Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 31 of 93
Found at i:3435471 original size:72 final size:72
Alignment explanation
Indices: 3435296--3435491 Score: 195
Period size: 72 Copynumber: 2.7 Consensus size: 72
3435286 TCGTTTTTAA
* * * *
3435296 TTTCTGACTCGTGATTTAATCCC-GATCA-TTTTCATTTTTAGACTCGTGGTTTAATTCCCATCT
1 TTTCTGACTCATGATTTAA-CCCTAATCATTTTTCATTTTTTGACTCATGGTTTAATTCCCATCT
* *
3435359 TTTTTCAT
65 GTCTTCAT
* ** **
3435367 TTTTTGACTCATGATTTAATTCTGGTCATTTTT-ATTTTCTCTGACTCATGGTTTAA-TCTCCAT
1 TTTCTGACTCATGATTTAACCCTAATCATTTTTCATTTT-T-TGACTCATGGTTTAATTC-CCAT
3435430 -TGTCTTCAT
63 CTGTCTTCAT
* * *
3435439 TTTCTGACTCATGGTTTAACCCTAATCGTTTTTCATTTTTTGACTGATGGTTT
1 TTTCTGACTCATGATTTAACCCTAATCATTTTTCATTTTTTGACTCATGGTTT
3435492 CATTTGATCA
Statistics
Matches: 102, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
70 1 0.01
71 38 0.37
72 41 0.40
73 22 0.22
ACGTcount: A:0.18, C:0.19, G:0.12, T:0.51
Consensus pattern (72 bp):
TTTCTGACTCATGATTTAACCCTAATCATTTTTCATTTTTTGACTCATGGTTTAATTCCCATCTG
TCTTCAT
Found at i:3436064 original size:34 final size:34
Alignment explanation
Indices: 3435964--3436065 Score: 98
Period size: 34 Copynumber: 3.0 Consensus size: 34
3435954 GATCACTTTT
* *
3435964 ATTTTCTAACTCGAGGTTTAA-TCCTAGTGGTTTTC
1 ATTTTCTAACTTGAGGTTTAATTCC-AGTCG-TTTC
* * * * *
3435999 ATTTTCTCACTTGGGGTTTAGTCCCAATCGTTTC
1 ATTTTCTAACTTGAGGTTTAATTCCAGTCGTTTC
* *
3436033 ATTTTCTAACTTGTGCTTTAATTCCAGTCGTTT
1 ATTTTCTAACTTGAGGTTTAATTCCAGTCGTTT
3436066 TCGTTTTTTA
Statistics
Matches: 53, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
34 31 0.58
35 20 0.38
36 2 0.04
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.47
Consensus pattern (34 bp):
ATTTTCTAACTTGAGGTTTAATTCCAGTCGTTTC
Found at i:3436981 original size:72 final size:71
Alignment explanation
Indices: 3436809--3436991 Score: 253
Period size: 71 Copynumber: 2.6 Consensus size: 71
3436799 ATTTTTTTAA
* * *
3436809 TTGTGGTTTAATTCCCATCCTT-TTGTTTTTTTGACTCGTGATTTAATTCTGGTAATTTTTATTT
1 TTGTGGTTTAATCCCCAT-CTTCTTCTTTTTTTGACTCATGATTTAATTCTGGTAATTTTTATTT
3436873 CTCTAGC
65 CTCTAGC
* * *
3436880 TTGTGGTTTAATTCCCATCTTTTTCTTTTTTTGACTCATGATTTAATTCTGGTACTTTTTATTTC
1 TTGTGGTTTAATCCCCATCTTCTTCTTTTTTTGACTCATGATTTAATTCTGGTAATTTTTATTTC
*
3436945 TCTGGC
66 TCTAGC
*
3436951 TTGTGGTTTAATCCCCAT-TATCTTCATTTTTCTGACTCATG
1 TTGTGGTTTAATCCCCATCT-TCTTC-TTTTTTTGACTCATG
3436992 GCTTAATCCC
Statistics
Matches: 102, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
70 4 0.04
71 84 0.82
72 14 0.14
ACGTcount: A:0.15, C:0.17, G:0.13, T:0.54
Consensus pattern (71 bp):
TTGTGGTTTAATCCCCATCTTCTTCTTTTTTTGACTCATGATTTAATTCTGGTAATTTTTATTTC
TCTAGC
Found at i:3437535 original size:138 final size:139
Alignment explanation
Indices: 3437320--3437576 Score: 333
Period size: 138 Copynumber: 1.8 Consensus size: 139
3437310 TTTAATTTTG
* * * *
3437320 GTCATTTTCATTTTTTGACTCGTGGTTTAATCTTGGTCATTTTCACTTTTTGACTTATGGTTTAA
1 GTCATTTTCATTTTTTGACTCGTGATTTAATCTTGATCATTTTCAC-TTTTGACTCATGGTATAA
* *
3437385 TCCCTGTTGTTTTACATTTTCTAACTCGT-GTTTAATCCCTATCATTTTCATTTTCAAACGCATT
65 TCCCTGTTGTTTTACA-TTTCTAACTCATCGTTTAATCCCGATCATTTTCATTTTCAAACGCATT
3437449 GTTTAATCCCT
129 GTTTAATCCCT
* * * *
3437460 GTCATTTTTATTTTTTGACTTGTGATTTAAT-TTCGATCGTTTTCA-TTTTGACTCGTGGTATAA
1 GTCATTTTCATTTTTTGACTCGTGATTTAATCTT-GATCATTTTCACTTTTGACTCATGGTATAA
* * *
3437523 T-CCTGGTTGTTTTTCATTTCTGACTCATCGTTTAATCCCGATCGTTTTCATTTT
65 TCCCT-GTTGTTTTACATTTCTAACTCATCGTTTAATCCCGATCATTTTCATTTT
3437577 TTGACTCATG
Statistics
Matches: 101, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
137 13 0.13
138 49 0.49
139 2 0.02
140 37 0.37
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.52
Consensus pattern (139 bp):
GTCATTTTCATTTTTTGACTCGTGATTTAATCTTGATCATTTTCACTTTTGACTCATGGTATAAT
CCCTGTTGTTTTACATTTCTAACTCATCGTTTAATCCCGATCATTTTCATTTTCAAACGCATTGT
TTAATCCCT
Found at i:3437648 original size:243 final size:242
Alignment explanation
Indices: 3437033--3437748 Score: 641
Period size: 246 Copynumber: 2.9 Consensus size: 242
3437023 TAGTGGTTTC
* * ** * *
3437033 ATCTCGGTCATTTTCATTTTCTAACTCAT-GCTTTAATCCCTG-TTGTTTTAATTTTTTGATTCA
1 ATCTCGATCATTTTCATTTTCTGACTCATCG-TTTAATCCC-GATCATTTTCATTTTTTGACTCA
* * * * * * * **
3437096 TGGTTTAATTCC-GATCGTTTTCAATTTTAGACTCATGATTTAATTTC-GATCATTTTT-ATTTT
64 TGGTTTAA-TCCTGGTCATTTTCACTTTTTGACTTAAGGTTTAATCCCAG-TCATTTTTCATTTT
* * * * * *
3437158 TTGACTCGTGATTTAATTCCTATCATTTTCATTTTTTGAC-CAGTGGTTTAATCCCAGTCATTCT
127 CTAACTCGTGATTTAA-TCCTATCATTTTCA-TTTTTAACGCA-TTGTTTAATCCCTGTCATTTT
* * * * *
3437222 CATTTTTTGACTTATGATTTGATTTCAATCGTTTTTATTTGTTTGACTCATGATTTA
189 CATTTTTTGACTTGTGATTTAATTTCGATCGTTTTCA--T-TTTGACTCATGATATA
* * *** * *
3437279 ATGTCGATCATTTTCATTTTTTGACTCATCGTTTAATTTTGGTCATTTTCATTTTTTGACTCGTG
1 ATCTCGATCATTTTCATTTTCTGACTCATCGTTTAATCCCGATCATTTTCATTTTTTGACTCATG
* * * ** *
3437344 GTTTAATCTTGGTCATTTTCACTTTTTGACTTATGGTTTAATCCCTGTTGTTTTACATTTTCTAA
66 GTTTAATCCTGGTCATTTTCACTTTTTGACTTAAGGTTTAATCCCAGTCATTTTTCATTTTCTAA
* *
3437409 CTCGTG-TTTAATCCCTATCATTTTCATTTTCAAACGCATTGTTTAATCCCTGTCATTTTTATTT
131 CTCGTGATTTAAT-CCTATCATTTTCATTTT-TAACGCATTGTTTAATCCCTGTCATTTTCATTT
* *
3437473 TTTGACTTGTGATTTAATTTCGATCGTTTTCATTTTGACTCGTGGTATA
194 TTTGACTTGTGATTTAATTTCGATCGTTTTCATTTTGACTCATGATATA
* * ** *
3437522 ATCCTGGTTGTTTTTCA-TTTCTGACTCATCGTTTAATCCCGATCGTTTTCATTTTTTGACTCAT
1 AT-CTCGATCATTTTCATTTTCTGACTCATCGTTTAATCCCGATCATTTTCATTTTTTGACTCAT
** *
3437586 GGTTTAATCCTGGTGGTTTTCA-TTTTCTCG-CTTAAGGTTTAGTCCCAGTCATTTTTCATTTTC
65 GGTTTAATCCTGGTCATTTTCACTTTT-T-GACTTAAGGTTTAATCCCAGTCATTTTTCATTTTC
* * * *
3437649 TAACTCATGCTTTAATTCTAGTCATTTTCATTTTTAACTTGC-CT-TTTAAT-CCTGATCATTTT
128 TAACTCGTGATTTAATCCTA-TCATTTTCATTTTTAAC--GCATTGTTTAATCCCTG-TCATTTT
* **
3437711 CATTTTTTGACTCGT-ATTTAATTTCGATAATTTTCATT
189 CATTTTTTGACTTGTGATTTAATTTCGATCGTTTTCATT
3437749 ATCATTTTCA
Statistics
Matches: 386, Mismatches: 68, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
242 29 0.08
243 142 0.37
244 31 0.08
245 10 0.03
246 157 0.41
247 17 0.04
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (242 bp):
ATCTCGATCATTTTCATTTTCTGACTCATCGTTTAATCCCGATCATTTTCATTTTTTGACTCATG
GTTTAATCCTGGTCATTTTCACTTTTTGACTTAAGGTTTAATCCCAGTCATTTTTCATTTTCTAA
CTCGTGATTTAATCCTATCATTTTCATTTTTAACGCATTGTTTAATCCCTGTCATTTTCATTTTT
TGACTTGTGATTTAATTTCGATCGTTTTCATTTTGACTCATGATATA
Found at i:3437697 original size:34 final size:33
Alignment explanation
Indices: 3437623--3437717 Score: 95
Period size: 34 Copynumber: 2.8 Consensus size: 33
3437613 TCGCTTAAGG
* *
3437623 TTTAGTCCCAGTCATTTTTCATTTTCTAACTCATGC
1 TTTAATCCTAGTCA-TTTTCATTTT-TAACT-ATGC
*
3437659 TTTAATTCTAGTCATTTTCATTTTTAACT-TGCC
1 TTTAATCCTAGTCATTTTCATTTTTAACTATG-C
3437692 TTTTAATCCT-GATCATTTTCATTTTT
1 -TTTAATCCTAG-TCATTTTCATTTTT
3437718 TGACTCGTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
32 2 0.04
33 2 0.04
34 27 0.52
35 10 0.19
36 11 0.21
ACGTcount: A:0.20, C:0.20, G:0.06, T:0.54
Consensus pattern (33 bp):
TTTAATCCTAGTCATTTTCATTTTTAACTATGC
Found at i:3437793 original size:81 final size:81
Alignment explanation
Indices: 3437670--3437826 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
3437660 TTAATTCTAG
*
3437670 TCATTTTCATTTTTAACTTGCCTTTTAATCCTGATCATTTTCATTTTTTGACTCGT-ATTTAATT
1 TCATTTTCATTTTTAACTTGCCTTTTAATCCTGATCATTTTCATTTTTTGACTCGTGATTGAATT
3437734 TCGATAATTTTCATTA
66 TCGATAATTTTCATTA
* *
3437750 TCATTTTCATTTCTTAACTCGTG-GTTTT-AT-CTCGATCGTTTTCATTTTTTGACTCGTGATTG
1 TCATTTTCATTT-TTAACT--TGCCTTTTAATCCT-GATCATTTTCATTTTTTGACTCGTGATTG
* *
3437812 AATTTTGATTATTTT
62 AATTTCGATAATTTT
3437827 TATTTCTCTT
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
80 14 0.21
81 31 0.46
82 20 0.30
83 2 0.03
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.55
Consensus pattern (81 bp):
TCATTTTCATTTTTAACTTGCCTTTTAATCCTGATCATTTTCATTTTTTGACTCGTGATTGAATT
TCGATAATTTTCATTA
Found at i:3438388 original size:246 final size:246
Alignment explanation
Indices: 3437823--3438410 Score: 530
Period size: 246 Copynumber: 2.4 Consensus size: 246
3437813 ATTTTGATTA
* * * * *
3437823 TTTTT-ATTTCTCTTACTTGTGATTTAATGT-CGATCATTTTCATTTTCTAACTCATGATTTTAT
1 TTTTTCATTT-TCTGACTTGTGCTTTAAT-TCCCATCATTTTCATTTTCTGACTCATGATTTAAT
* * * * * * * * *** ** * *
3437886 CTCGATCGTTTTCATTT-TCTAACCCACGATTTAATCCTAATCATTTTTATTTTTTGACCCATGG
64 TTCGATCATTTTTATTTCTGTGACTCATGATTTAAGCCCCGTTGTCTTCATTTTTTGACCCATGG
* * * * **
3437950 TTCAATCCTGGTCATTTTCATTTTCTGACTCGTGATTTAATCTGGGTCATTTTTATTTTCTTACT
129 TTCAATCCTGGTCATTTTAATTTTCTGACTCGTGATTTAATCTCGATCATTTTAATTTTCAGACT
* * *
3438015 AGTTGTTTAATCTTGGTCGTTTTTGTTATTTGACTCATGATTTAATCTTGATC
194 AGTTGTTTAATCTTGGTCATTTTTATTATTTGACTCATGATTTAATCTTAATC
* *
3438068 TTTTTCATTTTCTGACTTGTGCTTTAATTCCCATCCTTTTCATTTTCTGACTTATGATTTAATTT
1 TTTTTCATTTTCTGACTTGTGCTTTAATTCCCATCATTTTCATTTTCTGACTCATGATTTAATTT
* * * * * *
3438133 TGGTCATTTTTATTTCTGTGAGTCATGGTTTAAGCCCCGTTGTCTTCATTTTTTGACTCGTGGTT
66 CGATCATTTTTATTTCTGTGACTCATGATTTAAGCCCCGTTGTCTTCATTTTTTGACCCATGGTT
* * * *
3438198 TAATCCCT-GTCATTTTAATTTTTTGACTCGTGGTTTAATCTCGATCGTTTTCAATTTT-AGACT
131 CAAT-CCTGGTCATTTTAATTTTCTGACTCGTGATTTAATCTCGATCATTTT-AATTTTCAGACT
* * *
3438261 CG-TGATTTAATTTTGGTCATTTTTATT-TTCTGACTCATTATTTAAT-TCTAAT-
194 AGTTG-TTTAATCTTGGTCATTTTTATTATT-TGACTCATGATTTAATCT-TAATC
** * * * * * * *
3438313 TATTTTTGTTTTTTGGCTTGTGGTTTAA-TCCCGGTCATTTTTATTTTCTGACTCGTGATTTGAT
1 T-TTTTCATTTTCTGACTTGTGCTTTAATTCCC-ATCATTTTCATTTTCTGACTCATGATTTAAT
* *
3438377 TTCGATCATTTTTTTTTCTTTGACTCATGATTTA
64 TTCGATCATTTTTATTTCTGTGACTCATGATTTA
3438411 GTGTAGGTCA
Statistics
Matches: 272, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
244 1 0.00
245 71 0.26
246 192 0.71
247 8 0.03
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (246 bp):
TTTTTCATTTTCTGACTTGTGCTTTAATTCCCATCATTTTCATTTTCTGACTCATGATTTAATTT
CGATCATTTTTATTTCTGTGACTCATGATTTAAGCCCCGTTGTCTTCATTTTTTGACCCATGGTT
CAATCCTGGTCATTTTAATTTTCTGACTCGTGATTTAATCTCGATCATTTTAATTTTCAGACTAG
TTGTTTAATCTTGGTCATTTTTATTATTTGACTCATGATTTAATCTTAATC
Found at i:3439264 original size:211 final size:210
Alignment explanation
Indices: 3439027--3439478 Score: 475
Period size: 211 Copynumber: 2.1 Consensus size: 210
3439017 TTTAATCCTG
* * * * *
3439027 GTCAGTTTCATTTTTTGACCCATGGTTTAATCCCAGTCATTTTTATTTTTTGACTCATGATCTAA
1 GTCATTTTGATTTTCTGACTCATGGTTTAATCCCAGTCATCTTTATTTTTTGACTCATGATCTAA
* * * * * * *
3439092 T-CTAGGTTG-TTTTTATTTTTTGACTCA-TGGTTTAATCCTGGTCATTTTTATTTTTTAGCTCG
66 TCCCA-ATTGCTTTTCATTTTCTGACT-AGTGGTTTAATCCTGGTCATTTTCATTTCTGA-CTCG
** * * *
3439154 TGATTTAAT-CTTGGTTGTTTTCATTTTCTGAA-TCATGGTTTAATTCC-CATCCTTTTCATTTT
128 TGATTTAATCCTT-GTCATTTTAATTTTCT-AACTCATGGTTTAA-TCCTCATCATTTTCAGTTT
*
3439216 TTGACTTGTGATCTAATTCTA
190 TAGACTTGTGATCTAATTCTA
* * ** * *
3439237 GTCATTTTTATTTCTCTGACTCATGGTTTAATCCCCGTTGTCTTTATTTTTTGACTCATGGTTTA
1 GTCATTTTGATTT-TCTGACTCATGGTTTAATCCCAGTCATCTTTATTTTTTGACTCATGATCTA
* * *
3439302 ATCCCAATTGCTTTTCATTTTCTGACTAGTGGTTTCATCTTTGTCATTTTCATTTCTGACTCGTG
65 ATCCCAATTGCTTTTCATTTTCTGACTAGTGGTTTAATCCTGGTCATTTTCATTTCTGACTCGTG
* ** *
3439367 GTTTAATCCTTGTCATTTTAATTTTCTAACTCATGGTTTAATCCTGGTCATTTTTAGTTTTAGAC
130 ATTTAATCCTTGTCATTTTAATTTTCTAACTCATGGTTTAATCCTCATCATTTTCAGTTTTAGAC
* * *
3439432 TTGTGATTTAATTTTG
195 TTGTGATCTAATTCTA
* *
3439448 GTCATTTTGATTTTTTGACTCATGATTTAAT
1 GTCATTTTGATTTTCTGACTCATGGTTTAAT
3439479 TCTAATCGTT
Statistics
Matches: 199, Mismatches: 36, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
210 32 0.16
211 124 0.62
212 43 0.22
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.52
Consensus pattern (210 bp):
GTCATTTTGATTTTCTGACTCATGGTTTAATCCCAGTCATCTTTATTTTTTGACTCATGATCTAA
TCCCAATTGCTTTTCATTTTCTGACTAGTGGTTTAATCCTGGTCATTTTCATTTCTGACTCGTGA
TTTAATCCTTGTCATTTTAATTTTCTAACTCATGGTTTAATCCTCATCATTTTCAGTTTTAGACT
TGTGATCTAATTCTA
Found at i:3439393 original size:69 final size:69
Alignment explanation
Indices: 3439288--3439420 Score: 155
Period size: 69 Copynumber: 1.9 Consensus size: 69
3439278 CTTTATTTTT
* * * * *
3439288 TGACTCATGGTTTAATCCCAATTGCTTTTCATTTTCTGACT-AGTGGTTTCATCTTTGTCATTTT
1 TGACTCATGGTTTAATCCC-ATTGCTTTTAATTTTCTAACTCA-TGGTTTAATCCTGGTCATTTT
3439352 CATTTC
64 CATTTC
*
3439358 TGACTCGTGGTTTAAT-CC-TTGTCATTTTAATTTTCTAACTCATGGTTTAATCCTGGTCATTTT
1 TGACTCATGGTTTAATCCCATTG-C-TTTTAATTTTCTAACTCATGGTTTAATCCTGGTCATTTT
3439421 TAGTTTTAGA
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
67 3 0.06
68 1 0.02
69 34 0.63
70 16 0.30
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.50
Consensus pattern (69 bp):
TGACTCATGGTTTAATCCCATTGCTTTTAATTTTCTAACTCATGGTTTAATCCTGGTCATTTTCA
TTTC
Found at i:3440309 original size:136 final size:137
Alignment explanation
Indices: 3440128--3440384 Score: 322
Period size: 136 Copynumber: 1.9 Consensus size: 137
3440118 ATTTCGATCA
* * *
3440128 TTTTTATTTCTCTAACTTGTGATTTAATACCGATCATTTTCATTTTCTAACTCATGATTTATTCT
1 TTTTCATTTCTCTAACTTGTGAGTTAATACCGATCATTTTCATTTTCTAACTCATGATTTAATCT
* * * * *
3440193 CAGTTGTTTTCATTTTTTAACCCATGGTTTAAT-CTCAGTCATTTTTATTTTTTGACGGTTTAGT
66 CAGTCGTTTTCATTTTCTAACCCATGATTTAATCCT-AGTCATTTTCATTTTCTGACGGTTTAGT
3440257 CCTGGTTG
130 CCTGGTTG
* * * * *
3440265 TTTTCATTT-TCTAACTTGTGAGTTAAT-CCTAGTCATTTTTATTTTCTGACTCGTGGTTTAATC
1 TTTTCATTTCTCTAACTTGTGAGTTAATACCGA-TCATTTTCATTTTCTAACTCATGATTTAATC
* * * *
3440328 TTAGTCGTTTTTATTTTCTAACTCGTGATTTAATCCTAGTCATTTTCATTTTCTGAC
65 TCAGTCGTTTTCATTTTCTAACCCATGATTTAATCCTAGTCATTTTCATTTTCTGAC
3440385 TCATAGTTTA
Statistics
Matches: 101, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
135 3 0.03
136 88 0.87
137 10 0.10
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (137 bp):
TTTTCATTTCTCTAACTTGTGAGTTAATACCGATCATTTTCATTTTCTAACTCATGATTTAATCT
CAGTCGTTTTCATTTTCTAACCCATGATTTAATCCTAGTCATTTTCATTTTCTGACGGTTTAGTC
CTGGTTG
Found at i:3441338 original size:18 final size:18
Alignment explanation
Indices: 3441282--3441343 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 18
3441272 TTAATCTCGG
*
3441282 TCATTTTCATTTTTTGAC
1 TCATTTTTATTTTTTGAC
* * *
3441300 TCATGATTTAATTTGTG--
1 TCAT-TTTTATTTTTTGAC
3441317 TCATTTTTATTTTTTGAC
1 TCATTTTTATTTTTTGAC
*
3441335 TCATGTTTA
1 TCATTTTTA
3441344 ATCTTGGTCA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
16 9 0.27
17 4 0.12
18 12 0.36
19 8 0.24
ACGTcount: A:0.19, C:0.11, G:0.10, T:0.60
Consensus pattern (18 bp):
TCATTTTTATTTTTTGAC
Found at i:3441405 original size:69 final size:69
Alignment explanation
Indices: 3441247--3441410 Score: 190
Period size: 69 Copynumber: 2.3 Consensus size: 69
3441237 TTAATCTCAA
* * * *
3441247 TCATTTTCATTTTATGACCCATGGTTTAATCTCGGTCATTTTCATTTTTTGACTCATGATTTAAT
1 TCATTTTCATTTTA-GACTCATGGTTTAATCTCGGTCATTTTCAATTTCTAACTCATGATTTAAT
3441312 TTGTG
65 TTGTG
* * *
3441317 TCATTTTTATTTTTTGACTCAT-GTTTAATCTTGGTCA-TTTCTAATTTCTAACTCATGATTTAA
1 TCATTTTCA-TTTTAGACTCATGGTTTAATCTCGGTCATTTTC-AATTTCTAACTCATGATTTAA
3441380 TCTTG-G
64 T-TTGTG
*
3441386 TCATTTTCATTTTCAGACTCTTGGT
1 TCATTTTCATTTT-AGACTCATGGT
3441411 CATGATCTAA
Statistics
Matches: 79, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
68 8 0.10
69 48 0.61
70 19 0.24
71 4 0.05
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (69 bp):
TCATTTTCATTTTAGACTCATGGTTTAATCTCGGTCATTTTCAATTTCTAACTCATGATTTAATT
TGTG
Found at i:3441496 original size:19 final size:19
Alignment explanation
Indices: 3441440--3441496 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 19
3441430 TTTTCATTTT
3441440 TCTGACTCATGGTTTAAT-
1 TCTGACTCATGGTTTAATC
* * *
3441458 TCTG-GTCAT-TTTTATTTC
1 TCTGACTCATGGTTTA-ATC
3441476 TCTGACTCATGGTTTAATC
1 TCTGACTCATGGTTTAATC
3441495 TC
1 TC
3441497 CATTGTCTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 7
0.69 0.14 0.17
Matches are distributed among these distances:
16 4 0.14
17 5 0.17
18 8 0.28
19 8 0.28
20 4 0.14
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (19 bp):
TCTGACTCATGGTTTAATC
Found at i:3441963 original size:176 final size:175
Alignment explanation
Indices: 3441573--3441969 Score: 478
Period size: 176 Copynumber: 2.3 Consensus size: 175
3441563 ATCTCGATTG
* * ** * *
3441573 TTTTCATTTTCTAACTCGTGCTTTAATCCCTATTGTTTTTAATTTTTTGACTCGTGTTTTAATCC
1 TTTTCATTTTCTGACTCATGCTTTAATCCCTATCATTTTT-ATTTTTTGACTCATGATTTAATCC
* * *
3441638 CGATCGTTTTTAGTTTTACACTCATGATTTAATTTCGGTCATTTTTATTTTTTAACTCATGATTT
65 CGATCGTTTTTAGTTTTACACTCATCATTTAATTTCGGTCATTTTCATTTTCTAACTCATGATTT
* *
3441703 AATTTCGGTCATTTTCATTTTTTGACAAGTGGTTTAATCCTGGTCA
130 AATCTCGGTCATTTTCATCTTTTGACAAGTGGTTTAATCCTGGTCA
* * * * *
3441749 TTTTCATTTTTTGACTCATGATTTGATTCC-AGTCATTTTTATTTCTTTGACTCATGATTTAATG
1 TTTTCATTTTCTGACTCATGCTTTAATCCCTA-TCATTTTTATTT-TTTGACTCATGATTTAATC
** ** *
3441813 CCGATTTTTTTCTTTTTTTA-ACTCATCATTTAATTAT-GGTCATTTTCATTTTCTAACTCATGG
64 CCGATCGTTTT-TAGTTTTACACTCATCATTTAATT-TCGGTCATTTTCATTTTCTAACTCATGA
** * *
3441876 TTTAATCTCGGTCATTTTCA-CTTTTGACTTGTGGTTTAATCCTTGTTA
127 TTTAATCTCGGTCATTTTCATCTTTTGACAAGTGGTTTAATCCTGGTCA
*
3441924 TTTTACATTTTCTGACTCATGCTTTAATCCCTATCATTTTCATTTT
1 TTTT-CATTTTCTGACTCATGCTTTAATCCCTATCATTTTTATTTT
3441970 CCTATGCGTT
Statistics
Matches: 185, Mismatches: 30, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
175 33 0.18
176 144 0.78
177 8 0.04
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.53
Consensus pattern (175 bp):
TTTTCATTTTCTGACTCATGCTTTAATCCCTATCATTTTTATTTTTTGACTCATGATTTAATCCC
GATCGTTTTTAGTTTTACACTCATCATTTAATTTCGGTCATTTTCATTTTCTAACTCATGATTTA
ATCTCGGTCATTTTCATCTTTTGACAAGTGGTTTAATCCTGGTCA
Found at i:3442652 original size:176 final size:173
Alignment explanation
Indices: 3442284--3442722 Score: 437
Period size: 176 Copynumber: 2.5 Consensus size: 173
3442274 AATTTTCACT
* * * *
3442284 ATCATTTTTATTTC-CTGACTCGTGGTTTAATCTTGATCGTTTTCATTTTTTGACTCGTGATTTA
1 ATCATTTTTATTTCTCTAACTCATGGTTTAATCCTGGTCGTTTTCATTTTTTGACTCGTG-TTTA
* * * *
3442348 ATTGTGATCATTTTTATTTCTTTAACTTGTGATTTAATACCGATCATTTTCATTTTTTTACTCAT
65 A-TCTGATCATTTTTATTT-TCTAACTTGTGATTTAATACCGATCATTTTCATTTTCTAACTCAT
* * *
3442413 GATTTAATCTCGGTCGTTTTCATTTTCTAACCCATGGTCTAATCTTG
128 GATTTAATCTCGATCCTTTTAATTTTCTAA-CCATGGTCTAATCTTG
* * *
3442460 ATC-TTTTTCA-TTCTCTAACCCATGGTTTAATCCTGGTCATTTTCATTTTTTGAATCGTCGTTT
1 ATCATTTTT-ATTTCTCTAACTCATGGTTTAATCCTGGTCGTTTTCATTTTTTGACTCGT-GTTT
* * ** *
3442523 AATCCTGGTCATTTTTATTTTCTGACTTGTGATTTAAT-CTTAGTCGTTTTCATTTTCTAACTCA
64 AAT-CTGATCATTTTTATTTTCTAACTTGTGATTTAATACCGA-TCATTTTCATTTTCTAACTCA
* * *
3442587 TCG-TTTAAT-TCCTATCCTTTTAATTTTCTGA-CATGTGATTTAAT-TCTG
127 T-GATTTAATCT-CGATCCTTTTAATTTTCTAACCATG-G-TCTAATCT-TG
* * *
3442635 TTCATTTTTATTTCTCTAACTCATGGTTTAATCACT-GTTGTCTTCATTTTTTGACTCGTGGTTT
1 ATCATTTTTATTTCTCTAACTCATGGTTTAATC-CTGGTCGTTTTCATTTTTTGACTCGT-GTTT
3442699 AATCTCGATCATTTTTTATTTTCT
64 AATCT-GATCA-TTTTTATTTTCT
3442723 TACTAGTGTC
Statistics
Matches: 218, Mismatches: 30, Indels: 29
0.79 0.11 0.10
Matches are distributed among these distances:
173 4 0.02
174 5 0.02
175 77 0.35
176 117 0.54
177 15 0.07
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.52
Consensus pattern (173 bp):
ATCATTTTTATTTCTCTAACTCATGGTTTAATCCTGGTCGTTTTCATTTTTTGACTCGTGTTTAA
TCTGATCATTTTTATTTTCTAACTTGTGATTTAATACCGATCATTTTCATTTTCTAACTCATGAT
TTAATCTCGATCCTTTTAATTTTCTAACCATGGTCTAATCTTG
Found at i:3442960 original size:20 final size:18
Alignment explanation
Indices: 3442918--3442966 Score: 59
Period size: 20 Copynumber: 2.8 Consensus size: 18
3442908 TATAATGCCA
3442918 ATCATTTTCA-TTTTTTG
1 ATCATTTTCATTTTTTTG
3442935 A-C-TTTTCATTTAATTTTG
1 ATCATTTTCATTT--TTTTG
3442953 ATCATTTTCATTTT
1 ATCATTTTCATTTT
3442967 CTAACATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
15 6 0.22
16 3 0.11
17 1 0.04
18 7 0.26
19 1 0.04
20 9 0.33
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.63
Consensus pattern (18 bp):
ATCATTTTCATTTTTTTG
Found at i:3443085 original size:32 final size:32
Alignment explanation
Indices: 3443049--3443109 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
3443039 TGACTTGTAC
*
3443049 TTTAATCCCTATCGTTTTCAGTTTTTGACATG
1 TTTAATCCCTATCATTTTCAGTTTTTGACATG
* * *
3443081 TTTAATCCTTATCATTTTTATTTTTTGAC
1 TTTAATCCCTATCATTTTCAGTTTTTGAC
3443110 TTATGATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.08, T:0.56
Consensus pattern (32 bp):
TTTAATCCCTATCATTTTCAGTTTTTGACATG
Found at i:3443278 original size:69 final size:70
Alignment explanation
Indices: 3443202--3443356 Score: 170
Period size: 69 Copynumber: 2.2 Consensus size: 70
3443192 TCCTAATTGC
* * * * *
3443202 TTTCATTTTCTCACTCATGGTTTAA-TCTTGGTGGTTTTCATTTTCTCA-TGAGGGTTTAGTCCC
1 TTTCATTTTCTGACTCATGCTTTAATTC-TGGTGGTTTTCATTTTCTAACTCAGGGTTTACTCCC
*
3443265 AGTCAT
65 AATCAT
* ** * * * *
3443271 TTTCATTTTTTGACTTGTGCTTTAATTCTGGTTGTTTTCATTTTTTAACTCATGTTTTACTCCCA
1 TTTCATTTTCTGACTCATGCTTTAATTCTGGTGGTTTTCATTTTCTAACTCAGGGTTTACTCCCA
3443336 ATCAT
66 ATCAT
3443341 TTTCATTTTCTGACTC
1 TTTCATTTTCTGACTC
3443357 GTAATTCAAT
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
69 37 0.54
70 32 0.46
ACGTcount: A:0.16, C:0.19, G:0.13, T:0.52
Consensus pattern (70 bp):
TTTCATTTTCTGACTCATGCTTTAATTCTGGTGGTTTTCATTTTCTAACTCAGGGTTTACTCCCA
ATCAT
Found at i:3444559 original size:44 final size:43
Alignment explanation
Indices: 3444473--3444566 Score: 102
Period size: 44 Copynumber: 2.2 Consensus size: 43
3444463 TTTAATCTTG
* * * *
3444473 ATCATTTTCATTTTCTAACTCATAATTTAATTTTGATAATTTT
1 ATCATTTTCATTTCCTAACTCATAATTTAATTCTCAAAATTTT
**
3444516 CATCATTTTCATTTCCTAACTCATGGTTTAA-TCTCAAACATTTT
1 -ATCATTTTCATTTCCTAACTCATAATTTAATTCTCAAA-ATTTT
3444560 -TCATTTT
1 ATCATTTT
3444567 TTGACTTGTG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
42 7 0.16
43 4 0.09
44 32 0.74
ACGTcount: A:0.28, C:0.17, G:0.03, T:0.52
Consensus pattern (43 bp):
ATCATTTTCATTTCCTAACTCATAATTTAATTCTCAAAATTTT
Found at i:3444776 original size:69 final size:70
Alignment explanation
Indices: 3444648--3444781 Score: 164
Period size: 69 Copynumber: 1.9 Consensus size: 70
3444638 CTAAGTCATG
* * *
3444648 ATTTAATCTCAGTCGCTTTCATTTTCTAACCCAAGGTTTAATCCCGATCGTTTTCATTTTTTGAC
1 ATTTAATCTCAGTCGCTTTCATTTTCTAACCCAAGATTTAATCCAGATCATTTTCATTTTTTGAC
3444713 CTATT
66 CTATT
* * * ** *
3444718 ATTTAATCT-AGTCGTTTTCATTTTCTGACTCGTGATTTAATCCA-AGTCATTTTTATTTTTTGA
1 ATTTAATCTCAGTCGCTTTCATTTTCTAACCCAAGATTTAATCCAGA-TCATTTTCATTTTTTGA
3444781 C
65 C
3444782 TCATGTTTAA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
68 1 0.02
69 44 0.81
70 9 0.17
ACGTcount: A:0.22, C:0.19, G:0.10, T:0.49
Consensus pattern (70 bp):
ATTTAATCTCAGTCGCTTTCATTTTCTAACCCAAGATTTAATCCAGATCATTTTCATTTTTTGAC
CTATT
Found at i:3444819 original size:33 final size:35
Alignment explanation
Indices: 3444698--3444827 Score: 133
Period size: 34 Copynumber: 3.8 Consensus size: 35
3444688 ATCCCGATCG
* * * * *
3444698 TTTTCATTTTTTGAC-CTATTATTTAAT-CTAGTCG
1 TTTTTATTTTTTGACTC-ATGATTTAATCCAAGACA
* * * *
3444732 TTTTCATTTTCTGACTCGTGATTTAATCCAAGTCA
1 TTTTTATTTTTTGACTCATGATTTAATCCAAGACA
*
3444767 TTTTTATTTTTTGACTCATG-TTTAATCCTAGACA
1 TTTTTATTTTTTGACTCATGATTTAATCCAAGACA
3444801 TTTTTATTTTTTGA-TCATGATTTAATC
1 TTTTTATTTTTTGACTCATGATTTAATC
3444828 TTGGTCGTTT
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
33 5 0.06
34 55 0.66
35 23 0.28
ACGTcount: A:0.22, C:0.15, G:0.09, T:0.54
Consensus pattern (35 bp):
TTTTTATTTTTTGACTCATGATTTAATCCAAGACA
Found at i:3444844 original size:68 final size:69
Alignment explanation
Indices: 3444664--3444844 Score: 163
Period size: 69 Copynumber: 2.6 Consensus size: 69
3444654 TCTCAGTCGC
* * * * *
3444664 TTTCATTTTCTAACCCAAGGTTTAATCC-CGATCGTTTTCATTTTTTGACCTATTATTTAATCTA
1 TTTCATTTTCTGACTCATGATTTAATCCAAG-TCGTTTTCATTTTTTGACCTATTATTTAATCTA
* *
3444728 GTCGT
65 GACAT
* * * *
3444733 TTTCATTTTCTGACTCGTGATTTAATCCAAGTCATTTTTATTTTTTGA-CTCA-TGTTTAATCCT
1 TTTCATTTTCTGACTCATGATTTAATCCAAGTCGTTTTCATTTTTTGACCT-ATTATTTAAT-CT
3444796 AGACAT
64 AGACAT
* * ***
3444802 TTTTATTTTTTGA-TCATGATTTAATCTTGGTCGTTTTCATTTT
1 TTTCATTTTCTGACTCATGATTTAATCCAAGTCGTTTTCATTTT
3444845 CAAACTCATG
Statistics
Matches: 90, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
68 33 0.37
69 56 0.62
70 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.10, T:0.52
Consensus pattern (69 bp):
TTTCATTTTCTGACTCATGATTTAATCCAAGTCGTTTTCATTTTTTGACCTATTATTTAATCTAG
ACAT
Found at i:3445838 original size:222 final size:223
Alignment explanation
Indices: 3445414--3445843 Score: 483
Period size: 222 Copynumber: 1.9 Consensus size: 223
3445404 TATTGGTCGT
* * *
3445414 TTTTCATTTTCTGACTCATCATTTAATCTCAATCGCTTTCATTTTCTGACTCGTGGTTTAATCCT
1 TTTTCATTTTCTGACTCATCATTTAATCTCAATCACTTTCATTTTCTGACTCGTGATTTAATCCG
* *
3445479 AGTGGTTTTCATTTTCTCACTCAGGGTTTAGTCCCAATCATTTTCATTTTCTGACTCATGCTTTA
66 AGTGGTTTTCATTTTCTCACCCAGGGTTTAGTCCCAATCATTTTCATTTTCTGACTCATGATTTA
* * * **
3445544 ATTCTAGTCGTTTTAATTTTTTAACTCACGTTTTACTCCCAGTCATTTTCATTTGCTGACTTGTA
131 ATTCGAGTCGTTTTAATTTTTTAACTCACGATTTAATCCCAGTCATTTTCATTTGCTGACTCATA
3445609 ATTTAATT-CCAATAATTTTCATTATTG
196 ATTTAATTACCAATAATTTTCATTATTG
** ** *
3445636 TTTTCATTTAT-TGACTCATGGTTTAATCTTGATCATTTTCATTTTCTGACTCGTGATTTAATCT
1 TTTTCATTT-TCTGACTCATCATTTAATCTCAATCACTTTCATTTTCTGACTCGTGATTTAATC-
* * * *** *
3445700 CGA-TTGTTTTCATTTTCTGACCCATGGTTTA-TACCTTGTCATTTTCATTTTCTGACTTATGAT
64 CGAGTGGTTTTCATTTTCTCACCCAGGGTTTAGT-CCCAATCATTTTCATTTTCTGACTCATGAT
* * * * ** * * **
3445763 TTAATTCGGGTTGTTTTTATTTTTTGACTCGTGATTTAATCTC-GATCGTTTTCATTTTTTGACT
128 TTAATTCGAGTCGTTTTAATTTTTTAACTCACGATTTAATCCCAG-TCATTTTCATTTGCTGACT
**
3445827 CATGGTTTAATTACCAA
192 CATAATTTAATTACCAA
3445844 CCTTTTCTTT
Statistics
Matches: 169, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
221 2 0.01
222 160 0.95
223 7 0.04
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (223 bp):
TTTTCATTTTCTGACTCATCATTTAATCTCAATCACTTTCATTTTCTGACTCGTGATTTAATCCG
AGTGGTTTTCATTTTCTCACCCAGGGTTTAGTCCCAATCATTTTCATTTTCTGACTCATGATTTA
ATTCGAGTCGTTTTAATTTTTTAACTCACGATTTAATCCCAGTCATTTTCATTTGCTGACTCATA
ATTTAATTACCAATAATTTTCATTATTG
Found at i:3447234 original size:104 final size:103
Alignment explanation
Indices: 3446733--3447416 Score: 337
Period size: 106 Copynumber: 6.5 Consensus size: 103
3446723 ATACTGATCA
* * * * * * *** *
3446733 TTTTCATTTTATGACTCATGATTTAATTTCGGTCGTTTACATTTTCTAACCCATG-GTTTAATCC
1 TTTTCATTTT-TGACTCATGATTTAATTTTGATCATTTTCATTTTTTGACTTGTGAG-TTAATAC
* * * * *** *
3446797 CGATCATTTTCATTTTTTGACTCATGATTTAATCCGGGTCA
64 CAATCGTTTTCATTTTTTGA-TCGTGGTTTAATCTTAGTCG
* * * * * * * *
3446838 TTTTTATTTTTTGACTCGTGGTTTAATCTTGATCATTTTTATTTTCTGACTTTTGATTTAAT-CT
1 TTTTCA-TTTTTGACTCATGATTTAATTTTGATCATTTTCATTTTTTGACTTGTGAGTTAATAC-
* * * *
3446902 CGATCATTTTCATTTTTTGATTCGTGGTTTAATTCCTA-TCC
64 CAATCGTTTTCATTTTTTGA-TCGTGGTTTAA-TCTTAGTCG
* * * * * *
3446943 TTTTCATTTTCTAACTCGTGATTTAATTCT-AGTCATTTTTATTTCTCTGACTCGTG-GTTTAAT
1 TTTTCATTTT-TGACTCATGATTTAATTTTGA-TCATTTTCATTT-TTTGACTTGTGAG-TTAAT
** * ** ** ** *
3447006 -CCTCGTTGTTTTCATTTTTTGACTTATAATTTAATC-CCGATCAT
62 ACC-AATCGTTTTCATTTTTTGA-TCGTGGTTTAATCTTAG-TC-G
* * * * * *
3447050 TTTTCATTTTCTGACT-AGTGGTTTCATCTCGATCATTTTCATTTTCTGACCTGTG-GTTTAATA
1 TTTTCATTTT-TGACTCA-TGATTTAATTTTGATCATTTTCATTTTTTGACTTGTGAG-TTAATA
* *
3447113 CCTATCGTTTTAATTTTTTGATGCGTGGTTTAATCTTAGTCG
63 CCAATCGTTTTCATTTTTTGAT-CGTGGTTTAATCTTAGTCG
* *
3447155 TTTTCATTTTTAGAATCATGATTTAATTTTGATCATTTT-ATTTTTTGACTTGTGAGTTAATTCC
1 TTTTCATTTTT-GACTCATGATTTAATTTTGATCATTTTCATTTTTTGACTTGTGAGTTAATACC
* ** *
3447219 AATCGTTTTCATTTTTTGACCAGTGGTTTAATCCCAATCG
65 AATCGTTTTCATTTTTTGATC-GTGGTTTAATCTTAGTCG
* * * * * * * *
3447259 TTTTTATTTTCTGACTCATGATTTGATTCTGGTCATTTTTATTTCTTTAACTTGTGATTTAATGC
1 TTTTCATTTT-TGACTCATGATTTAATTTTGATCATTTTCATTT-TTTGACTTGTGAGTTAATAC
* * * ** * *
3447324 TAATCATTTTCATTTTTCGACTCGTCATTTAAT-TCTGGTCA
64 CAATCGTTTTCATTTTTTGA-TCGTGGTTTAATCT-TAGTCG
* * * * *
3447365 TTTTCATTTTTTGACTCATGGTTTAATCTCGGTCATTTTCACTTTTTGACTT
1 TTTTCA-TTTTTGACTCATGATTTAATTTTGATCATTTTCATTTTTTGACTT
3447417 ATGGTTTAAT
Statistics
Matches: 449, Mismatches: 103, Indels: 54
0.74 0.17 0.09
Matches are distributed among these distances:
103 1 0.00
104 91 0.20
105 152 0.34
106 163 0.36
107 41 0.09
108 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.52
Consensus pattern (103 bp):
TTTTCATTTTTGACTCATGATTTAATTTTGATCATTTTCATTTTTTGACTTGTGAGTTAATACCA
ATCGTTTTCATTTTTTGATCGTGGTTTAATCTTAGTCG
Found at i:3448937 original size:82 final size:82
Alignment explanation
Indices: 3448843--3449002 Score: 196
Period size: 82 Copynumber: 2.0 Consensus size: 82
3448833 TTTAATTGCG
* * * * * *
3448843 ATCATTTTCATTTTTTAACTCG-CATTTTTATCTTGGTCATTTACATTTTTTGACTGGTAATTTA
1 ATCATATTCATTTCTTAACTCGTCA-TTTGATCTCGATCATTTACATTTTTTGACTCGTAATTTA
*
3448907 ATTTTGATAATTTTAATT
65 ATTTCGATAATTTTAATT
* * * *
3448925 ATCATATTCATTTCTTGACTCGTGATTTGATCTCGATCATTTTCATTTTTTGACTCGTGATTTAA
1 ATCATATTCATTTCTTAACTCGTCATTTGATCTCGATCATTTACATTTTTTGACTCGTAATTTAA
*
3448990 TTTCGATCATTTT
66 TTTCGATAATTTT
3449003 TATTTCTCTG
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
82 64 0.98
83 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.10, T:0.54
Consensus pattern (82 bp):
ATCATATTCATTTCTTAACTCGTCATTTGATCTCGATCATTTACATTTTTTGACTCGTAATTTAA
TTTCGATAATTTTAATT
Found at i:3449271 original size:20 final size:20
Alignment explanation
Indices: 3449246--3449345 Score: 58
Period size: 20 Copynumber: 5.5 Consensus size: 20
3449236 ATCTAGTTGT
3449246 TTTAATTTTCTGACTCGTGA
1 TTTAATTTTCTGACTCGTGA
* *
3449266 TTTAA-TCTC-G-GTCGT--
1 TTTAATTTTCTGACTCGTGA
* * *
3449281 TTTCATTTTCGGACTCGTGG
1 TTTAATTTTCTGACTCGTGA
*
3449301 TTTAA-TTTCT-A-T--TGT
1 TTTAATTTTCTGACTCGTGA
*
3449316 TTTCATTTTCTGACTCGTGA
1 TTTAATTTTCTGACTCGTGA
*
3449336 CTTAATTTTC
1 TTTAATTTTC
3449346 GTCATTTTTA
Statistics
Matches: 58, Mismatches: 12, Indels: 20
0.64 0.13 0.22
Matches are distributed among these distances:
15 10 0.17
16 8 0.14
17 7 0.12
18 7 0.12
19 7 0.12
20 19 0.33
ACGTcount: A:0.16, C:0.17, G:0.15, T:0.52
Consensus pattern (20 bp):
TTTAATTTTCTGACTCGTGA
Found at i:3449591 original size:18 final size:17
Alignment explanation
Indices: 3449545--3449598 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
3449535 TTTAGACTCG
*
3449545 TTATTTAATTTCGGTCA
1 TTATTTAATTTTGGTCA
*
3449562 TT-TTTATTTTTTGGCTCA
1 TTATTTA-ATTTTGG-TCA
*
3449580 TTATTTAATTTTAGTCA
1 TTATTTAATTTTGGTCA
3449597 TT
1 TT
3449599 TTCATTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
16 4 0.13
17 12 0.40
18 10 0.33
19 4 0.13
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.61
Consensus pattern (17 bp):
TTATTTAATTTTGGTCA
Found at i:3451414 original size:82 final size:82
Alignment explanation
Indices: 3451257--3451414 Score: 183
Period size: 82 Copynumber: 1.9 Consensus size: 82
3451247 TAATTCCAAC
* * *
3451257 CGTTTTCATTTTTTAACTCATGTTTTAATCCTGATCATTTTCATTTTTTGACTCATAATTTAATT
1 CGTTTTCATTTTTTAACTCATGGTTTAATCCTGATCATTTTCATTTTCTAACTCATAATTTAATT
*
3451322 ATGGTAATTTTCATTAT
66 ATGATAATTTTCATTAT
* * * ** * *
3451339 CGTTTTCCTTTTTTGACTCGTGGTTTAAT-CTCGATTGTTTTCATTTTCTAACTCGTGATTTAAT
1 CGTTTTCATTTTTTAACTCATGGTTTAATCCT-GATCATTTTCATTTTCTAACTCATAATTTAAT
* *
3451403 TTTGATCATTTT
65 TATGATAATTTT
3451415 TATTTCTCTG
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
81 2 0.03
82 60 0.97
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.55
Consensus pattern (82 bp):
CGTTTTCATTTTTTAACTCATGGTTTAATCCTGATCATTTTCATTTTCTAACTCATAATTTAATT
ATGATAATTTTCATTAT
Found at i:3453379 original size:21 final size:21
Alignment explanation
Indices: 3453355--3453405 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
3453345 GCCATTGATA
3453355 GGATCGATCCCCTAATGGAAG
1 GGATCGATCCCCTAATGGAAG
3453376 GGATCGATCCCCTAATGGAAG
1 GGATCGATCCCCTAATGGAAG
3453397 GGATCGATC
1 GGATCGATC
3453406 AAGTCATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (21 bp):
GGATCGATCCCCTAATGGAAG
Found at i:3456183 original size:20 final size:21
Alignment explanation
Indices: 3456155--3456195 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
3456145 TTTTATACTT
3456155 AAATGTTTTATTAATTTTGTG
1 AAATGTTTTATTAATTTTGTG
* *
3456176 AAAT-TTTTTTTATTTTTGTG
1 AAATGTTTTATTAATTTTGTG
3456196 CCCAATTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.63
Consensus pattern (21 bp):
AAATGTTTTATTAATTTTGTG
Found at i:3459518 original size:35 final size:34
Alignment explanation
Indices: 3459472--3459883 Score: 129
Period size: 35 Copynumber: 11.8 Consensus size: 34
3459462 AAAGCTAACA
*
3459472 ATTTTCATTTTTTAACTAGTGGTTTAATCCCAATC
1 ATTTTCATTTTTTGACTA-TGGTTTAATCCCAATC
* * * *
3459507 ATTTTCATTTTTTGACTCATGCTTTGATTCCAGTC
1 ATTTTCATTTTTTGACT-ATGGTTTAATCCCAATC
* ** * *
3459542 ATTCTT-ATTTCTTTGACTCATGATTTAATGTCGACC
1 ATT-TTCATTT-TTTGACT-ATGGTTTAATCCCAATC
* ** * *
3459578 ATTTT--TTTTTT-ACTCGTCATTTAATTCTAATC
1 ATTTTCATTTTTTGACT-ATGGTTTAATCCCAATC
* * * * *
3459610 ATTTTCATTTTCTAACTCGTGGTTTAATCTCGATC
1 ATTTTCATTTTTTGACT-ATGGTTTAATCCCAATC
* *
3459645 ATTTTCACTTTTTGACTTATGGTTTAATCACC-ATT
1 ATTTTCATTTTTTGAC-TATGGTTTAATC-CCAATC
* * ***
3459680 ATTTTACATTTTCTGACTTATGCTTTAATCTTTATC
1 ATTTT-CATTTTTTGAC-TATGGTTTAATCCCAATC
* * ** * ***
3459716 GTATTCATTTTTTGACGCGTTGTTTAA-CCGTTGTC
1 ATTTTCATTTTTTGAC-TATGGTTTAATCC-CAATC
* * * ** *
3459751 ATTTTTA-TTTTTGACTCATGATTTACT-CTGATT
1 ATTTTCATTTTTTGACT-ATGGTTTAATCCCAATC
* * * * *
3459784 ATTTTCATTTTTTGACTCGTGGTATAATCTCAGTT
1 ATTTTCATTTTTTGACT-ATGGTTTAATCCCAATC
* * ** *
3459819 GTTTTCCATTTTCTGACTCATCATTTAATCCCGATC
1 ATTTT-CATTTTTTGACT-ATGGTTTAATCCCAATC
**
3459855 GCTTTCATTTTTTGACTCATGGTTTAATC
1 ATTTTCATTTTTTGACT-ATGGTTTAATC
3459884 TTAGTGTTTT
Statistics
Matches: 279, Mismatches: 82, Indels: 32
0.71 0.21 0.08
Matches are distributed among these distances:
32 19 0.07
33 11 0.04
34 39 0.14
35 133 0.48
36 77 0.28
ACGTcount: A:0.20, C:0.18, G:0.10, T:0.51
Consensus pattern (34 bp):
ATTTTCATTTTTTGACTATGGTTTAATCCCAATC
Found at i:3459707 original size:71 final size:69
Alignment explanation
Indices: 3459472--3459883 Score: 248
Period size: 71 Copynumber: 5.9 Consensus size: 69
3459462 AAAGCTAACA
* * * * * * * *
3459472 ATTTTCATTTTTTAACT-AGTGGTTTAATCCCAATCATTTTCATTTTTTGACTCATGCTTTGATT
1 ATTTTCATTTTCTGACTCA-TGCTTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATC
*
3459536 CCAGTC
65 CCA-TT
* * * * * **
3459542 ATTCTT-ATTTCTTTGACTCATGATTTAATGTCGACCATTTT--TTTTTT-ACTCGTCATTTAAT
1 ATT-TTCATTT-TCTGACTCATGCTTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAA-
** *
3459603 TCTAATC
63 TCCCATT
* * * * *
3459610 ATTTTCATTTTCTAACTCGTGGTTTAATCTCGATCATTTTCACTTTTTGACTTATGGTTTAATCA
1 ATTTTCATTTTCTGACTCATGCTTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATC-
3459675 CCATT
65 CCATT
* ** * * * * *
3459680 ATTTTACATTTTCTGACTTATGCTTTAATCTTTATCGTATTCATTTTTTGACGCGTTGTTTAA-C
1 ATTTT-CATTTTCTGACTCATGCTTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATC
**
3459744 CGTTGT
65 CCAT-T
* * * * * *
3459750 CATTTTTATTTT-TGACTCATGATTTACTCT-GATTATTTTCATTTTTTGACTCGTGGTATAATC
1 -ATTTTCATTTTCTGACTCATGCTTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATC
*
3459813 TCAGTT
65 CCA-TT
* * **
3459819 GTTTTCCATTTTCTGACTCAT-CATTTAATCCCGATCGCTTTCATTTTTTGACTCATGGTTTAAT
1 ATTTT-CATTTTCTGACTCATGC-TTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAAT
3459883 C
64 C
3459884 TTAGTGTTTT
Statistics
Matches: 258, Mismatches: 66, Indels: 35
0.72 0.18 0.10
Matches are distributed among these distances:
67 26 0.10
68 46 0.18
69 39 0.15
70 45 0.17
71 101 0.39
72 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.10, T:0.51
Consensus pattern (69 bp):
ATTTTCATTTTCTGACTCATGCTTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATCC
CATT
Found at i:3459812 original size:139 final size:141
Alignment explanation
Indices: 3459608--3459870 Score: 311
Period size: 139 Copynumber: 1.9 Consensus size: 141
3459598 TTAATTCTAA
* * * *
3459608 TCATTTTCATTTTCTAACTCGTGGTTTAATCTCGATCATTTTCACTTTTTGACTTATGGTTTAAT
1 TCATTTTCATTTTCTAACTCATGATTTAATCTCGATCATTTTCACTTTTTGACTCATGGTATAAT
* ***
3459673 CACCA-TTATTTTACATTTTCTGACTTATGC-TTTAATCTTTATCG-TATTCATTTTTTGACGCG
66 C-CCAGTTATTTTACATTTTCTGACTCAT-CATTTAATCCCGATCGCT-TTCATTTTTTGACGCG
3459735 TTGTTTAACCGTTG
128 TTGTTTAACCGTTG
* * * * * *
3459749 TCATTTTTATTTT-TGACTCATGATTTACTCT-GATTATTTTCATTTTTTGACTCGTGGTATAAT
