Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 3 of 93
Found at i:326367 original size:900 final size:888
Alignment explanation
Indices: 322227--326639 Score: 5275
Period size: 900 Copynumber: 4.9 Consensus size: 888
322217 CTCTGGTGAT
* * *
322227 GGTGCCCCGAGCGAAAAAAAATAG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAA
1 GGTGCCCCGGGCGAAAAAAAAT-GCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAA
*
322291 CCCTCGATCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
65 CCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
* * * *
322356 GTATCCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGACCAGAGGGGCAGGATGCA
130 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGC-
* * * * * * * * **
322421 G-AA-CTTGGGGATCGATCGGGTCCCCCACTGCATGTTATCGATCCTACTACTGCAACCCTCAGT
194 GCAAGC-CGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCACAACCCTCAGT
** *
322484 TTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGACGAAACGAGCGGGCG
258 TTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---CG
* * ** *
322549 GGCAGGCACTACGTCGACCAGAGAGGCAAGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGG
320 GGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
** * *
322614 GTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATTTTTATGGCTTGTAAATTAATACGA
385 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
322679 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
450 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTT
*
322744 TTAAAACTTTTTACGGTTC-AGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
515 TTAAAACTTTTTACGGTTCGA-GA-TTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACT
* * * * * *
322808 TGGTAGATGGGATCCTTGTATTTTTTTTTGCAAGCACAAAAAAATTCACCTAAAAACTCGAAGTG
578 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
322873 TACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAAATACTTTAATGGCTGCTGGCAG
643 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
322938 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
708 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT-AGTTCTCGAGGTTTGATGAGGGATAG
* * *
323003 GGGGCCAATATAAGGGCCAAGTACTAGCACCCATCTCACATCATGTGCGCACA---CCCCCCGCC
772 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCGTC
*
323065 CCCCCAATCGCCAGAACCCCTAATGCCGCCGGTCAGGTTCT-C--CAATGAT
837 CCCCCAATCGCCAGAACCCCTAATGCCGCCGGTCAGGTTCTCCGGCAATGAG
* * * *
323114 GGTGCCCCGGGCGACAAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTGCACCCACAAC
1 GGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAAC
*
323179 CCTCGGTCTGGT-TCGATCTTACACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCC
66 CCTCGGTCTGGTCT-GATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
* * * *
323243 GTATGCCTAAGTCAACCTACAAAACAAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCT-GGATGC
130 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-TAGGATGC
* * ** * **
323307 ACAAGCCGAGGATCGGTCGGGTCCCCCTCT--ATGAGCTACCAATCTTGCTGCCACAACTATCAG
194 GCAAGCCGGGGATCGACCGGGTCCCCCTCTGCAT--GCTACCGATCTTGCTGCCACAACCCTCAG
** **
323370 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC
257 TTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---C
* *
323435 GGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
319 GGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
323500 GGTTTAGGCACATCTTCATATTTCTACTGTGCCAATGACATTTTTATGGCTTGTAAATTCATACA
384 GGTTTAGGCACATCTTCATA-TT-T-C--TGCC-ATG-C----------C-----AATGC---CA
*
323565 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGAT
424 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAT
*
323630 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT----TT---G-----------------
489 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * *
323671 -A-AAGGAGTTTTGGCACCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
554 CAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
323734 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
619 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
323799 AGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
684 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT-AG
* *
323864 TTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACAT
748 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * *
323929 TATGTGCACACACACCCCTCCCGGCCCCCCAATCGCCAGAACCCCCAATGTCGCCAGTTAGGTTC
813 CATGTGCGCACAC-CCCCCCCCGTCCCCCCAATCGCCAGAACCCCTAATGCCGCCGGTCAGGTTC
** *
323994 TCCGACGATGCTTCGGTGAT
877 T-C--CG--G---CAATGAG
* * * * * *
324014 GGTGCCTCGGGCGAAAAAAAATGTGGCACCAGCACATGCCAGAGCCCAACATGTGCACCCACAAG
1 GGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAAC
* * * *
324079 CCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCATATGCTTAGTCTGGGAATGAACACCG
66 CCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
* * *
324144 TATGCCTAAGTCAACCCACGAAACCAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTAGGATGCGT
131 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGC
* * * * ** * ** *
324209 AAGCTGGGGAT-AAGCTGGGTCCCCCCCTGTGTGCTACTGATCTTGCTATCACAACCCTCAGTCT
196 AAGCCGGGGATCGA-CCGGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCACAACCCTCAGTTT
*
324273 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG-CGGGCAG
260 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCGGGCA-
* *
324337 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
324 ---GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * ***
324402 TTTACGCACATCTTCATATTTTTGTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
386 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
324467 GGTCGCTTAAGCCTTCATGTGATGTTTCATGGCAAGACT-ACTCGTTTTTTATTTTTCATGATTT
451 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA-TGACTCGTTTTCTATTTTTCATGATTT
* * *
324531 TCAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGATTCTTGGCCCCAAACAT
515 TTAAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTT
* * *
324596 GGTAGACATGATCCTTGTATTTTTGTTGGTATGCACAAAACAATTCAGCTAAAAACTCGAAGTGT
579 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
324661 ACAGGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGC
644 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
324726 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
709 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT-AGTTCTCGAGGTTTGATGAGGGATAGG
* **
324791 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGCC-T-C
773 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCGTCC
* * * * * * *
324854 CACCAATCGTCGGAACCCCTAATACCACCGGTCAGGTTCTCTGGC---GAT
838 CCCCAATCGCCAGAACCCCTAATGCCGCCGGTCAGGTTCTCCGGCAATGAG
* * * *
324902 GGTGCCCCGGGCGAAAAAAAATACGACACCAACACATGCCTGAG-CCAGCATGTGCACCCGTAAC
1 GGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAAC
* * * * * * *
324966 CCTCGGTCCGATCTGATCTTACACTAGAAATTAACTCCATATGCATAGACTGGGAATGAACTCCA
66 CCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
* * * * *
325031 TATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCGC
131 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGC
* * * * * * *
325096 AAGTCGGGGAACGACTGGGTCCCCCTCTGCATGCTGCCGATCCTGTTGCCACAACCCTCAGTTCG
196 AAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCACAACCCTCAGTTTG
* ** * *
325161 GTCTGATCTTAGACTGGGAATGAACTCCGTAT-CCTTAAGCTAACTAACGAAATGAG-AGATAGG
261 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCC-TAAGCCAACCGACGAAACGAGCCG---GG
* * * *
325224 CAGGCACTATGCCGACCAGAGAGGCGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGT
322 CAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
325289 TTAGGCACATCTTCATATTTTTACCCTGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATG
387 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
325354 ATCCCTTAAGCCTT-AGTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
452 GTCCCTTAAGCCTTCA-TGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTT
* * *
325418 TGAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTG
516 TAAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTG
* ** * *
325483 GTAGACATGATCCTTGTATTTTTGTTGGTGTGTACAAAAAAATTCAGCTAAAAAATCGAAGTGTA
580 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
325548 CATGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACTGGCAACA
645 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
325613 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT-GTTCTCAAGGTTTGAAGAGGGATAGGGG
710 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
325677 GCCAACATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCTCCCCCCGTCC
775 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCCCCGTCC
* *
325742 CCCCAATCGCC-GAAAACCCTAATGCCGCTGGTCAGGTTCTCCGGCAATGCTCAG
838 CCCCAATCGCCAG-AACCCCTAATGCCGCCGGTCAGGTTCTCCGGCAATG---AG
* * **
325796 GCGATAGCACCCCGGGAGAAAAAAAATGCAGCACCAGCACATGTTTGAGCCCAGCATGTGCACCC
1 G-G-T-G--CCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCC
* * * *
325861 GTAAGCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
61 GCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
* * * * *
325926 CTCCGTATGCCTAAGTTAACCCACGAAACGAGCATGCAGGCGCTCAGTCGGCCAAAGGGGTAGGA
126 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGA
* * * * * ** *
325991 TGCGTAAGCCGAGGATTGACCGGGTCCCCCTCTGCATGCTGCCAATCTTGCTGCGGCAACCCTCT
191 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCACAACCCTCA
* * * *
326056 GTTTGGTATGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCCGG
256 GTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCGG
* * * * **
326121 TGCACGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCAGTGGATCAATAATGTGGTAGGTGG
321 -GCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
326186 GTTTAGGAACTTCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAA
385 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
326251 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTT
450 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTT
*
326316 TTAAAACTTTCTACGATTCGAGATTTTTAAAACTTTCTACGGTTCAGGATTTTTTTAAAATTTTT
515 TTAAAACTTT-T----TACG-G-------------T-T-C-G---A-GA-TTTTTTAAAATTTTT
* * * *
326381 TCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGATGCACAAA
553 TCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
326446 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
618 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
326511 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
683 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT-A
* * * *
326576 GTTCTCAAGTTTTGATGACGG-TAGGGGGCCAATATAAGGG-CAAGTACCAGCACCTATCGCACA
747 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
326639 T
812 T
326640 TGTCGTAACG
Statistics
Matches: 3040, Mismatches: 346, Indels: 242
0.84 0.10 0.07
Matches are distributed among these distances:
875 97 0.03
876 1 0.00
878 4 0.00
879 2 0.00
882 1 0.00
883 1 0.00
884 73 0.02
885 256 0.08
886 394 0.13
887 582 0.19
888 82 0.03
889 45 0.01
890 5 0.00
891 2 0.00
892 2 0.00
893 5 0.00
894 6 0.00
895 3 0.00
896 7 0.00
897 1 0.00
898 3 0.00
899 249 0.08
900 585 0.19
901 11 0.00
902 253 0.08
904 3 0.00
905 2 0.00
908 2 0.00
909 4 0.00
912 100 0.03
918 1 0.00
919 1 0.00
920 1 0.00
921 1 0.00
925 219 0.07
926 18 0.01
927 18 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (888 bp):
GGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAAC
CCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGC
AAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCACAACCCTCAGTTTG
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCGGGCAGG
CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAA
CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCGTCCCCCCAATC
GCCAGAACCCCTAATGCCGCCGGTCAGGTTCTCCGGCAATGAG
Found at i:327561 original size:17 final size:17
Alignment explanation
Indices: 327525--327578 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
327515 TTTTTAGGAC
*
327525 TTTGAATTTTAAGAGG-T
1 TTTGAATTTT-AGGGGAT
327542 TTTGAATTTTAGGGGAT
1 TTTGAATTTTAGGGGAT
*
327559 TTTGGATTTTTA-GGGAT
1 TTT-GAATTTTAGGGGAT
327576 TTT
1 TTT
327579 AAAAACTTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 4 0.12
17 22 0.67
18 7 0.21
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (17 bp):
TTTGAATTTTAGGGGAT
Found at i:328989 original size:13 final size:14
Alignment explanation
Indices: 328973--329012 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
328963 GTTTTTTTAC
328973 TTTTTTTGTATTA-
1 TTTTTTTGTATTAT
*
328986 TTTTTTGGTATTTAT
1 TTTTTTTGTA-TTAT
329001 TTTTTTTGTATT
1 TTTTTTTGTATT
329013 TTGTATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 9 0.39
14 5 0.22
15 9 0.39
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (14 bp):
TTTTTTTGTATTAT
Found at i:329013 original size:15 final size:14
Alignment explanation
Indices: 328968--329013 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 14
328958 TTTTTGTTTT
328968 TTTACTTTTTTTGTA
1 TTTA-TTTTTTTGTA
*
328983 -TTATTTTTTGGTA
1 TTTATTTTTTTGTA
328996 TTTATTTTTTTTGTA
1 TTTA-TTTTTTTGTA
329011 TTT
1 TTT
329014 TGTATAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 9 0.33
14 6 0.22
15 12 0.44
ACGTcount: A:0.13, C:0.02, G:0.09, T:0.76
Consensus pattern (14 bp):
TTTATTTTTTTGTA
Found at i:329321 original size:87 final size:89
Alignment explanation
Indices: 329200--329393 Score: 293
Period size: 87 Copynumber: 2.2 Consensus size: 89
329190 AAAAATAATA
* * *
329200 AATCGATCGAGATAACACACGTGAATCAAAATTATGCCCGGAGGCCTTACAGAATAGACTGGGAT
1 AATCGATCGGGATAACACACGTGAATCAAAATTATGCCCGAAGGCCTTACAAAATAGACTGGGAT
*
329265 AACATCG-CAGTCAAAAGATAAAG
66 AACATCGTAAGTCAAAAGATAAAG
* * * *
329288 AATCGATCGGGATAACA-TCGTGAATCAAAATTATGTCCGAAGGTCTTACAAAATCGACTGGGAT
1 AATCGATCGGGATAACACACGTGAATCAAAATTATGCCCGAAGGCCTTACAAAATAGACTGGGAT
*
329352 AACATCGTAAGTCAAAAGATAAGG
66 AACATCGTAAGTCAAAAGATAAAG
329376 AATCGATCGGGATAACAC
1 AATCGATCGGGATAACAC
329394 CACGAATCGA
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
87 48 0.51
88 47 0.49
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.20
Consensus pattern (89 bp):
AATCGATCGGGATAACACACGTGAATCAAAATTATGCCCGAAGGCCTTACAAAATAGACTGGGAT
AACATCGTAAGTCAAAAGATAAAG
Found at i:329407 original size:88 final size:86
Alignment explanation
Indices: 329200--329408 Score: 274
Period size: 88 Copynumber: 2.4 Consensus size: 86
329190 AAAAATAATA
* * *
329200 AATCGATCGAGATAACACACGTGAATCAAAATTATGCCCGGAGGCCTTACAGAATAGACTGGGAT
1 AATCGATCGGGATAACACAC--GAATCAAAATTATGCCCGAAGGCCTTACAAAATAGACTGGGAT
*
329265 AACATCGCAGTCAAAAGATAAAG
64 AACATCGAAGTCAAAAGATAAAG
** * * *
329288 AATCGATCGGGATAACATCGTGAATCAAAATTATGTCCGAAGGTCTTACAAAATCGACTGGGATA
1 AATCGATCGGGATAACA-CACGAATCAAAATTATGCCCGAAGGCCTTACAAAATAGACTGGGATA
*
329353 ACATCGTAAGTCAAAAGATAAGG
65 ACATCG-AAGTCAAAAGATAAAG
*
329376 AATCGATCGGGATAACACCACGAATCGAAATTA
1 AATCGATCGGGATAACA-CACGAATCAAAATTA
329409 CGCTCGGAGG
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
87 45 0.43
88 59 0.56
89 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.20
Consensus pattern (86 bp):
AATCGATCGGGATAACACACGAATCAAAATTATGCCCGAAGGCCTTACAAAATAGACTGGGATAA
CATCGAAGTCAAAAGATAAAG
Found at i:329574 original size:133 final size:133
Alignment explanation
Indices: 329329--329584 Score: 363
Period size: 133 Copynumber: 1.9 Consensus size: 133
329319 TATGTCCGAA
* * * *
329329 GGTCTTACAAAATCGACTGGGATAACATCGTAAGTCAAAAGATAAGGAATCGATCGGGATAACAC
1 GGTCTTACAAAATCGACTGGAATAAAATCATAAGTCAAAAGATAAGGAATCGATCGAGATAACAC
* * *
329394 CACGAATCGAAATTACGCTCGGAGGTTTTAAGAATCATACCTGAAGGTCTTATAGAATCATGCCC
66 CACGAATCAAAATTACGCTCGGAGGTCTTAAGAATCATACCTAAAGGTCTTATAGAATCATGCCC
329459 AAT
131 AAT
* *
329462 GGTCTTACAGAATCGACTGGAATAAAATCATAAGTCGAAAGATAAGGAATCGATCGAGATAACAC
1 GGTCTTACAAAATCGACTGGAATAAAATCATAAGTCAAAAGATAAGGAATCGATCGAGATAACAC
** * *
329527 CGTGAATCAAAATTATGCTCGGAGGTCTT-AGAAATCAT-GCTCAAAGGTCTTATAGAAT
66 CACGAATCAAAATTACGCTCGGAGGTCTTAAG-AATCATACCT-AAAGGTCTTATAGAAT
329585 TGACTCAGGT
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
132 4 0.04
133 104 0.96
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (133 bp):
GGTCTTACAAAATCGACTGGAATAAAATCATAAGTCAAAAGATAAGGAATCGATCGAGATAACAC
CACGAATCAAAATTACGCTCGGAGGTCTTAAGAATCATACCTAAAGGTCTTATAGAATCATGCCC
AAT
Found at i:330206 original size:43 final size:43
Alignment explanation
Indices: 330133--330233 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
330123 GCAAGTGCAA
* *
330133 ATGCAAGTGATGCAAATGCAAATGCTCCTTTCTTG-TAGTACAG
1 ATGCAAGTGATGCAAATGCAAATGCTCCTTTCATGAT-GCACAG
*
330176 ATGCAAGTGATGCAAATGCAAAT-ATCCCTTTCATGATGCACAG
1 ATGCAAGTGATGCAAATGCAAATGCT-CCTTTCATGATGCACAG
330219 AT--AAGTGATGCAAAT
1 ATGCAAGTGATGCAAAT
330234 TTGAATATCT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
41 13 0.25
42 1 0.02
43 38 0.72
44 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (43 bp):
ATGCAAGTGATGCAAATGCAAATGCTCCTTTCATGATGCACAG
Found at i:330447 original size:33 final size:32
Alignment explanation
Indices: 330374--330717 Score: 265
Period size: 33 Copynumber: 10.5 Consensus size: 32
330364 TTGGGGCTAA
*
330374 ATAAACTTGGCTTAAAT-TT-ATTGAAGGCCAG
1 ATAAACTAGGCTTAAATCTTCATTGAA-GCCAG
* *
330405 CTAAACTAGGCTTAAATCTTCATTTGAAGTCAG
1 ATAAACTAGGCTTAAATCTTCA-TTGAAGCCAG
* * * *
330438 ATAAACTAGGTTTAAAACCTT-ATTGATGGCTAG
1 ATAAACTAGGCTT-AAATCTTCATTGA-AGCCAG
* * *
330471 ATGAACTGGGCTTAAAGCTTCATT-AATGGCCAG
1 ATAAACTAGGCTTAAATCTTCATTGAA--GCCAG
*
330504 ATAAACTAGGCTTAAAGT-TTCATTAAGAGCCAG
1 ATAAACTAGGCTTAAA-TCTTCATTGA-AGCCAG
* *
330537 GTAAACTAGGCTTAAAGCTTCATT-AATGGCCAG
1 ATAAACTAGGCTTAAATCTTCATTGAA--GCCAG
* *
330570 ATAAACTAGGCTTAAAT-ATCATTGATGGCCAG
1 ATAAACTAGGCTTAAATCTTCATTGA-AGCCAG
* * * *
330602 ATAAATTGGGTTTAAATCTTCATTTGAGGCCAG
1 ATAAACTAGGCTTAAATCTTCA-TTGAAGCCAG
* *
330635 ATAAAC-AGGGCTTAAATTTTCATTGATGGCCAG
1 ATAAACTA-GGCTTAAATCTTCATTGA-AGCCAG
* *
330668 ATAAACTAGGCTTAAAACTTCATT-AATGGCCAT
1 ATAAACTAGGCTTAAATCTTCATTGAA--GCCAG
*
330701 ATAAACTGGGCTTAAAT
1 ATAAACTAGGCTTAAAT
330718 TTTTTTATTT
Statistics
Matches: 252, Mismatches: 38, Indels: 44
0.75 0.11 0.13
Matches are distributed among these distances:
31 16 0.06
32 43 0.17
33 175 0.69
34 17 0.07
35 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (32 bp):
ATAAACTAGGCTTAAATCTTCATTGAAGCCAG
Found at i:330656 original size:131 final size:131
Alignment explanation
Indices: 330374--330717 Score: 407
Period size: 131 Copynumber: 2.6 Consensus size: 131
330364 TTGGGGCTAA
* * * *
330374 ATAAACTTGGCTTAAATTT-ATTGAAGGCCAGCTAAACTAGGCTTAAATCTTCATT--TGAAGTC
1 ATAAACTAGGCTTAAATTTCATTGAAGGCCAGATAAACTAGGCTTAAAACTTCATTAATG--GCC
* * * *
330436 AGATAAACTAGGTTTAAA-ACCTTATTGATGGCTAGATGAACTGGGCTTAAAGCTTCATTAATGG
64 AGATAAACTAGGCTTAAATA-CTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGG
330500 CCAG
128 CCAG
* *
330504 ATAAACTAGGCTTAAAGTTTCATT-AAGAGCCAGGTAAACTAGGCTTAAAGCTTCATTAATGGCC
1 ATAAACTAGGCTTAAA-TTTCATTGAAG-GCCAGATAAACTAGGCTTAAAACTTCATTAATGGCC
* * * *
330568 AGATAAACTAGGCTTAAATA-TCATTGATGGCCAGATAAATTGGGTTTAAATCTTCATTTGA-GG
64 AGATAAACTAGGCTTAAATACTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCA-TTAATGG
330631 CCAG
128 CCAG
*
330635 ATAAAC-AGGGCTTAAATTTTCATTGATGGCCAGATAAACTAGGCTTAAAACTTCATTAATGGCC
1 ATAAACTA-GGCTTAAA-TTTCATTGAAGGCCAGATAAACTAGGCTTAAAACTTCATTAATGGCC
* *
330699 ATATAAACTGGGCTTAAAT
64 AGATAAACTAGGCTTAAAT
330718 TTTTTTATTT
Statistics
Matches: 187, Mismatches: 18, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
130 16 0.09
131 114 0.61
132 54 0.29
133 1 0.01
134 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (131 bp):
ATAAACTAGGCTTAAATTTCATTGAAGGCCAGATAAACTAGGCTTAAAACTTCATTAATGGCCAG
ATAAACTAGGCTTAAATACTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
G
Found at i:330720 original size:66 final size:65
Alignment explanation
Indices: 330374--330719 Score: 373
Period size: 66 Copynumber: 5.3 Consensus size: 65
330364 TTGGGGCTAA
* * * * *
330374 ATAAACTTGGCTTAAATTT-ATTGAAGGCCAGCTAAACTAGGCTTAAATCTTCATT--TGAAGTC
1 ATAAACTAGGCTTAAATTTCATTGATGGCCAGATAAACTAGGCTTAAAGCTTCATTAATG--GCC
330436 AG
64 AG
* * * * *
330438 ATAAACTAGGTTTAAAACCTT-ATTGATGGCTAGATGAACTGGGCTTAAAGCTTCATTAATGGCC
1 ATAAACTAGGCTT-AAA-TTTCATTGATGGCCAGATAAACTAGGCTTAAAGCTTCATTAATGGCC
330502 AG
64 AG
* *
330504 ATAAACTAGGCTTAAAGTTTCATT-AAGAGCCAGGTAAACTAGGCTTAAAGCTTCATTAATGGCC
1 ATAAACTAGGCTTAAA-TTTCATTGATG-GCCAGATAAACTAGGCTTAAAGCTTCATTAATGGCC
330568 AG
64 AG
* * * * * *
330570 ATAAACTAGGCTTAAATATCATTGATGGCCAGATAAATTGGGTTTAAATCTTCATTTGA-GGCCA
1 ATAAACTAGGCTTAAATTTCATTGATGGCCAGATAAACTAGGCTTAAAGCTTCA-TTAATGGCCA
330634 G
65 G
*
330635 ATAAAC-AGGGCTTAAATTTTCATTGATGGCCAGATAAACTAGGCTTAAAACTTCATTAATGGCC
1 ATAAACTA-GGCTTAAA-TTTCATTGATGGCCAGATAAACTAGGCTTAAAGCTTCATTAATGGCC
*
330699 AT
64 AG
*
330701 ATAAACTGGGCTTAAATTT
1 ATAAACTAGGCTTAAATTT
330720 TTTTATTTTA
Statistics
Matches: 236, Mismatches: 34, Indels: 23
0.81 0.12 0.08
Matches are distributed among these distances:
64 12 0.05
65 64 0.27
66 158 0.67
68 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (65 bp):
ATAAACTAGGCTTAAATTTCATTGATGGCCAGATAAACTAGGCTTAAAGCTTCATTAATGGCCAG
Found at i:332004 original size:10 final size:10
Alignment explanation
Indices: 331989--332015 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
331979 GTCATAACAA
331989 TTTTTTTTCT
1 TTTTTTTTCT
331999 TTTTTTTTCT
1 TTTTTTTTCT
332009 TTTTTTT
1 TTTTTTT
332016 GTTGTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:332023 original size:10 final size:9
Alignment explanation
Indices: 331989--332033 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
331979 GTCATAACAA
331989 TTTTTTTTC
1 TTTTTTTTC
331998 TTTTTTTTTC
1 -TTTTTTTTC
*
332008 TTTTTTTTG
1 TTTTTTTTC
* *
332017 TTGTTTTTA
1 TTTTTTTTC
332026 TTTTTTTT
1 TTTTTTTT
332034 ATGCCCCATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
9 22 0.71
10 9 0.29
ACGTcount: A:0.02, C:0.04, G:0.04, T:0.89
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:334950 original size:26 final size:26
Alignment explanation
Indices: 334914--334966 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
334904 CCAGTCTGAT
* *
334914 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAAAGAACTCCGTATG
*
334940 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTACACTGGGAAAGAACTCCGTATG
334966 C
1 C
334967 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAAAGAACTCCGTATG
Found at i:337122 original size:26 final size:26
Alignment explanation
Indices: 337093--337145 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
337083 ATGATCCGAT
*
337093 CTTACACTGG-AAATGAATTCCGTATG
1 CTTACACTGGTAAA-GAACTCCGTATG
* *
337119 CTTAGACTGGTAAAGAACTCTGTATG
1 CTTACACTGGTAAAGAACTCCGTATG
337145 C
1 C
337146 CTTAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTACACTGGTAAAGAACTCCGTATG
Found at i:338570 original size:884 final size:884
Alignment explanation
Indices: 335638--343449 Score: 9239
Period size: 895 Copynumber: 8.8 Consensus size: 884
335628 TCTAGTCTGA
* * * *
335638 TCATATTTCTGACATGTCAATGTCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCC
1 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
335703 TTCATGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
66 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * *
335768 GGCTCTGGATTTTTTAAAAATTTTTTCAGAAGGATTTTTGGCCCTAAACTTGGTAGACATGATCC
131 GGTTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
335833 TTGTATTTTTGTTGGCATGCACAAAAAAATTCTGCAAAAAACTTGAAGTGTACAGGATTTTGTGA
196 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
*
335898 CCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
261 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
335963 TCAAATGCTCTTTAAGGGGGTGTGTGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
326 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
336028 GCCAAGTACCAGCACCCATCGCACATCATGTGTGCAACCCCCCCCCGCCCCCCAATCGTCAGAAC
391 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCAA---CCCCCCACCCCCCAATCGTCGGAAC
* * * * ** * * * *
336093 CCCGATGCCGCCTGTCAAGTTCTCCGGTGATGCTCAGGCGATGGTACCCCGAGCAAAAAAAAAAG
453 CCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATG
* * * *
336158 TGGCACCAGCACATGCCCGAG-CCAGTATGTGCACCCGTAACCCTCTGT-CT--G----G--T--
518 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTCGGTCCTACGTCACGAATGA
* *
336211 -C-T-G-AT-CTTACACTGGGAATGAACTTCGTATGCTTAGACTGTAAGTCAACCCACGAAACGA
583 ACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGC-----C--TAAGTCAACCCACGAAACGA
* * * * * * *
336271 TCGTGTGGGCACTCAGCTGGCCAGAGGGGTAGGATGCGCAAGCTGGGGATCGGCTGGGTCCCCCA
641 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGT-CCCCA
* * * * *** *
336336 CTGCATGTTGCCAATCCTGCTACCACAACCCTCAGTCCAATCTGATCTTAGACGGGGAATGAACT
705 CTGCATGCTGCCGATCCTGCTACCACAAACCTCATTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * *
336401 CCGTATACCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGG
770 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
*
336466 GATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
835 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
336516 TCATATTTTTGCTATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
1 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
336581 TTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTAC
66 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-
* * *
336646 CGCTT-TGGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATC
130 CGGTTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * * * *
336710 CTTTTATTTTTTTTGGTATGCACAAAAAAATTCATCTAAAAACTCAAAGTGTATAAGATTTTGTG
195 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
336775 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
260 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
336840 CTCAAATACTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
325 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * * * *
336905 GGCCAAGTACCGGCACCCATCGGACATCAGGTGCGCACACCCCCCGCCCCCCCAATTGCCGAAAC
390 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-ACCCCCC-ACCCCCCAATCGTCGGAAC
* * **
336970 CCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTGTGATGGTGCCCCGGG-TGAAAAAAATG
453 CCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATG
* * * * * *
337034 TGGCACCAGAACATGCCCAAGCCCAGCATGTGCACCCGTAACCCTCAGTATGATCCGATCTTACA
518 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTC-G---G-TCCTA-CGT-CA
* * * * * *
337099 CTGGAAATGAA-TTCCGTATGCTTAGACTGGTAAAGAACTCTGTATGCCTTAGTTAACCCATGAA
576 C--G-AATGAACTT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * ** *
337163 ACGACCGTGTGGGCGCTCAGCCGGCCAGAGGGGCAGAATGCACAAGTTGGGGATTGGCCGGGTCC
637 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCC
* ** * * ** * *
337228 CCCCTTGCATGCTGCAAATCTTGCTACCATAGCCCTCAATCCGGTCTGATCTTAGACTGGGAATG
702 CCAC-TGCATGCTGCCGATCCTGCTACCACAAACCTCATTCTGGTCTGATCTTAGACTGGGAATG
* * * * * **
337293 AACTCCGTATGCCTAGGGCAACCAATGAAACGAGC-AGCGGGTAGGCACTACGCCGGCCAGAGAG
766 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
*
337357 GCGGGGTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
831 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
**
337411 TCATATTT-TGGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
1 TCATATTTCT-GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
337475 CTTCATGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTA
65 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
337540 CGGTT-TGAGATTTTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTAGTAGACATGA
130 CGGTTCTG-GA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
337604 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
193 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
337669 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
258 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
337734 ATCTCAAATGCTCTTTAAGAGGGTGTTAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
323 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
337799 AGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGCATACCCCCCACCCCCCAATCGCCGGAA
388 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-ACCCCCCACCCCCCAATCGTCGGAA
* *
337864 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCTGGGCAAAAAAAAAA
452 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGC-AAAAAAAAA
* *
337929 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTACCCATAGCCCTCGGTCC-A-GTC-CGAAT
516 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTCGGTCCTACGTCACGAAT
* * * *
337991 GAACTTCGTATGGTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGGAACGAGCGCG
581 GAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * *
338056 CGGGTGCTCAGTCGGCCAGAGGGGCAAGATGCGTAAGCCGGGGATCAGTCGGGTCTCCCACTGCA
646 CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTC-CCCACTGCA
* * * *
338121 TACTGCCGATCCTACTGCCACAAACCTCATTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTA
710 TGCTGCCGATCCTGCTACCACAAACCTCATTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * * * * * *
338186 CGCCTAAGCCGACCGATGAAACGAGCGGACGGGCGGGCAATATGTCGGTCAGAGAGGTGGGATGC
775 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* *
338251 ACAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
840 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
338296 TCATATTTCTACCATGCCAATGTCTTTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCC
1 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
338361 TTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAG
66 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * * *
338426 GGCTCTGGATTTTTTAAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTAGTAGATGTGATCC
131 GGTTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * * *
338491 TTTTATTTTTTTTGGCATGCATAAAAAAATTCATCTAAAAACTCAAAGTGCACAGGATTTTGTGA
196 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* *
338556 CCATTTGCAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
261 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
338621 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCACGGTTTGATGAGGGATAGGGGGCCAATATAAGG
326 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * * * *
338686 GCCAAGTACTAGCATCCATCGCACATCATGTGCGCAAACCCCCGCCCCCCAACCGTCAGAA-CCT
391 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACCCCCCACCCCCCAATCGTCGGAACCCC
* * *
338750 AATGCCGTCGGTCAGGTTCTACGACGATGCTCCGACGATGGTG-CCCTGG-----------GC-G
456 AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATGCGG
* * * *
338802 -ACCAGCACTTGCCTGAGCCCTGCATGTGCACCCATAACCCTCGGTCCAATCTGATCTTACACTG
521 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTCGGT-C---CT-A-CGT-CAC--
* * *
338866 GGAATGAACTCCGCATGCTTAGACTGAGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
577 -GAATGAACTTCGTATGCTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * ** * * * *
338930 AGCATGTGGGTGCTCAATCGGCCAGAGGGGCAGGATGCACAAGCTGAGGATCGGTCGGGTCCCC-
640 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCA
* * * * ***
338994 CTGCATGCTGCTGATCTTACTACCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACT
705 CTGCATGCTGCCGATCCTGCTACCACAAACCTCATTCTGGTCTGATCTTAGACTGGGAATGAACT
** * * **
339059 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGATGGGCGAGCACTACGACGGCCAGAGAGGCAA
770 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
*
339124 GATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCT
835 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
339174 TCAT-TTTCTGTCGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
1 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * * **
339238 TTCATGTGAAGTGTCAT-GCAAAGATGACTCGTTTTCTATTTTTCATGATTTCTAAAACCATTTA
66 TTCATGTGAAGTTTCATGGC-AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* *
339302 CAGTTC-GCGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGAT
130 CGGTTCTG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * * * * *
339366 TCTTGTGTTTATGTTGGCATGCACAAAAACATTCTGCAAAAAACTCGAAGTGTACAGGATTTTGT
194 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
* * ** *
339431 GACCATTTGAAAAAATTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAATAAACCGGTAAAA
259 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
** *
339496 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAAAA
324 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
339561 GGGCCAAGTACCAGCAACCATCGCATATCATGTGCGCAACCCCCCCACCCCCCCAATCGCCGGAA
389 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAA-CCCCCCA-CCCCCCAATCGTCGGAA
* * * ** *
339626 CCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGACGATGGTACCCTTGGCGAAAAAAAAT
452 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAAT
* ** * *
339691 GTGGCACCAGCACATGCCCGAGCCCAGCATGT-CACCCGCAACCCTCTGTCTGGTCTGATCTTAC
517 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTCGGTC----CT-A-CGT-C
* * *
339755 ATCGGGAATGAAC-TCTGTATGGTTAGACTGGGAATGAACTCCATATGCCTAAGTTAACCCACGA
575 A-C--GAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* ** * * *
339819 AACGACCGTGCGGGCGCTCAGCCAACCAGAGGGGTAGGATGCGCAAGCGGGGGATCGGTCGGGTC
636 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGT-
** ** **
339884 CCCCACTGTGTGCTATCGATCCTGC-AGCTGC-AACCTTCTATT-TGGTCTGATCTTAGACTGGG
700 CCCCACTGCATGCTGCCGATCCTGCTA-CCACAAACC-TC-ATTCTGGTCTGATCTTAGACTGGG
* * * * *
339946 AATGAACTCCGTATGCCTAAGCAAATCGACGAAACGAGCGGGCGGGCGGGCACTATGTCGACCAG
762 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAG
* *
340011 AGAGGCGGGATGCGCAA-TCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCT
827 AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * ** *
340068 TTATATTTTTGCTGTGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
1 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * ** *
340133 TTCATGTGAAGTTTCATGGCAAGACGATTCGTTTTTTATTTTTCACGATTTTCAAAACGTTTTAC
66 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * * * *
340198 TGTTCGGGATTTTTTTTAAATTATTGCAGAAGGACTTTTGACCCCAAACTTGGTAGACGTGATCC
131 GGTTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
340263 TTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
196 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
*
340328 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATC
261 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
***
340393 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGTGGTTTGATGAGGGATAGGGGGCCAATATAAGG
326 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
340458 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACCCCCCCGCCCCCCCAATCGTC-GAACC
391 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCAA-CCCCCC-ACCCCCCAATCGTCGGAACC
* * * * * * * * * * *
340522 CCAATGTCGCCAGTCAGGTTCTCCAACGATGCTCTGACGATGGTGCCTCGGACGAAAAACAATGT
454 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATGC
* *
340587 GGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGTCTGATCTTACAC
519 GGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTCGGTC----CT-A-CGT-CAC
*
340652 TGGGAATGAA-TTGCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
577 ---GAATGAACTT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * ** * * * * *
340716 CGAGCGTGCGGGGGCTCAGTCGGCCAGAGGGGCAAAATACGCAATCCAGGGATCGACTGGGTCCC
638 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGT-CC
* * * * * * *** *
340781 CCCCTGCGTGCTACCAATCGTCCTACCAC-AA-C-CATTGGACCAATCTGATCTTAGACTAGGAA
702 CCACTGCATGCTGCCGATCCTGCTACCACAAACCTCATT---CTGGTCTGATCTTAGACTGGGAA
* * * * * *
340843 TGAACTCCGTACGCCTAAGCCAACCGACGAAACAAACGGACGGGTGGGCACTACGTCGGCCAGAG
764 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAG
*
340908 AGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
829 AGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
340964 TCATATTTCTACCATGCGAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGCC
1 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
341029 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACGATTTTTAAAACTTTTTAC
66 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
** * * *
341094 GGTTCAAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTT-GCCCTAAACTTGGTAAACGTGATCC
131 GGTTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
341158 TTGTAATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTTGAAGTGTATAGGATTTTGTG
196 TTGT-ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
*
341223 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAAT
260 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
341288 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
325 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
341353 TGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCA-CCCCCAATCGTTGAAACC
390 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-ACCCCCCACCCCCCAATCGTCGGAACC
* *
341417 CCAATGCCGTCGGTCAGGTTCT-C--C-A-------GCGATGGTGCCCCAGGCGAAAAAAAAATT
454 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGC-AAAAAAAAATG
* * * * ** * * *
341471 CGACACCAGTACATGCCCAAGCCCATCATGTGCACCCGCAACCCTCAGCCCAATCTGATTTTACA
518 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTCGGTCCTA-C-G----T-CA
* * * * * *
341536 CTGGGAATGATCTTTGTATGCTTAAATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGTAA
576 C---GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * * **
341601 CGAGCGTGCGGGTGCTCAACTGGCCAGAGGGGCAGGATGCCCATGCCGGGGAGCGGCCGGCTCTG
638 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
* * ** * * ** * ** *
341666 CGCTGCGTGCTGTTGATCCTACTGCTGCAACCCTCAGCCTGGTCTGATCATAGACTGGGAATGAA
703 CACTGCATGCTGCCGATCCTGCTACCACAAACCTCATTCTGGTCTGATCTTAGACTGGGAATGAA
** ** ** *
341731 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAAGCGGGCACTACGCTAGTTAGAGAGAC
768 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
* * *
341796 GGGATGCGCAAGCCGTGGAACGATAGAGTGGTAGTTGGGTTTAGGCACATCT
833 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
341848 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTTAGCC
1 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * ** * *
341913 TTCAAGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCAC-AACTTTCAAAATTTCTTA
66 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT-TTA
* * * *
341977 CGGTTCAGGATTTTTTCTAAAATTTTTTCAGAAGGTGTTTTAGCCCTAAACTTGGTAGACGTGAT
130 CGGTTCTGGATTTTTT-TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * * *
342042 CCTTGTATTTTTTTTGGGATGTACAAAAAAATTCAACCAAAAAATCGAAGTGTACAGGATTTTGT
194 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
* * * * *
342107 GACCATTTGAAAAAAATGTTCCCATTTTAGACACTTTAACGGCTACTGGTAGCAAACCTGTAAAA
259 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
342172 TCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAA
324 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
342237 GGGCCAAGTAGCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCAATCG-CTGGA
389 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-ACCCCCC-ACCCCCCAATCGTC-GGA
* * * * *
342301 TCCCTAGTGCCATCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGGGCAAAAAAAAA
451 ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAA
* * * *
342366 TGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCA-CCACAACCCTCGGTCCAGTCCGATCTTA
516 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTCGGTCC--TACG-TC--A
* * * * *
342430 CATTGGGAATGAAC-TCTGTATACTTAGACTGCGAATGAACTTCGTATGCCTAAGTCAACCAATG
576 C-----GAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * *
342494 AAACGAACGTACAGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGTAAGCCGAGGATCGGCCGAGT
635 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGT
* * * * **
342559 CCCCCCTGCGTGCTACCGAT-CTGGCTGCCAC-AACCGTCGGTCTGGTCTGATCTTAGACTGGGA
700 CCCCACTGCATGCTGCCGATCCT-GCTACCACAAACC-TCATTCTGGTCTGATCTTAGACTGGGA
* * * *
342622 ATGAACTCCGTGTGCCTAAGCCAACCGACGAAACG-GACGGGTGGGCGGGGCACTACACCGGTCA
763 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGGCGGGC-GGGCACTACGCCGGCCA
* *
342686 GAGAGGCGGGATGCGCAAGCCATGGATCGATAGAG-GGTAGGTGGGTTTAGGCACATCT
826 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
342744 TCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
1 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
342809 TTCATGTGAAGTGTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
66 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * ** *
342874 GGTTCAGGATTTTTTTAAAATTTTTTTC-GAATGTGTTTTGGAACCAAACTTGGTAGACATGATC
131 GGTTCTGGATTTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *** * * **
342938 CTTGTATTTTTTTTGGCTTGTGTAAAACAATTCAGCTAAGAACTCGAAGTGTGTAGGATTTTGTG
195 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
*
343003 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAAT
260 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
343068 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCGAATATAAG
325 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
343133 GGCCAAGTACCAGCACCCATCGCACATCATATGTGCACACCCCCCGGCCCCCCCAATCATCGAAA
390 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-ACCCCCC--ACCCCCCAATCGTCGGAA
* * *
343198 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGGCGAAAAGAAAA
452 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGC-AAAAAAAAA
* * * * *
343263 TGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCAACCACAACGCTCGATCCGGTCCGATCTTA
516 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAAC-C-C--T-CGGTCCTA-CGT-
* * * * *
343328 TACTGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCTACGA
574 CAC--G-AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
343393 AACGAGCGTGCGGGCGCTCAGCAGGCTAAAGAGGCAGGATGCGCAAGTCGAGGATCG
636 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
343450 ATCTTAGACT
Statistics
Matches: 5989, Mismatches: 791, Indels: 288
0.85 0.11 0.04
Matches are distributed among these distances:
867 40 0.01
868 2 0.00
869 2 0.00
871 1 0.00
873 1 0.00
875 1 0.00
876 37 0.01
877 448 0.07
878 550 0.09
879 21 0.00
880 150 0.03
881 13 0.00
882 43 0.01
883 31 0.01
884 720 0.12
885 595 0.10
886 34 0.01
887 36 0.01
888 2 0.00
889 1 0.00
890 1 0.00
891 6 0.00
892 11 0.00
893 132 0.02
894 184 0.03
895 1327 0.22
896 1251 0.21
897 190 0.03
898 119 0.02
899 3 0.00
900 3 0.00
901 2 0.00
902 4 0.00
903 28 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
GGTTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACCCCCCACCCCCCAATCGTCGGAACCCC
AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATGCGG
CACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTCGGTCCTACGTCACGAATGAACT
TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCACTGCATGCTGC
CGATCCTGCTACCACAAACCTCATTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
Found at i:340684 original size:26 final size:26
Alignment explanation
Indices: 340645--340697 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
340635 CTGGTCTGAT
* * *
340645 CTTACACTGGGAATGAATTGCGTATG
1 CTTACACTGCGAATGAACTCCGTATG
*
340671 CTTAGACTGCGAATGAACTCCGTATG
1 CTTACACTGCGAATGAACTCCGTATG
340697 C
1 C
340698 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGCGAATGAACTCCGTATG
Found at i:343353 original size:26 final size:26
Alignment explanation
Indices: 343324--343376 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
343314 CCGGTCCGAT
* *
343324 CTTATACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
343350 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
343376 C
1 C
343377 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:344172 original size:26 final size:26
Alignment explanation
Indices: 344143--344195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
344133 CCGATCCGAT
*
344143 CTTACACTGGGATTGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
344169 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
344195 C
1 C
344196 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:344759 original size:848 final size:846
