Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 32 of 93
Found at i:3486921 original size:45 final size:45
Alignment explanation
Indices: 3486829--3486922 Score: 109
Period size: 45 Copynumber: 2.1 Consensus size: 45
3486819 ATGTGCCCAC
** * **
3486829 ACCAAGGGCCAGTGCGTGCCGATGGTGGTCGATGGGACTACTTGT
1 ACCAAGGGCCAACGCGTGCCGATGGTGGTCGATGGAACTACCCGT
* *
3486874 ACCAAGGGCCAACGTGTGCCGATGGTGGTCGA-GGCAACTGCCCGT
1 ACCAAGGGCCAACGCGTGCCGATGGTGGTCGATGG-AACTACCCGT
3486919 ACCA
1 ACCA
3486923 GCTCGAGACA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 2 0.05
45 39 0.95
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (45 bp):
ACCAAGGGCCAACGCGTGCCGATGGTGGTCGATGGAACTACCCGT
Found at i:3487080 original size:45 final size:45
Alignment explanation
Indices: 3487007--3487308 Score: 286
Period size: 45 Copynumber: 6.7 Consensus size: 45
3486997 GAAATATGCT
* * * * * *
3487007 GATGGTGTTCGACGTAACCACCTGCACCAAGGGCCATCTTTTACG
1 GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTTTACC
** ** * * * **
3487052 GATGGTGGTCGAGGCAAGAGCCTACACCAAGGATCGA-CTTGTGTC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAAGG-GCCATCTTTTACC
*
3487097 GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTACC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTTTACC
* *
3487142 GATGGTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCTTATT-CC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTT-TTACC
* * * * * * *
3487187 GATGGTGCTCAAGGCAACTGCTCGCACTAAGGGCCAGC-TTGAGCC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTTTA-CC
* * *
3487232 GATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATTTTTTATC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTTTACC
* *
3487277 GATGGTGGTCAAGGTAACCGCCCGCACCAAGG
1 GATGGTGGTCGAGGCAACCGCCCGCACCAAGG
3487309 CCCAGCACAT
Statistics
Matches: 208, Mismatches: 43, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
43 1 0.00
44 3 0.01
45 198 0.95
46 6 0.03
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (45 bp):
GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTTTACC
Found at i:3487124 original size:90 final size:90
Alignment explanation
Indices: 3487007--3487533 Score: 246
Period size: 90 Copynumber: 5.9 Consensus size: 90
3486997 GAAATATGCT
* * * * * *
3487007 GATGGTGTTCGACGTAACCACCTGCACCAAGGGCCATCTTTTACGGATGGTGGTCGAGGCAAGAG
1 GATGGTGGTCGACGCAACCACCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAG
*
3487072 CCTACACCAAGGATCGACTTGTGTC
66 CCCACACCAAGGATCGACTTGTGTC
* * *
3487097 GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCG
1 GATGGTGGTCGACGCAACCACCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAG
* * *
3487162 CCCACACCAAGG-GCCAGCTTAT-TCC
66 CCCACACCAAGGATCGA-CTTGTGT-C
* * * ** * * * * * *
3487187 GATGGTGCTCAAGGCAACTGCTCGCACTAAGGGCCAGCTT-GAGCCGATGGTGCTCGAGGCAACC
1 GATGGTGGTCGACGCAACCACCCGCACCAAGGGCCATCTTCTA-CCGATGGTGGTCGAGGCAACA
* * * * * *
3487251 GCCCGCACCAAGG-GCCATTTTTTATC
65 GCCCACACCAAGGATCGA-CTTGTGTC
* * * * * * * * * *
3487277 GATGGTGGTCAAGGTAACCGCCCGCACCAAGGCCCAGC-ACATGCCGATAGTGTTCGAGGCAATC
1 GATGGTGGTCGACGCAACCACCCGCACCAAGGGCCATCTTC-TACCGATGGTGGTCGAGGCAA-C
** ** * *
3487341 -GGTCGTACC-AGAGA-CCAGCATGTGTC
64 AGCCCACACCAAG-GATCGA-CTTGTGTC
* * * * * * * *** * *
3487367 GATGGTGTTCGATGTAATCGCCCACACCAGGGGCCATCTTCTGTTGATGGTGGTCGACGCAAGAG
1 GATGGTGGTCGACGCAACCACCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAG
*** *
3487432 CCTGTACCAATGG-TCGACTTATG-C
66 CCCACACCAA-GGATCGACTTGTGTC
* * * * * * * *
3487456 TAATGGTGGTCGAAGCAACTACCCGTACTAAGGGCCATCTTCTACCAATGGTGGTTGAGGCAACC
1 -GATGGTGGTCGACGCAACCACCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACA
**
3487521 GCCCGTACCAAGG
65 GCCCACACCAAGG
3487534 CCCAACACGT
Statistics
Matches: 337, Mismatches: 85, Indels: 31
0.74 0.19 0.07
Matches are distributed among these distances:
89 9 0.03
90 320 0.95
91 7 0.02
92 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (90 bp):
GATGGTGGTCGACGCAACCACCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAG
CCCACACCAAGGATCGACTTGTGTC
Found at i:3487191 original size:135 final size:135
Alignment explanation
Indices: 3487031--3487338 Score: 343
Period size: 135 Copynumber: 2.3 Consensus size: 135
3487021 TAACCACCTG
* * * * **
3487031 CACCAAGGGCCATCTT-TTACGGATGGTGGTCGAGGCAAGAGC-CTACACCAAGGATC-GACTTG
1 CACCAAGGGCCAGCTTATT-CCGATGGTGCTCGAGGCAACAGCTC-ACACCAAGGGCCAG-CTTG
* * * *
3487093 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCA
63 AGCCGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCAAGGCA
3487158 ACCGCCCA
128 ACCGCCCA
* * * *
3487166 CACCAAGGGCCAGCTTATTCCGATGGTGCTCAAGGCAACTGCTCGCACTAAGGGCCAGCTTGAGC
1 CACCAAGGGCCAGCTTATTCCGATGGTGCTCGAGGCAACAGCTCACACCAAGGGCCAGCTTGAGC
* * * *
3487231 CGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATTTTTTATCGATGGTGGTCAAGGTAACC
66 CGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCAAGGCAACC
*
3487296 GCCCG
131 GCCCA
* ** * * *
3487301 CACCAAGGCCCAGCACATGCCGATAGTGTTCGAGGCAA
1 CACCAAGGGCCAGCTTATTCCGATGGTGCTCGAGGCAA
3487339 TCGGTCGTAC
Statistics
Matches: 144, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
135 140 0.97
136 4 0.03
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (135 bp):
CACCAAGGGCCAGCTTATTCCGATGGTGCTCGAGGCAACAGCTCACACCAAGGGCCAGCTTGAGC
CGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCAAGGCAACC
GCCCA
Found at i:3487359 original size:135 final size:135
Alignment explanation
Indices: 3487096--3487421 Score: 359
Period size: 135 Copynumber: 2.4 Consensus size: 135
3487086 CGACTTGTGT
* * *
3487096 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACC
1 CGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTATCGATGGTGGTCAAGGCAACC
* ** * * * * *
3487161 GCCCACACCAAGGGCCAGCTTATTCCGATGGTGCTCAAGGCAACTGCTCGCACTAAGGGCCAGCT
66 GCCCACACCAAGGCCCAGCACATGCCGATAGTGCTCAAGGCAACTGCTCGCACCAAGGACCAGCA
3487226 TGAGC
131 TGAGC
* * *
3487231 CGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATTTTTTATCGATGGTGGTCAAGGTAACC
1 CGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTATCGATGGTGGTCAAGGCAACC
* * * * *
3487296 GCCCGCACCAAGGCCCAGCACATGCCGATAGTGTTCGAGGCAA-TCGGTCGTACC-AGAGACCAG
66 GCCCACACCAAGGCCCAGCACATGCCGATAGTGCTCAAGGCAACT-GCTCGCACCAAG-GACCAG
* *
3487359 CATGTGT
129 CATGAGC
* * * * * * * *
3487366 CGATGGTGTTCGATGTAATCGCCCACACCAGGGGCCATCTTCTGTTGATGGTGGTC
1 CGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTATCGATGGTGGTC
3487422 GACGCAAGAG
Statistics
Matches: 158, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
134 3 0.02
135 155 0.98
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.19
Consensus pattern (135 bp):
CGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATCTTCTATCGATGGTGGTCAAGGCAACC
GCCCACACCAAGGCCCAGCACATGCCGATAGTGCTCAAGGCAACTGCTCGCACCAAGGACCAGCA
TGAGC
Found at i:3487685 original size:126 final size:126
Alignment explanation
Indices: 3487458--3487686 Score: 314
Period size: 126 Copynumber: 1.8 Consensus size: 126
3487448 ACTTATGCTA
* * *
3487458 ATGGTGGTCGAAGCAACTACCCGTACTAAGGGCCATCTTCTACCAATGGTGGTTGAGGCAACCGC
1 ATGGTGGTCGAAGCAACTACCCGTACCAAGAGCCATCTTCTACCAATGGTGGTTGAGGCAACAGC
* *
3487523 CCGTACCAAGGCCCAACACGTGTCGATGGTGTTCGAGGCAATTGCCCGCAAGCATGTGCCG
66 CCGCACCAAGGCCCAACACGTGTCGATGGTGCTCGAGGCAATTGCCCGCAAGCATGTGCCG
* * * * * *
3487584 ATGGTGTTCGATGCAACTGCCCGTACCAAGAGCCATCTTCTATCGATGGTGGTTGAGGCAAGAGC
1 ATGGTGGTCGAAGCAACTACCCGTACCAAGAGCCATCTTCTACCAATGGTGGTTGAGGCAACAGC
** * **
3487649 CCGCACCAAGGGTCAGCTTGTGTCGATGGTGCTCGAGG
66 CCGCACCAAGGCCCAACACGTGTCGATGGTGCTCGAGG
3487687 TAACCGCCAG
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
126 87 1.00
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (126 bp):
ATGGTGGTCGAAGCAACTACCCGTACCAAGAGCCATCTTCTACCAATGGTGGTTGAGGCAACAGC
CCGCACCAAGGCCCAACACGTGTCGATGGTGCTCGAGGCAATTGCCCGCAAGCATGTGCCG
Found at i:3496416 original size:45 final size:45
Alignment explanation
Indices: 3496348--3496451 Score: 172
Period size: 45 Copynumber: 2.3 Consensus size: 45
3496338 GGGTGAACAA
* * *
3496348 GTGCCGATGGTGGTCGATGCGACTGCCCGCACCAAGGGCTAGCTT
1 GTGCCGATGGTGGTCGATGCGACTGCCCACACCAAGGGCCAGCGT
*
3496393 GTGTCGATGGTGGTCGATGCGACTGCCCACACCAAGGGCCAGCGT
1 GTGCCGATGGTGGTCGATGCGACTGCCCACACCAAGGGCCAGCGT
3496438 GTGCCGATGGTGGT
1 GTGCCGATGGTGGT
3496452 TGAGGCAACC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.15, C:0.27, G:0.38, T:0.20
Consensus pattern (45 bp):
GTGCCGATGGTGGTCGATGCGACTGCCCACACCAAGGGCCAGCGT
Found at i:3496571 original size:10 final size:10
Alignment explanation
Indices: 3496551--3496579 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
3496541 GGCCCGGCAT
3496551 GTGTT-GATG
1 GTGTTCGATG
3496560 GTGTTCGATG
1 GTGTTCGATG
3496570 GTGTTCGATG
1 GTGTTCGATG
3496580 CAACCGCCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.26
10 14 0.74
ACGTcount: A:0.10, C:0.07, G:0.41, T:0.41
Consensus pattern (10 bp):
GTGTTCGATG
Found at i:3496679 original size:45 final size:44
Alignment explanation
Indices: 3496566--3496713 Score: 118
Period size: 45 Copynumber: 3.3 Consensus size: 44
3496556 GATGGTGTTC
* * * * * *
3496566 GATGGTGTTCGATGCAACCGCCCACACCAGGGGCCATCTTCTAT
1 GATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTCTCT
** * *
3496610 CGATGGTGGTTAAGGTAAGAGCCCGCACCAAGGGCCATCTTCTGCT
1 -GATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTCT-CT
** * **
3496656 GATGGTGGTCGAGGCAATTGCCCGTACCAAAAGCCATCTTCTACT
1 GATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTCT-CT
*
3496701 GAT-GTGGCCGAGG
1 GATGGTGGTCGAGG
3496714 TAACCCCCCC
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
44 9 0.11
45 72 0.88
46 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (44 bp):
GATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTCTCT
Found at i:3497860 original size:45 final size:45
Alignment explanation
Indices: 3497371--3498973 Score: 709
Period size: 45 Copynumber: 35.7 Consensus size: 45
3497361 ATGGTGCTCG
* * * * ** *
3497371 AGGGCCATCTTCTACTGATGGTGGTCGAGGTAACTACCTGCACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * *** * *
3497416 AGGCCCAACACATGCCAATGGTGTTCGAGGCAACCGCCCGCACC-
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * *
3497460 AGTGGCTAGCATGTGCCGATGGTGTTCGACGCAACCTCCCGCACCA
1 AG-GGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* ** * ** ** **
3497506 GGGGTAATCTTCTATCGATGGTGGTCGAGGCAAGAGCCTACACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * *
3497551 AGGGCTGA-CTTATGCCAATGGTGGTCGAGGCAATCGTCCACACCA
1 AGGGC-CATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* ** * * * **
3497596 AGGGCCATCTTTTATCGATGGTGTTAGACGCAACCGCCTACACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * ** *
3497641 TGGGCCATCTTCTACCTATGGTGGTTGAGGCAAGAGCCCACACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
** * * * * * * *
3497686 A-GGCCGGCTTATGCCAATGGTGCTTGAGGTAATCGCCCGTA-CA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * ** ** * * * *
3497729 AAGGCCTAGCACGTGTTGATGCTGTTCGAGGCAACCACCCGTACCA
1 AGGGCC-ATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * * * * ** *
3497775 AGGCCCAGCATGTGTCGATAGTGTTCGACGTAACTACCTGCACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * *
3497820 GGGGCCATCTTGTGCCGATAGTGGTCAAGGCAACCGCCTGCACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* ** * * * * *
3497865 AGGGTCGGCTTGTGTCGATGGGGGTCAAGGCAACCGCTCGCACTA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * ** *
3497910 GGGGCCATCTTCTACCGATTGTGGTCGAGGCAAGAGCCCGCACTA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * *
3497955 AGGGCCAGT-TTGTGCCAATGGTGCTCGAGGCAACTGCCCGTACCA
1 AGGGCCA-TCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* ** * * * * * **
3498000 A-GGCCTAGCACGTGTCGATGGTGTTTGAGGCAATCACCCATACCA
1 AGGGCC-ATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * ** *
3498045 AGGCCCAGCATGTGTTGATGGTGGTCGAGGCAACCGCCAGCACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * **
3498090 AGGTCCAACATGTGCCGATGGTGTTCGACGCAACTACCCGCACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * *
3498135 GGGGCCATCTTGTGCCGA-GGTGGTCGAGGCAACAGCCTGCACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * *
3498179 AGGGTCAGCTTGTGTCGATGGTGGTCGAGGCAACTGCCCGCACTA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * **
3498224 GGGGCCACCTTCTGTCGATTGTGGTCGAGGCAAGAGCCCGCACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * ** * * *
3498269 CGGACCGGCTTGTGCCGATGGTGCTCGAGGCAACCACCCACACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * ** *
3498314 GGGGCCATGTTCTACCGATGGTGGTCGAGGTAACCGTTCGTACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * * * *
3498359 AGGCCCAGCATGTGCCGATGGTGTTCGACGCAATCGCCTGCACTA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * * * *
3498404 GGGGCCATCTTATGTCAATAGTGGTAGAGGTAACCGCCTGCACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* ** * * * * * *
3498449 AGGGTCGGCTAGTGCTGATGGTGCTCGAGGTAACTGCCCGCATCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* ** * * * * ** **
3498494 AGGCCCGA-CACGTGTCAATAGTGTTTAAGGCAACCGCCCATACCA
1 AGGGCC-ATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * *
3498539 GGGGCTATCTTCTACCGATGGTGGTC-ATGGCAATCGCCTGCACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGA-GGCAACCGCCCGCACCA
* * * * ** * *
3498584 AGGCCCATCATGTGCCGATGGTGTTCGATGCAACTACCCGTACCC
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * *
3498629 GGGGCCATCTTGTGCCGATGGTAGTCGAGGTAACAGCCTGCACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
** * * *
3498674 A-GGCC-TGACAAGTGCCGATGGTGTTCGAGGTAACCGCTCGCACCA
1 AGGGCCAT--CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * *
3498719 A-GGCTCGA-CATGTGCTGATGGTGGTCGAGGTAATCACCCACACCA
1 AGGGC-C-ATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * *
3498764 CGGCCCAGCATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * *
3498809 GGGGCCATCTTGTGCCGATGGTGGTCAAGGCAACCGTCCGTACCAA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-A
* * * * * *
3498855 AGGTCGA-CTTATGCCGATGGTGGTTGAGGTAACCGCCCGTACCA
1 AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * * * **
3498899 AGGGTCGA-CATGTGCCGATGGTGATCGAGGTAATCGCTTGCACC-
1 AGGG-CCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * **
3498943 AGGGCCCAGCTTGTGTCGATGACGGTCGAGG
1 AGGG-CCATCTTGTGCCGATGGTGGTCGAGG
3498974 TAAGTACCCA
Statistics
Matches: 1143, Mismatches: 389, Indels: 52
0.72 0.25 0.03
Matches are distributed among these distances:
43 4 0.00
44 92 0.08
45 1026 0.90
46 21 0.02
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (45 bp):
AGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
Found at i:3498211 original size:179 final size:180
Alignment explanation
Indices: 3498011--3498343 Score: 391
Period size: 179 Copynumber: 1.9 Consensus size: 180
3498001 GGCCTAGCAC
* * * * * *
3498011 GTGTCGATGGTGTTTGAGGCAA-TCACCCATACCAAGGCCCAGCATGTGTTGATGGTGGTCGAGG
1 GTGTCGATGGTGGTCGAGGCAACT-ACCCACACCAAGGCCCACCATCTGTCGATGGTGGTCGAGG
* * * * *
3498075 CAACCGCCAGCACCAAGGTCCAACATGTGCCGATGGTGTTCGACGCAACTACCCGCACCAGGGGC
65 CAACAGCCAGCACCAAGGACCAACATGTGCCGATGGTGCTCGACGCAACCACCCACACCAGGGGC
* *
3498140 CATCTTGTGCCGA-GGTGGTCGAGGCAACAGCCTGCACCAAGGGTCAGCTT
130 CATCTTCTACCGATGGTGGTCGAGGCAACAGCCTGCACCAAGGGTCAGCTT
* * * * * * *
3498190 GTGTCGATGGTGGTCGAGGCAACTGCCCGCACTAGGGGCCACCTTCTGTCGATTGTGGTCGAGGC
1 GTGTCGATGGTGGTCGAGGCAACTACCCACACCAAGGCCCACCATCTGTCGATGGTGGTCGAGGC
* * * ** * *