1 TCATTTTCATTTTCTAACTCATGATTTAATCTCGATCATTTTCACTTTTTGACTCATGGTATAAT
* * *
3459812 CTCAGTTGTTTTCCATTTTCTGACTCATCATTTAATCCCGATCGCTTTCATTTTTTGAC
66 CCCAGTTATTTTACATTTTCTGACTCATCATTTAATCCCGATCGCTTTCATTTTTTGAC
3459871 TCATGGTTTA
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
138 3 0.03
139 72 0.71
140 15 0.15
141 12 0.12
ACGTcount: A:0.19, C:0.18, G:0.11, T:0.51
Consensus pattern (141 bp):
TCATTTTCATTTTCTAACTCATGATTTAATCTCGATCATTTTCACTTTTTGACTCATGGTATAAT
CCCAGTTATTTTACATTTTCTGACTCATCATTTAATCCCGATCGCTTTCATTTTTTGACGCGTTG
TTTAACCGTTG
Found at i:3459884 original size:71 final size:70
Alignment explanation
Indices: 3459494--3461038 Score: 431
Period size: 70 Copynumber: 21.9 Consensus size: 70
3459484 TAACTAGTGG
* * * ** *
3459494 TTTAATCCCAATCATTTTCATTTTTTGACTCATGCTTTGAT-TCCAGTCATTCTT-ATTTCTTTG
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCT-CAGTTGTT-TTCATTT-TCTG
*
3459557 ACTCATGA
63 ACTCATCA
** * * ** * ** *
3459565 TTTAATGTCGACCATTTT--TTTTTT-ACTCGTCATTTAAT-TCTAATCATTTTCATTTTCTAAC
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTC-AGTTGTTTTCATTTTCTGAC
* **
3459626 TCGTGG
65 TCATCA
* * * * *
3459632 TTTAATCTCGATCATTTTCACTTTTTGACTTATGGTTTAATCACCA-TTATTTTACATTTTCTGA
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATC-TCAGTTGTTTT-CATTTTCTGA
*
3459696 CTTATGC-
64 CTCAT-CA
*** * * * * * *
3459703 TTTAATCTTTATCGTATTCATTTTTTGACGCGTTGTTTAA-C-C-GTTGTCATTTTTATTTT-TG
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTTG---TTTTCATTTTCTG
*
3459764 ACTCATGA
63 ACTCATCA
* * * * *
3459772 TTTACT-CTGATTATTTTCATTTTTTGACTCGTGGTATAATCTCAGTTGTTTTCCATTTTCTGAC
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTTGTTTT-CATTTTCTGAC
3459836 TCATCA
65 TCATCA
** * * *
3459842 TTTAATCCCGATCGCTTTCATTTTTTGACTCATGGTTTAATCTTAG-TGTTTTTATTTTCTCACT
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTTGTTTTCATTTTCTGACT
***
3459906 CAGGG
66 CATCA
* * * * ** * ** * *
3459911 TTTAGT-CCTAGTCATTTTTAGTTTTTGACTTGTGCTTTAAT-TTTGATCGTTTTCATTTTTTGA
1 TTTAATCCCGA-TCATTTTCATTTTTTGACTCATGGTTTAATCTCAG-TTGTTTTCATTTTCTGA
* *
3459974 CTCGT-G
64 CTCATCA
** ** * * * ** * * *
3459980 TTTTTTCTTGGTCATTTTTATTTTCTGACTCATAATTTAATTTTGATAATTTTCATTATCATTTT
1 TTTAATCCCGATCATTTTCATTTTTTGACTC---A--T--GGTT--TAA-TCTCAGT-T-GTTTT
* * **
3460045 CATTTTTTGACTCGTTG
54 CATTTTCTGACTCATCA
* * * ** ** *
3460062 TTTAATCTCGATCATTTTCATTTTCTGACTCATGATTTAAT-TTTGATCATTTTTATTTCTCT-A
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTCAG-TTGTTTTCATTT-TCTGA
* ** *
3460125 GTTTGTGA
64 -CTCATCA
* * * * * ** * * *
3460133 TTTAATACTGATCGTTTTCATTTTTTGACTCATGATTTAATCTCAATCATTTTTATTTTCTAACC
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTTGTTTTCATTTTCTGACT
**
3460198 CATGG
66 CATCA
** * * * * * *
3460203 TTTAATCTTGGTCATTTTCATTTTCTGACCCATGTTTTAATCTCAGTCGTTTTCATTTTTTGACT
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTTGTTTTCATTTTCTGACT
* *
3460268 CGTGA
66 CATCA
* * * * * ** *
3460273 TTTAAT-CCTAGTCGTTTTCATTTTTTGACTCGTGATTTAATTCCCA-TCATTTTCATTTTCTTA
1 TTTAATCCCGA-TCATTTTCATTTTTTGACTCATGGTTTAA-TCTCAGTTGTTTTCATTTTCTGA
*
3460336 CTCATGA
64 CTCATCA
* * * * * * * * *
3460343 TTTAATTCTGATCATTTTTATTTCTCTGACTCATTGTTTAATCCCTGTTGTCTTCATTTTTTGAC
1 TTTAATCCCGATCATTTTCATTT-TTTGACTCATGGTTTAATCTCAGTTGTTTTCATTTTCTGAC
3460408 TCAT-A
65 TCATCA
* * * * * *
3460413 GTTTAATCTCGATCATTTTTCATTTTCTAACT-AGTGGTTTCATCTCAGTCGTTTTTATTTTCTG
1 -TTTAATCCCGATCA-TTTTCATTTTTTGACTCA-TGGTTTAATCTCAGTTGTTTTCATTTTCTG
* **
3460477 ACTCGTGG
63 ACTCATCA
* * * * * ** * *
3460485 TTTAATCCCTATCATTTTCAGTTTTAGACTCATGATTTAATTTCAGTCATTTTTATTTTCTAACT
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTTGTTTTCATTTTCTGACT
*
3460550 CATGA
66 CATCA
* * ** * * ** *
3460555 TTTAATTCCAATCGGTTTCATTTATTGACT-AGTGGTTTAATC-CTGATCATTTTCATTTTTTGA
1 TTTAATCCCGATCATTTTCATTTTTTGACTCA-TGGTTTAATCTCAG-TTGTTTTCATTTTCTGA
*
3460618 CTCATGA
64 CTCATCA
** * * * * *
3460625 TTTAATTTCAATCATTTTTATTTCTTTGACTCATGATTTAATGC-C-GTTCATTATCACTTTT-T
1 TTTAATCCCGATCATTTTCATTT-TTTGACTCATGGTTTAAT-CTCAGTT-GTTTTCA-TTTTCT
* *
3460687 GAATCATCG
62 GACTCATCA
*** * **
3460696 TTTAATTGTGATCGTTTTCATTTTTTGACTTGTGGTTTAATCTCTA-TCT-TTTTCACTTTT-TG
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTC-AGT-TGTTTTCA-TTTTCTG
** **
3460758 ACTTGTGG
63 ACTCATCA
* * ** * * * * ** *
3460766 TTTAATCTCTATTGTTTT-ATATTTTCTTACTCATGCTTTAATCCCTGTCATTTTCATTTTTTGA
1 TTTAATCCCGATCATTTTCAT-TTTT-TGACTCATGGTTTAATCTCAGTTGTTTTCATTTTCTGA
* * **
3460830 CACGTTG
64 CTCATCA
* * * * * * ** * * *
3460837 TTTAATCCCTATCATTTTCATTTTTTGACACGTTGTTTAATCCCTGTCATTTTTATTTTTTGATT
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTTGTTTTCATTTTCTGACT
*
3460902 CATGA
66 CATCA
* * ** ** * *
3460907 TTTAATCTCGGTTGTTTTCATTTTTTGACTTGTGGTATAATC-CTAGTTGTTTTTCATTTTATGA
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTC-AGTTG-TTTTCATTTTCTGA
*
3460971 CTCATCG
64 CTCATCA
* ** * * * *
3460978 TTTAATCCTGATCGCTTTCATTTTTTGCCTCATAGTTTAATC-CTGGTGGTTTTCATTTTCT
1 TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTC-AGTTGTTTTCATTTTCT
3461039 CATTCAGGGT
Statistics
Matches: 1109, Mismatches: 293, Indels: 145
0.72 0.19 0.09
Matches are distributed among these distances:
67 27 0.02
68 59 0.05
69 98 0.09
70 448 0.40
71 393 0.35
72 22 0.02
73 3 0.00
74 1 0.00
75 2 0.00
76 2 0.00
77 1 0.00
78 3 0.00
79 3 0.00
80 1 0.00
81 19 0.02
82 27 0.02
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (70 bp):
TTTAATCCCGATCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTTGTTTTCATTTTCTGACT
CATCA
Found at i:3459907 original size:139 final size:141
Alignment explanation
Indices: 3459608--3459907 Score: 308
Period size: 139 Copynumber: 2.1 Consensus size: 141
3459598 TTAATTCTAA
* * * * *
3459608 TCATTTTCATTTTCTAACTCGTGGTTTAATCTCGATCATTTTCACTTTTTGACTTATGGTTTAAT
1 TCATTTTTATTTTCTAACTCATGATTTAATCTCGATCATTTTCACTTTTTGACTCATGGTATAAT
* *** * *
3459673 CACCATTATTTTACATTTTCTGACTTATGCTTTAATCTTTATCGTATTCATTTTTTGACGCGTTG
66 CACCATTATTTTACATTTTCTGACTCATGCTTTAATCCCGATCGTATTCATTTTTTGACGCATGG
3459738 TTTAACCGTTG
131 TTTAACCGTTG
* * * * *
3459749 TCATTTTTATTTT-TGACTCATGATTTACTCT-GATTATTTTCATTTTTTGACTCGTGGTATAAT
1 TCATTTTTATTTTCTAACTCATGATTTAATCTCGATCATTTTCACTTTTTGACTCATGGTATAAT
* * * *
3459812 C-TCAGTTGTTTTCCATTTTCTGACTCAT-CATTTAATCCCGATCGCT-TTCATTTTTTGACTCA
66 CACCA-TTATTTTACATTTTCTGACTCATGC-TTTAATCCCGATCG-TATTCATTTTTTGACGCA
*
3459874 TGGTTTAATC-TTAG
128 TGGTTTAACCGTT-G
* *
3459888 T-GTTTTTATTTTCTCACTCA
1 TCATTTTTATTTTCTAACTCA
3459908 GGGTTTAGTC
Statistics
Matches: 131, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
138 15 0.11
139 89 0.68
140 15 0.11
141 12 0.09
ACGTcount: A:0.19, C:0.18, G:0.11, T:0.52
Consensus pattern (141 bp):
TCATTTTTATTTTCTAACTCATGATTTAATCTCGATCATTTTCACTTTTTGACTCATGGTATAAT
CACCATTATTTTACATTTTCTGACTCATGCTTTAATCCCGATCGTATTCATTTTTTGACGCATGG
TTTAACCGTTG
Found at i:3460003 original size:34 final size:35
Alignment explanation
Indices: 3459921--3460374 Score: 108
Period size: 35 Copynumber: 12.6 Consensus size: 35
3459911 TTTAGTCCTA
* *
3459921 GTCATTTTTAGTTTTTGACTTGTGCTTTAATTTTG
1 GTCATTTTTATTTTTTGACTCGTGCTTTAATTTTG
* * * *
3459956 ATCGTTTTCATTTTTTGACTCGTG-TTT-TTTCTTG
1 GTCATTTTTATTTTTTGACTCGTGCTTTAATT-TTG
* * **
3459990 GTCATTTTTATTTTCTGACTCATAATTTAATTTTG
1 GTCATTTTTATTTTTTGACTCGTGCTTTAATTTTG
* * *
3460025 ATAATTTTCATTATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
1 ------GTC---AT--TTTT-ATTTTTTGACTCG-TGCTTTAATTTTG
* * * * *
3460072 ATCATTTTCATTTTCTGACTCATGATTTAATTTTG
1 GTCATTTTTATTTTTTGACTCGTGCTTTAATTTTG
* * * * * **
3460107 ATCATTTTTATTTCTCT-AGTTTGTGATTTAATACTG
1 GTCATTTTTATTT-TTTGA-CTCGTGCTTTAATTTTG
* * * * * * **
3460143 ATCGTTTTCATTTTTTGACTCATGATTTAATCTCA
1 GTCATTTTTATTTTTTGACTCGTGCTTTAATTTTG
* * * * * * *
3460178 ATCATTTTTATTTTCTAACCCATGGTTTAATCTTG
1 GTCATTTTTATTTTTTGACTCGTGCTTTAATTTTG
* * * * * * **
3460213 GTCATTTTCATTTTCTGACCCATGTTTTAATCTCA
1 GTCATTTTTATTTTTTGACTCGTGCTTTAATTTTG
* * * ** *
3460248 GTCGTTTTCATTTTTTGACTCGTGATTTAATCCTA
1 GTCATTTTTATTTTTTGACTCGTGCTTTAATTTTG
* * * ***
3460283 GTCGTTTTCATTTTTTGACTCGTGATTTAATTCCC
1 GTCATTTTTATTTTTTGACTCGTGCTTTAATTTTG
* * * * *
3460318 ATCATTTTCATTTTCTT-ACTCATGATTTAATTCTG
1 GTCATTTTTATTTT-TTGACTCGTGCTTTAATTTTG
* *
3460353 ATCATTTTTATTTCTCTGACTC
1 GTCATTTTTATTT-TTTGACTC
3460375 ATTGTTTAAT
Statistics
Matches: 324, Mismatches: 72, Indels: 45
0.73 0.16 0.10
Matches are distributed among these distances:
33 2 0.01
34 26 0.08
35 225 0.69
36 39 0.12
38 2 0.01
41 4 0.01
44 2 0.01
46 4 0.01
47 19 0.06
48 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.10, T:0.54
Consensus pattern (35 bp):
GTCATTTTTATTTTTTGACTCGTGCTTTAATTTTG
Found at i:3460066 original size:47 final size:47
Alignment explanation
Indices: 3459991--3460083 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 47
3459981 TTTTTCTTGG
* * *
3459991 TCATTTTTATTTTCTGACTCATAATTTAATTTTGATAATTTTCATTA
1 TCATTTTCATTTTCTGACTCATAATTTAATCTCGATAATTTTCATTA
* * ** *
3460038 TCATTTTCATTTTTTGACTCGTTGTTTAATCTCGATCATTTTCATT
1 TCATTTTCATTTTCTGACTCATAATTTAATCTCGATAATTTTCATT
3460084 TTCTGACTCA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.23, C:0.14, G:0.06, T:0.57
Consensus pattern (47 bp):
TCATTTTCATTTTCTGACTCATAATTTAATCTCGATAATTTTCATTA
Found at i:3460083 original size:35 final size:35
Alignment explanation
Indices: 3460037--3463051 Score: 629
Period size: 35 Copynumber: 85.7 Consensus size: 35
3460027 AATTTTCATT
3460037 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * * *
3460072 ATCATTTTCATTTTCTGACTC-ATGATTTAATTTTG
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * * *
3460107 ATCATTTTTATTTCTCT-AGT-TTGTGATTTAATACT-G
1 ATCATTTTCATTT-TTTGACTCGT-TG-TTTAAT-CTCG
* * *
3460143 ATCGTTTTCATTTTTTGACTC-ATGATTTAATCTCA
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * * * * * *
3460178 ATCATTTTTATTTTCTAACCCATGGTTTAATCTTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * **
3460213 GTCATTTTCATTTTCTGAC-CCATGTTTTAATCTC-
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* *
3460247 AGTCGTTTTCATTTTTTGACTCG-TGATTTAATC-CT
1 A-TCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* *
3460282 AGTCGTTTTCATTTTTTGACTCG-TGATTTAAT-TCCC
1 A-TCATTTTCATTTTTTGACTCGTTG-TTTAATCT-CG
*
3460318 ATCATTTTCATTTTCTT-ACTC-ATGATTTAAT-TCTG
1 ATCATTTTCATTTT-TTGACTCGTTG-TTTAATCTC-G
* * * *
3460353 ATCATTTTTATTTCTCTGACTCATTGTTTAATCCCTG
1 ATCATTTTCATTT-TTTGACTCGTTGTTTAATCTC-G
** * * *
3460390 -TTGTCTTCATTTTTTGACTCATAGTTTAATCTCG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * * * *
3460424 ATCATTTTTCATTTTCTAACTAGTGGTTTCATCTC-
1 ATCA-TTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * * * * *
3460459 AGTCGTTTTTATTTTCTGACTCGTGGTTTAATCCCT
1 A-TCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * * *
3460495 ATCATTTTCAGTTTTAGACTC-ATGATTTAATTTC-
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * * * *
3460529 AGTCATTTTTATTTTCTAACTC-ATGATTTAAT-TCCA
1 A-TCATTTTCATTTTTTGACTCGTTG-TTTAATCT-CG
** * * *
3460565 ATCGGTTTCATTTATTGACTAGTGGTTTAATC-CTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTC-G
* * *
3460600 ATCATTTTCATTTTTTGACTC-ATGATTTAATTTCA
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* *
3460635 ATCATTTTTATTTCTTTGACTC-ATGATTTAATGC-CG
1 ATCATTTTCATTT-TTTGACTCGTTG-TTTAAT-CTCG
* * * * * * *
3460671 TTCATTATCACTTTTTGAATCATCGTTTAAT-TGTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCT-CG
* * * *
3460706 ATCGTTTTCATTTTTTGACTTGTGGTTTAATCTCT
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * * * *
3460741 ATCTTTTTCACTTTTTGACTTGTGGTTTAATCTCT
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
** * * *
3460776 ATTGTTTT-ATATTTTCTTACTC-ATGCTTTAATCCCTG
1 ATCATTTTCAT-TTTT-TGACTCGTTG-TTTAATCTC-G
* * *
3460813 -TCATTTTCATTTTTTGACACGTTGTTTAATCCCT
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* *
3460847 ATCATTTTCATTTTTTGACACGTTGTTTAATCCCTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTC-G
* * *
3460883 -TCATTTTTATTTTTTGATTC-ATGATTTAATCTCG
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* ** * * * *
3460917 GTTGTTTTCATTTTTTGACTTGTGGTATAATCCTAG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAAT-CTCG
* ** * * *
3460953 TTGTTTTTCATTTTATGACTCATCGTTTAATC-CTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTC-G
** * * *
3460988 ATCGCTTTCATTTTTTGCCTCATAGTTTAATC-CTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTC-G
* ** * * * * * *
3461023 GTGGTTTTCATTTTCTCATTCAG--GGTTAGTC-CC
1 ATCATTTTCATTTTTTGACTC-GTTGTTTAATCTCG
* * * * *
3461056 AGTCGTTTTCATTTTCTAACTTG-TGCTTTAATTTTCG
1 A-TCATTTTCATTTTTTGACTCGTTG-TTTAA-TCTCG
* * **
3461093 -TCATTTTCATTTTTTGATTTGTAATTTAAT-TCTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTC-G
* * * *
3461127 GTAATTTTCATTATCATTT---TCATT-TTCTAACTCGTGG
1 ATCATTTTCATT-T--TTTGACTCGTTGTT-TAA-TC-TCG
* * * * *
3461164 TTTAATCTCGATGGTTTTCATTTTTTGA-T-TTATGATTTAATTTTG
1 ----A--TC-AT-TTTC--ATTTTTTGACTCGT-TG-TTTAATCTCG
* * * * *
3461209 ATCATTTTTATTTCTCTGGCTTG-TGATTTCATAC-CG
1 ATCATTTTCATTT-TTTGACTCGTTG-TTTAAT-CTCG
* *
3461245 ATCATTTTCATTTTTTGACTC-ATGATTTAATCTTG
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * * * * *
3461280 ATCGTTTTTATTTTTTAACCCATTGTTTAATC-CTA
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTC-G
* * * * *
3461315 ATCTTTTTCATTTTTTGACCCATGGTTTAATC-CC
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * *
3461349 ATTCATTTTCATTTTCTAACTCG-TGATTTAATC-CA
1 A-TCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * *** *
3461384 AGTCATTTTTATTTTCTGACTCAAGGTTTAATCTCA
1 A-TCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * *
3461420 ATCGTTTTTATTTTTTGACTCG-TGATTTAATCTTG
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * * * *
3461455 GTCATTTTCATTTTCTGACTTGTAGTTTAAT-TCCC
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCT-CG
* * *
3461490 ATCGTTTTCATTTTCTGACTC-ATGATTTAAT-TCTG
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTC-G
* * * * * * * *
3461525 GTCATTTTTATTTCTCTGAGTCATGGTTTAGTCCCTG
1 ATCATTTTCATTT-TTTGACTCGTTGTTTAATCTC-G
** * *
3461562 -TTGTCTTCATTTTTTGACTCG-TGCTTTAATCCCG
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * * *
3461596 ATCATTTTTCATTTTTTGA-TTGGTGCCTTCATCTCG
1 ATCA-TTTTCATTTTTTGACTCGTTG-TTTAATCTCG
** * * * * *
3461632 -TCATTTTTGTTCTCTGACTCATGGTTTAATCCTTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAAT-CTCG
* *
3461667 -TCATTTTGATTTTTTGACTCGTGGTTTAATCTCG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * ** * *
3461701 ATCATTTTTAGTTTTAAACT--TATGATTTAATTTTG
1 ATCATTTTCATTTTTTGACTCGT-TG-TTTAATCTCG
* * ** *
3461736 ATCATTTTTATTTTTTGACTTGTAATTTAAT-TATG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCT-CG
** * * * *
3461771 ATCATTTTTGTTTCTTGACTAGTCGTTTAATCCCG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * * * * *
3461806 ATCATTTTGA--TTCTGACTTG-TGATTTGATTTCA
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * * *
3461839 ATCATTTTTATTTCATTGACTC-ATGATTTAATGTC-
1 ATCATTTTCATTT-TTTGACTCGTTG-TTTAATCTCG
* * **
3461874 AGTTATTTTTATTTTTTGACTTATCT-TTTAAT-TCTG
1 A-TCATTTTCATTTTTTGACTCGT-TGTTTAATCTC-G
* * *
3461910 ATCTTTTTCATTTTTTGACTCATGGTTTAATCTCG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * * * * * * *
3461945 GTCATTTCCAATTTTTGACTTGCTATTTAATCCCT
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
** * * * *
3461980 ATTGTTTTACATTTTTTGGCTTG-TGCTTTAATCCCT
1 ATCATTTT-CATTTTTTGACTCGTTG-TTTAATCTCG
* * *
3462016 ATCATTTTCATTTTTTGA-TGTGTTGTTTAATCCCT
1 ATCATTTTCATTTTTTGACT-CGTTGTTTAATCTCG
* *
3462051 AT-ATTTTTATTTTTTGACTC-CTGTTTTAATCTCG
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * * * *
3462085 ATCATTTTCTTTTTTTGACTCATGGTATAATCCCTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTC-G
* * *
3462121 -TCATTTTTCATTTTTGGACTCATTGTTTAATC-CTA
1 ATCA-TTTTCATTTTTTGACTCGTTGTTTAATCTC-G
*** * * *
3462156 ATTGCTTTCATTTTTTGACTCATGGTTTAATC-CT
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
** * * * *
3462190 AGTGGTTTTCATTTTTTAACTC-ATGTTTTGATCTTG
1 A-TCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * **
3462226 GTCATTTTCATTTTTTGATTCGTAATTTAAT-TCTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTC-G
* * * * *
3462261 GTCATTTTTATTTCTCTGACTTGTGGTTTAATCCTCG
1 ATCATTTTCATTT-TTTGACTCGTTGTTTAAT-CTCG
** * * * *
3462298 -TTGTCTTCATTTTTTGACTTGTGGTTTAA-CCCTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTC-G
* * * *
3462332 ATCATTTTTCATTTTTTGACTAGTAGTTTCATCT-T
1 ATCA-TTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * * * *
3462367 AGTCATTTTCATTTTTTAACTTGTGGTTTAATCCCT
1 A-TCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* ** * *
3462403 ATCGTTTTCATTTTTTGACTAATAGTTTAATC-CT
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * * * *
3462437 AGTCATTTTTAGTTTTAGACTC-ATGATTTAATTTC-
1 A-TCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * * *
3462472 AGTCATTTTTATTTTTTGACTC-ATGATTTAATTTTGG
1 A-TCATTTTCATTTTTTGACTCGTTG-TTTAA-TCTCG
* ** * * * * *
3462509 TTGGTTTT-ATTTCTTGACTAGTGGTTTAGTCTTG
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * * *
3462543 GTCATTTTCATTTTTTGACTCG-TGATTTGATTTTG
1 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* *
3462578 GTCATTTTTATTTCTTTGACTCG-TGATTTAATGC-CG
1 ATCATTTTCATTT-TTTGACTCGTTG-TTTAAT-CTCG
* * * * * ** *
3462614 GTTATTTTCTTTTTTTGAATCATCATTTAAT-TCT
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * * *
3462648 AGTCGTTTTAATTTTTTGACTCGTGGTTTAATCTCT
1 A-TCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * ** * *
3462684 ATCATTGTCATTTTTTTACTTATAGTTTAATC-CTT
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTC-G
** * *
3462719 ATTGTTTTACATTTTTTGACT--TATGCTTTAGTCCCTG
1 ATCATTTT-CATTTTTTGACTCGT-TG-TTTAATCTC-G
* *
3462756 -TCATTTTCATTTTTTGACGT-ATTGTTTAATCCTTG
1 ATCATTTTCATTTTTTGAC-TCGTTGTTTAAT-CTCG
* * *
3462791 -TCA--TT--TTTTTT-AGTTG-TGATTAATCTC-
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
** * * * * *
3462818 AGTTGTTTTCATTTTTTGACTTGTCGTATAATCCCA
1 A-TCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
* * **
3462854 ATCATTTTTCATTTTCTGACTCATCATTTAATCTCG
1 ATCA-TTTTCATTTTTTGACTCGTTGTTTAATCTCG
* *
3462890 ATCACTTTCATTTTTTTGACTC-ATGTTTTAATC-CTG
1 ATCATTTTCA-TTTTTTGACTCGTTG-TTTAATCTC-G
* ** * * * **** *
3462926 GTGGTTTTCATTTTCTCATTTAAGGATTAATCTC-
1 ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
**
3462960 AGTCATTTTCATTTTTTGACTCG-TGCTTTAAT-TTT
1 A-TCATTTTCATTTTTTGACTCGTTG-TTTAATCTCG
* * *
3462995 AGTCGTTTTCA-TTTTTAACTCGCAT-TTTAATCTCG
1 A-TCATTTTCATTTTTTGACTCG-TTGTTTAATCTCG
3463030 ATCA-TTTCATTTTTTGACTCGT
1 ATCATTTTCATTTTTTGACTCGT
3463052 AATTTAATTC
Statistics
Matches: 2221, Mismatches: 559, Indels: 402
0.70 0.18 0.13
Matches are distributed among these distances:
28 2 0.00
29 9 0.00
30 1 0.00
31 8 0.00
32 1 0.00
33 43 0.02
34 155 0.07
35 1447 0.65
36 496 0.22
37 25 0.01
38 8 0.00
39 2 0.00
41 1 0.00
43 1 0.00
44 5 0.00
45 5 0.00
46 4 0.00
47 6 0.00
48 2 0.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (35 bp):
ATCATTTTCATTTTTTGACTCGTTGTTTAATCTCG
Found at i:3460085 original size:82 final size:81
Alignment explanation
Indices: 3459960--3460114 Score: 238
Period size: 82 Copynumber: 1.9 Consensus size: 81
3459950 ATTTTGATCG
** * * *
3459960 TTTTCATTTTTTGACTCGTGTTTTTTCTTGGTCATTTTTATTTTCTGACTCATAATTTAATTTTG
1 TTTTCATTTTTTGACTCGTGTTTAATCTCGATCATTTTCATTTTCTGACTCATAATTTAATTTTG
3460025 ATAATTTTCATTATCA
66 ATAATTTTCATTATCA
*
3460041 TTTTCATTTTTTGACTCGTTGTTTAATCTCGATCATTTTCATTTTCTGACTCATGATTTAATTTT
1 TTTTCATTTTTTGACTCG-TGTTTAATCTCGATCATTTTCATTTTCTGACTCATAATTTAATTTT
*
3460106 GATCATTTT
65 GATAATTTT
3460115 TATTTCTCTA
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.19, C:0.14, G:0.09, T:0.58
Consensus pattern (81 bp):
TTTTCATTTTTTGACTCGTGTTTAATCTCGATCATTTTCATTTTCTGACTCATAATTTAATTTTG
ATAATTTTCATTATCA
Found at i:3460724 original size:141 final size:139
Alignment explanation
Indices: 3460037--3469453 Score: 987
Period size: 141 Copynumber: 66.5 Consensus size: 139
3460027 AATTTTCATT
* * * *
3460037 ATCATTTTCATTTTTTGACTCGTTG-TTTAATCTCGATCATTTTCATTTTCTGACTCATGATTTA
1 ATCATTTTCATTTTTTGACTC-ATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTA
** * * * * **
3460101 ATTTTGATCATTTTTATTTCTCT-AGTTTGTGATTTAATACT--GATCGTTTTCATTTTTTGACT
65 A-TCCGTTCATTTTCATTT-TTTGA-ATCATG-TTTAAT-CTCCGATCGTTTTCATTTTTTGACT
*
3460163 CA-TGATTTAAT-CTC
125 -AGTGGTTTAATCCTC
* * * * * * * * * *
3460177 AATCATTTTTATTTTCTAACCCATGGTTTAATCT-TGGTCATTTTCATTTTCTGACCCATGTTTT
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTTATTTTTTGACTCATGATTT
* * * *
3460241 AATCTCAG-TCGTTTTCATTTTTTGACTCGTGATTTAA--TCCTAGTCGTTTTCATTTTTTGACT
64 AATC-C-GTTCATTTTCATTTTTTGAATCATG-TTTAATCTCCGA-TCGTTTTCATTTTTTGACT
* *
3460303 CGTGATTTAATTCC-C
125 AGTGGTTTAA-TCCTC
*
3460318 ATCATTTTCATTTTCTT-ACTCATGATTTAAT-TCTGATCATTTTTATTTCTCTGACTCATTG-T
1 ATCATTTTCATTTT-TTGACTCATGATTTAATCTCT-ATCATTTTTATTT-TTTGACTCA-TGAT
* * * * * *
3460380 TTAATCCCTGTT-GTCTTCATTTTTTGACTCATAGTTTAATCT-CGATCATTTTTCATTTTCTAA
62 TTAAT-CC-GTTCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATC-GTTTTCATTTTTTGA
*
3460443 CTAGTGGTTTCAT-CTC
123 CTAGTGGTTTAATCCTC
* * * * * * * * *
3460459 AGTCGTTTTTATTTTCTGACTCGTGGTTTAATCCCTATCATTTTCAGTTTTAGACTCATGATTTA
1 A-TCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTA
* * * * * *
3460524 ATTTCAG-TCATTTTTATTTTCT-AACTCATGATTTAAT-TCCAATCGGTTTCATTTATTGACTA
65 A--TCCGTTCATTTTCATTTTTTGAA-TCATG-TTTAATCTCCGATCGTTTTCATTTTTTGACTA
*
3460586 GTGGTTTAATCCTG
126 GTGGTTTAATCCTC
* *
3460600 ATCATTTTCATTTTTTGACTCATGATTTAATTTCAATCATTTTTATTTCTTTGACTCATGATTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTT-TTTGACTCATGATTTA
* * ** *
3460665 ATGCCGTTCATTATCACTTTTTGAATCATCGTTTAAT-TGTGATCGTTTTCATTTTTTGACTTGT
65 AT-CCGTTCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGACTAGT
3460729 GGTTTAAT-CTC
128 GGTTTAATCCTC
* * ** * ** *
3460740 TATCTTTTTCACTTTTTGACTTGTGGTTTAATCTCTATTGTTTTATATTTTCTT-ACTCATGCTT
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTT-TATTTT-TTGACTCATGATT
* * * *
3460804 TAATCCCTGTCATTTTCATTTTTTGACA-CGTTGTTTAATC-CCTATCATTTTCATTTTTTGAC-
63 TAATCCGT-TCATTTTCATTTTTTGA-ATC-ATGTTTAATCTCCGATCGTTTTCATTTTTTGACT
*
3460866 ACGTTGTTTAATCC-C
125 A-GTGGTTTAATCCTC
* * * ** ** * ** * *
3460881 TGTCATTTTTATTTTTTGATTCATGATTTAATCTCGGTTGTTTTCATTTTTTGACTTGTGGTATA
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTA
** * * * * *
3460946 ATCCTAGTTGTTTTTCATTTTATGACTCATCGTTTAATC-CTGATCGCTTTCATTTTTTGCCTCA
65 ATCC--GTTCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGACT-A
* *
3461010 -TAGTTTAATCCTG
126 GTGGTTTAATCCTC
* ** * * * ** * * * * * * ** *
3461023 GTGGTTTTCATTTTCTCATTCA-GGGTTAGTC-CCAGTCGTTTTCATTTTCTAACTTGTGCTTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCTA-TCATTTTTATTTTTTGACTCATGATTTA
* * * ** *
3461086 ATTTTCG-TCATTTTCATTTTTTGATTTGTAATTTAAT-TCTGGTAATTTTCATTATCATTTTCA
65 A--TCCGTTCATTTTCA---TTT--TTTG-AA--TCATGT-T--TAA-TCTC-CGATCGTTTTCA
* * *
3461149 TTTTCTAACTCGTGGTTTAAT-CTC
115 TTTTTTGACTAGTGGTTTAATCCTC
** * * * * * **
3461173 GATGGTTTTCATTTTTTGATTTATGATTTAAT-TTTGATCATTTTTATTTCTCTGGCTTGTGATT
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTTATTT-TTTGACTCATGATT
* * * * * * *
3461237 TCATACCGATCATTTTCATTTTTTGACTCATGATTTAATCT-TGATCGTTTTTATTTTTTAACCC
63 TAAT-CCGTTCATTTTCATTTTTTGAATCATG-TTTAATCTCCGATCGTTTTCATTTTTTGA-CT
* *
3461301 A-TTGTTTAATCCTA
125 AGTGGTTTAATCCTC
* * * * * * * *
3461315 ATCTTTTTCATTTTTTGACCCATGGTTTAATC-CCATTCATTTTCATTTTCTAACTCGTGATTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCTA-TCATTTTTATTTTTTGACTCATGATTTA
* * * * * * *
3461379 ATCCAAG-TCATTTTTATTTTCTGACTCAAGGTTTAATCT-CAATCGTTTTTATTTTTTGACTCG
65 ATCC--GTTCATTTTCATTTTTTGAATC-ATGTTTAATCTCCGATCGTTTTCATTTTTTGACTAG
* * *
3461442 TGATTTAATCTTG
127 TGGTTTAATCCTC
* * * * * *
3461455 GTCATTTTCATTTTCTGACT--TGTAGTTTAAT-TCCCATCGTTTTCATTTTCTGACTCATGATT
1 ATCATTTTCATTTTTTGACTCATG-A-TTTAATCT-CTATCATTTTTATTTTTTGACTCATGATT
* * * * * * * *
3461517 TAATTCTGGTCATTTTTATTTCTCTGAGTCATGGTTTAGTC-CCTG-TTGTCTTCATTTTTTGAC
63 TAA-TCCGTTCATTTTCATTT-TTTGAATCAT-GTTTAATCTCC-GATCGTTTTCATTTTTTGAC
* *
3461580 TCGTGCTTTAATCC-C
124 TAGTGGTTTAATCCTC
* ** ** * * * * * *
3461595 GATCATTTTTCATTTTTTGATTGGTGCCTTCATCTC-GTCATTTTTGTTCTCTGACTCATGGTTT
1 -ATCA-TTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTT
* * * * * * * **
3461659 AATCCTTGTCATTTTGATTTTTTGACTCGTGGTTTAATCT-CGATCATTTTTAGTTTTAAACTTA
64 AATCCGT-TCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGAC-TA
* ** *
3461723 -TGATTTAATTTTG
126 GTGGTTTAATCCTC
* ** * * * *
3461736 ATCATTTTTATTTTTTGACTTGTAATTTAAT-TATGATCATTTTTGTTTCTTGACT-AGTCG-TT
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTTATTTTTTGACTCA-T-GATT
* * * * ** * * * * * *
3461798 TAATCCCGATCATTTTGA--TTCTGACTTGTGATTTGAT-TTCAATCATTTTTATTTCATTGACT
63 TAAT-CCGTTCATTTTCATTTTTTGAATCATG-TTTAATCTCCGATCGTTTTCATTT-TTTGACT
* *
3461860 CA-TGATTTAAT-GTC
125 -AGTGGTTTAATCCTC
* * * ** *
3461874 AGTTATTTTTATTTTTTGACTTATCTTTTAAT-TCTGATC-TTTTTCATTTTTTGACTCATGGTT
1 A-TCATTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTT-ATTTTTTGACTCATGATT
* * * * * * * *
3461937 TAATCTCGGTCATTTCCAATTTTTGACTTGC-TATTTAATC-CCTATTGTTTTACATTTTTTGGC
63 TAATC-CGTTCATTTTCATTTTTTGA-AT-CATGTTTAATCTCCGATCGTTTT-CATTTTTTGAC
* *
3462000 TTGTGCTTTAATCC-C
124 TAGTGGTTTAATCCTC
* ** * * *
3462015 TATCATTTTCATTTTTTGATGTGTTG-TTTAATCCCTAT-ATTTTTATTTTTTGACTCCTGTTTT
1 -ATCATTTTCATTTTTTGA-CTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTT
* * * * * *
3462078 AATCTCGATCATTTTCTTTTTTTGACTCATGGTATAATC-CCTG-TCATTTTTCATTTTTGGACT
64 AATC-CGTTCATTTTCATTTTTTGAATCAT-GTTTAATCTCC-GATC-GTTTTCATTTTTTGACT
* *
3462141 CA-TTGTTTAATCCTA
125 -AGTGGTTTAATCCTC
*** * ** * * * *
3462156 ATTGCTTTCATTTTTTGACTCATGGTTTAATC-CTAGTGGTTTTCATTTTTTAACTCATGTTTTG
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCTA-TCATTTTTATTTTTTGACTCATGATTTA
* * * * * * * * * * *
3462220 ATCTTGGTCATTTTCATTTTTTGATTCGTAATTTAAT-TCTGGTCATTTTTATTTCTCTGACTTG
65 ATC-CGTTCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTT-TTTGACTAG
3462284 TGGTTTAATCCTC
127 TGGTTTAATCCTC
* ** * ** * *
3462297 GTTGTCTTCATTTTTTGACTTGTGGTTTAA-CCCTGATCATTTTTCATTTTTTGACT-A-GTAGT
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTT-ATTTTTTGACTCATG-A-T
* * ** *
3462359 TTCAT-CTTAGTCATTTTCATTTTTT-AACTTGTGGTTTAATC-CCTATCGTTTTCATTTTTTGA
62 TTAATCCGT--TCATTTTCATTTTTTGAA-TCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGA
* *
3462421 CTAATAGTTTAATCCT-
123 CTAGTGGTTTAATCCTC
* * * *
3462437 AGTCATTTTTAGTTTTAGACTCATGATTTAATTTC-AGTCATTTTTATTTTTTGACTCATGATTT
1 A-TCATTTTCATTTTTTGACTCATGATTTAATCTCTA-TCATTTTTATTTTTTGACTCATGATTT
** ** * * * * * *
3462501 AATTTTGGTTGGTTTT-ATTTCTTGACT-AGTGGTTTAGTCT-TGGTCATTTTCATTTTTTGACT
64 AA--TCCGTTCATTTTCATTTTTTGAATCA-T-GTTTAATCTCCGATCGTTTTCATTTTTTGACT
* * * ** *
3462563 CGTGATTTGATTTTG
125 AGTGGTTTAATCCTC
* * * ** * * *
3462578 GTCATTTTTATTTCTTTGACTCGTGATTTAATGC-CGGTTATTTTCT-TTTTTTGAATCATCATT
1 ATCATTTTCATTT-TTTGACTCATGATTTAAT-CTCTATCATTTT-TATTTTTTGACTCATGATT
* * * * * * * * *
3462641 TAATTC-TAGTCGTTTTAATTTTTTGACTCGTGGTTTAATCT-CTATCATTGTCATTTTTTTACT
63 TAATCCGT--TCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGAC-
* *
3462704 TA-TAGTTTAATCCTT
124 TAGTGGTTTAATCCTC
** * * * * * *
3462719 ATTGTTTTACATTTTTTGACTTATGCTTTAGTCCCTGTCATTTTCATTTTTTGACGT-ATTG-TT
1 ATCATTTT-CATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGAC-TCA-TGATT
* * ** * * * *
3462782 TAATCCTTGTCA--TT--TTTTTT-AGTTGTGATTAATCTCAG-TTGTTTTCATTTTTTGACTTG
63 TAATCCGT-TCATTTTCATTTTTTGAATCATGTTTAATCTCCGATCGTTTTCATTTTTTGACTAG
* *
3462841 TCGTATAATCC-C
127 TGGTTTAATCCTC
* * * * * *
3462853 AATCATTTTTCATTTTCTGACTCATCATTTAATCTCGATCACTTTCATTTTTTTGACTCATGTTT
1 -ATCA-TTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTA-TTTTTTGACTCATGATT
* ** * * * * * * * * *
3462918 TAATCCTGGTGGTTTTCATTTTCTCATTTAAGGATTAATCTCAG-TCATTTTCATTTTTTGACTC
63 TAATCC-GTTCATTTTCATTTTTTGA-ATCATGTTTAATCTCCGATCGTTTTCATTTTTTGACTA
* * *
3462982 GTGCTTTAAT-TTT
126 GTGGTTTAATCCTC
* * * * * *
3462995 AGTCGTTTTCA-TTTTTAACTC--GCATTTTAATCTCGATCA-TTTCATTTTTTGACTCGTAATT
1 A-TCATTTTCATTTTTTGACTCATG-A-TTTAATCTCTATCATTTTTATTTTTTGACTCATGATT
* *
3463056 TAATTCCAGTAATTGTCATTATCATTTCCATTTTTTGACTCATGGTTTAATCT-CGATCATTTTC
63 TAA-TCC-G----T-TC---AT--TTT-CATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTC
* * * * ** *
3463120 ATTTTCTAACTTGTGATTTAATTTTG
114 ATTTTTTGACTAGTGGTTTAATCCTC
* * ** * * * *
3463146 ATCATTTTTATTTCTCTGACTTGTGATTTAATAC-CGATCGTTTTCATTTTCTGACTCATGATTT
1 ATCATTTTCATTT-TTTGACTCATGATTTAAT-CTCTATCATTTTTATTTTTTGACTCATGATTT
* * * * * * * * *
3463210 AATCTTAGTT-TTTTTCATTTTTTGACTCGTGGTTTAAT-TCCCATTGTTTTTATTTTCTGACTT
64 AATC--CGTTCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGACTA
* * *
3463273 GTGATTTAATTCTG
126 GTGGTTTAATCCTC
* * * * *
3463287 GTCATTTTTATTTCTCTGACTCAT-ACTTTAATC-C-AT-GTTGTCTTCATTTTTTGACTCATGG
1 ATCATTTTCATTT-TTTGACTCATGA-TTTAATCTCTATCATT-T-TT-ATTTTTTGACTCATGA
* * * ** * * *
3463348 TTTAATCCTGATCGTTTTTCATTTTCT-AACTGGTGGTTTTATCT--TATTCGTTTTCATTCTTT
61 TTTAATCC-GTTC-ATTTTCATTTTTTGAA-TCAT-GTTTAATCTCCGA-TCGTTTTCATTTTTT
*
3463410 GACTCA-TGGTTTAAACC-C
121 GACT-AGTGGTTTAATCCTC
** * * * * * * * * * * * * **
3463428 TATTGTTTTAATTTTCTAACACGTGGTTTAATCTTTGTCGTTTTCAGTTTTAGACTTGTGATTTA
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTA
** * * * ** * * * * *
3463493 ATTTTGGTCATTTTTATTTTTTTAACTTGTGATTTAAT-TTCAATCATTTTTATTTTCTGACTTA
65 A-TCCGTTCATTTTCATTTTTTGAA-TCATG-TTTAATCTCCGATCGTTTTCATTTTTTGAC-TA
* *
3463557 -TGATTTAAT-TTC
126 GTGGTTTAATCCTC
* * * * *
3463569 GATCATTTTCATTTCTTGAGT-AGTG-TTTAATCTC-AGTCATTTTCATTTTCTGACTCGTGATT
1 -ATCATTTTCATTTTTTGACTCA-TGATTTAATCTCTA-TCATTTTTATTTTTTGACTCATGATT
* * * * ** * ** * *
3463631 TGATTCTGATCACTTTT-ATTTCTTTGACTTGTGATTTAATGTAAG-TCATTTTCAATTTTTGAC
63 T-AATCCGTTCA-TTTTCATTT-TTTGAATCATG-TTTAATCTCCGATCGTTTTCATTTTTTGAC
** ** *
3463694 TCTTCATTTAAT-TTC
124 TAGTGGTTTAATCCTC
* * * * * * * * ** *
3463709 AATCATTTTCATTCTCTGACTCATGGTTTGATCTCAATCATTTTCACTTTTTAACTTGTGGTTTA
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTA
* * * * *
3463774 ATCC-TTCTTGTTTAACTTTTTTGACTCATGCTTTAATCCCCG-TCATTTTTC-TTTTTTGACTC
65 ATCCGTTCAT-TTTCA-TTTTTTGAATCATG-TTTAATCTCCGATC-GTTTTCATTTTTTGACT-
* *
3463836 A-TGATTTAATCAC-G
125 AGTGGTTTAATC-CTC
* * * * * ** *
3463850 GTCATTTTCATTTTTTGACTCATGGTATAATC-CTGGTCATTTTTCATTGTTTGACTTGTCATTT
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTT-ATTTTTTGACTCATGATTT
* * * * * * * * *
3463914 AATCTTGATCGCTTTT-ATTTTTTGACTCATGGTTTAATCT-TGGTAGTTTTCATTTTCTCACCT
64 AATC-CGTTC-ATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGA-CT
*
3463977 AG-GGTTTAGTCCT-
125 AGTGGTTTAATCCTC
** * * * * * *
3463990 AGTCATTTTTGGTTTTCTGACTCGTGCTTTAAT-TATGATCATTTTCATTTTTTGACTCATAATT
1 A-TCA-TTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTTATTTTTTGACTCATGATT
** * * * * * **
3464054 TAATTTTGATAATTTTTTAATTATCATTTTTGTTTTCTTACTCATGGTTTAATCT-CAATTATTT
63 TAA-TCCG--------TTCATTTTCA----T-TTTT-TGAATCAT-GTTTAATCTCCGATCGTTT
* *
3464118 TCATTTTTTGACTCA-TGATTTAAT-TTC
112 TCATTTTTTGACT-AGTGGTTTAATCCTC
* * * ** * * * * * *
3464145 GATCATTTTTATTTCTCTGGCTTGTGATTTAATACT-GATCGTTTTCATTTTCTAACTCATAATT
1 -ATCATTTTCATTT-TTTGACTCATGATTTAAT-CTCTATCATTTTTATTTTTTGACTCATGATT
* * * * * * *
3464209 TAATCTCAG-TCATTTTTATTTTCTAAACCATGGTTTAATCT-CGATTGTTTTCATTTTCTAACC
63 TAATC-C-GTTCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGA-C
* * *
3464272 CA-TGGTTTAATTCTG
124 TAGTGGTTTAATCCTC
* * *** ** *
3464287 ATCATTTTCATTTTCTGACTCATGATTTAATATGGGTCATTTTTATTTTTTGACTTGTGGTTTAA
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTAA
* * * * * * *
3464352 TCCTGAT-AGTTTTTATTTTTTGACTCGTGATTTAATC-CCTATCATTTTCATTTTCTGACTCA-
66 TCC-GTTCA-TTTTCATTTTTTGAATCATG-TTTAATCTCCGATCGTTTTCATTTTTTGACT-AG
3464414 TGGTTTAATTCC-C
127 TGGTTTAA-TCCTC
* * * * * *
3464427 ATCATTTTCATTTTTTAACTCGTGATTTAAT-TTTGGTCATTTTTATTTCTCTGACTCATGGTTT
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTTATTT-TTTGACTCATGATTT
* * * * * *
3464491 AATCCCCGTT-GTCTTCATTTTCTGACTCATGATTTAATCT-CAATTGTTTTTCATTTTTTGACT
64 AAT--CCGTTCATTTTCATTTTTTGAATCATG-TTTAATCTCCGATCG-TTTTCATTTTTTGACT
*
3464554 AGTGGTTTCAT-CTC
125 AGTGGTTTAATCCTC
* * * * * * *
3464568 TATCATTTTCATTCTCTGACTCATGGTTTAATCCCTATCCTTTTAATTTTCTGACTCATGATTTA
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTA
* * * * * ** * * ** * * * * *
3464633 ATCCTGATCGTTTTTAGTTTTAGGCTCGTGATTT-ATTTTTGGTCATTTTTATTTTTTGATTCGT
65 ATCC-GTTCATTTTCATTTTTTGAATCATG-TTTAATCTCCGATCGTTTTCATTTTTTGACTAGT
* * *
3464697 GATTTAAT-TTAG
128 GGTTTAATCCT-C
** * * * ** * * * * *
3464709 ATCATTTTCATTTCCTGCCT-AGTGGTTTAATCCCGGTTATTTTCATTTTCTAACTCGTGATTTG
1 ATCATTTTCATTTTTTGACTCA-TGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTT-
* * * * * *
3464773 ATTCC-TGTCATTTTTATTTCTTTGACTCGTGATTTAAT-ACC-AGTCATTTTCATTTTTTGACT
64 AATCCGT-TCATTTTCATTT-TTTGAATCATG-TTTAATCTCCGA-TCGTTTTCATTTTTTGACT
* ** *
3464835 TGTCATTTAAT-TTC
125 AGTGGTTTAATCCTC
* ** * * * ** * * ** *
3464849 GGTTGTTTTCATTTTCTAACTCATGGTTTAATCTCGGTCA-TTTCACTTTTTGACTTGTGGTTTA
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTA
* * ** * * * *
3464913 ATCTTTGTT-GTTTTACA-TTTTCCAACTCGTGCTTTAATC-CTTG-TTGTTTTCATTTTCTGA-
65 ATC--CGTTCATTTT-CATTTTTTGAA-TCATG-TTTAATCTC-CGATCGTTTTCATTTTTTGAC
**
3464973 T-GCATTATTT-ATCC-C
124 TAG--TGGTTTAATCCTC
* * * * *
3464988 TGTCATTTTTATTTTTTGACTCATGATTTAATC-CCAGTCATTTTTATTTTTTGACTCATGGTAT
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCTA-TCATTTTTATTTTTTGACTCATGATTT
* * * * * * * * * * *
3465052 AATCCCGATCATTTTTCATTTTCTGACTTATCATTTAATCT-TGATCGCTTTAATTTTCTAACTC
64 AAT-CCGTTCA-TTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGACTA
*
3465116 GTGGTTTAATCCTG
126 GTGGTTTAATCCTC
* ** * ** * * * * * *
3465130 GTGGTTTTCATTTTTTCACTCGGGGTTTAGTCCCTATCATTTTCATTTTTTGACTCGTGCTTTAA
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTAA
* * * * * * *
3465195 TTCTGGTCATTTTCATTTTTT-AACTCGTGTTTTAATCT-GGATCCTTTTCATTTTCTAATTCAT
66 -TCCGTTCATTTTCATTTTTTGAA-TCATG-TTTAATCTCCGATCGTTTTCATTTTTTGA--C-T
* ** * *
3465258 AATTTAATTTTGATAATTTTCATT
125 -A-GT--GGTT--TAA---TCCTC
** * * * * * * * *
3465282 ATCATTTTTGTTTTCTGACTCGTGGTTTAATCTCGATCATTTTCATTTTCTAACTCGTGATTTAA
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTAA
** * * * ** ** * ** *
3465347 TTTTGATGATTTTTATTTCTTTGGCTTGTGATTTAATAT-AAATCATTTAT-ATTTTTTGACTCA
66 -TCCGTTCATTTTCATTT-TTTGAATCATG-TTTAATCTCCGATCGTTT-TCATTTTTTGACT-A
* * *
3465410 -TGATTTAATCTTG
126 GTGGTTTAATCCTC
* * * * ** * * * * *
3465423 GTCATTTTCATTTTTTAAC-CTATGGTTTAATCCCGGTCATTTTAATTTTCTAACCCATGGTTTA
1 ATCATTTTCATTTTTTGACTC-ATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTA
* * * * * * * *
3465487 ATCCCGATCATTTTCATTTTTTGACTCGTGATTTAATCT-AGGTCATTTTTATTTTCTGACTCA-
65 AT-CCGTTCATTTTCATTTTTTGAATCATG-TTTAATCTCCGATCGTTTTCATTTTTTGACT-AG
3465550 TGGTTTAATCC-C
127 TGGTTTAATCCTC
* * * * * * **
3465562 AGTCATTTTTATTTTTTGACTCATGGTTTAAT-TCCCATTATTTTCATTTTCTGACTTGTGATTT
1 A-TCATTTTCATTTTTTGACTCATGATTTAATCT-CTATCATTTTTATTTTTTGACTCATGATTT
** * * * * * * ** * * *
3465626 AATTTTGGTCATTTTTATTTCTCTGACTCATGCTTTAGT-TCCCATTATCTTCATTTTCTGACTC
64 AA-TCCGTTCATTTTCATTT-TTTGAATCATG-TTTAATCTCCGATCGTTTTCATTTTTTGACTA
*
3465690 GTGGTTTAATCCTG
126 GTGGTTTAATCCTC
* ** ** * * * *
3465704 ATCGTTTTTCATTTTTTGACTGGTGGCTTCATCT-TGGTCATTTTTATTCTTTGACTCATGGTTT
1 ATC-ATTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTTATTTTTTGACTCATGATTT
* * * * * * * * * *
3465768 AATCCCTATCGTTTTAATTTTTTTACTCATGGTTTAATCT-CGATCATTTTTAGTTTTAGACTCG
64 AATCCGT-TCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGACTAG
** ** *
3465832 TAATTTAATTTTG
127 TGGTTTAATCCTC
* * * * * *
3465845 GTCATTTTTATTTTCTAACTCATGATTTAAT-TCTGATCATTTTCATTTCTTT-ACT-AGTGGTT
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTTATTT-TTTGACTCA-TGATT
* * * * * * * ** * * *
3465907 TAATCCTGATCATTTTTATTTTCTAGACTCGTGATTTGATTTAAG-TCATTTTTATTCCTTTGAC
63 TAATCC-GTTCATTTTCATTTT-TTGAATCATG-TTTAATCTCCGATCGTTTTCATT-TTTTGAC
* ** *
3465971 TCGTCATTTAATGCCGC
124 TAGTGGTTTAAT-CCTC
* * * * *
