
3323450 ATTAAATCACAAGTCAAAAAATGAAAATGACTGGGATTAAA--ATGCATGTTAAATAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATG-A-GTTAAAAAATGAAAAT
3323513 GACCGAA-
64 GACC-AAG
* * * * * * * * * **
3323520 ATTAAAGCACT-AGTTAGAAAATGAAAATGACTAGGACTAAACCCTGAGTGAGAAAATGAAAACC
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
3323584 ACCAAG
65 ACCAAG
* * * *** * *** *
3323590 ATTAAGCCACGAGTCAGAAAATGAAAGCAATCAAGATTAAATGGTGAGTTAAAAAATGAAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-AAAATG
***
3323655 ACTGGG
65 ACCAAG
* * * * * * * *
3323661 ATTACACCACGAGTCAGAAAATCAAAATGATCAAGATTAAATCATGA-TCAAAAAATAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3323725 --AAGGG
66 CCAA--G
** * * * ** * * * *
3323730 ATTAAAAAAT-ACGTCGAAATATGAAAA-CAATATGGATTAAAGCACGAGTCAAAAAATGTAAAA
1 ATTAAACCATGA-GTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATG-AAAA
* *
3323793 -CAACAAGG
63 TGACCAA-G
** * ** *
3323801 ATTAAACCACAAGTCAAAAAGTGAAAATGACTGAGATTAAACCATGAGTCAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3323866 TCAAA
66 CCAAG
** * **** * * * **
3323871 ATTAAAAGATGAGTCAAAAAATGAAAA-CAATGGGAATTAAACCACGAGTCAGAAAATGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
3323935 ACCAAG
65 ACCAAG
* * * * *
3323941 ATTAAATCATGAGTCAAAAAATGAAAACGACCAAGATTAAGCCA-CAGGTTAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGA-GTTAAAAAATGAAAATG
3324005 ACCAAG
65 ACCAAG
* * * * * * ** * *
3324011 ATTAAATCAT-A-TCAGAAAATAAAAATG-CTAGGTATTAAATCACAAGTCAAAAAAATAAAAGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGT-TAAAAAATGAAA-A
* *
3324073 TG-CGAAA
63 TGACCAAG
* * ** * * * *
3324080 ATTAAATCATGAGTCAGAAAAAAATGAAAAAGGTCATGATTAAACCACGAGTCAAGAAATAAGAA
1 ATTAAACCATGAGTC---AAAAAATGAAAATGACCAAGATTAAACCATGAGTTAA-AAA-ATG--
* *
3324145 ACAATAATGAAAACATCGAA
59 --AA-AATG---AC--CAAG
** * * * * * * * *
3324165 ATTAAATTA-CAATAAAAAAATGAAAATAATC-GGATTAAA--ATGCAAGTT-AGAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATG--AGTTAAAAAATGAAAAT
**
3324225 GACCTGG
64 GACCAAG
* *** * * * *
3324232 AATTAAAGCTATGAGT-ACAAAAATGAAAATGACTGGGGACTAAACC-TTAGTGAAAACATGAAA
1 -ATTAAA-CCATGAGTCA-AAAAATGAAAATGAC-CAAGATTAAACCATGAGTTAAAAAATGAAA
** *
3324295 ACCACCAGG
62 ATGACCAAG
* * *** * * * *
3324304 GTTAAAACCCACGAGTCAAAAAATTGAAAGCAATCAGGA-TAAACGATGAGTCAAAAAATGAAAA
1 ATT-AAA-CCATGAGTCAAAAAA-TGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-AAA
* *
3324368 CATGACTAGG
62 -ATGACCAAG
* * * * * *
3324378 ATTATACCATGAGTCAAAAAATGAAAAT-A-CACAGGTTAAATCACGAGTCAAAAAATTAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAATG
*
3324441 A-CAGGG
65 ACCA-AG
* * * * **
3324447 AGTAAACAACA-CA-TCAAAAAATGAAAACGA-CAAGAATTAAAGCATGAGTCGAAAAATGTAAA
1 ATTAAAC--CATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATG-AAA
* ****
3324509 ATAATGGGG
62 ATGACCAAG
* * * * **
3324518 ATTAAACCATAAGTCAAAAGGA-GAAAATGACCGAGATTAAACCATAAGTTAGCAAATGAAAACT
1 ATTAAACCATGAGTCAAAA-AATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAA-T
*
3324582 -ACCAAA
64 GACCAAG
** ** * * * *
3324588 ATTAAATGACAAGTTAAAAAATGAAAATGACC-AGCATTAAATCATGAGTCAAAGAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAA-AAATGAAAAT
*
3324652 GA-CTAG
64 GACCAAG
* * * * * * ** *
3324658 AATCAAATCACGAGTTAGAAAATGAAAATGATCGGGATTAAACCACT-AGTCAAAAAATGAAAA-
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAAT
* * *
3324721 CAACTAG
64 GACCAAG
** * ** ** ** * * *
3324728 AATTAAATTATGAGTCAAAAAATAAAAATGACCGAA-ATTAAATTACAAGCCAAAAACTAAAAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACC-AAGATTAAACCATGAGTTAAAAAATGAAAAT
* *
3324792 AACCTAG
64 GACCAAG
* * * * * ** * * *
3324799 ATTAAACTATGAGGCAACAAATTAAAA-CAATAGCGATTAAACCATGAGTCAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3324863 TCCAAC
65 ACCAAG
* * * * * * * * * *
3324869 ATGAAACCACT-AGTTAGAAAATGAAAAACGATCGAGATTAAACCAT-ACATCAGAAAATGAAGA
1 ATTAAACCA-TGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGA-GTTAAAAAATGAAAA
** ****
3324932 CAATGGGG
63 TGACCAAG
* * * * *
3324940 ATTAAACCACGAGTCAAAGAAAT-AAAAGTGACCAAAATTAAATCGTGAGTTAAAAAATTAAAAA
1 ATTAAACCATGAGTCAAA-AAATGAAAA-TGACCAAGATTAAACCATGAGTTAAAAAA-TGAAAA
* ***
3325004 AGA-TGGG
63 TGACCAAG
* * ** * * * * *
3325011 AATTAAACCACGAGTCAGAAAATGAAAAATGACTGAGATTAAATCACGAGTCAAAAAATAAAAAA
1 -ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
3325076 GACCAAG
64 GACCAAG
* * * * * *
3325083 ATTAAACCATGAGTCAGAAAATAAAAATGACCCAGATTAAATC-TCGAGTCAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCAT-GAGTTAAAAAATGAAAATG
*
3325147 ACCAGG
65 ACCAAG
* * * * * ** * * * *
3325153 ATTTAACTATGGGTCAAAAAATAAAAAATGATCGGGATTAAACCATGGGTTAGAAAATTAAAACG
1 ATTAAACCATGAGTCAAAAAAT-GAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3325218 ACCGAG
65 ACCAAG
* * * * * ** * *
3325224 ATTAAATCATAAGTCAAAAAAGTGAAAACGATC-AGTATTAAATCACAAGTTAGAGAAATAAAAA
1 ATTAAACCATGAGTCAAAAAA-TGAAAATGACCAAG-ATTAAACCATGAGTTA-AAAAATGAAAA
*
3325288 TGATCGAA-
63 TGA-CCAAG
* * * * * * *
3325296 ATTAAATCATAAGTCAGAAAATGAAAACGATCGAGATTAAACCATGAGTCAGGAAACGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT--------TAAAA-AA
* *
3325361 TAATGAAATTACCGAA-
57 TGA--AAATGACC-AAG
** * * * *
3325377 ATTAAATTACGAGT-AAGAAAATGAAAATGGCCAGGATTAAA--ATGGAGTTAAAATATGAAAAT
1 ATTAAACCATGAGTCAA-AAAATGAAAATGACCAAGATTAAACCAT-GAGTTAAAAAATGAAAAT
*
3325439 GATCGAA-
64 GA-CCAAG
* * * * * * * * * *
3325446 ATTAAAGCATGAGTTAGAAAATGAAAATGA-GAGGGACTAAACCCT-AATTGAGAAAAT-AAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTT-AAAAAATGAAAAT
*
3325508 CACCAAG
64 GACCAAG
* * * * **** * ** ** * *
3325515 ATTAAACGATGAGTTAGAAAAT-AAAAGCGATTGGGAATAAATGACAAGTCAAAAAATGAAAGAC
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACCAAGATTAAACCATGAGTTAAAAAATGAAA-AT
* ***
3325579 AACTGGG
64 GACCAAG
** * * * * *
3325586 A-TAATACCACAAGTCAAAAAATAAAAATGATCGAGATTAAATCATGAGTTAAAAAATAAAAATG
1 ATTAA-ACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3325650 A-TAGGG
65 ACCA-AG
* * *
3325656 ATTAAACAACAT--GTCAAAAAATGAAATTGA-CAAGGATTAAAGCATAAG-TAAGAAAATGTAA
1 ATTAAAC--CATGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGTTAA-AAAATG-AA
* *
3325717 AA-CAACAAGG
61 AATGACCAA-G
** ** * ** * * **
3325727 ATTAAACCACAAGTCAAAAAGGGAAAATGACCGAGATTAAACCACAAGTCAGAAAACAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3325792 CC-AG
66 CCAAG
* * * * * * *
3325796 AATTAAACGATGAGCCAAAAAATGAATATGACCAACATTAAATCACGAGTCAAAGAAAT-AAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAA-AAATGAAAAT
3325860 GACCGAA-
64 GACC-AAG
* * ** ** * *
3325867 ATCAAATCACAAGTC-AAAAATGAAAATGATTAGGATTAAACCACT-AG-TCAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAATG
**
3325929 A-TTAG
65 ACCAAG
* * * * * * *
3325934 AATTAAATCATGAGTCAGAAAATAAAAATGATCGAA-ATTAAATCATGAGTTTAAAATTGAAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAAT
****
3325998 GATTGGG
64 GACCAAG
* * * ** * * *
3326005 ATTAAACCATAAGTCAAAAAATTAAAACGA-CAAGGATTAAACCACAAATCAAAGAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGTTAAAAAATGAAAATG
* *
3326069 ATCGAG
65 ACCAAG
* * ** * ** ** * * *
3326075 GTGAAACCACCAGTCAAAAAATGAAAATGGATCGGGATTAAACCACAAATCAAAAAATGAAAATA
1 ATTAAACCATGAGTCAAAAAATGAAAAT-GACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
****
3326140 ATGGGG
65 ACCAAG
* * * * * *
3326146 ATTAAACCATAAGTCAGAGAAATAAAAATGACCCAA-CTTAAATCATGAGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCA-AAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAAT
**
3326210 GATGGAA-
64 GA-CCAAG
* * * * * * * * * *
3326217 ATTAAACCATGAGTTAGAAAATGAAAATGACTAGGATTAAATCACGAGCTAGAAAATAAAAAAGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3326282 CCGAG
66 CCAAG
* * * * * * * * **
3326287 ATTATACCATGAGTCAGAAAATAAAAATGACCCAGATTCAATCA-GAATTCAGAAAATGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTT-AAAAAATGAAAATG
***
3326351 ACTGGG
65 ACCAAG
* * * * * * *
3326357 ATTAAACC-T-AGGTTAGAAAATGAAAATGACCAGGATTAAACCATGGGTTAGAAAATAAAAAAG
1 ATTAAACCATGA-GTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
3326420 A-CAGAG
65 ACCA-AG
* * * ** ** * * * *
3326426 ATTAAATCATGAGTTAGAAAATGAAAAAAAATTAGGATTAAACCATGGGTCAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3326491 ACTAGG
65 ACCAAG
* * * * * *
3326497 ATTAAACTATGGGTTAAAAAATGAAAATGATCGC-A-ATTAAATCACGAGTTAGAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-C-CAAGATTAAACCATGAGTTAAAAAATGAAAAT
* *
3326560 GATC-GG
64 GACCAAG
* ** ** * * * *
3326566 TATTAAATCACAAG-CTAGGGAAAT-AAAATGATCAAAATTAAATCACGAGTTAAAAAATGAAAA
1 -ATTAAACCATGAGTC-A-AAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAA
**
3326629 TGATTAAG
63 TGACCAAG
** * * * ** *
3326637 ATTAAACCACAAGTCAGAAAATGAAAACGA-TAATGAAAATTATCAGAATAAATTACGAGTTAGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-G---A-T-T-A-AA-CCA-T--GAGTTAAA
***
3326701 AAATGAAAATGACTGGG
54 AAATGAAAATGACCAAG
** * * * * * *
3326718 ATTAAA--ATGCGAGTTTAAAAATGAAAATGACCAAAATTAAAGCACGAGTCAGAAAATGAAAAC
1 ATTAAACCAT--GAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
***
3326781 GACTGGG
64 GACCAAG
* * * * * ** * * * *
3326788 ACTAAACCCTGAATGAGAAAATGAAAACCACC-AGTATCAATCCATGAGTCAAAAAATGAAAGTG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
* *
3326852 ATCGAG
65 ACCAAG
* * * * **** * * *
3326858 ATTGAACAATGAGCCAGAAAATGAAAAATGATTGGGATTATACCATGAGTCAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
***
3326923 ATTGAG
65 ACCAAG
* * * *
3326929 ATTAAATCATGAGTCAAAAAAT-ACAAATGA-TAAGGATTAAACAACAT--G-TCAGAAATGAAA
1 ATTAAACCATGAGTCAAAAAATGA-AAATGACCAA-GATTAAAC--CATGAGTTAAAAAATGAAA
3326989 ATGA-CAAGG
62 ATGACCAA-G
** * ** * * * *
3326998 ATTAAAGTATGAGTCAAAAAATGTAAAA-CAATAAGGATTAAA--TTGCAAGTCAAAAACTAAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAA-GATTAAACCATG--AGTTAAAAAATGAAA
* *
3327060 ATGAACGAG
62 ATGACCAAG
* * ** * * * *
3327069 ATTAAACCACGAGTCAGAAAATGAAAACAACCAAAATTAAACAACGAGTCAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3327134 CC-GG
66 CCAAG
* * * * * ** * * * *
3327138 TGTTAAATCATGAGTCAAAGAAATAAAAATGACCAAAATCAAATTATAAGTCAGATAATGAAAAT
1 -ATTAAACCATGAGTCAAA-AAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* *
3327203 GATCGAG
64 GACCAAG
* * ** * ** *
3327210 ATTAAATCACT-ACTCAAAAAACAAAAATGA-CTAGAATTAAATTATGAGTTAGAAAAT-ATAAA
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGA-AAA
*
3327272 TGACCAAA
63 TGACCAAG
* ** * * *** * * * *
3327280 ATTAAATCATGAGTGTAAAACTAAAAATGATTGAGATTAAACCACGAGTCAAAAAATTAAAA-CA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3327344 ACAGGG
66 CCA-AG
* * * * * *
3327350 ATTAAACCATGAGTC-AAAAATGAAAACGGCCAAGATGAAACCGCT-ACTTAGAAAATGAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACC-ATGAGTTAAAAAATG-AAAAT
* *
3327413 GATCAGG
64 GACCAAG
* * * * * *
3327420 ACTAAACCACGAGTCAAAAAATG--AA-GACCACAGGGATTAAACCATTAGTCAGAGAAATAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-A--GATTAAACCATGAGTTA-AAAAATGAAA
*
3327482 ATGA-CTAG
62 ATGACCAAG
* * ** ** *
3327490 AATTAAATCATGAGTCAGAAAATGAAAACAATGGAA-ATTAAACCATGAGTCAAAAAATGAAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAAT
*
3327554 GACCATG
64 GACCAAG
* * * * ** *
3327561 ATTAAATCGCA--AGTCAAAAAATAAAAAGGAACAGGATTAAACCACAAGTCAAAAAAT--AAAT
1 ATTAAA-C-CATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
*
3327622 GGCCTAA-
64 GACC-AAG
* * * * ** * * * *
3327629 ATTAAATCACGAGTCATAAAATGAAAACGACTGAGATT-AATCATAAG-TCAAAAATAAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3327692 -TAAGG
66 CCAA-G
* * * * * * * * *
3327697 ATTAAACAACGCGTC-AAAAATGGAAAATTA-TAGAAATTAAAGCACGAGTCAAAAAATGTAAAA
1 ATTAAACCATGAGTCAAAAAAT-GAAAATGACCA-AGATTAAACCATGAGTTAAAAAATG-AAAA
****
3327760 T-AATGGG
63 TGACCAAG
* * * * *
3327767 GTTAAACACA--AGTCAAAAAGTGAAAATGACCGAGATTAAACCATGAGTCAAAAAATCAAAATG
1 ATTAAAC-CATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3327830 ATCAAA
65 ACCAAG
* ** * * * *
3327836 ATTAAACAATGAGTCAAAAAATGAAAATGA-TTAGCATTAAATCACGAGTCAAAAAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGT-TAAAAAATGAAAAT
3327900 GACC-AG
64 GACCAAG
* * * * * ** *
3327906 AATCAAATCATGAGTCGAAAAATG-AAATAGATCAAGATTAAACAATCGAAACTAAATCACGAGT
1 -ATTAAACCATGAGTCAAAAAATGAAAAT-GACCAAGATTAAACCAT-G-AGTTAAA--A--AAT
*
3327970 CAGAAAAAAAATGACCAAA
58 --G----AAAATGACCAAG
* * * * * * * * *
3327989 ATTAAATCATGAATCTAAAACTGAAAATGATCGAGATTAAACCACGAGTTAGAGAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
**
3328054 CCGTG
66 CCAAG
* ** **** * * * **
3328059 ATGAAACCACCAGTCAAAAAATGAAAAATGATTGGGATTAAACCACGAGTCAAAAAATGAAGACA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
****
3328124 ATGGGG
65 ACCAAG
** * * * * *
3328130 ATTAAACCATGAGTCAAAAAAAT-AAGAATGATTGAA-ATTAAATCACGAGTCAGAAAATAAAAA
1 ATTAAACCATGAGTC-AAAAAATGAA-AATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAA
* ***
3328193 TTA-TGGG
63 TGACCAAG
** * * * * *
3328200 AATTAAACCACAAGTCAAAAAATGAAAATGATCGAGATTAAATCATGAGTCAAAAAATGAAAATA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3328265 ACTGAA-
65 AC-CAAG
* * * * * *
3328271 ATTAAACCACGAGTCAAAAAATAAAAATGACCAGGATTAAATCATGAGTCATAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3328336 CCGAG
66 CCAAG
* * * * **** * *
3328341 ATTAAACTATGGGTCAGAAAATAAAAATGATTGGGATT-AACCATGGGTTAGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3328405 TCGAG
66 CCAAG
** * * * * ** ** **
3328410 ATTAAATAATGAGTCAGAAAATGAAAATGATC-GGTATTAAATCACAAGCCAATAAAACAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAA-AAAATGAAAAT
*
3328474 GATCGAA-
64 GA-CCAAG
* * * *** *
3328481 ATTAAATCATGAGTCAGAAAATGAAAACGATTGAGATTAAACTATGAATCAGAAAATGATAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATG----AG----T--TAA--A
* *
3328546 TAATGAAAATTG-CCAAA
54 AAATGAAAA-TGACCAAG
** * * * * * *
3328563 ATTAAAATACGAGTTAGAAAATGAAAATGACCAGGATTAAAACACCT-A-TTGAAAAATGAAAA-
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATT-AAAC-CATGAGTTAAAAAATGAAAAT
* * *
3328625 CAACTAG
64 GACCAAG
* * * * ** * * * * *
3328632 AATTAAAGCACGAGTTAGAAAATGAAAATGACTGAGACTAAACCCTGAGTGAGAAAATGAAAATC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
3328697 ACC-AG
65 ACCAAG
** ** * * * * *
3328702 AATTAAACCATGAGTCAAAAAATGAAAGCGGTCGAGATTAAACAACGAGTCAGAAAATGAAAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-AAAAT
* * *
3328767 AATCAGG
64 GACCAAG
* * * * * *
3328774 ATTACACCATTAGTCAAAAAATGAAAATGACTAGGATTAATCACA--AGTT-AAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAAC-CATGAGTTAAAAAATGAAAATG
* *
3328836 A-TAGGG
65 ACCA-AG
* * * *** * * * * *
3328842 A-TAAATCAACGTGTTGGAAAATGAAAACT-A-CAGGGATTAAAGCATAAGTAAAAAAATTTAAA
1 ATTAAA-CCATGAGTCAAAAAATGAAAA-TGACCA-AGATTAAACCATGAGTTAAAAAA-TGAAA
* ****
3328904 ATAATGGGG
62 ATGACCAAG
* ** * * **
3328913 ATTGAACCACAAGTCAAAAAGA-GAAAATGA-TAGAGATTAAACCATGAGTCAGCAAATGAAAAT
1 ATTAAACCATGAGTCAAAAA-ATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAAT
*
3328976 GACTGAA-
64 GAC-CAAG
** * * * * * *
3328983 ATTAAATGATAAGTCAAAAAATGAAAATGATC-AGCATTAAATCACGAGTCAAAGGAA-GAAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAA-AAATG-AAAA
* **
3329046 AGA-TTAG
63 TGACCAAG
* ** * * * *
3329053 AATTAAATCACAAGTC--AAAATGAAAAATGACTAGGATTGAACCACT-AGTCAAAAAA--AAAA
1 -ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAA
**
3329113 TGATTGAA-
63 TGA-CCAAG
* ** * * * * *
3329121 ATTAAATCACAAGTCAGAAAATAAAAATGACCAAAATTAAATCATGAGTCT--AAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-TAAAAAATGAAAATG
* *
3329184 ATCAAA
65 ACCAAG
* * * * * * ** * * * * *
3329190 ATTAAATCACGAGTCTAGAACTAAAAATGACTGAGATTAATCTATGAGTTAGAAATTTAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3329255 -TAGG
66 CCAAG
* * * * * * ** * *
3329259 AATTAAACCACGAGTCAGAGAAA-GAAAATGATCGAGATGAATCCACCAATTAGAAAATGAAAAA
1 -ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-AAAA
****
3329323 TGATTGGG
63 TGACCAAG
* * * * ** *
3329331 ATTAAACCATGAGTCAGAAAATGAAGAA-AACGAGGATTAAACCACAAGTCAAAGAAA-GAAAAA
1 ATTAAACCATGAGTCAAAAAATGAA-AATGACCAAGATTAAACCATGAGTTAAA-AAATG-AAAA
*
3329394 TGACCAAA
63 TGACCAAG
* * * * ** * *
3329402 ATT-AATCACGAGTCAAAAAATGAAAATGATC-AGTATTAAATCACAAGTTAGAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
***
3329465 ACTGGG
65 ACCAAG
* * ** * * * * **
3329471 ATTAAACCACGAGTC-AAAAATAAAAACAACTC-AGATTAAATCACGAGTCAGAAAATGAAAACC
1 ATTAAACCATGAGTCAAAAAATGAAAATGAC-CAAGATTAAACCATGAGTTAAAAAATGAAAATG
****
3329534 ATTGGG
65 ACCAAG
* * * * * * * **
3329540 ATTAAACTACGGGTCAAAAAATGAAAACGACTAAGATTAAACCATGGGTTAGAAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3329605 CCAAG
66 CCAAG
** * * * ** * ** ** *
3329610 ATTAAATTACGAGTCAGAAAATGAAAACGA-TTAGTATTAAATCACAAGCCAAAGAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAA-AAATGAAAAT
* *
3329674 GATCAAA
64 GACCAAG
* * * * * * * *
3329681 ATTCATCCATGAGTTAGAAAATGAAAATGATCGAGATTAAACCATGAGTCAAAAAAAGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG-
** *
3329746 TAATAAAA
65 --ACCAAG
** * * * ** * * *
3329754 ATTACTGGAATTTAATTAAGAGTCAGAAAAGGAAAATGATCGGGAGTAAAACGTGAGTTAAAAAA
1 ATTA----AA--CCA-T--GAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAA
** *
3329819 TGAAAACAAGCTAA-
57 TGAAAATGA-CCAAG
* * * ** **** * * * **
3329833 ATTAAAGCACGAGTCAGAAAATGAAAACAATTGGGACTAAACCCTTAG-TAAGAAAATGAAAACC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAA-AAAATGAAAATG
3329897 ACC-AG
65 ACCAAG
*** * * * ** * * ** * *
3329902 -TCATAAA--ATGA---AAGCGATCGAGATTAAATATGAGTCAAAAAATGA---AAAATGATCAA
1 AT--TAAACCATGAGTCAAAAAAT-GAAAATGACCAAGA-TTAAACCATGAGTTAAAA-AATGAA
*
3329958 GATTAT-ACCACG
61 -A--ATGACCAAG
* * ** * * *
3329970 AGTCAAA-CA--A-T--GAAAATG---AT-A-GGA-ATTAAATCATAAGTCAAAAAATAG-AAAT
1 A-TTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAAT-GAAAAT
* *
3330022 GA-TAGGG
64 GACCA-AG
** * * * * *
3330029 ATTAAA-CAACACGTCAAAAAATGAAAATGA-TAGGGATTAAAGCACGAGTTAGAAAATGTAAAA
1 ATTAAACCATGA-GTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATG-AAAA
* * **
3330092 -CAACGGG
63 TGACCAAG
* ** * * * * ** * *
3330099 GTTAAACTTTAATTCGAAAAGTGAAAATGAAGAAGATTAAACCATGAGTTAGAAAATGCAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
**
3330164 -CTGG
66 CCAAG
** * * * *
3330168 AATTAAATGATGAGTCAAAAAATGAAAATGA-CAAGCATTAAATCAAGAGTCAAAGAAATAAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAA-AAATGAAAA
3330232 TGACC-AG
63 TGACCAAG
* * * * * * * **
3330239 AATCAAATCACT-AGTTAGAAAATGAAAATGACCAGGATTAAA-C-TGCTAGTCAAGAAACAAAA
1 -ATTAAACCA-TGAGTCAAAAAATGAAAATGACCAAGATTAAACCATG--AGTTAAAAAATGAAA
* *
3330301 ACGA-CTAG
62 ATGACCAAG
* * * * * * * * *
3330309 AATTAAATCACGAGTTAGAAAATAAAAATGACCAAAATTAAATCATGAGCCT-AAAATTGAAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAG-TTAAAAAATGAAAAT
* * **
3330373 AATCGGG
64 GACCAAG
* * * * * *
3330380 ATTAAACCATGTGTCAAAAAATTAAAATGA-CAAGGATTAAACCACGAGTCAGAGAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGTTAAAAAATGAAAATG
*
3330444 ACCGAG
65 ACCAAG
* ** * * * * * * *
3330450 ATGAAACCACCAGTCAAAAAATAAAAAATGATCGATATTAAACCACGAGTCAGAAAAA-GAAGA-
1 ATTAAACCATGAGTCAAAAAAT-GAAAATGACCAAGATTAAACCATGAGTTA-AAAAATGAAAAT
* * *
3330513 CAACATGG
64 GACCA-AG
* * * * * ** * *
3330521 ATTAAACCATGAGTCAGAGAAATTAAAATGACC-AGAATCAAAACATGAGTCAGCAAATAAAAAC
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
*
3330585 GACCAGG
64 GACCAAG
* ** ** *** * * * *
3330592 ATTAAATCATGAGTCAAAAAACAAAAACAACTGGGATTAAACAACGAGTTAGAAAATAAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAAT-GAAAATG
*
3330657 ACCAGG
65 ACCAAG
* * * * * * * * * **
3330663 ATTAAATCACGAGTCAGAAAATGAAAATAACTACGATTAAACAATGGGTCAAAAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3330728 CTAGG
66 CCAAG
* * * ** * ** * * *
3330733 ATTAAACCATGGGTTAGAAAATGAAAATGACTGAGATTAAATCACAAGTTAGAAAATGAAAACGG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3330798 CCAAC
66 CCAAG
* * ** * * * *
3330803 ATTAAATCCCA--AG-CTAGAGAAATAAAAATGATTGAA-ATTAAATCAAGAGTCAAAAAATAAA
1 ATTAAA--CCATGAGTC-A-AAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAA
* * *
3330864 AACGATCGAG
61 AATGACCAAG
** * * * ** *
3330874 ATTAAACCACAAGTTCAAAAACGAAAACAATAGTGAAAATTACCGAAATTAAATTACT-AGTCAA
1 ATTAAACCATGAG-T------C--AAA-AA-A-TGAAAATGACCAAGATTAAACCA-TGAGTTAA
*
3330938 AAAATGAAAATGACCAGG
53 AAAATGAAAATGACCAAG
* *** * * * * *
3330956 ATCAAAATGTGAGTTAAAAAATG-AAATGACC-GGTATTGAAGCATGAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
* *
3331019 ACTAGG
65 ACCAAG
* * * * * * * * *
3331025 ACTAAACCCTGAGTGAGAAAATGAAAACT-ACTAGGATTAAACCATGAGTCAAAAAATAAAAAAG
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3331089 A-TAGGG
65 ACCA-AG
* * * * * * * *
3331095 ATTAAACAATGCGTTAGAAAATGAAAATGA-TAGGAATTAAAGCACGAG-TAAGAAAATGTAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAA-AAAATG-AAAA
****
3331158 -GAATGGGG
63 TG-ACCAAG
** * * * * *
3331166 ATTAAACCACAAGTCAAAAAGTGAAAATAACCAAGATTAAATCATGAATTAGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3331231 TCAAA
66 CCAAG
* * * * * * * * *
3331236 ATTAAACAACGAGTTC-AAATATGAAAATGATC-AGCACTAAATCACGAGTCAAAGAAATAAAAA
1 ATTAAACCATGAG-TCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAA-AAATGAAAA
* *
3331299 TGA-TAGG
63 TGACCAAG
* * * * * * * *
3331306 AATCAAATCACGAGTCAAAAAATGAAAAAGATCGAGATTAAACCACT-AGTCAAAAAATGAAAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAAT
* **
3331370 AATTGAA-
64 GA-CCAAG
* * * * * * * **
3331377 ACTAAATCACGAGTCAAAAAATAAAAATGACCAAAATTAAATCATGAGTCT-AAAACTGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-TAAAAAATGAAAATG
* *
3331441 ATCTAG
65 ACCAAG
* * * * * * *
3331447 ATTAAACCATGAGTCAAAAAATTACAA-CAACAAGGATTAAACCATGAGTTAGAGAATGAAAATA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGTTAAAAAATGAAAATG
*
3331511 ACCGAG
65 ACCAAG
* ** * **** * * ** *
3331517 ATGAAACCACCAGTCAAAAAATGAAAAACGATTGGGATTAAACCACT-AGTCAGAAAACAAAAAC
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCA-TGAGTTAAAAAATGAAAAT
* ****
3331581 AATGGGG
64 GACCAAG
* * * * * * *
3331588 ATTAAACCATGAGTAAGAAAAATAAAAATGACCAAAATTAAATCATGAGTTAGAAAATAAAAAAA
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAAT-GAAAAT
***
3331653 GA-TGGG
64 GACCAAG
** * * * ** *
3331659 AATTAAACCACAAGTCAAAAAATGAAAATGATCGAGATTAAATCACAAGTCAAAAAAT-AGAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGA-AAAT
*
3331723 GACCAAA
64 GACCAAG
* * * * ** * *
3331730 ATTAAACCACGAGTCAAAAAATAAAAATGGCCAAGATTAAATCACAAGTCATAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3331795 TCGAG
66 CCAAG
* * * * * * * * *
3331800 ATTAAACCATGGGTTAGAAAATAAAAACGATCAGGATT-AACCATGGGTTAGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3331864 CCGAG
66 CCAAG
* * * * * ** ** * *
3331869 ATTAAATCATGAGCCAAAAAATGAAAATGATC-GGTATTAAATCACAAGCCAATGAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAA-AAAATGAAAAT
**
3331933 GATTGAA-
64 GA-CCAAG
* * * * * * * ** * *
3331940 ATTAAATCATTAGTGAGAAAATAAAAATGATCGAGATTAAACCACAAATCAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3332005 -TAATG
66 CCAA-G
** * * *** * * * * *
3332010 AAAATTAACAAAATTAAATTACAAGTTAGAAAATGAAAATGACTGGGACTAAACCCTAAGTGAGA
1 ---ATTAA-ACCA-T-GAGT-C-A---A-AAAATGAAAATGACCAAGATTAAACCATGAGTTAAA
* *
3332075 AAATGAAAATCACCAGG
54 AAATGAAAATGACCAAG
* * * * * * * *
3332092 ATTAAACCATGAGTCAGAAAATGAAAAATGATCAGGATTACACCACGAGTCAAAAAATAAAAACG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
** *
3332157 ATTAGG
65 ACCAAG
* * * * * * * * **
3332163 ATTAAATCATGAGT-TAAAAAT-AAAA-GA-GATAGGGATAAAACAACGTGCTGGAAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-A--GATTAAACCATGAGTTAAAAAATGAAAA
* *
3332224 CT-A-TAGGG
63 -TGACCA-AG
* * * ** *
3332232 ATTAAAGCATGAGTCAAAAAATGTAAAACT-A-TAAGGATTGAACCACAAGTCAAAAAGA-GAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAA-TGACCAA-GATTAAACCATGAGTTAAAAA-ATGAAA
*
3332294 ATGA-TAGAG
62 ATGACCA-AG
** * * * *
3332303 ATTAAACCATGAGTCAGCAAATAAAAATGATCGAA-ATTAAACGATGAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAATG
* *
3332367 ATC-GG
65 ACCAAG
* ** * * * * * *
3332372 CATTAAATCACAAGTCAAAGAAATAAAAATGATCAAAATTAAATCATGAGTCAAAAAATAAAAAA
1 -ATTAAACCATGAGTCAAA-AAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAAT-GAAAA
***
3332437 TGACTGGG
63 TGACCAAG
* * * ** * *
3332445 ATTAAACCACT-AGTCAAAAAATTAAAATGATCGAA-ATTAAATCACAAGTCAGAAAAT-AAATA
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAA-A
*
3332507 TGACCAAA
63 TGACCAAG
* * * ** * * * * * * *
3332515 ATTAAATCACGAGTC-TAAGGTAAAAATGATCAAAATTAAATCACGAGTCT-AAAATTAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-TAAAAAATGAAAATG
*
3332578 ACCGAG
65 ACCAAG
* * * * * * * * * * * *
3332584 ATTAATCCACGAGTTAGAAAATTAAAATGA-CAGGAATTAAACCAAGAGTCAGAGAATAAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
* *
3332648 ATCGAG
65 ACCAAG
* * * ** * *
3332654 ATTAATCCATTAGTCAGAAAATGAAAAATGATTAGGATTAAACCATGAGTCAAAAAATGATGAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGA--AAA
* *
3332719 --ACGAGG
63 TGACCAAG
** ** * * * * * *
3332725 ATTAAACCACAAGT-AAGAGAAACAAAAATGACCAAAATTAAATCACGAATCAGAAAATGAAAA-
1 ATTAAACCATGAGTCAA-A-AAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAAT
* * *
3332788 CAACGAG
64 GACCAAG
* * * * ** * ** * *
3332795 AATTAAACTATGAGTCAAAAAATAAAAAAGATCGGGATTAAATCACAAGTCAGAGAAAATAAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTA-A-AAAATGAAAA
* *
3332860 TGACTAGG
63 TGACCAAG
* * * *** ** * *
3332868 ATATAAACCACGAGTCAAAAAATAAAAACGACTTGGATTAAATTACGAGTCAAAAAATGAAAATG
1 AT-TAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
****
3332933 ATTGGG
65 ACCAAG
* * * * * * * * * **
3332939 ATTAAACTATGGGTCAGAAAATGAATACGA-TAGAGATTAAACCATGGGTTAGAGAATGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATGAAAATG
*
3333003 ACCGAG
65 ACCAAG
** ** * * * * * *
3333009 ATTAAATTATGAGTCTGAAAATG-AAATCGATC-AGTATTAAATCATAAGCTAGAGAAATAAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAAT-GACCAAG-ATTAAACCATGAGTTA-AAAAATGAAAA
* *
3333072 TGATCAAA
63 TGACCAAG
* * ** * *** * * * * *
3333080 ATTCAATCACAAGTCAGAAAATGAAAATGATTGAGATTAAAACACGAGTCAGAAAAGGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG-
**
3333145 TAATAAAAATTTTTGG
65 ----ACCAA------G
** * * * * * * * *
3333161 AATTAAATTAGGAGTCAGAAAATAAAAAATGACTAGGAGTAGAATTCA--AGTTAAAAAAAGAAA
1 -ATTAAACCATGAGTCAAAAAAT-GAAAATGACCAAGATTA-AA-CCATGAGTTAAAAAATGAAA
3333224 ATGACCTAA-
62 ATGACC-AAG
* * * ** ***** * * * * * **
3333233 ATTAAAGCACGAGTCAGAAAATGAAAGCGTTTGGGACTAAACCCTTAGTGAGAAAATGAAAACCA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
3333298 CC-A-
66 CCAAG
* ** * ** * ** * *
3333301 ATCAAAAAATGA---AAACAATCGAGATTAAATGA-TGAG-TCAAAAAATGA---AAAATGATCA
1 ATTAAACCATGAGTCAAAAAAT---GA--AAATGACCAAGATTAAACCATGAGTTAAAA-AATGA
3333358 AGATTAT-ACCACA-
60 A-A--ATGACCA-AG
* * * * ** * *
3333371 AGTCAAA--A--AAT--GAATATG---AT-A-GGA-ATTAAATCATAAGTTAAAAAATAG-AAAT
1 A-TTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAAT-GAAAAT
* *
3333423 GACAATG
64 GACCAAG
* * * * * * *
3333430 ATTAAACAACGTGTCAAAAAATGAAAATGA-TAGGGATTAAAACATGAGTTAGAAAATGTAAAA-
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCA-AGATTAAACCATGAGTTAAAAAATG-AAAAT
* * *
3333493 CAACAGGG
64 GACCA-AG
* * ** * ** * *
3333501 ATTAAACTATAAGTTGAAAAGTGAAAATGAAGAAGATTAAACCATGAGTTAGAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3333566 -CTAG
66 CCAAG
** * * * * * * *
3333570 AATTAAATGATGAGTCGAACAATGAAAATGACCGACATTAAATCATGAGTCAAAGAAAT-AAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAA-AAATGAAAAT
* * *
3333634 CAACTAG
64 GACCAAG
* * * * * * * * *
3333641 AATCAAATCATGAGTTAGAAAATAAAAATGATCAGGATTAAACTACT-AGTCTAGAAACA--AAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGT-TA-AAAAATGAAA
**
3333703 ATGA-CTGG
62 ATGACCAAG
* * * * * * * * *
3333711 AATTAAATCACGAGTTAGAAAATAAAAATGATCGAA-ATTAAATCATGAGCCT-AAAATTGAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGA-CCAAGATTAAACCATGAG-TTAAAAAATGAAAA
* *
3333774 CGACCAGG
63 TGACCAAG
* * * * * * * *
3333782 ATTAAACCATGAGCCTAAAAATTAAAACGACAAAGATTAAACCATGAGTCAGAGAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
*
3333847 CCGAG
66 CCAAG
** * ** * * * *
3333852 ATT-AACCACCAGTCAAAAAATGAAAAATGATCGGGATTAAACCATGAGTTAGACAATGAAGA-C
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATG
*
3333915 AACAAGG
65 ACCAA-G
* * * * * * *
3333922 ATTAAACCATGAGTCAGAGAAATAAAAATTACC-AGAATCAAAACATGAGTCAGAAAATGAAAAT
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAAT
*
3333986 GACCGAG
64 GACCAAG
* * * * ** ** ** *
3333993 ATTAAATCATGATTCAGAAAATAAAAACAACCGGGATTAAATAATGAG-TCAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3334057 CTAGG
66 CCAAG
* * * * ** * * * * *
3334062 ATTAAACCATGGGTTAGACAATGAAAACAACTAGGATTAAACCATGGGTTAGAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
**
3334127 CTGAG
66 CCAAG
* * * * ** * ** * *
3334132 ATTAAATCACGAGTTAGAAAATGAAAATGGTCAACATTAAACCACAAGCTAAAGAAATCAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAA-AAATGAAAATG
**
3334197 ATTGAA-
65 A-CCAAG
* * * * * * * *
3334203 ATTAAATCAAGAGTTAGAAAATGAAAATGATCGAGATTAAACCACGAGTTCAAAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATG-----AA
**
3334268 TAATGAAAATTATCG
61 -AATGACCA--A--G
** ** * * **
3334283 AAATTAAATTACTAGTCAAAAAATGAAAATGAAAATGACCAGGATCAAA--ATGCGAGCAAAAAA
1 --ATTAAACCATGAGTCAAAAA------ATGAAAATGACCAAGATTAAACCAT--GAGTTAAAAA
* * * *
3334346 AT-AAAAGCGATCGAT
56 ATGAAAA-TGACCAAG
* * * ** * * * * **
3334361 ATTAAAGCACGAGTCAAAAAATGAAAAAGA-CTGGAACTAAACCCTGAGTGAGAAAATGAAAACC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
* *
3334425 ACTAGG
65 ACCAAG
* ** * * * * * * *
3334431 ATTAAACCACGAAACAAAAAATAAAAATGAAC-TGAATTACATCATAAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
*
3334495 ACCGAG
65 ACCAAG
* * **** * *
3334501 ATTAAATCATGAGTCAAAAAATAAAAATGATGGGGATTAAACAAT-A-TGTCAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGT-TAAAAAATGAAAATG
* *
3334564 A-TAGG
65 ACCAAG
* * * **** ** * *
3334569 AATTAAAGCACGAGT-AAGAAAATGTAAAATAATGGGGATTAAACCACAAGTCAAAAAGTGAAAA
1 -ATTAAACCATGAGTCAA-AAAATG-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAA
3334633 TGA-CAGAG
63 TGACCA-AG
* * * * * ** *
3334641 ATTAAAACGTGAGTCAGAAAGTGAAAATGATCAA-ATTAAA-CAACAATTCAAAAAA--AAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTT-AAAAAATGAAAATG
*
3334702 ATC-AG
65 ACCAAG
* * * * * *
3334707 CATTAAATCACGAGTCAAATAAATAAAAATGACC-AGAATCAAATCATGAG-TCAAAAATGAAAA
1 -ATTAAACCATGAGTCAAA-AAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAA
* ***
3334770 AGATTGAG
63 TGACCAAG
** * * * * *
3334778 ATTAAACCACT-AGTCAAAAAATGAAAACAACCGAA-ACTAAATCATGACTCAGAAAATGAAAAT
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACC-AAGATTAAACCATGAGTTAAAAAATGAAAAT
*
3334841 GACCAAA
64 GACCAAG
* * * * * * * * *
3334848 ATTAAATCATAAGTC-TAAAATCGAAAAACGATCGAGATTAAACCATGAGTCAGAAAATTACAAA
1 ATTAAACCATGAGTCAAAAAAT-G-AAAATGACCAAGATTAAACCATGAGTTAAAAAATGA-AAA
* *
3334912 --AACAGGG
63 TGACCA-AG
* * * * * * * *
3334919 ATTAAACCATGAGTTAGAGAATGAAATTGACCGAGATAAAACCACT-AGTCAAAAAATGAAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-TGAGTTAAAAAATG-AAAAT
* **
3334983 GATCGGG
64 GACCAAG
* ** * *
3334990 ATTAAACCACT-AGTCAAAAAATGAAGA-GAATAAGGATTAAACCATGAGTCAAAAAAATAAAAA
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACCAA-GATTAAACCATGAGT-TAAAAAATGAAAA
*
3335053 TGACCAAA
63 TGACCAAG
* * * * *** * * * *
3335061 ATTAAATCATGAGTCAGAAAATAAAAAAGA-TGGGAATTAAACCACGAGTCAGAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCATGAGTTAAAAAATGAAAATG
* *
3335125 ATCGAG
65 ACCAAG
* * ** * * *
3335131 ATTAAATCACGAGTCAAAAAAT-AGAAATGATTGAA-ATTAAACCACGAGTCAAAAAATAAAAAT
1 ATTAAACCATGAGTCAAAAAATGA-AAATGA-CCAAGATTAAACCATGAGTTAAAAAATGAAAAT
*
3335194 GACCAGG
64 GACCAAG
* ** * * ** * * *
3335201 ATTAAATCACAAGTCATAAAATGAAAATGATCGGGATTAAACCATGGGTTAGAAAATGAAAAGGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3335266 TCAGG
66 CCAAG
* * * * * * *
3335271 ATT-AACCATGGGTTAGAAAATGAAAATGACCGAGATTAAATCATGAGTCAAAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
* *
3335335 TCGAG
66 CCAAG
* * *
3335340 ATTAAACCTTGAATCAGAAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAA
3335367 CAATAATGAA
Statistics
Matches: 27509, Mismatches: 8012, Indels: 4649
0.68 0.20 0.12
Matches are distributed among these distances:
58 47 0.00
59 34 0.00
60 29 0.00
61 61 0.00
62 18 0.00
63 27 0.00
64 76 0.00
65 112 0.00
66 170 0.01
67 299 0.01
68 977 0.04
69 3066 0.11
70 11423 0.42
71 7682 0.28
72 1044 0.04
73 271 0.01
74 135 0.00
75 141 0.01
76 215 0.01
77 49 0.00
78 50 0.00
79 75 0.00
80 103 0.00
81 248 0.01
82 922 0.03
83 76 0.00
84 42 0.00
85 32 0.00
86 19 0.00
87 19 0.00
88 33 0.00
89 7 0.00
90 1 0.00
91 6 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (70 bp):
ATTAAACCATGAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTTAAAAAATGAAAATGA
CCAAG
Found at i:3298053 original size:36 final size:35
Alignment explanation
Indices: 3297942--3298057 Score: 101
Period size: 36 Copynumber: 3.3 Consensus size: 35
3297932 AATGACCAAG
* * * * *
3297942 ATTAAACCATGAGTCAAAAAA-TGAAAATGACCAAA
1 ATTAAATCATGAGTTAAAAAACTAAAAATAATC-AA
* * *
3297977 ATTAAA-CGATGAGTTAAAAAATTGAAAATGATCAA
1 ATTAAATC-ATGAGTTAAAAAACTAAAAATAATCAA
*
3298012 CATTAAATCATGAGTTAAAAAACTAAAAATAATTGAA
1 -ATTAAATCATGAGTTAAAAAACTAAAAATAA-TCAA
3298049 ATTAAATCA
1 ATTAAATCA
3298058 CGAGCCAGAA
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
34 1 0.01
35 20 0.29
36 45 0.64
37 4 0.06
ACGTcount: A:0.56, C:0.09, G:0.10, T:0.24
Consensus pattern (35 bp):
ATTAAATCATGAGTTAAAAAACTAAAAATAATCAA
Found at i:3299235 original size:20 final size:20
Alignment explanation
Indices: 3299212--3299268 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 20
3299202 AAAATGACCG
3299212 AAATTAAATCACGAGTCAAA
1 AAATTAAATCACGAGTCAAA
* *
3299232 AAA-TAAA-AATGA-TC--A
1 AAATTAAATCACGAGTCAAA
3299247 AAATTAAATCACGAGTCTAAA
1 AAATTAAATCACGAGTC-AAA
3299268 A
1 A
3299269 TTGAAAAAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 11
0.64 0.10 0.26
Matches are distributed among these distances:
15 4 0.15
16 4 0.15
17 5 0.19
18 5 0.19
19 4 0.15
20 3 0.11
21 2 0.07
ACGTcount: A:0.58, C:0.12, G:0.09, T:0.21
Consensus pattern (20 bp):
AAATTAAATCACGAGTCAAA
Found at i:3299270 original size:19 final size:18
Alignment explanation
Indices: 3299212--3299270 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
3299202 AAAATGACCG
3299212 AAATTAAATCACGAGTCAA
1 AAATTAAATCACGAGTC-A
* * *
3299231 AAAATAAA-AATGA-TCA
1 AAATTAAATCACGAGTCA
3299247 AAATTAAATCACGAGTCTA
1 AAATTAAATCACGAGTC-A
3299266 AAATT
1 AAATT
3299271 GAAAAAGGCT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
16 8 0.26
17 5 0.16
18 5 0.16
19 13 0.42
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (18 bp):
AAATTAAATCACGAGTCA
Found at i:3299449 original size:139 final size:137
Alignment explanation
Indices: 3299190--3299451 Score: 289
Period size: 139 Copynumber: 1.9 Consensus size: 137
3299180 TTAAACCACT
* * * *
3299190 AGTCAAAAAATAAAAATGACCGAAATTAAATCACGAGTCAAAAAATAAAAATGATCAAAATTAAA
1 AGTCAAAAAATAAAAATGACCGAAATGAAACCACGAGTCAAAAAAGAAAAACGATCAAAATTAAA
* * * * *
3299255 TCACGAGTCTAAAATTGAAAAAGGCTAAGATTAAACCACGAGTCAGAAAATTAAAAATAAGGGTT
66 CCACAAGTCTAAAAATGAAAAA-GCTAAAATTAAACCACGACTCAGAAAATTAAAAATAAGGGTT
3299320 CAACCAAG
130 CAACCAAG
* * * **
3299328 AGTCAAAAAATGAAAATGACCGAGATGAAACCACTAGTCAAAAAAAGAAAAACGATCAGGATTAA
1 AGTCAAAAAATAAAAATGACCGAAATGAAACCACGAGTC-AAAAAAGAAAAACGATCAAAATTAA
* *
3299393 ACCACAAGTC-AGAAAATGAAGATAA-C-AGAAATTAAACCATGACTTAGAGAAA-TAAAAAT
65 ACCACAAGTCTA-AAAATGAA-A-AAGCTA-AAATTAAACCACGACTCAGA-AAATTAAAAAT
3299452 GACCATAATT
Statistics
Matches: 102, Mismatches: 16, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
138 36 0.35
139 60 0.59
140 4 0.04
141 2 0.02
ACGTcount: A:0.55, C:0.13, G:0.15, T:0.17
Consensus pattern (137 bp):
AGTCAAAAAATAAAAATGACCGAAATGAAACCACGAGTCAAAAAAGAAAAACGATCAAAATTAAA
CCACAAGTCTAAAAATGAAAAAGCTAAAATTAAACCACGACTCAGAAAATTAAAAATAAGGGTTC
AACCAAG
Found at i:3299683 original size:138 final size:138
Alignment explanation
Indices: 3299110--3299763 Score: 466
Period size: 138 Copynumber: 4.7 Consensus size: 138
3299100 TGACCAACAC
* * * * * * * * *
3299110 TAAATCACAAGTCAAAGCAATAAAAATGACC-AGAATCAAATCACGAGTCAAAAAATGAGAATGA
1 TAAATCACAAGT--TAGAAATAAAAATGACCAAG-ATTAAACCATGAGTTAGAAAATAAAAATGA
* * * *
3299174 TCGGGATTAAACCACT-AGTCAAAAAATAAAAATGACCGAAATTAAATCACGAGTCAAAAAATAA
63 CCGGGATTAAACCA-TGAGTCAAAAAATGAAAATGACCGAGATTAAACCACGAGTCAAAAAATAA
* **
3299238 AAATGATCAAAAT
127 AAACGATC-GGAT
* * * * *
3299251 TAAATCACGAGTCTA-AAATTGAAAAA-GGCTAAGATTAAACCACGAGTCAGAAAATTAAAAAT-
1 TAAATCACAAGT-TAGAAA-T-AAAAATGACCAAGATTAAACCATGAGTTAGAAAA-TAAAAATG
* * * * * *
3299313 A-AGGG-TTCAACCAAGAGTCAAAAAATGAAAATGACCGAGATGAAACCACTAGTCAAAAAAAGA
62 ACCGGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAACCACGAGTC-AAAAAATA
3299376 AAAACGATCAGGAT
126 AAAACGATC-GGAT
* * * * * * *
3299390 TAAACCACAAGTCAGAAAATGAAGAT-AACAGAAATTAAACCATGACTTAGAGAAATAAAAATGA
1 TAAATCACAAGTTAG-AAATAAAAATGACCA-AGATTAAACCATGAGTTAGA-AAATAAAAATGA
*** * * * * **
3299454 CCATAATTAAATCATGAGTCAAAAAATGAAAATGA-TGGGAATTAAACCACG-GTCAGAAAATGG
63 CCGGGATTAAACCATGAGTCAAAAAATGAAAATGACCGAG-ATTAAACCACGAGTCAAAAAATAA
*
3299517 AAACGAACGAGAT
127 AAACGATCG-GAT
** * * *
3299530 TAAATCATGAGTTAGAAA-AAAAATGACCATGATTAAACCATGAGTTTGAAAATGAAAATGACCG
1 TAAATCACAAGTTAGAAATAAAAATGACCAAGATTAAACCATGAGTTAGAAAATAAAAATGACCG
* * * * *
3299594 GGATTAAACCATGGGTTAAAAAATGAAAATGACTGAGATTAAATCACGAGTCAAAAAATAAAAAT
66 GGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAACCACGAGTCAAAAAATAAAAAC
3299659 GATCGGTAT
131 GATCGG-AT
** * * * * * *
3299668 TAAATTTCAAGTTAGAGAAATAAAAATGATCAAAATTAAATCATGAGTTAGAAAACAAAAACGAT
1 TAAATCACAAGTT--AGAAATAAAAATGACCAAGATTAAACCATGAGTTAGAAAATAAAAATGAC
** **
3299733 CAAGATTAAACCATGAGTCAGGAAATGAAAA
64 CGGGATTAAACCATGAGTCAAAAAATGAAAA
3299764 CAATAATGAA
Statistics
Matches: 395, Mismatches: 95, Indels: 46
0.74 0.18 0.09
Matches are distributed among these distances:
137 51 0.13
138 96 0.24
139 64 0.16
140 61 0.15
141 88 0.22
142 35 0.09
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (138 bp):
TAAATCACAAGTTAGAAATAAAAATGACCAAGATTAAACCATGAGTTAGAAAATAAAAATGACCG
GGATTAAACCATGAGTCAAAAAATGAAAATGACCGAGATTAAACCACGAGTCAAAAAATAAAAAC
GATCGGAT
Found at i:3300537 original size:69 final size:70
Alignment explanation
Indices: 3300418--3300547 Score: 156
Period size: 69 Copynumber: 1.9 Consensus size: 70
3300408 AACGGGGATT
** * * * *
3300418 AACCACAAGTTAGAAAATAAAATGACTAGAATTTAATCATGAATCAT-AAAATGAAAATGATGGG
1 AACCACAAGTTAGAAAATAAAAACAATAGAATTAAATCACGAATCATAAAAATAAAAATGATGGG
3300482 AATTA
66 AATTA
* * *
3300487 AACCACAAGTTAGAAAATAAAAACAATCGATATTAAATCCCGAGTC-TAAAAATAAAAATGA
1 AACCACAAGTTAGAAAATAAAAACAATAGA-ATTAAATCACGAATCATAAAAATAAAAATGA
3300548 CCTAGATTAA
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
69 27 0.54
70 23 0.46
ACGTcount: A:0.54, C:0.12, G:0.12, T:0.22
Consensus pattern (70 bp):
AACCACAAGTTAGAAAATAAAAACAATAGAATTAAATCACGAATCATAAAAATAAAAATGATGGG
AATTA
Found at i:3301156 original size:36 final size:34
Alignment explanation
Indices: 3301116--3301217 Score: 91
Period size: 34 Copynumber: 2.9 Consensus size: 34
3301106 TAAAAATGAT
3301116 AGGGATTAAAGCACGAGTCAGAAAATGTAAAATAAC
1 AGGGATTAAAGCAC-AGTCA-AAAATGTAAAATAAC
* * *
3301152 AGGGATTAAACCACAGTCAAAAA-GTGAAATTGAC
1 AGGGATTAAAGCACAGTCAAAAATGT-AAAATAAC
* * *
3301186 CGAGATTAAAGAACAAGTCAAAAAAT-TAAAAT
1 AGGGATTAAAGCAC-AGTC-AAAAATGTAAAAT
3301218 GACTGACATT
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
33 2 0.04
34 20 0.37
35 13 0.24
36 19 0.35
ACGTcount: A:0.52, C:0.12, G:0.19, T:0.18
Consensus pattern (34 bp):
AGGGATTAAAGCACAGTCAAAAATGTAAAATAAC
Found at i:3301773 original size:141 final size:142
Alignment explanation
Indices: 3301524--3301778 Score: 342
Period size: 141 Copynumber: 1.8 Consensus size: 142
3301514 ACCAGTTAGG
* * * *
3301524 AAATGAAAAATGATCGGGATTAAACCATGAGTCAAAAAATTAAGACAACATGGATTAAACCATGA
1 AAATGAAAAATGATCGGGATTAAACCACGAGTCAAAAAATAAAAACAACATAGATTAAACCATGA
* *
3301589 GTCATAGAAATAAAAATGATCAGAATTAAATCACATGTCAAAAAATGAAATGGATGGGAATTCAA
66 GTCATAAAAATAAAAATGACCAGAATTAAATCACATGTCAAAAAATGAAATGGATGGGAATTCAA
3301654 CTACAAGTCAGA
131 CTACAAGTCAGA
* * *
3301666 AAATG-AAAATGATTGGGATTAAATCACGAGTCAAAAAATAAAAACGAC-TAAGATTAAACCATG
1 AAATGAAAAATGATCGGGATTAAACCACGAGTCAAAAAATAAAAACAACAT-AGATTAAACCATG
*
3301729 AGTCA-AAAAATAACAAA-GACCCAG-ATTAAATCATGA-GTCAAAAAATGAAA
65 AGTCATAAAAATAA-AAATGA-CCAGAATTAAATCA-CATGTCAAAAAATGAAA
3301779 ACAACCAGGA
Statistics
Matches: 99, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
140 33 0.33
141 61 0.62
142 5 0.05
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (142 bp):
AAATGAAAAATGATCGGGATTAAACCACGAGTCAAAAAATAAAAACAACATAGATTAAACCATGA
GTCATAAAAATAAAAATGACCAGAATTAAATCACATGTCAAAAAATGAAATGGATGGGAATTCAA
CTACAAGTCAGA
Found at i:3302627 original size:105 final size:105
Alignment explanation
Indices: 3302257--3302882 Score: 360
Period size: 106 Copynumber: 5.9 Consensus size: 105
3302247 GACAGGGATT
* * * * * * *
3302257 AAATCACGAGTTA-AAAAGTGAAAATGAT-TGAGATTAAACGATGAGTCAAAAAATGAAAACGAC
1 AAATCACAAGTTAGAAAA-TAAAAATGATCAG-GATTAAACCAAGATTCAAAAAATGAAAACGAT
** * * * *
3302320 CAGCATTAAATCACAAGTCAAAGAAATAAAATTGA-TCAGAATC
64 CAAAATTAAATCACAAGTTAGA-AAATAAAAATGACT-AAAATC
** * * * ** *
3302363 AAATCATGAGTTAGAAAATAAAAATGATTATGATTAAACTACTATTCAAAAAATGAAAACGATCG
1 AAATCACAAGTTAGAAAATAAAAATGATCAGGATTAAACCAAGATTCAAAAAATGAAAACGATCA
* * * * *
3302428 GAATTAAATCACAAGTCAAAGAAATAAAAATGATTAGAATC
66 AAATTAAATCACAAGTTAGA-AAATAAAAATGACTAAAATC
** **
3302469 AAATCATGAGTTAGAAAATAAAAATGATCAGGATTAAACCACTATTCAAAAAATGAAAACGATCA
1 AAATCACAAGTTAGAAAATAAAAATGATCAGGATTAAACCAAGATTCAAAAAATGAAAACGATCA
*
3302534 AAATTAAATCACAAGTTAGAAAATAAAAATGACTAAAATT
66 AAATTAAATCACAAGTTAGAAAATAAAAATGACTAAAATC
* * * * *
3302574 AAATCACAAGTCT-GAAATTGAAAATGA-CCGCGATTAAACCAAGAGTT-AGAAAATTAAAACGG
1 AAATCACAAGT-TAGAAAATAAAAATGATCAG-GATTAAACCAAGA-TTCAAAAAATGAAAAC-G
* ** * * *
3302636 A--AAGGATTAAATCATGAGTTAGAAAATGAAAATGA-TCAAGATG
62 ATCAA-AATTAAATCACAAGTTAGAAAATAAAAATGACT-AAAATC
* * * * * * * *
3302679 AAACCACTAGTCAAAAAATGAAAAATAATC-GAGATTAAACCACGAGTCAAAAAAT-AAAGACAA
1 AAATCACAAGTTAGAAAAT-AAAAATGATCAG-GATTAAACCAAGATTCAAAAAATGAAA-ACGA
**** * * * * * ** *
3302742 TGGTGATTAAACCATAAGTCAGAGAAAT-AAACTAACTTGAATT
63 TCAAAATTAAATCACAAGTTAGA-AAATAAAAATGACTAAAATC
* * ** * * *
3302785 AAATCACAAGATAGAAAATGAAAACAAT-GGGAATTAAACCAAGAGTCAAAAAATGAAAATGATC
1 AAATCACAAGTTAGAAAATAAAAATGATCAGG-ATTAAACCAAGATTCAAAAAATGAAAACGATC
** **
3302849 AGGATTAAATCATGAGTTAGAAAATAAAAATGAC
65 AAAATTAAATCACAAGTTAGAAAATAAAAATGAC
3302883 CAGGATTAAA
Statistics
Matches: 420, Mismatches: 78, Indels: 45
0.77 0.14 0.08
Matches are distributed among these distances:
104 10 0.02
105 163 0.39
106 236 0.56
107 11 0.03
ACGTcount: A:0.53, C:0.11, G:0.15, T:0.21
Consensus pattern (105 bp):
AAATCACAAGTTAGAAAATAAAAATGATCAGGATTAAACCAAGATTCAAAAAATGAAAACGATCA
AAATTAAATCACAAGTTAGAAAATAAAAATGACTAAAATC
Found at i:3302717 original size:211 final size:210
Alignment explanation
Indices: 3302473--3302914 Score: 466
Period size: 211 Copynumber: 2.1 Consensus size: 210
3302463 AGAATCAAAT
* * * * * *
3302473 CATGAGTTAGAAAATAAAAATGATCAGGATTAAACCACTATTCAAAAAATGAAA-ACGATCAAAA
1 CATGAGTCAAAAAATAAAAATAATCAGGATTAAACCACGAGTCAAAAAAT-AAAGACAATCAAAA
* * * * * *
3302537 TTAAATCACAAGTTAGA-AAATAAAAATGACTAAAATTAAATCACAAG-TCTGAAATTGAAAATG
65 TTAAACCACAAGTCAGAGAAAT-AAAATAACTAAAATTAAATCACAAGAT-AGAAAATGAAAA-C
* * * *
3302600 ACCGCG-ATTAAACCAAGAGTTAGAAAATTAAAACGGA-AAGGATTAAATCATGAGTTAGAAAAT
127 AACGCGAATTAAACCAAGAGTCAAAAAATGAAAA-GGATAAGGATTAAATCATGAGTTAGAAAAT
* *
3302663 GAAAATGATCAAGATGAAAC
191 AAAAATGACCAAGATGAAAC
***
3302683 CACT-AGTCAAAAAATGAAAAATAATC-GAGATTAAACCACGAGTCAAAAAATAAAGACAATGGT
1 CA-TGAGTCAAAAAAT-AAAAATAATCAG-GATTAAACCACGAGTCAAAAAATAAAGACAATCAA
* * * **
3302746 GATTAAACCATAAGTCAGAGAAATAAACTAACTTGAATTAAATCACAAGATAGAAAATGAAAACA
63 AATTAAACCACAAGTCAGAGAAATAAAATAACTAAAATTAAATCACAAGATAGAAAATGAAAACA
* * * *
3302811 ATGGGAATTAAACCAAGAGTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTTAGAAAATAA
128 ACGCGAATTAAACCAAGAGTCAAAAAATGAAAAGGATAAGGATTAAATCATGAGTTAGAAAATAA
* *
3302876 AAATGACCAGGATTAAAC
193 AAATGACCAAGATGAAAC
*
3302894 CATGAGTCAGAAAATAAAAAT
1 CATGAGTCAAAAAATAAAAAT
3302915 GACCCAAATT
Statistics
Matches: 190, Mismatches: 33, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
210 27 0.14
211 158 0.83
212 5 0.03
ACGTcount: A:0.53, C:0.11, G:0.15, T:0.20
Consensus pattern (210 bp):
CATGAGTCAAAAAATAAAAATAATCAGGATTAAACCACGAGTCAAAAAATAAAGACAATCAAAAT
TAAACCACAAGTCAGAGAAATAAAATAACTAAAATTAAATCACAAGATAGAAAATGAAAACAACG
CGAATTAAACCAAGAGTCAAAAAATGAAAAGGATAAGGATTAAATCATGAGTTAGAAAATAAAAA
TGACCAAGATGAAAC
Found at i:3303700 original size:32 final size:34
Alignment explanation
Indices: 3303653--3303743 Score: 89
Period size: 32 Copynumber: 2.7 Consensus size: 34
3303643 CACGAATCAG
*
3303653 AAAATGAAAACGACCGAGAA-TAAACCATTAGT-AA
1 AAAAT-AAAACGACCGA-AATTAAACCATTACTCAA
* *
3303687 AAAA-AAAATGACCGAAATTAAATCATTACTCAA
1 AAAATAAAACGACCGAAATTAAACCATTACTCAA
* *
3303720 AAAATAAAAATGATCGAAATTAAA
1 AAAAT-AAAACGACCGAAATTAAA
3303744 TCATGAGTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
31 2 0.04
32 20 0.41
33 6 0.12
34 4 0.08
35 17 0.35
ACGTcount: A:0.59, C:0.12, G:0.10, T:0.19
Consensus pattern (34 bp):
AAAATAAAACGACCGAAATTAAACCATTACTCAA
Found at i:3304497 original size:140 final size:139
Alignment explanation
Indices: 3303318--3335366 Score: 1601
Period size: 141 Copynumber: 227.5 Consensus size: 139
3303308 AAGCAATCGA
* * * *** * * * *
3303318 GATTAAACGATGAGTTAGAAAATGAAAAATGACCAAGATTATACCACGAGTCAAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * ***
3303383 GACTAGGATTAAATCATGAGTCAAAAAATAAAAATGA-C-AAGGATTAAATAATAC-A-TTGGAA
65 GAC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA--ATTAAAT--CACGAGTCAAAA
*
3303444 AATGAAAACGA-CAGG
125 AATGAAAATGATCA-G
* * ** * * * *
3303459 GATTAAAGCATGAGTCAAAAAATGTAAAACAAC-AGGATTAAACCATAAGTTA-AAAAGTGAAAA
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCATGAGTCAGAAAA-TAAAAA
* ** * * * * ** *
3303522 TGATC-GAGATTAAATCACAAGTCAAAAAATTAAAATGATC-AGAATTAAATGAAAAGTCCAAAA
64 TGA-CAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAA
*
3303585 ATGAAAATGACCAG
126 ATGAAAATGATCAG
* * ** * * * * *
3303599 CATTAAATCATGAGTCAAAGAAATAAAAATGA-TCGAAATCAAATCACGAATCAGAAAATGAAAA
1 GATTAAACCATGAGTCAAA-AAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * * ** *
3303663 CGACCGAGAATAAACCATTAGT-A-AAAA-AAAAATGACCGAAATTAAATCATTACTCAAAAAAT
64 TGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
*
3303725 AAAAATGATC-G
128 GAAAATGATCAG
* * ** * * * * * *
3303736 AAATTAAATCATGAGTTTAAAACTGAAAATGATTGGGATTAAACCATGAGTTAGAAAATTAAAAC
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * *
3303801 GACAGGGATTAAACCATGAGTCAGAAAATGAATATGA-CTAAGATGAAACCACCG-GTCAAAAAA
65 GACA-GGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCA-CGAGTCAAAAAA
*
3303864 TGAAAAATGATTAG
127 TG-AAAATGATCAG
* * * *
3303878 GATTAAACTACGAGTCAGAAAATGAAGACAATG---GGGATTAAACCATGAGTTAGAGAAATAAA
1 GATTAAACCATGAGTCAAAAAAT-AA-A-AATGACTGGGATTAAACCATGAGTCAGA-AAATAAA
** * * * * **** * * *
3303940 AATGACCAAAATTAAATCATTAGTCAGAAAATGAAAAGGATGGGAATTAAACCATGAGTTAAAAA
62 AATGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAA
* **
3304005 ATGAAAACGATGGG
126 ATGAAAATGATCAG
* ** * ** *
3304019 GATTAAATCATGAGTCAAAAAATAAAAATGACCAGGATTAAAGCACAAGTCAAAAAATTAAGACA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAA-TAA-A-A
* * * *
3304084 ATG--GGGATTAAACCAGGAGTCAGAGAAATAAAAATGACCAAAATTAAATCACGAGTCAGAAAA
63 ATGACAGGATTAAACCATGAGTCAGA-AAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAA
*
3304147 TGAAAA-CA-CAGG
127 TGAAAATGATCA-G
* ** **
3304159 GATTAAATCATGAGTCAAAAAATAAAAATGACTGAAATTAAACCACAAGTCAGAAAATGAAGACA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAAT-AA-A-A
* * * *
3304224 ATG--GGGATTAAACCATGGGTCAGAGAAATAAAAA-CAACTAAAATTAAATCACGAGTCAAAAA
63 ATGACAGGATTAAACCATGAGTCAGA-AAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAA
*
3304286 ATAAAAATGAT-AG
126 ATGAAAATGATCAG
* * * * * * *
3304299 GAATTAAACCACGAGAT-AGAAAATGAAAACGACTAGGATTAAATCATGAGTCAAAAAATAAAAA
1 G-ATTAAACCATGAG-TCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* * * *
3304363 TGACCAGGATTAAACCTTCAGTCAGAAAATAAAAATGACCTAAATTAAATCACAAGTCAGAAAAT