Alignment explanation
Indices: 343502--346002 Score: 3021
Period size: 889 Copynumber: 2.9 Consensus size: 846
343492 CAAAATGAGC
* *
343502 GGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGTAAGCCGTGCATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
* *
343567 GGTGGGTTTGGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATGTGAATTCA
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT-AATTCA
*
343632 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGAC-CTATTTTCTATTTTTCA
130 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC-ATTTTCTATTTTTCA
* * *
343696 TGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGCAGTTTTGGCCCC
194 TGATTTTCAAAA-TTTTTACGGTTCAGGATTTTTTTAAAA-TTTTTCAAAAG-AGTTTTGGCCCC
* * * *
343761 AAACTTAGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTACAAACTCA
256 AAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
343826 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
320 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
343891 GGCAACAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
385 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
343956 GATAGGGGGCCAATATAAGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAA
450 GATAGGGGGCCAATATAAGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAA
* * * *
344021 TCACCGAAACCCGAATACCGCCGTCAGGTTCTTCGGCGATGGTGCCCCGGGCGAAAAAAAATGCA
515 TCACCG-AACCC-AATGCCGTCGTCAGGTTCTTCGGCGATGGTGCCCCAGGCGAAAAAAAATGCG
* * ** *
344086 GCACAAGTACATGCCCGAGCCCAGCATGTGCACCTGCAACCCTTAGTCCGATCCGATCTTACACT
578 GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTTGGTCCGATCCGATCTTACACT
* * *
344151 GGGATTGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCGACGAAACG
643 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAACG
* * * *
344216 ACCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGTGCAAGCCGGGGATCGATCGGGTCCCCT
707 AGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAAGATGCGCAAGCCAGGGATCGATCGGGTCCCC-
* ** * **
344281 C-CTGCGTGCTGCTGATCCTGCTACCGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAA
771 CACTACGTGCTGCCAATCCTGCTACAGCAACCCTCAGTCGGGTCCAATCTTAGACTGGGAATGAA
344345 -CT-ACG-CT-
836 CCTGACGCCTA
* * * **
344352 GGGTGGGCGGGCACTACGCCGGCCAGAGTGACGGGATGCGTAAATCGTGGATCGATA-GGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
* *
344416 GGTGGGTTTAGGCGCATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAATTTCA
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA-TTCA
* * * * * *
344481 TACAATGGCCCCTTAAGCCTTCATGTCAAGTTTTATGGCAGGACGACTCGTTTTCTATTTTTTAT
130 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAT
*
344546 GATTTTCAAATATTTTTACGGTTCGGGATTTTTTT-AAATTTTTCCAAAAAGAGTTTTGGCCCCA
195 GATTTTCAAA-ATTTTTACGGTTCAGGATTTTTTTAAAATTTTT-C-AAAAGAGTTTTGGCCCCA
* *
344610 AAGTTGGTAGACGTGATCCTTGTATTTTTTCTGGCATGCACAAAAAAATTTAGCTAAAAACTCGA
257 AACTTGGTAGACGTGATCCTTGTATTTTTT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
344675 AGTGTACAGGGTTTTGTGACCATTTGAAAAAACTGTCCCCAATTCAGACACTTTAATGGCTACTG
321 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
344740 GCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAAGG
386 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
344805 ATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTTCACACACCCCCCGC
451 ATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-------C
* *
344870 CCCCCAATGC-CCGAACCACAATGCCGTCGATCAGGTTCTCCGGCGATGCTTCGACGATGTTGCC
508 CCCCCAAT-CACCGAACC-CAATGCCGTCG-TCAGGTTCTTCGGCGA----T-G--G-TG--CCC
* * * * *
344934 CAGGCGAAAAAAAATGCGGCACCAGCACATGCGCGAGCCTAGCATGTCCACCCATAACCCATGGT
560 CAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTTGGT
* *
344999 CCAATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCT
625 CCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
345064 AAGTCAACCCACAAACAAGCGTGCCGGTGTTCAGACGGCCAAAGGGGCAAGATGCGTAAGCCAGG
690 AAGTCAACCCACAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAAGATGCGCAAGCCAGG
* * * * * * *
345129 GATTGGTCGGGTCCCCCACTACGTGGTGCCAATCCTGCTGCAGTAACCCTCGGTCGGGTCCGATC
755 GATCGATCGGGTCCCCCACTACGTGCTGCCAATCCTGCTACAGCAACCCTCAGTCGGGTCCAATC
*
345194 TTAGATTGGGAATGAACTCTGACGCCTAAGCCAACCGACGAAACGA
820 TTAGACTGGGAATGAAC-CTGACGCCT------------------A
* * * *
345240 GCGGGCGGGCGGGCACTATGCCTGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGG
1 --GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGG
** *
345305 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTCTATGGCTTGTAAATT
64 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT-AATT
*
345370 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTC
128 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* * * * *
345435 ACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAAGTTTTT--TAGGAGTTTTGGCCCC
193 ATGA-TTTTCAAAATTTTTACGGTTCAGGATTTTTTTAAAA-TTTTTCAAAAGAGTTTTGGCCCC
* * *
345498 AAACATGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTTG
256 AAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
345563 AAGTGTACAGGATTTTGTGACCATTTGAAAAAGGTATCCCCATTTCAGACACTTTAATGGCTACT
320 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
345628 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGG
385 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
345693 GATAGGGGGCCAATATAAGGACCAAGCACCAGCACCCATCACACATCATGTGCGGACACCCCCCC
450 GATAGGGGGCCAATATAAGG-GCAAGTACCAGCACCCATCGCACATCATGTGC-G-CA------C
* * *
345758 GCCCCCCAATCACCGGAACCCCAATGCCGTTGGTCAGGTTCTCTGGTGATGCTCTGGGGATGGTG
506 ACCCCCCAATCACC-GAA-CCCAATGCCG-TCGTCAGG-T-TC------T--TC-GGCGATGGTG
* *
345823 CCCCAGGCGAAAAAAAATAG-GGCACCAGCACATGCCCGAGCCCAGCATATGCTCCCACAACCCT
557 CCCCAGGCGAAAAAAAAT-GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCT
* * * * * *
345887 CGGTTCGGTTCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGTACTCCGTAT
621 TGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
345952 GCC-AAGTCAACCCATTAAACGAGCGTACGAGCGCTCAGTCGGCTAGAGGGG
686 GCCTAAGTCAACCCA-CAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
346003 TAGGGTACAC
Statistics
Matches: 1401, Mismatches: 165, Indels: 128
0.83 0.10 0.08
Matches are distributed among these distances:
847 11 0.01
848 211 0.15
849 188 0.13
850 52 0.04
855 12 0.01
856 28 0.02
857 1 0.00
860 1 0.00
861 1 0.00
863 1 0.00
864 3 0.00
865 107 0.08
866 127 0.09
867 2 0.00
868 3 0.00
869 2 0.00
889 240 0.17
890 60 0.04
891 174 0.12
892 157 0.11
893 8 0.01
894 2 0.00
895 1 0.00
897 2 0.00
898 1 0.00
899 1 0.00
901 1 0.00
902 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (846 bp):
GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAATTCAT
ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATG
ATTTTCAAAATTTTTACGGTTCAGGATTTTTTTAAAATTTTTCAAAAGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAATCACCG
AACCCAATGCCGTCGTCAGGTTCTTCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCACCCACAACCCTTGGTCCGATCCGATCTTACACTGGGAATGA
ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAACGAGCGTGCGG
GCGCTCAGTCGGCCAGAGGGGCAAGATGCGCAAGCCAGGGATCGATCGGGTCCCCCACTACGTGC
TGCCAATCCTGCTACAGCAACCCTCAGTCGGGTCCAATCTTAGACTGGGAATGAACCTGACGCCT
A
Found at i:345038 original size:26 final size:26
Alignment explanation
Indices: 345009--345061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
344999 CCAATCCGAT
345009 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
345035 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
345061 C
1 C
345062 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:345937 original size:26 final size:26
Alignment explanation
Indices: 345901--345953 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
345891 TCGGTTCGAT
345901 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* * *
345927 CTTAGACTGGGAATGTACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
345953 C
1 C
345954 CAAGTCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:352643 original size:26 final size:26
Alignment explanation
Indices: 352607--352659 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
352597 CTGGTCTAAT
352607 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
352633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
352659 C
1 C
352660 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:358129 original size:26 final size:26
Alignment explanation
Indices: 358093--358143 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
358083 CTGGTCTAAT
358093 CTTACACTGGGAATGAACTCCGTATA
1 CTTACACTGGGAATGAACTCCGTATA
* * *
358119 CTTAGACTGGGATTGAACTTCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
358144 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATA
Found at i:359105 original size:886 final size:882
Alignment explanation
Indices: 357345--368148 Score: 11698
Period size: 897 Copynumber: 12.1 Consensus size: 882
357335 GCCCCTGACA
* ** * *
357345 CCTACGTGCTACCGATCCTGCTACCATAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAAC
1 CCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * *
357410 TCCGTATGCCTAAGCCCACCAACGAAACGAGCGGACGGGTGGGCATTACGTCGGCCAGAGAAGCG
66 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
* * *
357475 GGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAAGCACATCTTCATATTTTTGCCA
131 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* * *
357540 TGCCAATGCCATTTTTATGGCTTGTAAATTCAAAAAATGGACCCTTAAGCCTTCATGTGAAGTTT
196 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
357605 CATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTCTTACGGTTCGAGATTTTT
261 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * ** * *
357670 TTAAAATTTTTTCAAAACGAGTTTTGGCTGCAAACTTAGTAGACGTGATCCTTGTATTTTTCTTG
326 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
357735 GCATGCACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
391 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
357800 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
456 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
357865 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
521 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * ** * **
357930 CCCATCGCACATCAAGTGCGCACATGCCCCCGCCCCCCAATCG-CTGGAAAGCCAATGCCGTCGG
586 CCCATCACACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTC-GG-AACCCAATGCCACCGG
* ** ** * *
357994 TCAGGTTCTCC--G-GC-GATGGCGCCCCAAGCAAAAAAAAATGTGGCACCAGCACATGGCCGAG
649 TCAGGTTCTCCGTGTGCTGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * *
358055 CCCAGCATGTTCACCCGCAACCGTCAGTCTGGTCTAATCTTACACTGGGAATGAACTCCGTATAC
714 CCCAGCATGTGCA--CGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGC
* * * * *
358120 TTAGACTGGGATTGAACTTCGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTCAGCC
777 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA---AGCGGGCGCTCAGCC
* *
358185 GGCCAAAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCC
839 GACCAGAGGGGCAGGATGCGCAAG-CGGGGATCGGTCGGGTCCCC
* *
358230 TCCTACGTGCTGCCGATCCTGCTACTGCAACCCTCAGTCCGGTCTGATGTTAGACTGGGAATGAA
1 -CCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
** * * * *
358295 CTCTATATGCCTAAGCCAACCGATGAAACGAGAGGGCGGGCAGGCACTACGTCGGCCAGAGAGGC
65 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
* * * * *
358360 AGGATGCGCAAGTCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTTTGCC
130 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
* * *
358425 ATGCCAATACCATTTTTATGGCTTTTAAATTCATACAATGGTCACTTAAGCCTTCATGTGAAGTT
195 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * **
358490 TCATGGCAAGATGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTT
260 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* ** * * *
358555 TTTTAAATTTTTTCAGAAGGAGTTTTGGCAACAAACTTGGTAGATGTTATCCTTGTATTTTTTTT
325 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * * * * *
358620 GGTATGTACAAAAACATTCAACTAAAAACTTGAAGTGTACAGGTTTTTGTGACCATTTGAAAAAA
390 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
358685 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
455 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * * ** *
358750 AAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAATTAATAGT
520 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
358815 ACCCATCACACATCATGTGCGCACACCCCCCCGTCCCCCCAATCGTC-GAA-CCAATG-CACCGG
585 ACCCATCACACATCATGTGCGCACACCCCCCCG-CCCCCCAATCGTCGGAACCCAATGCCACCGG
* * *
358877 TCA-GTTCTTCG-G-G-TGATGGTGCCAC-GGTGAGAAAAAAATGCCG-ACCAGGCACATGCCCG
649 TCAGGTTCTCCGTGTGCTGATGGTGCCCCGGGTGA-AAAAAAATGCGGCACCA-GCACATGCCC-
* * *
358936 GAGCCGCAACATGTGCACTGGCAAAACCCTC-GTCCAGTTTTGATCTTACACTGGGAATGGAACT
711 GAGCC-CAGCATGTGCAC--GC--AACCCTCGGTCC-GGTCTGATCTTACACTGGGAAT-GAACT
* * *
359000 CTGTCATGCTTTAGACTAGGATTGAACTCCGTTATAGCCTAAGTCAA-CCACGAAACGAAGCGGG
769 CCGT-ATGC-TTAGACTGGGAATGAACTCCG-TAT-GCCTAAGTCAACCCACGAAACGAAGCGGG
* * * ** *
359064 CGTTCA-CCGACCAGATGGGCAGGATGTGCAAGCCAGGATCGGTC-GGTCTGCC
830 CGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCGGGGATCGGTCGGGTC-CCC
* * * * *
359116 CGT--GTGCGTGCCAATCC-GCT-GC-CAAACCTCAGGT-CGGTCTGATCTTAGACTACGGAATA
1 CCTACGTGC-TGCCGATCCTGCTACCGCAACCCTCA-GTCCGGTCTGATCTTAGACT-GGGAAT-
** * * * *
359175 GAACTCCGTATTGCCATAAGCCAACTAATGAAACGA-----TGGGTGGGCACTTACACCGGCCAG
62 GAACTCCGTA-TGCC-TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAC-TACGCCGGCCAG
* * *
359235 AGAGGCGAGATGCGCAAGCCATGGATCGATAGGGTCGGTAGGTGGGTTAAGGCACATCTTCATAT
124 AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT-GGTAGGTGGGTTTAGGCACATCTTCATAT
*
359300 TTTTGCCCAT-CCAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
188 TTCTG-CCATGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
359364 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTT
251 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* * * *
359429 TGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTAGGTAGACATGATCCTTGT
316 CGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
359494 ACTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
381 A-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
* *
359558 TTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCA
445 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* **
359623 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGACCC
510 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
359688 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCCCCAATCATCGGAACTCTA
575 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAAC-CCA
* * * * *
359753 ATACCGCCAGTCAGGTTCTCCGGTGATGCTACAGCGATGGTGCCTCGGGCGAAAAAAAATGCGGC
639 ATGCCACCGGTCAGGTTCTCC-GTG-TGCT-----GATGGTGCCCCGGGTGAAAAAAAATGCGGC
** * * * * * * *
359818 ACCAGCACATGGTCGAGTCCAGCATGTGCACCCACAACCCTTGATCTGGTCTGATCTTACAGTAG
697 ACCAGCACATGCCCGAGCCCAGCATGTGCA--CGCAACCCTCGGTCCGGTCTGATCTTACACTGG
359883 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-A
760 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAA
* * * * * * *
359947 GCGTGTGGGCGATTAGTC-AGCCAAAGGGGTAGGATGTGCAAGCCGGGGATCGGCCGGGTCCCC
825 GC----GGGCGCTCAGCCGA-CCAGAGGGGCAGGATGCGCAAG-CGGGGATCGGTCGGGTCCCC
* * * * * * ** * * * * **
360010 CCTTCCATTCTGCCAATCCTACTGCCATAACCTTCTGTCTGATCCAATCTTAGACTGGGAATGAA
1 CC-TACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
* *
360075 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGTC--AGA---
65 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
*
360135 --GA-G-GC-A-------A--GATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCC
130 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
* *
360186 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATTCAATGGTCCCTTAAGCCTTCATGTGAACTT
195 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * *
360251 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAATTTTTTACGGTTTGAGATTTT
260 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* *
360316 CTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
325 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
360381 GGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
390 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAA
*
360446 AGTGTCCCCATTTCAGACAC-TTAATGGCTACT-GCAGCAAACCTGTAAAATCTCACATGCTCTT
454 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
360509 TAA-GGGGTGTGAGTTTCTCGAAGTGTGATGAGAGATA-GGGG-CAATTATAA-GGCCAAAGCTA
519 TAAGGGGGTGTGAG-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAA-TATAAGGGCC-AAG-TA
* * * ** *
360570 CCAGCA-CCATCGCACATCATGTACGCCACAACCCCACCGCCTGCAAATCGTCGG-ACCCAATGC
580 CCAGCACCCATCACACATCATGTGCG-CAC-ACCCCCCCGCCCCCCAATCGTCGGAACCCAATGC
* * * * * *
360633 CA-CGATCAGGTGCTCCAATGATGCCTCTGACGATGGTTGGCCTCGGGCGAAAAAAAATACGGCA
643 CACCGGTCAGGTTCTCC-GTG-TG---CT---GATGG-T-GCCCCGGGTGAAAAAAAATGCGGCA
* * * * * * * * * *
360697 -CA-AATAT-CCTGAGCCAAGCATGTTGCACCCACAACCTTGGTCCGATCCGGTATCTTACACTA
698 CCAGCACATGCCCGAGCCCAGCATG-TGCACGCA-ACCCTCGGTCCGGT-CTG-ATCTTACACTG
*
360759 GGAATGAACTCCGTATGCTT--CCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
759 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
360822 ACGTACGGGCACTCAGCCAACCAGAGGGGCAAGATGCGTAAACTGGGGATCGGTCAGGTCTCCC
824 A-G--CGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGC-GGGGATCGGTCGGGTC-CCC
* * * * * * *
360886 CCTGCGTGCTGTCGATCTTGCTATCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
1 CCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * *
360951 TCCATATACCTAAGCCAACAGACGAAATGAGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCA
66 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
* * * *
361016 GGATGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTAATATTTCTACCA
131 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* * *
361081 TGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCGCTTAAGCCTTCATGTGAAGTTT
196 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * * *
361146 CATGCCAAGACAACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTT
261 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * *
361211 TAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
326 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
361276 GCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
391 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* * *
361341 TGTCCCCATTTTAGACATTTTAATGGCTA-TGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTA
456 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * ** *
361405 AGGAGATGTGAGTTCTTAAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
521 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* ** * *
361470 CCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGTTCCCCAATGCCATCGAT
586 CCCATCACACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGG-AACCCAATGCCACCGGT
* * * *
361535 CAGGTTCTCCACCGATGCTCCGAC-GATGGTGCCCCGAGCGAAAAAAAATGCAGCACCACCACAT
650 CAGGTTCT---CCG-TG-T--G-CTGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACAT
* *
361599 GCCCGAGCCCAGCATGTGCAACTGTAA--C-C-AT-CGGTCTGA---T-C-C----AAT---CT-
707 GCCCGAGCCCAGCATGTGC-AC-GCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTC
* *
361646 --TA--C----ACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATG-AGCGTACAGGC
770 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAGCG----GGC
* * *
361702 GCTCAGTCTACCAGAGGGGCAGGATGCGCAAGTCGAGGATCGGTCGGGTCCCCC
831 GCTCAGCCGACCAGAGGGGCAGGATGCGCAAG-CGGGGATCGGTCGGGT-CCCC
* * * * * *
361756 CCTGCATGCTGCCGATCTTGCTACCACAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAAC
1 CCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * *
361821 TCCGTATGCCTAAGCCAACCAATGAAACAAGCAGGCAGGCGGGCACTACGTCGGCCAGGGAGGCG
66 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
* * *
361886 GGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCT
131 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
361951 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
196 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * * *
362016 CGTGGCAAGACGACCCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGATTCGAGATTTTT
261 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTT
* ** *
362081 TTTAAAATTTTTTCAGAATGAGTTTTAACCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
325 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * *
362146 GGCATGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGAACATTTGAAAAAA
390 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* * *
362211 GTGTCCCCATTTAAGACACATTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
455 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * *
362276 AAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAAGTCCAAGTACCGGC
520 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
362340 ACCCATCACACATCATGTTCGCACACTCTCCCGCCCCCCCAATCGTCGGAAACCCAATGCCATCG
585 ACCCATCACACATCATGTGCGCACACCCCCCCG-CCCCCCAATCGTCGG-AACCCAATGCCACCG
* * ** *
362405 G-CTAGGTTCTCCGATGATAATCCGGTAATGAAGCCCCGGGTGAAAAACAATGCGGCACCAGCAC
648 GTC-AGGTTCTCCG-TG----T--GCTGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCAC
* * * * *
362469 ATGCCCAAGCCCAGCATGGGCACTCAAAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAAC
705 ATGCCCGAGCCCAGCATGTGCACGC--AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAAC
* * * * * *
362534 TCCATATGCTCAGATTAGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGG
768 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA---AGCGGG
** * * * *
362599 CGCTCAGTAGGCCAGAGGGGCAGGATGTGCAAGCCAGGGATCAGTCGGGTCCCCC
830 CGCTCAGCCGACCAGAGGGGCAGGATGCGCAAG-CGGGGATCGGTCGGGT-CCCC
* * * * * * * *
362654 CCTATGTGTTGCCGATCCTGCTGCCACAGCCCTCGGTCTGATCTGATCTTAGACTGGGAATGAAC
1 CCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC
*** * *
362719 TCCGTATGCCTAAGCCAATAAACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCTAGAGAGGCG
66 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
*
362784 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCA
131 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* * * *
362849 CGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGGTCCCCTAAGCCTTCATGTAAAGTTT
196 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
362914 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
261 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * *
362979 TAAAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGATGTGA-CCTTGTATTTTTGTTG
326 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * *
363043 GCATACATAAAAAACTTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
391 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* * *
363108 TGTCCCCATTTCAGACACTTTAATGGGTACTGGCGGTAAACCTGTAAAATCTCAAATGCTCTTTA
456 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
363173 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGGCAAGTACCAGCA
521 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * ** *
363238 CCTAT-AGCACATCATGTGCGCACA-CCCCCTGCCCCCTCAATCATCGAAACCCCAATGCTGCCA
586 CCCATCA-CACATCATGTGCGCACACCCCCCCGCCCCC-CAATCGTCGGAA-CCCAATGCCACCG
* * *
363301 GTCATGTTCTCCAGCGATGCTTCGATGATGGTGCCCCGGGTGAAAAAAAAT--AGCACCAGCACA
648 GTCAGGTTCT-C--CG-TG--T-GCTGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACA
* * * * *
363364 TGCTCAAGCCCAGCATGTGCACCCGCAAACCTCGGTTCGGTCTGATCTTACATTGGGAATGAACT
706 TGCCCGAGCCCAGCATGTGCA--CGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACT
* *
363429 CCGTATGCTTAAACTGGGAATGAACTCC--A----T-A-T--------G---C-AAGAGGG-G-T
769 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAGCGGGCGCT
* ** *
363472 -----------A-----A-GATGCACAAGCTGGGGATCGACCAGGTCCCC
834 CAGCCGACCAGAGGGGCAGGATGCGCAAGC-GGGGATCGGTCGGGTCCCC
** ** * * **
363505 CTCTGTGTGCTATCGATCCTACTACCGCAACCCTTAGTCTAGTCTGATCTTAGACTGGGAATGAA
1 C-CTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
* * *
363570 CTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGT
65 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
*
363635 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC
130 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
* * * *
363700 GTGCCAATGCCATTTTTATGGCTAGTAAATTCATACAATGGTCGCTTAAGCCATCATGTGAAGTT
195 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* *
363765 TCATGGCAAGACGACTCGTTTTCTATTTTTCA-TAGTTTTTGAAACTTTTTACGATTCGGGATTT
260 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTCGGGATTT
*
363829 TTTTAAAATTTTTTC--AA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
324 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
363891 TGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGCATTTTGTGACCATTTGAAAAA
389 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
363956 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-AAATTGCTCT
454 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTCT
*
364020 TTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
518 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * **
364085 GCACCCATCGCACATCATTTGTGCACACCCCCTCCCCGCCCCCCAATTGTCGGAACCCTAATGTT
583 GCACCCATCACACATCA--TGTGCGCACACCC-CCCCGCCCCCCAATCGTCGGAACCC-AATGCC
* * * * * *
364150 GCCAGTAAGGTTCTCCGACGTTGCTCCGGTGGTGGTGCCCTGGGTGAAAAAAAAATGCGGCACCA
644 ACCGGTCAGGTTCT-C--CG-TG-T--GCTGATGGTGCCCCGGGTG-AAAAAAAATGCGGCACCA
* * *
364215 GCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACACTTGGAAT
701 GCACATGCCCGAGCCCAGCATGTGCA--CGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAAT
* * *
364280 GAACTTCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATA
764 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA--A-G
* * * * *
364345 CGGGCGTTCA-CCCAGCCAGAGGGGTAGGATGCGCAAGCTGGGGTTCGGTCGAGTCCCC
826 CGGGCGCTCAGCCGA-CCAGAGGGGCAGGATGCGCAAGC-GGGGATCGGTCGGGTCCCC
** * * * * * *
364403 CCTGTGTGGTGTCGATCCTGCTGCTGCAACCCTTAG-CCTGGTCCGATCTTAGACTGGGAATGAA
1 CCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCC-GGTCTGATCTTAGACTGGGAATGAA
* * * * * * * *
364467 CTCCATACGCCTAAGCCAACCGACAAAATGTGCGGACGGGCGGCCACTACACCGGCCAGAGATGG
65 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGA-GG
* * * * *
364532 -GGGATGCGTAGGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGG
129 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
364596 CATGCCAATGCAATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
194 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* * *
364661 TTCATGGCAAGATGACTCGTTTTCGATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTT
259 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTT
* * *
364726 TTTTAAAATTTCTTCAAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
324 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * * * *
364791 TGGCATGCACAAAAAAATTAAGCTTAAAACTCGAAGTGTACTGTATTTTGTGACAATTTGAAAAG
389 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
*
364856 AGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
454 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
364921 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAG
519 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
364986 CACCCATCACACATCATGTGCGTACACCCCCCAC-CCCCTCCAATCATCGGAACCCCAATGCCGC
584 CACCCATCACACATCATGTGCGCACACCCCCC-CGCCCC-CCAATCGTCGGAA-CCCAATGCCAC
* ** * **
365050 CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCATCGGGCGAAAAAAAATGCTACACCAGCA
646 CGGTCAGGTTCTCCG-TG-TGCT-----GATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCA
* * *
365115 CATGCCCGAGCCAAGCATGTGCATCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAA
704 CATGCCCGAGCCCAGCATGTGCA--CGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAA
* * *
365180 CTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTGCGG
767 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA---AGCGG
* * * * * *
365245 GTGCTCAGCTGGCCAGTGGGGCAGGAAGTGCAAGCTGGGGATCGGTCGGGTCCCC
829 GCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGC-GGGGATCGGTCGGGTCCCC
** * ** * * * * * *
365300 CCTGTGTACTATCGATCCTACTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
1 CCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * *
365365 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGTGCACTATGCCGGCCAGAGAGGTG
66 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
* *
365430 GGATGCGCAAGTCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
131 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
365495 TGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
196 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * *
365560 CATGGCGAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTTGGGATTTTT
261 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTT
* * *
365625 TTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATGCTTGTATTTTTGTT
325 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * *
365690 GGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGAGACCATTTGGAAAAA
390 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* * *
365755 GTGTCCCCATTCCAGACACTTTAATCGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTT
455 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * *
365820 ACGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAGGGGCCAAGTGCCAGC
520 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
365885 ACCCATCGCACATCATGT-C-CGCACCCCCCCGTCCCCCCAATCGCCAGAACCCCAATGCCACCG
585 ACCCATCACACATCATGTGCGCACACCCCCCCG-CCCCCCAATCGTCGGAA-CCCAATGCCACCG
* *
365948 GTCAGGTTCTCCGGTGATGCTCCGACAATGGTGCCCCGGGTGAAAAAAAATGCAGCACCAGCACG
648 GTCAGGTTCTCC-GTG-TGCT--G---ATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACA
** * *
366013 TGCCTAAGCCCAGCTTGTGCACCCGCAACCCTTGGTCCGGTCTGATCTTACACTGGGAATGAACT
706 TGCCCGAGCCCAGCATGTGCA--CGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACT
* * *
366078 CCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAACCG-AGCGTGAGGG
769 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAGC----GGG
* * * * ** *
366142 CGCTCAGTCGGCCAGAGGGGTAGGATGCACAAGCCAAGGATCAGTCGGGTCCCCCC
830 CGCTCAGCCGACCAGAGGGGCAGGATGCGCAAG-CGGGGATCGGTCGGGT--CCCC
* * * * * * *
366198 CCTACGTGCTGTCGATCCTGCTACTGCAACCCTCGGTCTGATCTAATCTTAGATTGGGAATGAAC
1 CCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC
* ** * * *
366263 TCCGTATGCCTAAGCTAACCGATTAAACGAGCGGGCAGACGGGCACTACGCCGGTCAGAGAGGCG
66 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
** * * * *
366328 AAATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTTATTTTTCAGCCA
131 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
366393 TGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCATGTGAAGTTT
196 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * ** ***
366458 CATGGCAAGATGACTCGTTTTCTATCTTTCACAATTTTCAAAACTTTTTACGGTTCCATATTTTT
261 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * *
366523 TTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTGGGTAGACATGATCCTTGTATTTTTGTTG
326 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
366588 GCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
391 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* *
366653 TGTCCCCATTTCAAACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
456 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * * *
366718 AGGGGTTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACAAGCA
521 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * ** ** ** *
366783 CCCATCTCACATCATTTGCGCACACCCCCTTGCCCCCCCAATCGTTAGAACCCCAATGCCGTCGA
586 CCCATCACACATCATGTGCGCACACCCCCCCG-CCCCCCAATCGTCGGAA-CCCAATGCCACCGG
* * * *
366848 TCCGATTCTCCGGCGATGCTCCGACGATGGTGCCTCGGGTGAAAAAAAATGCGGCACCAGCACAT
649 TCAGGTTCTCC-GTG-TGCT-----GATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACAT
* * * * * * * * *
366913 GCCCGAGCCAATCATATGCACCCTTAACCTTCGGTTCGATCCGATCTTAGACTGGGAATGAACTC
707 GCCCGAGCCCAGCATGTGCACGC--AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTC
* * * * * *
366978 TGTATCCTTAAACTGGGAATGAACTCCGTATGCCTAAGTTAACCCAGGAAACGAGCGTGCGGGCG
770 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA---AGCGGGCG
* * * * * * *
367043 CTCAGTCGGCCAGAAGGGCAAGATGCCCAAGCTGGGGATC-GACTAGGTCCCC
832 CTCAGCCGACCAGAGGGGCAGGATGCGCAAGC-GGGGATCGGTC-GGGTCCCC
* ** * * * * *
367095 CCTATGTGCTGATGATCCTGCTGCTGCAACCCT-TGATCCGAT-TCGATCTTAGACTAGGAATGA
1 CCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAG-TCCGGTCT-GATCTTAGACTGGGAATGA
* * *
367158 ACTCCGTATGCCTAAGCCATCCGACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGA
64 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
* * * * *
367223 CGGGATGCGCAGGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTAT
129 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-G
* ** ** * * *
367288 CGATAG--GGTGGTAGGTGGGTTTA-GGCACATCT-TCATATTTCTACCATGCCAATGCCATTTT
193 CCAT-GCCAATGCCA--T--TTTTATGG--C-T-TGT-A-A-AT-T--CAT-ACAATG-------
* * * * * * *
367349 TATCTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
235 -GTC-CCT-T-AA-GCCTTC-AT-G----TGAAG---T--T-T-CA------TGGCAAGACGACT
* ** * *
367414 CGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAAATTTTTTCA-
276 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAG
* *
367478 AGAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTCGGCATGCACAAAAAA
341 A-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
367543 ATTTAGCTAAAAACTCGAAGTGTATCA-GATTTTGTGACCATTT-AAAAAAGTGTCCCCATTCCA
405 ATTCAGCTAAAAACTCGAAGTGTA-CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
367606 AACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
469 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
367671 TCTCGAGGTTTGATTAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCAGCCATCACACATC
534 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
**
367736 ATGTGCGCACACCCCCCGTCGCCCACCCAATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCC
599 ATGTGCGCACACCCCCC--CGCCC-CCCAATCGTCGGAA-CCCAATGCCACCGGTCAGGTTCTCC
* * **
367801 GATGATGCTCCGACGATGGTGCCCAGTGT-AAAAAAAATTATGGCACCAGCACATGCCCGAGCCC
660 G-TG-TGCT-----GATGGTGCCCCGGGTGAAAAAAAA-TGCGGCACCAGCACATGCCCGAGCCC
* * ** * * **
367865 AGCATGTGCACCCGTAACCATCGGTCCAATCCGATCTTACATTACGAATGAACTCCGTATGCTTA
717 AGCATGTGCA--CGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTA
* ** * * *
367930 GACTGGGAATGAACTCCGTATACCTAAGTCAACCCATAAAACG-AGCGTGCAAGCGCTCTGCTGG
780 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAGCG-G---GCGCTCAGCCGA
* * * *
367994 CTAGTGGGGCAGGATGCACAAGCCGGGGATCGGTCAGGTCCCC
841 CCAGAGGGGCAGGATGCGCAAG-CGGGGATCGGTCGGGTCCCC
* * * *
368037 CCTTACTTGCTGCTGATCCTGCTACCACAACCCTC-GTTCTGGTCTGATCTTAGACTGGGAATGA
1 CC-TACGTGCTGCCGATCCTGCTACCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGA
* * * * * * *
368101 ACTTCATATGCCGAAGCCAACCGATGAAACGAGCAGACGGGTGGGCAC
64 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAC
368149 ATCATGCGAT
Statistics
Matches: 8471, Mismatches: 1084, Indels: 669
0.83 0.11 0.07
Matches are distributed among these distances:
849 31 0.00
850 206 0.02
851 7 0.00
852 335 0.04
853 52 0.01
854 18 0.00
856 93 0.01
858 2 0.00
862 1 0.00
863 1 0.00
864 1 0.00
866 2 0.00
868 1 0.00
869 8 0.00
870 368 0.04
871 212 0.03
872 157 0.02
874 8 0.00
875 219 0.03
876 69 0.01
877 115 0.01
878 294 0.03
879 61 0.01
880 21 0.00
881 66 0.01
882 69 0.01
883 439 0.05
884 31 0.00
885 43 0.01
886 581 0.07
887 65 0.01
888 35 0.00
889 21 0.00
890 42 0.00
891 21 0.00
892 38 0.00
893 113 0.01
894 451 0.05
895 104 0.01
896 505 0.06
897 1340 0.16
898 1012 0.12
899 267 0.03
900 251 0.03
901 8 0.00
902 6 0.00
903 4 0.00
904 2 0.00
905 1 0.00
906 1 0.00
907 1 0.00
909 3 0.00
910 5 0.00
918 2 0.00
919 2 0.00
920 1 0.00
921 2 0.00
922 3 0.00
923 2 0.00
924 1 0.00
928 4 0.00
931 1 0.00
933 1 0.00
934 1 0.00
935 1 0.00
938 3 0.00
939 1 0.00
940 155 0.02
941 181 0.02
942 210 0.02
943 91 0.01
944 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (882 bp):
CCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCACACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCAATGCCACCGGTC
AGGTTCTCCGTGTGCTGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCC
CAGCATGTGCACGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAGCGGGCGCTCAGCCGACCAGA
GGGGCAGGATGCGCAAGCGGGGATCGGTCGGGTCCCC
Found at i:364304 original size:26 final size:26
Alignment explanation
Indices: 364266--364318 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
364256 CCGGTCCGAT
* * *
364266 CTTACACTTGGAATGAACTTCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
*
364292 CTTAGACTGGGAATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
364318 C
1 C
364319 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:365199 original size:26 final size:26
Alignment explanation
Indices: 365163--365215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
365153 CTGGTCCGAT
365163 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
365189 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
365215 C
1 C
365216 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:366994 original size:26 final size:26
Alignment explanation
Indices: 366958--367008 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
366948 TCGATCCGAT
* *
366958 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAAACTGGGAATGAACTCCGTATC
366984 CTTAAACTGGGAATGAACTCCGTAT
1 CTTAAACTGGGAATGAACTCCGTAT
367009 GCCTAAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATC
Found at i:367305 original size:44 final size:44
Alignment explanation
Indices: 367242--367330 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
367232 CAGGTCATGG
367242 ATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCT
1 ATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCT
*
367286 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
1 ATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCT
367330 A
1 A
367331 CCATGCCAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.35
Consensus pattern (44 bp):
ATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCT
Found at i:367929 original size:26 final size:26
Alignment explanation
Indices: 367900--367950 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
367890 CCAATCCGAT
*
367900 CTTACATTACGAATGAACTCCGTATG
1 CTTACACTACGAATGAACTCCGTATG
* **
367926 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTACGAATGAACTCCGTAT
367951 ACCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTACACTACGAATGAACTCCGTATG
Found at i:372926 original size:26 final size:26
Alignment explanation
Indices: 372897--372949 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
372887 CCGGTTCGAT
*
372897 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
372923 CTTAGACTAGGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
372949 C
1 C
372950 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:373672 original size:26 final size:26
Alignment explanation
Indices: 373643--373698 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
373633 CCGGTCCGAT
373643 CTTACACT-GAGAATGAACTCCGTATG
1 CTTACACTAG-GAATGAACTCCGTATG
*
373669 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
373695 CTTA
1 CTTA
373699 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:374571 original size:26 final size:26
Alignment explanation
Indices: 374542--374594 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
374532 CTGGTCCGAT
374542 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
374568 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
374594 C
1 C
374595 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:378924 original size:25 final size:25
Alignment explanation
Indices: 378874--378924 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
378864 CCGGTCTGAT
*
378874 CTTACACTAGAATGAACTTCGTATG
1 CTTACACTAGAATGAACTCCGTATG
*
378899 CTTAGACTGAGAATGAACTCCG-ATG
1 CTTACACT-AGAATGAACTCCGTATG
378924 C
1 C
378925 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (25 bp):
CTTACACTAGAATGAACTCCGTATG
Found at i:379982 original size:897 final size:888
Alignment explanation
Indices: 377493--379985 Score: 3183
Period size: 897 Copynumber: 2.8 Consensus size: 888
377483 GGCTTGTAAA
* * * * * *
377493 TTCATGATTCTTGAAACCTTTTACGGTTCGAGACTTTTTTTAAATTTTTTCAGAAGGAGTTTTGA
1 TTCACGATTTTTGAAACTTTTTATGGTTCG-GATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGG
*
377558 CCCCAAACTTGGTAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
65 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
377623 CT-AGAAGTGTATAGGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGG
130 CTCA-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
377687 CTACTGGCAGTAAACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
194 CTACT-GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
377752 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
258 TGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * **
377817 CCCCCCGCCCCCCCAATCGTCGAAAACCCAATGCCGCTGGTCAGGTTCTCCGGTAATGCTCCGGT
323 CCCCCCG-CCCCCCAATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGATAATGCTCCGAC
* ** * ** *
377882 GATGGTGCCACGGGCG-AAAAAAATACAGCACCAGCACATGTCTAAGCCCAGCATGTGCACCTGA
387 GATGGTGCCCCGGGCGAAAAAAAATTGA-CACCAGCACATGCCCGAGCCCAGCATGTGCACC-CA
* * * * *
377946 -AACCCTCGGTTTGGTCCGATCTTACACTAGGAATGAACTCCATATGCTTAGACTGGGAGTGAAC
450 CAACCCTCGGTCTGGTCTGATCTTACACTTGGAATGAACTCCGTATGCTTAGACT-GGAATGAAC
** * * *
378010 TATGTATGCCTAAGTCAAACCACGAAACAAGCATGCGGGCTTTCTTTCAGATCCGACCAG-AGGG
514 TCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGG--TGC--TCAG--CCG-CCAGAAGGG
* * ** * * * * *
378074 TTAGGATGGTGGCAAGTCAGGATTTGGTCAGATTCCCCCTGCATGCTGTCGATCCTGCTACTGCA
572 -CAAGAT-G-CACAAGTCGGGA--TCGTCAG-GTCCCCCTACATGCTGTCGATCCTGCTGCTGCA
* *
378139 ACCCTAGGTCCGATCTGATCTTAGACTGGGAATG-ACTCCGTAACGGCCTAAGCCAACTGACGAA
631 ACCCTAGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGT-A-TGCCTAAGCCAACCGACGAA
* * * * *
378203 ACGAGCGGGGCGGGCACTACGTCGGCTAGAGAGGCGGGATCCGTAAGCTATGTATCCCGGTAGGG
694 ACGAGCGGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATCCGCAAGCCATGGAT-CCGATAGGG
378268 TGGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATCTA
758 TGGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATCTA
*
378333 AATTCATACAATGGTCCCTGAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
823 AATTCATACAATGGTCCCTGAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
378398 T
888 T
* * ** ** *
378399 TTCACAATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAAAAATTTTCAAAAGGAGTTTTGG
1 TTCACGATTTTTGAAACTTTTTATGG-TTCGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGG
* * *
378464 -CCTAACACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAA
65 CCCCAA-ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
378528 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGG
129 ACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
378593 CTACTGATAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTATCAAGGTTTGA
194 CTACTG-TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * **
378658 TGAGGGAGAGGGGACCAATATAAGGAACAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
258 TGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
378723 CCCCCCGCCCCCCAATCGCCAGAACCCCAATACCGCCGGTCAGGTTCTCTGATAATGCTCCGAGC
323 CCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGATAATGCTCCGA-C
* * * ** ** * *
378788 AATGGTGCCCCGGACGAAAAAAAAATATGGCACCAGCACATGCCCGAGCGTAGCATGTGGTCTCG
387 GATGGTGCCCCGGGCG-AAAAAAAAT-TGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
* * * *
378853 CAACCCTCGATCCGGTCTGATCTTACAC-TAGAATGAACTTCGTATGCTTAGACTGAGAATGAAC
450 CAACCCTCGGTCTGGTCTGATCTTACACTTGGAATGAACTCCGTATGCTTAGACTG-GAATGAAC
* * * *
378917 TCCG-ATGCCTAAGTCAACCTACGAAACGAGCATGCGGGCGCTCAGCTGGCCAGAGGGGCAAGAT
514 TCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGC-CGCCAGAAGGGCAAGAT
* * * * * *
378981 GCACAAGCCAGGGATCGTCGGGTCCCCCCCTTCATGCTGTCGATCTTGCTGCTGCAACCCTTGTT