3498255 AAGAGCCCGCACCACGGACCGGCTTGTGCCGATGGTGCTCGAGGCAACCACCCACACCAGGGGCC
66 AACAGCCAGCACCAAGGACCAACATGTGCCGATGGTGCTCGACGCAACCACCCACACCAGGGGCC
*
3498320 ATGTTCTACCGATGGTGGTCGAGG
131 ATCTTCTACCGATGGTGGTCGAGG
3498344 TAACCGTTCG
Statistics
Matches: 124, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
179 112 0.90
180 12 0.10
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (180 bp):
GTGTCGATGGTGGTCGAGGCAACTACCCACACCAAGGCCCACCATCTGTCGATGGTGGTCGAGGC
AACAGCCAGCACCAAGGACCAACATGTGCCGATGGTGCTCGACGCAACCACCCACACCAGGGGCC
ATCTTCTACCGATGGTGGTCGAGGCAACAGCCTGCACCAAGGGTCAGCTT
Found at i:3498335 original size:314 final size:313
Alignment explanation
Indices: 3497433--3498401 Score: 987
Period size: 314 Copynumber: 3.1 Consensus size: 313
3497423 ACACATGCCA
* *
3497433 ATGGTGTTCGAGGCAACCGCCCGCACC-AGTGGCTAGCATGTGCCGATGGTGTTCGACGCAACCT
1 ATGGTGTTCGAGGCAACCGCCCGCACCAAG-GCCCAGCATGTGCCGATGGTGTTCGACGCAA-CT
** * ** * * *
3497497 -CCCGCACCAGGGGTAATCTTCTATCGATGGTGGTCGAGGCAAGAGCCTACACCAAGGG-CTGAC
64 ACCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACAGCCTGCACCAAGGGTCAG-C
* * * * * * * * * * *
3497560 TTATGCCAATGGTGGTCGAGGCAA-TCGTCCACACCAAGGGCCATCTTTTATCGATGGTGTTAGA
128 TTGTGTCGATGGTGGTCGAGGCAACT-GCCCGCACTAGGGGCCATCTTCTATCGATTGTGGTCGA
* ** ** * * * * * * * *
3497624 CGCAACCGCCTACACCATGGGCCATCTTCTACCTATGGTGGTTGAGGCAA-GAGCCCACACCAAG
192 GGCAAGAGCCCGCACCAAGGGCCAGCTTGTGCCAATGGTGCTCGAGGCAACCA-CCCACACCAAG
* * * * * *
3497688 GCCGGCTTATGCCAATGGTGCTTGAGGTAATCGCCCGTACAAAGGCCTAGCACGTGTTG
256 GCCTG-TTCTGCCGATGGTGCTTGAGGTAATCGCCCGTACCAAGGCCCAGCATGTGTTG
* * * * * *
3497747 ATGCTGTTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATAGTGTTCGACGTAACTAC
1 ATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGACGCAACTAC
* * * * *
3497812 CTGCACCAGGGGCCATCTTGTGCCGATAGTGGTCAAGGCAACCGCCTGCACCAAGGGTCGGCTTG
66 CCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACAGCCTGCACCAAGGGTCAGCTTG
* * * * *
3497877 TGTCGATGGGGGTCAAGGCAACCGCTCGCACTAGGGGCCATCTTCTACCGATTGTGGTCGAGGCA
131 TGTCGATGGTGGTCGAGGCAACTGCCCGCACTAGGGGCCATCTTCTATCGATTGTGGTCGAGGCA
* * ** **
3497942 AGAGCCCGCACTAAGGGCCAGTTTGTGCCAATGGTGCTCGAGGCAACTGCCCGTACCAAGGCCTA
196 AGAGCCCGCACCAAGGGCCAGCTTGTGCCAATGGTGCTCGAGGCAACCACCCACACCAAGGCCT-
** * * * * *
3498007 GCACGTGTCGATGGTGTTTGAGGCAATCACCCATACCAAGGCCCAGCATGTGTTG
260 GTTC-TGCCGATGGTGCTTGAGGTAATCGCCCGTACCAAGGCCCAGCATGTGTTG
* * * *
3498062 ATGGTGGTCGAGGCAACCGCCAGCACCAAGGTCCAACATGTGCCGATGGTGTTCGACGCAACTAC
1 ATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGACGCAACTAC
3498127 CCGCACCAGGGGCCATCTTGTGCCGA-GGTGGTCGAGGCAACAGCCTGCACCAAGGGTCAGCTTG
66 CCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACAGCCTGCACCAAGGGTCAGCTTG
* *
3498191 TGTCGATGGTGGTCGAGGCAACTGCCCGCACTAGGGGCCACCTTCTGTCGATTGTGGTCGAGGCA
131 TGTCGATGGTGGTCGAGGCAACTGCCCGCACTAGGGGCCATCTTCTATCGATTGTGGTCGAGGCA
* * * * *
3498256 AGAGCCCGCACCACGGACCGGCTTGTGCCGATGGTGCTCGAGGCAACCACCCACACCAGGGGCCA
196 AGAGCCCGCACCAAGGGCCAGCTTGTGCCAATGGTGCTCGAGGCAACCACCCACACCA-AGGCC-
* * * * ** **
3498321 TGTTCTACCGATGGTGGTCGAGGTAACCGTTCGTACCAAGGCCCAGCATGTGCCG
259 TGTTCTGCCGATGGTGCTTGAGGTAATCGCCCGTACCAAGGCCCAGCATGTGTTG
* * *
3498376 ATGGTGTTCGACGCAATCGCCTGCAC
1 ATGGTGTTCGAGGCAACCGCCCGCAC
3498402 TAGGGGCCAT
Statistics
Matches: 528, Mismatches: 118, Indels: 18
0.80 0.18 0.03
Matches are distributed among these distances:
313 2 0.00
314 393 0.74
315 132 0.25
316 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (313 bp):
ATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGACGCAACTAC
CCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACAGCCTGCACCAAGGGTCAGCTTG
TGTCGATGGTGGTCGAGGCAACTGCCCGCACTAGGGGCCATCTTCTATCGATTGTGGTCGAGGCA
AGAGCCCGCACCAAGGGCCAGCTTGTGCCAATGGTGCTCGAGGCAACCACCCACACCAAGGCCTG
TTCTGCCGATGGTGCTTGAGGTAATCGCCCGTACCAAGGCCCAGCATGTGTTG
Found at i:3509720 original size:26 final size:26
Alignment explanation
Indices: 3509684--3509736 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3509674 GTTGACTTAG
3509684 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
3509710 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
3509736 G
1 G
3509737 ATCAGACAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:3512433 original size:35 final size:35
Alignment explanation
Indices: 3512351--3512438 Score: 122
Period size: 35 Copynumber: 2.5 Consensus size: 35
3512341 TTAATCTCGG
* *
3512351 TCATTTTCAATTTCTAACCCACGGTTTAATCCTAA
1 TCATTTTCATTTTCTGACCCACGGTTTAATCCTAA
* *
3512386 TCATTTTTATTTTCTGACCCATGGTTTAATCCTAA
1 TCATTTTCATTTTCTGACCCACGGTTTAATCCTAA
* *
3512421 TCGTTTTCATTTTTTGAC
1 TCATTTTCATTTTCTGAC
3512439 TCGTGAGTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.23, C:0.22, G:0.08, T:0.48
Consensus pattern (35 bp):
TCATTTTCATTTTCTGACCCACGGTTTAATCCTAA
Found at i:3512459 original size:70 final size:70
Alignment explanation
Indices: 3512385--3512520 Score: 191
Period size: 70 Copynumber: 1.9 Consensus size: 70
3512375 TTTAATCCTA
* *
3512385 ATCATTTTTATTTTCTGACCCATGGTTTAATCCTAATCGTTTTCATTTTTTGACTCGTGAGTTAA
1 ATCATTTTTATTTTCTGACCCATGATTTAATCCTAATCATTTTCATTTTTTGACTCGTGAGTTAA
3512450 TCTGG
66 TCTGG
* ** * * * *
3512455 ATCATTTTTATTTTTTGACTTATGATTTAATCTTGATCATTTTCATTTTTTGACTTGTGATTTAA
1 ATCATTTTTATTTTCTGACCCATGATTTAATCCTAATCATTTTCATTTTTTGACTCGTGAGTTAA
3512520 T
66 T
3512521 TTTGGTANNN
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
70 57 1.00
ACGTcount: A:0.21, C:0.13, G:0.12, T:0.54
Consensus pattern (70 bp):
ATCATTTTTATTTTCTGACCCATGATTTAATCCTAATCATTTTCATTTTTTGACTCGTGAGTTAA
TCTGG
Found at i:3512510 original size:35 final size:35
Alignment explanation
Indices: 3512375--3512520 Score: 150
Period size: 35 Copynumber: 4.2 Consensus size: 35
3512365 TAACCCACGG
* * * *
3512375 TTTAATCCTAATCATTTTTATTTTCTGACCCATGG
1 TTTAATCCTAATCATTTTCATTTTTTGACTCATGA
* *
3512410 TTTAATCCTAATCGTTTTCATTTTTTGACTCGTGA
1 TTTAATCCTAATCATTTTCATTTTTTGACTCATGA
* * * *
3512445 GTTAAT-CTGGATCATTTTTATTTTTTGACTTATGA
1 TTTAATCCT-AATCATTTTCATTTTTTGACTCATGA
* * **
3512480 TTTAATCTTGATCATTTTCATTTTTTGACTTGTGA
1 TTTAATCCTAATCATTTTCATTTTTTGACTCATGA
3512515 TTTAAT
1 TTTAAT
3512521 TTTGGTANNN
Statistics
Matches: 93, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
34 2 0.02
35 90 0.97
36 1 0.01
ACGTcount: A:0.22, C:0.14, G:0.11, T:0.53
Consensus pattern (35 bp):
TTTAATCCTAATCATTTTCATTTTTTGACTCATGA
Found at i:3516057 original size:45 final size:45
Alignment explanation
Indices: 3516008--3516102 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
3515998 CATGTGCCCA
** *
3516008 CACCAAGGGCCAGTGCGTGCCGATGGTGGTCGATGG-GACTACTCG
1 CACCAAGGGCCAACGCGTGCCGATGGTGGTCGA-GGCAACTACTCG
*
3516053 CACCAAGGGCCAACGTGTGCCGATGGTGGTCGAGGCAACTACTCG
1 CACCAAGGGCCAACGCGTGCCGATGGTGGTCGAGGCAACTACTCG
*
3516098 TACCA
1 CACCA
3516103 GCTCGAGACA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 2 0.05
45 42 0.95
ACGTcount: A:0.21, C:0.28, G:0.34, T:0.17
Consensus pattern (45 bp):
CACCAAGGGCCAACGCGTGCCGATGGTGGTCGAGGCAACTACTCG
Found at i:3516259 original size:45 final size:45
Alignment explanation
Indices: 3516187--3516972 Score: 230
Period size: 45 Copynumber: 17.5 Consensus size: 45
3516177 GAAATGTGCT
* * * *
3516187 GATGGTGTTCGACGTAACC-ACTCGCACCAAGGGCCATCTTCTGCG
1 GATGGTGGTCGAGGTAACCGCCT-GCACCAAGGGCCATCTTCTGCC
** * * * *
3516232 GATGGTGGTCGAGGTAAGAGCCTGCACCAAGAGTCGA-CTTGTGTC
1 GATGGTGGTCGAGGTAACCGCCTGCACCAAG-GGCCATCTTCTGCC
* * *
3516277 GATGGTGGTCGAGGCAACCGCCTGCACTAAGGGCCATCTTCTACC
1 GATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCCATCTTCTGCC
** * *
3516322 GATGGTGGTCGA-GTCAACCGCCCACACCAAGGGCCAGCTTATGCC
1 GATGGTGGTCGAGGT-AACCGCCTGCACCAAGGGCCATCTTCTGCC
* * * * * * **
3516367 GATGGTGCTTGAGGTAACTG-CTCGCACTAAAGGCCAGCTTGAGCC
1 GATGGTGGTCGAGGTAACCGCCT-GCACCAAGGGCCATCTTCTGCC
* * * * * * **
3516412 GATGGTGCTC-AGGCAACCGCCCGCACCAAGGGTCATTTTTTGTT
1 GATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCCATCTTCTGCC
* * * * * * *
3516456 GATGGTGGTCAAGGCAGCCGCCCGCACCAAGGCCCAGC-ACATGCC
1 GATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCCATCTTC-TGCC
* * * * * * * * *
3516501 GATAGTGTTCGAGGCAACCG-ATCGTACC-AGGGACTAGCATGTGCC
1 GATGGTGGTCGAGGTAACCGCCT-GCACCAAGGG-CCATCTTCTGCC
* * * * * ** * **
3516546 GATTGTGTTCGATGCAATCGCCCACACCAGGGGCCATCTTCTGTT
1 GATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCCATCTTCTGCC
* ** * * * * ** * *
3516591 GATGGTGGTCGACGTAAGAGCCCGTACCAATGGTCGGCTTATGCT
1 GATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCCATCTTCTGCC
* * ** * * * *
3516636 GATGCTGGTCGAGGCAACTACCCGTACTAAGGGCCATCTTCTACC
1 GATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCCATCTTCTGCC
* * * * * *
3516681 AATGGTGGTTGAGGCAACCGCCTGCACCAAGGCCCAAC-ACGTGCC
1 GATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCCATCTTC-TGCC
* ** ** * * * * * *
3516726 GATGGTGTTCGAGCCAATTGCCCGCACCAGGGGCCAGCATGTGTC
1 GATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCCATCTTCTGCC
* * * * ** * * *
3516771 GATAGTGTTCGATGCAA-CTTCTCGTACCAGGGGCCATCTTCTGTC
1 GATGGTGGTCGAGGTAACCGCCT-GCACCAAGGGCCATCTTCTGCC
* *** * * * *
3516816 GATAGTGGTCGAGGTAAGATCCCGCACCAAGGGTCAGCTTGTGCC
1 GATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCCATCTTCTGCC
* * * * *
3516861 GATGGTGCTCGAGGTAACCGCCCGTACCAA-GGCCTAGC-ACGTGCC
1 GATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCC-ATCTTC-TGCC
* * * * *** * *
3516906 GATGGTGTTCGAGGCAACCG-CTCGTACCAAGGCCCAGGATGTGGC
1 GATGGTGGTCGAGGTAACCGCCT-GCACCAAGGGCCATCTTCTGCC
*
3516951 GATGGTGGTCGAGGCAACCGCC
1 GATGGTGGTCGAGGTAACCGCC
3516973 AGTGTCACAG
Statistics
Matches: 539, Mismatches: 178, Indels: 47
0.71 0.23 0.06
Matches are distributed among these distances:
44 43 0.08
45 480 0.89
46 16 0.03
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.20
Consensus pattern (45 bp):
GATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCCATCTTCTGCC
Found at i:3525714 original size:45 final size:45
Alignment explanation
Indices: 3525650--3525750 Score: 148
Period size: 45 Copynumber: 2.2 Consensus size: 45
3525640 GAGCAGGTGT
** * *
3525650 CGATGGTGGTCGATGCGACTGCCCGTACCAAAGGCTAGCTTGTGC
1 CGATGGTGGTCGATGCGACTGCCCACACCAAAGGCCAGCGTGTGC
*
3525695 CGATGGTGGTCGATGCGACTGCCCACACCAAGGGCCAGCGTGTGC
1 CGATGGTGGTCGATGCGACTGCCCACACCAAAGGCCAGCGTGTGC
*
3525740 CAATGGTGGTC
1 CGATGGTGGTC
3525751 AAGGCAACCG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.18, C:0.28, G:0.35, T:0.20
Consensus pattern (45 bp):
CGATGGTGGTCGATGCGACTGCCCACACCAAAGGCCAGCGTGTGC
Found at i:3525764 original size:45 final size:45
Alignment explanation
Indices: 3525676--3525769 Score: 107
Period size: 45 Copynumber: 2.1 Consensus size: 45
3525666 GACTGCCCGT
* * * * * * *
3525676 ACCAAAGGCTAGCTTGTGCCGATGGTGGTCGATGCGACTGCCCAC
1 ACCAAAGGCCAGCGTGTGCCAATGGTGGTCAAGGCAACCGCCCAC
* *
3525721 ACCAAGGGCCAGCGTGTGCCAATGGTGGTCAAGGCAACCGCCCAT
1 ACCAAAGGCCAGCGTGTGCCAATGGTGGTCAAGGCAACCGCCCAC
3525766 ACCA
1 ACCA
3525770 GCTCGAGTCA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.23, C:0.31, G:0.30, T:0.16
Consensus pattern (45 bp):
ACCAAAGGCCAGCGTGTGCCAATGGTGGTCAAGGCAACCGCCCAC
Found at i:3525867 original size:10 final size:10
Alignment explanation
Indices: 3525852--3525877 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
3525842 CCAGCATGTG
3525852 TCGATGGTGT
1 TCGATGGTGT
3525862 TCGATGGTGT
1 TCGATGGTGT
3525872 TCGATG
1 TCGATG
3525878 CAACTGCCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.38, T:0.38
Consensus pattern (10 bp):
TCGATGGTGT
Found at i:3525909 original size:55 final size:55
Alignment explanation
Indices: 3525808--3525915 Score: 144
Period size: 55 Copynumber: 2.0 Consensus size: 55
3525798 TGGCATGTGC
*
3525808 CGATGGTGTTCGAGGCAACTGCCCGCACCAAAGCCCAGCATGTGTCGATGGTGTT
1 CGATGGTGTTCGAGGCAACTGCCCGCACCAAAGCCCAGCATCTGTCGATGGTGTT
* * ** * * *
3525863 CGATGGTGTTCGATGCAACTGCCCGTACCAGGGGCCATCTTCTGTCGATGGTG
1 CGATGGTGTTCGAGGCAACTGCCCGCACCAAAGCCCAGCATCTGTCGATGGTG
3525916 GTTGAGGTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (55 bp):
CGATGGTGTTCGAGGCAACTGCCCGCACCAAAGCCCAGCATCTGTCGATGGTGTT
Found at i:3525932 original size:45 final size:45
Alignment explanation
Indices: 3525863--3526030 Score: 183
Period size: 45 Copynumber: 3.7 Consensus size: 45
3525853 CGATGGTGTT
* * * * * **
3525863 CGATGGTGTTCGATGCAACTGCCCGTACCAGGGGCCATCTTCTGT
1 CGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTCTAC
* * *
3525908 CGATGGTGGTTGAGGTAAGAGCCCGCACCAAGGGCCATCTTCTAC
1 CGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTCTAC
* *
3525953 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGAGCCATCTTCTAC
1 CGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTCTAC
* * ** *
3525998 TGATGGTGGCCGAGGCAACCCCCCACACCAAGG
1 CGATGGTGGTCGAGGCAACAGCCCGCACCAAGG
3526031 CCCAGTGTCA
Statistics
Matches: 103, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 103 1.00
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (45 bp):
CGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTCTAC
Found at i:3527465 original size:269 final size:270
Alignment explanation
Indices: 3526958--3527484 Score: 574
Period size: 269 Copynumber: 2.0 Consensus size: 270
3526948 CCTACACCAA
* * ** *
3526958 GGGCCATCTTCTACCTGTGGTGGTTGAGGCAAGAGCCCACACCAAGGGCCGGTTTATGCCGATAG
1 GGGCCATCTTCTACCTATGGTGGTCGAGGCAAGAGCCCACACCAAGGGCCAATTTATGCCAATAG
* * * * * *
3527023 TGCTTGAGGTAATCGCTCGTACAAAGGCCTAGCATGTGCTGATGCTGTTTGAGGCAACCGCCCGT
66 TGCTCGAGGCAATCGCTCGTACAAAGGCCTAGCAAGTGCCGATGCTGTTCGAGGCAACCGCCCAT
* * * * * * * * *
3527088 ACCAAGACCCAGCATGTGCCGATGGTGTTCAACGTAACTACCTGCACCAGGGGCCATCTTATGCC
131 ACCAAGACCCAGCATGTGCCGATGGTGGTCAACGCAACCACCAGCACCAAGGCCCAACATATACC
* * * * * *
3527153 GATAGTGGTCAAGGTAACCGCCTGCACCAAGGGTCGGCTTGTGTCGATGGGGGTCAAGGCAACCG
196 GATAGTGGTCAAGGCAACCACCCGCACCAAGGGCCAGCTTGTGTCGATGCGGGTCAAGGCAACCG
3527218 CTCGCACTAG
261 CTCGCACTAG
* * * * *
3527228 GGGCCATCTTCTACCTAT-TTGGTCGAGGCAAGAGCCCGCACTAAGGGCCAATTTGTGCCAATGG
1 GGGCCATCTTCTACCTATGGTGGTCGAGGCAAGAGCCCACACCAAGGGCCAATTTATGCCAATAG
* * *
3527292 TGCTCGAGGCAA-CTGCTCGTACCAAGGCCTAGCAAGTGCCGATGGTGTTCGAGGCAACCGCTCA
66 TGCTCGAGGCAATC-GCTCGTACAAAGGCCTAGCAAGTGCCGATGCTGTTCGAGGCAACCGCCCA
* * * * * *
3527356 TACCAA-AGTCCAGCATGTGCTGATGGTGGTCGAGGCAACCGCCAGCACCAAGGCCCAACATGTA
130 TACCAAGA-CCCAGCATGTGCCGATGGTGGTCAACGCAACCACCAGCACCAAGGCCCAACATATA
* * * * * * * * *
3527420 CCGATGGTGTTCGATGCAACTACCCGCACCAGGGGCCATCTTGTGTCGATGCTGGTCGAGGCAAC
194 CCGATAGTGGTCAAGGCAACCACCCGCACCAAGGGCCAGCTTGTGTCGATGCGGGTCAAGGCAAC
3527485 AGCCTGCACC
Statistics
Matches: 206, Mismatches: 49, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
268 2 0.01
269 187 0.91
270 17 0.08
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (270 bp):
GGGCCATCTTCTACCTATGGTGGTCGAGGCAAGAGCCCACACCAAGGGCCAATTTATGCCAATAG
TGCTCGAGGCAATCGCTCGTACAAAGGCCTAGCAAGTGCCGATGCTGTTCGAGGCAACCGCCCAT
ACCAAGACCCAGCATGTGCCGATGGTGGTCAACGCAACCACCAGCACCAAGGCCCAACATATACC
GATAGTGGTCAAGGCAACCACCCGCACCAAGGGCCAGCTTGTGTCGATGCGGGTCAAGGCAACCG
CTCGCACTAG
Found at i:3527476 original size:90 final size:90
Alignment explanation
Indices: 3526608--3528329 Score: 576
Period size: 90 Copynumber: 19.2 Consensus size: 90
3526598 ACACTAGCAC
* * ** * * * ** *
3526608 GTGCTGATGGTGTTCGAGGCAACCACCCATACCAAGGGCCAGCTTGTGTCGATGGTGCTTAAAGC
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
* * * *
3526673 AATCGTCC-GCACCAAGGGCCATCTT