64 TGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
3304428 GAAAATGATCAG
128 GAAAATGATCAG
* * * *
3304440 GATTAAACCATG-GATCAAAAAATAAAAATGACTGGGATTAAACCATGGGTTAGAAAATGAAAAC
1 GATTAAACCATGAG-TCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * ** * *
3304504 AACCAAGATTAAATCATAAATCAGAAAATGAAAACAACC-AAGATTAAATCATGAGTCAGAAAAT
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAAAAT
* *
3304568 GAAAACGAT-TG
128 GAAAATGATCAG
* * ** * ** * * *
3304579 GTGTTAAATCAAAAGTCAGAGAAATAAAAATGA-TCGAAATTAAATCACGAGTCAGAAAACAAAA
1 G-ATTAAACCATGAGTCA-AAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAA
* * * * * * * ** *
3304643 ATGATC-GGGTGAAACCACGAGTTAGGAAATGAAAATG----AAAGT--AT---GAGTCGGAAAT
63 ATGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAA
*
3304698 TGAAAACGA-CTAG
127 TGAAAATGATC-AG
* * * * * * ** *** * * * **
3304711 GACTAACCCCTGAATGAAAAAATGAAAACCACCATGATTAAACTATGAGTCAAAAAATGAAAGCG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * ** * * * * * *
3304776 ATTAGGACTAAACAACAAGTCAGAAAATGAAAAATGA-TTGAGATTATACCACGAATCAAAAATT
66 A-CAGGATTAAACCATGAGTCAGAAAAT-AAAAATGACCT-AAATTAAATCACGAGTCAAAAAAT
*
3304840 GAAAATGA-CTGG
128 GAAAATGATC-AG
** * * * * * * * *
3304852 GATTAAATTATTAGTCAAAAAATAAAAAAGA-TAGTGATTAAGCAACGTA-TCAAAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATG-AGTCAGAAAATAAAAA
** * * ** * ** **** * ** *
3304915 CAATAGGGATTAAAGCACAAGTCAGAAAATGTAAAACAACGGGGATTAAACCATAAGTCAAAAAG
64 TGACA-GGATTAAACCATGAGTCAGAAAAT-AAAAATGACCTAAATTAAATCACGAGTCAAAAAA
*
3304980 TGAAAATGA-CTG
127 TGAAAATGATCAG
* * * * * * * *** * ** * *
3304992 ACAGTAAACCACGAGTTAAAAAATGAAAA-CAATCAAAATTAGATGACGAGTCAAAAAATAAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * * * *
3305056 TGACCAGCATTAAATCATGAGTCAGAGAAATAAAAAAGA-CTGGAGTCAAATCACGAGTCAGAAA
64 TGA-CAGGATTAAACCATGAGTCAGA-AAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAA
* * *
3305120 ATAAAAATGACCAA
126 ATGAAAATGATCAG
* * * * * * * * * *
3305134 AATTAAATCACGAGTCTAAAACTAAAAATGACAGGTATTAAACTATGAGTCAGAAATTTAAAATG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * * * * *
3305199 GCAGGGATTAAACGATG-GTTAGAAAATGAAAATGACC-AAGATGAAACCACCAATCAAAAAATG
66 ACA-GGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAAAATG
**
3305262 AAAAACAAT-AGG
129 -AAAATGATCA-G
* * * * *
3305274 GATTAAACCACGAGACAGAAAAAGAAGACA--AC-GAGGATTAAACCACGAGTCAGAGAAATAAA
1 GATTAAACCATGAGTCA-AAAAATAA-AAATGACTG-GGATTAAACCATGAGTCAGA-AAATAAA
** * * ** * * **** * *
3305336 AATGACCAAAAGTAAATCACAACTCAGAAAATGAAAATGATGGGAATTAAACCATGAGTCAAAAA
62 AATGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAA
* *
3305401 ATAAAAATGACCAG
126 ATGAAAATGATCAG
* * * * ** * *
3305415 GATTAAATCATGAGTTAGAAAATAAAAACGACCAGGATTAAGCCACGAGTCAGAAAATAAAAATG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * * * * * *
3305480 ACCCA-GATTAAATCATGAGTCAAAAAATGAAAATGA-TTGAGATTAAA-CGATGGGTTAGAAAA
66 A--CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATC-ACGAGTCAAAAAA
* * *
3305542 TAAAAATGACCAA
127 TGAAAATGATCAG
* * * ** * * * *
3305555 GATTAAACCATGGGTTAGAAAAGGAAAATGA-TCGAGATTAAATCATGAGCCAAAAAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* * ** * * * *
3305619 GATCAGTATTAAATCACAAGTTAGAGAAATAAAAATGA-TTGAAATTAAATCATGAGTCAGAAAA
65 GA-CAGGATTAAACCATGAGTCAGA-AAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAAA
*
3305683 TGAAAATGATCAA
127 TGAAAATGATCAG
* * * ** ** * ** * * * *
3305696 GATCAAACCATGAGTTAGGAAACGAAAACGGTAATGAAAATT--ACCA-GAAT--TAAATTACAA
1 GATTAAACCATGAGTCA-AAAAATAAAAATG-ACTG-GGATTAAACCATGAGTCAGAAAATAAAA
* * ** * * * * * * * * * * *
3305756 GTTA-AAAACTAAA-CACGAGTTAAAAAATGAAAATGATCGAAATTAAAGCACAAGTTAGAAAAT
63 ATGACAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
*
3305819 GAAAATGA-CTGG
128 GAAAATGATC-AG
* * * * * ** ** *
3305831 GACTTAATCC-TAAGTGAGAAAATGAAAACCACCAGGATTAAACCACGAGTCA-AAATATGAAAG
1 GA-TTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAA-AT-AAA-
* * * * * * *
3305894 CAAT--C-GAGAATAAACGATGAGTCAGAAAATGAAAAATGATCGAAATTATACCACGAATCAAA
62 -AATGACAG-GATTAAACCATGAGTCAGAAAAT-AAAAATGACCTAAATTAAATCACGAGTCAAA
*** ** * *
3305956 TTTTGAAAAAAACCAA
124 AAATGAAAATGATCAG
* * * * * *
3305972 GATTAAATCATGAGTCAAAAAATAAAAATGACAGGCATTAAATAACA-CA-TC-GAAAAATGAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATT-AA-ACCATGAGTCAG-AAAATAAAA
* * * * * * * * **
3306034 ATGACATAGATTAAAGCACGAGTCAAAAAATGTAAAAT-A-ATAGGGATTAAACCATAAGTCAAA
63 ATGACA-GGATTAAACCATGAGTCAGAAAAT-AAAAATGACCTA--AATTAAATCACGAGTCAAA
*
3306097 AAGTGAAAATGATC-G
124 AAATGAAAATGATCAG
* * *** * * * * * *
3306112 AGATTAAACCATGAATCAAAAAATGAAAATGACTAAAATTAATCTACGAGTCAAAAAATGAAAAG
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * *
3306177 GATC-GACATTAAATCATGAGTCAAAGAAATAAAAATGATCAAAATCAAATCACTAGTCAAAAAA
65 GA-CAG-GATTAAACCATGAGTCAGA-AAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAA
* *
3306241 TGAAAATGACCAA
127 TGAAAATGATCAG
* * * * * **** * * * *
3306254 AATTTAATCACGAGTCAAAAAATAAAAATGGCCAAAATTAAATCATGATTCTA-AAACTGAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTC-AGAAAATAAAAAT
* * * ** * * **
3306318 GACTGAGATTAAACGATGGGTCAGAAAATTTAAATGA--TAGGGATTAAACCACGAGTCAGTAAA
65 GACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTA--AATTAAATCACGAGTCAAAAAA
* * *
3306381 TGAAAATAACCAT
127 TGAAAATGATCAG
* ** * * * *
3306394 GATGAAACCACCAG-CTAGAAAATGAAAA--A-T--GA-T---CCACGAGTCAAAAAATGAAGAC
1 GATTAAACCATGAGTC-AAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAAT-AA-A-
* ** * *
3306449 AATG--GGGATTAAACCACAAGTCAGAGAAATAAAAATGACC-ATAATTAAATCACAAGTCAGAA
62 AATGACAGGATTAAACCATGAGTCAGA-AAATAAAAATGACCTA-AATTAAATCACGAGTCAAAA
* *
3306511 AATGAAAAGGAT-GG
125 AATGAAAATGATCAG
* * ** * * * * *
3306525 GAATTAAACCATGAGTCCAAAAATGAAAACAATTAGGATTAAATCACGAGTCAAAAAATAAAAA-
1 G-ATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * *
3306589 CAGCTGGGATTAAACCACGAGTTAGTAAATAAAAATGACCCAGATTAAATCATGAGTCAAAAAAT
65 GA-C-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
3306654 GAAAATGA-CAGG
128 GAAAATGATCA-G
* * * * * * * * * *
3306666 GATTAAACTATGGGTTAGAAAATACAAATGA-TCGAGATTAAACCATGCGTTAGAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* * ** * * *** ** *
3306730 GACCGAGATTAAATCACAAGTCAAAAAATAAAAATGATCGGTATTAAATCATAAGTCAGAGAAAT
65 GACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCA-AAAAAT
* *
3306795 AAAAATGATCAA
128 GAAAATGATCAG
* * ** * * * * * * *
3306807 AATTAAATCACAAGTCAAAAAATGAAAACGA-TGAAGATTGAACCAAGAGCTAGGAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTG-GGATTAAACCATGAG-T----CA-GAAAAT
* * ** * * * *** *
3306871 AAAAATGAAAATTGCGAGAATTTAATTACGAGTCAGAAAATGAAAATGATCGGGATTAAAAT-GC
59 AAAAATG---A---C-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATT-AAATCAC
* * *
3306935 GAGTTAAAAAATGAAAACGA-CCG
116 GAGTCAAAAAATGAAAATGATCAG
* * * * * * ** * * * *
3306958 AAATTAAAGCACGAGTTAAAAAATGAAAACGACTGGGACAAAACCCTGAGTGAGAAAATGAAAAC
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * *** * * * * *
3307023 CACCATGATTATACCATGAGTCAAAAAAATGAAAGCAATCGAGATTAAATGACGAGTCAGAAAAT
65 GA-CAGGATTAAACCATGAGTC-AGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
3307088 GAAAAATGATC-G
128 G-AAAATGATCAG
* ** * * * * * * *
3307100 AGATTATACCACAAGTTAAAAAATGAAAATGA-TCGGGATTAGATCACGAATCAAAAAATAAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
** * * * *
3307164 TGACAGTGATTAAATAATGCA-TC-GAAAAATGAAAATGA--TAGGGATTAAAGCATGAGTCAAA
64 TGACAG-GATTAAACCATG-AGTCAG-AAAATAAAAATGACCTA--AATTAAATCACGAGTCAAA
* *
3307225 AAATGTAAAATAAT-GG
124 AAATG-AAAATGATCAG
* * * ** * *
3307241 CGATTAAACCATGAGTCAAAAAGTGAAAATGACTGAGATTAAACCACAAGTTAGAAAATGAAAAT
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
** * ** * * * * ** *
3307306 GATTGGAATAAAATGATGAGTGAGAAAATGAAAATCA-TTGGCATTAAATCACAAGTCAAAGAAA
65 GACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAA-AAA
*
3307370 TAAAAATGATC-G
127 TGAAAATGATCAG
* * ** * * * * * * * * *
3307382 GAATCAAATCACAAGTCAGAAAATGAAAATGATTGGGACTAAACCATTAGTAAAAAAATGAAAAC
1 G-ATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * * *
3307447 GACCGAAATTAAATCATGAGTTAGAAAATAAAAATGATCGAAATTAAATCACAAGTCTAAAATTG
65 GACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATG
* * *
3307512 AAAACGACCGG
129 AAAATGATCAG
* * *
3307523 GATTAAACCATGAGTCAAAAAATTAAAATGA-TAGGGATTAAACCAGGAGTCAGAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* ** * * * * * *
3307587 GACCTA-GATGAAACCACAAGTCAGAAAATGAAAAAGGATC-AGGATTAAATCATGAGTTAGAAA
65 GA-C-AGGATTAAACCATGAGTCAGAAAAT-AAAAATGACCTA-AATTAAATCACGAGTCAAAAA
* *
3307650 ATGAAAA-CAACAAG
126 ATGAAAATGATC-AG
* * * * * * * * *
3307664 GATTAAACCACGAGTCAGAGAAATAAAAATGACTAGAATTAAATCATCAGTTAGAAAATGAAAAC
1 GATTAAACCATGAGTCA-AAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * ** * *
3307729 GATAGGAATTAAAGCATGAGTCA-AAAATGAAAATGA-CTGGGATTAAATCACAAGTCAGAAAAT
65 GACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAAAT
* *
3307792 AAAAATGACCAG
128 GAAAATGATCAG
*** * * * *
3307804 GATTAAACCATGAGTTC-AAAAATAAAAATGACCCAGATTAAATCATGAGTTAGAAAATTAAAAC
1 GATTAAACCATGAG-TCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * * *
3307868 GACTGGGATTAAACCATGGGTCAAAAAATAAAAATGA-CTAGGATTAAACCATGGGTTAGAACAA
65 GAC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCA-AAAAA
*
3307932 -GAAAATGAT-TG
127 TGAAAATGATCAG
* * ** * * * * * * ** **
3307943 CGACTAAATCACAAGTTAGAAAATGAAAATGATTGGTACTAAATGACAAGTCAGAGAAATAAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGA-AAATAAAAA
** * * * * * * * *
3308008 TGATCAAAATTAAATCATGAGTCAAAAAATGAAAATGA-GTGAGATTAAACCAAGAGTCAAGAAA
64 TGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAAA
**
3308072 CAAAAATGAT-A-
127 TGAAAATGATCAG
* * * * * * * * *
3308083 -ATGAATATCACGAGTCAAAAAATGAAAATGA-TCAGGATTAAAACGTGAGT-AAAAAATTGAAA
1 GATTAA-ACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAA-TAAAA
* * * * * * * * * * * * *
3308145 ATGACCGAAATTAAAACACGAGTCAAAAAATGAAAATGA--TAGGACTAAA-CCCTAATTGAGAA
63 ATGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCAC-GAGTCAAAA
**
3308207 AATGAAAACCA-CTA-
125 AATGAAAATGATC-AG
* * * **
3308221 GA-TAAA-CA-GACTCAAAAAATGAAAGTG-CATCGGGA-TAAATGATGAGATCA-AAAAT-AAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGAC-T-GGGATTAAACCATGAG-TCAGAAAATAAAA
* * * * * * * * *
3308279 AT-ACCGAGCTTATAACCATAAGTCAAAAAATGAAAATGACC-AGGATTAAATGATGAAATC--A
63 ATGACAG-GATTA-AACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACG-AGTCAAA
* *
3308340 AATTAAAAATGAT-AGG
124 AAATGAAAATGATCA-G
* ** * * * * *
3308356 GATTAAACAACA-CA-TC-TGAAATGAAAACG-CAGGGATTAAGCACA-GA--CA-AAGAGT-AA
1 GATTAAAC--CATGAGTCAAAAAATAAAAATGACTGGGATTAAAC-CATGAGTCAGAA-AATAAA
* * * * * * * *
3308412 AATCAACATGACTTAAACCA-CACGTCAAAAAACTGAAAATGACCCAGATTAAATCATGAGTCAA
62 AAT-GACAGGA-TTAAACCATGA-GTCAGAAAA-TAAAAATGACCTAAATTAAATCACGAGTCAA
* * *
3308476 AAAATGAAAACGACCAA
123 AAAATGAAAATGATCAG
* * ** * * *
3308493 AATCAAATGATGAGTCAAAAAATAAAAATGA-TGGGCATTAAATCACGAGTCAAAGAAATAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGG-ATTAAACCATGAGTCAGA-AAATAAAAA
* * * * * * * * *** * * *
3308557 CGACCGAAATCAAATCATGAGTCAAAAAAT-GAAATGATCGGGATTAAACCACTAGTCAAAAAAC
64 TGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
* *
3308621 AAAAATGA-CTG
128 GAAAATGATCAG
* ** * ** ** ** *
3308632 GAATTAAATCAAAAGTCAAAAGATAAAAATGA-TCGAAATTAATTCATGAGTCTA-AATTTGAAA
1 G-ATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTC-AGAAAATAAAA
* * ** * * * * *
3308695 ACGATCGGGATTAAACCACAAGTCAAAAAATTAAAATGACC-AAGATGAAACCACTAGTCAAAAA
63 ATGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAAA
3308759 ATGACAAAATGATC-G
126 ATG--AAAATGATCAG
* * * * ** * ** *
3308774 TGATTAAGCCATGAATCAAAAAATGAAGACAACGGGGATTAAACCACCAGTCAGAGAAACAAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGA-AAATAAAAA
* * * * * * * *
3308839 TGACCAGAATTAAATCATGAGTAAAAAAATAAAAA--ACATCAGGATTAAATAATGAGTCAAAAA
64 TGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-A-AATTAAATCACGAGTCAAAAA
* ** * *
3308902 ATAAAAACAACCTG
126 ATGAAAATGATCAG
* * * *** * * * * * *
3308916 CATTAAATCATGAGTCAGAAAAATGAAAATGACCAAGATTAAACCAAGGGTCAGAGAATGACAAC
1 GATTAAACCATGAGTCA-AAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * *
3308981 GACAGGATTAAACCAT-AGGTTAGAAAATGAAAACGA-ATGAGATTAAATCATGAGTCAGAAAAT
65 GACAGGATTAAACCATGA-GTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAAAT
*
3309044 GAAAATGAT-TG
128 GAAAATGATCAG
* * * * * * * *** * *
3309055 ATATTAAATCACT-AGTC-AGAAGTGAAAAGGACTGAGATTAAACCCCAAGTCAAAAAATGAAAA
1 -GATTAAACCA-TGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
** ** ** * * *
3309118 TGACTAAAATTAAATGACAAGTCAAAGAAATAAAAATGA-CTAGAATCAAATCACGAGTAAAAAA
64 TGAC-AGGATTAAACCATGAGTCAGA-AAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAA
*
3309182 ATAAAAATGA-CTAG
126 ATGAAAATGATC-AG
** * *** * * **
3309196 GATTAAATAACT-AGTCAAAAAACAAAAATGACTAAAAATAAATCACAAGTCAGAAAATAAAAAT
1 GATTAAACCA-TGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * *
3309260 GATC-GAAATAAAATCATGAGTCTA-AAACTGAAAACGA--TAAGGATTAAACCACCAGTCAAAA
65 GA-CAG-GATTAAACCATGAGTC-AGAAAATAAAAATGACCTAA--ATTAAATCACGAGTCAAAA
*
3309321 AATTAGAAA-GA-CAGG
125 AATGA-AAATGATCA-G
* * ** * * *
3309336 GATTAAACCATAAGT-AAGAAAATGAAAACAACCGTGATGAAACCAAT-AGTCAGAAAATGAAAA
1 GATTAAACCATGAGTCAA-AAAATAAAAATGACTGGGATTAAACC-ATGAGTCAGAAAAT-AAAA
** * * * * ** **** * ** *
3309399 ACAATC-GTGATTAAACCATGAATCAAAAAATGAAGACAACAGGGATTAAACCATAAGTCAGAGA
63 ATGA-CAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCA-AAA
* * *
3309463 AATAAAAATTATTAG
125 AATGAAAATGATCAG
* * * * * * *
3309478 AATT-AACTCATGAGTCAGAAAATAAAAACGA-GGGGAATTAAACCATGACTCAAAAAATGAAAA
1 GATTAAAC-CATGAGTCAAAAAATAAAAATGACTGGG-ATTAAACCATGAGTCAGAAAATAAAAA
* * * * ** * * * *
3309541 TGATTAAGTTTAAATCACAAGTTAGAAAATAAAAAAGATC-AAGATTAAA-CTATGAGTCAAAAA
64 TGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATC-ACGAGTCAAAAA
*
3309604 AGTAAAAATGACTC-G
126 A-TGAAAATGA-TCAG
* * * ** * ** * *
3309619 GATTAAATCACGAGTCAGAAAATGCAAACGACCAGGATTAAACC---A-TCAGAAAATGAAAACG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * * * * * *
3309680 ACTGGGATTAAACCATGGGTTAGAAAATGAAAA-CAACTGAGATTAAATCACAAGTCAGAAAATG
66 AC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAAATG
*
3309744 AAAATGAT-TG
129 AAAATGATCAG
* ** *** * *
3309754 GTATTAAATCACAAGTC-AAAAATAAAAATGA-TCAAAATTAAATCACGAGTCAGAAAACT-AAA
1 G-ATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAA-TAAAA
* * * ** *
3309816 ACGATCAAGATTAAACCATGAGTCAGGAAACAAAAATGATAATGAAAATTAGGAGAATTAAATTA
63 ATGA-CAGGATTAAACCATGAGTCA-G-AA-AATAA--A-AATG--ACCT---A-AATTAAATCA
* *
3309881 TGAGT-AAGAAAATGAAAATGATCGG
115 CGAGTCAA-AAAATGAAAATGATCAG
*** * * ** ** * *
3309906 GATTAAAATGTGAGTTAAAAAATGAAAACA-GTC-GAAATTAAAATAGGAGTCAAAAAATAAAAA
1 GATTAAACCATGAGTCAAAAAAT-AAAA-ATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * * ** * * * *
3309969 TGACTGAGACTAAACCCTGAGTGAGAAAATGAAAACCACC-AGGATTAAAACACAAGTCAGAAAA
64 TGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAAA
* ** * *
3310033 TGATAGCGATTAA
127 TGAAAATGATCAG
* * * * * * * * * *
3310046 GATTAAACGATAAGTCAGAAAATGAAAAACGATTGGGATTATACCATAAGTCAAAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * **** ** *
3310111 GATC-GAGATTAAATCATGAGTCAAAAAATAAAAATGGCAGGGATTAAA-CAATACGTC-AGAAA
65 GA-CAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGA-GTCAAAAAA
3310173 TGAAAATGA-CAGG
127 TGAAAATGATCA-G
* * * * * * * *
3310186 GATTAAAGCACGAGTCAAAAAATGTAAAATAACAGGGATTAAACCATAAATCA-AAAAGTGAAAA
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCATGAGTCAGAAAA-TAAAAA
* * * * * * * * *
3310250 TAGCCAAGATTAAACCATGAGTCAGAAAATGAAAACGATCAAAATTAAATGATGAGTCAAAAAGT
64 T-GACAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
*
3310315 GAAAATGACCAG
128 GAAAATGATCAG
* ** ** * * * ** * * *
3310327 CATTAAGTCACAAGTTAAAAAA-ATAAA--AC--GAAAAAAATCA--AATCA-CAAATCAGAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAAT-A-AAAA
* * * * * * * **
3310384 TGA-A--AAT-GACTAGGA-TTA-AAAATAAAAATGACCAAAATCAAATCAAAAGTCAAAAAATG
64 TGACAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATG
*
3310443 AAAATGAGCAG
129 AAAATGATCAG
** * * **** ** * * * *
3310454 GATTAAACCACAAGTTAAAAAATGAAAATGACCAAAATTAATTCGTGAATCTA-AAACTAAAAAC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTC-AGAAAATAAAAAT
* * * * * * * *
3310518 AACCAAGATTAAACCATGAGTCAGAAGATTAAAATGA--TAGGGATTAAACCATGAGTC--AGAA
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA--AATTAAATCACGAGTCAAAAAA
*
3310579 TGAAAATGA-CTAA
127 TGAAAATGATC-AG
* ** * * *
3310592 GATGAAACCACCAGTCAAAAAATGAAAATGATCAT--GATTAAACCATGAGTCAGAAAATGAAGA
1 GATTAAACCATGAGTCAAAAAATAAAAATGA-C-TGGGATTAAACCATGAGTCAGAAAATAAAAA
** * * * *
3310655 CAACAAGGATTAATCCACGAGTCAGAGAAATAAAAATGACCAAAATTAAATCATGAGTCAAAAAA
64 TGAC-AGGATTAAACCATGAGTCAGA-AAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAA
* *
3310720 TAAAAATGAT-TG
127 TGAAAATGATCAG
** * * ** ** * *
3310732 GAATTAAACCACAAGTCAAAAAATGAAAATGATTGGGATTAAATCACAAAAAGTACCCAGATTAA
1 G-ATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAA-C-C-ATGAGT-CAGAAAATAA
* * * * ** * *
3310797 ACCATGAC----TCAAA--A--AAT-A-AAAAT-GACCTGGA-TTAAATT--GT---GAGTCAAA
61 A-AATGACAGGATTAAACCATGAGTCAGAAAATAAAAAT-GACCTAAATTAAATCACGAGTCAAA
*
3310845 AAATGAAAATGATCGG
124 AAATGAAAATGATCAG
* * ** * * * * * *
3310861 GATTAAACCATGGGTCAGAAAAGGAAAA-CAATCAGGATTAAATCAT-AGGTTAGAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGA-GTCAGAAAATAAAAA
* * * * * *** * * *
3310924 TGATCAAGATTAAATCATAAGTCA-AAATATGAAAATGATCGGTACTAAATCACAAGTCAGAGAA
64 TGA-CAGGATTAAACCATGAGTCAGAAA-ATAAAAATGACCTAAATTAAATCACGAGTCA-AAAA
*
3310988 ATAAAAATGATC-G
126 ATGAAAATGATCAG
* * * * * * * *
3311001 AAATTAAATCATAAGTTAAAAAATGAAAA-CAATCGAGATTAAACCATGAGTCAAGAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTC-----A-G-AAA
* * ** * * * *
3311065 TGATAATGAAAATTACTGGAATTAAATTATGAGTCA-AAAATGAGAATGATC-AAGATTAAAACA
57 --AT-A--AAAATGACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCA
* *
3311128 CGAGTTAAAAAATGAAAACT-ACCAG
115 CGAGTCAAAAAATGAAAA-TGATCAG
* * * * * * * * * * **
3311153 AATTGAAGCACGAGTCAAAAAATGAAAAGGACTGGGATGAAACCCTGAGTGAGAAAATGAAAACC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * *
3311218 ACCAAGATTAAACCATGAGTCAGAAAATAAAAGTGA--TAAGATTAAA-CGATGAGTCAAAAAAT
66 A-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATC-ACGAGTCAAAAAAT
* *
3311280 GAAAAACGATTAG
128 G-AAAATGATCAG
* ** * * * * * * *
3311293 GATTATACCACAAGTCAAAAAATGAAAATGACTAGGATTATACCTTGAGT-AAAAAACTGAAAAC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAA-TAAAAAT
* * * *
3311357 GACTGCGATTAAATCATGAGTCAAAAAATAAAAATGA--TAAGGATTGAA-CAACGCA-TCAAAA
65 GACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAA--ATTAAATC-ACG-AGTCAAAA
3311418 AATGAAAACT-A-CAAG
125 AATGAAAA-TGATC-AG
* * * ** * * ** * *
3311433 GATTAAAGCACGAGTCATAAAATATAAAACAACAGGGATTAAATCACAAGACA-AAAAGTGAAAA
1 GATTAAACCATGAGTCAAAAAATA-AAAATGACTGGGATTAAACCATGAGTCAGAAAA-TAAAAA
* ** *** * *
3311497 TGACCAAGATTAAACCACAAGTCAGAAAATGGGAACGACC-AGAATTAAA-CAACAAGTCAAAAA
64 TGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATC-ACGAGTCAAAAA
3311560 ATGAAAATGA-CTAG
126 ATGAAAATGATC-AG
** * ** * * ** * * * * *
3311574 CTTTAAATCACAAGTCAAAGAAACAAAAAT-AATCGAAATCAAATCACGAGTTAGAAAATGAAAA
1 GATTAAACCATGAGTCAAA-AAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
** * * * * * * *
3311638 TGATTGAAATTAAAACACT-AGTCAAAAAAATGAAAATGATCAAAATTAAATCACGAGTGAAAAA
64 TGACAG-GATTAAACCA-TGAGTC-AGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAA
* *
3311702 ATAAAAATGA-CTAA
126 ATGAAAATGATC-AG
* * * * * * * * * **
3311716 AATTAAATCACGAGTCTAAAATTGAAAATGACTAGGATTAAACCATGAGTCAAAAAATTAAAACA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
** * * * * * * * * * *
3311781 ATTGGATTAAACTACGAGTCAAAAAATGAAAATGACCGAGATGAAACCACCAGTCATAAAATGAA
66 ACAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATG-A
* *
3311846 AAATGATTAT
130 AAATGATCAG
* * *
3311856 GACTAAACCATGGGTCAAAAAATGAAGACAATG---GGGATTAAACCACT-AGTTAGAGAAATAA
1 GATTAAACCATGAGTCAAAAAAT-AA-A-AATGACTGGGATTAAACCA-TGAGTCAGA-AAATAA
* * * * * **** * * *
3311917 AAATGACCAGAATTAAATCACGAGTCAGAAAATGAAAACGATGGGAATTAAACCATGAGTCAGAA
61 AAATGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAA
* *
3311982 AATAAAAATGACCAG
125 AATGAAAATGATCAG
* * *** * * *
3311997 GATTAAACCACGAGTCAGAAAATAAAAATGACTCAAATTAAATCATAAGTCAGAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * * * *
3312062 ACTTGGATCAAACCCTGGGTTC-GAAAATGAAAACGA-CTAAGATTAAATCACGAGTTAAAAAAT
66 AC-AGGATTAAACCATGAG-TCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAAAAT
3312125 GAAAAATGAGT--G
128 G-AAAATGA-TCAG
* * * * * *
3312137 GTATTAAATCACAT--GTCATAGAAATAAAAACGA-TCGAGAATAAAACCATGAGTCAGGAAATG
1 G-ATTAAA-C-CATGAGTCA-AAAAATAAAAATGACT-G-GGATTAAACCATGAGTCAGAAAATA
* * * ** * * * ** * *
3312199 AAAACGATA--ATGAAAATTATCGAAATTA-AATTATGTGTCAGAAAATGA-AAAAGATTGGGAT
60 AAAATGACAGGAT-TAAACCAT-G-AGTCAGAA--A---AT-A-AAAATGACCTAA-ATT--AAA
* * * *
3312260 TAAAATGTGAGTTAAAAATTGAAAATGATCAG
112 T-CAC---GAGTCAAAAAATGAAAATGATCAG
* ** * * * * * * * *
3312292 AATTAATGCACGAGTTAGAAAATGAAAACGACTGGGACTAAAGCC-TGAGTGAGAAAATGAAAA-
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAA-CCATGAGTCAGAAAATAAAAAT
* * *** * * * * *
3312355 GCACTAGGATTAAACCACGAGTCAGAAAATGAAAGCAATCGAGATTAAATGATGAGTCAAAAAAT
65 G-AC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
3312420 GAAAAATGAT-AGG
128 G-AAAATGATCA-G
* ** * * * * ** * *
3312433 GATTATACCACAAGTCAAAAAATGAAAA-CAATGGGGATTAAATCACAAGTCAAAAAATAAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* ** * * * * * *
3312497 GATAGGGATTAAATAATGCA-T-AGGAAAATGAAAA-CA-ATAAGGATTAAAGCATGAGTCAGAA
65 GACA-GGATTAAACCATG-AGTCA-GAAAATAAAAATGACCTAA--ATTAAATCACGAGTCAAAA
** **
3312558 AATGTAAAACAATGGG
125 AATG-AAAATGATCAG
** * * * *** *** * * **
3312574 GATTAAACCACAAGTTAAAAAGTGAAAATGACCAAGATTAAACCGCAAGTCAAAAAATGAAAACA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* ** * * *
3312639 ACTGGAATTAAATGATGAGTCAAAAAATGAAAATGATC-AACATTAAATCACGAGTCAAAGAAAT
66 ACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAA-AAAT
* *
3312703 AAAAACGATC-G
128 GAAAATGATCAG
* * * * * *
3312714 AAATCAAATCATGAGTCAAAAAATGAAAATGA-TCGGGATTAAACCACT-AGTCAAAAAATGAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCA-TGAGTCAGAAAATAAAA
* * * ** * * * *
3312777 ATGA-TGTAATTAAATCACAAG-CAAGAAAATAAAAATGATCGAAATTAAATCATGAGTCTAAAA
63 ATGACAG-GATTAAACCATGAGTC-AGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAA
* *
3312840 CTGAAAATGATCGG
126 ATGAAAATGATCAG
*** * *
3312854 GATTAAACCATGAGTCAAAGAAATAAAAATGAAC-AAAATTAAATCATGAGTCAGAAAATGAAAA
1 GATTAAACCATGAGTCAAA-AAATAAAAATG-ACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * * * *
3312918 TGATAGGAATTAAACCAT-AATCAAAAAATGAAAGTGA-CTAAGATTAAATCACAAGTAAAAAAA
64 TGACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAAAA
* *
3312981 TAAAAATGACCAG
127 TGAAAATGATCAG
* ** * ** *** * * * * * *
3312994 GATTAAGCCATCTGTCAAAATATAAAAACAAAC-AAAATTAGATCACGAGTCAAAAAATGAAAAG
1 GATTAAACCATGAGTCAAAAAATAAAAA-TGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * *
3313058 GACCAGGATTAAACCATGGGTCAG-AAATAAAAAT-A-CTAGGATTAAACCATGGGTTAGAAAAT
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAAAT
** *
3313120 GAAAACAATCAA
128 GAAAATGATCAG
* * * * * * *
3313132 GATTAAATCATGAGTCAAAAAATGAAAATGA-TCAGTATTAAATCATAAGTTAGAGAAATAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGA-AAATAAAAA
** * * ** * ** * * *
3313196 TGATCAAAATTAAATCATGAGTCAAAAAACGAAAA-CAATTGAGATTAAACCATGAGTCAAGAAA
64 TGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTC-----A
*
3313260 CAAAAATGATAATGAAAATTACTAG
122 -AAAAATGAAAATG---A-T-C-AG
* ** * * * * * * * *
3313285 AATTAAATTATGAGTTAGAAAATGAAAATGA-TAAGGATTAAAGCATAAGTTAGAAAATGAAAA-
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * * ** * * ** * *
3313348 CACCA-AATTAAAGCACGAGTCATAAAATGAAAACGA-TTGGGACTAAACCTTGAGTGAGAAAAT
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAAAT
** *
3313411 GAAAACCACCAG
128 GAAAATGATCAG
** * * * ** * * *
3313423 GATTAAACCACAAGTTAGAAAATGAAAGCGA-TGGGATTAAACGATGAGTCAAAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * ** * * * *
3313487 ATCAGGATTAAATCATGAGTCAAAAAATAAAAACAACCAAAATTAAACCATGAGTCAAAAAAAGA
66 A-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATGA
*
3313552 AAGATGACTTA-
130 AA-ATGA-TCAG
* * * * *
3313563 GATTAAATCACA-G-GTCAAAAAATGAAAACGA-TCGAGATTAAACCAT-AGGTTAGAAAATGAA
1 GATTAAA-C-CATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGA-GTCAGAAAATAAA
* * * * * * * * *
3313624 AATGACTGGGATTAAACCATGGGTTAGAAAATGAAAACGATCGAGATTAAATCATGAGTCAAAAA
62 AATGAC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAA
3313689 ATGAAAATGATCAG
126 ATGAAAATGATCAG
* * * * * ** * * * * *
3313703 TATTAATTCACA-G-GTTAGAGAAATAAAAATGATTGAAATTAAATCACGACTTAGAAAATGAAA
1 GATTAA-AC-CATGAGTCA-AAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAA
** * * * * *
3313766 ATGATTGAGATTAAACCACGAGTCA-AGAAATGAGAACAAT-A-GTGAAAATGAAAATGACAGGG
63 ATGACAG-GATTAAACCATGAGTCAGA-AAAT-A-AA-AATGACCT--AAAT-TAAATCAC-GAG
* *** * *
3313828 ATTAAAGCGTGAGTCAAA--A-AAT
119 -TCAAAAAATGA---AAATGATCAG
* * * * * * *
3313850 G-TAAAACAATGGGGATTAAACTACAAGTCAAAAAGTGAAAATGATCGAGATTAAATCATAAGTC
1 GATTAAACCAT-GAG-TCAAA--A-AA-T-AAAAA-TG--ACTG---G-GATTAAACCATGAGTC
* * ** ** * * * * **
3313914 AAAAAATGAAAACAACTAAAATTAAA-CAAGAAGTTAAAAAATGAAAATGA-CTGGCATTAAATC
52 AGAAAATAAAAATGAC-AGGATTAAACCATG-AGTCAGAAAATAAAAATGACCT-AAATTAAATC
* * *
3313977 ATGAGTGAAAGAAAT-AACAATGA-CTAA
114 ACGAGTCAAA-AAATGAA-AATGATC-AG
* * * * * *
3314004 AATTGAATAACA--AGTCAAAAACTGAAAGTGA-TCGAGATTAAACCACT-AGTCA-AAAATTGA
1 GATT-AA-ACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCA-TGAGTCAGAAAA-T--
* * * ** * * *
3314064 AAACAATTGA-A--ATTAAATCATGAGTCAAAAAATAAAAATTACAGAAATGAAATCATGAGTCT
59 AAA-AA-TGACAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCA
* * *
3314126 AAAACTGAAAA-CAACAGG
122 AAAAATGAAAATGATCA-G
* * * ** * * * * * **
3314144 GATTAAACCATGAGTTAGAAAATTAAAACAACAGGGATTAAACCATGTGTTAGAAAATGAAGACA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * *
3314209 ACGGGGATTAAACCATGAGTCAAAGAAATAAAAATGACC-AGAATTAAATCACAAGTCAGAAAAT
66 AC-AGGATTAAACCATGAGTCAGA-AAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAAAT
3314273 GAAAATGA-CTAG
128 GAAAATGATC-AG
* ** * ** ** * * *
3314285 GATTAAATCACAAGTCAGAAAATAAAAACAACCAGGATTAAACCACGAGTCAGAAAATACAAACG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * * ** * * * * *
3314350 ACCTGGATTAAATCATGAGTCAAAAAATAAAAA-CAACTGGGATTAAACCATGGGTTAGAAAATG
66 A-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAAATG
*
3314414 AAAATGA-CTG
129 AAAATGATCAG
* * * * * ** * * * *
3314424 AGATTAAACTATGGGTTAGAAAATGAAAACCACCGAGATTAAATCATGAGTCAAAAAATAAAAAT
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * *
3314489 GATCAGTATTAAATCA-GAAGTCAGAGAAATAAAAATGATCAAAATTAAATCATGAGTCAGAAAA
65 GA-CAGGATTAAACCATG-AGTCAGA-AAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAA
3314553 TGAAAATGAT-AG
127 TGAAAATGATCAG
* ** ** ** * * * *
3314565 GATTAAACCACGAGTCAGGAAACGAAAATGA-T---AACAAA-AATTA-TC--AAAAT-TAAATT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
** ** *
3314621 ACA--ATTCAAAAAATGA-AAATGAAAATGAAAAATGAGTCAAAAAATGAAATTAAATGACGAAA
66 ACAGGATT-AAACCATGAGTCA-GAAAAT-AAAAATGA--C-----CT-AAATTAAAT--C----
*
3314683 TTAAAGCATGAGTCAAAAAATGAAAATGACCAG
114 ----A-C--GAGTCAAAAAATGAAAATGATCAG
* * * * * * * ** * *
3314716 AATTAAAGCACA-AAGTCAGAACATGTAAAA-CAATGGGATTAAATTATAAGTCA-AAAAGTGAA
1 GATTAAA-C-CATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCATGAGTCAGAAAA-TAAA
* * * * *
3314778 AATGATC-GAGATTAAACCATAAGTCAAAAAATGAAAATGACTGGCAAAATTAAA-CAACAAGTC
62 AATGA-CAG-GATTAAACCATGAGTCAGAAAATAAAAATGAC---CTAAATTAAATC-ACGAGTC
3314841 AAAAAATGAAAATGATC-G
121 AAAAAATGAAAATGATCAG
* * * * ** * *
3314859 ACATTTATCACA--AGTCAAAAAA-ATAAATGA-TCGAAATCAAATCATGAGTCA-AACAATGAA
1 -GATTAAAC-CATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAA-AAT-AA
** *
3314919 AAA-GACTTAGG-TTAAACCACT-AGTCA-AAACACGAAAATGACC-ATAATTAAATCATGAGTC
61 AAATGAC--AGGATTAAACCA-TGAGTCAGAAA-ATAAAAATGACCTA-AATTAAATCACGAGTC
*
3314979 AAAAAAT-AACAATGACCA-
121 AAAAAATGAA-AATGATCAG
* * ** * * * * * *
3314997 AATTAAATCACAAGTCTAAAACTGAAAATGACTAGGATTAAACC-TCAAGTTAGAAAATGAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCAT-GAGTCAGAAAAT-AAAAA
* * * * ** * * * * * *
3315061 -GACCGAGATAAAACCACT-AGTTAAAAAATGAAAAACAATCGAGATTAAACCATGAGTCAGAAA
64 TGACAG-GATTAAACCA-TGAGTCAGAAAAT-AAAAATGACCTAAATTAAATCACGAGTCAAAAA
* * *
3315124 ATGAAGA-CA-AAGG
126 ATGAAAATGATCA-G
* * * * * * * ** *
3315137 GAATTAAACCACGACTTAAAGAAATAAACATGACTAGAATTAAATCACAAGTCAGAAAATGAAAA
1 G-ATTAAACCATGAGTCAAA-AAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* ** * * * * ***
3315202 CGATGGGAATTAAACCATGAGTTAGAAATTGAAAAA-GATC-AGGATTAAATTGTGAGTCAAAAA
64 TGACAGG-ATTAAACCATGAGTCAGAAAAT-AAAAATGACCTA-AATTAAATCACGAGTCAAAAA
*
3315265 AT-AGAAACGA-CTAG
126 ATGA-AAATGATC-AG
* ** * * * *
3315279 AATTAAACCATGAGTCAAAAAATAAAAATGACCCGAATTAAATCATGAGTCAGAAAATGAAAAGG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * *** * * *
3315344 ACAAGGATTAAACCAAGGGTCAGAAAATGAAAATGATCGGGATTAAACCATGGGTCAAAAAATGA
66 AC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATGA
*
3315409 AAATGAT-TG
130 AAATGATCAG
* ** ** * * * *
3315418 AAATTAAACCCCGAGTCAGGAAACAAAAATGA-T--AATGAAA--ATTA-TCAG--AAT-----T
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * ** * * *
3315470 -A-A--ATT-----ATGGGTTAGAAAATGAAAATGA-AGAGGATTAAATGCTA-G-TTAAA-AAA
65 GACAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAAT-C-ACGAGTCAAAAAA
* *
3315522 TGAAAA-CAACTAG
127 TGAAAATGATC-AG
* ** * * * * * * *
3315535 AATTAAGGCATAAGTCAGAAAAAAAAAAATGACTGGGACTAAACCTTGAGTGAGAAAATGAAAAC
1 GATTAAACCATGAGTCA-AAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * *** * *** * * *
3315600 CACCAGGATTAAACCATGATTTAGAAAATGAAAGCAATCGGGATTAAATGATGAGTCAGAAAATG
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATG
**
3315665 AAAAATGATTGG
129 -AAAATGATCAG
* * * * * * * * ** * *
3315677 GATTATACTACGAGTCAAAAAATGAAAA-CAATCGAGATTAAATCACAAGTTAAAAAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* **** * * *
3315741 GACAGGA-TAAAACAGTGCA-TCTA-AAAATGAAAAA-GACAGGGATTAAATCACGA-ACCAGAA
65 GACAGGATTAAACCA-TG-AGTC-AGAAAAT-AAAAATGACCTAAATTAAATCACGAGTCAAAAA
* * *
3315801 ATGTAAAATAATAAT
126 ATG-AAAATGATCAG
** * * * ** ** * *
3315816 GATTAAACCACAAGTCAACAAGTGAAAATGA-TCAAGATTAAACCACAAGTTAGAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * *** *
3315880 GACCAGAATTAAACAACGAGTCAAAAAATGAAAATGACCGGCATTAAATCACAAGTCAAAGAAAT
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAA-AAAT
*
3315945 -AAACATGA-CTG
128 GAAA-ATGATCAG
* * ** * * ** * *
3315956 GAATCAAATCACAAGTCATAAAATGAAAATGACCAGGATTAAACCACT-AGTCAAAAAATGAAAA
1 G-ATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCA-TGAGTCAGAAAATAAAAA
* * * * * * *
3316020 CGATC-GAAATTAAATCATGAGTCAAAAAATAAAAATGACCAAAATTAAATCACGAGTCTAAAAC
64 TGA-CAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAA
** * *
3316084 TGAAAACAACCAA
127 TGAAAATGATCAG
* * ** * * *
3316097 GATTAAACCACGAGTCAAAAAATTAAAACT-ACAAGGACTAAACC-TCGAGCCAGAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAA-TAAAAATGACTGGGATTAAACCAT-GAGTCAGAAAATAAAAA
* * * * * * * * * * *
3316160 TGATC-GAGATGAAACCATCAGTCAAAAAATGAAAAACGATCGATATTAAACCACAAGCCAGAAA
64 TGA-CAG-GATTAAACCATGAGTCAGAAAAT-AAAAATGACCTAAATTAAATCACGAGTCAAAAA
* * *
3316224 ATGAAGATAAT-GG
126 ATGAAAATGATCAG
* * **** * * * *
3316237 AGATTAAACCATGAGTCAGAGAAGTAAAAATGAACCAAAATTAAATCACGAGTTAGAAAATGAAA
1 -GATTAAACCATGAGTCA-AAAAATAAAAATG-ACTGGGATTAAACCATGAGTCAGAAAATAAAA
* * * ** *
3316302 ATGA-TGGAAATTAAACCATG-GTCAAAAAATGAAAACAACC-AAGATTAAATCACAAGTCAAAA
63 ATGACAGG--ATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAA
* * *
3316364 AATAAAAAAG-GCTAG
125 AATGAAAATGATC-AG
* ** * ** * *
3316379 GATTAAACCATAAGTCAAAAAATGAAAAA-GA-TCAAGATGAAACCACCAATCAAAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACT-GGGATTAAACCATGAGTCAGAAAAT-AAAA
** * * * * *
3316442 ATGATC-GAGATTAAACCACAAGTCAAAAAATGAAAAT-AAC-AAGGATTAAACCATGAGTTAGA
63 ATGA-CAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAA--ATTAAATCACGAG-T---
* * *
3316504 GAAATAAAATGAAAATGGTCGG
120 -CAA-AAAATGAAAATGATCAG
* * * * * * ** ** * ** * ** **
3316526 GACTAAACCCTGATTGAGAAAATGAAAACCACTATGATTAAATCACAAGTTAGAAAACGAAAGCG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
*** ** * *
3316591 TTTGGGATT-AA--ATGA--C-G-AGTTAGAAAATG-----AA--AAATGATGAGTCAAAAAATG
66 -ACAGGATTAAACCATGAGTCAGAAAATA-AAAATGACCTAAATTAAATCACGAGTCAAAAAATG
*
3316642 AAAATTATC-G
129 AAAATGATCAG
* * * **** * * * * *
3316652 GCATTAAATCACGAGTCAAAGAAATTAAAATGACCAAAATCAAATCACGAGTCAAAAAATTAAAA
1 G-ATTAAACCATGAGTCAAA-AAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * * *
3316717 TGACTGGATTAAACCACT-AGTGA-AAAATGAAAATGATC-AGAATTAAATTAC-AGTCAGAAAA
64 TGACAGGATTAAACCA-TGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAAA
*
3316778 TAAAAATGATC-G
127 TGAAAATGATCAG
* * * * * ** *
3316790 AAATTAAATCATGAGTCTCTAAAACT-GAAATGACTACGATTAAACCATGAGTCAGAAAATTAAA
1 -GATTAAACCATGAG--TCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAA
* * * * * * * * * *
3316854 ATGACAGGGATT-AACCATGAGTTAGAAATTGAAAATGATCGAGAA-AAAACCACCAGT-TAAGA
63 ATGACA-GGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAA
*
3316916 ATGAAAATGATCGG
126 ATGAAAATGATCAG
* * * * * * ** *
3316930 GATTAAATCACGAGTTAGAAAATGAAGACAACAT-GGATTAAACCATGAGTCAGAGAAGTAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGAC-TGGGATTAAACCATGAGTCAGA-AAATAAAAA
* ** * * * **** * * * *
3316994 TAACAATAATTAAATCATGAGTCAAAAAATGAAAATGATGGGAATTAAACCATGAGTTAGAAAAT
64 TGAC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
* *
3317059 AAAAATGACCAG
128 GAAAATGATCAG
* * * * *
3317071 GATTAAATCATGAGTTAGAAAATAAAAACGACTAGGATTAAACCACT-AGTCAGAAAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCA-TGAGTCAGAAAATAAAAAT
* * * * * ** * * * *
3317135 GACCCA-GATAAAATCACGAGTTAGAAAATGAAAATGGTC-AAGATTAAACCATGGGTCAGAAAA
65 GA--CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAAAA
* * *
3317198 CGATAATGA-CCG
127 TGAAAATGATCAG
* * * * * * * * * *
3317210 AGATTAAACTATGGGTTAGAAAATGAAAACGA-TCGTGATTAAATCATGAGTTAGAAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
* ** * ** * * * * * * *
3317274 CGATTGGTATTAAATCACAAATTAGAGAAATTAAAATGATCAAAATTAAATCAGGAGTCCAAAAA
64 TGACAGG-ATTAAACCATGAGTCAGA-AAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAA
* *
3317339 -CAAAA-GCAAT-TG
127 TGAAAATG--ATCAG
* * * ** ** *
3317351 AGATTAAATCACGAGTCAAGAAATGAAAACGATAATGAAAATTACCT-AAATTAAATTACGAGTC
1 -GATTAAACCATGAGTC-----A--AAAA--AT-A--AAAATGA-CTGGGATTAAACCATGAGTC
* * * * * *
3317415 AGAAAATGAAAATGACTAGGATTAAA--ATGCAAATGAAAAAATGAAAATGACCAAAATTAAATC
52 AGAAAATAAAAATGAC-AGGATTAAACCATG--AGTCAGAAAATAAAAATGACCTAAATTAAATC
* *
3317478 ACGAGTCAAAAAAAGAAAATGGTC--
114 ACGAGTCAAAAAATGAAAATGATCAG
* * * * * ** * * ** * * *
3317502 GAGTCTAAACCGTGATTGAGAAAATAGAAACCACTAGGATTAAATCACAAGTCAAAAAATGAAAG
1 GA-T-TAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* * ** * * *
3317567 CGATCGGGATTAAATGATGAGTTAGAAAATGAAAA--A-C-------GAT----AGTCAAAAAAT
64 TGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
* *
3317618 AAAAATGACCAG
128 GAAAATGATCAG
* * * * * * * * * *
3317630 CATTAAATCACGAGTCAAAGATATAAAAACT-ACTAGAATCAAATCATGAGTCAAAAAATTAAAA
1 GATTAAACCATGAGTCAAA-AAATAAAAA-TGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * *
3317694 TGACCAGGATTAAACCACT-AGCCA-ACAAACAAAAATGA-CTGGAATTAAATCATGAGTCAGAA
64 TGA-CAGGATTAAACCA-TGAGTCAGA-AAATAAAAATGACCT-AAATTAAATCACGAGTCAAAA
* * *
3317756 AATAAAAATGACCAA
125 AATGAAAATGATCAG
* * * * * ** * * * *
3317771 AATTAAATCATGCA-CCTAAAACTAAAAATGACCAGGATTAAACCACGAGTCAAAAAATTAAAAC
1 GATTAAACCATG-AGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * *
3317835 GACAGGGATTAAACCATGAGTCAAAAAATGAAAACGACCAAAATGAAACCACCAGTCAAAAACTA
65 GACA-GGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT-
* *
3317900 AAAAACGATC-G
128 GAAAATGATCAG
* * * * ** * *
3317911 GATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAA-CATGAGTTCAAAGAAATAAAAG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAG-TCAGA-AAATAAAA-
* * * * **
3317975 ATGACCAGAATGT-AATCATGAGTGAAAAAATGAAACAATG---GGAATTAAA-CTACGAGTCAA
63 ATGA-CAGGAT-TAAACCATGAGTCAGAAAAT-AAA-AATGACCTAAATTAAATC-ACGAGTCAA
**
3318035 AAAA-GAAAACAATCAG
123 AAAATGAAAATGATCAG
* * * * * * *
3318051 GCTTAAATCATGAGTCAGAAAATAGAAATGACTAGGG-TTCAACCATGAGTTAGAAATAAAAAAC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAA-ATAAAA-
** * * * * * *** *
3318115 AAAACTTGGATGGAATCC-TAAGTCAGAAAAT-AAAA-GACC-AGGATTTAAA-CTTTAGTC-AG
63 ATGAC-AGGAT-TAAACCATGAGTCAGAAAATAAAAATGACCTA--AATTAAATCACGAGTCAAA
**
3318174 AAATGAAAATGATTGG
124 AAATGAAAATGATCAG
* * * * *** * * * *
3318190 GATTAAA-CATG-GTTAGAAAATGAAAATAACCAAGATTAAATCACGAGTCA-TAAATGAAAAAC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAAT-AAAAAT
* * * * *
3318252 AATC-GGTATTAATCACA--AGTCA-AAGAATAAAAATGATCAAAATTAAATCACGAGTCAAAAT
65 GA-CAGG-ATTAAAC-CATGAGTCAGAA-AATAAAAATGACCTAAATTAAATCACGAGTCAAAAA
**
3318313 ATGAAAACAATC-G
126 ATGAAAATGATCAG
* * ** * * * * * *
3318326 AGACTAAACCATGATTCAGGAAATGAAAATGA-T--AATGAAA--ATTA--CAGGAATTAAATTA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAA--A
* * ** * * ** * * ** * * * *
3318384 CAAGTCAAAAAATAAA-AATGA-TC-GGGATTAAAATGTGAGTTAAAAATGAAAACTATTGAAAT
63 -ATGAC-AGGATTAAACCATGAGTCAGAAAATAAAA-ATGACCT--AAATTAAATC-A-CG--AG
* * * ** *
3318446 TTAAACACGAGTCAAAAAAATGA-
119 TCAAA-A--AATGAAAATGATCAG
* * * * * * * * * *
3318469 AAAT-GACCAGGACT-AAACCCTTAGTGAGAAAATGAAAACTACTAGTG-TTAAAGCATAAGTCA
1 GATTAAACCATGAGTCAAA----AAAT-A-AAAATG------ACT-GGGATTAAACCATGAGTCA
* * * * * * * * ** **** * *
3318531 GAAAATGAAAGTGATCGGGATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAACCATG
53 GAAAATAAAAATGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACG
*
3318596 AGTCAAAGAAAT-AAAGATGACCAG
117 AGTCAAA-AAATGAAA-ATGATCAG
* * * * * * * * * * *
3318620 AATTAAATCATGAGTGAAAAAATGAAAA-CAATGGGAATTAAACTACGAGTCAAAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGG-ATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * *
3318684 AATCAGGATTAAATCATGAGTCAGAAAATAGAAATGA-CTAGGATTAAACCATGAGTTAGAAAAT
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAAAT
** * *
3318748 -AAAAACAACTTG
128 GAAAATGATC-AG
* * * * * ** * * *
3318760 GATGGAATCC-TAAGTCAGAAAATAAAAACGACCAGGATTAAACCTTTAGTCAGAAAATGAAAAT
1 GAT-TAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
** * * * ** *
3318824 GATTGGGATTAAA-CATGGGTTAGAAAATGAAAACAACC-AAGATTAAATCACGAGTCATAAAAT
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAAAAT
**
3318887 GAAAACAATC-G
128 GAAAATGATCAG
* ** *** * * *
3318898 GTATTAAATCACAAGTCAAAGAAATAAAAATGA-TCAAAATTAAATCACGAGTCA-AAATATGAA
1 G-ATTAAACCATGAGTCAAA-AAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAA-ATAAA
** * * * **
3318961 AACAATC-GAGACTAAACCATGATTCAGGAAATGAAAATGATAATGAAAATTACAGGAATTAAAT
62 AATGA-CAG-GATTAAACCATGAGTCA-GAAA--ATAA--A-AATG--ACCT--A--AATTAAAT
* * * * *
3319025 TACAAGTTAAAAAATAAAAATGATCGG
113 CACGAGTCAAAAAATGAAAATGATCAG
*** * * * ** * * *
3319052 GATTAAAATGTGAGT-TAAAAATGAAAACT-ATTGAAATTTAAA-CACGAGTCAAAAAAATGAAA
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGA-TTAAACCATGAGTC-AGAAAATAAAA
* * * * * ** * ** *
3319114 ATGACCAGGACTAAACCCTTAGTGAGAAAATGAAAACT-A-CTAGTGTTAAAGCATAAGTCAGAA
63 ATGA-CAGGATTAAACCATGAGTCAGAAAAT-AAAAATGACCTA-AATTAAATCACGAGTCAAAA
* *
3319177 AATGAAAGTGATCGG
125 AATGAAAATGATCAG
* * * * ** * * *
3319192 GATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAACCATGAGTCAAAGAAATAAAGAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGA-AAATAAAAAT
* * * * * ** ****
3319257 GACCAGAATTAAATCATGAGTGAAAAAATGAAAACAATGGGAATTAAA-CTACGAGTCAAAAAAT
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATC-ACGAGTCAAAAAAT
**
3319321 GAAAACAATCAG
128 GAAAATGATCAG
* * * * *
3319333 GATTAAATCATGAGTCAGAAAATAGAAATGACTAGGATTAAACCATGAGTTAGAAAATAAAACA-
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAA-AT
* * * * * * * *** *
3319397 -ACTTGGATGGAATCC-TAAGTCAGAAAATAAAAACGACC-AGGATTAAACCTTTAGTCAGAAAA
65 GAC-AGGAT-TAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAAA
**
3319459 TGAAAATGATTGG
127 TGAAAATGATCAG
* * * * ** *** * * * * **
3319472 GATTAAA-CATGGGTTAGAAAATGAAAACAACCAAGATTAAATCACGAGTCATAAAATGAAAACA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* ** * * * *
3319536 ATC-GGTATTAAATCACAAGTCAAAGAAATAAAAATGATCAAAATTAAATCACGAGTCAAAATAT
66 A-CAGG-ATTAAACCATGAGTCAGA-AAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
**
3319600 GAAAACAATC-G
128 GAAAATGATCAG
* * ** * * * * * *
3319611 AGACTAAACCATGATTCAGGAAATGAAAATGA-T--AATGAAA--ATTA--CAGGAATTAAATTA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAA--A
* * ** * * ** * * ** * * * *
3319669 CAAGTCAAAAAATAAA-AATGA-TC-GGGATTAAAATGTGAGTTAAAAATGAAAACTATTGAAAT
63 -ATGAC-AGGATTAAACCATGAGTCAGAAAATAAAA-ATGACCT--AAATTAAATC-A-CG--AG
* * * ** *
3319731 TTAAACACGAGTCAAAAAAATGA-
119 TCAAA-A--AATGAAAATGATCAG
* * * * * * * * *
3319754 AAAT-GACCAGGACT-AAACCCTTAGTGAGAAAATGAAAACTACTAGTG-TTAAACCATAAGTCA
1 GATTAAACCATGAGTCAAA----AAAT-A-AAAATG------ACT-GGGATTAAACCATGAGTCA
* * ** ** * * * *
3319816 GAAAATGAAAGTGATTGGGATTAAAAGATGAGTCAGAAAATGAAAAATGACCGAGATTATACCAC
53 GAAAATAAAAATGA-CAGGATTAAACCATGAGTCAGAAAAT-AAAAATGACCTAAATTAAATCAC
*
3319881 GAGTCAAAAAATGAAAATAATC-G
116 GAGTCAAAAAATGAAAATGATCAG
** * * * *
3319904 TGATTAAATTATGAGTCAAAAAATAAAAATGACAGGGATTAAACAATGCA-TCAAAAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATG-AGTCAGAAAATAAAAA
* * * * ** **** * * **
3319968 CGACAGGGATTAAAGCATGAGTCAAAAAATGTAAAACAACAGGGATTAAACCACAAGTCAAAATG
64 TGACA-GGATTAAACCATGAGTCAGAAAAT-AAAAATGACCTAAATTAAATCACGAGTCAAAAAA
* *
3320033 TGAAAATGACCAA
127 TGAAAATGATCAG
* ** **** * * * *
3320046 GATTAAACCATGAGTCAAAAAATGAAAACAACCATAATTAAACAATAAGTCAAAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTC-AGAAAATAAAAAT
* * * ** * * * *
3320111 GACTTGCATTAAATCACAAGTCAAAAAAATAAAAACGACCAAAATCAAATCACGAGTCAAAAAAT
65 GAC-AGGATTAAACCATGAGTC-AGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
*
3320176 GAAAATGAT-GG
128 GAAAATGATCAG
* * * * *
3320187 GAATTAAACCATGAGTCAAAAAATGAAAA-CAATCGGGATTAAATCATGAGTCA-AAAATGAAAA
1 G-ATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
** * ** * * * * *
3320250 CAACTAAGATTAAACCACAAGTTAAAAAATAAAAATGA-CTCGAATTAAAGCATGAGTCAAAAAA
64 TGAC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAAA
* * *
3320314 TGACAACGACCAG
127 TGAAAATGATCAG
* * ** **** * * * **
3320327 GATTAAACCATGGGTC-AGAAATAAAAATGACTAAGATTAAATTGGGGGTTAGAAAATGAAAACA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * * * *
3320391 ATC-GAGATTAAATCATGAGTCAAAAAATGAAAATGATC-AGTATTAAATCACAAGTCAGAGAAA
66 A-CAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCA-AAAAA
* *
3320454 TAAAAATGAT-TG
127 TGAAAATGATCAG
* * * * ** * ** ** *
3320466 ACATTAAATCACGAGTCAGAAAACGAAAAT-AATCAAGATTAAACCACAAGTCA-AGAATTGAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGA-AAAT-AAA
* * * * * * * ** * * *
3320529 ACT-ATA--ATGAAA--ATTA--CTGAAATTAAATTATGAGTCAAAAAATGAAAATGACTGGGAT
62 AATGACAGGATTAAACCATGAGTCAGAAAATAAA-AATGA--C-CTAAAT-TAAATCAC-GAG-T
* * *
3320587 TAAAACATGAGTTAAAAATGAAAACGACCG
120 CAAAA-A--A--TGAAAATG--ATC-A--G
* * ** * * ** * *
3320617 AAATTAAAGCACAAGTCAAAAAATGATAATGTTTGGGATTCAACCACT-AGTCA-AAAAGCAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCA-TGAGTCAGAAAA-TAAAA
*** * * * * *
3320680 ATGGTTGGAATTAAATCATGAGTCAGAAAATAAAAAATGATCGAAATTAAATCATGAGTCTAAAA
63 ATGACAGG-ATTAAACCATGAGTCAGAAAAT-AAAAATGACCTAAATTAAATCACGAGTCAAAAA
* *
3320745 TTGAAAACGATCTA-
126 ATGAAAATGATC-AG
* * * * * **
3320759 GATTAAACCACGAGTC-AGAAATTAAAATGACAGGGATTAAACCACGAGTCA-AAAAT--TGATG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* ** * * * * * *
3320820 A-A-GATGAAACCACCAGTCAGAAAATGAAAAAAGATC-AAGATTAAACCTCGAGTTAGAAAATG
66 ACAGGATTAAACCATGAGTCAGAAAAT-AAAAATGACCTAA-ATTAAATCACGAGTCAAAAAATG
* * *
3320882 AAGA-CAACAGG
129 AAAATGATCA-G
* * * * * * *
3320893 GATTAAACCATGAGTCAGAGACATAAAAATGA-TCAGAATTAAATCATGAGTTAGAAAATGAAAA
1 GATTAAACCATGAGTCA-AAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
** * * * * * *
3320957 TGATGGGAATTAAACCATGAGTTAGAAAATGAAACTGATCTAGATTAAATCATGAGT-AAGAAAA
64 TGACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAA-AAAA
* *
3321021 TAAAAACGA-CTAG
127 TGAAAATGATC-AG
* **** * * * * **
3321034 GATTAAACCATGAGTC-AGAAA-AAAAATGACCCAAATTAAATCACGAGTCAAAAAATGAAAACA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * ** ** * *
3321097 ACCGGGATTAAACCATGGGCCAAAAAATAAAAACAACAGAGATTAAATCACGAGTCAGAAAATGA
66 A-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATGA
* * *
3321162 AGACGAT-TG
130 AAATGATCAG
* * * *** * * *
3321171 GAATTAAACTATAAGTCAAAGAA-AAAAATGA-TCAAAATTAAATCATGAGTCAAAAAACAAAAA
1 G-ATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
* * * ** *
3321234 AGTTC-GAGATTAAACCATGAGTTAGGAAATGATAACGATAATGAAAATTATCAGAATTAAATTA
64 TG-ACAG-GATTAAACCATGAGTCA-GAAA--ATAA--A-AATG---A-CCT-A-AATTAAATCA
** *
3321298 TAAGTCAAAAAATGAAAATGA-CCG
115 CGAGTCAAAAAATGAAAATGATCAG
** * * ** * * * *
3321322 AGATTAAAATACGAGTCAAAAAATGAAAATGACTGGGACCAAACCCTGAGTGAGAAAATGAAAAC
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * ** * *
3321387 CACCAAGATTAAACCACGAGTCAGAAAATGAAAGCGATC-AAGATTAAA-CAACTAGTCAAAAAA
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATC-ACGAGTCAAAAAA
*
3321450 TAAAAAAATGATC-G
127 T--GAAAATGATCAG
* * ** * * * * * * *
3321464 AAATTATACCACAAATCAAAAAATGAAAACGACTGAGATTAAATCACT-AGTCAAAAAATAAAAG
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCA-TGAGTCAGAAAATAAAAA
* * * * * * * *
3321528 TAATAGGGATTAAACAATGCA-TC-GAAAAAAGAAAACGA-CAAAGATTAAAGCACAAGTCAAAA
64 TGACA-GGATTAAACCATG-AGTCAGAAAATA-AAAATGACCTAA-ATTAAATCACGAGTCAAAA
* * *
3321590 AATGTAAAA-CAACGGG
125 AATG-AAAATGATC-AG
* * * * * *
3321606 GATTAAACCATAAGTCAAAAAGTGAAAATGA-TCGAGATTAAACCATGAGTCAAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * ** * * * ** *
3321670 AATTAGAATTAAATGAGGAGTTAAAAAATGGAAATGA-C-AAGCATTAAATCATGAGTCAAAAAA
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA--ATTAAATCACGAGTC-AAAAA
* *
3321733 ATAAAAATGACCAG
126 ATGAAAATGATCAG
* * ** * * * * * * *
3321747 AATCAAATGACGAATTAGAAAATGAAAATGATTGGGATTAAACCACT-AGTCAAAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCA-TGAGTCAGAAAAT--AAA-
* * * * **
3321811 AATCGA-A--ATTAAATCC-CGAGTCAGAAAATAAGAATGACCAAAATTAAATCACAAGTCTCAA
62 AAT-GACAGGATTAAA-CCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAA
* * *
3321872 ACTGAAAACGAGC-G
125 AATGAAAATGATCAG
* * * * ** * * * * *
3321886 AGATTAAAACATAAGTCAGAAAATTAAAATGAAAGGGATTAAATCATGGGTTAGAAAATGAAAAC
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * ** * * * * *
3321951 GACCAAGATGAAACC-TCTAGTCAGAAAATGAAAAACAATC-AGGATTAAACCAAGAGTCAGAAA
65 GA-CAGGATTAAACCAT-GAGTCAGAAAAT-AAAAATGACCTA-AATTAAATCACGAGTCAAAAA
* * *
3322014 ATGAAAA-CAACGGG
126 ATGAAAATGATC-AG
* * * * * * * *
3322028 GATTAAACCACGAGTCAAAGAAATGAAAATTACTAGAATTAAATCACG-GTCAGAAAATGAAAAT
1 GATTAAACCATGAGTCAAA-AAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * *
3322092 GA-TGGAAATTAAACCATGAGTCAAAAAATGAAAAACGATC-ATGATTAAATCATGAATCAAAAA
65 GACAGG--ATTAAACCATGAGTCAGAAAAT-AAAAATGACCTA-AATTAAATCACGAGTCAAAAA
* * *
3322155 ATAAAAATGACCAA
126 ATGAAAATGATCAG
* * * * * * * * * *
3322169 GATTAAACCACGGGTCAAAAAGTAAAAACGA-TCGAATTAAAGCATGAGTCAAAAAATGAAAATA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * * * * * *
3322233 ATCGGGATTAAATTAAATCGTGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCATGGGTCAAA
66 A-CAGG-----ATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAA
* *
3322297 AAATGAAAACGATCAA
124 AAATGAAAATGATCAG
* * * * * ** ** ** *
3322313 GATTAAATCACGAGTCAAAAAATGAAAA-CAATCGATATTAAGTCACAAGTCAAAGAAATAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGA-AAATAAAAA
** * ** * * * * * *
3322377 TGATCAAAATTAAATCACAAGTCAAAAAATGAAAATGATC-ATGATTAAA-CAATGAGTCAAGAA
64 TGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATC-ACGAGTCAAAAA
3322440 ATGAAAATGAT-A-
126 ATGAAAATGATCAG
* * * *
3322452 -ATGAAA--ATTA-TC--AAAAT-TAAAT---T---A-T-----A--AGTCAAAAAATAAAAATG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