578 GCACAAGTC-GGGATCGTCAGGT--CCCCCTACATGCTGTCGATCCTGCTGCTGCAACCCTAGGT
* * * * *
379046 TCGATCCGATCTTAGA-TAGGGAATGAACTCCGCATGCCTAAGCCAACCGATGAAATGAGCGGGC
640 CCGATCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-
* *
379110 GGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT-CGATAGGGT-GGTAGG
701 GGGCGGGCACTACGTCGGCCAGAGAGGCGGGATCCGCAAGCCATGGATCCGATAGGGTGGGTAGG
* * * * *
379173 TGTGTTTAGGCTCATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
766 TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATCTAAATTCATA
* * *
379238 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCATTTTTTATTT
831 CAATGGTCCCTGAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
*
379296 TTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTTTAAATTTTTTTAGAAGGAGTTTTGG
1 TTCACGATTTTTGAAACTTTTTATGGTTC-GGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGG
* *
379361 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCGAAAAA
65 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
**
379426 CTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCGAATTTCAGACACTTTAATGGC
130 CTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
379491 TACTAGTAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTTGAGCTTTGAT
195 TACT-GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
379556 GAGGGACAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGTGCACACCC
259 GAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* **
379621 CCCTCCGCCCCCCAATCGCCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGACGATGCTCCGACG
324 CCC-CCGCCCCCCAATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGATAATGCTCCGACG
* * ** * *
379686 ATGGTGCCCCGGGTGAAAAAAAATGTGACACTAGTTCATGGCCGAGCCCAACATGTGCACCCACA
388 ATGGTGCCCCGGGCGAAAAAAAAT-TGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCACA
*
379751 ACCCTCGGTCTGGTCTGATCTTACACTTGGAATGAACTCCGTATGCTTAGATTGGCAATGAACTC
452 ACCCTCGGTCTGGTCTGATCTTACACTTGGAATGAACTCCGTATGCTTAGACTGG-AATGAACTC
* *
379816 CGTATGCCTAAGTCAACCCATGAAACGAGCCTGCGGGTGCTCAGCCAGCCAGAAGGGCAAGATGC
516 CGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCC-GCCAGAAGGGCAAGATGC
* ** * *
379881 ACAAGTCGGGGATCGACCAGGTCCCCCTACATGCTACCGATCCTGCTGCCGCAACCCTCGGTCC-
580 ACAAGTC-GGGATCG-TCAGGTCCCCCTACATGCTGTCGATCCTGCTGCTGCAACCCTAGGTCCG
* *
379945 AGTCTGATCTTAAACTGAGAATGAACTCCGTATGCCTAAGC
643 A-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
379986 GAAATGATAA
Statistics
Matches: 1364, Mismatches: 192, Indels: 71
0.84 0.12 0.04
Matches are distributed among these distances:
896 66 0.05
897 553 0.41
898 196 0.14
899 15 0.01
900 51 0.04
901 4 0.00
902 4 0.00
904 1 0.00
905 52 0.04
906 332 0.24
907 34 0.02
908 56 0.04
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (888 bp):
TTCACGATTTTTGAAACTTTTTATGGTTCGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CCCGCCCCCCAATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGATAATGCTCCGACGATG
GTGCCCCGGGCGAAAAAAAATTGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCC
TCGGTCTGGTCTGATCTTACACTTGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGCCAGAAGGGCAAGATGCACAAGT
CGGGATCGTCAGGTCCCCCTACATGCTGTCGATCCTGCTGCTGCAACCCTAGGTCCGATCTGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCACTACGT
CGGCCAGAGAGGCGGGATCCGCAAGCCATGGATCCGATAGGGTGGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATCTAAATTCATACAATGGTCCCTGAAG
CCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
Found at i:381028 original size:26 final size:26
Alignment explanation
Indices: 380977--381029 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
380967 CTGGTCTGAT
*
380977 CTTACACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
381003 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
381029 C
1 C
381030 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:381911 original size:26 final size:26
Alignment explanation
Indices: 381861--381911 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
381851 CTGGTTTGAT
* *
381861 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACACCGTATG
*
381887 CTTAGACTGGGAATGAACACCGTAT
1 CTTACACTGGGAATGAACACCGTAT
381912 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACACCGTATG
Found at i:382330 original size:882 final size:889
Alignment explanation
Indices: 380023--382594 Score: 3569
Period size: 896 Copynumber: 2.9 Consensus size: 889
380013 AAAAAATGGG
* * * *
380023 GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTAGTCCGATCTGATCTTACGCT
1 GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCTGGTCTGATCTTACACT
* * * *
380088 GGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATG
66 GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
** * *
380153 AGCATGCGGGTGCTT-AGTCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
131 AGTGTGCGGGCG-TTCAGTCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGATCGGGT-CCC
* * * ** * *
380217 CCCTACGTGTTGCCGATCCTACTACCACAACCCTTGATCCGGTATAATCTTAGACTGGGAATGAA
194 CCCTACGTGCTGCCAATCCTACTGCTGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAA
* *
380282 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGACGGCTAGAGAGGC
259 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC-ACGGCCAGAGAGAC
* * **
380347 GAGATGCGCAAACTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
323 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
*
380412 ATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
388 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * ** * *
380477 TCATGGCAAGACGATTCATTTTTTATTTTTCACGATTTTAAAAACTTTTTAAGGTTCGAGATTTT
453 TCATGGCAAGACGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTT
* * * * * *
380542 TTTAAAATTTTTTCAGAAGGCGTTTTGGCCCCACACCTGGTAGACGTGATCCTCATATTTTTCTT
518 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTATATTTTTGTT
* * * ** *
380607 GGTAGGCACAAAAAAATTTAGCTAAAAACTCAAAGTGTATAGGATTTTGTGACCATTTGAAAAAA
583 GGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* *
380672 GTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTT
648 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
380737 AA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTGCCAGC
713 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
380801 ACCCATTGCACATCATGCGTGCACACCCCCCTGCCCCCTCAATCGCCAGAACCCCAATGCCGCCG
778 ACCCATCGCACATCATGCGCGCACACCCCCCTGCCCCCTCAATCACCAGAACCCAAAT--CGCC-
*
380866 GACAGGTTCTCCAACAATGCTCCGGCGATGGTGCCCCGAGGAAAAAAAAATGCT
840 GACAGG-T-TCCAACAATGCTCCGGCGATGGTGCCCCG-GGAAAAAAAAAT-AT
* * **
380920 GCACCAGCACATGCTCGAGCCCAGCATGTGCACTCGCAATGCTTGGTCTGGTCTGATCTTACACT
1 GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCTGGTCTGATCTTACACT
* * *
380985 GGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
66 GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
* * * * *
381050 A-TCGTGCGGGCGCTCAGTCGGCCAGAGGGGCA-GATGCGTAAGCCAGGGATC-AGTTGGGTCCA
131 AGT-GTGCGGGCGTTCAGTCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGA-TCGGGTCC-
* * * * * * *
381112 CCCCTACGTGCTACCAATCTTGCTGCTGCAAACCTCGATCCAGTCTGATCTTAGACTGGGAGTGA
193 CCCCTACGTGCTGCCAATCCTACTGCTGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGA
* * * * ** *
381177 ACTCCATATGCCTAAGGCAATCGATGAAACGAGTAGGCGGGCGGGCACTACGCCGGCCAGAGAGA
258 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC-ACGGCCAGAGAGA
** * * * * *
381242 TAGGATGCACAAGCCGTGGATCGATAGGGAGGTAGGTGGGTTTAAGCAAATCTTCATATTTTTGC
322 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
381307 CATGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
387 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* *
381372 TTCATGGCAAGATGACTCGTTTTATATTTTTCACGATTTTTGAAGCTTTTTACGGTTCAAGATTT
452 TTCATGGCAAGACGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTT
* * * * *
381437 TTTAAAAATTTTTTTAGAAGGATTTTTAGCCCCAAACTTGGTGGAAGTGATCCTTATATTTTTGT
517 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTATATTTTTGT
381502 TGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACC-TTGTGAAAA
582 TGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATT-TGAAAA
* * * *
381566 AAGTGTCCCCATTTTAGACACTTTCATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTGT
646 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
381631 TTAAGGGGGTCTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
711 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* **
381696 GCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCC-CAATCACTGGAACCCAAAT-GCC-
776 GCACCCATCGCACATCATGCGCGCACACCCCCCTGCCCCCTCAATCACCAGAACCCAAATCGCCG
* *
381757 ATC-GG-T-C-A-AGTTCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATAT
841 A-CAGGTTCCAACAATGCTCCGGCGATGGTGCCCCGGG-AAAAAAAAATAT
* * *
381803 GACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGTTTGATCTTACAC
1 G-CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCTGGTCTGATCTTACAC
* *
381868 TGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACACCGTATCCCTAAGTCAACCCACGAAAT
65 TGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
* * *
381933 GAGTGTGCGGGCGTTCTGCCGGCCAGAGGGGTAGGATGCGCAAGCTGGGGATCGATCGGGT-CCC
130 GAGTGTGCGGGCGTTCAGTCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * * *
381997 CCTACGTGCTGCCAATCCTACTGCTGCAACCCTCAATCTGGTCCAATCTTAGACTAGGAATGAAC
195 CCTACGTGCTGCCAATCCTACTGCTGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAAC
* * * * * * *
382062 TCTGTATGGCTAAGCCAACCAACAAAATGAGCGGGTGGGCGGGCACTACATCGGCCAGAGTGACG
260 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACA-CGGCCAGAGAGACG
** * * *
382127 GGAAACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTAGGCACTTCATCATATTTCTACCA
324 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
382191 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
389 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* ** *
382256 TATGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTTGAAACTTTTTACGATTCAAGATTTTT
454 CATGGCAAGACGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTT
* *
382321 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTG
519 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTATATTTTTGTTG
* *
382386 GCATGCACAAAAAAATTCAGCTAAAAACATGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAA
584 GCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
*
382451 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTA
649 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
382516 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACTAGCA
714 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
*
382580 CCGATCGCACATCAT
779 CCCATCGCACATCAT
382595 ATTTTTTCCA
Statistics
Matches: 1472, Mismatches: 189, Indels: 44
0.86 0.11 0.03
Matches are distributed among these distances:
881 42 0.03
882 353 0.24
883 144 0.10
884 175 0.12
885 23 0.02
886 2 0.00
887 1 0.00
890 3 0.00
891 1 0.00
892 3 0.00
895 19 0.01
896 481 0.33
897 225 0.15
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (889 bp):
GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCTGGTCTGATCTTACACT
GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
AGTGTGCGGGCGTTCAGTCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCC
CTACGTGCTGCCAATCCTACTGCTGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACGGCCAGAGAGACGGG
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
TGGCAAGACGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTT
AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTATATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGCGCGCACACCCCCCTGCCCCCTCAATCACCAGAACCCAAATCGCCGACAGG
TTCCAACAATGCTCCGGCGATGGTGCCCCGGGAAAAAAAAATAT
Found at i:382945 original size:414 final size:415
Alignment explanation
Indices: 382175--383009 Score: 1424
Period size: 414 Copynumber: 2.0 Consensus size: 415
382165 TTAGGCACTT
382175 CATCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
1 CATCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
382240 CCTTCATGTGAAGTTTTATGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTTGAAACTTTTT
66 CCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACAATTTTTGAAACTTTTT
* * **
382305 ACGATTCAAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGAT
131 ACGATTCAAGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACATGAT
382370 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACATGAAGTGTACAGGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACATGAAGTGTACAGGATTTTGT
382435 GACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
261 GACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
382500 TCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAA
326 TCTCAAAAGCTCTTTAAGAGGGAGTGAGTTCTCAAGGTTTGATGAGGGATACGGGGCCAATATAA
* * *
382564 GGGCCAAGTACTAGCACCGATCGCA
391 GGGCCAAGTACCAGAACCCATCGCA
* *
382589 CATCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
1 CATCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
382654 CCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACAATTTTTGAAACTTTTT
66 CCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACAATTTTTGAAACTTTTT
* ***
382719 ACGGTTTGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACATGAT
131 ACGATTCAAGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACATGAT
*
382784 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAGGATTTTG
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACAT-GAAGTGTACAGGATTTTG
*
382848 TGACCATTTGAAAAAAGTGTCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAA
260 TGACCATTTGAAAAAAATGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
382912 AATCTCAAATGCTCTTTAAGAGGGAGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATAT
324 AATCTCAAAAGCTCTTTAAGAGGGAGTGAGTTCTCAAGGTTTGATGAGGGATACGGGGCCAATAT
382977 AAGGGCCAAGTACCAGAACCCATCGCA
389 AAGGGCCAAGTACCAGAACCCATCGCA
383004 CATCAT
1 CATCAT
383010 GTGCGCACAC
Statistics
Matches: 395, Mismatches: 23, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
413 2 0.01
414 352 0.89
415 41 0.10
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (415 bp):
CATCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACAATTTTTGAAACTTTTT
ACGATTCAAGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACATGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACATGAAGTGTACAGGATTTTGT
GACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAAAGCTCTTTAAGAGGGAGTGAGTTCTCAAGGTTTGATGAGGGATACGGGGCCAATATAA
GGGCCAAGTACCAGAACCCATCGCA
Found at i:383207 original size:26 final size:26
Alignment explanation
Indices: 383171--383223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
383161 CTGGTCCGAT
383171 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
383197 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
383223 C
1 C
383224 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:383991 original size:26 final size:26
Alignment explanation
Indices: 383962--384014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
383952 CCGATCCAAT
*
383962 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
383988 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
384014 C
1 C
384015 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:384300 original size:791 final size:795
Alignment explanation
Indices: 382767--384354 Score: 2316
Period size: 791 Copynumber: 2.0 Consensus size: 795
382757 TTTGGCACCA
** *
382767 AACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
1 AACTTGGTAGACATGATCCTTGTATTTTCATTGGCATGCACAAAAAAATTCAGCAAAAAACTCGA
*
382832 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACTG
66 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCGAACACTTTAATGGCTACTG
*
382897 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGAGTGAGTTCTCGAGGTTTGATGAGGG
131 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGAGTGAGTTCTCGAGGTTTGATGAGGG
* * ***
382962 ATACGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCTTTGG
196 ATACGGGGCCAATACAAGGGCCAAGTACCAGAACCCATCACACATCATGTGCGCACACCCTCCCG
*
383027 CCCCCCAATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCTGATGATGGTAC
261 CCCCCCAATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGATGATGGTAC
* * * *
383092 CCCTGGCGAAAAAAGAAATGAGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCTGGAACCCT
326 CCCGGGCGAAAAAAGAAATGAGGCACCAGCACATGCCAGAGCCCAACATGTGCACCCGGAACCCT
* * *
383157 CGGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
391 CGGTCCGATCCAATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
* * ** * *
383222 GCCAAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACTGAGCAGAGGGGCAGGATGTGCAAG
456 GCCAAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAACTGAGCAAAGGGGCAGGATGCGCAAG
* * ** *
383287 CTGGGGATCAGTCAGGTCCCCCCTGTGTGCCACCAATCCTGCTATTGCAACCCTCAGTCTGGTCT
521 CTAGGGATCAGTCAGGTCCCCCCTGCGTGCCACCAATCCTGCTACCGCAACCCTCAGTCAGGTCT
* * * **
383352 GATCTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGAGTGGGCAGGC
586 AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGCGAGCAGGCAGGC
* * *
383417 ACTACGTCAGCCAGAGAGGCGGGATGCGCAAGCCGTGCATCGATAAGGTGGTAGGCGGGTTTAGG
651 ACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAAGGTGGTAGGCGGGTTTACG
* * **
383482 CACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCC
716 CACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCC
383547 ATAAGCCTTCATGTG
781 ATAAGCCTTCATGTG
* *
383562 AACTTGGTAGACGTGATCCTTGTATTTTCATTGGCATGCACAAAAAAATTCAGCAAAAAACTCGT
1 AACTTGGTAGACATGATCCTTGTATTTTCATTGGCATGCACAAAAAAATTCAGCAAAAAACTCGA
383627 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCC-AGACACTTTAATGGCTACT
66 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCGA-ACACTTTAATGGCTACT
* *
383691 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTATA-AGGGTGTGAGTTCTTGAGGTTTGATGAG
130 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTA-AGAGGGAGTGAGTTCTCGAGGTTTGATGAG
* * *
383755 GTATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC-CC
194 GGATACGGGGCCAATACAAGGGCCAAGTACCAGAACCCATCACACATCATGTGCGCACACCCTCC
* *
383819 CG-CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGTGATGGT
259 CGCCCCCCAATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGATGATGGT
* * * *
383883 TCCCCGGGC-AAAAAA-CAATGCA-GCACCAGTACATGCTCAG-GCCCAACATGTGCACCCGTAA
324 ACCCCGGGCGAAAAAAGAAATG-AGGCACCAGCACATGC-CAGAGCCCAACATGTGCACCCGGAA
* *
383944 CCCTCGGTCCGATCCAATCTTACATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
387 CCCTCGGTCCGATCCAATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
* * *
384009 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCT-AGCCAAAGGGGTAGGATGC
452 GTATGCCAAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAACTGAG-CAAAGGGGCAGGATGC
* * *** * * * *
384073 GCAAG-TCAGGGATCGGTCGGGTCCCCCCTGCGTGTTGCCGATCCTTCTGCCGTAACCCTCAGTC
516 GCAAGCT-AGGGATCAGTCAGGTCCCCCCTGCGTGCCACCAATCCTGCTACCGCAACCCTCAGT-
* * *
384137 CAGTTC-AATCTTAGACTGGGAATGAACTTCGTATGCCTACGCCAACCGACAAAACGAGCGGGCA
579 CAGGTCTAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGCGAGCA
* * * * * *
384201 GGCAGGCATTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGG
644 GGCAGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAAGGTGGTAGGCGG
*
384266 GTTTACGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
709 GTTTACGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAA
**
384331 TGGTCCTTTAAGCCTTCATGTG
774 TGGTCCCATAAGCCTTCATGTG
384353 AA
1 AA
384355 GTTTCATGGC
Statistics
Matches: 706, Mismatches: 80, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
790 3 0.00
791 384 0.54
792 13 0.02
793 66 0.09
794 2 0.00
795 237 0.34
796 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (795 bp):
AACTTGGTAGACATGATCCTTGTATTTTCATTGGCATGCACAAAAAAATTCAGCAAAAAACTCGA
AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCGAACACTTTAATGGCTACTG
GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGAGTGAGTTCTCGAGGTTTGATGAGGG
ATACGGGGCCAATACAAGGGCCAAGTACCAGAACCCATCACACATCATGTGCGCACACCCTCCCG
CCCCCCAATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGATGATGGTAC
CCCGGGCGAAAAAAGAAATGAGGCACCAGCACATGCCAGAGCCCAACATGTGCACCCGGAACCCT
CGGTCCGATCCAATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
GCCAAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAACTGAGCAAAGGGGCAGGATGCGCAAG
CTAGGGATCAGTCAGGTCCCCCCTGCGTGCCACCAATCCTGCTACCGCAACCCTCAGTCAGGTCT
AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGCGAGCAGGCAGGC
ACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAAGGTGGTAGGCGGGTTTACG
CACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCC
ATAAGCCTTCATGTG
Found at i:387456 original size:897 final size:895
Alignment explanation
Indices: 385208--399230 Score: 17029
Period size: 897 Copynumber: 15.8 Consensus size: 895
385198 CCATTTTTAT
385208 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
385273 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAACACCCATCGCGCATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
385338 ATGTGCACACACCCCCCTCGCACCCCTAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG
131 ATGTGCGCACACCCCCC-CGC-CCCCCAATCCTCGGAACCCCAATGCCGTCGGTCAGGTTCTC-A
* ** * * * *
385403 GTGATGCTCCGGTGATGGTGCCCCGGGTGAGAAAAAATGTC-GCACTAGCACATGCCCGAGCCTA
193 GCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATG-CGGCACCAGCACATGCCCGAGCCCA
* * * * * *
385467 GCATGTGCAACTGTAACCCTCGGTCCGGTCCAATCTTACACTTGGAATGAACTCCGTATGTTTAG
257 GCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
385532 ACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCCTACGGGCGCTTAGCCGGCC
322 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * ** *
385597 AGAGAGGCAGGATGCATAAGCTGGGGATCGA-CTGGGTCCCCCCCTGCATGCTGTCGATCCTGCT
387 AGAGGGGCAGGATGCACAAGCTGGGGATCGATC-GGGT-CCCCCCTGTGTGCTGCCGATCCTGCT
* * * *
385661 GTCGTAACCCTCGGTCTGGTCTGATCTTAGACTCGGAATGAACTCCGTATGCCTAAGCCAACTGA
450 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
385726 CGAAACGAGCGGGCGGGCGGACACTACACCGGCCAGAGAAGCGGGATGCGCAAGCCGTGGATC-A
515 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
**
385790 -A------TA----GG---A---ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATTTCT
580 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
*
385838 TGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
645 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * ** ** *
385903 TTTTTTTCACGA-TTTTGAAACTTTTTACGGTTCGAGATTTTTAAAAAATTTTTT-TGAAGGAGC
710 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGT
* *
385966 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGTCATGCACAAAACAATTCAGCT
775 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * * * *
386031 AAAAACTCGAAGTGCACAAGATTTTGTGAGCATTTGAAAGAAGTGCCCCCATTTCA
840 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
386087 GACACTTTAATGGCTAC-GGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
386151 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
386216 ATGTGTGCACA-CCCCCTGCCCCCCCAATCATCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGA
131 ATGTGCGCACACCCCCCCG-CCCCCCAATCCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCAG-
* * * * *
386280 TGATGCTCCGATGATGGTGCCCCTGGCGAAAAAAAAAAATGCGGCAGCAGCACATGCCTGAGCCC
194 CGATGCTCCGACGATGGTGCCCCGGGCG---AAAAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
386345 AGCATGTGCACCTGCAACCCTCGGTCTGGTCCGATCATACACTAGGAATGAACTCCATATGCTTA
256 AGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
*
386410 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAG
321 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-G
* * * * * * *
386475 -CAGAGGGGCAGGATGCGCAAGCTGGGGAT-TACTCAGTTCCCCCCTGTGTGCTACCAATCTTGC
385 CCAGAGGGGCAGGATGCACAAGCTGGGGATCGA-TCGGGTCCCCCCTGTGTGCTGCCGATCCTGC
* * * * *
386538 TGTCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCG
449 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *
386603 ACGAAATGAGCGGGCGAGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
514 ACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
* * *
386668 ATAGGGTGGTAGGTAGGTTTAGGAACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGC
579 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
* * * *
386733 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGCAGTTTCATGGCAAGACAATTTGTTTT
644 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
*
386798 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTCTTTTAAAATTTTTTCAAAAGGAG
709 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAG
* * * * *
386863 TTTTGGCCCCAAGCTTGGAAGACATGATCCTTGTATTTTTTTTGGCATGCACAAACAAATTCAGC
774 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * * *
386928 TAAAAACTCAAAGTGCACAGGATTTTGTGACCAATTGAAAAAAGTGTCCCTATTTTA
839 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
386985 GACACTTTAATGGCTGCTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
387050 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCACACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
387115 ATGTGCGCACAACCCCCCCGCCCCCCAATCACT-GGAACCCCAATGCTGTCGGTCAGGTTCTCTA
131 ATGTGCGCAC-ACCCCCCCGCCCCCCAATC-CTCGGAACCCCAATGCCGTCGGTCAGGTTCTC-A
* * * * * * *
387179 GCGATGCTCCGACGATGGTACCCCGAGCGAAAAAAAGTACGACACCAGCACATGCTCGAGTCCAG
193 GCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
387244 CATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACGCTGGGAATGAACTCCATATGCTTAGA
258 CATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
*
387309 CTGGGAATGAACTCCGTATGCCT-AGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
323 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * ** * *
387373 GAGGGGCAGGATGCACAAGCTAGGGATCGGTTGGGTCACCCCCTGTGTGCCACCAATCCTGCTAC
388 GAGGGGCAGGATGCACAAGCTGGGGATCGATCGGGTC-CCCCCTGTGTGCTGCCGATCCTGCTGC
* * ** * ** *
387438 CGGAACCTTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATAACTAAGCCAACCCG-T
452 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCGAC
* * * * * *
387502 GGAACGAGCAGACGGGCGGGCACCACGTCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGAT
516 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* * *
387567 AGGGTGGTAGGTGGGTTTCA-GCACATCTTCATATTTCTACCATGCCAACGCCATTTTTATGGCC
581 AGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
* *
387631 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCGTGGCAGGACGACTCGTTTTC
645 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
*
387696 TATTATTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGT
710 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGT
* * *
387761 TTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCT
775 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
387826 AAAAACTCGAAGTGTACAGGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
840 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
387882 GACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* **
387947 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGGCAGCACCCATCGCACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
388012 ATGTGCGCATACCCCCCCGCCCCCCAATCGC-CGGAACCCCAATGCCGTCGGTCAAGTTCTCCGA
131 ATGTGCGCACACCCCCCCGCCCCCCAATC-CTCGGAACCCCAATGCCGTCGGTCAGGTTCTCAG-
* * * **
388076 CGATGCTCCAACGATGGTGCCCCGGGCAAAAAAAAATGCGGCACTAGCACATGCTTGAGCCCAGC
194 CGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * ** *
388141 ATGTGCACCTGCAACACTCAATCCGGTTCC-ATCTTACATTGGGAATGAACTCCGTATGCTTAGA
259 ATGTGCACCCGCAACCCTCGGTCCGG-TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* * * * * * *
388205 CTGGGAATGAACTCGGTATGCCTAAGT-AAGCCACAAAACGAGCGTGCGGGTGTTCAGCAGACCA
323 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * **
388269 GAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCATGCTGCCGATCCTGCTGC
388 GAGGGGCAGGATGCACAAGCTGGGGATCGATCGGGT-CCCCCCTGTGTGCTGCCGATCCTGCTGC
* * * * * *
388334 TGTAACCATCGATCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
452 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
388399 AAACGACCGGGCGGGCGAGCAATACGCCTGCCAGAGAGGCGGGATGCGCAAGCCGTAGATCGATA
517 AAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
** *
388464 GGGTGGTAGGTTTGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTG
582 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
*
388529 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA
647 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * * *
388594 TTTTTCACAATTTTCGAAACTTTTTACGGTTCGTA-ATTTTTTAAAAATTTTTTCAGAA-GACGT
712 TTTTTCATGATTTTTGAAACTTTTTACGGTTCG-AGATTTTTTTAAAATTTTTTCAAAAGGA-GT
*** * *
388657 TTTGGGTTCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGC-
775 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
388721 ACAAAAATCGAAGTGTACAGGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCA
840 A-AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
388778 GACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *** * * * * *
388843 TCTTGAGGTTTGATGAGGGATAAGGGATGAATATAAAGGCCAAGCACCAGCTCCCATCACACATA
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
388908 ATGTGCGCACACCCCCCTGCCCCCCCAATCGC-CAGAACCCCAATGCCGTAGGTTAGGTTCTCCA
131 ATGTGCGCACACCCCCCCG-CCCCCCAATC-CTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CA
* * ** *
388972 GCGATGCTCCAACGATGGTGCCCCGAGCGAAAAAAAATATGGCACCAGCACATGCCTGAGCCCAG
193 GCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
389037 CATGTGCACCCGCAACCCTCAGTCCGGTCCGATCTTACACT----A-G------GAATG---A-A
258 CATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
*
389087 CT-----T----T--GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
323 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
** * * * * * *
389141 GAGGGGCAGGACACGCAAGCCGGGTATCGATCGGGTCCCCCATGCGTGCTGCCGATCTTGCTGCC
388 GAGGGGCAGGATGCACAAGCTGGGGATCGATCGGGTCCCCCCTGTGTGCTGCCGATCCTGCTGCC
* * * * * *
389206 GCAACCTTTGGCCTAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCGACG
453 GCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
389270 AAATGAGCGGGCGGGCGGGCGCTACGCCGGCCAGAGAGACGGGATGCGTATGCCGTGGACCGATA
517 AAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
*
389335 GGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
582 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
* * *
389400 TAAATTCATACAATGGTCCCTTAAGCCTTAATGTGAAGTTTCATGGCAAGACGACTCATTTTTTA
647 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* ** * * * *
389465 TTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTTTAAATTTTTTCAGAAA-TATTT
712 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA-AAAGGAGTT
** *
389529 TTTACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGCTA
776 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
389594 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTTAAAAAATTGTCCCGATTTCA
841 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
389649 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * * *
389714 TCTTGAGGTTTGATGA-GGATAAGGGG-CAATATCAGGGCCAAGTACTAACACCCATCACACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
389777 ATGTGCGCACA-CCCCCCGCCCCCCCAATCGTCGGAACCCCAAT---GTC-G-CAGG---TCAG-
131 ATGTGCGCACACCCCCCCG-CCCCCCAATCCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCAGC
* * * * *
389832 G-TTCTCTGACGATGGTGCCCCAGGCG-AAAAAAATGCAGCACCAGCACATGCCCGTGCCCAGCA
195 GATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* ** * * *
389895 TGTGCACCCGCAACCCTCAGTCTAGTCCAATCTTACACTGGGAATGAACTCCATATGCTTGGACT
260 TGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
* * * * **
389960 AGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAACGAGCGTGC-GATGCTCAGCCGGCCAGA
325 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* ** *
390024 GGGGTAGGATGCACAAGCTGGGGA-CTGATCGGGTCCCCCCCTACGTGCTGCCGATCCTGCTACC
390 GGGGCAGGATGCACAAGCTGGGGATC-GATCGGGT-CCCCCCTGTGTGCTGCCGATCCTGCTGCC
* * * * * * *
390088 ACAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGATGA
453 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* ** * ** * *
390153 AACGAGAGGTAGGGCAGGCACTATACCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCAATAG
518 AACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
*
390218 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGT
583 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
*
390283 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
648 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
*
390348 TTTTCATGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTTAAAATTTTTT-AGAAGGAGTTTT
713 TTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTT
390411 GGCCCCAAAC-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
778 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
390475 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
843 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
390528 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
390593 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
390658 ATGTGCGCACACCCCCCCGTCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
131 ATGTGCGCACACCCCCCCG--CCCCCCAATCCTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CA
* * * * * *
390723 GCGATGCTCTGGCGATGGTACCCCGGGCAAAAAAAAAATTTC-GCACCAGCACATGCCTGAGCCC
193 GCGATGCTCCGACGATGGTGCCCCGGGC-GAAAAAAAA-TGCGGCACCAGCACATGCCCGAGCCC
* * * * * * *
390787 AGCATGTGTACCCGTAAACCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTG
256 AGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
*
390852 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGAG
321 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-G
* ** * * ** *
390917 -CAGAGGGGCAGGAAGTGCAAG-TCGAGGATC-AGTCAGGTCCCCCCCTGTGTGCTGCTAATCAT
385 CCAGAGGGGCAGGATGCACAAGCT-GGGGATCGA-TCGGGT-CCCCCCTGTGTGCTGCCGATCCT
* * * * * **
390979 GCTGTCACAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTTTGTATGCCTAAGCCAAC
447 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
391044 CGACGAAATGAGCGGGCGGGTGAGCACTATGCCGGCCAGAGAGACAGGATGCGTAAGCAGTGGAT
512 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* *
391109 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTATG
577 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* *
391174 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTAATGTGAAGTTTCATGGCAAGACGACTCATT
642 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * ** * *
391239 TTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTTTAAATTTTTTCAGAAA-
707 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA-AAAG
* * ** *
391303 TATTTTTTACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTC
771 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
391368 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTTAAAAAATTGTCCCGATTTCA
836 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
391428 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
391493 TCTCAAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* **
391558 ATGTGCACACA-CCCCCCGCCATACCAATCGC-CGGAACCCCAATGCC-TACGGTCAGGTTCTC-
131 ATGTGCGCACACCCCCCCGCC-CCCCAATC-CTCGGAACCCCAATGCCGT-CGGTCAGGTTCTCA
* * *
391619 -CGA---T-----GATGATGCCCCGGGTG-AAAAAAATACGGCACCAGCACATGCCCGAGCCCAG
193 GCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * * *
391674 CATGTGCACCCATAACCCTCAGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
258 CATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* ** * *
391739 CTGGGAATGAACTCAGTATGCCTAAGTCAATGCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
323 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
** ** ** * ** ** * *
391804 GAGGGGCAAAATGCACAAGCCAGGGATCGGCCGAGTCCTCGTCTGCATGCTGCCAATCCTGCTGT
388 GAGGGGCAGGATGCACAAGCTGGGGATCGATCGGGTCC-CCCCTGTGTGCTGCCGATCCTGCTGC
* * * * ** *
391869 TGCAACCATCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGAATGCCTAAGCCAACCGACG
452 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
391934 AAATGAGCGGGCGGGCGGGCACTACGCAGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATA
517 AAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* * *
391999 GGGTGGTAGGTGGGTTTAGGGAAATCTTCATATTTCCT-CCGTGCCAATGCCATTTTTATGGCTT
582 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-CTGCCATGCCAATGCCATTTTTATGGCTT
* * * *
392063 ATAAATTCATACCATGGTCCCTTAAGCCTTCATGAGAAG-TTCATGGCAAGACG-CTCGTTTTTT
646 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
392126 ATTTTTCACT-ATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAAACTTTTTCAGATGGAGT
711 ATTTTTCA-TGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGT
* * * * *
392190 TTTGGCCCCAAACATGTTAGACATGATCCTTGTATTTTTGTTGTCGTGCACAAAAAACATTCAGC
775 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGC
*
392255 TAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
839 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
392312 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
392377 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * ** * *
392442 ATGTGCGCACACCCCCCAACCCACCCAATCGTCAAAACCCCAATGCC-ACTGGTCAGGTTCTCCG
131 ATGTGCGCACACCCCCCCGCCC-CCCAATCCTCGGAACCCCAATGCCGTC-GGTCAGGTTCT-CA
* * * ** * * * *
392506 GTGATGCTCCGGCGATGGTACCTTGGGCG-AAAAAAATGTGGCACCACCACATGCCTGAGCTCAG
193 GCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* ** * *
392570 CATGTGCACCTGCAACCCTCGGTTTGGTCCGATCTTACACTGGGAATTAACTCCATATGCTTAGA
258 CATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* * * * * **
392635 CTGCGAATGAACTCCGTATGCTTAACTCAACCCACGAAACGAG-GTACAGGCGCTCAGCCAACCA
323 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
392699 GAGGGGCAGCATGCATAACCTGGGGATCGGTCGGGTCCCCCCCTGTGTGCTGCC-ATTCCTACTG
388 GAGGGGCAGGATGCACAAGCTGGGGATCGATCGGGT-CCCCCCTGTGTGCTGCCGA-TCCTGCTG
** * * * * * *
392763 TTGCAACCCTCGATTTGATTTGATCTCAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
451 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* *
392828 GAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGAATGCGCAAGCCGTGGATCGAT
516 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* * **
392893 AGGGTGCTAGGTGGGTTTTGGCACATCTTCATATTTCTGCCATGCCAATTTCATTTTTATGGCTT
581 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* * *
392958 CTAAATCCATACAATGGTCCCTTAAGCCTT-ATTGTGAAATTTCATGGCAAGACGAC-CAGTTTT
646 GTAAATTCATACAATGGTCCCTTAAGCCTTCA-TGTGAAGTTTCATGGCAAGACGACTC-GTTTT
* * ** *
393021 TTACTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGA-TTTTTTAGAAATTTTTT--AAA-G-
709 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTA-AAATTTTTTCAAAAGGA
** *
393081 GTTTGTGG-CCCAAACTTGGTAGAATTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
773 GTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
393145 GCTAAAAACTCGAAGTGTACAGGATTTTCTGACCA-TTGAAAAAACT-TCCCCATTTCA
837 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
393202 GACACTTTAATTGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 GACACTTTAA-TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
393267 TTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACAT
65 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** * * *
393332 CATGTGCGCCCATCCCCCTCG--CCCC---CC-C--AATCCCAATGCCACCGATCAAGTTCTCCG
130 CATGTGCGCACA-CCCCCCCGCCCCCCAATCCTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CA
* * * * *
393389 GCGATGCTCCGACGATGGTGCCCCGGGCAAAAAAAAATGTGACACCAGTAGATGCCCGA-CCCTA
193 GCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCC-A
* * * * *
393453 GCATGTGCACCCACAACCCTCGGTCTGGTTCGATCATACACTTGGAATGAACTCCGTATGCTTAG
257 GCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * * * *
393518 ACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAATGAACGTGCAGGCGCTCAGCAGGCC
322 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* ** **
393583 AGAGGGCCAGGATGCGTAAG-TCGGGGATC-ACTCGGGTCCCCCCT-TACGCACTGCCGATCCTG
387 AGAGGGGCAGGATGCACAAGCT-GGGGATCGA-TCGGGTCCCCCCTGT--GTGCTGCCGATCCTG
* ** * * *
393645 TTGTTGCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATTAACTCTGTATGCCTAAGCCAACC
448 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
393710 GATGAAACAAGCTGGCGGGCGGGCACTACGTCGGCCAGAGAGGTGGGATGTGCAAGCCGTGGATC
513 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* * **
393775 GATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACCATGCCAATGCCATTTTTATCA
578 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
* * * * *
393840 CTTGGAAATTCATACAATGATCCCTTAAGCCTTCAAGTGAAGTTCCATGGCAAGACGACTCGCTT
643 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
393905 TCTATTTTTCACGATTTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAACTTTTTCAGAAGG
708 TCTATTTTTCATGATTTTT-GAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGG
* * *
393970 AGTTTTGGCCCTAAACTTGGTACACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
772 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
394035 GCTAAAAACTAGAAGTGTAGAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
837 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
394094 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
394159 TCTCGAGGTTTGATGATGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * ** *
394224 ATGTGCGCACACCCCCCCCCCGCCCCCCCAATCATCGGAACCCCAATGTCGCCGAACAAG-T-T-
131 ATGTGCGCACA---CCCCCCCG-CCCCCCAATCCTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * *** * * *
394286 --C--T--T-CGACGATGGTGCCCCAGGCAAAAAAAAAAATGACACCAGCCCATGCTCGAGCCCA
192 AGCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
394344 GCATGTGCACCCACAATCCTCTGTCCGGTCCGATCTTAC-CTAGGGAATTAACTCCATATGCTTA
257 GCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACT-GGGAATGAACTCCGTATGCTTA
* * * * *
394408 GACTGGGAATGAACTTCGGATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGTCGGC
321 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * ** * *
394473 CAGAAGGGTAGGATGCACAAGCCGGGGATCAATCTGGTCCCCCCTACGTGCTGTCGATCCTACTG
386 CAGAGGGGCAGGATGCACAAGCTGGGGATCGATCGGGTCCCCCCTGTGTGCTGCCGATCCTGCTG
* * * * *
394538 CTGCAACCTTCAGTGC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAATCGA
451 CCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * ** *
394602 CAAAACGAGCTGGCGGGCGGGCACTTGGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
515 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* * *
394667 TAGGGTGCTAAGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCT
580 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
*
394732 TGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
645 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
** * * *
394797 TATTTTTCATGA-TTTCAAAACTTTTTATGGTTCAAGATTTTTTTAAATTTTTTTCAGAAA-GAG
710 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA-AAAGGAG
*
394860 TTTT-GCCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGTCATGCACAAAAAAATTCAG
774 TTTTGGCC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * *
394924 CAAAAAACTCGAAGCTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
838 CTAAAAACTCGAAG-TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
** * * *
394983 GACACTTTAATGGCTACTGATAGCAAACTTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGCGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
395048 TTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
395113 ATGTGCGCACA-CCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCATGTTCTCCGAT
131 ATGTGCGCACACCCCCCCGCCCCCCAATCCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCAG-C
* * * **
395177 GATGCTCCGACGATGGTGACCAGTGCGAAAAAAAAATGCGGCACCAGCACATGTTCGAGCCCAGC
195 GATGCTCCGACGATGGTGCCCCGGGCG-AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
395242 ATGTGCACCTGTAA-CC-C--T-C-G---G---TT----T-GG--T---CT--G-AT-CTTACAC
259 ATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * *
395281 TGGTAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGTCGGCTAG
324 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * *
395346 AGGGGCAGCATGCGA-AAG-TCAGGGATCGGTCGGGTCCCTCCT-TGTTCTCTGTCGATCCTACT
389 AGGGGCAGGATGC-ACAAGCT-GGGGATCGATCGGGTCCCCCCTGTG-T-GCTGCCGATCCTGCT
*** * * ** * *
395408 ATTGCAATCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA
450 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