66 AACCG-CCTGCACCAAGGCCCAACAT
* * * * * * * * * *** * * *
3526698 CTGCTGATGGTGGTCGAGGTAACTGCCTGCACCAAGGCCCAACACATGCCAATGGTGTTCGAGGC
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
* * *
3526763 AACCGCCCGCACC-AGTGGCCAGCAT
66 AACCGCCTGCACCAAG-GCCCAACAT
* * * * ** * * *
3526788 GTGCCGATGGTGTTCGATGTAACCTCCTGCACCAGGGGTAATCTTCTGTCGATGGTGGTCAAGGT
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
** * * * *
3526853 AAGAGCCTACACCAAGGGCCGACTT
66 AACCGCCTGCACCAAGGCCCAACAT
* ** * * * * * * * *
3526878 GTGCCGATGGTGGTT-GAGGCAATCATCCACACCAAGGGCTATCTTTTATAGATGGTGTTCGATG
1 GTGCCGATGGT-GTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGG
* * * *
3526942 CAACCGCCTACACCAAGGGCCATCTT
65 CAACCGCCTGCACCAAGGCCCAACAT
* * ** * * * * * * * *
3526968 CTACCTG-TGGTGGTT-GAGGCAAGAGCCCACACCAAGGGCCGGT-TTATGCCGATAGTGCTTGA
1 GTGCC-GATGGT-GTTCGAGGCAACCGCCCGCACCAGGGGCC-ATCTTGTGTCGATGGTGGTCGA
* * * * * *
3527030 GGTAATCG-CTCGTACAAAGGCCTAGCAT
63 GGCAACCGCCT-GCACCAAGGCCCAACAT
* * * * * ** * * * * * * *
3527058 GTGCTGATGCTGTTTGAGGCAACCGCCCGTACCAAGACCCAGCATGTGCCGATGGTGTTCAACGT
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
** * * * *
3527123 AACTACCTGCACCAGGGGCCATCTT
66 AACCGCCTGCACCAAGGCCCAACAT
* * * * * * * * ** * *
3527148 ATGCCGATAGTGGTCAAGGTAACCGCCTGCACCAAGGGTCGGCTTGTGTCGATGGGGGTCAAGGC
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
* * * * *
3527213 AACCG-CTCGCACTAGGGGCCATCTT
66 AACCGCCT-GCACCAAGGCCCAACAT
* * * * * ** * * * * *
3527238 CTACCTAT-TTGGTCGAGGCAAGAGCCCGCACTAAGGGCCAAT-TTGTGCCAATGGTGCTCGAGG
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCC-ATCTTGTGTCGATGGTGGTCGAGG
* * * * *
3527301 CAACTG-CTCGTACCAAGGCCTAGCAA
65 CAACCGCCT-GCACCAAGGCCCAACAT
* ** ** * * *
3527327 GTGCCGATGGTGTTCGAGGCAACCGCTCATACCAAAGTCCAGCATGTG-CTGATGGTGGTCGAGG
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTC-GATGGTGGTCGAGG
*
3527391 CAACCGCCAGCACCAAGGCCCAACAT
65 CAACCGCCTGCACCAAGGCCCAACAT
* * ** *
3527417 GTACCGATGGTGTTCGATGCAACTACCCGCACCAGGGGCCATCTTGTGTCGATGCTGGTCGAGGC
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
* ** * *
3527482 AACAGCCTGCACCAAGGGTCAGCTT
66 AACCGCCTGCACCAAGGCCCAACAT
* * * * *
3527507 GTGCCGATGATGGTCGAGGC-A-----CGCACCAGGGGCCATCTTCTGTCGATTGTGGTGGAGGC
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
** ** * ** ** *
3527566 AAGAGCCCACACTAAGGATCGCCTT
66 AACCGCCTGCACCAAGGCCCAACAT
* * * * * * ** *
3527591 ATGCCGATGGTGCTCGAGGCAACCGCCCACACTAGGGGCCATATTCTACCGATGGTGGTCGAGGT
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
** * *
3527656 AACTACCTGTACCAAGGCCCAGCAT
66 AACCGCCTGCACCAAGGCCCAACAT
** * * * * * * * * * * *
3527681 GTGGTGATGGTGTTCAAGGCAACCACCCTCACCAAGGCCCAGCATGTATCGATGGTGTTTGACGC
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
* * * * *
3527746 AATCGCCTGCACCAGGGGCCATCTT
66 AACCGCCTGCACCAAGGCCCAACAT
* * * * * * * * * ** * *
3527771 ATGTCGATAGTGGTAGAGGTAACCGCCTGCACCAAGGGTCGGCTAGTG-CTGATGGTGCTCGAGG
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTC-GATGGTGGTCGAGG
* * * * ** *
3527835 TAACTGCCCGCATCAAGGCCTGACAC
65 CAACCGCCTGCACCAAGGCCCAACAT
* * ** ** * * ** * *
3527861 GTGTCGATAGTGTTTAAGGCAACCGCCCATACCAGGGGCTATCTTCTACCGATAGTGGTCGTGGC
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
* *
3527926 AACCGTCTGCACCAAGGCCCAGCAT
66 AACCGCCTGCACCAAGGCCCAACAT
* * * * * * * * *
3527951 GTGTCGATGGTGTTCGATGCAACTGCCCACACCCGGGGCCATCTTATGTCAATGGTAGTCGAGGT
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
* ** *
3528016 AACAGCCTGCACCAAGGCCTGACAA
66 AACCGCCTGCACCAAGGCCCAACAT
* * * * * *
3528041 GTGCCGATGGTGTTCGAGGTAACTGCTCGCACCA-AGGCTCGA-CATGTGTCAATGGTGGTCGAG
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGC-C-ATCTTGTGTCGATGGTGGTCGAG
* ** **
3528104 GTAACCGCCCACACCACA-GCCCCGCAT
64 GCAACCGCCTGCACCA-AGGCCCAACAT
* * * *
3528131 GTGTCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCAAGGC
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
* ** * *
3528196 AACCGTAC-GCACCAAGGGTCGACTT
66 AACCG-CCTGCACCAAGGCCCAACAT
* * * * * * * *
3528221 GTACCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGGTCGA-CATGTGCCGATGGTGATCGAGG
1 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACC-AGGGGCCATCTTGTGTCGATGGTGGTCGAGG
* * * * * * *
3528285 TAATCGCTTGCACCAGGGCCTAGCTT
65 CAACCGCCTGCACCAAGGCCCAACAT
* *
3528311 GTGCCGATGATGGTCGAGG
1 GTGCCGATGGTGTTCGAGG
3528330 TAAGTACCCA
Statistics
Matches: 1178, Mismatches: 419, Indels: 70
0.71 0.25 0.04
Matches are distributed among these distances:
84 69 0.06
85 1 0.00
89 82 0.07
90 1002 0.85
91 24 0.02
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.21
Consensus pattern (90 bp):
GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGC
AACCGCCTGCACCAAGGCCCAACAT
Found at i:3527596 original size:84 final size:84
Alignment explanation
Indices: 3527444--3527611 Score: 214
Period size: 84 Copynumber: 2.0 Consensus size: 84
3527434 TGCAACTACC
* ** * *
3527444 CGCACCAGGGGCCATCTTGTGTCGATGCTGGTCGAGGCAACAGCCTGCACCAAGGGTCAGCTTGT
1 CGCACCAGGGGCCATCTTCTGTCGATGCTGGTCGAGGCAACAGCCCACACCAAGGATCAGCTTAT
*
3527509 GCCGATGATGGTCGAGGCA
66 GCCGATGATGCTCGAGGCA
* * *
3527528 CGCACCAGGGGCCATCTTCTGTCGATTG-TGGTGGAGGCAAGAGCCCACACTAAGGATC-GCCTT
1 CGCACCAGGGGCCATCTTCTGTCGA-TGCTGGTCGAGGCAACAGCCCACACCAAGGATCAG-CTT
*
3527591 ATGCCGATGGTGCTCGAGGCA
64 ATGCCGATGATGCTCGAGGCA
3527612 ACCGCCCACA
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
83 1 0.01
84 69 0.96
85 2 0.03
ACGTcount: A:0.20, C:0.27, G:0.33, T:0.20
Consensus pattern (84 bp):
CGCACCAGGGGCCATCTTCTGTCGATGCTGGTCGAGGCAACAGCCCACACCAAGGATCAGCTTAT
GCCGATGATGCTCGAGGCA
Found at i:3527973 original size:45 final size:45
Alignment explanation
Indices: 3526613--3528329 Score: 353
Period size: 45 Copynumber: 38.3 Consensus size: 45
3526603 AGCACGTGCT
* ** * *
3526613 GATGGTGTTCGAGGCAACCACCCATACCAAGGGCCAGCTTGTGTC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * * * * *
3526658 GATGGTGCTT-AAAGCAATCGTCCGCACCAAGGGCCATCTTCTG-C
1 GATGGTG-TTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * * ** *
3526702 TGATGGTGGTCGAGGTAACTGCCTGCACCAAGGCCCAACACATGCC
1 -GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * *
3526748 AATGGTGTTCGAGGCAACCGCCCGCACC-AGTGGCCAGCATGTGCC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAG-GCCCAGCATGTGTC
* * * * * *** * * *
3526793 GATGGTGTTCGATGTAACCTCCTGCACCAGGGGTAATCTTCTGTC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * ** ** * * *
3526838 GATGGTGGTCAAGGTAAGAGCCTACACCAAGGGCC-GACTTGTGCC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAG-CATGTGTC
* ** * * * * * * * *
3526883 GATGGTGGTT-GAGGCAATCATCCACACCAAGGGCTATCTTTTATA
1 GATGGT-GTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* ** * * * * **
3526928 GATGGTGTTCGATGCAACCGCCTACACCAAGGGCCATCTTCTACC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
** * * * ** * *
3526973 TG-TGGTGGTT-GAGGCAAGAGCCCACACCAAGGGCCGGTTTATGCC
1 -GATGGT-GTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * * * *
3527018 GATAGTGCTT-GAGGTAATCGCTCGTACAAAGGCCTAGCATGTG-C
1 GATGGTG-TTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * *
3527062 TGATGCTGTTTGAGGCAACCGCCCGTACCAAGACCCAGCATGTGCC
1 -GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * ** * * * * * * *
3527108 GATGGTGTTCAACGTAACTACCTGCACCAGGGGCCATCTTATGCC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * * ** * *
3527153 GATAGTGGTCAAGGTAACCGCCTGCACCAAGGGTCGGCTTGTGTC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * * * * * * * **
3527198 GATGGGGGTCAAGGCAACCGCTCGCACTAGGGGCCATCTTCTACC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * ** * * *** *
3527243 TAT-TTGGTCGAGGCAAGAGCCCGCACTAAGGGCCAATTTGTGCC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * * * * *
3527287 AATGGTGCTCGAGGCAACTGCTCGTACCAAGGCCTAGCAAGTGCC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* ** * *
3527332 GATGGTGTTCGAGGCAACCGCTCATACCAAAGTCCAGCATGTG-C
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * **
3527376 TGATGGTGGTCGAGGCAACCGCCAGCACCAAGGCCCAACATGTACC
1 -GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* ** * * * *
3527422 GATGGTGTTCGATGCAACTACCCGCACCAGGGGCCATCTTGTGTC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * ** * *
3527467 GATGCTGGTCGAGGCAACAGCCTGCACCAAGGGTCAGCTTGTGCC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * * * *
3527512 GATGATGGTCGAGGC-A-----CGCACCAGGGGCCATCTTCTGTC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * ** * * ** * * *
3527551 GATTGTGGTGGAGGCAAGAGCCCACACTAAGGATC-GCCTTATGCC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAG-CATGTGTC
* * * * * * *
3527596 GATGGTGCTCGAGGCAACCGCCCACACTAGGGGCCA-TAT-TCTACC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGT--C
* * ** * *
3527641 GATGGTGGTCGAGGTAACTACCTGTACCAAGGCCCAGCATGTGGT-
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGT-GTC
* * * *
3527686 GATGGTGTTCAAGGCAACCACCCTCACCAAGGCCCAGCATGTATC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * * * * * *
3527731 GATGGTGTTTGACGCAATCGCCTGCACCAGGGGCCATCTTATGTC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * * ** *
3527776 GATAGTGGTAGAGGTAACCGCCTGCACCAAGGGTCGGC-TAGTG-C
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCAT-GTGTC
* * * * * *
3527820 TGATGGTGCTCGAGGTAACTGCCCGCATCAAGG-CCTGACACGTGTC
1 -GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAG-CATGTGTC
* ** ** * * * * * * **
3527866 GATAGTGTTTAAGGCAACCGCCCATACCAGGGGCTATCTTCTACC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * *
3527911 GATAGTGGTCGTGGCAACCGTCTGCACCAAGGCCCAGCATGTGTC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * ** * * * *
3527956 GATGGTGTTCGATGCAACTGCCCACACCCGGGGCCATCTTATGTC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * * * * * *
3528001 AATGGTAG-TCGAGGTAACAGCCTGCACCAAGG-CCTGACAAGTGCC
1 GATGGT-GTTCGAGGCAACCGCCCGCACCAAGGCCCAG-CATGTGTC
* * * *
3528046 GATGGTGTTCGAGGTAACTGCTCGCACCAAGGCTC-GACATGTGTC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAG-CATGTGTC
* * * * *
3528091 AATGGTGGTCGAGGTAACCGCCCACACCACA-GCCCCGCATGTGTC
1 GATGGTGTTCGAGGCAACCGCCCGCACCA-AGGCCCAGCATGTGTC
* * * * * *
3528136 GATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTGTGCC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* * ** ** * **
3528181 GATGGTGGTCAAGGCAACCGTACGCACCAAGGGTC-GACTTGTACC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAG-CATGTGTC
* * ** *
3528226 GATGGTGGTCGAGGCAACCGCCCGTACCAAGGGTC-GACATGTGCC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAG-CATGTGTC
* * * ** * * * *
3528271 GATGGTGATCGAGGTAATCGCTTGCACCAGGGCCTAGCTTGTGCC
1 GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
* *
3528316 GATGATGGTCGAGG
1 GATGGTGTTCGAGG
3528330 TAAGTACCCA
Statistics
Matches: 1213, Mismatches: 410, Indels: 98
0.70 0.24 0.06
Matches are distributed among these distances:
39 29 0.02
40 1 0.00
43 1 0.00
44 55 0.05
45 1104 0.91
46 21 0.02
47 1 0.00
48 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.21
Consensus pattern (45 bp):
GATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGTC
Found at i:3528180 original size:135 final size:135
Alignment explanation
Indices: 3526613--3528332 Score: 588
Period size: 135 Copynumber: 12.8 Consensus size: 135
3526603 AGCACGTGCT
* * * * * * *
3526613 GATGGTGTTCGAGGCAACCACCCATACCAAGGGCCAGCTTGTGTCGATGGTGCTT-AAAGCAATC
1 GATGGTGGTCGAGGCAACCGCCCACACCAA-GGCCAGCATGTGTCGATGGTG-TTCGAGGCAACC
* * * * * * *
3526677 GTCCGCACCAAGGGCCATCTTCTGCTGATGGTGGTCGAGGTAACTGC-CTGCACCAAGGCCCAAC
64 GCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACCGCTCTGCACCAAGGCTCGAC
** *
3526741 ACATGCC
129 ATGTGTC
* * * * * * * *
3526748 AATGGTGTTCGAGGCAACCGCCCGCACCAGTGGCCAGCATGTGCCGATGGTGTTCGATGTAACCT
1 GATGGTGGTCGAGGCAACCGCCCACACCA-AGGCCAGCATGTGTCGATGGTGTTCGAGGCAACCG
* ** * * * ** *
3526813 CCTGCACCAGGGGTAATCTTCTGTCGATGGTGGTCAAGGTAAGAGC-CTACACCAAGGGC-CGAC
65 CCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACCGCTCTGCACCAA-GGCTCGAC
* *
3526876 TTGTGCC
129 ATGTGTC
* * ** * * * * * * *
3526883 GATGGTGGTTGAGGCAATCATCCACACCAAGGGCTATCTTTTATAGATGGTGTTCGATGCAACCG
1 GATGGTGGTCGAGGCAACCGCCCACACCAA-GGCCAGCATGTGTCGATGGTGTTCGAGGCAACCG
** * * * * * ** ** *
3526948 CCTACACCAAGGGCCATCTTCTACCTG-TGGTGGTTGAGGCAAGAGC-CCACACCAAGGGC-CGG
65 CCCGCACCAGGGGCCATCTTGTGCC-GATGGTGGTCGAGGTAACCGCTCTGCACCAA-GGCTCGA
** * *
3527010 TTTATGCC
128 CATGTGTC
* * * * * * ** * * *
3527018 GATAGTGCTTGAGGTAATCGCTCGTACAAAGGCCTAGCATGTG-CTGATGCTGTTTGAGGCAACC
1 GATGGTGGTCGAGGCAACCGCCCACACCAAGGCC-AGCATGTGTC-GATGGTGTTCGAGGCAACC
* * ** * * * * * ** *
3527082 GCCCGTACCAAGACCCAGCATGTGCCGATGGTGTTCAACGTAACTAC-CTGCACCAGGGGC-C-A
64 GCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACCGCTCTGCACCA-AGGCTCGA
* * *
3527144 TCTTATGCC
128 -CATGTGTC
* * * ** * * * * * *
3527153 GATAGTGGTCAAGGTAACCGCCTGCACCAAGGGTCGGCTTGTGTCGATGGGGGTCAAGGCAACCG
1 GATGGTGGTCGAGGCAACCGCCCACACCAA-GGCCAGCATGTGTCGATGGTGTTCGAGGCAACCG
* * * * * * * ** * * * *
3527218 CTCGCACTAGGGGCCATCTTCTACCTAT-TTGGTCGAGGCAAGAGC-CCGCACTAAGGGC-CAAT
65 CCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACCGCTCTGCACCAA-GGCTCGAC
* *
3527280 TTGTGCC
129 ATGTGTC
* * * * ** * *
3527287 AATGGTGCTCGAGGCAACTGCTCGTACCAAGGCCTAGCAAGTGCCGATGGTGTTCGAGGCAACCG
1 GATGGTGGTCGAGGCAACCGCCCACACCAAGGCC-AGCATGTGTCGATGGTGTTCGAGGCAACCG
* ** ** * * * * * * * *
3527352 CTCATACCAAAGTCCAGCATGTGCTGATGGTGGTCGAGGCAACCGC-CAGCACCAAGGCCCAACA
65 CCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACCGCTCTGCACCAAGGCTCGACA
**
3527416 TGTACC
130 TGTGTC
* * ** * * * * * * *
3527422 GATGGTGTTCGATGCAACTACCCGCACCAGGGGCCATCTTGTGTCGATGCTGGTCGAGGCAACAG
1 GATGGTGGTCGAGGCAACCGCCCACACCA-AGGCCAGCATGTGTCGATGGTGTTCGAGGCAACCG
* * * * * * *
3527487 CCTGCACCAAGGGTCAGCTTGTGCCGATGATGGTCGA-G-----GCAC-GCACCAGGGGC-C-AT
65 CCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACCGCTCTGCACCA-AGGCTCGA-
* *
3527543 CTTCTGTC
128 CATGTGTC
* * ** * * * * * *
3527551 GATTGTGGTGGAGGCAAGAGCCCACACTAAGGATC-GCCTTATGCCGATGGTGCTCGAGGCAACC
1 GATGGTGGTCGAGGCAACCGCCCACACCAAGG-CCAG-CATGTGTCGATGGTGTTCGAGGCAACC
* * * * * ** * *
3527615 GCCCACACTAGGGGCCATATTCTACCGATGGTGGTCGAGGTAACTAC-CTGTACCAAGGC-CCAG
64 GCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACCGCTCTGCACCAAGGCTCGA-
3527678 CATGTGGT-
128 CATGT-GTC
* * * * * * * *
3527686 GATGGTGTTCAAGGCAACCACCCTCACCAAGGCCCAGCATGTATCGATGGTGTTTGACGCAATCG
1 GATGGTGGTCGAGGCAACCGCCCACACCAAGG-CCAGCATGTGTCGATGGTGTTCGAGGCAACCG
* * * * * * *
3527751 CCTGCACCAGGGGCCATCTTATGTCGATAGTGGTAGAGGTAACCGC-CTGCACCAAGGGTCGGC-
65 CCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACCGCTCTGCACCAAGGCTCGACA
3527814 TAGTG-C
130 T-GTGTC
* * * * * * * * **
3527820 TGATGGTGCTCGAGGTAACTGCCCGCATCAAGGCCTGACACGTGTCGATAGTGTTTAAGGCAACC
1 -GATGGTGGTCGAGGCAACCGCCCACACCAAGGCCAG-CATGTGTCGATGGTGTTCGAGGCAACC
** * * * * * * *
3527885 GCCCATACCAGGGGCTATCTTCTACCGATAGTGGTCGTGGCAACCG-TCTGCACCAAGGC-CCAG
64 GCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACCGCTCTGCACCAAGGCTCGA-
3527948 CATGTGTC
128 CATGTGTC
* * * ** * * * * * *
3527956 GATGGTGTTCGATGCAACTGCCCACACCCGGGGCCATCTTATGTCAATGGTAG-TCGAGGTAACA
1 GATGGTGGTCGAGGCAACCGCCCACA-CCAAGGCCAGCATGTGTCGATGGT-GTTCGAGGCAACC
* * ** * *
3528020 GCCTGCACCA-AGGCC-TGACAAGTGCCGATGGTGTTCGAGGTAACTGCTC-GCACCAAGGCTCG
64 GCCCGCACCAGGGGCCAT--CTTGTGCCGATGGTGGTCGAGGTAACCGCTCTGCACCAAGGCTCG
3528082 ACATGTGTC
127 ACATGTGTC
* * * * *