3465988 -TCATTGTCA-TTTTTGACTCGTGGTTTAAT-TCCAATCATTTTCATTTTTTGACTCATGATTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATCT-CTATCATTTTTATTTTTTGACTCATGATTTA
* * * * * * * * *
3466050 ATCTTGGTCATTTTC-TCGTTTTGACTTAGGTTTAAGCCCCGA-CGTTTTACATTTTTTGACTCG
65 ATC-CGTTCATTTTCAT-TTTTTGAATCATGTTTAATCTCCGATCGTTTT-CATTTTTTGACTAG
*
3466113 TGCTTTAATCC-C
127 TGGTTTAATCCTC
* ** * *
3466125 TATCGTTTTCA--TTTT---TCA--A-TGCA--T-TGTC-TTTTTATTTTTTGACTCGTGATTTA
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTA
* * * *
3466178 ATCCCAG-TCATTTTCATTTTTTGACTCATTATTTAATC-CCTATCGCTTTCATTTTTTGACTCA
65 AT-CC-GTTCATTTTCATTTTTTGAATCA-TGTTTAATCTCCGATCGTTTTCATTTTTTGACT-A
*
3466241 -TGGTTTAATCCTG
126 GTGGTTTAATCCTC
* * * * * * * * * * * * * *
3466254 GTGGATTTT-ATTTTCTCACTCAGGGTTCT-GTC-CTAGTCGTTATCATTTTCTAACTCGTGCTT
1 AT-CATTTTCATTTTTTGACTCATGATT-TAATCTCTA-TCATTTTTATTTTTTGACTCATGATT
** * * * * * *
3466316 TAATTTTGGTGATTTTCATTTTTT-AACTCATGTTTTGATC-CCGAACATTTTCATTTTCTGACT
63 TAA-TCCGTTCATTTTCATTTTTTGAA-TCATG-TTTAATCTCCGATCGTTTTCATTTTTTGACT
** ** *
3466379 CA-TAATTTAATTTTG
125 -AGTGGTTTAATCCTC
* * * *
3466394 ATAATTTTCATTATCGTTTTTATTTTCTGACTCATGGTCTAATCT-TGATCATTTTCATTTTTTG
1 ATCATTTTC---A-------T-TTTT-TGACTCATGATTTAATCTCT-ATCATTTTTATTTTTTG
* * * * * ** ** * * *
3466458 ACTCATGATTTAATTTCGATCATTTTTAATTCTCTGGCTTGTGATTTAAT-ACGGATCGTTTCCA
53 ACTCATGATTTAA-TCCGTTCA-TTTTCATTTTTTGAATCATG-TTTAATCTCCGATCGTTTTCA
* * *
3466522 TTTTTTAACTCGTGATTTAAT-CTC
115 TTTTTTGACTAGTGGTTTAATCCTC
** * * * * * * *
3466546 AGTTGTTTTCATTTTCT-AGCCCATGGTTT-ATCT-TGATCATTTTCATTTTCTGACCCATGGTT
1 A-TCATTTTCATTTTTTGA-CTCATGATTTAATCTCT-ATCATTTTTATTTTTTGACTCATGATT
* * * * * * *
3466608 TAATCTCGGTCGTTTTCATTTTTTGACTCATGATTTAGTC-CCAATCATTTTCATTTTTTCACTC
63 TAATC-CGTTCATTTTCATTTTTTGAATCATG-TTTAATCTCCGATCGTTTTCATTTTTTGACT-
* *
3466672 A-TGATTTAATTCT-
125 AGTGGTTTAATCCTC
* * * * *
3466685 AGTCTTTTTTATTTCTCTGACTCATGGTTTAATC-C--TCGTTGTCTTCATTTTTTGACTCAT-A
1 A-TCATTTTCATTT-TTTGACTCATGATTTAATCTCTATCATT-T-TT-ATTTTTTGACTCATGA
* * * * ** * *
3466746 GTTTAATCCTGGTCATTTTTCATTTTCTGACT-AGTGGTTTCATCTAAG-TCATTTTCATTTTCT
61 -TTTAATCC-GTTCA-TTTTCATTTTTTGAATCA-T-GTTTAATCTCCGATCGTTTTCATTTTTT
* *
3466809 AACTCA-TGGTTTAAT-CTGT
121 GACT-AGTGGTTTAATCCT-C
* * * * * **
3466828 ATCGTTTTAATTTTTTGACTCATGGTTTAATCCTGCT-T-GTTTTTAGTTTTAAACTCATGATTT
1 ATCATTTTCATTTTTTGACTCATGATTTAAT-CT-CTATCATTTTTATTTTTTGACTCATGATTT
*** * * * * * *
3466891 AATTTAAATT-ATTTTTATTTTCTGACT-ACTGATTTAAT-TCTGATCGGTTTCATTTCTTGACT
64 AA--TCCGTTCATTTTCATTTTTTGAATCA-TG-TTTAATCTCCGATCGTTTTCATTTTTTGACT
* *
3466953 AGTTGTTTAAT-CTT
125 AGTGGTTTAATCCTC
* * * * * *
3466967 AGTCACTTTCATTTTCTGACCCATGATTTGAT-TTTGATTATTTTTATTTCTTTGACTCATGATT
1 A-TCATTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTTATTT-TTTGACTCATGATT
* * * * ** ** ** * * *
3467031 TAATACCGATCGTTTTTA-TTTTTGACTTGTGATTTAATCT-TTATTATTTTCACTTTTTAACTT
63 TAAT-CCGTTCATTTTCATTTTTTGAATCATG-TTTAATCTCCGATCGTTTTCATTTTTTGACTA
* *
3467094 GTGGATTAATCCCC
126 GTGGTTTAATCCTC
** ** * * * * *
3467108 ATTGTTTTACATTTTTTGACTTTTGCTTTAATCTCTGTCATTTTCATTTTTTGACGCGTTG-TTT
1 ATCATTTT-CATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTC-ATGATTT
* * * * * * * *
3467172 GATCCCTTTGATTTTTATTTTTTGACTCGTGATTTAATCT-CGATTGTTTTCATTTTTTGACTTG
64 AAT-CCGTTCATTTTCATTTTTTGAATCATG-TTTAATCTCCGATCGTTTTCATTTTTTGACTAG
*
3467236 TGGTATAATCCT-
127 TGGTTTAATCCTC
* ** * *
3467248 AGTCTTTTTTCATTTTTTGACTCATCG-TTTAATC-CTAATCGCTTTTATTTTTTGACTCGTGGT
1 A-TC-ATTTTCATTTTTTGACTCAT-GATTTAATCTCT-ATCATTTTTATTTTTTGACTCATGAT
* * * * * * * * *
3467311 TTAAT-C-TTGGCGGTTTTC-TTTTTCTCATTAAGGGGTTAGTC-CC-AGTCATTTTCATTTTCT
62 TTAATCCGTT--C-ATTTTCATTTTT-TGAATCA-TGTTTAATCTCCGA-TCGTTTTCATTTTTT
* * ** ** *
3467371 AACTTGTACTTTAATTTTG
121 GACTAGTGGTTTAATCCTC
* * * * * * * *
3467390 GTCATTTTCATTTTCTGACTAGTAATTTAATTTTGATAATTTTCATTATCATTTTCATTTTCTAA
1 ATCATTTTCATTTTTTGAC---TCA--TGA--TT--TAA-TCTC--TATCATTTTTATTTTTTGA
* * * ** * * *** * *
3467455 CTCGTGGTTTTAATCTCGATGGTTTTCATTTTTTGACTCGTGATTTAAT-TTTAATCATTTTTAT
54 CTCAT-GATTTAATC-CGTTCATTTTCATTTTTTGAATCATG-TTTAATCTCCGATCGTTTTCAT
* * * *
3467519 TTCTCT-AGCTTGTGATTTAAT-ATC
116 TT-TTTGA-CTAGTGGTTTAATCCTC
* * * * * *
3467543 GATCATTTTCATTTTCTGACTCGTGATTTAATCTCGGT-TAATTTCT-TTTTTTAAC-CTATGGT
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTC--TATCATTTTTATTTTTTGACTC-ATGAT
* * ** * *
3467605 TTAATCCTGATCATTTTCATTTTTTGACTCGA-GCTTTTAATCTTAG-TCTTTTTTATTTTTTGA
62 TTAATCC-GTTCATTTTCATTTTTTGAATC-ATG--TTTAATCTCCGATCGTTTTCATTTTTTGA
*
3467668 CTCA-TGATTTAAT-CTC
123 CT-AGTGGTTTAATCCTC
* * * * * * *
3467684 GATCGTTTTTATTTTCTGGCTCGTGGTTTAAT-TC--CCATTGATTTCATTTTTTGACTCATGAT
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATT--TTT-ATTTTTTGACTCATGAT
* * * * * * * *
3467746 TTAATTCTAGTT-ATTTTTATTTCTTTGAGTCATGGTTCAATC-CCTG-TTGTTTTCATTGTCTA
62 TTAA-TC-CGTTCATTTTCATTT-TTTGAATCAT-GTTTAATCTCC-GATCGTTTTCATTTTTTG
**
3467808 ACTCA-CAGTTTAATCC-C
122 ACT-AGTGGTTTAATCCTC
** ** * * * ** * * *
3467825 AATTGTTTTTCATTTTTTGACTGGTGGTTTCATCTC-AGTCATTTTCATCCTCTAACTCATAATT
1 -A-TCATTTTCATTTTTTGACTCATGATTTAATCTCTA-TCATTTTTATTTTTTGACTCATGATT
* * * * * *
3467889 CAATACC-TGTCATTTTCATTTTTTGACTCATGGTTTAATCT-TGATTGTTTTCAATTTTAGACT
63 TAAT-CCGT-TCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGACT
* * *
3467952 TGTGATTTAAT-TTC
125 AGTGGTTTAATCCTC
* * * * * * *
3467966 GGTCATTTTTATTTTTCTGACTCATGATTTAAT-TTTGGTCATTTTCATTTCTTGACT-AGTGGT
1 -ATCATTTTCATTTTT-TGACTCATGATTTAATCTCT-ATCATTTTTATTTTTTGACTCA-TGAT
* * * * * *
3468029 TTAATCTAGGTCATTTTCATTTTTTGACTCATCGTTGAATC-CTGGTCGTTTTCATTTTTTGACT
62 TTAATC-CGTTCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGAC-
*
3468093 TA-AGGTTTAAT-CTC
124 TAGTGGTTTAATCCTC
* * * * * ** * * * *
3468107 GGTCATTGTCACTTTTTGACTTATGGTTTAATC-CTTATTGTTTTACATTTTCTAACTCATGCTT
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTC-TATCATTTT-TATTTTTTGACTCATGATT
* * * * *
3468171 TAATCCCTGTCATTTTCATTTTCTGACA-CATTGTTTAATC-CTTG-TCATTTTTATTTTTTGAC
63 TAATCCGT-TCATTTTCATTTTTTGA-ATCA-TGTTTAATCTC-CGATCGTTTTCATTTTTTGAC
*
3468233 TCA-TGTTTTAAT-CTC
124 T-AGTGGTTTAATCCTC
* * * * * * * *
3468248 GGTCATTTTTATTTTTTGACTCATGGTTTAAACCCTATCATTTTTCATTTTCTGAGTCATCATTT
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTT-ATTTTTTGACTCATGATTT
* ** * * * * * * * *
3468313 AATCCCGATCGCTTTCATTTTCTGACTCATGGTTTAATCT-TGGTGGTTTTCGTTTTCTCACTTA
64 AAT-CCGTTCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGAC-TA
*
3468377 G-GGTTTAGTCC-C
126 GTGGTTTAATCCTC
* * * ** * * * * * * *
3468389 AATCATTGTCATTTTCTAACTTGTGCTTTAAT-TCCAATCA-CTTTAATTTTTAACTCACGTTTT
1 -ATCATTTTCATTTTTTGACTCATGATTTAATCT-CTATCATTTTTATTTTTTGACTCATGATTT
* * * * * * ** **
3468452 GATCTCGGTCACTTTGATTTTCTGACTTGTAATTTAAT-TATGGTAATTTTCATTATTTTTTTCA
64 AATC-CGTTCATTTTCA-TTT-T---TTG-AA--TCATGT-T--TAA-TCTC-CGATCGTTTTCA
* *
3468516 TTTTCTGACTTGTGGTTTAAT-CTC
115 TTTTTTGACTAGTGGTTTAATCCTC
* * * * * * * **
3468540 TAT-AGTTTTTATTTTTTGACTCGTGATTTACTTTCGATCATTTTTATTTCTCTGGCTTGTGATT
1 -ATCA-TTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTT-TTTGACTCATGATT
* * * * * **
3468604 TAATATCGAT-AGTTTTCATTTTTT-AACTCGTGATTTAATCT-C-AACTATTTTCATTTTCTAA
63 TAAT-CCGTTCA-TTTTCATTTTTTGAA-TCATG-TTTAATCTCCGATC-GTTTTCATTTT-TTG
* *
3468665 ACCA-TGGTTTAATCCTA
122 ACTAGTGGTTTAATCCTC
* * * * * * **
3468682 ATGATTTTCATTTTCTAACCCATGGTTTAATC-CTGATCATTTTCATTTTTTGACTTGTGATTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCT-ATCATTTTTATTTTTTGACTCATGATTTA
* * * * ** * * *
3468746 ATCCAAG-TCATTTTTATTTTCTGACTCGAGGTTTAATCTTAG-TCTTTTTTATTTTTTTACTCA
65 ATCC--GTTCATTTTCATTTTTTGAATC-ATGTTTAATCTCCGATCGTTTTCATTTTTTGACT-A
*** * *
3468809 -CAATTTAATCTTG
126 GTGGTTTAATCCTC
* * * * * *
3468822 ATCGTTTTCATTTTTTGACTCATGGTTTAAT-TCCCATCAATTTCATTTTCTGACTCATGATTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATCT-CTATCATTTTTATTTTTTGACTCATGATTTA
* * * * * * * *
3468886 ATTCTAGTT-ATTTTTATTTCTCT-AAGTCATGGTTTAATC-CTG-TTGTCTTCATTTTCTAACT
65 A-TC-CGTTCATTTTCATTT-TTTGAA-TCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGACT
*
3468947 CGTGGTTTAATCC-C
125 AGTGGTTTAATCCTC
** * ** * * ** * * * *
3468961 GATTGTTTTTCATTTTTTGATTGGTGGTTTCATCTCGGTC-TTTTTCATTCTCTAACTCATGGTT
1 -A-TCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTT-ATTTTTTGACTCATGATT
* * * * * * * * *
3469025 TAATACC-TATCATTTTGATTTTTTGACTTATGGTTTAATCT-TGGTTGTTTTTAGTTTTAGACT
63 TAAT-CCGT-TCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGACT
* * ** *
3469088 TGTGATTTAATTTTG
125 AGTGGTTTAATCCTC
* * * * * *
3469103 GTCATTTTTATTTTTTTGACTCATGATTTAAT-TCTAGTCGTTTTCATTTCTTGACT-AGTGGTT
1 ATCATTTTCA-TTTTTTGACTCATGATTTAATCTCTA-TCATTTTTATTTTTTGACTCA-TGATT
* * * * **
3469166 TAATCCTGGTCATTTTCATTTTTTGACTTATCGTTGAATCT-CGATATTTTTCATTTTTTGAC-A
63 TAATCC-GTTCATTTTCATTTTTTGAATCAT-GTTTAATCTCCGATCGTTTTCATTTTTTGACTA
* * *
3469229 CGTGATTTAATCTTG
126 -GTGGTTTAATCCTC
* * ** * * ** * * * *
3469244 GTCATTTTCACTTTTTGACTTGTGGTTTAA-CCCTTATTGTTTTACATTTTCTAACTCATGCTTT
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTC-TATCATTTT-TATTTTTTGACTCATGATTT
* * ** *
3469308 AATCCCTATCATTTTCATTTTCTG-ATGCATTGTTTAATC-CTTATCACTTTT-ATTTTTTGACT
64 AATCCGT-TCATTTTCATTTTTTGAAT-CA-TGTTTAATCTCCGATC-GTTTTCATTTTTTGACT
* * *
3469370 CA-TGTTTTAATCTTG
125 -AGTGGTTTAATCCTC
* * * * * * ** *
3469385 GTCATTTTTATTTTTTAACTCATGGTATAATCCCTATTGTTTTTCATTTTTTAACTCATCG-TTT
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTT-ATTTTTTGACTCAT-GATTT
3469449 AATCC
64 AATCC
3469454 CGATCGCTTT
Statistics
Matches: 6842, Mismatches: 1753, Indels: 1362
0.69 0.18 0.14
Matches are distributed among these distances:
128 69 0.01
129 20 0.00
130 3 0.00
131 1 0.00
132 2 0.00
133 3 0.00
134 1 0.00
135 66 0.01
136 28 0.00
137 14 0.00
138 82 0.01
139 340 0.05
140 1882 0.28
141 2840 0.42
142 665 0.10
143 46 0.01
144 30 0.00
145 19 0.00
146 8 0.00
147 22 0.00
148 17 0.00
149 20 0.00
150 64 0.01
151 106 0.02
152 176 0.03
153 176 0.03
154 55 0.01
155 83 0.01
156 3 0.00
157 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (139 bp):
ATCATTTTCATTTTTTGACTCATGATTTAATCTCTATCATTTTTATTTTTTGACTCATGATTTAA
TCCGTTCATTTTCATTTTTTGAATCATGTTTAATCTCCGATCGTTTTCATTTTTTGACTAGTGGT
TTAATCCTC
Found at i:3460736 original size:106 final size:105
Alignment explanation
Indices: 3460042--3460725 Score: 362
Period size: 106 Copynumber: 6.5 Consensus size: 105
3460032 TCATTATCAT
* * * * * *
3460042 TTTCATTTTTTGACTCGTTGTTTAAT-CTCGATCATTTTCATTTTCTGACTCATGATTTAATTTT
1 TTTCATTTATTGAATAGTCGTTTAATCCT-GATCATTTTCATTTTTTGACTCATGATTTAATTTC
* ** ** * ** *
3460106 GATCATTTTTATTTCTCTAGTTTGTGATTTAATACTGATCGT
65 AATCATTTTTATTT-TCTAACTCATGATTTAATGCCAATCGA
* * * * * * * *
3460148 TTTCATTTTTTGACTCA-T-GATTTAAT-CTCAATCATTTTTATTTTCTAACCCATGGTTTAATC
1 TTTCATTTATTGAAT-AGTCG-TTTAATCCT-GATCATTTTCATTTTTTGACTCATGATTTAAT-
** * * * * * *
3460210 TT-GGTCATTTTCATTTTCTGACCCATGTTTTAAT-CTCAGTCGT
62 TTCAATCATTTTTATTTTCTAACTCATGATTTAATGC-CAATCGA
* * * * * *
3460253 TTTCATTTTTTGACTCGT-GATTTAATCCT-AGTCGTTTTCATTTTTTGACTCGTGATTTAATTC
1 TTTCATTTATTGAATAGTCG-TTTAATCCTGA-TCATTTTCATTTTTTGACTCATGATTTAATTT
* * * * **
3460316 CCATCATTTTCATTTTCTTACTCATGATTTAATTCTGATC-A
64 CAATCATTTTTATTTTCTAACTCATGATTTAATGCCAATCGA
* * * * ** *
3460357 TTTTTATTTCTCTGACTCA-TTGTTTAATCCCTG-TTGTCTTCATTTTTTGACTCAT-AGTTTAA
1 -TTTCATTTAT-TGAAT-AGTCGTTTAAT-CCTGATCATTTTCATTTTTTGACTCATGA-TTTAA
* * * * * *
3460419 TCTCGATCATTTTTCATTTTCTAACT-AGTGGTTTCAT-CTCAGTCGT
61 TTTCAATCATTTTT-ATTTTCTAACTCA-TGATTTAATGC-CAATCGA
* * * * * *
3460465 TTTTATTT-TCTGACTCGTGGTTTAATCCCT-ATCATTTTCAGTTTTAGACTCATGATTTAATTT
1 TTTCATTTAT-TGAATAGTCGTTTAAT-CCTGATCATTTTCATTTTTTGACTCATGATTTAATTT
* * *
3460528 CAGTCATTTTTATTTTCTAACTCATGATTTAATTCCAATCGG
64 CAATCATTTTTATTTTCTAACTCATGATTTAATGCCAATCGA
* *
3460570 TTTCATTTATTGACTAGTGGTTTAATCCTGATCATTTTCATTTTTTGACTCATGATTTAATTTCA
1 TTTCATTTATTGAATAGTCGTTTAATCCTGATCATTTTCATTTTTTGACTCATGATTTAATTTCA
* * **
3460635 ATCATTTTTATTTCTTTGACTCATGATTTAATGCCGTTC-A
66 ATCATTTTTATTT-TCTAACTCATGATTTAATGCCAATCGA
** *
3460675 TTATCACTTT-TTGAATCA-TCGTTTAATTGTGATCGTTTTCATTTTTTGACT
1 TT-TCA-TTTATTGAAT-AGTCGTTTAATCCTGATCATTTTCATTTTTTGACT
3460726 TGTGGTTTAA
Statistics
Matches: 464, Mismatches: 83, Indels: 62
0.76 0.14 0.10
Matches are distributed among these distances:
104 6 0.01
105 193 0.42
106 227 0.49
107 38 0.08
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.52
Consensus pattern (105 bp):
TTTCATTTATTGAATAGTCGTTTAATCCTGATCATTTTCATTTTTTGACTCATGATTTAATTTCA
ATCATTTTTATTTTCTAACTCATGATTTAATGCCAATCGA
Found at i:3460806 original size:106 final size:105
Alignment explanation
Indices: 3460147--3462939 Score: 410
Period size: 106 Copynumber: 26.4 Consensus size: 105
3460137 ATACTGATCG
* *** * * * * *** *
3460147 TTTTCATTTTTTGACTCATGATTTAATCTCAATCATTTTTATTTTCTAACCCATGGTTTAAT-CT
1 TTTTTATTTTTTGACTCATGATTTAATCTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATCCC
* * * * * *
3460211 TGGTCATTTTCA-TTTTCTGACCCATGTTTTAATCTC-AGTCG
66 T-ATCATTTTCACTTTT-TGACACGTGGTTTAATCCCTA-TCA
* * * * *
3460252 TTTTCATTTTTTGACTCGTGATTTAATCCT-AGTCGTTTTCATTTTTTGACTCGTGATTTAATTC
1 TTTTTATTTTTTGACTCATGATTTAAT-CTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAA-TC
* * * * *
3460316 CC-ATCATTTTCA-TTTTCTTACTCATGATTTAAT-TCTGATCA
64 CCTATCATTTTCACTTTT-TGACACGTGGTTTAATCCCT-ATCA
* ** * * ** *
3460357 TTTTTATTTCTCTGACTCATTG-TTTAATCCCTGTTGTCTTCATTTTTTGACTCATAGTTTAATC
1 TTTTTATTT-TTTGACTCA-TGATTTAATCTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATC
* * * * * *
3460421 TCGATCATTTTTCA-TTTTCTAACTA-GTGGTTTCATCTC-AGTCG
64 CCTATCA-TTTTCACTTTT-TGAC-ACGTGGTTTAATCCCTA-TCA
* * * ** * * * * ** * **
3460464 TTTTTATTTTCTGACTCGTGGTTTAATCCCTATCATTTTCAGTTTTAGACTCATGATTTAATTTC
1 TTTTTATTTTTTGACTCATGATTTAATCTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATCCC
* * * * * * * *
3460529 -AGTCATTTTTA-TTTTCTAACTCATGATTTAATTCCAATCG
66 TA-TCATTTTCACTTTT-TGACACGTGGTTTAATCCCTATCA
* * * * * * ** * *
3460569 GTTTCATTTATTGACT-AGTGGTTTAATCCTG-ATCATTTTCATTTTTTGACTCATGATTTAATT
1 TTTTTATTTTTTGACTCA-TGATTTAAT-CTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATC
* * * * * * * *
3460632 TCAATCATTTTTATTTCTTTGACTCATGATTTAATGCCGT-TCA
64 CCTATCATTTTCACTT-TTTGACACGTGGTTTAAT-CCCTATCA
* * * *
3460675 TTATCACTTTTTGAATCATCG-TTTAAT-TGTGATCGTTTTCATTTTTTGACTTGTGGTTTAATC
1 TTTTTATTTTTTGACTCAT-GATTTAATCTGTG-TCGTTTTCATTTTTTGACTTGTGGTTTAATC
* * ** * **
3460738 TCTATCTTTTTCACTTTTTGACTTGTGGTTTAATCTCTATTG
64 CCTATCATTTTCACTTTTTGACACGTGGTTTAATCCCTATCA
* ** * ** *
3460780 TTTTATATTTTCTT-ACTCATGCTTTAATCCCTGTCATTTTCATTTTTTGACACGTTGTTTAATC
1 TTTT-TATTTT-TTGACTCATGATTTAATCTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATC
* * *
3460844 CCTATCATTTTCATTTTTTGACACGTTGTTTAATCCCTGTCA
64 CCTATCATTTTCACTTTTTGACACGTGGTTTAATCCCTATCA
* * *
3460886 TTTTTATTTTTTGATTCATGATTTAATCTCG-GTTGTTTTCATTTTTTGACTTGTGGTATAAT-C
1 TTTTTATTTTTTGACTCATGATTTAATCT-GTGTCGTTTTCATTTTTTGACTTGTGGTTTAATCC
** * * * *
3460949 CTAGTTGTTTTTCA-TTTTATGACTCATCGTTTAAT-CCTGATCG
65 CTA--TCATTTTCACTTTT-TGACACGTGGTTTAATCCCT-ATCA
* * * * * * ** * *
3460992 CTTTCATTTTTTGCCTCAT-AGTTTAATCCTG-GTGGTTTTCATTTTCTCA-TTCAGGGTTAGTC
1 TTTTTATTTTTTGACTCATGA-TTTAAT-CTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATC
* * ** * ** *
3461054 CC-AGTCGTTTTCA-TTTTCTAACTTGTGCTTTAAT-TTTCGTCA
64 CCTA-TCATTTTCACTTTT-TGACACGTGGTTTAATCCCT-ATCA
* * ** * ** *
3461096 TTTTCATTTTTTGATTTGTAATTTAATTCTG-GTAATTTTCATTATCATTTTCATTTTCTAACTC
1 TTTTTATTTTTTGACTCATGATTTAA-TCTGTGTCGTTTTCA-T-T--TTTTGA----CT---T-
* * ** * **** * **
3461160 GTGGTTTAATCTCGATGGTTTTCATTTTTTGATTTATGATTTAAT-TTTGATCA
53 GTGGTTTAATCCCTATCATTTTCACTTTTTGACACGTGGTTTAATCCCT-ATCA
* * ** * * * * ** *
3461213 TTTTTATTTCTCTGGCTTGTGATTTCATACCG-ATCATTTTCATTTTTTGACTCATGATTTAAT-
1 TTTTTATTT-TTTGACTCATGATTTAAT-CTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATC
* * * * * * * *
3461276 CTTGATCGTTTTTATTTTTTAACCCATTGTTTAAT-CCTAATC-
64 CCT-ATCATTTTCACTTTTTGACACGTGGTTTAATCCCT-ATCA
* * ** * * * * *
3461318 TTTTTCATTTTTTGACCCATGGTTTAATCCCAT-TCATTTTCATTTTCTAACTCGTGATTTAAT-
1 TTTTT-ATTTTTTGACTCATGATTTAAT-CTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATC
* * * ** * * *
3461381 CCAAGTCATTTTTA-TTTTCTGACTCAAGGTTTAATCTCAATCG
64 CCTA-TCATTTTCACTTTT-TGACACGTGGTTTAATCCCTATCA
* * * *
3461424 TTTTTATTTTTTGACTCGTGATTTAATCT-TGGTCATTTTCATTTTCTGACTTGTAGTTTAATTC
1 TTTTTATTTTTTGACTCATGATTTAATCTGT-GTCGTTTTCATTTTTTGACTTGTGGTTTAA-TC
* * * * * *
3461488 CC-ATCGTTTTCA-TTTTCTGACTCATGATTTAAT-TCTGGTCA
64 CCTATCATTTTCACTTTT-TGACACGTGGTTTAATCCCT-ATCA
* * * * ** * * * *
3461529 TTTTTATTTCTCTGAGTCATGGTTTAGTCCCTGTTGTCTTCATTTTTTGACTCGTGCTTTAATCC
1 TTTTTATTT-TTTGACTCATGATTTAATCTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATCC
* * *** ** * * *
3461594 CGATCATTTTTCATTTTTTGATTGGTGCCTTCATCTC-GTCA
65 CTATCA-TTTTCACTTTTTGACACGTGGTTTAATCCCTATCA
* * * * * * * *
3461635 TTTTTGTTCTCTGACTCATGGTTTAATCCT-TGTCATTTTGATTTTTTGACTCGTGGTTTAATCT
1 TTTTTATTTTTTGACTCATGATTTAAT-CTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATCC
* * * ** *** * **
3461699 CGATCATTTTTAGTTTTAAACTTATGATTTAAT-TTTGATCA
65 CTATCATTTTCACTTTTTGACACGTGGTTTAATCCCT-ATCA
** * * * ** * * *
3461740 TTTTTATTTTTTGACTTGTAATTTAAT-TATGATCATTTTTGTTTCTTGACTAGTCGTTTAATCC
1 TTTTTATTTTTTGACTCATGATTTAATCTGTG-TCGTTTTCATTTTTTGACTTGTGGTTTAATCC
* * * ** * * ** *
3461804 CGATCATTTTGA--TTCTGACTTGTGATTTGATTTCAATCA
65 CTATCATTTTCACTTTTTGACACGTGGTTTAATCCCTATCA
* * ** ** * * ** *
3461843 TTTTTATTTCATTGACTCATGATTTAATGTCAGTTATTTTTATTTTTTGACTTATCTTTTAAT-T
1 TTTTTATTT-TTTGACTCATGATTTAATCTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATCC
* * * * * **
3461907 CTGATCTTTTTCATTTTTTGACTCATGGTTTAATCTCGGTCA
65 CT-ATCATTTTCACTTTTTGACACGTGGTTTAATCCCTATCA
** * ** * * * *
3461949 TTTCCAATTTTTGACT--TGCTATTTAATCCCTATTGTTTTACATTTTTTGGCTTGTGCTTTAAT
1 TTTTTATTTTTTGACTCATG--ATTTAATCTGTGTCGTTTT-CATTTTTTGACTTGTGGTTTAAT
* *** *
3462012 CCCTATCATTTTCATTTTTTGATGTGTTGTTTAATCCCTAT-A
63 CCCTATCATTTTCACTTTTTGACACGTGGTTTAATCCCTATCA
* * * * * ** *
3462054 TTTTTATTTTTTGACTCCTGTTTTAATCTCG-ATCATTTTCTTTTTTTGACTCATGGTATAATCC
1 TTTTTATTTTTTGACTCATGATTTAATCT-GTGTCGTTTTCATTTTTTGACTTGTGGTTTAATCC
* * * *
3462118 CTGTCATTTTTCA-TTTTTGGACTCATTGTTTAAT-CCTA--A
65 CTATCA-TTTTCACTTTTT-GACACGTGGTTTAATCCCTATCA
* * ** * *
3462157 TTGCTTTCATTTTTTGACTCATGGTTTAATCCTAGTG--GTTTTCATTTTTTAACTCATGTTTTG
1 TT--TTT-ATTTTTTGACTCATGATTTAAT-CT-GTGTCGTTTTCATTTTTTGACTTGTGGTTTA
* * * ** ** * *
3462220 AT-CTTGGTCATTTTCATTTTTTGATTCGTAATTTAAT-TCTGGTCA
61 ATCCCT-ATCATTTTCACTTTTTGACACGTGGTTTAATCCCT-ATCA
* ** * *
3462265 TTTTTATTTCTCTGACTTGTGGTTTAATCCTCGT-T-GTCTTCATTTTTTGACTTGTGGTTTAA-
1 TTTTTATTT-TTTGACTCATGATTTAAT-CT-GTGTCGTTTTCATTTTTTGACTTGTGGTTTAAT
* * * *
3462327 CCCTGATCATTTTTCATTTTTTGACTA-GTAGTTTCAT-CTTAGTCA
63 CCCT-ATCA-TTTTCACTTTTTGAC-ACGTGGTTTAATCCCTA-TCA
* * ** * ** * ** *
3462372 TTTTCATTTTTTAACTTGTGGTTTAATCCCTATCGTTTTCATTTTTTGACTAATAGTTTAAT-CC
1 TTTTTATTTTTTGACTCATGATTTAATCTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATCCC
* * * * * * **
3462436 TAGTCATTTTTAGTTTTAGACTCATGATTTAATTTC-AGTCA
66 TA-TCATTTTCACTTTTTGACACGTGGTTTAATCCCTA-TCA
* * * * *
3462477 TTTTTATTTTTTGACTCATGATTTAAT-TTTGGTTGGTTTT-ATTTCTTGACTAGTGGTTTAGT-
1 TTTTTATTTTTTGACTCATGATTTAATCTGT-G-TCGTTTTCATTTTTTGACTTGTGGTTTAATC
* * * * * * ** *
3462539 CTTGGTCATTTTCATTTTTTGACTCGTGATTTGAT-TTTGGTCA
64 CCT-ATCATTTTCACTTTTTGACACGTGGTTTAATCCCT-ATCA
* * ** * * ** **
3462582 TTTTTATTTCTTTGACTCGTGATTTAATGCCG-GTTATTTTCTTTTTTTGAATCATCATTTAAT-
1 TTTTTATTT-TTTGACTCATGATTTAAT-CTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATC
* * * * * *
3462645 TCTAGTCGTTTTAATTTTTTGACTCGTGGTTTAATCTCTATCA
64 CCTA-TCATTTTCACTTTTTGACACGTGGTTTAATCCCTATCA
* * * * * * * * *
3462688 TTGTCATTTTTTTACTTAT-AGTTTAATCCT-TATTGTTTTACATTTTTTGACTTATGCTTTAGT
1 TTTTTATTTTTTGACTCATGA-TTTAAT-CTGTGTCGTTTT-CATTTTTTGACTTGTGGTTTAAT
* * *** * * *
3462751 CCCTGTCATTTTCATTTTTTGACGTATTGTTTAATCCTTGTCA
63 CCCTATCATTTTCACTTTTTGACACGTGGTTTAATCCCTATCA
* ** * * *
3462794 TTTTT-TTTAGTTG-----TGA-TTAATCTCAGTTGTTTTCATTTTTTGACTTGTCGTATAATCC
1 TTTTTATTT-TTTGACTCATGATTTAATCTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATCC
* * * ** * *
3462852 CAATCATTTTTCA-TTTTCTGACTCATCATTTAATCTCGATCA
65 CTATCA-TTTTCACTTTT-TGACACGTGGTTTAATCCCTATCA
* * * *
3462894 CTTTCATTTTTTTGACTCATGTTTTAATCCTG-GTGGTTTTCATTTT
1 TTTTTA-TTTTTTGACTCATGATTTAAT-CTGTGTCGTTTTCATTTT
3462940 CTCATTTAAG
Statistics
Matches: 2025, Mismatches: 514, Indels: 296
0.71 0.18 0.10
Matches are distributed among these distances:
99 30 0.01
100 37 0.02
101 4 0.00
102 4 0.00
103 36 0.02
104 178 0.09
105 754 0.37
106 755 0.37
107 128 0.06
108 18 0.01
110 2 0.00
113 1 0.00
114 5 0.00
116 2 0.00
117 44 0.02
118 27 0.01
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (105 bp):
TTTTTATTTTTTGACTCATGATTTAATCTGTGTCGTTTTCATTTTTTGACTTGTGGTTTAATCCC
TATCATTTTCACTTTTTGACACGTGGTTTAATCCCTATCA
Found at i:3461216 original size:82 final size:82
Alignment explanation
Indices: 3461061--3461216 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 82
3461051 GTCCCAGTCG
* * *
3461061 TTTTCATTTTCTAACTTGTGCTTTAATTTTCGTCATTTTCATTTTTTGATTTGTAATTTAATTCT
1 TTTTCATTTTCTAACTCGTGCTTTAATTCTCGTCATTTTCATTTTTTGATTTATAATTTAATTCT
*
3461126 GGTAATTTTCATTATCA
66 GATAATTTTCATTATCA
* ** * *
3461143 TTTTCATTTTCTAACTCGTGGTTTAA-TCTCGATGGTTTTCATTTTTTGATTTATGATTTAATTT
1 TTTTCATTTTCTAACTCGTGCTTTAATTCTCG-TCATTTTCATTTTTTGATTTATAATTTAATTC
*
3461207 TGATCATTTT
65 TGATAATTTT
3461217 TATTTCTCTG
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
81 4 0.06
82 59 0.94
ACGTcount: A:0.20, C:0.12, G:0.10, T:0.58
Consensus pattern (82 bp):
TTTTCATTTTCTAACTCGTGCTTTAATTCTCGTCATTTTCATTTTTTGATTTATAATTTAATTCT
GATAATTTTCATTATCA
Found at i:3461706 original size:70 final size:70
Alignment explanation
Indices: 3460038--3469416 Score: 1819
Period size: 70 Copynumber: 132.4 Consensus size: 70
3460028 ATTTTCATTA
* * *
3460038 TCATTTTCATTTTTTGACTCGTTGTTTAATCTCGATCATTTTCATTTTCTGACTCATGATTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
*
3460103 -TTTG
66 CCTTG
* * * * * * *
3460107 ATCATTTTTATTTCTCT-AGT-TTGTGATTTAATACT-GATCGTTTTCATTTTTTGACTCATGAT
1 -TCATTTTCATTT-TTTGACTCATG-G-TTTAAT-CTCGATCATTTTTATTTTCTGACTCATGAT
**
3460169 TTAAT-CTCAA
61 TTAATCCT-TG
* * * * * * * * *
3460179 TCATTTTTATTTTCTAACCCATGGTTTAATCTTGGTCATTTTCATTTTCTGACCCATGTTTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
*
3460244 -CTCAG
66 CCT-TG
* * * * * * * *
3460249 TCGTTTTCATTTTTTGACTCGTGATTTAATC-CTAGTCGTTTTCATTTTTTGACTCGTGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATTTAA
**
3460313 TTCC-CA
65 -TCCTTG
*
3460319 TCATTTTCATTTTCTT-ACTCATGATTTAAT-TCTGATCATTTTTATTTCTCTGACTCATTG-TT
1 TCATTTTCATTTT-TTGACTCATGGTTTAATCTC-GATCATTTTTATTT-TCTGACTCA-TGATT
*
3460381 TAATCCCTG
62 TAATCCTTG
** * * * * *
3460390 TTGTCTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTTCATTTTCTAACT-AGTGGTTTC
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTT-ATTTTCTGACTCA-TGATTTA
*
3460454 AT-CTCAG
64 ATCCT-TG
* * * * * * * *
3460461 TCGTTTTTATTTTCTGACTCGTGGTTTAATCCCTATCATTTTCAGTTTT-AGACTCATGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTA-TTTTCTGACTCATGATTTAA
3460525 T--TTCAG
65 TCCTT--G
* * * * * ** * *
3460531 TCATTTTTATTTTCTAACTCATGATTTAAT-TCCAATCGGTTTCATTTAT-TGACT-AGTGGTTT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-CGATCATTTTTATTT-TCTGACTCA-TGATTT
3460593 AATCC-TG
63 AATCCTTG
* * * *
3460600 ATCATTTTCATTTTTTGACTCATGATTTAATTTCAATCATTTTTATTTCTTTGACTCATGATTTA
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTT-TCTGACTCATGATTTA
*
3460665 ATGCCGT-
64 AT-CCTTG
* * * * * * * * ** *
3460672 TCATTATCACTTTTTGAATCATCGTTTAAT-TGTGATCGTTTTCATTTTTTGACTTGTGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-CGATCATTTTTATTTTCTGACTCATGATTTAA
*
3460736 T-CTCTA
65 TCCT-TG
* * ** * ** * *
3460742 TCTTTTTCACTTTTTGACTTGTGGTTTAATCTCTATTGTTTTATATTTTCTTACTCATGCTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTT-TATTTTCTGACTCATGATTTAA
*
3460807 TCCCTG
65 TCCTTG
* * * * * * * * *
3460813 TCATTTTCATTTTTTGACACGTTGTTTAATCCCTATCATTTTCATTTTTTGACACGTTG-TTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTC-ATGATTTAA
*
3460877 TCCCTG
65 TCCTTG
* * * * ** * * ** * *
3460883 TCATTTTTATTTTTTGATTCATGATTTAATCTCGGTTGTTTTCATTTTTTGACTTGTGGTATAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
*
3460948 CCTAG
66 CCTTG
** * * ** * * *
3460953 TTGTTTTTCATTTTATGACTCATCGTTTAATC-CTGATCGCTTTCATTTTTTGCCTCAT-AGTTT
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTTATTTTCTGACTCATGA-TTT
*
3461016 AATCCTGG
63 AATCCTTG
** * * * * * * * * * ** *
3461024 TGGTTTTCATTTTCTCATTCA-GGGTTAGTC-CCAGTCGTTTTCATTTTCTAACTTGTGCTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATTTAA
*
3461087 T-TTTCG
65 TCCTT-G
* ** ** * *
3461093 TCATTTTCATTTTTTGATTTGTAATTTAATTCTGGTAATTTTCATTATCATTTTCATTTTCTAAC
1 TCATTTTCATTTTTTGACTCATGGTTTAA-TCTCG--A---TC---AT--TTTT-ATTTTCTGAC
* * *
3461158 TCGTGGTTTAAT-CTCG
54 TCATGATTTAATCCTTG
** * * * * * * ** *
3461174 ATGGTTTTCATTTTTTGATTTATGATTTAATTTTGATCATTTTTATTTCTCTGGCTTGTGATTTC
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTT-TCTGACTCATGATTTA
3461239 ATACC--G
64 AT-CCTTG
* * * * * *
3461245 ATCATTTTCATTTTTTGACTCATGATTTAATCTTGATCGTTTTTATTTTTTAACCCATTG-TTTA
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCA-TGATTTA
**
3461309 ATCCTAA
64 ATCCTTG
* * * * * *
3461316 TCTTTTTCATTTTTTGACCCATGGTTTAATC-CCATTCATTTTCATTTTCTAACTCGTGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATTTAA
**
3461380 TCCAAG
65 TCCTTG
* * * * * * *
3461386 TCATTTTTATTTTCTGACTCAAGGTTTAATCTCAATCGTTTTTATTTTTTGACTCGTGATTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
3461451 -CTTGG
66 CCTT-G
* ** * * * *
3461456 TCATTTTCATTTTCTGACTTGTAGTTTAAT-TCCCATCGTTTTCATTTTCTGACTCATGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-CGATCATTTTTATTTTCTGACTCATGATTTAA
* *
3461520 TTCTGG
65 TCCTTG
* * * * * ** * * * * *
3461526 TCATTTTTATTTCTCTGAGTCATGGTTTAGTCCCTG-TTGTCTTCATTTTTTGACTCGTGCTTTA
1 TCATTTTCATTT-TTTGACTCATGGTTTAATCTC-GATCATTTTTATTTTCTGACTCATGATTTA
*
3461590 ATCC-CG
64 ATCCTTG
* ** ** * * * *
3461596 ATCATTTTTCATTTTTTGATTGGTGCCTTCATCTCG-TCATTTTTGTTCTCTGACTCATGGTTTA
1 -TCA-TTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTA
3461660 ATCCTTG
64 ATCCTTG
* * ** *
3461667 TCATTTTGATTTTTTGACTCGTGGTTTAATCTCGATCATTTTTAGTTTT-AAACTTATGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTA-TTTTCTGACTCATGATTTAA
*
3461731 T-TTTG
65 TCCTTG
* ** ** * *
3461736 ATCATTTTTATTTTTTGACTTGTAATTTAAT-TATGATCATTTTT-GTTTCTTGACT-AGTCG-T
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCT-CGATCATTTTTATTTTC-TGACTCA-T-GAT
*
3461797 TTAATCC-CG
61 TTAATCCTTG
* * ** * * * *
3461806 ATCATTTTGA--TTCTGACTTGTGATTTGATTTCAATCATTTTTA-TTTCATTGACTCATGATTT
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTC--TGACTCATGATTT
* *
3461868 AAT-GTCAG
63 AATCCT-TG
* * * ** * *
3461876 TTATTTTTATTTTTTGACTTATCTTTTAAT-TCTGATC-TTTTTCATTTTTTGACTCATGGTTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTT-ATTTTCTGACTCATGATTTA
*
3461939 AT-CTCGG
64 ATCCT-TG
* * * * * ** * * * ** *
3461946 TCATTTCCAATTTTTGACT--TGCTATTTAATCCCTATTGTTTTACATTTTTTGGCTTGTGCTTT
1 TCATTTTCATTTTTTGACTCATG--GTTTAATCTCGATCATTTT-TATTTTCTGACTCATGATTT
* *
3462009 AATCCCTA
63 AATCCTTG
* * * * * *
3462017 TCATTTTCATTTTTTGA-T-GTGTTGTTTAATCCCTAT-ATTTTTATTTTTTGACTCCTGTTTTA
1 TCATTTTCATTTTTTGACTCATG--GTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTA
*
3462079 AT-CTCG
64 ATCCTTG
* * *
3462085 ATCATTTTCTTTTTTTGACTCATGGTATAATCCCTG-TCATTTTTCATTTT-TGGACTCATTG-T
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTT-ATTTTCT-GACTCA-TGAT
**
3462147 TTAATCCTAA
61 TTAATCCTTG
*** * ** * * * * *
3462157 TTGCTTTCATTTTTTGACTCATGGTTTAATC-CTAGTGGTTTTCATTTTTTAACTCATGTTTTGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATTTAA
3462221 T-CTTGG
65 TCCTT-G
* * ** * ** *
3462227 TCATTTTCATTTTTTGATTCGTAATTTAAT-TCTGGTCATTTTTATTTCTCTGACTTGTGGTTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTTATTT-TCTGACTCATGATTTA
*
3462291 ATCCTCG
64 ATCCTTG
** * ** * *
3462298 TTGTCTTCATTTTTTGACTTGTGGTTTAA-CCCTGATCATTTTTCATTTTTTGACT-A-GTAGTT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTT-ATTTTCTGACTCATG-A-TT
*
3462360 TCAT-CTTAG
62 TAATCCTT-G
* ** * * * * * *
3462369 TCATTTTCATTTTTTAACTTGTGGTTTAATCCCTATCGTTTTCATTTTTTGACTAAT-AGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGA-TTTAA
*
3462433 TCCTAG
65 TCCTTG
* * * * * *
3462439 TCATTTTTAGTTTTAGACTCATGATTTAATTTC-AGTCATTTTTATTTTTTGACTCATGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATTTAA
*
3462503 T-TTTGG
65 TCCTT-G
** * * * * * * * *
3462509 TTGGTTTT-ATTTCTTGACT-AGTGGTTTAGTCTTGGTCATTTTCATTTTTTGACTCGTGATTTG
1 -TCATTTTCATTTTTTGACTCA-TGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTA
*
3462572 AT-TTTGG
64 ATCCTT-G
* * * * * * * *
3462579 TCATTTTTATTTCTTTGACTCGTGATTTAATGC-CGGTTATTTTCT-TTTTTTGAATCATCATTT
1 TCATTTTCATTT-TTTGACTCATGGTTTAAT-CTCGATCATTTT-TATTTTCTGACTCATGATTT
* *
3462642 AATTCTAG
63 AATCCTTG
* * * * * * * * *
3462650 TCGTTTTAATTTTTTGACTCGTGGTTTAATCTCTATCATTGTCATTTTTTTACTTAT-AGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGA-TTTAA
*
3462714 TCCTTA
65 TCCTTG
** * * * * * *
3462720 TTGTTTTACATTTTTTGACTTATGCTTTAGTCCCTG-TCATTTTCATTTTTTGACGT-ATTG-TT
1 TCATTTT-CATTTTTTGACTCATGGTTTAATCTC-GATCATTTTTATTTTCTGAC-TCA-TGATT
3462782 TAATCCTTG
62 TAATCCTTG
* * ** * * ** *
3462791 TCA--TT--TTTTTT-AGT--TGTGATTAATCTC-AGTTGTTTTCATTTTTTGACTTGTCG-TAT
1 TCATTTTCATTTTTTGACTCATG-GTTTAATCTCGA-TCATTTTTATTTTCTGACTCAT-GATTT
***
3462847 AATCCCAA
63 AATCCTTG
* ** * * * *
3462855 TCATTTTTCATTTTCTGACTCATCATTTAATCTCGATCACTTTCATTTTTTTGACTCATGTTTTA
1 TCA-TTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTA-TTTTCTGACTCATGATTTA
*
3462920 ATCCTGG
64 ATCCTTG
** * * * * * * * * * *
3462927 TGGTTTTCATTTTCTCATTTAAGGATTAATCTC-AGTCATTTTCATTTTTTGACTCGTGCTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATTTAA
*
3462991 T-TTTAG
65 TCCTT-G
* * * * * *
3462997 TCGTTTTCA-TTTTTAACTCGCAT--TTTAATCTCGATCA-TTTCATTTTTTGACTCGTAATTTA
1 TCATTTTCATTTTTTGACT--CATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTA
3463058 ATTCCAGTAATTG
64 A-TCC-----TTG
* * **
3463071 TCATTATCATTTCCATTTTTTGACTCATGGTTTAATCTCGATCATTTTCATTTTCTAACTTGTGA
1 TC---AT--TTT-CATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGA
*
3463136 TTTAAT-TTTG
60 TTTAATCCTTG
* * ** * * *
3463146 ATCATTTTTATTTCTCTGACTTGTGATTTAATAC-CGATCGTTTTCATTTTCTGACTCATGATTT
1 -TCATTTTCATTT-TTTGACTCATGGTTTAAT-CTCGATCATTTTTATTTTCTGACTCATGATTT
3463210 AAT-CTTAG
63 AATCCTT-G
** * * ** **
3463218 TTTTTTTCATTTTTTGACTCGTGGTTTAAT-TCCCATTGTTTTTATTTTCTGACTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-CGATCATTTTTATTTTCTGACTCATGATTTAA
* *
3463282 TTCTGG
65 TCCTTG
* * ** * * *
3463288 TCATTTTTATTTCTCTGACTCATACTTTAATC-C-AT-GTTGTCTTCATTTTTTGACTCATGGTT
1 TCATTTTCATTT-TTTGACTCATGGTTTAATCTCGATCATT-T-TT-ATTTTCTGACTCATGATT
3463350 TAATCC-TG
62 TAATCCTTG
* * * ** * * * * *
3463358 ATCGTTTTTCATTTTCTAACTGGTGGTTTTATCT-TATTCGTTTTCATTCTT-TGACTCATGGTT
1 -TC-ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCATTTTTATT-TTCTGACTCATGATT
* * *
3463421 TAAACCCTA
62 TAATCCTTG
** * * * * * * * * * **
3463430 TTGTTTTAATTTTCTAACACGTGGTTTAATCTTTG-TCGTTTTCAGTTTT-AGACTTGTGATTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATC-TCGATCATTTTTA-TTTTCTGACTCATGATTTA
*
3463493 AT-TTTGG
64 ATCCTT-G
* * ** * * * *
3463500 TCATTTTTATTTTTTTAACTTGTGATTTAATTTCAATCATTTTTATTTTCTGACTTATGATTTAA
1 TCATTTTCA-TTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAA
3463565 T--TTCG
65 TCCTT-G
* * * *
3463570 ATCATTTTCATTTCTTGAGT-A-GTGTTTAATCTC-AGTCATTTTCATTTTCTGACTCGTGATTT
1 -TCATTTTCATTTTTTGACTCATG-GTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATTT
* *
3463632 GATTC-TG
63 AATCCTTG
** * * * * * *
3463639 ATCACTTTT-ATTTCTTTGACTTGTGATTTAATGT-AAGTCATTTTCAATTTT-TGACTCTTCAT
1 -TCA-TTTTCATTT-TTTGACTCATGGTTTAATCTCGA-TCATTTT-TATTTTCTGACTCATGAT
*
3463701 TTAAT--TTCAA
61 TTAATCCTT--G
* * * * * * ** *
3463711 TCATTTTCATTCTCTGACTCATGGTTTGATCTCAATCATTTTCACTTTT-TAACTTGTGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTA-TTTTCTGACTCATGATTTAA
3463775 TCC-T-
65 TCCTTG
* * * * * *
3463779 TCTTGTTTAACTTTTTTGACTCATGCTTTAATCCCCG-TCATTTTTCTTTTTTGACTCATGATTT
1 TCAT-TTTCA-TTTTTTGACTCATGGTTTAAT-CTCGATCATTTTTATTTTCTGACTCATGATTT
*
3463843 AATCAC-GG
63 AATC-CTTG
* * ** *
3463851 TCATTTTCATTTTTTGACTCATGGTATAATC-CTGGTCATTTTTCATTGTT-TGACTTGTCATTT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTT-ATT-TTCTGACTCATGATTT
3463914 AAT-CTTG
63 AATCCTTG
* * * * * * *
3463921 ATCGCTTTT-ATTTTTTGACTCATGGTTTAATCTTGGT-AGTTTTCATTTTCTCAC-CTAGGGTT
1 -TC-ATTTTCATTTTTTGACTCATGGTTTAATCTCGATCA-TTTTTATTTTCTGACTC-ATGATT
* *
3463983 TAGTCCTAG
62 TAATCCTTG
** * * * * * * *
3463992 TCATTTTTGGTTTTCTGACTCGTGCTTTAAT-TATGATCATTTTCATTTTTTGACTCATAATTTA
1 TCA-TTTTCATTTTTTGACTCATGGTTTAATCT-CGATCATTTTTATTTTCTGACTCATGATTTA
*
3464056 AT-TTTG
64 ATCCTTG
* ** * ** * * * * * * *
3464062 ATAATTTT--TTAATT-A-TCAT-TTTTGTTTTCTTACTCATGGTTTAATCTCAATTATTTTCAT
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GA-TCAT-TTTTATTTTC--TGA--CTCAT
** * * *
3464122 TTTTTGACTCATGATT
58 GATTT-AATCCT--TG
* ** * * * *
3464138 TAATTTCGATCATTTTTATTTCTCTGGCTTGTGATTTAATACT-GATCGTTTTCATTTTCTAACT
1 TCATTT---TCA--TTT-TTTGACT--CATG-G-TTTAAT-CTCGATCATTTTTATTTTCTGACT
* *
3464202 CATAATTTAAT-CTCAG
55 CATGATTTAATCCT-TG
* ** ** * * * *
3464218 TCATTTTTATTTTCTAAAC-CATGGTTTAATCTCGATTGTTTTCATTTTCTAACCCATGGTTTAA
1 TCATTTTCATTTT-TTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAA
*
3464282 TTC-TG
65 TCCTTG
* * * * * * ** *
3464287 ATCATTTTCATTTTCTGACTCATGATTTAATATGGGTCATTTTTATTTTTTGACTTGTGGTTTAA
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAA
3464352 TCC-TG
65 TCCTTG
* * * * * * *
3464357 AT-AGTTTTTATTTTTTGACTCGTGATTTAATCCCTATCATTTTCATTTTCTGACTCATGGTTTA
1 -TCA-TTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTA
**
3464421 ATTCC-CA
64 A-TCCTTG
* * * * * * *
3464428 TCATTTTCATTTTTTAACTCGTGATTTAATTTTGGTCATTTTTATTTCTCTGACTCATGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTT-TCTGACTCATGATTTAA
**
3464493 TCCCCG
65 TCCTTG
** * * * * ** * * *
3464499 TTGTCTTCATTTTCTGACTCATGATTTAATCTCAATTGTTTTTCATTTTTTGACT-AGTGGTTTC
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTT-ATTTTCTGACTCA-TGATTTA
*
3464563 AT-CTCTA
64 ATCCT-TG
* * * * * *
3464570 TCATTTTCATTCTCTGACTCATGGTTTAATCCCTATCCTTTTAATTTTCTGACTCATGATTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
3464635 CC-TG
66 CCTTG
* * * * * * * * * * * * * *
3464639 ATCGTTTTTAGTTTTAGGCTCGTGATTTATTTTTGGTCATTTTTATTTTTTGATTCGTGATTTAA
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAA
3464704 T--TTAG
65 TCCTT-G
** * * * * * * *
3464709 ATCATTTTCATTTCCTGCCT-AGTGGTTTAATCCCGGTTATTTTCATTTTCTAACTCGTGATTTG
1 -TCATTTTCATTTTTTGACTCA-TGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTT-
*
3464773 ATTCC-TG
63 AATCCTTG
* * * * * ** *
3464780 TCATTTTTATTTCTTTGACTCGTGATTTAATAC-C-AGTCATTTTCATTTTTTGACTTGTCATTT
1 TCATTTTCATTT-TTTGACTCATGGTTTAAT-CTCGA-TCATTTTTATTTTCTGACTCATGATTT
3464843 AAT--TTCGG
63 AATCCTT--G
** * * * * ** *
3464851 TTGTTTTCATTTTCTAACTCATGGTTTAATCTCGGTCA-TTTCACTTTT-TGACTTGTGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTA-TTTTCTGACTCATGATTTAA
*
3464914 TCTTTG
65 TCCTTG
** *** * * * ** * *
3464920 TTGTTTTACATTTTCCAACTCGTGCTTTAATCCTTG-TTGTTTTCATTTTCTGA-TGCATTATTT
1 TCATTTT-CATTTTTTGACTCATGGTTTAAT-CTCGATCATTTTTATTTTCTGACT-CATGATTT
*
3464983 -ATCCCTG
63 AATCCTTG
* * * * * *
3464990 TCATTTTTATTTTTTGACTCATGATTTAATC-CCAGTCATTTTTATTTTTTGACTCATGGTATAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATTTAA
*
3465054 TCC-CG
65 TCCTTG
* * ** * ** * * * *
3465059 ATCATTTTTCATTTTCTGACTTATCATTTAATCTTGATCGCTTTAATTTTCTAACTCGTGGTTTA
1 -TCA-TTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTA
*
3465124 ATCCTGG
64 ATCCTTG
** * ** * * * * * * *
3465131 TGGTTTTCATTTTTTCACTCGGGGTTTAGTCCCTATCATTTTCATTTTTTGACTCGTGCTTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