** * ** * * * *
395473 TAAAACAAGCGGGTAGGCGGGCACTACGCCGGCCAAAGAGGCGAGATGTGCAAGTCGTGGATCGA
515 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* *
395538 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTATCGCT
580 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
* * *
395603 TGGAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTCCATAGCAAGACGACTCGTTTTC
645 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
395668 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTGAAAATTTTTTGAAAAGGAG
710 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTT-AAAATTTTTTCAAAAGGAG
* * * *
395733 TTTTAGCCCCAAACTTGGTAAACGCGATCCTTGTATTTTT-TTCGGCATGCACAAAAAAATTCAA
774 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAG
* * * * **
395797 CTAAAAACTGGAAGTGTACAGGATTTTGTGATCATTTGAAAAAGGTGTCCCAAATTTTG
838 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC-CATTTCA
* *
395856 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAAGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
395921 TCTTGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
395986 ATGTGCGCACACCCCCCTCGCCCCCCCAATCGTCGAAACCCCAAT-CCGTCGGTAAGGTTCTCTG
131 ATGTGCGCACACCCCCC-CG-CCCCCCAATCCTCGGAACCCCAATGCCGTCGGTCAGGTTCTC-A
* * * *
396050 GTGATGCTCCGACGATGGTGCCTCGGGC-AAAAAAAATGCGGCCCCAGCCCATGCCCGAGCCCAG
193 GCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * * * *
396114 CATGTGCTCCCACAACCCTCGGTCCGATCTGATCTTACATTGGGAATGAACTCTGAAAGCTTAGA
258 CATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* * * * * * *
396179 CTGGGAATGAACTCTGTATTCCTAAGTTAA-CCAGCGAAACAAGCGTGTGGGCTCTTAGCCGGCC
323 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * *** *
396243 AGAGGGGCAAGATGCACAAGCTGGGGACCAACCGGGTCCCCCCTACCTGCTGCTGAT-CT--T--
387 AGAGGGGCAGGATGCACAAGCTGGGGATCGATCGGGTCCCCCCTGTGTGCTGCCGATCCTGCTGC
* * * * * **
396303 -GCTA--C-CGGTC----C-AATCTTAGACTAGAAATGAACTCCGTATGCCTAAGCCAACCAATT
452 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* *
396359 AAACGA----GCGGGCGGG-A-T---------------GC--G-T----AATCTGTGGATCGATA
517 AAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
*
396396 AGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
582 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
* * ** *
396461 TAAATTCATACAATGGTCCCTTAAGCCTTAATGTGAAGTTTCCTGGCAAGGTGACTCATTTTCTA
647 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * *
396526 TTTTTCACGATTTATGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTT
712 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTT
* *
396591 TAGCCCCAAAC-TGGTAGACGTGATCCTTGTATTTTTTTTTTGGCATGCACAAAAAAATTCAGCT
777 TGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
396655 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
840 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
396711 GACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* ** * *
396776 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGCACCAAGTACTAGCATCCATCGCACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * ** * * * *
396841 ATGTGCGCACACCCCACACACCCCACCAATTGTCAGAACCCCAATGCCGCCGGTTAGGTTCTCCG
131 ATGTGCGCACACCCC-CCCGCCCC-CCAATCCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCAG
* * * * *
396906 ACGATGCTCCGACGATGGTGCCCCCGGTGAAAAAAAATACGACTCCAGCACATGCCCGAGCCCAG
194 -CGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * *
396971 CATGTGCACCCGTAACCCTTGATCCGATCCGATGTTACACTGGGAATGAACTCTGTATGCTTAGA
258 CATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
** * * * *
397036 CTGGGAATGAACTCTATATGCCCAAGTCAACCCACGAAACAAGTGTGCGGGCGCACAGCCGGCCA
323 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* ** * *
397101 AAGGGGCAGGATGCGTAAG-TCGGGGATCGATCGGGTCCCCCCCTGTGTGCTGCCGATCTTGCTA
388 GAGGGGCAGGATGCACAAGCT-GGGGATCGATCGGGT-CCCCCCTGTGTGCTGCCGATCCTGCTG
* * * * *
397165 CTGCAACCCTCAGT-TCGGTCTAATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGA
451 CCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * ** * * *
397229 CGAAATGAGCGGGCGGACGGGCACTATGCTAGCTAGAGAGGCAGGATGCCCAAGCCGTGGATCGA
515 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
*
397294 TAGGGTGGTAGGTGGGTTTACGCACATCTTCATAGTTT-TGCCATGCCAATGCCATTTTTATGGC
580 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCCATGCCAATGCCATTTTTATGGC
* * *
397358 TTGTAAATTTATGCAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTT
644 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
397423 CTATTTTTCATGATTTTTGAAACTTTTTACGGTT-TAGGATTTTTTAAAAATTTTTTCAAAAGGA
709 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAAAAGGA
* * * *
397487 GTTTTGGCCCCACACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTAAG
773 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * *
397552 CTAAAAACTCAAAGTGTACAGGATTTTGTGATCATTTGAAAATAGTATCCCCATTTCA
838 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* ** *
397610 GACACTTTAATGGTTGTTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
397675 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCATCCACCGCACATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** *
397740 ATGTGCGCACACCGCCCCCGCCCCCTAATCAC-CGGAACCCCAAAACCGCCGGTC-GAGTTCTCC
131 ATGTGCGCACACC-CCCCCGCCCCCCAATC-CTCGGAACCCCAATGCCGTCGGTCAG-GTTCT-C
* * *
397803 AGCGATGCTCCGACGATGGTGCCTCGGGTGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCA
192 AGCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* ** * **
397868 GCATGTGCACCCACAACCCTCGGTCCATTCTGATCTTACACTGGGAATGAACTTTGTATGCTTAG
257 GCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * * *
397933 ACTGGGAATGAACTCTGTATGCCTAAGTCAACACTCGAAATGAGCGTGCGGGCGCTCAGCCGGCC
322 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
** * * * ** *
397998 AGAGGGGCAGGATGCGTAAG-TCGAGGATCGACCGGGTCCCCCTTACGTGCTGCCTATCCTGCTG
387 AGAGGGGCAGGATGCACAAGCT-GGGGATCGATCGGGTCCCCCCTGTGTGCTGCCGATCCTGCTG
* * *
398062 CCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGAC
451 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
398127 GAAACGAGCCGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCAAA
516 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* * *
398192 AGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACCATGCCAATGCCATTTTTATGGCTT
581 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* * *
398257 GTAAATTCATACAATGGTCCCTTAAGCCTTAATGTGAAGTTTCCTGGCAAGACAACTCGTTTTCT
646 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * ** *
398322 GTTTTTCATGATTTTTGAAACCTTTTACGATTC-AGGAATTTTTTAAAATTTTTTCTGAAGGATT
711 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAAAAGGAGT
* * *
398386 TTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCT
775 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
398451 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCA
840 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
398507 AACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
398572 TCTCGTGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCATGTACCAGCCCCCGCCCCCCATC
66 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA------G-CACCCATC
* * * * *
398637 ACCCATCATGTGTGCACACCCCCCCGCACCCC-ATCGC-CGGAACCCCAATGCCGCCGGTCAGGT
124 GCACATCATGTGCGCACACCCCCCCGCCCCCCAATC-CTCGGAACCCCAATGCCGTCGGTCAGGT
* * *
398700 TCTCCAGCGATGCTCCTG-TGATGGTGCCCTGGGC-AAAAAAAATGCGGCACCAGCACATGCCTT
188 TCT-CAGCGATGCTCC-GACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCC-C
* * * * * *
398763 GAGCCCAACTTGTGCACTCGCAGCCCTCGAT-CGGTCGGATCTTACACTGGGAATGAACTCCGTA
250 GAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTA
* *
398827 TGCTTAGACTGGGAATGAACTGCGTATGCCTAACTCAACCCACGAAACGAGCGTGCGGGCGCTCA
315 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * ** *
398892 GCCGTCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGCGTCCCCCCTATGTGCTATCGATT
380 GCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATCGATCGGGTCCCCCCTGTGTGCTGCCGATC
* * *** * **
398957 TTGCTACCGCAACCCTTTAATTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
445 CTGCTGCCGCAACCC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
399022 AACCAACAAAACGAGTGGGTGGGCCGGCACTACGCCGGCCAGAGAGGCGAGATGCACAAGCCGTG
509 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
* * *
399087 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTCGTGCCAATGCCATTTTT
574 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* * * *
399152 ATGGCTTGCAAATTCATTCAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTT
639 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
399217 GTTTTCTATTTTTC
704 GTTTTCTATTTTTC
399231 CAGAAAGAGT
Statistics
Matches: 11407, Mismatches: 1410, Indels: 631
0.85 0.10 0.05
Matches are distributed among these distances:
854 22 0.00
855 192 0.02
856 353 0.03
857 188 0.02
858 20 0.00
859 4 0.00
860 3 0.00
861 3 0.00
863 5 0.00
864 4 0.00
865 2 0.00
866 1 0.00
867 6 0.00
868 28 0.00
869 41 0.00
870 107 0.01
871 759 0.07
872 177 0.02
873 257 0.02
874 12 0.00
875 42 0.00
876 97 0.01
877 10 0.00
878 258 0.02
879 373 0.03
880 35 0.00
881 104 0.01
882 323 0.03
883 183 0.02
884 424 0.04
885 732 0.06
886 43 0.00
887 24 0.00
888 115 0.01
889 191 0.02
890 372 0.03
891 459 0.04
892 79 0.01
893 60 0.01
894 31 0.00
895 300 0.03
896 1293 0.11
897 1725 0.15
898 432 0.04
899 442 0.04
900 509 0.04
901 207 0.02
902 325 0.03
903 13 0.00
904 22 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCGCCCCCCAATCCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCAGCG
ATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
GGGCAGGATGCACAAGCTGGGGATCGATCGGGTCCCCCCTGTGTGCTGCCGATCCTGCTGCCGCA
ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
Found at i:388202 original size:26 final size:26
Alignment explanation
Indices: 388173--388225 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
388163 CCGGTTCCAT
*
388173 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
388199 CTTAGACTGGGAATGAACTCGGTATG
1 CTTACACTGGGAATGAACTCCGTATG
388225 C
1 C
388226 CTAAGTAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:391743 original size:26 final size:26
Alignment explanation
Indices: 391707--391759 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
391697 CTGGTCTGAT
*
391707 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCAGTATG
*
391733 CTTAGACTGGGAATGAACTCAGTATG
1 CTTACACTGGGAATGAACTCAGTATG
391759 C
1 C
391760 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCAGTATG
Found at i:392642 original size:26 final size:26
Alignment explanation
Indices: 392603--392658 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
392593 TTGGTCCGAT
* *
392603 CTTACACTGGGAATTAACTCCATATG
1 CTTACACTGCGAATGAACTCCATATG
* *
392629 CTTAGACTGCGAATGAACTCCGTATG
1 CTTACACTGCGAATGAACTCCATATG
392655 CTTA
1 CTTA
392659 ACTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
CTTACACTGCGAATGAACTCCATATG
Found at i:397938 original size:26 final size:26
Alignment explanation
Indices: 397902--397954 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
397892 CCATTCTGAT
*
397902 CTTACACTGGGAATGAACTTTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
397928 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
397954 C
1 C
397955 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:398839 original size:26 final size:26
Alignment explanation
Indices: 398803--398855 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
398793 TCGGTCGGAT
398803 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
398829 CTTAGACTGGGAATGAACTGCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
398855 C
1 C
398856 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:400074 original size:851 final size:846
Alignment explanation
Indices: 397482--402547 Score: 4644
Period size: 889 Copynumber: 5.7 Consensus size: 846
397472 ATTTTTTCAA
* * * *
397482 AAGGAGTTTTGGCCCCACACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAA
1 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAA
* * * * * *
397547 TTAAGCTAAAAACTCAAAGTGTACAGGATTTTGTGATCATTTGAAAATAGTATCCCCATTTCAGA
66 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGTGTCCCCATTTCAGA
* ** * *
397612 CACTTTAATGGTTGTTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
131 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTC
* * * *
397677 TCAAGGTTTGATGAGGGATAGGGGGCCA-ATATAAGGACCAAGTACCAGCATCC-ACCGCACATC
196 TCGAGGTTTGATGAGAGATAGGGGG-CATATATAAGCACCAAGTACCAGCA-CCAATCGCACATC
* **
397740 ATGTGCGCACACCGCCCCCGCCCCCTAATCACCGGAACCCCAAAACCGCCGGTC-GAGTTCTCC-
259 ATGTGCGCACACC-CCCCCGCCCCC-AATCGCCGGAACCCCAATGCCGCCGGTCAG-GTTCTCCG
* ** ** *
397803 AGCGATGCTCCGACGATGGTGCCTCGGGTGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCA
321 A-CGATGCTCCGA-GATGGTGCC-CGGGCGAAAAAAAATGTGGCACCAGCACATGCCTAAGCCTA
** ** * **
397868 GCATGTGCACCCACAACCCTCGGTCCATTCTGATCTTACACTGGGAATGAACTTTGTATGCTTAG
383 GCATGTGCACCCGTAACCCTCGGT-CGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
397933 ACTGGGAATGAACTCTGTATGCCTAAGTCAACACTCGAAATGAGCGTGCGGGCGCTCAGCCGGCC
447 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACC
** * ** * * ** *
397998 AGAGGGGCAGGATGCGTAAGTCGAGGATCGACCGGGTCCCCCTTACGTGCTGCCTATCCTGCTGC
512 AGAGGGGCAGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCCT-GGTGCTATCGATCCTGCTGC
* * * *
398063 CACAACCC-TCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGAC
576 CGCAACCCTTGA-TCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * *
398127 GAAACGAGCCGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCAAA
640 AAAACGAGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGGC-GGATGCGCAAGCCGTGGATCGAT
* * **
398192 AGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACCATGCCAATGCCATTTTTATGGCTT
703 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTT
* * *
398257 GTAAATTCATACAATGGTCCCTTAAGCCTTAATGTGAAGTTTCCTGGCAAGACAACTCGTTTTCT
768 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA--C----TC-
398322 GTTTTTCATGATTTTTGAAACCTTTTACGATTCAGGAATTTTTTAAAATTTTTTCTG
826 G-TTTTC-T-A----T------TTTT-CG---CA-G-------T---A--------G
* * * * *
398379 AAGGATTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAA
1 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAA
* * *
398444 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAAA
66 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGTGTCCCCATTTCAGA
* *
398509 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
131 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTC
* * * ** * * * *
398574 TCGTGGTTTGATGAGGGATAGGGGGCCA-ACATAAGGGCCATGTACCAGCCCCCGCCCCCCATCA
196 TCGAGGTTTGATGAGAGATAGGGGG-CATATATAAGCACCAAGTACCA------G-CACCAATCG
* *
398638 CCCATCATGTGTGCACACCCCCCCGCACCCC-ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
253 CACATCATGTGCGCACACCCCCCCGC-CCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
398702 TCC-AGCGATGCTCCTGTGATGGTGCCCTGGGC-AAAAAAAATGCGGCACCAGCACATGCCTTGA
317 TCCGA-CGATGCTCC-GAGATGGTGCCC-GGGCGAAAAAAAATGTGGCACCAGCACATGCC-TAA
* * * * * * * *
398765 GCCCAACTTGTGCACTCGCAGCCCTCGATCGGTCGGATCTTACACTGGGAATGAACTCCGTATGC
378 GCCTAGCATGTGCACCCGTAACCCTCGGTCGGTCCGATCTTACACTGGGAATGAACTCCGTATGC
* * *
398830 TTAGACTGGGAATGAACTGCGTATGCCTAACTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
443 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
* * * * * **
398895 GTCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGCGTCCCCCCTATGTGCTATCGATTTTG
508 GACCAGAGGGGCAGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCCT-GGTGCTATCGATCCTG
* * * *
398960 CTACCGCAACCCTTTAATTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
572 CTGCCGCAACCC-TTGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
399025 CAACAAAACGAGTGGGTGGGCCGGCACTACGCCGGCCAGAGAGGCGAGATGCACAAGCCGTGGAT
636 CGACAAAACGAGCGGGCGGG-CGGCACTACGCCGGCCAGAGAGGCG-GATGCGCAAGCCGTGGAT
399090 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG-TCGTGCCAATGCCATTTTTAT
699 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCT-GTGCCAATGCCATTTTTAT
* * * *
399154 GGCTTGCAAATTCATTCAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGT
763 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
399219 TTTCTATTTTTC-CAG-A-
828 TTTCTATTTTTCGCAGTAG
* * *
399235 AA-GAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAATA
1 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAA
* * *
399298 TTTAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCCGTTGAAAAAAGTGTCCCCATTTCAGA
66 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGTGTCCCCATTTCAGA
399363 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTC
131 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTC
*
399428 TCGAGGTTTGATGAGAGATAGGGGGCCA-ATATAAGCACCTAGTACCAGCACCAATCGCACATCA
196 TCGAGGTTTGATGAGAGATAGGGGG-CATATATAAGCACCAAGTACCAGCACCAATCGCACATCA
* *
399492 TGTGCGCACACCCCCCCGCCCCCGCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAT
260 TGTGCGCACACCCCCCCG-CCCC-CAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* *
399557 GATTCTCCGACGATGGTGCCTCGGGCGAAAAAAAAATGTGGCACCAACACATGCCTAAGCCTAGC
323 GATGCTCCGA-GATGGTGCC-CGGGCG-AAAAAAAATGTGGCACCAGCACATGCCTAAGCCTAGC
* * * * *
399622 AGGTGCACCCGTAACCCAT-GGTCTGGTCTGATCTTACACTAGGAATGAACTCCATAGGCTTAGA
385 ATGTGCACCCGTAACCC-TCGGTC-GGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* * * * * *
399686 CTGCGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCGTGCGGGAGCCCAACCGGCCA
448 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCA
* * *
399751 GAGGGGCAAGATGCACAAGCCGAGGAAT-AGTCGGGTCCCCCCGTGCGTGCTGTCGATCCTGCTG
513 GAGGGGCAGGATGCACAAGCCGAGG-ATCGGTCGGGTCCCCCC-TG-GTGCTATCGATCCTGCTG
* * * *** * * *
399815 CCACAACCGTTGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATACCGAAGCCAACCGAC
575 CCGCAACCCTTGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* *
399880 AAAACGAGCGGGCGGGCGGCCACTACGCCGCCCAGAGAGGCAGGATGCGCAAGCTGTGGATCGAT
640 AAAACGAGCGGGCGGGCGG-CACTACGCCGGCCAGAGAGGC-GGATGCGCAAGCCGTGGATCGAT
399945 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTT
703 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTT
*
400010 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGATGTTTCATGGCAAGACGACTCGTTTTCT
768 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC-
400075 ATTTTTCACAATTTTTGAAACATTTTACGGTTCAGAATTTTTTAAAAATTTTTTAG
832 -----T----A----T------TTTT-C-G--CAG------------------TAG
400131 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAA
1 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAA
* * *
400196 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAGA
66 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGTGTCCCCATTTCAGA
* * *
400261 CAGTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
131 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTC
* * ** *
400326 TTGAGGTTTGATGAGGGATAGGGGGCATATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
196 TCGAGGTTTGATGAGAGATAGGGGGCATATATAAGCACCAAGTACCAGCACCAATCGCACATCAT
* * ** * * *
400391 GTGCGCACA---CCCCG--ACCAATCGTCAAAACCCCAATGCCGCCGATCAGGTTCTCTGGCGAT
261 GTGCGCACACCCCCCCGCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * **
400451 GCTCCCAGAATGGTGCCCGAGCGAAAAAAAATGTGGCACCAGCACATGCCCCAGCCTAGCATGTG
326 GCTCCGAG-ATGGTGCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCTAAGCCTAGCATGTG
* *
400516 CACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTACGGATGCTTAGACTGGGA
390 CACCCGTAACCCTCGGT-CGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * ** *
400581 ATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGTAGGCGCTAAACCGACCAGAGGGG
454 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGG
* *
400646 CAGGATGTACAAGCCCGA-GATCGGTCGGGTCCCCCCTGGTGTACTATCGATCCTGCTGCTGCAA
519 CAGGATGCACAAG-CCGAGGATCGGTCGGGTCCCCCCTGGTG--CTATCGATCCTGCTGCCGCAA
* *
400710 CCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
581 CCCTTGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACG
* * * *
400775 AGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGTCGGGATGCGCAAGCCGTGGATCGATGGGGTG
646 AGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGGC-GGATGCGCAAGCCGTGGATCGATAGGGTG
* ** *
400840 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATGTAAAT
709 GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAAT
400905 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
774 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
400970 CATGATTTTGGAAACTTTTTACGGTTCTGAATTTTTTTAAAATTTTTCCAG
839 C---------G---C-----A-------G-----------------T--AG
* * * * *
401021 AAGGAGTTTCGACGCCAAACTTGGTAGACATGATCCTT-TATTTTTGTTGGCATGCACAAAAAAA
1 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAA
* * * **
401085 TTCACCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCTTATTTC-GA
66 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGTGTCCCCATTTCAG-
* * *
401149 ACACTTTAATGGCTACTGGCAGCAAAGCTATAAAATCTCTAATGCTCTTTAAG-GGAGTGTGAGT
130 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGG-GTGTGAGT
* ** * * *
401213 TCTCGAGGTTTGATGAGGGATAGGGGGCCA-ATATAAGGGCTAAGTACCAGCACCCATCACACAT
194 TCTCGAGGTTTGATGAGAGATAGGGGG-CATATATAAGCACCAAGTACCAGCACCAATCGCACAT
* * * *
401277 CATGTGCGCAAAGCCCCCCCTTCACCCCCTCAATCGTCGGAACCCCAATGCCGCTGGTCAGGTTC
258 CATGTGCGCACA--CCCCCC--C-GCCCC-CAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * ** *
401342 TTCGATGATGCTCCGACAATGGTGCCTCGAGTGAAAAAAAATACGGCACCAGCACATG-CTCGAG
317 TCCGACGATGCTCCGA-GATGGTGCC-CGGGCGAAAAAAAATGTGGCACCAGCACATGCCT-AAG
* * * ** * *
401406 CCCAGCATGTGCACCCATAACCCTCGGTCCAGTATGATCTTAGACTGGGAATGAACTCCGTACGC
379 CCTAGCATGTGCACCCGTAACCCTCGGT-CGGTCCGATCTTACACTGGGAATGAACTCCGTATGC
** * * * *
401471 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAACGTGCGAGCGCTCAGCC
443 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
** * * *
401536 GACCAGAGGGGCAGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTACCAATCCTG
508 GACCAGAGGGGCAGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCCTG-GTGCTATCGATCCTG
* * * * * **
401601 CGGCTGTAACCCTCGGGT-TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
572 CTGCCGCAACCCT-TGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * **
401665 CGATAAAAC-AGCGGGCGGGAGGGCACTATACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
636 CGACAAAACGAGCGGGCGGG-CGGCACTACGCCGGCCAGAGAGGC-GGATGCGCAAGCCGTGGAT
* *** ** * *
401729 CGATGGGGTGGCT-GGTGGGTTTAGGCACATCTTCATATTTCCACCATACCATTGCCATTTTTAT
699 CGATAGGGTGG-TAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTAT
* * *
401793 GGCTTGTAAATTCATAAAATGGTCCCTTAAGACTTCATGTGAAGTTTCATGGCAAGATGACTCGT
763 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
*
401858 TTTTTATTTTTCATG-ATTTTTGAAACTTTTTCAG
828 TTTCTATTTTTC--GCA-----G--------T-AG
** * ****** *
401892 TTCGGGATTTTTTTAAAAATTTTAGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTT
1 --AAGGA--GTTTT---GGCCCCA-AA--C---TTGG------------TAGACGTGATCCTTGT
* * * * *
401957 ATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAACCTCAAAGTGTACAGGATTTTGTGACCAT
41 ATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAG
402022 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
106 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * * * * **
402087 ATGCTTTTTCAGGGGGTGTGAGTTCTTGACGTTTGATGAGGGATAGGGGGCCA-ATATAAGGGCC
171 ATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGG-CATATATAAGCACC
* * * * * * *
402151 AAATACCACCACCCATCGCACATCATGTG-GCACACCCCCCACCCCCCCAATTGTCGGAACCTCA
235 AAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCC-CGCCCCCAATCGCCGGAACCCCA
* * * * * * *
402215 ATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTGCCCCGGGTGAAAAAAAATATGGT
299 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GAGATGGTG-CCCGGGCGAAAAAAAATGTGGC
* * * * * *
402280 ACCATCACATGCCTGAGCCCACCATGTGCACCCTTAACCCTCGGTCTGGTCCAATCTTACACTGG
362 ACCAGCACATGCCTAAGCCTAGCATGTGCACCCGTAACCCTCGGTC-GGTCCGATCTTACACTGG
* * * * *
402345 GAATGAACTCTGTATGCTTAGTCTGGGAATGAACTCTGTATGCCTAAGTAAACCCATGAAACGAG
426 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* ** ** * *
402410 CGTGCGGGCCCTCAGTC-AGCCAGAGGGGCAGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCC
491 CGTGCGGGCGCTCAACCGA-CCAGAGGGGCAGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCC
* * ** * * *
402474 GGTGTGCTATCGATCCTACTGCTACAACCC-TCAGTCCGGTCTAATCTTAGACTAGGAATGAACT
555 TG-GTGCTATCGATCCTGCTGCCGCAACCCTTGA-TCTGGTCTAATCTTAGACTGGGAATGAACT
*
402538 CCATATGCCT
618 CCGTATGCCT
402548 GGATCACGTC
Statistics
Matches: 3570, Mismatches: 429, Indels: 346
0.82 0.10 0.08
Matches are distributed among these distances:
847 32 0.01
848 4 0.00
849 55 0.02
850 27 0.01
851 373 0.10
852 26 0.01
854 182 0.05
855 35 0.01
856 2 0.00
857 1 0.00
861 1 0.00
865 2 0.00
868 1 0.00
869 4 0.00
871 7 0.00
872 9 0.00
873 3 0.00
875 4 0.00
876 6 0.00
877 3 0.00
878 2 0.00
879 3 0.00
881 6 0.00
882 5 0.00
883 2 0.00
884 4 0.00
887 3 0.00
888 23 0.01
889 625 0.18
890 54 0.02
891 337 0.09
892 13 0.00
893 2 0.00
894 14 0.00
895 7 0.00
896 21 0.01
897 460 0.13
898 210 0.06
899 179 0.05
900 128 0.04
901 366 0.10
902 290 0.08
903 15 0.00
904 24 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (846 bp):
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAA
TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTC
TCGAGGTTTGATGAGAGATAGGGGGCATATATAAGCACCAAGTACCAGCACCAATCGCACATCAT
GTGCGCACACCCCCCCGCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
GCTCCGAGATGGTGCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCTAAGCCTAGCATGTGC
ACCCGTAACCCTCGGTCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCA
GGATGCACAAGCCGAGGATCGGTCGGGTCCCCCCTGGTGCTATCGATCCTGCTGCCGCAACCCTT
GATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGG
GCGGGCGGCACTACGCCGGCCAGAGAGGCGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGCAGTA
G
Found at i:401480 original size:26 final size:26
Alignment explanation
Indices: 401444--401493 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
401434 CCAGTATGAT
401444 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
401470 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
401494 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:402364 original size:26 final size:26
Alignment explanation
Indices: 402335--402387 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
402325 CTGGTCCAAT
402335 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
**
402361 CTTAGTCTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
402387 C
1 C
402388 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:404895 original size:26 final size:26
Alignment explanation
Indices: 404866--404918 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
404856 CCATTCCGAT
*
404866 CTTACACAAGGAATGAACTCCGTATG
1 CTTACACAAGGAATGAACTCCATATG
* **
404892 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACAAGGAATGAACTCCATATG
404918 C
1 C
404919 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTACACAAGGAATGAACTCCATATG
Found at i:405750 original size:26 final size:26
Alignment explanation
Indices: 405721--405773 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
405711 CTGGTCCGAT
* *
405721 CTTACACTAAGAATGAACTCCGTATG
1 CTTACACTAAGAAAGAACTCCATATG
* **
405747 CTTAGACTGGGAAAGAACTCCATATG
1 CTTACACTAAGAAAGAACTCCATATG
405773 C
1 C
405774 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTACACTAAGAAAGAACTCCATATG
Found at i:406674 original size:26 final size:26
Alignment explanation
Indices: 406623--406675 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
406613 CCGGTCCGAT
***
406623 CTTACACTGGGAATGAACTTTGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
406649 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
406675 C
1 C
406676 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:406836 original size:902 final size:893
Alignment explanation
Indices: 405091--411455 Score: 5259
Period size: 897 Copynumber: 6.9 Consensus size: 893
405081 CAGAAAGGGG
* * * *
405091 GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCAA
1 GGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
405156 TGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* *
405221 CATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCGAGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTT
*
405286 TTAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTG
196 TTAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* *
405350 GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
261 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
405415 TGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTTCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
405480 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCA
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
** * * *
405545 CCTTTCACACATCATGTGCGCACACCCCCCCTCGCCCCCCAATCGTCCG-AACCCCAATGCCGTT
456 CCCATCGCACATCATGTGCGCACACCCCCCCGC-CCCCCCAATCGT-CGAAACCCCAATGCCGTC
* * *
405609 GGTCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAGGCGAAAAAAAATGCAGCACTAGCAC
519 GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCGA-GCGAAAAAAAATGCAGCACTAGCAC
* * **
405674 AAGCCCGAGCCCAGCATGTGCACCCGTAACCC-CTGGTCTGGTCCGATCTTACACTAAGAATGAA
583 ATGCCCGAGCCCAGCATGTGCACCCGTAACCCTC-GGTCCGGTCCGATCTTACACTGGGAATGAA
* * * *
405738 CTCCGTATGCTTAGACTGGGAAAGAACTCCATATGCCTAAGTTAACCCCCGAAAC-AACGGTGCG
647 CTTCGTATGCTTAGACTGGGAAAGAACTCCATATGCCTAAGTCAACCCACGAAACGAGC-GTGCG
* * * * *
405802 AGCACTCAGCCGGCCAGAGGGGCAGGATGCATAAGTCGGGGATCAGCCAGGTCCCCCCTTGCGTG
711 GGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGCCGGGTCCCCCCTT-CGTG
* * * * * * *
405867 CTACCGATCTGGCTGTCGCAACCCTCAGTCTGGT-TCGATCTTATACTGAGAATGAACTCCTTAT
775 CTGCCGATCTCGCTGCCACAACCCTCAGTCTGGTCT-AATCTTAGACTG-GAATGAACTCCATAT
*
405931 GCCTAAGCCAACTGACGAAACGAGCAGGCGGGATTGCACTACGTCGGCCAGAGAGAC
838 GCCTAAGCCAACCGACGAAACGAGCAGGCGGG-TTGCACTACGTCGGCCAGAGAGAC
*
405988 GGTATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCC
1 GG-ATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
*
406053 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAG-CTTCATGTGAAGTT
65 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * * *
406117 TCATGGCAAGACGACTCGATTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTTGGGATTT
130 TCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTT
* * *
406182 TTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGCATTTTTGT
194 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTGT
*
406247 TGGCATGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
259 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
406312 AGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTT
324 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
406377 TAAGGCGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAG
389 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
406442 CACCCATCGCACATCATGTGCGCACACCCCACCCCCCGCCCCCCCAATCGTCGAAACCCCAATGC
454 CACCCATCGCACATCATGTGCGCACA---C-CCCCCCGCCCCCCCAATCGTCGAAACCCCAATGC
* * * * * *
406507 CGCCGGTCAGGTTTTCCGGCGATGCTCCGATGATGGTGCACCGAGCGGAAAAAAATACGGCACTA
515 CGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC-CCGAGCGAAAAAAAATGCAGCACTA
* *
406572 ACACATGCCTGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAAT
579 GCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAAT
* * *
406637 GAACTTTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTG
644 GAACTTCGTATGCTTAGACTGGGAAAGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTG
* *
406702 CGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCGCAAG-CTGGGGATCGGCCGGGTCTCCCCCTAT
709 CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTC-GGGGATCGGCCGGGTC-CCCCCT-T
* * * *
406766 -GTGCTGCCGATCTTGCTACCATAACCCTCAGT-TCGGTCTAATCTTAGGCTAGGAATGAACTCC
771 CGTGCTGCCGATCTCGCTGCCACAACCCTCAGTCT-GGTCTAATCTTAGACT-GGAATGAACTCC
* * * * * *
406829 GTATGCCTATGCCAACCGACGAAACGAGCGGGCGGGTGGGCACTACGTCGGCCAGAAAGAAG
834 ATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGT-TGCACTACGTCGGCCAGAGAG-AC
* *
406891 GGATACGCAAGCCGTGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTTTGCCA
1 GGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
406956 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * * *
407021 TATGGCAAGACGACTTGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGATTCGAGATTGTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTT
** * *
407086 TTAAAATTTTCTT-AGAAGGAGTTTTGGCAATAAACTTGGTAGCCATGATCCTTGTATTTTTTTT
196 TTAAAATTTT-TTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
* *
407150 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAG
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
407215 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
407280 AAGGGGGTGTGAGTTCTCGAGGTCTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * *
407345 ACCCATGGCACATCATGTGCGTACACCCCCCCGCCCCCTCAATCGCCGAAACCCCAACGCCGTCG
455 ACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGTCGAAACCCCAATGCCGTCG
* * * * *
407410 GTCAGGTTCTCCAGCGATGCCCCGACGATGGTGCTCGGGCGAAAAAAAATGCGGCACTAGCACAT
520 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCGAGCGAAAAAAAATGCAGCACTAGCACAT
* * * * *
407475 GCCCGAGCCTAGCATGTGCACCCGTAACCCTTGGTCCGATCCAATCTTACACGGGGAATGAACTT
585 GCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTT
* * *
407540 CGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCATGCGGGCG
650 CGTATGCTTAGACTGGGAAAGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
407605 CTCAGTCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGACTGGGTCCCCCCTTTCATGCTGC
715 CTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGCCGGGTCCCCCC-TTCGTGCTGC
* *
407670 CGATC-CGACTGCCACAACCCTCAGTCTGGTCAAATCTTAGACTGGGAATGAACACCATATGCCT
779 CGATCTCG-CTGCCACAACCCTCAGTCTGGTCTAATCTTAGACT-GGAATGAACTCCATATGCCT
* *
407734 AAGCCAACCGACGAAACGAGCAGGCGGGTTGGCATTACG-CAGGCCAGAGAGGC
842 AAGCCAACCGACGAAACGAGCAGGCGGGTT-GCACTACGTC-GGCCAGAGAGAC
** ** * *
407787 GAGACGCGCAATTCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACC
1 G-GATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
407852 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
65 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * *
407917 TCATGGCAAGACCACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTCACGGTTCCG-GATTT
130 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-CGAGATTT
* * * * *
407981 TTTTAAAATTTTTTAAAAAGGAGTTTTGGCCCCAAACTTGGTAGCCGTGATCCTTGTATTTTTGT
194 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTGT
*
408046 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATAC-AGCATTTTGTGACCATTTGAAAA
259 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG-ATTTTGTGACCATTTGAAAA
* *
408110 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCGGCAAACCTGTAAAATCTCAAATGCTCT
323 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
408175 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATTAGGGCCAAGTACCA
388 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * * *
408240 GCACCCATCGCACATCATGTGCGCACA-CCCCCTGTCCCACCAATCGTCGGAACCCTAGTGCCGT
453 GCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGTCGAAACCCCAATGCCGT
* *
408304 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGGCCC-AGACGAAAAAAAAATGCAGCACCAG
518 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT-GCCCGAG-CG-AAAAAAAATGCAGCACTAG
* * * * *
408368 CACATGCTCGATCCCAGCATGTTCACCCGTAACCCTTGGTCTGGTCCGATCTTACACTGGGAATG
580 CACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATG
* * * * * *
408433 AACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAATGAACGTGT
645 AACTTCGTATGCTTAGACTGGGAAAGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * ** * * *
408498 GGGTGCTCAGTCAGCCAGAGGGGCAGGATGCACAAGTCGAGGATTGATCGGGTTCCCCCTACCTG
710 GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGCCGGGTCCCCCCTTCGTG
* * * * * *
408563 CTGCTGAACTTGTTGCCGCAACCCTCAGTCTATTCTGATCTTACACTGAGAATGAACTCCGTATG
775 CTGCCGATCTCGCTGCCACAA-CC-C--TC-A----G----T---CTG-G--T---CT---AAT-
* * * * **
408628 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGAGCGTT-CA-
814 CTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCG-G-GTTGCAC
* *
408691 -AC--CGGACCAGAGGGGC
876 TACGTCGG-CCAGAGAGAC
* * ** * ** ** * * * * *
408707 AGGATGCACAAGTTGGGGATCGACCGGGTACCCCCCTACGTGCTACCGATCCTGTTGCCACAACC
1 -GGATACGCAAGCCGTGGATCGATAGGGT-----GGTA-G-G-T--GGGT--T-TAGGCAC-ATC
* * ** * *** ** * * *** *
408772 CTCAATTTGATCTAATCTTAGAC-TGGGAATG-AACTCCGTATACCTAAGCCAACCGACGAAACG
51 TTC-A--T-AT-T--TC-T-GCCATGCCAATGCCA-TTTTTATGGCT-TG-TAA-ATTC-ATAC-
* * * ** * * * ** * * **
408835 AGCAGGCGGGCGGGCAC-TACGCCGACCA-GAGAGGCTGGATGCGTAAGCCACGGATCAATAGGG
101 A--A--TGGTC---C-CTTAAGCC-TTCATGTGAAGTTTCATG-GCAAG--AC-GA-C--TCGTT
** * * ** * * ** * *
408898 TGGTAGGTGGGGTTTAGGCAC-A-TCTCCATA-TTTTTGCCATGCCAATGCCATTTTTATGGCTT
150 TTCTA--T----TTT--TCACGATTTTTGAAACTTTTTACGGT-TCGA-G--A-TTTT-T---TT
* ** * * *** ** * * * *
408960 GTAAATTCATACA-ATGGTCCCTTAAGC-CTTCATGTGAAGTTTCATGTCA-AGATGACTCGTTT
198 -AAAATTTTTTCAGAAGG-AGTTTTGGCAC--CA----AA-CTT--GGT-AGACATGA-TC--CT
* ** * *** ** ** ***** ** * * *
409022 TCTATTTTTCACGATT--TTTGAAACTTTTTACCATTC-GGGATTTTTTTAAAATTTTTTCAGAA
248 TGTATTTTT---G-TTGGCATG-CAC--AAAAAAATTCAGCTA-AAAACTCGAA--GTGT-ACAA
* * * * * ** ** * ** *** *
409084 GGAGTTTTG-GCCCCAAACTTGATAGACGTGATCCTTGTATTTTTTTGGCA-TGCACAAAACAAT
302 -GA-TTTTGTG-ACC--ATTTGAAAAAAGTG-TCC--CCA--TTTCAGACACTTTA-ATGGCTA-
* * * * * * * **** *
409147 TTAGCTA-AAAACTTG-AAGAGTACAGCATTTTATGAC-CATTTGAAAAAAGTGTCCCCA-TT-T
355 CTGGC-AGCAAACCTGTAA-AAT-C-TCA---AATG-CTC-TTT-AAGGGGGTGT---GAGTTCT
* ** *** * * *** *
409207 C-AGGCACTTTAATG-GCTACT-GGCAACAAACCTGTAAAATCTCAAATACTCCTTAAGGGGGTG
407 CGAGG---TTTGATGAGGGA-TAGGGGGCCAA--TATAAGGGC-CAAGTA--CC---A------G
* * * * * ** * * * ** * **
409269 TGAGTTCTCATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
454 -CA---CCCATCG---CA-CA-TCAT-GTGCG-C---A-CA---CC---CCCCCGC-CCC--CCC
*
409334 ACATCATGTGCGCACACCCCCCGCTCCCCCAATCGCCGGAACCTAAATGCCGCCGGTCAGGTTCT
495 A-ATC--GT-CG---A--------------AA---CC----CC--AATGCCGTCGGTCAGGTTCT
* * * * *** * *
409399 CCAGCGATGCTCCGACAATGGTGCCCCGGGCAAAAAAAAATTTGGCACCAGCACATGCCCAAGCC
530 CCGGCGATGCTCCGACGATGGTG-CCCGAGCGAAAAAAAATGCAGCACTAGCACATGCCCGAGCC
* * * * *
409464 CAGCATGTGTAGCCAG-AACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCT
594 CAGCATGTGCA-CCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTTCGTATGCT
* * * * **
409528 TAGACTGGGAATGACCTCCATATGCCTAAGTCAATCCAC-AGAATGAGCGTGTAGGCGCTCAGCC
658 TAGACTGGGAAAGAACTCCATATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCC
* * ** * * *
409592 GGCCAGAGGGGTAGGATGCACAAG-CTAGGGATCGGTTGGGTCCCCCACTGCATGCTACCGATCA
722 GGCCAGAGGGGCAGGATGCACAAGTC-GGGGATCGGCCGGGTCCCCC-CTTCGTGCTGCCGATC-
* *** ** ** * * * *
409656 T-GCTACTGGAACCCTCAGTCCAGTCCGATCTCACACTAGGAATGAACTCCGTATGCCTAGGCCA
784 TCGCTGCCACAACCCTCAGTCTGGTCTAATCTTAGACT-GGAATGAACTCCATATGCCTAAGCCA
* * * * * *
409720 ACCGACGAAACGAGCGGGCCGGTGGGCACTATGCCAGCCAGAGAG-C
848 ACCGACGAAACGAGCAGGCGGGT-TGCACTACGTCGGCCAGAGAGAC
** *
409766 GGGATGGGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCC
1 -GGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
* *
409831 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGTCTTCATGTGAAGTT
65 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * ** *
409896 TCATGGCAAGACGAGTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTACGGTTTGAGATTTT
130 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTT
* * * * * * * * *
409961 TTTAAAATTTTTTCAAAAGCAGTTTTAGCCCCAAACATGGAAGACGTGATGCTTGTATTTTTTTT
195 TTTAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
*
410026 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAA
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
410091 GTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
410156 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * * *
410221 ACCCATCGTACATCATGTGCG--CACCCCCCCACCCCCCTAATCGTCGGAACCCTAATGCCGCCA
455 ACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGTCGAAACCCCAATGCCGTCG
* * * * **
410284 GTCAGGTTATCC-ACAGGATCCT-CGA-GATGGTGCCCGGGATAAAAAAAAATG-A-C-C-AGCA
520 GTCAGGTTCTCCGGC--GATGCTCCGACGATGGTGCCCGAG-CGAAAAAAAATGCAGCACTAGCA
* * *
410342 CATG-CCGAGCCCAGCAATGTGCACAC--AA-CCTCAGT-CGGT-TGATCTTACACTAGGGAATG
582 CATGCCCGAGCCCAGC-ATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACT-GGGAATG
* * * * *
410401 AAC-TCTTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCATGC
645 AACTTCGTATGCTTAGACTGGGAAAGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGC
* ** *
410463 -GGCGTCGTCAGCC-GCCAGAGGGGCAGGATGCACAAG-CCGGGATCGTTC-GGTCCCCTCTCTA
710 GGGCG-C-TCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGCCGGGTCCCC-C-CTT
* **
410524 CGTGCAT-CCTGATCT-GCTTG-CACAACCCTGAGTCTGGTCCGATCTTAGACTGGGAATGAACT
771 CGTGC-TGCC-GATCTCGC-TGCCACAACCCTCAGTCTGGTCTAATCTTAGACT-GGAATGAACT
* * *
410586 CCGATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGCACTACG-CGGCCAGAGAGGC
832 CC-ATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGTTGCACTACGTCGGCCAGAGAGAC
*
410648 GGATGCGCAAGCCGTGG-TCGATAGGGTGGTAAGGTGGGTTTAGGCACATCTTCATATTT-TGCC
1 GGATACGCAAGCCGTGGATCGATAGGGTGGT-AGGTGGGTTTAGGCACATCTTCATATTTCTGCC
* *
410711 ATGCCAATGCCA-TTTTATGGCGTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTT
65 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
*
410775 TCAT-GCAAGACGACTCGTTTTTTA-TTTTCACGATTTTTTGAAACTTTTTACGGTTCGAGATTT
130 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTCGAGATTT
* * * *
410838 TTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCC-TGTA-TTTTAT
194 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTGT
* *
410901 TGGCATGCACAAAACAATTCAGCCTAAAAACTCAAAGTGTAC-AGCATTTTGTGACCATTTG-AA
259 TGGCATGCACAAAAAAATTCAG-CTAAAAACTCGAAGTGTACAAG-ATTTTGTGACCATTTGAAA
*
410964 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTC
322 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * *
411029 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAAGGGGCCAATATAAGGGCCAAGTACT
387 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * **
411094 AGCACCCATCGCACATCATGTGCGCTCACCCTCCCCCGTCCCCCCAATCGTCGAAACCTTAATGC
452 AGCACCCATCGCACATCATGTGCGCACA-CC-CCCCCGCCCCCCCAATCGTCGAAACCCCAATGC
* * * ** * ** *
411159 CGTTGATTAGGTTCTCCGATGATGCTCCGACGATGGTGCCCTGGGCGAAAAAAAAATGTGGCACC
515 CGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC-GAGCG-AAAAAAAATGCAGCACT
* * * * *
411224 AACACATGCTCGAGCCTAGCATGTGCACCCGCAACCTTCGGTCCGGTCCGATCTTACACTGGGAA
578 AGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAA
* * * * * *
411289 TGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCGT
643 TGAACTTCGTATGCTTAGACTGGGAAAGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * *
411354 GCGGGCGCTCAGTCAGCCAGAGGGGCAGGATGCACAAGCCGAGGATTGGTCAGGTCCCCCCTACG
708 GCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGCCGGGTCCCCCCTTCG
* * *
411419 TGCTACCGATC-CTGCTACCACAACCCTCGGTCTGGTC
773 TGCTGCCGATCTC-GCTGCCACAACCCTCAGTCTGGTC
411456 CGGCGATGGT
Statistics
Matches: 4385, Mismatches: 745, Indels: 680
0.75 0.13 0.12
Matches are distributed among these distances:
876 175 0.04
877 46 0.01
878 92 0.02
879 59 0.01
880 71 0.02
881 71 0.02
882 81 0.02
883 80 0.02
884 29 0.01
885 24 0.01
886 29 0.01
887 15 0.00
888 4 0.00
889 16 0.00
890 28 0.01
891 24 0.01
892 35 0.01
893 78 0.02
894 30 0.01
895 30 0.01
896 77 0.02
897 780 0.18
898 461 0.11
899 210 0.05
901 9 0.00
902 743 0.17
903 55 0.01
904 3 0.00
906 1 0.00
910 1 0.00
913 3 0.00
914 1 0.00
916 1 0.00
919 3 0.00
920 29 0.01
921 5 0.00
922 4 0.00
923 50 0.01
924 4 0.00
925 6 0.00
926 1 0.00
927 4 0.00
928 4 0.00
930 2 0.00
931 2 0.00
932 1 0.00
933 5 0.00
934 5 0.00
935 1 0.00
937 1 0.00
938 2 0.00
939 1 0.00
941 6 0.00
942 15 0.00
943 3 0.00