3528091 AATGGTGGTCGAGGTAACCGCCCACACCACAGCCCCGCATGTGTCGATGGTGTTCGATGCAACCG
1 GATGGTGGTCGAGGCAACCGCCCACACCA-AGGCCAGCATGTGTCGATGGTGTTCGAGGCAACCG
* * *
3528156 CCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCAAGGCAACCG-TAC-GCACCAAGGGTCGAC
65 CCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACCGCT-CTGCACCAAGGCTCGAC
* **
3528219 TTGTACC
129 ATGTGTC
** * * * * *
3528226 GATGGTGGTCGAGGCAACCGCCCGTACCAAGGGTC-GACATGTGCCGATGGTGATCGAGGTAATC
1 GATGGTGGTCGAGGCAACCGCCCACACCAA-GGCCAG-CATGTGTCGATGGTGTTCGAGGCAACC
** * *
3528290 GCTTGCACCA-GGGCCTAGCTTGTGCCGATGATGGTCGAGGTAA
64 GCCCGCACCAGGGGCC-ATCTTGTGCCGATGGTGGTCGAGGTAA
3528333 GTACCCATAC
Statistics
Matches: 1154, Mismatches: 375, Indels: 112
0.70 0.23 0.07
Matches are distributed among these distances:
128 3 0.00
129 84 0.07
130 5 0.00
133 4 0.00
134 120 0.10
135 905 0.78
136 32 0.03
137 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (135 bp):
GATGGTGGTCGAGGCAACCGCCCACACCAAGGCCAGCATGTGTCGATGGTGTTCGAGGCAACCGC
CCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACCGCTCTGCACCAAGGCTCGACAT
GTGTC
Found at i:3529437 original size:136 final size:136
Alignment explanation
Indices: 3529178--3529427 Score: 302
Period size: 136 Copynumber: 1.8 Consensus size: 136
3529168 AGTGGGATCG
* * * * * *
3529178 GCAGCACGTAGAGGGGGGCCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAA
1 GCAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATCCTGCCTCTCCGACCGACTGAA
* ** **
3529243 AACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGA
66 AACCCACACGCTCATTTCATGGGTTGACTTACACATACAAAGTTCATTCCTAGTCTAAGATTGGA
3529308 CTGACA
131 CTGACA
* ** * *
3529314 GCAGCACGCAGAGGGGGATCAGGCCGATCCTCGGCTTGTTCATCCTGCCTCTCCGACCGATTGAG
1 GCAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATCCTGCCTCTCCGACCGACTGAA
** * * * *
3529379 CGCTCGCACGCTTATTTTATGGGTTGACTTACACATACAAAGTTCATTC
66 AACCCACACGCTCATTTCATGGGTTGACTTACACATACAAAGTTCATTC
3529428 TCGGTCTAAG
Statistics
Matches: 92, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
136 92 1.00
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (136 bp):
GCAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATCCTGCCTCTCCGACCGACTGAA
AACCCACACGCTCATTTCATGGGTTGACTTACACATACAAAGTTCATTCCTAGTCTAAGATTGGA
CTGACA
Found at i:3538886 original size:26 final size:26
Alignment explanation
Indices: 3538857--3538907 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3538847 TAGACATACG
3538857 GAGTTCATTCCCAATCTAAGCATATC
1 GAGTTCATTCCCAATCTAAGCATATC
*
3538883 GAGTTCATTCCCAGTCTAAGCATAT
1 GAGTTCATTCCCAATCTAAGCATAT
3538908 GGACTGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
GAGTTCATTCCCAATCTAAGCATATC
Found at i:3539084 original size:26 final size:26
Alignment explanation
Indices: 3539048--3539100 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3539038 GTTGACTTAG
3539048 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
3539074 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
3539100 G
1 G
3539101 ATCGGACAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:3541867 original size:35 final size:35
Alignment explanation
Indices: 3541696--3547232 Score: 985
Period size: 35 Copynumber: 156.3 Consensus size: 35
3541686 GGGTATAGGT
* * * * * * *
3541696 ATTTAATCTCGGTCATTTTCAATTTCTAACCCACG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * *
3541731 GTTTAATCCTAATCATTTTCATTTTCTGACCCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * *
3541766 GTTTAATCCTAATCGTTTTCATTTTTTGACTCGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * *
3541801 AGTTAATCTGGATCATTTTTATTTTTTGACTTATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
**
3541836 ATTTAATCTTGATCATTTTCATTTTTTGACTTGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * **
3541871 ATTTAATTTTGGTCATTTT-A-TTTTTAATTTGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * *
3541904 TTTTAATCCTAATCATTTTCATTTTCTGACT-A-G
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * **
3541937 TAATTAAT-TCTGGTAATTTTCATTATTGTTTTTGTTTTC-TG
1 -ATTTAATCT-TGATCATTTTC---A-T-TTTTTG-ACTCATG
* * * *
3541978 A-CTGATGCTTTAATCTCAATTGTT-TTTTTTCTGACTTCATG
1 ATTTAAT-C-TTGA--TC-ATT-TTCATTTTT-TGAC-TCATG
* * *
3542019 ATTTTAATGTTGATCATTTTTATTTTTGTGACTTATG
1 A-TTTAATCTTGATCATTTTCATTTTT-TGACTCATG
* * * *
3542056 ATTTAATAC-TGATCATTTTTATCTTCTGACTTATG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* * * *
3542091 ATTTAATCTCGATCATTTTCATTTTCTAACCCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * *
3542126 GTTTAATCCT-AGTCGTTTTCATTTTTTGACCCATG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* * * * * * * **
3542161 GTTTAATCCTGGTCGTTTTTATTTTCTAACTTGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * * *
3542196 GTTAAATCCTGATCATTTTTATTTTCTAACTCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * *
3542231 ATTTAAT-ATCAGTCACTTTCATTTTTTGACTCATG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* * * **
3542266 GTTTAATTCCT-ATCATTTTCATTTTTTAACTTGTG
1 ATTTAA-TCTTGATCATTTTCATTTTTTGACTCATG
* * * * *
3542301 ATTTAAT-TCTGGTCATTTTTATTTCTCGACTCGTTG
1 ATTTAATCT-TGATCATTTTCATTTTTTGACTC-ATG
*** * *
3542337 -TTTAATAC-CCCTCATTTTCA-----TGA-TGCGTT
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACT-CATG
* *
3542366 ATTTAATCACTG-TCATTTTTATTTTTTGACTCATG
1 ATTTAATC-TTGATCATTTTCATTTTTTGACTCATG
* ** *
3542401 ATTTAATC-TCATTTGTTTTCTTTTTTTGACTCATG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* * * * *
3542436 GTATAATCCTGGTCATTTTTCATTTTTTGACTCATC
1 ATTTAATCTTGATCA-TTTTCATTTTTTGACTCATG
* * *
3542472 ATTTAATCTTGATTATTTTCATTTTCTGACTCGT-
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* ** *
3542506 AGTTTAATCATGATGGTTTTCATTTTTCTCG-CTCAGG
1 A-TTTAATCTTGATCATTTTCATTTTT-T-GACTCATG
* * * *
3542543 GTTTAGTC-TCAGTCATTTTTATTTTTTGACTCATG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* * * *
3542578 TTTTAATTTTGGTCGA-TTTCATTTTTTAACTCAT-
1 ATTTAATCTTGATC-ATTTTCATTTTTTGACTCATG
* * *
3542612 ATTTTAATCTCTG-TCATTTTTATTTTTTGACTCGTA
1 A-TTTAATCT-TGATCATTTTCATTTTTTGACTCATG
* * * * **
3542648 ATTTAAT-TTCAGTAATTTTCATTATCGTTTTCATTTTTTG
1 ATTTAATCTTGA-TCATTTTCA-T-T--TTTTGA-CTCATG
* ** * *
3542688 ACTCGTGGTTTAATTTCAATCATTTTCATTTTTTGACTTATG
1 A----T--TTAATCTT-GATCATTTTCATTTTTTGACTCATG
* * **
3542730 ATTTAATTTTGATCATTTTTATTTTTTTGACTTGTG
1 ATTTAATCTTGATCATTTTCA-TTTTTTGACTCATG
* ** * *
3542766 ATTTAATATTGATTGTTTTCATTTTCTAACTCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* ** * * * * *
3542801 ATTTAATC-TCAGTTGTTTTTAGTTTCT-AATCCACG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACT-CATG
* *
3542836 GTTTAATCTTGATCATTTTTCATTTTTTGAC-CTTG
1 ATTTAATCTTGATCA-TTTTCATTTTTTGACTCATG
* * **
3542871 GTTTAATCCT-ATCATTTTTCATTTTTTGACTTGTG
1 ATTTAATCTTGATCA-TTTTCATTTTTTGACTCATG
* * * *
3542906 ATATAATCTGGGTCATTTTTATTTTTTGACTCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * ** * * *
3542941 GTTTAATCCTGATTGTTTT--TGTTTTCATATCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGA-CTCATG
* *
3542975 ATTTAATCTCGATTGCA--TTCATTTTCTGACTCATG
1 ATTTAATCTTGA-T-CATTTTCATTTTTTGACTCATG
* ** **
3543010 GTTTAAT-TCCCATTGTTTTCATTTTTTGACTCATG
1 ATTTAATCT-TGATCATTTTCATTTTTTGACTCATG
* *
3543045 ATTTAAT-TCTGGTCATTTTTATTTCTTTGACTCATG
1 ATTTAATCT-TGATCATTTTCATTT-TTTGACTCATG
* *** * *
3543081 GTTTAATCCCCAT-AGTCTTCATTTTCTGAC-C-TG
1 ATTTAATCTTGATCA-TTTTCATTTTTTGACTCATG
* ** ** * *
3543114 TGTTTAATCCCGATTGTTTTTCATTTTCTAACT-AGTG
1 -ATTTAATCTTGA-TCATTTTCATTTTTTGACTCA-TG
* * * * *
3543151 GTTTCAT-TTTAGTCATTTTTATTTTTTGACTCGTG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* * * ** *
3543186 GTGTAATCCCTG-TTGTTTTAATTTTTTGACTCAT-
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
** * * * *
3543220 AGTTTAATCCCGATCGTTTTCAGTTTTAGACTCATT
1 A-TTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * *
3543256 ATTTCATGTTGGTCATTTTTATTTTTTGACTCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* *
3543291 ATTTAAGTCTAGAT-GTTTTCATTTTTTGACT-AGTG
1 ATTTAA-TCTTGATCATTTTCATTTTTTGACTCA-TG
* ** * ** *
3543326 GTTTAATC-CCAGTTATTTTCATTTTCGGACTCGTG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* ** * * **
3543361 ATTTAGT-TACAATCGTTTTTATTTCTTTGACTTGTG
1 ATTTAATCT-TGATCATTTTCATTT-TTTGACTCATG
** *
3543397 ATTTAATGCCAG-TCATTTTCATTTTTTCACTCATTG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCA-TG
* * * ** *
3543433 -TTTAGTTTCTGTTGTTTTTGC--TTTCTGACTCATG
1 ATTTAATCT-TGATCATTTT-CATTTTTTGACTCATG
* * **
3543467 GTTTAATCTCGATCATTTTCACTTTTTT-ACTTGTG
1 ATTTAATCTTGATCATTTTCA-TTTTTTGACTCATG
* ** ** * *
3543502 GTTTAATCCCCG-TTGTTTTACATTTTCTGACTTATG
1 ATTTAAT-CTTGATCATTTT-CATTTTTTGACTCATG
* * * *
3543538 CTTTAATCCCT-ATTATTTTCATTTTCTGA-TGCAT-
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACT-CATG
* * * * * *
3543572 -TGTGATTTTTAT--TTTTTATTTTCTGA-TGCATTGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACT-CA---TG
* * * **
3543607 ATTTTTAATCCCTG-TCATTTTTATTTTTTAACTTGTG
1 A--TTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* ** **
3543644 ATTTAATCCTGGCCATTTTCATTTTTTGACTTGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * * * *
3543679 GTATAAT-TGTGATCATTTTTTAGTTTCTAACTCCTCG
1 ATTTAATCT-TGATCA-TTTTCATTTTTTGACTCAT-G
*** * * *
3543716 -TTTAATCCCCAATCACTTTCATTGTCTGACTCATCG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCAT-G
* ** * *
3543752 -CTTAATCTT-AGTGGTTTTCATTTTCCTG-CTCAAG
1 ATTTAATCTTGA-TCATTTTCATTTT-TTGACTCATG
* * * * *
3543786 GTTTAGTCCT-AGTCATTTTCATTTTCTAACTCATG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* * *
3543821 CTTTAAT-TCCGATCATTTTCATTTTTTAACTCATG
1 ATTTAATCT-TGATCATTTTCATTTTTTGACTCATG
* * ** * * * *
3543856 CTTTCATCCCGATCATTTTCATTTTCTAACTCGTA
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* *
3543891 ATTTAAT-TTCGATAATTTTCATTATATTATCATTTTCTGACTTATG
1 ATTTAATCTT-G---A---TC---AT-TT-TCATTTTTTGACTCATG
* ** * *
3543937 GTTTAATCTCAATCGTTTTCATTTTTTGACTTATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
*
3543972 ATTTAAT-TTCGATCATTTTCATTATATTATCATTTTCTGACTTATG
1 ATTTAATCTT-GATCATTTTC--------AT--TTTT-TGACTCATG
* ** * *
3544018 GTTTAATCTCAATCGTTTTCATTTTTTGACTTATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * *
3544053 ATTTAAT-TTCGATCATTTTTATTTCTCTGAAAT-GTG
1 ATTTAATCTT-GATCATTTTCATTT-TTTG-ACTCATG
* *
3544089 ATTTAATATCGATCATTTTCATTTTTTGACTCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * *
3544124 ATTTAATCTCTGTTGC-TTTTCATTTTCTAACCCATG
1 ATTTAATCT-TGAT-CATTTTCATTTTTTGACTCATG
* * * * * *
3544160 GTTTAATCTCGGTCATTTTCATTTTCTAACCCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* **
3544195 ATTTAATCTTGGTTGTTTTCATTTTTTGACTCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * * * * **
3544230 ATTCAAT-TCAGGTCATTTTTATTTCTTAATTTGTG
1 ATTTAATCT-TGATCATTTTCATTTTTTGACTCATG
* * ** * *
3544265 GTTTGATCCCGATCATTTTTATTTTTTGACTCGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* *** *
3544300 ATTTAATCTCGATTGCTTTCATTTTTTGACTCGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
** * *
3544335 GCTTAATTCCT-ATCATTTTCATTTTTTGACTCGTG
1 ATTTAA-TCTTGATCATTTTCATTTTTTGACTCATG
* * *
3544370 ATTTAAT-TCTGGTCATTTTTATTTCTTTGACTCGTG
1 ATTTAATCT-TGATCATTTTCATTT-TTTGACTCATG
* * * ** * *
3544406 GTTGAATCCCT-ATTGTCTGCATTTTTTGACTCATG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* ** * * *
3544441 GTTTAATCACGATCATTTTTCATTTTCTAAAT-AGTG
1 ATTTAATCTTGATCA-TTTTCATTTTTTGACTCA-TG
* * * *
3544477 GTTTCATCTTGGTCATTTTCATTTTTTGACTTATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * * *
3544512 GTTTGATCCTG-TCATTTTAATTTTTTTGATTCGTG
1 ATTTAATCTTGATCATTTTCA-TTTTTTGACTCATG
* * * ** * **
3544547 GTATAATCCTT-ATCGTTTTCA-AATTAGACTCGCG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* * * *
3544581 ATTTAAT-TTCAGTCATTTTTATTTTTTTGACTCGTA
1 ATTTAATCTTGA-TCATTTTCA-TTTTTTGACTCATG
*
3544617 ATTTGAT-TTCGATCATTTTCATTTTTTGACT-AGTG
1 ATTTAATCTT-GATCATTTTCATTTTTTGACTCA-TG
* ** * * *
3544652 GTTTAATCTCAATGATTTTCATTTTTTGACTCTTA
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * *
3544687 ATTTAGT-TTCAATCATTTTTATTTCTTTGACTCATG
1 ATTTAATCTT-GATCATTTTCATTT-TTTGACTCATG
** * *
3544723 ATTTAATGCCAG-TTATTTTCATTTTTTTACTCATG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* ** * *
3544758 ATTTAATTTTGA-CGATTTTTGTTTTCTAAC-CATG
1 ATTTAATCTTGATC-ATTTTCATTTTTTGACTCATG
* **
3544792 CTTTAATCTTTG-TCATTTTCATTTTTTGACTTGTG
1 ATTTAATC-TTGATCATTTTCATTTTTTGACTCATG
* * * **
3544827 GTTTAATCCTGGTGGTTTTCATTTTTCTCG-CTCA-G
1 ATTTAATCTTGATCATTTTCATTTTT-T-GACTCATG
* ** * * * *
3544862 AGTTTAGTC-CCAGTCATTTTTACTTTCTGACTCGTG
1 A-TTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* * * *
3544898 TTTTAAT-TTCGAT--TGTTTCA-----TGACACGTT
1 ATTTAATCTT-GATCAT-TTTCATTTTTTGACTCATG
* * *
3544927 ATTTAATACATG-TCTTTTTTATTTTTTGACTCATG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* *
3544962 ATTTAATCTCGTTCA-TTT--TTTTTT-ACTCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* ** *
3544993 GTACAAT-TCTGATCATTTTTCATTTTTTGACTCATC
1 ATTTAATCT-TGATCA-TTTTCATTTTTTGACTCATG
* *
3545029 ATTTAATCTCGAT-AGTTTTCATTTTTTGACTCTTG
1 ATTTAATCTTGATCA-TTTTCATTTTTTGACTCATG
* * ** * *
3545064 GTTTAGTCTT-AGTGGTTTTCATTTTTCTCG-CTTAAG
1 ATTTAATCTTGA-TCATTTTCATTTTT-T-GACTCATG
* * ** * * *
3545100 GTTTAGTC-CCAGCCATTTTTATTTTTTGACTCGTG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* * * * *
3545135 CTTTAATTCTAG-TCGTTTTCATTTTTT-AAT-TTG
1 ATTTAA-TCTTGATCATTTTCATTTTTTGACTCATG
* * *
3545168 TATTTTAGTCTCGATCATTTTCATTTTCTGACTCGTAATTTAG
1 -A-TTTAATCTTGATCATTTTCATTTTTTGACTC---A--T-G
* * * * *
3545211 TTTTGGTAATTTTCATCATCGTTTTCATTTTTTGACTCGTG
1 -ATT--TAATCTTGATCAT--TTTC-ATTTTTTGACTCATG
* * * *
3545252 GTTTAAAT-TTGATCGTTTTTATTTTCTGACTCATG
1 ATTT-AATCTTGATCATTTTCATTTTTTGACTCATG
* * * **
3545287 ATTTAATTTTAATCATTTTTATTTTTTGGACTTGTG
1 ATTTAATCTTGATCATTTTCATTTTTT-GACTCATG
* * *
3545323 ATTTAATATTGATCGTTTTCA-TTTTCGAACTCATG
1 ATTTAATCTTGATCATTTTCATTTTTTG-ACTCATG
* * * *
3545358 ATTTAATCTCAGTTGC--TTTCATTCTCTGACTCATG
1 ATTTAATCT-TGAT-CATTTTCATTTTTTGACTCATG
** ** *
3545393 GCTTAAT-TCCCATCATTTTCATTTTCTGACTCATG
1 ATTTAATCT-TGATCATTTTCATTTTTTGACTCATG
* * * *
3545428 ATTTAAT-TCTGGTTATTTTTATTTCTCTGACTCATG
1 ATTTAATCT-TGATCATTTTCATTT-TTTGACTCATG
* * ** *
3545464 GTTTAATCCCTG-TTGTTTTCATTTTTTAACTCATG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* * * * * *
3545499 GTTTAATCCTAATCATTTTTCATTTTCTAACT-AGTC
1 ATTTAATCTTGATCA-TTTTCATTTTTTGACTCA-TG
* * * * * **
3545535 ATTTCATCTCGGTCATTTTCATTTTCTGAGTTGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * *
3545570 GTTTAATCCCTG-TCATTTTAATTTTTTGATTCGTG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* * *** * * * **
3545605 GTATAATCCCAATCGTTTTCAATTTTAGACTTGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
*
3545640 ATTTAAT-TTCGATCATTTTTATTTTTTGACTCATG
1 ATTTAATCTT-GATCATTTTCATTTTTTGACTCATG
*
3545675 ATTTAAT-TTCGATCATTTTCATTTTTTGACTAATG
1 ATTTAATCTT-GATCATTTTCATTTTTTGACTCATG
* * *
3545710 GTTTAATCTTGATGATTTTCATTTTTTGACTCGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * *
3545745 ATTTAGT-TTCGATCATTTTTATTTCTTGGACTTATG
1 ATTTAATCTT-GATCATTTTCATTT-TTTGACTCATG
* *
3545781 ATTTAGTGC-TAATCATTTTCATTTTTTGACTCATG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* * ** *
3545816 ATTTAATTTTGGTTGTTTTCATTTTTTGACTCGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * *
3545851 CTTTAATCTCTG-TCATTTTCACTTTTTAACTTATG
1 ATTTAATCT-TGATCATTTTCATTTTTTGACTCATG
* * ** * *