*** ** * * * * * * * * *
3322496 ACCGGGATTAAAATGCA--AGTTAAAAAATGAAAATGATCGAAATTAAAGCACGAGTCAAAAATT
66 --ACAGGATTAAA-CCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
* * *
3322559 GAAAA-CAACTG
128 GAAAATGATCAG
* * * * * ** *** * ** * * *
3322570 GTACTAAAACC-TAAGTGAGAAAATGAAAACCACCAAGATCAAACCACAAGTCAAAAAATGAAAG
1 G-A-TTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * ** * *
3322634 CGATCGGGATTAAACGACTG-GTCAAAAAATGAAAAACAACC-AAGATTAGACCACGAGTCAAAA
64 TGA-CAGGATTAAACCA-TGAGTCAGAAAAT-AAAAATGACCTAA-ATTAAATCACGAGTCAAAA
* *
3322697 AATGAAAACGATCGG
125 AATGAAAATGATCAG
* * * * * **
3322712 GATTAAATCATGGGTCAAAAACTAAAAATGA-TAGGGATTAAACAATGTGT-AGGAAAATGGAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCA-GAAAATAAAAA
* * * * ** * * * *
3322775 TGATAGGGATTAAAGCATGAGTAAAAAAATGTAAA--ACAATAAGGATTAAAACACAAGTTAAAA
64 TGACA-GGATTAAACCATGAGTCAGAAAATAAAAATGAC-CTAA--ATTAAATCACGAGTCAAAA
** *
3322838 GGTGAAAATGA-CCG
125 AATGAAAATGATCAG
** **** ** * *
3322852 AGATTAAACCACAAGTCAAAAAATAAAAATGACCAAAATTAAATGATGAG-CGAAAAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTC-AGAAAATAAAAA
* * * * * * *
3322916 TGACTAGCATTAAATCATGAGTCAAAGAAATAAAAATGA-TTGGAATCAAATCACAAGTCAAAAA
64 TGAC-AGGATTAAACCATGAGTCAGA-AAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAA
* *
3322980 AT-CAAATGACCAG
126 ATGAAAATGATCAG
* ** * * * **
3322993 GATTAAACCACT-AG-CAAAAAATGAAAACAACTAGAATTAAATCACAAGTCA-AAATATAAAAA
1 GATTAAACCA-TGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAA-ATAAAAA
** * * * * * * *
3323055 TGACCAAAATTAAATCACGAGTCTA-AAACTAAAAATGATC-AGGATTAAACCATGAGTCAAAAA
64 TGA-CAGGATTAAACCATGAGTC-AGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAA
* *
3323118 ATTAAAACGA-CAAG
126 ATGAAAATGATC-AG
* * * * ** *
3323132 GATTAAACCATGAGTCAAAAAATGAAAACGACCT-TGATGAAACCACCAGTCATAAAATAAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGA-CTGGGATTAAACCATGAGTCAGAAAAT-AAAAA
** * * *** *
3323196 TGATTGGGATTAAACCACGAGTCAAAAAATGAAGACAATG---GGGATTAAA-CTATGAGTCAGA
64 TGA-CAGGATTAAACCATGAGTCAGAAAAT-AA-A-AATGACCTAAATTAAATC-ACGAGTCA-A
* *
3323257 GAAATAAAAATGATCAG
123 AAAATGAAAATGATCAG
* * * * * * * *
3323274 AATTAAATCACGAGTC-AAAAATGAAAATGA-TGGGAATTAAACCACGAGTCAAAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGG-ATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * *
3323337 AATC-GAGATTAAATCACGAGTCAAAAAATAAAAATGACCAAGAATT-AAGCTACGAGTCAAAAA
65 GA-CAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATC-ACGAGTCAAAAA
* *
3323400 ATAAAAATGACCTA-
126 ATGAAAATGATC-AG
* * * * * * * * * ** * *
3323414 GATTAAATCACGAGTTAGAAAATGAAAA-CAATCGAGATTAAATCACAAGTCAAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * *
3323478 GACTGGGATTAAA--ATGCATGTTA-AATAATGAAAATGACCGAAATTAAAGCACTAGTTAGAAA
65 GAC-AGGATTAAACCATG-A-GTCAGAA-AATAAAAATGACCTAAATTAAATCACGAGTCAAAAA
3323540 ATGAAAATGA-CTAG
126 ATGAAAATGATC-AG
* * * * * ** *** * *
3323554 GACTAAACCCTGAGTGAGAAAATGAAAACCACCAAGATTAAGCCACGAGTCAGAAAATGAAAGCA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAAT-AAA--A
* *** * * * ** * * *
3323619 AT--CAAGATTAAATGGTGAGTTAAAAAATGAAAAACGA-CTGGGATTACACCACGAGTCAGAAA
63 ATGACAGGATTAAACCATGAGTCAGAAAAT-AAAAATGACCT-AAATTAAATCACGAGTCAAAAA
* *
3323681 ATCAAAATGATCAA
126 ATGAAAATGATCAG
* ** ** *
3323695 GATTAAATCATGA-TCAAAAAATAAAAATGAAAGGGATTAAAAAAT-ACGTC-GAAATATGAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGA-GTCAGAAA-ATAAAAA
** * * * * * * * * *
3323757 CAATATGGATTAAAGCACGAGTCAAAAAATGTAAAA-CAAC-AAGGATTAAACCACAAGTCAAAA
64 TGACA-GGATTAAACCATGAGTCAGAAAAT-AAAAATGACCTAA--ATTAAATCACGAGTCAAAA
* *
3323820 AGTGAAAATGA-CTG
125 AATGAAAATGATCAG
* *** ** * *
3323834 AGATTAAACCATGAGTCAAAAAATGAAAATGA-TCAAAATTAAAAGATGAGTCAAAAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
** ** * * ** *
3323898 CAATGGGAATTAAACCACGAGTCAGAAAATGAAAACAACC-AAGATTAAATCATGAGTCAAAAAA
64 TGACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAAAA
* * *
3323962 TGAAAACGACCAA
127 TGAAAATGATCAG
* * * * * *** *
3323975 GATTAAGCCA-CAGGTTAGAAAATGAAAATGACCAAGATTAAATCAT-A-TCAGAAAATAAAAAT
1 GATTAAACCATGA-GTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* ** * ** *
3324037 G-CTAGGTATTAAATCACAAGTCAAAAAAATAAAAGATG-CGAAAATTAAATCATGAGTCAGAAA
65 GAC-AGG-ATTAAACCATGAGTC-AGAAAATAAAA-ATGACCTAAATTAAATCACGAGTC---AA
* * *
3324100 AAAATGAAAAAGGTCAT
123 AAAATGAAAATGATCAG
* * ** ** * * * *
3324117 GATTAAACCACGAGTCAAGAAATAAGAAACAATAATGAAAACATCGAAATTAAATTA-CAATAAA
1 GATTAAACCATGAGTC---AAA-AA-ATA-AA-AATG---AC-T-GGGATTAAACCATGAGTCAG
* * * * *
3324181 AAAATGAAAATAATC-GGATTAAA--ATGCAAGTTAG-AAATAAAAATGACCTGGAATTAAAGCT
54 AAAATAAAAATGA-CAGGATTAAACCATG--AGTCAGAAAATAAAAATGACCT-AAATTAAATC-
* **
3324242 ATGAGT-ACAAAAATGAAAATGACTGGG
114 ACGAGTCA-AAAAATGAAAATGA-TCAG
* * * * * ** * * *
3324269 GACTAAACC-TTAGTGAAAACATGAAAACCACCAGGG-TTAAAACCCACGAGTCAAAAAATTGAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGA-CTGGGATT-AAA-CCATGAGTCAGAAAA-T-AA
* * * * * *
3324332 AGCAAT--CAGGA-TAAACGATGAGTCAAAAAATGAAAACATGA-CTAGGATTATACCATGAGTC
61 A--AATGACAGGATTAAACCATGAGTCAGAAAAT-AAAA-ATGACCTA-AATTAAATCACGAGTC
*
3324393 AAAAAATGAAAAT-ACACAG
121 AAAAAATGAAAATGA-TCAG
* * * * * * * *
3324412 G-TTAAATCACGAGTCAAAAAATTAAAATGACAGGGAGTAAACAACA-CA-TCAAAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAAC--CATGAGTCAGAAAATAAAAA
* * * * * ***** * **
3324474 CGACAAGAATTAAAGCATGAGTC-GAAAAATGTAAAATAATGGGGATTAAACCATAAGTCAAAAG
64 TGAC-AGGATTAAACCATGAGTCAG-AAAAT-AAAAATGACCTAAATTAAATCACGAGTCAAAA-
* *
3324538 GA-GAAAATGA-CCG
125 AATGAAAATGATCAG
* * ** * **** ** ** * * *
3324551 AGATTAAACCATAAGTTAGCAAATGAAAACT-ACCAAAATTAAATGACAAGTTAAAAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * * *
3324615 TGACCAGCATTAAATCATGAGTCAAAGAAATAAAAATGA-CTAGAATCAAATCACGAGTTAGAAA
64 TGA-CAGGATTAAACCATGAGTCAGA-AAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAA
*
3324679 ATGAAAATGATCGG
126 ATGAAAATGATCAG
* ** * * ** *
3324693 GATTAAACCACT-AGTCAAAAAATGAAAACAACTAGAATTAAATTATGAGTCAAAAAATAAAAAT
1 GATTAAACCA-TGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * ** ** * ** * * * *
3324757 GACCGAAATTAAATTACAAGCCA-AAAACTAAAAACAACCTAGATTAAA-CTATGAGGCAACAAA
65 GACAG-GATTAAACCATGAGTCAGAAAA-TAAAAATGACCTAAATTAAATC-ACGAGTCAAAAAA
* **
3324820 TTAAAACAAT-AG
127 TGAAAATGATCAG
* * * **** * *
3324832 CGATTAAACCATGAGTCAGAAAATGAAAATGTCCAACATGAAACCACT-AGTTAGAAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCA-TGAGTCAGAAAAT-AAAA
* * *** *
3324896 ACGATC-GAGATTAAACCAT-ACATCAGAAAATGAAGACAATG---GGGATTAAACCACGAGTCA
63 ATGA-CAG-GATTAAACCATGA-GTCAGAAAAT-AA-A-AATGACCTAAATTAAATCACGAGTCA
* *
3324956 AAGAAAT-AAAAGTGACCAA
122 AA-AAATGAAAA-TGATCAG
* * * * * *
3324975 AATTAAATCGTGAGTTAAAAAATTAAAAAAGA-TGGGAATTAAACCACGAGTCAGAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAA-TAAAAATGACTGGG-ATTAAACCATGAGTCAGAAAAT-AAAA
* * * * * * * *
3325039 ATGACTGAGATTAAATCACGAGTCAAAAAATAAAAAAGACC-AAGATTAAACCATGAGTCAGAAA
63 ATGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAAA
* *
3325103 ATAAAAATGACCCA-
126 ATGAAAATGA-TCAG
* * * ** * * * *
3325117 GATTAAATC-TCGAGTCAAAAAATGAAAACGACCAGGATTTAACTATGGGTCAAAAAATAAAAAA
1 GATTAAACCAT-GAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAAT-AAAAA
* * * * * * * **
3325181 TGATCGGGATTAAACCATGGGTTAGAAAATTAAAACGACCGAGATTAAATCATAAGTCAAAAAAG
64 TGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAA-
*
3325246 TGAAAACGATCAG
127 TGAAAATGATCAG
* * ** * * ** * * *
3325259 TATTAAATCACAAGTTAGAGAAATAAAAATGA-TCGAAATTAAATCATAAGTCAGAAAATGAAAA
1 GATTAAACCATGAGTCA-AAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
* * * *
3325323 CGATC-GAGATTAAACCATGAGTCAGGAAACGAAAACAATAATGAAATTACCGAAATTAAATTAC
64 TGA-CAG-GATTAAACCATGAGTC-----A-G--AA-AATAA--AAATGACCTAAATTAAATCAC
**
3325387 GAGT-AAGAAAATGAAAATGGCCAG
116 GAGTCAA-AAAATGAAAATGATCAG
* * * ** * * *
3325411 GATTAAA--ATGGAGTTAAAATATGAAAATGA-TCGAAATTAAAGCATGAGTTAGAAAATGAAAA
1 GATTAAACCAT-GAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * * * ** * * *
3325473 TGAGAGGGACTAAACCCTAATTGAGAAAAT-AAAACCACC-AAGATTAAA-CGATGAGTTAGAAA
64 TGACA-GGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATC-ACGAGTCAAAAA
* **
3325535 AT-AAAAGCGATTGG
126 ATGAAAA-TGATCAG
* ** ** * ** ** *
3325549 GAATAAATGACAAGTCAAAAAATGAAAGACAACTGGGA-TAATACCACAAGTCAAAAAATAAAAA
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAA-ACCATGAGTCAGAAAATAAAAA
* * * *
3325613 TGATC-GAGATTAAATCATGAGTTAAAAAATAAAAATGA--TAGGGATTAAA-CAAC-ATGTCAA
64 TGA-CAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTA--AATTAAATC-ACGA-GTCAA
*
3325673 AAAATGAAATTGA-CAAG
123 AAAATGAAAATGATC-AG
* * * ** ** ** **
3325690 GATTAAAGCATAAGT-AAGAAAATGTAAAACAACAAGGATTAAACCACAAGTCA-AAAAGGGAAA
1 GATTAAACCATGAGTCAA-AAAAT-AAAAATGACTGGGATTAAACCATGAGTCAGAAAA-TAAAA
* ** * * *
3325753 ATGACCGAGATTAAACCACAAGTCAGAAAACAAAAATGACC-AGAATTAAA-CGATGAGCCAAAA
63 ATGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATC-ACGAGTCAAAA
* * *
3325816 AATGAATATGACCAA
125 AATGAAAATGATCAG
* * * * ** * * ** *
3325831 CATTAAATCACGAGTCAAAGAAAT-AAAATGACCGAAATCAAATCACAAGTCA-AAAATGAAAAT
1 GATTAAACCATGAGTCAAA-AAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * *
3325894 GATTAGGATTAAACCACT-AGTCA-AAAATGAAAATGA-TTAGAATTAAATCATGAGTCAGAAAA
65 GA-CAGGATTAAACCA-TGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAAA
*
3325956 TAAAAATGATC-G
127 TGAAAATGATCAG
* * ** * * * * * * *
3325968 AAATTAAATCATGAGTTTAAAATTGAAAATGATTGGGATTAAACCATAAGTCAAAAAATTAAAAC
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
** * * * * ** * * *
3326033 GACAAGGATTAAACCACAAATCA-AAGAATGAAAATGATCGAGGTGAAACCACCAGTCAAAAAAT
65 GAC-AGGATTAAACCATGAGTCAGAA-AATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
*
3326097 GAAAATGGATCGG
128 GAAAAT-GATCAG
** * * * *
3326110 GATTAAACCACAAATCAAAAAATGAAAAT-AATGGGGATTAAACCATAAGTCAGAGAAATAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGA-AAATAAAAA
*** * * * *** * * * *
3326174 TGACCCAACTTAAATCATGAGTCAAAAAATGAAAATGATGGAAATTAAACCATGAGTTAGAAAAT
64 TGACAGGA-TTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
3326239 GAAAATGA-CTAG
128 GAAAATGATC-AG
* * * * * * *
3326251 GATTAAATCACGAG-CTAGAAAATAAAAAAGACCGAGATTATACCATGAGTCAGAAAATAAAAAT
1 GATTAAACCATGAGTC-AAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * ** * * *
3326315 GACCCA-GATTCAATCA-GAATTCAGAAAATGAAAA-CAACTGGGATTAAA-C-CTAGGTTAGAA
65 GA--CAGGATTAAACCATG-AGTCAGAAAATAAAAATGACCT-AAATTAAATCACGA-GTCAAAA
*
3326375 AATGAAAATGACCAG
125 AATGAAAATGATCAG
* * * * * * * * *
3326390 GATTAAACCATGGGTTAGAAAATAAAAAAGACAGAGATTAAATCATGAGTTAGAAAATGAAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAAT-AAAAAT
* * * * * * * *
3326455 AATTAGGATTAAACCATGGGTCAGAAAATGAAAATGA-CTAGGATTAAA-CTATGGGTTAAAAAA
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATC-ACGAGTCAAAAAA
3326518 TGAAAATGATC-G
127 TGAAAATGATCAG
* * * * * * * * ** *
3326530 CAATTAAATCACGAGTTAGAAAATGAAAATGA-TCGGTATTAAATCACAAG-CTAGGGAAAT-AA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTC-A-GAAAATAAA
** * * * * * * * * *
3326592 AATGATCAAAATTAAATCACGAGTTAAAAAATGAAAATGA-TTAAGATTAAACCACAAGTCAGAA
62 AATGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAA
* *
3326656 AATGAAAACGATAATG
125 AATGAAAATGATCA-G
* ** * * * *
3326672 AAAATTATCAGAATAAATTACGAGTTAGAAAATGAAAATGACTGGGATTAAA--ATGCGAGTTTA
1 --GA-T-T-A-AA-CCA-T--GAGTCAAAAAATAAAAATGACTGGGATTAAACCAT--GAG-TCA
* ** * * * * ** * *
3326735 -AAAATGAAAATGACCAAAATTAAAGCACGAGTCAGAAAATGAAAACGA-CTGGGACTAAA-CCC
53 GAAAATAAAAATGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCAC
* * * ** *
3326797 TGAATGAGAAAATGAAAACCACCAG
116 -GAGTCAAAAAATGAAAATGATCAG
* * * * * * * * *
3326822 TATCAATCCATGAGTCAAAAAATGAAAGTGA-TCGAGATTGAACAATGAGCCAGAAAATGAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAAT-AAAAA
** * * * * * * *
3326886 TGATTGGGATTATACCATGAGTCAAAAAATGAAAACGA-TTGAGATTAAATCATGAGTCAAAAAA
64 TGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAAA
*
3326950 T-ACAAATGATAAG
127 TGA-AAATGATCAG
* * ** ** *
3326963 GATTAAACAACAT--GTC-AGAAATGAAAATGACAAGGATTAAAGTATGAGTCAAAAAATGTAAA
1 GATTAAAC--CATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAA--T-AA
* * * * *
3327025 ACAAT-A-AGGATTAAA--TTGCAAGTCA-AAAACTAAAAATGAACGAGATTAAACCACGAGTCA
61 A-AATGACAGGATTAAACCATG--AGTCAGAAAA-TAAAAATGACCTAAATTAAATCACGAGTCA
* ** * *
3327085 GAAAATGAAAACAACCAA
122 AAAAATGAAAATGATCAG
* * * * * * *
3327103 AATTAAACAACGAGTCAAAAAATGAAAATGACCGGTG-TTAAATCATGAGTCAAAGAAATAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGG-GATTAAACCATGAGTCAGA-AAATAAAAA
** * ** * * * * * * * * *
3327167 TGACCAAAATCAAATTATAAGTCAGATAATGAAAATGATCGAGATTAAATCACTACTCAAAAAAC
64 TGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
*
3327232 AAAAATGA-CTAG
128 GAAAATGATC-AG
* ** * * * **** *
3327244 AATTAAATTATGAGTTAGAAAATATAAATGACCAAAATTAAATCATGAGT--GTAAAACTAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAG-AAAA-TAAAAA
** * * * ** **** * *
3327307 TGATTGAGATTAAACCACGAGTCAAAAAATTAAAACAACAGGGATTAAACCATGAGTC-AAAAAT
64 TGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
* ** *
3327371 GAAAACGGCCAA
128 GAAAATGATCAG
* * * * * * * * * * *
3327383 GATGAAACCGCT-ACTTAGAAAATGAAAAATGA-TCAGGACTAAACCACGAGTCAAAAAATGAAG
1 GATTAAACC-ATGAGTCAAAAAAT-AAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAA
** * * *
3327446 ACCACAGGGATTAAACCATTAGTCAGAGAAATAAAAATGA-CTAGAATTAAATCATGAGTCAGAA
63 ATGACA-GGATTAAACCATGAGTCAGA-AAATAAAAATGACCTA-AATTAAATCACGAGTCAAAA
**
3327510 AATGAAAACAAT--G
125 AATGAAAATGATCAG
* *** *
3327523 GAAATTAAACCATGAGTCAAAAAATGAAAATGACCATGATTAAATCGCA--AGTCAAAAAATAAA
1 G--ATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAA-C-CATGAGTCAGAAAATAAA
* ** * * *
3327586 AAGGAACAGGATTAAACCACAAGTCA-AAAA-ATAAATGGCCTAAATTAAATCACGAGTCATAAA
62 AATG-ACAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAA
* *
3327649 ATGAAAACGA-CTG
126 ATGAAAATGATCAG
* * * * * * *
3327662 AGATT-AATCATAAGTC-AAAAATAAAAATGA-TAAGGATTAAACAACGCGTCA-AAAATGGAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAAT-AAAA
* * * * * * * * *** *
3327723 ATTATAGAAATTAAAGCACGAGTCAAAAAATGTAAAAT-A-ATGGGGTTAAA-CACAAGTCAAAA
63 ATGACAG-GATTAAACCATGAGTCAGAAAAT-AAAAATGACCT-AAATTAAATCACGAGTCAAAA
* *
3327785 AGTGAAAATGA-CCG
125 AATGAAAATGATCAG
* *** * * *
3327799 AGATTAAACCATGAGTCAAAAAATCAAAATGA-TCAAAATTAAACAATGAGTCAAAAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * * * * *
3327863 TGATTAGCATTAAATCACGAGTCAAAAAAATAAAAATGACC-AGAATCAAATCATGAGTCGAAAA
64 TGA-CAGGATTAAACCATGAGTC-AGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAA
*
3327927 ATG-AAATAGATCAA
126 ATGAAAAT-GATCAG
* * * * * ** * ** * *
3327941 GATTAAA-CA--A-TC-GAAACTAAATCACGAGTCAGA-AAAAAAATGA--C-CAAAAT-TAAAT
1 GATTAAACCATGAGTCAAAAAATAAA-AATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * * * * *
3327996 --C---A-T-GA--AT--CT-A-AAACTGAAAATGATCGAGATTAAACCACGAGTTAGAGAATGA
65 GACAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATGA
*
3328048 AAATGA-CCG
130 AAATGATCAG
* ** * * *
3328057 TGATGAAACCACCAGTCAAAAAATGAAAAATGATTGGGATTAAACCACGAGTCAAAAAATGAAGA
1 -GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCATGAGTCAGAAAAT-AA-A
* * * * *
3328122 CAATG--GGGATTAAACCATGAGTCAAAAAAATAAGAATGA-TTGAAATTAAATCACGAGTCAGA
62 -AATGACAGGATTAAACCATGAGTC-AGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAA
* * *
3328184 AAATAAAAATTAT-GG
124 AAATGAAAATGATCAG
** * * * * *
3328199 GAATTAAACCACAAGTCAAAAAATGAAAATGA-TCGAGATTAAATCATGAGTCAAAAAATGAAAA
1 G-ATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * * * * *
3328263 TAACTGAAATTAAACCACGAGTCAAAAAATAAAAATGACC-AGGATTAAATCATGAGTCATAAAA
64 TGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAAA
*
3328327 TGAAAATGA-CCG
127 TGAAAATGATCAG
* * * * * * *
3328339 AGATTAAACTATGGGTCAGAAAATAAAAATGATTGGGATT-AACCATGGGTTAGAAAATGAAAAT
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
** * * *** * *
3328403 GATC-GAGATTAAATAATGAGTCAGAAAATGAAAATGATCGGTATTAAATCACAAGCCAATAAAA
65 GA-CAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAA-AAAA
**
3328467 CAAAAATGATC-G
127 TGAAAATGATCAG
* * * * * * * * * * *
3328479 AAATTAAATCATGAGTCAGAAAATGAAAACGATTGAGATTAAACTATGAATCAGAAAATGATAAT
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * ** * * * *
3328544 GATA--ATGAAA--AT-TGCCA-AAATTAAAATACGAGTTAGAAAATGAAAATGACCAGGATTAA
65 GACAGGATTAAACCATGAGTCAGAAAATAAAA-ATGACCT---AAAT-TAAATCACGA-G-TCAA
*
3328603 AACACCTATTGAAAAATGAAAACAACTAG
123 AA-A---A-TG-AAAATG-----ATC-AG
* * * * * * * * * * * *
3328632 AATTAAAGCACGAGTTAGAAAATGAAAATGACTGAGACTAAACCCTGAGTGAGAAAATGAAAATC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * ** ** * * *
3328697 ACCAGAATTAAACCATGAGTCAAAAAATGAAAGCGGTCGAGATTAAA-CAACGAGTCAGAAAATG
66 A-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATC-ACGAGTCAAAAAATG
*
3328761 AAAAATAATCAG
129 -AAAATGATCAG
* * * * * *
3328773 GATTACACCATTAGTCAAAAAATGAAAATGACTAGGATTAATCACA--AGTTA-AAAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAAC-CATGAGTCAGAAAATAAAAAT
* * * * ** * **** * ** *
3328835 GATAGGGA-TAAATCAACGTGTTGGAAAATGAAAACT-ACAGGGATTAAAGCATAAGTAAAAAAA
65 GACA-GGATTAAA-CCATGAGTCAGAAAAT-AAAAATGACCTAAATTAAATCACGAGTCAAAAAA
* * **
3328898 TTTAAAATAATGGG
127 -TGAAAATGATCAG
* ** * * * *
3328912 GATTGAACCACAAGTCAAAAAGA-GAAAATGA-TAGAGATTAAACCATGAGTCAGCAAATGAAAA
1 GATTAAACCATGAGTCAAAAA-ATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
* * ** * * * * * *
3328975 TGACTGAAATTAAATGATAAGTCAAAAAATGAAAATGATC-AGCATTAAATCACGAGTCAAAGGA
64 TGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAA-AA
* *
3329039 A-GAAAAAAGATTAG
126 ATG-AAAATGATCAG
* * ** * *
3329053 AATTAAATCACAAGTC--AAAATGAAAAATGACTAGGATTGAACCACT-AGTCA-AAAA-AAAAA
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCA-TGAGTCAGAAAATAAAAA
** * * ** * * *
3329113 TGATTGAAATTAAATCACAAGTCAGAAAATAAAAATGACCAAAATTAAATCATGAGTC-TAAAAT
64 TGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
* *
3329177 AAAAATGATCAA
128 GAAAATGATCAG
* * * * * * * * * * * *
3329189 AATTAAATCACGAGTCTAGAACTAAAAATGACTGAGATTAATCTATGAGTTAGAAATTTAAAATG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * * * * * * * *
3329254 ATAGGAATTAAACCACGAGTCAGAGAAA-GAAAATGATCGAGA-TGAATCCACCAATTAGAAAAT
66 ACAGG-ATTAAACCATGAGTCAGA-AAATAAAAATGACCTAAATTAAAT-CACGAGTCAAAAAAT
**
3329317 GAAAAATGATTGG
128 G-AAAATGATCAG
* ** * *
3329330 GATTAAACCATGAGTCAGAAAATGAAGAAA--AC-GAGGATTAAACCACAAGTCAAAGAAAGAAA
1 GATTAAACCATGAGTCAAAAAAT-AA-AAATGACTG-GGATTAAACCATGAGTCAGA-AAATAAA
** * * * * * * * * *
3329392 AATGACCAAAATT-AATCACGAGTCAAAAAATGAAAATGATC-AGTATTAAATCACAAGTTAGAA
62 AATGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAA
* *
3329455 AATAAAAATGA-CTGG
125 AATGAAAATGATC-AG
* ** ** * * * **
3329470 GATTAAACCACGAGTC-AAAAATAAAAACAACTCAGATTAAATCACGAGTCAGAAAATGAAAACC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
** * * * * * * * * * * *
3329534 ATTGGGATTAAACTACGGGTCAAAAAATGAAAACGA-CTAAGATTAAACCATGGGTTAGAAAATG
66 A-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAA-ATTAAATCACGAGTCAAAAAATG
** * *
3329598 AAAACAACCAA
129 AAAATGATCAG
** * * * * * * * * ** * *
3329609 GATTAAATTACGAGTCAGAAAATGAAAACGATTAGTATTAAATCACAAGCCAAAGAAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGA-AAATAAAAAT
** * * * * * * * * * *
3329674 GATCAAAATTCATCCATGAGTTAGAAAATGAAAATGATCGAGATTAAACCATGAGTCAAAAAAAG
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATG
*
3329739 AAAATGATAATAAAAATTACTG
129 AAAATG---------A-T-CAG
* ** * * ** * * * * *
3329761 GAATTTAATTAAGAGTCAGAAAAGGAAAATGA-TCGGGAGTAAAACGTGAGTTAAAAAATGAAAA
1 G-ATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAAT-AAAA
* * * * * * ** ** * * *
3329825 CAAG-CTA-AATTAAAGCACGAGTCAGAAAATGAAAA-CAATTGGGACTAAA-CCCTTAGT-AAG
63 -ATGAC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCAC-GAGTCAA-
** *
3329885 AAAATGAAAACCACCAG
123 AAAATGAAAATGATCAG
* * * * * * *
3329902 TCATAAAATGAAAGCGATCGAGATTAAATATGAGTCAAAAAATGAAAAATGATCAAGATTATACC
1 -GAT----T-AAA-CCAT-GAG-TCAAA-A--AAT--AAAAATG---ACTG----GGATTAAACC
* * * * * * * *
3329967 ACGAGTCA-AACAATGAAAATGATAGGAATTAAATCATAAGTCAAAAAATAGAAATGA--TAGGG
45 ATGAGTCAGAA-AATAAAAATGACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCTA--A
3330029 ATTAAA-CAAC-ACGTCAAAAAATGAAAATGAT-AGG
106 ATTAAATC-ACGA-GTCAAAAAATGAAAATGATCA-G
* * * * * ** * ** * * *
3330063 GATTAAAGCACGAGTTAGAAAATGTAAAACAAC-GGGGTTAAACTTTAATTC-GAAAAGTGAAAA
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCATGAGTCAGAAAA-TAAAAA
* ** * * *
3330126 TGA-AGAAGATTAAACCATGAGTTAGAAAATGCAAATGA-CTGGAATTAAATGATGAGTCAAAAA
64 TGACAG--GATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAA
3330189 ATGAAAATGA-CAAG
126 ATGAAAATGATC-AG
* * * ** * * * * *
3330203 CATTAAATCAAGAGTCAAAGAAATAAAAATGACCAGAATCAAATCACT-AGTTAGAAAATGAAAA
1 GATTAAACCATGAGTCAAA-AAATAAAAATGACTGGGATTAAACCA-TGAGTCAGAAAATAAAAA
* * * *
3330267 TGACCAGGATTAAA-C-TGCTAGTCA-AGAAACAAAAACGA-CTAGAATTAAATCACGAGTTAGA
64 TGA-CAGGATTAAACCATG--AGTCAGA-AAATAAAAATGACCTA-AATTAAATCACGAGTCAAA
* * *
3330328 AAATAAAAATGACCAA
124 AAATGAAAATGATCAG
* * * * * * * * * *
3330344 AATTAAATCATGAGCCTAAAATTGAAAAT-AATCGGGATTAAACCATGTGTCAAAAAATTAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * *
3330408 GACAAGGATTAAACCACGAGTCAGAGAATGAAAATGACCGAGATGAAACCACCAGTCAAAAAATA
65 GAC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT-
*
3330473 AAAAATGATC-G
128 GAAAATGATCAG
* * * * *
3330484 ATATTAAACCACGAGTCAGAAAAAGAAGACA--ACAT-GGATTAAACCATGAGTCAGAGAAATTA
1 -GATTAAACCATGAGTCA-AAAAATAA-AAATGAC-TGGGATTAAACCATGAGTCAGA-AAATAA
* * * * * * *
3330546 AAATGACCAGAATCAAAACATGAGTCAGCAAATAAAAACGACC-AGGATTAAATCATGAGTCAAA
61 AAATGA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAA
* ** * *
3330610 AAA-CAAAAACAACTGG
124 AAATGAAAATGATC-AG
* * * * ** * * *
3330626 GATTAAACAACGAGTTAGAAAATAAAAAATGACCAGGATTAAATCACGAGTCAGAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * * * * * * * *
3330691 AACTACGATTAAACAATGGGTCAAAAAATGAAAA-CAACTAGGATTAAACCATGGGTTAGAAAAT
65 GAC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAAAT
*
3330755 GAAAATGA-CTG
128 GAAAATGATCAG
* ** * * * * * ****
3330766 AGATTAAATCACAAGTTAGAAAATGAAAACGGCCAACATTAAATCCCA--AG-CTAGAGAAATAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAA--CCATGAGTC-AGA-AAATAA
** * * * * * * * * * *
3330828 AAATGATTGAAATTAAATCAAGAGTCAAAAAATAAAAACGATCGAGATTAAACCACAAGTTCAAA
61 AAATGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAG-TCAAA
** *
3330893 AACGAAAACAATAGTGAAAATTACCG
124 AA--ATGA-AA-A-TG---A-T-CAG
* ** * ** * *** * * *
3330919 AAATTAAATTACT-AGTCAAAAAATGAAAATGACCAGGATCAAAATGTGAGTTAAAAAAT-GAAA
1 -GATTAAACCA-TGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * * * * * * *
3330982 TGACCGGTATTGAAGCATGAGTCAAAAAATGAAAATGA-CTAGGACTAAA-CCCTGAGTGAGAAA
64 TGACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCAC-GAGTCAAAAA
3331045 ATGAAAACT-A-CTAG
126 ATGAAAA-TGATC-AG
* * * * *
3331059 GATTAAACCATGAGTCAAAAAATAAAAAAGA-TAGGGATTAAACAATGCGTTAGAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * ** * *
3331123 GATAGGAATTAAAGCACGAGTAAGAAAATGTAAAA-GA-ATGGGGATTAAACCACAAGTCAAAAA
65 GACAGG-ATTAAACCATGAGTCAGAAAAT-AAAAATGACCT--AAATTAAATCACGAGTCAAAAA
* * * *
3331186 GTGAAAATAACCAA
126 ATGAAAATGATCAG
* * * * * *** * * * *
3331200 GATTAAATCATGAATTAGAAAATGAAAATGA-TCAAAATTAAACAACGAGTTCA-AATATGAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAG-TCAGAAAATAAAAA
* * * * * *
3331263 TGATCAGCACTAAATCACGAGTCAAAGAAATAAAAATGA--TAGGAATCAAATCACGAGTCAAAA
64 TGA-CAGGATTAAACCATGAGTCAGA-AAATAAAAATGACCTA--AATTAAATCACGAGTCAAAA
*
3331326 AATGAAAAAGATC-G
125 AATGAAAATGATCAG
* ** * ** * * * *
3331340 AGATTAAACCACT-AGTCAAAAAATGAAAACAATTGAAACTAAATCACGAGTCAAAAAATAAAAA
1 -GATTAAACCA-TGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
** * * * ** * * * *
3331404 TGACCAAAATTAAATCATGAGTCTA-AAACTGAAAACAATCTAGATTAAACCATGAGTCAAAAAA
64 TGA-CAGGATTAAACCATGAGTC-AGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAA
* * * *
3331468 TTACAA-CAACAAG
127 TGAAAATGATC-AG
* * * * * * * * ** * *
3331481 GATTAAACCATGAGTTAGAGAATGAAAATAACCGAGATGAAACCACCAGTCAAAAAATGAAAAAC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAAT-AAAAAT
** * ** ***** * * *
3331546 GATTGGGATTAAACCACT-AGTCAGAAAACAAAAACAATGGGGATTAAACCATGAGTAAGAAAAA
65 GA-CAGGATTAAACCA-TGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCA-AAAAA
* * *
3331610 TAAAAATGACCAA
127 TGAAAATGATCAG
* * * * * ** * *
3331623 AATTAAATCATGAGTTAGAAAATAAAAAAAGA-TGGGAATTAAACCACAAGTCAAAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGG-ATTAAACCATGAGTCAGAAAATAAAAA
* ** * * * *
3331687 TGATC-GAGATTAAATCACAAGTCAAAAAATAGAAATGACCAAAATTAAACCACGAGTCAAAAAA
64 TGA-CAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAA
* ** *
3331751 TAAAAATGGCCAA
127 TGAAAATGATCAG
* ** * * * * * *
3331764 GATTAAATCACAAGTCATAAAATGAAAATGA-TCGAGATTAAACCATGGGTTAGAAAATAAAAAC
1 GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * *
3331828 GATCAGGATT-AACCATGGGTTAGAAAATGAAAATGACCGAGATTAAATCATGAGCCAAAAAATG
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATG
3331892 AAAATGATC-G
129 AAAATGATCAG
* ** * * * ** * * *
3331902 GTATTAAATCACAAGCCAATGAAATAAAAATGATTGAAATTAAATCATTAGTGAGAAAATAAAAA
1 G-ATTAAACCATGAGTCAA-AAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
** * * * * *
3331967 TGATC-GAGATTAAACCACAAATCAAAAAATGAAAATGATAATGAAAATTAACAAAATTAAATTA
64 TGA-CAG-GATTAAACCATGAGTC-----A-G-AAA--AT-A--AAAATGACCTAAATTAAATCA
* * * *
3332031 CAAGTTAGAAAATGAAAATGA-CTGG
115 CGAGTCAAAAAATGAAAATGATC-AG
* * * * * * * **
3332056 GACTAAACCCTAAGTGAGAAAATGAAAATCACCAGGATTAAACCATGAGTCAGAAAATGAAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAAT-AAAAAT
* * * * * * * *
3332121 GATCAGGATTACACCACGAGTCAAAAAATAAAAACGA-TTAGGATTAAATCATGAGT-TAAAAAT
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAAAT
*
3332184 -AAAAGAGAT-AGG
128 GAAAA-TGATCA-G
* * * * ** * * *
3332196 GATAAAACAACGTG-CTGGAAAATGAAAACT-A-TAGGGATTAAAGCATGAGTCAAAAAATGTAA
1 GATTAAACCATGAGTC-AAAAAAT-AAAAATGACT-GGGATTAAACCATGAGTCAGAAAA--TAA
* ** * * *
3332258 AACTAT-A-AGGATTGAACCACAAGTCA-AAAAGAGAAAATGA--TAGAGATTAAACCATGAGTC
61 AA--ATGACAGGATTAAACCATGAGTCAGAAAATA-AAAATGACCTA-A-ATTAAATCACGAGTC
** *
3332318 AGCAAATAAAAATGATC-G
121 AAAAAATGAAAATGATCAG
* * * * * ** *
3332336 AAATTAAACGATGAGTCAAAAAATGAAAATGA-TCGGCATTAAATCACAAGTCAAAGAAATAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGA-AAATAAAA
** * * ** * *
3332400 ATGATCAAAATTAAATCATGAGTCAAAAAATAAAAAATGA-CTGGGATTAAACCACTAGTCAAAA
63 ATGA-CAGGATTAAACCATGAGTCAGAAAAT-AAAAATGACCT-AAATTAAATCACGAGTCAAAA
*
3332464 AATTAAAATGATC-G
125 AATGAAAATGATCAG
* * ** * * **** * * * **
3332478 AAATTAAATCACAAGTCAGAAAATAAATATGACCAAAATTAAATCACGAGTC-TAAGGTAAAAAT
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
** * * * * * * *
3332542 GATCAAAATTAAATCACGAGTCTA-AAATTAAAAATGACCGAGATT-AATCCACGAGTTAGAAAA
65 GA-CAGGATTAAACCATGAGTC-AGAAAATAAAAATGACCTAAATTAAAT-CACGAGTCAAAAAA
*
3332605 TTAAAATGA-CAG
127 TGAAAATGATCAG
* * * * * * *
3332617 GAATTAAACCAAGAGTCAGAGAATAAAAACGA-TCGAGATTAATCCATTAGTCAGAAAATGAAAA
1 G-ATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAAT-AAAA
* * * ** * *
3332681 ATGATTAGGATTAAACCATGAGTCAAAAAATGATGAAAACGA---GGATTAAACCACAAGT-AAG
63 ATGA-CAGGATTAAACCATGAGTCAGAAAAT-A--AAAATGACCTAAATTAAATCACGAGTCAA-
** * *
3332742 AGAAACAAAAATGACCAA
123 A-AAATGAAAATGATCAG
* * * * * * ** * * * *
3332760 AATTAAATCACGAATCAGAAAATGAAAACAAC-GAGAATTAAACTATGAGTCAAAAAATAAAAAA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTG-GGATTAAACCATGAGTCAGAAAATAAAAAT
* * ** * *
3332824 GATCGGGATTAAATCACAAGTCAGAGAAAATAAAAATGA-CTAGGATATAAACCACGAGTCAAAA
65 GA-CAGGATTAAACCATGAGTC--AGAAAATAAAAATGACCTA-AAT-TAAATCACGAGTCAAAA
* * *
3332888 AATAAAAACGA-CTTG
125 AATGAAAATGATC-AG
** * * * * * * * *
3332903 GATTAAATTACGAGTCAAAAAATGAAAATGATTGGGATTAAACTATGGGTCAGAAAATGAATACG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * * ** * * * * **
3332968 ATAGAGATTAAACCATGGGTTAGAGAATGAAAACAACCGAGATTAAATTATGAGTCTGAAAATG-
66 ACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATGA
3333032 AAATCGATCAG
130 AAAT-GATCAG
* * * * *** * * ** *
3333043 TATTAAATCATAAG-CTAGAGAAATAAAAATGA-TCAAAATTCAATCACAAGTCAGAAAATGAAA
1 GATTAAACCATGAGTC-A-AAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAA
** * * ** ** *
3333106 ATGATTGAGATTAAAACACGAGTCAGAAAAGGAAAATGATAATAAAAATTTTTGGAATTAAATTA
63 ATGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGA-CCT----A-------AATTAAATCA
* * *
3333171 GGAGTCAGAAAATAAAAAATGA-CTAG
115 CGAGTCAAAAAAT-GAAAATGATC-AG
* * * ** * * *
3333197 GAGTAGAATTCA--AGTTAAAAAA-AGAAAATGACCT-AAATTAAAGCACGAGTCAGAAAATGAA
1 GATTA-AA-CCATGAGTCAAAAAATA-AAAATGA-CTGGGATTAAACCATGAGTCAGAAAATAAA
** *** * * * * * *
3333258 AGCGTTTGGGACTAAACCCTTAGTGAGAAAAT-GAAA--ACC--------A-C-C-AATCAAAAA
62 AATG-ACAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAA
**
3333309 ATGAAAACAATC-G
126 ATGAAAATGATCAG
** ** * ** * * *
3333322 AGATTAAATGATGAGTCAAAAAATGAAAAATGA-TCAAGATTATACCACAAGTCAAAAAATGAAT
1 -GATTAAACCATGAGTCAAAAAAT-AAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAA
* * * * * * *
3333386 ATGATAGGAATTAAATCATAAGTTAAAAAATAGAAATGA-C-AATGATTAAA-CAACGTGTCAAA
63 ATGACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCTAA--ATTAAATC-ACGAGTCAAA
3333448 AAATGAAAATGAT-AGG
124 AAATGAAAATGATCA-G
* * * * ** * * * * *
3333464 GATTAAAACATGAGTTAGAAAATGTAAAACAACAGGGATTAAACTATAAGT-TGAAAAGTGAAAA
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCATGAGTCAGAAAA-TAAAAA
* * * * * * *
3333528 TGA-AGAAGATTAAACCATGAGTTAGAAAATGAAAACGA-CTAGAATTAAATGATGAGTCGAACA
64 TGACAG--GATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAA
*
3333591 ATGAAAATGA-CCG
126 ATGAAAATGATCAG
* * ** * * * * *
3333604 ACATTAAATCATGAGTCAAAGAAATAAAAACAACTAGAATCAAATCATGAGTTAGAAAATAAAAA
1 -GATTAAACCATGAGTCAAA-AAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * *
3333669 TGATCAGGATTAAACTACT-AGTCTAG-AAACAAAAATGA-CTGGAATTAAATCACGAGTTAGAA
64 TGA-CAGGATTAAACCA-TGAGTC-AGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAAA
*
3333731 AATAAAAATGATC-G
125 AATGAAAATGATCAG
* * * * * * * ** * *
3333745 AAATTAAATCATGAGCCTAAAATTGAAAACGACCAGGATTAAACCATGAGCCTA-AAAATTAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTC-AGAAAATAAAAA
* * * * * * * *
3333809 CGACAAAGATTAAACCATGAGTCAGAGAATGAAAATGACCGAGATT-AACCACCAGTCAAAAAAT
64 TGAC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
*
3333873 GAAAAATGATCGG
128 G-AAAATGATCAG
* * * * * ** **
3333886 GATTAAACCATGAGTTAGACAATGAAGACAACAAGGATTAAACCATGAGTCAGAGAAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGA-AAATAAAAAT
* * * * * * * * * * *
3333951 TACCAGAATCAAAACATGAGTCAGAAAATGAAAATGACCGAGATTAAATCATGATTCAGAAAATA
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATG
** * *
3334016 AAAACAACCGG
129 AAAATGATCAG
** * * * * * * **
3334027 GATTAAATAATGAGTC-AAAAATGAAAATGACTAGGATTAAACCATGGGTTAGACAATGAAAACA
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * * * * * *
3334091 ACTAGGATTAAACCATGGGTTAGAAAATGAAAACGA-CTGAGATTAAATCACGAGTTAGAAAATG
66 AC-AGGATTAAACCATGAGTCAGAAAATAAAAATGACCT-AAATTAAATCACGAGTCAAAAAATG
* *
3334155 AAAATGGTCAA
129 AAAATGATCAG
* ** * * ** * * * *
3334166 CATTAAACCACAAG-CTAAAGAAATCAAAATGATTGAAATTAAATCAAGAGTTAGAAAATGAAAA
1 GATTAAACCATGAGTC-AAA-AAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAA
* * * * *
3334230 TGATC-GAGATTAAACCACGAGTTCAAAAATGAAAACAATAATGAAAATTATCGAAATTAAATTA
64 TGA-CAG-GATTAAACCATGAG-TC----A-G--AA-AAT-A--AAAATGACCTAAATTAAATCA
*
3334294 CTAGTCAAAAAATGAAAATGAAAATGACCAG
115 CGAGTCAAAAAATGAAAATG---AT---CAG
* ** ** * * *
3334325 GATCAAA--ATGCGAG-CAAAAAAATAAAAGCGA-TCGATATTAAAGCACGAGTCAAAAAATGAA
1 GATTAAACCAT--GAGTC-AAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAAT-AA
* * * * * ** * * **
3334386 AAA-GACTGGAACTAAACCCTGAGTGAGAAAATGAAAACCA-CTAGGATTAAACCACGAAACAAA
61 AAATGACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAA
* * *
3334449 AAATAAAAATGAACTG
124 AAATGAAAATGATCAG
* * * * * * * * *
3334465 AATTACATCATAAGTCAAAAAATGAAAATGACCGAGATTAAATCATGAGTCAAAAAATAAAAATG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
** * * *
3334530 ATGGGGATTAAACAAT-ATGTCA-AAAATGAAAATGA--TAGGAATTAAAGCACGAGT-AAGAAA
66 A-CAGGATTAAACCATGA-GTCAGAAAATAAAAATGACCTA--AATTAAATCACGAGTCAA-AAA
* **
3334590 ATGTAAAATAATGGG
126 ATG-AAAATGATCAG
** * * * * * * * *
3334605 GATTAAACCACAAGTCAAAAAGTGAAAATGACAGAGATTAAAACGTGAGTCAGAAAGTGAAAATG
1 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
* * ** * * *
3334670 ATCA-AATTAAACAACAATTCA-AAAA-AAAAATGATC-AGCATTAAATCACGAGTCAAATAAAT
66 A-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAA-AAAT
* *
3334731 AAAAATGACCAG
128 GAAAATGATCAG
* * * * * * *
3334743 AATCAAATCATGAGTC-AAAAATGAAAAA-GATTGAGATTAAACCACT-AGTCAAAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAAT-AAAAATGACTGGGATTAAACCA-TGAGTCAGAAAATAAAAA
** * * * * * * * ** *
3334805 CAACCGAAACTAAATCATGACTCAGAAAATGAAAATGACCAAAATTAAATCATAAGTC-TAAAAT
64 TGACAG-GATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAAT
*
3334869 CGAAAAACGATC-G
128 -G-AAAATGATCAG
* * * * *
3334882 AGATTAAACCATGAGTCAGAAAATTACAAAA--ACAGGGATTAAACCATGAGTTAGAGAATGAAA
1 -GATTAAACCATGAGTCA-AAAAATA-AAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAA
* * * * * * *** * *
3334945 TTGACCGAGATAAAACCACT-AGTCAAAAAATGAAAAACGATCGGGATTAAACCACTAGTCAAAA
63 ATGACAG-GATTAAACCA-TGAGTCAGAAAAT-AAAAATGACCTAAATTAAATCACGAGTCAAAA
* *
3335009 AATGAAGA-GAATAAG
125 AATGAAAATG-ATCAG
**** * *
3335024 GATTAAACCATGAGTCAAAAAAATAAAAATGACCAAAATTAAATCATGAGTCAGAAAATAAAAAA
1 GATTAAACCATGAGTC-AAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
** * * * * * *
3335089 GATGGGAATTAAACCACGAGTCAGAAAATGAAAACGATCGAGATTAAATCACGAGTCAAAAAAT-
65 GACAGG-ATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATG
*
3335153 AGAAATGAT-TG
129 A-AAATGATCAG
* * ** * ** * *
3335164 AAATTAAACCACGAGTCAAAAAATAAAAATGACCAGGATTAAATCACAAGTCATAAAATGAAAAT
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAAT
* * * * * * * * * * * *
3335229 GATCGGGATTAAACCATGGGTTAGAAAATGAAAAGGATC-AGGATT-AACCATGGGTTAGAAAAT
65 GA-CAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTA-AATTAAATCACGAGTCAAAAAAT
*
3335292 GAAAATGA-CCG
128 GAAAATGATCAG
* * * * * * *
3335303 AGATTAAATCATGAGTCAAAAAATGAAAACGA-TCGAGATTAAACCTTGAATCAGAAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAATAAAAATGACT-GGGATTAAACCATGAGTCAGAAAATAAAAA
3335367 CAATAATGAA
Statistics
Matches: 23073, Mismatches: 6560, Indels: 4552
0.67 0.19 0.13
Matches are distributed among these distances:
115 1 0.00
116 24 0.00
117 131 0.01
118 25 0.00
119 3 0.00
120 8 0.00
121 6 0.00
122 18 0.00
123 17 0.00
124 11 0.00
125 18 0.00
126 63 0.00
127 206 0.01
128 110 0.00
129 26 0.00
130 52 0.00
131 76 0.00
132 107 0.00
133 86 0.00
134 202 0.01
135 206 0.01
136 271 0.01
137 428 0.02
138 1113 0.05
139 2253 0.10
140 5501 0.24
141 6891 0.30
142 1893 0.08
143 502 0.02
144 203 0.01
145 105 0.00
146 130 0.01
147 130 0.01
148 44 0.00
149 45 0.00
150 187 0.01
151 389 0.02
152 516 0.02
153 543 0.02
154 106 0.00
155 71 0.00
156 38 0.00
157 49 0.00
158 67 0.00
159 97 0.00
160 17 0.00
161 61 0.00
162 12 0.00
163 11 0.00
164 4 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (139 bp):
GATTAAACCATGAGTCAAAAAATAAAAATGACTGGGATTAAACCATGAGTCAGAAAATAAAAATG
ACAGGATTAAACCATGAGTCAGAAAATAAAAATGACCTAAATTAAATCACGAGTCAAAAAATGAA
AATGATCAG
Found at i:3304622 original size:36 final size:35
Alignment explanation
Indices: 3304582--3304649 Score: 100
Period size: 36 Copynumber: 1.9 Consensus size: 35
3304572 ACGATTGGTG
*
3304582 TTAAATCAAAAGTCAGAGAAATAAAAATGATCGAAA
1 TTAAATCAAAAGTCAGA-AAACAAAAATGATCGAAA
**
3304618 TTAAATCACGAGTCAGAAAACAAAAATGATCG
1 TTAAATCAAAAGTCAGAAAACAAAAATGATCG
3304650 GGTGAAACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 14 0.48
36 15 0.52
ACGTcount: A:0.54, C:0.12, G:0.15, T:0.19
Consensus pattern (35 bp):
TTAAATCAAAAGTCAGAAAACAAAAATGATCGAAA
Found at i:3304951 original size:36 final size:34
Alignment explanation
Indices: 3304904--3304985 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 34
3304894 CAACGTATCA
* *
3304904 AAAAATGAAAACAATAGGGATTAAAGCACAAGTC
1 AAAAATGAAAACAACAGGGATTAAACCACAAGTC
* *
3304938 AGAAAATGTAAAACAACGGGGATTAAACCATAAGTC
1 A-AAAATG-AAAACAACAGGGATTAAACCACAAGTC
3304974 AAAAAGTGAAAA
1 AAAAA-TGAAAA
3304986 TGACTGACAG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
34 1 0.02
35 14 0.34
36 26 0.63
ACGTcount: A:0.56, C:0.11, G:0.18, T:0.15
Consensus pattern (34 bp):
AAAAATGAAAACAACAGGGATTAAACCACAAGTC
Found at i:3305455 original size:246 final size:247
Alignment explanation
Indices: 3305064--3305512 Score: 530
Period size: 246 Copynumber: 1.8 Consensus size: 247
3305054 AATGACCAGC
* * *** * *
3305064 ATTAAATCATGAGTCAGAGAAATAAAAAAGACTGGAGTCAAATCACGAGTCAGAAAATAAAAATG
1 ATTAAACCACGAGTCAGAGAAATAAAAAAGACAAAAGTCAAATCACAACTCAGAAAATAAAAATG
* * * * *
3305129 ACCAAAATTAAATCACGAGTCTAAAACTAAAAATGACAGGTATTAAACTATGAGTCAGAAATTTA
66 ACCAAAATTAAACCACGAGTCAAAAAATAAAAATGACAGGTATTAAACTATGAGTCAGAAAATAA
* * * * * *
3305194 AAATGGCAGGGATTAAACGATG-GTTAGAAAATGAAAATGACCAAGATGAAACCACCAATCAAAA
131 AAACGCCAGGGATTAAACCACGAGTCAGAAAATAAAAATGACCAAGATGAAACCACCAATCAAAA
3305258 AATGAAAAACAATAGGGATTAAACCACGAGACAGAAAAAGAAGACAACGAGG
196 AATGAAAAACAATAGGGATTAAACCACGAGACAGAAAAAGAAGACAACGAGG
* *
3305310 ATTAAACCACGAGTCAGAGAAATAAAAATGACCAAAAGT-AAATCACAACTCAGAAAATGAAAAT
1 ATTAAACCACGAGTCAGAGAAATAAAAAAGA-CAAAAGTCAAATCACAACTCAGAAAATAAAAAT
**** * *
3305374 GATGGGAATTAAACCATGAGTCAAAAAATAAAAATGACCAGG-ATTAAA-TCATGAGTTAGAAAA
65 GACCAAAATTAAACCACGAGTCAAAAAATAAAAATGA-CAGGTATTAAACT-ATGAGTCAGAAAA
* * * * ** *
3305437 TAAAAACGACCA-GGATTAAGCCACGAGTCAGAAAATAAAAATGACCCAGATTAAATCATGAGTC
128 TAAAAACG-CCAGGGATTAAACCACGAGTCAGAAAATAAAAATGACCAAGATGAAACCACCAATC
3305501 AAAAAATGAAAA
192 AAAAAATGAAAA
3305513 TGATTGAGAT
Statistics
Matches: 165, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
245 1 0.01
246 112 0.68
247 52 0.32
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.17
Consensus pattern (247 bp):
ATTAAACCACGAGTCAGAGAAATAAAAAAGACAAAAGTCAAATCACAACTCAGAAAATAAAAATG
ACCAAAATTAAACCACGAGTCAAAAAATAAAAATGACAGGTATTAAACTATGAGTCAGAAAATAA
AAACGCCAGGGATTAAACCACGAGTCAGAAAATAAAAATGACCAAGATGAAACCACCAATCAAAA
AATGAAAAACAATAGGGATTAAACCACGAGACAGAAAAAGAAGACAACGAGG
Found at i:3306082 original size:106 final size:105
Alignment explanation
Indices: 3305971--3306281 Score: 285
Period size: 106 Copynumber: 2.9 Consensus size: 105
3305961 AAAAAAACCA
* *
3305971 AGATTAAATCATGAGTCAAAAAATAAAAATGA-C-AGGCATTAAA-TAACACATCGAAAAATGAA
1 AGATTAAATCATGAGTCAAAAAATAAAAATGATCGA-G-ATTAAACCAACA-ATCAAAAAATGAA
* *
3306033 AATGAC-ATAGATTAAAGC-ACGAGTCAAAAAATGTAAAATAATAG
63 AATGACTA-AAATT-AAGCTACGAGTCAAAAAATG-AAAAGAATAG
* * * * * **
3306077 GGATTAAACCATAAGTCAAAAAGTGAAAATGATCGAGATTAAACCATGAATCAAAAAATGAAAAT
1 AGATTAAATCATGAGTCAAAAAATAAAAATGATCGAGATTAAACCAACAATCAAAAAATGAAAAT
* * *
3306142 GACTAAAATTAATCTACGAGTCAAAAAATGAAAAGGATCG
66 GACTAAAATTAAGCTACGAGTCAAAAAATGAAAAGAATAG
* * * * * *
3306182 ACATTAAATCATGAGTCAAAGAAATAAAAATGATCAAAATCAAATC-ACTAGTCAAAAAATGAAA
1 AGATTAAATCATGAGTCAAA-AAATAAAAATGATCGAGATTAAACCAAC-AATCAAAAAATGAAA
* * *
3306246 ATGACCAAAATTTAATC-ACGAGTCAAAAAATAAAAA
64 ATGACTAAAA-TTAAGCTACGAGTCAAAAAATGAAAA
3306282 TGGCCAAAAT
Statistics
Matches: 168, Mismatches: 29, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
105 26 0.15
106 130 0.77
107 11 0.07
108 1 0.01
ACGTcount: A:0.55, C:0.12, G:0.13, T:0.20
Consensus pattern (105 bp):
AGATTAAATCATGAGTCAAAAAATAAAAATGATCGAGATTAAACCAACAATCAAAAAATGAAAAT
GACTAAAATTAAGCTACGAGTCAAAAAATGAAAAGAATAG
Found at i:3306802 original size:36 final size:35
Alignment explanation
Indices: 3306737--3306834 Score: 133
Period size: 36 Copynumber: 2.8 Consensus size: 35
3306727 AACGACCGAG
***
3306737 ATTAAATCACAAGTCAAAAAATAAAAATGATCGGT
1 ATTAAATCACAAGTCAAAAAATAAAAATGATCAAA
* *
3306772 ATTAAATCATAAGTCAGAGAAATAAAAATGATCAAA
1 ATTAAATCACAAGTCA-AAAAATAAAAATGATCAAA
*
3306808 ATTAAATCACAAGTCAAAAAATGAAAA
1 ATTAAATCACAAGTCAAAAAATAAAAA
3306835 CGATGAAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
35 24 0.44
36 30 0.56
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.21
Consensus pattern (35 bp):
ATTAAATCACAAGTCAAAAAATAAAAATGATCAAA
Found at i:3308132 original size:103 final size:103
Alignment explanation
Indices: 3307999--3308185 Score: 241
Period size: 103 Copynumber: 1.8 Consensus size: 103
3307989 CAAGTCAGAG
* ** * *
3307999 AAATAAAAATGATCAAAATTAAATCATGAGTCAAAAAA-TGAAAATGAGTGAGATTAAACCAAGA
1 AAATAAAAATGATCAAAATTAAAACATGAGT-AAAAAATTGAAAATGACCGAAATTAAAACAAGA
*
3308063 GTCAAGAAACAAAAATGATAATGAATATCACGAGTCAAA
65 GTCAAAAAACAAAAATGATAATGAATATCACGAGTCAAA
* ** * *
3308102 AAATGAAAATGATCAGGATTAAAACGTGAGTAAAAAATTGAAAATGACCGAAATTAAAACACGAG
1 AAATAAAAATGATCAAAATTAAAACATGAGTAAAAAATTGAAAATGACCGAAATTAAAACAAGAG
**
3308167 TCAAAAAATGAAAATGATA
66 TCAAAAAACAAAAATGATA
3308186 GGACTAAACC
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
102 6 0.09
103 64 0.91
ACGTcount: A:0.56, C:0.09, G:0.16, T:0.19
Consensus pattern (103 bp):
AAATAAAAATGATCAAAATTAAAACATGAGTAAAAAATTGAAAATGACCGAAATTAAAACAAGAG
TCAAAAAACAAAAATGATAATGAATATCACGAGTCAAA
Found at i:3308146 original size:68 final size:67
Alignment explanation
Indices: 3308003--3308193 Score: 172
Period size: 68 Copynumber: 2.8 Consensus size: 67
3307993 TCAGAGAAAT
* * *
3308003 AAAAATGATCAAAATTAAATCATGAGTCAAAAAATGAAAATGAGT-GAGATTAAACCAAGAGTCA
1 AAAAATGA-C-AAATGAAATCACGAGTCAAAAAATGAAAATGA-TAG-GATTAAAACAAGAGTCA
*
3308067 AGAAAC
62 AAAAAC
* **
3308073 AAAAATGA-TAATGAATATCACGAGTCAAAAAATGAAAATGATCAGGATTAAAACGTGAGT-AAA
1 AAAAATGACAAATGAA-ATCACGAGTCAAAAAATGAAAATGAT-AGGATTAAAACAAGAGTCAAA
*
3308136 AAATT
64 AAA-C
* * * *
3308141 GAAAATGACCGAAATTAAAACACGAGTCAAAAAATGAAAATGATAGGACTAAA
1 AAAAATGA-C-AAATGAAATCACGAGTCAAAAAATGAAAATGATAGGATTAAA
3308194 CCCTAATTGA
Statistics
Matches: 101, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
67 11 0.11
68 43 0.43
69 9 0.09
70 33 0.33
71 5 0.05
ACGTcount: A:0.55, C:0.09, G:0.16, T:0.19
Consensus pattern (67 bp):
AAAAATGACAAATGAAATCACGAGTCAAAAAATGAAAATGATAGGATTAAAACAAGAGTCAAAAA
AC
Found at i:3309130 original size:69 final size:69
Alignment explanation
Indices: 3309033--3309261 Score: 174
Period size: 71 Copynumber: 3.3 Consensus size: 69
3309023 TTAAATCATG
* * * * * * * *
3309033 AGTCAGAAAATGAAAATGATTGATATTAAATCACTAGTCAGAAGTGAAAAGGACT-GAGATTAAA
1 AGTCAAAAAATGAAAATGACTAAAATTAAATAACTAGTCAGAAATAAAAAGGACTAGA-ATCAAA
*
3309097 CCCCA
65 CCACA
* * *
3309102 AGTCAAAAAATGAAAATGACTAAAATTAAATGACAAGTCAAAGAAATAAAAATGACTAGAATCAA
1 AGTCAAAAAATGAAAATGACTAAAATTAAATAACTAGTC--AGAAATAAAAAGGACTAGAATCAA
* *
3309167 ATCACG
64 ACCACA
* * ** * * * *
3309173 AGTAAAAAAATAAAAATGACTAGGATTAAATAACTAGTCAAAAAACAAAAATGACTAAAAAT-AA
1 AGTCAAAAAATGAAAATGACTAAAATTAAATAACTAGTC-AGAAATAAAAAGGACT-AGAATCAA
*
3309237 ATCACA
64 ACCACA
* *
3309243 AGTCAGAAAATAAAAATGA
1 AGTCAAAAAATGAAAATGA
3309262 TCGAAATAAA
Statistics
Matches: 131, Mismatches: 25, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
69 33 0.25
70 39 0.30
71 57 0.44
72 2 0.02
ACGTcount: A:0.56, C:0.11, G:0.14, T:0.19
Consensus pattern (69 bp):
AGTCAAAAAATGAAAATGACTAAAATTAAATAACTAGTCAGAAATAAAAAGGACTAGAATCAAAC
CACA
Found at i:3309669 original size:31 final size:31
Alignment explanation
Indices: 3309633--3309695 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
3309623 AAATCACGAG
*
3309633 TCAGAAAATGCAAACGACCAGGATTAAACCA
1 TCAGAAAATGAAAACGACCAGGATTAAACCA
**
3309664 TCAGAAAATGAAAACGACTGGGATTAAACCA
1 TCAGAAAATGAAAACGACCAGGATTAAACCA
3309695 T
1 T
3309696 GGGTTAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.48, C:0.19, G:0.17, T:0.16
Consensus pattern (31 bp):
TCAGAAAATGAAAACGACCAGGATTAAACCA
Found at i:3309709 original size:172 final size:170
Alignment explanation
Indices: 3309492--3309834 Score: 381
Period size: 172 Copynumber: 2.0 Consensus size: 170
3309482 AACTCATGAG
** * *
3309492 TCAGAAAATAAAAACGAGGGGAATTAAACCATGACTCAAAAAATGAAAATGATTAAGTTTAAATC
1 TCAGAAAATAAAAACGAGGGGAATTAAACCATGACTCAAAAAATGAAAACAACTAAGATTAAATC
* ** *
3309557 ACAAGTTAGAAAATAAAAAAGATCAAG-ATTAAA-CTATGAGTCAAAAAAGTAAAAATGACTC-G
66 ACAAGTCAGAAAATAAAAAAGAT-AAGTATTAAATC-ACAAGTC-AAAAA-TAAAAATGA-TCAA
* * *
3309619 GATTAAATCACGAGTCAGAAAA-TGCAAACGACCAGGATTAAACCA
126 AATTAAATCACGAGTCAGAAAACT-AAAACGACCAAGATTAAACCA
* * ** * * *
3309664 TCAGAAAATGAAAACGACTGGG-ATTAAACCATGGGTTAGAAAATGAAAACAACTGAGATTAAAT
1 TCAGAAAATAAAAACGA-GGGGAATTAAACCATGACTCAAAAAATGAAAACAACTAAGATTAAAT
* * **
3309728 CACAAGTCAGAAAATGAAAATGATTGGTATTAAATCACAAGTCAAAAATAAAAATGATCAAAATT
65 CACAAGTCAGAAAATAAAAAAGATAAGTATTAAATCACAAGTCAAAAATAAAAATGATCAAAATT
*
3309793 AAATCACGAGTCAGAAAACTAAAACGATCAAGATTAAACCA
130 AAATCACGAGTCAGAAAACTAAAACGACCAAGATTAAACCA
3309834 T
1 T
3309835 GAGTCAGGAA
Statistics
Matches: 143, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
169 2 0.01
170 49 0.34
171 7 0.05
172 81 0.57
173 4 0.03
ACGTcount: A:0.52, C:0.13, G:0.15, T:0.20
Consensus pattern (170 bp):
TCAGAAAATAAAAACGAGGGGAATTAAACCATGACTCAAAAAATGAAAACAACTAAGATTAAATC
ACAAGTCAGAAAATAAAAAAGATAAGTATTAAATCACAAGTCAAAAATAAAAATGATCAAAATTA
AATCACGAGTCAGAAAACTAAAACGACCAAGATTAAACCA
Found at i:3310547 original size:20 final size:20
Alignment explanation
Indices: 3310522--3310578 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
3310512 AAAAACAACC
3310522 AAGATTAAACCATGAGTCAG
1 AAGATTAAACCATGAGTCAG
3310542 AAGATTAAA--ATGA-T-AG
1 AAGATTAAACCATGAGTCAG
*
3310558 -GGATTAAACCATGAGTCAG
1 AAGATTAAACCATGAGTCAG
3310577 AA
1 AA
3310579 TGAAAATGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 7 0.23
16 2 0.07
17 5 0.17
18 5 0.17
19 2 0.07
20 9 0.30
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (20 bp):
AAGATTAAACCATGAGTCAG
Found at i:3310812 original size:93 final size:93
Alignment explanation
Indices: 3310699--3310867 Score: 241
Period size: 93 Copynumber: 1.8 Consensus size: 93
3310689 AATGACCAAA
* * *
3310699 ATTAAATCATGAGTCAAAAAATAAAAATGA-TTGGAATTAAACCACAAGTCAAAAAATGAAAATG
1 ATTAAACCATGACTCAAAAAATAAAAATGACCTGG-ATTAAACCACAAGTCAAAAAATGAAAATG
*
3310763 ATTGGGATTAAATCACAAAAAGTACCCAG
65 ATCGGGATTAAATCACAAAAAGTACCCAG
*****
3310792 ATTAAACCATGACTCAAAAAATAAAAATGACCTGGATTAAATTGTGAGTCAAAAAATGAAAATGA
1 ATTAAACCATGACTCAAAAAATAAAAATGACCTGGATTAAACCACAAGTCAAAAAATGAAAATGA
3310857 TCGGGATTAAA
66 TCGGGATTAAA
3310868 CCATGGGTCA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
93 63 0.95
94 3 0.05
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.22
Consensus pattern (93 bp):
ATTAAACCATGACTCAAAAAATAAAAATGACCTGGATTAAACCACAAGTCAAAAAATGAAAATGA
TCGGGATTAAATCACAAAAAGTACCCAG
Found at i:3312091 original size:211 final size:209
Alignment explanation
Indices: 3311662--3312203 Score: 499
Period size: 211 Copynumber: 2.6 Consensus size: 209
3311652 ACACTAGTCA
* * * * *
3311662 AAAAAATGAAAATG-ATCAAAATTAAATCACGAGTGAAAAAATAAAAATGACTAAAATTAAATCA
1 AAAAAATGAAAACGAAT-AAGATTAAACCACGAGTTAAAAAATAAAAATGACTAGAATTAAATCA
* * * * * **
3311726 CGAGTCTAAAATTGAAAATGACTAGG-ATTAAACCATGAGTCAAAAAATTAAAACAATTGGATTA
65 CGAGTC-AAAAATGAAAACGA-TGGGAATTAAACCATGAGTCAGAAAATAAAAACAACAGGATTA
* * * * *
3311790 AACTACGAGTCAAAAAATGAAAATGACCGAGATGAAACCACCAGTCATAAAATGAAAAATGATTA
128 AACCACGAGTCAAAAAATAAAAATGACCGAAATGAAACCACAAGTCAGAAAATGAAAAATGATTA
*
3311855 TGACTAAACCATGGGTC
193 GGACTAAACCATGGGTC
* ** * * *
3311872 AAAAAATGAAGAC-AATGGGGATTAAACCACTAGTTAGAGAAATAAAAATGACCAGAATTAAATC
1 AAAAAATGAAAACGAAT-AAGATTAAACCACGAGTTA-AAAAATAAAAATGACTAGAATTAAATC
* *
3311936 ACGAGTCAGAAAATGAAAACGATGGGAATTAAACCATGAGTCAGAAAATAAAAATGACCAGGATT
64 ACGAGTCA-AAAATGAAAACGATGGGAATTAAACCATGAGTCAGAAAATAAAAA-CAACAGGATT
* * * *
3312001 AAACCACGAGTCAGAAAATAAAAATGACTC-AAATTAAATCATAAGTCAGAAAATG-AAAATGAC
127 AAACCACGAGTCAAAAAATAAAAATGAC-CGAAATGAAACCACAAGTCAGAAAATGAAAAATGA-
*
3312064 TT-GGA-TCAAACCCTGGGTTC
190 TTAGGACT-AAACCATGGG-TC
* * * * * *
3312084 -GAAAATGAAAACGACTAAGATTAAATCACGAGTTAAAAAATGAAAAATGAGTGGTATTAAATCA
1 AAAAAATGAAAACGAATAAGATTAAACCACGAGTTAAAAAAT-AAAAATGACTAGAATTAAATCA
* * * * *
3312148 C-ATGTCATAGAAATAAAAACGATCGAGAATAAAACCATGAGTCAGGAAATGAAAAC
65 CGA-GTCA-A-AAATGAAAACGAT-GGGAATTAAACCATGAGTCAGAAAATAAAAAC