944 3 0.00
945 1 0.00
946 3 0.00
947 6 0.00
949 1 0.00
950 1 0.00
951 4 0.00
954 14 0.00
955 7 0.00
957 3 0.00
958 1 0.00
959 1 0.00
960 2 0.00
961 4 0.00
962 5 0.00
963 6 0.00
964 8 0.00
965 9 0.00
966 9 0.00
967 16 0.00
968 6 0.00
969 6 0.00
970 1 0.00
971 4 0.00
972 3 0.00
973 2 0.00
974 10 0.00
975 16 0.00
976 13 0.00
977 3 0.00
979 3 0.00
980 10 0.00
981 2 0.00
982 9 0.00
983 2 0.00
984 8 0.00
985 5 0.00
987 17 0.00
988 4 0.00
989 4 0.00
990 5 0.00
991 4 0.00
992 17 0.00
994 4 0.00
995 6 0.00
996 3 0.00
997 9 0.00
998 2 0.00
999 10 0.00
1000 3 0.00
1002 3 0.00
1003 15 0.00
1004 16 0.00
1005 12 0.00
1006 1 0.00
1007 3 0.00
1008 4 0.00
1009 1 0.00
1010 6 0.00
1011 6 0.00
1012 18 0.00
1013 9 0.00
1014 9 0.00
1015 8 0.00
1016 5 0.00
1017 5 0.00
1018 5 0.00
1019 2 0.00
1021 2 0.00
1022 3 0.00
1024 18 0.00
1025 14 0.00
1026 12 0.00
1027 13 0.00
1028 8 0.00
1029 1 0.00
1030 132 0.03
1031 31 0.01
1032 32 0.01
1033 122 0.03
1034 45 0.01
1035 24 0.01
1036 7 0.00
1037 18 0.00
1038 24 0.01
1039 19 0.00
1040 22 0.01
1041 47 0.01
1042 29 0.01
1043 1 0.00
1044 1 0.00
1045 4 0.00
1046 5 0.00
1047 2 0.00
1049 1 0.00
1050 3 0.00
1051 4 0.00
1052 1 0.00
1053 3 0.00
1054 5 0.00
1055 2 0.00
1056 3 0.00
1057 49 0.01
1058 2 0.00
1059 23 0.01
1060 7 0.00
1061 3 0.00
1064 1 0.00
1066 1 0.00
1067 1 0.00
1070 1 0.00
1074 3 0.00
1077 2 0.00
1078 1 0.00
1079 2 0.00
1081 4 0.00
1082 174 0.04
1083 61 0.01
1084 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTT
TTAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGTCGAAACCCCAATGCCGTCGG
TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCGAGCGAAAAAAAATGCAGCACTAGCACATG
CCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTTC
GTATGCTTAGACTGGGAAAGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGCCGGGTCCCCCCTTCGTGCTGCCG
ATCTCGCTGCCACAACCCTCAGTCTGGTCTAATCTTAGACTGGAATGAACTCCATATGCCTAAGC
CAACCGACGAAACGAGCAGGCGGGTTGCACTACGTCGGCCAGAGAGAC
Found at i:408454 original size:26 final size:26
Alignment explanation
Indices: 408418--408470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
408408 CTGGTCCGAT
*
408418 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
408444 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
408470 C
1 C
408471 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:409536 original size:26 final size:26
Alignment explanation
Indices: 409500--409552 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
409490 CTGGTCCAAT
*
409500 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
* *
409526 CTTAGACTGGGAATGACCTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
409552 C
1 C
409553 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:411044 original size:876 final size:880
Alignment explanation
Indices: 408599--411457 Score: 3780
Period size: 896 Copynumber: 3.2 Consensus size: 880
408589 AGTCTATTCT
* *
408599 GATCTTACACTGAGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * **
408664 CCCACGAAACGAGCTTGCGAGCGTTCAACCGGACCAGAGGGGCAGGATGCACAAGTTGGGGATCG
66 CCCACGAAATGAGCGTGCG-GCGCTCAGCCGG-CCAGAGGGGCAGGATGCACAAG-CCGGGATCG
** * * * * **
408729 ACCGGGTACCCCCCTACGTGCTACCGATCCTG-TTGCCACAACCCTCAATTTGATCTAATCTTAG
128 TTCAGGT-CCCCCCTACGTGCTACCGATCCTGCTTG-CACAACCCTCAGTCTGGTCCGATCTTAG
* * *
408793 ACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACGCC
191 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-TGGCACTACGCC
* * * ** *
408858 GACCAGAGAGGCTGGATGCGTAAGCCACGGATCAATAGGGTGGTAGGTGGGGTTTAGGCACATCT
255 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT-GGGTTTAGGCACATCT
*
408923 CCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
319 TCATA-TTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
408988 TTCATGTGAAGTTTCATGTCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
383 TTCATGTGAAGTTTCATG-CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
** * * *
409053 CATTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGATAGACGTGATCC
447 GGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCC
* * * *
409118 TTGTATTTTTTTGGCATGCACAAAACAATTTAGCTAAAAACTTGAAGAGTACAGCATTTTATGAC
512 -TGTATTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAGCATTTTGTGAC
* *
409183 CATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAACAAACCTGTAAAATCT
576 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
409248 CAAATACTCCTTAAGGGGGTGTGAGTTCTCATGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
641 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
409313 CCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGCTCCCCCAATCGCCGGAA-CC
706 CCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCC-CTCCCCCAATCGTCGGAACCC
* * *
409377 TAAATGCCGCCGGTCAGGTTCT-CCAGCGATGCTCCGACAATGGTGCCCCGGGCAAAAAAAAATT
769 T-AATGCCGCCAGTCAGGTTCTCCCAG-GATGCTCCGACGATGGTG-CCCGGG-AAAAAAAAA-A
* * *
409441 TGGCACCAGCACATGCCCAAGCCCAGCATGTGTAGCCAGAACCCTCGGTCTGGTCC
829 TGGCACCAGCACATG-CCGAGCCCAGCATGTGCA-CCACAA-CCTCGGTC-GGTCC
* * *
409497 AATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGACCTCCATATGCCTAAGTCAA
1 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
409562 TCCAC-AGAATGAGCGTGTAGGCGCTCAGCCGGCCAGAGGGGTAGGATGCACAAGCTAGGGATCG
66 CCCACGA-AATGAGCGTG-CGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGC-CGGGATC-
* * * * * ** *
409626 GTT-GGGTCCCCCACTGCATGCTACCGATCATGCTACTG--GAACCCTCAGTCCAGTCCGATCTC
127 GTTCAGGTCCCCC-CTACGTGCTACCGATCCTGCT--TGCACAACCCTCAGTCTGGTCCGATCTT
* * * * *
409688 ACACTAGGAATGAACTCCGTATGCCTAGGCCAACCGACGAAACGAGCGGGCCGGTGGGCACTATG
189 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGT-GGCACTACG
* * *
409753 CCAGCCAGAGA-GCGGGATGGGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATC
253 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
409817 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGT
318 TTCATATTT-TGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * **
409882 CTTCATGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTA
382 CTTCATGTGAAGTTTCAT-GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * * *
409947 CGGTTTGAGATTTTTTTAAAATTTTTTCAAAAGCAGTTTT-AGCCCCAAACATGGAAGACGTGAT
446 CGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGA-CCCCAAACTTGGTAGACGTGAT
* * *
410011 GCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGT
510 -CCTGTA-TTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAGCATTTTGT
* *
410076 GACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
573 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
410141 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
638 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
410206 GGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACCCCCCCAC-CCCCCTAATCGTCGGAA
703 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCC-CTCCCCC-AATCGTCGGAA
* *
410270 CCCTAATGCCGCCAGTCAGGTTATCCACAGGATCCT-CGA-GATGGTGCCCGGGATAAAAAAAAA
766 CCCTAATGCCGCCAGTCAGGTTCTCC-CAGGATGCTCCGACGATGGTGCCCGGGA-AAAAAAAAA
* *
410333 T-G-ACCAGCACATGCCGAGCCCAGCAATGTGCA-CACAACCTCAGTCGGT-T
829 TGGCACCAGCACATGCCGAGCCCAGC-ATGTGCACCACAACCTCGGTCGGTCC
*
410382 GATCTTACACTAGGGAATGAACT-CTTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAG-CA
1 GATCTTACACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
*
410444 ACCCACGAAATGAGCATGCGGCGTCGTCAGCC-GCCAGAGGGGCAGGATGCACAAGCCGGGATCG
65 ACCCACGAAATGAGCGTGCGGCG-C-TCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGATCG
*
410508 TTC-GGTCCCCTCTCTACGTGC-ATCCTGAT-CTGCTTGCACAACCCTGAGTCTGGTCCGATCTT
128 TTCAGGTCCCC-C-CTACGTGCTA-CC-GATCCTGCTTGCACAACCCTCAGTCTGGTCCGATCTT
410570 AGACTGGGAATGAACTCCGATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGCACTACG
189 AGACTGGGAATGAACTCCG-TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGCACTACG
410635 -CGGCCAGAGAGGC-GGATGCGCAAGCCGTGG-TCGATAGGGTGGTAAGGTGGGTTTAGGCACAT
253 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT-AGGTGGGTTTAGGCACAT
* *
410697 CTTCATATTTTGCCATGCCAATGCCA-TTTTATGGCGTGTAAATTCATACAATGGTCCTTTAAGC
317 CTTCATATTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
410761 CTTCATGTGAAGTTTCATGCAAGACGACTCGTTTTTTA-TTTTCACGATTTTTTGAAACTTTTTA
382 CTTCATGTGAAGTTTCATGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTA
410825 CGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATC
446 CGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATC
* *
410890 CTGTATTTTATTGGCATGCACAAAACAATTCAGCCTAAAAACTCAAAGTGTACAGCATTTTGTGA
511 CTGTATTTTTTTGGCATGCACAAAACAATTCAG-CTAAAAACTCGAAGTGTACAGCATTTTGTGA
*
410955 CCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATC
575 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
411019 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAAGGGGCCAATATAAGG
640 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
411084 GCCAAGTACTAGCACCCATCGCACATCATGTGCGCTCACCCTCCCCCGTCCCCCCAATCGTCGAA
705 GCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCC-CCCCC-T-CCCCCAATCGTCGGA
* ** * * *
411149 ACCTTAATGCCG-TTGATTAGGTTCTCCGATGATGCTCCGACGATGGTGCCCTGGGCGAAAAAAA
765 ACCCTAATGCCGCCAG-TCAGGTTCTCCCAGGATGCTCCGACGATGGTGCCC--GG-GAAAAAAA
* * * *
411213 AATGTGGCACCAACACATGCTCGAGCCTAGCATGTGCACCCGCAACCTTCGGTCCGGTCC
826 AA-ATGGCACCAGCACATGC-CGAGCCCAGCATGTGCA-CCACAACC-TCGGT-CGGTCC
*
411273 GATCTTACACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
411338 CCTACGAAATGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGCAGGATGCACAAGCCGAGGATTGG
66 CCCACGAAATGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCG-GGATCGT
** *
411403 TCAGGTCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCTGGTCCG
129 TCAGGTCCCCCCTACGTGCTACCGATCCTGCTTGCACAACCCTCAGTCTGGTCCG
411458 GCGATGGTGC
Statistics
Matches: 1725, Mismatches: 170, Indels: 137
0.85 0.08 0.07
Matches are distributed among these distances:
876 174 0.10
877 49 0.03
878 95 0.06
879 64 0.04
880 63 0.04
881 78 0.05
882 69 0.04
883 87 0.05
884 31 0.02
885 24 0.01
886 32 0.02
887 16 0.01
888 10 0.01
889 14 0.01
890 32 0.02
891 24 0.01
892 33 0.02
893 94 0.05
894 27 0.02
895 232 0.13
896 259 0.15
897 131 0.08
898 84 0.05
899 1 0.00
900 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (880 bp):
GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAATGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGATCGTTC
AGGTCCCCCCTACGTGCTACCGATCCTGCTTGCACAACCCTCAGTCTGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGCACTACGCCGGCCAG
AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
AAGTTTCATGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA
TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTGTATTTTT
TTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAGCATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACCCCCCCCTCCCCCAATCGTCGGAACCCTAATGCCGCCAG
TCAGGTTCTCCCAGGATGCTCCGACGATGGTGCCCGGGAAAAAAAAAATGGCACCAGCACATGCC
GAGCCCAGCATGTGCACCACAACCTCGGTCGGTCC
Found at i:411305 original size:26 final size:26
Alignment explanation
Indices: 411276--411328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
411266 CCGGTCCGAT
411276 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
411302 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
411328 C
1 C
411329 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:414285 original size:26 final size:26
Alignment explanation
Indices: 414256--414308 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
414246 CCAGTCTGAT
414256 CTTACACTAGG-AATGAACTCCATATG
1 CTTACACT-GGTAATGAACTCCATATG
* *
414282 CTTAGACTGGTAATGAACTCCGTATG
1 CTTACACTGGTAATGAACTCCATATG
414308 C
1 C
414309 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTACACTGGTAATGAACTCCATATG
Found at i:415036 original size:898 final size:894
Alignment explanation
Indices: 413295--424684 Score: 9830
Period size: 898 Copynumber: 12.7 Consensus size: 894
413285 TGCCATGGGT
* ** * * * *
413295 GAAAAAAAATAG-G-CACCAGCACATGCCCGAGCCCAGGATGTGCACCCATAACACTTGATCTGG
1 GAAAAAAAAT-GCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGG
*
413358 TCTGATCTTACTCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
65 TCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
413423 CAACCCA-GAAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCCCAAGCCGGGGA
130 CAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG-CGGGGA
** * * * * * * * **
413487 TCGA-CTGGGTCTGCCCTACATGCT-GCAAGTCCTGCTATCGCAACCCT-TGATCCGATCCAATC
193 TCGATC-GGGTCCCCCCTGCATGCTATCGA-TCCTGCTACCGCAACCCTCAG-TCTGGTCTGATC
* * *
413549 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGAACGGGCGGGCGGGCACTA
255 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
* * * *
413614 CGTCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCAATAGGGTGGCAGGTGGGTTTAGGCACA
320 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
413679 TCTTCATATTTCTTCCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CC----
385 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
413739 -CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCAACAATTTTGGAAAGTTT
450 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-ACGATTTTTGAAACTTT
* * * *
413802 TTACGGTTCGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTCGGCCCCAAACTTGGTACACGTG
514 TTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * * * *
413867 ATCCTTGTATTTTTGTTGGCTTGCGCAAAACAATTCAGCTAAAAACTCGAAGTGTATAAGATTTT
578 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* * * *
413932 CTGACGATTTGAAAAAAGCGTCCCCATTTCCGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
643 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
413997 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
708 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
414062 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTC-ACCCCCCCAATCGT
773 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTCGA-CCCCCCAATCGT
* * ** * * * *
414126 CGAAACCCCAATGCCACCATTCTGGTTCTCCGGTGATGGTCCGACGATGGTGTCCCAAGT
836 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG-CCCAAGC
* * * *
414186 GAAAAAAAATGTGACACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAGCCCTCGGTCCAGT
1 GAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
* * *
414251 CTGATCTTACACTAGGAATGAACTCCATATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTC
66 CTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
414316 AACCCACAAAACGAACGTGCGGGCGCTCAACCGACCATAGGGGCATGATGC-CTAAGTCAGGGAT
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCAC-AAG-CGGGGAT
* * *
414380 CGATCGGGTCCCCCCTGCATGCTGTCGATCCTGCTATCGCAACCCTCAGTCTGGTATGATCTTAG
194 CGATCGGGTCCCCCCTGCATGCTATCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAG
* * * *
414445 AATGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGAGGGCACTACGCC
259 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCC
* *
414510 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
324 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
414575 CATATTTCTGCCTTGTCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCT
389 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
414640 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
454 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * ** * *
414705 GTTTGGGATTTTTTAAAATTTTTTTTAGAAAAAGGTTTGGCCCCAAACTTGGTAGATGTGATCCT
519 GTTCGGGATTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
414770 TGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACCCGAAGTGTATAGGATTTTGTGAC
583 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
* *
414835 CATTTGAAAAAAGTGTCCCCATTTCAGTCACTTTAATGGCTACTGGCAGCAAGCCTGTAAAATCT
648 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
414900 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
713 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
414965 CCAAGTACCAGCACCTATTGCACATCATGTGCGCACAACCCCCTCGACCCCCCAATCATCGGAAC
778 CCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCTCGACCCCCCAATCGTCGGAAC
* *
415030 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGAA-C
842 CCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG-CCC-AAGC
** * *
415084 GAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGT
1 GAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
* *
415149 CCGGTCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
66 CTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
415214 AACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCCCAAGCCGAGGATC
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG-CGGGGATC
** * ** * *
415279 GATCGGGTCCCCCCTGTTTGCTATCAATCCTGCTACCGCAA-CCTTGGTCTGATCCGATCTTAGA
195 GATCGGGTCCCCCCTGCATGCTATCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGA
* * * *
415343 CTGGGAATGAACTCTGTACGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTATGCCG
260 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCG
* * *
415408 ACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAAGTGGGTTTAGGCACATCTTC
325 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * * *
415473 ATATTTCTTCCTTGCCAATGCCATTTTAATGGCTTGTAAATTAATACAATGGTCCCTTATGCCTT
390 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * *
415538 CATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTAACAAATTTTAAAACTTTTTACGG
455 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* ** *
415603 TTCGAGATTTTTTTAAAATTTTTTCAGAAGGAG-TTCAGCCCCAAACTTGGTCA-ATGTGATCCT
520 TTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCT
* * *
415666 TGTATTTTTTTTGGCGTGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGAC
583 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
* * *
415731 CATTTGAAAAAATTGTCCCTATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCT
648 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
415796 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
713 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
415861 CCAAGTACCAGCGCCTATCACACATCATGTGCGCACACGCCCC-CCA-CCCCCAATCATCGGAAC
778 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCTCGACCCCCCAATCGTCGGAAC
* * * ** * *
415924 CCCAATGCCGCCAGTCTGGTTCTCCGACGATGCTCCGGTGATGGTGTCCCGAGT
842 CCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG-CCCAAGC
* * * *
415978 GAAAAAAAATGCGACACCAGCACGTGCCCGAGCCCAACATGTGCACCCACAACCCTCGGTCTGGT
1 GAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
** * * * * * * *
416043 CCAATCTTGCACTTGGAATGAACTCCATATGCTTAGACTAGGATTGAACTTCATATGCCTAAGTC
66 CTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * * * * * *
416108 AACCCAAAAAATGAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCCCGAGCCGAGGATC
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG-CGGGGATC
* *** * *
416173 GATCGGATCTGTCCTGCATGCTGTCGATCCTGCTA-C-C-A----CAATCTGGTCTGATCTTAGA
195 GATCGGGTCCCCCCTGCATGCTATCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGA
* * *
416231 CTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCATTACGCCG
260 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCG
* * *
416296 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTGTAGGCACATATTC
325 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
416361 ATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
390 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
416426 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGG
455 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * * * *
416491 TTCAGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCTAAACTTAGTAGATGTGATCATT
520 TTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
416556 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAGAGGATTTTGTGACC
584 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
416621 ATTTG-AAAAAGTTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
649 ATTTGAAAAAAG-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
416685 CAAATGCTTTTTAAAGAGGTGTGAGTTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
713 CAAATGCTCTTTAAGGGGGTGTGAG-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
416750 GCC-AGTACCAGCACCCATCGCACATCATGTGCACACACCACCCCCGCCGCCCCCCATAATTGTC
777 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCTCG--ACCCCCC--AATCGTC
* * * * ** * * ** *
416814 GGAACCCTAATGCCGTCGGTCAGTTTCTCTGGCGATGCTTC-AGTGATGGTGCCCTGGGT
837 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGA-CGATGGTGCCC-AAGC
* ** * *
416873 GAAAAAGAAATGCGGCACCAAAACATGCCCAAGCCCAGCATGTGCACCCGAAACCCTCGGTCCGG
1 GAAAAA-AAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGG
* * *
416938 TCCGATCTTACACTGGGAATGAACTCTGTATGCTTAGA-TAGGGAATGAACTCCGTATG-CTTAG
65 TCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAG
* * ** * * * * * * *** * * *
417001 ACTA-GGAGGTACATCGATGCCATTGTC-GCCTTGTCTTC--CTCTG-AATTTGTG-TGTATAGC
129 TCAACCCACG-A-AACGA-G-C-GTG-CGGGC--G-C-TCAGC-CGGCCAGAGGGGCAGGAT-GC
* **** * * **** ** * * * * *
417060 TCCGAAGTACTGCTCCAT---GTGAAACAAGAAAT--TTTCAAGTTCCTTAGCATCCCTTGC-CC
182 -AC-AAGCGGGGATCGATCGGGTCCCCCCTG-CATGCTATC--GATCC-T-GC-TACC--GCAAC
* * * ** ** *** * * *
417119 CCTCA-T-AGCATC-GAGGCTCCGGCACCTTGGGCCT-TTTTCCCCT-TTCCATCGAGCTCAAAC
237 CCTCAGTCTG-GTCTGA-TCT-TAG-A-C-TGGGAATGAACT-CCGTATGCC-T-AAGC-C-AA-
** * * **** * *** * * * * * *
417179 CCGATCTAGCCACAACCATTTGTAGAATGCTC-AC-CTGTGCTC-TA-A-GC----TCCTCAAAC
290 CCGA-C--GAAACGAGCGGGCG-GGCGGGCACTACGCCG-GC-CAGAGAGGCGGGATGCGCAAGC
* ** * * ** *** * ** * * * * * ** ** ** *
417235 TCCT-TTTGGAGAATGTTCAAAGTGTCTCTAGCCTCTTCGCTCACGTTGTGGAGAGTATCAGACA
349 -CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-TTCATATT-T-CTG-CCAT--GCCA
* * *** * * ** * * * * ** * *
417299 ACTCCCGCTGGGT-TGTCTCG-ATCTCTC-T-CACTCGAT--CTTTAGTCGCCATATGAATTTTC
407 A-TGCC-ATTTTTATGGCTTGTAAAT-TCATACAAT-GGTCCCTTAAGCCTTCATGTGAAGTTTC
** * * * * * ** * **
417358 ATTGCGGCCACCACGACCTCAAGTTCCTCAATTCTCAGTTGATGATTTGGTCCACCATTTGTGGC
468 A-T--GG-CAAGACGA-CTC--GTT-TTCTATT-T---TTCACGATTT-TTGAAAC-TTT-TTAC
** *** ** * * ** * * * *** *
417423 CATCTCATCCATTTTTCTAGCA-CTTCTCA-ACCGTGCTCTGATACC--ACGT-GTCACGGAC-T
518 GGT-TC-GGGATTTTT-TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT-A--GACGT
* * ** *** ** * * * **** * * ***
417482 AAGCTTTCTCTCAACAAGTAATAGACCGTG-AGGCACTTGAATGGCCGCTCCCAAC-C-AAGTCA
577 --G-ATCCT-TGTA-TTTTTTTTG-GCATGCA--CAAAAAAAT-TCAGCTAAAAACTCGAAGT--
* * * * ** * * ** ** *
417544 GCCTTCAATAGATTGATATCTGAACAAAT-AACCATAAGCCCTGGTTAGTCCCA-AGCATTCACA
631 G--TAC-A-GGATT--T-TGTGACCATTTGAA--AAAAG---T-G-T--CCCCATTTCAGACACT
* * ** * * * * * ** ** **
417607 ATAA--G--AC--ACAATATATCCAG-ATCAATCTCAAGCATACAC-ACAAGAAGGCAT-A-TTC
680 TTAATGGCTACTGGCAGCA-AACCTGTA-AAATCTCAA--ATGCTCTTTAAGGGGGTGTGAGTT-
**** * * ** * * * * ** **
417662 GCATCGAGAAAAAGAAAAACACATTGAGGCAACAATCGAGACATTAATCAGGG-TGAGTTTTATT
740 -C-TCGAG-----G----TTTGA-TGAGG-GA-TAGGGGGCCAAT-ATAAGGGCCAAG---TACC
** * * * * ** ** * *
417726 ATAAACGA--GAATCATACATCG-G-G-ACCTCCCACCATC-ACCAGGGCC-A--GGGGGTAGCC
787 AGCACCCATCGCA-CAT-CAT-GTGCGCA-CACCC-CC-TCGACC--CCCCAATCGTCGGAACCC
* ** * ** * * * * *
417782 C-TTG--GTGGGT--GG-CCTAAGCTCGCATAGCAACC-A-G-T-GAG-ACAACC
844 CAATGCCGCCGGTCAGGTTCTCCGAT-G-AT-GC-TCCGACGATGGTGCCCAAGC
* * *** * * **** * * ** ** * **
417826 CAACACTACGCTGCTGGCTTACC--C-CCTTAAAGAGCCTTAGAGAT-TTTA-GAGCTATGCTGC
1 GAA-A-AAAAATGC-GAC--ACCAGCACATGCCCGAGCC-CAG-CATGTGCACCCGCAACCCT-C
* ** * * * * *** * * * * **
417886 TAGTAACCATTATAATGTTTGA-AATGGGGACACTTTTCCTAGCAC-AATGGATCTA-CCCGGCC
58 -GGT--CCGGTCTGAT-CTT-ACACT-GGGA-A--TGAACT--C-CGTAT-GCT-TAGACTGGGA
** * ** * * * * ** * *
417948 ATGGCCTTATACATGGGTGGCTCATGGCAA-CCA--AAGTCTTG-GT-CGTGGCCCTATAAAAGG
109 ATGAAC---T-C-CGTATGCCT-AAGTCAACCCACGAA-ACGAGCGTGCG-GGCGC--T--CA-G
** ** * * *** *** * * ** * * *
418008 TTGGCTCATGACACTGG--GGAT---CGATCGGGTCCCCCCCTGCGTGCTGCC-G-ATCCT-GCT
161 CCGGC-CA-G--AGGGGCAGGATGCACAAGCGGGGATCGATC-GGGTCCCCCCTGCATGCTATCG
* * *** ** * * ** * * * * *
418065 A-CC-ACAACCTTTAGTC-CAATCTGATCTTAGA-CTGGGAAT-GAACTCCGTA-TGCC-TAAGC
221 ATCCTGCTACCGCAACCCTCAGTCTGGTC-T-GATCTTAGACTGGGAAT--GAACT-CCGTATGC
* * ** * * * *
418123 C-AACTGACGAAACGAGCG-GGCGGGCGGGC---A-----CTACGTCGGCCAGAGAGACGGGATG
281 CTAA--G-CCAACCGA-CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
* * * *
418178 TGCAAGCTGTGGATCGATAGGGTGGCAGGTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
342 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
** * * * * *
418243 ATGCTGTTTTTTTGGCTTCTAAACTCATACAATGGTCCGTTAAGCCTTCATGTGAAGTTTAATGG
407 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * * *
418308 CAAGATGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGGTTCGGGATTTTTTAAAA
472 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAA
* *
418373 ATTTTTTC---AGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
536 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
* * *
418435 CATAAAAAAATTCAGCCAAAAAATCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
601 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
418500 CTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGA
666 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
418565 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCAT
731 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* ** * *
418630 CGCACATCATGTGCGCACACCCCCT---------AATCGCCAAAACCCCAACGTCGCCGGTCAGG
796 CGCACATCATGTGCGCACACCCCCTCGACCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGG
*
418686 TTCT-C-----TG----G-CGATGGTGCCGCGAGC
861 TTCTCCGATGATGCTCCGACGATGGTGCC-CAAGC
* * *
418710 GAAAAAAATATG-G-CACCAGCACATGCCCGATCCTAGCATGTGCACCCGTAA-CC-C--T-CGG
1 GAAAAAAA-ATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGG
*
418768 TCTG---TT---C------TG-A--CCGTA--C----ACTGGGAATGAACTTCGTATGCCTAAGT
65 TCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * ** *
418812 CAACCCATGAAATGAGCGTGCGGGCACTTAGCCGGCCAGAAAGGCAGGATGCGCAAGCTGGGGAT
130 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGC-GGGGAT
* * ** *
418877 CG-GCTAGGTCCCCCCCTGTGTGCTATCGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTT
194 CGATC-GGGT-CCCCCCTGCATGCTATCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTT
* * * * *
418941 AGTCTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCACTACA
257 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
*
419006 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATC
322 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * *
419071 TTCATAGTTCTACCATGCCAATGCCATTTTTATGGCTTGTAGATTCATACAATGGTCCCTTAAGC
387 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
419136 CTTCATATGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCACGATTTTTGAAACTTTTTA
452 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* ** * *
419201 TGGTTCGGGATTTTTTTTAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTCATCC
517 CGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
419266 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACATGATTTTGTGA
582 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
419331 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
647 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * *
419396 TGAAATGCCCTTTAAGTGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
712 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
419461 GCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCCCCACCCCCCAATCATTGG
777 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT---CGACCCCCCAATCGTCGG
* * * * *
419526 AACCCCAATGCTGCCGGTCAAGTTCTCTGGTGATGCTCCGGCGATGGTGCCCCAAGC
839 AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG-CCCAAGC
* * * ***
419583 GAAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGATCTAA
1 G-AAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGG
* * *
419648 TTTGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
65 TCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
419713 CAACCCACAAAACGAGTGTACGGGCGCTCAGTCGGCCAAAAGGGCAGGATGCACAAGCCGGGGAT
130 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG-CGGGGAT
* * * * * * * *
419778 CGGTCGGGTACCCCCT--ATGAGCTATTGAT-CTAGCTGCTGCAACCCTCGATTC-AGTCCGATC
194 CGATCGGGTCCCCCCTGCAT--GCTATCGATCCT-GCTACCGCAACCCTC-AGTCTGGTCTGATC
*
419839 TTAGACTGGGAATGAACTCCGTATGCCTACA-CCAACTGACGAAACGAGCGGGCGGGCGGGCACT
255 TTAGACTGGGAATGAACTCCGTATGCCTA-AGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
*
419903 ACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
319 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
419968 ATCTTCATATTTCTACCATGCCAATGCCA-TTTTATGGCTTTTAAATTCATACAATGGTCCTTTA
384 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
420032 AGCCTTCATGTGAAGTTTCATGCCAAGACAACTCCTTTTCTATTTTTTACGATTTTTGAAACTTT
449 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * * *
420097 TTACGCTTTGGGATTTTTTAAAAAATTTTTCAGATGGAGTTTTGGCCCCAAACTTAGTAGACATG
514 TTACGGTTCGGGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
420162 ATCCTTTTATTTTTTTTGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
578 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* * * *
420227 GTGACCAATTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTCGCAGCAAACTTGTAA
643 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
420292 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATAT
708 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
420357 AAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCGGCCCTCGCCAATCG-
773 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGACCC-C-CCAATCGT
* * * ** *
420421 CTGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGG
836 C-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCAAGC
* ** * * *
420481 GGAAAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTTGGTCTGGT
1 GAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
* * *
420546 CTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATTAACCCCGTATGCCTAAGTC
66 CTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
420611 AACCCATGAAACGGGCATGCGGGCGCTCATCCTGCCAAAGGGGCAAGATGCACAAGCCGGGGATC
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG-CGGGGATC
** * * * * * *
420676 GGCCGGGTCCCCCCTACATGCTA-CAGATCCTGTTGCCACAACCCTCAATCCGGTCTGATCTTAG
195 GATCGGGTCCCCCCTGCATGCTATC-GATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAG
* *
420740 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGGCGAAACGAGCGGGCGGGCGGGCACTACGTC
259 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCC
* * * **
420805 GGCCAAAGAGGCTGGATGCGCAAGCTGTGGATCGATAGGGTGGTACATGGGTTTAGGCACATCTT
324 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * **
420870 CATATTTTTACTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTGAAGCC
389 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCC
420934 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
453 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * *
420999 GGTTCATGGTTTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACATGGTAGACGTGATCC
518 GGTTC-GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
421064 TTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGA
582 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
**
421129 CCATTTGAAAAAAGTGTCCTTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
647 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
421194 TCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGATTGATGAGGGATAAGGGGCCAATATAAGG
712 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
421259 GCCAAGTACCAGCACCTATCTCACATCATGTGCGC-CACCCCCTCG-CCCGCCCAATCGTTGCAA
777 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGACCC-CCCAATCGTCGGAA
* * ** * * * *
421322 CCCCAATGCCGTCAGTCAGGTTCTGTGACGATGCTCC-AGTGATGGTACCCTAGAC
841 CCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGA-CGATGGTGCCCAAG-C
* * * * * * *
421377 GAAAAAAAATACGACACCAGCACATGCGCAAGCCCAGCATGTGCACCCGTAACCCTCGGTTCAGC
1 GAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
* * *
421442 CTGATCTTACACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAATC
66 CTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
421507 AACCCACGAAACGAGAGTACGGGCCCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGAGGATC
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG-CGGGGATC
* * * * * * * * * * **
421572 GATCGGCTCCCCCCCTACGA-GCTACCAATCTTGTTGCCGCAATCCTC-GATTTGATCCAATCTT
195 GATCGGGT-CCCCCCTGC-ATGCTATCGATCCTGCTACCGCAACCCTCAG-TCTGGTCTGATCTT
** * * *
421635 AGACTGGGAATGAACTCAATATGCCTAAGGCAACCGACGAAACGAGCGGACGGGCGGGCACTACA
257 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * *
421700 TCGGCCAGAGAGGCGGGATGAGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATC
322 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
421765 TTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGC
387 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
421830 CTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTA
452 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
421895 TGGTTTGGGATTTTTCT-AAATTTTTTCAGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
517 CGGTTCGGGATTTTT-TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* ** * *
421959 CTTGTATTTTTGTTGGTGTGCACAAAAAAATTCAGCTAAAAATTCGAAGCGTACAGGATTTTGTG
581 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
*
422024 GCCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
646 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
422088 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-
711 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
422152 GGCCAAGTACTAGAACCCATCACACATCATGTGCGCACACCACCCCCG-CCCCCCAAATCG-CTG
776 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCTCGACCCCCC-AATCGTC-G
* * **
422215 GAACCCCAATGTCGTCGGTCAGGTTCTCC---G--G-T---A--ATGGTGCCCCGGGC
838 GAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG-CCCAAGC
* * * * * * *
422262 GAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAACATGTGCACCCGTAACCCTCGATCTGG
1 G-AAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGG
*
422327 TATGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
65 TCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
422392 CAACCCACGAAACGAGCCTACCGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGAT
130 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG-CGGGGAT
* * * ** * * * * * *
422457 TGGTTGGGTCCCCCCTGCATGCTGCCTATCCTACTACCACAACCCTCAATCCGGTCTGATCTAAG
194 CGATCGGGTCCCCCCTGCATGCTATCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAG
* * * * *
422522 ACTGGGAATGAACTCTGTATGCTTAAGCCAACCGACGAAACGAGCGAGTGGGCGAGCACTA-GCC
259 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG-C
* * * *
422586 CGACCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTGGGCACATCT
323 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
422651 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCC
388 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * ** * *
422716 TTCATGTTAAATTTCTTGGCAAGACGACTCGTTTTGAATTTTTCAAGATTTTTGAAACCTTTTAC
453 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * *
422781 GATTCGGGATTTTTTAAAAATTTTTTGAAAAGGAGTTTGGGCCCCAACCTTGGTAGACGTGATCC
518 GGTTCGGGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
422846 TTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGCGA
582 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * * *
422911 CCATTTGAAAAAGGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTATAAAATC
647 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
422976 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
712 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
423041 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCGAACCCCCCCCCGCCCCCCCAATCGCCGAA
777 GCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACACCCCCTCGACCCCCCAATCGTCGGA
* * * * * * *
423106 ACCCCAATGCCACTGGTCAGGTTCTTCGATGATGCT-CTAGCGTTGATGCCCCAGGC
840 ACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGA-CGATGGTG-CCCAAGC
* * ** ** *
423162 GAAAAAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTGCACCTACAGCCCTCGGTCCGG
1 G-AAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGG
423227 TCTGATCTTACACTGGGAATGAACTCCGTATGC-----C------T-AA----G--T--C-AA-T
65 TCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
423270 ----CCACGAAACGAGCATGTGGGCGCTTAGTCGACCTGAGGGGCAGGATGCATAAGCTGGGGAT
130 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGC-GGGGAT
* * * * * * * * * *
423331 CGA-CTTGGTCCCCCCTACGTGCTATCGATCCTGCTGCTGCAATCTTCAATTTGATCTGATCTTA
194 CGATC-GGGTCCCCCCTGCATGCTATCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTA
* * * * *
423395 GACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGTGTGCGGGCACTATGC
258 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGC
* * *
423460 CGGCCAAAGAGGCGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
323 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
423525 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
388 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
423590 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTAC
453 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
** * * *
423655 GGTTCAAGATTTTTTAAAAAATTTTTT-ACAAGGAGTTTTGGCCCCGAACTTGGTATACGTGATC
518 GGTTCGGGATTTTTT--AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
423719 CTTGTATTTTTTTTGGCATGTACAAAAAAAGTCAGCTAAACACTCGAAGTGTACAGGATTTTGTG
581 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
423784 ACCATTTGAAAAAAGTGTCCACATTTCAGAGACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
646 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
423849 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAG
711 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
423914 GGCCAAGTACCAGCACCCATTGCACATAATGTGCACACA-CCCCTCCG-CCCCCCAAGTCGTCGG
776 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT-CGACCCCCCAA-TCGTCGG
* * **
423977 AACCCCAATGTCGTCGGTCA-G------G-T--T-CTCCGACGATGGTGCCCTGGGC
839 AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCC-AAGC
* * * * *
424023 GAAAAACAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCA-CCGTAACCCTTGGTCTGAT
1 GAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
* ** *
424087 TTGATCTTACACTTAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTC
66 CTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
424152 AACCCACGAAACGAGCGTGCGGGCGTTCAACCGACTAGAGGGGCAGGATGCACAAGCCGTG-TCG
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCGGGGATCG
* * * * * ** * * **
424216 GTCGGGTCACCCCCTTCGTGCTGTCGATCTTGCTACTTCAACCCTCGGTCCGGTCCAATCTTAGA
196 ATCGGGTC-CCCCCTGCATGCTATCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGA
** * * * *
424281 CTGGGAATGAACTCCGTATGCCTAAGTGAACCAATGAAACGAGCAGGCGGGCGGGAACTACGCCG
260 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCG
* * *
424346 GCCAGAGAGGCGGGATGTGCATGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTC
325 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
424411 ATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
390 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
424476 CATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA-TTTTCATGATTTTCGAAACTTTTTATGG
455 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* *
424540 TTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTT
520 TTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
424605 GTATTTGTTTT-GCTTGCACAAAAAAATTCAGCTAAAAACCTCGAAGTGTACAGGATTTTGTGAC
584 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTCGAAGTGTACAGGATTTTGTGAC
*
424669 CAATTGAAAAAAGTGT
648 CATTTGAAAAAAGTGT
424685 ATAGGATTTT
Statistics
Matches: 8479, Mismatches: 1529, Indels: 990
0.77 0.14 0.09
Matches are distributed among these distances:
831 3 0.00
833 5 0.00
834 2 0.00
835 4 0.00
836 8 0.00
837 12 0.00
838 10 0.00
839 6 0.00
840 24 0.00
841 10 0.00
842 16 0.00
843 20 0.00
847 9 0.00
848 193 0.02
849 1 0.00
850 262 0.03
855 1 0.00
859 41 0.00
860 42 0.00
861 12 0.00
862 29 0.00
864 2 0.00
865 1 0.00
868 4 0.00
870 1 0.00
871 15 0.00
872 29 0.00
873 17 0.00
874 601 0.07
875 48 0.01
876 2 0.00
877 2 0.00
878 5 0.00
879 6 0.00
880 15 0.00
881 11 0.00
882 37 0.00
883 129 0.02
884 274 0.03
885 332 0.04
886 288 0.03
887 121 0.01
888 327 0.04
889 231 0.03
890 59 0.01
891 14 0.00
892 375 0.04
893 17 0.00
894 302 0.04
895 261 0.03
896 686 0.08
897 937 0.11
898 981 0.12
899 186 0.02
900 554 0.07
901 97 0.01
902 14 0.00
903 5 0.00
904 1 0.00
905 1 0.00
906 3 0.00
907 9 0.00
908 1 0.00
909 5 0.00
910 14 0.00
911 11 0.00
912 14 0.00
913 15 0.00
914 16 0.00
915 29 0.00
916 8 0.00
917 7 0.00
918 5 0.00
919 24 0.00
920 7 0.00
921 26 0.00
922 22 0.00
923 15 0.00
924 7 0.00
925 2 0.00
926 6 0.00
927 6 0.00
928 13 0.00
929 9 0.00
930 10 0.00
931 13 0.00
932 10 0.00
933 8 0.00
934 21 0.00
935 13 0.00
936 6 0.00
937 3 0.00
938 9 0.00
939 10 0.00
940 6 0.00
941 11 0.00
942 7 0.00
943 13 0.00
944 14 0.00
945 10 0.00
946 19 0.00
947 2 0.00
948 12 0.00
949 10 0.00
950 40 0.00
951 13 0.00
952 6 0.00
953 5 0.00
954 16 0.00
955 27 0.00
956 17 0.00
957 9 0.00
958 18 0.00
959 10 0.00
960 15 0.00
961 17 0.00
962 2 0.00
963 13 0.00
964 12 0.00
965 9 0.00
966 25 0.00
967 16 0.00
968 3 0.00
969 5 0.00
970 9 0.00
971 3 0.00
972 5 0.00
973 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (894 bp):
GAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
CTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCGGGGATCG
ATCGGGTCCCCCCTGCATGCTATCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGG
CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGACCCCCCAATCGTCGGAACCCCA
ATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCAAGC
Found at i:415183 original size:26 final size:26
Alignment explanation
Indices: 415154--415206 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
415144 CTGGTCCGGT
415154 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
415180 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
415206 C
1 C
415207 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:416981 original size:26 final size:27
Alignment explanation
Indices: 416944--417006 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
416934 CCGGTCCGAT
* *
416944 CTTACACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGGAATGAACTCCGTATG
416970 CTTAGA-TAGGGAATGAACTCCGTATG
1 CTTAGACTAGGGAATGAACTCCGTATG
416996 CTTAGACTAGG
1 CTTAGACTAGG
417007 AGGTACATCG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 1 0.03
26 28 0.85
27 4 0.12
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (27 bp):
CTTAGACTAGGGAATGAACTCCGTATG
Found at i:419692 original size:26 final size:26
Alignment explanation
Indices: 419654--419706 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
419644 CTAATTTGAT
419654 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* * *
419680 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
419706 C
1 C
419707 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:420589 original size:26 final size:26
Alignment explanation
Indices: 420551--420603 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
420541 CTGGTCTGAT
* *
420551 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACCCCGTATG
* *
420577 CTTAGACTAGGAATTAACCCCGTATG
1 CTTACACTAGGAATGAACCCCGTATG
420603 C
1 C
420604 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACCCCGTATG
Found at i:421483 original size:26 final size:26
Alignment explanation
Indices: 421447--421499 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
421437 TCAGCCTGAT
421447 CTTACACTGGGAATGAACTAC-GTATG
1 CTTACACTGGGAATGAACT-CTGTATG
*
421473 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
421499 C
1 C
421500 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:422367 original size:26 final size:26
Alignment explanation
Indices: 422333--422385 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
422323 CTGGTATGAT
422333 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