3545886 GTTTAATCCCTG-TTGTTTTACATTTTCTGACTCGTG
1 ATTTAAT-CTTGATCATTTT-CATTTTTTGACTCATG
* *
3545922 CTTTAATCCTT-ATCGTTTTCA--TTTT---T--TG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* * ** *
3545950 -TTTAATCCTTG-TCATTTTTATTTTTTGATTTGTA
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* * * *
3545984 ATTTAATCCTGGTCATTTTCATTTTTT-AATGCAAG
1 ATTTAATCTTGATCATTTTCATTTTTTGACT-CATG
* * * * ** ** *
3546019 GTATAATCCTGGTTGTTTTTCATTTTTTGACTTGTC
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* *** *
3546055 ATTTTAATCCTGATTGCTTTCATTTTCTGACTCATG
1 A-TTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * ** * * * *
3546091 GTTTAATCCT-AGTGGTTTTTATTTTCTCACTCAGG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* * ** * *
3546126 GTTTAGTC-CCAGTCTTTTTCATTTTTTGACTCGTG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* * * * * **
3546161 CTTTAAT-TATGGTCGTTTTAATTTTTTTAACTTGTG
1 ATTTAATCT-TGATCATTTTCA-TTTTTTGACTCATG
* ** * *
3546197 TTTTAATCTCAATCATTTTCATTTTTTGACTCGTA
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * *
3546232 ATTTAAT-TTCAGTAATTTTCATTATAATTTTTATTTTC-TA
1 ATTTAATCTTGA-TCATTTTCA-T-T--TTTTGA--CTCATG
** * * *
3546272 ACTTGTGGT-TTAATCTTGTTCATTTTCATTTTTTGACTCGTG
1 A-TT-TAATCTTGATC--ATT--TT--CATTTTTTGACTCATG
* *
3546314 ATTTAATTTTGATCATTTTTATTTTTCTGACTCATG
1 ATTTAATCTTGATCATTTTCATTTTT-TGACTCATG
* * * * *
3546350 ATTTAATC-TCAGTCATTTTCATTTTCTAACCCA-C
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
*** *
3546384 AGTTTAATCCCAAT--TGTTTCATTTTCTGACTCATG
1 A-TTTAATCTTGATCAT-TTTCATTTTTTGACTCATG
** * * *
3546419 ATTTAATC-CAAGTCATTTTTATTTTCTAACTCATG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* ** * *
3546454 GTTTAATGC-CAATCATTTTTATTTTTTGACTTATG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* ** * *
3546489 ATTTAATCTCGATCGCTTTCATTTTCTAACTCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* ** *
3546524 GTTTAAT-TCCCATCATTTTTCATTTTTTGACTCGT-
1 ATTTAATCT-TGATCA-TTTTCATTTTTTGACTCATG
* * * *
3546559 AATTAATTTTTAGTCATTTTTATTTCTTTGACTCATG
1 ATTTAATCTTGA-TCATTTTCATTT-TTTGACTCATG
* * * ** * *
3546596 GTTTAATCCTCATTGTCTTCATTTTCTGACTCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * *
3546631 GTTTAATCTCG-GCAGGTCTTCATTTTCTGACTCATG
1 ATTTAATCTTGATCA--TTTTCATTTTTTGACTCATG
* * * * *
3546667 GTTTAATCTCG-GCAGGTCTTCATTTTCTGACT-A-G
1 ATTTAATCTTGATCA--TTTTCATTTTTTGACTCATG
* * * ** * **
3546701 -TTTCATCTCGGTTGTTTTCATTGTTTGACTTGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * *
3546735 GTTTAATCCCT-ATCATTTTAAATTTCT-ACCTCATG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGA-CTCATG
* * ** * *
3546770 ATTTGATCCTGATTGTTTTCAGTTTTAGACTCATG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * ** *
3546805 ATTTAATTTTGATCA-TTT--TTTTCTAACTTGTA
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* *
3546837 ATTTAAT-TTCAGTCGTTTTCATTTTTTGACT-AGTG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCA-TG
* * * **
3546872 GTTTAATCTTGGTCATTTTCATTTTTTCACTTGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * ** * * *
3546907 ATTTAGT-TTCAGTTGTTTTTATTTCTTTGGCTCATA
1 ATTTAATCTTGA-TCATTTTCATTT-TTTGACTCATG
** *
3546943 ATTTAAAGTTGATCATTTTCATTTTTTGACTCATC
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * *
3546978 ATTTAAT-TCTGGTCATTTTCATTTTCTGAATCGTG
1 ATTTAATCT-TGATCATTTTCATTTTTTGACTCATG
* ** *
3547013 CTTTAATCTT-AGTCATTTTCACATTTTGACTTATG
1 ATTTAATCTTGA-TCATTTTCATTTTTTGACTCATG
* * * * * *
3547048 GTTTAGTCCTCATTC-TTTTACATTTTCTGACT-GTG
1 ATTTAATCTTGA-TCATTTT-CATTTTTTGACTCATG
* * *
3547083 CTTTAATCCCT-AT-AGTTTTCATTTTCTGA-TGCATTG
1 ATTTAAT-CTTGATCA-TTTTCATTTTTTGACT-CA-TG
* * *
3547119 -TTTAATCCCT-ATCATTTTTATTTTTTGACTCAAG
1 ATTTAAT-CTTGATCATTTTCATTTTTTGACTCATG
* * * *
3547153 ATTTAATCCTGGTCACTTTCATTTTTTGACTCGTG
1 ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
* * * * *
3547188 GTATAATCCTAATCATTTTTCATTTATTGACTCATTG
1 ATTTAATCTTGATCA-TTTTCATTTTTTGACTCA-TG
3547225 -TTTAATCT
1 ATTTAATCT
3547233 CGGTTGCTTT
Statistics
Matches: 4030, Mismatches: 1078, Indels: 787
0.68 0.18 0.13
Matches are distributed among these distances:
27 17 0.00
28 2 0.00
29 21 0.01
30 24 0.01
31 37 0.01
32 39 0.01
33 72 0.02
34 261 0.06
35 2344 0.58
36 895 0.22
37 61 0.02
38 29 0.01
39 30 0.01
40 31 0.01
41 26 0.01
42 17 0.00
43 21 0.01
44 15 0.00
45 12 0.00
46 50 0.01
47 25 0.01
48 1 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.53
Consensus pattern (35 bp):
ATTTAATCTTGATCATTTTCATTTTTTGACTCATG
Found at i:3542514 original size:71 final size:70
Alignment explanation
Indices: 3542367--3542515 Score: 185
Period size: 71 Copynumber: 2.1 Consensus size: 70
3542357 TGATGCGTTA
* * * *
3542367 TTTAATCACTGTCATTTTTATTTTTTGACTCATGATTTAATCTCATTTGTTTTCTTTTTTTGACT
1 TTTAATCACTGTCATTTTTATTTTTTGACTCATCATTTAATCTCATTTATTTTCATTTTCTGACT
*
3542432 CATGG
66 CATAG
* *
3542437 TATAATC-CTGGTCATTTTTCATTTTTTGACTCATCATTTAATCTTGA-TTATTTTCATTTTCTG
1 TTTAATCACT-GTCATTTTT-ATTTTTTGACTCATCATTTAATC-TCATTTATTTTCATTTTCTG
*
3542500 ACTCGTAG
63 ACTCATAG
3542508 TTTAATCA
1 TTTAATCA
3542516 TGATGGTTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
69 2 0.03
70 15 0.23
71 47 0.71
72 2 0.03
ACGTcount: A:0.21, C:0.15, G:0.09, T:0.54
Consensus pattern (70 bp):
TTTAATCACTGTCATTTTTATTTTTTGACTCATCATTTAATCTCATTTATTTTCATTTTCTGACT
CATAG
Found at i:3542583 original size:71 final size:70
Alignment explanation
Indices: 3542386--3542654 Score: 163
Period size: 71 Copynumber: 3.8 Consensus size: 70
3542376 TGTCATTTTT
* * ** * * * *
3542386 ATTTTTTGACTCATGA-TTTAATCTCATTTGTTTTCT-TTTTTTGACTCATGGTATAATCCTGGT
1 ATTTTTTAACTCA-GAGTTTAATCTCAGTCATTTT-TATTTTTTGACTCATAGTTTAATCATGAT
3542449 C-ATTTTTC
64 CGA--TTTC
* * * * * * *
3542457 ATTTTTTGACTCATCA-TTTAATCT-TGATTATTTTCATTTTCTGACTCGTAGTTTAATCATGAT
1 ATTTTTTAACTCA-GAGTTTAATCTCAG-TCATTTTTATTTTTTGACTCATAGTTTAATCATGAT
* *
3542520 GGTTTTC
64 CGATTTC
** * * ** *
3542527 ATTTTTCTCGCTCAGGGTTTAGTCTCAGTCATTTTTATTTTTTGACTCAT-GTTTTAATTTTGGT
1 ATTTTT-TAACTCAGAGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAG-TTTAATCATGAT
3542591 CGATTTC
64 CGATTTC
* * * * *
3542598 ATTTTTTAACTCATATTTTAATCTCTGTCATTTTTATTTTTTGACTCGTAATTTAAT
1 ATTTTTTAACTCAGAGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAAT
3542655 TTCAGTAATT
Statistics
Matches: 153, Mismatches: 37, Indels: 17
0.74 0.18 0.08
Matches are distributed among these distances:
70 52 0.34
71 100 0.65
72 1 0.01
ACGTcount: A:0.20, C:0.14, G:0.11, T:0.55
Consensus pattern (70 bp):
ATTTTTTAACTCAGAGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATCATGATCG
ATTTC
Found at i:3542637 original size:106 final size:107
Alignment explanation
Indices: 3542447--3542638 Score: 228
Period size: 106 Copynumber: 1.8 Consensus size: 107
3542437 TATAATCCTG
* * *
3542447 GTCATTTTTCATTTTTTGACTCATCATTTAATCTTGATTATTTTCATTTTCTGACTCGTAGTTTA
1 GTCATTTTTCATTTTTTGACTCATCATTTAATCTTGATGATTTTCATTTTCTAACTCATAGTTTA
**
3542512 ATCATGATGGTTTTCATTTTTCTCGCTCAGGGTTTAGTCTCA
66 ATCATGATCATTTTCATTTTTCTCGCTCAGGGTTTAGTCTCA
** * * * *
3542554 GTCATTTTT-ATTTTTTGACTCATGTTTTAATTTTGGTCGA-TTTCATTTTTTAACTCATATTTT
1 GTCATTTTTCATTTTTTGACTCATCATTTAATCTTGAT-GATTTTCATTTTCTAACTCATAGTTT
* *
3542617 AATCTCTG-TCATTTTTATTTTT
65 AATC-ATGATCATTTTCATTTTT
3542639 TGACTCGTAA
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
106 58 0.83
107 12 0.17
ACGTcount: A:0.19, C:0.15, G:0.11, T:0.56
Consensus pattern (107 bp):
GTCATTTTTCATTTTTTGACTCATCATTTAATCTTGATGATTTTCATTTTCTAACTCATAGTTTA
ATCATGATCATTTTCATTTTTCTCGCTCAGGGTTTAGTCTCA
Found at i:3542684 original size:47 final size:47
Alignment explanation
Indices: 3542628--3542717 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 47
3542618 ATCTCTGTCA
* *
3542628 TTTTTATTTTTTGACTCGTAATTTAATTTCAGTAATTTTCATTATCG
1 TTTTCATTTTTTGACTCGTAATTTAATTTCAATAATTTTCATTATCG
** *
3542675 TTTTCATTTTTTGACTCGTGGTTTAATTTCAATCATTTTCATT
1 TTTTCATTTTTTGACTCGTAATTTAATTTCAATAATTTTCATT
3542718 TTTTGACTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (47 bp):
TTTTCATTTTTTGACTCGTAATTTAATTTCAATAATTTTCATTATCG
Found at i:3542702 original size:117 final size:118
Alignment explanation
Indices: 3542558--3542772 Score: 276
Period size: 117 Copynumber: 1.8 Consensus size: 118
3542548 GTCTCAGTCA
* * ***
3542558 TTTTTATTTTTTGACTCATGTTTTAATTTTGGTCGA-TTTCATTTTTTAACTCAT-ATTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATTTCAATC-ATTTTCATTTTTTAACTCATGA-TTTAAT-
3542621 TCTG-TCATTTTTA-TTTTTTGACTCGTAATTTAATTTCAGTAATTTTCATTATCG
63 TCTGATCATTTTTATTTTTTTGACTCGTAATTTAATTTCAGTAATTTTCATTATCG
* * * *
3542675 TTTTCATTTTTTGACTCGTGGTTTAATTTCAATCATTTTCATTTTTTGACTTATGATTTAATTTT
1 TTTTCATTTTTTGACTCATGGTTTAATTTCAATCATTTTCATTTTTTAACTCATGATTTAATTCT
* *
3542740 GATCATTTTTATTTTTTTGACTTGTGATTTAAT
66 GATCATTTTTATTTTTTTGACTCGTAATTTAAT
3542773 ATTGATTGTT
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
116 4 0.05
117 59 0.71
118 20 0.24
ACGTcount: A:0.21, C:0.11, G:0.09, T:0.59
Consensus pattern (118 bp):
TTTTCATTTTTTGACTCATGGTTTAATTTCAATCATTTTCATTTTTTAACTCATGATTTAATTCT
GATCATTTTTATTTTTTTGACTCGTAATTTAATTTCAGTAATTTTCATTATCG
Found at i:3542741 original size:18 final size:18
Alignment explanation
Indices: 3542718--3542777 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
3542708 CATTTTCATT
3542718 TTTTGACTTATGATTTAA
1 TTTTGACTTATGATTTAA
* *
3542736 TTTTGATCATTTTTATTT--
1 TTTTGA-C-TTATGATTTAA
*
3542754 TTTTGACTTGTGATTTAA
1 TTTTGACTTATGATTTAA
*
3542772 TATTGA
1 TTTTGA
3542778 TTGTTTTCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 7 0.21
17 1 0.03
18 17 0.52
19 1 0.03
20 7 0.21
ACGTcount: A:0.23, C:0.05, G:0.12, T:0.60
Consensus pattern (18 bp):
TTTTGACTTATGATTTAA
Found at i:3543437 original size:71 final size:68
Alignment explanation
Indices: 3543267--3543439 Score: 186
Period size: 71 Copynumber: 2.5 Consensus size: 68
3543257 TTTCATGTTG
* * *
3543267 GTCATTTTTATTTTTTGACTCATGATTTAAGTCTAGATGTTTTCATTTTTTGACTAGTGGTTTAA
1 GTCATTTTCATTTTTTGACTCATGATTT-AGT-TAAATGTTTTCATTTTTTGACTAGTGATTTAA
3543332 TCCCA
64 TCCCA
* ** * * *
3543337 GTTATTTTCATTTTCGGACTCGTGATTTAGTTACAATCGTTTTTATTTCTTTGACTTGTGATTTA
1 GTCATTTTCATTTTTTGACTCATGATTTAGTTA-AAT-GTTTTCATTT-TTTGACTAGTGATTTA
*
3543402 ATGCCA
63 ATCCCA
*
3543408 GTCATTTTCATTTTTTCACTCATTG-TTTAGTT
1 GTCATTTTCATTTTTTGACTCA-TGATTTAGTT
3543440 TCTGTTGTTT
Statistics
Matches: 84, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
68 2 0.02
69 5 0.06
70 32 0.38
71 43 0.51
72 2 0.02
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.53
Consensus pattern (68 bp):
GTCATTTTCATTTTTTGACTCATGATTTAGTTAAATGTTTTCATTTTTTGACTAGTGATTTAATC
CCA
Found at i:3543595 original size:31 final size:33
Alignment explanation
Indices: 3543548--3543613 Score: 118
Period size: 31 Copynumber: 2.1 Consensus size: 33
3543538 CTTTAATCCC
3543548 TATTATTTTCATTTTCTGATGCATTGTGATTTT
1 TATTATTTTCATTTTCTGATGCATTGTGATTTT
3543581 TATT-TTTT-ATTTTCTGATGCATTGTGATTTT
1 TATTATTTTCATTTTCTGATGCATTGTGATTTT
3543612 TA
1 TA
3543614 ATCCCTGTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 25 0.76
32 4 0.12
33 4 0.12
ACGTcount: A:0.18, C:0.08, G:0.12, T:0.62
Consensus pattern (33 bp):
TATTATTTTCATTTTCTGATGCATTGTGATTTT
Found at i:3543958 original size:81 final size:81
Alignment explanation
Indices: 3543891--3544071 Score: 353
Period size: 81 Copynumber: 2.2 Consensus size: 81
3543881 CTAACTCGTA
*
3543891 ATTTAATTTCGATAATTTTCATTATATTATCATTTTCTGACTTATGGTTTAATCTCAATCGTTTT
1 ATTTAATTTCGATCATTTTCATTATATTATCATTTTCTGACTTATGGTTTAATCTCAATCGTTTT
3543956 CATTTTTTGACTTATG
66 CATTTTTTGACTTATG
3543972 ATTTAATTTCGATCATTTTCATTATATTATCATTTTCTGACTTATGGTTTAATCTCAATCGTTTT
1 ATTTAATTTCGATCATTTTCATTATATTATCATTTTCTGACTTATGGTTTAATCTCAATCGTTTT
3544037 CATTTTTTGACTTATG
66 CATTTTTTGACTTATG
3544053 ATTTAATTTCGATCATTTT
1 ATTTAATTTCGATCATTTT
3544072 TATTTCTCTG
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 99 1.00
ACGTcount: A:0.24, C:0.13, G:0.08, T:0.55
Consensus pattern (81 bp):
ATTTAATTTCGATCATTTTCATTATATTATCATTTTCTGACTTATGGTTTAATCTCAATCGTTTT
CATTTTTTGACTTATG
Found at i:3544165 original size:71 final size:69
Alignment explanation
Indices: 3544001--3544219 Score: 205
Period size: 71 Copynumber: 3.1 Consensus size: 69
3543991 CATTATATTA
* * * * * *
3544001 TCATTTTCTGACTTATGGTTTAATCTCAATCGTTTTCATTTTTTGACTTATGATTTAATTTC-GA
1 TCATTTTCTAAC--ATGGTTTAATCTCGATCATTTTCATTTTTTGACTCATGATTTAATCTCTGT
3544065 T-CATTT
64 TGC-TTT
* *
3544071 TTATTTCTCTGAA-ATGTGATTTAATATCGATCATTTTCATTTTTTGACTCATGATTTAATCTCT
1 TCATTT-TCT-AACATG-G-TTTAATCTCGATCATTTTCATTTTTTGACTCATGATTTAATCTCT
3544135 GTTGCTTT
62 GTTGCTTT
* * * *
3544143 TCATTTTCTAACCCATGGTTTAATCTCGGTCATTTTCATTTTCTAACCCATGATTTAATCT-TGG
1 TCATTTTCTAA--CATGGTTTAATCTCGATCATTTTCATTTTTTGACTCATGATTTAATCTCT-G
3544207 TTG-TTT
63 TTGCTTT
3544213 TCATTTT
1 TCATTTT
3544220 TTGACTCATG
Statistics
Matches: 125, Mismatches: 14, Indels: 20
0.79 0.09 0.13
Matches are distributed among these distances:
69 3 0.02
70 19 0.15
71 87 0.70
72 12 0.10
73 4 0.03
ACGTcount: A:0.21, C:0.16, G:0.11, T:0.53
Consensus pattern (69 bp):
TCATTTTCTAACATGGTTTAATCTCGATCATTTTCATTTTTTGACTCATGATTTAATCTCTGTTG
CTTT
Found at i:3544514 original size:106 final size:107
Alignment explanation
Indices: 3544214--3544507 Score: 280
Period size: 106 Copynumber: 2.8 Consensus size: 107
3544204 TGGTTGTTTT
* * * * * * **
3544214 CATTTTTTGACTCATGATTCAATTCA-GGTCATTTTT-A-TTTCTTAATTTGTGGTTTGATCCCG
1 CATTTTTTGACTCATGGTTTAATTCACGATCATTTTTCATTTTC-TAAATAGTGGTTTAATCTTG
* * * * *
3544276 ATCATTTTTATTTTTTGACTCGTGATTTAATCTCGATTGCTTT
65 GTCATTTTTATTTTTTGACTCGTGGTTGAATCCCGATTGCTTG
* * * * * * * *
3544319 CATTTTTTGACTCGTGGCTTAATTC-CTATCA-TTTTCATTTTTTGACTCGTGATTTAAT-TCTG
1 CATTTTTTGACTCATGGTTTAATTCACGATCATTTTTCATTTTCTAAATAGTGGTTTAATCT-TG
*
3544381 GTCATTTTTATTTCTTTGACTCGTGGTTGAATCCCTATTG-TCTG
65 GTCATTTTTATTT-TTTGACTCGTGGTTGAATCCCGATTGCT-TG
*
3544425 CATTTTTTGACTCATGGTTTAA-TCACGATCATTTTTCATTTTCTAAATAGTGGTTTCATCTTGG
1 CATTTTTTGACTCATGGTTTAATTCACGATCATTTTTCATTTTCTAAATAGTGGTTTAATCTTGG
*
3544489 TCATTTTCATTTTTTGACT
66 TCATTTTTATTTTTTGACT
3544508 TATGGTTTGA
Statistics
Matches: 150, Mismatches: 30, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
104 4 0.03
105 52 0.35
106 58 0.39
107 35 0.23
108 1 0.01
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.52
Consensus pattern (107 bp):
CATTTTTTGACTCATGGTTTAATTCACGATCATTTTTCATTTTCTAAATAGTGGTTTAATCTTGG
TCATTTTTATTTTTTGACTCGTGGTTGAATCCCGATTGCTTG
Found at i:3544728 original size:71 final size:70
Alignment explanation
Indices: 3544580--3544754 Score: 194
Period size: 71 Copynumber: 2.5 Consensus size: 70
3544570 TTAGACTCGC
* * *
3544580 GATTTAATTTCAGTCATTTTTATTTTTTTGACTCGTAATTTGATTTCGATCATTTTCATTTTTTG
1 GATTTAATCTCAGTCATTTTCA-TTTTTTGACTCGTAATTTGATTTCAATCATTTTCATTTTTTG
3544645 ACTAGT
65 ACTAGT
* * * * *
3544651 GGTTTAATCTCAATGATTTTCATTTTTTGACTCTTAATTT-AGTTTCAATCATTTTTATTTCTTT
1 GATTTAATCTCAGTCATTTTCATTTTTTGACTCGTAATTTGA-TTTCAATCATTTTCATTT-TTT
3544715 GACTCA-T
64 GACT-AGT
* *
3544722 GATTTAATGC-CAGTTATTTTCATTTTTTTACTC
1 GATTTAAT-CTCAGTCATTTTCATTTTTTGACTC
3544755 ATGATTTAAT
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
69 1 0.01
70 33 0.38
71 52 0.59
72 2 0.02
ACGTcount: A:0.22, C:0.13, G:0.10, T:0.55
Consensus pattern (70 bp):
GATTTAATCTCAGTCATTTTCATTTTTTGACTCGTAATTTGATTTCAATCATTTTCATTTTTTGA
CTAGT
Found at i:3544776 original size:71 final size:69