3312204 GATAATGAAA
Statistics
Matches: 267, Mismatches: 51, Indels: 26
0.78 0.15 0.08
Matches are distributed among these distances:
210 37 0.14
211 134 0.50
212 68 0.25
213 28 0.10
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (209 bp):
AAAAAATGAAAACGAATAAGATTAAACCACGAGTTAAAAAATAAAAATGACTAGAATTAAATCAC
GAGTCAAAAATGAAAACGATGGGAATTAAACCATGAGTCAGAAAATAAAAACAACAGGATTAAAC
CACGAGTCAAAAAATAAAAATGACCGAAATGAAACCACAAGTCAGAAAATGAAAAATGATTAGGA
CTAAACCATGGGTC
Found at i:3312473 original size:106 final size:106
Alignment explanation
Indices: 3312361--3312882 Score: 402
Period size: 106 Copynumber: 4.9 Consensus size: 106
3312351 AAAAGCACTA
* * * * * * *
3312361 GGATTAAACCACGAGTCAGAAAATGAAAGCAATCGAGATTAAATGATGAGTCAAAAAATGAAAAA
1 GGATTAAATCACAAGTCAAAAAATAAAAACGATCGAGATTAAATCATGAGTCAAAAAATGAAAAA
* **
3312426 TGATAGGGATTATACCACAAGTCAAAAAATGAAAACAATGG
66 TGATAGGGATTAAACCATGAGTCAAAAAATGAAAACAATGG
* * * * *
3312467 GGATTAAATCACAAGTCAAAAAATAAAAAAGATAGGGATTAAATAATGCA-T-AGGAAAATGAAA
1 GGATTAAATCACAAGTCAAAAAATAAAAACGATCGAGATTAAATCATG-AGTCA-AAAAATGAAA
* * *
3312530 ACA--ATAAGGATTAAAGCATGAGTCAGAAAATGTAAAACAATGG
64 A-ATGATAGGGATTAAACCATGAGTCAAAAAATG-AAAACAATGG
* * * * * * * * ***
3312573 GGATTAAACCACAAGTTAAAAAGTGAAAATGACCAAGATTAAACCGCAAGTCAAAAAATGAAAAC
1 GGATTAAATCACAAGTCAAAAAATAAAAACGATCGAGATTAAATCATGAGTCAAAAAATGAAAA-
* ** ** **
3312638 A--ACT-GGAATTAAATGATGAGTCAAAAAATGAAAATGATCA
65 ATGA-TAGGGATTAAACCATGAGTCAAAAAATGAAAACAATGG
** * * *
3312678 ACATTAAATCACGAGTCAAAGAAATAAAAACGATCGAAATCAAATCATGAGTCAAAAAATG-AAA
1 GGATTAAATCACAAGTCAAA-AAATAAAAACGATCGAGATTAAATCATGAGTCAAAAAATGAAAA
* **
3312742 ATGATCGGGATTAAACCACT-AGTCAAAAAATGAAAATGAT-G
65 ATGATAGGGATTAAACCA-TGAGTCAAAAAATGAAAACAATGG
** * * * *
3312783 TAATTAAATCACAAG-CAAGAAAATAAAAATGATCGAAATTAAATCATGAGTCTAAAACTG-AAA
1 GGATTAAATCACAAGTCAA-AAAATAAAAACGATCGAGATTAAATCATGAGTCAAAAAATGAAAA
* *
3312846 ATGATCGGGATTAAACCATGAGTCAAAGAAATAAAAA
65 ATGATAGGGATTAAACCATGAGTCAAA-AAATGAAAA
3312883 TGAACAAAAT
Statistics
Matches: 332, Mismatches: 69, Indels: 31
0.77 0.16 0.07
Matches are distributed among these distances:
103 1 0.00
104 68 0.20
105 71 0.21
106 187 0.56
107 5 0.02
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (106 bp):
GGATTAAATCACAAGTCAAAAAATAAAAACGATCGAGATTAAATCATGAGTCAAAAAATGAAAAA
TGATAGGGATTAAACCATGAGTCAAAAAATGAAAACAATGG
Found at i:3312848 original size:104 final size:106
Alignment explanation
Indices: 3312621--3313700 Score: 362
Period size: 106 Copynumber: 10.2 Consensus size: 106
3312611 TTAAACCGCA
* * * **
3312621 AGTCAAAAAATGAAAA-CAACTGGAATTAAATGATGAGTCAAAAAATGAAAATGATCAACATTAA
1 AGTCAAAAAATGAAAATGATC-GGGATTAAACCATGAGTCAAAAAATGAAAATGATCAACATTAA
*
3312685 ATCACGAGTCAAAGAAATAAAAACGATCGAAATCAAATCATG
65 ATCACAAGTCAAAGAAATAAAAACGATCGAAATCAAATCATG
**
3312727 AGTCAAAAAATGAAAATGATCGGGATTAAACCACT-AGTCAAAAAATGAAAATGATGTA-ATTAA
1 AGTCAAAAAATGAAAATGATCGGGATTAAACCA-TGAGTCAAAAAATGAAAATGATCAACATTAA
* *
3312790 ATCACAAG-C-AAGAAAATAAAAATGATCGAAATTAAATCATG
65 ATCACAAGTCAAAG-AAATAAAAACGATCGAAATCAAATCATG
* * * * *
3312831 AGTCTAAAACTGAAAATGATCGGGATTAAACCATGAGTCAAAGAAATAAAAATGAACAAAATTAA
1 AGTCAAAAAATGAAAATGATCGGGATTAAACCATGAGTCAAA-AAATGAAAATGATCAACATTAA
** * * * * * * *
3312896 ATCATGAGTCAGA-AAATGAAAATGATAGGAATTAAACCAT-
65 ATCACAAGTCAAAGAAATAAAAACGATCGAAATCAAATCATG
* * ** * ** * * * **
3312936 AATCAAAAAATGAAAGTGA-CTAAGATTAAATCACAAGTAAAAAAATAAAAATGACCAGGATTAA
1 AGTCAAAAAATGAAAATGATC-GGGATTAAACCATGAGTCAAAAAATGAAAATGATCAACATTAA
** * * * * * * * *
3313000 GCCATC-TGTCAAA-ATATAAAAACAAACAAAATTAGATCACG
65 ATCA-CAAGTCAAAGAAATAAAAACGATCGAAATCAAATCATG
* * * * * * **
3313041 AGTCAAAAAATGAAAAGGACCAGGATTAAACCATGGGTC-AGAAATAAAAAT-A-CTAGGATTAA
1 AGTCAAAAAATGAAAATGATCGGGATTAAACCATGAGTCAAAAAATGAAAATGATC-AACATTAA
* *** * * * * *
3313103 ACCATGGGTTAGA-AAATGAAAACAATC-AAGATTAAATCATG
65 ATCACAAGTCAAAGAAATAAAAACGATCGAA-ATCAAATCATG
* * * * * * * *
3313144 AGTCAAAAAATGAAAATGATCAGTATTAAATCATAAGTTAGAGAAATAAAAATGATCAAAATTAA
1 AGTCAAAAAATGAAAATGATCGGGATTAAACCATGAGTCA-AAAAATGAAAATGATCAACATTAA
** ** * * * * *
3313209 ATCATGAGTCAAA-AAACGAAAACAATTGAGATTAAACCATG
65 ATCACAAGTCAAAGAAATAAAAACGATCGAAATCAAATCATG
* * * ** * *
3313250 AGTCAAGAAACAAAAATGATAATGAAAATTACTAGAATTAAATTATGAGTTAGAAAATGAAAATG
1 AGTC-----A-AAAAATGAAAATG---A-T-C-GGGATTAAACCATGAGTCAAAAAATGAAAATG
* * * * * * * * * *
3313315 AT-AAGGATTAAAGCATAAGTTAGA-AAATGAAAAC-A-CCAAATTAAAGCACG
54 ATCAA-CATTAAATCACAAGTCAAAGAAATAAAAACGATCGAAATCAAATCATG
* * * * * * * ** * **
3313365 AGTCATAAAATGAAAACGATTGGGACTAAACCTTGAGTGAGAAAATGAAAACCACCAGGATTAAA
1 AGTCAAAAAATGAAAATGATCGGGATTAAACCATGAGTCAAAAAATGAAAATGATCAACATTAAA
* * * * * ** *
3313430 CCACAAGTTAGA-AAATGAAAGCGAT-GGGATTAAA-CGATG
66 TCACAAGTCAAAGAAATAAAAACGATCGAAATCAAATC-ATG
* * * ** * *
3313469 AGTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAACAACCAAAATTAAA
1 AGTCAAAAAATGAAAATGATCGGGATTAAACCATGAGTCAAAAAATGAAAATGATCAACATTAAA
* ** * * * * * * * *
3313534 CCATGAGTCAAAAAAAGAAAGATGA-CTTAGATTAAATCA-C
66 TCACAAGTCAAAGAAATAAAAACGATC-GAAATCAAATCATG
* * * * ***
3313574 AGGTCAAAAAATGAAAACGATCGAGATTAAACCAT-AGGTTAGAAAATGAAAATGA-CTGGGATT
1 A-GTCAAAAAATGAAAATGATCGGGATTAAACCATGA-GTCAAAAAATGAAAATGATC-AACATT
* *** * * * * *
3313637 AAACCATGGGTTAGA-AAATGAAAACGATCGAGATTAAATCATG
63 AAATCACAAGTCAAAGAAATAAAAACGATCGAAATCAAATCATG
3313680 AGTCAAAAAATGAAAATGATC
1 AGTCAAAAAATGAAAATGATC
3313701 AGTATTAATT
Statistics
Matches: 752, Mismatches: 176, Indels: 93
0.74 0.17 0.09
Matches are distributed among these distances:
102 3 0.00
103 123 0.16
104 189 0.25
105 143 0.19
106 191 0.25
107 7 0.01
108 1 0.00
109 10 0.01
110 1 0.00
111 1 0.00
112 12 0.02
115 15 0.02
116 4 0.01
117 36 0.05
118 16 0.02
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.20
Consensus pattern (106 bp):
AGTCAAAAAATGAAAATGATCGGGATTAAACCATGAGTCAAAAAATGAAAATGATCAACATTAAA
TCACAAGTCAAAGAAATAAAAACGATCGAAATCAAATCATG
Found at i:3313378 original size:68 final size:70
Alignment explanation
Indices: 3313301--3313454 Score: 168
Period size: 68 Copynumber: 2.2 Consensus size: 70
3313291 ATTATGAGTT
* * * * *
3313301 AGAAAATGAAAATGATAAGGATTAAAGCATAAGTTAGAAAATGAAAA-CACCA-AATTAAAGCAC
1 AGAAAATGAAAACGATAAGGACTAAACCATAAGTGAGAAAATGAAAACCACCAGAATTAAACCAC
*
3313364 GAGTC
66 AAGTC
* ** * * *
3313369 ATAAAATGAAAACGATTGGGACTAAACCTTGAGTGAGAAAATGAAAACCACCAGGATTAAACCAC
1 AGAAAATGAAAACGATAAGGACTAAACCATAAGTGAGAAAATGAAAACCACCAGAATTAAACCAC
*
3313434 AAGTT
66 AAGTC
*
3313439 AGAAAATGAAAGCGAT
1 AGAAAATGAAAACGAT
3313455 GGGATTAAAC
Statistics
Matches: 69, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
68 38 0.55
69 5 0.07
70 26 0.38
ACGTcount: A:0.51, C:0.12, G:0.19, T:0.18
Consensus pattern (70 bp):
AGAAAATGAAAACGATAAGGACTAAACCATAAGTGAGAAAATGAAAACCACCAGAATTAAACCAC
AAGTC
Found at i:3313746 original size:176 final size:175
Alignment explanation
Indices: 3313406--3313784 Score: 392
Period size: 176 Copynumber: 2.2 Consensus size: 175
3313396 CTTGAGTGAG
* * * *
3313406 AAAATGAAAACCA-CCAGGATTAAACCACAAGTTAGAAAATGAAAGCGATGGGATTAAACGATGA
1 AAAATGAAAACGATCGA-GATTAAACCACAAGTTAGAAAATGAAAACGATGGGATTAAACCATGA
*
3313470 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAACAACCAAAATTAAAC
65 GTCAAAAAATGAAAACGATCAGGATTAAATCATGAGTCAAAAAATAAAAACAACCAAAATTAAAC
* * *
3313535 CATGAGTCAAAAAAAGAAAGATGACTTAGATTAAATCAC-AGGTCAA
130 CATGAGTCAAAAAAAGAAAAATGACTTAAATTAAATCACGA-CTCAA
* * * *
3313581 AAAATGAAAACGATCGAGATTAAACCATAGGTTAGAAAATGAAAATGACTGGGATTAAACCATGG
1 AAAATGAAAACGATCGAGATTAAACCACAAGTTAGAAAATGAAAACGA-TGGGATTAAACCATGA
* * * ** * **
3313646 GTTAGAAAATGAAAACGATC-GAGATTAAATCATGAGTCAAAAAATGAAAATGATCAGTATTAAT
65 GTCAAAAAATGAAAACGATCAG-GATTAAATCATGAGTCAAAAAATAAAAACAACCAAAATTAA-
* * * * * * *
3313710 TCACA-G-GTTAGAGAAATAAAAATGA-TTGAAATTAAATCACGACTTAG
128 AC-CATGAGTCAAAAAAAGAAAAATGACTT-AAATTAAATCACGACTCAA
* *
3313757 AAAATGAAAATGATTGAGATTAAACCAC
1 AAAATGAAAACGATCGAGATTAAACCAC
3313785 GAGTCAAGAA
Statistics
Matches: 167, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
175 42 0.25
176 120 0.72
177 3 0.02
178 2 0.01
ACGTcount: A:0.51, C:0.11, G:0.17, T:0.21
Consensus pattern (175 bp):
AAAATGAAAACGATCGAGATTAAACCACAAGTTAGAAAATGAAAACGATGGGATTAAACCATGAG
TCAAAAAATGAAAACGATCAGGATTAAATCATGAGTCAAAAAATAAAAACAACCAAAATTAAACC
ATGAGTCAAAAAAAGAAAAATGACTTAAATTAAATCACGACTCAA
Found at i:3313842 original size:53 final size:54
Alignment explanation
Indices: 3313756--3313859 Score: 129
Period size: 53 Copynumber: 1.9 Consensus size: 54
3313746 TCACGACTTA
** * *
3313756 GAAAATGAAAATGATTGAGATTAAACCACGAGTCAAGAAATG-AGAACAATAGT
1 GAAAATGAAAATGACAGAGATTAAACCACGAGTCAAAAAATGTAAAACAATAGT
* * **
3313809 GAAAATGAAAATGACAGGGATTAAAGCGTGAGTCAAAAAATGTAAAACAAT
1 GAAAATGAAAATGACAGAGATTAAACCACGAGTCAAAAAATGTAAAACAAT
3313860 GGGGATTAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 35 0.83
54 7 0.17
ACGTcount: A:0.52, C:0.09, G:0.21, T:0.18
Consensus pattern (54 bp):
GAAAATGAAAATGACAGAGATTAAACCACGAGTCAAAAAATGTAAAACAATAGT
Found at i:3314256 original size:176 final size:176
Alignment explanation
Indices: 3314074--3314401 Score: 385
Period size: 176 Copynumber: 1.9 Consensus size: 176
3314064 AAACAATTGA
** * ** * *
3314074 AATTAAATCATGAGTCAAAAAATAAAAATTAC-AGAAATGAAATCATGAGTCTA-AAACTGAAAA
1 AATTAAATCACAAGTCAAAAAATAAAAATGACTAG-AATGAAATCACAAGTC-AGAAAATAAAAA
* * * * *
3314137 CAA-CAGGGATTAAACCATGAGTTAGAAAATTA-AAACAACAGGGATTAAACCATGTGTTAGAAA
64 CAACCA-GGATTAAACCACGAGTCAGAAAA-TACAAACAACAGGGATTAAACCATGAGTCAAAAA
* *
3314200 ATGAAGACAACGGGGATTAAACCATGAGTCAAAGAAATAAAAATGACCAG
127 ATAAAAACAACGGGGATTAAACCATGAGTCAAAGAAATAAAAATGACCAG
* * * *
3314250 AATTAAATCACAAGTCAGAAAATGAAAATGACTAGGATTAAATCACAAGTCAGAAAATAAAAACA
1 AATTAAATCACAAGTCAAAAAATAAAAATGACTAGAATGAAATCACAAGTCAGAAAATAAAAACA
* ** *
3314315 ACCAGGATTAAACCACGAGTCAGAAAATACAAACGACCTGGATTAAATCATGAGTCAAAAAATAA
66 ACCAGGATTAAACCACGAGTCAGAAAATACAAACAACAGGGATTAAACCATGAGTCAAAAAATAA
*
3314380 AAACAACTGGGATTAAACCATG
131 AAACAACGGGGATTAAACCATG
3314402 GGTTAGAAAA
Statistics
Matches: 125, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
175 3 0.02
176 118 0.94
177 4 0.03
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.19
Consensus pattern (176 bp):
AATTAAATCACAAGTCAAAAAATAAAAATGACTAGAATGAAATCACAAGTCAGAAAATAAAAACA
ACCAGGATTAAACCACGAGTCAGAAAATACAAACAACAGGGATTAAACCATGAGTCAAAAAATAA
AAACAACGGGGATTAAACCATGAGTCAAAGAAATAAAAATGACCAG
Found at i:3315809 original size:139 final size:140
Alignment explanation
Indices: 3315660--3315931 Score: 305
Period size: 139 Copynumber: 1.9 Consensus size: 140
3315650 ATGAGTCAGA
* ** * * * * *
3315660 AAATGAAAAATGATTGGGATTATACTACGAGTCAAAAAATGAAAACAATCGAGATTAAATCACAA
1 AAATGAAAAATAATAAGGATTAAACCACAAGTCAAAAAATGAAAACAATCAAGATTAAACCACAA
* ** * *
3315725 GTTAAAAAATAAAAATGA-CAGGATAAAACAGTGCA-TCTAAAAATGAAAAAGACAGGGATTAAA
66 GTTAAAAAATAAAAATGACCAGAATAAAACAACG-AGTCAAAAAATGAAAAAGACAGGCATTAAA
3315788 TCACGAACCAG
130 TCACGAACCAG
* * * * **
3315799 AAATGTAAAATAATAATGATTAAACCACAAGTCAACAAGTGAAAATGATCAAGATTAAACCACAA
1 AAATGAAAAATAATAAGGATTAAACCACAAGTCAAAAAATGAAAACAATCAAGATTAAACCACAA
* * * * *
3315864 GTTAGAAAATGAAAATGACCAGAATTAAACAACGAGTCAAAAAATGAAAATGACCGGCATTAAAT
66 GTTAAAAAATAAAAATGACCAGAATAAAACAACGAGTCAAAAAATGAAAAAGACAGGCATTAAAT
3315929 CAC
131 CAC
3315932 AAGTCAAAGA
Statistics
Matches: 107, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
139 68 0.64
140 39 0.36
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (140 bp):
AAATGAAAAATAATAAGGATTAAACCACAAGTCAAAAAATGAAAACAATCAAGATTAAACCACAA
GTTAAAAAATAAAAATGACCAGAATAAAACAACGAGTCAAAAAATGAAAAAGACAGGCATTAAAT
CACGAACCAG
Found at i:3315989 original size:106 final size:105
Alignment explanation
Indices: 3315817--3316478 Score: 363
Period size: 106 Copynumber: 6.3 Consensus size: 105
3315807 AATAATAATG
* * * * * * * * * *
3315817 ATTAAACCACAAGTCAACAAGTGAAAATGATCAAGATTAAACCACAAGTTAGAAAATGAAAATGA
1 ATTAAATCACAAGTCAAAAAATAAAAATGACCAAAATCAAATCACAAGTCATAAAATGAAAATGA
* * **
3315882 CCAGAATTAAACAACGAGTCAAAAAATGAAAATGACCGGC
66 CCAGAATTAAACCACGAGTCAAAAAATGAAAACGACCGAA
* ***
3315922 ATTAAATCACAAGTCAAAGAAATAAACATGACTGGAATCAAATCACAAGTCATAAAATGAAAATG
1 ATTAAATCACAAGTCAAA-AAATAAAAATGACCAAAATCAAATCACAAGTCATAAAATGAAAATG
* * *
3315987 ACCAGGATTAAACCACTAGTCAAAAAATGAAAACGATCGAA
65 ACCAGAATTAAACCACGAGTCAAAAAATGAAAACGACCGAA
** * * **
3316028 ATTAAATCATGAGTCAAAAAATAAAAATGACCAAAATTAAATCACGAGTC-TAAAACTGAAAACA
1 ATTAAATCACAAGTCAAAAAATAAAAATGACCAAAATCAAATCACAAGTCATAAAA-TGAAAATG
* *
3316092 ACCA-AGATTAAACCACGAGTCAAAAAATTAAAACTA-C-AA
65 ACCAGA-ATTAAACCACGAGTCAAAAAATGAAAACGACCGAA
* * * * * * * * * * * * *
3316131 GGACTAAACCTCGAGCCAGAAAATGAAAATGATCGAGATGAAACCATC-AGTCAAAAAATGAAAA
1 --ATTAAATCACAAGTCAAAAAATAAAAATGACCAAAATCAAATCA-CAAGTCATAAAATG-AAA
* * * * * * ** ** *
3316195 ACGATC-GATATTAAACCACAAGCCAGAAAATGAAGATAATGGAG
62 ATGACCAGA-ATTAAACCACGAGTCAAAAAATGAAAACGACCGAA
* ** * * * * * *
3316239 ATTAAACCATGAGTCAGAGAAGTAAAAATGAACCAAAATTAAATCACGAGTTAGAAAATGAAAAT
1 ATTAAATCACAAGTCA-AAAAATAAAAATG-ACCAAAATCAAATCACAAGTCATAAAATGAAAAT
** * *
3316304 GA-TGGAAATTAAACCATG-GTCAAAAAATGAAAACAACC-AA
64 GACCAG-AATTAAACCACGAGTCAAAAAATGAAAACGACCGAA
* * * ** * * * * *
3316344 GATTAAATCACAAGTCAAAAAATAAAAAAGGCTAGGATTAAACCATAAGTCAAAAAATGAAAAAG
1 -ATTAAATCACAAGTCAAAAAATAAAAATGACCAAAATCAAATCACAAGTCATAAAATGAAAATG
* * * * * * *
3316409 ATCA-AGATGAAACCACCAATCAAAAAATGAAAAATGATCGAG
65 ACCAGA-ATTAAACCACGAGTCAAAAAATG-AAAACGACCGAA
* *
3316451 ATTAAACCACAAGTCAAAAAATGAAAAT
1 ATTAAATCACAAGTCAAAAAATAAAAAT
3316479 AACAAGGATT
Statistics
Matches: 420, Mismatches: 115, Indels: 43
0.73 0.20 0.07
Matches are distributed among these distances:
103 3 0.01
104 40 0.10
105 138 0.33
106 190 0.45
107 27 0.06
108 22 0.05
ACGTcount: A:0.54, C:0.15, G:0.14, T:0.17
Consensus pattern (105 bp):
ATTAAATCACAAGTCAAAAAATAAAAATGACCAAAATCAAATCACAAGTCATAAAATGAAAATGA
CCAGAATTAAACCACGAGTCAAAAAATGAAAACGACCGAA
Found at i:3316115 original size:176 final size:175
Alignment explanation
Indices: 3315816--3316225 Score: 404
Period size: 176 Copynumber: 2.3 Consensus size: 175
3315806 AAATAATAAT
* * * * * * *
3315816 GATTAAACCACAAGTCAACAAGTGAAAATGATC-AAGATTAAACCACAAGTTAGAAAATGAAAAT
1 GATTAAACCACTAGTCAAAAAATGAAAACGATCGAA-ATTAAACCACAAGTCAAAAAATAAAAAT
* ** * *
3315880 GACCAGAATTAAACAACGAGTCAAAAAATGAAAATGACCGGCATTAAATCACAAGTCAAAGAAA-
65 GACCAAAATTAAACAACGAGTCAAAAAATGAAAACAACCAGCATTAAACCACAAGTCAAA-AAAT
* * * *
3315944 T-AAACATGAC-TGGAATCAAATCACAAGTCATAAAATGAAAATGACC-A
129 TAAAAC-T-ACAAGGAAT-AAACCACAAGCCAGAAAATGAAAATGACCGA
* **
3315991 GGATTAAACCACTAGTCAAAAAATGAAAACGATCGAAATTAAATCATGAGTCAAAAAATAAAAAT
1 -GATTAAACCACTAGTCAAAAAATGAAAACGATCGAAATTAAACCACAAGTCAAAAAATAAAAAT
* * *
3316056 GACCAAAATTAAATC-ACGAGTCTAAAACTGAAAACAACCAAG-ATTAAACCACGAGTCAAAAAA
65 GACCAAAATTAAA-CAACGAGTCAAAAAATGAAAACAACC-AGCATTAAACCACAAGTCAAAAAA
* * * *
3316119 TTAAAACTACAAGGACTAAACCTCGAGCCAGAAAATGAAAATGATCGA
128 TTAAAACTACAAGGAATAAACCACAAGCCAGAAAATGAAAATGACCGA
* * * *
3316167 GATGAAACCA-TCAGTCAAAAAATGAAAAACGATCGATATTAAACCACAAGCCAGAAAAT
1 GATTAAACCACT-AGTCAAAAAATG-AAAACGATCGAAATTAAACCACAAGTCAAAAAAT
3316226 GAAGATAATG
Statistics
Matches: 192, Mismatches: 33, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
174 1 0.01
175 49 0.26
176 134 0.70
177 8 0.04
ACGTcount: A:0.53, C:0.17, G:0.14, T:0.17
Consensus pattern (175 bp):
GATTAAACCACTAGTCAAAAAATGAAAACGATCGAAATTAAACCACAAGTCAAAAAATAAAAATG
ACCAAAATTAAACAACGAGTCAAAAAATGAAAACAACCAGCATTAAACCACAAGTCAAAAAATTA
AAACTACAAGGAATAAACCACAAGCCAGAAAATGAAAATGACCGA
Found at i:3316403 original size:247 final size:247
Alignment explanation
Indices: 3315965--3316516 Score: 630
Period size: 247 Copynumber: 2.2 Consensus size: 247
3315955 GGAATCAAAT
* * * * * * * *
3315965 CACAAGTCATAAAATGAAAATGACCAGGATTAAACCACT-AGTCA-AAAAATGAAAACG-ATCGA
1 CACAAGCCAAAAAATGAAAATAACAAGGATTAAACCA-TGAGTCAGAGAAAT-AAAATGAACCAA
* * * *
3316027 AATTAAATCATGAGTCAAAAAATAAAAATGACCAAAATTAAATCACGAGTCTAAAACTGAAAACA
64 AATTAAATCACGAGTCAAAAAATAAAAATGACCAAAATTAAACCACGAGTCAAAAAATGAAAACA
* * ** * *
3316092 ACCAAGATTAAACCACGAGTCAAAAAATTAAAACTACAAGGACTAAACCTCGAGCCAGAAAATGA
129 ACCAAGATTAAACCACAAGTCAAAAAATAAAAAAGACAAGGACTAAACCTCAAGCCAAAAAATGA
* * * * *
3316157 AAATGATCGAGATGAAACCATCAGTCAAAAAATGAAAAACGATCGATATTAAAC
194 AAAAGATCAAGATGAAACCACCAATCAAAAAATGAAAAACGATCGAGATTAAAC
* * ** *
3316211 CACAAGCCAGAAAATGAAGATAA-TGGAGATTAAACCATGAGTCAGAGAAGTAAAAATGAACCAA
1 CACAAGCCAAAAAATGAAAATAACAAG-GATTAAACCATGAGTCAGAGAAAT-AAAATGAACCAA
* * * *** *
3316275 AATTAAATCACGAGTTAGAAAATGAAAATGATGGAAATTAAACCATG-GTCAAAAAATGAAAACA
64 AATTAAATCACGAGTCAAAAAATAAAAATGACCAAAATTAAACCACGAGTCAAAAAATGAAAACA
* * * * *
3316339 ACCAAGATTAAATCACAAGTCAAAAAATAAAAAAGGCTAGGATTAAACCAT-AAGTCAAAAAATG
129 ACCAAGATTAAACCACAAGTCAAAAAATAAAAAAGACAAGGACTAAACC-TCAAGCCAAAAAATG
*
3316403 AAAAAGATCAAGATGAAACCACCAATCAAAAAATGAAAAATGATCGAGATTAAAC
193 AAAAAGATCAAGATGAAACCACCAATCAAAAAATGAAAAACGATCGAGATTAAAC
* *
3316458 CACAAGTCAAAAAATGAAAATAACAAGGATTAAACCATGAGTTAGAGAAATAAAATGAA
1 CACAAGCCAAAAAATGAAAATAACAAGGATTAAACCATGAGTCAGAGAAATAAAATGAA
3316517 AATGGTCGGG
Statistics
Matches: 253, Mismatches: 47, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
245 2 0.01
246 42 0.17
247 166 0.66
248 43 0.17
ACGTcount: A:0.54, C:0.14, G:0.14, T:0.17
Consensus pattern (247 bp):
CACAAGCCAAAAAATGAAAATAACAAGGATTAAACCATGAGTCAGAGAAATAAAATGAACCAAAA
TTAAATCACGAGTCAAAAAATAAAAATGACCAAAATTAAACCACGAGTCAAAAAATGAAAACAAC
CAAGATTAAACCACAAGTCAAAAAATAAAAAAGACAAGGACTAAACCTCAAGCCAAAAAATGAAA
AAGATCAAGATGAAACCACCAATCAAAAAATGAAAAACGATCGAGATTAAAC
Found at i:3316646 original size:21 final size:22
Alignment explanation
Indices: 3316600--3316645 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
3316590 GTTTGGGATT
* *
3316600 AAATGACGAGTTAGAAAATGAA
1 AAATGACGAGTCAAAAAATGAA
*
3316622 AAATGATGAGTCAAAAAATGAA
1 AAATGACGAGTCAAAAAATGAA
3316644 AA
1 AA
3316646 TTATCGGCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.59, C:0.04, G:0.20, T:0.17
Consensus pattern (22 bp):
AAATGACGAGTCAAAAAATGAA
Found at i:3316762 original size:34 final size:32
Alignment explanation
Indices: 3316701--3316797 Score: 79
Period size: 34 Copynumber: 2.9 Consensus size: 32
3316691 TCAAATCACG
* *
3316701 AGTCAAAAAATTAAAATGA-CTGGATTAAACCAC
1 AGTC-AAAAATAAAAATGATC-GAATTAAACCAC
* * **
3316734 TAGTGAAAAATGAAAATGATCAGAATTAAATTAC
1 -AGTCAAAAATAAAAATGATC-GAATTAAACCAC
3316768 AGTCAGAAAATAAAAATGATCGAAATTAAA
1 AGTCA-AAAATAAAAATGATCG-AATTAAA
3316798 TCATGAGTCT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
33 18 0.35
34 34 0.65
ACGTcount: A:0.55, C:0.09, G:0.13, T:0.23
Consensus pattern (32 bp):
AGTCAAAAATAAAAATGATCGAATTAAACCAC
Found at i:3316831 original size:104 final size:104
Alignment explanation
Indices: 3316635--3316836 Score: 237
Period size: 104 Copynumber: 1.9 Consensus size: 104
3316625 TGATGAGTCA
* * * *
3316635 AAAAATGAAAATTATCGGCATTAAATCACGAGTCAAAGAAATTAAAATGACCAAAATCAAATCAC
1 AAAAATGAAAATGATCAGAATTAAATCACGAGTCAAAGAAATAAAAATGACCAAAATCAAATCAC
* *
3316700 GAGTCAAAAAATTAAAATGACTGGATTAAACCACTAGTG
66 GAGTCAAAAAACTAAAATGACTCGATTAAACCACTAGTG
* * * * * *
3316739 AAAAATGAAAATGATCAGAATTAAATTAC-AGTCAGA-AAATAAAAATGATCGAAATTAAATCAT
1 AAAAATGAAAATGATCAGAATTAAATCACGAGTCAAAGAAATAAAAATGACCAAAATCAAATCAC
** *
3316802 GAGTCTCTAAAACTGAAATGACTACGATTAAACCA
66 GAGTC-AAAAAACTAAAATGACT-CGATTAAACCA
3316837 TGAGTCAGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
102 27 0.33
103 19 0.23
104 35 0.43
ACGTcount: A:0.51, C:0.13, G:0.13, T:0.22
Consensus pattern (104 bp):
AAAAATGAAAATGATCAGAATTAAATCACGAGTCAAAGAAATAAAAATGACCAAAATCAAATCAC
GAGTCAAAAAACTAAAATGACTCGATTAAACCACTAGTG
Found at i:3319040 original size:643 final size:643
Alignment explanation
Indices: 3317906--3319840 Score: 3630
Period size: 643 Copynumber: 3.0 Consensus size: 643
3317896 ACTAAAAAAC
3317906 GATC-GGATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAA-CATGAGTTCAAAGAAA
1 GATCGGGATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAACCATGAG-TCAAAGAAA
3317969 TAAAAGATGACCAGAATGT-AATCATGAGTGAAAAAATG-AAACAATGGGAATTAAACTACGAGT
65 T-AAAGATGACCAGAAT-TAAATCATGAGTGAAAAAATGAAAACAATGGGAATTAAACTACGAGT
* * *
3318032 CAAAAAA-GAAAACAATCAGGCTTAAATCATGAGTCAGAAAATAGAAATGACTAGGGTTCAACCA
128 CAAAAAATGAAAACAATCAGGATTAAATCATGAGTCAGAAAATAGAAATGACTAGGATTAAACCA
3318096 TGAGTTAG-AAATAAAAAACAAAACTTGGATGGAATCCTAAGTCAGAAAAT-AAAA-GACCAGGA
193 TGAGTTAGAAAAT-AAAAAC--AACTTGGATGGAATCCTAAGTCAGAAAATAAAAACGACCAGGA
*
3318158 TTTAAA-CTTTAGTCAG-AAATGAAAATGATTGGGATTAAACAT-GGTTAGAAAATGAAAATAAC
255 -TTAAACCTTTAGTCAGAAAATGAAAATGATTGGGATTAAACATGGGTTAGAAAATGAAAACAAC
3318220 CAAGATTAAATCACGAGTCAT-AAATGAAAAACAATCGGTATT-AATCACAAGTCAAAG-AATAA
319 CAAGATTAAATCACGAGTCATAAAATG-AAAACAATCGGTATTAAATCACAAGTCAAAGAAATAA
3318282 AAATGATCAAAATTAAATCACGAGTCAAAATATGAAAACAATCGAGACTAAACCATGATTCAGGA
383 AAATGATCAAAATTAAATCACGAGTCAAAATATGAAAACAATCGAGACTAAACCATGATTCAGGA
3318347 AATGAAAATGATAATGAAAATTACAGGAATTAAATTACAAGTCAAAAAATAAAAATGATCGGGAT
448 AATGAAAATGATAATGAAAATTACAGGAATTAAATTACAAGTCAAAAAATAAAAATGATCGGGAT
3318412 TAAAATGTGAGTTAAAAATGAAAACTATTGAAATTTAAACACGAGTCAAAAAAATGAAAATGACC
513 TAAAATGTGAGTTAAAAATGAAAACTATTGAAATTTAAACACGAGTCAAAAAAATGAAAATGACC
3318477 AGGACTAAACCCTTAGTGAGAAAATGAAAACTACTAGTGTTAAAGCATAAGTCAGAAAATGAAAG
578 AGGACTAAACCCTTAGTGAGAAAATGAAAACTACTAGTGTTAAAGCATAAGTCAGAAAATGAAAG
3318542 T
643 T
3318543 GATCGGGATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAACCATGAGTCAAAGAAAT
1 GATCGGGATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAACCATGAGTCAAAGAAAT
3318608 AAAGATGACCAGAATTAAATCATGAGTGAAAAAATGAAAACAATGGGAATTAAACTACGAGTCAA
66 AAAGATGACCAGAATTAAATCATGAGTGAAAAAATGAAAACAATGGGAATTAAACTACGAGTCAA
3318673 AAAATGAAAACAATCAGGATTAAATCATGAGTCAGAAAATAGAAATGACTAGGATTAAACCATGA
131 AAAATGAAAACAATCAGGATTAAATCATGAGTCAGAAAATAGAAATGACTAGGATTAAACCATGA
3318738 GTTAGAAAATAAAAACAACTTGGATGGAATCCTAAGTCAGAAAATAAAAACGACCAGGATTAAAC
196 GTTAGAAAATAAAAACAACTTGGATGGAATCCTAAGTCAGAAAATAAAAACGACCAGGATTAAAC
3318803 CTTTAGTCAGAAAATGAAAATGATTGGGATTAAACATGGGTTAGAAAATGAAAACAACCAAGATT
261 CTTTAGTCAGAAAATGAAAATGATTGGGATTAAACATGGGTTAGAAAATGAAAACAACCAAGATT
3318868 AAATCACGAGTCATAAAATGAAAACAATCGGTATTAAATCACAAGTCAAAGAAATAAAAATGATC
326 AAATCACGAGTCATAAAATGAAAACAATCGGTATTAAATCACAAGTCAAAGAAATAAAAATGATC
3318933 AAAATTAAATCACGAGTCAAAATATGAAAACAATCGAGACTAAACCATGATTCAGGAAATGAAAA
391 AAAATTAAATCACGAGTCAAAATATGAAAACAATCGAGACTAAACCATGATTCAGGAAATGAAAA
*
3318998 TGATAATGAAAATTACAGGAATTAAATTACAAGTTAAAAAATAAAAATGATCGGGATTAAAATGT
456 TGATAATGAAAATTACAGGAATTAAATTACAAGTCAAAAAATAAAAATGATCGGGATTAAAATGT
3319063 GAGTTAAAAATGAAAACTATTGAAATTTAAACACGAGTCAAAAAAATGAAAATGACCAGGACTAA
521 GAGTTAAAAATGAAAACTATTGAAATTTAAACACGAGTCAAAAAAATGAAAATGACCAGGACTAA
3319128 ACCCTTAGTGAGAAAATGAAAACTACTAGTGTTAAAGCATAAGTCAGAAAATGAAAGT
586 ACCCTTAGTGAGAAAATGAAAACTACTAGTGTTAAAGCATAAGTCAGAAAATGAAAGT
3319186 GATCGGGATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAACCATGAGTCAAAGAAAT
1 GATCGGGATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAACCATGAGTCAAAGAAAT
3319251 AAAGATGACCAGAATTAAATCATGAGTGAAAAAATGAAAACAATGGGAATTAAACTACGAGTCAA
66 AAAGATGACCAGAATTAAATCATGAGTGAAAAAATGAAAACAATGGGAATTAAACTACGAGTCAA
3319316 AAAATGAAAACAATCAGGATTAAATCATGAGTCAGAAAATAGAAATGACTAGGATTAAACCATGA
131 AAAATGAAAACAATCAGGATTAAATCATGAGTCAGAAAATAGAAATGACTAGGATTAAACCATGA
3319381 GTTAGAAAAT-AAAACAACTTGGATGGAATCCTAAGTCAGAAAATAAAAACGACCAGGATTAAAC
196 GTTAGAAAATAAAAACAACTTGGATGGAATCCTAAGTCAGAAAATAAAAACGACCAGGATTAAAC
3319445 CTTTAGTCAGAAAATGAAAATGATTGGGATTAAACATGGGTTAGAAAATGAAAACAACCAAGATT
261 CTTTAGTCAGAAAATGAAAATGATTGGGATTAAACATGGGTTAGAAAATGAAAACAACCAAGATT
3319510 AAATCACGAGTCATAAAATGAAAACAATCGGTATTAAATCACAAGTCAAAGAAATAAAAATGATC
326 AAATCACGAGTCATAAAATGAAAACAATCGGTATTAAATCACAAGTCAAAGAAATAAAAATGATC
3319575 AAAATTAAATCACGAGTCAAAATATGAAAACAATCGAGACTAAACCATGATTCAGGAAATGAAAA
391 AAAATTAAATCACGAGTCAAAATATGAAAACAATCGAGACTAAACCATGATTCAGGAAATGAAAA
3319640 TGATAATGAAAATTACAGGAATTAAATTACAAGTCAAAAAATAAAAATGATCGGGATTAAAATGT
456 TGATAATGAAAATTACAGGAATTAAATTACAAGTCAAAAAATAAAAATGATCGGGATTAAAATGT
3319705 GAGTTAAAAATGAAAACTATTGAAATTTAAACACGAGTCAAAAAAATGAAAATGACCAGGACTAA
521 GAGTTAAAAATGAAAACTATTGAAATTTAAACACGAGTCAAAAAAATGAAAATGACCAGGACTAA
*
3319770 ACCCTTAGTGAGAAAATGAAAACTACTAGTGTTAAACCATAAGTCAGAAAATGAAAGT
586 ACCCTTAGTGAGAAAATGAAAACTACTAGTGTTAAAGCATAAGTCAGAAAATGAAAGT
*
3319828 GATTGGGATTAAA
1 GATCGGGATTAAA
3319841 AGATGAGTCA
Statistics
Matches: 1276, Mismatches: 8, Indels: 23
0.98 0.01 0.02
Matches are distributed among these distances:
636 1 0.00
637 67 0.05
638 94 0.07
639 92 0.07
640 30 0.02
641 55 0.04
642 467 0.37
643 470 0.37
ACGTcount: A:0.51, C:0.11, G:0.17, T:0.21
Consensus pattern (643 bp):
GATCGGGATTAAACCACGAGTTAAAAAATGAAGACAACGGGGATTAAACCATGAGTCAAAGAAAT
AAAGATGACCAGAATTAAATCATGAGTGAAAAAATGAAAACAATGGGAATTAAACTACGAGTCAA
AAAATGAAAACAATCAGGATTAAATCATGAGTCAGAAAATAGAAATGACTAGGATTAAACCATGA
GTTAGAAAATAAAAACAACTTGGATGGAATCCTAAGTCAGAAAATAAAAACGACCAGGATTAAAC
CTTTAGTCAGAAAATGAAAATGATTGGGATTAAACATGGGTTAGAAAATGAAAACAACCAAGATT
AAATCACGAGTCATAAAATGAAAACAATCGGTATTAAATCACAAGTCAAAGAAATAAAAATGATC
AAAATTAAATCACGAGTCAAAATATGAAAACAATCGAGACTAAACCATGATTCAGGAAATGAAAA
TGATAATGAAAATTACAGGAATTAAATTACAAGTCAAAAAATAAAAATGATCGGGATTAAAATGT
GAGTTAAAAATGAAAACTATTGAAATTTAAACACGAGTCAAAAAAATGAAAATGACCAGGACTAA
ACCCTTAGTGAGAAAATGAAAACTACTAGTGTTAAAGCATAAGTCAGAAAATGAAAGT
Found at i:3319557 original size:104 final size:103
Alignment explanation
Indices: 3319192--3319573 Score: 281
Period size: 104 Copynumber: 3.6 Consensus size: 103
3319182 AAGTGATCGG
* * * * * * *
3319192 GATTAAACCACGAGTTAAAAAATGAAGACAA-CGGGGATTAAACCATGAGTCAAAGAAATAAAGA
1 GATTAAATCACGAGTCAAAAAATGAAAACAATC-AGGATTAAATCATAAGTCAGA-AAATAAA-A
** * * * * ***
3319256 TGACCAGAATTAAATCATGAGTGAAAAAATGAAAACAA-TGG
63 TGATTAGGATTAAACCATGAGTTAGAAAAT-AAAACAACCAA
*
3319297 GAATTAAA-CTACGAGTCAAAAAATGAAAACAATCAGGATTAAATCATGAGTCAGAAAATAGAAA
1 G-ATTAAATC-ACGAGTCAAAAAATGAAAACAATCAGGATTAAATCATAAGTCAGAAAATA-AAA
* ***
3319361 TGACTAGGATTAAACCATGAGTTAGAAAATAAAACAACTTG
63 TGATTAGGATTAAACCATGAGTTAGAAAATAAAACAACCAA
** * * * * * * * *
3319402 GATGGAATC-CTAAGTCAGAAAATAAAAACGACCAGGATTAAACCTTTAGTCAGAAAATGAAAAT
1 GATTAAATCAC-GAGTCAAAAAATGAAAACAATCAGGATTAAATCATAAGTCAGAAAAT-AAAAT
* *
3319466 GATTGGGATTAAA-CATGGGTTAGAAAATGAAAACAACCAA
64 GATTAGGATTAAACCATGAGTTAGAAAAT-AAAACAACCAA
* * *
3319506 GATTAAATCACGAGTCATAAAATGAAAACAATC-GGTATTAAATCACAAGTCAAAGAAATAAAAA
1 GATTAAATCACGAGTCAAAAAATGAAAACAATCAGG-ATTAAATCATAAGTCAGA-AAAT-AAAA
3319570 TGAT
63 TGAT
3319574 CAAAATTAAA
Statistics
Matches: 225, Mismatches: 40, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
103 17 0.08
104 110 0.49
105 51 0.23
106 46 0.20
107 1 0.00
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.20
Consensus pattern (103 bp):
GATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAAATCATAAGTCAGAAAATAAAATGA
TTAGGATTAAACCATGAGTTAGAAAATAAAACAACCAA
Found at i:3319965 original size:141 final size:141
Alignment explanation
Indices: 3319832--3320357 Score: 315
Period size: 142 Copynumber: 3.7 Consensus size: 141
3319822 GAAAGTGATT
* ** * * *
3319832 GGGATTAAAAG-ATGAGTCAGAAAATGAAAAATGACCGAGATTATACCACGAGTCAAAAAATGAA
1 GGGATT-AAAGCATGAGTCAAAAAATGAAAAACAACAGAGATTAAACCACAAGTCAAAAAATGAA
* ** **
3319896 AATAATCGTGATTAAATTATGAGTCAAAAAATAAAAATGACAGGGATTAAACAATGCATCAAAAA
65 AATAACCAAGATTAAACCATGAGTCAAAAAATAAAAATGACAGGGATTAAACAATGCATCAAAAA
3319961 ATGAAAACGACA
130 ATGAAAACGACA
* * **
3319973 GGGATTAAAGCATGAGTCAAAAAATGTAAAACAACAGGGATTAAACCACAAGTCAAAATGTGAAA
1 GGGATTAAAGCATGAGTCAAAAAATGAAAAACAACAGAGATTAAACCACAAGTCAAAAAATGAAA
* * ** ** *
3320038 ATGACCAAGATTAAACCATGAGTCAAAAAATGAAAACAACCA-TAATTAAACAAT-AAGTCAAAA
66 ATAACCAAGATTAAACCATGAGTCAAAAAATAAAAATGA-CAGGGATTAAACAATGCA-TC-AAA
* *
3320101 AAATGAAAATGACT
128 AAATGAAAACGACA
* * * ** * * * * *
3320115 TGCATTAAATCACAAGTCAAAAAAAT-AAAAACGACCA-AAATCAAATCACGAGTCAAAAAATGA
1 GGGATTAAAGCATGAGTC-AAAAAATGAAAAAC-AACAGAGATTAAACCACAAGTCAAAAAATGA
* *** * **
3320178 AAATGA-TGGGAATTAAACCATGAGTCAAAAAATGAAAACAATC-GGGATTAAATC-ATG-AGTC
64 AAATAACCAAG-ATTAAACCATGAGTCAAAAAATAAAAATGA-CAGGGATTAAA-CAATGCA-TC
*
3320239 -AAAAATGAAAACAACTA
125 AAAAAATGAAAACGAC-A
* * ** * ** * * ** *
3320256 -AGATTAAACCACAAGTTAAAAAAT-AAAAATGACTCGA-ATTAAAGCATGAGTCAAAAAATGAC
1 GGGATTAAAGCATGAGTCAAAAAATGAAAAACAAC-AGAGATTAAACCACAAGTCAAAAAATGAA
** * * *
3320318 AACGACCAGGATTAAACCATGGGTC-AGAAATAAAAATGAC
65 AATAACCAAGATTAAACCATGAGTCAAAAAATAAAAATGAC
3320358 TAAGATTAAA
Statistics
Matches: 304, Mismatches: 67, Indels: 32
0.75 0.17 0.08
Matches are distributed among these distances:
137 1 0.00
138 11 0.04
139 51 0.17
140 34 0.11
141 93 0.31
142 103 0.34
143 11 0.04
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.18
Consensus pattern (141 bp):
GGGATTAAAGCATGAGTCAAAAAATGAAAAACAACAGAGATTAAACCACAAGTCAAAAAATGAAA
ATAACCAAGATTAAACCATGAGTCAAAAAATAAAAATGACAGGGATTAAACAATGCATCAAAAAA
TGAAAACGACA
Found at i:3320028 original size:106 final size:102
Alignment explanation
Indices: 3319834--3322446 Score: 477
Period size: 106 Copynumber: 24.6 Consensus size: 102
3319824 AAGTGATTGG
* * * * * * * *
3319834 GATTAAAAGATGAGTCAGAAAATGAAAAATGACCGAGATTATACCACGAGTCAAAAAATGAAAAT
1 GATT-AAACATGAGTCAAAAAATG-AAAACGACAGGGATTA-AACATGAGTCAAAAAATGAAAAC
* * ** *
3319899 AATCGTGATTAAATTATGAGTCAAAAAATAAAAATGA-CAGG
63 AA-CGGGATTAAATCACAAGTCAAAAAATAAAAATGACCA-A
3319940 GATTAAACAATGCA-TCAAAAAATGAAAACGACAGGGATTAAAGCATGAGTCAAAAAATGTAAAA
1 GATTAAAC-ATG-AGTCAAAAAATGAAAACGACAGGGATTAAA-CATGAGTCAAAAAATG-AAAA
* ** *
3320004 CAACAGGGATTAAACCACAAGTCAAAATGTGAAAATGACCAA
62 CAAC-GGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
* ** *
3320046 GATTAAACCATGAGTCAAAAAATGAAAACAACCA-TAATTAAACAATAAGTCAAAAAAATGAAAA
1 GATTAAA-CATGAGTCAAAAAATGAAAACGA-CAGGGATTAAAC-ATGAGTC-AAAAAATGAAAA
** * * *
3320110 TGACTTGCATTAAATCACAAGTCAAAAAAATAAAAACGACCAA
62 CAAC-GGGATTAAATCACAAGTC-AAAAAATAAAAATGACCAA
* * * * *
3320153 AATCAAATCACGAGTCAAAAAATGAAAATGA-TGGGAATTAAACCATGAGTCAAAAAATGAAAAC
1 GATTAAA-CATGAGTCAAAAAATGAAAACGACAGGG-ATTAAA-CATGAGTCAAAAAATGAAAAC
** * ** *
3320217 AATCGGGATTAAATCATGAGTC-AAAAATGAAAACAACTAA
63 AA-CGGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
** * * * ** * *
3320257 GATTAAACCACAAGTTAAAAAATAAAAATGACTCGAATTAAAGCATGAGTCAAAAAATGACAACG
1 GATTAAA-CATGAGTCAAAAAATGAAAACGACAGGGATTAAA-CATGAGTCAAAAAATGAAAAC-
* * * *** * *
3320322 ACCAGGATTAAACCATGGGTC-AGAAATAAAAATGACTAA
63 AACGGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
* * * * * *
3320361 GATTAAA-TTGGGGGTTAGAAAATGAAAACAATC-GAGATTAAATCATGAGTCAAAAAATGAAAA
1 GATTAAACAT--GAGTCAAAAAATGAAAACGA-CAGGGATTAAA-CATGAGTCAAAAAATGAAAA
* * * * * ***
3320424 TGATCAGTATTAAATCACAAGTCAGAGAAATAAAAATGATTGA
62 -CAACGGGATTAAATCACAAGTCA-AAAAATAAAAATGACCAA
* * * * ** * * *
3320467 CATTAAATCACGAGTCAGAAAACGAAAATAATCA-AGATTAAACCACAAGTCAAGAATTGAAAAC
1 GATTAAA-CATGAGTCAAAAAATGAAAACGA-CAGGGATT-AA--AC-A-T---G-AGT-CAAA-
** ** * ** * ***
3320531 TATAATGAAAATTACTGAAATTAAATTATGAGTCAAAAAATGAAAATGACTGG
53 -A-AATGAAAACAAC-GGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
* * ** ** **
3320584 GATTAAAACATGAGT-TAAAAATGAAAACGACCGAAATTAAAGCACAAGTCAAAAAATGATAATG
1 GATT-AAACATGAGTCAAAAAATGAAAACGACAGGGATTAAA-CATGAGTCAAAAAATGA-AAAC
*** * * * ** ****
3320648 TTTGGGATTCAACCACTAGTCAAAAAGCAAAAATG-GTTG
63 AACGGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
* * * ** * *
3320687 GAATTAAATCATGAGTCAGAAAATAAAAAATGATC-GAAATTAAATCATGAGTCTAAAATTGAAA
1 G-ATTAAA-CATGAGTCAAAAAAT-GAAAACGA-CAGGGATTAAA-CATGAGTCAAAAAATGAAA
* ** * * * * *
3320751 ACGATCTAGATTAAACCACGAGTC-AGAAATTAAAATGA-CAGG
61 AC-AACGGGATTAAATCACAAGTCAAAAAATAAAAATGACCA-A
* * * * ** * *
3320793 GATTAAACCACGAGTCAAAAATTG---ATGA-A--GATGAAACCACCAGTCAGAAAATGAAAAAA
1 GATTAAA-CATGAGTCAAAAAATGAAAACGACAGGGATTAAA-CATGAGTCAAAAAATGAAAACA
** * * * * * * * * * *
3320852 GATCAAGATTAAACCTCGAGTTAGAAAATGAAGA-CAACAGG
64 -A-CGGGATTAAATCACAAGTCAAAAAATAAAAATGACCA-A
* * * * * * *
3320893 GATTAAACCATGAGTCAGAGACATAAAAATGATCA-GAATTAAATCATGAGTTAGAAAATGAAAA
1 GATTAAA-CATGAGTCA-AAAAATGAAAACGA-CAGGGATTAAA-CATGAGTCAAAAAATGAAAA
** * * ** * * * * * *
3320957 TGATGGGAATTAAACCATGAGTTAGAAAATGAAACTGATCTA
62 CAACGGG-ATTAAATCACAAGTCAAAAAATAAAAATGACCAA
*
3320999 GATTAAATCATGAGT-AAGAAAATAAAAACGACTA-GGATTAAACCATGAGTCAGAAAAA--AAA
1 GATTAAA-CATGAGTCAA-AAAATGAAAACGAC-AGGGATTAAA-CATGAGTCA-AAAAATGAAA
** * *** * * ** **
3321060 TGACCCAAATTAAATCACGAGTCAAAAAATGAAAACAACCGG
61 ACAACGGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
* * * * * * * *
3321102 GATTAAACCATGGGCCAAAAAATAAAAACAACAGAGATTAAATCACGAGTCAGAAAATGAAGACG
1 GATTAAA-CATGAGTCAAAAAATGAAAACGACAGGGATTAAA-CATGAGTCAAAAAATGAAAAC-
** * * * *
3321167 ATTGGAATTAAA-CTATAAGTCAAAGAA-AAAAATGATCAA
63 AACGGGATTAAATC-ACAAGTCAAAAAATAAAAATGACCAA
* ** * * * *
3321206 AATTAAATCATGAGTCAAAAAACAAAAAAGTTC-GAGATTAAACCATGAGTTAGGAAATGATAAC
1 GATTAAA-CATGAGTCAAAAAATGAAAACG-ACAGGGATTAAA-CAT--G--A-G---TCA-AA-
* * * * * * * *
3321270 GATAATGAAAATTATCAGAATTAAATTATAAGTCAAAAAATGAAAATGACCGA
53 -A-AATGAAAA-CAACGGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
* * ** * * *
3321323 GATTAAA-ATACGAGTCAAAAAATGAAAATGACTGGGACCAAACCCTGAGTGAGAAAATGAAAAC
1 GATTAAACAT--GAGTCAAAAAATGAAAACGACAGGGATTAAA-CATGAGTCAAAAAATGAAAA-
* ** * * * * ** *
3321387 CACCAAGATTAAACCACGAGTCAGAAAATGAAAGCGATCAA
62 CAACGGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
* * ** * ** *
3321428 GATTAAACAACT-AGTCAAAAAATAAAAAAATGATC-GAAATTATACCACAAATCAAAAAATGAA
1 GATTAAAC-A-TGAGTCAAAAAAT--GAAAACGA-CAGGGATTA-AACATGAGTCAAAAAATGAA
* * * * ** *
3321491 AACGACTGAGATTAAATCACTAGTCAAAAAATAAAAGT-AATAGG
60 AACAAC-GGGATTAAATCACAAGTCAAAAAATAAAAATGACCA-A
** **
3321535 GATTAAACAATGCA-TCGAAAAAA-GAAAACGACAAAGATTAAAGCACAAGTCAAAAAATGTAAA
1 GATTAAAC-ATG-AGTC-AAAAAATGAAAACGACAGGGATTAAA-CATGAGTCAAAAAATG-AAA
* * * * * *
3321598 ACAACGGGGATTAAACCATAAGTCAAAAAGTGAAAATGATCGA
61 ACAAC-GGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
** * * * * *
3321641 GATTAAACCATGAGTCAAAAAATGAAAATAATTA-GAATTAAATGAGGAGTTAAAAAATGGAAAT
1 GATTAAA-CATGAGTCAAAAAATGAAAACGA-CAGGGATTAAA-CATGAGTCAAAAAAT-GAAA-
* **
3321705 GACAA--GCATTAAATCATGAGTCAAAAAAATAAAAATGACC-A
61 -ACAACGGGATTAAATCACAAGTC-AAAAAATAAAAATGACCAA
* * * * * **
3321746 GAATCAA-ATGACGAATTAGAAAATGAAAATGATTGGGATTAAACCACT-AGTCAAAAAATGAAA
1 GATTAAACATGA-G--TCAAAAAATGAAAACGACAGGGATTAAA-CA-TGAGTCAAAAAATGAAA
** * * * *
3321809 ACAATCGAAATTAAATCCCGAGTCAGAAAATAAGAATGACCAA
61 ACAA-CGGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
* ** ** * * * * *
3321852 AATTAAATCACAAGTCTCAAACTGAAAACGAGC-GAGATTAAAACATAAGTCAGAAAATTAAAAT
1 GATTAAA-CATGAGTCAAAAAATGAAAACGA-CAGGGATT-AAACATGAGTCAAAAAATGAAAA-
* * *** * * * *
3321916 GAAAGGGATTAAATCATGGGTTAGAAAATGAAAACGACCAA
62 CAACGGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
* * * * * * *
3321957 GATGAAACCTCTAGTCAGAAAATGAAAAACAATCA-GGATTAAACCAAGAGTCAGAAAATGAAAA
1 GATTAAACAT-GAGTCAAAAAATG-AAAACGA-CAGGGATTAAA-CATGAGTCAAAAAATGAAAA
* * * * *
3322021 CAACGGGGATTAAACCACGAGTCAAAGAAATGAAAATTA-CTA
62 CAAC-GGGATTAAATCACAAGTCAAA-AAATAAAAATGACCAA
* * * * *
3322063 GAATTAAATCACG-GTCAGAAAATGAAAATGA-TGGAAATTAAACCATGAGTCAAAAAATGAAAA
1 G-ATTAAA-CATGAGTCAAAAAATGAAAACGACAGG-GATTAAA-CATGAGTCAAAAAATG-AAA
* ** *
3322126 ACGATCATGATTAAATCATGAA-TCAAAAAATAAAAATGACCAA
61 AC-AACGGGATTAAATCA-CAAGTCAAAAAATAAAAATGACCAA
* * * * * *
3322169 GATTAAACCACGGGTCAAAAAGTAAAAACGATC--GAATTAAAGCATGAGTCAAAAAATGAAAAT
1 GATTAAA-CATGAGTCAAAAAATGAAAACGA-CAGGGATTAAA-CATGAGTCAAAAAATGAAAAC
* * * * *
3322232 AATCGGGATTAAATTAAATCGTGAGTCAAAAAATGAAAATGACTAG
63 AA-CGGGATTAAA-T-CA-C--AAGTCAAAAAATAAAAATGACCAA
* * *
3322278 GATTAAACCATGGGTCAAAAAATGAAAACGATCA-AGATTAAATCACGAGTCAAAAAATGAAAAC
1 GATTAAA-CATGAGTCAAAAAATGAAAACGA-CAGGGATTAAA-CATGAGTCAAAAAATGAAAAC
** * *
3322342 AATCGATATTAAGTCACAAGTCAAAGAAATAAAAATGATCAA
63 AA-CGGGATTAAATCACAAGTCAAA-AAATAAAAATGACCAA
* ** * * *
3322384 AATTAAATCACAAGTCAAAAAATGAAAATGATCA-TGATTAAACAATGAGTCAAGAAATGAAAA
1 GATTAAA-CATGAGTCAAAAAATGAAAACGA-CAGGGATTAAAC-ATGAGTCAAAAAATGAAAA
3322447 TGATAATGAA
Statistics
Matches: 1856, Mismatches: 491, Indels: 320
0.70 0.18 0.12
Matches are distributed among these distances:
97 1 0.00
98 20 0.01
99 17 0.01
100 27 0.01
101 7 0.00
102 5 0.00
103 79 0.04
104 267 0.14
105 408 0.22
106 572 0.31
107 183 0.10
108 25 0.01
109 55 0.03
110 36 0.02
112 3 0.00
113 5 0.00
114 3 0.00
115 10 0.01
116 44 0.02
117 65 0.04
118 24 0.01
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (102 bp):
GATTAAACATGAGTCAAAAAATGAAAACGACAGGGATTAAACATGAGTCAAAAAATGAAAACAAC
GGGATTAAATCACAAGTCAAAAAATAAAAATGACCAA
Found at i:3320278 original size:70 final size:70
Alignment explanation
Indices: 3320189--3320336 Score: 165
Period size: 69 Copynumber: 2.1 Consensus size: 70
3320179 AATGATGGGA
** * * * *
3320189 ATTAAACCATGAGTCAAAAAATGAAAA-CAATCGGGATTAAATCATGAGTC-AAAAATGAAAACA
1 ATTAAACCACAAGTTAAAAAATAAAAATCAATC-GAATTAAAGCATGAGTCAAAAAATGAAAACA
*
3320252 ACTAAG
65 ACCAAG
* * * *
3320258 ATTAAACCACAAGTTAAAAAATAAAAATGACTCGAATTAAAGCATGAGTCAAAAAATGACAACGA
1 ATTAAACCACAAGTTAAAAAATAAAAATCAATCGAATTAAAGCATGAGTCAAAAAATGAAAACAA
*
3320323 CCAGG
66 CCAAG
3320328 ATTAAACCA
1 ATTAAACCA
3320337 TGGGTCAGAA
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
69 38 0.58
70 27 0.42
ACGTcount: A:0.53, C:0.15, G:0.14, T:0.18
Consensus pattern (70 bp):
ATTAAACCACAAGTTAAAAAATAAAAATCAATCGAATTAAAGCATGAGTCAAAAAATGAAAACAA
CCAAG
Found at i:3320448 original size:104 final size:104
Alignment explanation
Indices: 3319976--3320462 Score: 302
Period size: 104 Copynumber: 4.6 Consensus size: 104
3319966 AACGACAGGG
* * * ** *
3319976 ATTAAAGCATGAGTCAAAAAATGTAAAAC-AACAGGGATTAAACCACAAGTCA-AAATGTGAAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAACGATCA-GGATTAAATCATGAGTCAGAAA--TAAAAA
* ** * * * *
3320039 TGACCAAGATTAAACCATGAGTCAAAAAATGAAAA-CAACCATA
62 TGACTAAGATTAAACCACAAGTTAAAAAATAAAAATCAATC-GA
* * * * * ** *
3320082 ATTAAACAATAAGTCAAAAAAATGAAAATGA-CTTGCATTAAATCACAAGTCAAAAAAATAAAAA
1 ATTAAACCATGAGTC-AAAAAATGAAAACGATC-AGGATTAAATCATGAGTC--AGAAATAAAAA
* * * * * * * * * *
3320146 CGACCAAAATCAAATCACGAGTCAAAAAATGAAAAT-GATGGGA
62 TGACTAAGATTAAACCACAAGTTAAAAAATAAAAATCAAT-CGA
* * * * **
3320189 ATTAAACCATGAGTCAAAAAATGAAAACAATCGGGATTAAATCATGAGTCAAAAATGAAAACAAC
1 ATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAATCATGAGTCAGAAATAAAAATGAC
* *
3320254 TAAGATTAAACCACAAGTTAAAAAATAAAAATGACTCGA
66 TAAGATTAAACCACAAGTTAAAAAATAAAAATCAATCGA
* * * * *
3320293 ATTAAAGCATGAGTCAAAAAATGACAACGACCAGGATTAAACCATGGGTCAGAAATAAAAATGAC
1 ATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAATCATGAGTCAGAAATAAAAATGAC
****** * *
3320358 TAAGATTAAATTGGGGGTTAGAAAATGAAAA-CAATCGA
66 TAAGATTAAACCACAAGTTAAAAAATAAAAATCAATCGA
* * * **
3320396 GATTAAATCATGAGTCAAAAAATGAAAATGATCAGTATTAAATCACAAGTCAGAGAAATAAAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAATCATGAGTC--AGAAATAAAAAT
3320461 GA
63 GA
3320463 TTGACATTAA
Statistics
Matches: 301, Mismatches: 67, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
103 5 0.02
104 158 0.52
105 1 0.00
106 73 0.24
107 60 0.20
108 1 0.00
109 3 0.01
ACGTcount: A:0.54, C:0.13, G:0.15, T:0.19
Consensus pattern (104 bp):
ATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAATCATGAGTCAGAAATAAAAATGAC
TAAGATTAAACCACAAGTTAAAAAATAAAAATCAATCGA
Found at i:3320736 original size:17 final size:19
Alignment explanation
Indices: 3320688--3320739 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 19
3320678 AAATGGTTGG
3320688 AATTAAATCATGAGTCAGA
1 AATTAAATCATGAGTCAGA
* **
3320707 AAATAAAAAATGA-TC-GA
1 AATTAAATCATGAGTCAGA
3320724 AATTAAATCATGAGTC
1 AATTAAATCATGAGTC
3320740 TAAAATTGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
17 12 0.46
18 4 0.15
19 10 0.38
ACGTcount: A:0.52, C:0.10, G:0.13, T:0.25
Consensus pattern (19 bp):
AATTAAATCATGAGTCAGA
Found at i:3321109 original size:138 final size:134
Alignment explanation
Indices: 3320892--3321265 Score: 349
Period size: 138 Copynumber: 2.7 Consensus size: 134
3320882 AAGACAACAG
* * *
3320892 GGATTAAACCATGAGTCAGAGACATAAAAATGATCAGAATTAAATCATGAGTTAGAAAATGAAAA
1 GGATTAAACCATGAGTCAGAGA-A-AAAAATGACCA-AATTAAATCATGAGTCAAAAAATGAAAA
* * * * *
3320957 TGATGGGAATTAAACCATGAGTTAGAAAATGAAACTGATC-TAGATTAAATCATGAGTAAGAAAA
63 -AACGGG-ATTAAACCATGAGTTAGAAAATGAAAC--AACAGAGATTAAATCACGAGTAAGAAAA
3321021 TAAAAACGACTA
124 TAAAAACGA-TA
*
3321033 GGATTAAACCATGAGTCAGA-AAAAAAATGACCCAAATTAAATCACGAGTCAAAAAATGAAAACA
1 GGATTAAACCATGAGTCAGAGAAAAAAATGA-CCAAATTAAATCATGAGTCAAAAAATGAAAA-A
* ** * * * *
3321097 ACCGGGATTAAACCATGGGCCAAAAAATAAAAACAACAGAGATTAAATCACGAGTCAGAAAATGA
64 A-CGGGATTAAACCATGAGTTAGAAAAT-GAAACAACAGAGATTAAATCACGAGTAAGAAAATAA
* *
3321162 AGACGATT
127 AAACGATA
* * * * *
3321170 GGAATTAAACTATAAGTCAAAGAAAAAAATGATCAAAATTAAATCATGAGTCAAAAAA-CAAAAA
1 GG-ATTAAACCATGAGTCAGAGAAAAAAATGA-CCAAATTAAATCATGAGTCAAAAAATGAAAAA
* *
3321234 AGTTCGAGATTAAACCATGAGTTAGGAAATGA
64 A---CGGGATTAAACCATGAGTTAGAAAATGA
3321266 TAACGATAAT
Statistics
Matches: 191, Mismatches: 34, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
137 7 0.04
138 100 0.52
139 63 0.33
140 1 0.01
141 20 0.10
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.20
Consensus pattern (134 bp):
GGATTAAACCATGAGTCAGAGAAAAAAATGACCAAATTAAATCATGAGTCAAAAAATGAAAAAAC
GGGATTAAACCATGAGTTAGAAAATGAAACAACAGAGATTAAATCACGAGTAAGAAAATAAAAAC
GATA
Found at i:3321626 original size:70 final size:70
Alignment explanation
Indices: 3321477--3321668 Score: 167
Period size: 71 Copynumber: 2.7 Consensus size: 70
3321467 TTATACCACA
** * * * *
3321477 AATCAAAAAATGAAAACGACTGAGATTAAATCACTAGTCAAAAAATAAAAGTAATAGGGATTAAA
1 AATCAAAAAATGAAAACGACAAAGATTAAAGCACAAGTCAAAAAATAAAAGCAACAGGGATTAAA
3321542 CAATG
66 CAATG
* *
3321547 CATCGAAAAAA-GAAAACGACAAAGATTAAAGCACAAGTCAAAAAATGTAAAA-CAACGGGGATT
1 AATC-AAAAAATGAAAACGACAAAGATTAAAGCACAAGTCAAAAAA--TAAAAGCAACAGGGATT
*
3321610 AAACCAT-
63 AAACAATG
* * * * **
3321617 AAGTCAAAAAGTGAAAATGATC-GAGATTAAACCATGAGTCAAAAAATGAAAA
1 AA-TCAAAAAATGAAAACGA-CAAAGATTAAAGCACAAGTCAAAAAAT-AAAA
3321669 TAATTAGAAT
Statistics
Matches: 99, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
69 1 0.01
70 43 0.43
71 49 0.49
72 6 0.06
ACGTcount: A:0.56, C:0.12, G:0.16, T:0.17
Consensus pattern (70 bp):
AATCAAAAAATGAAAACGACAAAGATTAAAGCACAAGTCAAAAAATAAAAGCAACAGGGATTAAA
CAATG
Found at i:3321705 original size:70 final size:70
Alignment explanation
Indices: 3321622--3321809 Score: 209
Period size: 71 Copynumber: 2.7 Consensus size: 70
3321612 ACCATAAGTC
* ** * *
3321622 AAAAAGTGAAAATGATCGAGATTAAACCATGAGTCAAAAAATGAAAATAATTAGAATTAAATGAG
1 AAAAAATGAAAATGATCGAGATTAAACCATGAGTCAAAAAATGAAAATAACCAGAATCAAATGAC
*
3321687 GAGTT
66 GAATT
* * * * *
3321692 AAAAAATGGAAATGA-CAAGCATTAAATCATGAGTCAAAAAAATAAAAATGACCAGAATCAAATG
1 AAAAAATGAAAATGATCGAG-ATTAAACCATGAGTC-AAAAAATGAAAATAACCAGAATCAAATG
3321756 ACGAATT
64 ACGAATT
* * *
3321763 AGAAAATGAAAATGATTGGGATTAAACCACT-AGTCAAAAAATGAAAA
1 AAAAAATGAAAATGATCGAGATTAAACCA-TGAGTCAAAAAATGAAAA
3321810 CAATCGAAAT
Statistics
Matches: 96, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
69 3 0.03
70 38 0.40
71 53 0.55
72 2 0.02
ACGTcount: A:0.55, C:0.09, G:0.16, T:0.20
Consensus pattern (70 bp):
AAAAAATGAAAATGATCGAGATTAAACCATGAGTCAAAAAATGAAAATAACCAGAATCAAATGAC
GAATT
Found at i:3321891 original size:105 final size:105
Alignment explanation
Indices: 3321300--3332001 Score: 931
Period size: 106 Copynumber: 100.8 Consensus size: 105
3321290 TTAAATTATA
* * ** * * * **
3321300 AGTCAAAAAATGAAAATGACCGAGATTAAAATACGAGTCAAAAAATGAAAATGA-CTGGGACCAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATC-GAGATTAA
* * * * * * *
3321364 ACCCTGAGTGAGAAAATGAAAACCACCAAGATTAAACCACG
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* ** * * * * * * *
3321405 AGTCAGAAAATGAAAGCGATCAAGATTAAACAACTAGTCAAAAAATAAAAAAATGATCGAAATTA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAAT--GAAAACGATCGAGATTA
* ** * * *
3321470 TACCACAAATCAAAAAATGAAAACGA-CTGAGATTAAATCACT
64 AACCATGAGTCAAAAAATGAAAACAATC-GAGATTAAATCACG
** ** * *
3321512 AGTCAAAAAAT-AAAA-GTAATAGGGATTAAA-CA-ATGCATCGAAAAAA-GAAAACGA-CAAAG
1 AGTCAAAAAATGAAAATG-ACCA-AAATTAAACCACAAG--TC-AAAAAATGAAAACGATC-GAG
* ** * * **
3321571 ATTAAAGCACAAGTCAAAAAATGTAAAACAA-CGGGGATTAAACCATA
60 ATTAAACCATGAGTCAAAAAATG-AAAACAATC-GAGATTAAATCACG
* * * * ** ** *
3321618 AGTCAAAAAGTGAAAATGATCGAGATTAAACCATGAGTCAAAAAATGAAAATAAT-TAGAATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAG-ATTAA
** * * * ** * *
3321682 ATGAGGAGTTAAAAAATGGAAATGA-CAAGCATTAAATCATG
65 ACCATGAGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * * ** * * * * *
3321723 AGTCAAAAAAATAAAAATGACCAGAATCAAATGACGAA-TTAGAAAATGAAAATGATTGGGATTA
1 AGTC-AAAAAATGAAAATGACCAAAATTAAACCAC-AAGTCAAAAAATGAAAACGATCGAGATTA
* *
3321787 AACCACT-AGTCAAAAAATGAAAACAATCGAAATTAAATCCCG
64 AACCA-TGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * ** * *
3321829 AGTCAGAAAAT-AAGAATGACCAAAATTAAATCACAAGTCTCAAACTGAAAACGAGCGAGATTAA
1 AGTCAAAAAATGAA-AATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
* * * * * * * *
3321893 AACATAAGTCAGAAAATTAAAATGAA-AGGGATTAAATCATG
65 ACCATGAGTCAAAAAATGAAAA-CAATCGAGATTAAATCACG
* * * * * * * * * *
3321934 GGTTAGAAAATGAAAACGACCAAGATGAAACCTCTAGTCAGAAAATGAAAAACAATC-AGGATTA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATG-AAAACGATCGA-GATTA
* * * *
3321998 AACCAAGAGTCAGAAAATGAAAACAA-CGGGGATTAAACCACG
64 AACCATGAGTCAAAAAATGAAAACAATC-GAGATTAAATCACG
* * * * * * * * *
3322040 AGTCAAAGAAATGAAAATTACTAGAATTAAATCAC-GGTCAGAAAATGAAAATGATGGAAATTAA
1 AGTCAAA-AAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
* *
3322104 ACCATGAGTCAAAAAATGAAAAACGATC-ATGATTAAATCATG
65 ACCATGAGTCAAAAAATG-AAAACAATCGA-GATTAAATCACG
* * * ** * *
3322146 AATCAAAAAATAAAAATGACCAAGATTAAACCACGGGTCAAAAAGTAAAAACGATCGA-ATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * * *
3322210 GCATGAGTCAAAAAATGAAAATAATCGGGATTAAATTAAATCGTG
66 CCATGAGTCAAAAAATGAAAACAATCGAGATTAAA-T-CA-C--G
* ** *** *
3322255 AGTCAAAAAATGAAAATGACTAGGATTAAACCATGGGTCAAAAAATGAAAACGATCAAGATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * * * *
3322320 TCACGAGTCAAAAAATGAAAACAATCGATATTAAGTCACA
66 CCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * * *
3322360 AGTCAAAGAAATAAAAATGATCAAAATTAAATCACAAGTCAAAAAATGAAAATGATC-ATGATTA
1 AGTCAAA-AAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGA-GATTA
* * * * * **
3322424 AACAATGAGTCAAGAAATGAAAATGATAATGAAAATTATCAAAATTAAATTATA
64 AACCATGAGTC----AA--AAAATG--AA--AACA--ATCGAGATTAAATCACG
* *** *** * * *
3322478 AGTCAAAAAATAAAAATGACCGGGATTAAAATGCAAGTTAAAAAATGAAAATGATCGAAATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * * * * *
3322543 GCACGAGTCAAAAATTGAAAACAA-CTG-GTACTAAAAC-CTA
66 CCATGAGTCAAAAAATGAAAACAATC-GAG-ATTAAATCAC-G
* * ** * * * *
3322583 AGTGAGAAAATGAAAACCACCAAGATCAAACCACAAGTCAAAAAATGAAAGCGATCGGGATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * * * *
3322648 CGACTG-GTCAAAAAATGAAAAACAACCAAGATTAGACCACG
66 CCA-TGAGTCAAAAAATG-AAAACAATCGAGATTAAATCACG
* * *** * *** * * * * *
3322689 AGTCAAAAAATGAAAACGATCGGGATTAAATCATGGGTCAAAAACTAAAAATGATAGGGATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * * * ** * * * *
3322754 CAATGTGT-AGGAAAATGGAAATGATAGGGATTAAAGCATG
66 CCATGAGTCA-AAAAATGAAAACAATCGAGATTAAATCACG
* * * * * ** * *
3322794 AGTAAAAAAATGTAAA--ACAATAAGGATTAAAACACAAGTTAAAAGGTGAAAATGACCGAGATT
1 AGTCAAAAAATGAAAATGACCA-AA--ATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATT
** * ** * * * * *
3322857 AAACCACAAGTCAAAAAATAAAAATGACCAAAATTAAATGATG
63 AAACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* ** * ** * * * *
3322900 AG-CGAAAAAATGAAAATGACTAGCATTAAATCATGAGTCAAAGAAATAAAAATGATTG-GAATC
1 AGTC-AAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAA-AAATGAAAACGATCGAG-ATT
* ** * * * *
3322963 AAATCACAAGTCAAAAAATCAAATGACCA--G-GATTAAACCACT
63 AAACCATGAGTCAAAAAATGAAA--ACAATCGAGATTAAATCACG
** * * * * * * * * *
3323005 AG-CAAAAAATGAAAACAACTAGAATTAAATCACAAGTCAAAATATAAAAATGACCAAAATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * * * * ** * *
3323069 TCACGAGTCTAAAACTAAAAATGATC-AGGATTAAACCATG
66 CCATGAGTCAAAAAATGAAAACAATCGA-GATTAAATCACG
* * * ** * ** *
3323109 AGTCAAAAAATTAAAACGA-CAAGGATTAAACCATGAGTCAAAAAATGAAAACGACCTTGATGAA