* *
3465196 TCTGG
66 CCTTG
* * * * * * * * *
3465201 TCATTTTCATTTTTTAACTCGTGTTTTAATCTGGATCCTTTTCATTTTCTAATTCATAATTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
*
3465266 -TTTG
66 CCTTG
* * * *
3465270 ATAATTTTCATTATCATTTTTGTTTTCTGACTCGTGGTTTAATCTCGATCATTTTCATTTTCTAA
1 -------TCATTTTCA----T-TTTT-TGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGA
* *
3465335 CTCGTGATTTAAT-TTTG
53 CTCATGATTTAATCCTTG
* * * ** * * ** * *
3465352 ATGATTTTTATTTCTTTGGCTTGTGATTTAATATAAATCATTTATATTTTTTGACTCATGATTTA
1 -TCATTTTCATTT-TTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTA
3465417 AT-CTTGG
64 ATCCTT-G
* * * * * * *
3465424 TCATTTTCATTTTTTAAC-CTATGGTTTAATCCCGGTCATTTTAATTTTCTAACCCATGGTTTAA
1 TCATTTTCATTTTTTGACTC-ATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAA
*
3465488 TCC-CG
65 TCCTTG
* * * * *
3465493 ATCATTTTCATTTTTTGACTCGTGATTTAATCTAGGTCATTTTTATTTTCTGACTCATGGTTTAA
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAA
**
3465558 TCCCAG
65 TCCTTG
* * * * **
3465564 TCATTTTTATTTTTTGACTCATGGTTTAAT-TCCCATTATTTTCATTTTCTGACTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-CGATCATTTTTATTTTCTGACTCATGATTTAA
*
3465628 T-TTTGG
65 TCCTT-G
* * * * * * * * * *
3465634 TCATTTTTATTTCTCTGACTCATGCTTTAGT-TCCCATTATCTTCATTTTCTGACTCGTGGTTTA
1 TCATTTTCATTT-TTTGACTCATGGTTTAATCT-CGATCATTTTTATTTTCTGACTCATGATTTA
3465698 ATCC-TG
64 ATCCTTG
* ** * * * * *
3465704 ATCGTTTTTCATTTTTTGACTGGTGGCTTCATCTTGGTCATTTTTATTCTT-TGACTCATGGTTT
1 -TC-ATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATT-TTCTGACTCATGATTT
* *
3465768 AATCCCTA
63 AATCCTTG
* * * * * *
3465776 TCGTTTTAATTTTTTTACTCATGGTTTAATCTCGATCATTTTTAGTTTT-AGACTCGTAATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTA-TTTTCTGACTCATGATTTAA
*
3465840 T-TTTGG
65 TCCTT-G
* * * * * * *
3465846 TCATTTTTATTTTCTAACTCATGATTTAAT-TCTGATCATTTTCA-TTTCTTTACT-AGTGGTTT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTTATTTTC-TGACTCA-TGATTT
3465908 AATCC-TG
63 AATCCTTG
* * * * * ** * *
3465915 ATCATTTTTATTTTCTAGACTCGTGATTTGAT-TTAAGTCATTTTTATTCCTT-TGACTCGTCAT
1 -TCATTTTCATTTT-TTGACTCATGGTTTAATCTCGA-TCATTTTTATT--TTCTGACTCATGAT
3465978 TTAATGCC--G
61 TTAAT-CCTTG
* * * * *
3465987 CTCATTGTCA-TTTTTGACTCGTGGTTTAAT-TCCAATCATTTTCATTTTTTGACTCATGATTTA
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCT-CGATCATTTTTATTTTCTGACTCATGATTTA
3466050 AT-CTTGG
64 ATCCTT-G
* * * * * * * * *
3466057 TCATTTTC-TCGTTTTGACTTA-GGTTTAAGCCCCGA-CGTTTTACATTTTTTGACTCGTGCTTT
1 TCATTTTCAT-TTTTTGACTCATGGTTTAA-TCTCGATCATTTT-TATTTTCTGACTCATGATTT
* *
3466119 AATCCCTA
63 AATCCTTG
* * * * *
3466127 TCGTTTTCA-TTTTT--C-AAT-G---CAT-T-G-TC-TTTTTATTTTTTGACTCGTGATTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
**
3466180 CCCAG
66 CCTTG
** * * ** * * *
3466185 TCATTTTCATTTTTTGACTCATTATTTAATCCCTATCGCTTTCATTTTTTGACTCATGGTTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
*
3466250 CCTGG
66 CCTTG
* * * * * * * * * * * *
3466255 TGGATTTT-ATTTTCTCACTCAGGGTTCT-GTC-CTAGTCGTTATCATTTTCTAACTCGTGCTTT
1 T-CATTTTCATTTTTTGACTCATGGTT-TAATCTCGA-TCATTTTTATTTTCTGACTCATGATTT
*
3466317 AAT-TTTGG
63 AATCCTT-G
* * * * * * * *
3466325 TGATTTTCATTTTTTAACTCATGTTTTGATCCCGAACATTTTCATTTTCTGACTCATAATTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
*
3466390 -TTTG
66 CCTTG
* * * * *
3466394 ATAATTTTCATTATCGTTTTTATTTTCTGACTCATGGTCTAATCTTGATCATTTTCATTTTTTGA
1 -TCATTTTC---A-------T-TTTT-TGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGA
3466459 CTCATGATTTAAT--TTCG
53 CTCATGATTTAATCCTT-G
* * * * ** * * * ** * * *
3466476 ATCATTTTTAATTCTCTGGCTTGTGATTTAATAC-GGATCGTTTCCATTTTTTAACTCGTGATTT
1 -TCA-TTTTCATTTTTTGACTCATGGTTTAAT-CTCGATCATTTTTATTTTCTGACTCATGATTT
*
3466540 AAT-CTCAG
63 AATCCT-TG
** * * * * * *
3466548 TTGTTTTCATTTTCT-AGCCCATGGTTT-ATCTTGATCATTTTCATTTTCTGACCCATGGTTTAA
1 TCATTTTCATTTTTTGA-CTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAA
*
3466611 T-CTCGG
65 TCCT-TG
* * * * * * * *
3466617 TCGTTTTCATTTTTTGACTCATGATTTAGTCCCAATCATTTTCATTTTTTCACTCATGATTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
* *
3466682 TCTAG
66 CCTTG
* * * ** * * *
3466687 TCTTTTTTATTTCTCTGACTCATGGTTTAATCCTCG-TTGTCTTCATTTTTTGACTCAT-AGTTT
1 TCATTTTCATTT-TTTGACTCATGGTTTAAT-CTCGATCATTTTTATTTTCTGACTCATGA-TTT
*
3466750 AATCCTGG
63 AATCCTTG
* * * * * *
3466758 TCATTTTTCATTTTCTGACT-AGTGGTTTCATCT-AAGTCATTTTCATTTTCTAACTCATGGTTT
1 TCA-TTTTCATTTTTTGACTCA-TGGTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATTT
*
3466821 AAT-CTGTA
63 AATCCT-TG
* * * ** **
3466829 TCGTTTTAATTTTTTGACTCATGGTTTAATC-CTGCTTGTTTTTAGTTTT-AAACTCATGATTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTTA-TTTTCTGACTCATGATTTA
*
3466892 AT--TTAAA
64 ATCCTT--G
* * * * ** *
3466899 TTATTTTTATTTTCTGACT-ACTGATTTAAT-TCTGATCGGTTTCA-TTTCTTGACT-AGTTG-T
1 TCATTTTCATTTTTTGACTCA-TGGTTTAATCTC-GATCATTTTTATTTTC-TGACTCA--TGAT
3466959 TTAAT-CTTAG
61 TTAATCCTT-G
* * * * * * * * *
3466969 TCACTTTCATTTTCTGACCCATGATTTGATTTTGATTATTTTTATTTCTTTGACTCATGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTT-TCTGACTCATGATTTAA
3467034 TACC--G
65 T-CCTTG
* * ** * ** * * * **
3467039 ATCGTTTTTA-TTTTTGACTTGTGATTTAATCTTTATTATTTTCACTTTT-TAACTTGTGGA-TT
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTA-TTTTCTGACTCAT-GATTT
3467101 AATCCCCATTG
63 AAT--CC-TTG
* ** * * * * * *
3467112 T--TTTACATTTTTTGACTTTTGCTTTAATCTCTG-TCATTTTCATTTTTTGACGCGTTG-TTTG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTTATTTTCTGACTC-ATGATTTA
3467173 ATCCCTT-
64 AT-CCTTG
* * * * ** * * ** * *
3467180 TGATTTTTATTTTTTGACTCGTGATTTAATCTCGATTGTTTTCATTTTTTGACTTGTGGTATAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
*
3467245 CCTAG
66 CCTTG
* * * ** * * *
3467250 TCTTTTTTCATTTTTTGACTCATCGTTTAATC-CTAATCGCTTTTATTTTTTGACTCGTGGTTTA
1 TC-ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTTATTTTCTGACTCATGATTTA
3467314 AT-CTTG
64 ATCCTTG
* * * * * * * * * * *
3467320 GCGGTTTTC-TTTTTCTCATTAAGGGGTTAGTC-CCAGTCATTTTCATTTTCTAACT--TGTACT
1 TC-ATTTTCATTTTT-TGACTCATGGTTTAATCTCGA-TCATTTTTATTTTCTGACTCATG-A-T
*
3467381 TTAAT-TTTGG
61 TTAATCCTT-G
* ** * * *
3467391 TCATTTTCATTTTCTGACT-AGTAATTTAATTTTGATAATTTTCATTATCATTTTCATTTTCTAA
1 TCATTTTCATTTTTTGACTCA-TGGTTTAATCTCG---A---TC---AT--TTTT-ATTTTCTGA
* * * ** *
3467455 CTCGTGGTTTTAATCTCG
53 CTCATGATTTAATCCTTG
* * * * ** **
3467473 --ATGGTTTTCATTTTTTGACTCGTGATTTAATTTTAATCATTTTTATTTCTCT-AGCTTGTGAT
1 TCAT--TTTC-ATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTT-TCTGA-CTCATGAT
* *
3467535 TTAAT-ATCG
61 TTAATCCTTG
* * * * * * *
3467544 ATCATTTTCATTTTCTGACTCGTGATTTAATCTCGGTTAATTTCTT-TTTT-TAAC-CTATGGTT
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTT-TTATTTTCTGACTC-ATGATT
3467606 TAATCC-TG
62 TAATCCTTG
* * * *
3467614 ATCATTTTCATTTTTTGACTCGA-GCTTTTAATCT-TAGTCTTTTTTATTTTTTGACTCATGATT
1 -TCATTTTCATTTTTTGACTC-ATG-GTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATT
*
3467677 TAAT-CTCG
62 TAATCCTTG
* * * * * * *
3467685 ATCGTTTTTATTTTCTGGCTCGTGGTTTAAT-TC--CCATTGATTTCATTTTTTGACTCATGATT
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATT--TTT-ATTTTCTGACTCATGATT
* *
3467747 TAATTCTAG
62 TAATCCTTG
* * * * * ** * * * *
3467756 TTATTTTTATTTCTTTGAGTCATGGTTCAATCCCTG-TTGTTTTCATTGTCTAACTCA-CAGTTT
1 TCATTTTCATTT-TTTGACTCATGGTTTAATCTC-GATCATTTTTATTTTCTGACTCATGA-TTT
3467819 AATCCCAATTG
63 AAT-CC--TTG
** * * ** * * *
3467830 T--TTTTCATTTTTTGACTGGTGGTTTCATCTC-AGTCATTTTCATCCTCTAACTCATAATTCAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATTTAA
3467892 TACC-TG
65 T-CCTTG
* ** * * **
3467898 TCATTTTCATTTTTTGACTCATGGTTTAATCTTGATTGTTTTCAATTTT-AGACTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTT-TATTTTCTGACTCATGATTTAA
3467962 T--TTCGG
65 TCCTT--G
* * * * * * *
3467968 TCATTTTTATTTTTCTGACTCATGATTTAATTTTGGTCATTTTCA-TTTCTTGACT-AGTGGTTT
1 TCATTTTCATTTTT-TGACTCATGGTTTAATCTCGATCATTTTTATTTTC-TGACTCA-TGATTT
*
3468031 AAT-CTAGG
63 AATCCT-TG
* * * * * * * * *
3468039 TCATTTTCATTTTTTGACTCATCGTTGAATC-CTGGTCGTTTTCATTTTTTGACTTAAGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTTATTTTCTGACTCATGATTTAA
*
3468103 T-CTCGG
65 TCCT-TG
* * * * ** * * *
3468109 TCATTGTCACTTTTTGACTTATGGTTTAATC-CTTATTGTTTTACATTTTCTAACTCATGCTTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTT-TATTTTCTGACTCATGATTTA
*
3468173 ATCCCTG
64 ATCCTTG
* * * * * *
3468180 TCATTTTCATTTTCTGACACATTGTTTAATCCTTG-TCATTTTTATTTTTTGACTCATGTTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTCGATCATTTTTATTTTCTGACTCATGATTTAA
*
3468244 T-CTCGG
65 TCCT-TG
* * * * * *
3468250 TCATTTTTATTTTTTGACTCATGGTTTAAACCCTATCATTTTTCATTTTCTGAGTCATCATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTT-ATTTTCTGACTCATGATTTAA
*
3468315 TCC-CG
65 TCCTTG
** * * * ** ** * * * * *
3468320 ATCGCTTTCATTTTCTGACTCATGGTTTAATCTTGGTGGTTTTCGTTTTCTCACTTAGGGTTTAG
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAA
***
3468385 TCCCAA
65 TCCTTG
* * * ** * * * * * * * *
3468391 TCATTGTCATTTTCTAACTTGTGCTTTAAT-TCCAATCACTTTAATTTT-TAACTCACGTTTTGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-CGATCATTTTTATTTTCTGACTCATGATTTAA
*
3468454 T-CTCGG
65 TCCT-TG
* * * ** ** * *
3468460 TCACTTTGATTTTCTGACTTGTAATTTAATTATGGTAATTTTCATTATTTTTTTCATTTTCTGAC
1 TCATTTTCATTTTTTGACTCATGGTTTAA-TCTCG--A---TC---A--TTTTT-ATTTTCTGAC
** *
3468525 TTGTGGTTTAATCTCTATAG
54 TCATGATTTAATC-CT-T-G
* * * * * **
3468545 T--TTTT-ATTTTTTGACTCGTGATTTACTTTCGATCATTTTTATTTCTCTGGCTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTT-TCTGACTCATGATTTAA
* *
3468607 T-ATCG
65 TCCTTG
* * * * * * *
3468612 AT-AGTTTTCATTTTTTAACTCGTGATTTAATCTC-AACTATTTTCATTTTCTAAAC-CATGGTT
1 -TCA-TTTTCATTTTTTGACTCATGGTTTAATCTCGATC-ATTTTTATTTTCT-GACTCATGATT
**
3468674 TAATCCTAA
62 TAATCCTTG
* * * * * * **
3468683 TGATTTTCATTTTCTAACCCATGGTTTAATC-CTGATCATTTTCATTTTTTGACTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTTATTTTCTGACTCATGATTTAA
**
3468747 TCCAAG
65 TCCTTG
* * * * * * **
3468753 TCATTTTTATTTTCTGACTCGA-GGTTTAATCT-TAGTCTTTTTTATTTTTTTACTCACAATTTA
1 TCATTTTCATTTTTTGACTC-ATGGTTTAATCTCGA-TCATTTTTATTTTCTGACTCATGATTTA
3468816 AT-CTTG
64 ATCCTTG
* * * *
3468822 ATCGTTTTCATTTTTTGACTCATGGTTTAAT-TCCCATCAATTTCATTTTCTGACTCATGATTTA
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCT-CGATCATTTTTATTTTCTGACTCATGATTTA
* *
3468886 ATTCTAG
64 ATCCTTG
* * * * * ** * * * * *
3468893 TTATTTTTATTTCTCTAAGTCATGGTTTAATC-CTG-TTGTCTTCATTTTCTAACTCGTGGTTTA
1 TCATTTTCATTT-TTTGACTCATGGTTTAATCTC-GATCATTTTTATTTTCTGACTCATGATTTA
3468956 ATCCCGATTG
64 AT-CC--TTG
* ** * * * * *
3468966 T--TTTTCATTTTTTGATTGGTGGTTTCATCTCGGTC-TTTTTCATTCTCTAACTCATGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTT-ATTTTCTGACTCATGATTTAA
*
3469028 TACC-TA
65 T-CCTTG
* * * * ** * **
3469034 TCATTTTGATTTTTTGACTTATGGTTTAATCTTGGTTGTTTTTAGTTTT-AGACTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTA-TTTTCTGACTCATGATTTAA
*
3469098 T-TTTGG
65 TCCTT-G
* * * * * *
3469104 TCATTTTTATTTTTTTGACTCATGATTTAAT-TCTAGTCGTTTTCA-TTTCTTGACT-AGTGGTT
1 TCATTTTCA-TTTTTTGACTCATGGTTTAATCTCGA-TCATTTTTATTTTC-TGACTCA-TGATT
*
3469166 TAATCCTGG
62 TAATCCTTG
* * * * * *
3469175 TCATTTTCATTTTTTGACTTATCGTTGAATCTCGAT-ATTTTTCATTTTTTGACACGTGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTT-ATTTTCTGACTCATGATTTAA
3469239 T-CTTGG
65 TCCTT-G
* ** * * ** * * *
3469245 TCATTTTCACTTTTTGACTTGTGGTTTAA-CCCTTATTGTTTTACATTTTCTAACTCATGCTTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTT-TATTTTCTGACTCATGATTTA
* *
3469309 ATCCCTA
64 ATCCTTG
* * * * * *
3469316 TCATTTTCATTTTCTGA-TGCATTGTTTAATC-CTTATCACTTTTATTTTTTGACTCATGTTTTA
1 TCATTTTCATTTTTTGACT-CATGGTTTAATCTC-GATCATTTTTATTTTCTGACTCATGATTTA
3469379 AT-CTTGG
64 ATCCTT-G
* * *
3469386 TCATTTTTATTTTTTAACTCATGGTATAATC
1 TCATTTTCATTTTTTGACTCATGGTTTAATC
3469417 CCTATTGTTT
Statistics
Matches: 6883, Mismatches: 1777, Indels: 1298
0.69 0.18 0.13
Matches are distributed among these distances:
58 32 0.00
59 9 0.00
60 2 0.00
61 1 0.00
62 2 0.00
63 5 0.00
64 33 0.00
65 6 0.00
66 15 0.00
67 13 0.00
68 100 0.01
69 541 0.08
70 3168 0.46
71 2287 0.33
72 222 0.03
73 22 0.00
74 21 0.00
75 18 0.00
76 25 0.00
77 5 0.00
78 2 0.00
79 11 0.00
80 16 0.00
81 52 0.01
82 211 0.03
83 38 0.01
84 4 0.00
85 5 0.00
87 8 0.00
88 3 0.00
89 1 0.00
90 4 0.00
91 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (70 bp):
TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTTTCTGACTCATGATTTAAT
CCTTG
Found at i:3461996 original size:71 final size:71
Alignment explanation
Indices: 3461854--3462434 Score: 251
Period size: 71 Copynumber: 8.3 Consensus size: 71
3461844 TTTTATTTCA
* * * * * *
3461854 TTGACTCATGATTTAATGTC-AGTTATTTTTATTTTTTGACTTAT-CT-TTTAAT-TCTGATCTT
1 TTGACTCATGGTTTAATCTCGA-TCATTTTCATTTTTTGAC-TATGCTATTTAATCCCT-ATTTT
3461915 TTTCATTTT
63 TTTCATTTT
* * *
3461924 TTGACTCATGGTTTAATCTCGGTCATTTCCAATTTTTGACT-TGCTATTTAATCCCTATTGTTTT
1 TTGACTCATGGTTTAATCTCGATCATTTTCATTTTTTGACTATGCTATTTAATCCCTATT-TTTT
*
3461988 ACATTTT
65 TCATTTT
* ** * * * * * * *
3461995 TTGGCTTGTGCTTTAATCCCTATCATTTTCATTTTTTGA-TGTGTTGTTTAATCCCTATATTTTT
1 TTGACTCATGGTTTAATCTCGATCATTTTCATTTTTTGACTATGCTATTTAATCCCTATTTTTTT
3462059 -ATTTT
66 CATTTT
* * * * * *
3462064 TTGACTCCTGTTTTAATCTCGATCATTTTCTTTTTTTGACTCATGGTA--TAATCCCTGTCATTT
1 TTGACTCATGGTTTAATCTCGATCATTTTCATTTTTTGACT-ATGCTATTTAATCCCTAT-TTTT
3462127 TTCATTTT
64 TTCATTTT
* * * *** * **
3462135 TGGACTCATTGTTTAATC-CTAATTGCTTTCATTTTTTGACTCATG--GTTTAAT-CCTAGTGGT
1 TTGACTCATGGTTTAATCTC-GATCATTTTCATTTTTTGACT-ATGCTATTTAATCCCTA-TTTT
3462196 TTTCATTTT
63 TTTCATTTT
* * * * * * * *
3462205 TTAACTCATGTTTTGATCTTGGTCATTTTCATTTTTTGA-T-T-CGTAATTTAAT-TCTGGTCAT
1 TTGACTCATGGTTTAATCTCGATCATTTTCATTTTTTGACTATGC-T-ATTTAATCCCT-AT-TT
3462266 TTTT-ATTTCT
62 TTTTCATTT-T
* ** ** * * *
3462276 CTGACTTGTGGTTTAATCCTCG-TTGTCTTCATTTTTTGACT-TG-TGGTTTAA-CCCTGATCAT
1 TTGACTCATGGTTTAAT-CTCGATCATTTTCATTTTTTGACTATGCT-ATTTAATCCCT-AT-TT
3462337 TTTTCATTTT
62 TTTTCATTTT
* * * * * **
3462347 TTGACT-AGTAGTTTCATCT-TAGTCATTTTCATTTTTTAACT-TG-TGGTTTAATCCCTATCGT
1 TTGACTCA-TGGTTTAATCTCGA-TCATTTTCATTTTTTGACTATGCT-ATTTAATCCCTATTTT
3462408 TTTCATTTT
63 TTTCATTTT
* *
3462417 TTGACTAATAGTTTAATC
1 TTGACTCATGGTTTAATC
3462435 CTAGTCATTT
Statistics
Matches: 390, Mismatches: 89, Indels: 64
0.72 0.16 0.12
Matches are distributed among these distances:
67 1 0.00
68 1 0.00
69 50 0.13
70 133 0.34
71 192 0.49
72 13 0.03
ACGTcount: A:0.18, C:0.16, G:0.12, T:0.54
Consensus pattern (71 bp):
TTGACTCATGGTTTAATCTCGATCATTTTCATTTTTTGACTATGCTATTTAATCCCTATTTTTTT
CATTTT
Found at i:3462506 original size:18 final size:18
Alignment explanation
Indices: 3462444--3462507 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 18
3462434 CCTAGTCATT
*
3462444 TTTAGTTTTAGACTCATGA
1 TTTAATTTT-GACTCATGA
* * *
3462463 TTTAA-TTTCAGTCAT-T
1 TTTAATTTTGACTCATGA
*
3462479 TTTATTTTTTGACTCATGA
1 TTTA-ATTTTGACTCATGA
3462498 TTTAATTTTG
1 TTTAATTTTG
3462508 GTTGGTTTTA
Statistics
Matches: 33, Mismatches: 9, Indels: 7
0.67 0.18 0.14
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 16 0.48
19 8 0.24
ACGTcount: A:0.23, C:0.09, G:0.11, T:0.56
Consensus pattern (18 bp):
TTTAATTTTGACTCATGA
Found at i:3462506 original size:19 final size:19
Alignment explanation
Indices: 3462444--3462506 Score: 51
Period size: 19 Copynumber: 3.5 Consensus size: 19
3462434 CCTAGTCATT
* *
3462444 TTTAGTTTTAGACTCATGA
1 TTTAATTTTTGACTCATGA
* * *
3462463 TTTAA--TTTCAGTCAT-T
1 TTTAATTTTTGACTCATGA
*
3462479 TTTATTTTTTGACTCATGA
1 TTTAATTTTTGACTCATGA
3462498 TTTAATTTT
1 TTTAATTTT
3462507 GGTTGGTTTT
Statistics
Matches: 31, Mismatches: 10, Indels: 6
0.66 0.21 0.13
Matches are distributed among these distances:
16 4 0.13
17 7 0.23
18 8 0.26
19 12 0.39
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.57
Consensus pattern (19 bp):
TTTAATTTTTGACTCATGA
Found at i:3462733 original size:71 final size:70
Alignment explanation
Indices: 3462652--3462789 Score: 177
Period size: 71 Copynumber: 2.0 Consensus size: 70
3462642 AATTCTAGTC
* * * * *
3462652 GTTTTAATTTTTTGACTCGTGGTTTAATCTCTATCATTGTCATTTTTTTACTTATAGTTTAATCC
1 GTTTTAATTTTTTGACTCATGCTTTAATCCCTATCATTGTCATTTTTTGACGTATAGTTTAATCC
3462717 TTATT
66 TTATT
* * * * *
3462722 GTTTTACATTTTTTGACTTATGCTTTAGTCCCTGTCATTTTCATTTTTTGACGTATTGTTTAATC
1 GTTTTA-ATTTTTTGACTCATGCTTTAATCCCTATCATTGTCATTTTTTGACGTATAGTTTAATC
3462787 CTT
65 CTT
3462790 GTCATTTTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
70 6 0.11
71 51 0.89
ACGTcount: A:0.18, C:0.14, G:0.11, T:0.57
Consensus pattern (70 bp):
GTTTTAATTTTTTGACTCATGCTTTAATCCCTATCATTGTCATTTTTTGACGTATAGTTTAATCC
TTATT
Found at i:3462886 original size:36 final size:35
Alignment explanation
Indices: 3462823--3462923 Score: 94
Period size: 36 Copynumber: 2.8 Consensus size: 35
3462813 ATCTCAGTTG
** * *
3462823 TTTTCATTTTTTGACTTGTCGTATAATCCCAATCA
1 TTTTCATTTTTTGACTCATCATTTAATCCCAATCA
* * *
3462858 TTTTTCATTTTCTGACTCATCATTTAATCTCGATCA
1 -TTTTCATTTTTTGACTCATCATTTAATCCCAATCA
* **
3462894 CTTTCATTTTTTTGACTCATGTTTTAATCC
1 TTTTCA-TTTTTTGACTCATCATTTAATCC
3462924 TGGTGGTTTT
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
35 5 0.10
36 47 0.90
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTTTGACTCATCATTTAATCCCAATCA
Found at i:3463123 original size:35 final size:35
Alignment explanation
Indices: 3463076--3464057 Score: 333
Period size: 35 Copynumber: 27.9 Consensus size: 35
3463066 AATTGTCATT
* *
3463076 ATCATTTCCATTTTTTGACTCATGGTTTAATCTCG
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCG
* * ** * *
3463111 ATCATTTTCATTTTCTAACTTGTGATTTAATTTTG
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCG
* * **
3463146 ATCATTTTTATTTCTCTGACTTGTGATTTAATAC-CG
1 ATCATTTTCATTT-TTTGACTCATGATTTAAT-CTCG
* * *
3463182 ATCGTTTTCATTTTCTGACTCATGATTTAATCT-T
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCG
** * * *
3463216 AGTTTTTTTCATTTTTTGACTCGTGGTTTAAT-TCCC
1 A-TCATTTTCATTTTTTGACTCATGATTTAATCT-CG
** * * **
3463252 ATTGTTTTTATTTTCTGACTTGTGATTTAAT-TCTG
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTC-G
* * *
3463287 GTCATTTTTATTTCTCTGACTCAT-ACTTTAATC-C-
1 ATCATTTTCATTT-TTTGACTCATGA-TTTAATCTCG
** *
3463321 ATGTTGTCTTCATTTTTTGACTCATGGTTTAATC-CTG
1 ATCAT-T-TTCATTTTTTGACTCATGATTTAATCTC-G
* * * ** * * *
3463358 ATCGTTTTTCATTTTCTAACTGGTGGTTTTATCT-T
1 ATC-ATTTTCATTTTTTGACTCATGATTTAATCTCG
* * * * * *
3463393 ATTCGTTTTCATTCTTTGACTCATGGTTTAAACCCT
1 A-TCATTTTCATTTTTTGACTCATGATTTAATCTCG
** * * * * * * *
3463429 ATTGTTTTAATTTTCTAACACGTGGTTTAATCTTTG
1 ATCATTTTCATTTTTTGACTCATGATTTAATC-TCG
* * * ** * *
3463465 -TCGTTTTCAGTTTTAGACTTGTGATTTAATTTTG
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCG
* * * ** * *
3463499 GTCATTTTTATTTTTTTAACTTGTGATTTAATTTCA
1 ATCATTTTCA-TTTTTTGACTCATGATTTAATCTCG
* * * *
3463535 ATCATTTTTATTTTCTGACTTATGATTTAATTTCG
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCG
* *
3463570 ATCATTTTCATTTCTTGAGT-AGTG-TTTAATCTC-
1 ATCATTTTCATTTTTTGACTCA-TGATTTAATCTCG
* * *
3463603 AGTCATTTTCATTTTCTGACTCGTGATTTGAT-TCTG
1 A-TCATTTTCATTTTTTGACTCATGATTTAATCTC-G
** * *
3463639 ATCACTTTT-ATTTCTTTGACTTGTGATTTAATGT-A
1 ATCA-TTTTCATTT-TTTGACTCATGATTTAATCTCG
* * * * *
3463674 AGTCATTTTCAATTTTTGACTCTTCATTTAATTTCA
1 A-TCATTTTCATTTTTTGACTCATGATTTAATCTCG
* * * * *
3463710 ATCATTTTCATTCTCTGACTCATGGTTTGATCTCA
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCG
* * ** *
3463745 ATCATTTTCACTTTTTAACTTGTGGTTTAATC-C-
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTCG
* * * * *
3463778 TTCTTGTTTAACTTTTTTGACTCATGCTTTAATCCCCG
1 ATCAT-TTTCA-TTTTTTGACTCATGATTTAAT-CTCG
*
3463816 -TCATTTTTC-TTTTTTGACTCATGATTTAATCACG
1 ATCA-TTTTCATTTTTTGACTCATGATTTAATCTCG
* * *
3463850 GTCATTTTCATTTTTTGACTCATGGTATAATC-CTG
1 ATCATTTTCATTTTTTGACTCATGATTTAATCTC-G
* * ** * *
3463885 GTCATTTTTCATTGTTTGACTTGTCATTTAATCTTG
1 ATCA-TTTTCATTTTTTGACTCATGATTTAATCTCG
* * *
3463921 ATCGCTTTT-ATTTTTTGACTCATGGTTTAATCTTG
1 ATC-ATTTTCATTTTTTGACTCATGATTTAATCTCG
* * * * * * *
3463956 GT-AGTTTTCATTTTCTCAC-CTAGGGTTTAGTC-CT
1 ATCA-TTTTCATTTTTTGACTC-ATGATTTAATCTCG
** * * * *
3463990 AGTCATTTTTGGTTTTCTGACTCGTGCTTTAAT-TATG
1 A-TCA-TTTTCATTTTTTGACTCATGATTTAATCT-CG
*
3464027 ATCATTTTCATTTTTTGACTCATAATTTAAT
1 ATCATTTTCATTTTTTGACTCATGATTTAAT
3464058 TTTGATAATT
Statistics
Matches: 717, Mismatches: 176, Indels: 108
0.72 0.18 0.11
Matches are distributed among these distances:
33 4 0.01
34 57 0.08
35 456 0.64
36 185 0.26
37 12 0.02
38 3 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.53
Consensus pattern (35 bp):
ATCATTTTCATTTTTTGACTCATGATTTAATCTCG
Found at i:3463190 original size:71 final size:70
Alignment explanation
Indices: 3463091--3463730 Score: 310
Period size: 71 Copynumber: 9.1 Consensus size: 70
3463081 TTCCATTTTT
* * * * ** *
3463091 TGACTCATGGTTTAATCTCGATCATTTTCATTTTCTAACTTGTGATTTAATTTTGATCATTTTTA
1 TGACTCGTGATTTAATC-CGATCGTTTTCATTTTCTGACTCATGATTTAATTCTGATCATTTTTA
3463156 TTTCTC
65 TTTCTC
* * *
3463162 TGACTTGTGATTTAATACCGATCGTTTTCATTTTCTGACTCATGATTTAA-TCTTAGT-TTTTTT
1 TGACTCGTGATTTAAT-CCGATCGTTTTCATTTTCTGACTCATGATTTAATTCTGA-TCATTTTT
*
3463225 CATTT-TT
64 -ATTTCTC
* * * * ** *
3463232 TGACTCGTGGTTTAATTCCCATTGTTTTTATTTTCTGACTTGTGATTTAATTCTGGTCATTTTTA
1 TGACTCGTGATTTAA-TCCGATCGTTTTCATTTTCTGACTCATGATTTAATTCTGATCATTTTTA
3463297 TTTCTC
65 TTTCTC
* * * * *
3463303 TGACTCAT-ACTTTAATCC-AT-GTTGTCTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTT
1 TGACTCGTGA-TTTAATCCGATCG-T-T-TTCATTTTCTGACTCATGATTTAATTCTGATCATTT
3463365 TTCATTT-TC
62 TT-ATTTCTC
* * * * ** * ** **
3463374 TAACTGGTGGTTTTATCTTATTCGTTTTCATTCTT-TGACTCATGGTTTAAACCCT-ATTGTTTT
1 TGACTCGTGATTTAATCCGA-TCGTTTTCATT-TTCTGACTCATGATTT-AATTCTGATCATTTT
*
3463437 AATTT-TC
63 TATTTCTC
* * * * * ** * *
3463444 TAACACGTGGTTTAATCTTTG-TCGTTTTCAGTTTT-AGACTTGTGATTTAATTTTGGTCATTTT
1 TGACTCGTGATTTAATC--CGATCGTTTTCA-TTTTCTGACTCATGATTTAATTCTGATCATTTT
* *
3463507 TATTTTTT
63 TATTTCTC
* * * * * * * *
3463515 TAACTTGTGATTTAATTTCAATCATTTTTATTTTCTGACTTATGATTTAATT-TCGATCATTTTC
1 TGACTCGTGATTTAA-TCCGATCGTTTTCATTTTCTGACTCATGATTTAATTCT-GATCATTTTT
3463579 ATTTCT-
64 ATTTCTC
* * * * * *
3463585 TGAGTAGTG-TTTAATCTC-AGTCATTTTCATTTTCTGACTCGTGATTTGATTCTGATCACTTTT
1 TGACTCGTGATTTAATC-CGA-TCGTTTTCATTTTCTGACTCATGATTTAATTCTGATCATTTTT
*
3463648 ATTTCTT
64 ATTTCTC
* *** * * * *
3463655 TGACTTGTGATTTAATGTAAGTCATTTTCAATTTT-TGACTCTTCATTTAATT-TCAATCATTTT
1 TGACTCGTGATTTAATCCGA-TCGTTTTC-ATTTTCTGACTCATGATTTAATTCT-GATCATTTT
*
3463718 CA-TTCTC
63 TATTTCTC
3463725 TGACTC
1 TGACTC
3463731 ATGGTTTGAT
Statistics
Matches: 442, Mismatches: 92, Indels: 71
0.73 0.15 0.12
Matches are distributed among these distances:
68 3 0.01
69 53 0.12
70 137 0.31
71 225 0.51
72 21 0.05
73 2 0.00
74 1 0.00
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (70 bp):
TGACTCGTGATTTAATCCGATCGTTTTCATTTTCTGACTCATGATTTAATTCTGATCATTTTTAT
TTCTC
Found at i:3463211 original size:106 final size:104
Alignment explanation
Indices: 3463076--3465943 Score: 518
Period size: 106 Copynumber: 26.9 Consensus size: 104
3463066 AATTGTCATT
* * * * * *
3463076 ATCATTTCCATTTTTTGACTCATGGTTTAATCTCGATCATTTTCATTTTCTAACTTGTGATTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTAA
*
3463141 TTTTGATCATTTTTATTTCTCTGACTTGTGATTTAATACCG
66 TTTTGATCATTTTTATTT-T-TGACTTGTGATTTAATTCCG
* * * ** * *
3463182 ATCGTTTTCATTTTCTGACTCATGATTTAATCTTAGTTTTTTTCATTTTTTGACTCGTGGTTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTAA
*** ** *
3463247 TTCCCATTGTTTTTATTTTCTGACTTGTGATTTAATTCTG
66 TTTTGATCATTTTTATTTT-TGACTTGTGATTTAATTCCG
* * ** * **
3463287 GTCATTTTTATTTCTCTGACTCAT-ACTTTAATC-C-ATGTTGTCTTCATTTTTTGACTCATGGT
1 ATCATTTTCATTT-TCTGACTCATGA-TTTAATCTCAATCAT-T-TTCATTTTCTGACTTGTGGT
** * * * * * **
3463349 TTAATCCTGATCGTTTTTCATTTTCTAACTGGTGGTTTTA-TCTT
62 TTAATTTTGATCATTTTT-ATTTT-TGACTTGTGATTTAATTCCG
* * * * * ** * * **
3463393 ATTCGTTTTCATTCTT-TGACTCATGGTTTAAACCCTATTGTTTTAATTTTCTAACACGTGGTTT
1 A-TCATTTTCATT-TTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTT
* * * **
3463457 AATCTTTG-TCGTTTTCAGTTTTAGACTTGTGATTTAATTTTG
64 AAT-TTTGATCATTTTTA-TTTTTGACTTGTGATTTAATTCCG
* * * * ** * * * *
3463499 GTCATTTTTATTTTTTTAACTTGTGATTTAATTTCAATCATTTTTATTTTCTGACTTATGATTTA
1 ATCATTTTCA-TTTTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTA
* * * * *
3463564 ATTTCGATCATTTTCATTTCTTGAGTAGTG-TTTAATCTCAG
65 ATTTTGATCATTTTTATTT-TTGACTTGTGATTTAAT-TCCG
* * * * *
3463605 -TCATTTTCATTTTCTGACTCGTGATTTGAT-TCTGATCACTTTT-ATTTCTTTGACTTGTGATT
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-AATCA-TTTTCATTT-TCTGACTTGTGGTT
* * * * * *
3463667 TAA-TGTAAGTCATTTTCAATTTTTGACTCT-TCATTTAATTTCA
63 TAATTTTGA-TCATTTT-TATTTTTGACT-TGTGATTTAATTCCG
* * * *
3463710 ATCATTTTCATTCTCTGACTCATGGTTTGATCTCAATCATTTTCACTTTT-TAACTTGTGGTTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTCA-TTTTCTGACTTGTGGTTTA
** ** * *
3463774 ATCCT--TC-TTGTTTAACTTTTTTGACTCATGCTTTAATCCCCG
65 ATTTTGATCATT-TTT-A--TTTTTGACTTGTGATTTAAT-TCCG
* * ** * ** *
3463816 -TCATTTTTC-TTTTTTGACTCATGATTTAATCACGGTCATTTTCATTTTTTGACTCATGGTATA
1 ATCA-TTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTA
** * * *
3463879 ATCCTGGTCATTTTTCATTGTTTGACTTGTCATTTAA-TCTTG
65 ATTTTGATCATTTTT-ATT-TTTGACTTGTGATTTAATTC-CG
* * * *** * *
3463921 ATCGCTTTT-ATTTTTTGACTCATGGTTTAATCTTGGT-AGTTTTCATTTTCTCACCTAG-GGTT
1 ATC-ATTTTCATTTTCTGACTCATGATTTAATCTCAATCA-TTTTCATTTTCTGA-CTTGTGGTT
* ** * * * **
3463983 TAGTCCT-AGTCATTTTTGGTTTTCTGACTCGTGCTTTAATTATG
63 TAATTTTGA-TCATTTTT-ATTTT-TGACTTGTGATTTAATTCCG
* * * * **
3464027 ATCATTTTCATTTTTTGACTCATAATTTAATTTTGATAATTTTTTAATTATCATTTTTGTTTTCT
1 ATCATTTTCATTTTCTGACTC---A--TGA--TT--TAA---TCTCA--ATCATTTTCATTTTCT
* ** * ** * * ** *
3464092 TACTCATGGTTTAATCTCAATTATTTTCATTTTTTGACTCATGATTTAATTTCG
52 GACTTGTGGTTTAATTTTGATCATTTTTATTT-TTGACTTGTGATTTAATTCCG
* * ** * * * ** **
3464146 ATCATTTTTATTTCTCTGGCTTGTGATTTAATACT-GATCGTTTTCATTTTCTAACTCATAATTT
1 ATCATTTTCATTT-TCTGACTCATGATTTAAT-CTCAATCATTTTCATTTTCTGACTTGTGGTTT
* * * *
3464210 AA-TCTCAGTCATTTTTATTTTCTAAACCATG-G-TTTAA-TCTCG
64 AATTTTGA-TCATTTTTATTTT-T-GA-CTTGTGATTTAATTC-CG
** * * * * ** *
3464252 ATTGTTTTCATTTTCTAACCCATGGTTTAAT-TCTGATCATTTTCATTTTCTGACTCATGATTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-AATCATTTTCATTTTCTGACTTGTGGTTTA
* * * *
3464316 ATATGGGTCATTTTTATTTTTTGACTTGTGGTTTAA-TCCTG
65 ATTTTGATCATTTTTA-TTTTTGACTTGTGATTTAATTCC-G
* * * * * **
3464357 AT-AGTTTTTATTTTTTGACTCGTGATTTAATCCCTATCATTTTCATTTTCTGACTCATGGTTTA
1 ATCA-TTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTA
*** * * * **
3464421 ATTCCCATCATTTTCATTTTTTAACTCGTGATTTAATTTTG
65 ATTTTGATCATTTTTA-TTTTTGACTTGTGATTTAATTCCG
* * * * ** ** * ** *
3464462 GTCATTTTTATTTCTCTGACTCATGGTTTAATCCCCGTTGTCTTCATTTTCTGACTCATGATTTA
1 ATCATTTTCATTT-TCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTA
* ** ** * * * *
3464527 ATCTCAATTGTTTTTCATTTTTTGACTAGTGGTTTCA-TCTCT
65 ATTTTGATCATTTTT-A-TTTTTGACTTGTGATTTAATTC-CG
* * * * * * ** *
3464569 ATCATTTTCATTCTCTGACTCATGGTTTAATCCCTATCCTTTTAATTTTCTGACTCATGATTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTAA
** * * * * * **
3464634 TCCTGATCGTTTTTAGTTTTAGGCTCGTGATTTATTTTTG
66 TTTTGATCATTTTTA-TTTTTGACTTGTGATTTAATTCCG
* * * * * * * * *
3464674 GTCATTTTTATTTTTTGATTCGTGATTTAAT-TTAGATCATTTTCATTTCCTGCCTAGTGGTTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCA-ATCATTTTCATTTTCTGACTTGTGGTTTA
*** * * * * * *
3464738 ATCCCGGTTATTTTCATTTTCTAACTCGTGATTTGATTCCTG
65 ATTTTGATCATTTTTATTTT-TGACTTGTGATTTAATTCC-G
* * * * * **
3464780 -TCATTTTTATTTCTTTGACTCGTGATTTAATAC-CAGTCATTTTCATTTTTTGACTTGTCATTT
1 ATCATTTTCATTT-TCTGACTCATGATTTAAT-CTCAATCATTTTCATTTTCTGACTTGTGGTTT
* * ** * * ** *
3464843 AATTTCGGTTGTTTTCATTTTCTAACTCATGGTTTAA-TCTCG
64 AATTTTGATCATTTTTATTTT-TGACTTGTGATTTAATTC-CG
* ** * *** ** ** * *
3464885 GTCA-TTTCACTTTT-TGACTTGTGGTTTAATCTTTGTTGTTTTACATTTTCCAACTCGTGCTTT
1 ATCATTTTCA-TTTTCTGACTCATGATTTAATCTCAATCATTTT-CATTTTCTGACTTGTGGTTT
* ** * * *
3464948 AATCCTTG-TTGTTTTCATTTTCTGA--TGCATTATTT-ATCCCTG
64 AAT-TTTGATCATTTTTATTTT-TGACTTG--TGATTTAATTCC-G
* * * * * * ** *
3464990 -TCATTTTTATTTTTTGACTCATGATTTAATCCCAGTCATTTTTATTTTTTGACTCATGGTATAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTAA
*** * * *
3465054 TCCCGATCATTTTTCATTTTCTGACTTATCATTTAA-TCTTG
66 TTTTGATCATTTTT-ATTTT-TGACTTGTGATTTAATTC-CG
** * * * * ** ** * * * *
3465095 ATCGCTTTAATTTTCTAACTCGTGGTTTAATC-CTGGTGGTTTTCATTTTTTCACTCGGGGTTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-AATCATTTTCATTTTCTGACTTGTGGTTTA
* ** * * * *
3465159 GTCCCT-ATCATTTTCATTTTTTGACTCGTGCTTTAATTCTG
65 AT-TTTGATCATTTTTA-TTTTTGACTTGTGATTTAATTCCG
* * * * * ** * * *
3465200 GTCATTTTCATTTTTTAACTCGTGTTTTAATCTGGATCCTTTTCATTTTCTAATTCATAATTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGA--C-T--TGT--
** * * * *
3465265 TTTTGATAATTTTCATTATCATTTTTGTTTTCTGACTCGTGGTTTAA-TCTCG
59 GGTT--TAA-TTT--TGATCATTTTTATTTT-TGACTTGTGATTTAATTC-CG
* * * ** * * * * *
3465317 ATCATTTTCATTTTCTAACTCGTGATTTAATTTTGATGATTTTTATTTCTTTGGCTTGTGATTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTCATTT-TCTGACTTGTGGTTTA
* ** * ** *
3465382 ATATAAATCATTTATATTTTTTGACTCATGATTTAA-TCTTG
65 ATTTTGATCATTTTTA-TTTTTGACTTGTGATTTAATTC-CG
* * * * * ** * * ***
3465423 GTCATTTTCATTTTTTAAC-CTATGGTTTAATCCCGGTCATTTTAATTTTCTAACCCATGGTTTA
1 ATCATTTTCATTTTCTGACTC-ATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTA
*** * * *
3465487 ATCCCGATCATTTTCATTTTTTGACTCGTGATTTAA-TCTAG
65 ATTTTGATCATTTTTA-TTTTTGACTTGTGATTTAATTC-CG
* * * * * * * **
3465528 GTCATTTTTATTTTCTGACTCATGGTTTAATCCCAGTCATTTTTATTTTTTGACTCATGGTTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTAA
*** * * **
3465593 TTCCCATTATTTTCATTTTCTGACTTGTGATTTAATTTTG
66 TTTTGATCATTTTTATTTT-TGACTTGTGATTTAATTCCG
* * * * * * * *
3465633 GTCATTTTTATTTCTCTGACTCATGCTTTAGT-TCCCATTATCTTCATTTTCTGACTCGTGGTTT
1 ATCATTTTCATTT-TCTGACTCATGATTTAATCT-CAATCATTTTCATTTTCTGACTTGTGGTTT
** * * ** * *
3465697 AATCCTGATCGTTTTTCATTTTTTGACTGGTGGCTTCA-TCTTG
64 AATTTTGATCATTTTT-A-TTTTTGACTTGTGATTTAATTC-CG
* * * * * * * * * **
3465740 GTCATTTTTATTCTT-TGACTCATGGTTTAATCCCTATCGTTTTAATTTTTTTACTCATGGTTTA
1 ATCATTTTCATT-TTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTA
* * * * * **
3465804 ATCTCGATCATTTTTAGTTTTAGACTCGTAATTTAATTTTG
65 ATTTTGATCATTTTTA-TTTTTGACTTGTGATTTAATTCCG
* * * * * *
3465845 GTCATTTTTATTTTCTAACTCATGATTTAAT-TCTGATCATTTTCA-TTTCTTTACTAGTGGTTT
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-AATCATTTTCATTTTC-TGACTTGTGGTTT
** *
3465908 AATCCTGATCATTTTTATTTTCTAGACTCGTGATTT
64 AATTTTGATCATTTTTATTTT-T-GACTTGTGATTT
3465944 GATTTAAGTC
Statistics
Matches: 2068, Mismatches: 538, Indels: 312
0.71 0.18 0.11
Matches are distributed among these distances:
102 2 0.00
103 14 0.01
104 106 0.05
105 795 0.38
106 855 0.41
107 110 0.05
108 16 0.01
109 5 0.00
111 6 0.00
112 2 0.00
113 6 0.00
114 2 0.00
115 7 0.00
116 8 0.00
117 63 0.03
118 4 0.00
119 33 0.02
120 32 0.02
121 2 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.53
Consensus pattern (104 bp):
ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTCATTTTCTGACTTGTGGTTTAA
TTTTGATCATTTTTATTTTTGACTTGTGATTTAATTCCG
Found at i:3463916 original size:71 final size:71
Alignment explanation
Indices: 3463790--3463967 Score: 200
Period size: 71 Copynumber: 2.5 Consensus size: 71
3463780 CTTGTTTAAC
* ** * * *
3463790 TTTTTTGACTCATGCTTTAATCCCCGTCATTTTTC-TTTTTTGACTCATGATTTAATCACGGTC-
1 TTTTTTGACTCATGGTTTAATCCTGGTCATTTTTCATTGTTTGACTCATCATTTAATCACGATCG
3463853 ATTTTCA
66 ATTTT-A
* ** **
3463860 TTTTTTGACTCATGGTATAATCCTGGTCATTTTTCATTGTTTGACTTGTCATTTAATCTTGATCG
1 TTTTTTGACTCATGGTTTAATCCTGGTCATTTTTCATTGTTTGACTCATCATTTAATCACGATCG
*
3463925 CTTTTA
66 ATTTTA
* *
3463931 TTTTTTGACTCATGGTTTAATCTTGGT-AGTTTTCATT
1 TTTTTTGACTCATGGTTTAATCCTGGTCATTTTTCATT
3463968 TTCTCACCTA
Statistics
Matches: 91, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
70 40 0.44
71 47 0.52
72 4 0.04
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (71 bp):
TTTTTTGACTCATGGTTTAATCCTGGTCATTTTTCATTGTTTGACTCATCATTTAATCACGATCG
ATTTTA
Found at i:3464132 original size:35 final size:35
Alignment explanation
Indices: 3464076--3465281 Score: 520
Period size: 35 Copynumber: 34.3 Consensus size: 35
3464066 TTTTTTAATT
** * * *
3464076 ATCATTTTTGTTTTCTTACTCATGGTTTAATCTCA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
* * *
3464111 ATTATTTTCATTTTTTGACTCATGATTTAATTTCG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
* * **
3464146 ATCATTTTTATTTCTCTGGCTTGTGATTTAATACT-G
1 ATCATTTTCATTT-TCTGACTCATGATTTAAT-CTCG
* * *
3464182 ATCGTTTTCATTTTCTAACTCATAATTTAATCTC-
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
* * *
3464216 AGTCATTTTTATTTTCTAAAC-CATGGTTTAATCTCG
1 A-TCATTTTCATTTTCT-GACTCATGATTTAATCTCG
** * * *
3464252 ATTGTTTTCATTTTCTAACCCATGGTTTAAT-TCTG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-G
* *
3464287 ATCATTTTCATTTTCTGACTCATGATTTAATATGG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
* * * ** *
3464322 GTCATTTTTATTTTTTGACTTGTGGTTTAATC-CTG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-G
* * * * *
3464357 AT-AGTTTTTATTTTTTGACTCGTGATTTAATCCCT
1 ATCA-TTTTCATTTTCTGACTCATGATTTAATCTCG
* *
3464392 ATCATTTTCATTTTCTGACTCATGGTTTAAT-TCCC
1 ATCATTTTCATTTTCTGACTCATGATTTAATCT-CG
* * * * *
3464427 ATCATTTTCATTTTTTAACTCGTGATTTAATTTTG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
* * * *
3464462 GTCATTTTTATTTCTCTGACTCATGGTTTAATCCCCG
1 ATCATTTTCATTT-TCTGACTCATGATTTAAT-CTCG
** * *
3464499 -TTGTCTTCATTTTCTGACTCATGATTTAATCTCA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
** * * * *
3464533 ATTGTTTTTCATTTTTTGACT-AGTGGTTTCATCTCT
1 A-TCATTTTCATTTTCTGACTCA-TGATTTAATCTCG
* * * *
3464569 ATCATTTTCATTCTCTGACTCATGGTTTAATCCCT
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
* *
3464604 ATCCTTTTAATTTTCTGACTCATGATTTAATC-CTG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-G
* * * * * * * *
3464639 ATCGTTTTTAGTTTT-AGGCTCGTGATTTATTTTTG
1 ATCATTTTCA-TTTTCTGACTCATGATTTAATCTCG
* * * * * * *
3464674 GTCATTTTTATTTTTTGATTCGTGATTTAATTTAG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
* * * *
3464709 ATCATTTTCATTTCCTGCCT-AGTGGTTTAATCCCG
1 ATCATTTTCATTTTCTGACTCA-TGATTTAATCTCG
* * * * *
3464744 GTTATTTTCATTTTCTAACTCGTGATTTGAT-TCCTG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCT-C-G
* * *
3464780 -TCATTTTTATTTCTTTGACTCGTGATTTAATAC-C-
1 ATCATTTTCATTT-TCTGACTCATGATTTAAT-CTCG
* ** * *
3464814 AGTCATTTTCATTTTTTGACTTGTCATTTAATTTCG
1 A-TCATTTTCATTTTCTGACTCATGATTTAATCTCG
* ** * *
3464850 GTTGTTTTCATTTTCTAACTCATGGTTTAATCTCG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
* ** * *
3464885 GTCA-TTTCACTTTT-TGACTTGTGGTTTAATCTTTG
1 ATCATTTTCA-TTTTCTGACTCATGATTTAATC-TCG
** ** * * *
3464920 -TTGTTTTACATTTTCCAACTCGTGCTTTAATCCTTG
1 ATCATTTT-CATTTTCTGACTCATGATTTAAT-CTCG
** * *
3464956 -TTGTTTTCATTTTCTGA-TGCATTATTT-ATCCCTG
1 ATCATTTTCATTTTCTGACT-CATGATTTAATCTC-G
* * *
3464990 -TCATTTTTATTTTTTGACTCATGATTTAATC-CC
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
* * * * *
3465023 AGTCATTTTTATTTTTTGACTCATGGTATAATCCCG
1 A-TCATTTTCATTTTCTGACTCATGATTTAATCTCG
* * *
3465059 ATCATTTTTCATTTTCTGACTTATCATTTAATCTTG
1 ATCA-TTTTCATTTTCTGACTCATGATTTAATCTCG
** * * * *
3465095 ATCGCTTTAATTTTCTAACTCGTGGTTTAATC-CTG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-G
* ** * * ** * * * *
3465130 GTGGTTTTCATTTTTTCACTCGGGGTTTAGTCCCT
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
* * *
3465165 ATCATTTTCATTTTTTGACTCGTGCTTTAAT-TCTG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-G
* * * * * *
3465200 GTCATTTTCATTTTTTAACTCGTGTTTTAATCTGG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
* * * * * *
3465235 ATCCTTTTCATTTTCTAATTCATAATTTAATTTTG
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
*
3465270 ATAATTTTCATT
1 ATCATTTTCATT
3465282 ATCATTTTTG
Statistics
Matches: 892, Mismatches: 225, Indels: 108
0.73 0.18 0.09
Matches are distributed among these distances:
33 1 0.00
34 62 0.07
35 657 0.74
36 169 0.19
37 3 0.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (35 bp):
ATCATTTTCATTTTCTGACTCATGATTTAATCTCG