422359 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
422385 C
1 C
422386 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:423494 original size:874 final size:876
Alignment explanation
Indices: 418083--424684 Score: 7754
Period size: 897 Copynumber: 7.5 Consensus size: 876
418073 CTTTAGTCCA
*
418083 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGC
1 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * * *
418148 GGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCTGTGGATCGATAGGGTGGCAGGTAGGTT
66 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** * * *
418213 TAGGCACATCTTCATATTTCTGCCATGCCAATGCTGTTTTTTTGGCTTCTAAACTCATACAATGG
131 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
418278 TCCGTTAAGCCTTCATGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTC
196 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
418343 AAACTTTTTATGGTTCGGGATTTTTTAAAAATTTTTTC---AGGAGTTTTGACCCCAAACTTGGT
261 AAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
418405 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCCAAAAAATCGAAGTGTACA
326 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
418470 GGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAA
391 GGATTTTGTGACCATTTGAAAAAAGTGTCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
418535 CCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
418600 CCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCA--------C-ACCCCCTA
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCCGCCCCCCCA
*** * * * *
418656 ATCGCCAAAACCCCAACGTCGCCGGTCAGGTTC-T---C--TG-----GCGATGGTGCCGC-GAG
585 ATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCTAGCGATGGTGCCCCAG-G
* * *
418709 CG-AAAAAAATATGGCACCAGCACATGCCCGATCCTAGCATGTGCACCCGTAACCCTCG-G-T--
649 CGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CCGTAACCCTCGTGTTAC
* * * * * * * *
418769 -CT-GTTCTG-A-CCGTACACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCG
713 ACTGGATCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
* * ** * * * *
418830 TGCGGGCACTTAGCCGGCCAGAAAGGCAGGATGCGCAAGCTGGGGATCGGCTAGGTCCCCCCCTG
778 TGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATC-GCTGGGT-CCCCCCTA
* * *
418895 TGTGCTATCGATCCTGCT-ATCGCAACCCTCAGTCTG
841 CGTGCTATCGATCCTGCTGCT-GCAACCCTCAATCTG
* * * * *
418931 GTCTGATCTTAGTCTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGC
1 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
*
418996 GGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
419061 TAGGAACATCTTCATAGTTCTACCATGCCAATGCCATTTTTATGGCTTGTAGATTCATACAATGG
131 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
419126 TCCCTTAAGCCTTCATATGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* **
419191 AAACTTTTTATGGTTCGGGATTTTTT-TTAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
261 AAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
419255 AGATGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACA
326 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
419320 TGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
391 GGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
419385 CCTGTAAAATCTGAAATGCCCTTTAAGTGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
419450 CCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCCCCACCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCC-CCCGC-CCCC
** * * * ** **
419515 CCAATCATTGGAACCCCAATGCTGCCGGTCAAGTTC-TCTGGTGATGCTCCGGCGATGGTGCCCC
582 CCAATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTTC-GACGATGCTCTAGCGATGGTGCCCC
* * * *
419579 AAGCGAAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGAT
646 AGGCG-AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CCGTAACCCTCG--
*
419644 CTAATTTGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCT
707 ------TG---TTACACT-GG-AT---CT--GTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* ** * * * *
419709 AAGTCAACCCACAAAACGAGTGTACGGGCGCTCAGTCGGCCAAAAGGGCAGGATGCACAAGCCGG
756 AAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGG
* * * * * * *
419774 GGATCGGTCGGGTACCCCCTATGAGCTATTGAT-CTAGCTGCTGCAACCCTCGAT-TC
821 GGATCGCT-GGGTCCCCCCTACGTGCTATCGATCCT-GCTGCTGCAACCCTCAATCTG
* *
419830 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTACA-CCAACTGACGAAACGAGCGGGCGG
1 A-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA-AGCCAACCGACGAAACGAGCGGGCGG
*
419894 GCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
64 GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
419959 TTTAGGCACATCTTCATATTTCTACCATGCCAATGCCA-TTTTATGGCTTTTAAATTCATACAAT
129 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * * *
420023 GGTCCTTTAAGCCTTCATGTGAAGTTTCATGCCAAGACAACTCCTTTTCTATTTTTTACGATTTT
194 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * * *
420088 TGAAACTTTTTACGCTTTGGGATTTTTTAAAAAATTTTTCAGATGGAGTTTTGGCCCCAAACTTA
259 TGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * * *
420153 GTAGACATGATCCTTTTATTTTTTTTGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGTA
324 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
420218 CAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTCGCAGCA
389 CAGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
420283 AACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
420348 GGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCGGCCCTC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCCGCCC-C
* * * *
420413 GCCAATCGCTGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTC-CGACGATGGTGCCC
581 CCCAATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCTAG-CGATGGTGCCC
* * * * **
420477 C-GGGGGAAAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTTGGT
645 CAGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CCGTAACCC----T
* * *
420541 CTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATTAACCCCGTATGCCT
705 C--G--TG---TTACACT-GG-AT---CT--GTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
420606 AAGTCAACCCATGAAACGGGCATGCGGGCGCTCATCCTGCCAAAGGGGCAAGATGCACAAGCCGG
756 AAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGG
* * * ** *
420671 GGATCGGCCGGGTCCCCCCTACATGCTA-CAGATCCTGTTGCCACAACCCTCAATCCG
821 GGATC-GCTGGGTCCCCCCTACGTGCTATC-GATCCTGCTGCTGCAACCCTCAATCTG
* *
420728 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGGCGAAACGAGCGGGCGGGC
1 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * **
420793 GGGCACTACGTCGGCCAAAGAGGCTGGATGCGCAAGCTGTGGATCGATAGGGTGGTACATGGGTT
66 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * **
420858 TAGGCACATCTTCATATTTTTACTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
420923 T-CCTTGAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
196 TCCCTT-AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * *
420987 GAAACTTTTTACGGTTCATGG-TTTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACATG
260 GAAACTTTTTACGGTTC-GGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* *
421051 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTA
324 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
421116 CAGGATTTTGTGACCATTTGAAAAAAGTGTCCTTATTTCAGACACTTTAATGGCTACTGGCAGCA
389 CAGGATTTTGTGACCATTTGAAAAAAGTGTCC-CATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
421181 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGATTGATGAGGGATAAGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * *
421246 GGCCAATATAAGGGCCAAGTACCAGCACCTATCTCACATCATGTGCGC-CACCCCCTCGCCCGCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCCGCCCCCC
* * * * * * *
421310 CAATCGTTGCAACCCCAATGCCGTCAGTCAGGTTCTGT-GACGATGCTCCAGTGATGGTACCCTA
583 CAATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCT-TCGACGATGCTCTAGCGATGGTGCCCCA
* * * *
421374 GACGAAAAAAAATACGACACCAGCACATGCGCAAGCCCAGCATGTGCACCCGTAACCCTCGGTTC
647 GGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CCGTAA-CC-C---TC
*
421439 AGCCTGATCTTACACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
706 -G--TG---TTACACT-GG-AT---CT--GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
421504 ATCAACCCACGAAACGAG-AGTACGGGCCCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGAG
758 GTCAACCCACGAAACGAGCA-TGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGG
* * * * * * * * * * *
421568 GATCGATCGGCTCCCCCCCTACGAGCTACCAATCTTGTTGCCGCAATCCTCGATTTG
822 GATCGCT-GGGT-CCCCCCTACGTGCTATCGATCCTGCTGCTGCAACCCTCAATCTG
** ** * *
421625 ATCCAATCTTAGACTGGGAATGAACTCAATATGCCTAAGGCAACCGACGAAACGAGCGGACGGGC
1 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
** * *
421690 GGGCACTACATCGGCCAGAGAGGCGGGATGAGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
421755 TAGGTACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGG
131 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
421820 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
421885 AAACTTTTTATGGTTTGGGATTTTTCT--AAATTTTTTCAGATGGAGTTTTGGCCCCAAACTTGG
261 AAACTTTTTACGGTTCGGGATTTTT-TAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* ** * *
421948 TAGACGTGATCCTTGTATTTTTGTTGGTGTGCACAAAAAAATTCAGCTAAAAATTCGAAGCGTAC
325 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
422013 AGGATTTTGTGGCCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
390 AGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
422077 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
422142 GCCAATATAA-GGCCAAGTACTAGAACCCATCACACATCATGTGCGCACACCACCCCCGCCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCCGCCCCCC
* * *
422206 AAATCGCTGGAACCCCAATGTCGTCGGTCAGGTTC-TC--CG--G---TA---ATGGTGCCCCGG
583 CAATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCTAGCGATGGTGCCCCAG
** * *
422260 GCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAACATGTGCACCCGTAACCCTCGATCT
648 GCG-AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CCGTAA-CC-C--TC-
422325 GGTATGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
706 -G--TG---TTACACT-GG-AT---CT--GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
422390 GTCAACCCACGAAACGAGCCTACCGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGG
758 GTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGG
* * * * ** * * * ** *
422455 ATTGGTTGGGTCCCCCCTGCATGCTGCCTATCCTACTACCACAACCCTCAATCCG
823 A-TCGCTGGGTCCCCCCTACGTGCTATCGATCCTGCTGCTGCAACCCTCAATCTG
* * * * * *
422510 GTCTGATCTAAGACTGGGAATGAACTCTGTATGCTTAAGCCAACCGACGAAACGAGCGAGTGGGC
1 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * *
422575 GAGCACTA-GCCCGACCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGT
66 GGGCACTACG-CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
422639 TTGGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATG
130 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * ** *
422704 GTCCCTTAAGCCTTCATGTTAAATTTCTTGGCAAGACGACTCGTTTTGAATTTTTCAAGATTTTT
195 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * * *
422769 GAAACCTTTTACGATTCGGGATTTTTTAAAAATTTTTTGAAAAGGAGTTTGGGCCCCAACCTTGG
260 GAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
*
422834 TAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
325 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
422899 AGGATTTTGCGACCATTTGAAAAAGGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAACAA
390 AGGATTTTGTGACCATTTGAAAAAAGTGTC-CCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
422964 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
423029 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGAACCCCCCCCCGCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACCCCCCCCCGCCCCC
* * * * * *
423094 CCAATCGCCGAAACCCCAATGCC-ACTGGTCAGGTTCTTCGATGATGCTCTAGCGTTGATGCCCC
582 CCAATCGCTGGAACCCCAATGCCGTC-GGTCAGGTTCTTCGACGATGCTCTAGCGATGGTGCCCC
**
423158 AGGCGAAAAAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTGCACC-TACAGCCCTCG-
646 AGGCG-AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTA-A-CCCTCGT
* *
423221 G-T-C-C-GG-TCTG-AT-CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAATCCACGAAAC
708 GTTACACTGGATCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * * *
423279 GAGCATGTGGGCGCTTAGTCGACCTGAGGGGCAGGATGCATAAGCTGGGGATCGACTTGGTCCCC
773 GAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCG-CTGGGTCCCC
* * *
423344 CCTACGTGCTATCGATCCTGCTGCTGCAATCTTCAATTTG
837 CCTACGTGCTATCGATCCTGCTGCTGCAACCCTCAATCTG
* * * *
423384 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGTGTGC
1 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * *
423449 GGGCACTATGCCGGCCAAAGAGGCGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
423514 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
423579 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* ** * *
423644 AAACCTTTTACGGTTCAAGATTTTTTAAAAAATTTTTT-ACAAGGAGTTTTGGCCCCGAACTTGG
261 AAACTTTTTACGGTTCGGGATTTTTT-AAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
423708 TATACGTGATCCTTGTATTTTTTTTGGCATGTACAAAAAAAGTCAGCTAAACACTCGAAGTGTAC
325 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
423773 AGGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGAGACTTTAATGGCTACTGGCAGCAA
390 AGGATTTTGTGACCATTTGAAAAAAGTGTCC-CATTTCAGACACTTTAATGGCTACTGGCAGCAA
423838 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * * *
423903 GCCAATATGAGGGCCAAGTACCAGCACCCATTGCACATAATGTGCACACACCCCTCCG-CCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCCGCCCCCCC
* **
423967 AAGTCG-TCGGAACCCCAATGTCGTCGGTCAGGTTC-TC--C---G----A-CGATGGTGCCCTG
584 AA-TCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCTAGCGATGGTGCCCCA
* * *
424020 GGCGAAAAACAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCGTAACCCTTGGTCTG
647 GGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTAACCC----TC-G
* *
424085 ATTTGATCTTACACTTAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAG
707 ---TG---TTACAC-T-G---G-A-TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
424150 TCAACCCACGAAACGAGCGTGCGGGCGTTCAACCGACTAGAGGGGCAGGATGCACAAGCC-GTG-
759 TCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGA
* * * * * * ** *
424213 TCGGTCGGGTCACCCCCTTCGTGCTGTCGATCTTGCTACTTCAACCCTCGGTCCG
824 TCGCT-GGGTC-CCCCCTACGTGCTATCGATCCTGCTGCTGCAACCCTCAATCTG
* ** ** * * *
424268 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCAATGAAACGAGCAGGCGGGC
1 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * *
424333 GGGAACTACGCCGGCCAGAGAGGCGGGATGTGCATGCCGTGGATCGATAGGGTGGTAAGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
424398 TAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
424463 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA-TTTTCATGATTTTCG
196 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
424527 AAACTTTTTATGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGT
261 AAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* *
424592 AGACGTGATCCTTGTATTTGTTTT-GCTTGCACAAAAAAATTCAGCTAAAAACCTCGAAGTGTAC
326 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTCGAAGTGTAC
*
424656 AGGATTTTGTGACCAATTGAAAAAAGTGT
390 AGGATTTTGTGACCATTTGAAAAAAGTGT
424685 ATAGGATTTT
Statistics
Matches: 4989, Mismatches: 606, Indels: 283
0.85 0.10 0.05
Matches are distributed among these distances:
847 9 0.00
848 257 0.05
850 249 0.05
851 3 0.00
859 3 0.00
860 43 0.01
861 15 0.00
862 32 0.01
863 2 0.00
864 1 0.00
866 1 0.00
868 3 0.00
871 10 0.00
872 35 0.01
873 20 0.00
874 627 0.13
875 64 0.01
876 1 0.00
877 1 0.00
878 2 0.00
880 1 0.00
881 1 0.00
882 34 0.01
883 135 0.03
884 262 0.05
885 373 0.07
886 280 0.06
887 119 0.02
888 36 0.01
889 42 0.01
890 4 0.00
891 4 0.00
892 1 0.00
893 3 0.00
894 36 0.01
895 168 0.03
896 330 0.07
897 642 0.13
898 375 0.08
899 172 0.03
900 500 0.10
901 92 0.02
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (876 bp):
ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
AAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
GGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCCGCCCCCCCAA
TCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCTAGCGATGGTGCCCCAGGCG
AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTAACCCTCGTGTTACACT
GGATCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGC
GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGCTGGGTCCCCCCTACGTGC
TATCGATCCTGCTGCTGCAACCCTCAATCTG
Found at i:424915 original size:26 final size:26
Alignment explanation
Indices: 424886--424938 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
424876 CTGGTCTGAT
*
424886 CTTACATTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
424912 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
424938 C
1 C
424939 CTAAGCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:432597 original size:26 final size:26
Alignment explanation
Indices: 432561--432613 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
432551 CTGGTCTGAT
432561 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
432587 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
432613 C
1 C
432614 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:433487 original size:26 final size:26
Alignment explanation
Indices: 433458--433510 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
433448 CCGGTCCAAT
*
433458 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAAATCCGTATG
*
433484 CTTAGACTGGGAATGAAATCCGTATG
1 CTTACACTGGGAATGAAATCCGTATG
433510 C
1 C
433511 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAAATCCGTATG
Found at i:433908 original size:899 final size:883
Alignment explanation
Indices: 431815--434205 Score: 3569
Period size: 884 Copynumber: 2.7 Consensus size: 883
431805 CTGTGACACT
* * *
431815 TGCGTGCTGCCAATCCTGCTGTCGTAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTT
1 TGCGTGCTGCCGATCCTGCTGTCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTT
**
431880 CGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGTGGGCACTATGCCGGCCAGAGAGGCGGG
66 CGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGTGGGCACTACACCGGCCAGAGAGGCGGG
* *
431945 --ACGCACAGGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCCA
131 ATACGGA-A-GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
432008 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
194 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
*
432073 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
259 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTT
*
432138 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
324 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
432203 GCATGCACAAAACAATTTAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
389 GCATGCACAAAACAATTCAGCTAAAAACTC-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* * * * *
432268 TGTCCCCATTCCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCA
453 TATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTA
* * * * *
432333 AGAGAGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCA
518 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* *
432398 CCCATTGCACATCATGTGCGCACACCCCCCGACCCCCCAATCACCGGAACCCTAATGCCGTCGGT
583 CCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCAATCACCGGAACCCCAATGCCGTCGGT
* * * * * *
432463 CAGGTTCTCCGACGATGGTGCCCCGACCAAAAAAATATGCAGCACCAGCACATGCTCGAGCCTAG
648 CAGGTTCTCCGACGATGGTGCCCCGACCAAAAAAAAAAGCAGCACCAGCACATCCCCGAACCTAA
* * **
432528 CATGTGCACCTGTAACCCTTGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGA
713 CATGTGCACCTGCAACCCTTGGTCCGGTCCAATCTTACACTGGGAATGAACTCCATATGCTTAGA
*
432593 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATACGGGCGCTCAGTCGGCCA
778 CTGGGAATGAAATCCGTATGCCTAAGTCAACCCACGAAACAAGCATACGGGCGCTCAGTCGGCCA
*
432658 GAGGGGCAGGATGCACAAGCCGAGGATCGGTTGGGCCCCCC
843 GAGGGGCAGGATGCACAAGCCGAGGATCGGTCGGGCCCCCC
* * * * * * * *
432699 TGCATGCTACTGATCTTGTTGTTGTAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAAC-T
1 TGCGTGCTGCCGATCCTGCTGTCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTT
* * * * * *
432763 CTGTATGCCTAAGCCAACCAACGAAACAAGCGAGTGAGTGGTCACTACACCGGCCAGAGAGGCGA
66 C-GTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGTGGGCACTACACCGGCCAGAGAGGCGG
* * *
432828 GATGCGGAAGCTGTGGATCGATAGGGTGGTCA-GTGGGTTTACGCACATCTTCATATTTCTGCCA
130 GATACGGAAGCCGTGGATCGATAGGGTGGT-AGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
432892 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
194 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * ** *
432957 CATGGCAAGACGACTCATTTTCTATTTTCCATAATTTTTGAAACTTTTTACGGTTCCAGATTTTT
259 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTT
* *
433022 TTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTG
324 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
433087 GCATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
389 GCATGCACAAAACAATTCAGCTAAAAACTC-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* * *
433152 TATCCCCATTTCAGACACTTTAATGGCCACTGGCAACAAACCTGTAAAATCTCAAGTGCTATTTA
453 TATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTA
*
433217 AGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGGCCAATATAAGGGCCAAGTACCAGC
518 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGC
* *
433282 ACCCATCGCACATCATGTGCGTACACCCCCTG-CCCCCCTAATCACCGGAACCCCAATGCCGTCG
582 ACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCC-AATCACCGGAACCCCAATGCCGTCG
* * *
433346 GTCAGGTTCTTCGACGATGCTTCGGCGATGGTGCCTCGAACGAAAAAAAAAAGCAGCACTAGCAC
646 GTCAGGTTC-TC--CGA--------CGATGGTGCCCCG-ACCAAAAAAAAAAGCAGCACCAGCAC
433411 ATCCCCGATACC-AACATGTGCACCTGCAACCCTTGGTCCGGTCCAATCTTACACTGGGAATGAA
699 ATCCCCGA-ACCTAACATGTGCACCTGCAACCCTTGGTCCGGTCCAATCTTACACTGGGAATGAA
* ** * *
433475 CTCCGTATGCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACGAAATGAGCTTGCGG
763 CTCCATATGCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACGAAACAAGCATACGG
* * * * *
433540 GCGCTCAGTCTGCCAGAGGGGTAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCTCC
828 GCGCTCAGTCGGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGGTCGGG-CCCC-CC
** *
433598 TGCGTGCTGCCGATCCTGCTGTCACAACCCTCAGTCTGGTCCAATCTTAGATTGGGAATGAACTT
1 TGCGTGCTGCCGATCCTGCTGTCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTT
* * * *
433663 CGTATGACTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAAAGAGACGGG
66 CGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGTGGGCACTACACCGGCCAGAGAGGCGGG
* * *
433728 ATACGGAAGCCATGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATG
131 ATACGGAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* *
433793 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCATGTGAAGTTACA
196 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
** * *
433858 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTATTTACGGTTTGAGATTTTTTT
261 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTT
* *
433923 AAAATTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGC
326 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
433988 ATGCACAAAACAATTCAGCTAAAAACGTCAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTG
391 ATGCACAAAACAATTCAGCTAAAAAC-TCAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT-
*
434052 A--CCCATTTCAGACACGTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AGATGCTCTTTA
454 ATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAG-TGCTCTTTA
* *
434114 AGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGTACCAGCA
518 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
*
434179 CCCATCGCACATCACGTGCGCACACCC
583 CCCATCGCACATCATGTGCGCACACCC
434206 ATCACACATC
Statistics
Matches: 1348, Mismatches: 133, Indels: 40
0.89 0.09 0.03
Matches are distributed among these distances:
883 2 0.00
884 498 0.37
885 92 0.07
886 5 0.00
888 3 0.00
896 69 0.05
897 264 0.20
898 14 0.01
899 397 0.29
900 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (883 bp):
TGCGTGCTGCCGATCCTGCTGTCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTT
CGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGTGGGCACTACACCGGCCAGAGAGGCGGG
ATACGGAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTT
AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAACAATTCAGCTAAAAACTCAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTAT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGG
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCGACCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAG
GTTCTCCGACGATGGTGCCCCGACCAAAAAAAAAAGCAGCACCAGCACATCCCCGAACCTAACAT
GTGCACCTGCAACCCTTGGTCCGGTCCAATCTTACACTGGGAATGAACTCCATATGCTTAGACTG
GGAATGAAATCCGTATGCCTAAGTCAACCCACGAAACAAGCATACGGGCGCTCAGTCGGCCAGAG
GGGCAGGATGCACAAGCCGAGGATCGGTCGGGCCCCCC
Found at i:434206 original size:24 final size:24
Alignment explanation
Indices: 434177--434229 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
434167 CAAGTACCAG
*
434177 CACCCATCGCACATCACGTGCGCA
1 CACCCATCACACATCACGTGCGCA
*
434201 CACCCATCACACATCATGTGCGCA
1 CACCCATCACACATCACGTGCGCA
434225 CACCC
1 CACCC
434230 CCCCGCCCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.47, G:0.13, T:0.13
Consensus pattern (24 bp):
CACCCATCACACATCACGTGCGCA
Found at i:434415 original size:26 final size:26
Alignment explanation
Indices: 434379--434431 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
434369 CTGGTTTGAT
*
434379 CTTACACTGGGAATGGACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
*
434405 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
434431 C
1 C
434432 CTAAGCGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:435146 original size:26 final size:26
Alignment explanation
Indices: 435117--435169 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
435107 CTGGTCTGAT
435117 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
435143 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
435169 C
1 C
435170 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:436550 original size:763 final size:764
Alignment explanation
Indices: 435311--436726 Score: 2141
Period size: 765 Copynumber: 1.8 Consensus size: 764
435301 TGTAGACTGG
* *
435311 GAATCAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCAGGCGGGCACTACGTCGACCA
1 GAATCAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCAGGCGGGAACTACGCCGACCA
*
435376 GAGAGGCGGGACGCACAAGCCGTGGATCGACAGCATGGTAGGTGAGTTTAGGCACATCTTCATAT
66 GAGAGGCGGGACGCACAAGCCATGGATCGACAGCATGGTAGGTGAGTTTAGGCACATCTTCATAT
* *
435441 TTCTGCCATGCCAATGCCATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
131 TACTACCATGCCAATGCCATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* *
435506 GACGTTTCATGGCAAGACGACTCATTTTCTATTTTTCGTGATTTTTGAAACTTTTTATGCTTCAA
196 GAC-TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGCTTCAA
* * *
435571 GATTTTTTTAAAACTTTTTCAGAAGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTTTT
260 GATTTTTTTAAAACTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TTA
* *
435636 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAATCTCGAAGTGAACAGGATTTTGTGTCCATTT
324 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAATCTCGAAGTGAACAGGATTTTGTGACCATTA
*
435701 GAAAAAAATGTCCCCATTTGAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAAT
389 GAAAAAAATGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAAT
435766 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGCCAATATAAGGGCCAAGT
454 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGT
* * * * *
435830 AACAGCA-GCCATC-ACACATCATGTGCGCACACCCCCCGC-CCCCCCAATTGTCAGAACCCCAA
519 AACAG-ATCCCATCGA-ACATCATCTGCACACACCCCCCACTCCCCCCAATCGTCAGAACCCCAA
* * *
435892 TGCCGCCGGTCAGGTTTTTCGACGATGCTCCGGTGATGGT-CCCCGGGCTTTCAAAAAAATACAG
582 TGCCGCCGGTCAAGTTCTCCGACGATGCTCC-GTGATGGTGCCCCGGG---TCAAAAAAATACAG
435956 CACCAGCAAATGCCCAGCCGGCCATAGGGGCAGGATGCGTAAGCCGGGGATCAGTCGGGTCCCCA
643 CACCAGCAAATGCCCAGCCGGCCATAGGGGCAGGATGCGTAAGCCGGGGATCAGTCGGGTCCCCA
436021 CCTACGTGTTGTCGATCTTGCTACCACAACCCTCAGTCCAGTCCGATCTTACACTTA
708 CCTACGTGTTGTCGATCTTGCTACCACAACCCTCAGTCCAGTCCGATCTTACACTTA
* * * * * * * *
436078 GAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGTGGGCGGGCGGGAACTATGCCGGCCA
1 GAATCAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCAGGCGGGAACTACGCCGACCA
* * * * * * ** *
436143 GAGTGGTGGGATGCGCAAGTCATGGATCGA-TGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
66 GAGAGGCGGGACGCACAAGCCATGGATCGACAGCATGGTAGGTGAGTTTAGGCACATCTTCATAT
* *
436207 TACTACCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGATG
131 TACTACCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* * *
436272 TGA-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
195 TGACTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGCTTCAA
436336 GATTTTTTTAAAA-TTTTTCCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TA
260 GATTTTTTTAAAACTTTTT-CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTA
* *
436399 TTTTGTTGGCATGCACAAAAAAATTTAGCTACAAA-CTCGAAGTGTACAGGATTTTGTGACCATT
324 TTTTGTTGGCATGCACAAAAAAATTCAGCTA-AAATCTCGAAGTGAACAGGATTTTGTGACCATT
* *
436463 AGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
388 AGAAAAAAATGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAA
436528 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
453 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAA
* * *
436593 GTACCAGATCCCATCGAACATCATCTGCACACACCCCCCACTATCCCTCCAATCGTCGGAACCCC
517 GTAACAGATCCCATCGAACATCATCTGCACACACCCCCCAC--TCCCCCCAATCGTCAGAACCCC
* * * * *
436658 AATGCCTCCGGTCAAGTTCTCCGTCGATGGTCCGTGATGGTGCCCCGGGTGAAAAAAATGCAGCA
580 AATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGTGATGGTGCCCCGGGTCAAAAAAATACAGCA
436723 CCAG
645 CCAG
436727 TACATGCTCG
Statistics
Matches: 583, Mismatches: 55, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
763 163 0.28
764 9 0.02
765 178 0.31
766 47 0.08
767 134 0.23
768 52 0.09
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (764 bp):
GAATCAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCAGGCGGGAACTACGCCGACCA
GAGAGGCGGGACGCACAAGCCATGGATCGACAGCATGGTAGGTGAGTTTAGGCACATCTTCATAT
TACTACCATGCCAATGCCATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
GACTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGCTTCAAG
ATTTTTTTAAAACTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTATT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAATCTCGAAGTGAACAGGATTTTGTGACCATTAGA
AAAAAATGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTAA
CAGATCCCATCGAACATCATCTGCACACACCCCCCACTCCCCCCAATCGTCAGAACCCCAATGCC
GCCGGTCAAGTTCTCCGACGATGCTCCGTGATGGTGCCCCGGGTCAAAAAAATACAGCACCAGCA
AATGCCCAGCCGGCCATAGGGGCAGGATGCGTAAGCCGGGGATCAGTCGGGTCCCCACCTACGTG
TTGTCGATCTTGCTACCACAACCCTCAGTCCAGTCCGATCTTACACTTA
Found at i:436748 original size:17 final size:17
Alignment explanation
Indices: 436723--436762 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
436713 AAATGCAGCA
*
436723 CCAGTACATG-CTCGAGC
1 CCAGCACATGCCT-GAGC
436740 CCAGCACATGCCTGAGC
1 CCAGCACATGCCTGAGC
436757 CCAGCA
1 CCAGCA
436763 TGTGCACCCG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.25, C:0.40, G:0.23, T:0.12
Consensus pattern (17 bp):
CCAGCACATGCCTGAGC
Found at i:436828 original size:26 final size:27
Alignment explanation
Indices: 436799--436851 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
436789 CTGATGTTAC
436799 ACTGGGAATGAACTCCGTATG-CTAAG
1 ACTGGGAATGAACTCCGTATGCCTAAG
436825 ACTGGGAATGAACTCCGTATGCCTAAG
1 ACTGGGAATGAACTCCGTATGCCTAAG
436852 TCAACCCACG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (27 bp):
ACTGGGAATGAACTCCGTATGCCTAAG
Found at i:437701 original size:26 final size:26
Alignment explanation
Indices: 437672--437724 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
437662 CCATTCCGAT
437672 CTTACACTGGGAATGAA-TTCAGTATG
1 CTTACACTGGGAATGAACTTC-GTATG
* *
437698 CTTAGATTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
437724 C
1 C
437725 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:438560 original size:26 final size:26
Alignment explanation
Indices: 438522--438574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
438512 CCCGTTCAAT
*
438522 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* *
438548 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
438574 C
1 C
438575 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:440592 original size:26 final size:26
Alignment explanation
Indices: 440537--440592 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
440527 GGTCTAGTCT
* *
440537 AATG-TTACACTAGGAATGAACTCTG
1 AATGCTTACACTAAGAATGAACTCCG
* *
440562 TATGCTTAGACTAAGAATGAACTCCG
1 AATGCTTACACTAAGAATGAACTCCG
440588 AATGC
1 AATGC
440593 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (26 bp):
AATGCTTACACTAAGAATGAACTCCG
Found at i:442251 original size:26 final size:26
Alignment explanation
Indices: 442222--442274 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
442212 CCGATTTGAT
*
442222 CTTACACTGGGAATGCACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
442248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
442274 C
1 C
442275 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:442578 original size:159 final size:158
Alignment explanation
Indices: 442248--442614 Score: 450
Period size: 159 Copynumber: 2.3 Consensus size: 158
442238 ACTCCGTATG
* * *
442248 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTAAGC
*** *
442313 CGACAGAGGGGCAAGATGCGCAAGCCAGGGAACGGCTGGGTCCCCCCTTGCATGCTGCCAATCTT
66 CGACAGAGGGGCAAGATGCGCAAGCCAGGGAACGGCCAAGTCCCCCCTTGCATGCTGCCAATCCT
* * *
442378 GCTATCGTAACCCTCATTCCAGTCCAAT
131 GCTACCGCAACCCTCAGTCCAGTCCAAT
* *
442406 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTAAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTAAGC
* * * * * ** * *
442471 TGACCAGAGGGGCAGGATGCGTAAGTC-GAGGATCGGCCAAGT-CCCCCTATGTGTGCTGTCGAT
66 CGA-CAGAGGGGCAAGATGCGCAAGCCAG-GGAACGGCCAAGTCCCCCCT-TGCATGCTGCCAAT
* **
442534 CCTGCTACCGCAACCCTCGGTCTGGTCCAAT
128 CCTGCTACCGCAACCCTCAGTCCAGTCCAAT
* * *
442565 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
442615 GGGCAGGCGG
Statistics
Matches: 178, Mismatches: 28, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
158 69 0.39
159 109 0.61
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTAAGC
CGACAGAGGGGCAAGATGCGCAAGCCAGGGAACGGCCAAGTCCCCCCTTGCATGCTGCCAATCCT
GCTACCGCAACCCTCAGTCCAGTCCAAT
Found at i:443317 original size:26 final size:26
Alignment explanation
Indices: 443279--443331 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
443269 CCAGTCTGAT
*
443279 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
* *
443305 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
443331 C
1 C
443332 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:447471 original size:21 final size:21
Alignment explanation
Indices: 447422--447471 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
447412 CATGGGTGGC
*
447422 TCATGGCAACCAAAGTCCTGG
1 TCATGGCCACCAAAGTCCTGG
447443 TCATGGCCACCAAAGTCCTGG
1 TCATGGCCACCAAAGTCCTGG
447464 TCATGGCC
1 TCATGGCC
447472 CTATACAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (21 bp):
TCATGGCCACCAAAGTCCTGG
Found at i:448329 original size:26 final size:26
Alignment explanation
Indices: 448279--448331 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
448269 CCAGTCCGAT
**
448279 CTTACACTGGGAATGAACTTTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
448305 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
448331 C
1 C
448332 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:450067 original size:26 final size:26
Alignment explanation
Indices: 450038--450090 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
450028 CCAGTTTGAT
*
450038 CTTACACTGGGAATGAAGTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
450064 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
450090 C
1 C
450091 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:451032 original size:261 final size:258
Alignment explanation
Indices: 450565--451052 Score: 682
Period size: 261 Copynumber: 1.9 Consensus size: 258
450555 TTTGATAAGC
* *
450565 GATACGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCGTGTGCACACACCCCCTC
1 GATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGTGTGCACACACCCCCCC
* * * *
450630 GCCCCCTAATCGTCTGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGACAATGGTG
66 GCCCCCCAATCGACTGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACAATGGTG
* * * * *
450695 CCTCGGGTGAAAAAAAAAGTGGCACCAGCACATGCCCGAGGCCAGCATGTGCATCCGTAACCCTC
131 CCCCGGGTCAAAAAAAAAGTGGCACCACCACATGCCCGAGCCCAGCATGTGCATCCGCAACCCTC
*
450760 GGTCTGATCCGATCTTACACTGGGAATGAACTTCGTACCAGCACCCATCGCACATCATGTGCG
196 GGTCTGATCCGATCTTACACTGGAAATGAACTTCGTACCAGCACCCATCGCACATCATGTGCG
* * * *
450823 GATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACTTCAAGTGTGTACAC-CCTCC
1 GATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC--GTGTGCACACACC-CC
**
450887 CCCGCCCCCCCAATC-ACTGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCC-AGTG
63 CCCG-CCCCCCAATCGACT-GAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGA-CA
*
450950 ATGGTGCCCCGGG-CAAAAAAAAATGTGGCACCACCACATGTCCGAGCCCAGCATGTGCA-CCTG
125 ATGGTGCCCCGGGTCAAAAAAAAA-GTGGCACCACCACATGCCCGAGCCCAGCATGTGCATCC-G
451013 CAACCCTCGGT-TCGATCCGATCTTACACTGGAAATGAACT
188 CAACCCTCGGTCT-GATCCGATCTTACACTGGAAATGAACT
451053 CTGTATGCTT
Statistics
Matches: 202, Mismatches: 19, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
258 43 0.21
259 2 0.01
260 29 0.14
261 128 0.63
ACGTcount: A:0.25, C:0.33, G:0.23, T:0.19
Consensus pattern (258 bp):
GATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGTGTGCACACACCCCCCC
GCCCCCCAATCGACTGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACAATGGTG
CCCCGGGTCAAAAAAAAAGTGGCACCACCACATGCCCGAGCCCAGCATGTGCATCCGCAACCCTC
GGTCTGATCCGATCTTACACTGGAAATGAACTTCGTACCAGCACCCATCGCACATCATGTGCG
Found at i:451074 original size:26 final size:26
Alignment explanation
Indices: 451034--451086 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
451024 TCGATCCGAT
*
451034 CTTACACTGGAAATGAACTCTGTATG
1 CTTACACTGGAAATGAACTCCGTATG
* *
451060 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
451086 C
1 C
451087 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGAAATGAACTCCGTATG
Found at i:452832 original size:26 final size:26
Alignment explanation
Indices: 452794--452846 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
452784 CCGATCCGAT
*
452794 CTTACACTAGGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
452820 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
452846 C
1 C
452847 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:452928 original size:871 final size:869
Alignment explanation
Indices: 450822--453806 Score: 3708
Period size: 871 Copynumber: 3.4 Consensus size: 869
450812 CATCATGTGC
* * * ** *
450822 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACTTCAAGTGTGTACACCCTCC
1 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC--TTGTGCGCACAC-CC
* * * *
450887 CCCGCCCCCCCAATC-ACTGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCAGTGA
63 CCCG-CCCCCCAATCGTC-GGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGGTGA
* * * *
450951 TGGTGCCCCGGGCAAAAAAAAATGTGGCACCACCACATGTCC-GAGCCCAGCATGTGCACCTGCA
126 TGGTGCCCCGGGCAAAAAAAAATATGGCACCAGCACATG-CCTAAGCCCAGCATGTGCACCCGCA
* * *
451015 ACCCTCGGTTCGATCCGATCTTACACTGGAAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
190 ACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * ** * * *
451080 CGTATGCCTAAGTCAACCCACGAAACGAGTGCGCAGATGCTCAACCGACTAGAGGGGCAAGATGC
255 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCAGGATGC
* * * * * * * * *
451145 GCAAGTCGGGGATATGTCGGGTCCTCCCTATGTGTTGTCGATCCTGCTGTCGTAACCCTCAATCC
320 ACAAG-CCGGGATATGTCGGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAATCT
* * *
451210 GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCTAACCGATGAAACGAGCGGGTGGG
384 GGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGATGAAACGAGCGGGCGGG
* * *
451275 CGGGCACTACGCCTGCCAGAGAGGCGAGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
449 C-GGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * *
451340 TTACGCACATCTTCATATTTCTGCCATGCAAATGCCATTTTTATGGCCTAGTTAATTCATACAAT
513 TTAAGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGG-CTTGTAAATTCATACAA-
451405 TGGT-CCTTAAGCCTTCATGTGAAGTTTCATGGCAGACGACTTGTTTTCTATTTTTCACGGATTT
576 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAGACGACTTGTTTTCTATTTTTCAC-GA-TT
*
451469 TTTAAAACTTTTTACGATTC-GAGATTTTTTTAAAATTCTTTTAGAAGGATTTTTGGCCCCAAAT
639 TTTAAAACTTTTTACGGTTCAG-GATTTTTTTAAAATTCTTTTAGAAGGATTTTTGGCCCCAAAT
*
451533 TTGGTAGATGTGATCCTTGTATATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
703 TTGGTAGACGTGATCCTTGTAT-TTTTGTT-G-A-GCAC--------TC-G-----------AAG
* * * * *
451598 TGTACAGGAATTTGTGACGATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTAGC
744 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAAACTTTAATGGCTACTGGC
* *
451663 AGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAG
809 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* *
451724 GGATAGGGGGCTAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCTTGTGCG---------C
1 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCC
* ** * *
451780 GCCACCCAATCACCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTTCGGTGATGGTG
66 GCCCCCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGGTGATGGTG
451845 CCCCGGGCAAAAAAAAATATGGCACCAGCACATGCCTAAGCCCAGCATGTGCACCCGCAACCCTC
131 CCCCGGGCAAAAAAAAATATGGCACCAGCACATGCCTAAGCCCAGCATGTGCACCCGCAACCCTC
* * * *
451910 AGTCCGATCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAACGAACTCTGTATG
196 GGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
451975 CCTAAGTCAACCCATGAAACGAGCGTGCAAGTGCTCAGTCGGCCAGAGGGCCAGTATGCACAAGC
261 CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGC
* * * * * ** *
452040 TGGTGATCA-GCCGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGGTCTGATCA
326 CGG-GAT-ATGTCGGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAATCTGGTCA
* * *
452104 GATCTTAGACTAGGAATGACCTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCAGGC
389 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGATGAAACGAGCGGGCGGGC-GGC
* ** * * *
452169 ACTACGTCGGCCAGAGAGATGGGATGCGTAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAAG
453 ACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAG
* * * *
452234 CACATCTTCATATTTCTACCGTGCCAATGCCATTTTTATGGCTTGCAAATTCATACAACGTTCCC
518 CACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
452299 TTAAGCCTTCATGTGAAGTTTCATGGCACGACGACTTGTTTTCTATTTTTCATGATTTTTAAAAC
583 TTAAGCCTTCATGTGAAGTTTCATGGCA-GACGACTTGTTTTCTATTTTTCACGATTTTTAAAAC
* * * * *
452364 CTTTTACGGTTCAGGATTTTTCTAAAATT-TTTTCAGATGGAGTTTT-GCCCCAAACTTGGTAGA
647 TTTTTACGGTTCAGGATTTTTTTAAAATTCTTTT-AGAAGGATTTTTGGCCCCAAATTTGGTAGA
* * * *
452427 CATGATCGTTGTATTTTTGTTG-GCACTCGAAGTGTATAGGATTTTGTGTCCATTTGAAAAAAGT
711 CGTGATCCTTGTATTTTTGTTGAGCACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
* * * *
452491 GTCCCCATTTCAGAAACTTTAGTGGCTACTGGCAGCAAACCTAT-AAATCTCAGATGCTCTTTAA
776 GTCCCCATTTTAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
452555 GGGGGTGTGAGTTCTCAAGGTTTGATGAG
841 GGGGGTGTGAGTTCTCAAGGTTTGATGAG
*
452584 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCTTGTGCGCACACCCCCC
1 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCC
* * * *
452649 GTCCCCCTGAATCGTCGGAACCCCAATGCCACCGATCTGGTTCTCCGGTGATGCTCCGGTGATGG
66 G-CCCCC-CAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGGTGATGG
* * *
452714 TGCCCTGGGCAAAAAAAAATACGGCACCAGCACATGCCTAAGCCCAGCATGTGCACCCACAACCC
129 TGCCCCGGGCAAAAAAAAATATGGCACCAGCACATGCCTAAGCCCAGCATGTGCACCCGCAACCC
* * *
452779 TTGGTCCGATCCGATCTTACACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTA
194 TCGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* *