1 AGTCAAAAAATGAAAATGACCAA-AATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
** * * * * *
3323173 ACCACCAGTCATAAAAT-AAAAAATGATTGGGATTAAACCACG
65 ACCATGAGTCAAAAAATGAAAACA--ATCGAGATTAAATCACG
* ** ***** * ** * * *
3323215 AGTCAAAAAATGAAGACAATGGGGATTAAACTATGAGTCAGAGAAATAAAAATGATC-AGAATTA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCA-AAAAATGAAAACGATCGAG-ATTA
* * ** * *
3323279 AATCACGAGTC-AAAAATGAAAATGAT-GGGAATTAAACCACG
64 AACCATGAGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
** * * * * * * * * *
3323320 AGTCAAAAAATGAAAACAATCGAGATTAAATCACGAGTCAAAAAATAAAAATGACCAAGAATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAG-ATTAA
* * * * ** * *
3323385 GCTACGAGTCAAAAAATAAAAATGACCTAGATTAAATCACG
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * ** * * * * * *
3323426 AGTTAGAAAATGAAAACAATCGAGATTAAATCACAAGTCAAAAAATGAAAATGA-CTGGGATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATC-GAGATTAA
* * ** * * * *
3323490 A--ATGCATGTTAAATAATGAAAATGACCGAAATTAAAGCACT
65 ACCATG-A-GTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * * ** * * * * * * *
3323531 AGTTAGAAAATGAAAATGACTAGGACTAAACC-CTGAGTGAGAAAATGAAAACCACCAAGATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCAC-AAGTCAAAAAATGAAAACGATCGAGATTAA
* * * * * ***
3323595 GCCACGAGTCAGAAAATGAAAGCAATCAAGATTAAATGGTG
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * **** * * * * * *
3323636 AGTTAAAAAATGAAAAACGACTGGGATTACACCACGAGTCAGAAAATCAAAATGATCAAGATTAA
1 AGTCAAAAAATG-AAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
* * * * * * **
3323701 ATCATGA-TCAAAAAATAAAAATGAA-AGGGATTAAA-AAAT
65 ACCATGAGTCAAAAAATGAAAA-CAATCGAGATTAAATCACG
* * * ** ** * * * *
3323740 ACGTCGAAATATGAAAA-CAATATGGATTAAAGCACGAGTCAAAAAATGTAAAAC-AACAAGGAT
1 A-GTCAAAAAATGAAAATGACCA-AAATTAAACCACAAGTCAAAAAATG-AAAACGATCGA-GAT
** * ** * *
3323803 TAAACCACAAGTCAAAAAGTGAAAATGA-CTGAGATTAAACCATG
62 TAAACCATGAGTCAAAAAATGAAAACAATC-GAGATTAAATCACG
* ** ** * *
3323847 AGTCAAAAAATGAAAATGATCAAAATTAAAAGATGAGTCAAAAAATGAAAACAAT-GGGAATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAG-ATTAA
* * * * *
3323911 ACCACGAGTCAGAAAATGAAAACAACCAAGATTAAATCATG
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * * * * * * * *
3323952 AGTCAAAAAATGAAAACGACCAAGATTAAGCCACAGGTTAGAAAATGAAAATGACCAAGATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * * *
3324017 TCAT-A-TCAGAAAAT--AAA-AATGCTAGGTATTAAATCACA
66 CCATGAGTCAAAAAATGAAAACAAT-CGA-G-ATTAAATCACG
* * * ** * *
3324055 AGTCAAAAAAATAAAAGATG-CGAAAATTAAATCATGAGTCAGAAAAAAATGAAAAAGGTC-ATG
1 AGTC-AAAAAATGAAA-ATGACCAAAATTAAACCACAAGTC---AAAAAATGAAAACGATCGA-G
* * *
3324118 ATTAAACCACGAGTCAAGAAATAAGAAACAATAATGAAAAC-ATCGAAATTAAATTAC-
60 ATTAAACCATGAGTC-----------AA-AA-AATGAAAACAATCGAGATTAAATCACG
* * * * ** *** * * * * *
3324175 AATAAAAAAATGAAAATAATC-GGATTAAAATGCAAGT-TAGAAATAAAAATGACCTG-GAATTA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATC-GAG-ATTA
* * * * * * *
3324237 AAGCTATGAGT-ACAAAAATGAAAATGACTGGGGACTAAA-C-CTT
64 AA-CCATGAGTCA-AAAAATGAAAA-CAATCGAGATTAAATCAC-G
* * ** *** * * *
3324280 AGTGAAAACATGAAAACCACCAGGGTTAAAACCCACGAGTCAAAAAATTGAAAGCAATC-AGGA-
1 AGTCAAAAAATGAAAATGACCAAAATT-AAA-CCACAAGTCAAAAAA-TGAAAACGATCGA-GAT
* * * * *
3324343 TAAACGATGAGTCAAAAAATGAAAAC-ATGACTAGGATTATACCATG
62 TAAACCATGAGTCAAAAAATGAAAACAAT--CGA-GATTAAATCACG
** * * * * * *
3324389 AGTCAAAAAATGAAAAT-A-CACAGGTTAAATCACGAGTCAAAAAATTAAAATGA-CAGGGAGTA
1 AGTCAAAAAATGAAAATGACCA-AAATTAAACCACAAGTCAAAAAATGAAAACGATC-GAGATTA
* * * * *
3324451 AACAACA-CA-TCAAAAAATGAAAACGA-CAAGAATTAAAGCATG
64 AAC--CATGAGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * ***** * * * *
3324493 AGTCGAAAAATGTAAAATAATGGGGATTAAACCATAAGTCAAAAGGA-GAAAATGACCGAGATTA
1 AGTCAAAAAATG-AAAATGACCAAAATTAAACCACAAGTCAAAA-AATGAAAACGATCGAGATTA
* * ** * * * * * *
3324557 AACCATAAGTTAGCAAATGAAAACTACCAAAATTAAATGACA
64 AACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* ** * ** * * * *
3324599 AGTTAAAAAATGAAAATGACCAGCATTAAATCATGAGTCAAAGAAATAAAAATGA-CTAGAATCA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAA-AAATGAAAACGATCGAG-ATTA
* * * * ** * * *
3324663 AATCACGAGTTAGAAAATGAAAATGATCGGGATTAAACCACT
64 AACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
** * * ** ** * * * *
3324705 AGTCAAAAAATGAAAACAACTAGAATTAAATTATGAGTCAAAAAATAAAAATGACCGAAATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
** ** * * * * * *
3324770 TTACAAGCCAAAAACTAAAAACAACCTAGATTAAA-CTATG
66 CCATGAGTCAAAAAATGAAAACAATCGAGATTAAATC-ACG
* * * * ** ** ** * * * * *
3324810 AGGCAACAAATTAAAA-CAATAGCGATTAAACCATGAGTCAGAAAATGAAAATG-TCCAACATGA
1 AGTCAAAAAATGAAAATGACCA-AAATTAAACCACAAGTCAAAAAATGAAAACGAT-CGAGATTA
* * * *
3324873 AACCACT-AGTTAGAAAATGAAAAACGATCGAGATTAAACCATAC-
64 AACCA-TGAGTCAAAAAATG-AAAACAATCGAGATTAAATC--ACG
* * ** ***** * * * * *
3324917 A-TCAGAAAATGAAGACAATGGGGATTAAACCACGAGTCAAAGAAAT-AAAAGTGACCAAAATTA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAA-AAATGAAAA-CGATCGAGATTA
* * * * * * *
3324980 AATCGTGAGTTAAAAAATTAAAAAAGAT-GGGAATTAAACCACG
64 AACCATGAGTCAAAAAATGAAAACA-ATCGAG-ATTAAATCACG
* ** * * * * * * *
3325023 AGTCAGAAAATGAAAAATGACTGAGATTAAATCACGAGTCAAAAAATAAAAAAGACCAAGATTAA
1 AGTCAAAAAATG-AAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
* * ** * * *
3325088 ACCATGAGTCAGAAAATAAAAATGACCCAGATTAAATCTCG
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* ** * * *** * * *
3325129 AGTCAAAAAATGAAAACGACCAGGATTTAACTATGGGTCAAAAAATAAAAAATGATCGGGATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAAT-GAAAACGATCGAGATTAA
* * * * * * **
3325194 ACCATGGGTTAGAAAATTAAAACGACCGAGATTAAATCATA
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * ** * * * * * *
3325235 AGTCAAAAAAGTGAAAACGATCAGTATTAAATCACAAGTTAGAGAAATAAAAATGATCGAAATTA
1 AGTCAAAAAA-TGAAAATGACCAAAATTAAACCACAAGTCA-AAAAATGAAAACGATCGAGATTA
* * * * * *
3325300 AATCATAAGTCAGAAAATGAAAACGATCGAGATTAAACCATG
64 AACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * * ** * *
3325342 AGTCAGGAAACGAAAACAATAATGAAATTACCGAAATTAAATTACGAGT-AAGAAAATGAAAATG
1 AGT-------C-AAAA-AATGA--AAATGACCAAAATTAAACCACAAGTCAA-AAAATGAAAACG
* * * * ** * * *
3325406 -GCCAGGATTAAA--ATGGAGTTAAAATATGAAAATGATCGAAATTAAAGCATG
54 ATCGA-GATTAAACCAT-GAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * * ** * * * * * * *
3325457 AGTTAGAAAATGAAAATGA-GAGGGACTAAACC-CTAATTGAGAAAAT-AAAACCACCAAGATTA
1 AGTCAAAAAATGAAAATGACCA-AAATTAAACCAC-AAGTCAAAAAATGAAAACGATCGAGATTA
* * * * * * * * *
3325519 AACGATGAGTTAGAAAAT-AAAAGCGATTGGGAATAAATGACA
64 AACCATGAGTCAAAAAATGAAAA-CAATCGAGATTAAATCACG
** **** * *
3325561 AGTCAAAAAATGAAAGACAACTGGGA-TAATACCACAAGTCAAAAAATAAAAATGATCGAGATTA
1 AGTCAAAAAATGAAA-ATGACCAAAATTAA-ACCACAAGTCAAAAAATGAAAACGATCGAGATTA
* * * ** * *
3325625 AATCATGAGTTAAAAAATAAAAATGATAGGGATTAAA-CAAC-
64 AACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATC-ACG
* * * * * *
3325666 ATGTCAAAAAATGAAATTGA-CAAGGATTAAAGCATAAGT-AAGAAAATGTAAAAC-AACAAGGA
1 A-GTCAAAAAATGAAAATGACCAA-AATTAAACCACAAGTCAA-AAAATG-AAAACGATCGA-GA
** ** ** * * *
3325728 TTAAACCACAAGTCAAAAAGGGAAAATGACCGAGATTAAACCACA
61 TTAAACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* ** * * ** * * * * * *
3325773 AGTCAGAAAACAAAAATGACCAGAATTAAACGATGAGCCAAAAAATGAATATGACCAACATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * ** * * * *
3325838 TCACGAGTCAAAGAAAT-AAAATGACCGAAATCAAATCACA
66 CCATGAGTCAAA-AAATGAAAACAATCGAGATTAAATCACG
** ** * * *
3325878 AGTC-AAAAATGAAAATGATTAGGATTAAACCACTAGTC-AAAAATGAAAATGAT-TAGAATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAG-ATTAA
* * * ** * *
3325940 ATCATGAGTCAGAAAATAAAAATGATCGAAATTAAATCATG
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
** * ***** * * *
3325981 AGTTTAAAATTGAAAATGATTGGGATTAAACCATAAGTCAAAAAATTAAAACGA-CAAGGATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGA-GATTAA
** * * ** * * * *
3326045 ACCACAAATCAAAGAATGAAAATGATCGAGGTGAAACCACC
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* *** * ** * *
3326086 AGTCAAAAAATGAAAATGGATCGGGATTAAACCACAAATCAAAAAATGAAAATAATGGGGATTAA
1 AGTCAAAAAATGAAAAT-GACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
* * * ** * * *
3326151 ACCATAAGTCAGAGAAATAAAAATGACCCA-ACTTAAATCATG
65 ACCATGAGTCA-AAAAATGAAAACAATCGAGA-TTAAATCACG
*** ** * * * *
3326193 AGTCAAAAAATGAAAATGATGGAAATTAAACCATGAGTTAGAAAATGAAAATGA-CTAGGATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGA-GATTAA
* * * * * * * *
3326257 ATCACGAG-CTAGAAAAT-AAAAAAGACCGAGATTATACCATG
65 ACCATGAGTC-AAAAAATGAAAACA-ATCGAGATTAAATCACG
* * * * * * * * * * *
3326298 AGTCAGAAAATAAAAATGACCCAGATTCAATCAGAATTCAGAAAATGAAAAC-AACTGGGATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATC-GAGATTAA
* * ** * * *
3326362 ACC-T-AGGTTAGAAAATGAAAATGA-CCAGGATTAAACCATG
65 ACCATGA-GTCAAAAAATGAAAACAATCGA-GATTAAATCACG
* * * * * * * ** * * ** *
3326402 GGTTAGAAAATAAAAAAGA-CAGAGATTAAATCATGAGTTAGAAAATGAAAAAAAAT-TAGGATT
1 AGTCAAAAAATGAAAATGACCA-AAATTAAACCACAAGTCAAAAAATG-AAAACGATCGA-GATT
* * ** * *
3326465 AAACCATGGGTCAGAAAATGAAAATGA-CTAGGATTAAA-CTATG
63 AAACCATGAGTCAAAAAATGAAAACAATCGA-GATTAAATC-ACG
* * * ** * * * * *
3326508 GGTTAAAAAATGAAAATGATCGCAATTAAATCACGAGTTAGAAAATGAAAATGATCG-GTATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAG-ATTAA
* ** ** ** * *
3326572 ATCACAAG-CTAGGGAAAT-AAAATGATCAAAATTAAATCACG
65 ACCATGAGTC-A-AAAAATGAAAACAATCGAGATTAAATCACG
* ** * * *
3326613 AGTTAAAAAATGAAAATGATTAAGATTAAACCACAAGTCAGAAAATGAAAACGAT--A-ATGAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * *
3326675 --ATTA-TCAGAATAAATTACGAGTTAGAA-AAT-GAAAATGACTGGGATTAA-AATGCG
66 CCATGAGTCA-AA-AAA-T--GA---A-AACAATCG---A-GA-T----TAAATCA--CG
** * * * * *
3326729 AGTTTAAAAATGAAAATGACCAAAATTAAAGCACGAGTCAGAAAATGAAAACGA-CTGGGACTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATC-GAGATTAA
* * * * * * * *
3326793 ACCCTGAATGAGAAAATGAAAACCA-CCAG-TATCAATCCATG
65 ACCATGAGTCAAAAAATGAAAACAATCGAGAT-TAAAT-CACG
* * * * * * ** * * * * * *
3326834 AGTCAAAAAATGAAAGTGATCGAGATTGAACAATGAGCCAGAAAATGAAAAATGATTGGGATTAT
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATG-AAAACGATCGAGATTAA
* * *
3326899 ACCATGAGTCAAAAAATGAAAACGATTGAGATTAAATCATG
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * * * * * *
3326940 AGTCAAAAAAT-ACAAATGA-TAAGGATTAAACAACATGTC-AGAAATGAAAATGA-CAAGGATT
1 AGTCAAAAAATGA-AAATGACCAA-AATTAAACCACAAGTCAAAAAATGAAAACGATCGA-GATT
** * ** *
3327001 AAAGTATGAGTCAAAAAATGTAAAACAAT-AAGGATTAAATTGCA
63 AAACCATGAGTCAAAAAATG-AAAACAATCGA-GATTAAATCACG
* * * * * * * * * * *
3327045 AGTCAAAAACTAAAAATGAACGAGATTAAACCACGAGTCAGAAAATGAAAACAACCAAAATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * ** * * *
3327110 CAACGAGTCAAAAAATGAAAATGACCG-GTGTTAAATCATG
66 CCATGAGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * ** * * * *
3327150 AGTCAAAGAAATAAAAATGACCAAAATCAAATTATAAGTCAGATAATGAAAATGATCGAGATTAA
1 AGTCAAA-AAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
* * ** ** * * *
3327215 ATCACT-ACTCAAAAAACAAAAATGA-CTAGAATTAAATTATG
65 ACCA-TGAGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * * ** ** * * * *
3327256 AGTTAGAAAAT-ATAAATGACCAAAATTAAATCATGAGTGTAAAACTAAAAATGATTGAGATTAA
1 AGTCAAAAAATGA-AAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
* * * * *
3327320 ACCACGAGTCAAAAAATTAAAACAA-CAGGGATTAAACCATG
65 ACCATGAGTCAAAAAATGAAAACAATC-GAGATTAAATCACG
* * * * * * * * * * *
3327361 AGTC-AAAAATGAAAACGGCCAAGATGAAACCGCTACTTAGAAAATGAAAAATGATC-AGGACTA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATG-AAAACGATCGA-GATTA
* * * * * **
3327424 AACCACGAGTCAAAAAATGAAGACCA-CAGGGATTAAACCATT
64 AACCATGAGTCAAAAAATGAAAACAATC-GAGATTAAATCACG
* * * * * ** * * * *
3327466 AGTCAGAGAAATAAAAATGACTAGAATTAAATCATGAGTCAGAAAATGAAAACAATGGAAATTAA
1 AGTCA-AAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
** * * *
3327531 ACCATGAGTCAAAAAATGAAAATGA-CCATGATTAAATCGCA
65 ACCATGAGTCAAAAAATGAAAACAATCGA-GATTAAATCACG
* * * ** * ** * *
3327572 AGTCAAAAAATAAAAAGGAACAGGATTAAACCACAAGTCAAAAAAT--AAATGGCCTAAATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * * * **
3327635 TCACGAGTCATAAAATGAAAACGA-CTGAGATT-AATCATA
66 CCATGAGTCAAAAAATGAAAACAATC-GAGATTAAATCACG
* * * * ** ** * *
3327674 AGTC-AAAAATAAAAATGA-TAAGGATTAAACAACGCGTC-AAAAATGGAAAATTATAGAAATTA
1 AGTCAAAAAATGAAAATGACCAA-AATTAAACCACAAGTCAAAAAAT-GAAAACGATCGAGATTA
* * * * * *
3327736 AAGCACGAGTCAAAAAATGTAAAATAAT-GGGGTTAAA-CACA
64 AACCATGAGTCAAAAAATG-AAAACAATCGAGATTAAATCACG
* * * ** * * * *
3327777 AGTCAAAAAGTGAAAATGACCGAGATTAAACCATGAGTCAAAAAATCAAAATGATCAAAATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* ** *
3327842 CAATGAGTCAAAAAATGAAAATGAT-TAGCATTAAATCACG
66 CCATGAGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * * * ** * *
3327882 AGTCAAAAAAATAAAAATGACCAGAATCAAATCATGAGTCGAAAAATGAAATA-GATCAAGATTA
1 AGTC-AAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAA-ACGATCGAGATTA
* ** * * * * *
3327946 AACAATCGAAACTAAATCACGAGTCAGAAAAAAAATGACCAAAATTAAATCATG
64 AACCAT-GAGTC-AAA--A--AAT--G-AAAACAAT---CGAGATTAAATCACG
* * * * * * * * * * * * * *
3328000 AATCTAAAACTGAAAATGATCGAGATTAAACCACGAGTTAGAGAATGAAAATGACCGTGATGAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
** * * *
3328065 CCACCAGTCAAAAAATGAAAA-ATGATTGGGATTAAACCACG
66 CCATGAGTCAAAAAATGAAAACA--ATCGAGATTAAATCACG
* ** ***** ** * * *
3328106 AGTCAAAAAATGAAGACAATGGGGATTAAACCATGAGTCAAAAAAAT-AAGAATGATTGAAATTA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTC-AAAAAATGAA-AACGATCGAGATTA
* * * * ** * * *
3328170 AATCACGAGTCAGAAAATAAAAATTAT-GGGAATTAAACCACA
64 AACCATGAGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * * * ** * * *
3328212 AGTCAAAAAATGAAAATGATCGAGATTAAATCATGAGTCAAAAAATGAAAA-TAACTGAAATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATC-GAGATTAA
* * ** * *
3328276 ACCACGAGTCAAAAAATAAAAATGA-CCAGGATTAAATCATG
65 ACCATGAGTCAAAAAATGAAAACAATCGA-GATTAAATCACG
* * * * *** * * * * *
3328317 AGTCATAAAATGAAAATGACCGAGATTAAACTATGGGTCAGAAAATAAAAATGATTGGGATT-AA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * * ** * *
3328381 CCATGGGTTAGAAAATGAAAATGATCGAGATTAAATAATG
66 CCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * *** * * ** * *
3328421 AGTCAGAAAATGAAAATGATCGGTATTAAATCACAAGCCAATAAAACAAAAATGATCGAAATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAA-AAAATGAAAACGATCGAGATTAA
* * * * *
3328486 ATCATGAGTCAGAAAATGAAAACGATTGAGATTAAA-CTATG
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATC-ACG
* * ** * * * *
3328527 AATCAGAAAATGATAATGATAATGAAAATTGCCAAAATTAAAATACGAGTTAGAAAATGAAAATG
1 AGTC---AAA--A-AATGAAAATG---A---CCAAAATTAAACCACAAGTCAAAAAATGAAAACG
* * ** * *
3328592 A-CCAGGATTAAAACACCT-A-TTGAAAAATGAAAACAA-CTAGAATTAAAGCACG
54 ATCGA-GATT-AAAC-CATGAGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * ** * * * * * *
3328644 AGTTAGAAAATGAAAATGACTGAGACTAAACC-CTGAGTGAGAAAATGAAAATC-A-CCAGAATT
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCAC-AAGTCAAAAAATGAAAA-CGATCGAG-ATT
* **
3328706 AAACCATGAGTCAAAAAATGAAAGCGGTCGAGATTAAA-CAACG
63 AAACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATC-ACG
* * * ** * ** * *
3328749 AGTCAGAAAATGAAAAATAATCAGGATTACACCATTAGTCAAAAAATGAAAATGA-CTAGGATTA
1 AGTCAAAAAATG-AAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGA-GATTA
* * * ** * *
3328813 ATCACA--AGT-TAAAAATAAAAATGATAGGGA-TAAATCAACG
64 AAC-CATGAGTCAAAAAATGAAAACAATCGAGATTAAATC-ACG
* *** ** * * * * ** * *
3328853 TGTTGGAAAATGAAAACT-A-CAGGGATTAAAGCATAAGTAAAAAAATTTAAAATAATGGGGATT
1 AGTCAAAAAATGAAAA-TGACCA-AAATTAAACCACAAGTCAAAAAA-TGAAAACGATCGAGATT
* ** ** * * *
3328916 GAACCACAAGTCAAAAAGA-GAAAATGATAGAGATTAAACCATG
63 AAACCATGAGTCAAAAA-ATGAAAACAATCGAGATTAAATCACG
** ** ** * *
3328959 AGTCAGCAAATGAAAATGACTGAAATTAAATGATAAGTCAAAAAATGAAAATGATC-AGCATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAG-ATTAA
* * * * * *
3329023 ATCACGAGTCAAAGGAA-GAAAAAAGAT-TAGAATTAAATCACA
65 ACCATGAGTCAAA-AAATGAAAACA-ATCGAG-ATTAAATCACG
* ** * * * * *
3329065 AGTC--AAAATGAAAAATGACTAGGATTGAACCACTAGTCAAAAAA--AAAATGATTGAAATTAA
1 AGTCAAAAAATG-AAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
* ** * * ** * * * *
3329126 ATCACAAGTCAGAAAATAAAAATGACCAAAATTAAATCATG
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * * * * * * * * *
3329167 AGTC-TAAAATAAAAATGATCAAAATTAAATCACGAGTCTAGAACTAAAAATGA-CTGAGATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATC-GAGATTAA
* * * * * * ** * *
3329230 TCTATGAGTTAGAAATTTAAAATGATAG-GAATTAAACCACG
65 ACCATGAGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * * * * * * * * * *
3329271 AGTCAGAGAAA-GAAAATGATCGAGATGAATCCACCAA-TTAGAAAATGAAAAATGATTGGGATT
1 AGTCA-AAAAATGAAAATGACCAAAATTAAACCA-CAAGTCAAAAAATG-AAAACGATCGAGATT
* * *
3329334 AAACCATGAGTCAGAAAATGAAGAA-AA-CGAGGATTAAACCACA
63 AAACCATGAGTCAAAAAATGAA-AACAATCGA-GATTAAATCACG
* * *
3329377 AGTCAAAGAAA-GAAAAATGACCAAAATT-AATCACGAGTCAAAAAATGAAAATGATC-AGTATT
1 AGTCAAA-AAATG-AAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAG-ATT
* ** * * * ** * *
3329439 AAATCACAAGTTAGAAAATAAAAATGA-CTGGGATTAAACCACG
63 AAACCATGAGTCAAAAAATGAAAACAATC-GAGATTAAATCACG
* ** * * * * * * *
3329482 AGTC-AAAAATAAAAACAACTC-AGATTAAATCACGAGTCAGAAAATGAAAACCATTGGGATTAA
1 AGTCAAAAAATGAAAATGAC-CAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
* * * * * * *
3329545 ACTACGGGTCAAAAAATGAAAACGA-CTAAGATTAAACCATG
65 ACCATGAGTCAAAAAATGAAAACAATC-GAGATTAAATCACG
* * * ** * ** * * *
3329586 GGTTAGAAAATGAAAACAACCAAGATTAAATTACGAGTCAGAAAATGAAAACGAT-TAGTATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAG-ATTAA
* ** * * ** * * * *
3329650 ATCACAAGCCAAAGAAATAAAAATGATCAAAATT-CATCCATG
65 ACCATGAGTCAAA-AAATGAAAACAATCGAGATTAAAT-CACG
* * * * * ** * * ** *
3329692 AGTTAGAAAATGAAAATGATCGAGATTAAACCATGAGTCAAAAAAAGAAAATGATAATAAAAATT
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACG---ATCGAGATT
** * * ** * * * **
3329757 ACTGGAATTTAATTAAGAGTCAGAAAAGGAAAATGATCGGGAGTAAAACGTG
63 A----AA--CCA-T--GAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* ** * * * * * * * * *
3329809 AGTTAAAAAATGAAAACAAGCTAAATTAAAGCACGAGTCAGAAAATGAAAACAATTGGGACTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * * * * *
3329874 CCCTTAGT-AAGAAAATGAAAACCA-CCAGTCATAAAATGAAAGCG
66 CCATGAGTCAA-AAAATGAAAACAATCGAG--ATTAAAT--CA-CG
* * * * * * * * * *
3329918 A-TC--GAGATTAAATATGAGTCAAAAAATGAAA--A-ATGATC--AAGAT-TATACCA-CGAG-
1 AGTCAAAAAATGAAA-ATGA--C-CAAAATTAAACCACAAG-TCAAAAAATGAAAACGATCGAGA
* * * * **
3329972 TCAAA-CA--A-T--GAAAATG---A-TA-GGA-ATTAAATCATA
61 TTAAACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* ** * * * * *
3330005 AGTCAAAAAAT-AGAAATGA-TAGGGATTAAACAACACGTCAAAAAATGAAAATGATAGGGATTA
1 AGTCAAAAAATGA-AAATGACCA-AAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTA
* * * * * * *
3330068 AAGCACGAGTTAGAAAATGTAAAACAA-CGGGGTTAAACTTTA--
64 AACCATGAGTCAAAAAATG-AAAACAATCGAGATTAAA--TCACG
* * * ** * ** * * * * *
3330110 ATTCGAAAAGTGAAAATGAAGAAGATTAAACCATGAGTTAGAAAATGCAAATGACTGGA-ATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGA-TCGAGATTAA
** ** * *
3330174 ATGATGAGTCAAAAAATGAAAATGA-CAAGCATTAAATCAAG
65 ACCATGAGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * * * * * * * *
3330215 AGTCAAAGAAATAAAAATGACCAGAATCAAATCACTAGTTAGAAAATGAAAATGA-CCAGGATTA
1 AGTCAAA-AAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGA-GATTA
* ** * *
3330279 AA-C-TGCTAGTCAAGAAACAAAAACGA-CTAGAATTAAATCACG
64 AACCATG--AGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * * * ** * * * ** *
3330321 AGTTAGAAAATAAAAATGACCAAAATTAAATCATGAGCCTAAAATTGAAAATAATCGGGATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * ** * *
3330386 CCATGTGTCAAAAAATTAAAATGA-CAAGGATTAAACCACG
66 CCATGAGTCAAAAAATGAAAACAATCGA-GATTAAATCACG
* * * * * * * * *
3330426 AGTCAGAGAATGAAAATGACCGAGATGAAACCACCAGTCAAAAAATAAAAAATGATCGATATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAAT-GAAAACGATCGAGATTAA
* * * *
3330491 ACCACGAGTCAGAAAAA-GAAGACAA-C-ATGGATTAAACCATG
65 ACCATGAGTCA-AAAAATGAAAACAATCGA--GATTAAATCACG
* * * * * ** ** * *
3330532 AGTCAGAGAAATTAAAATGACCAGAATCAAAACATGAGTCAGCAAATAAAAACGA-CCAGGATTA
1 AGTCA-AAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGA-GATTA
* ** *
3330596 AATCATGAGTCAAAAAACAAAAACAA-CTGGGATTAAA-CAACG
64 AACCATGAGTCAAAAAATGAAAACAATC-GAGATTAAATC-ACG
* * * ** * * * * * *
3330638 AGTTAGAAAATAAAAAATGACCAGGATTAAATCACGAGTCAGAAAATGAAAA-TAACTACGATTA
1 AGTCAAAAAAT-GAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGA-GATTA
* * * * *
3330702 AACAATGGGTCAAAAAATGAAAACAA-CTAGGATTAAACCATG
64 AACCATGAGTCAAAAAATGAAAACAATCGA-GATTAAATCACG
* * * ** * * * * ** * *
3330744 GGTTAGAAAATGAAAATGACTGAGATTAAATCACAAGTTAGAAAATGAAAACGGCCAACATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * ** * * *
3330809 TCCCA--AG-CTAGAGAAATAAAAATGATTGAAATTAAATCAAG
66 --CCATGAGTC-A-AAAAATGAAAACAATCGAGATTAAATCACG
* * * * * *
3330850 AGTCAAAAAATAAAAACGATCGAGATTAAACCACAAGTTC-AAAAACGAAAACAATAGTGAAAAT
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAG-TCAAAAAATGAAAAC------G---A-
* ** ** * * **
3330914 TACCGAAATTAAATTACT-AGTCAAAAAATGAAAATGA-CCAGGATCAAAAT-GTG
55 T--CGAGATTAAACCA-TGAGTCAAAAAATGAAAACAATCGA-GAT-TAAATCACG
* *** * * ** * * *
3330967 AGTTAAAAAATG-AAATGACCGGTATTGAAGCATGAGTCAAAAAATGAAAATGA-CTAGGACTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGA-GATTAA
* * * * * * *
3331030 ACCCTGAGTGAGAAAATGAAAACTA-CTAGGATTAAACCATG
65 ACCATGAGTCAAAAAATGAAAACAATCGA-GATTAAATCACG
* * * ** * *** * * * *
3331071 AGTCAAAAAATAAAAAAGA-TAGGGATTAAACAATGCGTTAGAAAATGAAAATGATAG-GAATTA
1 AGTCAAAAAATGAAAATGACCA-AAATTAAACCACAAGTCAAAAAATGAAAACGATCGAG-ATTA
* * * * * * *
3331134 AAGCACGAGT-AAGAAAATGTAAAAGAATGGGGATTAAACCACA
64 AACCATGAGTCAA-AAAATG-AAAACAATCGAGATTAAATCACG
* * * * * * * * * *
3331177 AGTCAAAAAGTGAAAATAACCAAGATTAAATCATGAA-TTAGAAAATGAAAATGATCAAAATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCA-CAAGTCAAAAAATGAAAACGATCGAGATTAA
* * * ** *
3331241 ACAACGAGTTC-AAATATGAAAATGATC-AGCACTAAATCACG
65 ACCATGAG-TCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * * * * * *
3331282 AGTCAAAGAAATAAAAATGA-TAGGAATCAAATCACGAGTCAAAAAATGAAAAAGATCGAGATTA
1 AGTCAAA-AAATGAAAATGACCA-AAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTA
* * *
3331346 AACCACT-AGTCAAAAAATGAAAACAATTGAAACTAAATCACG
64 AACCA-TGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * ** * * * *
3331388 AGTCAAAAAATAAAAATGACCAAAATTAAATCATGAGTCTAAAACTGAAAACAATCTAGATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * * * *
3331453 CCATGAGTCAAAAAATTACAACAA-CAAGGATTAAACCATG
66 CCATGAGTCAAAAAATGAAAACAATCGA-GATTAAATCACG
* * * * * * * * * *
3331493 AGTTAGAGAATGAAAATAACCGAGATGAAACCACCAGTCAAAAAATGAAAAACGATTGGGATTAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATG-AAAACGATCGAGATTAA
* ** * * * *
3331558 ACCACT-AGTCAGAAAACAAAAACAATGGGGATTAAACCATG
65 ACCA-TGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * * ** * * * * *
3331599 AGTAAGAAAAATAAAAATGACCAAAATTAAATCATGAGTTAGAAAATAAAAAAAGAT-GGGAATT
1 AGTCA-AAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAAT-GAAAACGATCGAG-ATT
** ** *
3331663 AAACCACAAGTCAAAAAATGAAAATGATCGAGATTAAATCACA
63 AAACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * * ** *
3331706 AGTCAAAAAAT-AGAAATGACCAAAATTAAACCACGAGTCAAAAAATAAAAATGGCCAAGATTAA
1 AGTCAAAAAATGA-AAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
* ** * ** * *
3331770 ATCACAAGTCATAAAATGAAAATGATCGAGATTAAACCATG
65 ACCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
* * * * * * ** *** * * * *
3331811 GGTTAGAAAATAAAAACGATCAGGATT-AACCATGGGTTAGAAAATGAAAATGACCGAGATTAAA
1 AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
* * ** *
3331875 TCATGAGCCAAAAAATGAAAATGATCG-GTATTAAATCACA
66 CCATGAGTCAAAAAATGAAAACAATCGAG-ATTAAATCACG
* * * *** * ** * * * *
3331915 AGCCAATGAAATAAAAATGATTGAAATTAAATCATTAGTGAGAAAATAAAAATGATCGAGATTAA
1 AGTCAA-AAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAA
** *
3331980 ACCACAAATCAAAAAATGAAAA
65 ACCATGAGTCAAAAAATGAAAA
3332002 TGATAATGAA
Statistics
Matches: 7751, Mismatches: 2233, Indels: 1225
0.69 0.20 0.11
Matches are distributed among these distances:
85 1 0.00
86 5 0.00
87 1 0.00
88 6 0.00
89 7 0.00
90 15 0.00
91 3 0.00
92 2 0.00
93 6 0.00
94 3 0.00
96 1 0.00
97 7 0.00
99 10 0.00
100 16 0.00
101 34 0.00
102 62 0.01
103 314 0.04
104 833 0.11
105 2413 0.31
106 2538 0.33
107 622 0.08
108 86 0.01
109 90 0.01
110 58 0.01
111 19 0.00
112 19 0.00
113 7 0.00
114 28 0.00
115 64 0.01
116 113 0.01
117 235 0.03
118 82 0.01
119 19 0.00
120 6 0.00
121 14 0.00
122 5 0.00
123 2 0.00
124 5 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.19
Consensus pattern (105 bp):
AGTCAAAAAATGAAAATGACCAAAATTAAACCACAAGTCAAAAAATGAAAACGATCGAGATTAAA
CCATGAGTCAAAAAATGAAAACAATCGAGATTAAATCACG
Found at i:3322281 original size:40 final size:40
Alignment explanation
Indices: 3322203--3322284 Score: 112
Period size: 40 Copynumber: 2.0 Consensus size: 40
3322193 AAAACGATCG
*
3322203 AATTAAAGCATGAGTCAAAAAATGAAAATAATCGGGATTA
1 AATTAAAGCATGAGTCAAAAAATGAAAATAATCAGGATTA
* * *
3322243 AATTAAATCGTGAGTCAAAAAATGAAAATGA-CTAGGATTA
1 AATTAAAGCATGAGTCAAAAAATGAAAATAATC-AGGATTA
3322283 AA
1 AA
3322285 CCATGGGTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.52, C:0.07, G:0.17, T:0.23
Consensus pattern (40 bp):
AATTAAAGCATGAGTCAAAAAATGAAAATAATCAGGATTA
Found at i:3322330 original size:215 final size:215
Alignment explanation
Indices: 3321941--3322447 Score: 511
Period size: 215 Copynumber: 2.4 Consensus size: 215
3321931 ATGGGTTAGA
* * * * * * * *
3321941 AAATGAAAACGACCAAGATGAAACCTCTAGTCAGAAAATGAAAAACAATCAGGATTAAACCAA-G
1 AAATAAAAATGACCAAAATTAAACCACAAGTCAAAAAAT-AAAAACGATCA-GATTAAA-CAATG
* * ** *
3322005 AGTCAGAAAATGAAAACAA-CGGGGATTAAA--CCA-C--GAGTCAAAGAAATGAAAATTACTAG
63 AGTCAAAAAATGAAAATAATC-GGGATTAAATTAAATCGTGAGTCAAAGAAATGAAAATGACTAG
* * * * * *
3322064 AATTAAATCACGGTCAGAAAATGAAAATGATGGAAATTAAACCATGAGTCAAAAAATGAAAAACG
127 AATTAAACCACGGTCAAAAAATGAAAACGATGCAAATTAAACCACGAGTCAAAAAATG-AAAACA
*
3322129 ATC-ATGATTAAATCATGAA-TCAAA-
191 ATCGAT-ATTAAATCA-CAAGTCAAAG
* ** *
3322153 AAATAAAAATGACCAAGATTAAACCACGGGTCAAAAAGTAAAAACGATC-GAATTAAAGC-ATGA
1 AAATAAAAATGACCAAAATTAAACCACAAGTCAAAAAATAAAAACGATCAG-ATTAAA-CAATGA
*
3322216 GTCAAAAAATGAAAATAATCGGGATTAAATTAAATCGTGAGTCAAA-AAATGAAAATGACTAGGA
64 GTCAAAAAATGAAAATAATCGGGATTAAATTAAATCGTGAGTCAAAGAAATGAAAATGACTAGAA
* *
3322280 TTAAACCATGGGTCAAAAAATGAAAACGAT-CAAGATTAAATCACGAGTCAAAAAATGAAAACAA
129 TTAAACCA-CGGTCAAAAAATGAAAACGATGCAA-ATTAAACCACGAGTCAAAAAATGAAAACAA
*
3322344 TCGATATTAAGTCACAAGTCAAAG
192 TCGATATTAAATCACAAGTCAAAG
* * * *
3322368 AAATAAAAATGATCAAAATTAAATCACAAGTCAAAAAATGAAAATGATCATGATTAAACAATGAG
1 AAATAAAAATGACCAAAATTAAACCACAAGTCAAAAAATAAAAACGATCA-GATTAAACAATGAG
*
3322433 TCAAGAAATGAAAAT
65 TCAAAAAATGAAAAT
3322448 GATAATGAAA
Statistics
Matches: 244, Mismatches: 35, Indels: 28
0.79 0.11 0.09
Matches are distributed among these distances:
209 2 0.01
210 34 0.14
211 10 0.04
212 32 0.13
213 3 0.01
214 46 0.19
215 91 0.37
216 25 0.10
217 1 0.00
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (215 bp):
AAATAAAAATGACCAAAATTAAACCACAAGTCAAAAAATAAAAACGATCAGATTAAACAATGAGT
CAAAAAATGAAAATAATCGGGATTAAATTAAATCGTGAGTCAAAGAAATGAAAATGACTAGAATT
AAACCACGGTCAAAAAATGAAAACGATGCAAATTAAACCACGAGTCAAAAAATGAAAACAATCGA
TATTAAATCACAAGTCAAAG
Found at i:3322482 original size:47 final size:47
Alignment explanation
Indices: 3322404--3322496 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 47
3322394 CAAGTCAAAA
** * * *
3322404 AATGAAAATGATCATGATTAAACAATGAGTCAAGAAATGAAAATGAT
1 AATGAAAATGATCAAAATTAAACAATAAGTCAAAAAATAAAAATGAT
* **
3322451 AATGAAAATTATCAAAATTAAATTATAAGTCAAAAAATAAAAATGA
1 AATGAAAATGATCAAAATTAAACAATAAGTCAAAAAATAAAAATGA
3322497 CCGGGATTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.58, C:0.05, G:0.12, T:0.25
Consensus pattern (47 bp):
AATGAAAATGATCAAAATTAAACAATAAGTCAAAAAATAAAAATGAT
Found at i:3322506 original size:82 final size:81
Alignment explanation
Indices: 3322373--3322532 Score: 205
Period size: 82 Copynumber: 2.0 Consensus size: 81
3322363 CAAAGAAATA
* * *
3322373 AAAATGATCAAAATTAAATCACAAGTCAAAAAATGAAAATGATCATGATTAAACAATG-AGTCAA
1 AAAATGATCAAAATTAAATCACAAGTCAAAAAATAAAAATGACCAGGATT-AA-AATGAAGTCAA
*
3322437 GAAATGAAAATGATAATG
64 AAAATGAAAATGATAATG
* * * * *
3322455 AAAATTATCAAAATTAAATTATAAGTCAAAAAATAAAAATGACCGGGATTAAAATGCAAGTTAAA
1 AAAATGATCAAAATTAAATCACAAGTCAAAAAATAAAAATGACCAGGATTAAAATG-AAGTCAAA
3322520 AAATGAAAATGAT
65 AAATGAAAATGAT
3322533 CGAAATTAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 4 0.06
81 2 0.03
82 61 0.91
ACGTcount: A:0.57, C:0.07, G:0.12, T:0.23
Consensus pattern (81 bp):
AAAATGATCAAAATTAAATCACAAGTCAAAAAATAAAAATGACCAGGATTAAAATGAAGTCAAAA
AATGAAAATGATAATG
Found at i:3322882 original size:106 final size:103
Alignment explanation
Indices: 3322677--3336188 Score: 1085
Period size: 106 Copynumber: 127.3 Consensus size: 103
3322667 AAACAACCAA
* * * * * * *
3322677 GATTAGACCACGAGTCAAAAAATGAAAACGATCGGGATTAAATCATGGGTCAAAAACTAAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAAT-AGGATTAAATCACGAGTCAAAAAATAAAAATG
** * * * * * **
3322742 ATAGGGATTAAACAATGTGT-AGGAAAATGGAAATGATAGG
65 ACCGAGATTAAACCACGAGTCA-AAAAATAAAAATGATA-G
* * * * * ** *
3322782 GATTAAAGCATGAGTAAAAAAATGTAAAACAATAAGGATTAAAACACAAGTTAAAAGGTGAAAAT
1 GATTAAACCATGAGTCAAAAAATG-AAAACAAT-AGGATTAAATCACGAGTCAAAAAATAAAAAT
* * *
3322847 GACCGAGATTAAACCACAAGTCAAAAAATAAAAATGACCAA
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* ** * * * *
3322888 AATTAAATGATGAG-CGAAAAAATGAAAATGACTAGCATTAAATCATGAGTCAAAGAAATAAAAA
1 GATTAAACCATGAGTC-AAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAA-AAATAAAAA
** * * * * *
3322952 TGATTG-GAATCAAATCACAAGTCAAAAAAT-CAAATGACCAG
63 TGACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * *
3322993 GATTAAACCACT-AG-CAAAAAATGAAAACAACTAGAATTAAATCACAAGTCAAAATATAAAAAT
1 GATTAAACCA-TGAGTCAAAAAATGAAAACAA-TAGGATTAAATCACGAGTCAAAAAATAAAAAT
* * * * *
3323056 GACCAAAATTAAATCACGAGTCTAAAACTAAAAATGATCAG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGAT-AG
* * * * *
3323097 GATTAAACCATGAGTCAAAAAATTAAAACGACA-AGGATTAAACCATGAGTCAAAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAAC-A-ATAGGATTAAATCACGAGTCAAAAAATAAAAAT
** * * * *
3323161 GACCTTGATGAAACCACCAGTCATAAAATAAAAAATGATTGG
64 GACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGA-TAG
* * * * *
3323203 GATTAAACCACGAGTCAAAAAATGAAGACAATGGGGATTAAA-CTATGAGTCAGAGAAATAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACAAT-AGGATTAAATC-ACGAGTCA-AAAAATAAAAA
* * * *
3323267 TGATC-AGAATTAAATCACGAGTC-AAAAATGAAAATGATGG
63 TGACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGATAG
* *
3323307 GAATTAAACCACGAGTCAAAAAATGAAAACAATCGAGATTAAATCACGAGTCAAAAAATAAAAAT
1 G-ATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAAT
* * *
3323372 GACCAAGAATTAAGCTACGAGTCAAAAAATAAAAATGACCTA-
64 GACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGA--TAG
* * * * * * *
3323414 GATTAAATCACGAGTTAGAAAATGAAAACAATCGAGATTAAATCACAAGTCAAAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * * **
3323479 ACTGGGATTAAA--ATGCATGTTAAATAATGAAAATGACCG
65 ACCGAGATTAAACCACG-A-GTCAAAAAATAAAAATGATAG
* * * * * * * * * * *
3323518 AAATTAAAGCACT-AGTTAGAAAATGAAAATGACTAGGACTAAA-CCCTGAGTGAGAAAATGAAA
1 -GATTAAACCA-TGAGTCAAAAAATGAAAA-CAATAGGATTAAATCAC-GAGTCAAAAAATAAAA
** * * * *
3323581 ACCACCAAGATTAAGCCACGAGTCAGAAAATGAAAGCAATCA-A-
62 ATGACCGAGATTAAACCACGAGTCAAAAAAT-AAA--AATGATAG
*** * * * * * * *
3323624 GATTAAATGGTGAGTTAAAAAATGAAAAACGACTGGGATTACACCACGAGTCAGAAAATCAAAAT
1 GATTAAACCATGAGTCAAAAAATG-AAAAC-AATAGGATTAAATCACGAGTCAAAAAATAAAAAT
* * * * *
3323689 GATCAAGATTAAATCATGA-TCAAAAAATAAAAATGAAAGG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATA-G
** * * * *
3323729 GATTAAAAAAT-ACGTCGAAATATGAAAACAATATGGATTAAAGCACGAGTCAAAAAATGTAAAA
1 GATTAAACCATGA-GTCAAAAAATGAAAACAATA-GGATTAAATCACGAGTCAAAAAAT-AAAAA
* * * * * *
3323793 -CAACAAGGATTAAACCACAAGTCAAAAAGTGAAAATGACT-G
63 TGACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
** ** ** *
3323834 AGATTAAACCATGAGTCAAAAAATGAAAATGATCAAAATTAAAAGATGAGTCAAAAAATGAAAAC
1 -GATTAAACCATGAGTCAAAAAATGAAAACAAT-AGGATTAAATCACGAGTCAAAAAAT--AAA-
* * * ** * *
3323899 AATG--GGA-ATTAAACCACGAGTCAGAAAATGAAAACAACCAA
61 AATGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* ** * ** * * *
3323940 GATTAAATCATGAGTCAAAAAATGAAAACGACCAAGATTAAGCCAC-AGGTTAGAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAAC-AATAGGATTAAATCACGA-GTCAAAAAATAAAAAT
* * * * *
3324004 GACCAAGATTAAATCA-TA-TCAGAAAATAAAAATGCTAG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* ** * *
3324042 GTATTAAATCACAAGTCAAAAAAAT-AAAA-GAT-GCGAAAATTAAATCATGAGTCAGAAAAAAA
1 G-ATTAAACCATGAGTC-AAAAAATGAAAACAATAG-G---ATTAAATCACGAGTC---AAAAAA
** * **
3324104 TGAAAAA-GGTC-ATGATTAAACCACGAGTCAAGAAATAAGAAACAATA-
57 T-AAAAATGACCGA-GATTAAACCACGAGTCAAAAAATAA-AAATGATAG
* * * * *
3324151 -ATGAAAACATCGAAATTAAATTACAATAAAAAAATGAAAATAATCGGATTAAAATGCA--AGT-
1 GAT-TAAAC--C---A-T-GAGT-C----AAAAAATGAAAACAATAGGATT-AAAT-CACGAGTC
* * * * * *
3324212 TAGAAATAAAAATGACCTG-GAATTAAAGCTATGAGT-ACAAAAATGAAAATGACTGGG
51 AAAAAATAAAAATGACC-GAG-ATTAAA-CCACGAGTCA-AAAAATAAAAATGA-T-AG
* * * * ** * *
3324269 GACTAAACC-TTAGTGAAAACATGAAAACCACCAGGGTTAAAACCCACGAGTCAAAAAATTGAAA
1 GATTAAACCATGAGTCAAAAAATGAAAA-CAATAGGATT-AAA-TCACGAGTCAAAAAA-T-AAA
* * *
3324333 GCAAT--CAG-GA-TAAACGATGAGTCAAAAAATGAAAACATGACTAG
61 --AATGACCGAGATTAAACCACGAGTCAAAAAAT-AAAA-ATGA-TAG
* * * *
3324377 GATTATACCATGAGTCAAAAAATGAAAATACACAGG-TTAAATCACGAGTCAAAAAATTAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACA-ATAGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * *
3324441 ACAGGGAGTAAACAACAC-A-TCAAAAAATGAAAACGACAAG
65 ACCGAGATTAAAC--CACGAGTCAAAAAATAAAAATGA-TAG
* * * * * * ** * *
3324481 AATTAAAGCATGAGTCGAAAAATGTAAAATAATGGGGATTAAACCATAAGTCAAAAGGA-GAAAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACAAT-AGGATTAAATCACGAGTCAAAA-AATAAAAA
** * ** * * *
3324545 TGACCGAGATTAAACCATAAGTTAGCAAATGAAAACT-ACCAA
63 TGACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGA-TAG
* ** ** * * ** * *
3324587 AATTAAATGACAAGTTAAAAAATGAAAATGACCAGCATTAAATCATGAGTCAAAGAAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAA-AAATAAAAAT
* * * * * * *
3324652 GA-CTAGAATCAAATCACGAGTTAGAAAATGAAAATGATCGG
64 GACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGAT-AG
* * *
3324693 GATTAAACCACT-AGTCAAAAAATGAAAACAACTAGAATTAAATTATGAGTCAAAAAATAAAAAT
1 GATTAAACCA-TGAGTCAAAAAATGAAAACAA-TAGGATTAAATCACGAGTCAAAAAATAAAAAT
* ** * * * **
3324757 GACCGAAATTAAATTACAAGCCAAAAACTAAAAACAACCTA-
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA--TAG
* * * * * * * *
3324798 GATTAAACTATGAGGCAACAAATTAAAACAATAGCGATTAAACCATGAGTCAGAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * * * * *
3324863 TCCAACATGAAACCACTAGTTAGAAAATGAAAAACGATCG
65 ACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGATAG
* * * * *
3324903 AGATTAAACCAT-ACATCAGAAAATGAAGACAATGGGGATTAAACCACGAGTCAAAGAAATAAAA
1 -GATTAAACCATGA-GTCAAAAAATGAAAACAAT-AGGATTAAATCACGAGTCAAA-AAATAAAA
* * * * ** * * *
3324967 GTGACCAAAATTAAATCGTGAGTTAAAAAATTAAAAAAGATGG
62 ATGACCGAGATTAAACCACGAGTCAAAAAA-TAAAAATGATAG
* *
3325010 GAATTAAACCACGAGTCAGAAAATG-AAA-AATGACTGAGATTAAATCACGAGTCAAAAAATAAA
1 G-ATTAAACCATGAGTCAAAAAATGAAAACAAT-A--G-GATTAAATCACGAGTCAAAAAATAAA
* * * * *
3325073 AAAGACCAAGATTAAACCATGAGTCAGAAAATAAAAATGACCCA-
61 AATGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA--TAG
* ** * * *
3325117 GATTAAATC-TCGAGTCAAAAAATGAAAACGACCAGGATTTAA-CTATGGGTCAAAAAATAAAAA
1 GATTAAACCAT-GAGTCAAAAAATGAAAAC-AATAGGATTAAATC-ACGAGTCAAAAAAT-AAAA
* * * * * * * * **
3325180 ATGATCGGGATTAAACCATGGGTTAGAAAATTAAAACGACCG
62 ATGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * * * * *
3325222 AGATTAAATCATAAGTCAAAAAAGTGAAAACGATCAGTATTAAATCACAAGTTAGAGAAATAAAA
1 -GATTAAACCATGAGTCAAAAAA-TGAAAACAAT-AGGATTAAATCACGAGTCA-AAAAATAAAA
* * * ** * * * *
3325287 ATGATCGAAATTAAATCATAAGTCAGAAAATGAAAACGATCG
62 ATGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
** * *
3325329 AGATTAAACCATGAGTCAGGAAACGAAAACAATAATGAAATTACCGAAATTAAATTACGAGT-AA
1 -GATTAAACCATGAGTCAAAAAATGAAAACAAT-A-G--------G--ATTAAATCACGAGTCAA
* * * * * * *
3325393 GAAAATGAAAATGGCC-AGGATTAAA--ATGGAGTTAAAATATGAAAATGATCG
53 -AAAATAAAAATGACCGA-GATTAAACCA-CGAGTCAAAAAATAAAAATGATAG
* * * * ** * * * * * * *
3325444 AAATTAAAGCATGAGTTAGAAAATGAAAATGAGAGGGACTAAA-CCCTAATTGAGAAAAT-AAAA
1 -GATTAAACCATGAGTCAAAAAATGAAAACAATA-GGATTAAATCAC-GAGTCAAAAAATAAAAA
** * * * * * ** *
3325507 CCACCAAGATTAAACGATGAGTTAGAAAATAAAAGCGATTGG
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* ** ** * * *
3325549 GAATAAATGACAAGTCAAAAAATGAAAGACAACTGGGA-TAATACCACAAGTCAAAAAATAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAA-ACAA-TAGGATTAA-ATCACGAGTCAAAAAATAAAAA
* * * *
3325613 TGATCGAGATTAAATCATGAGTTAAAAAATAAAAATGATAGG
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATA-G
* ** *
3325655 GATTAAACAACAT--GTCAAAAAATGAAATTGAC-A-AGGATTAAAGCATAAGT-AAGAAAATGT
1 GATTAAAC--CATGAGTCAAAAAATGAAA---ACAATAGGATTAAATCACGAGTCAA-AAAAT-A
* * * * *** **
3325715 AAAA-CAACAAGGATTAAACCACAAGTCAAAAAGGGAAAATGACCG
59 AAAATGACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGATAG
** * ** * ** * * * * *
3325760 AGATTAAACCACAAGTCAGAAAACAAAAATGACCAGAATTAAA-CGATGAGCCAAAAAATGAATA
1 -GATTAAACCATGAGTCAAAAAATGAAAA-CAATAGGATTAAATC-ACGAGTCAAAAAATAAAAA
* * * **
3325824 TGACCAACATTAAATCACGAGTCAAAGAAAT-AAAATGACCG
63 TGACCGAGATTAAACCACGAGTCAAA-AAATAAAAATGATAG
* * * ** * * * * *
3325865 AAATCAAATCACAAGTC-AAAAATGAAAATGATTAGGATTAAACCACTAGTC-AAAAATGAAAAT
1 -GATTAAACCATGAGTCAAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAAT
** * * * *
3325928 GA-TTAGAATTAAATCATGAGTCAGAAAATAAAAATGATCG
64 GACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * ** * * * * * ** * *
3325968 AAATTAAATCATGAGTTTAAAATTGAAAATGATTGGGATTAAACCATAAGTCAAAAAATTAAAAC
1 -GATTAAACCATGAGTCAAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAAT
* * * * *
3326033 GA-CAAGGATTAAACCACAAATCAAAGAATGAAAATGATCGAG
64 GACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGAT--AG
* ** ** * * * * *
3326075 G-TGAAACCACCAGTCAAAAAATGAAAATGGATCGGGATTAAACCACAAATCAAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAA-CAAT-AGGATTAAATCACGAGTCAAAAAATAAAAAT
* ** * ** * ***
3326139 AATGGGGATTAAACCATAAGTCAGAGAAATAAAAATGACCC
64 GACCGAGATTAAACCACGAGTCA-AAAAATAAAAATGATAG
* * ** * * * * *
3326180 AACTTAAATCATGAGTCAAAAAATGAAAATGAT-GGAAATTAAACCATGAGTTAGAAAATGAAAA
1 GA-TTAAACCATGAGTCAAAAAATGAAAACAATAGG--ATTAAATCACGAGTCAAAAAATAAAAA
* * * * **
3326244 TGA-CTAGGATTAAATCACGAG-CTAGAAAATAAAAAAGACCG
63 TGACCGA-GATTAAACCACGAGTC-AAAAAATAAAAATGATAG
* * * * ** * * * *
3326285 AGATTATACCATGAGTCAGAAAATAAAAATGACCCA-GATTCAATCA-GAATTCAGAAAATGAAA
1 -GATTAAACCATGAGTCAAAAAATGAAAA-CA-ATAGGATTAAATCACG-AGTCAAAAAATAAAA
** * * * * * *
3326348 ACAACTGGGATTAAACCTA-G-GTTAGAAAATGAAAATGACCAG
62 ATGACCGAGATTAAACC-ACGAGTCAAAAAATAAAAATGA-TAG
* * * * * * * *
3326390 GATTAAACCATGGGTTAGAAAAT-AAAAAAGACAGAGATTAAATCATGAGTTAGAAAATGAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACA-ATAG-GATTAAATCACGAGTCAAAAAAT-AAAAA
* *** * * * *
3326454 -AAATTAGGATTAAACCATGGGTCAGAAAATGAAAATGACTAG
63 TGACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * ** * * * * *
3326496 GATTAAACTATGGGTTAAAAAATGAAAATGATCGCAATTAAATCACGAGTTAGAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAATG
* * * ** *
3326561 ATCG-GTATTAAATCACAAG-CTAGGGAAAT-AAAATGATCAA
65 ACCGAG-ATTAAACCACGAGTC-A-AAAAATAAAAATGAT-AG
* * * * * * * * * *
3326601 AATTAAATCACGAGTTAAAAAATGAAAATGATTAAGATTAAACCACAAGTCAGAAAATGAAAACG
1 GATTAAACCATGAGTCAAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAAT-AAAA--
** * * * * * *
3326666 AT-AATGAAAATT--ATCA-GAAT-AAATTACGAGTTAGAAAATGAAAAT
62 ATGACCG-AGATTAAACCACGAGTCAAA--A--A-ATA-AAAATG-ATAG
* * ** ** * ** ** * * *
3326711 GACTGGGATTAAAATGCGAGTTTAAAAATGAAAATGACCAAAATTAAAGCACGAGTCAGAAAATG
1 GA-T--TA-AACCAT--GAGTCAAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATA
* * * * * * * * ** *
3326776 AAAACGACTGGGACTAAACC-CTGAATGAGAAAATGAAAACCACCAG
59 AAAATGACCGAGATTAAACCAC-GAGTCAAAAAATAAAAATGA-TAG
* * * *** * * * * *
3326822 TATCAATCCATGAGTCAAAAAATGAAAGTGATCGAGATTGAA-CAATGAGCCAGAAAATGAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATC-ACGAGTCAAAAAAT-AAAAA
** * * * * * *
3326886 TGATTGGGATTATACCATGAGTCAAAAAATGAAAACGATTG
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* ** * *
3326927 AGATTAAATCATGAGTCAAAAAAT-ACAAATGATAAGGATTAAA-CAAC-ATGTC-AGAAATGAA
1 -GATTAAACCATGAGTCAAAAAATGA-AAACAAT-AGGATTAAATC-ACGA-GTCAAAAAATAAA
* ** * * **
3326988 AATGA-CAAGGATTAAAGTATGAGTCAAAAAATGTAAAACAATAAG
61 AATGACCGA-GATTAAACCACGAGTCAAAAAAT-AAAAATGAT-AG
* * * * * * * *
3327033 GATTAAA--TTGCAAGTCAAAAACTAAAAATGAA-CGAGATTAAACCACGAGTCAGAAAATGAAA
1 GATTAAACCATG--AGTCAAAAAATGAAAA-CAATAG-GATTAAATCACGAGTCAAAAAATAAAA
** * * * * **
3327095 ACAACCAAAATTAAACAACGAGTCAAAAAATGAAAATGACCG
62 ATGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * * ** ** * * ** * * *
3327137 GTGTTAAATCATGAGTCAAAGAAATAAAAATGACCAAAATCAAATTATAAGTCAGATAATGAAAA
1 G-ATTAAACCATGAGTCAAA-AAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAA
* * * * *
3327202 TGATCGAGATTAAATCACTACTCAAAAAACAAAAATGACTAG
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* ** * * ** *
3327244 AATTAAATTATGAGTTAGAAAATAT-AAATGACCAA-A--ATTAAATCATGAGTGTAAAACTAAA
1 GATTAAACCATGAGTCA-AAAA-ATGAAA--A-CAATAGGATTAAATCACGAGTCAAAAAATAAA
** * ** *
3327305 AATGATTGAGATTAAACCACGAGTCAAAAAATTAAAACAACAGG
61 AATGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATA-G
*** * * * * * * * *
3327349 GATTAAACCATGAGTC-AAAAATGAAAACGGCCAAGATGAAACCGCTACTTAGAAAATGAAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAAC-AATAGGATTAAATCACGAGTCAAAAAAT-AAAAAT
* * * * ** *
3327413 GATC-AGGACTAAACCACGAGTCAAAAAATGAAGACCACAGG
64 GACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGATA-G
* * * * * * * * * *
3327454 GATTAAACCATTAGTCAGAGAAATAAAAATGACTAGAATTAAATCATGAGTCAGAAAATGAAAAC
1 GATTAAACCATGAGTCA-AAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAAT
* ** * * * * *
3327519 AATGGAAATTAAACCATGAGTCAAAAAATGAAAATGACCAT
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * *
3327560 GATTAAATCGCA--AGTCAAAAAATAAAAAGGAACAGGATTAAACCACAAGTCAAAAAAT--AAA
1 GATTAAA-C-CATGAGTCAAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAA
* * * * * * *
3327621 TGGCCTAAATTAAATCACGAGTCATAAAATGAAAACGACT-G
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * ** * *
3327662 AGATT-AATCATAAGTC-AAAAATAAAAATGATAAGGATTAAA-CAACGCGTC-AAAAATGGAAA
1 -GATTAAACCATGAGTCAAAAAATGAAAACAAT-AGGATTAAATC-ACGAGTCAAAAAAT-AAAA
* ** * * * * *
3327723 ATTATAGAAATTAAAGCACGAGTCAAAAAATGTAAAATAATGG
62 ATGACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGATAG
* * ** ** * * *
3327766 GGTTAAACACA--AGTCAAAAAGTGAAAATGACCGAGATTAAACCATGAGTCAAAAAATCAAAAT
1 GATTAAAC-CATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAAT
* * * * * *
3327829 GATCAAAATTAAACAATGAGTCAAAAAATGAAAATGATTAG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * * ** * * *
3327870 CATTAAATCACGAGTCAAAAAAATAAAAATGACCAGAATCAAATCATGAGTCGAAAAATGAAATA
1 GATTAAACCATGAGTC-AAAAAATGAAAA-CAATAGGATTAAATCACGAGTC---AAA--AAATA
* * * * * * *
3327935 GATCAAGATTAAACAATCGAAACTAAATCACGAGTC-AGAAA-AAAAATGACCAA
59 -A--AA-A-T-GAC---CGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * * ** * * * * * *
3327988 AATTAAATCATGAATCTAAAACTGAAAATGATCGAGATTAAACCACGAGTTAGAGAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAATG
* * * *
3328053 ACCGTGATGAAACCACCAGTCAAAAAATGAAAAATGATTGG
65 ACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGA-TAG
* * * * * *
3328094 GATTAAACCACGAGTCAAAAAATGAAGACAATGGGGATTAAACCATGAGTCAAAAAAATAAGAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACAAT-AGGATTAAATCACGAGTC-AAAAAATAAAAAT
** * * * * *
3328159 GATTGAAATTAAATCACGAGTCAGAAAATAAAAATTATGG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
** ** * * *
3328199 GAATTAAACCACAAGTCAAAAAATGAAAATGATCGAGATTAAATCATGAGTCAAAAAATGAAAAT
1 G-ATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAAT
* * * *
3328264 AACTGAAATTAAACCACGAGTCAAAAAATAAAAATGACCAG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * ** ** * * *
3328305 GATTAAATCATGAGTCATAAAATGAAAATGACCGAGATTAAA-CTATGGGTCAGAAAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATC-ACGAGTCAAAAAATAAAAAT
** * * * * * * *
3328369 GATTGGGATT-AACCATGGGTTAGAAAATGAAAATGATCG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
** * ** * * * *
3328408 AGATTAAATAATGAGTCAGAAAATGAAAATGATCGGTATTAAATCACAAGCCAATAAAACAAAAA
1 -GATTAAACCATGAGTCAAAAAATGAAAACAATAGG-ATTAAATCACGAGTCAA-AAAATAAAAA
* * * * * * * *
3328473 TGATCGAAATTAAATCATGAGTCAGAAAATGAAAACGATTG
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * ** *
3328514 AGATTAAACTATGAATCAGAAAATGATAATGATAATGAAAATTGCCAAAATTAAAAT-ACGAGTT
1 -GATTAAACCATGAGTC---AAA--A-AATGA-AA--ACAA-T---AGGATT-AAATCACGAGTC
* * * * ** * **
3328578 AGAAAATGAAAATGACC-AGGATTAAAACACCTA-TTGAAAAATGAAAACAACTAG
51 AAAAAATAAAAATGACCGA-GATTAAACCA-CGAGTCAAAAAATAAAAATGA-TAG
* * * * * * * * * * * *
3328632 AATTAAAGCACGAGTTAGAAAATGAAAATGACT-GAGACTAAA-CCCTGAGTGAGAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAA-CAATAG-GATTAAATCAC-GAGTCAAAAAATAAAAA
* * * ** * *
3328695 TCACC-AGAATTAAACCATGAGTCAAAAAATGAAAGCGGTCG
63 TGACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * * * * ** *
3328736 AGATTAAACAACGAGTCAGAAAATGAAAAATAATCAGGATTACACCATTAGTCAAAAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAATG-AAAACAAT-AGGATTAAATCACGAGTCAAAAAATAAAAA
* * * *
3328801 TGA-CTAGGATT-AATCACAAGT-TAAAAATAAAAATGATAGG
63 TGACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGATA-G
* * * *** * * * ** * *
3328841 GA-TAAATCAACGTGTTGGAAAATGAAAACTACAGGGATTAAAGCATAAGTAAAAAAATTTAAAA
1 GATTAAA-CCATGAGTCAAAAAATGAAAACAATA-GGATTAAATCACGAGTCAAAAAA-TAAAAA
* ** * * * *
3328905 TAATGGGGATTGAACCACAAGTCAAAAAGA-GAAAATGATAG
63 TGACCGAGATTAAACCACGAGTCAAAAA-ATAAAAATGATAG
** * * * * ** *
3328946 AGATTAAACCATGAGTCAGCAAATGAAAATGACT-GAAATTAAATGATAAGTCAAAAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAATGAAAA-CAATAG-GATTAAATCACGAGTCAAAAAATAAAAA
* * * * *
3329010 TGATC-AGCATTAAATCACGAGTCAAAGGAAGAAAAAAGATTAG
63 TGACCGAG-ATTAAACCACGAGTCAAA-AAATAAAAATGA-TAG
* * ** * * *
3329053 AATTAAATCACAAGTC--AAAATGAAAA-ATGACTAGGATTGAACCACTAGTC-AAAAA-AAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACA--A-TAGGATTAAATCACGAGTCAAAAAATAAAAA
** * * * * * *
3329113 TGATTGAAATTAAATCACAAGTCAGAAAATAAAAATGACCAA
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * ** ** * * *
3329155 AATTAAATCATGAGTC-TAAAATAAAAATGATCAAAATTAAATCACGAGTCTAGAACTAAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAAT-AGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * * * *
3329219 ACTGAGATTAATCTATGAGTTAGAAATTTAAAATGATAG
65 ACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * ** * * * * * *
3329258 GAATTAAACCACGAGTCAGAGAAA-GAAAATGATCGAGA-TGAATCCACCAATTAGAAAATGAAA
1 G-ATTAAACCATGAGTCA-AAAAATGAAAACAATAG-GATTAAAT-CACGAGTCAAAAAAT-AAA
** * * * *
3329321 AATGATTGGGATTAAACCATGAGTCAGAAAATGAAGAAA--ACGAG
61 AATGACCGAGATTAAACCACGAGTCAAAAAAT-AA-AAATGA-TAG
** * ** *
3329365 GATTAAACCACAAGTCAAAGAAA-GAAAA-ATGACCAAAATT-AATCACGAGTCAAAAAATGAAA
1 GATTAAACCATGAGTCAAA-AAATGAAAACA--A-TAGGATTAAATCACGAGTCAAAAAATAAAA
* * * * * *
3329427 ATGATC-AGTATTAAATCACAAGTTAGAAAATAAAAATGACTGG
62 ATGACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * *
3329470 GATTAAACCACGAGTC-AAAAATAAAAACAACTCA-GATTAAATCACGAGTCAGAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACAA-T-AGGATTAAATCACGAGTCAAAAAATAAAAAT
* ** * * * * * *
3329533 CATTGGGATTAAACTACGGGTCAAAAAATGAAAACGACTAA
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * * * * * *
3329574 GATTAAACCATGGGTTAGAAAATGAAAACAACCAAGATTAAATTACGAGTCAGAAAATGAAAACG
1 GATTAAACCATGAGTCAAAAAATGAAAACAA-TAGGATTAAATCACGAGTCAAAAAATAAAAATG
** * * * *
3329639 A-TTAGTATTAAATCACAAGCCAAAGAAATAAAAATGATCAA
65 ACCGAG-ATTAAACCACGAGTCAAA-AAATAAAAATGAT-AG
* * * * * ** * * *
3329680 AATTCATCCATGAGTTAGAAAATGAAAATGATCGAGATTAAACCATGAGTCAAAAAAAGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTC---------AAA--
* * * ** * * ** *
3329745 ATAATAAAAATTACTG-GAATTTAATTAAGAGTCAGAAAAGGAAAATGATCGG