Found at i:3464364 original size:105 final size:106
Alignment explanation
Indices: 3464076--3469574 Score: 782
Period size: 106 Copynumber: 51.8 Consensus size: 106
3464066 TTTTTTAATT
** * * * * * * *
3464076 ATCATTTTTGTTTTCTTACTCATGGTTTAATCTCAATTATTTTCATTTTTTGACTCATGATTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTAA
* * * ** * *
3464141 T-TTCGATCATTTTTATTTCTCTGGCTTGTGATTTAAT-ACTG
66 TCCT-GATCATTTTCATTT-TCTGACTCATGGTTTAATCCCTG
* * * * * *
3464182 ATCGTTTTCATTTTCTAACTCATAATTTAATCTCAGTCATTTTTATTTTCTAAAC-CATGGTTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTT-TTAACTCGTGGTTTA
** * * *
3464246 AT-CTCGATTGTTTTCATTTTCTAACCCATGGTTTAAT-TCTG
65 ATCCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* *** * *
3464287 ATCATTTTCATTTTCTGACTCATGATTTAATATGGGTCATTTTTATTTTTTGACTTGTGGTTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTAA
* * * *
3464352 TCCTGAT-AGTTTTTATTTTTTGACTCGTGATTTAATCCCT-
66 TCCTGATCA-TTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * *
3464392 ATCATTTTCATTTTCTGACTCATGGTTTAAT-TCCCATCATTTTCATTTTTTAACTCGTGATTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCT-CAATCATTTTTATTTTTTAACTCGTGGTTTA
** * * *
3464456 ATTTTGGTCATTTTTATTTCTCTGACTCATGGTTTAATCCCCG
65 ATCCTGATCATTTTCATTT-TCTGACTCATGGTTTAATCCCTG
** * ** * * *
3464499 -TTGTCTTCATTTTCTGACTCATGATTTAATCTCAATTGTTTTTCATTTTTTGACTAGTGGTTTC
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTT-ATTTTTTAACTCGTGGTTTA
*
3464563 ATCTCT-ATCATTTTCATTCTCTGACTCATGGTTTAATCCCT-
65 ATC-CTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * * *
3464604 ATCCTTTTAATTTTCTGACTCATGATTTAATC-CTGATCGTTTTTA-GTTTTAGGCTCGTGATTT
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-AATCATTTTTATTTTTTA-ACTCGTGGTTT
* ** * * * * * * *
3464667 ATTTTTGGTCATTTTTATTTTTTGATTCGTGATTTAAT--TTAG
64 AATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCT-G
* * * * ** * * * *
3464709 ATCATTTTCATTTCCTGCCT-AGTGGTTTAATCCCGGTTATTTTCATTTTCTAACTCGTGATTTG
1 ATCATTTTCATTTTCTGACTCA-TGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTT-
* * * * * * *
3464773 ATTCCTG-TCATTTTTATTTCTTTGACTCGTGATTTAATACCAG
64 AATCCTGATCATTTTCATTT-TCTGACTCATGGTTTAATCCCTG
* ** * * ** ** * * *
3464816 -TCATTTTCATTTTTTGACTTGTCATTTAATTTCGGTTGTTTTCATTTTCTAACTCATGGTTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTAA
* ** **
3464880 T-CTCGGTCA-TTTCACTTTT-TGACTTGTGGTTTAATCTTTG
66 TCCT-GATCATTTTCA-TTTTCTGACTCATGGTTTAATCCCTG
** ** * * * ** * * * **
3464920 -TTGTTTTACATTTTCCAACTCGTGCTTTAATC-C-TTGTTGTTTTCATTTTCTGA-TGCATTAT
1 ATCATTTT-CATTTTCTGACTCATGATTTAATCTCAATCAT-TTTT-ATTTTTTAACT-CGTGGT
* * * *
3464981 TT-ATCCCTG-TCATTTTTATTTTTTGACTCATGATTTAATCCCAG
62 TTAAT-CCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * * * * ** **
3465025 -TCATTTTTATTTTTTGACTCATGGTATAATCCCGATCATTTTTCATTTTCTGACTTATCATTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTT-ATTTTTTAACTCGTGGTTTA
* ** * * *
3465089 ATCTTGATCGCTTTAATTTTCTAACTCGTGGTTTAAT-CCTG
65 ATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* ** * * ** * * * * * * *
3465130 GTGGTTTTCATTTTTTCACTCGGGGTTTAGTCCCTATCATTTTCATTTTTTGACTCGTGCTTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTAA
* * * * * *
3465195 TTCTGGTCATTTTCATTTTTTAACTCGTGTTTTAAT--CTGG
66 TCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCT-G
* * * * * * * *
3465235 ATCCTTTTCATTTTCTAATTCATAATTTAATTTTGATAATTTTCATTATCATTTTTGTTTTCTGA
1 ATCATTTTCATTTTCTGA--C-TCA--TGA--TT--TAA-TCTCA--ATCATTTTTATTTTTTAA
* * * **
3465300 CTCGTGGTTTAAT-CTCGATCATTTTCATTTTCTAACTCGTGATTTAAT-TTTG
54 CTCGTGGTTTAATCCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * ** * * * * * *
3465352 ATGATTTTTATTTCTTTGGCTTGTGATTTAATATAAATCATTTATATTTTTTGACTCATGATTTA
1 ATCATTTTCATTT-TCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTA
* * * *
3465417 ATCTTGGTCATTTTCATTTTTTAAC-CTATGGTTTAATCCC-G
65 ATCCTGATCATTTTCATTTTCTGACTC-ATGGTTTAATCCCTG
* * * * * * * * * *
3465458 GTCATTTTAATTTTCTAACCCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGATTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTAA
* * *
3465523 T-CTAGGTCATTTTTATTTTCTGACTCATGGTTTAATCCCAG
66 TCCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * * * * * *
3465564 -TCATTTTTATTTTTTGACTCATGGTTTAAT-TCCCATTATTTTCATTTTCTGACTTGTGATTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCT-CAATCATTTTTATTTTTTAACTCGTGGTTTA
** * * * *
3465627 ATTTTGGTCATTTTTATTTCTCTGACTCATGCTTTAGTTCCC--
65 ATCCTGATCATTTTCATTT-TCTGACTCATGGTTTA-ATCCCTG
* * * * * * * * *
3465669 ATTATCTTCATTTTCTGACTCGTGGTTTAATC-CTGATCGTTTTTCATTTTTTGACTGGTGGCTT
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-AATCATTTTT-ATTTTTTAACTCGTGGTTT
* * * *
3465733 CATCTTGGTCATTTTTATTCTT-TGACTCATGGTTTAATCCCT-
64 AATCCTGATCATTTTCATT-TTCTGACTCATGGTTTAATCCCTG
* * * * * * * **
3465775 ATCGTTTTAATTTTTTTACTCATGGTTTAATCTCGATCATTTTTA-GTTTTAGACTCGTAATTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTA-ACTCGTGGTTTA
** * * * * *
3465839 ATTTTGGTCATTTTTATTTTCTAACTCATGATTTAAT-TCTG
65 ATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * *
3465880 ATCATTTTCA-TTTCTTTACT-AGTGGTTTAATC-CTGATCATTTTTATTTTCTAGACTCGTGAT
1 ATCATTTTCATTTTC-TGACTCA-TGATTTAATCTC-AATCATTTTTATTTTTTA-ACTCGTGGT
* * * * * ** *
3465942 TTGAT-TTAAGTCATTTTTATTCCTT-TGACTCGTCATTTAATGCC-G
62 TTAATCCTGA-TCATTTTCATT--TTCTGACTCATGGTTTAATCCCTG
* * * * * * * *
3465987 CTCATTGTCATTTT-TGACTCGTGGTTTAAT-TCCAATCATTTTCATTTTTTGACTCATGATTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCT-CAATCATTTTTATTTTTTAACTCGTGGTTTA
* * * * *
3466050 ATCTTGGTCATTTTC-TCGTTT-TGACTTA-GGTTTAAGCCCCG
65 ATCCTGATCATTTTCAT--TTTCTGACTCATGGTTTAATCCCTG
* * * * * * * * * *
3466091 A-CGTTTTACATTTTTTGACTCGTGCTTTAATCCCTATCGTTTTCATTTTTCAA----T-G---C
1 ATCATTTT-CATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTA
* * * * *
3466147 AT--TG-TC-TTTTTATTTTTTGACTCGTGATTTAATCCCAG
65 ATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * ** * * *
3466185 -TCATTTTCATTTTTTGACTCATTATTTAATCCCTATCGCTTTCATTTTTTGACTCATGGTTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTAA
* * * * *
3466249 TCCTGGTGGATTTT-ATTTTCTCACTCAGGGTTCT-GT-CCT-
66 TCCTGAT-CATTTTCATTTTCTGACTCATGGTT-TAATCCCTG
* * * * * * *** * * * * *
3466288 AGTCGTTATCATTTTCTAACTCGTGCTTTAATTTTGGTGATTTTCATTTTTTAACTCATGTTTTG
1 A-TCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTA
* * ** **
3466353 ATCCCGAACATTTTCATTTTCTGACTCATAATTTAAT-TTTG
65 ATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * ** * * * * * * * * *
3466394 ATAATTTTCATTATC-G--TTTTTATTT--TCTGACTCATGGTCTA-ATCTTGA-TCAT--TTTC
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCAT-TTTTATTTTTTAACTCGTGGTTT-
* ** * * *
3466450 ATTTTTTGACTCATGATTT-AATTTC-GA-TCAT-TTTTAATTCTCTG
64 A-ATCCTGA-TCAT--TTTCATTTTCTGACTCATGGTTTAA-TCCCTG
* * * * ** * *
3466494 -GC-TTGTGATTTAATACGGATCGTTTCCATTTTTTAA-CTC-GTGATTTAATCTCAGTTGTTTT
1 ATCATTTTCATTT--T-CTGA-C---T-CATGATTTAATCTCAATCATTT--T-T-A-TT-TTTT
* * * * *
3466555 CATTTTCTAGCCCATGGTTT-ATCTTGATCATTTTCATTTTCTGACCCATGGTTTAATCTC-G
52 -A------A-CTCGTGGTTTAATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * * * * *
3466616 GTCGTTTTCATTTTTTGACTCATGATTTAGTCCCAATCATTTTCATTTTTTCACTCATGATTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTAA
* * *
3466681 TTCT-AGTCTTTTTTATTTCTCTGACTCATGGTTTAAT-CCTCG
66 TCCTGA-TCATTTTCATTT-TCTGACTCATGGTTTAATCCCT-G
** * * ** * * *
3466723 -TTGTCTTCATTTTTTGACTCAT-AGTTTAATC-CTGGTCATTTTTCATTTTCTGACTAGTGGTT
1 ATCATTTTCATTTTCTGACTCATGA-TTTAATCTC-AATCATTTTT-ATTTTTTAACTCGTGGTT
* * *
3466785 TCAT-CTAAGTCATTTTCATTTTCTAACTCATGGTTTAAT--CTG
63 TAATCCTGA-TCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * ** * * * *
3466827 TATCGTTTTAATTTTTTGACTCATGGTTTAATCCTGC--TTGTTTTTAGTTTTAAACTCATGATT
1 -ATCATTTTCATTTTCTGACTCATGATTTAAT-CT-CAATCATTTTTATTTTTTAACTCGTGGTT
* * * * * *
3466890 TAAT-TTAAATTATTTTTATTTTCTGACT-ACTGATTTAAT-TCTG
63 TAATCCT-GATCATTTTCATTTTCTGACTCA-TGGTTTAATCCCTG
** * * * * * * * * *
3466933 ATCGGTTTCA-TTTCTTGACT-AGTTG-TTTAATCTTAGTCACTTTCATTTTCTGACCCATGATT
1 ATCATTTTCATTTTC-TGACTCA--TGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTT
* ** * * * * *
3466995 TGATTTTGATTATTTTTATTTCTTTGACTCATGATTTAATACC-G
63 TAATCCTGATCATTTTCATTT-TCTGACTCATGGTTTAATCCCTG
* * ** ** * * * * *
3467039 ATCGTTTTTATTTT-TGACTTGTGATTTAATCTTTATTATTTTCACTTTTTAACTTGTGGATTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTAA
** ** * ** * *
3467103 TCCCCATTGTTTTACATTTTTTGACTTTTGCTTTAATCTCTG
66 TCCTGATCATTTT-CATTTTCTGACTCATGGTTTAATCCCTG
* * * * * ** * * *
3467145 -TCATTTTCATTTTTTGACGCGTTG-TTTGATCCCTTTGATTTTTATTTTTTGACTCGTGATTTA
1 ATCATTTTCATTTTCTGACTC-ATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTA
** * ** *
3467208 AT-CTCGATTGTTTTCATTTTTTGACTTGTGGTATAAT-CCT-
65 ATCCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * ** *
3467248 AGTCTTTTTTCATTTTTTGACTCATCG-TTTAATC-CTAATCGCTTTTATTTTTTGACTCGTGGT
1 A-TC-ATTTTCATTTTCTGACTCAT-GATTTAATCTC-AATCATTTTTATTTTTTAACTCGTGGT
* * * * * * * * * * *
3467311 TTAATCTTG-GCGGTTTTCTTTTTCTCATTAAGGGGTTAGTCCCAG
62 TTAATCCTGATC-ATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * *** * * * *
3467356 -TCATTTTCATTTTCTAACT--TGTACTTTAATTTTGGTCATTTTCATTTTCTGACTAGTAATTT
1 ATCATTTTCATTTTCTGACTCATG-A-TTTAATCTCAATCATTTTTATTTTTTAACTCG-----T
** * * * * *
3467418 AATTTTGATAATTTTCATTATCATTTTCATTTTCTAACTCGTGGTTTTAATCTC-G
59 --GGTT--TAA---TCCTGATCATTTTCATTTTCTGACTCATGG-TTTAATCCCTG
** * * * * * * * *
3467473 ATGGTTTTCATTTTTTGACTCGTGATTTAATTTTAATCATTTTTATTTCTCTAGCTTGTGATTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTT-TTTAACTCGTGGTTTA
* * * *
3467538 AT-ATCGATCATTTTCATTTTCTGACTCGTGATTTAATCTC-G
65 ATCCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * * * * * * * *
3467579 GTTAATTTCTTTTTTTAAC-CTATGGTTTAATC-CTGATCATTTTCATTTTTTGACTCGAGCTTT
1 ATCATTTTCATTTTCTGACTC-ATGATTTAATCTC-AATCATTTTTATTTTTTAACTCGTG-GTT
* * * * * *
3467642 TAAT-CTTAGTCTTTTTTATTTTTTGACTCATGATTTAATCTC-G
63 TAATCCTGA-TCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * * * * * * * *
3467685 ATCGTTTTTATTTTCTGGCTCGTGGTTTAATTCCCATTGA-TTTCATTTTTTGACTCATGATTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAA-TCTCAATCATTTTTATTTTTTAACTCGTGGTTTA
* * * * * *
3467749 ATTCT-AGTTATTTTTATTTCTTTGAGTCATGGTTCAATCCCTG
65 ATCCTGA-TCATTTTCATTT-TCTGACTCATGGTTTAATCCCTG
** * * * * ** * *
3467792 -TTGTTTTCATTGTCTAACTCA-CAGTTTAATCCCAATTGTTTTTCATTTTTTGACTGGTGGTTT
1 ATCATTTTCATTTTCTGACTCATGA-TTTAATCTCAATCATTTTT-ATTTTTTAACTCGTGGTTT
* * ** * ** * *
3467855 CAT-CTCAGTCATTTTCATCCTCTAACTCATAATTCAATACCTG
64 AATCCTGA-TCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * ** ** * * * *
3467898 -TCATTTTCATTTTTTGACTCATGGTTTAATCTTGATTGTTTTCA-ATTTTAGACTTGTGATTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTA-ACTCGTGGTTTA
* * * * **
3467961 AT-TTCGGTCATTTTTATTTTTCTGACTCATGATTTAAT-TTTG
65 ATCCT-GATCATTTTCA-TTTTCTGACTCATGGTTTAATCCCTG
* * * * * * *
3468003 GTCATTTTCA-TTTCTTGACT-AGTGGTTTAATCT-AGGTCATTTTCATTTTTTGACTCATCGTT
1 ATCATTTTCATTTTC-TGACTCA-TGATTTAATCTCA-ATCATTTTTATTTTTTAACTCGTGGTT
* * * * * * *
3468065 GAATCCTGGTCGTTTTCATTTTTTGACTTAAGGTTTAATCTC-G
63 TAATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * ** * * * *
3468108 GTCATTGTCACTTTT-TGACTTATGGTTTAATC-CTTATTGTTTTACATTTTCTAACTCATGCTT
1 ATCATTTTCA-TTTTCTGACTCATGATTTAATCTC-AATCATTTT-TATTTTTTAACTCGTGGTT
* * *
3468171 TAATCCCTG-TCATTTTCATTTTCTGACACATTGTTTAATCCTTG
63 TAAT-CCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * ** * *
3468215 -TCATTTTTATTTTTTGACTCATGTTTTAATCTCGGTCATTTTTATTTTTTGACTCATGGTTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTT-A
* * **
3468279 ACCCT-ATCATTTTTCATTTTCTGAGTCATCATTTAATCCC-G
65 ATCCTGATCA-TTTTCATTTTCTGACTCATGGTTTAATCCCTG
** * *** ** ** * * *
3468320 ATCGCTTTCATTTTCTGACTCATGGTTTAATCTTGGTGGTTTTCGTTTTCTCACTTAG-GGTTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAAC-TCGTGGTTTA
* ** * * ** * * *
3468384 GTCCCAATCATTGTCATTTTCTAACTTGTGCTTTAATTCC-A
65 ATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * * ** * * * * * **
3468425 ATCACTTTAATTTT-TAACTCACGTTTTGATCTCGGTCACTTTGATTTTCTGACTTGTAATTTAA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTAA
** ** *
3468489 TTATGGTAATTTTCATTATTTTTTTCATTTTCTGACTTGTGGTTTAATCTCT-
66 TCCT-G--A---TC---A---TTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * * * ** * *
3468541 AT-AGTTTTTATTTTTTGACTCGTGATTTACTTTCGATCATTTTTATTTCTCTGGCTTGTGATTT
1 ATCA-TTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTT-TTTAACTCGTGGTTT
* * * * * *
3468605 AAT-ATCGAT-AGTTTTCATTTTTTAACTCGTGATTTAAT--CTC
64 AATCCT-GATCA-TTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * * * *
3468646 AACTATTTTCATTTTCTAAAC-CATGGTTTAATC-CTAATGATTTTCATTTTCTAACCCATGGTT
1 ATC-ATTTTCATTTTCT-GACTCATGATTTAATCTC-AATCATTTTTATTTTTTAACTCGTGGTT
* ** * **
3468709 TAATCCTGATCATTTTCATTTTTTGACTTGTGATTTAATCCAAG
63 TAATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * * ****
3468753 -TCATTTTTATTTTCTGACTCGA-GGTTTAATCTTAGTCTTTTTTATTTTTTTACTCACAATTTA
1 ATCATTTTCATTTTCTGACTC-ATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTA
* * *
3468816 ATCTTGATCGTTTTCATTTTTTGACTCATGGTTTAATTCCC--
65 ATCCTGATCATTTTCATTTTCTGACTCATGGTTTAA-TCCCTG
* * * * * *
3468857 ATCAATTTCATTTTCTGACTCATGATTTAAT-TCTAGTTATTTTTATTTCTCTAAGTCATGGTTT
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTC-AATCATTTTTATTT-TTTAACTCGTGGTTT
** * * *
3468921 AATCCTG-TTGTCTTCATTTTCTAACTCGTGGTTTAATCCC-G
64 AATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
** * * ** * * ** * * *
3468962 ATTGTTTTTCATTTTTTGATTGGTGGTTTCATCTCGGTC-TTTTTCATTCTCTAACTCATGGTTT
1 A-TCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTT-ATTTTTTAACTCGTGGTTT
* * * *
3469026 AATACCT-ATCATTTTGATTTTTTGACTTATGGTTTAAT-CTTG
64 AAT-CCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
* ** * * ** * *** * * *
3469068 GTTGTTTTTAGTTTT-AGACTTGTGATTTAATTTTGGTCATTTTTATTTTTTTGACTCATGATTT
1 ATCATTTTCA-TTTTCTGACTCATGATTTAATCTCAATCATTTTTA-TTTTTTAACTCGTGGTTT
* *
3469132 AATTCT-AGTCGTTTTCA-TTTCTTGACT-AGTGGTTTAAT-CCTG
64 AATCCTGA-TCATTTTCATTTTC-TGACTCA-TGGTTTAATCCCTG
* * * * * * * *
3469174 GTCATTTTCATTTTTTGACTTATCG-TTGAATCTCGAT-ATTTTTCATTTTTTGACACGTGATTT
1 ATCATTTTCATTTTCTGACTCAT-GATTTAATCTCAATCATTTTT-ATTTTTTAACTCGTGGTTT
* * ** *
3469237 AATCTTGGTCATTTTCACTTTT-TGACTTGTGGTTTAA-CCCTT
64 AATCCTGATCATTTTCA-TTTTCTGACTCATGGTTTAATCCCTG
** * * * * * * * * *
3469279 ATTGTTTTACATTTTCTAACTCATGCTTTAATCCCTATCATTTTCATTTTCTGA-TGCATTGTTT
1 ATCATTTT-CATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACT-CGTGGTTT
* * * *
3469343 AATCCTTATCACTTTT-ATTTTTTGACTCATGTTTTAAT-CTTG
64 AATCCTGATCA-TTTTCATTTTCTGACTCATGGTTTAATCCCTG
* * * * * * * * ** * *
3469385 GTCATTTTTATTTTTTAACTCATGGTATAATCCCTATTGTTTTTCATTTTTTAACTCATCGTTTA
1 ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTT-ATTTTTTAACTCGTGGTTTA
* ** * *
3469450 ATCCCGATCGCTTTCATTTTCTGAGTCAAGGTTTAAT-CCT-
65 ATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
** * * * * * * * * * * *
3469490 AGTGGTTTTCATTTTCTCACTCAGGGTTTAGTCCCAGTTATTTTCATTTTCTAACTTGTGCTTTA
1 A-TCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTA
** *
3469555 ATTATGATCATTTTAATTTT
65 ATCCTGATCATTTTCATTTT
3469575 TTAACTCGCA
Statistics
Matches: 3987, Mismatches: 1064, Indels: 685
0.70 0.19 0.12
Matches are distributed among these distances:
92 3 0.00
93 48 0.01
94 18 0.00
95 2 0.00
97 6 0.00
98 12 0.00
99 12 0.00
100 18 0.00
101 11 0.00
102 10 0.00
103 19 0.00
104 171 0.04
105 1519 0.38
106 1551 0.39
107 229 0.06
108 16 0.00
109 12 0.00
110 8 0.00
111 3 0.00
112 12 0.00
113 5 0.00
114 7 0.00
115 8 0.00
116 46 0.01
117 115 0.03
118 66 0.02
119 7 0.00
120 6 0.00
121 7 0.00
122 9 0.00
123 13 0.00
124 15 0.00
126 3 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (106 bp):
ATCATTTTCATTTTCTGACTCATGATTTAATCTCAATCATTTTTATTTTTTAACTCGTGGTTTAA
TCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCCTG
Found at i:3465331 original size:35 final size:35
Alignment explanation
Indices: 3465282--3466064 Score: 383
Period size: 35 Copynumber: 22.3 Consensus size: 35
3465272 AATTTTCATT
**
3465282 ATCATTTTTGTTTTCTGACTCGTGGTTTAATCTCG
1 ATCATTTTCATTTTCTGACTCGTGGTTTAATCTCG
* * * *
3465317 ATCATTTTCATTTTCTAACTCGTGATTTAATTTTG
1 ATCATTTTCATTTTCTGACTCGTGGTTTAATCTCG
* * * * * * * **
3465352 ATGATTTTTATTTCTTTGGCTTGTGATTTAATATAA
1 ATCATTTTCATTT-TCTGACTCGTGGTTTAATCTCG
* * * *
3465388 ATCATTTAT-ATTTTTTGACTCATGATTTAATCTTG
1 ATCATTT-TCATTTTCTGACTCGTGGTTTAATCTCG
* * * * *
3465423 GTCATTTTCATTTTTTAAC-CTATGGTTTAATCCCG
1 ATCATTTTCATTTTCTGACTC-GTGGTTTAATCTCG
* * * * * *
3465458 GTCATTTTAATTTTCTAACCCATGGTTTAATCCCG
1 ATCATTTTCATTTTCTGACTCGTGGTTTAATCTCG
* * *
3465493 ATCATTTTCATTTTTTGACTCGTGATTTAATCTAG
1 ATCATTTTCATTTTCTGACTCGTGGTTTAATCTCG
* * * *
3465528 GTCATTTTTATTTTCTGACTCATGGTTTAATC-CC
1 ATCATTTTCATTTTCTGACTCGTGGTTTAATCTCG
* * * *
3465562 AGTCATTTTTATTTTTTGACTCATGGTTTAAT-TCCC
1 A-TCATTTTCATTTTCTGACTCGTGGTTTAATCT-CG
* * * * *
3465598 ATTATTTTCATTTTCTGACTTGTGATTTAATTTTG
1 ATCATTTTCATTTTCTGACTCGTGGTTTAATCTCG
* * * * * *
3465633 GTCATTTTTATTTCTCTGACTCATGCTTTAGT-TCCC
1 ATCATTTTCATTT-TCTGACTCGTGGTTTAATCT-CG
* *
3465669 ATTATCTTCATTTTCTGACTCGTGGTTTAATC-CTG
1 ATCATTTTCATTTTCTGACTCGTGGTTTAATCTC-G
* * * * * *
3465704 ATCGTTTTTCATTTTTTGACTGGTGGCTTCATCTTG
1 ATC-ATTTTCATTTTCTGACTCGTGGTTTAATCTCG
* * * * *
3465740 GTCATTTTTATTCTT-TGACTCATGGTTTAATCCCT
1 ATCATTTTCATT-TTCTGACTCGTGGTTTAATCTCG
* * * * *
3465775 ATCGTTTTAATTTTTTTACTCATGGTTTAATCTCG
1 ATCATTTTCATTTTCTGACTCGTGGTTTAATCTCG
* * ** * *
3465810 ATCATTTTTAGTTTT-AGACTCGTAATTTAATTTTG
1 ATCATTTTCA-TTTTCTGACTCGTGGTTTAATCTCG
* * * * *
3465845 GTCATTTTTATTTTCTAACTCATGATTTAAT-TCTG
1 ATCATTTTCATTTTCTGACTCGTGGTTTAATCTC-G
* *
3465880 ATCATTTTCA-TTTCTTTACTAGTGGTTTAATC-CTG
1 ATCATTTTCATTTTC-TGACTCGTGGTTTAATCTC-G
* * * **
3465915 ATCATTTTTATTTTCTAGACTCGTGATTTGAT-TTA
1 ATCATTTTCATTTTCT-GACTCGTGGTTTAATCTCG
* **
3465950 AGTCATTTTTATTCCTT-TGACTCGTCATTTAATGC-CG
1 A-TCATTTTCATT--TTCTGACTCGTGGTTTAAT-CTCG
* * *
3465987 CTCATTGTCATTTT-TGACTCGTGGTTTAAT-TCCA
1 ATCATTTTCATTTTCTGACTCGTGGTTTAATCT-CG
* * * *
3466021 ATCATTTTCATTTTTTGACTCATGATTTAATCTTG
1 ATCATTTTCATTTTCTGACTCGTGGTTTAATCTCG
*
3466056 GTCATTTTC
1 ATCATTTTC
3466065 TCGTTTTGAC
Statistics
Matches: 573, Mismatches: 141, Indels: 68
0.73 0.18 0.09
Matches are distributed among these distances:
34 43 0.08
35 392 0.68
36 134 0.23
37 2 0.00
38 2 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (35 bp):
ATCATTTTCATTTTCTGACTCGTGGTTTAATCTCG
Found at i:3465671 original size:71 final size:70
Alignment explanation
Indices: 3465563--3465699 Score: 211
Period size: 71 Copynumber: 1.9 Consensus size: 70
3465553 TTTAATCCCA
* * * *
3465563 GTCATTTTTATTTTTTGACTCATGGTTTAATTCCCATTATTTTCATTTTCTGACTTGTGATTTAA
1 GTCATTTTTATTTTCTGACTCATGCTTTAATTCCCATTATCTTCATTTTCTGACTCGTGATTTAA
3465628 TTTTG
66 TTTTG
* *
3465633 GTCATTTTTATTTCTCTGACTCATGCTTTAGTTCCCATTATCTTCATTTTCTGACTCGTGGTTTA
1 GTCATTTTTATTT-TCTGACTCATGCTTTAATTCCCATTATCTTCATTTTCTGACTCGTGATTTA
3465698 AT
65 AT
3465700 CCTGATCGTT
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
70 13 0.22
71 47 0.78
ACGTcount: A:0.18, C:0.17, G:0.12, T:0.54
Consensus pattern (70 bp):
GTCATTTTTATTTTCTGACTCATGCTTTAATTCCCATTATCTTCATTTTCTGACTCGTGATTTAA
TTTTG
Found at i:3466011 original size:106 final size:104
Alignment explanation
Indices: 3465388--3466140 Score: 575
Period size: 105 Copynumber: 7.1 Consensus size: 104
3465378 TTTAATATAA
* * * * *
3465388 ATCATTTAT-ATTTTTTGACTCATGATTTAATCTT-GGTCATTTTCATTTTTTAAC-CTATGGTT
1 ATCATTT-TCATTTTTTGACTCGTGATTTAAT-TTAGGTCATTTTTATTCTTTGACTC-ATGATT
* * * * * *
3465450 TAATCCCGGTCATTTTAATTTTCTAACCCATGGTTTAATCCCG
63 TAATCCCGATCATTTTCATTTT-TGACTCGTGGTTTAATCCTG
* *
3465493 ATCATTTTCATTTTTTGACTCGTGATTTAATCTAGGTCATTTTTATT-TTCTGACTCATGGTTTA
1 ATCATTTTCATTTTTTGACTCGTGATTTAATTTAGGTCATTTTTATTCTT-TGACTCATGATTTA
* * *
3465557 ATCCC-AGTCATTTTTATTTTTTGACTCATGGTTTAATTCC-C
65 ATCCCGA-TCATTTTCA-TTTTTGACTCGTGGTTTAA-TCCTG
* * * * * *
3465598 ATTATTTTCATTTTCTGACTTGTGATTTAATTTTGGTCATTTTTATTTCTCTGACTCATGCTTTA
1 ATCATTTTCATTTTTTGACTCGTGATTTAATTTAGGTCATTTTTA-TTCTTTGACTCATGATTTA
* * *
3465663 GTTCCC-ATTATCTTCATTTTCTGACTCGTGGTTTAATCCTG
65 -ATCCCGATCATTTTCATTTT-TGACTCGTGGTTTAATCCTG
* * ** * *
3465704 ATCGTTTTTCATTTTTTGACTGGTGGCTTCATCTT-GGTCATTTTTATTCTTTGACTCATGGTTT
1 ATC-ATTTTCATTTTTTGACTCGTGATTTAAT-TTAGGTCATTTTTATTCTTTGACTCATGATTT
* * * * *
3465768 AATCCCTATCGTTTTAATTTTTTTACTCATGGTTTAAT-CTCG
64 AATCCCGATCATTTTCA-TTTTTGACTCGTGGTTTAATCCT-G
* * * * * *
3465810 ATCATTTTTAGTTTTAGACTCGTAATTTAATTTTGGTCATTTTTATT-TTCTAACTCATGATTTA
1 ATCATTTTCATTTTTTGACTCGTGATTTAATTTAGGTCATTTTTATTCTT-TGACTCATGATTTA
* * * *
3465874 ATTCTGATCATTTTCATTTCTTTACTAGTGGTTTAATCCTG
65 ATCCCGATCATTTTCATTT-TTGACTCGTGGTTTAATCCTG
* * * * * *
3465915 ATCATTTTTATTTTCTAGACTCGTGATTTGATTTAAGTCATTTTTATTCCTTTGACTCGTCATTT
1 ATCATTTTCATTTT-TTGACTCGTGATTTAATTTAGGTCATTTTTATT-CTTTGACTCATGATTT
* * * *
3465980 AATGCCGCTCATTGTCATTTTTGACTCGTGGTTTAATTCC-A
64 AATCCCGATCATTTTCATTTTTGACTCGTGGTTTAA-TCCTG
* ** * *
3466021 ATCATTTTCATTTTTTGACTCATGATTTAATCTT-GGTCATTTTCTCGT-TTTGACTTA-GGTTT
1 ATCATTTTCATTTTTTGACTCGTGATTTAAT-TTAGGTCATTTT-TATTCTTTGACTCATGATTT
* * *
3466083 AAGCCCCGA-CGTTTTACATTTTTTGACTCGTGCTTTAATCCCT-
64 AA-TCCCGATCATTTT-CA-TTTTTGACTCGTGGTTTAAT-CCTG
*
3466126 ATCGTTTTCATTTTT
1 ATCATTTTCATTTTT
3466141 CAATGCATTG
Statistics
Matches: 527, Mismatches: 89, Indels: 64
0.77 0.13 0.09
Matches are distributed among these distances:
103 9 0.02
104 24 0.05
105 270 0.51
106 148 0.28
107 72 0.14
108 4 0.01
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.51
Consensus pattern (104 bp):
ATCATTTTCATTTTTTGACTCGTGATTTAATTTAGGTCATTTTTATTCTTTGACTCATGATTTAA
TCCCGATCATTTTCATTTTTGACTCGTGGTTTAATCCTG
Found at i:3466138 original size:35 final size:34
Alignment explanation
Indices: 3465281--3467316 Score: 365
Period size: 35 Copynumber: 58.0 Consensus size: 34
3465271 TAATTTTCAT
** *
3465281 TATCATTTTTGTTTTCTGACTCGTGGTTTAATCTC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATC-C
* * * * **
3465316 GATCATTTTCATTTTCTAACTCGTGATTTAATTT
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * *
3465350 TGATGATTTTTATTTCTTTGGCTTGTGATTTAAT-A
1 T-ATCATTTTCATTT-TTTGACTCGTGGTTTAATCC
* * *
3465385 TAAATCATTTAT-ATTTTTTGACTCATGATTTAATCT
1 T--ATCATTT-TCATTTTTTGACTCGTGGTTTAATCC
* * *
3465421 TGGTCATTTTCATTTTTTAAC-CTATGGTTTAATCCC
1 T-ATCATTTTCATTTTTTGACTC-GTGGTTTAAT-CC
** * * * * *
3465457 GGTCATTTTAATTTTCTAACCCATGGTTTAATCCC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAAT-CC
* *
3465492 GATCATTTTCATTTTTTGACTCGTGATTTAAT-C
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
3465525 TAGGTCATTTTTATTTTCTGACTCATGGTTTAATCC
1 TA--TCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
3465561 CAGTCATTTTTATTTTTTGACTCATGGTTTAATTCC
1 TA-TCATTTTCATTTTTTGACTCGTGGTTTAA-TCC
* * * * * **
3465597 CATTATTTTCATTTTCTGACTTGTGATTTAATTT
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * *
3465631 TGGTCATTTTTATTTCTCTGACTCATGCTTTAGTTCC
1 T-ATCATTTTCATTT-TTTGACTCGTGGTTTA-ATCC
* * * *
3465668 CATTATCTTCATTTTCTGACTCGTGGTTTAATCC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * *
3465702 TGATCGTTTTTCATTTTTTGACTGGTGGCTTCATCT
1 T-ATC-ATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * *
3465738 TGGTCATTTTTATTCTTTGACTCATGGTTTAATCCC
1 T-ATCATTTTCATTTTTTGACTCGTGGTTTAAT-CC
* * * *
3465774 TATCGTTTTAATTTTTTTACTCATGGTTTAATCTC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATC-C
* * * * ** **
3465809 GATCATTTTTAGTTTTAGACTCGTAATTTAATTT
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * * *
3465843 TGGTCATTTTTATTTTCTAACTCATGATTTAATTC
1 T-ATCATTTTCATTTTTTGACTCGTGGTTTAATCC
*
3465878 TGATCATTTTCATTTCTTT-ACTAGTGGTTTAATCC
1 T-ATCATTTTCATTT-TTTGACTCGTGGTTTAATCC
* * * * *
3465913 TGATCATTTTTATTTTCTAGACTCGTGATTTGAT-T
1 T-ATCATTTTCATTTT-TTGACTCGTGGTTTAATCC
* * **
3465948 TAAGTCATTTTTATTCCTTTGACTCGTCATTTAATGCC
1 T-A-TCATTTTCATT-TTTTGACTCGTGGTTTAAT-CC
** *
3465986 GCTCATTGTCA-TTTTTGACTCGTGGTTTAATTCC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAA-TCC
* * * *
3466020 AATCATTTTCATTTTTTGACTCATGATTTAATCT
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
3466054 TGGTCATTTTC-TCGTTTTGACT--TAGGTTTAAGCCCC
1 T-ATCATTTTCAT-TTTTTGACTCGT-GGTTTAA--TCC
* * *
3466090 GA-CGTTTTACATTTTTTGACTCGTGCTTTAATCCC
1 TATCATTTT-CATTTTTTGACTCGTGGTTTAAT-CC
* ** *
3466125 TATCGTTTTCA-TTTTT--C-AAT-G---CAT--
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
3466149 TGTC-TTTTTATTTTTTGACTCGTGATTTAATCC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * **
3466182 CAGTCATTTTCATTTTTTGACTCATTATTTAATCCC
1 TA-TCATTTTCATTTTTTGACTCGTGGTTTAAT-CC
** *
3466218 TATCGCTTTCATTTTTTGACTCATGGTTTAATCC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * *
3466252 TGGTGGATTTT-ATTTTCTCACTCAG-GGTTCT-GTCC
1 T-AT-CATTTTCATTTTTTGACTC-GTGGTT-TAATCC
* * * * * **
3466287 TAGTCGTTATCATTTTCTAACTCGTGCTTTAATTT
1 TA-TCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * *
3466322 TGGTGATTTTCATTTTTTAACTCATGTTTTGATCCC
1 T-ATCATTTTCATTTTTTGACTCGTGGTTTAAT-CC
* * * * ** **
3466358 GAACATTTTCATTTTCTGACTCATAATTTAATTT
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * *
3466392 TGATAATTTTCA----TT-A-TCGT-TTTTATTTTC
1 T-ATCATTTTCATTTTTTGACTCGTGGTTTA-ATCC
** * * * ** * *
3466421 TGACTCATGGTC-TAATCTTGATCATTTTCATTTTTTGACTCA
1 T-A-TCATTTTCAT-TTTTTGA-C----TCGTGGTTT-AATCC
* * * *
3466463 TGATTTAATTTCGATCATTTTTAATTCTCTGGCTTGTGATTTAATACG
1 T-A-TCATTTTC-AT--TTTTTGA--CTC--G--TG-G-TTTAAT-CC
* * * * *
3466511 GATCGTTTCCATTTTTTAACTCGTGATTTAAT-C
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
** * * * *
3466544 TCAGTTGTTTTCATTTTCT-AGCCCATGGTTT-ATCT
1 T-A-TCATTTTCATTTTTTGA-CTCGTGGTTTAATCC
* * *
3466579 TGATCATTTTCATTTTCTGACCCATGGTTTAATCTC
1 T-ATCATTTTCATTTTTTGACTCGTGGTTTAATC-C
** * * * *
3466615 GGTCGTTTTCATTTTTTGACTCATGATTTAGTCCC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAAT-CC
* * * * *
3466650 AATCATTTTCATTTTTTCACTCATGATTTAATTC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * *
3466684 TAGTCTTTTTTATTTCTCTGACTCATGGTTTAATCC
1 TA-TCATTTTCATTT-TTTGACTCGTGGTTTAATCC
* ** * * *
3466720 TCGTTGTCTTCATTTTTTGACTCATAGTTTAATCC
1 T-ATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * *
3466755 TGGTCATTTTTCATTTTCTGACTAGTGGTTTCAT-C
1 T-ATCA-TTTTCATTTTTTGACTCGTGGTTTAATCC
* * * *
3466790 TAAGTCATTTTCATTTTCTAACTCATGGTTTAATCTG
1 T-A-TCATTTTCATTTTTTGACTCGTGGTTTAATC-C
* * *
3466827 TATCGTTTTAATTTTTTGACTCATGGTTTAATCC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* ** * * ** * * *
3466861 TGCTTGTTTTTAGTTTTAAACTCATGATTTAAT-T
1 T-ATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * *
3466895 TAAATTATTTTTATTTTCTGACTAC-TGATTTAATTC
1 T--ATCATTTTCATTTTTTGACT-CGTGGTTTAATCC
** * * * *
3466931 TGATCGGTTTCATTTCTTGACTAGTTGTTTAATCT
1 T-ATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * * **
3466966 TAGTCACTTTCATTTTCTGACCCATGATTTGATTT
1 TA-TCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * * *
3467001 TGATTATTTTTATTTCTTTGACTCATGATTTAATACC
1 T-ATCATTTTCATTT-TTTGACTCGTGGTTTAAT-CC
* * * * * *
3467038 GATCGTTTTTA-TTTTTGACTTGTGATTTAATCTT
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATC-C
* * * * *
3467072 TATTATTTTCACTTTTTAACTTGTGGATTAATCCC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAAT-CC
* ** ** *
3467107 CATTGTTTTACATTTTTTGACTTTTGCTTTAATCTC
1 TATCATTTT-CATTTTTTGACTCGTGGTTTAATC-C
* * * *
3467143 TGTCATTTTCATTTTTTGACGCGTTGTTTGATCCC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAAT-CC
* * * *
3467178 TTTGATTTTTATTTTTTGACTCGTGATTTAATCTC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATC-C
* ** * *
3467213 GATTGTTTTCATTTTTTGACTTGTGGTATAATCC
1 TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
3467247 TAGTCTTTTTTCATTTTTTGACTCATCGTTTAATCC
1 TA-TC-ATTTTCATTTTTTGACTCGTGGTTTAATCC
*
3467283 TAATCGCTTTT-ATTTTTTGACTCGTGGTTTAATC
1 T-ATC-ATTTTCATTTTTTGACTCGTGGTTTAATC
3467317 TTGGCGGTTT
Statistics
Matches: 1461, Mismatches: 414, Indels: 252
0.69 0.19 0.12
Matches are distributed among these distances:
23 5 0.00
24 8 0.01
26 1 0.00
27 3 0.00
28 4 0.00
29 8 0.01
30 6 0.00
31 4 0.00
32 1 0.00
33 4 0.00
34 122 0.08
35 950 0.65
36 286 0.20
37 8 0.01
39 1 0.00
41 6 0.00
42 14 0.01
43 8 0.01
44 1 0.00
45 7 0.00
46 7 0.00
47 3 0.00
48 4 0.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (34 bp):
TATCATTTTCATTTTTTGACTCGTGGTTTAATCC
Found at i:3466419 original size:47 final size:47
Alignment explanation
Indices: 3466363--3466452 Score: 126
Period size: 47 Copynumber: 1.9 Consensus size: 47
3466353 ATCCCGAACA
* *
3466363 TTTTCATTTTCTGACTCATAATTTAATTTTGATAATTTTCATTATCG
1 TTTTCATTTTCTGACTCATAATCTAATCTTGATAATTTTCATTATCG
* ** *
3466410 TTTTTATTTTCTGACTCATGGTCTAATCTTGATCATTTTCATT
1 TTTTCATTTTCTGACTCATAATCTAATCTTGATAATTTTCATT
3466453 TTTTGACTCA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 37 1.00
ACGTcount: A:0.22, C:0.14, G:0.08, T:0.56
Consensus pattern (47 bp):
TTTTCATTTTCTGACTCATAATCTAATCTTGATAATTTTCATTATCG
Found at i:3466732 original size:71 final size:69
Alignment explanation
Indices: 3466410--3466894 Score: 245
Period size: 71 Copynumber: 6.9 Consensus size: 69
3466400 TTCATTATCG
* * ** *
3466410 TTTTT-ATTTTCTGACTCATGGTCTAATCTTGATCATTTTCATTTTTTGACTCATGATTTAATT-
1 TTTTTAATTTTCTGACTCATGGTTTAATCCTG-TTGTTTTCATTTTTTAACTCATGATTTAATTC
*
3466473 TCGATC
65 TAG-TC
* * ** * * * * * *
3466479 ATTTTTAATTCTCTGGCTTGTGATTTAATACGGATCGTTTCCATTTTTTAACTCGTGATTTAA-T
1 -TTTTTAATTTTCTGACTCATGGTTTAATCCTG-TTGTTTTCATTTTTTAACTCATGATTTAATT
3466543 CTCAGT-
64 CT-AGTC
* * * ** * * * *
3466549 TGTTTTCATTTTCT-AGCCCATGGTTT-ATCTTGATCATTTTCATTTTCTGACCCATGGTTTAA-
1 T-TTTTAATTTTCTGA-CTCATGGTTTAATCCTG-TTGTTTTCATTTTTTAACTCATGATTTAAT
*
3466611 TCTCGGTC
63 TCT-AGTC
* * * * * ** ** *
3466619 GTTTTCATTTTTTGACTCATGATTTAGTCCCAATCATTTTCATTTTTTCACTCATGATTTAATTC
1 TTTTTAATTTTCTGACTCATGGTTTAAT-CCTGTTGTTTTCATTTTTTAACTCATGATTTAATTC
3466684 TAGTC
65 TAGTC
* * *
3466689 TTTTTTATTTCTCTGACTCATGGTTTAATCCTCGTTGTCTTCATTTTTTGACTCAT-AGTTTAAT
1 TTTTTAATTT-TCTGACTCATGGTTTAATCCT-GTTGTTTTCATTTTTTAACTCATGA-TTTAAT
* *
3466753 CCTGGTC
63 TCTAGTC
* * ** * *
3466760 ATTTTTCATTTTCTGACT-AGTGGTTTCAT-CTAAGTCATTTTCATTTTCTAACTCATGGTTTAA
1 -TTTTTAATTTTCTGACTCA-TGGTTTAATCCT--GTTGTTTTCATTTTTTAACTCATGATTTAA
*
3466823 TCTGTA-TC
62 T-TCTAGTC
* * * * *
3466831 GTTTTAATTTTTTGACTCATGGTTTAATCCTGCTTGTTTTTAGTTTTAAACTCATGATTTAATT
1 TTTTTAATTTTCTGACTCATGGTTTAATCCTG-TTGTTTTCATTTTTTAACTCATGATTTAATT
3466895 TAAATTATTT
Statistics
Matches: 313, Mismatches: 81, Indels: 43
0.72 0.19 0.10
Matches are distributed among these distances:
69 54 0.17
70 111 0.35
71 137 0.44
72 11 0.04
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (69 bp):
TTTTTAATTTTCTGACTCATGGTTTAATCCTGTTGTTTTCATTTTTTAACTCATGATTTAATTCT
AGTC
Found at i:3466861 original size:106 final size:105
Alignment explanation
Indices: 3466407--3470333 Score: 518
Period size: 106 Copynumber: 37.0 Consensus size: 105
3466397 ATTTTCATTA
* * * * * *
3466407 TCGTTTTTATTTTCTGACTCATGGTCTAATCTTGATCATTTTCATTTTTTGACTCATGATTTAAT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTCATTTTCTCACTCATGATTTAAT
* * * * ** * * *
3466472 T-TCGATCATTTTTAATTCTCTGGCTTGTGATTTAATAC-GGA
66 TCTAG-TCA-TTTTCATTTTCTGACTCATGGTTTAAT-CTCGT
* * * * * ** * *
3466513 TCGTTTCCATTTTTTAACTCGTGATTTAAT-CTCAGTTGTTTTCATTTTCT-AGCCCATGGTTT-
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGA-TCATTTTCATTTTCTCA-CTCATGATTTA
* * *
3466575 A-TCTTGATCATTTTCATTTTCTGACCCATGGTTTAATCTCGG
64 ATTCTAG-TCATTTTCATTTTCTGACTCATGGTTTAATCTCGT
* * ** *
3466617 TCGTTTTCATTTTTTGACTCATGATTTAGTCCCAATCATTTTCATTTTTTCACTCATGATTTAAT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTCATTTTCTCACTCATGATTTAAT
* *
3466682 TCTAGTCTTTTTTATTTCTCTGACTCATGGTTTAATCCTCGT
66 TCTAGTCATTTTCATTT-TCTGACTCATGGTTTAAT-CTCGT
* * * * * *
3466724 T-GTCTTCATTTTTTGACTCATAGTTTAATCCTGGTCATTTTTCATTTTCTGACT-AGTGGTTTC
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCA-TTTTCATTTTCTCACTCA-TGATTTA
*
3466787 A-TCTAAGTCATTTTCATTTTCTAACTCATGGTTTAATCT-GT
64 ATTCT-AGTCATTTTCATTTTCTGACTCATGGTTTAATCTCGT
* * ** * **
3466828 ATCGTTTTAATTTTTTGACTCATGGTTTAATCCTGCTTGTTTTTAGTTTT-AAACTCATGATTTA
1 -TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTCA-TTTTCTCACTCATGATTTA
* * * * *
3466892 ATT-TAAATTATTTTTATTTTCTGACT-ACTGATTTAAT-TCTGA
64 ATTCT-AGTCATTTTCATTTTCTGACTCA-TGGTTTAATCTC-GT
* * * * * * * *
3466934 TCGGTTTCATTTCTTGACT-AGTTGTTTAAT-CTTAGTCACTTTCATTTTCTGACCCATGATTTG
1 TCGTTTTCATTTTTTGACTCA-TGGTTTAATCCTGA-TCATTTTCATTTTCTCACTCATGATTTA
* * * * * *
3466997 ATT-TTGATTATTTTTATTTCTTTGACTCATGATTTAATAC-CGA
64 ATTCTAG-TCATTTTCATTT-TCTGACTCATGGTTTAAT-CTCGT
* ** * * * * * **
3467040 TCGTTTTTA-TTTTTGACTTGTGATTTAATCTTTATTATTTTCACTTTT-TAACTTGTGGA-TTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTCA-TTTTCTCACTCAT-GATTTA
* * ** * ** *
3467102 ATCCCCA-TTGTTTTACATTTTTTGACTTTTGCTTTAATCTC-T
64 AT-TCTAGTCATTTT-CATTTTCTGACTCATGGTTTAATCTCGT
* * * * * * * * * * *
3467144 GTCATTTTCATTTTTTGACGCGTTGTTTGATCCCT-TTGATTTTTATTTTTTGACTCGTGATTTA
1 -TCGTTTTCATTTTTTGACTCATGGTTTAAT-CCTGATCATTTTCATTTTCTCACTCATGATTTA
* ** * ** * *
3467208 A-TCTCGATTGTTTTCATTTTTTGACTTGTGGTATAATCCTAG-
64 ATTCTAG-TCATTTTCATTTTCTGACTCATGGTTTAAT-CTCGT
* * * * * * * *
3467250 TCTTTTTTCATTTTTTGACTCATCGTTTAATCCTAATCGCTTTT-ATTTTTTGACTCGTGGTTTA
1 TC-GTTTTCATTTTTTGACTCATGGTTTAATCCTGATC-ATTTTCATTTTCTCACTCATGATTTA
* * * * * * * * * * *
3467314 A-TCTTGGCGGTTTTCTTTTTCTCATTAAGGGGTTAGTCCCAG-
64 ATTCTAGTC-ATTTTCATTTTCTGACTCATGGTTTAATCTC-GT
* * * ** ** ** * * * *
3467356 TCATTTTCATTTTCTAACTTGTACTTTAATTTTGGTCATTTTCATTTTCTGACTAGTAATTTAAT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTCATTTTCT--C-ACTCA--TGA-
* * * *
3467421 TTTGATAATTTTCATTA-TCATTTTCATTTTCTAACTCGTGGTTTTA-ATC--
60 -TT--TAA--TTC--TAGTCATTTTCATTTTCTGACTCATGGTTTAATCTCGT
*** * ** * * **
3467470 TCGATGGTTTTCATTTTT---TGACTCGTGATTTAATTTTAATCATTTTTA-TTTCTCTAGCTTG
1 TCG-T--TTTCATTTTTTGACTCA-T-G-G-TTTAATCCTGATCATTTTCATTTTCTC-A-CTCA
* * *
3467531 TGATTTAATATCGA-TCATTTTCATTTTCTGACTCGTGATTTAATCTCGGT
57 TGATTTAAT-TCTAGTCATTTTCATTTTCTGACTCATGGTTTAATCTC-GT
** * * * * *
3467581 T-AATTTCTTTTTTTAAC-CTATGGTTTAATCCTGATCATTTTCATTTTTTGACTCGA-GCTTTT
1 TCGTTTTCATTTTTTGACTC-ATGGTTTAATCCTGATCATTTTCATTTTCTCACTC-ATG-ATTT
* * * * *
3467643 AA-TCTTAGTCTTTTTTATTTTTTGACTCATGATTTAATCTCGA
63 AATTC-TAGTCATTTTCATTTTCTGACTCATGGTTTAATCTCGT
* * * * * * * *
3467686 TCGTTTTTATTTTCTGGCTCGTGGTTTAATTCC-CATTGA-TTTCATTTTTTGACTCATGATTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAA-TCCTGA-TCATTTTCATTTTCTCACTCATGATTTA
* * * * * *
3467749 ATTCTAGTTATTTTTATTTCTTTGAGTCATGGTTCAATCCCTGT
64 ATTCTAGTCATTTTCATTT-TCTGACTCATGGTTTAATCTC-GT
* * * ** ** ** * * ** * *
3467793 T-GTTTTCATTGTCTAACTCACAGTTTAATCCCAATTGTTTTTCATTTTTTGACTGGTGGTTTCA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGA-TCATTTTCATTTTCTCACTCATGATTTAA
** * ** *
3467857 -TCTCAGTCATTTTCATCCTCTAACTCATAATTCAATAC-C-T
65 TTCT-AGTCATTTTCATTTTCTGACTCATGGTTTAAT-CTCGT
* * ** ** **
3467897 GTCATTTTCATTTTTTGACTCATGGTTTAATCTTGATTGTTTTCAATTTT-AGACTTGTGATTTA
1 -TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTC-ATTTTCTCACTCATGATTTA
* * * * * *
3467961 ATT-TCGGTCATTTTTATTTTTCTGACTCATGATTTAATTTTGG
64 ATTCT-AGTCATTTTCA-TTTTCTGACTCATGGTTTAATCTCGT
* * * * * *
3468004 TCATTTTCATTTCTTGACT-AGTGGTTTAAT-CTAGGTCATTTTCATTTTTTGACTCATCG-TTG
1 TCGTTTTCATTTTTTGACTCA-TGGTTTAATCCT-GATCATTTTCATTTTCTCACTCAT-GATTT
* * * * * * *
3468066 AATCCTGGTCGTTTTCATTTTTTGACTTAAGGTTTAATCTCGG
63 AATTCTAGTCATTTTCATTTTCTGACTCATGGTTTAATCTCGT
* * * * * ** * *
3468109 TCATTGTCACTTTTTGACTTATGGTTTAATCCTTATTGTTTTACATTTTCTAACTCATGCTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTT-CATTTTCTCACTCATGATTTAA
* * * *
3468174 TCCCT-GTCATTTTCATTTTCTGACACATTGTTTAATC-CTT
65 T-TCTAGTCATTTTCATTTTCTGACTCATGGTTTAATCTCGT
* * * * * * * *
3468214 GTCATTTTTATTTTTTGACTCATGTTTTAAT-CTCGGTCATTTTTATTTTTTGACTCATGGTTTA
1 -TCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCATTTTCATTTTCTCACTCATGATTT-
** * ** * *
3468278 AACCCTA-TCATTTTTCATTTTCTGAGTCATCATTTAATCCCGA