452844 TGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACTAGAGGGGCAGGATGCATAA
259 TGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAA
* * * **
452909 GCCGAGGATATGTCGGGTCCCCCCTACATGCTGTCGATCCTATTACCGCAACCCTTTATCTGGTC
324 GCCG-GGATATGTCGGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAATCTGGTC
* * *
452974 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGATGAAATGAGCTGGCGGGCGAG
388 AGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGATGAAACGAGCGGGCGGGCG-G
* *
453039 CACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTGAG
452 CACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAA
* * *
453104 GCACATCTTTATATTTTTGCCGTGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCC
517 GCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
453169 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGATA
582 CTTAAGCCTTCATGTGAAGTTTCATGGC-AGACGACTTGTTTTCTATTTTTCACGATTTTTAAAA
* *
453234 CTTTTTACGGTTCAAGATTTTTTTTAAATTCTTTTAGAAGGATTTTTGGCCCCAAATTTGGTAGA
646 CTTTTTACGGTTCAGGATTTTTTTAAAATTCTTTTAGAAGGATTTTTGGCCCCAAATTTGGTAGA
453299 CGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
711 CGTGATCCTTGTA--TTT-TT-G-TTG-------------AGC-----ACTCGAAGTGTACAGGA
*
453364 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTTAGATACTTTAATGGCTACTGGCAGCAAACC
753 TTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTTAGAAACTTTAATGGCTACTGGCAGCAAACC
**
453429 TGTAAAATCTCAAATGCTCTTTAA-GGGGAATGAGTTCTCAAGGTTTGATGAG
817 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* *
453481 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCT
1 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCC-
* * * * *
453546 CTTCCCCCCAATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCCGCGATGG
65 C-GCCCCCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGGTGATGG
* * * * * *
453611 TGCCTCGGGCGAAAAAAAATGTGGCACTAGCACATGCCTGATCCCAGCATGTGCACCCGCAACCC
129 TGCCCCGGGCAAAAAAAAATATGGCACCAGCACATGCCTAAGCCCAGCATGTGCACCCGCAACCC
* * **
453676 TCGGTCTGGTTTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
194 TCGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * *
453741 TGCC-AAGTCAACCCACGAAACGAGCGTAC-GGACGCTCAGCCGGCCAGAGGGGCATGATGCGCA
259 TGCCTAAGTCAACCCACGAAACGAGCGTGCAGG-CGCTCAGCCGACCAGAGGGGCAGGATGCACA
453804 AGC
323 AGC
453807 TAGGGATCGG
Statistics
Matches: 1810, Mismatches: 219, Indels: 114
0.84 0.10 0.05
Matches are distributed among these distances:
860 98 0.05
861 69 0.04
869 2 0.00
870 6 0.00
871 541 0.30
872 34 0.02
873 2 0.00
874 3 0.00
875 2 0.00
876 1 0.00
877 3 0.00
881 4 0.00
884 1 0.00
885 7 0.00
886 31 0.02
887 46 0.03
888 52 0.03
889 442 0.24
890 4 0.00
891 2 0.00
895 2 0.00
896 98 0.05
897 287 0.16
898 25 0.01
900 4 0.00
902 44 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (869 bp):
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCC
GCCCCCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGGTGATGGTG
CCCCGGGCAAAAAAAAATATGGCACCAGCACATGCCTAAGCCCAGCATGTGCACCCGCAACCCTC
GGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGC
CGGGATATGTCGGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAATCTGGTCAGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGATGAAACGAGCGGGCGGGCGGCACT
ACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCAC
ATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCATGTGAAGTTTCATGGCAGACGACTTGTTTTCTATTTTTCACGATTTTTAAAACTTTT
TACGGTTCAGGATTTTTTTAAAATTCTTTTAGAAGGATTTTTGGCCCCAAATTTGGTAGACGTGA
TCCTTGTATTTTTGTTGAGCACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTTAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCAAGGTTTGATGAG
Found at i:453727 original size:26 final size:26
Alignment explanation
Indices: 453691--453743 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
453681 CTGGTTTGAT
453691 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
453717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
453743 C
1 C
453744 CAAGTCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:460472 original size:26 final size:26
Alignment explanation
Indices: 460432--460484 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
460422 CTGGTCCGAT
*
460432 CTTACACTGGTAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
460458 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
460484 C
1 C
460485 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:467516 original size:26 final size:26
Alignment explanation
Indices: 467487--467539 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
467477 CCGGTCCGAT
467487 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
467513 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
467539 C
1 C
467540 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:470555 original size:420 final size:419
Alignment explanation
Indices: 469769--470610 Score: 1474
Period size: 420 Copynumber: 2.0 Consensus size: 419
469759 TTTATACAAT
* *
469769 GGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
1 GGTCCCTTAAGCCTTCATGTGAAGTTTCAGGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
* * *
469834 TGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTTAGAAGGATTTTTGGCATCAAACTTG
66 TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCATCAAACTTG
*
469899 GCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAATAAAATTCAGCTAAAAACTCGAAGTGTA
131 GCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAATAAAATTCAGCTAAAAACTCAAAGTGTA
469964 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCACACACTTTAATGGCTACTGGCAGCA
196 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCACACACTTTAATGGCTACTGGCAGCA
*
470029 AACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGT
261 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGT
** *
470094 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGGGCACAACCCCCCCAG-CCC
326 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC-ACCCCCCC-GCCCC
* *
470158 CCAATCGTCGGAACCCCAATGCTGTCGATCA
389 CCAATCGTCGGAACCCCAATGCCGCCGATCA
* * *
470189 GGTCCCTTAAGCCTTCATGTGAAGTTTCAGGGCAAGATGACTCGTTTTTTATTTTTCATGATTTT
1 GGTCCCTTAAGCCTTCATGTGAAGTTTCAGGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
470254 TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCATCAAACTTG
66 TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCATCAAACTTG
*
470319 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA-AACAATTCAGCTAAAAACTCAAAGTGT
131 GCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAATAA-AATTCAGCTAAAAACTCAAAGTGT
*
470383 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
195 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCACACACTTTAATGGCTACTGGCAGC
470448 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
260 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
470513 -GGCCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCC
325 TGG-CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCC
470577 CCAATCGTCGGAACCCCAATGCCGCCGATCA
389 CCAATCGTCGGAACCCCAATGCCGCCGATCA
470608 GGT
1 GGT
470611 TCTCCGACGA
Statistics
Matches: 402, Mismatches: 17, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
418 1 0.00
419 47 0.12
420 354 0.88
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (419 bp):
GGTCCCTTAAGCCTTCATGTGAAGTTTCAGGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCATCAAACTTG
GCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAATAAAATTCAGCTAAAAACTCAAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCACACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGT
GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCCCC
AATCGTCGGAACCCCAATGCCGCCGATCA
Found at i:470749 original size:26 final size:26
Alignment explanation
Indices: 470720--470770 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
470710 CCAACCTTAC
*
470720 ACTGGGAGTGAACTCCATATGCCTAG
1 ACTGGGAATGAACTCCATATGCCTAG
*
470746 ACTGGGAATGAACTCCGTATGCCTA
1 ACTGGGAATGAACTCCATATGCCTA
470771 AGTCAGCCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (26 bp):
ACTGGGAATGAACTCCATATGCCTAG
Found at i:471632 original size:26 final size:26
Alignment explanation
Indices: 471603--471655 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
471593 CCGGTCCGAT
471603 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
471629 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
471655 C
1 C
471656 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:472379 original size:893 final size:893
Alignment explanation
Indices: 470189--474403 Score: 5782
Period size: 894 Copynumber: 4.7 Consensus size: 893
470179 CTGTCGATCA
* *
470189 GGTCCCTTAAGCCTTCATGTGAAGTTTCAGGGCAAGATGACTCGTTTTTTATTTTTCATGATTTT
1 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
**
470254 TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCATCAAACTTG
66 TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
470319 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAACAATTCAGCTAAAAACTCAAAGTGT
131 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC-ATTCAGCTAAAAACTCAAAGTGT
470383 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
195 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
470448 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
260 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
470513 GGCCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCCC
325 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCC
*
470578 CAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCAG
389 CAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCA-CGATGGTGCCCCAG
* * * *
470643 GTGAAAAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCACCCACAACCCTCGGTCCG
453 G-CAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCG
* * * * * *
470708 ATCCAACCTTACACTGGGAGTGAACTCCATATGCCTAGACTGGGAATGAACTCCGTATGCCTAAG
517 GTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
470773 TCAGCCCATGAAACGAGCGTGCAGGTGCTCAACCGACCAGAGGAGCAGGATGCGCAAGCCAGGGA
582 TCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
** * ** * * * *
470838 TCGGTCGGGTCCCCCTTGTGTTCTACCGATCATGCTACCGCAACCCT-TGATCCGACCCAATCTT
647 TCGACCGGGTCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCAG-TCCGACCCAATCTT
* * * * *
470902 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGGGCGAGCAGGCATTACG
711 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * *
470967 TCGGCCAGAGAGGTAGGTTGCGCAAG-C-T-G-T-G-GAGGGTGGTAGGTGGGTTTAGGCACATC
776 CCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * *
471026 TTCATATTTCTGT-CGTGCCAATACCATTTTTATCACTTGTAAATTCATACAAT
841 TTCATATTTCT-TCCATGCCAATGCCATTTTTATCGCTTGTAAATTCATACAAT
* * *
471079 GCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCATGATTTT
1 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
* *
471144 TAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
66 TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * * * *
471209 GTAAAAGTGATCCTTGTATTTTTGTTGGCATGCTCAAAAACATTTAGCTAAAAAATCAAAGTGTA
131 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTA
** * *
471274 CAAGATTTTAAGACCATTCGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCA
196 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
471339 AACCTGTAAAATCTCAAAAGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATCGAG
261 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
471403 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCACCCCCCA
326 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCA
* * * *
471468 ATCGTCGGAACTCCAATGCCACTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGGC
391 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-ACGATGGTGCCCCAGGC
* * *
471533 AAAAAAAAGTGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCTTCGGTCCGGT
455 AAAAAAAA-TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
*
471598 CCGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
519 CCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * *** *
471663 AACCCACAAAATGAGTGTGCGGGTATTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATC
584 AACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC
* * * * * * * ** **
471728 GACCAGGTACCCCCTATGTGCTGCCGATCTTGCTGCCACAACCCTCATTCCGGTCTGATCTTAGA
649 GACCGGGTCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCAGTCCGACCCAATCTTAGA
*
471793 CTGGGAATGAACTCCGTATGCCTAAGCCAGCCGACGAAACGAGCGGGCGGGCGGGCACTACGCCG
714 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCG
*
471858 GCTAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-TC
779 GCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
471922 ATATTTTTTCCATGACAATGCCATTTTTATGGCTTGTAAATTCATACCAT
844 ATATTTCTTCCATGCCAATGCCATTTTTATCGCTTGTAAATTCATACAAT
** * * *
471972 GGTCCCTTAAGCCTTCATACGAAGTTTCATGCCAAGATGACTCGTTTTTTATTTTTCATGGTTTT
1 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
* * * * *
472037 TGGAACTTTTTACTGTTTGAGATTTTTTTAAAATTCTTTCAGAAGGATTTTTGGCCCCAAACTTG
66 TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* *
472102 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTA
131 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTA
* *
472167 -GAGCATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGC
196 CAAG-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
472231 AAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAG
260 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AG
* * * * *
472296 GGGGCAAATATAAGGACCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-GCCCC-CCCCA
324 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCC
* * *** * *
472359 CAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTTCGGTGATGGTGCCTCGG
389 CAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC-TCCACGATGGTGCCCCAG
* * * * * * *
472424 GCTAAAAAAATGCGACAGCAGCACATGCCCGAGCCTAGCATGTGCACCCGTAACCCTCGGTCTGA
453 GCAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGG
* **
472489 TCTGATCTTACACTGGGAATGAACTCCGTACACTTAGACTGGGAATGAACTCCGTATGCCTAAGT
518 TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
472554 CAACCCATGGAATAAGCGTGCGGGCGCTCAGTCGGCCAGAAGGGCAGGATACGCAAGCTGGGGAT
583 CAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* ** * *
472619 CGACCGGGTCCCCCCCTACGTGCTACGGATCCTGCTACCGTAACCATTAGTCC-AGCCCAATCTT
648 CGACCGGGT-CCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCAGTCCGA-CCCAATCTT
* * *
472683 AGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGTGGGCGGGCGGGCACTAAG
711 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
** *
472748 GAGGCCAGAGAGTCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
776 CCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
472813 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
841 TTCATATTTCTTCCATGCCAATGCCATTTTTATCGCTTGTAAATTCATACAAT
* *
472866 GGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCGTTTTTTATTTTTCACGATTTT
1 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
** **
472931 CAAAACTTTTTACGGTTC-AGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTATCCCCAAACTT
66 TGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* * * * *
472995 GGTAGACGTGATCCTTTTATTTTTTTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
130 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGT
* * * *
473060 ACAAGATTTTGTGACCATTTGACAAATGTGTCCCCATTTAAGACACTTTAATGGCCACTGGCAGC
195 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
473125 AATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCAAGGTTTGATGAGGGATAGG
260 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
**
473190 GGGCCAATATAAGGGCCAAGTACCAGCACCCACCCATTTCACATCATGTGCGCACACCCCCTGCT
325 GGGCCAATATAAGGGCCAAGTACCAG----CACCCATCGCACATCATGTGCGCACACCCCC--C-
* *
473255 CCACCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--CG--G-T----GATTGTG
383 GC-CCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCACGATGGTG
* *
473310 CCCCAGGCGAAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCT
447 CCCCAGGC--AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCT
* * * * * *
473375 TGATCCGGTCCGATCTTACATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATAC
510 CGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* *
473440 GCCTAAGACAACCTATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
575 GCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* * * * * * *
473505 CCGGGGATCAACCGAGTCTCCCCCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCCGATC
640 CCGGGGATCGACCGGGTC-CCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCAGTCCGACC
** * * *
473570 TGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGG
704 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * *
473635 CACTACGCTGGCCAGAGAGGCGGGATGTGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
769 CACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** *
473700 GCACATCTTCATATTTCTACTGTGCCAATGCCATTATTATCGCTTGTAAATTCATACAAT
834 GCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTATCGCTTGTAAATTCATACAAT
* * * *
473760 GGTCCCTTAAGCATTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTATGATTTT
1 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
* * * *
473825 TGAAACTTTTTACGGTTCGGGATTTTTTTAAAAATTTTTCAAAAGGTGTTTTGGCCCCAAACTTG
66 TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * *
473890 GTAGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAGATTCAGCTAAAAACTCAAACTGTA
131 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTA
* * *
473955 CAGGATTTTGTGACCATTTGTAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCA
196 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
474020 AACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
261 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
474085 GGCCGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCA
326 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCA
* * * ** * *
474150 ATCGTCAGAACCCCAATACCGTCGGTCAGGTTCTCCGGTGATGCTCCAACAATGGTGCCCCGGGT
391 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-ACGATGGTGCCCCAGG-
* * * *
474215 AAAAACAAAATGCGGCACCGGCACATGCTCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGG
454 CAAAA-AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGG
* * * * * *
474280 TCCGGTCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTTCGTACGCTTAAGT
518 TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
474345 CAACCCACGAAACGATCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAAGATGCACAAGCC
583 CAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
474404 AGGTGTCACA
Statistics
Matches: 2918, Mismatches: 359, Indels: 89
0.87 0.11 0.03
Matches are distributed among these distances:
886 37 0.01
887 10 0.00
888 358 0.12
889 85 0.03
890 293 0.10
891 7 0.00
892 184 0.06
893 552 0.19
894 1092 0.37
895 52 0.02
896 5 0.00
897 196 0.07
898 4 0.00
900 3 0.00
902 2 0.00
903 38 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (893 bp):
GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCA
ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCACGATGGTGCCCCAGGCA
AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCC
GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA
CCGGGTCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCAGTCCGACCCAATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGC
CAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTTCCATGCCAATGCCATTTTTATCGCTTGTAAATTCATACAAT
Found at i:472531 original size:26 final size:26
Alignment explanation
Indices: 472495--472544 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
472485 CTGATCTGAT
472495 CTTACACTGGGAATGAACTCCGTACA
1 CTTACACTGGGAATGAACTCCGTACA
*
472521 CTTAGACTGGGAATGAACTCCGTA
1 CTTACACTGGGAATGAACTCCGTA
472545 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTACA
Found at i:474315 original size:26 final size:26
Alignment explanation
Indices: 474286--474341 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
474276 CCGGTCCGGT
* *
474286 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATAAACTCCGTACG
* * *
474312 CTTAGACTGGGAATAAACTTCGTACG
1 CTTACACTAGGAATAAACTCCGTACG
474338 CTTA
1 CTTA
474342 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTACACTAGGAATAAACTCCGTACG
Found at i:480834 original size:26 final size:26
Alignment explanation
Indices: 480805--480860 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
480795 CCGATCCAAT
480805 CTTACACTGGGAATGAACTCCGTAAG
1 CTTACACTGGGAATGAACTCCGTAAG
* *
480831 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTAAG
480857 CTTA
1 CTTA
480861 AGTTAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTAAG
Found at i:484782 original size:896 final size:893
Alignment explanation
Indices: 482476--485230 Score: 3616
Period size: 877 Copynumber: 3.1 Consensus size: 893
482466 GATCTTACAC
* * * * ** *
482476 TGGGAATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGCATGCAGGCACTCAACTAGTCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAG
* * * * * ** *
482541 AGGGGCAAGATGTGCAAGTC-GGGTTCGGTCGGGTCCCCCCTGCGTGCTGCGGATCCTGCTGCCA
66 AGGGGCAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCCTGCGTGCTACCAATCCTACTGCCA
* * *
482605 CAACCCT---T---A--C---CTTGGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCGATGA
131 CAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGA
* * *
482658 AACGAA-TGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
195 AAC-AAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATA
*
482722 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTTTTATGGCTTG
259 GGGTGGTAGGTGGGTTT-GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
482787 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCT
323 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCT-GTTTTCT
* * ** * *
482851 ATTTTTCATAATTTTTAAAAATTTTTACGGTTCGTTATTTTTTAAAAATTGTTTCAGAAGGAATT
387 ATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCAGAAGGAGTT
* * * *
482916 TT-GCCCGCAAACTTAGCAAACATGATCCTTATATTTTTTTTGGCATGCACAAAAAAATTCAGCT
451 TTGGCCC-CAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * *
482980 AAAAACTCGAAATGTACAGGATTTTGTGAACATTTGAAAAAAGTGTCCCAATTTCGGACACTTTA
515 AAAAACTCGAAATGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* **
483045 ATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
580 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
483110 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
645 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
483175 CACCCCCCGCACCCCC-ATCGTCGGAACCCTAATGCCGTCGATTAGGTTCTTCGGTGATGCTCCG
710 CACCCCCCGCCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCG
** * * * * *
483239 ATGATGGTTCCCCGGGCGAAAAGAAATGTAGCACCAGCACATGCTCGAGCCCAGCATGTGCACCC
775 GCGATGGTGCCCCAGGC-AAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
* * * * * *
483304 ACAACCCTCAGTCCGATCCAATCTTACACTGGGAATGAACTCCATATGCTTAGAC
839 GCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGAA
* * * * * *
483359 TGGGAATGAACTCTGTAAGCCTAAGTCAACCCACGAAACTAGCATGCGGGCGCT-AAGCCGACCA
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAA-CCGGCCA
* * * * * *
483423 GAGGGGCAAGATACGTAAG-CTGGGGATCGATTGGGTCACCCCCTACGTGCTACCGATCCTACTG
65 GAGGGGCAGGATGCGTAAGTC-GGGGATCGGTCGGGTC-CCCCCTGCGTGCTACCAATCCTACTG
** * * *
483487 TGACAACCCTCGATCCAATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTCAGCCAACCGAC
128 CCACAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGAC
* * * *
483552 GAAACTAGCGGGCGGGCAGGCACTACGCCGGCGAGAGAGACGAGATGCGCAAGCCGTGGATC-A-
193 GAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGAT
* * * *
483615 A------TA---GGG--T-G----TCTTCATATTTCTGCCATGCCAGTACTATTTTTATGGGTTG
258 AGGGTGGTAGGTGGGTTTGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
* *
483664 TAAATTCATACAATGGTCCCTTAAGCCTTCATCTGAAGTTTCATGGCAAGACGACTTGTTTTCTA
323 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCTGTTTTCTA
* * * *
483729 TTTTTCATGATTTTTGAAACTTTTTACGATTTGGGATTTTTTTAAAATTTTTTTAGAA-GACGTT
388 TTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGA-GTT
** * *
483793 TTGGTGCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAAGTACAAAAAAATTCAGCTA
451 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* * * **
483858 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGCATCCCCATTTCAGACACTTTAA
516 AAAACTCGAAATGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
483923 TGGCTACTGGCAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCAAGGTT
581 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* * *
483988 TGATGAGGCATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCAC
646 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
484053 ACCCCCCCGCCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCG
711 A-CCCCCCGCCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCG
* * *
484118 GCGATGGTGCCCCAGGCAAAAAAAAATATGGCTCCAGCACATGCCCGAGCCCAGCAAGTGCACCC
775 GCGATGGTGCCCCAGGC-AAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
*
484183 GTAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGAA
839 GCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGAA
* * * *
484238 TGGGAATGAACTCCCTATGCCTAAGTCAACCTACGAAACGAGCGTGCAGGTGCTCAACCGGCTAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAG
* * * * * *
484303 -GGGGCAGGATGCGTAAGTCGAGGATCGGCCGGGTCCACCCTGCGTGCTCCCAATCTTGCTGCCA
66 AGGGGCAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCCTGCGTGCTACCAATCCTACTGCCA
** ** * *
484367 CAACCCTC-AGTCTGATCGGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGACAA
131 CAACCCTCGA-TCCAATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGA
* * * *
484431 AACAAGCGGGCGAGCGGGCACTACGTCGGCCAGAGAGGCGAGACGCGCAAGCCATGGATCGATAG
195 AACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAG
484496 GGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
260 GGTGGTAGGTGGGTTT-GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
* *
484561 AAAGTCATACAATGGTCCCTTAAGCCTTCATGGGAAGTTTCATGGCAAGACGACCTGTTTTCTAT
324 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCTGTTTTCTAT
*
484626 TTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATCTTTTTAAAATTTTTTCAGAAGGAGTTTT
389 TTTTCATGATTTTTAAAACTTTTTACGGTTCGGGAT-TTTTTAAAATTTTTTCAGAAGGAGTTTT
* * *
484691 GGCCCCAAACTCGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAA
453 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
484756 AACTCGAAATGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
518 AACTCGAAATGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
484821 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCAAGGTTTG
583 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
*
484886 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCACA-
648 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * *
484950 -------CCCCCCAATCGCCGAAACCCCAATGCCGCCGGTCAGGTTC-TCGATGATGCTCCCGCG
713 CCCCCGCCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCGGCG
* * **
485007 ATGGTGCCCCGAGTG-AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGGACTTGC
778 ATGGTGCCCC-AG-GCAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
* * * *
485071 AACCCTCGGT-TGGGTCTGATCTTACATTGGGAATGAACTCCGTATGCTTAGAT
841 AACCCTCGGTCT-GGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGAA
* *
485124 TGGGAATGAACTCCGTATGCC-AAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAG
* *
485188 AGGGGTAGGAGGCGTAAGTCGGGGATCGGTCGGGTCCCCCCTG
66 AGGGGCAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCCTG
485231 TGTCACACCC
Statistics
Matches: 1621, Mismatches: 200, Indels: 99
0.84 0.10 0.05
Matches are distributed among these distances:
876 3 0.00
877 500 0.31
878 50 0.03
879 201 0.12
880 2 0.00
881 1 0.00
882 3 0.00
883 69 0.04
884 12 0.01
885 74 0.05
886 170 0.10
887 39 0.02
888 7 0.00
890 1 0.00
891 1 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 3 0.00
896 479 0.30
897 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (893 bp):
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAG
AGGGGCAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCCTGCGTGCTACCAATCCTACTGCCA
CAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
ACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCTGTTTTCTATTT
TTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
CCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAATGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCGCCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCGGCGATG
GTGCCCCAGGCAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCC
TCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGAA
Found at i:485127 original size:26 final size:26
Alignment explanation
Indices: 485091--485143 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
485081 TGGGTCTGAT
485091 CTTACATTGGGAATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
*
485117 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
485143 C
1 C
485144 CAAGTCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACATTGGGAATGAACTCCGTATG
Found at i:487667 original size:9 final size:9
Alignment explanation
Indices: 487653--487677 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
487643 TCACCCTTGG
487653 AGGTGCTAA
1 AGGTGCTAA
487662 AGGTGCTAA
1 AGGTGCTAA
487671 AGGTGCT
1 AGGTGCT
487678 GAAGACCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.28, C:0.12, G:0.36, T:0.24
Consensus pattern (9 bp):
AGGTGCTAA
Found at i:493547 original size:866 final size:863
Alignment explanation
Indices: 490575--493857 Score: 4122
Period size: 869 Copynumber: 3.8 Consensus size: 863
490565 GATCTGGTCT
* * *
490575 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGG-CGGGCAGG
1 GATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGC-GGAC--G--GG
* * *
490639 CACTATGTCGGCCAGAGAGGCAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
61 CACTACGTCGGCCA-AAAGGCA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
490704 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
124 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
490769 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
189 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
* *
490834 CTTTTTACGGTTC-GAGA-TTTCTTAAAACTTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTA
254 CTTTTTACGGTTCAG-GATTTTTTTAAAA-TTTTTTCAGAAGGAG-TTTGGCCCCAAACTTGGTA
* * *
490897 GACGTGATCCTTGTA-TTTTTTTGGTATGCACAAAAAAATTTAGATAAAAACTCGAAGTGTACAG
316 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
*
490961 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAAC
381 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
491026 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
446 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGC
** *
491091 CAATATAAGGGCCAAGTACCAAAACCCATCGA-ACATCATGTGTGCACACCCCCTCCC-CCGCTC
511 CAATATAAGGGCCAAGTACCAGCACCCATC-ACACATCATGTGCGCACACCCCC-CCCGCC-C-C
* *
491154 GCCCAATCG-CTGGAACCCCAATACTGCCGGTCAGGTTCTCCGACGATGCTTCAGCGATGGTGCC
572 -CCCAATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCAGCGATGGTGCC
* * * * * *
491218 TCGGGTGAAAAAAAACATGTGGCACCAGCATATGCCCGAGCCCAGCATGTGCA-C-CAGTAACCC
635 CCGAGCGAAAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCTCAG-AA---
** * * * * * *
491281 TCGGTCTGGTCC-GAT-CTTACATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGT
696 T-GAAC---TCCAAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
* * * * * * *
491344 GCGTACGGGGGCTCAACTGACAAGAGGGGCAGGATGCGA-AAG-TCGGGGATCGATTGGGTCCCC
757 GCGTACGGGCGCTCAGCAGGCCAGAGGGGCAGGATGC-ACAAGCT-GGGGATCGGTCGGGT-CCC
* * * * *
491407 CCCTACGTGCTACCGATCCTGCTGTCACAACCCTCGGTCTAATCC
819 CCCTACGTGCTGCAGATCCTGCTGCCACAACCCTCGGTCCAGTCC
* **
491452 AATCTTAGACTGGGAATGAACTCTATATACCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGA----CGGGC
**
491517 ACTACGTCGGCCAAAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
62 ACTACGTCGGCCAAA-AGG-CAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
491582 CACATCTTCATATTTCTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACCATGGTCCC
125 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
491647 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTTGAAAC
190 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAAC
* * *
491712 TTTTTACGATTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
255 TTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGA-GTTTGGCCCCAAACTTGGTAGAC
* ** * *
491777 ATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAGCACTCGAAATGTATAGGAT
319 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* * * * *
491842 TTTATGAGCATTTGAAAAAAGTGTCCCTATTTCAGACATTTTAATGGCTACTGGCAGCCAACCTG
384 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
**
491907 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAA
449 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAA
* * * *
491972 TTTAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGCCCCCCCAATC
514 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCGCCCCCCCAATC
* * ** * **
492037 GTCGGAACCCCAAT-CCGTCGATCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCC-AG-GTG
579 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCAGCGATGGTGCCCCGAGCGAA
* *
492099 AAAAAAAATGCGGCACCAGCCCATG-CTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTACGGT
644 AAAAAAAATGTGGCACCAGCACATGCCT-GAGCCCAGCATGT------GC-A----C----C---
* *
492163 TTGATTTTACACTGGGAATGAACTCTAAATGCTTAGACTGGGAATGAACTCCTTATGCCTAAGTC
690 -------T-CA----GAATGAACTCCAAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * **
492228 AACCCACGAAATGAGCATACAGATGCTCAGCCA-GCCAGAGGGGCAGGATGCACAAGCTGGGGAT
743 AACCCACGAAATGAGCGTACGGGCGCTCAG-CAGGCCAGAGGGGCAGGATGCACAAGCTGGGGAT
* * * * * *
492292 CCGTCGGGTCCCCCCTCCGTGCTGCTGATCCTGCTACCATAACCCTCGGTCCATTCC
807 CGGTCGGGTCCCCCCTACGTGCTGCAGATCCTGCTGCCACAACCCTCGGTCCAGTCC
* * * * *
492349 GATCTTATACCGGAAATGAACTCCGTATACCTAAGCCAACCGATGAAATGA---G-C-GG----A
1 GATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGACGGGCACTA
492405 -------C----GG--GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
66 CGTCGGCCAAAAGGCAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
492457 TTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
131 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
492522 CTTCATGTGAAGTTTAATGGCAAGACGACTAGTTTTTTATTTTTCACT-ATTTTCAAAACTTTTT
196 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTAAAACTTTTT
* *
492586 ACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGATTTCTGGCCCCAAACTTGGTAGACGTGAT
260 ACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTT-TGGCCCCAAACTTGGTAGACGTGAT
*
492651 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
324 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
* * * * *
492716 GACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACGACTACTGACAGCAAACCTATAAAA
389 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
492781 TCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGATTTGTTGAGGGATAGGGGGCCAATATAA
454 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAA
* * * *
492846 GGGCCAAGAACCACCACCCATCACACATCATGTCCGCACACCCCCCCCGCCCCCCCAATCGTCGA
519 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCGCCCCCCCAATCGTCGG
* *
492911 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGAGCGAAAAAAA
584 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCAGCGATGGTGCCCCGAGCGAAAAAAA
* *
492976 AAATGTGGCACCAGCACAAGCCTGAGCCCAGCATGTGCACCTCAGAATGAACTCCATATGCTTAG
649 AAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCTCAGAATGAACTCCAAATGCTTAG
* * * * * *
493041 ACTAGGAATGAACTCCGTATGCCTAAGTCAACCGATGAAATGAGTGTGCGGGCGCTTAGCAGGCC
714 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCAGGCC
* * *
493106 AGAGGGGCAGAATGCACAAGCTGGGGATCGGTCGGGTCCCCCTTTCGTGCTGCAGATCCTGCTGC
779 AGAGGGGCAGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCCTACGTGCTGCAGATCCTGCTGC
* * *
493171 CACAACCCTTGGTCCGGTCT
844 CACAACCCTCGGTCCAGTCC
* * * *
493191 GATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACAGACGAAATGAGCGGACGGGCACTA
1 GATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGACGGGCACTA
* *
493256 CGCCGGCCAGAAAGGCGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
66 CGTCGGCCA-AAAGGC-AGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
493321 TCATCATATTTCTGCAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
129 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
493386 GCCTTCATGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
194 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTT
** *
493451 TACGGTTTTGGATTTTTTTAAAAATTTTTCAGAAGGAGTTTGGCCCCAAACTTGGTAGACGTGAT
259 TACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTGGCCCCAAACTTGGTAGACGTGAT
*
493516 CCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACACGATTTTG
324 CCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
* *
493581 TGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
388 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * ** *
493646 ATCTCAAATGCTCTTTATGGGGGTGTGAGCTCAAGAGGA-TTGATGAGGGATAGAGGGCCAATAT
453 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GATTTGATGAGGGATAGGGGGCCAATAT
* * *
493710 AAGGCCCAAGTACCAGCACCCATCGCACATCATGT-C-CACACACCCCCCGCCCCCCCAATCGTC
517 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCGCCCCCCCAATCGTC
* * *
493773 GGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGC-TCAGGCGACGGTGCCCCGGGCG--AA
582 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCA-GCGATGGTGCCCCGAGCGAAAA
493835 AAAAAATGTGGCACCAGCACATG
646 AAAAAATGTGGCACCAGCACATG
493858 TTCAAGCCCA
Statistics
Matches: 2103, Mismatches: 216, Indels: 189
0.84 0.09 0.08
Matches are distributed among these distances:
841 2 0.00
842 188 0.09
845 1 0.00
846 3 0.00
847 3 0.00
851 1 0.00
857 1 0.00
858 1 0.00
861 1 0.00
862 24 0.01
863 4 0.00
864 77 0.04
865 35 0.02
866 404 0.19
867 2 0.00
868 3 0.00
869 465 0.22
870 39 0.02
871 3 0.00
872 73 0.03
873 3 0.00
874 36 0.02
875 19 0.01
876 5 0.00
877 296 0.14
878 223 0.11
879 2 0.00
881 1 0.00
884 1 0.00
888 3 0.00
889 1 0.00
894 1 0.00
896 2 0.00
897 86 0.04
898 84 0.04
899 4 0.00
900 3 0.00
903 2 0.00
904 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (863 bp):
GATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGACGGGCACTA
CGTCGGCCAAAAGGCAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTA
CGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCGCCCCCCCAATCGTCGGAA
CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCAGCGATGGTGCCCCGAGCGAAAAAAAAA
ATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCTCAGAATGAACTCCAAATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCAGGCCAG
AGGGGCAGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCCTACGTGCTGCAGATCCTGCTGCCA
CAACCCTCGGTCCAGTCC
Found at i:494664 original size:26 final size:26
Alignment explanation
Indices: 494635--494684 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
494625 TCGGTCCAAT
*
494635 CTTACACT-GAGAATGAATTCCGTAAG
1 CTTACACTAG-GAATGAACTCCGTAAG
*
494661 CTTAGACTAGGAATGAACTCCGTA
1 CTTACACTAGGAATGAACTCCGTA
494685 TGCCTAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTAAG
Found at i:495940 original size:901 final size:894
Alignment explanation
Indices: 493998--496576 Score: 3553
Period size: 901 Copynumber: 2.9 Consensus size: 894
493988 TCAGCCAACT
* * *
493998 AGAGGGGCAGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATA
*
494063 TTTCTGCAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* *
494128 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* * ** *
494193 GGGATTTTTTTAAAATTTTTTAAGAAGGAGTTTTGGAACCAAACTTGGTAAACATGATCCTTGTA
196 GGGATTTTTTTAAAATTTTTCAA-AAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
** * *
494258 TTTTTGTTGGCATGCGCAAAAAAATTCAGCTAAGAAG-TTGAAGTGTATAGGATTTTGTGGCCAT
260 TTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA-AAGCTCGAAGTGTATAGGATTTTGTGACCAT
* *
494322 TTGAAAGAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
324 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * * *
494387 ATGCTCTTTAAGGGGGTGTGAGC-TCAAGAGGATTGATGAGGGATAGAGGGTCAATATAAGGCCC
389 ATGCTCTTTAAGAGGGTGTGAGCTTC-A-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
494451 AAGTACCAGCACCTATCGCACATCATGT-CCACACACCCCCGCC-CC-CCCAATCGTCGGAACCC
452 AAGTACCAGCACCCATCGCACATCATGTGCCACACACCCCCCCCGCCACCCAATCGTCGGAACCC
* * *
494513 CAATGCTGTCGGTCAGGTTCTCCGACGATGCTCTGGCGACGGTGCCCCGGGCGAAAAACAATGTG
517 CAATGC-CTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGTG
* * * ** * **
494578 GCACCAGCACATGTTCAAGCCCAGCATATGCACTTGTAACCCTCTATTCGGTCCAATCTTACACT
581 GCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGTCCAATCTTACACT
* * * * * *
494643 GAGAATGAATTCCGTAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATG
646 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATG
* * * *
494708 AGCGTGCGGGCGCTCAGCCAGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGTCAACCC
711 AGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGGTC-CCCC
* * * * * *
494773 TTACGTGCTGTCGATCCTACTGCCACAACCCTCGATCTGGTCCAATCTTAAACTAAGAGTGAACT
775 CTGCATGCTGTCGATCCTACTGCAACAACCCTCGATCCGGTCCAATCTTAAACTAAGAATGAACT
* *
494838 CCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCAGGGGGGCACTACACCGACC
840 CCGTACGCCTAAGCCAACCGACGAAACGAGCGGGCAGGGGGGCACTACACCGACC
*
494893 AGAGAGGCAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATA
1 AGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATA
*
494958 TTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
*
495023 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* * * *
495088 GGGATTTTTTTTTAAGTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCGTTGGA
196 GGGA-TTTTTTTAAAATTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
* *
495153 TTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAGCTCGAAGTGAATAGGATTTTGTGACCATT
260 TTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAGCTCGAAGTGTATAGGATTTTGTGACCATT
* * *
495218 TGAAAAAAGTGTCTCTATTTCAGACACTTTAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAA
325 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
495283 TGCTCTTTAAAAGGGTGTGAGCTATCAAGGTTTGGTGAGGGATAGGGGGCCAACATAAGGGCCAA
390 TGCTCTTTAAGAGGGTGTGAGCT-TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
** * * * *
495348 GTACCAGCACCCATTACACATCATGTGCGCACACCCCCTCCCCCGCCACGCCAATAGCCGAAACC
454 GTACCAGCACCCATCGCACATCATGTGC-CACACACCC-CCCCCGCCAC-CCAATCGTCGGAACC
* * * * * *
495413 CCAATGCCCCGGTCAGGTCCTCCGACGATGCTCCGGTGATGGTGCCCCGGGCAAAAAAAAAGTGC
516 CCAATGCCTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAA-TGT
* * *
495478 GGCACCAGCACATGCTCGAGCCCAACATGTGCACCCACAACCCTCGG-TCTGCTCCAATCTTACA
580 GGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTTC-GGTCCAATCTTACA
* *
495542 CTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
644 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
* * * * *
495607 TGAGCGTGCGGGGGCTCAGCCGGCCAGTGAGGCAGGATGCACAAGCCGGGGATCGACCAAGTCCC
709 TGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCAGGATGCACAAGCCGGGGATCGACC-GGTCCC
* ** * **
495672 CCCTGCATGCTG-CTGATCCTACTGCAACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
773 CCCTGCATGCTGTC-GATCCTACTGCAACAACCCTCGATCCGGTCCAATCTTAAACTAAGAATGA
* * * ** * *
495736 ACTTCGTACGCCTAAGCCAACCGATGAAATGAGCGGGC-GGGCGGGCACTACGTCGGCT
837 ACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGGCAGGG-GGGCACTACACCGACC
* * * * *
495794 AGGGAGGCCGGATGCGCAAGCTGTGGATCAATAGGGTGGTTGGTGGATTTAGGCACATCTTCATA
1 AGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATA
*
495859 TTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * * * *
495924 GTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTATTAAAATTTTTTACGGTTT
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* * * *
495989 GAGA-TTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCCAACTTGGTGGACATGGTCCTTGTA