54 A-AATAAAAATGACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGAT-AG
* * * * * * * * *
3329797 GAGTAAAACGTGAGTTAAAAAATGAAAACAAGCTA-AATTAAAGCACGAGTCAGAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACAA--TAGGATTAAATCACGAGTCAAAAAATAAAAAT
* ** * * * *
3329861 AATTGGGACTAAACC-CTTAGT------A-AGAAA--AT--
64 GACCGAGATTAAACCAC-GAGTCAAAAAATAAAAATGATAG
** * * * * *
3329890 GA--AAACCACCAGTCATAAAATGAAAGCGATCGAGATTAAAT-ATGAGTCAAAAAATGAAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAAT-AAAAAT
* * * * *
3329952 GATCAAGATTATACCACGAGTCAAACAATGAAAATGATAG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * ** *
3329992 GAATTAAATCATAAGTCAAAAAAT-AGAAATGATAGGGATTAAA-CAAC-ACGTCAAAAAATGAA
1 G-ATTAAACCATGAGTCAAAAAATGA-AAACAATA-GGATTAAATC-ACGA-GTCAAAAAATAAA
** * * * * * ** **
3330054 AATGATAGGGATTAAAGCACGAGTTAGAAAATGTAAAACAACGG
61 AATGACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGATAG
* ** * * * * * * * * * * * **
3330098 GGTTAAACTTTAATTCGAAAAGTGAAAATGAAGAAGATTAAACCATGAGTTAGAAAATGCAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAATG
* ** * * *
3330163 ACTG-GAATTAAATGATGAGTCAAAAAATGAAAATGACAAG
65 ACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * * ** * * * * * *
3330203 CATTAAATCAAGAGTCAAAGAAATAAAAATGACCAGAATCAAATCACTAGTTAGAAAATGAAAAT
1 GATTAAACCATGAGTCAAA-AAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAAT
** * * * *
3330268 GACC-AGGATTAAACTGCTAGTCAAGAAACAAAAACGACTAG
64 GACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * * * * ** ** * * * * * *
3330309 AATTAAATCACGAGTTAGAAAATAAAAATGACCAAAATTAAATCATGAGCCTAAAATTGAAAATA
1 GATTAAACCATGAGTCAAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * *
3330374 ATCGGGATTAAACCATGTGTCAAAAAATTAAAATGACAAG
65 ACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * ** ** * * *
3330414 GATTAAACCACGAGTCAGAGAATGAAAATGACCGAGATGAAACCACCAGTCAAAAAATAAAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAAT-AAAAAT
* * * *
3330479 GATCGATATTAAACCACGAGTCAGAAAAAGAAGACAA-CAT-G
64 GACCGAGATTAAACCACGAGTCA-AAAAATAA-A-AATGATAG
* * * ** * * * * ** *
3330520 GATTAAACCATGAGTCAGAGAAATTAAAATGACCAGAATCAAAACATGAGTCAGCAAATAAAAAC
1 GATTAAACCATGAGTCA-AAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAAT
* * * ** *
3330585 GACC-AGGATTAAATCATGAGTCAAAAAACAAAAACAACTGG
64 GACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * * *
3330626 GATTAAACAACGAGTTAGAAAAT-AAAA-AATGACCAGGATTAAATCACGAGTCAGAAAATGAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACAAT----AGGATTAAATCACGAGTCAAAAAATAAAA
* * * * * * **
3330689 AT-AACTACGATTAAACAATGGGTCAAAAAATGAAAACAACTAG
62 ATGACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * * * * * * *
3330732 GATTAAACCATGGGTTAGAAAATGAAAATGACT-GAGATTAAATCACAAGTTAGAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAA-CAATAG-GATTAAATCACGAGTCAAAAAATAAAAAT
* * * * * *
3330796 GGCCAACATTAAATCC-CAAG-CTAGAGAAATAAAAATGATTG
64 GACCGAGATTAAA-CCACGAGTC-A-AAAAATAAAAATGATAG
* * * * * * * *
3330837 AAATTAAATCAAGAGTCAAAAAATAAAAACGATCGAGATTAAACCACAAGTTCAAAAACGAAAAC
1 -GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAG-T------C-AAAA-
* * ** * * *
3330902 AATAGTGAAAATTACCGAAATTAAATTACTAGTCAAAAAATGAAAATGACCAG
55 AATA---AAAATGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* *** * ** ** * * * *
3330955 GATCAAAATGTGAGTTAAAAAATG-AAATGACCGGTATTGAAGCATGAGTCAAAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAGG-ATTAAATCACGAGTCAAAAAATAAAAATG
* * * * *
3331019 A-CTAGGACTAAACC-CTGAGTGAGAAAATGAAAACT-ACTAG
65 ACCGA-GATTAAACCAC-GAGTCAAAAAAT-AAAAATGA-TAG
* * * * * *
3331059 GATTAAACCATGAGTCAAAAAAT-AAAAAAGATAGGGATTAAA-CAATGCGTTAGAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACA-ATA-GGATTAAATC-ACGAGTCAAAAAATAAAAA
** * * *
3331122 TGATAG-GAATTAAAGCACGAGT-AAGAAAATGTAAAA-GAATGGG
63 TGACCGAG-ATTAAACCACGAGTCAA-AAAAT-AAAAATG-AT-AG
** * * * * * * * * *
3331165 GATTAAACCACAAGTCAAAAAGTGAAAATAACCAAGATTAAATCATGAATTAGAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAA-TAGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * *
3331230 ATCAAAATTAAACAACGAGTTC-AAATATGAAAATGATCAG
65 ACCGAGATTAAACCACGAG-TCAAAAAATAAAAATGAT-AG
* * * * * ** *
3331270 CACTAAATCACGAGTCAAAGAAATAAAAATGATAGGAATCAAATCACGAGTCAAAAAATGAAAAA
1 GATTAAACCATGAGTCAAA-AAATGAAAACAATAGG-ATTAAATCACGAGTCAAAAAAT-AAAAA
* * * ** *
3331335 -GATCGAGATTAAACCACTAGTCAAAAAATGAAAACAATTG
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * * * * ** ** * * * * *
3331375 AAACTAAATCACGAGTCAAAAAATAAAAATGACCAAAATTAAATCATGAGTCTAAAACTGAAAAC
1 -GATTAAACCATGAGTCAAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAAT
* * * * *
3331440 AATCTAGATTAAACCATGAGTCAAAAAATTACAACAA-CA-AG
64 GACCGAGATTAAACCACGAGTCAAAAAA-TA-AA-AATGATAG
* * * * ** * * * *
3331481 GATTAAACCATGAGTTAGAGAATGAAAATAACCGAGATGAAACCACCAGTCAAAAAATGAAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAAT-AAAAAT
** * * * * ** *
3331546 GATTGGGATTAAACCACTAGTCAGAAAACAAAAACAATGGG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGAT-AG
* * * ** ** * * *
3331587 GATTAAACCATGAGTAAGAAAAATAAAAATGACCAAAATTAAATCATGAGTTAGAAAATAAAAAA
1 GATTAAACCATGAGTCA-AAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAAT-AAAAA
* * * * * *
3331652 AGA-TGGGAATTAAACCACAAGTCAAAAAATGAAAATGATCG
63 TGACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGATAG
* ** *
3331693 AGATTAAATCACAAGTCAAAAAATAGAAATGACCAA-A--ATTAAACCACGAGTCAAAAAATAAA
1 -GATTAAACCATGAGTCAAAAAAT-GAAA--A-CAATAGGATTAAATCACGAGTCAAAAAATAAA
* * * * * * *
3331755 AATGGCCAAGATTAAATCACAAGTCATAAAATGAAAATGATCG
61 AATGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * * * * * * * * *
3331798 AGATTAAACCATGGGTTAGAAAATAAAAACGATCAGGATT-AACCATGGGTTAGAAAATGAAAAT
1 -GATTAAACCATGAGTCAAAAAATGAAAACAAT-AGGATTAAATCACGAGTCAAAAAATAAAAAT
* * * * *
3331862 GACCGAGATTAAATCATGAGCCAAAAAATGAAAATGATCG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* ** * * * ** * * ** * *
3331902 GTATTAAATCACAAGCCAATGAAATAAAAATGATTGAAATTAAATCATTAGTGAGAAAATAAAAA
1 G-ATTAAACCATGAGTCAA-AAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAA
* * * *
3331967 TGATCGAGATTAAACCACAAATCAAAAAATGAAAATGATAATG
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGAT-A-G
* ** * * * * * * * * * *
3332010 AAAATTAACAAAATTAAATTACAAGTTAGAAAATGAAAATGACTGGGACTAAA-CCCTAAGTGAG
1 --GATTAA-ACCA-T-GAGT-C-A---A-AAAATGAAAA-CAATAGGATTAAATCAC-GAGTCAA
* * * *
3332074 AAAATGAAAATCACC-AGGATTAAACCATGAGTCAGAAAATGAAAAATGATCAG
53 AAAATAAAAATGACCGA-GATTAAACCACGAGTCAAAAAAT-AAAAATGAT-AG
* * * * * *
3332127 GATTACACCACGAGTCAAAAAATAAAAACGATTAGGATTAAATCATGAGT-TAAAAATAAAAGA-
1 GATTAAACCATGAGTCAAAAAATGAAAAC-AATAGGATTAAATCACGAGTCAAAAAATAAAA-AT
** * * * * ** *
3332190 GATAGGGATAAAACAACGTG-CTGGAAAATGAAAACT-ATAGG
64 GACCGAGATTAAACCACGAGTC-AAAAAAT-AAAAATGATA-G
* * * * * *
3332231 GATTAAAGCATGAGTCAAAAAATGTAAAACTATAAGGATTGAACCACAAGTCAAAAAGA-GAAAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACAAT-AGGATTAAATCACGAGTCAAAAA-ATAAAAA
** * ** *
3332295 TGATAGAGATTAAACCATGAGTCAGCAAATAAAAATGATCG
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * ** * *
3332336 AAATTAAACGATGAGTCAAAAAATGAAAATGATCGGCATTAAATCACAAGTCAAAGAAATAAAAA
1 -GATTAAACCATGAGTCAAAAAATGAAAACAATAGG-ATTAAATCACGAGTCAAA-AAATAAAAA
* * * * * *
3332401 TGATCAAAATTAAATCATGAGTCAAAAAATAAAAAATGACTGG
63 TGACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGA-TAG
* ** * * * * *
3332444 GATTAAACCACT-AGTCAAAAAATTAAAATGATCGAAATTAAATCACAAGTCAGAAAATAAATAT
1 GATTAAACCA-TGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAAT
* * * * ** *
3332508 GACCAAAATTAAATCACGAGTC-TAAGGTAAAAATGATCAA
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGAT-AG
* * * * * * ** ** * * *
3332548 AATTAAATCACGAGTCTAAAATTAAAAATGACCGAGATT-AATCCACGAGTTAGAAAATTAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAAT-CACGAGTCAAAAAATAAAAAT
* * * * * *
3332612 GACAG-GAATTAAACCAAGAGTCAGAGAATAAAAACGATCG
64 GACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * * * *
3332652 AGATTAATCCATTAGTCAGAAAATGAAAA-ATGATTAGGATTAAACCATGAGTCAAAAAATGATG
1 -GATTAAACCATGAGTCAAAAAATGAAAACA--A-TAGGATTAAATCACGAGTCAAAAAAT-A-A
* * * *
3332716 AAA--A-CGAGGATTAAACCACAAGT-AAGAGAAACAAAAATGACCAA
60 AAATGACCGA-GATTAAACCACGAGTCAA-A-AAATAAAAATGA-TAG
* * * * * * * * *
3332760 AATTAAATCACGAATCAGAAAATGAAAACAACGAGAATTAAA-CTATGAGTCAAAAAATAAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACAA-TAGGATTAAATC-ACGAGTCAAAAAATAAAAAT
* * * *
3332824 GATCGGGATTAAATCACAAGTCAGAGAAAATAAAAATGACTAG
64 GACCGAGATTAAACCACGAGTCA-A-AAAATAAAAATGA-TAG
* * * * * *
3332867 GATATAAACCACGAGTCAAAAAATAAAAACGACTTGGATTAAATTACGAGTCAAAAAATGAAAAT
1 GAT-TAAACCATGAGTCAAAAAATGAAAAC-AATAGGATTAAATCACGAGTCAAAAAATAAAAAT
** * * * * * * * *
3332932 GATTGGGATTAAACTATGGGTCAGAAAATGAATACGATAG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * * ** * * ** *
3332972 AGATTAAACCATGGGTTAGAGAATGAAAACAACCGAGATTAAATTATGAGTCTGAAAAT-GAAAT
1 -GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAAT
* * ** * *
3333036 CGATC-AGTATTAAATCATAAG-CTAGAGAAATAAAAATGATCAA
64 -GACCGAG-ATTAAACCACGAGTC-A-AAAAATAAAAATGAT-AG
* * * ** * ** * * *
3333079 AATTCAATCACAAGTCAGAAAATGAAAATGATTGAGATTAAAACACGAGTCAGAAAAGGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCA-AAAA--ATAA--
*** ** * *
3333144 ATAAT-AAAAATTTTTGGAATTAAATTAGGAGTCAGAAAATAAAAAATGACTAG
60 A-AATGACCGA------G-ATTAAACCACGAGTCAAAAAAT-AAAAATGA-TAG
* * * * * * * * * *
3333197 GAGTAGAATTCA--AGTTAAAAAAAGAAAATGACCTA-AATTAAAGCACGAGTCAGAAAATGAAA
1 GATTA-AA-CCATGAGTCAAAAAATGAAAA-CA-ATAGGATTAAATCACGAGTCAAAAAATAAAA
** *** * * * * *
3333259 GCGTTTGGGACTAAACC-CTTAGT-----GA-GAAAATGA-A-
62 ATGACCGAGATTAAACCAC-GAGTCAAAAAATAAAAATGATAG
* * * *
3333293 -A--ACCACCA--A-TCAAAAAATGAAAACAATCGAGATTAAATGATGAGTCAAAAAATGAAAAA
1 GATTA-AACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAAT-AAAAA
* * * * * *
3333352 TGATCAAGATTATACCACAAGTCAAAAAATGAATATGATAG
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * * *
3333393 GAATTAAATCATAAGTTAAAAAATAGAAATGACAAT--GATTAAA-CAACGTGTCAAAAAATGAA
1 G-ATTAAACCATGAGTCAAAAAAT-GAAA--ACAATAGGATTAAATC-ACGAGTCAAAAAATAAA
** * * * * * * ** *
3333455 AATGATAGGGATTAAAACATGAGTTAGAAAATGTAAAACAACAGG
61 AATGACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGATA-G
* * ** * * * * * * * * * *
3333500 GATTAAACTATAAGTTGAAAAGTGAAAATGAAGAAGATTAAACCATGAGTTAGAAAATGAAAACG
1 GATTAAACCATGAGTCAAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAATG
* ** * * * * **
3333565 A-CTAGAATTAAATGATGAGTCGAACAATGAAAATGACCG
65 ACCGAG-ATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * * * * * *
3333604 ACATTAAATCATGAGTCAAAGAAATAAAAACAACTAGAATCAAATCATGAGTTAGAAAATAAAAA
1 -GATTAAACCATGAGTCAAA-AAATGAAAACAA-TAGGATTAAATCACGAGTCAAAAAATAAAAA
* * * * * *
3333669 TGATC-AGGATTAAACTACTAGTCTAGAAACAAAAATGACT-G
63 TGACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * * ** * * * * * * * *
3333710 GAATTAAATCACGAGTTAGAAAATAAAAATGATCGAAATTAAATCATGAGCCTAAAATTGAAAAC
1 G-ATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAAT
* * * * * * *
3333775 GACC-AGGATTAAACCATGAGCCTAAAAATTAAAACGACAAA
64 GACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * ** ** * *
3333816 GATTAAACCATGAGTCAGAGAATGAAAATGACCGAGATT-AACCACCAGTCAAAAAATGAAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAAT-AAAAAT
* * * * * * *
3333880 GATCGGGATTAAACCATGAGTTAGACAATGAAGACAA-CA-AG
64 GACCGAGATTAAACCACGAGTCAAAAAAT-AA-A-AATGATAG
* * * ** * * * * * *
3333921 GATTAAACCATGAGTCAGAGAAATAAAAATTACCAGAATCAAAACATGAGTCAGAAAATGAAAAT
1 GATTAAACCATGAGTCA-AAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAAT
* * * * ** **
3333986 GACCGAGATTAAATCATGATTCAGAAAATAAAAACAACCGG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
** * * * * * * * * * *
3334027 GATTAAATAATGAGTC-AAAAATGAAAATGACTAGGATTAAACCATGGGTTAGACAATGAAAA-C
1 GATTAAACCATGAGTCAAAAAATGAAAA-CAATAGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * * * *
3334090 AACTAGGATTAAACCATGGGTTAGAAAATGAAAACGACT-G
65 ACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* * * * *** ** * * *
3334130 AGATTAAATCACGAGTTAGAAAATGAAAATGGTCAACATTAAACCACAAG-CTAAAGAAATCAAA
1 -GATTAAACCATGAGTCAAAAAATGAAAACAAT-AGGATTAAATCACGAGTC-AAA-AAATAAAA
** * * * * * * *
3334194 ATGATTGAAATTAAATCAAGAGTTAGAAAATGAAAATGATCG
62 ATGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * *
3334236 AGATTAAACCACGAGTTC-AAAAATGAAAACAATAATGAAAATTATCGAAATTAAATTACTAGTC
1 -GATTAAACCATGAG-TCAAAAAATGAAAACAAT-A-G---------G--ATTAAATCACGAGTC
* *** ** *
3334300 AAAAAATGAAAATGAAAATGACC-AGGATCAAAATGCGAG-CAAAAAAATAAAAGCGATCG
51 AAAAAAT----A--AAAATGACCGA-GATTAAACCACGAGTC-AAAAAATAAAAATGATAG
* * * * * * * *
3334359 ATATTAAAGCACGAGTCAAAAAATGAAAA-AGACT-GGAACTAAA-CCCTGAGTGAGAAAATGAA
1 -GATTAAACCATGAGTCAAAAAATGAAAACA-A-TAGG-ATTAAATCAC-GAGTCAAAAAATAAA
** * **
3334421 AACCA-CTAGGATTAAACCACGAAACAAAAAATAAAAATGA-ACTG
61 AATGACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGATA--G
* * * * ** ** *
3334465 AATTACATCATAAGTCAAAAAATGAAAATGACCGAGATTAAATCATGAGTCAAAAAATAAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAATG
** * ** *
3334530 ATGGGGATTAAA-CAATATGTC-AAAAATGAAAATGATAG
65 ACCGAGATTAAACCACGA-GTCAAAAAATAAAAATGATAG
* * * * * * * *
3334568 GAATTAAAGCACGAGT-AAGAAAATGTAAAATAATGGGGATTAAACCACAAGTCAAAAAGTGAAA
1 G-ATTAAACCATGAGTCAA-AAAATG-AAAACAAT-AGGATTAAATCACGAGTCAAAAAATAAAA
* * ** * * *
3334632 ATGACAGAGATTAAAACGTGAGTCAGAAAGTGAAAATGATCA-
62 ATGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGAT-AG
* * ** * ** *
3334674 AATTAAACAACAATTCAAAAAA--AAAATGATCAGCATTAAATCACGAGTCAAATAAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACAAT-AGGATTAAATCACGAGTCAAA-AAATAAAAAT
* * * *
3334737 GACC-AGAATCAAATCATGAGTC-AAAAATGAAAAA-GATTG
64 GACCGAG-ATTAAACCACGAGTCAAAAAAT-AAAAATGATAG
** * * * * * *
3334776 AGATTAAACCACT-AGTCAAAAAATGAAAACAACCGAAACTAAATCATGACTCAGAAAATGAAAA
1 -GATTAAACCA-TGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAA
* * * ** * * *
3334840 TGACCAAAATTAAATCATAAGTC-TAAAATCGAAAAACGATCG
63 TGACCGAGATTAAACCACGAGTCAAAAAAT--AAAAATGATAG
* * * * * * * * * *
3334882 AGATTAAACCATGAGTCAGAAAATTACAAA-AACAGGGATTAAACCATGAGTTAGAGAATGAAAT
1 -GATTAAACCATGAGTCAAAAAATGA-AAACAATA-GGATTAAATCACGAGTCAAAAAATAAAAA
* * * *
3334946 TGACCGAGATAAAACCACTAGTCAAAAAATGAAAAACGATCGG
63 TGACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGAT-AG
* * * *
3334989 GATTAAACCACT-AGTCAAAAAATGAAGAGAATAAGGATTAAACCATGAGTCAAAAAAATAAAAA
1 GATTAAACCA-TGAGTCAAAAAATGAAAACAAT-AGGATTAAATCACGAGTC-AAAAAATAAAAA
* * * * * * *
3335053 TGACCAAAATTAAATCATGAGTCAGAAAATAAAAAAGATGG
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * * *
3335094 GAATTAAACCACGAGTCAGAAAATGAAAACGATCGAGATTAAATCACGAGTCAAAAAATAGAAAT
1 G-ATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAAT
** * *
3335159 GATTGAAATTAAACCACGAGTCAAAAAATAAAAATGACCAG
64 GACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* ** * ** * * * * * * * *
3335200 GATTAAATCACAAGTCATAAAATGAAAATGATCGGGATTAAACCATGGGTTAGAAAATGAAAAGG
1 GATTAAACCATGAGTCAAAAAATGAAAACAAT-AGGATTAAATCACGAGTCAAAAAATAAAAATG
* * * * * * **
3335265 ATC-AGGATT-AACCATGGGTTAGAAAATGAAAATGACCG
65 ACCGA-GATTAAACCACGAGTCAAAAAATAAAAATGATAG
* * * * * *
3335303 AGATTAAATCATGAGTCAAAAAATGAAAACGATCGAGATTAAACCTTGAATCAGAAAATGAAAAC
1 -GATTAAACCATGAGTCAAAAAATGAAAACAATAG-GATTAAA---T-CA-C-G--AGTCAAAA-
* * * ** * * * * * *
3335368 AATAATGAAAATTACCAAAATTAAATTATGAGTTAGAAAGTGAAAATGACAAG
55 AAT-A--AAAATGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGA-TAG
* ** * * * * *
3335421 GATTAAAACGCCT--GTTGAAAAATGAAAACAACTAGAATTAAAGCACGAGTTAGAAAATGAAAA
1 GATT-AAAC-CATGAGTCAAAAAATGAAAACAA-TAGGATTAAATCACGAGTCAAAAAATAAAAA
* * * * * * ** *
3335484 TGACTGGGACTAAACC-CTGAGTGAGAAAATGAAAACCACAAG
63 TGACCGAGATTAAACCAC-GAGTCAAAAAATAAAAATGA-TAG
* * * * *
3335526 GATTAAACCGTGAGTCAAAAAATGAAAGCAATTGGGATTAAATTACGAGT-TAAAAATAAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACAA-TAGGATTAAATCACGAGTCAAAAAATAAAAATG
** * * * * * *** * *
3335590 ATAGGGATAAAACAATGTGTTGGAAAATGAAAACT-ACAAG
65 ACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGA-TAG
* ** * * *
3335630 GATTAAAGCATGAGTCAAAAAATGTAAAACAACGGGGATTAAACCACAAGTCAAAAAGAGAAAAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACAA-TAGGATTAAATCACGAGTCAAAAA-ATAAAAA
** * * ** *
3335695 -GATAGAGATTAAACCATGACTCAGCAAATGAAAATGATCAG
63 TGACCGAGATTAAACCACGAGTCAAAAAATAAAAATGAT-AG
* * * ** * *
3335736 AATTAAACGATGGGT-AAAAAATTGAAAATGATTGGCATTAAATCACGAGTCAAAGAAATATAAA
1 GATTAAACCATGAGTCAAAAAA-TGAAAACAATAGG-ATTAAATCACGAGTCAAA-AAATAAAAA
* *
3335800 TGACCTGA-ATTAAATCAC-ATGTCAAAAAATGAAAAATGACTGG
63 TGACC-GAGATTAAACCACGA-GTCAAAAAAT-AAAAATGA-TAG
* * ** * * * *
3335843 GATTGAACCACT-AGTCAAAAAATTAAAATGATCGAAATTAAATCACAAGT---TAAA-AAAAAT
1 GATTAAACCA-TGAGTCAAAAAATGAAAACAATAG-GATTAAATCACGAGTCAAAAAATAAAAAT
* * * * * * **
3335903 GAACAAAATTAAATCACGAGTC-TAAAATAAAAAACGACCG
64 GACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGATAG
* * * * * * * * * * *
3335943 AGATTAATCCATGAGTTAGAAAATTAAAACGATAAGAATTAAACCATGAGTCAGAGAATGAAAAT
1 -GATTAAACCATGAGTCAAAAAATGAAAACAAT-AGGATTAAATCACGAGTCAAAAAATAAAAAT
** * * * *
3336008 GACCGAGAAGAATCCACTAGTCAGAAAATGAAAAATGATTG
64 GACCGAGATTAAACCACGAGTCAAAAAAT-AAAAATGATAG
* * *
3336049 GAATTAAA-CATGAGTCAGAAAAAAAAGAAAACGACCT-GGATTAAATCACGAGTCAGAAAATGA
1 G-ATTAAACCATGAGTC---AAAAAATGAAAAC-A-ATAGGATTAAATCACGAGTCAAAAAAT-A
** * * *
3336112 AAAATGATTGGCGATTAAACTACTG-GTCAAGAAAAT-GAAATGACTA-
59 AAAATGA-CCGAGATTAAACCAC-GAGTCAA-AAAATAAAAATGA-TAG
* *
3336158 GAATAAACCATGGAGTTCAGAAAATGAAAAC
1 GATTAAACCAT-GAG-TCAAAAAATGAAAAC
3336189 NNNNNNNNNN
Statistics
Matches: 9732, Mismatches: 2775, Indels: 1797
0.68 0.19 0.13
Matches are distributed among these distances:
89 2 0.00
90 13 0.00
91 71 0.01
92 19 0.00
93 5 0.00
95 1 0.00
96 2 0.00
97 3 0.00
98 13 0.00
99 9 0.00
100 15 0.00
101 81 0.01
102 129 0.01
103 398 0.04
104 1235 0.13
105 2824 0.29
106 2923 0.30
107 757 0.08
108 236 0.02
109 89 0.01
110 45 0.00
111 49 0.01
112 24 0.00
113 25 0.00
114 28 0.00
115 81 0.01
116 109 0.01
117 265 0.03
118 162 0.02
119 31 0.00
120 24 0.00
121 4 0.00
122 5 0.00
123 54 0.01
124 1 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (103 bp):
GATTAAACCATGAGTCAAAAAATGAAAACAATAGGATTAAATCACGAGTCAAAAAATAAAAATGA
CCGAGATTAAACCACGAGTCAAAAAATAAAAATGATAG
Found at i:3323177 original size:174 final size:174
Alignment explanation
Indices: 3322854--3323177 Score: 386
Period size: 174 Copynumber: 1.9 Consensus size: 174
3322844 AATGACCGAG
* * *
3322854 ATTAAACCACAAGTCAAAAAATAAAAATGACCAAAATTAAATGATGAGCGAAAAAATGAAAATGA
1 ATTAAACCACAAGTCAAAAAATAAAAATGACCAAAATTAAATCACGAGCGAAAAAATAAAAATGA
* * ** * *
3322919 CTAGCATTAAATCATGAGTCAAAGAAATAAAAATGATTGGAATCAAATCACAAGTCAAAAAATCA
66 CTAGCATTAAACCATGAGTCAAAGAAATAAAAACGAAAGGAATCAAACCACAAGTCAAAAAATAA
* *
3322984 AATGACCAGGATTAAACCACTAGCAAAAAATGAAAACAACTAGA
131 AACGACCAGGATGAAACCACTAGCAAAAAATGAAAACAACTAGA
* * * *
3323028 ATTAAATCACAAGTCAAAATATAAAAATGACCAAAATTAAATCACGAGTC-TAAAACTAAAAATG
1 ATTAAACCACAAGTCAAAAAATAAAAATGACCAAAATTAAATCACGAG-CGAAAAAATAAAAATG
* * * **
3323092 A-TCAGGATTAAACCATGAGTCAAA-AAATTAAAACGACAAGG-ATTAAACCATGAGTCAAAAAA
65 ACT-AGCATTAAACCATGAGTCAAAGAAATAAAAACGA-AAGGAATCAAACCACAAGTCAAAAAA
**
3323154 TGAAAACGACCTTGATGAAACCAC
128 T-AAAACGACCAGGATGAAACCAC
3323178 CAGTCATAAA
Statistics
Matches: 124, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
173 29 0.23
174 94 0.76
175 1 0.01
ACGTcount: A:0.54, C:0.15, G:0.12, T:0.19
Consensus pattern (174 bp):
ATTAAACCACAAGTCAAAAAATAAAAATGACCAAAATTAAATCACGAGCGAAAAAATAAAAATGA
CTAGCATTAAACCATGAGTCAAAGAAATAAAAACGAAAGGAATCAAACCACAAGTCAAAAAATAA
AACGACCAGGATGAAACCACTAGCAAAAAATGAAAACAACTAGA
Found at i:3323889 original size:18 final size:17
Alignment explanation
Indices: 3323844--3323890 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
3323834 AGATTAAACC
*
3323844 ATGAGTCAAAAAATGAAA
1 ATGAGTC-AAAAATAAAA
*
3323862 ATGA-TCAAAATTAAAA
1 ATGAGTCAAAAATAAAA
3323878 GATGAGTCAAAAA
1 -ATGAGTCAAAAA
3323891 ATGAAAACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 8 0.33
17 6 0.25
18 10 0.42
ACGTcount: A:0.60, C:0.06, G:0.15, T:0.19
Consensus pattern (17 bp):
ATGAGTCAAAAATAAAA
Found at i:3324431 original size:34 final size:37
Alignment explanation
Indices: 3324351--3324439 Score: 103
Period size: 34 Copynumber: 2.5 Consensus size: 37
3324341 GATAAACGAT
* * * *
3324351 GAGTCAAAAAATGAAAACATGACTAGGATTATACCAT
1 GAGTCAAAAAATGAAAATATCACTAGGATTAAACCAC
*
3324388 GAGTCAAAAAATGAAAATA-CAC-AGG-TTAAATCAC
1 GAGTCAAAAAATGAAAATATCACTAGGATTAAACCAC
*
3324422 GAGTCAAAAAATTAAAAT
1 GAGTCAAAAAATGAAAAT
3324440 GACAGGGAGT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
34 23 0.50
35 3 0.07
36 2 0.04
37 18 0.39
ACGTcount: A:0.53, C:0.12, G:0.15, T:0.20
Consensus pattern (37 bp):
GAGTCAAAAAATGAAAATATCACTAGGATTAAACCAC
Found at i:3325052 original size:72 final size:70
Alignment explanation
Indices: 3324934--3325144 Score: 228
Period size: 72 Copynumber: 3.0 Consensus size: 70
3324924 AATGAAGACA
* * * * *
3324934 ATGGGGATTAAACCACGAGTCAAAGAAATAAAAGTGACCAAAATTAAATCGTGAGTTAAAAAATT
1 ATGGGAATTAAACCACGAGTCAGA-AAATAAAAATGACCAAGATTAAATC-TGAGTCAAAAAATT
3324999 AAAAAAG
64 AAAAAAG
** *
3325006 ATGGGAATTAAACCACGAGTCAGAAAATGAAAAATGACTGAGATTAAATCACGAGTCAAAAAA-T
1 ATGGGAATTAAACCACGAGTCAGAAAAT-AAAAATGACCAAGATTAAATC-TGAGTCAAAAAATT
3325070 AAAAAAG
64 AAAAAAG
*** * * *
3325077 A-CCAAGATTAAACCATGAGTCAGAAAATAAAAATGACCCAGATTAAATCTCGAGTCAAAAAATG
1 ATGGGA-ATTAAACCACGAGTCAGAAAATAAAAATGACCAAGATTAAATCT-GAGTCAAAAAATT
3325141 AAAA
64 AAAA
3325145 CGACCAGGAT
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
70 31 0.26
71 38 0.32
72 49 0.42
ACGTcount: A:0.53, C:0.12, G:0.17, T:0.18
Consensus pattern (70 bp):
ATGGGAATTAAACCACGAGTCAGAAAATAAAAATGACCAAGATTAAATCTGAGTCAAAAAATTAA
AAAAG
Found at i:3325305 original size:72 final size:70
Alignment explanation
Indices: 3325023--3325336 Score: 213
Period size: 71 Copynumber: 4.4 Consensus size: 70
3325013 TTAAACCACG
* * * * * *
3325023 AGTCAGAAAATGAAAAATGA-CTGAGATTAAATCACGAGTCAAAAAATAAAAAAGACC-AAGATT
1 AGTCAAAAAATG-AAAACGATC-GAGATTAAATCACAAGTTAGAAAATAAAAACGACCGAA-ATT
* *
3325086 AAACCATG
63 AAATCATA
* * * * * * * * * * * *
3325094 AGTCAGAAAATAAAAATGACCCAGATTAAATCTCGAGTCAAAAAATGAAAACGACCAGGATTTAA
1 AGTCAAAAAATGAAAACGATCGAGATTAAATCACAAGTTAGAAAATAAAAACGACC-GAAATTAA
* *
3325159 CT-ATG
65 ATCATA
* * * * * *** * *
3325164 GGTCAAAAAATAAAAAATGATCGGGATTAAACCATGGGTTAGAAAATTAAAACGACCGAGATTAA
1 AGTCAAAAAAT-GAAAACGATCGAGATTAAATCACAAGTTAGAAAATAAAAACGACCGAAATTAA
3325229 ATCATA
65 ATCATA
* *
3325235 AGTCAAAAAAGTGAAAACGATC-AGTATTAAATCACAAGTTAGAGAAATAAAAATGATCGAAATT
1 AGTCAAAAAA-TGAAAACGATCGAG-ATTAAATCACAAGTTAGA-AAATAAAAACGACCGAAATT
3325299 AAATCATA
63 AAATCATA
*
3325307 AGTCAGAAAATGAAAACGATCGAGATTAAA
1 AGTCAAAAAATGAAAACGATCGAGATTAAA
3325337 CCATGAGTCA
Statistics
Matches: 195, Mismatches: 39, Indels: 18
0.77 0.15 0.07
Matches are distributed among these distances:
70 57 0.29
71 101 0.52
72 37 0.19
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (70 bp):
AGTCAAAAAATGAAAACGATCGAGATTAAATCACAAGTTAGAAAATAAAAACGACCGAAATTAAA
TCATA
Found at i:3325369 original size:72 final size:72
Alignment explanation
Indices: 3325224--3325371 Score: 169
Period size: 72 Copynumber: 2.1 Consensus size: 72
3325214 AACGACCGAG
* * *
3325224 ATTAAATCATAAGTCAAAAAAGTGAAAACGATCAGTATTAAATCACAAGTTAGAGAAATAAAAAT
1 ATTAAATCATAAGTCAAAAAAGTGAAAACGATCAGTATTAAACCACAAGTCAGAGAAAAAAAAAT
*
3325289 GATCGAA
66 AATCGAA
* **
3325296 ATTAAATCATAAGTCAGAAAA-TGAAAACGATCGAG-ATTAAACCATGAGTCAG-GAAACGAAAA
1 ATTAAATCATAAGTCAAAAAAGTGAAAACGATC-AGTATTAAACCACAAGTCAGAGAAA--AAAA
3325358 CAATAAT-GAA
63 -AATAATCGAA
3325368 ATTA
1 ATTA
3325372 CCGAAATTAA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
70 4 0.06
71 24 0.37
72 32 0.49
73 5 0.08
ACGTcount: A:0.53, C:0.11, G:0.15, T:0.21
Consensus pattern (72 bp):
ATTAAATCATAAGTCAAAAAAGTGAAAACGATCAGTATTAAACCACAAGTCAGAGAAAAAAAAAT
AATCGAA
Found at i:3326393 original size:139 final size:140
Alignment explanation
Indices: 3326145--3326453 Score: 385
Period size: 139 Copynumber: 2.2 Consensus size: 140
3326135 AAATAATGGG
* *
3326145 GATTAAACCATAAGTCAGAGAAATAAAAATGACCCAACTTAAATCATGAGTCAAAAAATGAAAAT
1 GATTAAACCATGAGTCAGA-AAATAAAAATGACCCAACTTAAATCATGAGTCAAAAAATGAAAAC
* * *
3326210 GATGGAAATTAAACCATGAGTTAGAAAATGAAAATGACTAGGATTAAATCACGAGCTAGAAAATA
65 AATGGAAATTAAACCATGAGTTAGAAAATGAAAATGACCAGGATTAAACCACGAGCTAGAAAATA
*
3326275 AAAAAGACCGA
130 AAAAAGACAGA
* * * *
3326286 GATTATACCATGAGTCAGAAAATAAAAATGACCCAGA-TTCAATCA-GAATTCAGAAAATGAAAA
1 GATTAAACCATGAGTCAGAAAATAAAAATGACCCA-ACTTAAATCATG-AGTCAAAAAATGAAAA
* * * *
3326349 CAACTGG-GATTAAACC-T-AGGTTAGAAAATGAAAATGACCAGGATTAAACCATGGGTTAGAAA
64 CAA-TGGAAATTAAACCATGA-GTTAGAAAATGAAAATGACCAGGATTAAACCACGAGCTAGAAA
3326411 ATAAAAAAGACAGA
127 ATAAAAAAGACAGA
* *
3326425 GATTAAATCATGAGTTAGAAAATGAAAAA
1 GATTAAACCATGAGTCAGAAAAT-AAAAA
3326454 AAATTAGGAT
Statistics
Matches: 146, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
138 1 0.01
139 73 0.50
140 51 0.35
141 21 0.14
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (140 bp):
GATTAAACCATGAGTCAGAAAATAAAAATGACCCAACTTAAATCATGAGTCAAAAAATGAAAACA
ATGGAAATTAAACCATGAGTTAGAAAATGAAAATGACCAGGATTAAACCACGAGCTAGAAAATAA
AAAAGACAGA
Found at i:3327483 original size:176 final size:176
Alignment explanation
Indices: 3327301--3327617 Score: 406
Period size: 176 Copynumber: 1.8 Consensus size: 176
3327291 AGTGTAAAAC
* * *
3327301 TAAAAATGA-TTGAGATTAAACCACGAGTCAAAAAATTAAAACAACAGG-GATTAAACCATGAGT
1 TAAAAATGACTAGA-ATTAAACCACGAGTCAAAAAATGAAAACAA-AGGAAATTAAACCATGAGT
* * * * * *
3327364 C-AAAAATGAAAACGGCCAAGATGAAACCGCTACTTAGAAAATGAAAAATGATCAGGACTAAACC
64 CAAAAAATGAAAACGACCAAGATGAAACCGCAACTCAAAAAAT-AAAAAGGAACAGGACTAAACC
*
3327428 ACGAGTCAAAAAATGAAGACCACAGGGATTAAACCATTAGTCAGAGAAA
128 ACAAGTCAAAAAATGAAGACCACAGGGATTAAACCATTAGTCAGAGAAA
* * * *
3327477 TAAAAATGACTAGAATTAAATCATGAGTCAGAAAATGAAAACAATGGAAATTAAACCATGAGTCA
1 TAAAAATGACTAGAATTAAACCACGAGTCAAAAAATGAAAACAAAGGAAATTAAACCATGAGTCA
* * * * * *
3327542 AAAAATGAAAATGACCATGATTAAATCGCAAGTCAAAAAATAAAAAGGAACAGGATTAAACCACA
66 AAAAATGAAAACGACCAAGATGAAACCGCAACTCAAAAAATAAAAAGGAACAGGACTAAACCACA
3327607 AGTCAAAAAAT
131 AGTCAAAAAAT
3327618 AAATGGCCTA
Statistics
Matches: 118, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
175 2 0.02
176 81 0.69
177 35 0.30
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.17
Consensus pattern (176 bp):
TAAAAATGACTAGAATTAAACCACGAGTCAAAAAATGAAAACAAAGGAAATTAAACCATGAGTCA
AAAAATGAAAACGACCAAGATGAAACCGCAACTCAAAAAATAAAAAGGAACAGGACTAAACCACA
AGTCAAAAAATGAAGACCACAGGGATTAAACCATTAGTCAGAGAAA
Found at i:3327854 original size:18 final size:18
Alignment explanation
Indices: 3327801--3327854 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
3327791 AATGACCGAG
*
3327801 ATTAAACCATGAGTCAAAA
1 ATTAAACAATGAGTC-AAA
* *
3327820 AATCAA-AATGA-TCAAA
1 ATTAAACAATGAGTCAAA
3327836 ATTAAACAATGAGTCAAA
1 ATTAAACAATGAGTCAAA
3327854 A
1 A
3327855 AATGAAAATG
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
16 7 0.25
17 7 0.25
18 10 0.36
19 4 0.14
ACGTcount: A:0.57, C:0.13, G:0.09, T:0.20
Consensus pattern (18 bp):
ATTAAACAATGAGTCAAA
Found at i:3327864 original size:18 final size:18
Alignment explanation
Indices: 3327809--3327865 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
3327799 AGATTAAACC
*
3327809 ATGAGTCAAAAAATCAAA
1 ATGAGTCAAAAAATAAAA
*
3327827 ATGA-TC-AAAATTAAACA
1 ATGAGTCAAAAAATAAA-A
*
3327844 ATGAGTCAAAAAATGAAA
1 ATGAGTCAAAAAATAAAA
3327862 ATGA
1 ATGA
3327866 TTAGCATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
16 7 0.22
17 7 0.22
18 11 0.34
19 7 0.22
ACGTcount: A:0.60, C:0.09, G:0.12, T:0.19
Consensus pattern (18 bp):
ATGAGTCAAAAAATAAAA
Found at i:3328014 original size:82 final size:84
Alignment explanation
Indices: 3327873--3328030 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 84
3327863 TGATTAGCAT
* *
3327873 TAAATCACGAGTCAAAAAAATAAAAATGACCAGAATCAAATCATGAGTCGAAAAATG-AAATAGA
1 TAAATCACGAGTC-AAAAAATAAAAATGACCAAAATCAAATCATGAATCGAAAAATGAAAAT-GA
3327937 TCAAGATTAAACAATCGAAAC
64 TCAAGATTAAACAATCGAAAC
* * * *
3327958 TAAATCACGAGTC-AGAAA-AAAAATGACCAAAATTAAATCATGAATCTAAAACTGAAAATGATC
1 TAAATCACGAGTCAAAAAATAAAAATGACCAAAATCAAATCATGAATCGAAAAATGAAAATGATC
*
3328021 GAGATTAAAC
66 AAGATTAAAC
3328031 CACGAGTTAG
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
82 44 0.68
83 8 0.12
85 13 0.20
ACGTcount: A:0.54, C:0.14, G:0.13, T:0.19
Consensus pattern (84 bp):
TAAATCACGAGTCAAAAAATAAAAATGACCAAAATCAAATCATGAATCGAAAAATGAAAATGATC
AAGATTAAACAATCGAAAC
Found at i:3329176 original size:34 final size:34
Alignment explanation
Indices: 3329053--3329220 Score: 151
Period size: 34 Copynumber: 4.9 Consensus size: 34
3329043 AAAAGATTAG
* * *
3329053 AATTAAATCACAAGTC-AAAATGAAAAATGACTAG
1 AATTAAATCACGAGTCTAAAAT-AAAAATGACCAA
* * * * * ***
3329087 GATTGAACCACTAGTC-AAAAAAAAAATGATTGA
1 AATTAAATCACGAGTCTAAAATAAAAATGACCAA
* *
3329120 AATTAAATCACAAGTCAGAAAATAAAAATGACCAA
1 AATTAAATCACGAGTC-TAAAATAAAAATGACCAA
* *
3329155 AATTAAATCATGAGTCTAAAATAAAAATGATCAA
1 AATTAAATCACGAGTCTAAAATAAAAATGACCAA
*
3329189 AATTAAATCACGAGTCTAGAACTAAAAATGAC
1 AATTAAATCACGAGTCTA-AAATAAAAATGAC
3329221 TGAGATTAAT
Statistics
Matches: 108, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
33 21 0.19
34 49 0.45
35 38 0.35
ACGTcount: A:0.55, C:0.12, G:0.11, T:0.21
Consensus pattern (34 bp):
AATTAAATCACGAGTCTAAAATAAAAATGACCAA
Found at i:3329229 original size:69 final size:65
Alignment explanation
Indices: 3329053--3329277 Score: 188
Period size: 69 Copynumber: 3.3 Consensus size: 65
3329043 AAAAGATTAG
* *
3329053 AATTAAATCACAAGTCA-AAATGAAAAATGACTAGGATTGAACCACT-AGTC-AAAAAAAAAATG
1 AATTAAATCACAAGTCAGAAAT-AAAAATGACTA-GATT-AATCA-TGAGTCTAAAATAAAAATG
*
3329115 ATTGA
62 A-TAA
* *
3329120 AATTAAATCACAAGTCAGAAAATAAAAATGACCAAAATTAAATCATGAGTCTAAAATAAAAATGA
1 AATTAAATCACAAGTCAG-AAATAAAAATGA-CTAGATT-AATCATGAGTCTAAAATAAAAATGA
3329185 TCAA
63 T-AA
* * *
3329189 AATTAAATCACGAGTCTAGAACTAAAAATGACTGAGATTAATCTATGAGT-TAGAAATTTAAAAT
1 AATTAAATCACAAGTC-AGAAATAAAAATGACT-AGATTAATC-ATGAGTCTA-AAA-TAAAAAT
*
3329253 GATAGG
61 GATA-A
* *
3329259 AATTAAACCACGAGTCAGA
1 AATTAAATCACAAGTCAGA
3329278 GAAAGAAAAT
Statistics
Matches: 133, Mismatches: 13, Indels: 22
0.79 0.08 0.13
Matches are distributed among these distances:
67 18 0.14
68 27 0.20
69 62 0.47
70 26 0.20
ACGTcount: A:0.52, C:0.12, G:0.13, T:0.23
Consensus pattern (65 bp):
AATTAAATCACAAGTCAGAAATAAAAATGACTAGATTAATCATGAGTCTAAAATAAAAATGATAA
Found at i:3329287 original size:35 final size:35
Alignment explanation
Indices: 3328562--3329747 Score: 265
Period size: 35 Copynumber: 33.9 Consensus size: 35
3328552 AAATTGCCAA
** * *
3328562 AATTAAAATACGAGTTAGAAAATGAAAATGACCAGG
1 AATTAAACCACGAGTCAGAAAATGAAAATGA-TAGG
* * * * **
3328598 -ATTAAAACACCTATTGA-AAAATGAAAACAACTA-G
1 AATTAAACCA-CGAGTCAGAAAATGAAAATGA-TAGG
* *
3328632 AATTAAAGCACGAGTTAGAAAATGAAAATGACT--G
1 AATTAAACCACGAGTCAGAAAATGAAAATGA-TAGG
* * * *
3328666 AGACTAAACC-CTGAGTGAGAAAATGAAAATCACCA-G
1 A-ATTAAACCAC-GAGTCAGAAAATGAAAATGA-TAGG
* * ** * *
3328702 AATTAAACCATGAGTCAAAAAATGAAAGCGGT-CG
1 AATTAAACCACGAGTCAGAAAATGAAAATGATAGG
* *
3328736 AGATTAAACAACGAGTCAGAAAATGAAAAATAATCAGG
1 A-ATTAAACCACGAGTCAGAAAATG-AAAATGAT-AGG
* ** *
3328774 -ATTACACCATTAGTCAAAAAATGAAAATGACTAGG
1 AATTAAACCACGAGTCAGAAAATGAAAATGA-TAGG
* * * *
3328809 -ATT-AATCACAAGTTA-AAAATAAAAATGATAGG
1 AATTAAACCACGAGTCAGAAAATGAAAATGATAGG
* * * ** *
3328841 GA-TAAATCAACGTGTTGGAAAATGAAAACT-ACAGG
1 AATTAAA-CCACGAGTCAGAAAATGAAAA-TGATAGG
* * ** * * * * *
3328876 GATTAAAGCATAAGTAAAAAAATTTAAAATAATGGG
1 AATTAAACCACGAGTCAGAAAA-TGAAAATGATAGG
* * * *
3328912 GATTGAACCACAAGTCA-AAAAGAGAAAATGATA-G
1 AATTAAACCACGAGTCAGAAAA-TGAAAATGATAGG
* * *
3328946 AGATTAAACCATGAGTCAGCAAATGAAAATGACT-GA
1 A-ATTAAACCACGAGTCAGAAAATGAAAATGA-TAGG
** ** *
3328982 AATTAAATGATAAGTCAAAAAATGAAAATGATCA-G
1 AATTAAACCACGAGTCAGAAAATGAAAATGAT-AGG
* * *
3329017 CATTAAATCACGAGTCA-AAGGAA-GAAAAAAGATTA-G
1 AATTAAACCACGAGTCAGAA--AATG-AAAATGA-TAGG
* *
3329053 AATTAAATCACAAGTC--AAAATGAAAAATGACTAGG
1 AATTAAACCACGAGTCAGAAAATG-AAAATGA-TAGG
* * * * *
3329088 -ATTGAACCACTAGTCA-AAAA-AAAAATGATTGA
1 AATTAAACCACGAGTCAGAAAATGAAAATGATAGG
* * * * *
3329120 AATTAAATCACAAGTCAGAAAATAAAAATGACCA-A
1 AATTAAACCACGAGTCAGAAAATGAAAATGA-TAGG
* * * * *
3329155 AATTAAATCATGAGTC-TAAAATAAAAATGATCA-A
1 AATTAAACCACGAGTCAGAAAATGAAAATGAT-AGG
* * *
3329189 AATTAAATCACGAGTCTAG-AACTAAAAATGACT--G
1 AATTAAACCACGAGTC-AGAAAATGAAAATGA-TAGG
* * * * * *
3329223 AGATTAATCTATGAGTTAGAAATTTAAAATGATAGG
1 A-ATTAAACCACGAGTCAGAAAATGAAAATGATAGG
*
3329259 AATTAAACCACGAGTCAGAGAAA-GAAAATGAT-CG
1 AATTAAACCACGAGTCAGA-AAATGAAAATGATAGG
* * * * * *
3329293 AGATGAATCCACCAATTAGAAAATGAAAAATGATTGG
1 A-ATTAAACCACGAGTCAGAAAATG-AAAATGATAGG
* * * *
3329330 GATTAAACCATGAGTCAGAAAATGAAGAA-AACGAGG
1 AATTAAACCACGAGTCAGAAAATGAA-AATGA-TAGG
* * * *
3329366 -ATTAAACCACAAGTCA-AAGAAAGAAAAATGACCA-A
1 AATTAAACCACGAGTCAGAA-AATG-AAAATGA-TAGG
* *
3329401 AATT-AATCACGAGTCAAAAAATGAAAATGATCA-G
1 AATTAAACCACGAGTCAGAAAATGAAAATGAT-AGG
* * * * *
3329435 TATTAAATCACAAGTTAGAAAATAAAAATGACT-GG
1 AATTAAACCACGAGTCAGAAAATGAAAATGA-TAGG
* * **
3329470 GATTAAACCACGAGTCA-AAAATAAAAACAACTCA-G
1 AATTAAACCACGAGTCAGAAAATGAAAATGA-T-AGG
* ** *
3329505 -ATTAAATCACGAGTCAGAAAATGAAAACCATTGG
1 AATTAAACCACGAGTCAGAAAATGAAAATGATAGG
* * * * * *
3329539 GATTAAACTACGGGTCAAAAAATGAAAACGACTAAG
1 AATTAAACCACGAGTCAGAAAATGAAAATGA-TAGG
* * * ** * *
3329575 -ATTAAACCATGGGTTAGAAAATGAAAACAACCAAG
1 AATTAAACCACGAGTCAGAAAATGAAAATGA-TAGG
** *
3329610 -ATTAAATTACGAGTCAGAAAATGAAAACGATTA-G
1 AATTAAACCACGAGTCAGAAAATGAAAATGA-TAGG
* * * * * * *
3329644 TATTAAATCACAAGCCAAAGAAATAAAAATGATCA-A
1 AATTAAACCACGAGTCAGA-AAATGAAAATGAT-AGG
* * * * *
3329680 AATTCATCCATGAGTTAGAAAATGAAAATGAT-CG
1 AATTAAACCACGAGTCAGAAAATGAAAATGATAGG
* * *
3329714 AGATTAAACCATGAGTCAAAAAAAGAAAATGATA
1 A-ATTAAACCACGAGTCAGAAAATGAAAATGATA
3329748 ATAAAAATTA
Statistics
Matches: 861, Mismatches: 215, Indels: 148
0.70 0.18 0.12
Matches are distributed among these distances:
32 7 0.01
33 37 0.04
34 136 0.16
35 526 0.61
36 152 0.18
37 2 0.00
38 1 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (35 bp):
AATTAAACCACGAGTCAGAAAATGAAAATGATAGG
Found at i:3329509 original size:69 final size:70
Alignment explanation
Indices: 3329310--3329580 Score: 219
Period size: 69 Copynumber: 3.9 Consensus size: 70
3329300 TCCACCAATT
* * * * * *
3329310 AGAAAATGAAAAATGATTGGGATTAAACCATGAGTCAGAAAATGAAGAA-AAC-GAGGATTAAAC
1 AGAAAAT-AAAAATGACTGGGATTAAACCACGAGTCAAAAAAT-AAAAACAACTCA-GATTAAAT
3329373 CACAAGTC
63 CACAAGTC
* * **** * * **
3329381 AAAGAAAGAAAAATGACCAAAATT-AATCACGAGTCAAAAAATGAAAATGA-TCAGTATTAAATC
1 AGA-AAATAAAAATGACTGGGATTAAACCACGAGTCAAAAAATAAAAACAACTCAG-ATTAAATC
*
3329444 ACAAGTT
64 ACAAGTC
3329451 AGAAAATAAAAATGACTGGGATTAAACCACGAGTC-AAAAATAAAAACAACTCAGATTAAATCAC
1 AGAAAATAAAAATGACTGGGATTAAACCACGAGTCAAAAAATAAAAACAACTCAGATTAAATCAC
*
3329515 GAGTC
66 AAGTC
* ** * * * * * *
3329520 AGAAAATGAAAACCATTGGGATTAAACTACGGGTCAAAAAATGAAAACGACTAAGATTAAA
1 AGAAAATAAAAATGACTGGGATTAAACCACGAGTCAAAAAATAAAAACAACTCAGATTAAA
3329581 CCATGGGTTA
Statistics
Matches: 156, Mismatches: 37, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
69 72 0.46
70 68 0.44
71 13 0.08
72 3 0.02
ACGTcount: A:0.53, C:0.13, G:0.17, T:0.18
Consensus pattern (70 bp):
AGAAAATAAAAATGACTGGGATTAAACCACGAGTCAAAAAATAAAAACAACTCAGATTAAATCAC
AAGTC
Found at i:3330493 original size:36 final size:35
Alignment explanation
Indices: 3329892--3332933 Score: 675
Period size: 35 Copynumber: 85.8 Consensus size: 35
3329882 AAGAAAATGA
* * * ** *
3329892 AAACCACCAGTCATAAAATGAAAGCGATCGAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * *
3329927 AAA-TATGAGTCAAAAAATGAAAAATGATCAAGATT
1 AAACCACGAGTCAAAAAAT-AAAAATGACCGAGATT
* * * **
3329962 ATACCACGAGTCAAACAATGAAAATGATAG-GAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAG-ATT
* ** * ** *
3329997 AAATCATAAGTCAAAAAATAGAAATGATAGGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * ** *
3330032 AAACAAC-ACGTCAAAAAATGAAAATGATAGGGATT
1 AAACCACGA-GTCAAAAAATAAAAATGACCGAGATT
* * * * * * * *
3330067 AAAGCACGAGTTAGAAAATGTAAAA-CAACGGGGTT
1 AAACCACGAGTCAAAAAAT-AAAAATGACCGAGATT
**** * * * * *
3330102 AAACTTTAATTCGAAAAGTGAAAATGA-AGAAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCG-AGATT
* * * ** *
3330137 AAACCATGAGTTAGAAAATGCAAATGACTG-GAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAG-ATT
** * * *
3330172 AAATGATGAGTCAAAAAATGAAAATGA-CAAGCATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAG-ATT
* * *
3330207 AAATCAAGAGTCAAAGAAATAAAAATGACC-AGAATC
1 AAACCACGAGTCAAA-AAATAAAAATGACCGAG-ATT
* * * * *
3330243 AAATCACTAGTTAGAAAATGAAAATGACC-AGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGA-GATT
** * * * * *
3330278 AAACTGCTAGTCAAGAAACAAAAACGA-CTAGAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAG-ATT
* * * * *
3330313 AAATCACGAGTTAGAAAATAAAAATGACCAAAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * * * * * *
3330348 AAATCATGAGCCTAAAATTGAAAATAATCGGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * *
3330383 AAACCATGTGTCAAAAAATTAAAATGA-CAAGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGA-GATT
* * * *
3330418 AAACCACGAGTCAGAGAATGAAAATGACCGAGATG
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * *
3330453 AAACCACCAGTCAAAAAATAAAAAATGATCGATATT
1 AAACCACGAGTCAAAAAAT-AAAAATGACCGAGATT
* * *
3330489 AAACCACGAGTCAGAAAAAGAAGACA--ACATG-GATT
1 AAACCACGAGTCA-AAAAATAA-AAATGAC-CGAGATT
* * * *
3330524 AAACCATGAGTCAGAGAAATTAAAATGACC-AGAATC
1 AAACCACGAGTCA-AAAAATAAAAATGACCGAG-ATT
* * ** *
3330560 AAAACATGAGTCAGCAAATAAAAACGACC-AGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGA-GATT
* * * ** * *
3330595 AAATCATGAGTCAAAAAACAAAAACAACTGGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * *
3330630 AAACAACGAGTTAGAAAATAAAAAATGACC-AGGATT
1 AAACCACGAGTCAAAAAAT-AAAAATGACCGA-GATT
* * * * *
3330666 AAATCACGAGTCAGAAAATGAAAAT-AACTACGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGA-GATT
* * * * * * *
3330701 AAACAATGGGTCAAAAAATGAAAA-CAACTAGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGA-GATT
* * * * * *
3330736 AAACCATGGGTTAGAAAATGAAAATGACTGAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * * * * * *
3330771 AAATCACAAGTTAGAAAATGAAAACGGCCAACATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * ** *
3330806 AAATCC-CAAG-CTAGAGAAATAAAAATGATTGAAATT
1 AAA-CCACGAGTC-A-AAAAATAAAAATGACCGAGATT
* * * *
3330842 AAATCAAGAGTCAAAAAATAAAAACGATCGAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * *
3330877 AAACCACAAGTTCAAAAACGAAAACAATAGTGAAAATTACCGAAATT
1 AAACCACGAG-T------C-AAAA-AATA---AAAATGACCGAGATT
** * * *
3330924 AAATTACTAGTCAAAAAATGAAAATGACC-AGGATC
1 AAACCACGAGTCAAAAAATAAAAATGACCGA-GATT
**** * *
3330959 AAAATGTGAGTTAAAAAAT-GAAATGACCG-GTATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAG-ATT
* * * * * *
3330993 GAAGCATGAGTCAAAAAATGAAAATGA-CTAGGACT
1 AAACCACGAGTCAAAAAATAAAAATGACCGA-GATT
* * * *
3331028 AAACC-CTGAGTGAGAAAATGAAAACT-A-CTAGGATT
1 AAACCAC-GAGTCAAAAAAT-AAAAATGACCGA-GATT
* * ** *
3331063 AAACCATGAGTCAAAAAATAAAAAAGATAGGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * * * **
3331098 AAACAATGCGTTAGAAAATGAAAATGATAG-GAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAG-ATT
* * ** *
3331133 AAAGCACGAGT-AAGAAAATGTAAAA-GAATGGGGATT
1 AAACCACGAGTCAA-AAAAT-AAAAATG-ACCGAGATT
* * * * *
3331169 AAACCACAAGTCAAAAAGTGAAAATAACCAAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * * * * * *
3331204 AAATCATGAATTAGAAAATGAAAATGATCAAAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * *
3331239 AAACAACGAGTTC-AAATATGAAAATGATC-AGCACT
1 AAACCACGAG-TCAAAAAATAAAAATGACCGAG-ATT
* ** *
3331274 AAATCACGAGTCAAAGAAATAAAAATGATAG-GAATC
1 AAACCACGAGTCAAA-AAATAAAAATGACCGAG-ATT
* *
3331310 AAATCACGAGTCAAAAAATGAAAAA-GATCGAGATT
1 AAACCACGAGTCAAAAAAT-AAAAATGACCGAGATT
* * ** ** * *
3331345 AAACCACTAGTCAAAAAATGAAAACAATTGAAACT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * *
3331380 AAATCACGAGTCAAAAAATAAAAATGACCAAAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * * ** * *
3331415 AAATCATGAGTCTAAAACTGAAAACAATCTAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * * *
3331450 AAACCATGAGTCAAAAAATTACAA-CAACAAGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGA-GATT
* * * * * * *
3331485 AAACCATGAGTTAGAGAATGAAAATAACCGAGATG
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * ** *
3331520 AAACCACCAGTCAAAAAATGAAAAACGATTGGGATT
1 AAACCACGAGTCAAAAAAT-AAAAATGACCGAGATT
* * * ** ** *
3331556 AAACCACTAGTCAGAAAACAAAAACAATGGGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * *
3331591 AAACCATGAGTAAGAAAAATAAAAATGACCAAAATT
1 AAACCACGAGTCA-AAAAATAAAAATGACCGAGATT
* * * * * * *
3331627 AAATCATGAGTTAGAAAATAAAAAAAGA-TGGGAATT
1 AAACCACGAGTCAAAAAAT-AAAAATGACCGAG-ATT
* * *
3331663 AAACCACAAGTCAAAAAATGAAAATGATCGAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * *
3331698 AAATCACAAGTCAAAAAATAGAAATGACCAAAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* *
3331733 AAACCACGAGTCAAAAAATAAAAATGGCCAAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * *
3331768 AAATCACAAGTCATAAAATGAAAATGATCGAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * * *
3331803 AAACCATGGGTTAGAAAATAAAAACGATC-AGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGA-GATT
* * * * *
3331838 -AACCATGGGTTAGAAAATGAAAATGACCGAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * *
3331872 AAATCATGAGCCAAAAAATGAAAATGATCG-GTATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAG-ATT
* * * * ** *
3331907 AAATCACAAGCCAATGAAATAAAAATGATTGAAATT
1 AAACCACGAGTCAA-AAAATAAAAATGACCGAGATT
* ** * * *
3331943 AAATCATTAGTGAGAAAATAAAAATGATCGAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * *
3331978 AAACCACAAATCAAAAAATGAAAATGATAATGAAAATTAACAAAATT
1 AAACCACGAGTCAAAAAAT---AA--A-AATG------ACCGAGATT
** * * * * * * *
3332025 AAATTACAAGTTAGAAAATGAAAATGACTGGGACT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * *
3332060 AAACC-CTAAGTGAGAAAATGAAAATCACC-AGGATT
1 AAACCAC-GAGTCAAAAAATAAAAATGACCGA-GATT
* * *
3332095 AAACCATGAGTCAGAAAATGAAAAATGATC-AGGATT
1 AAACCACGAGTCAAAAAAT-AAAAATGACCGA-GATT
* * **
3332131 ACACCACGAGTCAAAAAATAAAAACGA-TTAGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGA-GATT
* * * ** * *
3332166 AAATCATGAGT-TAAAAATAAAAGA-GATAGGGATA
1 AAACCACGAGTCAAAAAATAAAA-ATGACCGAGATT
* * ** * ** *
3332200 AAACAACGTG-CTGGAAAATGAAAACT-ATAGGGATT
1 AAACCACGAGTC-AAAAAAT-AAAAATGACCGAGATT
* * *
3332235 AAAGCATGAGTCAAAAAATGTAAAACTAT-A-AG-GATT
1 AAACCACGAGTCAAAAAA--TAAAA--ATGACCGAGATT
* * * **
3332271 GAACCACAAGTCAAAAAGA-GAAAATGATAGAGATT
1 AAACCACGAGTCAAAAA-ATAAAAATGACCGAGATT
* ** * *
3332306 AAACCATGAGTCAGCAAATAAAAATGATCGAAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * *
3332341 AAACGATGAGTCAAAAAATGAAAATGATCG-GCATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAG-ATT
* * * * *
3332376 AAATCACAAGTCAAAGAAATAAAAATGATCAAAATT
1 AAACCACGAGTCAAA-AAATAAAAATGACCGAGATT
* * * *
3332412 AAATCATGAGTCAAAAAATAAAAAATGACTGGGATT
1 AAACCACGAGTCAAAAAAT-AAAAATGACCGAGATT
* * * *
3332448 AAACCACTAGTCAAAAAATTAAAATGATCGAAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * * *
3332483 AAATCACAAGTCAGAAAATAAATATGACCAAAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * ** * * *
3332518 AAATCACGAGTC-TAAGGTAAAAATGATCAAAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * *
3332552 AAATCACGAGTCTAAAATTAAAAATGACCGAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * * * *
3332587 AATCCACGAGTTAGAAAATTAAAATGACAG-GAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAG-ATT
* * * * *
3332622 AAACCAAGAGTCAGAGAATAAAAACGATCGAGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* ** * **
3332657 AATCCATTAGTCAGAAAATGAAAAATGA-TTAGGATT
1 AAACCACGAGTCAAAAAAT-AAAAATGACCGA-GATT
* *
3332693 AAACCATGAGTCAAAAAATGATGAAA--A-CGAGGATT
1 AAACCACGAGTCAAAAAAT-A-AAAATGACCGA-GATT
* * * *
3332728 AAACCACAAGT-AAGAGAAACAAAAATGACCAAAATT
1 AAACCACGAGTCAA-A-AAATAAAAATGACCGAGATT
* * * * * *
3332764 AAATCACGAATCAGAAAATGAAAA-CAACGAGAATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAG-ATT
* * * * *
3332799 AAACTATGAGTCAAAAAATAAAAAAGATCGGGATT
1 AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
* * *
3332834 AAATCACAAGTCAGAGAAAATAAAAATGA-CTAGGATAT
1 AAACCACGAGTCA-A-AAAATAAAAATGACCGA-GAT-T
* *
3332872 AAACCACGAGTCAAAAAATAAAAACGACTTG-GATT
1 AAACCACGAGTCAAAAAATAAAAATGAC-CGAGATT
** *
3332907 AAATTACGAGTCAAAAAATGAAAATGA
1 AAACCACGAGTCAAAAAATAAAAATGA
3332934 TTGGGATTAA
Statistics
Matches: 2218, Mismatches: 641, Indels: 296
0.70 0.20 0.09
Matches are distributed among these distances:
32 2 0.00
33 2 0.00
34 165 0.07
35 1440 0.65
36 488 0.22
37 38 0.02
38 19 0.01
39 4 0.00
40 2 0.00
41 8 0.00
42 2 0.00
43 4 0.00
44 5 0.00
46 1 0.00
47 38 0.02
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (35 bp):
AAACCACGAGTCAAAAAATAAAAATGACCGAGATT
Found at i:3331847 original size:34 final size:35
Alignment explanation
Indices: 3331782--3331879 Score: 128
Period size: 34 Copynumber: 2.8 Consensus size: 35
3331772 CACAAGTCAT
*
3331782 AAAATGAAAATGATCGAGATTAAACCATGGGTTAG
1 AAAATGAAAACGATCGAGATTAAACCATGGGTTAG
*
3331817 AAAATAAAAACGATC-AGGATT-AACCATGGGTTAG
1 AAAATGAAAACGATCGA-GATTAAACCATGGGTTAG
* * *
3331851 AAAATGAAAATGACCGAGATTAAATCATG
1 AAAATGAAAACGATCGAGATTAAACCATG
3331880 AGCCAAAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
34 30 0.56
35 24 0.44
ACGTcount: A:0.48, C:0.10, G:0.20, T:0.21
Consensus pattern (35 bp):
AAAATGAAAACGATCGAGATTAAACCATGGGTTAG
Found at i:3331890 original size:139 final size:140
Alignment explanation
Indices: 3331719--3331979 Score: 312
Period size: 139 Copynumber: 1.9 Consensus size: 140
3331709 CAAAAAATAG
* * *
3331719 AAATGACCAAAATTAAACCACGAGTCAAAAAATAAAAATGGCCAAG-ATTAAATCACAAGTC-AT
1 AAATGACCAAAATTAAACCACGAGCCAAAAAATAAAAATGACC-AGTATTAAATCACAAGCCAAT
* * * *
3331782 AAAATGAAAATGATCGAGATTAAACCATGGGTTAGAAAATAAAAACGATC-AGGATTAACCATGG
65 AAAATAAAAATGATCGAAATTAAACCATGAGTGAGAAAATAAAAACGATCGA-GATTAACCATGG
3331846 GTTAGAAAATGA
129 GTTAGAAAATGA
* * * * * * * *
3331858 AAATGACCGAGATTAAATCATGAGCCAAAAAATGAAAATGATCGGTATTAAATCACAAGCCAATG
1 AAATGACCAAAATTAAACCACGAGCCAAAAAATAAAAATGACCAGTATTAAATCACAAGCCAATA
* * * *
3331923 AAATAAAAATGATTGAAATTAAATCATTAGTGAGAAAATAAAAATGATCGAGATTAA
66 AAATAAAAATGATCGAAATTAAACCATGAGTGAGAAAATAAAAACGATCGAGATTAA
3331980 ACCACAAATC
Statistics
Matches: 100, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
138 1 0.01
139 49 0.49
140 49 0.49
141 1 0.01
ACGTcount: A:0.51, C:0.11, G:0.16, T:0.21
Consensus pattern (140 bp):
AAATGACCAAAATTAAACCACGAGCCAAAAAATAAAAATGACCAGTATTAAATCACAAGCCAATA
AAATAAAAATGATCGAAATTAAACCATGAGTGAGAAAATAAAAACGATCGAGATTAACCATGGGT
TAGAAAATGA
Found at i:3332551 original size:69 final size:69
Alignment explanation
Indices: 3332279--3332895 Score: 342
Period size: 71 Copynumber: 8.7 Consensus size: 69
3332269 TTGAACCACA
* ** * * ** *
3332279 AGTCAAAAAGAGAAAATGATAGAGATTAAACCATGAGTCAGCAAATAAAAATGATCGAAATTAAA
1 AGTCAAAAATA-AAAATGACCGAGATTAAATCACGAGTCAAAAAATAAAAATGATCAAAATTAAA
*
3332344 -CGATG
65 TC-ACG
* * *
3332349 AGTCAAAAAATGAAAATGATCG-GCATTAAATCACAAGTCAAAGAAATAAAAATGATCAAAATTA
1 AGTC-AAAAATAAAAATGACCGAG-ATTAAATCACGAGTCAAA-AAATAAAAATGATCAAAATTA
*
3332413 AATCATG
63 AATCACG
* * * * * *
3332420 AGTCAAAAAATAAAAAATGACTGGGATTAAACCACTAGTCAAAAAATTAAAATGATCGAAATTAA
1 AGTC-AAAAAT-AAAAATGACCGAGATTAAATCACGAGTCAAAAAATAAAAATGATCAAAATTAA
*
3332485 ATCACA
64 ATCACG
* * * * **
3332491 AGTCAGAAAATAAATATGACCAAAATTAAATCACGAGTC-TAAGGTAAAAATGATCAAAATTAAA
1 AGTCA-AAAATAAAAATGACCGAGATTAAATCACGAGTCAAAAAATAAAAATGATCAAAATTAAA
3332555 TCACG
65 TCACG
* * * * *
3332560 AGTCTAAAATTAAAAATGACCGAGATT-AATCCACGAGTTAGAAAATTAAAATGA-CAGGAATTA
1 AGTC-AAAAATAAAAATGACCGAGATTAAAT-CACGAGTCAAAAAATAAAAATGATCA-AAATTA
* *
3332623 AACCAAG
63 AATCACG
* * * ** * * **
3332630 AGTCAGAGAATAAAAACGATCGAGATT-AATCCATTAGTCAGAAAATGAAAAATGATTAGGATTA
1 AGTCA-AAAATAAAAATGACCGAGATTAAAT-CACGAGTCAAAAAAT-AAAAATGATCAAAATTA
* *
3332694 AACCATG
63 AATCACG
* * * * *
3332701 AGTCAAAAAATGATGAAA--A-CGAGGATTAAACCACAAGT-AAGAGAAACAAAAATGACCAAAA