63 AATTCTAGTCA-TTTTCATTTTCTGACTCATGGTTTAATCTCGT
* * * * ** * * * * *
3468321 TCGCTTTCATTTTCTGACTCATGGTTTAATCTTGGTGGTTTTCGTTTTCTCACTTAGGGTTTAGT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTCATTTTCTCACTCATGATTTAAT
* * * * * ** * **
3468386 CCCAATCATTGTCATTTTCTAACTTGTGCTTTAAT-TCCAA
66 TCTAGTCATTTTCATTTTCTGACTCATGGTTTAATCT-CGT
** * * * * * * * * * ** *
3468426 TCACTTT-AATTTTTAACTCACGTTTTGAT-CTCGGTCACTTTGATTTTCTGACTTGTAATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCATTTTCATTTTCTCACTCATGATTTAA
* * **
3468489 TTATGGTAATTTTCATTATTTTTTTCATTTTCTGACTTGTGGTTTAATCTC-T
65 -T-T-CT-A--GTC---A---TTTTCATTTTCTGACTCATGGTTTAATCTCGT
* * * * * * * ** **
3468541 ATAGTTTTTATTTTTTGACTCGTGATTTACT-TTCGATCATTTTTATTTCTCTGGCTTGTGATTT
1 -TCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCATTTTCATTT-TCTCACTCATGATTT
* * * * * *
3468605 AATATCGA-T-AGTTTTCATTTTTTAACTCGTGATTTAATCTC-A
63 AAT-TCTAGTCA-TTTTCATTTTCTGACTCATGGTTTAATCTCGT
* * ** * * * * *
3468647 ACTATTTTCATTTTCTAAAC-CATGGTTTAATCCTAATGATTTTCATTTTCTAACCCATGGTTTA
1 TC-GTTTTCATTTT-TTGACTCATGGTTTAATCCTGATCATTTTCATTTTCTCACTCATGATTTA
* * ** *
3468711 ATCCT-GATCATTTTCATTTTTTGACTTGTGATTTAATC-CAAG-
64 ATTCTAG-TCATTTTCATTTTCTGACTCATGGTTTAATCTC--GT
* * * * * * * * **
3468753 TCATTTTTATTTTCTGACTCGA-GGTTTAAT-CTTAGTCTTTTTTATTTTTTTACTCACAATTTA
1 TCGTTTTCATTTTTTGACTC-ATGGTTTAATCCTGA-TCATTTTCATTTTCTCACTCATGATTTA
* * * **
3468816 A-TCTTGATCGTTTTCATTTTTTGACTCATGGTTTAAT-TCCCA
64 ATTCTAG-TCATTTTCATTTTCTGACTCATGGTTTAATCT-CGT
** * * * * * * * *
3468858 TCAATTTCATTTTCTGACTCATGATTTAATTCT-AGTTATTTTTATTTCTCTAAGTCATGGTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGA-TCATTTTCATTT-TCTCACTCATGATTTA
* ** * * * *
3468922 ATCCT-GTTGTCTTCATTTTCTAACTCGTGGTTTAATCCCGAT
64 ATTCTAGTCATTTTCATTTTCTGACTCATGGTTTAATCTCG-T
* ** * * * * * *
3468964 T-GTTTTTCATTTTTTGATTGGTGGTTTCAT-CTCGGTCTTTTTCATTCTCTAACTCATGGTTTA
1 TCG-TTTTCATTTTTTGACTCATGGTTTAATCCT-GATCATTTTCATTTTCTCACTCATGATTTA
* * * * *
3469027 ATACCTA-TCATTTTGATTTTTTGACTTATGGTTTAATCTTGGT
64 AT-TCTAGTCATTTTCATTTTCTGACTCATGGTTTAATC-TCGT
* * * ** * ** * * * *
3469070 T-GTTTTTAGTTTTAGACTTGTGATTTAATTTTGGTCATTTTTATTTTTTTGACTCATGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTCA-TTTTCTCACTCATGATTTAA
* *
3469134 TTCTAGTCGTTTTCA-TTTCTTGACT-AGTGGTTTAATC-CTGG
65 TTCTAGTCATTTTCATTTTC-TGACTCA-TGGTTTAATCTC-GT
* * * * * * * *
3469175 TCATTTTCATTTTTTGACTTATCGTTGAAT-CTCGAT-ATTTTTCATTTTTTGACACGTGATTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCA-TTTTCATTTTCTCACTCATGATTTA
* ** * *
3469238 A-TCTTGGTCATTTTCACTTTT-TGACTTGTGGTTTAA-CCCTT
64 ATTC-TAGTCATTTTCA-TTTTCTGACTCATGGTTTAATCTCGT
* * * * *
3469279 ATTGTTTTACATTTTCTAACTCATGCTTTAATCCCT-ATCATTTTCATTTTCTGA-TGCATTG-T
1 -TCGTTTT-CATTTTTTGACTCATGGTTTAAT-CCTGATCATTTTCATTTTCTCACT-CA-TGAT
* * * * *
3469341 TTAATCCTTA-TCACTTTT-ATTTTTTGACTCATGTTTTAATCTTGG
61 TTAATTC-TAGTCA-TTTTCATTTTCTGACTCATGGTTTAATCTCGT
* * * * ** * *
3469386 TCATTTTTATTTTTTAACTCATGGTATAATCCCT-ATTGTTTTTCATTTTTTAACTCATCG-TTT
1 TCGTTTTCATTTTTTGACTCATGGTTTAAT-CCTGA-TCATTTTCATTTTCTCACTCAT-GATTT
** ** * * *
3469449 AA-TCCCGATCGCTTTCATTTTCTGAGTCAAGGTTTAATCCTAG-
63 AATTCTAG-TCATTTTCATTTTCTGACTCATGGTTTAAT-CTCGT
* * * * * * * * ** *
3469492 TGGTTTTCATTTTCTCACTCAGGGTTTAGTCC-CAGTTATTTTCATTTTCTAACTTGTGCTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGA-TCATTTTCATTTTCTCACTCATGATTTAA
* * * * * *
3469556 TTAT-GATCATTTTAATTTTTTAACTCGCAT--TTTGATCTCGG
65 TTCTAG-TCATTTTCATTTTCTGACT--CATGGTTTAATCTCGT
** * * ** ** ** *
3469597 TCACTTTCATTTTCTGACTCGTAATTTAATTATGGTAATTTTCATTATTTTTTTGGTTTTCTGAC
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCT-G--A---TC---A---TTTTCATTTTCTCAC
* * *
3469662 TCATGGA-TTAATTCCTA-TCAATTTCGTTTTCTGACTCATGGATTAAT-TC--
54 TCAT-GATTTAATT-CTAGTCATTTTCATTTTCTGACTCATGGTTTAATCTCGT
* * * * * * * * * * *
3469711 -C--TATCA-ATTTTGACTCATGATTTAATTCTGGTTATTTTTATTTCTCTGAGTAATGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTCATTT-TCTCACTCATGATTTAA
* ** * * * *
3469772 TCACT-GTTGTCTTCATTTTTTGACTCATGGTTTAATCCCAAT
65 T-TCTAGTCATTTTCATTTTCTGACTCATGGTTTAATCTC-GT
** * * * * * *
3469814 T-GTTATTCA-TTTTTGACTGGTGGTTTCAT-CTCGGTCACTTTCATTCTCTAACTCA-CAGTTT
1 TCGTT-TTCATTTTTTGACTCATGGTTTAATCCT-GATCATTTTCATTTTCTCACTCATGA-TTT
* * * * *
3469875 AATACCT-GTCATTTTAATTTTTTGACTCATGGTTAAATCTTGGT
63 AAT-TCTAGTCATTTTCATTTTCTGACTCATGGTTTAATC-TCGT
* ** ** * ** * * * * * *
3469919 T-GTTTTCAGTTTTAAACTTGTGATTTAATTTTGGTCATTTTTATTTTTTTGACTCGTGATTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTCA-TTTTCTCACTCATGATTTAA
* * * *
3469983 TTCTATTTATTTTTCA-TTTCTTGACT-AGTGGTTTAATCTTGA
65 TTCTAGTCA-TTTTCATTTTC-TGACTCA-TGGTTTAATCTCGT
* * * * * * *
3470025 TCATTTTCATTTTTTGACTCAT-CTTTAATCCTGGTCGTTTTCAATTTT-TGACTCGTGGTTT-A
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTC-ATTTTCTCACTCATGATTTAA
* ** *
3470087 TTCTTGGTCATTTTCACTTTT-TGACTTGTGGTTTAATC-CTT
65 TTC-TAGTCATTTTCA-TTTTCTGACTCATGGTTTAATCTCGT
* * * * * *
3470128 ATTGTTCTACATTTTCTGACTCATGCTTTAATCCCTG-TCA-TTTCATTTTCTGACGCATTG-TT
1 -TCGTT-TTCATTTTTTGACTCATGGTTTAAT-CCTGATCATTTTCATTTTCTCACTCA-TGATT
* * * * * * *
3470190 TAATCCTTGTCATTTT--TTTTTTAACTCATGTTTTAATCTTGG
62 TAATTCTAGTCATTTTCATTTTCTGACTCATGGTTTAATCTCGT
* * * * * * *
3470232 TCATTTTTATTTTTTGACTCATGGTATAATCCTTATCGTTTTTCATTTTTTGACTCATCG-TTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATC-ATTTTCATTTTCTCACTCAT-GATTTA
** **
3470296 A-TCCCGATCGCTTTCATTTTCTGACTCATGGTTTAATC
64 ATTCTAG-TCATTTTCATTTTCTGACTCATGGTTTAATC
3470334 CTAATGGTTT
Statistics
Matches: 2780, Mismatches: 770, Indels: 542
0.68 0.19 0.13
Matches are distributed among these distances:
98 8 0.00
99 38 0.01
100 1 0.00
101 4 0.00
102 26 0.01
103 21 0.01
104 205 0.07
105 917 0.33
106 1121 0.40
107 198 0.07
108 10 0.00
109 5 0.00
110 25 0.01
111 6 0.00
112 5 0.00
113 2 0.00
114 9 0.00
115 9 0.00
116 33 0.01
117 101 0.04
118 35 0.01
119 1 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (105 bp):
TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTCATTTTCTCACTCATGATTTAAT
TCTAGTCATTTTCATTTTCTGACTCATGGTTTAATCTCGT
Found at i:3467279 original size:71 final size:70
Alignment explanation
Indices: 3467183--3467316 Score: 166
Period size: 71 Copynumber: 1.9 Consensus size: 70
3467173 ATCCCTTTGA
* * * *
3467183 TTTTTATTTTTTGACTCGTGATTTAAT-CTCGATTG-TTTTCATTTTTTGACTTGTGGTATAATC
1 TTTTTATTTTTTGACTCATGATTTAATCCT-AATCGCTTTT-ATTTTTTGACTCGTGGTATAATC
3467246 CTAGTCT
64 CTAGTCT
*
3467253 TTTTTCATTTTTTGACTCATCG-TTTAATCCTAATCGCTTTTATTTTTTGACTCGTGGTTTAATC
1 TTTTT-ATTTTTTGACTCAT-GATTTAATCCTAATCGCTTTTATTTTTTGACTCGTGGTATAATC
3467317 TTGGCGGTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
70 5 0.09
71 43 0.78
72 7 0.13
ACGTcount: A:0.17, C:0.15, G:0.13, T:0.55
Consensus pattern (70 bp):
TTTTTATTTTTTGACTCATGATTTAATCCTAATCGCTTTTATTTTTTGACTCGTGGTATAATCCT
AGTCT
Found at i:3467394 original size:35 final size:35
Alignment explanation
Indices: 3467355--3467436 Score: 119
Period size: 35 Copynumber: 2.3 Consensus size: 35
3467345 GTTAGTCCCA
* *
3467355 GTCATTTTCATTTTCTAACTTGTACTTTAATTTTG
1 GTCATTTTCATTTTCTAACTAGTAATTTAATTTTG
*
3467390 GTCATTTTCATTTTCTGACTAGTAATTTAATTTTG
1 GTCATTTTCATTTTCTAACTAGTAATTTAATTTTG
* *
3467425 ATAATTTTCATT
1 GTCATTTTCATT
3467437 ATCATTTTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.56
Consensus pattern (35 bp):
GTCATTTTCATTTTCTAACTAGTAATTTAATTTTG
Found at i:3467538 original size:71 final size:71
Alignment explanation
Indices: 3467437--3467716 Score: 192
Period size: 71 Copynumber: 4.0 Consensus size: 71
3467427 AATTTTCATT
* * ** *
3467437 ATCATTTTCATTTTCTAACTCGTGGTTTTAATCTCGATGGTTTTCATTTTTTGACTCGTGATTTA
1 ATCATTTTCATTTTCTAACTCGTGGATTTAATATCGATCATTTTCATTTTCTGACTCGTGATTTA
3467502 ATTTTA
66 ATTTTA
* * *
3467508 ATCATTTTTATTTCTCTAGCTTGT-GATTTAATATCGATCATTTTCATTTTCTGACTCGTGATTT
1 ATCATTTTCATTT-TCTAACTCGTGGATTTAATATCGATCATTTTCATTTTCTGACTCGTGATTT
* **
3467572 AATCTCG
65 AATTTTA
* * * * * * * * * *
3467579 GTTAATTTCTTTTTTTAAC-CTATGG-TTTAAT-CCTGATCATTTTCATTTTTTGACTCGAGCTT
1 ATCATTTTCATTTTCTAACTC-GTGGATTTAATATC-GATCATTTTCATTTTCTGACTCGTG-AT
*
3467641 TTAATCTTA
63 TTAATTTTA
* * * * * * * * * * *
3467650 GTCTTTTTTATTTTTTGACTCAT-GATTTAATCTCGATCGTTTTTATTTTCTGGCTCGTGGTTTA
1 ATCATTTTCATTTTCTAACTCGTGGATTTAATATCGATCATTTTCATTTTCTGACTCGTGATTTA
3467714 ATT
66 ATT
3467717 CCCATTGATT
Statistics
Matches: 161, Mismatches: 40, Indels: 17
0.74 0.18 0.08
Matches are distributed among these distances:
69 1 0.01
70 41 0.25
71 109 0.68
72 10 0.06
ACGTcount: A:0.19, C:0.15, G:0.12, T:0.54
Consensus pattern (71 bp):
ATCATTTTCATTTTCTAACTCGTGGATTTAATATCGATCATTTTCATTTTCTGACTCGTGATTTA
ATTTTA
Found at i:3467679 original size:35 final size:35
Alignment explanation
Indices: 3467545--3470462 Score: 518
Period size: 35 Copynumber: 82.6 Consensus size: 35
3467535 TTAATATCGA
* * * **
3467545 TCATTTTCATTTTCTGACTCGTGATTTAATCTCGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * * *
3467580 TTAATTTCTTTTTTTAAC-CTATGGTTTAATCCT-G
1 TCATTTTCATTTTTTGACTC-ATGGTTTAATCTTAG
*
3467614 ATCATTTTCATTTTTTGACTCGA-GCTTTTAATCTTAG
1 -TCATTTTCATTTTTTGACTC-ATG-GTTTAATCTTAG
* * * *
3467651 TCTTTTTTATTTTTTGACTCATGATTTAATC-TCG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * * * ** *
3467685 ATCGTTTTTATTTTCTGGCTCGTGGTTTAATTCCCAT
1 -TCATTTTCATTTTTTGACTCATGGTTTAA-TCTTAG
* *
3467722 TGA-TTTCATTTTTTGACTCATGATTTAAT-TCTAG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-TAG
* * * * *
3467756 TTATTTTTATTTCTTTGAGTCATGGTTCAATCCCT-G
1 TCATTTTCATTT-TTTGACTCATGGTTTAAT-CTTAG
** * * * ** ** *
3467792 TTGTTTTCATTGTCTAACTCACAGTTTAATCCCAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTTAG
** ** * *
3467828 TGTTTTTCATTTTTTGACTGGTGGTTTCATCTCAG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
** * * ** * *
3467863 TCATTTTCATCCTCTAACTCATAATTCAATACCT-G
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTTAG
3467898 TCATTTTCATTTTTTGACTCATGGTTTAATCTT-G
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
** * * ** * *
3467932 ATTGTTTTCAATTTTAGACTTGTGATTTAAT-TTCGG
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTT-AG
* * * *
3467968 TCATTTTTATTTTTCTGACTCATGATTTAATTTTGG
1 TCATTTTCATTTTT-TGACTCATGGTTTAATCTTAG
*
3468004 TCATTTTCATTTCTTGACT-AGTGGTTTAATC-TAGG
1 TCATTTTCATTTTTTGACTCA-TGGTTTAATCTTA-G
* * * *
3468039 TCATTTTCATTTTTTGACTCATCGTTGAATCCTGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * **
3468074 TCGTTTTCATTTTTTGACTTAAGGTTTAATCTCGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * *
3468109 TCATTGTCACTTTTTGACTTATGGTTTAATCCTTA-
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTTAG
** * * * *
3468144 TTGTTTTACATTTTCTAACTCATGCTTTAATCCCT-G
1 TCATTTT-CATTTTTTGACTCATGGTTTAAT-CTTAG
* * *
3468180 TCATTTTCATTTTCTGACACATTGTTTAATCCTT-G
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTTAG
* * **
3468215 TCATTTTTATTTTTTGACTCATGTTTTAATCTCGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * *
3468250 TCATTTTTATTTTTTGACTCATGGTTTAAACCCTA-
1 TCATTTTCATTTTTTGACTCATGGTTT-AATCTTAG
* * ** **
3468285 TCATTTTTCATTTTCTGAGTCATCATTTAATC-CCG
1 TCA-TTTTCATTTTTTGACTCATGGTTTAATCTTAG
** * *
3468320 ATCGCTTTCATTTTCTGACTCATGGTTTAATCTTGG
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
** * * * * * * ** *
3468356 TGGTTTTCGTTTTCTCACTTAGGGTTTAGTCCCAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * ** * * *
3468391 TCATTGTCATTTTCTAACTTGTGCTTTAAT-TCCAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-TAG
* * * * * * **
3468426 TCACTTT-AATTTTTAACTCACGTTTTGATCTCGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * ** ** *
3468460 TCACTTTGATTTTCTGACTTGTAATTTAAT-TATGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-TAG
* ** * *
3468495 TAATTTTCATTATTTT-TTTCAT-TTTCTGA-CTT-G
1 TCATTTTCATT-TTTTGACTCATGGTT-TAATCTTAG
** * * * ** * ** * * *
3468528 TGGTTTAATC-TCTATAGTTTTTATTTTTTGACTCGTGAT
1 TCATTT--TCATTTTTTG-ACTCATGGTTT-AATC-TTAG
* ** * *
3468567 TTACTTTCGATCATTTTTATTTCTC-TGGCTTGTGAT-TTAATA
1 TCA-TTT---TCATTTTT-TGACTCATGG-TT-TAATCTT-A-G
* * * *
3468609 TCGATAGTTTTCATTTTTTAACTCGTGATTTAATCTCA-
1 TC---A-TTTTCATTTTTTGACTCATGGTTTAATCTTAG
* ** * *
3468647 ACTATTTTCATTTTCTAAAC-CATGGTTTAATCCTAA
1 TC-ATTTTCATTTT-TTGACTCATGGTTTAATCTTAG
* * * * *
3468683 TGATTTTCATTTTCTAACCCATGGTTTAATCCT-G
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
** * **
3468717 ATCATTTTCATTTTTTGACTTGTGATTTAATCCAAG
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* *
3468753 TCATTTTTATTTTCTGACTCGA-GGTTTAATCTTAG
1 TCATTTTCATTTTTTGACTC-ATGGTTTAATCTTAG
* * * ***
3468788 TCTTTTTTATTTTTTTACTCACAATTTAATCTT-G
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* **
3468822 ATCGTTTTCATTTTTTGACTCATGGTTTAATTCCCA-
1 -TCATTTTCATTTTTTGACTCATGGTTTAA-TCTTAG
* * *
3468858 TCAATTTCATTTTCTGACTCATGATTTAAT-TCTAG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-TAG
* * * * * *
3468893 TTATTTTTATTTCTCTAAGTCATGGTTTAATCCT-G
1 TCATTTTCATTT-TTTGACTCATGGTTTAATCTTAG
** * * * * ** *
3468928 TTGTCTTCATTTTCTAACTCGTGGTTTAATCCCGAT
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTTAG
** * ** * **
3468964 TGTTTTTCATTTTTTGATTGGTGGTTTCATCTCGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * * *
3468999 TCTTTTTCATTCTCTAACTCATGGTTTAATACCTA-
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTTAG
* * *
3469034 TCATTTTGATTTTTTGACTTATGGTTTAATCTTGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
** * * * ** * * *
3469069 TTGTTTTTAGTTTTAGACTTGTGATTTAATTTTGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* *
3469104 TCATTTTTATTTTTTTGACTCATGATTTAAT-TCTAG
1 TCATTTTCA-TTTTTTGACTCATGGTTTAATCT-TAG
* * * *
3469140 TCGTTTTCATTTCTTGACT-AGTGGTTTAATCCTGG
1 TCATTTTCATTTTTTGACTCA-TGGTTTAATCTTAG
* * * *
3469175 TCATTTTCATTTTTTGACTTATCGTTGAATC-TCG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * *
3469209 AT-ATTTTTCATTTTTTGACACGTGATTTAATCTTGG
1 -TCA-TTTTCATTTTTTGACTCATGGTTTAATCTTAG
* ** *
3469245 TCATTTTCACTTTTTGACTTGTGGTTTAACCCTTA-
1 TCATTTTCATTTTTTGACTCATGGTTTAA-TCTTAG
** * * * *
3469280 TTGTTTTACATTTTCTAACTCATGCTTTAATCCCTA-
1 TCATTTT-CATTTTTTGACTCATGGTTTAAT-CTTAG
* *
3469316 TCATTTTCATTTTCTGA-TGCATTGTTTAATCCTTA-
1 TCATTTTCATTTTTTGACT-CATGGTTTAAT-CTTAG
* *
3469351 TCACTTTT-ATTTTTTGACTCATGTTTTAATCTTGG
1 TCA-TTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * * *
3469386 TCATTTTTATTTTTTAACTCATGGTATAATCCCTAT
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTTAG
** * * **
3469422 TGTTTTTCATTTTTTAACTCATCGTTTAATC-CCG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
** * * * *
3469456 ATCGCTTTCATTTTCTGAGTCAAGGTTTAATCCTAG
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
** * * * * **
3469492 TGGTTTTCATTTTCTCACTCAGGGTTTAGTCCCAG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * ** *
3469527 TTATTTTCATTTTCTAACTTGTGCTTTAA--TTATG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTA-G
* * * **
3469561 ATCATTTTAATTTTTTAACTCGCAT--TTTGATCTCGG
1 -TCATTTTCATTTTTTGACT--CATGGTTTAATCTTAG
* * * ** *
3469597 TCACTTTCATTTTCTGACTCGTAATTTAAT-TATGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-TAG
* * * *
3469632 TAATTTTCATTATTTT---T-TTGGTTT--TCTGAC
1 TCATTTTCATT-TTTTGACTCATGGTTTAATCTTAG
* * * * * * * * * *
3469662 TCATGGATTAATTCCTATCAAT-TTCGTTT--TCTGAC
1 TCAT--TTTCATT-TTTTGACTCATGGTTTAATCTTAG
* * *
3469697 TCATGGATTAATTCCTATCAATTTTGACTCATGATTTAAT-TCTGG
1 TC----ATT--TT-C-AT--TTTTTGACTCATGGTTTAATCT-TAG
* * * * * *
3469742 TTATTTTTATTTCTCTGAGTAATGGTTTAATCACT-G
1 TCATTTTCATTT-TTTGACTCATGGTTTAATC-TTAG
** * ** *
3469778 TTGTCTTCATTTTTTGACTCATGGTTTAATCCCAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
** ** * **
3469813 TTGTTATTCA-TTTTTGACTGGTGGTTTCATCTCGG
1 TCATT-TTCATTTTTTGACTCATGGTTTAATCTTAG
* * * * ** *
3469848 TCACTTTCATTCTCTAACTCACAGTTTAATACCT-G
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTTAG
* * *
3469883 TCATTTTAATTTTTTGACTCATGGTTAAATCTTGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
** * ** ** * * *
3469918 TTGTTTTCAGTTTTAAACTTGTGATTTAATTTTGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * * *
3469953 TCATTTTTATTTTTTTGACTCGTGATTTTAT-TCTAT
1 TCATTTTCA-TTTTTTGACTCATGGTTTAATCT-TAG
* *
3469989 TTATTTTTCATTTCTTGACT-AGTGGTTTAATCTT-G
1 TCA-TTTTCATTTTTTGACTCA-TGGTTTAATCTTAG
* * *
3470024 ATCATTTTCATTTTTTGACTCAT-CTTTAATCCTGG
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * * *
3470059 TCGTTTTCAATTTTTGACTCGTGGTTTATTCTTGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* **
3470094 TCATTTTCACTTTTTGACTTGTGGTTTAATCCTTA-
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTTAG
** * * * *
3470129 TTGTTCTACATTTTCTGACTCATGCTTTAATCCCT-G
1 TCATT-TTCATTTTTTGACTCATGGTTTAAT-CTTAG
* * *
3470165 TCA-TTTCATTTTCTGACGCATTGTTTAATCCTT-G
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTTAG
* * *
3470199 TCATTTT--TTTTTTAACTCATGTTTTAATCTTGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* *
3470232 TCATTTTTATTTTTTGACTCATGGTATAATCCTTA-
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTTAG
* * **
3470267 TCGTTTTTCATTTTTTGACTCATCGTTTAATC-CCG
1 TC-ATTTTCATTTTTTGACTCATGGTTTAATCTTAG
** * * *
3470302 ATCGCTTTCATTTTCTGACTCATGGTTTAATCCTAA
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
** * * * * * **
3470338 TGGTTTTCATTTTCTCACTTAGGGTTTAGTCCCAG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* ** * **
3470373 TCATTTTCATTTTTTAACTTGTGCTTTAAT-TCCG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
* * * * * *
3470407 ATCATTTTAATTTTTTAACTCACGTTTTGATCTCAG
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
*
3470443 TCACTTTCATTTTTTGACTC
1 TCATTTTCATTTTTTGACTC
3470463 GTAATTTAAT
Statistics
Matches: 2081, Mismatches: 640, Indels: 324
0.68 0.21 0.11
Matches are distributed among these distances:
30 4 0.00
31 1 0.00
32 14 0.01
33 35 0.02
34 148 0.07
35 1359 0.65
36 435 0.21
37 16 0.01
38 2 0.00
39 7 0.00
40 8 0.00
41 17 0.01
42 23 0.01
43 5 0.00
44 1 0.00
45 6 0.00
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.52
Consensus pattern (35 bp):
TCATTTTCATTTTTTGACTCATGGTTTAATCTTAG
Found at i:3468625 original size:71 final size:71
Alignment explanation
Indices: 3468509--3468640 Score: 194
Period size: 71 Copynumber: 1.9 Consensus size: 71
3468499 TTTCATTATT
* * * * *
3468509 TTTTTCATTTTCTGACTTGTGGTTTAATCTCTATAGTTTTTATTTTTTGACTCGTGATTTACTTT
1 TTTTTCATTTTCTGACTTGTGATTTAATATCGATAGTTTTCATTTTTTAACTCGTGATTTACTTT
3468574 CGATCA
66 CGATCA
*
3468580 TTTTT-ATTTCTCTGGCTTGTGATTTAATATCGATAGTTTTCATTTTTTAACTCGTGATTTA
1 TTTTTCATTT-TCTGACTTGTGATTTAATATCGATAGTTTTCATTTTTTAACTCGTGATTTA
3468641 ATCTCAACTA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
70 4 0.07
71 50 0.93
ACGTcount: A:0.18, C:0.13, G:0.13, T:0.56
Consensus pattern (71 bp):
TTTTTCATTTTCTGACTTGTGATTTAATATCGATAGTTTTCATTTTTTAACTCGTGATTTACTTT
CGATCA
Found at i:3468654 original size:71 final size:70
Alignment explanation
Indices: 3468509--3468662 Score: 184
Period size: 71 Copynumber: 2.2 Consensus size: 70
3468499 TTTCATTATT
* * * * * * *
3468509 TTTTTCATTTTCTGACTTGTGGTTTAATCTCTATAGTTTTTATTTTTTGACTCGTGATTTACTTT
1 TTTTT-ATTTTCTGACTTGTGATTTAATATCGATAGTTTTCATTTTTTAACTCGTGATTTAATCT
*
3468574 CGATCA
65 CAATCA
*
3468580 TTTTTATTTCTCTGGCTTGTGATTTAATATCGATAGTTTTCATTTTTTAACTCGTGATTTAATCT
1 TTTTTATTT-TCTGACTTGTGATTTAATATCGATAGTTTTCATTTTTTAACTCGTGATTTAATCT
3468645 CAA-CTA
65 CAATC-A
*
3468651 TTTTCATTTTCT
1 TTTTTATTTTCT
3468663 AAACCATGGT
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
70 8 0.11
71 63 0.89
ACGTcount: A:0.19, C:0.14, G:0.11, T:0.56
Consensus pattern (70 bp):
TTTTTATTTTCTGACTTGTGATTTAATATCGATAGTTTTCATTTTTTAACTCGTGATTTAATCTC
AATCA
Found at i:3469504 original size:141 final size:142
Alignment explanation
Indices: 3469213--3469489 Score: 355
Period size: 141 Copynumber: 2.0 Consensus size: 142
3469203 ATCTCGATAT
* * ** *
3469213 TTTTCATTTTTTGACACGTGATTTAATCTTGGTCATTTTCACTTTTTGACTTGTGGTTTAACCCT
1 TTTTCATTTTTTGACACATGATTTAATCTTGGTCATTTTCACTTTTTAACTCATGGTATAACCCT
* * **
3469278 TATTGTTTTACATTTTCTAACTCATGCTTTAATCCCTATCATTTTCATTTTCTGATGCATTGTTT
66 TATTGTTTTACATTTTCTAACTCATGCTTTAATCCCGATCACTTTCATTTTCTGATGCAAGGTTT
3469343 AATCCTTATCAC
131 AATCCTTATCAC
* * * *
3469355 TTTT-ATTTTTTGACTCATGTTTTAATCTTGGTCATTTTTATTTTTTAACTCATGGTATAATCCC
1 TTTTCATTTTTTGACACATGATTTAATCTTGGTCATTTTCACTTTTTAACTCATGGTATAA-CCC
* * *
3469419 -TATTGTTTTTCATTTTTTAACTCAT-CGTTTAATCCCGATCGCTTTCATTTTCTGA-GTCAAGG
65 TTATTGTTTTACATTTTCTAACTCATGC-TTTAATCCCGATCACTTTCATTTTCTGATG-CAAGG
3469481 TTTAATCCT
128 TTTAATCCT
3469490 AGTGGTTTTC
Statistics
Matches: 116, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
140 2 0.02
141 107 0.92
142 7 0.06
ACGTcount: A:0.20, C:0.18, G:0.10, T:0.52
Consensus pattern (142 bp):
TTTTCATTTTTTGACACATGATTTAATCTTGGTCATTTTCACTTTTTAACTCATGGTATAACCCT
TATTGTTTTACATTTTCTAACTCATGCTTTAATCCCGATCACTTTCATTTTCTGATGCAAGGTTT
AATCCTTATCAC
Found at i:3470227 original size:33 final size:33
Alignment explanation
Indices: 3470139--3470299 Score: 121
Period size: 34 Copynumber: 4.7 Consensus size: 33
3470129 TTGTTCTACA
* * * *
3470139 TTTTCTGACTCATGCTTTAATCCCTGTCATTTCA
1 TTTTTTGACTCATGTTTTAATCCTTGTCATTT-T
* *
3470173 TTTTCTGACGCAT-TGTTTAATCCTTGTCATTTT
1 TTTTTTGACTCATGT-TTTAATCCTTGTCATTTT
*
3470206 TTTTTTAACTCATGTTTTAAT-CTTGGTCATTTTT
1 TTTTTTGACTCATGTTTTAATCCTT-GTCA-TTTT
* * * *
3470240 ATTTTTTGACTCATGGTATAATCCTTATCGTTTTT
1 -TTTTTTGACTCATGTTTTAATCCTTGTC-ATTTT
3470275 CATTTTTTGACTCATCG-TTTAATCC
1 --TTTTTTGACTCAT-GTTTTAATCC
3470300 CGATCGCTTT
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
32 3 0.03
33 20 0.19
34 33 0.31
35 24 0.23
36 24 0.23
37 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.10, T:0.53
Consensus pattern (33 bp):
TTTTTTGACTCATGTTTTAATCCTTGTCATTTT
Found at i:3470262 original size:138 final size:140
Alignment explanation
Indices: 3470029--3470335 Score: 363
Period size: 138 Copynumber: 2.2 Consensus size: 140
3470019 TCTTGATCAT
* * * * * *
3470029 TTTCATTTTTTGACTCA-TCTTTAATCCTGGTCGTTTTCAATTTTTGACTCGTGGTTTATTCTTG
1 TTTCATTTTCTGACTCATTGTTTAATCCTGGTCATTTT-AATTTTTAACTCATGGTTTAATCTTG
** * *
3470093 GTCATTTTCACTTTTTGACTTGTGGTTTAATCCTTATTGTTCTACATTTTCTGACTCAT-GCTTT
65 GTCATTTTCACTTTTTGACTCATGGTATAATCCTTATCGTTCTACATTTTCTGACTCATCG-TTT
3470157 AATCCCTG-TC-A
129 AATCCC-GATCGA
* * * *
3470168 TTTCATTTTCTGACGCATTGTTTAATCCTTGTCATTTT-TTTTTTAACTCATGTTTTAATCTTGG
1 TTTCATTTTCTGACTCATTGTTTAATCCTGGTCATTTTAATTTTTAACTCATGGTTTAATCTTGG
* * * * *
3470232 TCATTTTTATTTTTTGACTCATGGTATAATCCTTATCGTTTTTCATTTTTTGACTCATCGTTTAA
66 TCATTTTCACTTTTTGACTCATGGTATAATCCTTATCGTTCTACATTTTCTGACTCATCGTTTAA
*
3470297 TCCCGATCGC
131 TCCCGATCGA
*
3470307 TTTCATTTTCTGACTCATGGTTTAATCCT
1 TTTCATTTTCTGACTCATTGTTTAATCCT
3470336 AATGGTTTTC
Statistics
Matches: 142, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
137 1 0.01
138 81 0.57
139 43 0.30
140 17 0.12
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (140 bp):
TTTCATTTTCTGACTCATTGTTTAATCCTGGTCATTTTAATTTTTAACTCATGGTTTAATCTTGG
TCATTTTCACTTTTTGACTCATGGTATAATCCTTATCGTTCTACATTTTCTGACTCATCGTTTAA
TCCCGATCGA
Found at i:3470622 original size:35 final size:34
Alignment explanation
Indices: 3470581--3470695 Score: 101
Period size: 34 Copynumber: 3.4 Consensus size: 34
3470571 TCTCTGGCTT
*
3470581 GTGATTTAATACCGATAGTTTTCATTTTTTAACTC
1 GTGATTTAAT-CCGATAGTTTTCATTTTCTAACTC
** *
3470616 GTGATTTAATTTGATTGTTTTCATTTTCTAAC-C
1 GTGATTTAATCCGATAGTTTTCATTTTCTAACTC
* *
3470649 ACTG-TTTAATCCTGATCA-TTTTCATTTTCTAACCC
1 -GTGATTTAATCC-GAT-AGTTTTCATTTTCTAACTC
* *
3470684 ATGGTTTAATCC
1 GTGATTTAATCC
3470696 CAATCATTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 10
0.78 0.11 0.12
Matches are distributed among these distances:
33 7 0.11
34 40 0.61
35 19 0.29
ACGTcount: A:0.23, C:0.17, G:0.10, T:0.49
Consensus pattern (34 bp):
GTGATTTAATCCGATAGTTTTCATTTTCTAACTC
Found at i:3470671 original size:34 final size:35
Alignment explanation
Indices: 3470633--3470709 Score: 113
Period size: 35 Copynumber: 2.2 Consensus size: 35
3470623 AATTTGATTG
**
3470633 TTTTCATTTTCTAA-CCACT-GTTTAATCCTGATCA
1 TTTTCATTTTCTAACCCA-TGGTTTAATCCCAATCA
3470667 TTTTCATTTTCTAACCCATGGTTTAATCCCAATCA
1 TTTTCATTTTCTAACCCATGGTTTAATCCCAATCA
3470702 TTTTCATT
1 TTTTCATT
3470710 CTTTGACTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
34 15 0.38
35 24 0.62
ACGTcount: A:0.23, C:0.23, G:0.05, T:0.48
Consensus pattern (35 bp):
TTTTCATTTTCTAACCCATGGTTTAATCCCAATCA
Found at i:3470722 original size:18 final size:18
Alignment explanation
Indices: 3470699--3470736 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
3470689 TTAATCCCAA
3470699 TCATTTTCAT-TCTTTGAC
1 TCATTTTCATAT-TTTGAC
*
3470717 TCATTTTTATATTTTGAC
1 TCATTTTCATATTTTGAC
3470735 TC
1 TC
3470737 GTGGATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.18, C:0.18, G:0.05, T:0.58
Consensus pattern (18 bp):
TCATTTTCATATTTTGAC
Found at i:3470770 original size:35 final size:35
Alignment explanation
Indices: 3470717--3470889 Score: 129
Period size: 35 Copynumber: 4.9 Consensus size: 35
3470707 ATTCTTTGAC
3470717 TCATTTTTATATTT-TGACTCGTGGATTAATCCTGA
1 TCATTTTTAT-TTTCTGACTCGTGGATTAATCCTGA
* *
3470752 TCGTTTTTATTTTCTGACTTGT-GATTTAATCCCT-A
1 TCATTTTTATTTTCTGACTCGTGGA-TTAAT-CCTGA
** * * * * *
3470787 TTGTCTTCATTTTCTGACTCATGG-TTTATCCTTA
1 TCATTTTTATTTTCTGACTCGTGGATTAATCCTGA
* * * * *
3470821 TCATTTTTCATTTTTTGACTAGTGGTTTCATCCTGG
1 TCATTTTT-ATTTTCTGACTCGTGGATTAATCCTGA
* * *
3470857 TCATTTTCATTTTCTGACTCGTTGTTTAATCCT
1 TCATTTTTATTTTCTGACTCGTGGATTAATCCT
3470890 AGTTGTTTTT
Statistics
Matches: 108, Mismatches: 23, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
33 3 0.03
34 14 0.13
35 73 0.68
36 18 0.17
ACGTcount: A:0.17, C:0.18, G:0.13, T:0.53
Consensus pattern (35 bp):
TCATTTTTATTTTCTGACTCGTGGATTAATCCTGA
Found at i:3470930 original size:105 final size:104
Alignment explanation
Indices: 3470717--3470938 Score: 236
Period size: 105 Copynumber: 2.1 Consensus size: 104
3470707 ATTCTTTGAC
* * * * *
3470717 TCATTTTTATATTTTGACTCGTGGATTAATCCTGATCGTTTTTATTTTCTGACTTGTGATTTAAT
1 TCATTTTTATTTTTTGACTAGTGGATTAATCCTGATCATTTTCATTTTCTGACTCGTGATTTAAT
** *
3470782 CCCTATTGTCTTCATTTTCTGACTCATGGTTTATCCTTA
66 CCCTATTGTCTTCATTTTCAAACTCATGATTTATCCTTA
* * *
3470821 TCATTTTTCATTTTTTGACTAGTGGTTTCATCCTGGTCATTTTCATTTTCTGACTCGTTG-TTTA
1 TCATTTTT-ATTTTTTGACTAGTGGATTAATCCTGATCATTTTCATTTTCTGACTCG-TGATTTA
* * * *
3470885 AT-CCTAGTTGTTTTTAGTTTT-AAACTCATGATTTAAT-TTTG
64 ATCCCTA-TTGTCTTCA-TTTTCAAACTCATGATTT-ATCCTTA
3470926 TCATTTTTATTTT
1 TCATTTTTATTTT
3470939 CTAACTGGTG
Statistics
Matches: 98, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
104 17 0.17
105 73 0.74
106 8 0.08
ACGTcount: A:0.18, C:0.15, G:0.12, T:0.55
Consensus pattern (104 bp):
TCATTTTTATTTTTTGACTAGTGGATTAATCCTGATCATTTTCATTTTCTGACTCGTGATTTAAT
CCCTATTGTCTTCATTTTCAAACTCATGATTTATCCTTA
Found at i:3471072 original size:35 final size:34
Alignment explanation
Indices: 3470952--3471158 Score: 103
Period size: 35 Copynumber: 5.9 Consensus size: 34
3470942 ACTGGTGGTC
* *
3470952 TTGACTAGTGGTTTAATCTCGATCATTTTCATTTT
1 TTGACTCGTGATTTAATC-CGATCATTTTCATTTT
* * * ** * * *
3470987 CTGGCTCGTAATTTAATTTTGGTCAATTTT-GTTTC
1 TTGACTCGTGATTTAA-TCCGATC-ATTTTCATTTT
** *
3471022 TTGACAAGTGGTTTAATCCCGATCATTTTCATTTT
1 TTGACTCGTGATTTAAT-CCGATCATTTTCATTTT
* * * * * * *
3471057 TTTACTCTTGTTTTAATTCTAGTCGTTTTTATTTCT
1 TTGACTCGTGATTTAATCCGA-TCATTTTCATTT-T
*
3471093 TTGACTCGTGATTTAATACCGATTATTTTCA-TTT
1 TTGACTCGTGATTTAAT-CCGATCATTTTCATTTT
* * * *
3471127 TTGACTCATCATTTAATCATGGTCATTTTCAT
1 TTGACTCGTGATTTAATC-CGATCATTTTCAT
3471159 AAATCATGGT
Statistics
Matches: 120, Mismatches: 43, Indels: 18
0.66 0.24 0.10
Matches are distributed among these distances:
33 1 0.01
34 33 0.28
35 57 0.47
36 27 0.22
37 2 0.02
ACGTcount: A:0.20, C:0.15, G:0.13, T:0.52
Consensus pattern (34 bp):
TTGACTCGTGATTTAATCCGATCATTTTCATTTT
Found at i:3471072 original size:70 final size:70
Alignment explanation
Indices: 3470950--3471143 Score: 201
Period size: 70 Copynumber: 2.8 Consensus size: 70
3470940 TAACTGGTGG
* * * * *
3470950 TCTTGACTAGTGGTTTAATCTCGATCATTTTCATTTTCTGGCTCGTAATTTAATTTTGGTCAATT
1 TCTTGACTAGTGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTAATTTAATTCTAGTCAATT
*
3471015 TTGTT
66 TTATT
* * * ** **
3471020 TCTTGACAAGTGGTTTAATCCCGATCATTTTCATTTTTTTACTCTTGTTTTAATTCTAGTCGTTT
1 TCTTGACTAGTGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTAATTTAATTCTAGTCAATT
3471085 TTATT
66 TTATT
* * * * * *
3471090 TCTTTGACTCGTGATTTAATACCGATTATTTTCA-TTTTTGACTCATCATTTAAT
1 TC-TTGACTAGTGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTAATTTAAT
3471144 CATGGTCATT
Statistics
Matches: 101, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
70 75 0.74
71 26 0.26
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.52
Consensus pattern (70 bp):
TCTTGACTAGTGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTAATTTAATTCTAGTCAATT
TTATT
Found at i:3471165 original size:19 final size:19
Alignment explanation
Indices: 3471141--3471177 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
3471131 CTCATCATTT
3471141 AATCATGGTCATTTTCATA
1 AATCATGGTCATTTTCATA
*
3471160 AATCATGGTTATTTTCAT
1 AATCATGGTCATTTTCAT
3471178 TTTCTAACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.46
Consensus pattern (19 bp):
AATCATGGTCATTTTCATA
Found at i:3471210 original size:35 final size:35
Alignment explanation
Indices: 3471170--3472374 Score: 299
Period size: 35 Copynumber: 34.1 Consensus size: 35
3471160 AATCATGGTT
*
3471170 ATTTTCATTTTCTAACTCGTGATTTAATCTCGGTC
1 ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
* * * *
3471205 ATTTTCACTTTT-TGACTTGTGGTTTAATC-C-CTA
1 ATTTTCA-TTTTCTGACTCGTGATTTAATCTCGGTC
* * ** * * *
3471238 ATGTTTTACATTTTTTAACTTATGCTTTAATCCCTGTC
1 A--TTTT-CATTTTCTGACTCGTGATTTAATCTCGGTC
* * * *
3471276 GTTTTCATTTTTCTGACGT-GTTATTTAATCCCTGTC
1 ATTTTCA-TTTTCTGAC-TCGTGATTTAATCTCGGTC
* * * *
3471312 ATTTT--TTTTTTTACTCGTGATTTAATCTTGATC
1 ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
* ** * * * * * *
3471345 GTTTTTGTTTTTTGACTCATGGTATAATCCCGATC
1 ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
* * *
3471380 GTTTTTCATTTTCTGACTCATCG-TTTAATCTCGATC
1 -ATTTTCATTTTCTGACTCGT-GATTTAATCTCGGTC
** * * * *
3471416 GCTTTCATTTTTTGACCCATGGTTTAATC-CTGG-C
1 ATTTTCATTTTCTGACTCGTGATTTAATCTC-GGTC
* * * ** * * * * **
3471450 GGTTTTCATTTTCTCATTCAAGGTATAGTCGCAATC
1 -ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
* *
3471486 ATTTTCATTTTCTGACTTC-TGCTTTAAT-TCTGGTT
1 ATTTTCATTTTCTGAC-TCGTGATTTAATCTC-GGTC
* * * * * * *
3471521 GTTTTCATTTTTTAACTCGCGTTTTAATCTCAGTT
1 ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
* * * ***
3471556 ATTTTCAATTTCAGACTCGTAATTTAATTTCAATAATTTTC
1 ATTTTCATTTTCTGACTCGTGATTTAA--TC--T--CGGTC
* * **
3471597 ATTTTCATTTTCTGACTCATGATTTAATTTCAATC
1 ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
* * * * *
3471632 ATTTTTACTTCTCTGGCTTGTGATTTAATAC-CGATC
1 ATTTTCA-TTTTCTGACTCGTGATTTAAT-CTCGGTC
* * *
3471668 ATTTTCATTTTTTGACTCATGATTTAATCTCGATC
1 ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
* * * * * * *
3471703 GTTTTCATTTTCTAAC-CTATGGTTTAATATCAGTT
1 ATTTTCATTTTCTGACTC-GTGATTTAATCTCGGTC
* * * * * * * *
3471738 GTTTTCTTTTTTTGACCCATGGTTAAATC-CTGATC
1 ATTTTCATTTTCTGACTCGTGATTTAATCTC-GGTC
* *
3471773 ATTTTCATTTTTTGACTCGTGATTTAATCTAGGTC
1 ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
* * * * * *
3471808 ATTTTTATTTTCT-AATATGTGTTTTAATCCCGATC
1 ATTTTCATTTTCTGACT-CGTGATTTAATCTCGGTC
* * *
3471843 ATTTTTATTTTTTGACTCGTGATTTAATCTTGGTC
1 ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
* * **
3471878 ATTTTCATTTTTTGACTCGTGGTTTAAT-TCCCATC
1 ATTTTCATTTTCTGACTCGTGATTTAATCT-CGGTC
* *
3471913 GTTTTCATTTTTTGACTCGTGATTTAAT-TCTGGTC
1 ATTTTCATTTTCTGACTCGTGATTTAATCTC-GGTC
* * * * * * * *
3471948 ATTTTTATTTCTCTAATTCATGGTTTAATCCCTGTT
1 ATTTTCATTT-TCTGACTCGTGATTTAATCTCGGTC
* * * * * *
3471984 GTCTTCATTTTCTGACTCATGGTTTAATCTCGAATG
1 ATTTTCATTTTCTGACTCGTGATTTAATCTCG-GTC
* * * * * *
3472020 TTTTTCATTTTTTGACTGGTGGTTTCATCTCAGTC
1 ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
* * * * * * *
3472055 GTTTT-ATTTGCTAACTTGT-AGTTTAATCCCTGTT
1 ATTTTCATTTTCTGACTCGTGA-TTTAATCTCGGTC
* * * * *
3472089 GTTTTAATTTTTTGACTCATTG-TTTAATC-CTAGTC
1 ATTTTCATTTTCTGACTC-GTGATTTAATCTC-GGTC
* * * * *
3472124 ATTTTCAATTTT-AGACTCGTGGTTTAATTTTGGTT
1 ATTTTC-ATTTTCTGACTCGTGATTTAATCTCGGTC
** * * * *
3472159 ATTTTTGTTTTCTAACT-GATGATTAAATTTTGGTC
1 ATTTTCATTTTCTGACTCG-TGATTTAATCTCGGTC
* * * *
3472194 ATTTCCA-TTTCTTGACTAGTGGTTTAATC-CTAGTC
1 ATTTTCATTTTC-TGACTCGTGATTTAATCTC-GGTC
* * *
3472229 ATTTTCATTTTCTAACTCATGATTTGAT-TCTGGTC
1 ATTTTCATTTTCTGACTCGTGATTTAATCTC-GGTC
* * * *
3472264 ATTTTTCCTTTCTTTGACTCATGATTTAATGC-CAGTC
1 A-TTTTCATTT-TCTGACTCGTGATTTAAT-CTCGGTC
* * * * * *
3472301 ATTTTC-TTTTTTGACTTGTCATTTAATTTCGATT
1 ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
* * * * *
3472335 GTTTTCATTTT-TGACGTCGTGGTTAAATCTCAGTA
1 ATTTTCATTTTCTGAC-TCGTGATTTAATCTCGGTC
3472370 ATTTT
1 ATTTT
3472375 AGTTTTTCGA
Statistics
Matches: 857, Mismatches: 248, Indels: 130
0.69 0.20 0.11
Matches are distributed among these distances:
32 1 0.00
33 25 0.03
34 76 0.09
35 517 0.60
36 184 0.21
37 26 0.03
38 2 0.00
39 2 0.00
41 24 0.03
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.52
Consensus pattern (35 bp):
ATTTTCATTTTCTGACTCGTGATTTAATCTCGGTC
Found at i:3471280 original size:36 final size:35
Alignment explanation
Indices: 3471206--3471287 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 35
3471196 ATCTCGGTCA
* * * *
3471206 TTTTCACTTTTTGACTTGTGGTTTAATCCCTAATG
1 TTTTCATTTTTTAACTTATGCTTTAATCCCTAATG
*
3471241 TTTTACATTTTTTAACTTATGCTTTAATCCCT-GTCG
1 TTTT-CATTTTTTAACTTATGCTTTAATCCCTAAT-G
3471277 TTTTCATTTTT
1 TTTTCATTTTT
3471288 CTGACGTGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
35 12 0.30
36 28 0.70
ACGTcount: A:0.17, C:0.17, G:0.10, T:0.56
Consensus pattern (35 bp):
TTTTCATTTTTTAACTTATGCTTTAATCCCTAATG
Found at i:3471335 original size:33 final size:35
Alignment explanation
Indices: 3471263--3471338 Score: 86
Period size: 36 Copynumber: 2.2 Consensus size: 35
3471253 TAACTTATGC
* *
3471263 TTTAATCCCTGTCGTTTTCATTTTTCTGACGTGTTA
1 TTTAATCCCTGTCATTTT-ATTTTTCTGACGTGTGA
*
3471299 TTTAATCCCTGTCATTTT-TTTTT-TTAC-TCGTGA
1 TTTAATCCCTGTCATTTTATTTTTCTGACGT-GTGA
3471332 TTTAATC
1 TTTAATC
3471339 TTGATCGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
32 1 0.03
33 13 0.36
34 5 0.14
36 17 0.47
ACGTcount: A:0.16, C:0.18, G:0.11, T:0.55
Consensus pattern (35 bp):
TTTAATCCCTGTCATTTTATTTTTCTGACGTGTGA
Found at i:3471416 original size:71 final size:70
Alignment explanation
Indices: 3471332--3471463 Score: 174
Period size: 71 Copynumber: 1.9 Consensus size: 70
3471322 TTACTCGTGA
* * ** * * *
3471332 TTTAATCTTGATCGTTTTTGTTTTTTGACTCATGGTATAATCCCGATCGTTTTTCATTTTCTGAC
1 TTTAATCTCGATCGCTTTCATTTTTTGACCCATGGTATAATCCCG-GCGGTTTTCATTTTCTGAC
3471397 TCATCG
65 TCATCG
* *
3471403 TTTAATCTCGATCGCTTTCATTTTTTGACCCATGGTTTAATCCTGGCGGTTTTCATTTTCT
1 TTTAATCTCGATCGCTTTCATTTTTTGACCCATGGTATAATCCCGGCGGTTTTCATTTTCT
3471464 CATTCAAGGT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
70 14 0.27
71 38 0.73
ACGTcount: A:0.16, C:0.20, G:0.14, T:0.50
Consensus pattern (70 bp):
TTTAATCTCGATCGCTTTCATTTTTTGACCCATGGTATAATCCCGGCGGTTTTCATTTTCTGACT
CATCG
Found at i:3471601 original size:41 final size:41
Alignment explanation
Indices: 3471556--3471636 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
3471546 AATCTCAGTT
*
3471556 ATTTTCAATTTCAGACTCGTAATTTAATTTCAATAATTTTC
1 ATTTTCAATTTCAGACTCATAATTTAATTTCAATAATTTTC
* * * *
3471597 ATTTTCATTTTCTGACTCATGATTTAATTTCAATCATTTT
1 ATTTTCAATTTCAGACTCATAATTTAATTTCAATAATTTT
3471637 TACTTCTCTG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.52
Consensus pattern (41 bp):
ATTTTCAATTTCAGACTCATAATTTAATTTCAATAATTTTC
Found at i:3471939 original size:105 final size:104
Alignment explanation
Indices: 3471171--3472316 Score: 413
Period size: 105 Copynumber: 10.8 Consensus size: 104
3471161 ATCATGGTTA
* * * * * *