Alignment explanation
Indices: 3544580--3544818 Score: 187
Period size: 71 Copynumber: 3.4 Consensus size: 69
3544570 TTAGACTCGC
* * * * *
3544580 GATTTAATTTCAGTCATTTTTATTTTTTTGACTCGTAATTTGATTTCGATCATTTTCATTTTTTG
1 GATTTAA-TCCAGTCATTTTCATTTTTTT-ACTCATAATTTAATTTCGATCATTTTTATTTTTTG
3544645 ACTAGT
64 ACTAGT
* * * * * * *
3544651 GGTTTAATCTCAATGATTTTCATTTTTTGACTCTTAATTTAGTTTCAATCATTTTTATTTCTTTG
1 GATTTAATC-CAGTCATTTTCATTTTTTTACTCATAATTTAATTTCGATCATTTTTATTT-TTTG
3544716 ACTCA-T
64 ACT-AGT
* * * * * *
3544722 GATTTAATGCCAGTTATTTTCATTTTTTTACTCATGATTTAATTTTGA-CGATTTTTGTTTTCTA
1 GATTTAAT-CCAGTCATTTTCATTTTTTTACTCATAATTTAATTTCGATC-ATTTTTATTTTTTG
*
3544786 ACCA-T
64 ACTAGT
* **
3544791 GCTTTAATCTTTGTCATTTTCATTTTTT
1 GATTTAATC-CAGTCATTTTCATTTTTT
3544819 GACTTGTGGT
Statistics
Matches: 134, Mismatches: 28, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
68 1 0.01
69 24 0.18
70 32 0.24
71 75 0.56
72 2 0.01
ACGTcount: A:0.21, C:0.13, G:0.10, T:0.56
Consensus pattern (69 bp):
GATTTAATCCAGTCATTTTCATTTTTTTACTCATAATTTAATTTCGATCATTTTTATTTTTTGAC
TAGT
Found at i:3545335 original size:71 final size:72
Alignment explanation
Indices: 3545217--3545364 Score: 196
Period size: 71 Copynumber: 2.1 Consensus size: 72
3545207 TTAGTTTTGG
* * *
3545217 TAATTTTCATCATCGTTTTCATTTTTTGACTCGTGGTTTAAATTTGATCGTTTTTATTTTCTG-A
1 TAATTTTAATCATC-TTTTCATTTTTTGACTCGTGATTTAAATTTGATCGTTTTCATTTTC-GAA
3545281 CTCATGATT
64 CTCATGATT
*
3545290 TAATTTTAATCAT-TTTT-ATTTTTTGGACTTGTGATTT-AATATTGATCGTTTTCATTTTCGAA
1 TAATTTTAATCATCTTTTCATTTTTT-GACTCGTGATTTAAAT-TTGATCGTTTTCATTTTCGAA
3545352 CTCATGATT
64 CTCATGATT
3545361 TAAT
1 TAAT
3545365 CTCAGTTGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
70 11 0.16
71 45 0.66
73 12 0.18
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.55
Consensus pattern (72 bp):
TAATTTTAATCATCTTTTCATTTTTTGACTCGTGATTTAAATTTGATCGTTTTCATTTTCGAACT
CATGATT
Found at i:3545483 original size:71 final size:71
Alignment explanation
Indices: 3545264--3545523 Score: 208
Period size: 71 Copynumber: 3.7 Consensus size: 71
3545254 TTAAATTTGA
* * * * * ** *
3545264 TCGTTTTTATTTTCTGACTCATGATTTAATTTTAATCATTTTTATTT-TTTGGACTTGTGATTTA
1 TCGTTTTCATTTTCTGACTCATGATTTAATTCTAGTTATTTTTATTTCTCT-GACTCATGGTTTA
**
3545328 AT-ATTG
65 ATCCCTG
** * *
3545334 ATCGTTTTCATTTTC-GAACTCATGATTTAA-TCTCAGTTGCTTTCA-TTCTCTGACTCATGGCT
1 -TCGTTTTCATTTTCTG-ACTCATGATTTAATTCT-AGTTATTTTTATTTCTCTGACTCATGGTT
*
3545396 TAATTCCC-A
63 TAA-TCCCTG
* *
3545405 TCATTTTCATTTTCTGACTCATGATTTAATTCTGGTTATTTTTATTTCTCTGACTCATGGTTTAA
1 TCGTTTTCATTTTCTGACTCATGATTTAATTCTAGTTATTTTTATTTCTCTGACTCATGGTTTAA
3545470 TCCCTG
66 TCCCTG
* * * * * * *
3545476 TTGTTTTCATTTTTTAACTCATGGTTTAATCCTAATCATTTTTCATTT
1 TCGTTTTCATTTTCTGACTCATGATTTAATTCTAGTTATTTTT-ATTT
3545524 TCTAACTAGT
Statistics
Matches: 148, Mismatches: 31, Indels: 19
0.75 0.16 0.10
Matches are distributed among these distances:
70 52 0.35
71 92 0.62
72 4 0.03
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.53
Consensus pattern (71 bp):
TCGTTTTCATTTTCTGACTCATGATTTAATTCTAGTTATTTTTATTTCTCTGACTCATGGTTTAA
TCCCTG
Found at i:3545563 original size:106 final size:104
Alignment explanation
Indices: 3545267--3547386 Score: 442
Period size: 106 Copynumber: 20.1 Consensus size: 104
3545257 AATTTGATCG
* * * ** * * * *
3545267 TTTTTATTTTCTGACTCATGATTTAATTTTAATCATTTTTATTTTTTGGACTTGTGATTTAATAT
1 TTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTCATTTTCT-AACTAGTGATTTAAT-T
* * * * * **
3545332 TGATCGTTTTCATTTTC-GAACTCATGATTTAATCTCAGTTG
64 CGGTCATTTTCATTTTCTG-ACTCATGATTTAATCCCTGTCA
* * * * * *
3545373 CTTTCATTCTCTGACTCATGGCTTAATTCC-CATCATTTTCATTTTCTGACTCA-TGATTTAATT
1 TTTTCATTTTTTGACTCATGGTTTAA-TCCTAATCATTTTCATTTTCTAACT-AGTGATTTAATT
* * * **
3545436 CTGGTTATTTTTATTTCTCTGACTCATGGTTTAATCCCTGTTG
64 C-GGTCATTTTCATTT-TCTGACTCATGATTTAATCCCTGTCA
* * *
3545479 TTTTCATTTTTTAACTCATGGTTTAATCCTAATCATTTTTCATTTTCTAACTAGTCATTTCATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCCTAATCA-TTTTCATTTTCTAACTAGTGATTTAAT-T
* ** *
3545544 CGGTCATTTTCATTTTCTGAGTTGTGGTTTAATCCCTGTCA
64 CGGTCATTTTCATTTTCTGACTCATGATTTAATCCCTGTCA
* * * * * * * *
3545585 TTTTAATTTTTTGATTCGTGGTATAATCCCAATCGTTTTCAATTT-TAGACTTGTGATTTAATTT
1 TTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTCATTTTCTA-ACTAGTGATTTAA-TT
* * * **
3545649 CGATCATTTTTATTTTTTGACTCATGATTTAATTTC-GATCA
64 CGGTCATTTTCATTTTCTGACTCATGATTTAATCCCTG-TCA
* * * * * * * *
3545690 TTTTCATTTTTTGACTAATGGTTTAATCTTGATGATTTTCATTTTTTGACTCGTGATTTAGTTTC
1 TTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTCATTTTCTAACTAGTGATTTA-ATTC
* * * * * *
3545755 GATCATTTTTA-TTTCTTGGACTTATGATTTAGT-GCTAATCA
65 GGTCATTTTCATTTTC-T-GACTCATGATTTAATCCCT-GTCA
* ** ** ** * * * *
3545796 TTTTCATTTTTTGACTCATGATTTAATTTTGGTTGTTTTCATTTTTTGACTCGTGCTTTAATCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTCATTTTCTAACTAGTGATTTAAT-TC
* * * * **
3545861 TGTCATTTTCACTTTT-TAACTTATGGTTTAATCCCTGTTG
65 GGTCATTTTCA-TTTTCTGACTCATGATTTAATCCCTGTCA
* * * * * *
3545901 TTTTACATTTTCTGACTCGTGCTTTAATCCTTATCGTTTTCA-TTT-T---T--TG-TTTAATCC
1 TTTT-CATTTTTTGACTCATGGTTTAATCCTAATCATTTTCATTTTCTAACTAGTGATTTAATTC
* * * * ** *
3545958 TTGTCATTTTTATTTTTTGATTTGTAATTTAAT-CCTGGTCA
65 -GGTCATTTTCATTTTCTGACTCATGATTTAATCCCT-GTCA
* * * ** ** * * * *
3545999 TTTTCATTTTTT-AATGCAAGGTATAATCCTGGTTGTTTTTCATTTTTTGACTTGTCATTTTAAT
1 TTTTCATTTTTTGACT-CATGGTTTAATCCT-AATCATTTTCATTTTCTAACTAGTGA-TTTAAT
* * *** * **
3546063 CCTGATTGCTTTCATTTTCTGACTCATGGTTTAAT-CCTAGTGG
63 TC-GGTCATTTTCATTTTCTGACTCATGATTTAATCCCT-GTCA
* * * * * * * * * * * * *
3546106 TTTTTATTTTCTCACTCAGGGTTTAGTCCCAGTCTTTTTCATTTTTTGACTCGTGCTTTAATTAT
1 TTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTCATTTTCTAACTAGTGATTTAATT-C
* * * * ** * * **
3546171 GGTCGTTTTAATTTTTTTAACTTGTGTTTTAATCTCAATCA
65 GGTCATTTTCA-TTTTCTGACTCATGATTTAATCCCTGTCA
* ** * * *
3546212 TTTTCATTTTTTGACTCGTAATTTAATTTCAGTAATTTTCATTATAATTTTTATTTTCTAACTTG
1 TTTTCATTTTTTGACTCATGGTTTAA--TC-CTAA---TC------ATTTTCATTTTCTAACTAG
* * * * * **
3546277 TGGTTTAATCTTGTTCATTTTCATTTTTTGACTCGTGATTTAAT-TTTGATCA
54 TGATTTAAT-TCGGTCATTTTCATTTTCTGACTCATGATTTAATCCCTG-TCA
* * * * **
3546329 TTTTTATTTTTCTGACTCATGATTTAAT-CTCAGTCATTTTCATTTTCTAACCCACAG-TTTAA-
1 TTTTCATTTTT-TGACTCATGGTTTAATCCT-AATCATTTTCATTTTCTAA-CTAGTGATTTAAT
* **
3546391 TC--CCAATTGTTTCATTTTCTGACTCATGATTTAATCCAAGTCA
63 TCGGTC-A-T-TTTCATTTTCTGACTCATGATTTAATCCCTGTCA
* * * * * *
3546434 TTTTTATTTTCTAACTCATGGTTTAATGCC-AATCATTTTTATTTTTTGACTTA-TGATTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAAT-CCTAATCATTTTCATTTTCTAAC-TAGTGATTTAAT-
* ** * * *
3546497 TCGATCGCTTTCATTTTCTAACTCATGGTTTAATTCCC-ATCA
63 TCGGTCATTTTCATTTTCTGACTCATGATTTAA-TCCCTGTCA
* ** ** * * * * *
3546539 TTTTTCATTTTTTGACTCGT-AATTAATTTTTAGTCATTTTTATTTCTTTGACTCA-TGGTTTAA
1 -TTTTCATTTTTTGACTCATGGTTTAA-TCCTAATCATTTTCATTT-TCTAACT-AGTGATTTAA
* * * *
3546602 -TC-CTCATTGTCTTCATTTTCTGACTCATGGTTTAATCTC-GGCA
62 TTCGGTCA-T-T-TTCATTTTCTGACTCATGATTTAATCCCTGTCA
* * *** * * *
3546645 GGTCTTCATTTTCTGACTCATGGTTTAAT-CTCGGCAGGTCTTCATTTTCTGACTA--G-TTTCA
1 --TTTTCATTTTTTGACTCATGGTTTAATCCTAATCA--TTTTCATTTTCTAACTAGTGATTTAA
** ** * *
3546706 TCTCGGTTGTTTTCATTGTT-TGACTTGTGGTTTAATCCCTATCA
62 T-TCGGTCATTTTCATT-TTCTGACTCATGATTTAATCCCTGTCA
* * * * * * ** *
3546750 TTTTAAATTTCT-ACCTCATGATTTGATCCTGATTGTTTTCAGTTT-TAGACTCA-TGATTTAAT
1 TTTTCATTTTTTGA-CTCATGGTTTAATCCTAATCATTTTCATTTTCTA-ACT-AGTGATTTAA-
* * * ** * ** * *
3546812 TTTGATCA-TTT--TTTTCTAACTTGTAATTTAATTTCAGTCG
62 TTCGGTCATTTTCATTTTCTGACTCATGATTTAATCCCTGTCA
* ** * * * *
3546852 TTTTCATTTTTTGACT-AGTGGTTTAATCTTGGTCATTTTCATTTTTTCACTTGTGATTTAGTTT
1 TTTTCATTTTTTGACTCA-TGGTTTAATCCTAATCATTTTCATTTTCTAACTAGTGATTTA-ATT
* ** * * * * ***
3546916 CAGTTGTTTTTATTTCTTTGGCTCATAATTTAA-AGTTGATCA
64 CGGTCATTTTCATTT-TCTGACTCATGATTTAATCCCTG-TCA
** * ** * *
3546958 TTTTCATTTTTTGACTCATCATTTAATTCTGGTCATTTTCATTTTCTGAA-TCGTGCTTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTCATTTTCT-AACTAGTGATTTAAT-T
** * * * *
3547022 TAGTCATTTTCACATTT-TGACTTATGGTTTAGTCCTCAT-TC-
64 CGGTCATTTTCA-TTTTCTGACTCATGATTTAATCC-C-TGTCA
* * * * *
3547063 TTTTACATTTTCTGACT-GTGCTTTAATCCCT-AT-AGTTTTCATTTTCTGA-TGCATTG-TTTA
1 TTTT-CATTTTTTGACTCATGGTTTAAT-CCTAATCA-TTTTCATTTTCTAACT--AGTGATTTA
* ** * * *
3547123 ATCCCTATCATTTTTATTTTTTGACTCAAGATTTAAT-CCTGGTCA
61 AT-TCGGTCATTTTCATTTTCTGACTCATGATTTAATCCCT-GTCA
* * * * *
3547168 CTTTCATTTTTTGACTCGTGGTATAATCCTAATCATTTTTCATTTAT-TGACTCATTG-TTTAAT
1 TTTTCATTTTTTGACTCATGGTTTAATCCTAATCA-TTTTCATTT-TCTAACT-AGTGATTTAAT
*** * ** *
3547231 CTCGGTTGCTTTCATTTTCTAACTCATGGCTTAAT-CCTAGTCG
63 -TCGGTCATTTTCATTTTCTGACTCATGATTTAATCCCT-GTCA
* * * * *
3547274 TTTTCATTTTCTTG-CTTAGGGTTTAGTGCC-AGTCATTTTCATTTTCTAACTCGTGCA-TTAAT
1 TTTTCATTTT-TTGACTCATGGTTTAAT-CCTAATCATTTTCATTTTCTAACTAGTG-ATTTAA-
* * * * * * *
3547336 TTTGGTCGTTTTCATTTT-TAACTCGTGTTTTAATCCCAGTAA
62 TTCGGTCATTTTCATTTTCTGACTCATGATTTAATCCCTGTCA
3547378 TTTTCATTT
1 TTTTCATTT
3547387 AGACTCATAA
Statistics
Matches: 1486, Mismatches: 394, Indels: 270
0.69 0.18 0.13
Matches are distributed among these distances:
96 2 0.00
97 25 0.02
98 40 0.03
99 5 0.00
100 1 0.00
101 5 0.00
102 76 0.05
103 31 0.02
104 129 0.09
105 366 0.25
106 534 0.36
107 165 0.11
108 22 0.01
109 1 0.00
112 4 0.00
114 1 0.00
115 1 0.00
116 2 0.00
117 31 0.02
118 44 0.03
119 1 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (104 bp):
TTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTCATTTTCTAACTAGTGATTTAATTCG
GTCATTTTCATTTTCTGACTCATGATTTAATCCCTGTCA
Found at i:3545954 original size:27 final size:27
Alignment explanation
Indices: 3545923--3545976 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
3545913 TGACTCGTGC
*
3545923 TTTAATCCTTATCGTTTTCATTTTTTG
1 TTTAATCCTTATCATTTTCATTTTTTG
* *
3545950 TTTAATCCTTGTCATTTTTATTTTTTG
1 TTTAATCCTTATCATTTTCATTTTTTG
3545977 ATTTGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.15, C:0.13, G:0.07, T:0.65
Consensus pattern (27 bp):
TTTAATCCTTATCATTTTCATTTTTTG
Found at i:3546433 original size:69 final size:68
Alignment explanation
Indices: 3546328--3546674 Score: 310
Period size: 71 Copynumber: 5.0 Consensus size: 68
3546318 AATTTTGATC
* **
3546328 ATTTTT-ATTTTTCTGACTCATGATTTAATCTCAGTCATTTTCATTTTCTAACCCACAGTTTAAT
1 ATTTTTCA-TTTTCTGACTCATGATTTAATCTCAGTCATTTTCATTTTCTAACTCATGGTTTAAT
3546392 CCCA
65 CCCA
*
3546396 ATTGTTTCATTTTCTGACTCATGATTTAATC-CAAGTCATTTTTATTTTCTAACTCATGGTTTAA
1 ATT-TTTCATTTTCTGACTCATGATTTAATCTC-AGTCATTTTCATTTTCTAACTCATGGTTTAA
*
3546460 TGCCA
64 TCCCA
* * * **
3546465 ATCATTTTTATTTTTTGACTTATGATTTAATCTC-GATCGCTTTCATTTTCTAACTCATGGTTTA
1 AT--TTTTCATTTTCTGACTCATGATTTAATCTCAG-TCATTTTCATTTTCTAACTCATGGTTTA
3546529 ATTCCCA
63 A-TCCCA
* * * * * * * *
3546536 TCATTTTTCATTTTTTGACTCGT-AATTAATTTTTAGTCATTTTTATTTCTTTGACTCATGGTTT
1 --ATTTTTCATTTTCTGACTCATGATTTAA-TCTCAGTCATTTTCATTT-TCTAACTCATGGTTT
3546600 AATCCTC-
62 AATCC-CA
* * * *
3546607 ATTGTCTTCATTTTCTGACTCATGGTTTAATCTC-GGCAGGTCTTCATTTTCTGACTCATGGTTT
1 ATT-T-TTCATTTTCTGACTCATGATTTAATCTCAGTCA--TTTTCATTTTCTAACTCATGGTTT
3546671 AATC
62 AATC
3546675 TCGGCAGGTC
Statistics
Matches: 227, Mismatches: 33, Indels: 35
0.77 0.11 0.12
Matches are distributed among these distances:
68 4 0.02
69 62 0.27
70 60 0.26
71 71 0.31
72 28 0.12
73 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.10, T:0.50
Consensus pattern (68 bp):
ATTTTTCATTTTCTGACTCATGATTTAATCTCAGTCATTTTCATTTTCTAACTCATGGTTTAATC
CCA
Found at i:3546628 original size:107 final size:107
Alignment explanation
Indices: 3546326--3546637 Score: 282
Period size: 104 Copynumber: 2.9 Consensus size: 107
3546316 TTAATTTTGA
* * * * * * * **
3546326 TCATTTTTATTTTTCTGACTCATGATTTAAT-CTCAGTCATTTTCATTTTCTAACCCACAGTTTA
1 TCATTTTTA-TTTTCTAACTCATGAATTAATGC-CAATCATTTTTATTTTTTGACTCATGGTTTA
*
3546390 ATCC-CAATTGT-TTCATTTTCTGACTCATGATTTAA-TCCAAG
64 ATCCTCAATTGTCTTCATTTTCTGACTCATGGTTTAATTCCAAG
** * *
3546431 TCATTTTTATTTTCTAACTCATGGTTTAATGCCAATCATTTTTATTTTTTGACTTATGATTTAAT
1 TCATTTTTATTTTCTAACTCATGAATTAATGCCAATCATTTTTATTTTTTGACTCATGGTTTAAT
* * * *
3546496 -CTCGATCG-CTTTCATTTTCTAACTCATGGTTTAATTCCCA-
66 CCTCAATTGTC-TTCATTTTCTGACTCATGGTTTAATTCCAAG
* * * *** *
3546536 TCATTTTTCATTTTTTGACTCGT-AATTAATTTTTAGTCATTTTTATTTCTTTGACTCATGGTTT
1 TCATTTTT-ATTTTCTAACTCATGAATTAA-TGCCAATCATTTTTATTT-TTTGACTCATGGTTT
3546600 AATCCTC-ATTGTCTTCATTTTCTGACTCATGGTTTAAT
63 AATCCTCAATTGTCTTCATTTTCTGACTCATGGTTTAAT
3546638 CTCGGCAGGT
Statistics
Matches: 168, Mismatches: 29, Indels: 18
0.78 0.13 0.08
Matches are distributed among these distances:
103 1 0.01
104 47 0.28
105 44 0.26
106 29 0.17
107 43 0.26
108 4 0.02
ACGTcount: A:0.22, C:0.18, G:0.09, T:0.51
Consensus pattern (107 bp):
TCATTTTTATTTTCTAACTCATGAATTAATGCCAATCATTTTTATTTTTTGACTCATGGTTTAAT
CCTCAATTGTCTTCATTTTCTGACTCATGGTTTAATTCCAAG
Found at i:3546650 original size:36 final size:36
Alignment explanation
Indices: 3546587--3546698 Score: 183
Period size: 36 Copynumber: 3.1 Consensus size: 36
3546577 TTTATTTCTT
* *
3546587 TGACTCATGGTTTAATC-C-TCATTGTCTTCATTTTC
1 TGACTCATGGTTTAATCTCGGCA-GGTCTTCATTTTC
3546622 TGACTCATGGTTTAATCTCGGCAGGTCTTCATTTTC
1 TGACTCATGGTTTAATCTCGGCAGGTCTTCATTTTC
3546658 TGACTCATGGTTTAATCTCGGCAGGTCTTCATTTTC
1 TGACTCATGGTTTAATCTCGGCAGGTCTTCATTTTC
3546694 TGACT
1 TGACT
3546699 AGTTTCATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
35 17 0.23
36 54 0.74
37 2 0.03
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (36 bp):
TGACTCATGGTTTAATCTCGGCAGGTCTTCATTTTC
Found at i:3547247 original size:71 final size:71
Alignment explanation
Indices: 3547120--3547282 Score: 167
Period size: 71 Copynumber: 2.3 Consensus size: 71
3547110 GATGCATTGT
* * *
3547120 TTAATCCCT-ATCATTTTT-ATTTTTTGACTCAAGATTTAATCCTGGTCACTTTCATTTTTTGAC
1 TTAAT-CCTAATCATTTTTCATTTATTGACTCAAGATTTAATCCTGGTCACTTTCATTTTCTAAC
*
3547183 TCGTGG-
65 TCATGGC
* **
3547189 TATAATCCTAATCATTTTTCATTTATTGACTCATTG-TTTAAT-CTCGGTTGCTTTCATTTTCTA
1 T-TAATCCTAATCATTTTTCATTTATTGACTCA-AGATTTAATCCT-GGTCACTTTCATTTTCTA
3547252 ACTCATGGC
63 ACTCATGGC
* *
3547261 TTAATCCTAGTC-GTTTTCATTT
1 TTAATCCTAATCATTTTTCATTT
3547283 TCTTGCTTAG
Statistics
Matches: 79, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
69 4 0.05
70 24 0.30
71 49 0.62
72 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.10, T:0.50
Consensus pattern (71 bp):
TTAATCCTAATCATTTTTCATTTATTGACTCAAGATTTAATCCTGGTCACTTTCATTTTCTAACT
CATGGC
Found at i:3547279 original size:35 final size:35
Alignment explanation
Indices: 3546955--3547386 Score: 104
Period size: 35 Copynumber: 12.3 Consensus size: 35
3546945 TTAAAGTTGA
* * *** * *
3546955 TCATTTTCATTTTTTGACTCATCATTTAATTCTGG
1 TCATTTTCATTTTCTAACTCATGGCTTAATCCTAG
* *
3546990 TCATTTTCATTTTCTGAA-TCGT-GCTTTAATCTTAG
1 TCATTTTCATTTTCT-AACTCATGGC-TTAATCCTAG
* * * * * *
3547025 TCATTTTCACATTT-TGACTTATGGTTTAGTCCTCAT
1 TCATTTTCA-TTTTCTAACTCATGGCTTAATCCT-AG
* *
3547061 TC-TTTTACATTTTCTGACT-GT-GCTTTAATCCCTA-
1 TCATTTT-CATTTTCTAACTCATGGC-TTAAT-CCTAG
* * *
3547095 T-AGTTTTCATTTTCTGA-TGCATTGTTTAATCCCTA-
1 TCA-TTTTCATTTTCTAACT-CATGGCTTAAT-CCTAG
* * * * ** *
3547130 TCATTTTTATTTTTTGACTCAAGATTTAATCCTGG
1 TCATTTTCATTTTCTAACTCATGGCTTAATCCTAG
* * * * *
3547165 TCACTTTCATTTTTTGACTCGTGG-TATAATCCTAA
1 TCATTTTCATTTTCTAACTCATGGCT-TAATCCTAG
* * * *
3547200 TCATTTTTCATTTAT-TGACTCATTGTTTAAT-CTCGG