1 AGTC-AAAAAT-A-AAAATGACCGA-GATTAAATCACGAGTCAA-A-AAATAAAAATGATCAAAA
3332762 TTAAATCACG
60 TTAAATCACG
* * * * * * ***
3332772 AATCAGAAAATGAAAA-CAACGAGAATTAAA-CTATGAGTCAAAAAATAAAAAAGATCGGGATTA
1 AGTCA-AAAATAAAAATGACCGAG-ATTAAATC-ACGAGTCAAAAAATAAAAATGATCAAAATTA
*
3332835 AATCACA
63 AATCACG
* *
3332842 AGTCAGAGAAAATAAAAATGA-CTAGGATATAAACCACGAGTCAAAAAATAAAAA
1 AGTC--A-AAAATAAAAATGACCGA-GAT-TAAATCACGAGTCAAAAAATAAAAA
3332896 CGACTTGGAT
Statistics
Matches: 430, Mismatches: 84, Indels: 63
0.75 0.15 0.11
Matches are distributed among these distances:
68 3 0.01
69 59 0.14
70 138 0.32
71 151 0.35
72 50 0.12
73 28 0.07
74 1 0.00
ACGTcount: A:0.54, C:0.12, G:0.15, T:0.19
Consensus pattern (69 bp):
AGTCAAAAATAAAAATGACCGAGATTAAATCACGAGTCAAAAAATAAAAATGATCAAAATTAAAT
CACG
Found at i:3332568 original size:29 final size:30
Alignment explanation
Indices: 3332500--3332568 Score: 77
Period size: 34 Copynumber: 2.2 Consensus size: 30
3332490 AAGTCAGAAA
*
3332500 ATAAATATGACCAAAATTAAATCACGAGTC
1 ATAAAAATGACCAAAATTAAATCACGAGTC
*
3332530 TAAGGTAAAAATGATCAAAATTAAATCACGAGTC
1 --A--TAAAAATGACCAAAATTAAATCACGAGTC
3332564 -TAAAA
1 ATAAAA
3332569 TTAAAAATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
29 5 0.15
32 1 0.03
34 27 0.82
ACGTcount: A:0.52, C:0.13, G:0.12, T:0.23
Consensus pattern (30 bp):
ATAAAAATGACCAAAATTAAATCACGAGTC
Found at i:3332570 original size:19 final size:19
Alignment explanation
Indices: 3332512--3332573 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 19
3332502 AAATATGACC
3332512 AAAATTAAATCACGAGTCT
1 AAAATTAAATCACGAGTCT
** * *
3332531 -AAGGTAAA-AATGA-TC-
1 AAAATTAAATCACGAGTCT
3332546 AAAATTAAATCACGAGTCT
1 AAAATTAAATCACGAGTCT
3332565 AAAATTAAA
1 AAAATTAAA
3332574 AATGACCGAG
Statistics
Matches: 31, Mismatches: 8, Indels: 8
0.66 0.17 0.17
Matches are distributed among these distances:
16 8 0.26
17 6 0.19
18 8 0.26
19 9 0.29
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.24
Consensus pattern (19 bp):
AAAATTAAATCACGAGTCT
Found at i:3332896 original size:108 final size:106
Alignment explanation
Indices: 3332690--3332945 Score: 264
Period size: 108 Copynumber: 2.4 Consensus size: 106
3332680 AATGATTAGG
* **
3332690 ATTAAACCATGAGTCAAAAAATGATGAAA-A-CGAGGATTAAACCACAAGTAAGAGAAACAAAAA
1 ATTAAACTATGAGTCAAAAAAT-AAAAAAGATCG-GGATTAAACCACAAGTAAGAGAAACAAAAA
* * *
3332753 TGACCAAAATTAAATCACGAATCAGAAAATGAAAACAACGAGA
64 TGACCAAAATTAAACCACGAATCAAAAAATAAAAACAACGAGA
* * *
3332796 ATTAAACTATGAGTCAAAAAATAAAAAAGATCGGGATTAAATCACAAGTCAGAGAAAATAAAAAT
1 ATTAAACTATGAGTCAAAAAATAAAAAAGATCGGGATTAAACCACAAGTAAGAG-AAACAAAAAT
* ** * * ** *
3332861 GACTAGGATATAAACCACGAGTCAAAAAATAAAAACGACTTGG
65 GACCAAAAT-TAAACCACGAATCAAAAAATAAAAACAACGAGA
* * * * *
3332904 ATTAAATTACGAGTCAAAAAATGAAAATGATTGGGATTAAAC
1 ATTAAACTATGAGTCAAAAAATAAAAAAGATCGGGATTAAAC
3332946 TATGGGTCAG
Statistics
Matches: 123, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
105 4 0.03
106 41 0.33
107 17 0.14
108 61 0.50
ACGTcount: A:0.54, C:0.12, G:0.16, T:0.18
Consensus pattern (106 bp):
ATTAAACTATGAGTCAAAAAATAAAAAAGATCGGGATTAAACCACAAGTAAGAGAAACAAAAATG
ACCAAAATTAAACCACGAATCAAAAAATAAAAACAACGAGA
Found at i:3332960 original size:35 final size:35
Alignment explanation
Indices: 3332037--3333141 Score: 197
Period size: 35 Copynumber: 31.3 Consensus size: 35
3332027 ATTACAAGTT
* * * * *
3332037 AGAAAATGAAAATGACTGGGACTAAACC-CTAAGTG
1 AGAAAATGAAAACGATTGGGATTAAACCAC-GAGTC
*** *
3332072 AGAAAATGAAAATC-ACCAGGATTAAACCATGAGTC
1 AGAAAATGAAAA-CGATTGGGATTAAACCACGAGTC
* ** *
3332107 AGAAAATGAAAAATGATCAGGATTACACCACGAGTC
1 AGAAAATG-AAAACGATTGGGATTAAACCACGAGTC
* * * * * *
3332143 AAAAAATAAAAACGATTAGGATTAAATCATGAGTT
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * * * *
3332178 A-AAAAT-AAAAGAGATAGGGATAAAACAACGTG-C
1 AGAAAATGAAAA-CGATTGGGATTAAACCACGAGTC
* * * * *
3332211 TGGAAAATGAAAACTATAGGGATTAAAGCATGAGTC
1 -AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * ** * *
3332247 AAAAAATGTAAAACTATAAGGATTGAACCACAAGTC
1 AGAAAATG-AAAACGATTGGGATTAAACCACGAGTC
* * * * *
3332283 A-AAAAGAGAAAATGATAGAGATTAAACCATGAGTC
1 AGAAAA-TGAAAACGATTGGGATTAAACCACGAGTC
* * * * ** * *
3332318 AGCAAATAAAAATGATCGAAATTAAACGATGAGTC
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * * * * *
3332353 AAAAAATGAAAATGATCGGCATTAAATCACAAGTC
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * * **** * *
3332388 AAAGAAATAAAAATGATCAAAATTAAATCATGAGTC
1 AGA-AAATGAAAACGATTGGGATTAAACCACGAGTC
* * * * *
3332424 AAAAAATAAAAAATGACTGGGATTAAACCACTAGTC
1 AGAAAAT-GAAAACGATTGGGATTAAACCACGAGTC
* * * * ** * *
3332460 AAAAAATTAAAATGATCGAAATTAAATCACAAGTC
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* ***** *
3332495 AGAAAAT-AAATATGACCAAAATTAAATCACGAGTC
1 AGAAAATGAAA-ACGATTGGGATTAAACCACGAGTC
* ** * * **** *
3332530 -TAAGGTAAAAATGATCAAAATTAAATCACGAGTC
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * * ** * * *
3332564 TA-AAATTAAAAATGACCGAGATTAATCCACGAGTT
1 -AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * ** * *
3332599 AGAAAATTAAAATGACAGGAATTAAACCAAGAGTC
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * * * * **
3332634 AGAGAATAAAAACGATCGAGATTAATCCATTAGTC
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * *
3332669 AGAAAATGAAAAATGATTAGGATTAAACCATGAGTC
1 AGAAAATG-AAAACGATTGGGATTAAACCACGAGTC
* * *
3332705 AAAAAATGATGAAAACGA---GGATTAAACCACAAGTA
1 -AGAAA--ATGAAAACGATTGGGATTAAACCACGAGTC
** * ***** * *
3332740 AGAGAAACAAAAATGACCAAAATTAAATCACGAATC
1 AGA-AAATGAAAACGATTGGGATTAAACCACGAGTC
** * * *
3332776 AGAAAATGAAAAC-AACGAGAATTAAACTATGAGTC
1 AGAAAATGAAAACGATTG-GGATTAAACCACGAGTC
* * * * * *
3332811 AAAAAATAAAAAAGATCGGGATTAAATCACAAGTC
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * * *
3332846 AGAGAAAATAAAAATGACTAGGATATAAACCACGAGTC
1 --AGAAAATGAAAACGATTGGGAT-TAAACCACGAGTC
* * **
3332884 AAAAAATAAAAACGACTT-GGATTAAATTACGAGTC
1 AGAAAATGAAAACGA-TTGGGATTAAACCACGAGTC
* * * * *
3332919 AAAAAATGAAAATGATTGGGATTAAACTATGGGTC
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * * * * *
3332954 AGAAAATGAATACGATAGAGATTAAACCATGGGTT
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * ** * ** *
3332989 AGAGAATGAAAACAACCGAGATTAAATTATGAGTC
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * ** * * **
3333024 TGAAAATGAAATCGATCAGTATTAAATCATAAG-C
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
* * **** * * *
3333058 TAGAGAAATAAAAATGATCAAAATTCAATCACAAGTC
1 -AGA-AAATGAAAACGATTGGGATTAAACCACGAGTC
* * *
3333095 AGAAAATGAAAATGATTGAGATTAAAACACGAGTC
1 AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
*
3333130 AGAAAAGGAAAA
1 AGAAAATGAAAA
3333142 TGATAATAAA
Statistics
Matches: 811, Mismatches: 222, Indels: 74
0.73 0.20 0.07
Matches are distributed among these distances:
33 11 0.01
34 55 0.07
35 505 0.62
36 197 0.24
37 23 0.03
38 17 0.02
39 3 0.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.20
Consensus pattern (35 bp):
AGAAAATGAAAACGATTGGGATTAAACCACGAGTC
Found at i:3333390 original size:35 final size:35
Alignment explanation
Indices: 3333292--3333460 Score: 121
Period size: 35 Copynumber: 4.8 Consensus size: 35
3333282 GAGAAAATGA
** *
3333292 AAACCACCAA-TCAAAAAATGAAAACAATCGAGATT
1 AAACCA-CAAGTCAAAAAATGAAAATGATCAAGATT
** **
3333327 AAATGATGAGTCAAAAAATGAAAAATGATCAAGATT
1 AAACCACAAGTCAAAAAATG-AAAATGATCAAGATT
* * *
3333363 ATACCACAAGTCAAAAAATGAATATGAT-AGGAATT
1 AAACCACAAGTCAAAAAATGAAAATGATCAAG-ATT
* * *
3333398 AAATCATAAGTTAAAAAAT-AGAAATGA-CAATGATT
1 AAACCACAAGTCAAAAAATGA-AAATGATCAA-GATT
* **
3333433 AAACAACGTGTCAAAAAATGAAAATGAT
1 AAACCACAAGTCAAAAAATGAAAATGAT
3333461 AGGGATTAAA
Statistics
Matches: 100, Mismatches: 26, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
34 4 0.04
35 67 0.67
36 29 0.29
ACGTcount: A:0.56, C:0.11, G:0.13, T:0.21
Consensus pattern (35 bp):
AAACCACAAGTCAAAAAATGAAAATGATCAAGATT
Found at i:3333423 original size:70 final size:71
Alignment explanation
Indices: 3333302--3333562 Score: 215
Period size: 71 Copynumber: 3.7 Consensus size: 71
3333292 AAACCACCAA
** * * * *
3333302 TCAAAAAATGAAAACAAT-CGAGATTAAATGATGAGTCAAAAAATGAAAAATGATCAA-GATTAT
1 TCAAAAAATGAAAATGATAGGA-ATTAAATCATGAGTTAAAAAATGAAAAATGA-CAATGATTAA
*
3333365 ACCACAAG
64 ACAACAAG
* * *
3333373 TCAAAAAATGAATATGATAGGAATTAAATCATAAGTTAAAAAAT-AGAAATGACAATGATTAAAC
1 TCAAAAAATGAAAATGATAGGAATTAAATCATGAGTTAAAAAATGAAAAATGACAATGATTAAAC
**
3333437 AACGTG
66 AACAAG
* * * * ** **
3333443 TCAAAAAATGAAAATGATAGGGATTAAAACATGAGTTAGAAAATGTAAAACAACAGGGATTAAAC
1 TCAAAAAATGAAAATGATAGGAATTAAATCATGAGTTAAAAAATGAAAAATGACAATGATTAAAC
* *
3333508 TATAAG
66 AACAAG
** * * * *
3333514 TTGAAAAGTGAAAATGA-AGAAGATTAAACCATGAGTTAGAAAATGAAAA
1 TCAAAAAATGAAAATGATAGGA-ATTAAATCATGAGTTAAAAAATGAAAA
3333563 CGACTAGAAT
Statistics
Matches: 152, Mismatches: 34, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
69 3 0.02
70 58 0.38
71 89 0.59
72 2 0.01
ACGTcount: A:0.54, C:0.08, G:0.16, T:0.21
Consensus pattern (71 bp):
TCAAAAAATGAAAATGATAGGAATTAAATCATGAGTTAAAAAATGAAAAATGACAATGATTAAAC
AACAAG
Found at i:3333486 original size:35 final size:35
Alignment explanation
Indices: 3333377--3334264 Score: 310
Period size: 35 Copynumber: 25.3 Consensus size: 35
3333367 CACAAGTCAA
* * * * *
3333377 AAAATGAATATGATAGGAATTAAATCATAAGTTAA
1 AAAATGAAAATGATAGGGATTAAACCATGAGTTAG
* ** * * * * *
3333412 AAAAT-AGAAATGACAATGATTAAACAACGTGTCAA
1 AAAATGA-AAATGATAGGGATTAAACCATGAGTTAG
*
3333447 AAAATGAAAATGATAGGGATTAAAACATGAGTTAG
1 AAAATGAAAATGATAGGGATTAAACCATGAGTTAG
** * * *
3333482 AAAATGTAAAACAACAGGGATTAAACTATAAGTT-G
1 AAAATG-AAAATGATAGGGATTAAACCATGAGTTAG
*
3333517 AAAAGTGAAAATGA-AGAAGATTAAACCATGAGTTAG
1 AAAA-TGAAAATGATAG-GGATTAAACCATGAGTTAG
* * ** *
3333553 AAAATGAAAACGACTA-GAATTAAATGATGAG-TCG
1 AAAATGAAAATGA-TAGGGATTAAACCATGAGTTAG
** ** * * *
3333587 AACAATGAAAATGACCGACATTAAATCATGAGTCAA
1 AA-AATGAAAATGATAGGGATTAAACCATGAGTTAG
* ** * * *
3333623 AGAAATAAAAACAACTA-GAATCAAATCATGAGTTAG
1 A-AAATGAAAATGA-TAGGGATTAAACCATGAGTTAG
* *
3333659 AAAATAAAAATGATCA-GGATTAAACTACT-AGTCTAG
1 AAAATGAAAATGAT-AGGGATTAAACCA-TGAGT-TAG
* * *
3333695 AAACA--AAAATGACT-GGAATTAAATCACGAGTTAG
1 AAA-ATGAAAATGA-TAGGGATTAAACCATGAGTTAG
* * ** * *
3333729 AAAATAAAAATGATCGAAATTAAATCATGAGCCTA-
1 AAAATGAAAATGATAGGGATTAAACCATGAG-TTAG
* * * *
3333764 AAATTGAAAACGACCA-GGATTAAACCATGAGCCTA-
1 AAAATGAAAATGA-TAGGGATTAAACCATGAG-TTAG
* * * ** *
3333799 AAAATTAAAACGACAAAGATTAAACCATGAGTCAG
1 AAAATGAAAATGATAGGGATTAAACCATGAGTTAG
* ** * ** * *
3333834 AGAATGAAAATGACCGAGATT-AACCACCAGTCAA
1 AAAATGAAAATGATAGGGATTAAACCATGAGTTAG
*
3333868 AAAATGAAAAATGATCGGGATTAAACCATGAGTTAG
1 AAAATG-AAAATGATAGGGATTAAACCATGAGTTAG
* * ** * * *
3333904 ACAATGAAGACAACAAGGATTAAACCATGAGTCAG
1 AAAATGAAAATGATAGGGATTAAACCATGAGTTAG
* * * * * * *
3333939 AGAAATAAAAATTACCA-GAATCAAAACATGAGTCAG
1 A-AAATGAAAATGA-TAGGGATTAAACCATGAGTTAG
** * *
3333975 AAAATGAAAATGACCGAGATTAAATCATGA-TTCAG
1 AAAATGAAAATGATAGGGATTAAACCATGAGTT-AG
* ** ** ** *
3334010 AAAATAAAAACAACCGGGATTAAATAATGAGTCA-
1 AAAATGAAAATGATAGGGATTAAACCATGAGTTAG
*
3334044 AAAATGAAAATGACTA-GGATTAAACCATGGGTTAG
1 AAAATGAAAATGA-TAGGGATTAAACCATGAGTTAG
* ** *
3334079 ACAATGAAAACAACTA-GGATTAAACCATGGGTTAG
1 AAAATGAAAATGA-TAGGGATTAAACCATGAGTTAG
* * * *
3334114 AAAATGAAAACGACT-GAGATTAAATCACGAGTTAG
1 AAAATGAAAATGA-TAGGGATTAAACCATGAGTTAG
* ** ** * *
3334149 AAAATGAAAATGGTCA-ACATTAAACCACAAGCTAA
1 AAAATGAAAATGAT-AGGGATTAAACCATGAGTTAG
* * ** * *
3334184 AGAAATCAAAATGATTGAAATTAAATCAAGAGTTAG
1 A-AAATGAAAATGATAGGGATTAAACCATGAGTTAG
* * *
3334220 AAAATGAAAATGATCGAGATTAAACCACGAGTTCA-
1 AAAATGAAAATGATAGGGATTAAACCATGAGTT-AG
3334255 AAAATGAAAA
1 AAAATGAAAA
3334265 CAATAATGAA
Statistics
Matches: 645, Mismatches: 166, Indels: 84
0.72 0.19 0.09
Matches are distributed among these distances:
33 1 0.00
34 60 0.09
35 451 0.70
36 128 0.20
37 5 0.01
ACGTcount: A:0.51, C:0.11, G:0.17, T:0.20
Consensus pattern (35 bp):
AAAATGAAAATGATAGGGATTAAACCATGAGTTAG
Found at i:3334320 original size:47 final size:46
Alignment explanation
Indices: 3334218--3334320 Score: 118
Period size: 47 Copynumber: 2.2 Consensus size: 46
3334208 ATCAAGAGTT
*
3334218 AGAAAATGAAAATGATCGAGATTAAACCACGAGTTCAAAAATGAAA
1 AGAAAATGAAAATGATCGAAATTAAACCACGAGTTCAAAAATGAAA
* * ** *
3334264 ACAATAATGAAAATTATCGAAATTAAATTACTAG-TCAAAAAATGAAA
1 AGAA-AATGAAAATGATCGAAATTAAACCACGAGTTC-AAAAATGAAA
3334311 ATGAAAATGA
1 A-GAAAATGA
3334321 CCAGGATCAA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
46 5 0.11
47 40 0.85
48 2 0.04
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (46 bp):
AGAAAATGAAAATGATCGAAATTAAACCACGAGTTCAAAAATGAAA
Found at i:3334574 original size:69 final size:69
Alignment explanation
Indices: 3334482--3334804 Score: 221
Period size: 69 Copynumber: 4.7 Consensus size: 69
3334472 TCATAAGTCA
** * *
3334482 AAAAATGAAAATGACCGAGATTAAATCATGAGTCAAAAAATAAAAATGATGGGGATTAAACAATA
1 AAAAATGAAAATGATAGAGATTAAATCACGAGTCAAAAAATAAAAATGATGGGGATTAAACAAAA
3334547 TGTC
66 TGTC
* * *
3334551 AAAAATGAAAATGATAG-GAATTAAAGCACGAGT-AAGAAAATGTAAAATAATGGGGATTAAACC
1 AAAAATGAAAATGATAGAG-ATTAAATCACGAGTCAA-AAAAT-AAAAATGATGGGGATTAAA-C
*
3334614 ACAA-GTC
62 AAAATGTC
* * ** * * * ***
3334621 AAAAAGTGAAAATGACAGAGATTAAAACGTGAGTCAGAAAGTGAAAATGAT-CAAATTAAACAAC
1 AAAAA-TGAAAATGATAGAGATTAAATCACGAGTCAAAAAATAAAAATGATGGGGATTAAACAA-
3334685 AAT-TC
64 AATGTC
* * *** * *
3334690 AAAAA-AAAAATGATCAG-CATTAAATCACGAGTCAAATAAATAAAAATGACCAGAATCAAATCA
1 AAAAATGAAAATGAT-AGAGATTAAATCACGAGTCAAA-AAATAAAAATGATGGGGATTAAA-CA
**
3334753 TGA-GTC
63 AAATGTC
* * * * *
3334759 AAAAATGAAAAAGATTGAGATTAAACCACTAGTCAAAAAATGAAAA
1 AAAAATGAAAATGATAGAGATTAAATCACGAGTCAAAAAATAAAAA
3334805 CAACCGAAAC
Statistics
Matches: 196, Mismatches: 42, Indels: 32
0.73 0.16 0.12
Matches are distributed among these distances:
67 21 0.11
68 17 0.09
69 70 0.36
70 57 0.29
71 29 0.15
72 2 0.01
ACGTcount: A:0.54, C:0.10, G:0.16, T:0.19
Consensus pattern (69 bp):
AAAAATGAAAATGATAGAGATTAAATCACGAGTCAAAAAATAAAAATGATGGGGATTAAACAAAA
TGTC
Found at i:3335361 original size:35 final size:35
Alignment explanation
Indices: 3334343--3335367 Score: 432
Period size: 35 Copynumber: 29.3 Consensus size: 35
3334333 TGCGAGCAAA
* * * *
3334343 AAAAT-AAAAGCGATCGATATTAAAGCACGAGTCAA
1 AAAATGAAAA-CGATCGAGATTAAACCATGAGTCAG
* * * * *
3334378 AAAATGAAAAAGACTGGA-ACTAAACCCTGAGTGAG
1 AAAATGAAAACGA-TCGAGATTAAACCATGAGTCAG
* * * ** *
3334413 AAAATGAAAACCA-CTAGGATTAAACCACGAAACAA
1 AAAATGAAAACGATCGA-GATTAAACCATGAGTCAG
* * * * * * *
3334448 AAAATAAAAATGAACTGA-ATTACATCATAAGTCAA
1 AAAATGAAAACGATC-GAGATTAAACCATGAGTCAG
* * * *
3334483 AAAATGAAAATGACCGAGATTAAATCATGAGTCAA
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * * * *
3334518 AAAATAAAAATGATGGGGATTAAACAAT-ATGTCA-
1 AAAATGAAAACGATCGAGATTAAACCATGA-GTCAG
* * * * *
3334552 AAAATGAAAATGATAG-GAATTAAAGCACGAGTAAG
1 AAAATGAAAACGATCGAG-ATTAAACCATGAGTCAG
** * * **
3334587 AAAATGTAAAATAATGGGGATTAAACCACAAGTCA-
1 AAAATG-AAAACGATCGAGATTAAACCATGAGTCAG
* * *
3334622 AAAAGTGAAAATGA-CAGAGATTAAAACGTGAGTCAG
1 AAAA-TGAAAACGATC-GAGATTAAACCATGAGTCAG
* * * * ** *
3334658 AAAGTGAAAATGATC-AAATTAAACAACAATTCA-
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * * * *
3334691 AAAA-AAAAATGATC-AGCATTAAATCACGAGTCAA
1 AAAATGAAAACGATCGAG-ATTAAACCATGAGTCAG
* * * * *
3334725 ATAAATAAAAATGA-CCAGAATCAAATCATGAGTCA-
1 A-AAATGAAAACGATCGAG-ATTAAACCATGAGTCAG
* * *
3334760 AAAATGAAAAAGATTGAGATTAAACCACT-AGTCAA
1 AAAATGAAAACGATCGAGATTAAACCA-TGAGTCAG
* * * * * *
3334795 AAAATGAAAACAACCGAAACTAAATCATGACTCAG
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * * * * * *
3334830 AAAATGAAAATGACCAAAATTAAATCATAAGTC-T
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
3334864 AAAATCGAAAAACGATCGAGATTAAACCATGAGTCAG
1 AAAAT-G-AAAACGATCGAGATTAAACCATGAGTCAG
* * * *
3334901 AAAATTACAAA--AACAGGGATTAAACCATGAGTTAG
1 AAAATGA-AAACGATC-GAGATTAAACCATGAGTCAG
* ** * * *
3334936 AGAATGAAATTGACCGAGATAAAACCACT-AGTCAA
1 AAAATGAAAACGATCGAGATTAAACCA-TGAGTCAG
* *
3334971 AAAATGAAAAACGATCGGGATTAAACCACT-AGTCAA
1 AAAATG-AAAACGATCGAGATTAAACCA-TGAGTCAG
* * *
3335007 AAAATGAAGA-GAAT-AAGGATTAAACCATGAGTCAAA
1 AAAATGAAAACG-ATCGA-GATTAAACCATGAGTC-AG
* * * * * *
3335043 AAAATAAAAATGACCAAAATTAAATCATGAGTCAG
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * * *
3335078 AAAATAAAAAAGAT-GGGAATTAAACCACGAGTCAG
1 AAAATGAAAACGATCGAG-ATTAAACCATGAGTCAG
* * *
3335113 AAAATGAAAACGATCGAGATTAAATCACGAGTCAA
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * * * *
3335148 AAAAT-AGAAATGATTGAAATTAAACCACGAGTCAA
1 AAAATGA-AAACGATCGAGATTAAACCATGAGTCAG
* * * * ** *
3335183 AAAATAAAAATGA-CCAGGATTAAATCACAAGTCAT
1 AAAATGAAAACGATCGA-GATTAAACCATGAGTCAG
* * * *
3335218 AAAATGAAAATGATCGGGATTAAACCATGGGTTAG
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* * *
3335253 AAAATGAAAAGGATC-AGGATT-AACCATGGGTTAG
1 AAAATGAAAACGATCGA-GATTAAACCATGAGTCAG
* * * *
3335287 AAAATGAAAATGACCGAGATTAAATCATGAGTCAA
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
* *
3335322 AAAATGAAAACGATCGAGATTAAACCTTGAATCAG
1 AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
3335357 AAAATGAAAAC
1 AAAATGAAAAC
3335368 AATAATGAAA
Statistics
Matches: 764, Mismatches: 176, Indels: 100
0.73 0.17 0.10
Matches are distributed among these distances:
32 10 0.01
33 17 0.02
34 105 0.14
35 477 0.62
36 145 0.19
37 10 0.01
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (35 bp):
AAAATGAAAACGATCGAGATTAAACCATGAGTCAG
Found at i:3335531 original size:70 final size:70
Alignment explanation
Indices: 3335397--3335532 Score: 168
Period size: 70 Copynumber: 1.9 Consensus size: 70
3335387 ATTAAATTAT
* * * *
3335397 GAGTTAGAAAGTGAAAATGACAAGGATTAAAACGCCTGTTGAAAAATGAAAACAACTAGAATTAA
1 GAGTTAGAAAATGAAAATGACAAGGACTAAAACGCCTGGTGAAAAATGAAAACAACAAGAATTAA
3335462 AGCAC
66 AGCAC
** * *
3335467 GAGTTAGAAAATGAAAATGACTGGGACT-AAAC-CCTGAGTGAGAAAATGAAAACCACAAGGATT
1 GAGTTAGAAAATGAAAATGACAAGGACTAAAACGCCTG-GTGA-AAAATGAAAACAACAAGAATT
3335530 AAA
64 AAA
3335533 CCGTGAGTCA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
68 4 0.07
69 7 0.12
70 45 0.80
ACGTcount: A:0.49, C:0.12, G:0.21, T:0.18
Consensus pattern (70 bp):
GAGTTAGAAAATGAAAATGACAAGGACTAAAACGCCTGGTGAAAAATGAAAACAACAAGAATTAA
AGCAC
Found at i:3335533 original size:35 final size:35
Alignment explanation
Indices: 3335396--3335552 Score: 113
Period size: 35 Copynumber: 4.5 Consensus size: 35
3335386 AATTAAATTA
* * *
3335396 TGAGTTAGAAAGTGAAAATGACAAGGATTAAAACGCC
1 TGAGTGAGAAAATGAAAACGACAAGGATT-AAAC-CC
* * * * *
3335433 TG-TTGA-AAAATGAAAACAACTAGAATTAAAGCAC
1 TGAGTGAGAAAATGAAAACGACAAGGATTAAA-CCC
* * ** *
3335467 -GAGTTAGAAAATGAAAATGACTGGGACTAAACCC
1 TGAGTGAGAAAATGAAAACGACAAGGATTAAACCC
* *
3335501 TGAGTGAGAAAATGAAAACCACAAGGATTAAACCG
1 TGAGTGAGAAAATGAAAACGACAAGGATTAAACCC
* *
3335536 TGAGTCAAAAAATGAAA
1 TGAGTGAGAAAATGAAA
3335553 GCAATTGGGA
Statistics
Matches: 91, Mismatches: 25, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
33 1 0.01
34 8 0.09
35 78 0.86
36 2 0.02
37 2 0.02
ACGTcount: A:0.49, C:0.12, G:0.21, T:0.18
Consensus pattern (35 bp):
TGAGTGAGAAAATGAAAACGACAAGGATTAAACCC
Found at i:3335827 original size:71 final size:71
Alignment explanation
Indices: 3335751--3335899 Score: 169
Period size: 72 Copynumber: 2.1 Consensus size: 71
3335741 AACGATGGGT
* *
3335751 AAAAAATTG-AAAATGATTGGCATTAAATCACGAGTCAAAGAAA-TATAAATGACCTG-AATTAA
1 AAAAAA-TGAAAAATGACTGGCATTAAACCACGAGTCAAA-AAATTA-AAATGACC-GAAATTAA
*
3335813 ATCACATGTC
62 ATCACAAGTC
* * * *
3335823 AAAAAATGAAAAATGACTGGGATTGAACCACTAGTCAAAAAATTAAAATGATCGAAATTAAATCA
1 AAAAAATGAAAAATGACTGGCATTAAACCACGAGTCAAAAAATTAAAATGACCGAAATTAAATCA
*
3335888 CAAGTT
66 CAAGTC
3335894 AAAAAA
1 AAAAAA
3335900 AATGAACAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
70 1 0.02
71 32 0.48
72 33 0.50
ACGTcount: A:0.52, C:0.11, G:0.13, T:0.23
Consensus pattern (71 bp):
AAAAAATGAAAAATGACTGGCATTAAACCACGAGTCAAAAAATTAAAATGACCGAAATTAAATCA
CAAGTC
Found at i:3335871 original size:35 final size:34
Alignment explanation
Indices: 3335751--3335899 Score: 115
Period size: 36 Copynumber: 4.2 Consensus size: 34
3335741 AACGATGGGT
* *
3335751 AAAAAATTGAAAATGATTGGCATTAAATCACGAGTC
1 AAAAAATT-AAAATGACTGGAATTAAATCAC-AGTC
3335787 AAAGAAA-TATAAATGACCT-GAATTAAATCACATGTC
1 AAA-AAATTA-AAATGA-CTGGAATTAAATCACA-GTC
* * * *
3335823 AAAAAATGAAAAATGACTGGGATTGAACCACTAGTC
1 AAAAAAT-TAAAATGACTGGAATTAAATCAC-AGTC
* *
3335859 AAAAAATTAAAATGA-TCGAAATTAAATCACAAGTT
1 AAAAAATTAAAATGACT-GGAATTAAATCAC-AGTC
3335894 AAAAAA
1 AAAAAA
3335900 AATGAACAAA
Statistics
Matches: 91, Mismatches: 13, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
34 1 0.01
35 32 0.35
36 52 0.57
37 6 0.07
ACGTcount: A:0.52, C:0.11, G:0.13, T:0.23
Consensus pattern (34 bp):
AAAAAATTAAAATGACTGGAATTAAATCACAGTC
Found at i:3335899 original size:72 final size:72
Alignment explanation
Indices: 3335749--3335905 Score: 169
Period size: 71 Copynumber: 2.2 Consensus size: 72
3335739 TAAACGATGG
* * *
3335749 GTAAAAAATTG-AAAATGATTGGCATTAAATCACGAGTCAAAGAAATATAAATGACCTGAATTAA
1 GTAAAAAAATGAAAAATGACTGGCATTAAACCACGAGTCAAAGAAATATAAATGACCTGAATTAA
*
3335813 ATCACAT
66 ATCACAA
* * * * *
3335820 GTCAAAAAATGAAAAATGACTGGGATTGAACCACTAGTCAAA-AAAT-TAAAATGATC-GAAATT
1 GTAAAAAAATGAAAAATGACTGGCATTAAACCACGAGTCAAAGAAATAT-AAATGACCTG-AATT
3335882 AAATCACAA
64 AAATCACAA
3335891 GTTAAAAAAAATGAA
1 G-T-AAAAAAATGAA
3335906 CAAAATTAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
70 2 0.03
71 33 0.46
72 26 0.37
73 10 0.14
ACGTcount: A:0.52, C:0.11, G:0.14, T:0.23
Consensus pattern (72 bp):
GTAAAAAAATGAAAAATGACTGGCATTAAACCACGAGTCAAAGAAATATAAATGACCTGAATTAA
ATCACAA
Found at i:3335912 original size:31 final size:33
Alignment explanation
Indices: 3335861--3335934 Score: 98
Period size: 31 Copynumber: 2.3 Consensus size: 33
3335851 CACTAGTCAA
* *
3335861 AAAATTAAAATGATCGAAATTAAATCACAAGT-T
1 AAAA-TAAAATGAACAAAATTAAATCACAAGTCT
*
3335894 AAAA-AAAATGAACAAAATTAAATCACGAGTCT
1 AAAATAAAATGAACAAAATTAAATCACAAGTCT
3335926 AAAATAAAA
1 AAAATAAAA
3335935 AACGACCGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 23 0.64
32 5 0.14
33 8 0.22
ACGTcount: A:0.61, C:0.09, G:0.08, T:0.22
Consensus pattern (33 bp):
AAAATAAAATGAACAAAATTAAATCACAAGTCT
Found at i:3335972 original size:35 final size:35
Alignment explanation
Indices: 3335933--3336114 Score: 106
Period size: 35 Copynumber: 5.1 Consensus size: 35
3335923 TCTAAAATAA
* *
3335933 AAAACGACCGAGATTAATCCATGAGTTAGAAAATT
1 AAAACGACCGAGATTAATCCATGAGTCAGAAAATG
** * *
3335968 AAAACGA-TAAGAATTAAACCATGAGTCAGAGAATG
1 AAAACGACCGAG-ATTAATCCATGAGTCAGAAAATG
* **
3336003 AAAATGACCGAGAAGAATCCACT-AGTCAGAAAATG
1 AAAACGACCGAGATTAATCCA-TGAGTCAGAAAATG
* ** * *
3336038 AAAAATGATTG-GAATTAA-ACATGAGTCAGAAAAAAAAG
1 -AAAACGACCGAG-ATTAATCCATGAGTCAG---AAAATG
*
3336076 AAAACGACCTG-GATTAAAT-CACGAGTCAGAAAATG
1 AAAACGACC-GAGATT-AATCCATGAGTCAGAAAATG
3336111 AAAA
1 AAAA
3336115 ATGATTGGCG
Statistics
Matches: 111, Mismatches: 24, Indels: 24
0.70 0.15 0.15
Matches are distributed among these distances:
34 3 0.03
35 67 0.60
36 14 0.13
37 9 0.08
38 18 0.16
ACGTcount: A:0.51, C:0.13, G:0.19, T:0.18
Consensus pattern (35 bp):
AAAACGACCGAGATTAATCCATGAGTCAGAAAATG
Found at i:3336012 original size:70 final size:70
Alignment explanation
Indices: 3335933--3336067 Score: 166
Period size: 70 Copynumber: 1.9 Consensus size: 70
3335923 TCTAAAATAA
** * *
3335933 AAAACGACCGAGATTAATCCA-TGAGTTAGAAAAT-TAAAACGATAAGAATTAAACCATGAGTCA
1 AAAACGACCGAGAAGAATCCACT-AGTCAGAAAATGAAAAACGATAAGAATTAAA-CATGAGTCA
3335996 GAGAATG
64 GAGAATG
* * **
3336003 AAAATGACCGAGAAGAATCCACTAGTCAGAAAATGAAAAATGATTGGAATTAAACATGAGTCAGA
1 AAAACGACCGAGAAGAATCCACTAGTCAGAAAATGAAAAACGATAAGAATTAAACATGAGTCAGA
3336068 AAAAAAAGAA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
70 39 0.71
71 16 0.29
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (70 bp):
AAAACGACCGAGAAGAATCCACTAGTCAGAAAATGAAAAACGATAAGAATTAAACATGAGTCAGA
GAATG
Found at i:3336128 original size:37 final size:35
Alignment explanation
Indices: 3336026--3336151 Score: 112
Period size: 37 Copynumber: 3.4 Consensus size: 35
3336016 AGAATCCACT
* *
3336026 AGTCAGAAAATGAAAAATGATTGGAATTAAACATG
1 AGTCAGAAAATGAAAAATGATTGGGATTAAACACG
** * *
3336061 AGTCAGAAAAAAAAGAAAACGACCT-GGATTAAATCACG
1 AGTCAG-AAAATGA-AAAATGA-TTGGGATTAAA-CACG
3336099 AGTCAGAAAATGAAAAATGATTGGCGATTAAACTACTG
1 AGTCAGAAAATGAAAAATGATTGG-GATTAAAC-AC-G
3336137 -GTCAAGAAAATGAAA
1 AGTC-AGAAAATGAAA
3336152 TGACTAGAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
35 7 0.10
36 13 0.18
37 30 0.42
38 22 0.31
ACGTcount: A:0.51, C:0.10, G:0.20, T:0.19
Consensus pattern (35 bp):
AGTCAGAAAATGAAAAATGATTGGGATTAAACACG
Found at i:3337239 original size:35 final size:35
Alignment explanation
Indices: 3337189--3337413 Score: 136
Period size: 35 Copynumber: 6.4 Consensus size: 35
3337179 NNNNNNNNNN
* *
3337189 TTGACTTATGATTTAATCCCGATCGTTTTCATTTT
1 TTGACTCATGGTTTAATCCCGATCGTTTTCATTTT
* * * * *
3337224 TTGACTCATGTTTTAATTCTGGTCATTATT--TTTT
1 TTGACTCATGGTTTAATCCCGATCGTT-TTCATTTT
* * * * *
3337258 CTTCCACTCGTGTTTTAATCTCCG-TTGTCTTCATTTT
1 -TT-GACTCATGGTTTAATC-CCGATCGTTTTCATTTT
* *
3337295 TTGACTCGTGGTTTAATCTCGATCGTTTTTCATTTT
1 TTGACTCATGGTTTAATCCCGATCG-TTTTCATTTT
* * * * *
3337331 TTGACTCGTGGTTTCATCTC-AGTCATTTTCATTCT
1 TTGACTCATGGTTTAATCCCGA-TCGTTTTCATTTT
* * ** *
3337366 CTGACTCATGCTTTAACTGTCG-TCGTTTTAATTTT
1 TTGACTCATGGTTTAA-TCCCGATCGTTTTCATTTT
3337401 TTGACTCATGGTT
1 TTGACTCATGGTT
3337414 CAATGCTGGT
Statistics
Matches: 148, Mismatches: 31, Indels: 22
0.74 0.15 0.11
Matches are distributed among these distances:
34 6 0.04
35 84 0.57
36 52 0.35
37 6 0.04
ACGTcount: A:0.16, C:0.19, G:0.14, T:0.52
Consensus pattern (35 bp):
TTGACTCATGGTTTAATCCCGATCGTTTTCATTTT
Found at i:3337338 original size:71 final size:70
Alignment explanation
Indices: 3337263--3337413 Score: 160
Period size: 71 Copynumber: 2.1 Consensus size: 70
3337253 TTTTTCTTCC
* * ** * * * * *
3337263 ACTCGTGTTTTAATCTCCGTTGTCTTCATTTTTTGACTCGTGGTTTAA-TCTCGATCGTTTTTCA
1 ACTCGTGGTTTAATCTCAGTCATCTTCATTCTCTGACTCATGCTTTAACTCTCG-TCG-TTTTAA
3337327 TTTTTTG
64 TTTTTTG
* * *
3337334 ACTCGTGGTTTCATCTCAGTCATTTTCATTCTCTGACTCATGCTTTAACTGTCGTCGTTTTAATT
1 ACTCGTGGTTTAATCTCAGTCATCTTCATTCTCTGACTCATGCTTTAACTCTCGTCGTTTTAATT
3337399 TTTTG
66 TTTTG
*
3337404 ACTCATGGTT
1 ACTCGTGGTT
3337414 CAATGCTGGT
Statistics
Matches: 66, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
70 21 0.32
71 41 0.62
72 4 0.06
ACGTcount: A:0.15, C:0.20, G:0.15, T:0.50
Consensus pattern (70 bp):
ACTCGTGGTTTAATCTCAGTCATCTTCATTCTCTGACTCATGCTTTAACTCTCGTCGTTTTAATT
TTTTG
Found at i:3337437 original size:35 final size:35
Alignment explanation
Indices: 3337321--3337464 Score: 84
Period size: 35 Copynumber: 4.1 Consensus size: 35
3337311 TCTCGATCGT
* * *
3337321 TTTTCATTTTTTGACTCGTGGTTTC-AT-CTCAGTCA
1 TTTTCAATTTTTGACTCATGG-TTCAATGCT-GGTCA
* * * * *
3337356 TTTTC-ATTCTCTGACTCATGCTTTAACTG-TCGTCG
1 TTTTCAATT-TTTGACTCATGGTTCAA-TGCTGGTCA
3337391 TTTT-AATTTTTTGACTCATGGTTCAATGCTGGTCA
1 TTTTCAA-TTTTTGACTCATGGTTCAATGCTGGTCA
* * **
3337426 TTTTCAATTTTTGGA-TCATGATTTAATTTTGGTCA
1 TTTTCAATTTTT-GACTCATGGTTCAATGCTGGTCA
3337461 TTTT
1 TTTT
3337465 TATTTTCTAA
Statistics
Matches: 84, Mismatches: 16, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
34 6 0.07
35 70 0.83
36 8 0.10
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (35 bp):
TTTTCAATTTTTGACTCATGGTTCAATGCTGGTCA
Found at i:3337486 original size:105 final size:105
Alignment explanation
Indices: 3337391--3337620 Score: 277
Period size: 105 Copynumber: 2.2 Consensus size: 105
3337381 ACTGTCGTCG
* * * * *
3337391 TTTTAATTTTTTGACTCATGGTTCAATGCTGGTCATTTTCAATTTTTGGA-TCATGATTTAATTT
1 TTTTCATTTTTTGACTCATGGTTCAATCCTAGTCATTTT-AATTTTTGAACTCATGATTTAATTC
3337455 TGGTCATTTTTATTT-TCTAACTTGTGATTTAATTGCAGTCA
65 TGGTCATTTTTATTTCTCTAACTTGTGATTTAA-TGCAGTCA
* * * * *
3337496 TTTTCATTTCTTGACT-AGTGGTTTAATCCTAGTCATTTTTATTTTTTAACTCATGATTTCATTC
1 TTTTCATTTTTTGACTCA-TGGTTCAATCCTAGTCATTTTAATTTTTGAACTCATGATTTAATTC
** * *
3337560 TGGTTGTTTTTATTTCTTTGACTTGTGATTTAATGCCAGTCA
65 TGGTCATTTTTATTTCTCTAACTTGTGATTTAATG-CAGTCA
3337602 TTTTCATTTTTTGACTCAT
1 TTTTCATTTTTTGACTCAT
3337621 CATTTAATTT
Statistics
Matches: 105, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
104 8 0.08
105 59 0.56
106 37 0.35
107 1 0.01
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.54
Consensus pattern (105 bp):
TTTTCATTTTTTGACTCATGGTTCAATCCTAGTCATTTTAATTTTTGAACTCATGATTTAATTCT
GGTCATTTTTATTTCTCTAACTTGTGATTTAATGCAGTCA
Found at i:3337627 original size:106 final size:104
Alignment explanation
Indices: 3337214--3337652 Score: 289
Period size: 106 Copynumber: 4.2 Consensus size: 104
3337204 ATCCCGATCG
* * * * * * *
3337214 TTTTCATTTTTTGACTCATGTTTTAATTCTGGTCATTATT-TTTTCTTCCACTCGTGTTTTAATC
1 TTTTAATTTTTTAACTCATGATTTAATTCTGGTCATTTTTATTTTC-T-AACTTGTGATTTAAT-
* ** * * * *
3337278 T-CCGTTGTCTTCATTTTTTGACTCGTGGTTTAATCTCGATCGT
63 TGCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTAG-TC-A
* * * * * * * * * ** * *
3337321 TTTTCATTTTTTGACTCGTGGTTTCA-TCTCAGTCATTTTCATTCTCTGACTCATGCTTTAACTG
1 TTTTAATTTTTTAACTCATGATTTAATTCT-GGTCATTTTTATTTTCTAACTTGTGATTTAATTG
* * * *
3337385 TC-GTCGTTTTAATTTTTTGACTCATGGTTCAATGCTGGTCA
65 -CAGTCATTTTCATTTTTTGACTCATGGTTTAAT-CTAGTCA
** *
3337426 TTTTCAATTTTTGGA-TCATGATTTAATTTTGGTCATTTTTATTTTCTAACTTGTGATTTAATTG
1 TTTT-AATTTTTTAACTCATGATTTAATTCTGGTCATTTTTATTTTCTAACTTGTGATTTAATTG
*
3337490 CAGTCATTTTCATTTCTTGACT-AGTGGTTTAATCCTAGTCA
65 CAGTCATTTTCATTTTTTGACTCA-TGGTTTAAT-CTAGTCA
* * ** * *
3337531 TTTTTATTTTTTAACTCATGATTTCATTCTGGTTGTTTTTATTTCTTTGACTTGTGATTTAA-TG
1 TTTTAATTTTTTAACTCATGATTTAATTCTGGTCATTTTTATTT-TCTAACTTGTGATTTAATTG
** *
3337595 CCAGTCATTTTCATTTTTTGACTCATCATTTAATTTCAGTCA
65 -CAGTCATTTTCATTTTTTGACTCATGGTTTAATCT-AGTCA
* *
3337637 TTTTCATTTTCTAACT
1 TTTTAATTTTTTAACT
3337653 TAAGGTTTAA
Statistics
Matches: 265, Mismatches: 53, Indels: 29
0.76 0.15 0.08
Matches are distributed among these distances:
104 9 0.03
105 102 0.38
106 114 0.43
107 36 0.14
108 4 0.02
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (104 bp):
TTTTAATTTTTTAACTCATGATTTAATTCTGGTCATTTTTATTTTCTAACTTGTGATTTAATTGC
AGTCATTTTCATTTTTTGACTCATGGTTTAATCTAGTCA
Found at i:3337825 original size:35 final size:35
Alignment explanation
Indices: 3337423--3337825 Score: 139
Period size: 35 Copynumber: 11.4 Consensus size: 35
3337413 TCAATGCTGG
* * * *
3337423 TCATTTTCAATTTTTGGA-TCATGATTTAATT-TTGG
1 TCATTTTC-ATTTTTTGACTTATGATTTAATTCCT-A
* * * * *
3337458 TCATTTTTATTTTCTAACTTGTGATTTAATTGC-A
1 TCATTTTCATTTTTTGACTTATGATTTAATTCCTA
* *
3337492 GTCATTTTCATTTCTTGAC-TAGTGGTTTAA-TCCTA
1 -TCATTTTCATTTTTTGACTTA-TGATTTAATTCCTA
* * * * *
3337527 GTCATTTTTATTTTTTAACTCATGATTTCATT-CTGG
1 -TCATTTTCATTTTTTGACTTATGATTTAATTCCT-A
** * * *
3337563 TTGTTTTTATTTCTTTGACTTGTGATTTAATGCC-A
1 TCATTTTCATTT-TTTGACTTATGATTTAATTCCTA
* * *
3337598 GTCATTTTCATTTTTTGACTCATCATTTAATTTC-A
1 -TCATTTTCATTTTTTGACTTATGATTTAATTCCTA
* * * * *
3337633 GTCATTTTCATTTTCTAACTTAAGGTTTAATCTTCT-
1 -TCATTTTCATTTTTTGACTTATGATTTAAT-TCCTA
* * * *
3337669 TCATTTTCACTTTTCT-ACTTATGGTTTAATCCCTG
1 TCATTTTCA-TTTTTTGACTTATGATTTAATTCCTA
** * ** * * *
3337704 TTGTTTTATATTTTTCTGAC-CGTGCTTTAGTCCCTA
1 TCATTTT-CATTTTT-TGACTTATGATTTAATTCCTA
* * ** * * *
3337740 -CTGTTTTCATTTTTTAACACATTGTTTTAATCCCTG
1 TC-ATTTTCATTTTTTGACTTA-TGATTTAATTCCTA
3337776 TCATTTTC-TATTTTTGACTTATGATTTAATTCCTA
1 TCATTTTCAT-TTTTTGACTTATGATTTAATTCCTA
3337811 TCATTTTCATTTTTT
1 TCATTTTCATTTTTT
3337826 AACTCGTTAT
Statistics
Matches: 274, Mismatches: 70, Indels: 48
0.70 0.18 0.12
Matches are distributed among these distances:
34 14 0.05
35 179 0.65
36 77 0.28
37 4 0.01
ACGTcount: A:0.20, C:0.16, G:0.10, T:0.55
Consensus pattern (35 bp):
TCATTTTCATTTTTTGACTTATGATTTAATTCCTA
Found at i:3337838 original size:35 final size:35
Alignment explanation
Indices: 3337743--3337841 Score: 101
Period size: 35 Copynumber: 2.8 Consensus size: 35
3337733 GTCCCTACTG
* * *
3337743 TTTTCATTTTTTAACACATTGTTTTAATCCCTGTCA
1 TTTTCATTTTTTAACTCATT-ATTTAATCCCTATCA
* * * *
3337779 TTTTC-TATTTTTGACTTATGATTTAATTCCTATCA
1 TTTTCAT-TTTTTAACTCATTATTTAATCCCTATCA
*
3337814 TTTTCATTTTTTAACTCGTTATTTAATC
1 TTTTCATTTTTTAACTCATTATTTAATC
3337842 TTGATCGCTT
Statistics
Matches: 49, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
35 34 0.69
36 15 0.31
ACGTcount: A:0.22, C:0.16, G:0.05, T:0.57
Consensus pattern (35 bp):
TTTTCATTTTTTAACTCATTATTTAATCCCTATCA
Found at i:3338073 original size:35 final size:34
Alignment explanation
Indices: 3338019--3338690 Score: 239
Period size: 35 Copynumber: 19.2 Consensus size: 34
3338009 AATTTTTATT
*
3338019 ATCATTTTCCTTTTCTGACTCGTGGTTTAATCTCG
1 ATCATTTTCATTTT-TGACTCGTGGTTTAATCTCG
* * * *
3338054 ATCATTTTCAATTTTTGACTCGTGATTGAATTTCA
1 ATCATTTTC-ATTTTTGACTCGTGGTTTAATCTCG
* ** * *
3338089 ATCATTTTTATTTCTCTGGTTTGTGATTTAATACT-G
1 ATCATTTTCATTT-T-TGACTCGTGGTTTAAT-CTCG
* * ** *
3338125 ATCGTTTTCATTTTCTGACTTGTAATTTAATCTTG
1 ATCATTTTCATTTT-TGACTCGTGGTTTAATCTCG
* ** * * * *
3338160 GTTGTTTTCATTTTCTAACCCATAGTTTAATCTCG
1 ATCATTTTCATTTT-TGACTCGTGGTTTAATCTCG
* * * * *
3338195 GTCGTTTTCATTTTCTGACTCGTAGTTTAATCCCA
1 ATCATTTTCATTTT-TGACTCGTGGTTTAATCTCG
* *
3338230 ATCATTTTCATTTTTTGACTTGTGATTTAATC-CAG
1 ATCATTTTCA-TTTTTGACTCGTGGTTTAATCTC-G
* ** * *
3338265 GTTGTTTTTATTTATTGACTCGTGGTTTAATCCCTG
1 ATCATTTTCATTT-TTGACTCGTGGTTTAATCTC-G
* * * *
3338301 -TCATTTT-TTTTTTGACTTGTGATTTAATC-CTA
1 ATCATTTTCATTTTTGACTCGTGGTTTAATCTC-G
* * *
3338333 ATCATTTTCATTTTCT-AGCTCATGCTTTAAATC-CC
1 ATCATTTTCATTTT-TGA-CTCGTGGTTT-AATCTCG
* * * * * * *
3338368 ATCGTTTTCACTTTCTAACTCATGCTTTAATTTCC
1 ATCATTTTCA-TTTTTGACTCGTGGTTTAATCTCG
*
3338403 ATCATTTTCATTTTTTGACTCGTGATTTAAT-TCTG
1 ATCATTTTCA-TTTTTGACTCGTGGTTTAATCTC-G
* * * * ** *
3338438 GTCATTTTTATTTCTAACTTATGGTTTAATC-CC
1 ATCATTTTCATTTTTGACTCGTGGTTTAATCTCG
* ** * *
3338471 CTTTTTCTTCATTTTCTGACTCATGGTTTAATCTCA
1 ATCATT-TTCATTTT-TGACTCGTGGTTTAATCTCG
* * *
3338507 ATCATTTTTCATTTTCTGACTGGTGGATTCATCTCG
1 ATCA-TTTTCATTTT-TGACTCGTGGTTTAATCTCG
* * * *
3338543 ATCATTTTCATGCTCTGACTCATGGTTTAAT-TCCT
1 ATCATTTTCAT-TTTTGACTCGTGGTTTAATCT-CG
* * * * *
3338578 ATCGTTTTAATTTTTTAACTTGTGGATTAATCTCG
1 ATCATTTTCA-TTTTTGACTCGTGGTTTAATCTCG
* * * * * * *
3338613 GTCATTTTTAATTTTAGACTCATGATTTAATTTTG
1 ATCA-TTTTCATTTTTGACTCGTGGTTTAATCTCG
* * * * * * *
3338648 GTCATTTTTATTTTTTCACTTGTGATTTAATTTTG
1 ATCATTTTCA-TTTTTGACTCGTGGTTTAATCTCG
3338683 ATCATTTT
1 ATCATTTT
3338691 AATCTCTATC
Statistics
Matches: 487, Mismatches: 121, Indels: 58
0.73 0.18 0.09
Matches are distributed among these distances:
32 2 0.00
33 26 0.05
34 51 0.10
35 324 0.67
36 81 0.17
37 3 0.01
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.52
Consensus pattern (34 bp):
ATCATTTTCATTTTTGACTCGTGGTTTAATCTCG
Found at i:3338259 original size:70 final size:69
Alignment explanation
Indices: 3338019--3338620 Score: 296
Period size: 70 Copynumber: 8.6 Consensus size: 69
3338009 AATTTTTATT
* * * *
3338019 ATCATTTTCCTTTTCTGACTCGTGGTTTAATCTCGATCATTTTCAATTTT-TGACTCGTGATTGA
1 ATCATTTTCATTTTCTGACTTGTGATTTAATCTCGATCATTTTC-ATTTTCTGACTCGTG-TTTA
**
3338083 ATTTCA
64 ATCCCA
* ** * * *
3338089 ATCATTTTTATTTCTCTGGTTTGTGATTTAATACT-GATCGTTTTCATTTTCTGACTTGTAATTT
1 ATCATTTTCATTT-TCTGACTTGTGATTTAAT-CTCGATCATTTTCATTTTCTGACTCGT-GTTT
***
3338153 AATCTTG
63 AATCCCA
* ** * *** * *
3338160 GTTGTTTTCATTTTCTAACCCAT-AGTTTAATCTCGGTCGTTTTCATTTTCTGACTCGTAGTTTA
1 ATCATTTTCATTTTCTGACTTGTGA-TTTAATCTCGATCATTTTCATTTTCTGACTCGT-GTTTA
3338224 ATCCCA
64 ATCCCA
* * ** *
3338230 ATCATTTTCATTTTTTGACTTGTGATTTAATC-CAGGTTGTTTTTATTTAT-TGACTCGTGGTTT
1 ATCATTTTCATTTTCTGACTTGTGATTTAATCTC-GATCATTTTCATTT-TCTGACTCGT-GTTT
*
3338293 AATCCCT
63 AATCCCA
* * * *
3338300 GTCATTTT--TTTTTTGACTTGTGATTTAATC-CTAATCATTTTCATTTTCT-AGCTCATGCTTT
1 ATCATTTTCATTTTCTGACTTGTGATTTAATCTC-GATCATTTTCATTTTCTGA-CTCGTG-TTT
3338361 AAATCCC-
63 -AATCCCA
* * * ** * * * *
3338368 ATCGTTTTCACTTTCTAACTCATGCTTTAATTTCCATCATTTTCATTTTTTGACTCGTGATTTAA
1 ATCATTTTCATTTTCTGACTTGTGATTTAATCTCGATCATTTTCATTTTCTGACTCGTG-TTTAA
* **
3338433 TTCTG
65 TCCCA
* * * * * ** ** *
3338438 GTCATTTTTA-TTTCTAACTTATGGTTTAATC-CCCTTTTTCTTCATTTTCTGACTCATGGTTTA
1 ATCATTTTCATTTTCTGACTTGTGATTTAATCTCGATCATT-TTCATTTTCTGACTCGT-GTTTA
*
3338501 ATCTCA
64 ATCCCA
* * ** *
3338507 ATCATTTTTCATTTTCTGACTGGTGGA-TTCATCTCGATCATTTTCATGCTCTGACTCATGGTTT
1 ATCA-TTTTCATTTTCTGACTTGT-GATTTAATCTCGATCATTTTCATTTTCTGACTCGT-GTTT
* *
3338571 AATTCCT
63 AATCCCA
* * * * *
3338578 ATCGTTTTAATTTTTTAACTTGTGGA-TTAATCTCGGTCATTTT
1 ATCATTTTCATTTTCTGACTTGT-GATTTAATCTCGATCATTTT
3338621 TAATTTTAGA
Statistics
Matches: 406, Mismatches: 102, Indels: 48
0.73 0.18 0.09
Matches are distributed among these distances:
67 3 0.01
68 51 0.13
69 56 0.14
70 199 0.49
71 90 0.22
72 7 0.02
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.51
Consensus pattern (69 bp):
ATCATTTTCATTTTCTGACTTGTGATTTAATCTCGATCATTTTCATTTTCTGACTCGTGTTTAAT
CCCA
Found at i:3338494 original size:104 final size:105
Alignment explanation
Indices: 3338163--3338585 Score: 265
Period size: 105 Copynumber: 4.0 Consensus size: 105
3338153 AATCTTGGTT
* * ** * *
3338163 GTTTTCATTTTCTAACCCATAG-TTTAATCTCGGTCGTTTTCATTTTCTGACTCGT-AGTTTAAT
1 GTTTTCACTTTCTAACTCAT-GCTTTAATCTCAATCATTTTCATTTTTTGACTCGTGA-TTTAAT
* * * ** * *
3338226 CCCAATCATTTTCATTTTTTGACTTGTGATTT-AAT-CCAGGTT
64 CCTAATCATTTTCATTTTCTAACTCATGCTTTAAATCCCA--TC
* * * * * * ** *
3338268 GTTTTTA-TTTATTGACTCGTGGTTTAATCCCTGTCATTTT--TTTTTTGACTTGTGATTTAATC
1 GTTTTCACTTT-CTAACTCATGCTTTAATCTCAATCATTTTCATTTTTTGACTCGTGATTTAATC
*
3338330 CTAATCATTTTCATTTTCTAGCTCATGCTTTAAATCCCATC
65 CTAATCATTTTCATTTTCTAACTCATGCTTTAAATCCCATC
* * *
3338371 GTTTTCACTTTCTAACTCATGCTTTAATTTCCATCATTTTCATTTTTTGACTCGTGATTTAATTC
1 GTTTTCACTTTCTAACTCATGCTTTAATCTCAATCATTTTCATTTTTTGACTCGTGATTTAATCC
** * * * * *
3338436 TGGTCATTTTTA-TTTCTAACTTATGGTTT-AATCCCCTT
66 TAATCATTTTCATTTTCTAACTCATGCTTTAAATCCCATC
* * * * * * *
3338474 TTTCTTCATTTTCTGACTCATGGTTTAATCTCAATCATTTTTCATTTTCTGACTGGTGGA-TTCA
1 GTT-TTCACTTTCTAACTCATGCTTTAATCTCAATCA-TTTTCATTTTTTGACTCGT-GATTTAA
* ** * * * *
3338538 T-CTCGATCATTTTCATGCTCTGACTCATGGTTTAATTCCTATC
63 TCCT-AATCATTTTCATTTTCTAACTCATGCTTTAAATCCCATC
3338581 GTTTT
1 GTTTT
3338586 AATTTTTTAA
Statistics
Matches: 247, Mismatches: 57, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
103 79 0.32
104 55 0.22
105 89 0.36
106 17 0.07
107 7 0.03
ACGTcount: A:0.19, C:0.19, G:0.11, T:0.50
Consensus pattern (105 bp):
GTTTTCACTTTCTAACTCATGCTTTAATCTCAATCATTTTCATTTTTTGACTCGTGATTTAATCC
TAATCATTTTCATTTTCTAACTCATGCTTTAAATCCCATC
Found at i:3338925 original size:35 final size:36
Alignment explanation
Indices: 3338846--3338930 Score: 109
Period size: 36 Copynumber: 2.4 Consensus size: 36
3338836 TAATTGTTTC
* * *
3338846 CATTTTTTGACTCATGGTATAATCATGATCATTTTT
1 CATTTTCTGACTCATGGTATAATCATGACCATCTTT
* * *
3338882 CATTTTCTGACTCATTGTTTAATCCTGACCA-CTTT
1 CATTTTCTGACTCATGGTATAATCATGACCATCTTT
3338917 CATTTTCTGACTCA
1 CATTTTCTGACTCA
3338931 CGCTTTAATC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 17 0.40
36 26 0.60
ACGTcount: A:0.22, C:0.21, G:0.09, T:0.47
Consensus pattern (36 bp):
CATTTTCTGACTCATGGTATAATCATGACCATCTTT
Found at i:3338972 original size:70 final size:70
Alignment explanation
Indices: 3338878--3339027 Score: 167
Period size: 70 Copynumber: 2.1 Consensus size: 70
3338868 TCATGATCAT
* ** * * *
3338878 TTTTCATTTTCTGACTCATTGTTTAAT-CCTGACCACTTTCATTTTCTGACTCACGCTTTAATCC
1 TTTTCATTTTCTCACTCAGGGTTTAATACC-AACCACTTTCATTTTCTAACACACGCTTTAATCC
* *
3338942 TTGTGG
65 TAGTCG
* * * * *
3338948 TTTTCATTTTCTCACTCAGGGTTTAGTACCAATCATTTTCATTTTCTAACACATGCTTTAATTCT
1 TTTTCATTTTCTCACTCAGGGTTTAATACCAACCACTTTCATTTTCTAACACACGCTTTAATCCT
3339013 AGTCG
66 AGTCG
3339018 TTTTCATTTT
1 TTTTCATTTT
3339028 TCAACAAGCG
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
70 64 0.97
71 2 0.03
ACGTcount: A:0.19, C:0.22, G:0.10, T:0.49
Consensus pattern (70 bp):
TTTTCATTTTCTCACTCAGGGTTTAATACCAACCACTTTCATTTTCTAACACACGCTTTAATCCT
AGTCG
Found at i:3339022 original size:35 final size:34
Alignment explanation
Indices: 3338914--3339067 Score: 109
Period size: 35 Copynumber: 4.4 Consensus size: 34
3338904 TCCTGACCAC
* * * *
3338914 TTTCATTTTCTGACTCACGCTTTAATCCTTGTGGT
1 TTTCATTTTCTAACACA-GCTTTAATCCTAGTCGT
* * * * * *
3338949 TTTCATTTTCTCACTCAGGGTTTAGTACC-AATCAT
1 TTTCATTTTCTAACACA-GCTTTAAT-CCTAGTCGT
*
3338984 TTTCATTTTCTAACACATGCTTTAATTCTAGTCGT
1 TTTCATTTTCTAACACA-GCTTTAATCCTAGTCGT
3339019 TTTCATTTT-TCAACA-AGCGTTTTAATCCTAGT-GAT
1 TTTCATTTTCT-AACACAGC--TTTAATCCTAGTCG-T
3339054 TTTCATTTTCTAAC
1 TTTCATTTTCTAAC
3339068 TCGTAATTTA
Statistics
Matches: 95, Mismatches: 17, Indels: 14
0.75 0.13 0.11
Matches are distributed among these distances:
33 2 0.02
34 4 0.04
35 86 0.91
36 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.47
Consensus pattern (34 bp):
TTTCATTTTCTAACACAGCTTTAATCCTAGTCGT
Found at i:3339142 original size:35 final size:35
Alignment explanation
Indices: 3339096--3339830 Score: 287
Period size: 35 Copynumber: 20.9 Consensus size: 35
3339086 AATTTTCATT
* *
3339096 ATCGTTTTCATTTTCTGATTTGTGGTTTAATCTTG
1 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCTTG
* * *
3339131 ATCGTTTTCATTTTCTGACTCATGATTTAATTTTG
1 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCTTG
* * * * * **
3339166 ATCATTTTTA-TTTCATTGGCTTGTGATTTAATAC-CA
1 ATCGTTTTCATTTTC--TGACTCGTGGTTTAAT-CTTG
* * *
3339202 ATCGTTTTCATTTTCTAACTCATGATTTAATCTTG
1 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCTTG
* * * * **
3339237 ATCATTTTCATTTTCTAACCCATGG-TTAATCCCG
1 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCTTG
* *
3339271 ATCGTTTTCATTTTCTGAAC-CATGGTTTAATTTTG
1 ATCGTTTTCATTTTCTG-ACTCGTGGTTTAATCTTG
* * * * *
3339306 GTTGTTTTCATTTTTTGACTCGTGATTTAATCTCG
1 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCTTG
* * **
3339341 ATCGTTTTCATTTTTTGACTCGTAGTTTAAT-TCCC
1 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCT-TG
* * * * *
3339376 ATCATTTTTATTTTCT-ATTTGGTGATTTAAT-TTCG
1 ATCGTTTTCATTTTCTGA-CTCGTGGTTTAATCTT-G
* * * * *
3339411 GTCATTTTTATTTTTTTGACTCATGGTTTAATCTTG
1 ATCGTTTTCA-TTTTCTGACTCGTGGTTTAATCTTG
* * * * *
3339447 ATCATTTTTCATTTTTTGACTGGTGGTTTCATC-TC
1 ATC-GTTTTCATTTTCTGACTCGTGGTTTAATCTTG
* * * * *
3339482 AGTCATTTTCATTCTCTAACTTGTGGTTTAATCCCTG
1 A-TCGTTTTCATTTTCTGACTCGTGGTTTAAT-CTTG
* * *
3339519 -TGGTTTTAATTTTCTGACACGTGGTTTAATCTTG
1 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCTTG
** ** * * *
3339553 ATCAATTTC-TGTTTCAAACTCATGATTTAATTTTG
1 ATCGTTTTCAT-TTTCTGACTCGTGGTTTAATCTTG
* * * * * *
3339588 GTCAATTTT-ATTTTCTGACTTGTGATTTAGT-TCCG
1 ATC-GTTTTCATTTTCTGACTCGTGGTTTAATCT-TG
* * * * * *
3339623 GTTGTTTTCATTTTTTGACTAGTGGTCTAATCTCG
1 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCTTG
* * * *
3339658 ATCTTTTTCATTTT-TCGACTCGTGATTTGATTTTG
1 ATCGTTTTCATTTTCT-GACTCGTGGTTTAATCTTG
* * * * * * ** **
3339693 GTCATTTTTATTTCTTTGATTCATTTTTTAATGC-CC
1 ATCGTTTTCATTT-TCTGACTCGTGGTTTAAT-CTTG
* * * * *
3339729 ATCATTTTCATTTTTTGACTCATTGTTTAATTTTG
1 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCTTG
* * * **
3339764 ATCATTTTC-TTTGTCTGACTCATGGTTTAGTCTCA
1 ATCGTTTTCATTT-TCTGACTCGTGGTTTAATCTTG
* *
3339799 ATCATTTTCACTTTT-TGACTTGTGGTTTAATC
1 ATCGTTTTCA-TTTTCTGACTCGTGGTTTAATC
3339831 CCCCATTGTT
Statistics
Matches: 526, Mismatches: 141, Indels: 66
0.72 0.19 0.09
Matches are distributed among these distances:
34 49 0.09
35 371 0.71
36 89 0.17
37 17 0.03
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.53
Consensus pattern (35 bp):
ATCGTTTTCATTTTCTGACTCGTGGTTTAATCTTG
Found at i:3339196 original size:71 final size:70
Alignment explanation
Indices: 3339115--3339460 Score: 251
Period size: 71 Copynumber: 4.9 Consensus size: 70
3339105 ATTTTCTGAT
* *
3339115 TTGTGGTTTAATCTTGATCGTTTTCATTTTCTGACTCATGATTTAATTTTGATCATTTTTATTTC
1 TTGTGATTTAATCTCGATCGTTTTCATTTTCTGACTCATGATTTAATTTTGATCATTTTTATTTC
3339180 ATTGGC
66 ATT-GC
* * * *
3339186 TTGTGATTTAATAC-CAATCGTTTTCATTTTCTAACTCATGATTTAATCTTGATCATTTTCATTT
1 TTGTGATTTAAT-CTCGATCGTTTTCATTTTCTGACTCATGATTTAATTTTGATCATTTTTA-TT
***
3339250 TCTAACCC
64 TC-ATTGC
* * * * ** *
3339258 ATG-G--TTAATCCCGATCGTTTTCATTTTCTGAAC-CATGGTTTAATTTTGGTTGTTTTCATTT
1 TTGTGATTTAATCTCGATCGTTTTCATTTTCTG-ACTCATGATTTAATTTTGATCATTTTTATTT
*
3339319 -TTTGAC
65 CATTG-C
* * * ***
3339325 TCGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCGT-AGTTTAATTCCCATCATTTTTATTT
1 TTGTGATTTAATCTCGATCGTTTTCATTTTCTGACTCATGA-TTTAATTTTGATCATTTTTA-TT
3339389 TCTATT--
64 TC-ATTGC
* * * * * * * *
3339395 TGGTGATTTAATTTCGGTCATTTTTATTTTTTTGACTCATGGTTTAATCTTGATCATTTTTCATT
1 TTGTGATTTAATCTCGATCGTTTTCA-TTTTCTGACTCATGATTTAATTTTGATCATTTTT-ATT
3339460 T
64 T
3339461 TTTGACTGGT
Statistics
Matches: 212, Mismatches: 46, Indels: 34
0.73 0.16 0.12
Matches are distributed among these distances:
67 2 0.01
68 5 0.02
69 44 0.21
70 62 0.29
71 87 0.41
72 9 0.04
73 3 0.01
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (70 bp):
TTGTGATTTAATCTCGATCGTTTTCATTTTCTGACTCATGATTTAATTTTGATCATTTTTATTTC
ATTGC
Found at i:3339279 original size:34 final size:34
Alignment explanation
Indices: 3339193--3339297 Score: 122
Period size: 34 Copynumber: 3.1 Consensus size: 34
3339183 GGCTTGTGAT
* * * *
3339193 TTAATACCAATCGTTTTCATTTTCTAACTCATGAT
1 TTAATCCCGATCGTTTTCATTTTCTAACCCATG-G
** *
3339228 TTAATCTTGATCATTTTCATTTTCTAACCCATGG
1 TTAATCCCGATCGTTTTCATTTTCTAACCCATGG
3339262 TTAATCCCGATCGTTTTCATTTTCTGAA-CCATGG
1 TTAATCCCGATCGTTTTCATTTTCT-AACCCATGG
3339296 TT
1 TT
3339298 TAATTTTGGT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
34 30 0.51
35 29 0.49
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.46
Consensus pattern (34 bp):
TTAATCCCGATCGTTTTCATTTTCTAACCCATGG
Found at i:3339300 original size:69 final size:70
Alignment explanation
Indices: 3339130--3339354 Score: 204
Period size: 69 Copynumber: 3.2 Consensus size: 70
3339120 GTTTAATCTT
* * * ** *** *
3339130 GATCGTTTTCATTTTCTGACTCATGATTTAATTTTGATCATTTTTA-TTTCATTGGCTTGTGATT
1 GATCGTTTTCATTTTCTAACTCATGATTTAATCTTGATCATTTTCATTTTC--TAACCCATGAGT
*
3339194 TAATACC
64 TAATCCC
*
3339201 AATCGTTTTCATTTTCTAACTCATGATTTAATCTTGATCATTTTCATTTTCTAACCCATG-GTTA
1 GATCGTTTTCATTTTCTAACTCATGATTTAATCTTGATCATTTTCATTTTCTAACCCATGAGTTA
3339265 ATCCC
66 ATCCC
* * * ** * * * * *
3339270 GATCGTTTTCATTTTCTGAAC-CATGGTTTAATTTTGGTTGTTTTCATTTTTTGACTCGTGATTT
1 GATCGTTTTCATTTTCT-AACTCATGATTTAATCTTGATCATTTTCATTTTCTAACCCATGAGTT
*
3339334 AATCTC
65 AATCCC
3339340 GATCGTTTTCATTTT
1 GATCGTTTTCATTTT
3339355 TTGACTCGTA
Statistics
Matches: 128, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
69 53 0.41
70 29 0.23
71 42 0.33
72 4 0.03
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.51
Consensus pattern (70 bp):
GATCGTTTTCATTTTCTAACTCATGATTTAATCTTGATCATTTTCATTTTCTAACCCATGAGTTA
ATCCC
Found at i:3339380 original size:139 final size:140
Alignment explanation
Indices: 3339130--3339392 Score: 320
Period size: 139 Copynumber: 1.9 Consensus size: 140
3339120 GTTTAATCTT
* * *
3339130 GATCGTTTTCATTTTCTGACTCATGATTTAATTTTGATCATTTTTATTTCATTGGCTTGTGATTT
1 GATCGTTTTCATTTTCTGACTCATGATTTAATTTTGATCATTTTCATTTCATTGACTCGTGATTT
**
3339195 AATACCAATCGTTTTCATTTTCTAACTCATGATTTAATCTTGATCATTTTCATTTTCTAACCCAT
66 AATACCAATCGTTTTCATTTTCTAACTCATGATTTAATCTCCATCATTTTCATTTTCTAACCCAT
3339260 GGTTAATCCC
131 GGTTAATCCC
* * ** *
3339270 GATCGTTTTCATTTTCTGAAC-CATGGTTTAATTTTGGTTGTTTTCATTT-TTTGACTCGTGATT
1 GATCGTTTTCATTTTCTG-ACTCATGATTTAATTTTGATCATTTTCATTTCATTGACTCGTGATT
* * * * *
3339333 TAAT-CTCGATCGTTTTCATTTTTTGACTCGT-AGTTTAAT-TCCCATCATTTTTATTTTCTA
65 TAATAC-CAATCGTTTTCATTTTCTAACTCATGA-TTTAATCT-CCATCATTTTCATTTTCTA
3339393 TTTGGTGATT
Statistics
Matches: 104, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
138 3 0.03
139 58 0.56
140 41 0.39
141 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.51
Consensus pattern (140 bp):
GATCGTTTTCATTTTCTGACTCATGATTTAATTTTGATCATTTTCATTTCATTGACTCGTGATTT
AATACCAATCGTTTTCATTTTCTAACTCATGATTTAATCTCCATCATTTTCATTTTCTAACCCAT
GGTTAATCCC
Found at i:3340008 original size:35 final size:35
Alignment explanation
Indices: 3339969--3340052 Score: 87
Period size: 35 Copynumber: 2.4 Consensus size: 35
3339959 CTCAATCGCA
* * * **
3339969 TTCATTTTTTGACTCATGGTTTAACCCTAGTGGTT