3471171 TTTTCATTTTCTAACTCGTGATTTAATCTCGGTCATTTTCACTTTTTGACTTGTGGTTTAATCCC
1 TTTTCATTTTCTGACTCGTGATTTAATCTCGATCATTTTTATTTTTTGACTCGTGATTTAAT-CC
** * * * * **
3471236 TAAT-GTTTTACATTTTTTAACTTATGCTTTAATCCCTGTCG
65 TGGTCATTTT-CATTTTTTGACTCATGGTTTAAT-CCAATCG
* *
3471277 TTTTCATTTTTCTGACGT-GTTATTTAATCCCTG-TCATTTTT-TTTTTT-ACTCGTGATTTAAT
1 TTTTCA-TTTTCTGAC-TCGTGATTTAATCTC-GATCATTTTTATTTTTTGACTCGTGATTTAAT
* * * ** * *
3471338 CTTGATCGTTTTTGTTTTTTGACTCATGGTATAATCCCGATCG
63 CCTGGTCATTTTCATTTTTTGACTCATGGTTTAAT-CCAATCG
* ** * * * *
3471381 TTTTTCATTTTCTGACTCATCG-TTTAATCTCGATCGCTTTCATTTTTTGACCCATGGTTTAATC
1 -TTTTCATTTTCTGACTCGT-GATTTAATCTCGATCATTTTTATTTTTTGACTCGTGATTTAATC
* * * * * * * *
3471445 CTGG-CGGTTTTCATTTTCTCATTCAAGGTATAGTCGCAATCA
64 CTGGTC-ATTTTCATTTTTTGACTCATGGTTTAATC-CAATCG
* * ** * * * *
3471487 TTTTCATTTTCTGACTTC-TGCTTTAAT-TCTGGTTGTTTTCATTTTTTAACTCGCGTTTTAAT-
1 TTTTCATTTTCTGAC-TCGTGATTTAATCTC-GATCATTTTTATTTTTTGACTCGTGATTTAATC
* * * ** * ** * *
3471549 CTCAGTTATTTTCAATTTCAGACTCGTAATTTAATTTCAATAATTTTCA
64 CT-GGTCATTTTCATTTTTTGACTCATGGTTTAA--TC--CAA---TCG
* * * * * * *
3471598 TTTTCATTTTCTGACTCATGATTTAATTTCAATCATTTTTACTTCTCTGGCTTGTGATTTAATAC
1 TTTTCATTTTCTGACTCGTGATTTAATCTCGATCATTTTTA-TTTTTTGACTCGTGATTTAAT-C
* * *
3471663 C-GATCATTTTCATTTTTTGACTCATGATTTAATCTCGATCG
64 CTGGTCATTTTCATTTTTTGACTCATGGTTTAATC-CAATCG
* * * * ** * * * *
3471704 TTTTCATTTTCTAAC-CTATGGTTTAATATC-AGTTGTTTTCT-TTTTTTGACCCATGGTTAAAT
1 TTTTCATTTTCTGACTC-GTGATTTAATCTCGA-TCATTTT-TATTTTTTGACTCGTGATTTAAT
* * * * * *
3471766 CCTGATCATTTTCATTTTTTGACTCGTGATTTAATCTAGGTCA
63 CCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCCA-ATCG
* * * * * *
3471809 TTTTTATTTTCT-AATATGTGTTTTAATCCCGATCATTTTTATTTTTTGACTCGTGATTTAATCT
1 TTTTCATTTTCTGACT-CGTGATTTAATCTCGATCATTTTTATTTTTTGACTCGTGATTTAATCC
* *
3471873 TGGTCATTTTCATTTTTTGACTCGTGGTTTAATTCCCATCG
65 TGGTCATTTTCATTTTTTGACTCATGGTTTAA-TCCAATCG
* * * * * * *
3471914 TTTTCATTTTTTGACTCGTGATTTAAT-TCTGGTCATTTTTATTTCTCTAATTCATGGTTTAATC
1 TTTTCATTTTCTGACTCGTGATTTAATCTC-GATCATTTTTATTT-TTTGACTCGTGATTTAAT-
** * *
3471978 CCT-GTTGTCTTCATTTTCTGACTCATGGTTTAATCTCGAAT-G
63 CCTGGTCATTTTCATTTTTTGACTCATGGTTTAATC-C-AATCG
* * * * * ** * *
3472020 TTTTTCATTTTTTGACTGGTGGTTTCATCTC-AGTC-GTTTTATTTGCTAACTTGT-AGTTTAAT
1 -TTTTCATTTTCTGACTCGTGATTTAATCTCGA-TCATTTTTATTTTTTGACTCGTGA-TTTAAT
** * * * *
3472082 CCCT-GTTGTTTTAATTTTTTGACTCATTGTTTAATCCTAGTCA
63 -CCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCC-AATCG
* * * * * * * * * * *
3472125 TTTTCAATTTT-AGACTCGTGGTTTAATTTTGGTTATTTTTGTTTTCTAACT-GATGATTAAATT
1 TTTTC-ATTTTCTGACTCGTGATTTAATCTCGATCATTTTTATTTTTTGACTCG-TGATTTAATC
* * * * *
3472188 TTGGTCATTTCCATTTCTTGACT-AGTGGTTTAATCCTAGTCA
64 CTGGTCATTTTCATTTTTTGACTCA-TGGTTTAATCC-AATCG
* * * * * *
3472230 TTTTCATTTTCTAACTCATGATTTGAT-TCTGGTCATTTTTCCTTTCTTTGACTCATGATTTAAT
1 TTTTCATTTTCTGACTCGTGATTTAATCTC-GATCATTTTT-ATTT-TTTGACTCGTGATTTAAT
*
3472294 GCC-AGTCATTTTC-TTTTTTGACT
63 -CCTGGTCATTTTCATTTTTTGACT
3472317 TGTCATTTAA
Statistics
Matches: 783, Mismatches: 195, Indels: 124
0.71 0.18 0.11
Matches are distributed among these distances:
103 2 0.00
104 92 0.12
105 376 0.48
106 150 0.19
107 80 0.10
108 6 0.01
109 1 0.00
110 4 0.01
111 32 0.04
112 39 0.05
114 1 0.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (104 bp):
TTTTCATTTTCTGACTCGTGATTTAATCTCGATCATTTTTATTTTTTGACTCGTGATTTAATCCT
GGTCATTTTCATTTTTTGACTCATGGTTTAATCCAATCG
Found at i:3472302 original size:37 final size:34
Alignment explanation
Indices: 3472216--3472316 Score: 96
Period size: 37 Copynumber: 2.9 Consensus size: 34
3472206 TGACTAGTGG
* *
3472216 TTTAAT-CCTAGTCATTTTCATTTTCTAACTCATGA
1 TTTAATGCC-AGTCATTTTC-TTTTTTGACTCATGA
* * **
3472251 TTTGATTCTGGTCATTTTTCCTTTCTTTGACTCATGA
1 TTTAATGCCAGTCA-TTTT-CTTT-TTTGACTCATGA
3472288 TTTAATGCCAGTCATTTTCTTTTTTGACT
1 TTTAATGCCAGTCATTTTCTTTTTTGACT
3472317 TGTCATTTAA
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
34 7 0.13
35 13 0.25
36 12 0.23
37 21 0.40
ACGTcount: A:0.19, C:0.19, G:0.10, T:0.52
Consensus pattern (34 bp):
TTTAATGCCAGTCATTTTCTTTTTTGACTCATGA
Found at i:3472304 original size:72 final size:70
Alignment explanation
Indices: 3472166--3472311 Score: 172
Period size: 72 Copynumber: 2.1 Consensus size: 70
3472156 GTTATTTTTG
* * *
3472166 TTTTCTAACTGATGATTAAATTTTGGTCATTTCCATTTCTTGACTAGTGGTTTAATCCTAGTCAT
1 TTTTCTAACTCATGATTAAATTCTGGTCATTTCCATTTCTTGACTAGTGATTTAATCCTAGTCAT
3472231 TTTCA
66 TTTCA
**
3472236 TTTTCTAACTCATGATTTGATTCTGGTCATTTTTCC-TTTCTTTGACTCA-TGATTTAATGCC-A
1 TTTTCTAACTCATGATTAAATTCTGGTCA--TTTCCATTTC-TTGACT-AGTGATTTAAT-CCTA
*
3472298 GTCATTTTCT
61 GTCATTTTCA
3472308 TTTT
1 TTTT
3472312 TGACTTGTCA
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
70 25 0.38
71 4 0.06
72 33 0.51
73 3 0.05
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (70 bp):
TTTTCTAACTCATGATTAAATTCTGGTCATTTCCATTTCTTGACTAGTGATTTAATCCTAGTCAT
TTTCA
Found at i:3472941 original size:37 final size:37
Alignment explanation
Indices: 3472900--3472980 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
3472890 TGACTCGTGA
*
3472900 TTTAATCTCAC-GTCATTTTCATTTTCTAACCCATCGG
1 TTTAATCTCACTATCATTTTCATTTTCTAACCCAT-GG
* *
3472937 TTTAAT-TCCCTATCATTTTCATTTTCTAACCTATGG
1 TTTAATCTCACTATCATTTTCATTTTCTAACCCATGG
3472973 TTTAATCT
1 TTTAATCT
3472981 TGGTCTTTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
36 11 0.28
37 28 0.72
ACGTcount: A:0.22, C:0.23, G:0.06, T:0.48
Consensus pattern (37 bp):
TTTAATCTCACTATCATTTTCATTTTCTAACCCATGG
Found at i:3473410 original size:35 final size:35
Alignment explanation
Indices: 3473367--3473464 Score: 110
Period size: 35 Copynumber: 2.8 Consensus size: 35
3473357 TTAATGTCGA
*
3473367 TCGCTTTCATTTTCTGACTTGTGGTTTAGTCCTAG
1 TCGCTTTCATTTTCTGACTTGTGGTTTAGTCCAAG
* * *
3473402 TGGTTTTCATTTTCTCG-TTTAG-GGTTTAGTCCAAG
1 TCGCTTTCATTTTCT-GACTT-GTGGTTTAGTCCAAG
* *
3473437 TCGCTTTCATTTTCTGACTCGTGCTTTA
1 TCGCTTTCATTTTCTGACTTGTGGTTTA
3473465 TTTTCGATCA
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
34 2 0.04
35 46 0.92
36 2 0.04
ACGTcount: A:0.12, C:0.19, G:0.19, T:0.49
Consensus pattern (35 bp):
TCGCTTTCATTTTCTGACTTGTGGTTTAGTCCAAG
Found at i:3473480 original size:35 final size:35
Alignment explanation
Indices: 3473441--3473525 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 35
3473431 TCCAAGTCGC
* * **
3473441 TTTCATTTTCTGACTCGTG-CTTTATTTTCGATCAT
1 TTTCATTTTCTGACTCGCGTCTTAATCCT-GATCAT
3473476 TTTCATTTT-TGAACTCGCGTCTTAATCCTGATCAT
1 TTTCATTTTCTG-ACTCGCGTCTTAATCCTGATCAT
3473511 TTTCA-TTTCTGACTC
1 TTTCATTTTCTGACTC
3473526 ATAATATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
34 9 0.21
35 28 0.65
36 6 0.14
ACGTcount: A:0.16, C:0.22, G:0.11, T:0.51
Consensus pattern (35 bp):
TTTCATTTTCTGACTCGCGTCTTAATCCTGATCAT
Found at i:3473614 original size:33 final size:34
Alignment explanation
Indices: 3473557--3473620 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 34
3473547 TCATTATCGT
* *
3473557 TTTCATTTTATGAGTCATGGTTTAATCTCAATTG
1 TTTCATTTTATGACTCATGATTTAATCTCAATTG
* *
3473591 TTTCA-TTTCTGACTCATGATTTAATTTCAA
1 TTTCATTTTATGACTCATGATTTAATCTCAA
3473621 CCATTTTTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 21 0.81
34 5 0.19
ACGTcount: A:0.25, C:0.14, G:0.11, T:0.50
Consensus pattern (34 bp):
TTTCATTTTATGACTCATGATTTAATCTCAATTG
Found at i:3473682 original size:35 final size:34
Alignment explanation
Indices: 3473643--3473735 Score: 114
Period size: 35 Copynumber: 2.6 Consensus size: 34
3473633 TTCTGGCTTG
*
3473643 TGATTTAATGCTGATCGTTTTCATTTTCCAACTCA
1 TGATTTAAT-CTGATCGTTTTCATTTTCCAACCCA
* *
3473678 TGATTTAATCTTGGTCGTTTTCATTTTCTAACCCA
1 TGATTTAATC-TGATCGTTTTCATTTTCCAACCCA
* *
3473713 TGGTTTAATCTCAGTCGTTTTCA
1 TGATTTAATCTGA-TCGTTTTCA
3473736 CCTATGGTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
34 2 0.04
35 48 0.96
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.47
Consensus pattern (34 bp):
TGATTTAATCTGATCGTTTTCATTTTCCAACCCA
Found at i:3473760 original size:27 final size:27
Alignment explanation
Indices: 3473698--3473762 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 27
3473688 TTGGTCGTTT
3473698 TCATTTTCTAACCCATGGTTTAATCTCAG
1 TCATTTTC--ACCCATGGTTTAATCTCAG
* *
3473727 TCGTTTTCACCTATGGTTTAATCTC-G
1 TCATTTTCACCCATGGTTTAATCTCAG
3473753 ATCATTTTCA
1 -TCATTTTCA
3473763 TTTTTTGACT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 1 0.03
27 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.23, G:0.11, T:0.45
Consensus pattern (27 bp):
TCATTTTCACCCATGGTTTAATCTCAG
Found at i:3473793 original size:35 final size:35
Alignment explanation
Indices: 3473740--3474313 Score: 201
Period size: 35 Copynumber: 16.6 Consensus size: 35
3473730 TTTTCACCTA
* * * *
3473740 TGGTTTAAT-CTCGATCATTTTCATTTTTTGACTTG
1 TGGTTTAATCCT-GGTCATTTTTATTTTCTGACTCG
* ** *
3473775 TGATTTAATCCAAGTCATTTTTATTTTCTAACAT-G
1 TGGTTTAATCCTGGTCATTTTTATTTTCTGAC-TCG
* * *
3473810 CGGTTTAATCCTGGTCATTTTTGTTTTCTGACTAG
1 TGGTTTAATCCTGGTCATTTTTATTTTCTGACTCG
* * *
3473845 TGATTTAATTCTGGTCATTTTTATTTCTCTAACTCG
1 TGGTTTAATCCTGGTCATTTTTATTT-TCTGACTCG
** * * *
3473881 TGGTTTAATCCCT-GTTGTCTTCATTTTTTGACTCG
1 TGGTTTAAT-CCTGGTCATTTTTATTTTCTGACTCG
* * * * *
3473916 TGGTTTAATCCCGATCGTTTTTCATTTT-TTAGCTAG
1 TGGTTTAATCCTGGTCATTTTT-ATTTTCTGA-CTCG
* * * * *
3473952 TGGTTTCATTCTTAGTCA--TTTA--TTCTAACTCA
1 TGGTTT-AATCCTGGTCATTTTTATTTTCTGACTCG
* * * *
3473984 TAG-TT-ATCCT-GTCATTTTAATTTTTTGACTCA
1 TGGTTTAATCCTGGTCATTTTTATTTTCTGACTCG
* * ** *
3474016 TGGTTTAATCCTTGTCATTTTCAGTTTT-AAACTTG
1 TGGTTTAATCCTGGTCATTTTTA-TTTTCTGACTCG
* ** ** * *
3474051 TGATTTAATTTTATTCATTTTTATTTTCTAACTCA
1 TGGTTTAATCCTGGTCATTTTTATTTTCTGACTCG
* * * * * *
3474086 TGATTTAATTCTAGTCATTTTCA-TTTCTTGAGTAG
1 TGGTTTAATCCTGGTCATTTTTATTTTC-TGACTCG
* * *
3474121 TGGTTTAATCCTGGTCATTTTCATTTTCTAACTCA
1 TGGTTTAATCCTGGTCATTTTTATTTTCTGACTCG
* * ** * **
3474156 TGATTTGATTTTGGTCATTTTT-TTTT-TTACTTA
1 TGGTTTAATCCTGGTCATTTTTATTTTCTGACTCG
* * * * * *
3474189 TGATTTAATGCCT-ATCATTTTCATTTTTTGAGTCA
1 TGGTTTAAT-CCTGGTCATTTTTATTTTCTGACTCG
** * ** * * *
3474224 TCATTTAATTCTGAACATTTTCATTTTTTGACTCA
1 TGGTTTAATCCTGGTCATTTTTATTTTCTGACTCG
* * *
3474259 TGGTTTAAT-CTCAGCCATTTTTATTTTCTGACACG
1 TGGTTTAATCCT-GGTCATTTTTATTTTCTGACTCG
* **
3474294 TGATTTAATTTTGGTCATTT
1 TGGTTTAATCCTGGTCATTT
3474314 CATTTTTTAA
Statistics
Matches: 402, Mismatches: 110, Indels: 54
0.71 0.19 0.10
Matches are distributed among these distances:
28 4 0.01
29 3 0.01
30 3 0.01
31 2 0.00
32 16 0.04
33 24 0.06
34 30 0.07
35 264 0.66
36 49 0.12
37 7 0.02
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.52
Consensus pattern (35 bp):
TGGTTTAATCCTGGTCATTTTTATTTTCTGACTCG
Found at i:3473937 original size:71 final size:67
Alignment explanation
Indices: 3473759--3473943 Score: 167
Period size: 71 Copynumber: 2.6 Consensus size: 67
3473749 CTCGATCATT
* *
3473759 TTCATTTTTTGACTTGTGATTTAATCCAAGTCATTTTTATTTTCTAACATGCGGTTTAATCCTGG
1 TTCATTTTTTGACTAGTGATTTAATCCGA-TCATTTTTATTTTCTAACATGCGGTTTAATCCTGG
3473824 TCA
65 TCA
** * * *
3473827 TTTTTGTTTTCTGACTAGTGATTTAATTCTGGTCATTTTTATTTCTCTAAC-TCGTGGTTTAATC
1 TTCAT-TTTT-TGACTAGTGATTTAA-TCCGATCATTTTTATTT-TCTAACAT-GCGGTTTAAT-
3473891 CCTGTTGTC-
60 CCTG--GTCA
* * *
3473900 TTCATTTTTTGACTCGTGGTTTAATCCCGATCGTTTTTCATTTT
1 TTCATTTTTTGACTAGTGATTTAAT-CCGATCATTTTT-ATTTT
3473944 TTAGCTAGTG
Statistics
Matches: 93, Mismatches: 14, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
68 3 0.03
69 4 0.04
70 28 0.30
71 40 0.43
72 12 0.13
73 3 0.03
74 3 0.03
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (67 bp):
TTCATTTTTTGACTAGTGATTTAATCCGATCATTTTTATTTTCTAACATGCGGTTTAATCCTGGT
CA
Found at i:3473955 original size:36 final size:35
Alignment explanation
Indices: 3473880--3473957 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 35
3473870 TCTCTAACTC
*
3473880 GTGGTTTAATCCCTGTTGTCTTCATTTTTTGACTC
1 GTGGTTTAATCCCTGTTGTCTTCATTTTTTGACTA
3473915 GTGGTTTAATCCCGATCGTT-T-TTCATTTTTT-AGCTA
1 GTGGTTTAATCCC--T-GTTGTCTTCATTTTTTGA-CTA
3473951 GTGGTTT
1 GTGGTTT
3473958 CATTCTTAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
35 14 0.37
36 19 0.50
37 2 0.05
38 3 0.08
ACGTcount: A:0.13, C:0.17, G:0.19, T:0.51
Consensus pattern (35 bp):
GTGGTTTAATCCCTGTTGTCTTCATTTTTTGACTA
Found at i:3474126 original size:105 final size:104
Alignment explanation
Indices: 3473775--3474321 Score: 334
Period size: 103 Copynumber: 5.3 Consensus size: 104
3473765 TTTTGACTTG
* * * * **
3473775 TGATTTAATCCAAGTCATTTTTATTTTCT-A-ACATGCGGTTTAATCCTGGTCATTTTTGTTTTC
1 TGATTTAATCCTAGTCATTTTCATTTTTTGAGTCAT--GGTTTAATCCTGGTCATTTTCATTTTC
** * * *
3473838 TGACT-AGTGATTTAATTCTGGTCATTTTTATTTCTCTAACTCG
64 AAACTCA-TGATTTAATTTTAGTCATTTTT-TTT-TCTAACTCA
* ** * * * * * * *
3473881 TGGTTTAATCCCT-GTTGTCTTCATTTTTTGACTCGTGGTTTAATCCCGATCGTTTTTCATTTTT
1 TGATTTAAT-CCTAGTCATTTTCATTTTTTGAGTCATGGTTTAATCCTGGTC-ATTTTCATTTTC
* * * * *
3473945 TAGCT-AGTGGTTTCATTCTTAGTCA---TTTATTCTAACTCA
64 AAACTCA-TGATTTAATT-TTAGTCATTTTTTTTTCTAACTCA
* * * *
3473984 T-AGTT-ATCCT-GTCATTTTAATTTTTTGACTCATGGTTTAATCCTTGTCATTTTCAGTTTT-A
1 TGATTTAATCCTAGTCATTTTCATTTTTTGAGTCATGGTTTAATCCTGGTCATTTTCA-TTTTCA
** *
3474045 AACTTGTGATTTAATTTTATTCATTTTTATTTTCTAACTCA
65 AACTCATGATTTAATTTTAGTCATTTTT-TTTTCTAACTCA
* * *
3474086 TGATTTAATTCTAGTCATTTTCATTTCTTGAGT-AGTGGTTTAATCCTGGTCATTTTCATTTTCT
1 TGATTTAATCCTAGTCATTTTCATTTTTTGAGTCA-TGGTTTAATCCTGGTCATTTTCATTTTCA
* * * *
3474150 AACTCATGATTTGATTTTGGTCATTTTTTTTT-TTACTTA
65 AACTCATGATTTAATTTTAGTCATTTTTTTTTCTAACTCA
** * ** **
3474189 TGATTTAATGCCTA-TCATTTTCATTTTTTGAGTCATCATTTAATTCTGAACATTTTCATTTTTT
1 TGATTTAAT-CCTAGTCATTTTCATTTTTTGAGTCATGGTTTAATCCTGGTCATTTTCATTTTCA
* * * * * * * *
3474253 GACTCATGGTTTAATCTCAGCCATTTTTATTTTCTGACACG
65 AACTCATGATTTAATTTTAGTCATTTTT-TTTTCTAACTCA
** *
3474294 TGATTTAATTTTGGTCA-TTTCATTTTTT
1 TGATTTAATCCTAGTCATTTTCATTTTTT
3474322 AACTCGCATT
Statistics
Matches: 343, Mismatches: 77, Indels: 44
0.74 0.17 0.09
Matches are distributed among these distances:
98 6 0.02
99 17 0.05
100 37 0.11
101 4 0.01
102 14 0.04
103 88 0.26
104 35 0.10
105 79 0.23
106 32 0.09
107 24 0.07
108 7 0.02
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (104 bp):
TGATTTAATCCTAGTCATTTTCATTTTTTGAGTCATGGTTTAATCCTGGTCATTTTCATTTTCAA
ACTCATGATTTAATTTTAGTCATTTTTTTTTCTAACTCA
Found at i:3474243 original size:138 final size:138
Alignment explanation
Indices: 3474065--3474322 Score: 315
Period size: 138 Copynumber: 1.9 Consensus size: 138
3474055 TTAATTTTAT
* * * *
3474065 TCATTTTTATTTTCTAACTCATGATTTAATTCTAGTCATTTTCATTTCTTGAGT-AGTGGTTTAA
1 TCATTTTCATTTTCTAACTCATCATTTAATTCTAGACATTTTCATTTCTTGACTCA-TGGTTTAA
* * * * **
3474129 TC-CTGGTCATTTTCATTTTCTAACTCATGATTTGATTTTGGTCATTTTTTTTTTTACTTATGAT
65 TCTC-AGCCATTTTCATTTTCTAACACATGATTTAATTTTGGTCATTTCATTTTTTACTTATGAT
3474193 TTAATGCCTA
129 TTAATGCCTA
* * * *
3474203 TCATTTTCATTTTTTGAGTCATCATTTAATTCT-GAACATTTTCATTTTTTGACTCATGGTTTAA
1 TCATTTTCATTTTCTAACTCATCATTTAATTCTAG-ACATTTTCATTTCTTGACTCATGGTTTAA
* * *
3474267 TCTCAGCCATTTTTATTTTCTGACACGTGATTTAATTTTGGTCATTTCATTTTTTA
65 TCTCAGCCATTTTCATTTTCTAACACATGATTTAATTTTGGTCATTTCATTTTTTA
3474323 ACTCGCATTT
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
137 1 0.01
138 97 0.97
139 2 0.02
ACGTcount: A:0.21, C:0.14, G:0.10, T:0.54
Consensus pattern (138 bp):
TCATTTTCATTTTCTAACTCATCATTTAATTCTAGACATTTTCATTTCTTGACTCATGGTTTAAT
CTCAGCCATTTTCATTTTCTAACACATGATTTAATTTTGGTCATTTCATTTTTTACTTATGATTT
AATGCCTA
Found at i:3474677 original size:100 final size:103
Alignment explanation
Indices: 3474389--3474717 Score: 301
Period size: 106 Copynumber: 3.2 Consensus size: 103
3474379 ATTTTTATTA
* ** * * * *
3474389 TCATTTTCATTTTTTGACTTATGGTTTAATCTCGATCGTTTTCATTTTCTAACTTGTGATTTAAT
1 TCATTTTCATTTTCTGACCCATGATTTAATCTCGGTC-ATTT-ATTTTCTAACTTGTGGTTTAAT
** * * * * * *
3474454 TTTGATCATTTTTATTTCTCTGGCTTGTGATTTAATATCGA
64 CCTGATCGTTTTTATTT-TTTGGCTCGTGATTTAATCTAGG
* ***
3474495 TCATTTTCATTTTCTGACTCATGATTTAATCTCGGTCATTTTCATTTTCTAACCCATGGTTTAAT
1 TCATTTTCATTTTCTGACCCATGATTTAATCTCGGTCA-TTT-ATTTTCTAACTTGTGGTTTAAT
* * *
3474560 CCTAGAT-GTTTTCATTTTTTGGCCCATGATTTAATCTAGG
64 CCT-GATCGTTTTTATTTTTTGGCTCGTGATTTAATCTAGG
*
3474600 TCATTTT-ATTTTCTGGCCCATGATTTAATC-CGAGTCA-TT-TTTTCTAACTTGTGGTTTAATC
1 TCATTTTCATTTTCTGACCCATGATTTAATCTCG-GTCATTTATTTTCTAACTTGTGGTTTAATC
* * * *
3474661 CTGGTCGTTTTTATTTTTTGACTCGTGGTTTAATCTTGG
65 CTGATCGTTTTTATTTTTTGGCTCGTGATTTAATCTAGG
3474700 TCATTTTCACTTTT-TGAC
1 TCATTTTCA-TTTTCTGAC
3474718 TTATGGTTTA
Statistics
Matches: 184, Mismatches: 33, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
99 2 0.01
100 55 0.30
101 4 0.02
102 6 0.03
103 2 0.01
104 25 0.14
105 23 0.12
106 64 0.35
107 3 0.02
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.51
Consensus pattern (103 bp):
TCATTTTCATTTTCTGACCCATGATTTAATCTCGGTCATTTATTTTCTAACTTGTGGTTTAATCC
TGATCGTTTTTATTTTTTGGCTCGTGATTTAATCTAGG
Found at i:3474783 original size:35 final size:35
Alignment explanation
Indices: 3474389--3476142 Score: 309
Period size: 35 Copynumber: 49.9 Consensus size: 35
3474379 ATTTTTATTA
** *
3474389 TCATTTTCATTTTTTGACTTATGGTTTAATCTC-G
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * * * **
3474423 ATCGTTTTCATTTTCTAACTTGTGATTTAAT-TTTG
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * * * **
3474458 ATCATTTTTATTTCTCTGGCTTGTGATTTAATATC-G
1 -TCATTTTCATTT-TTTGACTCGTGGTTTAATCCCTG
* * * * *
3474494 ATCATTTTCATTTTCTGACTCATGATTTAATCTCGG
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * *
3474530 TCATTTTCATTTTCTAACCCATGGTTTAAT-CCTAG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCT-G
* * * * * ***
3474565 AT-GTTTTCATTTTTTGGCCCATGATTTAATCTAGG
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * * * **
3474600 TCATTTT-ATTTTCTGGCCCATGATTTAATCCGAG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * *
3474634 TCA--TT--TTTTCTAACTTGTGGTTTAAT-CCTGG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCT-G
* * *
3474665 TCGTTTTTATTTTTTGACTCGTGGTTTAAT-CTTGG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCT-G
* ** *
3474700 TCATTTTCACTTTTTGACTTATGGTTTAATCCCTA
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
** * * *
3474735 TTGTTTTATATTTTTTGACTCGTGCTTTAATCTCTG
1 TCATTTT-CATTTTTTGACTCGTGGTTTAATCCCTG
* * * *
3474771 TCGTTTTCA-TTTTTCAAT-GTGTTGTTTAATCCCTA
1 TCATTTTCATTTTTTGACTCGTG--GTTTAATCCCTG
* * * * *
3474806 TCATTTTTATTTTTTGACTCATGATTTATTCCCAG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* **
3474841 TCATTTTCTTTTTTTGACTCGTGGTACAAT-CCTAG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCT-G
* * * **
3474876 TCATTTTTCAATTTTTGACTCATCGTTTAATCCCAA
1 TCA-TTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * *
3474912 TCACTTTT-ATTTTCTAACTCGTAGTTTAAT-GCTAG
1 TCA-TTTTCATTTTTTGACTCGTGGTTTAATCCCT-G
** * * * * **
3474947 TGGTTTTCATTTTCTCACTAAG-GGTTTAGTCCCAA
1 TCATTTTCATTTTTTGACT-CGTGGTTTAATCCCTG
* * * **
3474982 TTATTTTCATTTTTTGACTCATGCTTTAATTTC-G
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
** * * * *
3475016 ATTGTTTTCATTTTTTAACTCATGTTTTAATCCCGG
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * * * *** *
3475052 TCATTTTTATTTTATGACACGTAATTTAGTTTCTATAATTT
1 TCATTTTCATTTTTTGACTCG-----TGGTTT-AATCCCTG
* * * **
3475093 TCATTATCATTTTCTTTTTTTGACTGGTGGTTTAATAATCTCAA
1 TC---AT--TTT-CATTTTTTGACTCGTGG-TT--TAATCCCTG
* * ** **
3475137 TCATTTTCA-TTTTTGAACTCATGATGCAATTTC-G
1 TCATTTTCATTTTTTG-ACTCGTGGTTTAATCCCTG
* * * * * * **
3475171 ATCATTTTTATTTCTCTGGCTTGTGATTTAATACCAA
1 -TCATTTTCATTT-TTTGACTCGTGGTTTAATCCCTG
* * * * *
3475208 TCATTTTCATTTTTTAACTTGTGATTTAATCTCAG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * * * * *
3475243 TTA-TTT--TTTTCTAACCCATGGTTTAATCTCAG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * * * * *
3475275 TCGTTTTTATTTTCTAACCCATGGTTTAATCTC-G
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * * **
3475309 ATCATTTTCATTTTTTGGCTCATGATTTAATTCGAG
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* ** * *
3475345 TCATTTTTATTTTTT-ACTTATGATTTAAT-AC-G
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * *
3475377 ATC-GTTT-ATTTTTTGACTCGTGATTTAATCTC-G
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * *
3475410 ATCA-TTTCA-TTTCTGACTTGT-GTTTAAT-TCTCA
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATCCCT-G
* * * * **
3475443 TCATTTTCATTTTCTAACTCATTGATTTAAT-TTTGG
1 TCATTTTCATTTTTTGACTC-GTGGTTTAATCCCT-G
* * **
3475479 TCATTTT-ATTCCTCTGACTCGTGGTTTAATCCCCA
1 TCATTTTCATT-TTTTGACTCGTGGTTTAATCCCTG
** * * * *
3475514 TTGTCTTCATTTTTTGACTCATAGTTTAAT-CTTG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * *
3475548 ATCATTTTTCATTTTCTGACTAGTGGTTTCAT-CTTAG
1 -TCA-TTTTCATTTTTTGACTCGTGGTTTAATCCCT-G
* * * *
3475585 TCATTTTCACTCTCTGACTCATGGTTTAATCCCTG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
** * ** *
3475620 TTGTTTTAATTTCCTGACTCGTGATTTAAT-CCTAG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCT-G
* * * * ** *
3475655 TCATTTTTAGTTTTAGACTCGTGATTTAATTTCGG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * *
3475690 TTATTTT--TTTTTTGACTCATGATTTAAT-TCTG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * *
3475722 ATCGTTTTCGTTTCTTGACTAGTGGTTTAAT-CCTG
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* * * * * * *
3475757 ATCATTTTTATTTTTTGATTCATGATTTGAT-TCTAA
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATCCCT-G
* * * *
3475793 TCATTTTTATTTCTTTGACTCATGATTTAAT-GCTGG
1 TCATTTTCATTT-TTTGACTCGTGGTTTAATCCCT-G
* * **
3475829 TCATTTTCATTTTTTGACTCATTGTTTAAT-TATG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* *
3475863 ATCATTTTCATTTTTTGACTTGTGGTTTAAT-CTTG
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
* ** *
3475898 ATCATTTTCACTTTTTGACTTATGGTTTAATCCCTA
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
** * * * *
3475934 TTGTTTTACATTTTCTAACTCATGCTTTAATCCCTG
1 TCATTTT-CATTTTTTGACTCGTGGTTTAATCCCTG
* * * **
3475970 TCGTTTTCATTTTTCGA-TGCATTATTTAATCCCTGG
1 TCATTTTCATTTTTTGACT-CGTGGTTTAATCCCT-G
* * * * *
3476006 TCATTTTTATTTTTTGAGTCATGATTTTAT-CCTGG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCT-G
* * * *
3476041 TCATTTTCATTTTTTGACTCATGGTATAGT-CTTGG
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCCT-G
* * ** ** *
3476076 TCGTTTTTCATTTTTTGACTTGTCATTTCCT-CTTG
1 TC-ATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
*
3476111 ATCACTTTCATTTTTTGACTCGTGGTTTAATC
1 -TCATTTTCATTTTTTGACTCGTGGTTTAATC
3476143 TTGGTGGTTT
Statistics
Matches: 1280, Mismatches: 351, Indels: 175
0.71 0.19 0.10
Matches are distributed among these distances:
30 1 0.00
31 27 0.02
32 52 0.04
33 56 0.04
34 74 0.06
35 726 0.57
36 285 0.22
37 17 0.01
38 6 0.00
39 3 0.00
40 4 0.00
41 6 0.00
42 2 0.00
43 2 0.00
44 6 0.00
45 1 0.00
46 3 0.00
47 9 0.01
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (35 bp):
TCATTTTCATTTTTTGACTCGTGGTTTAATCCCTG
Found at i:3474854 original size:70 final size:71
Alignment explanation
Indices: 3474668--3474854 Score: 182
Period size: 71 Copynumber: 2.7 Consensus size: 71
3474658 ATCCTGGTCG
* * *** * * * *
3474668 TTTT-TATTTTTTGACTCGTGGTTTAATCTTGGTCATTTTCACTTTTTGACT-TATGGTTTAATC
1 TTTTATATTTTTTGACTCATGATTTAATCCCAGTCATTTTCA-TTTTTCAATGTGTTGTTTAATC
**
3474731 CCTATTG
65 CCTATCA
* * * * *
3474738 TTTTATATTTTTTGACTCGTGCTTTAATCTCTGTCGTTTTCATTTTTCAATGTGTTGTTTAATCC
1 TTTTATATTTTTTGACTCATGATTTAATCCCAGTCATTTTCATTTTTCAATGTGTTGTTTAATCC
3474803 CTATCA
66 CTATCA
* *
3474809 TTTT-TATTTTTTGACTCATGATTTATTCCCAGTCATTTTCTTTTTT
1 TTTTATATTTTTTGACTCATGATTTAATCCCAGTCATTTTCATTTTT
3474855 TGACTCGTGG
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
70 46 0.47
71 52 0.53
ACGTcount: A:0.16, C:0.16, G:0.11, T:0.57
Consensus pattern (71 bp):
TTTTATATTTTTTGACTCATGATTTAATCCCAGTCATTTTCATTTTTCAATGTGTTGTTTAATCC
CTATCA
Found at i:3474932 original size:71 final size:69
Alignment explanation
Indices: 3474802--3474933 Score: 160
Period size: 71 Copynumber: 1.9 Consensus size: 69
3474792 TTGTTTAATC
* * * * * *
3474802 CCTATCATTTTTATTTTTTGACTCATGATTTATTCCCAGTCATTTTCTTTTTTTGACTCGTGGTA
1 CCTATCATTTTTAATTTTTGACTCATGATTTAATCCCAATCATTTTCATTTTCTAACTCGTGGTA
3474867 CAAT
66 CAAT
3474871 CCTAGTCATTTTTCAATTTTTGACTCATCG-TTTAATCCCAATCACTTTT-ATTTTCTAACTCGT
1 CCTA-TCATTTTT-AATTTTTGACTCAT-GATTTAATCCCAATCA-TTTTCATTTTCTAACTCGT
3474934 AGTTTAATGC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
69 4 0.08
70 8 0.15
71 36 0.68
72 5 0.09
ACGTcount: A:0.20, C:0.21, G:0.08, T:0.50
Consensus pattern (69 bp):
CCTATCATTTTTAATTTTTGACTCATGATTTAATCCCAATCATTTTCATTTTCTAACTCGTGGTA
CAAT
Found at i:3475401 original size:32 final size:34
Alignment explanation
Indices: 3475318--3475405 Score: 101
Period size: 34 Copynumber: 2.6 Consensus size: 34
3475308 GATCATTTTC
* * *
3475318 ATTTTTTGGCTCATGATTTAATTCGAGTCATTTTT
1 ATTTTTTGACTCATGATTTAATACGAGTCA-GTTT
*
3475353 ATTTTTT-ACTTATGATTTAATACGA-TC-GTTT
1 ATTTTTTGACTCATGATTTAATACGAGTCAGTTT
*
3475384 ATTTTTTGACTCGTGATTTAAT
1 ATTTTTTGACTCATGATTTAAT
3475406 CTCGATCATT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
31 10 0.22
32 12 0.26
33 2 0.04
34 15 0.33
35 7 0.15
ACGTcount: A:0.23, C:0.10, G:0.12, T:0.55
Consensus pattern (34 bp):
ATTTTTTGACTCATGATTTAATACGAGTCAGTTT
Found at i:3475436 original size:32 final size:34
Alignment explanation
Indices: 3475128--3476063 Score: 355
Period size: 35 Copynumber: 26.9 Consensus size: 34
3475118 GGTGGTTTAA
* *
3475128 TAATCTCAATCATTTTCATTTTTGAACTCATGATG
1 TAATCTCGATCATTTTCATTTTTG-ACTCATGATT
* * * * **
3475163 CAATTTCGATCATTTTTATTTCTCTGGCTTGTGATT
1 TAATCTCGATCATTTTCATTT-T-TGACTCATGATT
* * **
3475199 TAATAC-CAATCATTTTCATTTTTTAACTTGTGATT
1 TAAT-CTCGATCATTTTCA-TTTTTGACTCATGATT
* * * * *
3475234 TAATCTC-AGTTATTTT--TTTCTAACCCATGGTT
1 TAATCTCGA-TCATTTTCATTTTTGACTCATGATT
* * * * *
3475266 TAATCTC-AGTCGTTTTTATTTTCTAACCCATGGTT
1 TAATCTCGA-TCATTTTCATTTT-TGACTCATGATT
*
3475301 TAATCTCGATCATTTTCATTTTTTGGCTCATGATT
1 TAATCTCGATCATTTTCA-TTTTTGACTCATGATT
* * *
3475336 TAAT-TCGAGTCATTTTTATTTTTTACTTATGATT
1 TAATCTCGA-TCATTTTCATTTTTGACTCATGATT
* * *
3475370 TAAT-ACGATC-GTTT-ATTTTTTGACTCGTGATT
1 TAATCTCGATCATTTTCA-TTTTTGACTCATGATT
* **
3475402 TAATCTCGATCA-TTTCATTTCTGACTTGTG-TT
1 TAATCTCGATCATTTTCATTTTTGACTCATGATT
*
3475434 TAATTCTC-ATCATTTTCATTTTCTAACTCATTGATT
1 TAA-TCTCGATCATTTTCATTTT-TGACTCA-TGATT
* * * * * *
3475470 TAATTTTGGTCATTTT-ATTCCTCTGACTCGTGGTT
1 TAATCTCGATCATTTTCATT--TTTGACTCATGATT
* * ** *
3475505 TAATCCCCATTGTCTTCATTTTTTGACTCAT-AGTT
1 TAATCTCGATCATTTTCA-TTTTTGACTCATGA-TT
* *
3475540 TAATCTTGATCATTTTTCATTTTCTGACT-AGTGGTT
1 TAATCTCGATCA-TTTTCATTTT-TGACTCA-TGATT
* * * * *
3475576 TCATCT-TAGTCATTTTCACTCTCTGACTCATGGTT
1 TAATCTCGA-TCATTTTCA-TTTTTGACTCATGATT
* ** * * *
3475611 TAATCCCTG-TTGTTTTAATTTCCTGACTCGTGATT
1 TAATCTC-GATCATTTTCATTT-TTGACTCATGATT
* * * *
3475646 TAATC-CTAGTCATTTTTAGTTTTAGACTCGTGATT
1 TAATCTCGA-TCATTTTCA-TTTTTGACTCATGATT
* * * *
3475681 TAATTTCGGTTATTTT-TTTTTTGACTCATGATT
1 TAATCTCGATCATTTTCATTTTTGACTCATGATT
* * *
3475714 TAAT-TCTGATCGTTTTCGTTTCTTGACT-AGTGGTT
1 TAATCTC-GATCATTTTCATTT-TTGACTCA-TGATT
* *
3475749 TAATC-CTGATCATTTTTATTTTTTGATTCATGATT
1 TAATCTC-GATCATTTTCA-TTTTTGACTCATGATT
* * *
3475784 TGAT-TCTAATCATTTTTATTTCTTTGACTCATGATT
1 TAATCTC-GATCATTTTCA-TT-TTTGACTCATGATT
*
3475820 TAATGCT-GGTCATTTTCATTTTTTGACTCATTG-TT
1 TAAT-CTCGATCATTTTCA-TTTTTGACTCA-TGATT
* ** *
3475855 TAAT-TATGATCATTTTCATTTTTTGACTTGTGGTT
1 TAATCT-CGATCATTTTCA-TTTTTGACTCATGATT
* * *
3475890 TAATCTTGATCATTTTCACTTTTTGACTTATGGTT
1 TAATCTCGATCATTTTCA-TTTTTGACTCATGATT
* * ** * *
3475925 TAATCCCTATTGTTTTACATTTTCTAACTCATGCTT
1 TAATCTCGATCATTTT-CATTTT-TGACTCATGATT
* * *
3475961 TAATCCCTG-TCGTTTTCATTTTTCGA-TGCATTATT
1 TAATCTC-GATCATTTTCATTTTT-GACT-CATGATT
* * * *
3475996 TAATCCCTGGTCATTTTTATTTTTTGAGTCATGATT
1 TAATCTC-GATCATTTTCA-TTTTTGACTCATGATT
* *
3476032 TTATC-CTGGTCATTTTCATTTTTTGACTCATG
1 TAATCTC-GATCATTTTCA-TTTTTGACTCATG
3476064 GTATAGTCTT
Statistics
Matches: 699, Mismatches: 137, Indels: 130
0.72 0.14 0.13
Matches are distributed among these distances:
31 1 0.00
32 56 0.08
33 58 0.08
34 45 0.06
35 375 0.54
36 149 0.21
37 14 0.02
38 1 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (34 bp):
TAATCTCGATCATTTTCATTTTTGACTCATGATT
Found at i:3475638 original size:106 final size:103
Alignment explanation
Indices: 3475313--3475982 Score: 344
Period size: 106 Copynumber: 6.4 Consensus size: 103
3475303 ATCTCGATCA
* * *
3475313 TTTTCATTTTTTGGCTCATGATTTAATTC-GAGTCATTTTT-ATTTT-TTACTTA-TGATTTAA-
1 TTTTCATTTTTTGACTCATG-TTTAATCCTGA-TCATTTTTCATTTTCTGAC-TAGTGATTTAAT
* * * * * * *
3475373 -TACGATC-GTTTATTTTTTGACTCGTGATTTAATCTC-GATC
63 TTA-G-TCATTTTATTCTTTGACTCATGGTTTAATCCCTGTTG
* * ** * * * *
3475413 ATTTCA-TTTCTGACTTGTGTTTAATTCTCATCA-TTTTCATTTTCTAACTCATTGATTTAATTT
1 TTTTCATTTTTTGACTCATGTTTAATCCTGATCATTTTTCATTTTCTGACT-AGTGATTTAA-TT
* * * **
3475476 TGGTCATTTTATTCCTCTGACTCGTGGTTTAATCCCCATTG
64 TAGTCATTTTATT-CTTTGACTCATGGTTTAATCCCTGTTG
* * * *
3475517 TCTTCATTTTTTGACTCATAGTTTAATCTTGATCATTTTTCATTTTCTGACTAGTGGTTTCATCT
1 TTTTCATTTTTTGACTCAT-GTTTAATCCTGATCATTTTTCATTTTCTGACTAGTGATTTAAT-T
* *
3475582 TAGTCATTTTCACTCTCTGACTCATGGTTTAATCCCTGTTG
64 TAGTCATTTT-ATTCTTTGACTCATGGTTTAATCCCTGTTG
* ** * * *
3475623 TTTTAATTTCCTGACTCGTGATTTAATCCT-AGTCATTTTT-AGTTTT-AGACTCGTGATTTAAT
1 TTTTCATTTTTTGACTCATG-TTTAATCCTGA-TCATTTTTCA-TTTTCTGACTAGTGATTTAAT
* * * * * *
3475685 TTCGGTTATTTT-TTTTTTGACTCATGATTTAAT-TCTGATCG
63 TT-AGTCATTTTATTCTTTGACTCATGGTTTAATCCCTG-TTG
* * * * *
3475726 TTTTCGTTTCTTGACT-AGTGGTTTAATCCTGATCATTTTT-ATTTTTTGATTCA-TGATTTGAT
1 TTTTCATTTTTTGACTCA-T-GTTTAATCCTGATCATTTTTCATTTTCTGACT-AGTGATTTAAT
* * * **
3475788 TCTAATCATTTTTATTTCTTTGACTCATGATTTAAT-GCTGGTCA
63 T-TAGTCA-TTTTA-TTCTTTGACTCATGGTTTAATCCCT-GTTG
** * * *
3475832 TTTTCATTTTTTGACTCATTGTTTAATTATGATCA-TTTTCATTTTTTGACTTGTGGTTTAATCT
1 TTTTCATTTTTTGACTCA-TGTTTAATCCTGATCATTTTTCATTTTCTGACTAGTGATTTAAT-T
* *
3475896 T-GATCATTTTCACTT-TTTGACTTATGGTTTAATCCCTATTG
64 TAG-TCATTTT-A-TTCTTTGACTCATGGTTTAATCCCTGTTG
* * *
3475937 TTTTACATTTTCTAACTCATGCTTTAATCCCTG-TC-GTTTTCATTTT
1 TTTT-CATTTTTTGACTCATG-TTTAAT-CCTGATCATTTTTCATTTT
3475983 TCGATGCATT
Statistics
Matches: 442, Mismatches: 86, Indels: 78
0.73 0.14 0.13
Matches are distributed among these distances:
97 4 0.01
98 17 0.04
99 14 0.03
100 13 0.03
101 2 0.00
102 14 0.03
103 84 0.19
104 14 0.03
105 63 0.14
106 194 0.44
107 23 0.05
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (103 bp):
TTTTCATTTTTTGACTCATGTTTAATCCTGATCATTTTTCATTTTCTGACTAGTGATTTAATTTA
GTCATTTTATTCTTTGACTCATGGTTTAATCCCTGTTG
Found at i:3475741 original size:103 final size:106
Alignment explanation
Indices: 3475171--3475870 Score: 283
Period size: 106 Copynumber: 6.7 Consensus size: 106
3475161 TGCAATTTCG
* * ** * ** * * *
3475171 ATCATTTTTATTTCTCTGGCTTGTGATTTAATACCAATCATTTTCATTTTTTAACTTGTGATTTA
1 ATCATTTTTATTTCTTTGACTCATGATTTAATGCTGATCATTTTCATTTCTTGACTCGTGATTTA
* * * * *
3475236 AT-CTCAGTTATTTTT--TTCTA-ACCCATGGTTTAA-TCTCA
66 ATCCTGA-TCATTTTTAGTTTTAGACTCATGATTTAATTCT-A
* * * * * * * * *
3475274 GTCGTTTTTATTT-TCTAACCCATGGTTTAAT-CTCGATCATTTTCATTTTTTGGCTCATGATTT
1 ATCATTTTTATTTCTTTGACTCATGATTTAATGCT-GATCATTTTCATTTCTTGACTCGTGATTT
* ** * * *
3475337 AATTC-GAGTCATTTTTA-TTTTTTACTTATGATTTAATAC-G
65 AATCCTGA-TCATTTTTAGTTTTAGACTCATGATTTAATTCTA
* * *
3475377 ATC--GTTTATTT-TTTGACTCGTGATTTAAT-CTCGATCA-TTTCATTTC-TGACTTGTG-TTT
1 ATCATTTTTATTTCTTTGACTCATGATTTAATGCT-GATCATTTTCATTTCTTGACTCGTGATTT
* * * * * *
3475435 AATTCTCATCATTTTCATTTTCTA-ACTCATTGATTTAATTTTG
65 AATCCTGATCATTTTTAGTTT-TAGACTCA-TGATTTAATTCTA
* * * * * * ** ** * * *
3475478 GTCA-TTTTATTCCTCTGACTCGTGGTTTAATCCCCATTGTCTTCATTTTTTGACTCAT-AGTTT
1 ATCATTTTTATTTCTTTGACTCATGATTTAATGCTGATCATTTTCATTTCTTGACTCGTGA-TTT
* * * *
3475541 AATCTTGATCATTTTTCA-TTTTCTGACT-AGTGGTTTCA-TCTTA
65 AATCCTGATCATTTTT-AGTTTT-AGACTCA-TGATTTAATTC-TA
* * * * * * ** * *
3475584 GTCATTTTCA-CTCTCTGACTCATGGTTTAATCCCTG-TTGTTTTAATTTCCTGACTCGTGATTT
1 ATCATTTTTATTTCTTTGACTCATGATTTAAT-GCTGATCATTTTCATTTCTTGACTCGTGATTT
* *
3475647 AATCCT-AGTCATTTTTAGTTTTAGACTCGTGATTTAATT-TCG
65 AATCCTGA-TCATTTTTAGTTTTAGACTCATGATTTAATTCT-A
* * * * * * *
3475689 GTTA-TTTT-TTT-TTTGACTCATGATTTAATTCTGATCGTTTTCGTTTCTTGACTAGTGGTTTA
1 ATCATTTTTATTTCTTTGACTCATGATTTAATGCTGATCATTTTCATTTCTTGACTCGTGATTTA
* * * *
3475751 ATCCTGATCATTTTTATTTTTTGATTCATGATTTGATTCTA
66 ATCCTGATCATTTTTAGTTTTAGACTCATGATTTAATTCTA
* * *
3475792 ATCATTTTTATTTCTTTGACTCATGATTTAATGCTGGTCATTTTCATTTTTTGACTCATTG-TTT
1 ATCATTTTTATTTCTTTGACTCATGATTTAATGCTGATCATTTTCATTTCTTGACTC-GTGATTT
**
3475856 AATTATGATCATTTT
65 AATCCTGATCATTTT
3475871 CATTTTTTGA
Statistics
Matches: 451, Mismatches: 109, Indels: 71
0.71 0.17 0.11
Matches are distributed among these distances:
98 16 0.04
99 14 0.03
100 18 0.04
101 32 0.07
102 57 0.13
103 106 0.24
104 29 0.06
105 27 0.06
106 139 0.31
107 13 0.03
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (106 bp):
ATCATTTTTATTTCTTTGACTCATGATTTAATGCTGATCATTTTCATTTCTTGACTCGTGATTTA
ATCCTGATCATTTTTAGTTTTAGACTCATGATTTAATTCTA
Found at i:3475881 original size:141 final size:138
Alignment explanation
Indices: 3475641--3475930 Score: 352
Period size: 141 Copynumber: 2.1 Consensus size: 138
3475631 TCCTGACTCG
* * * *
3475641 TGATTTAATCCTAGTCATTTTTAGTTTTAGACTCGTGATTTAATTTCGGTTATTTTTTTTTTGAC
1 TGATTTAATCCTAATCATTTTTAGTTTTAGACTCATGATTTAATCTCGGTCATTTTTTTTTTGAC
* * * * *
3475706 TCATGATTTAATTCTGATCGTTTTCGTTTCTTGACTAGTGGTTTAATCCTGATCATTTTTATTTT
66 TCATGATTTAATTATGATCATTTTCATTTCTTGACTAGTGGTTTAATCCTGATCATTTTCACTTT
3475771 TTGATTCA
131 TTGATTCA
* * * *
3475779 TGATTTGATTCTAATCATTTTTATTTCTTTGACTCATGATTTAATGCT-GGTCATTTTCATTTTT
1 TGATTTAATCCTAATCATTTTTAGTT-TTAGACTCATGATTTAAT-CTCGGTCATTTT--TTTTT
* * *
3475843 TGACTCATTG-TTTAATTATGATCATTTTCATTTTTTGACTTGTGGTTTAATCTTGATCATTTTC
62 TGACTCA-TGATTTAATTATGATCATTTTCATTTCTTGACTAGTGGTTTAATCCTGATCATTTTC
3475907 ACTTTTTGACTT-A
126 ACTTTTTGA-TTCA
*
3475920 TGGTTTAATCC
1 TGATTTAATCC
3475931 CTATTGTTTT
Statistics
Matches: 127, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
138 22 0.17
139 24 0.19
140 1 0.01
141 76 0.60
142 4 0.03
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.54
Consensus pattern (138 bp):
TGATTTAATCCTAATCATTTTTAGTTTTAGACTCATGATTTAATCTCGGTCATTTTTTTTTTGAC
TCATGATTTAATTATGATCATTTTCATTTCTTGACTAGTGGTTTAATCCTGATCATTTTCACTTT
TTGATTCA
Found at i:3476145 original size:35 final size:35
Alignment explanation
Indices: 3475294--3483518 Score: 1055
Period size: 35 Copynumber: 232.3 Consensus size: 35
3475284 TTTTCTAACC
* * *
3475294 CATGGTTTAATCTCGATCATTTTCATTTTTTGGCT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* *
3475329 CATGATTTAAT-TCGAGTCATTTTTATTTTTT-ACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* *
3475363 TATGATTTAATAC--GATC-GTTT-ATTTTTTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * *
3475395 CGTGATTTAATCTCGATCA-TTTCA-TTTCTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
** * * *
3475428 TGTG-TTTAAT-TCTCATCATTTTCATTTTCTAACT
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
* * * *
3475462 CATTGATTTAATTTTGGTCATTTT-ATTCCTCTGACT
1 CA-TGATTTAATCTTGATCATTTTCATT-TTTTGACT
* * *** ** *
3475498 CGTGGTTTAATCCCCATTGTCTTCATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
*
3475533 CAT-AGTTTAATCTTGATCATTTTTCATTTTCTGACT
1 CATGA-TTTAATCTTGATCA-TTTTCATTTTTTGACT
* * * * *
3475569 -AGTGGTTTCATCTT-AGTCATTTTCACTCTCTGACT
1 CA-TGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * ** * **
3475604 CATGGTTTAATCCCTG-TTGTTTTAATTTCCTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * * * *
3475639 CGTGATTTAATCCT-AGTCATTTTTAGTTTTAGACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * *
3475674 CGTGATTTAAT-TTCGGTTATTTT--TTTTTTGACT
1 CATGATTTAATCTT-GATCATTTTCATTTTTTGACT
* * *
3475707 CATGATTTAAT-TCTGATCGTTTTCGTTTCTTGACT
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
* * * *
3475742 -AGTGGTTTAATCCTGATCATTTTTATTTTTTGATT
1 CA-TGATTTAATCTTGATCATTTTCATTTTTTGACT
* * *
3475777 CATGATTTGAT-TCTAATCATTTTTATTTCTTTGACT
1 CATGATTTAATCT-TGATCATTTTCATTT-TTTGACT
*
3475813 CATGATTTAATGC-TGGTCATTTTCATTTTTTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