1 TCA-TTTTCATTT-TCTAACTCATGGCTTAATCCT-AG
***
3547236 TTGCTTTCATTTTCTAACTCATGGCTTAATCCTAG
1 TCATTTTCATTTTCTAACTCATGGCTTAATCCTAG
* ** * * * *
3547271 TCGTTTTCATTTTCTTGCTTAGGGTTTAGTGCC-AG
1 TCATTTTCATTTTCTAACTCATGGCTTAAT-CCTAG
* ** *
3547306 TCATTTTCATTTTCTAACTCGT-GCATTAATTTTGG
1 TCATTTTCATTTTCTAACTCATGGC-TTAATCCTAG
* * ** *
3547341 TCGTTTTCATTTT-TAACTCGTGTTTTAATCCCAG
1 TCATTTTCATTTTCTAACTCATGGCTTAATCCTAG
*
3547375 TAATTTTCATTT
1 TCATTTTCATTT
3547387 AGACTCATAA
Statistics
Matches: 293, Mismatches: 75, Indels: 59
0.69 0.18 0.14
Matches are distributed among these distances:
33 1 0.00
34 43 0.15
35 201 0.69
36 46 0.16
37 2 0.01
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.51
Consensus pattern (35 bp):
TCATTTTCATTTTCTAACTCATGGCTTAATCCTAG
Found at i:3547574 original size:35 final size:35
Alignment explanation
Indices: 3547549--3547976 Score: 173
Period size: 35 Copynumber: 12.2 Consensus size: 35
3547539 TGACCCGTGA
* * ***
3547549 TTTAATCTCGGTAGTTTTCATTTTCTAACCCATGG
1 TTTAATCTCGGTAGTTTTCATTTTTTGACTTGTGG
* * *
3547584 TTTAATCCCAGTCA-TTTTCATTTTTTGAAC-TATGG
1 TTTAATCTCGGT-AGTTTTCATTTTTTG-ACTTGTGG
* * * *
3547619 TTTAATCTTGGGCA-TTTTAATTTTTTGACTTGTGA
1 TTTAATC-TCGGTAGTTTTCATTTTTTGACTTGTGG
* * *
3547654 TTTAATCTTGGTTGTTTCCATTTTTTGACTTGTGG
1 TTTAATCTCGGTAGTTTTCATTTTTTGACTTGTGG
* * * *
3547689 TATAATC-CTGGTTGTTTTTATTTTCTT-ACTTGTGA
1 TTTAATCTC-GGTAGTTTTCATTTT-TTGACTTGTGG
* * *
3547724 TTTAATCTCAGTTGTTTTCATTTTTTGACTCGTGG
1 TTTAATCTCGGTAGTTTTCATTTTTTGACTTGTGG
** * ** *
3547759 TTTAAT-TC-CCA-TCATTTCATTTTCTGACTCCTGA
1 TTTAATCTCGGTAGT--TTTCATTTTTTGACTTGTGG
* * * *
3547793 CTTAAT-TCTGGTCA-TTTTTATTCCTTTGACTCGTGG
1 TTTAATCTC-GGT-AGTTTTCATT-TTTTGACTTGTGG
* * * **
3547829 TTTAATCTCTGTTGTTTTCATTTTTTAACTCATGG
1 TTTAATCTCGGTAGTTTTCATTTTTTGACTTGTGG
* ** *
3547864 TTTAATCGT-GATCTTTTTTCATTTTCTGA-TTAGTGG
1 TTTAATC-TCGGT-AGTTTTCATTTTTTGACTT-GTGG
* ** * * * *
3547900 TTTCATCTCAATCGTTTTTATTTTCTGACTCGTGG
1 TTTAATCTCGGTAGTTTTCATTTTTTGACTTGTGG
** *
3547935 TTTAATCTCTATCA-TTTTAATTTTTTGACTTGT-G
1 TTTAATCTCGGT-AGTTTTCATTTTTTGACTTGTGG
3547969 TTTAATCT
1 TTTAATCT
3547977 TGATCATTTT
Statistics
Matches: 302, Mismatches: 68, Indels: 47
0.72 0.16 0.11
Matches are distributed among these distances:
32 1 0.00
34 42 0.14
35 199 0.66
36 56 0.19
37 4 0.01
ACGTcount: A:0.18, C:0.15, G:0.14, T:0.53
Consensus pattern (35 bp):
TTTAATCTCGGTAGTTTTCATTTTTTGACTTGTGG
Found at i:3547658 original size:70 final size:69
Alignment explanation
Indices: 3547584--3547764 Score: 202
Period size: 70 Copynumber: 2.6 Consensus size: 69
3547574 TAACCCATGG
* ** * *
3547584 TTTAATCCCAGTCATTTTCATTTTTTGAACTATGGTTTAATCTTGGGCATTTTAATTTT-TTGAC
1 TTTAATCTCAGTTGTTTTCATTTTTTG-ACTGTGGTTTAATCCTGGGCATTTTAATTTTCTT-AC
3547648 TTGTGA
64 TTGTGA
** * * *** *
3547654 TTTAATCTTGGTTGTTTCCATTTTTTGACTTGTGGTATAATCCTGGTTGTTTTTATTTTCTTACT
1 TTTAATCTCAGTTGTTTTCATTTTTTGAC-TGTGGTTTAATCCTGGGCATTTTAATTTTCTTACT
3547719 TGTGA
65 TGTGA
3547724 TTTAATCTCAGTTGTTTTCATTTTTTGACTCGTGGTTTAAT
1 TTTAATCTCAGTTGTTTTCATTTTTTGACT-GTGGTTTAAT
3547765 TCCCATCATT
Statistics
Matches: 91, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
69 3 0.03
70 86 0.95
71 2 0.02
ACGTcount: A:0.18, C:0.12, G:0.15, T:0.55
Consensus pattern (69 bp):
TTTAATCTCAGTTGTTTTCATTTTTTGACTGTGGTTTAATCCTGGGCATTTTAATTTTCTTACTT
GTGA
Found at i:3547834 original size:36 final size:33
Alignment explanation
Indices: 3547739--3548195 Score: 113
Period size: 35 Copynumber: 13.1 Consensus size: 33
3547729 TCTCAGTTGT
**
3547739 TTTCATTTTTTGACTCGTGGTTTAATTCCCATCA
1 TTTCA-TTTTTGACTCGTGGTTTAATTCTGATCA
* ** *
3547773 TTTCATTTTCTGACTCCTGACTTAATTCTGGTCA
1 TTTCATTTT-TGACTCGTGGTTTAATTCTGATCA
* * **
3547807 TTTTTATTCCTTTGACTCGTGGTTTAATCTCTGTTGT
1 -TTTCATT--TTTGACTCGTGGTTTAAT-TCTGATCA
* * *
3547844 TTTCATTTTTTAACTCATGGTTTAA-TCGTGATCTTT
1 TTTCA-TTTTTGACTCGTGGTTTAATTC-TGATC--A
* * * * *
3547880 TTTCATTTTCTGATTAGTGGTTTCA-TCTCAATCGT
1 TTTCATTTT-TGACTCGTGGTTTAATTCT-GATC-A
*
3547915 TTTTATTTTCTGACTCGTGGTTTAATCTCT-ATCA
1 TTTCATTTT-TGACTCGTGGTTTAAT-TCTGATCA
* *
3547949 TTTTAATTTTTTGACTTGT-GTTTAA-TCTTGATCA
1 -TTTCA-TTTTTGACTCGTGGTTTAATTC-TGATCA
* * * ** *
3547983 TTTTTAATTTTAGTCTTATGATTTAATT-TCGATCA
1 --TTTCATTTTTGACTCGTGGTTTAATTCT-GATCA
* * * * ** *
3548018 TTTTTATTTTCTAACTCGTGATTTAAATCCAATCGT
1 -TTTCATTTT-TGACTCGTGGTTTAATTCTGATC-A
* * *
3548054 TTTCAATTTTTGACTAAG-GGTTTAATCCTGGTCA
1 TTTC-ATTTTTGACT-CGTGGTTTAATTCTGATCA
* * * *
3548088 TTTCATTTTTTGACTCATGATTTAGTTCTGA-AA
1 TTTCA-TTTTTGACTCGTGGTTTAATTCTGATCA
* * **
3548121 GTTTTTATTTCTTAGACTTGTAATTTAATATC-GATCA
1 --TTTCATTT-TT-GACTCGTGGTTTAAT-TCTGATCA
** *
3548158 TTTTCATTCTTTGACTCGTCATTTAATTCTGGTCA
1 -TTTCATT-TTTGACTCGTGGTTTAATTCTGATCA
3548193 TTT
1 TTT
3548196 TTGTTTTCTA
Statistics
Matches: 314, Mismatches: 73, Indels: 72
0.68 0.16 0.16
Matches are distributed among these distances:
32 2 0.01
33 9 0.03
34 85 0.27
35 131 0.42
36 71 0.23
37 16 0.05
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (33 bp):
TTTCATTTTTGACTCGTGGTTTAATTCTGATCA
Found at i:3547988 original size:35 final size:35
Alignment explanation
Indices: 3547616--3548043 Score: 176
Period size: 35 Copynumber: 12.2 Consensus size: 35
3547606 TTTTGAACTA
** * *
3547616 TGGTTTAATCTTGGGCATTTTAATTTTTTGACTTG
1 TGGTTTAATCTTGATCATTTTTATTTTCTGACTTG
* * ** ** *
3547651 TGATTTAATCTTGGTTGTTTCCATTTTTTGACTTG
1 TGGTTTAATCTTGATCATTTTTATTTTCTGACTTG
* * * ** *
3547686 TGGTATAATCCTGGTTGTTTTTATTTTCTTACTTG
1 TGGTTTAATCTTGATCATTTTTATTTTCTGACTTG
* * ** * * *
3547721 TGATTTAATC-TCAGTTGTTTTCATTTTTTGACTCG
1 TGGTTTAATCTTGA-TCATTTTTATTTTCTGACTTG
** * **
3547756 TGGTTTAAT-TCCCATCA-TTTCATTTTCTGACTCC
1 TGGTTTAATCT-TGATCATTTTTATTTTCTGACTTG
** * *
3547790 TGACTTAAT-TCTGGTCATTTTTATTCCTT-TGACTCG
1 TGGTTTAATCT-TGATCATTTTTATT--TTCTGACTTG
** * * * **
3547826 TGGTTTAATCTCTG-TTGTTTTCATTTTTTAACTCA
1 TGGTTTAATCT-TGATCATTTTTATTTTCTGACTTG
* *
3547861 TGGTTTAATCGTGATCTTTTTTCATTTTCTGA-TTAG
1 TGGTTTAATCTTGATCATTTTT-ATTTTCTGACTT-G
* ** * *
3547897 TGGTTTCATCTCAATCGTTTTTATTTTCTGACTCG
1 TGGTTTAATCTTGATCATTTTTATTTTCTGACTTG
* *
3547932 TGGTTTAATCTCT-ATCATTTTAATTTTTTGACTTG
1 TGGTTTAATCT-TGATCATTTTTATTTTCTGACTTG
* * *
3547967 T-GTTTAATCTTGATCATTTTTAATTTT-AGTCTTA
1 TGGTTTAATCTTGATCATTTTT-ATTTTCTGACTTG
* * *
3548001 TGATTTAAT-TTCGATCATTTTTATTTTCTAACTCG
1 TGGTTTAATCTT-GATCATTTTTATTTTCTGACTTG
*
3548036 TGATTTAA
1 TGGTTTAA
3548044 ATCCAATCGT
Statistics
Matches: 304, Mismatches: 71, Indels: 36
0.74 0.17 0.09
Matches are distributed among these distances:
33 1 0.00
34 61 0.20
35 188 0.62
36 48 0.16
37 6 0.02
ACGTcount: A:0.18, C:0.14, G:0.14, T:0.54
Consensus pattern (35 bp):
TGGTTTAATCTTGATCATTTTTATTTTCTGACTTG
Found at i:3548306 original size:35 final size:34
Alignment explanation
Indices: 3548265--3548415 Score: 123
Period size: 35 Copynumber: 4.4 Consensus size: 34
3548255 TATTGGTTTA
*
3548265 CATTTTTTGACTCATGTTTAATCCCTATCATTTT
1 CATTTTTTGACTCATGTTTAATCCATATCATTTT
*
3548299 CATTTTTTGA-TGCATTGTTTAAGCCATATCATTTT
1 CATTTTTTGACT-CA-TGTTTAATCCATATCATTTT
* * *
3548334 TATTTTTTGACTCGTGATTTAATCCGAT-T-GTTTT
1 CATTTTTTGACTCATG-TTTAATCC-ATATCATTTT
* * * *
3548368 CA-TTTTTGACTCGTCGTATAATCCCA-GTCTTTTTT
1 CATTTTTTGACTCAT-GTTTAAT-CCATATC-ATTTT
3548403 CATTTTTTGACTC
1 CATTTTTTGACTC
3548416 GTCATTTAAT
Statistics
Matches: 97, Mismatches: 9, Indels: 20
0.77 0.07 0.16
Matches are distributed among these distances:
33 20 0.21
34 22 0.23
35 42 0.43
36 13 0.13
ACGTcount: A:0.19, C:0.18, G:0.11, T:0.52
Consensus pattern (34 bp):
CATTTTTTGACTCATGTTTAATCCATATCATTTT
Found at i:3548378 original size:33 final size:36
Alignment explanation
Indices: 3548330--3548427 Score: 114
Period size: 33 Copynumber: 2.8 Consensus size: 36
3548320 AGCCATATCA
* *
3548330 TTTTTATTTTTTGACTCGTGATTTAATCCGA-T-TG
1 TTTTCATTTTTTGACTCGTGATTTAATCCCAGTCTG
* *
3548364 TTTTCA-TTTTTGACTCGTCG-TATAATCCCAGTCTT
1 TTTTCATTTTTTGACTCGT-GATTTAATCCCAGTCTG
*
3548399 TTTTCATTTTTTGACTCGTCATTTAATCC
1 TTTTCATTTTTTGACTCGTGATTTAATCC
3548428 TTGATCGCTT
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
33 20 0.38
34 7 0.13
35 7 0.13
36 19 0.36
ACGTcount: A:0.17, C:0.18, G:0.11, T:0.53
Consensus pattern (36 bp):
TTTTCATTTTTTGACTCGTGATTTAATCCCAGTCTG
Found at i:3548440 original size:36 final size:34
Alignment explanation
Indices: 3548260--3548451 Score: 111
Period size: 35 Copynumber: 5.5 Consensus size: 34
3548250 ATCCTTATTG
* * * *
3548260 GTTTACATTTTTTGACTCAT-GTTTAATCCCTATC
1 GTTTTCATTTTTTGACTCGTCATTTAAT-CCGATC
* * ** * *
3548294 ATTTTCATTTTTTGA-TGCATTGTTTAAGCCATATC
1 GTTTTCATTTTTTGACT-CGTCATTTAATCC-GATC
* * * *
3548329 ATTTTTATTTTTTGACTCGTGATTTAATCCGATT
1 GTTTTCATTTTTTGACTCGTCATTTAATCCGATC
* * *
3548363 GTTTTCA-TTTTTGACTCGTCGTATAATCCCAGTC
1 GTTTTCATTTTTTGACTCGTCATTTAATCCGA-TC
*
3548397 TTTTTTCATTTTTTGACTCGTCATTTAATCCTTGATC
1 -GTTTTCATTTTTTGACTCGTCATTTAATCC--GATC
* * *
3548434 GCTTTCATGTTTAGACTC
1 GTTTTCATTTTTTGACTC
3548452 ATGGCTTAAT
Statistics
Matches: 124, Mismatches: 25, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
33 21 0.17
34 26 0.21
35 39 0.31
36 35 0.28
37 2 0.02
38 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.11, T:0.51
Consensus pattern (34 bp):
GTTTTCATTTTTTGACTCGTCATTTAATCCGATC
Found at i:3548776 original size:35 final size:35
Alignment explanation
Indices: 3548616--3548809 Score: 119
Period size: 35 Copynumber: 5.4 Consensus size: 35
3548606 AATTTTCATT
*
3548616 ATCATTTTCAGTTTTCTAACTCAATGGTTTAATCTCTG
1 ATCATTTTCA-TTTTCTAACTC-ATGATTTAATCT-TG
* ** * *
3548654 TTCATTTTCATTTT-TTGCTCATGATTTAATTTTCA
1 ATCATTTTCATTTTCTAACTCATGATTTAATCTT-G
* ** *
3548689 ATCATTTTTATTTCTCT-ACTTGTGATTTTAA-CGTCG
1 ATCATTTTCATTT-TCTAACTCATGA-TTTAATC-TTG
* *
3548725 ATCGTTTCCCATTTTCTAACTCATGATTTAATCTTG
1 ATCATTT-TCATTTTCTAACTCATGATTTAATCTTG
* * *
3548761 TTCATTTTCGTTTTCTAAC-CAATGATTTAATCCT-
1 ATCATTTTCATTTTCTAACTC-ATGATTTAATCTTG
*
3548795 AGTCGTTTTCATTTT
1 A-TCATTTTCATTTT
3548810 TTCTGACCAA
Statistics
Matches: 118, Mismatches: 28, Indels: 23
0.70 0.17 0.14
Matches are distributed among these distances:
34 2 0.02
35 54 0.46
36 31 0.26
37 22 0.19
38 9 0.08
ACGTcount: A:0.21, C:0.18, G:0.09, T:0.52
Consensus pattern (35 bp):
ATCATTTTCATTTTCTAACTCATGATTTAATCTTG
Found at i:3548821 original size:37 final size:37
Alignment explanation
Indices: 3548771--3548845 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
3548761 TTCATTTTCG
* *
3548771 TTTTCTAACCAATGATTTAATCCTAGTCGTTTTCATT
1 TTTTCTAACCAATGATTTAATCCCAATCGTTTTCATT
* *
3548808 TTTTCTGACCAATGGTTTAATCCCAATCGTTTTCATT
1 TTTTCTAACCAATGATTTAATCCCAATCGTTTTCATT
3548845 T
1 T
3548846 ATTGACTGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.23, C:0.20, G:0.09, T:0.48
Consensus pattern (37 bp):
TTTTCTAACCAATGATTTAATCCCAATCGTTTTCATT
Found at i:3549058 original size:35 final size:35
Alignment explanation
Indices: 3549018--3549507 Score: 132
Period size: 35 Copynumber: 14.0 Consensus size: 35
3549008 TTAATTTCTT
* *
3549018 TGACTCATGGTTTAATCCTCATTGTCTTCATTTTC
1 TGACTCATGGTTTAATCCTCATCGTTTTCATTTTC
* * * *
3549053 TGACTCTTGGTTTAATACTGATTGTTTTTCATTTTC
1 TGACTCATGGTTTAATCCTCATCG-TTTTCATTTTC
* * * * * *
3549089 T-A--GATGGTTTCATCTTGATCATTTTTATTTTC
1 TGACTCATGGTTTAATCCTCATCGTTTTCATTTTC
* * *
3549121 TGACTCATGCTTTAATCC-CTATCGTTTTAATTTTT
1 TGACTCATGGTTTAATCCTC-ATCGTTTTCATTTTC
* * *
3549156 TGACTCATGGTTTAA-CTTTAGTTGTTTTCAATTTT-
1 TGACTCATGGTTTAATCCTCA-TCGTTTTC-ATTTTC
* * * * * *
3549191 AGACTCGTGATTTAAAT--TTAGTCACTTTT-ATTTTT
1 TGACTCATGGTTT-AATCCTCA-TC-GTTTTCATTTTC
* * * *
3549226 TGACTCGTGATTTAATTC-CAGTCGTTTTCATTTTT
1 TGACTCATGGTTTAATCCTCA-TCGTTTTCATTTTC
* * *
3549261 TGACT-AGTGGTTTAATCCTAATCATTTTCATTTTT
1 TGACTCA-TGGTTTAATCCTCATCGTTTTCATTTTC
* * * ** ** * * *
3549296 TGACTCGTGATTTAGTTTTGGTCATTTTTATTTCTT
1 TGACTCATGGTTTAATCCTCATCGTTTTCATTT-TC
* * * *
3549332 TGACTCATGATTTAATGCC-AATCATTTTCATTTTT
1 TGACTCATGGTTTAAT-CCTCATCGTTTTCATTTTC
* ** * * * *
3549367 TGACTCGTCATTTAATTC-CAGTCATTTTCCTTTTT
1 TGACTCATGGTTTAATCCTCA-TCGTTTTCATTTTC
* ** * ** *
3549402 TAACTTGTGGTTTAATCTTGGTCATTTTCACTTTT-
1 TGACTCATGGTTTAATCCTCATCGTTTTCA-TTTTC
** **
3549437 TGACTTGTGGTTTAATCC-CTATTATTTTACATTTT-
1 TGACTCATGGTTTAATCCTC-ATCGTTTT-CATTTTC
**
3549472 TGACTCATCCTTTAATCC-CTATCGTTTTCATTTTC
1 TGACTCATGGTTTAATCCTC-ATCGTTTTCATTTTC
3549507 T
1 T
3549508 AATGCGTTGT
Statistics
Matches: 351, Mismatches: 78, Indels: 52
0.73 0.16 0.11
Matches are distributed among these distances:
32 11 0.03
33 13 0.04
34 22 0.06
35 249 0.71
36 56 0.16
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.53
Consensus pattern (35 bp):
TGACTCATGGTTTAATCCTCATCGTTTTCATTTTC
Found at i:3549259 original size:105 final size:105
Alignment explanation
Indices: 3548946--3549372 Score: 307
Period size: 105 Copynumber: 4.1 Consensus size: 105
3548936 TGACAGCTTT
* * *
3548946 ATTTTTTGACTC-GTGGTTTAATTCC-AATCATTTT---TTTT-TA-TTGTGATTT-AATTTTGA
1 ATTTTTTGACTCAGTGGTTTAA-TCCTAATCATTTTCAATTTTAGACTCGTGATTTAAATTTAG-
* * *
3549003 TCA-TTTTAATTTCTTTGACTCATGGTTTAATCCTCATTGTCTTC
64 TCACTTTT-ATTT-TTTGACTCATGATTTAATCC-CATCGTTTTC
* * * * ** * *
3549047 ATTTTCTGACTC-TTGGTTTAATACTGATTGTTTTTCATTTTCTAGA-T-G-G-TTT-CATCTT-
1 ATTTTTTGACTCAGTGGTTTAATCCT-AATCATTTTCAATTT-TAGACTCGTGATTTAAAT-TTA
* * * *
3549105 GATCATTTTTATTTTCTGACTCATGCTTTAATCCCTATCGTTTTA
63 G-TCACTTTTATTTTTTGACTCATGATTTAATCCC-ATCGTTTTC
* * **
3549150 ATTTTTTGACTCA-TGGTTTAA-CTTTAGTTGTTTTCAATTTTAGACTCGTGATTTAAATTTAGT
1 ATTTTTTGACTCAGTGGTTTAATC-CTAATCATTTTCAATTTTAGACTCGTGATTTAAATTTAGT
* *
3549213 CACTTTTATTTTTTGACTCGTGATTTAATTCCAGTCGTTTTC
65 CACTTTTATTTTTTGACTCATGATTTAATCCCA-TCGTTTTC
* * ** *
3549255 ATTTTTTGACT-AGTGGTTTAATCCTAATCATTTTCATTTTTTGACTCGTGATTTAGTTTTGGTC
1 ATTTTTTGACTCAGTGGTTTAATCCTAATCATTTTCAATTTTAGACTCGTGATTTAAATTTAGTC
* * *
3549319 ATTTTTATTTCTTTGACTCATGATTTAATGCCAATCATTTTC
66 ACTTTTATTT-TTTGACTCATGATTTAAT-CCCATCGTTTTC
3549361 ATTTTTTGACTC
1 ATTTTTTGACTC
3549373 GTCATTTAAT
Statistics
Matches: 261, Mismatches: 41, Indels: 42
0.76 0.12 0.12
Matches are distributed among these distances:
100 2 0.01
101 23 0.09
102 19 0.07
103 45 0.17
104 17 0.07
105 110 0.42
106 41 0.16
107 4 0.02
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.54
Consensus pattern (105 bp):
ATTTTTTGACTCAGTGGTTTAATCCTAATCATTTTCAATTTTAGACTCGTGATTTAAATTTAGTC
ACTTTTATTTTTTGACTCATGATTTAATCCCATCGTTTTC
Found at i:3549355 original size:71 final size:70
Alignment explanation
Indices: 3549107--3549556 Score: 278
Period size: 70 Copynumber: 6.4 Consensus size: 70
3549097 TTCATCTTGA
* * * * * * *
3549107 TCATTTTTATTTTCTGACTCA-TGCTTTAATCCCT-ATCGTTTTAATTTTTTGACTCATGGTTTA
1 TCATTTTCATTTTTTGACT-AGTGATTTAAT-CCTAATCATTTTCATTTTTTGACTCGTGATTTA
*
3549170 ACTT-TAG
64 A-TTCCAG
** * * * * *
3549177 TTGTTTTCAATTTTAGACTCGTGATTTAAAT-TTAGTCACTTTT-ATTTTTTGACTCGTGATTTA
1 TCATTTTCATTTTTTGACTAGTGATTT-AATCCTAATCA-TTTTCATTTTTTGACTCGTGATTTA
3549240 ATTCCAG
64 ATTCCAG
* * *
3549247 TCGTTTTCATTTTTTGACTAGTGGTTTAATCCTAATCATTTTCATTTTTTGACTCGTGATTTAGT
1 TCATTTTCATTTTTTGACTAGTGATTTAATCCTAATCATTTTCATTTTTTGACTCGTGATTTAAT
***
3549312 TTTGG
66 TCCAG
* *
3549317 TCATTTTTATTTCTTTGACTCA-TGATTTAATGCC-AATCATTTTCATTTTTTGACTCGTCATTT
1 TCATTTTCATTT-TTTGACT-AGTGATTTAAT-CCTAATCATTTTCATTTTTTGACTCGTGATTT
3549380 AATTCCAG
63 AATTCCAG
* * * * * ** * * *