1 TTCATTTTTTGACTAAGGGTTTAACCCTAATCATT
* * **
3340004 TTCATTTTATCACTAAGGGTTTATTCCTAATCATT
1 TTCATTTTTTGACTAAGGGTTTAACCCTAATCATT
3340039 TTCATTTTTTGACT
1 TTCATTTTTTGACT
3340053 TGTGCTTTAA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (35 bp):
TTCATTTTTTGACTAAGGGTTTAACCCTAATCATT
Found at i:3340072 original size:35 final size:35
Alignment explanation
Indices: 3340023--3340116 Score: 102
Period size: 35 Copynumber: 2.7 Consensus size: 35
3340013 TCACTAAGGG
* *
3340023 TTTATTCCTAATCATTTTCATTTTTTGACTT-GTGC
1 TTTAATCCTGATCATTTTCATTTTTT-ACTTCGTGC
* * *
3340058 TTTAATACC-GATCATTTTTATTTTTTAGTTCGTGT
1 TTTAAT-CCTGATCATTTTCATTTTTTACTTCGTGC
*
3340093 TTTAATCCTGGTCATTTTCATTTT
1 TTTAATCCTGATCATTTTCATTTT
3340117 CTAACTCGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
34 5 0.10
35 42 0.86
36 2 0.04
ACGTcount: A:0.18, C:0.15, G:0.10, T:0.57
Consensus pattern (35 bp):
TTTAATCCTGATCATTTTCATTTTTTACTTCGTGC
Found at i:3340214 original size:35 final size:35
Alignment explanation
Indices: 3340160--3340839 Score: 322
Period size: 35 Copynumber: 19.3 Consensus size: 35
3340150 ATTGTTTTCG
* **
3340160 TTTTTGAACTCATGGTTTAATATCGATCATTTTCAT
1 TTTTTG-ACTCATGATTTAATCCCGATCATTTTCAT
* *
3340196 TTTTTGACTCTTGATTTAATCCCAATCATTTTCAT
1 TTTTTGACTCATGATTTAATCCCGATCATTTTCAT
* * * * * *
3340231 TTTCTGACTCATGTTTTGATTCTGGTCATTATT-AT
1 TTTTTGACTCATGATTTAATCCCGATCATT-TTCAT
** * * ** *
3340266 TTCTCCGACTCGTGGTTTAATCCCTG-TTGTTTTTAT
1 TT-TTTGACTCATGATTTAATCCC-GATCATTTTCAT
* * * *
3340302 TTTCTGACCCGT-AGTTTAATCCCGATCGTTTTTCAT
1 TTTTTGACTCATGA-TTTAATCCCGATC-ATTTTCAT
* * * *
3340338 TTTTTGACCCGTGGTTTAATCCCGATCGTTTTCAT
1 TTTTTGACTCATGATTTAATCCCGATCATTTTCAT
* * * * *
3340373 TCTCTGACTCATGTTTTAATCCTC-ATCCTTTTAAT
1 TTTTTGACTCATGATTTAATCC-CGATCATTTTCAT
* * * * *
3340408 TTTCTGACTCATGGTTTAATCCTGGTCATTTTCAA
1 TTTTTGACTCATGATTTAATCCCGATCATTTTCAT
* * * * *** * *
3340443 TTTTAGGCTTACGATTTAATTTTGGTCATTTTTAT
1 TTTTTGACTCATGATTTAATCCCGATCATTTTCAT
* * * *
3340478 TTTCTAACTCGTGATTTAAT-TCGAGTCATTTTCAT
1 TTTTTGACTCATGATTTAATCCCGA-TCATTTTCAT
* * * *
3340513 TTCTTGACT-AGTGGTTTAATCCTGGTCATTTTCAT
1 TTTTTGACTCA-TGATTTAATCCCGATCATTTTCAT
* * * * * * *
3340548 TTTCTAACTCATGATTTGATTCTGGTCATTTTTAT
1 TTTTTGACTCATGATTTAATCCCGATCATTTTCAT
* *
3340583 TTCTTT-ACTCATGATTTAATGCCGTTCATTTTCAT
1 TT-TTTGACTCATGATTTAATCCCGATCATTTTCAT
* * * * *
3340618 TTTTTGACTCATCATTTAATCTTC-TTCACTTTCAC
1 TTTTTGACTCATGATTTAATC-CCGATCATTTTCAT
* * * ** *
3340653 TTTTCGACTTATGGTTTAATCCCTG-TTGTTTTATAT
1 TTTTTGACTCATGATTTAATCCC-GATCATTTT-CAT
* * * * *
3340689 TTTTTGTCTCGTGCTTTAATCCCTATCGTTTTCAT
1 TTTTTGACTCATGATTTAATCCCGATCATTTTCAT
* *
3340724 TTTTTGACGCGTTG-TTTAATCCCTG-TCA-TTTCTAT
1 TTTTTGACTC-ATGATTTAATCCC-GATCATTTTC-AT
* * *
3340759 TTTTTGACTTATGATTTAATTCCTATCATTTTCAT
1 TTTTTGACTCATGATTTAATCCCGATCATTTTCAT
* * * **
3340794 TTTTTGACTCGTGGTATAATCTTGATCATTTTTCAT
1 TTTTTGACTCATGATTTAATCCCGATCA-TTTTCAT
*
3340830 TTTTTAACTC
1 TTTTTGACTC
3340840 GTCATTTACT
Statistics
Matches: 489, Mismatches: 127, Indels: 56
0.73 0.19 0.08
Matches are distributed among these distances:
34 13 0.03
35 362 0.74
36 113 0.23
37 1 0.00
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.51
Consensus pattern (35 bp):
TTTTTGACTCATGATTTAATCCCGATCATTTTCAT
Found at i:3340260 original size:70 final size:70
Alignment explanation
Indices: 3340186--3353200 Score: 1073
Period size: 70 Copynumber: 183.8 Consensus size: 70
3340176 TTAATATCGA
* * *
3340186 TCATTTTCATTTTTTGACTCTTGATTTAATCCCAATCATTTTCATTTTCTGACTCATGTTTTGAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
*
3340251 TCTGG
66 CCTGG
** * ** * * *
3340256 TCATTATT-ATTTCTCCGACTCGTGGTTTAATCCCTG-TTGTTTTTATTTTCTGACCCGTAG-TT
1 TCATT-TTCATTT-TTTGACTCGTGATTTAATCCC-GATCATTTTCATTTTCTGACTCAT-GTTT
* *
3340318 TAATCCCGA
62 TAATCCTGG
* * * * *
3340327 TCGTTTTTCATTTTTTGACCCGTGGTTTAATCCCGATCGTTTTCATTCTCTGACTCATGTTTTAA
1 TC-ATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
**
3340392 TCCTCA
65 TCCTGG
* * * * * * * * * * * *
3340398 TCCTTTTAATTTTCTGACTCATGGTTTAATCCTGGTCATTTTCAATTTT-AGGCTTACGATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTC-ATTTTCTGACTCATGTTTTAA
**
3340462 TTTTGG
65 TCCTGG
* * * * *
3340468 TCATTTTTATTTTCTAACTCGTGATTTAAT-TCGAGTCATTTTCA-TTTCTTGACT-AGTGGTTT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTC-TGACTCA-TGTTTT
3340530 AATCCTGG
63 AATCCTGG
* * * * * * * * * *
3340538 TCATTTTCATTTTCTAACTCATGATTTGATTCTGGTCATTTTTA-TTTCTTTACTCATGATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTC-TGACTCATGTTTTAA
*
3340602 TGCC-GT
65 T-CCTGG
* * * * * * *
3340608 TCATTTTCATTTTTTGACTCATCATTTAATCTTC-TTCACTTTCACTTTTC-GACTTATGGTTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATC-CCGATCATTTTCA-TTTTCTGACTCATGTTTTA
3340671 ATCCCT-G
64 AT-CCTGG
** * * * * * * * *
3340678 TTGTTTTATATTTTTTGTCTCGTGCTTTAATCCCTATCGTTTTCATTTTTTGACGCGT-TGTTTA
1 TCATTTT-CATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGT-TTTA
3340742 ATCCCT-G
64 AT-CCTGG
** * * * * * *
3340749 TCA-TTTCTATTTTTTGACTTATGATTTAATTCCTATCATTTTCATTTTTTGACTCGTGGTATAA
1 TCATTTTC-ATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
* *
3340813 TCTTGA
65 TCCTGG
* * * * ** *
3340819 TCATTTTTCATTTTTTAACTCGTCATTTACTTTCC-ATCGCTTTCATTTTCTGACTGGCGATTTT
1 TCA-TTTTCATTTTTTGACTCGTGATTTA-ATCCCGATCATTTTCATTTTCTGACT--C-ATGTT
**
3340883 CATTTCTCACTAAGGG
61 --TTAATC-CT---GG
* ** * * ** * * * *
3340899 TTCAATCCCACTCATTTTCATTTTCTGACTCGTGCTTTAAT-GAGGTCGTTTACAATTTT-TAAC
1 -TCATTTTCA-T-TTTTT--------GACTCGTGATTTAATCCCGATCATTTTC-ATTTTCTGAC
* * *
3340962 TCACGTTTTACTCCTTG
54 TCATGTTTTAATCCTGG
* * * * * * *
3340979 TTACTTTCATTTTTTGACTCCTAATTTAATTTCAGTAATTTTTATTATCATTTTCCTTTTCTGAC
1 TCATTTTCATTTTTTGACTCGTGATTTAA-TCCCG-----------ATCATTTTCATTTTCTGAC
* * *
3341044 -CGTGATTTAAT-CTCGC
54 TCATGTTTTAATCCT-GG
* * ** * * * * ** **
3341060 TCATTTTCATTTTTTGACTCATGATTGAATTTCAATCATTTTTATTTCTTTGGCTTGTGAATTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTT-TCTGACTCATGTTTTAA
* *
3341125 TACTGA
65 TCCTGG
* * * * * * *** * ** * * * * *
3341131 TCGTTTTTATTTTCTAACTCATAATTTAATTTTGGTTGTTTTCATTTTCTAACCCGTGGTTTAAC
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
* *
3341196 CCCGA
66 CCTGG
* * * * ** * * * * *
3341201 TCGTTTTCATTCTCTGACTCATGATTTAATCTAGGTCATTTTTATTTTTTGACTCGTGGTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
**
3341266 CCTAA
66 CCTGG
** * * * * * *
3341271 TTTTTTTTATTTTCTGACTTGTGATTTAATCCTGATCATTTTCATTTTCTAACTCATGCTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA-
**
3341336 TCC-CA
65 TCCTGG
* * * * * * * * *
3341341 TCGTTTTCATTTTCTGACTCGTGATTTAATTCTGGTTATTTTTATTTT-TGACTTATGGTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
*
3341405 CCTCG
66 CCTGG
* * * * * ** * * ** ** *
3341410 T-TTTCTTCATATTCTGACTCATGGTTTAATTTCAATCATTTTTCATTTTTTGACTGGTGGATTC
1 TCATT-TTCATTTTTTGACTCGTGATTTAATCCCGATCA-TTTTCATTTTCTGACTCATGTTTTA
*
3341474 AT-CTCGA
64 ATCCT-GG
* * * * * * * * ** **
3341481 TCATTTTCATTCTCTGACTCATGGTTTAATTCCTG-TCGTTTTAATTTTCTAACTTGTGGATTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAA-TCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3341545 T-CTCGA
65 TCCT-GG
** * *** * *
3341551 TCACTTTT-AAATTTAGACTCGTGATTTAATTTGGGTCATTTTTATTTTCTGACT--TGTTATTT
1 TCA-TTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATG-T-TTT
* *
3341613 AAT-TTCGA
63 AATCCT-GG
* * * * * * *
3341621 TCATTTTAATTTTTTGACTAGTGGTTTAATCCCAATCATTTTTATTTCTTTGACTCATGATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTT-TCTGACTCATGTTTTAA
*
3341686 TGCC-GA
65 T-CCTGG
** * * * * *
3341692 TCATTTTCAAATTTTGACTCATCG-TTTAATTCCGATCATTTTCATTTGCTGAGTCATGGTTTAA
1 TCATTTTCATTTTTTGACTCGT-GATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3341756 TCTCT-A
65 TC-CTGG
* * * ** * * *
3341762 TCATTTTC-TCTTTTTAACTTG-GGTTTAATCCCCG-TTGTTTTACATTTTTTGACTCGTGCTTT
1 TCATTTTCAT-TTTTTGACTCGTGATTTAAT-CCCGATCATTTT-CATTTTCTGACTCATGTTTT
3341824 AATCCCT-G
63 AAT-CCTGG
** * * *** * * * * * *
3341832 T-AGTTTTCA-TTTTCCAGCACGTTG-TTTTATCTTTATCTTTTTTATTTT-TAACTCGTGATTC
1 TCA-TTTTCATTTTTTGA-CTCG-TGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTT
*
3341893 AATCCTAG
63 AATCCTGG
* * * * * * * * *
3341901 TCGTTTCCTTTTTTTGACTCAT-AGTGTAGTCCTGATCATTTTTCATTTTTTGACTCATGGTTTA
1 TCATTTTCATTTTTTGACTCGTGA-TTTAATCCCGATCA-TTTTCATTTTCTGACTCATGTTTTA
*
3341965 ATCCTTG
64 ATCCTGG
** * * * * * * * *
3341972 TGGTTTTCATTTTCTCACTCATGGTTTAGTCCCAATCATTTTCATTTTCTAACTCATGCTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
* *
3342037 TCTAG
66 CCTGG
** ** ** * * *
3342042 TTGTTTTCATTTTTCAACAAGCG-TTTAAT-CCTAGTCATTTTCATTTTCTAACTCGTAATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTC---A--T--
* * **
3342105 TTTTGGTAATTTTCATTA
58 GTTT--TAA---TCCTGG
* * * ** ** * * *
3342123 TCATTTTCATTTTTTGATTTGTGGTTTAATCTTGATTGTTTTGATTTTCTTACTCATGATTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
* **
3342188 -TTCAA
66 CCT-GG
* * * * * * *
3342193 TCATTTTTATTTTAGTGGCTTGTGATTTAATACCAATCATTTTCATTTTCTGACTCATGATTTAA
1 TCATTTTCATTTT-TTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3342258 T-CTCGA
65 TCCT-GG
* * * * * * * *
3342264 TCATTTTCATTTTCTAACCCATG-GTTAATCCCAATCATTTTCATTTTTTGAAC-CATGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTG-ACTCATGTTTTAA
* *
3342327 T-TTCGA
65 TCCT-GG
* * * * * ** *
3342333 TTATTTTCATTTTTTGACTTGTGGTTTAATCTCGATCATTTTCATTTTTTGACTTGTGGTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA-
*
3342398 TCC--A
65 TCCTGG
* * * * * *** * * ** *
3342402 CCATTTTTATTTTCTAACTTGTGATTTAATTTGGGTCATTTTTATATTTTCTGACTTGTGGTTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCA-TTTT-CATTTTCTGACTCATGTTTTA
***
3342467 ATCCCAA
64 ATCCTGG
** * * * * * ** * *
3342474 TTGTCTTCATTTTCTGACTCGTGGTTTAA-CCTGATCATTTTTCCTTTTCT-AGCTGGTGGTTTC
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCA-TTTTCATTTTCTGA-CTCATGTTTTA
*
3342537 AT-CTCAG
64 ATCCT-GG
* * * * * * ** * * *
3342544 TCATTTTCACTCTCTAACTCGTGCTTTAATCCCTATGGTTTTAATTTTCTGACTCGTGGTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
* *
3342609 CTTGA
66 CCTGG
* * ** *** * * * * *
3342614 TCATTTTCAGTTTTAGACTTATGATTTAATTTTGGTCAATTTT-ATTTTCTAACTCGTGATTTAG
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATC-ATTTTCATTTTCTGACTCATGTTTTAA
*
3342678 TTCTGG
65 TCCTGG
** * * *** * * * * * * * *
3342684 TTGTTTTCATTTTTTAACTAGTGGCCTGATCTCGATCTTTTTCTTTTTTTGACTCGTGATTTGAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
**
3342749 TTTGG
66 CCTGG
* * * * * *
3342754 TTATTTTTATTTCTTTGAC-CTGTTATTTAATGCTGATCATTTTCATTTTTTGACTCAT-TGTTT
1 TCATTTTCATTT-TTTGACTC-GTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGT-TTT
** *
3342817 AATTTTGA
63 AATCCTGG
* * * ** * ** *
3342825 TCATTTTC-TTTTGCTGACTCATGGTTTAATGTCGGTCATTTTCACTTTT-TGACTTGTGGTTTA
1 TCATTTTCATTTT-TTGACTCGTGATTTAATCCCGATCATTTTCA-TTTTCTGACTCATGTTTTA
*
3342888 ATCCCCT-A
64 AT--CCTGG
** * * * * *
3342896 TTGTTTTACATTTTTTGACTCATGCTTTAATCCCTATCATTTTTATTTTTTGA-TGCAT-TGTTT
1 TCATTTT-CATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACT-CATGT-TTT
*
3342959 AATCCCT-T
63 AAT-CCTGG
* * *
3342967 TCATTTTTATTTTTTGACTCGTGATTTAATCCC-AGTCATTTTTCATATTT-TTACTCGTCG-TT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCA-TTTTCAT-TTTCTGACTCAT-GTTT
*
3343029 TAAT-CTCGA
62 TAATCCT-GG
* * * * * * ** ** * * * * * * *
3343038 TCGTTTTTATTTTTTAACTCATGGTGTAA-CCTTAGTGGTTTTTATTTTCTCATTAAGGGTTTAG
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTTAA
***
3343102 TCCCAA
65 TCCTGG
* * * * * ** *
3343108 TCATTTTCATTTTTAT-ACTCGTGCTTTAA-CACCAATCATTTTTATTTTTTAACTCACATTTTT
1 TCATTTTCATTTTT-TGACTCGTGATTTAATC-CCGATCATTTTCATTTTCTGACTCATGTTTTA
3343171 ATCCTGG
64 ATCCTGG
* * * * * * * * **
3343178 TCATTTTCATTTTCTAACGCGTAATTTCATTCCGATAATTTTCATTAT-TGTTTTCAT-TTTTGA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTG-ACTCATGTTTT-A
*
3343241 ACCCATGG
64 ATCC-TGG
* * * ** * *
3343249 TTTAATCTCGATCGTTTTCATTTTCTAACTCTTGATTTAATTTCAATCATTTTTATCTTTCT-AG
1 -------TC-A---TTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCAT-TTTCTGA-
** * * *
3343313 CTTGTGATTTAAT-GTAGA
53 CTCATGTTTTAATCCT-GG
* * * * * * * *
3343331 CCATTTTCATTTTCTAACTCGTTATTTAATCTC-AGTCGTTTTCATTTTCTAAC-CGATGGTTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTC-ATGTTTTA
* *
3343394 ATCTTAG
64 ATCCTGG
** * * * * * * * * *
3343401 TTGTTTTCATTTTCTGACCCATGGTTTAATCCTGGTCGTTTTCATTTTTTGACTCATGATTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
*
3343466 CCTAG
66 CCTGG
** * * * * ** * ** * * * *
3343471 TTGTTTTTATTTTCTGACTCATTATTTAATGTCGGTTGTTTTTATTTTTTGACTCATGATTTAAC
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
* *
3343536 CCCGA
66 CCTGG
** * * * * * * * *
3343541 TCATTTTCATTTCCTGACTCATGTTTTGATTCTGGTCATTATT-ATTTCTCCGACTCATGGTTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATT-TTCATTT-TCTGACTCATGTTTTA
3343605 ATCCCT-G
64 AT-CCTGG
* ** * * * * * * *
3343612 TTATCATCATTTTTTGACCCATGGTTTAATCTCGATCGTTTTTCATTTTCTGACTCATGGTTTCA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATC-ATTTTCATTTTCTGACTCATGTTTTAA
*
3343677 T-CTCAG
65 TCCT-GG
* * * * * * * * * *
3343683 TCATTTTCATTCTCTAACTCATGGTTTAATCTTC-ATCGTTTTAATTTTCTGACTCGTGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATC-CCGATCATTTTCATTTTCTGACTCATGTTTTAA
3343747 TCCTGG
65 TCCTGG
* * * * * *** * * * ** *
3343753 TCTTTTTCAATTTTAGGCTCATGATTTAATTTGGGTCATTTTTATTTTCTAACTTGTGATTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
* *
3343818 -TTCAG
66 CCT-GG
* * * * * * * *
3343823 TCATTTTCAATTCTTGACTAGT-AGTTTAATCCTGGTCATTTTCATTTTCTAACTCATGATTTGA
1 TCATTTTCATTTTTTGACTCGTGA-TTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3343887 TTCTGG
65 TCCTGG
** ** * * **
3343893 TCATTTTTGTTTCTTTGACTCGTGATTTAATGTCGGTCATTTTCATTTTTTGACTCATCATTTAA
1 TCATTTTCATTT-TTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3343958 TTCC-AG
65 -TCCTGG
* * * ** * * * * * * *
3343964 TCGTTTTCATTTTCTAACTCAAGGTTTAATCTTC-TTAATTTTCATTTT-TCAAGTTATAG--TT
1 TCATTTTCATTTTTTGACTCGTGATTTAATC-CCGATCATTTTCATTTTCT-GACTCAT-GTTTT
3344025 ACATCCCT-G
63 A-AT-CCTGG
** * * * * * *
3344034 TTGTTTTATATTTTTTGACTTGTGCTTTAATCCCTATCATTTTCATTTTTTGACACAT-TGTTTA
1 TCATTTT-CATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGT-TTTA
3344098 ATCCT-G
64 ATCCTGG
** * * * * *
3344104 TC-TTTTCTATTTTTTGACTTATGATTTAATTCCTATCATTTTCATTTTTTGACTCATGATATAA
1 TCATTTTC-ATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
* *
3344168 TCTTGA
65 TCCTGG
* * * ** * *
3344174 TCATTTCTCATTTTTTAACTCGTCATTTAATCTCGATCGCTTTCATTTACTGACTGGC-GGTTTT
1 TCATTT-TCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACT--CATGTTTT
*
3344238 CATTTTCCCACTAAAGG
63 -A--AT--C-CT---GG
* * *** * * * * *
3344255 TTCATTCCCAATCGTTTTCATTTTTTGACTCATGCTTTAATTTAGGTCGTTTCCATTTTTTAACT
1 -TC-------A---TTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACT
* * *
3344320 CACGTTTTACTCCCGG
55 CATGTTTTAATCCTGG
** * * * * * * **
3344336 TTGTTTTCATTTTCTGACTCCTAAATTAATTTCAGTAATTTTTATTATCATTTTTCTTTTCTGAC
1 TCATTTTCATTTTTTGACTCGTGATTTAA-TCCCG-----------ATCATTTTCATTTTCTGAC
* * * * *
3344401 TCGTGGTTCAATCTTGA
54 TCATGTTTTAATCCTGG
* ** ** ** *
3344418 TCATTTTCA--TTTTGACTCGTGATTGAATTTCGATCATTTTTGTTTCTCTGACTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTT-TCTGACTCATGTTTTAA
* *
3344481 TACTGA
65 TCCTGG
* * ** * ** * *
3344487 TCGTTTTCATTTTCTT-ACTCGTAATTTAATCTTGGTTGTTTTCATTTTCTAACCCAT-TGTTTA
1 TCATTTTCATTTT-TTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGT-TTTA
**
3344550 ATCCTAAT
64 ATCCT-GG
** * * * * * * ** *
3344558 TGGTTTT-AATTTCTGACCCGT-AGTTTAATCCCAATCGTTTTCATTTTCTAACTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCGTGA-TTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3344621 TCCAGG
65 TCCTGG
* * * * * ** *
3344627 TCGTTTTTATTTTTTGACTCATGGTTTAATCCC-AGTCATTTTTATTTTCTGACTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTTAA
*
3344691 TCCTGA
65 TCCTGG
* * * * * * * *
3344697 TCATTTTCATTTTCTAACTCATGCTTTAATTCTC-ATCCTTTTCACTTTT-TGACTCGTGATTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAA-TCCCGATCATTTTCA-TTTTCTGACTCATGTTTTA
*
3344760 ATTCTGG
64 ATCCTGG
* * * * * ** * * *
3344767 TCATTTTTA-TTTCTGACTTGTGGTTTAGTCCTTAT-TTTCTTCATTTTTTGACTCATGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATT-TTCATTTTCTGACTCATGTTTTAA
***
3344830 TCCCAA
65 TCCTGG
* * * * * *
3344836 TCATTTTTCATTTTCTGACTGGTGGA-TTCATCTC-AGTCATTTTCATTCTCTGACTCATGGTTT
1 TCA-TTTTCATTTTTTGACTCGT-GATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTT
3344899 AATTCCT-G
63 AA-TCCTGG
* * * * * * * *
3344907 TCATTTTAACTTTCTT-ACTCGTGGA-TTAATCTC-AGTCGTTTTTAATTTT-AGACTCGTGATT
1 TCATTTTCA-TTTTTTGACTCGT-GATTTAATCCCGA-TC-ATTTTCATTTTCTGACTCATGTTT
**
3344968 TAATTTTGG
62 TAATCCTGG
* * *** * * * * *
3344977 TCATTTTTATTTTTTGACTTGTGATTTAATTTTGATAATTTTAATTTT-TGCCT-AGTGGTTCAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCA-TGTTTTAA
*
3345040 TCCTAG
65 TCCTGG
* * * * * * * *
3345046 TCATTTTTCATTTTCTGACTCATGATTTAATTCAGGTCACTTTT-ATTTCTTTGACTCGTGATTT
1 TCA-TTTTCATTTTTTGACTCGTGATTTAATCCCGATCA-TTTTCATTT-TCTGACTCATGTTTT
**
3345110 AATGCC-AA
63 AAT-CCTGG
* * * *** * * * *
3345118 TCATTTTCAATTTTTGACTCATCATTTAATTTTGGTCATTTTCATTTGCTGAGTCATGGTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA-
* *
3345183 TTCT-A
65 TCCTGG
* * ** *
3345188 TCATTTTC-TCTTTTTGACTTGTGGTTTAATCCCCG-TTGTTTTGCATTTTCTGACTCATGCTTT
1 TCATTTTCAT-TTTTTGACTCGTGATTTAAT-CCCGATCATTTT-CATTTTCTGACTCATGTTTT
*
3345251 AATCCTTG
63 AATCCTGG
*** * * * * * ** * *
3345259 T-AGTTTTCATTTTCCAACAT-GTTG-TTTTATCCCTATAATTTTTATTTT-TGATTTGTGGTGT
1 TCA-TTTTCATTTTTTGAC-TCG-TGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTT
3345320 AATCC-GG
63 AATCCTGG
* * * * * ** * *
3345327 ATCATTTTTCAATTTCTAACTCATTG-TTTAATCCTGATCGCTTTCATTTTTTGACTCATGCTTT
1 -TCA-TTTTCATTTTTTGACTC-GTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTT
*
3345391 AATCCTTG
63 AATCCTGG
** * * * * * * *
3345399 TGGTTTTCATTTTCTCACTCAG-GGTTTAGTCCC-AGTCATTTTCATTTTCTAACTCGTGCTTTA
1 TCATTTTCATTTTTTGACTC-GTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTTA
* *
3345462 ATTCTAG
64 ATCCTGG
* ** ** * * * * **
3345469 TCGTTTTCATTTTTCAACAGGCGTTTTAAT-CCTAGTCATTTTCATTTTCTAACTCATAATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTTAA
**
3345533 TTTTGG
65 TCCTGG
* * * * * * * *
3345539 TAATTTTCATTATCATTTTCATTTTCTGATTTATGGTTTAATCTCGATCGTTTTCATTTTTTGAT
1 TCATTTTCA-T-T--TTTTGA--CTC-G-----TGATTTAATCCCGATCATTTTCATTTTCTGAC
* * *
3345604 TCATGATTTAAT-TTCGA
54 TCATGTTTTAATCCT-GG
* * * ** * * * *
3345621 TCATTTTTATTTCATTGGCTTATGATTTAATACCGGTCATTTTCATTTTTTGACTCATGATTTAA
1 TCATTTTCATTT-TTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3345686 T-CTCAG
65 TCCT-GG
* * * * *
3345692 TCATTTTCATTTTCTAACCCATTGA--TAATCCCGATCATTTTCATTTTCTGAAC-CATGGTTTA
1 TCATTTTCATTTTTTGACTC-GTGATTTAATCCCGATCATTTTCATTTTCTG-ACTCATGTTTTA
** *
3345754 ATTTTAG
64 ATCCTGG
** ** * * *
3345761 TTGTTTTCATTTTTTGACTCGTGATTTAATCTGGATCGTTTTCATTTTTTGACTCATGGTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA-
**
3345826 TCC-CA
65 TCCTGG
* * * * ** * * *
3345831 TCATTTTTATTTTCTAACTTGTGATTTAATTTCGATCATTTTTATTTTTCTAACT-ATGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCA-TTTTCTGACTCATGTTTTAA
*
3345895 TCCCCATTG
65 T--CC-TGG
* * * * * ** * *
3345904 TC--TTT-GTTTTTTGACTCGTGGTTTAATCCTGATCGTTTTTCATTTTTTGACTGGTGGTTTCA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATC-ATTTTCATTTTCTGACTCATGTTTTAA
* **
3345966 TCTTAA
65 TCCTGG
* * * * * ** * * *
3345972 TCATTTTCATTCTCTAACTCATGGTTTAATCCCCG-TGGTTTTAATTTTCTGACTCGTGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAAT-CCCGATCATTTTCATTTTCTGACTCATGTTTTAA
* *
3346036 TCTTGA
65 TCCTGG
* * *** * * * * *
3346042 TCATTTTCGA-TTTTAGACTCATGATTTAATTTTGGTCAATTTT-AATTTCTAACTCGTGATTAT
1 TCATTTTC-ATTTTTTGACTCGTGATTTAATCCCGATC-ATTTTCATTTTCTGACTCATG-TTTT
** *
3346105 GTTCCT-A
63 AATCCTGG
** * * * * * * * * *
3346112 TTGTTTTC-TTTCTTTTACTAGTGGTCTAATCTCGATCTTTTTCATTTT-TCGACTCGTGATTTG
1 TCATTTTCATTT-TTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCT-GACTCATGTTTTA
**
3346175 ATTTTGG
64 ATCCTGG
* * * * * *
3346182 ACATTTTTATTTCTTTGACTCGTTATTTAATGCTGATCATTTTCATTTTTTGACTCAT-TGTTTA
1 TCATTTTCATTT-TTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGT-TTTA
** *
3346246 ATTTTGA
64 ATCCTGG
* * * * * * ** **
3346253 TCATTTTC-TTTTACTAACTCATGGTTTAATCTCGGTCATTTTCACTTTT-TGACTTGTGGATTA
1 TCATTTTCATTTT-TTGACTCGTGATTTAATCCCGATCATTTTCA-TTTTCTGACTCATGTTTTA
3346316 ATCCCT-G
64 AT-CCTGG
* * *
3346323 TCATTTTTATTTTTTGACTCGTGATTTAATCCC-AGTCATTTTTCATTTTTTGACTCGTCG-TTT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCA-TTTTCATTTTCTGACTCAT-GTTTT
*
3346386 AAT-CTCGA
63 AATCCT-GG
* ** * * ** * * * *
3346394 TCGCTTTT-ATTTTTTGACTCAAGGTTTAA-CCCTAATGGTTTTCATTTTCTCACTAAGGGTTTA
1 TC-ATTTTCATTTTTTGACTCGTGATTTAATCCC-GATCATTTTCATTTTCTGACTCATGTTTTA
* **
3346457 GTACC-AA
64 AT-CCTGG
* * * * * * * * **
3346464 TCGTTTTCATTTTTTGAGTCGTGCTTTAATACCGGTCATTTTTATTTTTTAACTCGCGTTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
*
3346529 CCTAG
66 CCTGG
* * * * ***
3346534 TCATTTTCATTTTCTAACTCATAATTTAATTATGGTAATTTTCATTATTGTTTTCATTTTC-GAA
1 TCATTTTCATTTTTTGACTCGTGATTTAA-TCCCG--A---TC---A---TTTTCATTTTCTG-A
* * *
3346598 GTCATGGTTTAAT-CTCGA
53 CTCATGTTTTAATCCT-GG
* * * * ** * * ** *
3346616 TCGTTTTCATTTTCTAACTCTTGATTTAATTTCAATCATTTTTATTTCTCT-AGCTTGTGATTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTT-TCTGA-CTCATGTTTTA
* *
3346680 AT-GTTG
64 ATCCTGG
* * * * * * * * *
3346686 ACTATTTTCATTTTCTAACTCATGATTTAATCTC-AGTCGTTTTCATTTTCTAACCCATGGTTTA
1 TC-ATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTTA
3346750 ATCCTGG
64 ATCCTGG
** * * * * * * * * *
3346757 TTGTTTTCATTTTCTGACCCATGGTTTAATCCTGGTCGTTTTCATTTTCTAACTCATGATTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
3346822 CCTGG
66 CCTGG
* * * * * * * *
3346827 TCATTTTTATTTTCTGACTCATTG-TTTAAT-GCTAGT-TTTTTTA-TTTCTGACTCATGATTTA
1 TCATTTTCATTTTTTGACTC-GTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTTA
* *
3346888 ATCCCGA
64 ATCCTGG
* * * * ** *** * ** *
3346895 TCGTTTTCATTTTCTAACTCATG-TTTTGTTTTGGTCATTATT-ATTTCTCCAACTCATGATTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATT-TTCATTT-TCTGACTCATGTTTTA
3346958 ATCCCT-G
64 AT-CCTGG
** * * * * *
3346965 TTGTCTTCATTTTTTGAC-CTGTGGTTTAATCCCGATCGTTTTTCATTTTCTGACTCATGGTTTC
1 TCATTTTCATTTTTTGACTC-GTGATTTAATCCCGATC-ATTTTCATTTTCTGACTCATGTTTTA
*
3347029 AT-CTCAG
64 ATCCT-GG
* * * * * * * * *
3347036 TCATTTTCATTCTCTAACTCATGCTTTAATCTTCC--TCGTTTTAATTTTTTGACTCATGGTTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATC--CCGATCATTTTCATTTTCTGACTCATGTTTTA
*
3347099 ATCCTAG
64 ATCCTGG
* * *** * * * * *
3347106 TCATTTTCA-ATTTTAAGCTCGTGATTTAATTTTGGTCATTTTTATTTTTTAACTCATGATTTAA
1 TCATTTTCATTTTTTGA-CTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3347170 TTCC-AG
65 -TCCTGG
* * * * ** * * * * *
3347176 TCATTTTCGTTTCTTGACTAGTGGTTTAATCTTGGTCATTTTCATTTTCTAACTGATGATTTGAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
*
3347241 TCTGG
66 CCTGG
* * *** * * * **
3347246 TCATTTTTATTTCTTTGACTCGTGATATAAT-AATAGTGATTTTCATTTTTTCACTCATAATTTA
1 TCATTTTCATTT-TTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTTA
** **
3347310 ATTATAC
64 ATCCTGG
* * *** * * * * * ** *
3347317 T-AGTTTTCATTTTCTAACTTAAGGTTTAATCTTC-TTCATTTTCCTTTTTTGACTTGTGGTTTA
1 TCA-TTTTCATTTTTTGACTCGTGATTTAATC-CCGATCATTTTCATTTTCTGACTCATGTTTTA
**
3347380 ATCCCCG
64 ATCCTGG
** * * * * * * ** *
3347387 TTTTTTTCATTTTCTGACTCATGGTTTAATCCCAATCATTTTTCATTTTTTGACTGATGGATTCA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCA-TTTTCATTTTCTGACTCATGTTTTAA
3347452 T-CTCGG
65 TCCT-GG
* * * * * * * * **
3347458 TCATTTTCATTCTTTGACTCATGGTTTAATTCCTATCGTTTTAATTTTCTAACTCATGGATTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
3347523 -CTCGG
66 CCT-GG
* * * * * *** * * * *
3347528 TCGTTTTTAATTTTAGACTCATGATTTAATTTTGATCATTTTAAATTTT-TGACTAATGGTTCAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTT-CATTTTCTGACTCATGTTTTAA
***
3347592 TCCCAA
65 TCCTGG
* * * * * * *
3347598 TCATTTTTCATTTTCTGACTCGTGATTTAATTCGGGTCATTTTTATTTCTTTGACTCATGATTTA
1 TCA-TTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTT-TCTGACTCATGTTTTA
*
3347663 ATGTCC--A
64 A--TCCTGG
* * * ** * * *
3347670 TCATTTTCAATTTTTGACTCATCATTTAATTTCGATCATTTTCATTTGCTGAGTCATGGTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
* **
3347735 CTTTA
66 CCTGG
*** * * ** * *
3347740 TCATTTTC-TCTTTTTGACTTAAGGTTTAATCCCTATTGTTTTACATTTTCTTACTCGT-TCTTT
1 TCATTTTCAT-TTTTTGACTCGTGATTTAATCCCGATCATTTT-CATTTTCTGACTCATGT-TTT
3347803 AATCCCT-G
63 AAT-CCTGG
** * * * * * * *
3347811 T-AGTTTTC-TTTTTCCAACACATTG-TTTTATCCCTATCAATTTT-ATTTT-TAACTCGTGATT
1 TCA-TTTTCATTTTT-TGACTC-GTGATTTAATCCCGATC-ATTTTCATTTTCTGACTCATGTTT
*
3347871 TAATCCTAG
62 TAATCCTGG
* * * * **
3347880 TCCTTTCCATTTTTTGACTCGTGGTGTAATCCTAATCATTATTCATTTTCTGACTCAT-TGTTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATT-TTCATTTTCTGACTCATGT-TTTA
*
3347944 ATCCTGA
64 ATCCTGG
* * * * * * * ** * * * *
3347951 CCACTTTCATTTTCTGGCTCATGGTTTAATCCTTG-TGGTTTTCATTTTCTCACTCAGGGTTTAG
1 TCATTTTCATTTTTTGACTCGTGATTTAATCC-CGATCATTTTCATTTTCTGACTCATGTTTTAA
**
3348015 TCCCAG
65 TCCTGG
* * * * * * * * * * *
3348021 TCATTTTCAGTTTCTAACTTGTGCTTTAAT-TCTAGTCGTTTTCATTTT-TCA-ACAGGCATTTT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATG--TTTT
*
3348083 AACCCTGG
63 AATCCTGG
* * * *** * * * *
3348091 TCATTTTCATTTTCTAACTCGTAATTATGGTAATGTTGACCATTTTCATTTTCTAACTCGTGATT
1 TCATTTTCATTTTTTGACTCGTGA-T-T--TAATCCCGATCATTTTCATTTTCTGACTCATGTTT
**
3348156 TAAT-CTCAA
62 TAATCCT-GG
* * * * * * * * *
3348165 TCGTTTTCATTTTCT-AGCCCATGGTTTAATCCTGGTCATTTTCA-TTTCTTAACTCATGATTTA
1 TCATTTTCATTTTTTGA-CTCGTGATTTAATCCCGATCATTTTCATTTTC-TGACTCATGTTTTA
*
3348228 ATCCAGG
64 ATCCTGG
* * * * * ** * * *
3348235 TCGTTTTTATTTTTTGACTCATTG-TTTAATACCGGTTGTTTTTATTTTCTGACTTATGATTTAA
1 TCATTTTCATTTTTTGACTC-GTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
* *
3348299 TCCCGA
65 TCCTGG
* * * * * * * * *
3348305 TCTTTTTTCATTTTTTGACTCATGCTTTTATTCTGGTCATTATT-ATTTCTCTGACTCGTGGTTT
1 TC-ATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATT-TTCATTT-TCTGACTCATGTTTT
3348369 AATCCCT-G
63 AAT-CCTGG
** * * * * * * * * *
3348377 TTGTCTTCATTTTCTAACTCATGATTTAATCTCAATCGTTTTCATTTTCTGACTCATGGTTTCAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
*
3348442 -CTCAG
66 CCT-GG
* * * * * * * * * *
3348447 TCATTTTCATTCTCTAACTCATGGTTTAATCCTCG-TCGTTTTAATTTTTTGACTCGTGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCC-CGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3348511 TCCTAG
65 TCCTGG
* * * ** *** * * * *
3348517 TCATTTTCAATTTTAGGCTTATGATTTAATTTTGGTCATTTTTATTTTCTAACTCATGATTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
3348582 --T--
66 CCTGG
* * * * * * * * * * *
3348583 CCA--ATCA-TCTCTAACTCATGGTTTAATCCTCG-TCGTTTTAATTTTTTGACTCATGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCC-CGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3348644 TCCTAG
65 TCCTGG
* * * ** *** * * * *
3348650 TCATTTTCAATTTTAGGCTTATGATTTAATTTTGGTCATTTTTATTTTCTAACTCATGATTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA-
**
3348715 TCC-AA
65 TCCTGG
* * ** * ** * * * *
3348720 TCATTTTCGTTTCTTGACTAATGGTTTAATCTTGGTCATTTTCATTTTCTAACTCATGATTTGAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
*
3348785 TCTGG
66 CCTGG
* * * * * * * * **
3348790 CCGTTTTTATTTTTTTGACTCATGATTTAATGCCGGTTATTTTCATTTTTTGACTCATCATTTAA
1 TCATTTTCA-TTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3348855 TTCC-AG
65 -TCCTGG
** * * ** * * ** *
3348861 TTGTTTTCATTTTCTAACTCAAGATTTAATCTTC-TTCATTTTCACTTTTC-GACTTGTGGTTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATC-CCGATCATTTTCA-TTTTCTGACTCATGTTTTA
3348924 ATCCCT-G
64 AT-CCTGG
** * * * * * *** *
3348931 TTGTTTTATATTTTTTCTGACTCATGCTTTAATCCCTATCATTTTCATTTT-TTAAAAATTTGTT
1 TCATTTT-CA-TTTTT-TGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGT-TT
3348995 TAATCCCT-G
62 TAAT-CCTGG
** * * * * *
3349004 TCATTTTCTATTTTTTGACTTATGATTTAATTCCTATCATTTTCATTTTTTGACTCATGGTATAA
1 TCATTTTC-ATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
* *
3349069 TCTTGA
65 TCCTGG
* * * * *
3349075 TCATTTTTCATTTTTTAAGTCGTCATTTAATCTCC-ATCACTTTCATTTTCTGACT-AGCGGTTT
1 TCA-TTTTCATTTTTTGACTCGTGATTTAATC-CCGATCATTTTCATTTTCTGACTCA--TGTTT
* * **
3349138 TCAT-TTTC
62 TAATCCTGG
* * ** * * * * * ** * * ** * * *
3349146 TCA--CTAAGGGTTTAGTCCCAATCATTTTCTTTTTCTGACTCCTAACTTAATTTT-T-AGTAAT
1 TCATTTTCA-TTTTTTGACTC-GTGA--TT-TAATCCCGA-T-C-ATTTTCATTTTCTGACTCAT
*
3349207 -TTTT-AT--T-A
58 GTTTTAATCCTGG
* * * * *
3349215 TCATTTTCCTTTTTTGACTAGTGGTTTAATCTCGATCATTTTTATTTTCTGACTC--G---TAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
**
3349275 -C-AA
66 CCTGG
* * *** * **
3349278 TCATTTTTATTTCTCTTG-CTTGTGATTTAATATTGATCATTTTCATTTTCTGACTCGTAATTTA
1 TCATTTTCATTT-T-TTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTA
*
3349342 ATCTTGG
64 ATCCTGG
** * * * * * * * * * * *
3349349 TTGTTTTTATTTTCTAACCCATGGTTTAATCCTGATC-GTTTCATTTTCTAACCCGTAG-TTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCAT-GTTTTAA
***
3349412 TCCCAA
65 TCCTGG
* * * * *
3349418 TCATTTTCATTTTTTCTGACTCGTGATTTAAT-CCAAGTCGTTTTTATTTTTTGACTCATGGTTT
1 TCATTTTCA-TTTTT-TGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTT
*
3349482 AATCCTAG
63 AATCCTGG
* * * * * *
3349490 TCATTTTTATTTTCTGACTTGTGATTTAATCCTGATCATTTTCATTTTCTAACTCATGCTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA-
*
3349555 TCCT-A
65 TCCTGG
* * * * * * * * * ** *
3349560 TCGTTTCCATTTTTTGACTCGTGATTCAATTCTGGTCTTTTTTATTTCTCTAACTTGTGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTT-TCTGACTCATGTTTTAA
***
3349625 TCCCCA
65 TCCTGG
* * * * * * * ** ** *
3349631 T-TTTCTTCATTTTCTGACTCATGGTTTAATCCCAATCATTTTTCATTTTTTGGCTGGTGGATTC
1 TCATT-TTCATTTTTTGACTCGTGATTTAATCCCGATCA-TTTTCATTTTCTGACTCATGTTTTA
3349695 AT-CTAGG
64 ATCCT-GG
* * * * * * * **
3349702 TCATTTTCATTTTATGACTCATGGTTTAATTCCTG-TCATTTTAATTTTCTAACTCGTGGATTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAA-TCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3349766 T-CTCGA
65 TCCT-GG
* * * * * *** * * * ** *
3349772 TCGTTTTTAATTTTAGACTTGTGATTTAATTTTGGTCATTTTTATTTTTTGACTTGTGATTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
* *
3349837 -TTCGA
66 CCT-GG
* * ** * * ** * * *
3349842 TCATTTTAAATTTTTGACTAATGGTTCAATCCTAATCATTTTTCATTTTTTGACTCGTGATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCA-TTTTCATTTTCTGACTCATGTTTTAA
*
3349907 T-TTGGG
65 TCCT-GG
* * *
3349913 TCATTTTTATTTCTTTGACTCGTAATTTAATGCCGATCATTTTCAATTTT-TGACTCATCG-TTT
1 TCATTTTCATTT-TTTGACTCGTGATTTAATCCCGATCATTTTC-ATTTTCTGACTCAT-GTTTT
* *
3349976 AAT-TTCGA
63 AATCCT-GG
* * * * * * * ** *
3349984 TCATTTTCATTTGTTGAGTCATGGTTTAATCTCTATCATTTTC-TCTTTTTGACTTGTGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCAT-TTTCTGACTCATGTTTTAA
**
3350048 TCCCCG
65 TCCTGG
** * ** * * ** * *
3350054 TTGTTTTACATTTTTTGACTTGTTCTTTAAT-CC-ATGTAGTTTTCTTTTTCCAACACGT-TGTT
1 TCATTTT-CATTTTTTGACTCGTGATTTAATCCCGAT-CA-TTTTCATTTTCTGACTCATGT-TT
* *
3350116 TAATATCT-A
62 TAAT-CCTGG
* * * * * * * * *
3350125 TCAATTTT-A-TTTTTAACTCTTGATTTAAT-CCTAGTCGTTTCCATCTTT-TTACTCGTGGTGT
1 TC-ATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCAT-TTTCTGACTCATGTTTT
*
3350186 AATCCTGA
63 AATCCTGG
* * * ** *
3350194 TCATTATTCATTTTCTGACTCATTG-TTTAATCCTGATCGCTTTCATTTTCTGACTCATGGTTTA
1 TCATT-TTCATTTTTTGACTC-GTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTA
* *
3350258 ATTCTTG
64 ATCCTGG
** * * * * * * * *
3350265 TGGTTTTCATTTTCTCACTCAG-GGTTTAGTCTC-AGTCATTTTCATTTTCTAACCCATGCTTTA
1 TCATTTTCATTTTTTGACTC-GTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTTA
* *
3350328 ATTCTAG
64 ATCCTGG
** ** * * * * *
3350335 TCATTTTCATTTTTCAACAGGCGTTTTAA-CCCTGGTCATTTTCTTTTTCTAACTCGTAAT-TTT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCC-GATCATTTTCATTTTCTGACTC---ATGTTT
** *
3350398 GGTAATGTTGA
62 --TAATCCTGG
* * * * * * * * * * *
3350409 CCGTTTTCATTTTCTAACTCATGATTTAATCTCAATCGTTTTCATTTTCTAACCCATGGTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
3350474 CCTGG
66 CCTGG
** * * * * * * * ** *
3350479 TTGTTTTCATTTTTTGACCCATGGTTTAATCCTGGTCGTTTTCATTTTCTAACTTGTGATTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
3350544 CCTGG
66 CCTGG
* * ** *** * * * * *
3350549 TCGTTTTTATTTTCGGAC-C---ATTTAATGTAGATTATTTTTATTTTTTGAGTCATGATTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
*
3350610 -CTCGA
66 CCT-GG
* * * * * * * *
3350615 TCATTTTCATTTTCTGACTCATGTTTTGAT-TCTAGTCATTATT-ATTTCTCGGACTCATGGTTT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATT-TTCATTT-TCTGACTCATGTTTT
*
3350678 AATCCTTG
63 AATCCTGG
** * * * * * *
3350686 TTGTCTTCATTTTCTGACTCGTGGTTTAATCTCGATCATTTTTCATTTTCTG----A-GGTTTAC
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCA-TTTTCATTTTCTGACTCATGTTTTAA
*
3350746 T-CTCGA
65 TCCT-GG
* * * * * * * * * *
3350752 TCATTTTTTATTTTCTAACTTGTGGTTTCATCTC-AGTCATTTTCATTCTCTGACTTATGGTTTA
1 TCA-TTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTTA
*
3350816 ATCCTTG
64 ATCCTGG
* * * * * * **
3350823 TCGTTTTAATTTTTTGACTCGTGGTTTAAT-CCTAGTCATTTTCAATTTT-AGGCTCATGACTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTC-ATTTTCTGACTCATGTTTTA
**
3350886 ATTTTGG
64 ATCCTGG
* * * * * * * * * *
3350893 TCATTTTTATTTTCTAACTTGTGATTTAATTCCAATCATTTTC-GTTTCTTGACTAAAGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTC-TGACTCATGTTTTAA
3350957 TCCTGG
65 TCCTGG
* * * * * * * ** * * *
3350963 TCATTTTCATTTTCTAACTCATGATTTGATTCTGGTTGTTTTTATTTCTTTGACTCGAT-ATTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTT-TCTGACTC-ATGTTTTA
*
3351027 ATGCC-AG
64 AT-CCTGG
* * * * * * * *
3351034 TCATTTTCATTTTTTGACTCATCATTTAATTCC-AGTCGTTTTCATTTTCTAACTCAAGGTTTCA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTTAA
* **
3351098 TCTTTT
65 TCCTGG
* * * ** * * ** * * * * *
3351104 TC-GTTTCACTTTTCGACTTATGGTTTAATCCCTATTGTTTTATATTTTTTTGACCCGTGCTTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTT-CA-TTTTCTGACTCATGTTTTA
*
3351168 ATCCCT-A
64 AT-CCTGG
** * * *
3351175 TCATTTTCATTTTTTGACGTTTTG-TTTAATCCCTG-TCATTTTCTATTTTTTGACTTATGATTT
1 TCATTTTCATTTTTTGAC-TCGTGATTTAATCCC-GATCATTTTC-ATTTTCTGACTCATGTTTT
*
3351238 AATTCCT-A
63 AA-TCCTGG
* * ** * * * * **
3351246 TCATTTTCATTTTTTGACTCGTGGTATAATCTTGCTCATTTTTCATTTTTTAACTCGTCATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCA-TTTTCATTTTCTGACTCATGTTTTAA
*
3351311 T-CTCGA
65 TCCT-GG
** * * * ** * * *** * ** **
3351317 TCGCTTTCATTTTCTGACCAACAGTTTTCATTTTCTCACTAAGGTTTT-AGTCCCAATCGTTTTC
1 TCATTTTCATTTTTTGA-C-TC-G---TGATTTAATCCCGATCATTTTCATTTTC--T-G-ACTC
* * *
3351381 ATTTTTTGA--CTTG
56 ATGTTTTAATCCTGG
* * * ** * ** * * *
3351394 TGC--TTTAATTTAGGTCGTTTCCATTTTTTAA-CTCG--CATTTT-ACTCTC-GA-TCAT-TTT
1 T-CATTTTCATTT--TTTGACT-CGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTT
* * *
3351450 CATTTTCT-G
62 TA-ATCCTGG
* * * * * * * * *
3351459 --ATTCCTAATTTAATTT---TAGTAATTTTTAT---TATCATTTTCCTTTTCTGACTCAAGGTT
1 TCATT-TTCATTT--TTTGACTCGTGA-TTTAATCCCGATCATTTTCATTTTCTGACTCATGTTT
** *
3351516 TAATCAAGA
62 TAATCCTGG
* * * * * * ** *
3351525 TCATTTTTATTTTTCGACTCGTGATTGAA-CTTCGATAATTTTTATTTCTCT-AGCTTGTGATTT
1 TCATTTTCATTTTTTGACTCGTGATTTAATC-CCGATCATTTTCATTT-TCTGA-CTCATGTTTT
* *
3351588 AATACTGA
63 AATCCTGG
* * * ** * ** * * *
3351596 TCGTTTTCATTTTTTGACTCATAATTTAATCTTGGTTGTTTTCATTTTCTAACCCATGGTTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
*
3351661 CCTGA
66 CCTGG
* * * * * *
3351666 TCA-TTTCATTTTCTGACTCGT-AGTTTAATACCAATCGTTTTCATTTTCTGACTCGTGATTTAA
1 TCATTTTCATTTTTTGACTCGTGA-TTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
**
3351729 TCCAAG
65 TCCTGG
* * ** ** ** *
3351735 TCATTTTTATTTTTTGACTCATGGCTTAATCCCTG-TCATTTTTGTTTTCTGACTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCC-GATCATTTTCATTTTCTGACTCATGTTTTAA
*
3351799 TCCTGA
65 TCCTGG
* * * * * * * ** *
3351805 TCATTTTCATTTTCTAACTCATGATTTAATTCCC-ACCATTTCCATTTTTTGATTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAA-TCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
* *
3351869 TTCTAG
65 TCCTGG
* * * * * * * *
3351875 TCTTTTTTATTTCTCTGACTTGTGGTTTAATCCCCATTC-TCTTCACTTTCTGACTCAT-TGTTT
1 TCATTTTCATTT-TTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGT-TTT
**
3351938 AATCCTAA
63 AATCCTGG
* * * * * * *
3351946 TCATTTTTCATTTTCTGACTGGTGGA-TTCATCTCGATCATTTTCATTCTCAGACTCATGGTTTA
1 TCA-TTTTCATTTTTTGACTCGT-GATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTA
*
3352010 ATTCCT-A
64 A-TCCTGG
* * * * ** * * * * * *
3352017 TCGTTTTAATTTTCTAACTCGTGCA-TTAATCTTGGTCGTTTTTAATTTT-AGACTCGTGATTTA
1 TCATTTTCATTTTTTGACTCGTG-ATTTAATCCCGATC-ATTTTCATTTTCTGACTCATGTTTTA
**
3352080 ATTTTGG
64 ATCCTGG
* * * * *** * * * *
3352087 TCATTTTTATTTTCTCACTTC-TAATTTAATTTTGATCATTTTAAATTTT-TGACTAATGGTTCA
1 TCATTTTCATTTTTTGAC-TCGTGATTTAATCCCGATCATTTT-CATTTTCTGACTCATGTTTTA
***
3352150 ATCCCAA
64 ATCCTGG
* * * * * * * * * *
3352157 TCATTTTTCATTTTCTGACTCATGATTTAATTCGGGTCATTTTTATTTCTTTGACTCGTGATTTG
1 TCA-TTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTT-TCTGACTCATGTTTTA
*
3352222 ATGCC-GA
64 AT-CCTGG
* * * *** * * *
3352229 TCATTTTCAATTTTTGACTCATCG-TTGAATTTTGATCATTTTCATTTGCTGAGTCATGGTTTAA
1 TCATTTTCATTTTTTGACTCGT-GATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3352293 TCTCT-A
65 TC-CTGG
* * ** * * * *
3352299 TCATTTTC-TCTTTTTGACTTGTGGTTTAATCCCTG-TTGTTTAACATTTTCTAACTCGTGCTTT
1 TCATTTTCAT-TTTTTGACTCGTGATTTAATCCC-GATCATTT-TCATTTTCTGACTCATGTTTT
*
3352362 AATCCCT-A
63 AAT-CCTGG
** * * * * * *
3352370 T-AGTTTTC-TTTTTCCAACAT-GTTGTTTTAA-CCCTATCAATTTT-ATTTTTTAACTCGTGAT
1 TCA-TTTTCATTTTT-TGAC-TCG-TGATTTAATCCCGATC-ATTTTCATTTTCTGACTCATGTT
*
3352430 TTAATCCTAG
61 TTAATCCTGG
* * * * * *
3352440 TCCTTTCCATTTTTTGACTCGTGGTGTAATCCTGATCATTATTCATTTTCTAACTCAT-TGTTTA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATT-TTCATTTTCTGACTCATGT-TTTA
***
3352504 ATCCCAA
64 ATCCTGG
* ** * * * * * ** * * * *
3352511 CCGCTTTCATTTTCTAACTCATGGTTTAATCCTTG-TGGTTTTCATTTTCTCACTCAGGGTTTAG
1 TCATTTTCATTTTTTGACTCGTGATTTAATCC-CGATCATTTTCATTTTCTGACTCATGTTTTAA
**
3352575 TCCCAG
65 TCCTGG
* * * * * * * * *
3352581 TCATTTTCATTTTCTAACTTGCGATTTAATCTC-AGTCGTTTTCATTTTCTAACCCATGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATTTTCATTTTCTGACTCATGTTTTAA
3352645 TCCTGG
65 TCCTGG
** * * * ** * * *
3352651 TTGTTTTCATTTTCTGA-TCCATGGTTTAATCTTGGTCATTTTCATTTTCTGACTCGTGATTTAA
1 TCATTTTCATTTTTTGACT-CGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
*
3352715 TCCTAG
65 TCCTGG
* * * * * ** * *
3352721 TCATTTTTATTTTCTGACTCATTG-TTTAATGCCGGTTGTTTTTATTTTCTGACTCATGATTTAA
1 TCATTTTCATTTTTTGACTC-GTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAA
* *
3352785 TCCCGA
65 TCCTGG
* ** * * * * *
3352791 TCATTTTCATTTTTTGACTCATTTTTTGAT-TCTAGTCATTATT-ATTTCTCTGACTCGTGGTTT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGA-TCATT-TTCATTT-TCTGACTCATGTTTT
*
3352854 AATCCTTG
63 AATCCTGG
** * * * * * * *
3352862 TTGTCTTCATTTTTTGACTCGTGGTTTAATCTCGATCATTTTTCATTTTCTGACCCGTGGTTTCA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCA-TTTTCATTTTCTGACTCATGTTTTAA
**
3352927 T-CTCAC
65 TCCT-GG
* * * * * * * * * *
3352933 TCATTTTCATTCTCTGACTCATGGTTTAATCATC-ATCGTTTTAATTTTTTGACTCGTGGTTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATC-CCGATCATTTTCATTTTCTGACTCATGTTTTAA
3352997 TCCTGG
65 TCCTGG
* * * * * *** * * * * *
3353003 TAATTTTTAATTTTTGGCTTGTGATTTAATTTTGGTCATTTTTATTTTCTAACTCGTGATTTAAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
* **
3353068 TCTAA
66 CCTGG
* ** * * * * * * *
3353073 TCATTTTCATTTCTTGACTAATGGTTTAATCCTGGTTATTTTCATTTTCTAACTCATGATTTGAT
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
* *
3353138 TCTAG
66 CCTGG
* * * * *
3353143 TCGTTTTTATTTCTTTGACTCGTGATTTAATGCCGGTCATTTTCATTTTTTGACTCAT
1 TCATTTTCATTT-TTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCAT
3353201 CATTTAATTT
Statistics
Matches: 9397, Mismatches: 2778, Indels: 1539
0.69 0.20 0.11
Matches are distributed among these distances:
61 2 0.00
62 13 0.00
63 63 0.01
64 47 0.01
65 26 0.00
66 78 0.01
67 49 0.01
68 123 0.01
69 797 0.08
70 4383 0.47
71 2734 0.29
72 436 0.05
73 81 0.01
74 94 0.01
75 15 0.00
76 30 0.00
77 17 0.00
78 12 0.00
79 21 0.00
80 24 0.00
81 67 0.01
82 185 0.02
83 11 0.00
84 10 0.00
85 1 0.00
86 3 0.00
87 2 0.00
89 14 0.00
90 20 0.00
91 36 0.00
92 3 0.00
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.51
Consensus pattern (70 bp):
TCATTTTCATTTTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACTCATGTTTTAAT
CCTGG
Found at i:3340392 original size:71 final size:70
Alignment explanation
Indices: 3340153--3340429 Score: 222
Period size: 71 Copynumber: 3.9 Consensus size: 70
3340143 TTTCAACATT
* * ** * * * *
3340153 GTTTTCGTTTT-TGAACTCATGGTTTAATATCGATCATTTTCATTTTTTGACTCTTGATTTAATC
1 GTTTTCATTTTCTG-ACTCATGTTTTAATCCCGATCTTTTTCATTTTCTGACTCGTGGTTTAATC
*
3340217 CCAATC
65 CCGATC
* * * * * * *
3340223 ATTTTCATTTTCTGACTCATGTTTTGATTCTGGTCATTATT-ATTTCTCCGACTCGTGGTTTAAT
1 GTTTTCATTTTCTGACTCATGTTTTAATCCCGATC-TTTTTCATTT-TCTGACTCGTGGTTTAAT
*
3340287 CCCTG-TT
64 CCC-GATC
* * * * *
3340294 GTTTTTATTTTCTGACCCGTAG-TTTAATCCCGATCGTTTTTCATTTTTTGACCCGTGGTTTAAT
1 GTTTTCATTTTCTGACTCAT-GTTTTAATCCCGATC-TTTTTCATTTTCTGACTCGTGGTTTAAT
3340358 CCCGATC
64 CCCGATC
* * * *
3340365 GTTTTCATTCTCTGACTCATGTTTTAATCCTC-ATCCTTTTAATTTTCTGACTCATGGTTTAATC
1 GTTTTCATTTTCTGACTCATGTTTTAATCC-CGATCTTTTTCATTTTCTGACTCGTGGTTTAATC
3340429 C
65 C
3340430 TGGTCATTTT
Statistics
Matches: 159, Mismatches: 39, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
70 55 0.35
71 98 0.62
72 6 0.04
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.49
Consensus pattern (70 bp):
GTTTTCATTTTCTGACTCATGTTTTAATCCCGATCTTTTTCATTTTCTGACTCGTGGTTTAATCC
CGATC
Found at i:3341229 original size:35 final size:35
Alignment explanation
Indices: 3341025--3343050 Score: 332
Period size: 35 Copynumber: 57.4 Consensus size: 35
3341015 AATTTTTATT
* *
3341025 ATCATTTTCCTTTTCTGAC-CGTGATTTAATCTCG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * ** *
3341059 CTCATTTTCATTTTTTGACTCATGATTGAATTTCA
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * * * *
3341094 ATCATTTTTATTTCTTTGGCTTGTGAATTAATACTG
1 ATCATTTTCATTT-TCTGACTCGTGATTTAATCCCG
* * * * * ***
3341130 ATCGTTTTTATTTTCTAACTCATAATTTAATTTTG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* ** * * * *
3341165 GTTGTTTTCATTTTCTAACCCGTGGTTTAACCCCG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * **
3341200 ATCGTTTTCATTCTCTGACTCATGATTTAATCTAG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * **
3341235 GTCATTTTTATTTTTTGACTCGTGGTTTAATCCTA
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
** * * *
3341270 ATTTTTTTTATTTTCTGACTTGTGATTTAATCCTG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * *
3341305 ATCATTTTCATTTTCTAACTCATGCTTTAATTCCC-
1 ATCATTTTCATTTTCTGACTCGTGATTTAA-TCCCG
* * *
3341340 ATCGTTTTCATTTTCTGACTCGTGATTTAATTCTG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * ** *
3341375 GTTATTTTTATTTT-TGACTTATGGTTTAATCCTCG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCC-CG
* * * * ** *
3341410 -T-TTTCTTCATATTCTGACTCATGGTTTAATTTCA
1 ATCATT-TTCATTTTCTGACTCGTGATTTAATCCCG
* * * *
3341444 ATCATTTTTCATTTTTTGACTGGTGGA-TTCATCTCG
1 ATCA-TTTTCATTTTCTGACTCGT-GATTTAATCCCG
* * * *
3341480 ATCATTTTCATTCTCTGACTCATGGTTTAATTCCTG
1 ATCATTTTCATTTTCTGACTCGTGATTTAA-TCCCG
* * * * *
3341516 -TCGTTTTAATTTTCTAACTTGTGGA-TTAATCTCG
1 ATCATTTTCATTTTCTGACTCGT-GATTTAATCCCG
* * * ***
3341550 ATCACTTTTAAATTT-AGACTCGTGATTTAATTTGG
1 ATCA-TTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * **
3341585 GTCATTTTTATTTTCTGACTTGTTATTTAATTTCG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * *
3341620 ATCATTTTAATTTTTTGACTAGTGGTTTAATCCCA
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * *
3341655 ATCATTTTTATTTCTTTGACTCATGATTTAATGCCG
1 ATCATTTTCATTT-TCTGACTCGTGATTTAATCCCG
* * *
3341691 ATCATTTTCAAATTT-TGACTCATCG-TTTAATTCCG
1 ATCATTTTC-ATTTTCTGACTCGT-GATTTAATCCCG
* * * * * *
3341726 ATCATTTTCATTTGCTGAGTCATGGTTTAATCTCT
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * *
3341761 ATCATTTTC-TCTTTTTAACTTG-GGTTTAATCCCCG
1 ATCATTTTCAT-TTTCTGACTCGTGATTTAAT-CCCG
** * *
3341796 -TTGTTTTACATTTTTTGACTCGTGCTTTAATCCCTG
1 ATCATTTT-CATTTTCTGACTCGTGATTTAATCCC-G
* * * ***
3341832 -T-AGTTTTCATTTTC-CAGCACGTTG-TTTTATCTTT
1 ATCA-TTTTCATTTTCTGA-CTCG-TGATTTAATCCCG
* * * * *
3341866 ATCTTTTTTATTTT-TAACTCGTGATTCAAT-CCT
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * * * * *
3341899 AGTCGTTTCCTTTTTTTGACTCAT-AGTGTAGTCCTG
1 A-TCATTTTCATTTTCTGACTCGTGA-TTTAATCCCG
* * * *
3341935 ATCATTTTTCATTTTTTGACTCATGGTTTAATCCTTG
1 ATCA-TTTTCATTTTCTGACTCGTGATTTAATCC-CG
** * * * * *
3341972 -TGGTTTTCATTTTCTCACTCATGGTTTAGTCCCA
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * *
3342006 ATCATTTTCATTTTCTAACTCATGCTTTAAT-TCT
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
** * ** * *
3342040 AGTTGTTTTCATTTT-TCAACAAGCG-TTTAAT-CCT
1 A-TCATTTTCATTTTCT-GACTCGTGATTTAATCCCG
* * ***
3342074 AGTCATTTTCATTTTCTAACTCGTAATTTAATTTTG
1 A-TCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * ** * ** * ***
3342110 GTAATTTTCATTATCAT-TTTCATTTTTTGATTTGTGG
1 ATCATTTTCATTTTC-TGACTCGTGATTT-A-ATCCCG
* * * * * * * **
3342147 TTTAATCTTGATTGTTTTGA-T--T-TTCTTACTCATG
1 -ATCATTTTCATT-TTCTGACTCGTGAT-TTAATCCCG
* * * * * *
3342181 ATTTAATTTCAATCATTTTTATTTTAGTGGCTTGTGATTTAATACCA
1 A--TCATTT---TCA--T----TTT-CTGACTCGTGATTTAATCCCG
* *
3342228 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * *
3342263 ATCATTTTCATTTTCTAACCCATG-GTTAATCCCA
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * **
3342297 ATCATTTTCATTTTTTGAAC-CATGGTTTAATTTCG
1 ATCATTTTCATTTTCTG-ACTCGTGATTTAATCCCG
* * * * *
3342332 ATTATTTTCATTTTTTGACTTGTGGTTTAATCTCG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * *
3342367 ATCATTTTCATTTTTTGACTTGTGGTTTAATTCC-
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * ***
3342401 ACCATTTTTATTTTCTAACTTGTGATTTAATTTGG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * *
3342436 GTCATTTTTATATTTTCTGACTTGTGGTTTAATCCCA
1 ATCA-TTTT-CATTTTCTGACTCGTGATTTAATCCCG
** * * *
3342473 ATTGTCTTCATTTTCTGACTCGTGGTTTAA-CCTG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * *
3342507 ATCATTTTTCCTTTTCT-AGCTGGTGGTTTCATCTC-
1 ATCA-TTTTCATTTTCTGA-CTCGTGATTTAATCCCG
* * * * *
3342542 AGTCATTTTCACTCTCTAACTCGTGCTTTAATCCCT
1 A-TCATTTTCATTTTCTGACTCGTGATTTAATCCCG
** * * **
3342578 ATGGTTTTAATTTTCTGACTCGTGGTTTAATCTTG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* ** ***
3342613 ATCATTTTCAGTTTT-AGACTTATGATTTAATTTTG
1 ATCATTTTCA-TTTTCTGACTCGTGATTTAATCCCG
* * * * *
3342648 GTCAATTTT-ATTTTCTAACTCGTGATTTAGTTCTG
1 ATC-ATTTTCATTTTCTGACTCGTGATTTAATCCCG
* ** * * * *** * *
3342683 GTTGTTTTCATTTTTTAACTAGTGGCCTGATCTCG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * ***
3342718 ATCTTTTTCTTTTTTTGACTCGTGATTTGATTTTG
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* * * * * * *
3342753 GTTATTTTTATTTCTTTGAC-CTGTTATTTAATGCTG
1 ATCATTTTCATTT-TCTGACTC-GTGATTTAATCCCG
* * ***
3342789 ATCATTTTCATTTTTTGACTCATTG-TTTAATTTTG
1 ATCATTTTCATTTTCTGACTC-GTGATTTAATCCCG
* * **
3342824 ATCATTTTC-TTTTGCTGACTCATGGTTTAATGTCG
1 ATCATTTTCATTTT-CTGACTCGTGATTTAATCCCG
* * * *
3342859 GTCATTTTCACTTTT-TGACTTGTGGTTTAATCCCCT
1 ATCATTTTCA-TTTTCTGACTCGTGATTTAAT-CCCG
** * * * *
3342895 ATTGTTTTACATTTTTTGACTCATGCTTTAATCCCT
1 ATCATTTT-CATTTTCTGACTCGTGATTTAATCCCG
* * * *
3342931 ATCATTTTTATTTTTTGA-TGCATTG-TTTAATCCCT
1 ATCATTTTCATTTTCTGACT-C-GTGATTTAATCCCG
* * *
3342966 TTCATTTTTATTTTTTGACTCGTGATTTAATCCC-
1 ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
* *
3343000 AGTCATTTTTCATATTT-TTACTCGTCG-TTTAATCTCG
1 A-TCA-TTTTCAT-TTTCTGACTCGT-GATTTAATCCCG
* *
3343037 ATCGTTTTTATTTT
1 ATCATTTTCATTTT
3343051 TTAACTCATG
Statistics
Matches: 1460, Mismatches: 425, Indels: 214
0.70 0.20 0.10
Matches are distributed among these distances:
33 6 0.00
34 200 0.14
35 923 0.63
36 237 0.16
37 57 0.04
38 13 0.01
39 1 0.00
40 2 0.00
42 3 0.00
43 2 0.00
44 3 0.00
45 6 0.00
47 6 0.00
48 1 0.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (35 bp):
ATCATTTTCATTTTCTGACTCGTGATTTAATCCCG
Done.