3475848 CATTG-TTTAAT-TATGATCATTTTCATTTTTTGACT
1 CA-TGATTTAATCT-TGATCATTTTCATTTTTTGACT
** * *
3475883 TGTGGTTTAATCTTGATCATTTTCACTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * ** * *
3475918 TATGGTTTAATCCCT-ATTGTTTTACATTTTCTAACT
1 CATGATTTAAT-CTTGATCATTTT-CATTTTTTGACT
* * * *
3475954 CATGCTTTAATCCCTG-TCGTTTTCATTTTTCGA-T
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * * * *
3475988 GCATTATTTAATCCCTGGTCATTTTTATTTTTTGAGT
1 -CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * *
3476025 CATGATTTTATCCTGGTCATTTTCATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * *
3476060 CATGGTATAGTCTTGGTCGTTTTTCATTTTTTGACT
1 CATGATTTAATCTTGATC-ATTTTCATTTTTTGACT
** * ** *
3476096 TGTCATTTCCTCTTGATCACTTTCATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * ** *
3476131 CGTGGTTTAATCTTGGTGGTTTTCATTTTCTCG-CT
1 CATGATTTAATCTTGATCATTTTCATTTT-TTGACT
* * * * * * *
3476166 TAGGGTTTATTCCT-AGTCGTTTTCATTTTCTGACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * * * * *
3476201 CGTGCTTTAAT-TCGAATCGTTGTCATTTTTTAACT
1 CATGATTTAATCTTG-ATCATTTTCATTTTTTGACT
* * ** * *
3476236 CA-CATTTTGATCTTGGCCAATTTCATTTTTTGGCT
1 CATGA-TTTAATCTTGATCATTTTCATTTTTTGACT
* * * * * *
3476271 CATAATTTCATTTTGATAATTTTCATTATCGTTTTCATTT
1 CATGATTTAATCTTGATCATTTTCA-T-T--TTTTGA-CT
** * ** * * *
3476311 TTTGACTCGTGGTTTAATTTCAATCATTTTCATTTTCTAACT
1 CATGA----T--TTAATCTT-GATCATTTTCATTTTTTGACT
* * * * *
3476353 CGTGATTTAAT-TTCAATCATTTTTATTTCTCT-AGGT
1 CATGATTTAATCTT-GATCATTTTCATTT-TTTGA-CT
** * * *
3476389 TGTGATTTAATAC-CGATCATTTTAATTTTCTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * * * *
3476424 CGTGATTTAATCTT-AGTCGTTTTCATTTTCTAACC
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * * *
3476459 CATGGTTTAATCCCT-ATCATTTTCATTTTCTGACC
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * * * *
3476494 CATGGTTTCATCTTGGTCGTTTTCATTTTCT-AGCT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGA-CT
* * * *
3476529 CATGATTTAATCTGGGTCA-TTTCATTTTCTGGC-
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * *
3476562 CTGTGATTTAATC-AGAGTCATTTTTATTTTCTGACT
1 C-ATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
** * * * * *
3476598 TGTGGTTTAATCCTGGTCGTTTTTATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* *
3476633 CATGATTTAATCCTT-ATC-CTTTCTGTTTTTTGACAT
1 CATGATTTAAT-CTTGATCATTTTC-ATTTTTTGAC-T
* * ***
3476669 -GTGGTTTAATCTTGATCATTTTTGCTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
** * **
3476703 TGTGTTTTAATC---CCCA-----ATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* ** * * *
3476730 CATGACTTAATCCCGATCAATTTCATTTTTTAATT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* *
3476765 CAT-AGTATAATCTT-AGTCATTTTTCATTTTCTGACT
1 CATGA-TTTAATCTTGA-TCA-TTTTCATTTTTTGACT
* ** * *
3476801 CATTG-TTTAATGTCAATCACTTCCATTTTTTGACT
1 CA-TGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * ** * *
3476836 TATGGTTTAATCCT-AGTGGTTTTAATTTTCTCG-CT
1 CATGATTTAATCTTGA-TCATTTTCATTTT-TTGACT
* * * * * *
3476871 TAGGGTTTAGT-TCGAGTCATTTTTATTTTTTGACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * * * *
3476906 CGTGCTTTAAT-TTCGGTCGTTTTCATTTTTTAACT
1 CATGATTTAATCTT-GATCATTTTCATTTTTTGACT
*** *
3476941 CATG-TCTTAATCCCAATCATTTTCATTTTCTGACT
1 CATGAT-TTAATCTTGATCATTTTCATTTTTTGACT
* * * *
3476976 CATAATATAAT-TTCAGTAATTTTCATTATCGTTT--C-
1 CATGATTTAATCTTGA-TCATTTTCATT-T--TTTGACT
* * * * *
3477011 CAT-TTTCTGACTCATGATTTAATTTCAATCATTTTTACTTTTCTGGCT
1 CATGATT-T-AATCTTGA--TCATTT---TCA--T----TTTT-TGACT
** * ** ** * *
3477059 TGTGATTTAATGTCAATTGTTTTCATTTTCTAACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * *
3477094 CATGATTTAATCTTGGTCGTTTTCATTTTCTAACC
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* ** * * *
3477129 CATGGTTTAATCTCAATCGTTTTCATTTTCTGACC
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* ** *
3477164 CATGGTTTAATCCCGATCATTTTCATTTTTTCACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * *
3477199 TATGATTTAATCTAGGTCATTTTTATTTTCTGACGT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGAC-T
* * *
3477235 -GTGGTTTAATCCTTG-TCATTTTTATTTTTTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * * * * *
3477269 CGTGATTTAATTTTGGTCATTTTTATTTCTCTAACT
1 CATGATTTAATCTTGATCATTTTCATTT-TTTGACT
* *** *
3477305 CATGGTTTAATCCCAACCATTTTTCATTTTTTGACT
1 CATGATTTAATCTTGATCA-TTTTCATTTTTTGACT
* * * * * * *
3477341 -AGTGGTTTCATCTCGGTCATTTT-ATTCTCTAACT
1 CA-TGATTTAATCTTGATCATTTTCATTTTTTGACT
* *
3477375 CAT-AGTTTAATCCCTG-TCATTTTTATTTTTTGACT
1 CATGA-TTTAAT-CTTGATCATTTTCATTTTTTGACT
* * *** *
3477410 CGT-AGTTTCATCCCAATCATTTTC-TATTTTAGACT
1 CATGA-TTTAATCTTGATCATTTTCAT-TTTTTGACT
* * * *
3477445 CATGATTTAAT-TTCGTTCATTTTTATTTTCTAACT
1 CATGATTTAATCTT-GATCATTTTCATTTTTTGACT
* * ** * *
3477480 CGTGATTTAATTCTAG-TCATTTTTGTTTCTTGAGT
1 CATGATTTAA-TCTTGATCATTTTCATTTTTTGACT
* * * * *
3477515 -AGTGGTTTAATCCTGGTCATTTTCATTTTCTAACT
1 CA-TGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * *
3477550 CATGATTTGATTTTGGTCATTTTTA-TTTCTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * *
3477584 TATGATTTAATGC-CGATCATTTTCATTTTTTGAGT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * *
3477619 CATCATTTAAT-TCTGAACATTTTCATTTTTGGACT
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
** * * * *
3477654 TGTGGTTTACT-TTGGTCA-TTTCAGTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
** ** *** ** *
3477687 TGTGGCTTAATCCCCATTGTTTTACATTTTCTGACT
1 CATGATTTAATCTTGATCATTTT-CATTTTTTGACT
* *
3477723 CATG-TTTAATCCCT-ATCATTTTTATTTTTTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * *
3477757 CATGCTTTAATCCTGGTCATTTTCATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * ***
3477792 CGT-AGTATAATCCCAATCATTTTTCATTTTTTGACTT
1 CATGA-TTTAATCTTGATCA-TTTTCATTTTTTGAC-T
** *** *
3477829 GTTG-TTTAATCCAAATCGCTTTT-ATTTTTTGACT
1 CATGATTTAATCTTGATC-ATTTTCATTTTTTGACT
** * * ** * * *
3477863 TGTGGTTTAATCTTGGTGGTTTTTATTTTCTCACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * * *
3477898 TAGGGTTT-ATCCT-AGCTGTTTTC-TTTTTGTGACT
1 CATGATTTAATCTTGATC-ATTTTCATTTTT-TGACT
* * * * *
3477932 CCTGCTTTAAT-TCTGGTCGTTTTCATTTTTTAACT
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
** * * * *
3477967 C--GCATTTTTTCTCGATAATTTTTATTTTCTGACT
1 CATG-ATTTAATCTTGATCATTTTCATTTTTTGACT
* * * *
3478001 CATAATTTAAT-TTCGGTAATTTTCATTATTGTT--TT
1 CATGATTTAATCTT-GATCATTTTCATT-TT-TTGACT
* * *
3478036 CAT-TTTCTAACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACT
1 CATGATT-TAA-TC-----TTGA--TC-AT--TTTC-ATTTTTTGACT
** * * *
3478083 TGTGATTTAAT-TTCGATCATTTTTATTTCTCTGGCT
1 CATGATTTAATCTT-GATCATTTTCATTT-TTTGACT
** * * *
3478119 TGTGATTTAATACCT-ATCGTTTTCATTTTCTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
** * * * *
3478154 TGTGATTTAATCTCTG-TCAATTTCATTTTCTAACC
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
* * *
3478189 CATGGTTTAAT-TTCGATCATTTTCATTTTCTGACC
1 CATGATTTAATCTT-GATCATTTTCATTTTTTGACT
* * * * *
3478224 CCTGGTTTAATCTTGGTCGTTTTCATTTTTTGGCT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * *
3478259 CATAATTTAATCTAGGTCA-TTTCATTTTTTTG-CC
1 CATGATTTAATCTTGATCATTTTCA-TTTTTTGACT
** * * * *
3478293 CATGATTTAATCCAGGTCATTTTTATTTTCTAACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * * *
3478328 CGTGGTTTAATCCT-AGTTATTTTTACTTTTTGACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * * * *
3478363 TATGGTTTAATCCCT-AT-TTTTTACATTTTTTGATT
1 CATGATTTAAT-CTTGATCATTTT-CATTTTTTGACT
* * ** *
3478398 CATGTTTTAATCCCTG-TCATTTTCATTTTTCAATGT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGA-CT
** *
3478434 GTTG-TTTAATCCTTG-TCATTTTTATTTTTTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * *
3478468 CATGATTTAATCCT-AGTCATTTTGATTTTTTGATTT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGA-CT
* * * * * *
3478504 CTTG-TATAATCCT-AGCCGTTTTTCATTTTCTGACT
1 CATGATTTAATCTTGA-TC-ATTTTCATTTTTTGACT
** *
3478539 CATCG-TTTAATCTTGATCGCTTTCATTTTCTGACT
1 CAT-GATTTAATCTTGATCATTTTCATTTTTTGACT
** * * ** *
3478574 TGTGGTTTAATCCT-AGTGGTTTTCATTTTCTCG-CT
1 CATGATTTAATCTTGA-TCATTTTCATTTT-TTGACT
* * * *
3478609 CAGTG-TTTAGTCCT-AGTCATTTTCATTTTCTAACT
1 CA-TGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * * *
3478644 CATAATTTAATTTTGATAATTTTTATTATCATTT---T
1 CATGATTTAATCTTGATCATTTTCATT-T--TTTGACT
** * * *
3478679 CATTTTTTGACTCGTGGTTTAATCTCGATCGTTTTCA-TTTTTGAACT
1 CATGATTT-AATC-----TTGA--TC-AT--TTTC-ATTTTTTG-ACT
* *
3478726 CGTGATTTAAT-TTGGATCATTTTTATTTCTTTGACT
1 CATGATTTAATCTT-GATCATTTTCATTT-TTTGACT
** * * * *
3478762 TGTGATTTAATATCGAT-ATTTTCATTTTCTAACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * * *
3478796 CATGATTTAACCTCGATCGTTTTCATTTTCTAACC
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* *
3478831 CAT-AGTTTAATCCT-AGTCATTTT-AGGTTTTTGAC-
1 CATGA-TTTAATCTTGA-TCATTTTCA-TTTTTTGACT
* * * **
3478865 CTATGGTTTAATCCTGGTCATTTTCATTTTTTGGTT
1 C-ATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * ** *
3478901 CATGATTCAAT-TCGAGTTGTTTTTA-TTTTTGACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * ** *
3478935 CGTGGTTTAATCCCGATCATTTTTATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * *
3478970 CGTGATTTAATTTTGATCATTTTCATATTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
** * ** * * * *
3479005 TGTGGTTTAAT-TTCCTTCGTTTCCATTTTCTAACT
1 CATGATTTAATCTT-GATCATTTTCATTTTTTGACT
** * * * * *
3479040 TGTGACTTAATTTTGGTCATTTTTATTCCTCTT-ACT
1 CATGATTTAATCTTGATCATTTTCATT--TTTTGACT
* * ** *
3479076 CGT-AGTTTAATCCCT-ATTGTCTTCATTTTTTGACT
1 CATGA-TTTAAT-CTTGATCATTTTCATTTTTTGACT
* * *
3479111 CATGGTTTAATCTTGATCATTTTTCATTTTCTAACT
1 CATGATTTAATCTTGATCA-TTTTCATTTTTTGACT
** * * ** * *
3479147 GGTGGTTTCATCTCAATCATTTTCATTTTCTAACTT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGAC-T
** * ** **
3479183 GTTG-TTTAATCCCTG-TTGTTTTCATTTCCTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * ** * * *
3479217 CGTGGTTTAATAC-CAATCATTTTTAGTTTTAGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
** * * *
3479252 TGTAATTTAATTTTGGTCAATTTT-ATTTTTTGACT
1 CATGATTTAATCTTGATC-ATTTTCATTTTTTGACT
** * ** ** *
3479287 TGTGATTTAATTTTGATTGTTTTTGTTTCTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
** * * *
3479322 -AGTGGCTTAATCTTGGTCAGTTTT-ATTTTCTGATT
1 CA-TGATTTAATCTTGATCA-TTTTCATTTTTTGACT
** * ** *
3479357 TGTGATTTGAT-TCCAATCATTTTTATTTCTTTGACT
1 CATGATTTAATCT-TGATCATTTTCATTT-TTTGACT
* * *
3479393 CATGATTTACTGTTGGTCATTTTCATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
** *
3479428 CATCG-TTTAAT-TCCAATCATTTTCATTTTCTGACT
1 CAT-GATTTAATCT-TGATCATTTTCATTTTTTGACT
* * * *
3479463 CGTGGTTTAATCTCGATCATTTTCACTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * ** * *
3479498 TATGGTTTAATCCCTG-TTGTTTTACATTTTCTAACT
1 CATGATTTAAT-CTTGATCATTTT-CATTTTTTGACT
* * * * ** *
3479534 CATGCTTTAATCCCT-ATCGTTTTCA-TATTCCAAT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * *
3479568 GCATTG-TTTAATCCCT-ATCATTTTTATTTATTGACT
1 -CA-TGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * * *
3479604 CGTGATTTAATCCTGGTCGTTTTCATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * ** **
3479639 CGTGGTATAGTCCCGATTGTTTTTCATTTTTTGACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
** * ** *
3479675 TGTCATTTCCT-TCTAATTGC-TTTT-ATTTTTTGACT
1 CATGATTTAATCT-TGA-T-CATTTTCATTTTTTGACT
* * * ** *
3479710 CGTGCTTTAATCTTGGTGGTTTTCATTTTCTCG-CT
1 CATGATTTAATCTTGATCATTTTCATTTT-TTGACT
* * * * * * *
3479745 TAGGGTTTATTCCT-AGTCGTTTTCATTTTCTGACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * ** *
3479780 CTTGCTTTAAT-TCCAATCATTTTCATTTTTTAACT
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
* * ** *
3479815 CA-CATTTTGATCTTGGCCAATTTCATTTTTTGACT
1 CATGA-TTTAATCTTGATCATTTTCATTTTTTGACT
* * *
3479850 CATAATTTAAT-TCTAATAATTTTCATTATCGTTT---T
1 CATGATTTAATCT-TGATCATTTTCATT-T--TTTGACT
** * *
3479885 CATTTTTTGACTCGTGGTTTAATCTCAATCATTTTCATTTTTTGACT
1 CATGATTT-AATC-----TTGA--TC-AT--TTT-CATTTTTTGACT
* * * *
3479932 CGTGATTTAATTTTGATCATTTTTATTTCTCT-AGCT
1 CATGATTTAATCTTGATCATTTTCATTT-TTTGA-CT
** *
3479968 TGTGATTTAATACCT-ATCATTTTCATTTTTTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* ** * * * *
3480003 CGTGATTTAATCTCAATCGTTTTCATTTTCTAACC
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * *
3480038 CATGGTTTAATCTCTG-TCATTTTCATTTTCTGACC
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
* * ** * * *
3480073 CATGGTTTAATCTTGGTTGTTTTCATTTTCTGGCC
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* ** * * *
3480108 CATGATGTAATCCGGGTCATTTTCATTTTCTGGC-
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* ** * * * *
3480142 CTGTGATTTAATCTCAATCGTTTTCATTTTCTAACC
1 C-ATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * *
3480178 CATGGTTTAATCTCTG-TCATTTTCATTTTCTGACC
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
* * ** * *
3480213 CATGGTTTAATCTTGGTTGTTTTCATTTTTTGGCC
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* ** * * *
3480248 CATGATGTAATCCGGGTCA-TTTCATTTTCTGGCT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
** * * *
3480282 TGTGATTTAATC-AGAGTTATTTTTATTTTTTGACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
** * * * * * *
3480317 TGTGGTTTAATCTTGGTCGTTTTTATTTTCTAACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * ** *
3480352 CATGATTTAATCTCGGTCGCTTTCATTTTTTGACA
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* *
3480387 CATGGTTTAATCTTGATCATTTTCACTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * *** ** *
3480422 TATGGTTTAATCCCCATTGTTTTACATTTTCTGACT
1 CATGATTTAATCTTGATCATTTT-CATTTTTTGACT
* * * * *
3480458 CGTGCTTTAATCCCTG-TCATTTTCA-TTTTTCAAT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * *
3480492 -ATGTTGTTTAATCCCTG-TCATTTTTATTTTTTGACT
1 CATG--ATTTAAT-CTTGATCATTTTCATTTTTTGACT
* *
3480528 CATGATTTAATC-TCAGTCATTTTCATTTTTTGATT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * * * *
3480563 CGTGGTATAATCCT-AGTCATTTTTCATTTTCTGACT
1 CATGATTTAATCTTGA-TCA-TTTTCATTTTTTGACT
* * * ** *
3480599 CACCG-TTTAATGTCGATCGCTTTCATTTTCTGACT
1 CA-TGATTTAATCTTGATCATTTTCATTTTTTGACT
** * * * *
3480634 TGTGGTTTAATCCT-A-CTAGTTTTCATTTTCTCG-TT
1 CATGATTTAATCTTGATC-A-TTTTCATTTT-TTGACT
* * * * **
3480669 TAGGGTTT-AGCCCGAATCATTTTCATTTTTTGACT
1 CATGATTTAATCTTG-ATCATTTTCATTTTTTGACT
* ** * *
3480704 CATGCTTTAAT-TCCAGTC-GTTTCATTTTTTAACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
** *
3480738 CACT--TCTTAATCCCGATCATTTTCATTTTCTGACT
1 CA-TGAT-TTAATCTTGATCATTTTCATTTTTTGACT
* * * * *
3480773 CATAATATAAT-TTCAATCATTTTCATTATTGTTTTCATTTT
1 CATGATTTAATCTT-GATCATTTTC---ATT-TTTTGA--CT
** * *
3480814 C-TGACTTGTGGT-TTAATCTCAATTATT-TTCATTTTCTGACT
1 CATGA-TT-TAATCTTGA--TC-ATT-TTCAT--TTTT-TGACT
* * * *
3480855 AATGATTTAAT-TTCAATCATTTTTACTTTTCT-AGCT
1 CATGATTTAATCTT-GATCATTTTCA-TTTTTTGA-CT
* * * *
3480891 TATGATTTAATGC-TGATCGTTTTCATTTTCTAACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * * *
3480926 CATGATTTAATCTTGGTCGTTTTCATTTTCTAAC-
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * *
3480960 CAATGGTTCAATCTCGGTCATTTTCATTTTTTGACC
1 C-ATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * *
3480996 CATGGTTTAATCCTAATCATTTTCATTTTCTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
** * * * * *
3481031 TGTGATTTAATCTAGGTCATTTTTATTTTCTGACA
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * *
3481066 CATGGTTTAATCCTGGTCGTTTTCATTTTCTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * *
3481101 CATGATTTAAT-TATGGTCATTTTTATTTCTCTAACT
1 CATGATTTAATCT-TGATCATTTTCATTT-TTTGACT
* * ** * *
3481137 CATGGTTTAATCCTCG-TTGTCTTCATTTTCTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* **
3481172 CATGGTTTAATCCCGATCATTTTTCATTTTTTGACT
1 CATGATTTAATCTTGATCA-TTTTCATTTTTTGACT
* * * * * * *
3481208 -AGTGGTTTCATCTTGGTTATTTT-ATTCTCTAACT
1 CA-TGATTTAATCTTGATCATTTTCATTTTTTGACT
* *
3481242 CAT-AGTTTAATCCCT-ATCATTTTAATTTTTTGACT
1 CATGA-TTTAAT-CTTGATCATTTTCATTTTTTGACT
* * ** * *
3481277 CGTGGTTTAATC-CCATCATTTTCAGTTTTAGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * *
3481311 CGTGATTTAATTTTGTTCATTTTTC-TTTTCTAACT
1 CATGATTTAATCTTGATCA-TTTTCATTTTTTGACT
* * * * * *
3481346 CGTGATTTAATTCTAG-TCGTTTTCATTTCTTAAAT
1 CATGATTTAA-TCTTGATCATTTTCATTTTTTGACT
* ** * *
3481381 -AGTGGTTTAATC-CCAGTCATTTTCATTTTGTAACT
1 CA-TGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * *
3481416 CATGATTTGATTCTAG-TCATTTTTA-TTTTTGACT
1 CATGATTT-AATCTTGATCATTTTCATTTTTTGACT
* * *
3481450 TATGATTTAATGCCTG-TCATTTTCATTTTTTGAGT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* *
3481485 CATCATTTAAT-TCTGAACATTTTCATTTTTTGACT
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
* * ** * *
3481520 CGTGGTTTAATCTCCATCATTTTCAGTTTTTAACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
** ** *** ** *
3481555 TGTGGCTTAATCCCCATTGTTTTACATTTTCTGACT
1 CATGATTTAATCTTGATCATTTT-CATTTTTTGACT
* * *
3481591 CATG-TTGAATCCCT-ATCATTTTCATTTTTCGA-T
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * *
3481624 GCCTTG-TTTAATCCCT-ATCATTTTTATTTTTTGACT
1 --CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * **
3481660 CGTGCTTTAATCCCGATCATTTTCATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * * *
3481695 CGT-AGTATAATCCTGGTCGTTTTTCATTTTCTGACTT
1 CATGA-TTTAATCTTGATC-ATTTTCATTTTTTGAC-T
** * * **
3481732 GTTG-TTTAATCCTAATCGCTTTCATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * ** * * *
3481766 CGTGGTTTAATCTTGGTGGTTTTTATTTTCTCACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * *
3481801 TAGGGTTT-ATCCT-AGCCA-TTT--TTTTTTGACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
** * * * * *
3481832 CGCGCTTTAATTCTAG-TCGTTTTAATTTTTT-A-A
1 CATGATTTAA-TCTTGATCATTTTCATTTTTTGACT
* ** * * * *
3481865 CACGCATTTTTTCTCGATAATTTTTATTTTCTGACT
1 CATG-ATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * * * *
3481901 CGTAATTTAATTTTGGTAATGTTCATTATTGTTTTCATTTTCT
1 CATGATTTAATCTTGATCAT-TT--TCATT-TTTTGA----CT
* ** *
3481944 AACTCTTGGTTTAATCTTGATCGTTTTCATTTTTTGACT
1 --C-ATGA-TTTAATCTTGATCATTTTCATTTTTTGACT
* * *
3481983 CGTGATTTAATCCT-AGTCATTTTCATTTTTTGATT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * * * *
3482018 TATTG-TATAATCCT-AGTCGTTTTTCATTTTCTGACT
1 CA-TGATTTAATCTTGA-TC-ATTTTCATTTTTTGACT
* * **
3482054 CATCATTCAATCTTGATCGCTTTCATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
** * * ** * *
3482089 TGTGGTTTAATCCT-AGTGGTTTTCATTTTCTCACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * * *
3482124 CAGTG-TTTAGTCCT-AGTCATTTTCATTTTCTAACT
1 CA-TGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * *
3482159 CAT-ACTTTAAT-TCTGGTAATTTTCATTTTTTAACT
1 CATGA-TTTAATCT-TGATCATTTTCATTTTTTGACT
* * ** *
3482194 CGTGTTTTAATCCCGATCATTTTCATTTTCTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * *
3482229 --TGCAATTTAATTTTGATAATTTTTATTATCATTTTCATTT
1 CATG--ATTTAATCTTGATCATTTTCA-T-T--TTTTGA-CT
** ** * * *
3482269 TTTGACTTGTGGT-TTAATCTCGATCGTT-TTCATTTTTGAACT
1 CATGA-TT-TAATCTTGA--TC-AT-TTTCAT--TTTTTG-ACT
** * * *
3482311 TGTGATTTAAT-TTCGATCATTTTTATTTCTCTGGCT
1 CATGATTTAATCTT-GATCATTTTCATTT-TTTGACT
** * * *
3482347 TGTGATTTAATAC-CGAT-ATTTTCATTTTCTAACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * * * * *
3482381 CATGATTTAATCTCGGTCGTTTTCATTTTCTAACC
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * * *
3482416 CACGGTTTAATC-TCAGTTATTTT-AGTTTTTTTAC-
1 CATGATTTAATCTTGA-TCATTTTCA-TTTTTTGACT
* *
3482450 CTATGGTTTAATCCTT-ATCATTTTCATTTTTTTGGCT
1 C-ATGATTTAAT-CTTGATCATTTTCA-TTTTTTGACT
* * ** *
3482487 CATGATTCAAT-TCGAATTGTTTTTATTTTTTGACT
1 CATGATTTAATCTTG-ATCATTTTCATTTTTTGACT
* * * * *
3482522 TATGCTTTAATCCTGATCATTTTTATTTTTTGAGT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * *
3482557 CGTGATTTAATTTCTG-TCGTTTTCATATTTTGACT
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
** * ** * * *
3482592 TGTGGTTTAAT-TCCCATCGTTTTCATTTTCTAACT
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
* * * * * * *
3482627 CCTAATTTAATTTTGGTCATTTTTATTCCTCTGACT
1 CATGATTTAATCTTGATCATTTTCATT-TTTTGACT
* * ** *
3482663 CGT-AGTTTAATCCCT-ATTGTCTTCATTTTTTGACT
1 CATGA-TTTAAT-CTTGATCATTTTCATTTTTTGACT
* * * *
3482698 CATGGTTTAATCTTGATCTTTTTTCATTTTCTAACT
1 CATGATTTAATCTTGATC-ATTTTCATTTTTTGACT
** * * * * *
3482734 GGTGGTTTCATCTCGGTCATTTTCATTTTCT-AGCT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGA-CT
* * * ** **
3482769 TATGGTTTAATCCCTG-TTGTTTTCATTTCCTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * * ** * **
3482804 CGTGGTTTAGTAC-CAATCATTTTCAATTTTAAACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
** * * * * *
3482839 TGTAATTTAATTTTGGTCATTTTTATTTTCTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * *
3482874 CGA-GATTTAAT-TCTGGTCATTTTCGTTTCTTGACT
1 C-ATGATTTAATCT-TGATCATTTTCATTTTTTGACT
* * *
3482909 -AGTGGTTTAATCTTGGTCATTTTCATTTTCTGACT
1 CA-TGATTTAATCTTGATCATTTTCATTTTTTGACT
** * * * *
3482944 TGTGATTTGAT-TTCAGTCATTTTTATTTCCTTGACT
1 CATGATTTAATCTTGA-TCATTTTCATTT-TTTGACT
** *
3482980 TGTTATTTAATGC-TGATCATTTTCATTTTTTGACT
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* * * *
3483015 CGTCATTTAAT-TCTGATCATTTTCATTTTCTAACT
1 CATGATTTAATCT-TGATCATTTTCATTTTTTGACT
* * *
3483050 CATGGTTTAATC-TCAGTCATTTTCACTTTTTGACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
** * * **
3483085 TGTGGTTTAATCCCT-ATTGTTTTACATTTTCTTGACT
1 CATGATTTAAT-CTTGATCATTTT-CATTTT-TTGACT
*
3483122 CATGATTTAATCCCTG-TCATTTTCATTTTTTGA-T
1 CATGATTTAAT-CTTGATCATTTTCATTTTTTGACT
* *
3483156 -ATGTTATTTAATCCCT-ATCATTTTTATTTTTTGACT
1 CATG--ATTTAAT-CTTGATCATTTTCATTTTTTGACT
* ** **
3483192 CGTGATTTAATC-CCAGTTGTTTTCATTTTTTGACT
1 CATGATTTAATCTTGA-TCATTTTCATTTTTTGACT
* * * * * *
3483227 CATGGTATAATCCT-AGTCGTTTTTCATTTTATAACT
1 CATGATTTAATCTTGA-TC-ATTTTCATTTTTTGACT
* * ***
3483263 CATCG-TTTAATCCTAATTGCTTTCATTTTTTGACT
1 CAT-GATTTAATCTTGATCATTTTCATTTTTTGACT
* * ** * * *
3483298 CATGGTTTAATCTTGGTGGTTTTCATTTTCTCATT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * *** * *
3483333 CAGGGTTTAGTCCCAATCATTTTCATTTTCTAACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
** * * * *
3483368 TGTGATTTAGT-TTGGTTCGTTTTCATTTTCTGACT
1 CATGATTTAATCTT-GATCATTTTCATTTTTTGACT
** * * * *
3483403 TGTGATTTAGT-TCGAGTCGTCTTT-ATTTTTTGACA
1 CATGATTTAATCTTGA-TCAT-TTTCATTTTTTGACT
* * ** *
3483438 CATGGTTTAATCTTGGTTGTTTTTATTTTTTGACT
1 CATGATTTAATCTTGATCATTTTCATTTTTTGACT
* * * *
3483473 CGTGATTTAAT-TTCAATCATTTTAATTTTCTGACT
1 CATGATTTAATCTT-GATCATTTTCATTTTTTGACT
*
3483508 CATGGTTTAAT
1 CATGATTTAAT
3483519 TACCATCATT
Statistics
Matches: 5993, Mismatches: 1625, Indels: 1144
0.68 0.19 0.13
Matches are distributed among these distances:
27 17 0.00
30 2 0.00
31 21 0.00
32 29 0.00
33 111 0.02
34 568 0.09
35 3844 0.64
36 1013 0.17
37 88 0.01
38 36 0.01
39 29 0.00
40 20 0.00
41 33 0.01
42 33 0.01
43 26 0.00
44 23 0.00
45 14 0.00
46 30 0.01
47 50 0.01
48 4 0.00
49 2 0.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (35 bp):
CATGATTTAATCTTGATCATTTTCATTTTTTGACT
Found at i:3477430 original size:141 final size:139
Alignment explanation
Indices: 3477133--3477439 Score: 341
Period size: 141 Copynumber: 2.2 Consensus size: 139
3477123 CTAACCCATG
* * * * *
3477133 GTTTAATCTCAATCGTTTTCATTTTCTGACCCATGGTTTAATCCCGATCATTTTCATTTTTTCAC
1 GTTTAATCTCAATCATTTTTATTTTCTAACCCATGGTTTAATCCCAACCATTTTCATTTTTTCAC
* * * * *
3477198 TTATGATTTAATCTAGGTCATTTTTATTTTCTGACGTGTGGTTTAATCCTTGTCATTTTTATTTT
66 TTATGATTTAATCTAGGTCATTTTTATTCTCTAACGTATAGTTTAATCCCTGTCATTTTTATTTT
3477263 TTGACTCGT
131 TTGACTCGT
* *** *
3477272 GATTTAATTTTGGTCATTTTTATTTCTCTAACTCATGGTTTAATCCCAACCATTTTTCATTTTTT
1 G-TTTAATCTCAATCATTTTTATTT-TCTAACCCATGGTTTAATCCCAACCA-TTTTCATTTTTT
* * * *
3477337 GAC-TAGTGGTTTCATCTCGGTCA-TTTTATTCTCTAAC-TCATAGTTTAATCCCTGTCATTTTT
63 CACTTA-TGATTTAATCTAGGTCATTTTTATTCTCTAACGT-ATAGTTTAATCCCTGTCATTTTT
3477399 ATTTTTTGACTCGT
126 ATTTTTTGACTCGT
* *
3477413 AGTTTCATCCCAATCATTTTCTATTTT
1 -GTTTAATCTCAATCATTTT-TATTTT
3477440 AGACTCATGA
Statistics
Matches: 136, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
139 1 0.01
140 18 0.13
141 83 0.61
142 34 0.25
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.51
Consensus pattern (139 bp):
GTTTAATCTCAATCATTTTTATTTTCTAACCCATGGTTTAATCCCAACCATTTTCATTTTTTCAC
TTATGATTTAATCTAGGTCATTTTTATTCTCTAACGTATAGTTTAATCCCTGTCATTTTTATTTT
TTGACTCGT
Found at i:3478163 original size:106 final size:105
Alignment explanation
Indices: 3478031--3478220 Score: 238
Period size: 106 Copynumber: 1.8 Consensus size: 105
3478021 TTTCATTATT
* ** * * ***
3478031 GTTTTCATTTTCTAACTCATGGTTTAATCTC-GATCGTTTTCATTTTTTGACTTGTGATTTAATT
1 GTTTTCATTTTCTAACTCATGATTTAATCTCTG-TCAATTTCATTTTCTAACCCATGATTTAATT
*
3478095 TCGATCATTTTTATTTCTCTGGCTTGTGATTTAATACCTATC
65 TCGATCATTTTCATTT-TCTGGCTTGTGATTTAATACCTATC
* ** *
3478137 GTTTTCATTTTCTGACTTGTGATTTAATCTCTGTCAATTTCATTTTCTAACCCATGGTTTAATTT
1 GTTTTCATTTTCTAACTCATGATTTAATCTCTGTCAATTTCATTTTCTAACCCATGATTTAATTT
3478202 CGATCATTTTCATTTTCTG
66 CGATCATTTTCATTTTCTG
3478221 ACCCCTGGTT
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
105 4 0.06
106 65 0.93
107 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.53
Consensus pattern (105 bp):
GTTTTCATTTTCTAACTCATGATTTAATCTCTGTCAATTTCATTTTCTAACCCATGATTTAATTT
CGATCATTTTCATTTTCTGGCTTGTGATTTAATACCTATC
Found at i:3478287 original size:34 final size:34
Alignment explanation
Indices: 3478229--3478314 Score: 109
Period size: 34 Copynumber: 2.5 Consensus size: 34
3478219 TGACCCCTGG
* * *
3478229 TTTAATCTTGGTCGTTTTCATTTTTTGGCTCATAA
1 TTTAATCTAGGTC-ATTTCATTTTTTGGCCCATAA
* *
3478264 TTTAATCTAGGTCATTTCATTTTTTTGCCCATGA
1 TTTAATCTAGGTCATTTCATTTTTTGGCCCATAA
*
3478298 TTTAATCCAGGTCATTT
1 TTTAATCTAGGTCATTT
3478315 TTATTTTCTA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
34 33 0.73
35 12 0.27
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (34 bp):
TTTAATCTAGGTCATTTCATTTTTTGGCCCATAA
Found at i:3479526 original size:106 final size:105
Alignment explanation
Indices: 3478675--3479810 Score: 322
Period size: 106 Copynumber: 10.8 Consensus size: 105
3478665 TTTATTATCA
* * * * *
3478675 TTTTCATTTTTTGACTCGTGGTTTAA-TCTCGATCGTTTTCATTTT-TGAACTCGTGATTTAATT
1 TTTTCATTTTTTGACTCATGGTTTAATTC-CAATCATTTTCATTTTCTG-ACTTGTGATTTAATC
** * * * ** * *
3478738 TGGATCATTTTTATTTCTTTGACTTGTGATTTAATATC-GATA
64 TCAATCATTTTCATTT-TTTGACTTATGGTTTAATCCCTGTTG
* * * * * * * ***
3478780 TTTTCATTTTCTAACTCATGATTTAA-CCTCGATCGTTTTCATTTTCTAACCCAT-AGTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATTC-CAATCATTTTCATTTTCTGACTTGTGA-TTTAATC
* * * **
3478843 -CTAGTCATTTT-AGGTTTTTGACCTATGGTTTAAT-CCTGGTCA
64 TC-AATCATTTTCA-TTTTTTGACTTATGGTTTAATCCCT-GTTG
** * * * * ** * * * *
3478885 TTTTCATTTTTTGGTTCATGATTCAATTCGAGTTGTTTTTATTTT-TGACTCGTGGTTTAATCCC
1 TTTTCATTTTTTGACTCATGGTTTAATTCCAATCATTTTCATTTTCTGACTTGTGATTTAATCTC
* * ** * ** **
3478949 GATCATTTTTATTTTTTGACTCGTGATTTAAT-TTTGATCA
66 AATCATTTTCATTTTTTGACTTATGGTTTAATCCCTG-TTG
* ** * * * * * *
3478989 TTTTCATATTTTGACTTGTGGTTTAATTTCC-TTCGTTTCCATTTTCTAACTTGTGACTTAATTT
1 TTTTCATTTTTTGACTCATGGTTTAA-TTCCAATCATTTTCATTTTCTGACTTGTGATTTAATCT
*** * * ** * *
3479053 TGGTCATTTTTATTCCTCTT-ACTCGTAGTTTAATCCCTATTG
65 CAATCATTTTCATT--TTTTGACTTATGGTTTAATCCCTGTTG
* ** * * * *
3479095 TCTTCATTTTTTGACTCATGGTTTAA-TCTTGATCATTTTTCATTTTCTAACTGGTGGTTTCATC
1 TTTTCATTTTTTGACTCATGGTTTAATTC-CAATCA-TTTTCATTTTCTGACTTGTGATTTAATC
* * * *
3479159 TCAATCATTTTCATTTTCTAACTTGTTGTTTAATCCCTGTTG
64 TCAATCATTTTCATTTTTTGACTTATGGTTTAATCCCTGTTG
** * * * * * *
3479201 TTTTCATTTCCTGACTCGTGGTTTAATACCAATCATTTTTAGTTTT-AGACTTGTAATTTAATTT
1 TTTTCATTTTTTGACTCATGGTTTAATTCCAATCATTTTCA-TTTTCTGACTTGTGATTTAATCT
*** * * **
3479265 TGGTCAATTTT-ATTTTTTGACTTGTGATTTAAT-TTTGATTG
65 CAATC-ATTTTCATTTTTTGACTTATGGTTTAATCCCTG-TTG
** * * *** * *
3479306 TTTTTGTTTCTTGACT-AGTGGCTTAA-TCTTGGTCAGTTTT-ATTTTCTGATTTGTGATTTGAT
1 TTTTCATTTTTTGACTCA-TGGTTTAATTC-CAATCA-TTTTCATTTTCTGACTTGTGATTTAAT
* * * * ** **
3479368 -TCCAATCATTTTTATTTCTTTGACTCATGATTTACT-GTTGGTCA
63 CT-CAATCATTTTCATTT-TTTGACTTATGGTTTAATCCCT-GTTG
* * *
3479412 TTTTCATTTTTTGACTCATCGTTTAATTCCAATCATTTTCATTTTCTGACTCGTGGTTTAATCTC
1 TTTTCATTTTTTGACTCATGGTTTAATTCCAATCATTTTCATTTTCTGACTTGTGATTTAATCTC
* *
3479477 GATCATTTTCACTTTTTGACTTATGGTTTAATCCCTGTTG
66 AATCATTTTCATTTTTTGACTTATGGTTTAATCCCTGTTG
* * * * * * * *
3479517 TTTTACATTTTCTAACTCATGCTTTAATCCCTATCGTTTTCATATTCCAATG-CAT-TG-TTTAA
1 TTTT-CATTTTTTGACTCATGGTTTAATTCCAATCATTTTCAT-TTTC--TGACTTGTGATTTAA
* * * * ** * *
3479579 TCCCTATCATTTTTATTTATTGACTCGTGATTTAAT-CCTGGTCG
62 TCTCAATCATTTTCATTTTTTGACTTATGGTTTAATCCCT-GTTG
* * * * * ** * * **
3479623 TTTTCATTTTTTGACTCGTGGTATAGTCCCGATTGTTTTTCATTTTTTGACTTGTCATTTCCT-T
1 TTTTCATTTTTTGACTCATGGTTTAATTCC-AATCATTTTCATTTTCTGACTTGTGATTTAATCT
** * * *
3479687 CTAATTGC-TTTT-ATTTTTTGACTCGTGCTTTAAT-CTTGGTGG
65 C-AA-T-CATTTTCATTTTTTGACTTATGGTTTAATCCCT-GTTG
* * * * * *
3479729 TTTTCATTTTCTCG-CTTAGGGTTT-ATTCCTAGTCGTTTTCATTTTCTGACTCT-TGCTTTAAT
1 TTTTCATTTT-TTGACTCATGGTTTAATTCC-AATCATTTTCATTTTCTGACT-TGTGATTTAAT
3479791 -TCCAATCATTTTCATTTTTT
63 CT-CAATCATTTTCATTTTTT
3479811 AACTCACATT
Statistics
Matches: 759, Mismatches: 218, Indels: 108
0.70 0.20 0.10
Matches are distributed among these distances:
103 5 0.01
104 107 0.14
105 292 0.38
106 296 0.39
107 55 0.07
108 2 0.00
109 2 0.00
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (105 bp):
TTTTCATTTTTTGACTCATGGTTTAATTCCAATCATTTTCATTTTCTGACTTGTGATTTAATCTC
AATCATTTTCATTTTTTGACTTATGGTTTAATCCCTGTTG
Found at i:3480836 original size:47 final size:47
Alignment explanation
Indices: 3480757--3480846 Score: 117
Period size: 47 Copynumber: 1.9 Consensus size: 47
3480747 ATCCCGATCA
*
3480757 TTTTCATTTTCTGACTCATAATATAATTTCAATCATTTTCATTATTG
1 TTTTCATTTTCTGACTCATAATATAATCTCAATCATTTTCATTATTG
** ** * *
3480804 TTTTCATTTTCTGACTTGTGGTTTAATCTCAATTATTTTCATT
1 TTTTCATTTTCTGACTCATAATATAATCTCAATCATTTTCATT
3480847 TTCTGACTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 36 1.00
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.56
Consensus pattern (47 bp):
TTTTCATTTTCTGACTCATAATATAATCTCAATCATTTTCATTATTG
Found at i:3481164 original size:176 final size:174
Alignment explanation
Indices: 3480806--3481254 Score: 478
Period size: 176 Copynumber: 2.6 Consensus size: 174
3480796 CATTATTGTT
*** * * *
3480806 TTCATTTTCTGACTTGTGGTTTAAT-CTCAATTATTTTCATTTTCTGACTAATGATTTAATTTCA
1 TTCATTTTCTGACCCATGGTTTAATCCT-AATCATTTTCATTTTCTGACTAGTGATTTAATCT-A
* * * *
3480870 -ATCATTTTTACTTTTCTAGCTTATGATTTAATGCTGATCGTTTTCATTTTCTAACTCATGATTT
64 GGTCATTTTTA-TTTTCTA-CTCATGGTTTAATCCTGATCGTTTTCATTTTCTAACTCATGATTT
* *
3480934 AATCTTGGTCGTTTTCATTTTCTAACCAATGGTTCAATCTCGGTCATT
127 AATCTTGGTCATTTTCATTTTCTAACCAATGGTTCAATCTCGGTCATC
* *
3480982 TTCATTTTTTGACCCATGGTTTAATCCTAATCATTTTCATTTTCTGACTTGTGATTTAATCTAGG
1 TTCATTTTCTGACCCATGGTTTAATCCTAATCATTTTCATTTTCTGACTAGTGATTTAATCTAGG
* * *
3481047 TCATTTTTATTTTCTGACACATGGTTTAATCCTGGTCGTTTTCATTTTCTGACTCATGATTTAAT
66 TCATTTTTATTTTCT-ACTCATGGTTTAATCCTGATCGTTTTCATTTTCTAACTCATGATTTAAT
* * **
3481112 -TATGGTCATTTTTATTTCTCTAACTC-ATGGTTTAATCCTC-GTTGTC
130 CT-TGGTCATTTTCATTT-TCTAAC-CAATGGTTCAAT-CTCGGTCATC
* ** * * * *
3481158 TTCATTTTCTGACTCATGGTTTAATCCCGATCATTTTTCATTTTTTGACTAGTGGTTTCATCTTG
1 TTCATTTTCTGACCCATGGTTTAATCCTAATCA-TTTTCATTTTCTGACTAGTGATTTAATCTAG
* * *
3481223 GTTA-TTTTATTCTCTAACTCATAGTTTAATCC
65 GTCATTTTTATTTTCT-ACTCATGGTTTAATCC
3481255 CTATCATTTT
Statistics
Matches: 230, Mismatches: 35, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
174 1 0.00
175 62 0.27
176 132 0.57
177 35 0.15
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.50
Consensus pattern (174 bp):
TTCATTTTCTGACCCATGGTTTAATCCTAATCATTTTCATTTTCTGACTAGTGATTTAATCTAGG
TCATTTTTATTTTCTACTCATGGTTTAATCCTGATCGTTTTCATTTTCTAACTCATGATTTAATC
TTGGTCATTTTCATTTTCTAACCAATGGTTCAATCTCGGTCATC
Found at i:3482048 original size:106 final size:105
Alignment explanation
Indices: 3481932--3482224 Score: 311
Period size: 106 Copynumber: 2.8 Consensus size: 105
3481922 TTCATTATTG
* **
3481932 TTTTCATTTTCTAACTCTTGGTTTAATCTTGATCGTTTTCATTTTTTGACTCGTGATTTAATCCT
1 TTTTCATTTTCTAACTCATAATTTAATCTTGATCGTTTTCATTTTTTGACTCGTGATTTAATCCT
* * * * * *
3481997 AGTCATTTTCATTTTTTGATTTATTGTATAATCCTAGTCGT
66 AGTCATTTTCATTTTCTCACTCAGTGTATAATCCTAGTC-A
* * * * * *
3482038 TTTTCATTTTCTGACTCATCATTCAATCTTGATCGCTTTCATTTTTTGACTTGTGGTTTAATCCT
1 TTTTCATTTTCTAACTCATAATTTAATCTTGATCGTTTTCATTTTTTGACTCGTGATTTAATCCT
** * *
3482103 AGTGGTTTTCATTTTCTCACTCAGTGTTTAGTCCTAGTCA
66 AGTCATTTTCATTTTCTCACTCAGTGTATAATCCTAGTCA
* * ** * *
3482143 TTTTCATTTTCTAACTCATACTTTAAT-TCTGGTAATTTTCATTTTTTAACTCGTGTTTTAATCC
1 TTTTCATTTTCTAACTCATAATTTAATCT-TGATCGTTTTCATTTTTTGACTCGTGATTTAATCC
*
3482207 -CGATCATTTTCATTTTCT
65 TAG-TCATTTTCATTTTCT
3482225 GACTTGCAAT
Statistics
Matches: 153, Mismatches: 32, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
104 2 0.01
105 64 0.42
106 87 0.57
ACGTcount: A:0.19, C:0.18, G:0.11, T:0.53
Consensus pattern (105 bp):
TTTTCATTTTCTAACTCATAATTTAATCTTGATCGTTTTCATTTTTTGACTCGTGATTTAATCCT
AGTCATTTTCATTTTCTCACTCAGTGTATAATCCTAGTCA
Found at i:3482285 original size:82 final size:82
Alignment explanation
Indices: 3482177--3482337 Score: 225
Period size: 82 Copynumber: 2.0 Consensus size: 82
3482167 AATTCTGGTA
*
3482177 ATTTTCATTTTTTAACTCGTGTTTTAATCCCGATCATTTTCATTTTCTG-ACTTGCAATTTAATT
1 ATTTTCATTTTTTAACTCGTGGTTTAATCCCGATCATTTTCATTTT-TGAACTTGCAATTTAATT
*
3482241 TTGATAATTTTTATTATC
65 TCGATAATTTTTATTATC
* * * * **
3482259 ATTTTCATTTTTTGACTTGTGGTTTAATCTCGATCGTTTTCATTTTTGAACTTGTGATTTAATTT
1 ATTTTCATTTTTTAACTCGTGGTTTAATCCCGATCATTTTCATTTTTGAACTTGCAATTTAATTT
*
3482324 CGATCATTTTTATT
66 CGATAATTTTTATT
3482338 TCTCTGGCTT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
81 2 0.03
82 67 0.97
ACGTcount: A:0.21, C:0.13, G:0.10, T:0.56
Consensus pattern (82 bp):
ATTTTCATTTTTTAACTCGTGGTTTAATCCCGATCATTTTCATTTTTGAACTTGCAATTTAATTT
CGATAATTTTTATTATC
Found at i:3483042 original size:20 final size:20
Alignment explanation
Indices: 3482984--3483042 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 20
3482974 TTGACTTGTT
*
3482984 ATTTAATGCTGATCATTTTC
1 ATTTAATTCTGATCATTTTC
**
3483004 ATTT--TT-TGA-C-TCGTC
1 ATTTAATTCTGATCATTTTC
3483019 ATTTAATTCTGATCATTTTC
1 ATTTAATTCTGATCATTTTC
3483039 ATTT
1 ATTT
3483043 TCTAACTCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 10
0.66 0.11 0.23
Matches are distributed among these distances:
15 7 0.24
16 1 0.03
17 5 0.17
18 4 0.14
19 1 0.03
20 11 0.38
ACGTcount: A:0.22, C:0.15, G:0.08, T:0.54
Consensus pattern (20 bp):
ATTTAATTCTGATCATTTTC
Found at i:3483238 original size:142 final size:142
Alignment explanation
Indices: 3482996--3483256 Score: 321
Period size: 142 Copynumber: 1.8 Consensus size: 142
3482986 TTAATGCTGA
* *
3482996 TCATTTTCATTTTTTGACTCGTCATTTAATTCTGATCATTTTCATTTTCTAACTCATGGTTTAAT
1 TCATTTTCATTTTTTGACTCGTCATTTAATCCTGATCATTTTCATTTTCTAACTCATGATTTAAT
* ** * *
3483061 CTCAGTCATTTTCACTTTTTGACTTGTGGTTTAATCCCTA-TTGTTTTACATTTTCTTGACTCAT
66 CCCAGTCATTTTCACTTTTTGACTCATGGTATAAT-CCTAGTCGTTTTACATTTTCTTGACTCAT
3483125 GATTTAATCCCTG
130 GATTTAATCCCTG
* * * * * *
3483138 TCATTTTCATTTTTTGA-TATGTTATTTAATCCCT-ATCATTTTTATTTTTTGACTCGTGATTTA
1 TCATTTTCATTTTTTGACT-CGTCATTTAAT-CCTGATCATTTTCATTTTCTAACTCATGATTTA
** * *
3483201 ATCCCAGTTGTTTTCATTTTTTGACTCATGGTATAATCCTAGTCGTTTTTCATTTT
64 ATCCCAGTCATTTTCACTTTTTGACTCATGGTATAATCCTAGTCGTTTTACATTTT
3483257 ATAACTCATC
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
141 5 0.05
142 92 0.93
143 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.53
Consensus pattern (142 bp):
TCATTTTCATTTTTTGACTCGTCATTTAATCCTGATCATTTTCATTTTCTAACTCATGATTTAAT
CCCAGTCATTTTCACTTTTTGACTCATGGTATAATCCTAGTCGTTTTACATTTTCTTGACTCATG
ATTTAATCCCTG
Found at i:3483519 original size:35 final size:35
Alignment explanation
Indices: 3483457--3483530 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
3483447 ATCTTGGTTG
* * * *
3483457 TTTTTATTTTTTGACTCGTGATTTAATTTCAATCA
1 TTTTAATTTTCTGACTCATGATTTAATTACAATCA
* *
3483492 TTTTAATTTTCTGACTCATGGTTTAATTACCATCA
1 TTTTAATTTTCTGACTCATGATTTAATTACAATCA
3483527 TTTT
1 TTTT
3483531 CCCGCTGATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.23, C:0.14, G:0.08, T:0.55
Consensus pattern (35 bp):
TTTTAATTTTCTGACTCATGATTTAATTACAATCA
Done.