196 GGGATTTTTTTAAAA-TTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
* ** * * * *
496053 TTCTTGTTGGCACACAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTTATCAT
260 TTTTTGTTGGCATGC-AAAAAAAAATTCAGCTAAAAGCTCGAAGTGTATAGGATTTTGTGACCAT
* * *
496118 TTGAAAAAAGTGTCCCCATTTCAGACCCTTTAATGGCTATTGGCAACAAACCTGTAAAATCTCAA
324 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * *
496183 ATGCTCCTTAAGAGGGTGTGA-CTTCTCGAGGTTTGATGAGGGATA-GGGGCCAGTACAAGGGCC
389 ATGCTCTTTAAGAGGGTGTGAGC-T-TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
496246 AAGTACCAGCACCCATCGCACATCATGTG-CACACAACCCCCCCCGCCCACCCCAATCGTCGGAA
452 AAGTACCAGCACCCATCGCACATCATGTGCCACAC-ACCCCCCCCG-CCA-CCCAATCGTCGGAA
* * *
496310 CCCCAATGCCGTCGATCAGGTTCTCCGACAATGCTCTGGCGATTGTGCCCCGGGCGAAAAAAAAT
514 CCCCAATGCC-TCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAAT
* * * * *
496375 GTGGTAGCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTTGGTTCGGTTCGATCTTAC
578 GTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGTCCAATCTTAC
*
496440 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
643 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
** *
496505 ATGAGCGTGCAAGCGCTCAGCCGACAAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGGGTCC
708 ATGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCAGGATGCACAAGCCGGGGATCGACC-GGTCC
496570 CCCCTGC
772 CCCCTGC
496577 GTATTGCCAA
Statistics
Matches: 1480, Mismatches: 181, Indels: 42
0.87 0.11 0.02
Matches are distributed among these distances:
894 3 0.00
895 416 0.28
896 18 0.01
897 10 0.01
898 15 0.01
899 215 0.15
900 200 0.14
901 600 0.41
902 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
AGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATA
TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
GGGATTTTTTTAAAATTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
TTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAGCTCGAAGTGTATAGGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGAGGGTGTGAGCTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCCACACACCCCCCCCGCCACCCAATCGTCGGAACCCCAAT
GCCTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGGCGAAAAAAAATGTGGCACC
AGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGTCCAATCTTACACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGT
GCGGGCGCTCAGCCGGCAAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGGTCCCCCCTGCAT
GCTGTCGATCCTACTGCAACAACCCTCGATCCGGTCCAATCTTAAACTAAGAATGAACTCCGTAC
GCCTAAGCCAACCGACGAAACGAGCGGGCAGGGGGGCACTACACCGACC
Found at i:496486 original size:26 final size:26
Alignment explanation
Indices: 496435--496487 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
496425 TCGGTTCGAT
**
496435 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
496461 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
496487 C
1 C
496488 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:498163 original size:491 final size:489
Alignment explanation
Indices: 497218--498185 Score: 1343
Period size: 491 Copynumber: 2.0 Consensus size: 489
497208 AAATGCTCTT
* *
497218 TAAGGGGGTGTGAGTTCGAAGGTTTGATGAGGGATAGGGGCTAATATAAGGGCCAAGTACCAGCA
1 TAAGGGGGTGTGAGTTCCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
497283 GCCATCGCACATCATGTGCGCACACCCCCCCACCCCCCAATCGCCGAAACCCCAATGCCGTCGGT
66 ACCATCGCACATCATGTACGCACACCCCCCCACCCCCCAATCACCGAAACCCCAATGCCGTCGGT
* * * ** * *
497348 CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCAGGCGAGAAAAATGTGGCACCGGTACATGC
131 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGGCGAAAAAAATACGGCACCAGCACATGC
* * * ***
497413 CCGAGCCCAGCATGTGCACCCGCAACCATCGGTTCGGTCCAATCTTAGATCGGGAATGAACTTTG
196 CCGAGCCCAGCATGTGCACCCACAACCATCGGTTCGATCCAATCTTACATCGGGAATGAACTCCA
* * *
497478 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCT
261 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATACGGGCGCT
* * * * * **
497543 CAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATTGGTCGGGTCCCCCCTATGTGCTGGCGA
326 CAGCCGGCCAGAGGGGCAGGATACACAAGCCGAGGATCGCTCGGGTCCCCCCTACGTGCTACCGA
* * ** * *
497608 TCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGC
391 TCCTGCTACCACAACCCTAGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATCCCTAAGC
497673 CAACCGATGAAACGAGCGGGCGAGCGGGCCAATA
456 CAACCGATGAAACGAGCGGGCGAGCGGGCCAATA
497707 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAG
1 TAAGGGGGTGTGAGTTC-CAAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAG
** *
497772 CAACCATCGCACATCATGTACGCACA-CCCCCTGCCCCCCAATCACCGGAACCCCAATGCCGTCG
64 CAACCATCGCACATCATGTACGCACACCCCCCCACCCCCCAATCACCGAAACCCCAATGCCGTCG
* * * *
497836 GTCAGGTTCTCCGATGATGCTTCGACGATGGTGCCCCGGGCGAAAAAAAAATACGGCACCAGCAT
129 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGGCG--AAAAAAATACGGCACCAGCAC
* *
497901 ATGCCTGAGCCCAGCATGTGCACCCACAACCTTCGG-TCTGATCCAATCTTACA-CTGGGAATGA
192 ATGCCCGAGCCCAGCATGTGCACCCACAACCATCGGTTC-GATCCAATCTTACATC-GGGAATGA
* ** * *
497964 ACTCCATATGCTTAGACTGGGAATGAACTTTGTATGCCTACGTCAACCAACGAAACGAGCATGCG
255 ACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATACG
* * *
498029 GGCGTTTAGCCGGCC-GAGGGGTAGGATACACAAGCCGAGGATCGACT-GGGTCCCCCCTACGTG
320 GGCGCTCAGCCGGCCAGAGGGGCAGGATACACAAGCCGAGGATCG-CTCGGGTCCCCCCTACGTG
* * * *
498092 CTACCGATCTTGCTGCCGCAACCCTAGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATC
384 CTACCGATCCTGCTACCACAACCCTAGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATC
498157 CCTAAGCCAACCGATGAAACGAGCGGGCG
449 CCTAAGCCAACCGATGAAACGAGCGGGCG
498186 GGCGAGCACT
Statistics
Matches: 417, Mismatches: 55, Indels: 12
0.86 0.11 0.02
Matches are distributed among these distances:
489 17 0.04
490 93 0.22
491 171 0.41
492 136 0.33
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (489 bp):
TAAGGGGGTGTGAGTTCCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCA
ACCATCGCACATCATGTACGCACACCCCCCCACCCCCCAATCACCGAAACCCCAATGCCGTCGGT
CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGGCGAAAAAAATACGGCACCAGCACATGC
CCGAGCCCAGCATGTGCACCCACAACCATCGGTTCGATCCAATCTTACATCGGGAATGAACTCCA
TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATACGGGCGCT
CAGCCGGCCAGAGGGGCAGGATACACAAGCCGAGGATCGCTCGGGTCCCCCCTACGTGCTACCGA
TCCTGCTACCACAACCCTAGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATCCCTAAGC
CAACCGATGAAACGAGCGGGCGAGCGGGCCAATA
Found at i:499678 original size:899 final size:893
Alignment explanation
Indices: 497705--500709 Score: 4184
Period size: 899 Copynumber: 3.4 Consensus size: 893
497695 AGCGGGCCAA
*
497705 TATAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACC
1 TATAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
497770 AGCAACCATCGCACATCATGTACGCACA-CCCCCTG-CCCCCCAATCACCGGAACCCCAATGCCG
66 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCAATCGCTGGAACCCCAATGCC-
* * * *
497833 TCGGTCAGGTTCTCCGATGATGCTTCGACGATGGTGCCCCGGGCGAAAAAAAAATACGGCACCAG
130 TCGGTAAGGTTCTCCGATGATGCTCCGATGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAG
* * * * *
497898 CATATGCCTGAGCCCAGCATGTGCACCCACAACCTTCGGTCTGATCCAATCTTACACTGGGAATG
195 CACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAATG
* *** * * *
497963 AACTCCATATGCTTAGACTGGGAATGAACTTTGTATGCCTACGTCAACCAACGAAACGAGCATGC
260 AACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAACGAGGA-GC
* * * *
498028 GGGCGTTTAGCCGGCC-GAGGGGTAGGATACACAAGCC-GAGGA-TCGACTGGGTCCCCCCTACG
324 GGGCGCTTAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGA-GATTGGAC-GGGTCCCCCCTACG
** * * **
498090 TGCTACCGATCTTGCTGCCGCAACCCTAGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTA
387 TGCTGTCGATCATGCTGCCGCAACCCT-GGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTA
* * * *
498155 TCCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGGCGGGATGC
451 TACCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
498220 GCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAA
516 GCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAA
* * * *
498285 TGCCATTTTTATGGCTTCTAAATTCATAGAATCGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGC
581 TGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * * *
498350 AAGAAGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTGCTGGAATTTTTTAAAA
645 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAGG-ATTTTTTAAAA
* *
498415 TTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATTCTTGTATTTTTGTTGGCATGC
709 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
498480 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
774 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
498545 CATTTCAGACACTTTAATGTCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTC
839 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * *
498600 TTTAAGGGGCTGTGAGTTCTCAAGGTTTGATAAGGGATAGAGGGCCAATATAAGGGCCAAGTA-C
1 TATAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
498664 AGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGCTGGAACCCCAATGCCG
66 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCAATCGCTGGAACCCCAATGCC-
* * * * * **
498729 CCGGTTAGGTTCTCCGACGATGCTCCG--GCAGTGGTGCCCTGGGCAAAAAAAAAAATTTGGCAC
130 TCGGTAAGGTTCTCCGATGATGCTCCGATG-A-TGGTGCCCCGGGC-GAAAAAAAAATGCGGCAC
* * * *
498792 CAGCACATGCCTGAGCCCAGCATGTGCACCCGTAACCCTCAGTCCGGTCCGATCTTACACAGGGA
192 CAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACACTGGGA
* * *
498857 ATGAACTCCGCATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAATGAGTG
257 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAACGAG-G
* *
498922 AGCGGGCGCTTAGCCTGCCAGAGGGGTAGGATGCGCAAGCCGGAGATTGGTCGGGTCCCCCCCTA
321 AGCGGGCGCTTAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGAGATTGGACGGGT-CCCCCCTA
* * * * *
498987 CGTGCTGTTGATCCTGCTACTGCAACCCTTGGTCTGATCTGATCTCAGACTGGGAATGAACTCCG
385 CGTGCTGTCGATCATGCTGCCGCAACCC-TGGTCTGATCTGATCTTAGACTGGGAATGAACTCCG
* * *
499052 TGTACCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGAAT
449 TATACCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
*
499117 GCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCGTCATATTTCTACCATGCC
514 GCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCC
*
499182 AATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCATGTGAAGTTTCATG
579 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-TTAAGCCTTCATGTGAAGTTTCATG
* * *
499247 GCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTGAA
643 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTTTT-AA
499312 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTCTT-TTGGCA
707 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT-TTGTTGGCA
* * *
499376 TGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTAT
771 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT
* *
499441 CCCCATTTCAAACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTC
836 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * *
499499 TATAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGACAAGTGCC
1 TATAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
499564 AGCACCCATTGCACATCATGTGCGCACA-CCCCCCG-CCCCCCAATCG-TCGGAACCCCGATGCC
66 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCAATCGCT-GGAACCCCAATGCC
* *
499626 TCCGGTAAGGTTCTCTGGTGATGCTCCGATGATGGTGCCCCGGGCG-AAAAAAAATGCGGCACCA
130 T-CGGTAAGGTTCTCCGATGATGCTCCGATGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCA
* * * *
499690 GCACATGCCCGAGCCCAGCATGTCCACCCGCAACCCTTGGTCCGATCCGATCTTACACTGGTAAT
194 GCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAAT
499755 GAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAACGAGCGTA
259 GAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAACGAG-G-A
* * ** * * * * *
499820 -CGGGCGCTCAGCCGGCCAGAAGGGCCGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCCTACA
322 GCGGGCGCTTAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGAGATTGGACGGGTCCCCCCTACG
* * *
499884 TGCTGTCGATCATGCTGCCACAACCC---TCT-ATCTGGTTCTTGGACTGGGAATGAACTCCGTA
387 TGCTGTCGATCATGCTGCCGCAACCCTGGTCTGATCT-GATCTTAGACTGGGAATGAACTCCGTA
* * * *
499945 TGCCTAAGCCAACCGACGGAACGAGCGGGCGGGGGGGCACTACACCGGCCAGAGAGACGGGATGC
451 TACCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
500010 GCAAGCCATGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTTTTCCATGCCAA
516 GCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAA
* *
500075 TGCCATTTTTATGGCTTGTAAATTCATTCAATGGTCCTATAAGCCTTTATGTGAAGTTTCATGGC
581 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCT-TAAGCCTTCATGTGAAGTTTCATGGC
* * * * *
500140 AAGACGACTCGTTTTCTATTTTTGACGATTTTCGAAACCTTTTATGGTTCGGGATTTTTTTAAAT
645 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAGGA-TTTTTTAAAA
* * *
500205 TTTTTTCAAAAGGAGTTTTGACCCCAAACTTGGTAGATATGATCCTTGTATTTTTGTTGGCATGC
709 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
* * * *
500270 ATAAAAAAATTCAACTAAAAAATCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
774 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
500335 CATTTCAGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTC
839 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * *
500390 TTTAAGGGGGTGAGAGTTCTCAAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
1 TATAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
500455 AGCACCCATCGCACATCATGTGCGCATAGCCCCCTGACCCCACTAATCGCTGGAACCCCAATGTC
66 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCC-CCAATCGCTGGAACCCCAATG-C
* * *
500520 GTCGGTCAA-GTTCTCCGATGATGCTCCGATGATGGTGCCCCGAGTGAAAAGAAAAAGTGC--CA
129 CTCGGT-AAGGTTCTCCGATGATGCTCCGATGATGGTGCCCCGGGCGAAAA-AAAAA-TGCGGCA
* * * *
500582 CCAGCACATGCC-CAGCCCAGCATGTGCACCCGCAACCGTCGGT-CTAGTCTGATCTTACACTGG
191 CCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGA-TCCGATCTTACACTGG
* * * * *
500645 GAATGAACTCCGTATGCTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAACCCATGAAACGAG
255 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAACGAG
500710 CATGCGAGCG
Statistics
Matches: 1878, Mismatches: 198, Indels: 69
0.88 0.09 0.03
Matches are distributed among these distances:
890 7 0.00
891 510 0.27
892 12 0.01
893 6 0.00
894 182 0.10
895 117 0.06
896 243 0.13
897 146 0.08
898 93 0.05
899 531 0.28
900 31 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
TATAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCAATCGCTGGAACCCCAATGCCT
CGGTAAGGTTCTCCGATGATGCTCCGATGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGC
ACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAATGA
ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAACGAGGAGCGG
GCGCTTAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGAGATTGGACGGGTCCCCCCTACGTGCT
GTCGATCATGCTGCCGCAACCCTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACCT
AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTC
AGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
Found at i:499770 original size:26 final size:26
Alignment explanation
Indices: 499741--499793 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
499731 CCGATCCGAT
* *
499741 CTTACACTGGTAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
499767 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
499793 C
1 C
499794 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:500671 original size:26 final size:26
Alignment explanation
Indices: 500635--500687 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
500625 CTAGTCTGAT
*
500635 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
* *
500661 CTTAGACTGGGAATAAACTTCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
500687 C
1 C
500688 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:502284 original size:26 final size:26
Alignment explanation
Indices: 502255--502305 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
502245 CCAATCCGAT
502255 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
502281 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTAGGAATGAACTCCGTAT
502306 ACCAAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:502472 original size:900 final size:897
Alignment explanation
Indices: 500727--506081 Score: 4022
Period size: 908 Copynumber: 5.8 Consensus size: 897
500717 GCGCCCAGTT
* * * *
500727 GGATGCGCAAGCCATTGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACCA
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* *
500792 TGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * *
500857 CATGCCAAGACGACTCATTTTCTGTTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * * * *
500922 TTATAATTTTCTCAGAAGGAGTTCTAGCCCCACACTTGGTAGACGTGATCCTTGTACTTTTTTTG
196 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* ** * *
500987 GCATGCGTAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTAACCATATGAAAAAAG
261 GAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* *
501052 TGTCCCCATTTCAAACACTTTAATGGCTACTGGCA-ACAAACCTGTAAAATCTCAAATGCTCTTT
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGACAAACCTATAAAATCTCAAATGCTCTTT
**
501116 AAGGGGGTGTGAGTTCTCGAGG-TTGATGAGGGATAAGGGGCCAATATAAATGCCAAGTACCAGC
391 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGC
* * * ** *
501180 ACCCATCGCATATCATGTGCACACACCCCCCACCCCCTAATCACCGGAACCCCAATGCCGTCGAT
456 ACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGT
* * * *
501245 CAGGTTCTCTGACGATGCTCCGACGATGGTGCCTCGGGCGAAAAAAAAAT-ACGGCACCAGCACA
521 CAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGA-GGCACCAACACA
* * * **
501309 TGCCCGAGCCCAGCATGTGCACCCACAACCCTTGATCTGAT-CGAATCTTACACTGGGAATGAAC
585 TGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAATCCG-ATCTTACACTGGGAATGAAC
* * * * * *
501373 TCCATATGCTTAGACTGGGAATTAACTTCGTATGCCTATGTCAACCCACGAAACGAGCGTGCAGG
649 TCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
501438 CACTCAGCCGGCCAGAGGGGTAGGATACATAAGCCGAGGATCGATCGGGTCCCCCCCTGCGTGCT
714 CGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGT-CCCCCCTACGTGCT
* * * * * * * *
501503 AGCAATCTTGCTGCCACAACCCTAGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATACC
778 ACCGATCCTGCTGCCACAACCTTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
501568 TAAGCCAACCGATGACATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
843 TAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * *
501623 GGATGCGCTAGCCATGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCCA
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
501688 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * ** *
501753 CATGGCAAGACGACTTGTTTTCTATTTTTTAAAATTTTTGAAACTTTTTACAGTTCGGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * *
501818 TAAAAATTTTTTCAGAAGGACTTTTGGCCCCAAACTTGGAAGATGTGATCCTTGTATTTTTTTTG
196 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* * * *
501883 GAATGCACAAAAAAATTCAGCTAAAAATTCCAAGTGTACAAGATTTTTGTGACCATTTGAAAAAG
261 GAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA-TTTTGTGACCATTTGAAAAAA
*
501948 GTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGA-AAACCTATAAAATCTCAAATGCTCTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGACAAACCTATAAAATCTCAAATGCTCTT
*
502012 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATATGGGCCAAGTACCAG
390 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAG
* * *
502077 CACCCATCGTACATCATGTGCGCACACCCCCCCGCCCCCTCAATCGTCGGAACCCCAATGCCGCC
455 CACCCATCGCACATCATGTGCGCACA-CCCCCCACCCCC-CAATCGTCGGAACCCCAATGCCGTC
*
502142 GATCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGAGGCACCAACA
518 GGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGAGGCACCAACA
* * * *
502207 CATGCCCGAGCCCAGAATGTGCACTCGCAACCCTCGGGCCAATCCGATCTTACACTAGGAATGAA
583 CATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAATCCGATCTTACACTGGGAATGAA
* * * *
502272 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCAAAGTCAACCCACGAAACGAGTGTGCGG
648 CTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * * * *
502337 GCGCTCAGTCGGCCAGAGCGGCAGGACGCGCAAGCCGGGGCTCG-GCTGTGTCCCCCCCAATGTG
713 GCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATC-GGGT-CCCCCCTACGTG
* * * * ** * *
502401 GTACCGATCTTGCTGCCGCAACCTTCGGTCCGATCTGATCTTAGGCTAGGAATGAACTCCGTATG
776 CTACCGATCCTGCTGCCACAACCTTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
** * ** ** * *
502466 CCTAAGCCAACCGACGAAACAAGCGAACGGGCGACCGTTACGTCGGCCAGAGAGGCG
841 CCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* *
502523 GGATGCACAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* * ** * ** * * ** *
502588 AGCCAATGCCATTTTTA--GATTGGGAA-TGA-ACTCTGTATGCC-TAAGCCAAC-TGACGAAAC
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG-GTCCCTTAAGCCTTCATG-TG-AA-
** * * ** * ***** ** * * **
502647 G-AGC-GGGC-AGGCGGGCACTACGTTGGCCAGAGAGGCGGGA--TGTGCAAGCCGTGGATCCAT
127 GTTTCATGGCAAGAC--G-ACT-CGTTTTCTA-TTTTTCACGATTTTTG-AA-AC-T---T-TTT
* * * * * * ** * * *
502707 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
180 ACGGT--T-CG-GGATTT-------TTTTAAAATTT-TTTCA-G--AA-G-GA-GTTT-TGGC-C
** ** * * * **
502772 GTAAA-TTCATACA-ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA-G-ACGAATCATT
225 CCAAACTTGGTAGACGTGAT-CCTT--G---T-AT-T----TTTTTTGG-AATGCAC-AA--A--
*** * * ** * * * ** *
502833 TTCTATTTTTCATGATTTTTAAAACTTTTTACGAT-T-CAGGATTTTTTAAAAAATTTTTCAGAA
272 ----AAAATTCA-G---CTAAAAAC--TCGAAG-TGTACAGGATTTTGT-GACCA--TTTGA-AA
** * *** **
502896 TGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGT-ATTTTTTTTGGCATGCACAAA---A
322 AAAG---TGTCCCC--A-TT--TCAGAC---A--CTT-TAATGGCTACTGGCA-G-ACAAACCTA
* * ** * *** * * *
502956 -AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATT-T-GAGACACTTT-A--ATG
371 TAAAATC-TC-AAATGCTC----TTTA-AGG-GGGTGTGA--GTTCTCGAG---GTTTGATGAGG
* * * * * *** * * ****** * ** * *
503015 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
423 GATA-AGG-GGCCAA--TATAAGGGC-CAAGTAC-C----AGCACCCAT-CGCACATCA----TG
* * * ***** ***** ** * * * * * **
503080 ATGAGGGATA-GGGGGACAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA
473 -TG-CGCACACCCCCCACCCCCCAATCGTC--GGA--A-C-CCCAATGC-CGTC--G-G-TCAGG
** * *** * * ** * ******** * * *
503144 CCCCCCAGCCCCCCCATCGC-CAGAACCCA-AATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG
525 TTCTCC-G----ATGAT-GCTCCG-A-CGATGGTGCC-CCGGGC-GAAAAAAAAATGAGGCACCA
** * ** ** * * ** * * ** *
503207 ACGATGGTGCCTCGGGCGAAAAAAAATATGATACTAGCACATGCCT-GAGCCCAGCATGTGCACC
580 AC-A-CATGCC-CGAGC---CCAGCATGTG-CACCCGCA-A-CCCTCG-GTCCA--ATCCG-A-T
** * * * * * **
503271 CGCAACCCTTGG-TTCG-A-T-C-TAAT-TTTACACCGTGAATAAACTTCGTATGCTTAGACTGG
631 C-TTACACTGGGAAT-GAACTCCGT-ATGCTTAGA-C-TG--GGAA--T-G-A-------AC---
* * ** * * * **
503330 GAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCATTTGAGCGTTTAGCAAGCCAGAGG
675 ---T---C-C-ATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * ** * * * ** * **
503395 GCCAGCACGCACAATCCGGGGATCGATCGATTACCCCCTGCGTACTGTCGATCCTGCTACCGTAA
732 GGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAA
* * * *
503460 CCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATTCCTAAGCCAACCGACAAAATG
797 CCTTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
* * * * *
503525 AGCGGGCGGGTGGGCGAGCACTAAGCCGGCCAAAAAGACG
862 AGCGAGC----GGGCGGGCACTACGCCGGCCAGAGAGACG
* * * * **
503565 GGATGCACAAGCTGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTG
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
503630 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * **
503695 CATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTAGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * *
503760 TTAACATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTTGTT-
196 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* * *
503824 CACATGCACAAAACAATTCCGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
261 GA-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* * *
503889 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGTA-ACAAACCTGTAAAATCTCAAATGCTCTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGACAAACCTATAAAATCTCAAATGCTCTT
*
503953 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
390 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAG
* * *
504018 CACCCATCGTACATCATGTGCGCACACCCCCCACCCCCCAATCGTTGGAACCACAATGCCGTCGG
455 CACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGG
** * * **
504083 TCAGGTTCTCC---GA---T-----GATGGTGCCCCACGC-CAAAAAAAATGTGGCACCAGTACA
520 TCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGAGGCACCAACACA
* * * * *
504136 TGCCCGAACCCAGCATGTGTACTCGCAACCCTCGGTCCAATCTGATCTTACACTGGGAAGGAACT
585 TGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAATCCGATCTTACACTGGGAATGAACT
* * * *
504201 CCATATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGT
650 CCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
** * ** *
504266 GCTCAGTTGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGCCGGGTCCCCCCTACGTGCTGC
715 GCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTACGTGCTAC
* *
504331 CGATCCTGCTGCCACAACCCTT-GGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
780 CGATCCTGCTGCCACAA-CCTTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
504395 AAGCCAACTGACGAAACGAGAGAGTGGGCGGGCACTACACAGGCCAGAGACG-CG
844 AAGCCAACCGACGAAATGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGA-GACG
* * * *
504449 GGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTTTGCCT
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* * *
504514 TACCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGACCCTTAAGCCTTCATGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * * *
504579 CATGGCAGGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGAGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * *
504644 TTAAAATTTTTTCAGGATGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
196 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* * * *
504709 GCATGCACAAAAAAATTCAGCTAAAAACACGAAGTGTACAGAATTTTGTGACCATTAGAAAAAAG
261 GAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
*
504774 TGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAG-CAAACC-AGTAAAATCTCAAATGCTCTT
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGACAAACCTA-TAAAATCTCAAATGCTCTT
* * **
504837 TAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTAATAG
390 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAG
* * **
504902 CACCCATCACATATCATGTGCGCACACCCCCCCACCACCCCAATCGTCGGAACCCCAATATCGTC
455 CACCCATCGCACATCATGTGCGCACA-CCCCCCACC-CCCCAATCGTCGGAACCCCAATGCCGTC
* * * * * *
504967 GGTCACGTTCTCCGACGATGCTCCGACGACGCT-CCGACGATGGTGCCTTTGGCCAAAAAAAATG
518 GGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCC--C--CGG-G-C----G-AAAAAAAAATG
* * ** * **
505031 TGGCACGAGA-ACATGGTCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTAC
572 AGGCACCA-ACACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAATCCGATCTTAC
* *** * *
505095 ACTGGGAATGAACTCCGTATGGTTAGACTAAAAATGAACTCTATATGCCTAAGTCAACCCACAAA
636 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
* *
505160 ACGAGCGTGCGGGCTCTCAACCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCC
701 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCC
* ** * * *
505225 CCCCTACGTACTGTCGATCCTGCTGCCACAACCCTTC-GTTCGGTCTAATCTTAGACTGGGAACG
766 CCCCTACGTGCTACCGATCCTGCTGCCACAA-CCTTCGGTCCGGTCCAATCTTAGACTGGGAATG
* * * * **
505289 AACTCCGTATGCCCAAGCCAACCTATGAAACT-AGCGAGCGGGCGGGCACTACGTCGGCTTGAGA
830 AACTCCGTATGCCTAAGCCAACCGACGAAA-TGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGA
*
505353 GGCG
894 GACG
505357 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
505422 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCATGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
505487 CATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTAGAAACTTTTTACTGTTCGGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* *
505552 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTG
196 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* * *
505617 GCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACGGGATTTTGTGACCATTTGAAAAAAG
261 GAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
505682 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG-CAAACCTATAAAATCTCAAATGCTCTTT
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGACAAACCTATAAAATCTCAAATGCTCTTT
*
505746 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
391 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * *
505811 ACCCATTGCACATCATATGCGCA-A---TCC-CCCCCCAATCGTCGAAACCCCAATGCCATCGGT
456 ACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGT
* * * * * *
505871 GAAGTTCTCCCATGTTGCTCC-AGCAATGGTGCCCCGGGCG-AAAAAAAAT-ACGGCACCAGCAC
521 CAGGTTCTCCGATGATGCTCCGA-CGATGGTGCCCCGGGCGAAAAAAAAATGA-GGCACCAACAC
* **
505933 ATGCCCGAGCCCTGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAAC
584 ATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAATCCGATCTTACACTGGGAATGAAC
* * * * * *
505998 TTCGTATGCTTAGACTGGGAATGAGCTCCGTATGCC-AAGTCAACCCACGAAACCAGTGTACGGG
649 TCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
*
506062 CGCTCAGCCAGCCAGAGGGG
714 CGCTCAGCCGGCCAGAGGGG
506082 TAAGAAGTGC
Statistics
Matches: 3439, Mismatches: 749, Indels: 549
0.73 0.16 0.12
Matches are distributed among these distances:
884 455 0.13
885 10 0.00
886 36 0.01
888 148 0.04
889 46 0.01
890 107 0.03
892 2 0.00
893 1 0.00
895 5 0.00
896 290 0.08
897 113 0.03
898 78 0.02
899 21 0.01
900 415 0.12
901 52 0.02
902 5 0.00
903 2 0.00
904 1 0.00
905 4 0.00
906 1 0.00
907 4 0.00
908 731 0.21
909 6 0.00
910 9 0.00
911 2 0.00
912 4 0.00
913 8 0.00
914 5 0.00
915 7 0.00
916 9 0.00
917 10 0.00
918 6 0.00
920 2 0.00
921 4 0.00
922 5 0.00
923 7 0.00
924 19 0.01
925 3 0.00
926 5 0.00
927 4 0.00
929 1 0.00
930 2 0.00
931 1 0.00
934 2 0.00
935 9 0.00
936 3 0.00
937 1 0.00
943 5 0.00
944 6 0.00
945 1 0.00
946 1 0.00
947 10 0.00
948 9 0.00
949 10 0.00
950 6 0.00
951 4 0.00
953 2 0.00
954 9 0.00
955 7 0.00
956 3 0.00
957 2 0.00
958 4 0.00
959 1 0.00
960 5 0.00
961 4 0.00
962 5 0.00
963 12 0.00
964 8 0.00
965 2 0.00
966 8 0.00
967 5 0.00
968 6 0.00
969 10 0.00
970 16 0.00
971 16 0.00
972 10 0.00
973 6 0.00
974 4 0.00
975 10 0.00
976 1 0.00
977 7 0.00
978 11 0.00
979 5 0.00
980 4 0.00
981 5 0.00
982 1 0.00
983 4 0.00
984 6 0.00
985 4 0.00
986 4 0.00
987 9 0.00
988 1 0.00
989 1 0.00
990 11 0.00
991 6 0.00
992 1 0.00
993 7 0.00
994 10 0.00
995 11 0.00
996 1 0.00
998 1 0.00
999 4 0.00
1000 4 0.00
1001 7 0.00
1002 7 0.00
1003 11 0.00
1004 1 0.00
1005 6 0.00
1006 5 0.00
1007 7 0.00
1008 2 0.00
1009 6 0.00
1010 6 0.00
1011 3 0.00
1012 9 0.00
1013 6 0.00
1014 7 0.00
1015 4 0.00
1016 4 0.00
1017 12 0.00
1018 12 0.00
1019 7 0.00
1020 2 0.00
1021 2 0.00
1022 2 0.00
1024 19 0.01
1025 17 0.00
1026 20 0.01
1027 13 0.00
1028 10 0.00
1029 1 0.00
1030 132 0.04
1031 31 0.01
1032 32 0.01
1033 127 0.04
1034 46 0.01
1035 25 0.01
1036 7 0.00
1037 24 0.01
1038 109 0.03
1039 80 0.02
1040 23 0.01
1041 48 0.01
1042 129 0.04
1043 9 0.00
1044 14 0.00
1045 13 0.00
1046 20 0.01
1047 6 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (897 bp):
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
GAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGACAAACCTATAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGT
CAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGAGGCACCAACACAT
GCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAATCCGATCTTACACTGGGAATGAACTC
CGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
CTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTACGTGCTACC
GATCCTGCTGCCACAACCTTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAATGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACG
Found at i:502628 original size:161 final size:161
Alignment explanation
Indices: 502449--502765 Score: 490
Period size: 161 Copynumber: 2.0 Consensus size: 161
502439 TCTTAGGCTA
* **
502449 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGAACGGGCGACCGTTACGTCGGCC
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGAACAGGCGACCACTACGTCGGCC
*
502514 AGAGAGGCGGGATGCACAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
66 AGAGAGGCGGGATGCACAAGCCGTCGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
502579 TTTCTGCCAAGCCAATGCCATTTTTAGATTG
131 TTTCTGCCAAGCCAATGCCATTTTTAGATTG
* * * ** ** *
502610 GGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGGCAGGCGGGCACTACGTTGGCC
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGAACAGGCGACCACTACGTCGGCC
** *
502675 AGAGAGGCGGGATGTGCAAGCCGTGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
66 AGAGAGGCGGGATGCACAAGCCGTCGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
502740 TTTCTGCCATGCCAATGCCATTTTTA
131 TTTCTGCCAAGCCAATGCCATTTTTA
502766 TGGCTTGTAA
Statistics
Matches: 140, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
161 140 1.00
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (161 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGAACAGGCGACCACTACGTCGGCC
AGAGAGGCGGGATGCACAAGCCGTCGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGCCAAGCCAATGCCATTTTTAGATTG
Found at i:504211 original size:26 final size:26
Alignment explanation
Indices: 504182--504234 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
504172 CCAATCTGAT
504182 CTTACACTGGGAAGGAACTCCATATG
1 CTTACACTGGGAAGGAACTCCATATG
* * *
504208 CTTAGACTGGGAATGAACTCTATATG
1 CTTACACTGGGAAGGAACTCCATATG
504234 C
1 C
504235 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAAGGAACTCCATATG
Found at i:504647 original size:884 final size:886
Alignment explanation
Indices: 502602--506081 Score: 4419
Period size: 908 Copynumber: 3.9 Consensus size: 886
502592 AATGCCATTT
* * * *
502602 TTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGGCAGGCGGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGAGCGGGCGGGCACTA
** *
502667 CGTTGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCC-ATAGGGTGGTAGGTGGGTTTAGGCAC
66 C-ACGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA-CCGATAGGGTGGTAGGTGGGTTTAGGCAC
502731 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
129 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
502796 AGCCTTCATGTGAAGTTTCATGGCAAGACGAATCATTTTCTATTTTTCATGATTTTTAAAACTTT
194 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTT
* * * * *
502861 TTAC-GATTCAGGATTTTTTAAAAAATTTTTCAGAATGAGTTTTGGCCCCAAACTTGGTAGACGT
259 TTACGGTTTGAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
502925 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
324 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
502990 TGTGACCA-TT--------TG----------AGACACTTTAATGGCTACTGGCAGCAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
503036 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGACAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
503101 TAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCAGCCCCCCCATCGCCA
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCA-CCCCCCAATCGTCG
* * * * ** *
503166 GAACCCAAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCTCGGGCGAAAAAA
583 GAACCCCAATGCCGTCGGTCAGGTTCTCC-CTGA---T----CGATGGTGCCCCACGCCAAAAAA
** * * * * ** *
503231 AATATGATACTAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTTGGTTCGATCTAATTT
640 AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCT
* * * *
503296 TACACCGTGAATAAACTTCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCAC
705 TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCAC
* * * * * * * *
503361 AAAACGAGCATTTGAGCGT-TTAGCAAGCCAGAGGGCCAGCACGCACAA-TCCGGGGATCGATCG
770 AAAACGAG--TGTGCGGGTCTCAGCAGGCCAGAGGGGCAGGATGCACAAGT-CGGGGATCGATCG
** * * * ** * *
503424 ATTACCCCCTGCGTACTGTCGATCCTGCTACCGTAACCCTCGGTCCGGTCCAATC
832 GGTCCCCCCTACGTACTGTCGATCCTGCTGCCACAACCCTTGGTTCGGTCCAATC
* * * * * * *
503479 TTAGACTAGGAATGAACTCCGTATTCCTAAGCCAACCGACAAAATGAGCGGGCGGGTGGGCGAGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGAGCGGGCGGGC-A-C
* * * * * * *
503544 -ACTAAGCCGGCCAAAAAGACGGGATGCACAAGCTGCGGATCGATAGGGTGGTAGGTGGGTTTAG
64 TAC--A--CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAG
* **
503608 GCACATCTTCATATTTCTACTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
125 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
503673 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAA
190 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAA
*
503738 CTTTTTACGGTTT-AGGATTTTTTTAACATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
255 CTTTTTACGGTTTGAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* ** * *
503802 ACGTGATCTTTGTATTTTTGTTCACATGCACAAAACAATTCCGCTAAAAACTCGAAGTGTACAGG
320 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* * *
503867 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAACAAACC
385 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
503932 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
450 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
503997 AATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCACCCCCCAATCG
515 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCG
* * *
504062 TTGGAACCACAATGCCGTCGGTCAGGTTCT-CC-GAT-GATGGTGCCCCACGCCAAAAAAAATGT
580 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCCTGATCGATGGTGCCCCACGCCAAAAAAAATAT
* * * * * *
504124 GGCACCAGTACATGCCCGAACCCAGCATGTGTACTCGCAACCCTCGGTCCAATCTGATCTTACAC
645 GGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACAC
* * *
504189 TGGGAAGGAACTCCATATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAAC
710 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAAC
** **
504254 GAGTGTGCGGGTGCTCAGTTGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGCCGGGTCCCC
775 GAGTGTGCGGGT-CTCAGCAGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGATCGGGTCCCC
* * *
504319 CCTACGTGCTGCCGATCCTGCTGCCACAACCCTTGGTTCGGTCCGATC
839 CCTACGTACTGTCGATCCTGCTGCCACAACCCTTGGTTCGGTCCAATC
* *
504367 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGAGAGTGGGCGGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGAGCGGGCGGGCACTA
* *
504432 CACAGGCCAGAGACGCGGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGCATA
66 CAC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * * *
504497 TCTTCATATTTTTGCCTTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGACCCTTAA
130 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
504562 GCCTTCATGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTT
195 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTT
* * *
504627 TACGGTTTGA-GATTTTTTTAAAATTTTTTCAGGATGAGTTTTGGCCCAAAACTTGGTAGACGTG
260 TACGGTTTGAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
504691 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACACGAAGTGTACAGAATTTT
325 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* * *
504756 GTGACCATTAGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCAGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
504821 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
** * *
504886 AAGGGCCAAGTAATAGCACCCATCACATATCATGTGCGCACACCCCCCCACCACCCCAATCGTCG
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCACC-CCCCAATCGTCG
** * **
504951 GAACCCCAATATCGTCGGTCACGTTCTCCGACGATGCTCCGACGACGCTCCGACGATGGTGCCTT
583 GAACCCCAATGCCGTCGGTCAGGTTCT-C--C----CT-----GA---T----CGATGGTGCCCC
** * * * ** *
505016 TGGCCAAAAAAAATGTGGCACGAGAACATGGTCGAGCCCAGCATGTGCACCCACAACCCTCGGTC
629 ACGCCAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTC
* * ***
505081 CGGTCCGATCTTACACTGGGAATGAACTCCGTATGGTTAGACTAAAAATGAACTCTATATGCCTA
694 CGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTA
* * * *
505146 AGTCAACCCACAAAACGAGCGTGCGGGCTCTCAACCGGCCAGAGGGGCAGGATGCACAAGCCGGG
759 AGTCAACCCACAAAACGAGTGTGCGGG-TCTCAGCAGGCCAGAGGGGCAGGATGCACAAGTCGGG
* *
505211 GATCGATCGGGTCCCCCCTACGTACTGTCGATCCTGCTGCCACAACCCTTCGTTCGGTCTAATC
823 GATCGATCGGGTCCCCCCTACGTACTGTCGATCCTGCTGCCACAACCCTTGGTTCGGTCCAATC
* * * *
505275 TTAGACTGGGAACGAACTCCGTATGCCCAAGCCAACCT-ATGAAACTAGCGAGCGGGCGGGCACT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CTGACGAAACGAGCGAGCGGGCGGGCACT
* ** *
505339 ACGTCGGCTTGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
65 AC-ACGGCCAGAGAGGCGGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
505404 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACACTGGTCCCTTA
129 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
505469 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-AATTTTAGAAACTT
194 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTA-AAACTT
* *
505533 TTTACTGTTCG-GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
258 TTTACGGTTTGAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
505597 TGATCATTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACGGGATT
323 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
*
505662 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
388 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
505727 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
453 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
505792 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATATGCGCA-A---TCC-CCCCCCAATCGTCG
518 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGTCG
* * * * * ** *
505852 AAACCCCAATGCCATCGGTGAAGTTCTCCCATGTTGCTCCAGCAATGGTGCCCCGGGCGAAAAAA
583 GAACCCCAATGCCGTCGGTCAGGTTCTCCC----TGAT-C-G--ATGGTGCCCCACGCCAAAAAA
* * *
505917 AATACGGCACCAGCACATGCCCGAGCCCTGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCT
640 AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCT
* * **
505982 TACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAGCTCCGTATGCC-AAGTCAACCCAC
705 TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCAC
* * * *
506046 GAAACCAGTGTACGGGCGCTCAGCCA-GCCAGAGGGG
770 AAAACGAGTGTGCGGG-TCTCAG-CAGGCCAGAGGGG
506082 TAAGAAGTGC
Statistics
Matches: 2261, Mismatches: 273, Indels: 126
0.85 0.10 0.05
Matches are distributed among these distances:
877 52 0.02
878 3 0.00
879 1 0.00
880 1 0.00
881 295 0.13
882 5 0.00
883 1 0.00
884 445 0.20
885 11 0.00
886 41 0.02
887 4 0.00
888 264 0.12
889 40 0.02
890 123 0.05
893 2 0.00
894 2 0.00
896 2 0.00
898 3 0.00
899 34 0.02
900 146 0.06
901 33 0.01
902 2 0.00
903 3 0.00
907 7 0.00
908 737 0.33
909 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGAGCGGGCGGGCACTA
CACGGCCAGAGAGGCGGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTT
ACGGTTTGAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAA
CCCCAATGCCGTCGGTCAGGTTCTCCCTGATCGATGGTGCCCCACGCCAAAAAAAATATGGCACC
AGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGTGT
GCGGGTCTCAGCAGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGATCGGGTCCCCCCTACGT
ACTGTCGATCCTGCTGCCACAACCCTTGGTTCGGTCCAATC
Found at i:504992 original size:11 final size:11
Alignment explanation
Indices: 504976--505008 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
504966 CGGTCACGTT
504976 CTCCGACGATG
1 CTCCGACGATG
*
504987 CTCCGACGACG
1 CTCCGACGATG
504998 CTCCGACGATG
1 CTCCGACGATG
505009 GTGCCTTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.39, G:0.27, T:0.15
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:506016 original size:26 final size:26
Alignment explanation
Indices: 505980--506032 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
505970 CCGGTCCGAT
*
505980 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
506006 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
506032 C
1 C
506033 CAAGTCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:514139 original size:25 final size:26
Alignment explanation
Indices: 514088--514139 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
514078 GCGGTCTGAT
*
514088 CTTACACTGGGAGTGAACTTCGGATG
1 CTTACACTGGGAGTGAACTCCGGATG
* *
514114 CTTAGACTGGGA-TGAACTCCGTATG
1 CTTACACTGGGAGTGAACTCCGGATG
514139 C
1 C
514140 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAGTGAACTCCGGATG
Done.