3549388 TCATTTTCCTTTTTTAACTTGTGGTTTAATCTTGGTCATTTTCACTTTTTGACTTGTGGTTTAAT
1 TCATTTTCATTTTTTGACTAGTGATTTAATCCTAATCATTTTCATTTTTTGACTCGTGATTTAAT
*
3549453 CCCTA-
66 TCC-AG
* ** * * *
3549458 TTATTTTACA-TTTTTGACTCA-TCCTTTAATCCCT-ATCGTTTTCATTTTCT-AATGCGTTG-T
1 TCATTTT-CATTTTTTGACT-AGTGATTTAAT-CCTAATCATTTTCATTTTTTGACT-CG-TGAT
* *
3549518 TTAATCCCTG
61 TTAATTCCAG
* * *
3549528 TTATTTTTATTTTTTGACTTGTGATTTAA
1 TCATTTTCATTTTTTGACTAGTGATTTAA
3549557 ACNNNNNNNN
Statistics
Matches: 295, Mismatches: 64, Indels: 42
0.74 0.16 0.10
Matches are distributed among these distances:
69 14 0.05
70 208 0.71
71 70 0.24
72 3 0.01
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.53
Consensus pattern (70 bp):
TCATTTTCATTTTTTGACTAGTGATTTAATCCTAATCATTTTCATTTTTTGACTCGTGATTTAAT
TCCAG
Found at i:3549556 original size:35 final size:34
Alignment explanation
Indices: 3549107--3549556 Score: 246
Period size: 35 Copynumber: 12.9 Consensus size: 34
3549097 TTCATCTTGA
* * * * *
3549107 TCATTTTTATTTTCTGACTCATGCTTTAATCCCTA
1 TCATTTTCATTTTTTGACTCGTGATTTAAT-CCTG
* * * * *
3549142 TCGTTTTAATTTTTTGACTCATGGTTTAA-CTTTAG
1 TCATTTTCATTTTTTGACTCGTGATTTAATC-CT-G
** * * *
3549177 TTGTTTTCAATTTTAGACTCGTGATTTAAAT-TTAG
1 TCATTTTCATTTTTTGACTCGTGATTT-AATCCT-G
*
3549212 TCACTTTT-ATTTTTTGACTCGTGATTTAATTCCAG
1 TCA-TTTTCATTTTTTGACTCGTGATTTAA-TCCTG
* * * *
3549247 TCGTTTTCATTTTTTGACTAGTGGTTTAATCCTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCT-G
* **
3549282 TCATTTTCATTTTTTGACTCGTGATTTAGTTTTGG
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCT-G
* * **
3549317 TCATTTTTATTTCTTTGACTCATGATTTAATGCCAA
1 TCATTTTCATTT-TTTGACTCGTGATTTAAT-CCTG
* *
3549353 TCATTTTCATTTTTTGACTCGTCATTTAATTCCAG
1 TCATTTTCATTTTTTGACTCGTGATTTAA-TCCTG
* * * * *
3549388 TCATTTTCCTTTTTTAACTTGTGGTTTAATCTTGG
1 TCATTTTCATTTTTTGACTCGTGATTTAATCCT-G
* * * *
3549423 TCATTTTCACTTTTTGACTTGTGGTTTAATCCCTA
1 TCATTTTCATTTTTTGACTCGTGATTTAAT-CCTG
* * ** *
3549458 TTATTTTACA-TTTTTGACTCATCCTTTAATCCCTA
1 TCATTTT-CATTTTTTGACTCGTGATTTAAT-CCTG
* * *
3549493 TCGTTTTCATTTTCT-AATGCGTTG-TTTAATCCCTG
1 TCATTTTCATTTTTTGACT-CG-TGATTTAAT-CCTG
* * *
3549528 TTATTTTTATTTTTTGACTTGTGATTTAA
1 TCATTTTCATTTTTTGACTCGTGATTTAA
3549557 ACNNNNNNNN
Statistics
Matches: 323, Mismatches: 72, Indels: 40
0.74 0.17 0.09
Matches are distributed among these distances:
33 1 0.00
34 18 0.06
35 263 0.81
36 41 0.13
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.53
Consensus pattern (34 bp):
TCATTTTCATTTTTTGACTCGTGATTTAATCCTG
Found at i:3550770 original size:35 final size:35
Alignment explanation
Indices: 3550689--3551765 Score: 280
Period size: 35 Copynumber: 30.5 Consensus size: 35
3550679 TTCTTTTCCG
** *
3550689 GACTCATGATTTAATTTTGATCATTTTTATTTTTGT
1 GACTCATGATTTAATCCTGATCATTTTTA-TTTTCT
* * *
3550725 GACTTATGATTTAATACTGATCATTTTTATCTTCT
1 GACTCATGATTTAATCCTGATCATTTTTATTTTCT
* * *
3550760 GACTTATGATTTAAT-CTCGGTCATTTTCATTTTCT
1 GACTCATGATTTAATCCT-GATCATTTTTATTTTCT
* * * * * *
3550795 AACCCATGGTTTAATCCT-AGTCGTTTTCATTTTTT
1 GACTCATGATTTAATCCTGA-TCATTTTTATTTTCT
* * * * *
3550830 GACCCATGGTTTAATCTTGGTCGTTTTTATTTTCT
1 GACTCATGATTTAATCCTGATCATTTTTATTTTCT
* ** * *
3550865 AACTTGTGGTTAAATCCTGATCATTTTTATTTTCT
1 GACTCATGATTTAATCCTGATCATTTTTATTTTCT
* * * * *
3550900 AACTCATGATTTAAT-ATCAGTCACTTTCATTTTCT
1 GACTCATGATTTAATCCTGA-TCATTTTTATTTTCT
* * *
3550935 GACTCATGGTTTAATTCCT-ATCATTTTCATTTTTT
1 GACTCATGATTTAA-TCCTGATCATTTTTATTTTCT
* ** *
3550970 AACTTGTGATTTAATTCC-GGTCATTTTTA-TTTCT
1 GACTCATGATTTAA-TCCTGATCATTTTTATTTTCT
* ** *
3551004 CGACTCGTTG-TTTAATACC-CCTCATTTTCA-----T
1 -GACTC-ATGATTTAAT-CCTGATCATTTTTATTTTCT
* * * *
3551035 GACGCGTTATTTAATCCCTG-TCATTTTTATTTTTT
1 GACTCATGATTTAAT-CCTGATCATTTTTATTTTCT
* * * *
3551070 GACTCATGATTTAAT-CTCAT-TTGTTTTCTTTTTTT
1 GACTCATGATTTAATCCTGATCAT-TTTT-ATTTTCT
* * * *
3551105 GACTCATGGTATAATCCTGGTCATTTTTCATTTTTT
1 GACTCATGATTTAATCCTGATCATTTTT-ATTTTCT
* * * * *
3551141 GACTCATCATTTAATCTTGATTATTTTCATTTTTT
1 GACTCATGATTTAATCCTGATCATTTTTATTTTCT
* * * ** *
3551176 GACTCGT-AGTTTAGTCATGATGGTTTTCATTTTTCT
1 GACTCATGA-TTTAATCCTGATCATTTTTA-TTTTCT
* * * * *
3551212 CG-CTCAGGGTTTAGT-GTCAGTCATTTTTATTTTCT
1 -GACTCATGATTTAATCCTGA-TCATTTTTATTTTCT
* ** * * *
3551247 GACTCATGTTTTAATTTTGGTCGA-TTTCATTTTTT
1 GACTCATGATTTAATCCTGATC-ATTTTTATTTTCT
* * *
3551282 AACTCAT-ATTTTAATCTCTG-TTATTTTTATTTTTT
1 GACTCATGA-TTTAATC-CTGATCATTTTTATTTTCT
* * * * * * *
3551317 GACTCGTAATTTAAT-TTCAGTAATTTTCATTATC-
1 GACTCATGATTTAATCCTGA-TCATTTTTATTTTCT
** ** * * *
3551351 GTTTTCATTTTTTGACTCGTGGTTTAATTTCAATCATTTTCATTTTTT
1 G-ACTCATGATTT-AATCCT-G----A--TC-AT--TTTT-ATTTTCT
* ** *
3551399 GACTTATGATTTAATTTTGATCATTTTTATTTTTTT
1 GACTCATGATTTAATCCTGATCATTTTTA-TTTTCT
** ** * *
3551435 GACTTGTGATTTAATATTGATCGTTTTCATTTTCT
1 GACTCATGATTTAATCCTGATCATTTTTATTTTCT
* * ** *
3551470 AACTCATGATTTAAT-CTCAGTTGTTTTTAGTTTCT
1 GACTCATGATTTAATCCTGA-TCATTTTTATTTTCT
* * * * * *
3551505 -AATCCACGGTTTAATCTTGATCATTTTCATTTTTT
1 GACT-CATGATTTAATCCTGATCATTTTTATTTTCT
* * * *
3551540 GACTCGTGGTTTAATCCT-ATCATTTTCATTTTTT
1 GACTCATGATTTAATCCTGATCATTTTTATTTTCT
** * *
3551574 GACTTGTGATATAAT-CTGGGTCATTTTTATTCTT-T
1 GACTCATGATTTAATCCT-GATCATTTTTATT-TTCT
* ** *
3551609 GACTCATGGTTTAATCCTGATTGTTTTTGTTTTCAT
1 GACTCATGATTTAATCCTGATCATTTTTATTTTC-T
*
3551645 -A-TCATGATTTAAT-CTCGATTGCA--TTCATTTTCT
1 GACTCATGATTTAATCCT-GA-T-CATTTTTATTTTCT
* * ** * *
3551678 GACTCATGGTTTAATTCC-CATTGTTTTCATTTTTT
1 GACTCATGATTTAA-TCCTGATCATTTTTATTTTCT
* * *
3551713 GACTCATGATTTAATTCTGGTCATTTTTATTTCTTT
1 GACTCATGATTTAATCCTGATCATTTTTATTT-TCT
*
3551749 GACTCATGGTTTAATCC
1 GACTCATGATTTAATCC
3551766 CCATAGTCTT
Statistics
Matches: 773, Mismatches: 195, Indels: 146
0.69 0.18 0.13
Matches are distributed among these distances:
29 1 0.00
30 20 0.03
31 1 0.00
33 9 0.01
34 76 0.10
35 477 0.62
36 157 0.20
37 5 0.01
38 2 0.00
39 2 0.00
41 1 0.00
42 1 0.00
43 1 0.00
44 2 0.00
45 1 0.00
46 6 0.01
47 10 0.01
48 1 0.00
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (35 bp):
GACTCATGATTTAATCCTGATCATTTTTATTTTCT
Found at i:3551154 original size:71 final size:70
Alignment explanation
Indices: 3551046--3551180 Score: 193
Period size: 71 Copynumber: 1.9 Consensus size: 70
3551036 ACGCGTTATT
* * *
3551046 TAATCCCTGTCATTTTTATTTTTTGACTCATGATTTAATC-TCATTTGTTTTCTTTTTTTGACTC
1 TAATCCCTGTCATTTTTATTTTTTGACTCATCATTTAATCTTCA-TTATTTTCATTTTTTGACTC
3551110 ATGGTA
65 ATGGTA
*
3551116 TAAT-CCTGGTCATTTTTCATTTTTTGACTCATCATTTAATCTTGATTATTTTCATTTTTTGACT
1 TAATCCCT-GTCATTTTT-ATTTTTTGACTCATCATTTAATCTTCATTATTTTCATTTTTTGACT
3551180 C
64 C
3551181 GTAGTTTAGT
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
69 3 0.05
70 13 0.22
71 40 0.69
72 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.09, T:0.56
Consensus pattern (70 bp):
TAATCCCTGTCATTTTTATTTTTTGACTCATCATTTAATCTTCATTATTTTCATTTTTTGACTCA
TGGTA
Found at i:3551156 original size:36 final size:36
Alignment explanation
Indices: 3551043--3589954 Score: 3395
Period size: 35 Copynumber: 1092.8 Consensus size: 36
3551033 ATGACGCGTT
3551043 ATTTAATCCCTG-TCATTTTT-ATTTTTTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3551078 ATTTAAT-CTCAT-TTGTTTTCTTTTTTTGACTCATG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * *
3551113 GTATAATCCTGGTCATTTTTCATTTTTTGACTCATC
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3551149 ATTTAATCTTGATTA-TTTTCATTTTTTGACTCGT-
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** *
3551183 AGTTTAGTCATGAT-GGTTTTCATTTTTCTCG-CTCAGG
1 A-TTTAATCCTGATCATTTTTCATTTTT-T-GACTCATG
* * * * *
3551220 GTTTAGT-GTCAGTCATTTTT-ATTTTCTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* ** * *
3551255 TTTTAATTTTGGTCGA--TTTCATTTTTTAACTCAT-
1 ATTTAATCCTGATC-ATTTTTCATTTTTTGACTCATG
* * *
3551289 ATTTTAATCTCTG-TTATTTTT-ATTTTTTGACTCGTA
1 A-TTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * *
3551325 ATTTAATTTCAGTAATTTTCATTATCGTTTTCATTTTTTGACTCGTG
1 ATTTAA--TC-CTGA---TC---AT--TTTTCATTTTTTGACTCATG
* * * *
3551372 GTTTAAT-TTCAATCA-TTTTCATTTTTTGACTTATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** **
3551407 ATTTAATTTTGATCATTTTT-ATTTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCA-TTTTTTGACTCATG
** * * *
3551443 ATTTAATATTGATC-GTTTTCATTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * * * *
3551478 ATTTAAT-CTCAGTTGTTTTT-AGTTTCT-AATCCACG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACT-CATG
* * *
3551513 GTTTAATCTTGATCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* **
3551548 GTTTAATCCT-ATCA-TTTTCATTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3551582 ATATAAT-CTGGGTCATTTTT-ATTCTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* ** * *
3551617 GTTTAATCCTGATTGTTTTT-GTTTTCAT-A-TCATG
1 ATTTAATCCTGATCATTTTTCATTTT-TTGACTCATG
*
3551651 ATTTAAT-CTCGATTGCA---TTCATTTTCTGACTCATG
1 ATTTAATCCT-GA-T-CATTTTTCATTTTTTGACTCATG
* *
3551686 GTTTAATTCC-CAT--TGTTTTCATTTTTTGACTCATG
1 ATTTAA-TCCTGATCAT-TTTTCATTTTTTGACTCATG
* *
3551721 ATTTAATTCTGGTCATTTTT-ATTTCTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* ** * * *
3551757 GTTTAATCCCCAT-AGTCTTCATTTTCTGAC-C-TG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * *
3551790 TGTTTAAT-CTCGATTGTTTTTCATTTTCTAACT-AGTG
1 -ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
* * * * * *
3551827 GTTTCAT-TTTAGTCATTTTT-ATTTTTTGGCTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3551862 GTGTAATCCCTG-T--TGTTTTAATTTTTTGACTCAT-
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGACTCATG
** * * *
3551896 AGTTTAATCCCAAT--TGTTTTCAGTTTTAGACTCATT
1 A-TTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* ** *
3551932 ATTTCATGTTGGTCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
*
3551967 ATTTAAGT-CTAGAT--GTTTTCATTTTTTGACT-AGTG
1 ATTTAA-TCCT-GATCATTTTTCATTTTTTGACTCA-TG
* * * ** *
3552002 GTTTAATCC-CAGTTA-TTTTCATTTTCGGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * **
3552037 ATTTAGTTAC-AATCGTTTTT-ATTTCTTTGACTTGTG
1 ATTTA-ATCCTGATCATTTTTCATTT-TTTGACTCATG
* *
3552073 ATTTAATGCCAG-TCA-TTTTCATTTTTTCACTCATTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCA-TG
* * ** *
3552109 -TTTAGTTTCTG-TTGTTTTTGC--TTTCTGACTCATG
1 ATTTA-ATCCTGATCATTTTT-CATTTTTTGACTCATG
* **
3552143 GTTTAAT-CTCGATCA-TTTTCACTTTTTT-ACTTGTG
1 ATTTAATCCT-GATCATTTTTCA-TTTTTTGACTCATG
* ** * * *
3552178 GTTTAATCCTCG-TTGTTTTACATTTTCTGACTTATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3552214 CTTTAATCCCT-ATTA-TTTTCATTTTCTGATGCATTATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGA--C-TCATG
*
3552252 ATTT--T--T-AT--TTTTT-ATTTTCTGA-TGCATTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACT-CA---TG
* **
3552283 ATTTTTAATCCCTG-TCATTTTT-ATTTTTTAACTTGTG
1 A--TTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3552320 ATTTAATCTTGGTCA-TTTTCATTTTTTAACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * **
3552355 ATTTAATCTTGGTCA-TTTTCATTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** * * * * *
3552390 GTATAATTGTGATCATTTTTTAGTTTCTAACTCCTCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
** * * *
3552427 -TTTAATCCCCAATCA-CTTTCATTGTCTGACTCATCG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCAT-G
* * ** * *
3552463 -CTTAAT-CTTAGT-GGTTTTCATTTTCCTG-CTCAAG
1 ATTTAATCCTGA-TCATTTTTCATTTT-TTGACTCATG
* * * * *
3552497 GTTTAGTCCT-AGTCA-TTTTCATTTTCTAACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3552532 CTTTAATTCC-GATCA-TTTTCATTTTTTAACTCATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * * *
3552567 CTTTCATCCCGATCA-TTTTCATTTTCTAACTCGTA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3552602 ATTTAATTTCGATAATTTTCATTATATTATCATTTTTTGACTTATG
1 ATTTAA--TC-CTGA---TCA-T-T-TT-TCATTTTTTGACTCATG
* * * *
3552648 GTTTAAT-CTCAATC-GTTTTCATTTTTTGACTTATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * * *
3552683 ATTTAATTTTGATCATTTTT-ATTTCTCTGAAAT-GTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTG-ACTCATG
* *
3552719 ATTTAAT-ATCGATCA-TTTTCATTTTTTTACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * *
3552754 ATTTAATCTCAGTTGC--TTTTCATTTTCTAACCCATG
1 ATTTAATC-CTGAT-CATTTTTCATTTTTTGACTCATG
* * * * *
3552790 GTTTAATCC-CAGTCA-TTTTCATTTTCTAACCCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3552825 ATTTAATCTTGGT--TGTTTTCATTTTTTGACTCATG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * * * * *
3552860 ATTCAATTCAGGTCATTTTT-ATTTCTTAATTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3552895 GTTTGAT-CTCGATCATTTTT-ATTTTTTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* *
3552930 ATTTAAT-CTCGAT--TGCTTTCATTTTTTGACTCGTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
** * *
3552965 GCTTAATTCC-CATCA-TTTTCATTTTTTGACTCGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3553000 ATTTAATTCTGGTCATTTTT-ATTTCTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * *
3553036 GTTGAATCCCTG-T--TGTCTGCATTTTTTGACTCATG
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGACTCATG
* * * *
3553071 GTTTAATCAC-GATCATTTTTCATTTTCTAAAT-AGTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCA-TG
* * * * * * *
3553107 GTTTCATCTTGGTCA-TTTTCATTTTCTAAAT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * * * *
3553142 GTTTCATCTTGGTCA-TTTTCATTTTTTGACTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3553177 GTTTGATCCTG-TCA-TTTTAATTTTTTTGATTCGTG
1 ATTTAATCCTGATCATTTTTCA-TTTTTTGACTCATG
* * * ** * **
3553212 GTGTAATCCTGATC-GTTTTCA-AATTAGACTCGCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3553246 ATTTAAT-TTCAGTCATTTTT-ATTTTTTTGACTCGTA
1 ATTTAATCCTGA-TCATTTTTCA-TTTTTTGACTCATG
* *
3553282 ATTTGAT-TTCGATCA-TTTTCATTTTTTGACT-AGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
* * * * *
3553317 GTTTAAT-CTCAATGA-TTTTCATTTTTTGACTCTTA
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3553352 ATTTAGT-TTCGATCATTTTT-ATTTCTTTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* * *
3553388 ATTTAATGCT-AGTTA-TTTTCATTTTTTTACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** * * * *
3553423 ATTTAATTTTGACCATTTTT-GTTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * **
3553458 CTTTAATCTTTG-TCA-TTTTCATTTTTTGACTTGTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* **
3553493 GTTTAATCCT-AGT-GGTTTTCATTTTTCTCG-CTCA-G
1 ATTTAATCCTGA-TCATTTTTCATTTTT-T-GACTCATG
* * * * *
3553528 AGTTTAGTCC-CAGTCATTTTT-ACTTTCTGACTCGTG
1 A-TTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3553564 TTTTAAT--T--TCGATTGTTTCA-----TGACACGTT
1 ATTTAATCCTGATC-ATT-TTTCATTTTTTGACTCATG
* * * *
3553593 ATTTAATACATG-TCTTTTTTTATTTTTTGACTTATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
*
3553629 ATTTAAT-CTCGTTCA--TTT--TTTTTT-ACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3553660 GTATAATTCTGATCATTTTTCATTTTTTGACTCATC
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* **
3553696 ATTTAAT-CTCGATC-GTTTTCATTTTTTGACTTTTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * ** *
3553731 GTTTAGT-CTTAGT-GGTTTTCATTTTTCTCG-CTCAAG
1 ATTTAATCCTGA-TCATTTTTCATTTTT-T-GACTCATG
* * * * *
3553767 GTTTAGTCC-CAGCCATTTTT-ATTTTTTGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * *
3553802 CTTTAATTCT-AGTC-GTTTTCATTTTTT-AAT-TTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
*
3553835 TATTTTAAT-CTCGATCA-TTTTCATTTTCTGACTCGTAATTTAG
1 -A-TTTAATCCT-GATCATTTTTCATTTTTTGACTC---A--T-G
* ** * *
3553878 TTTTGGTAATTTTCATCATCATTTTCATTTTTTGACTCGTG
1 -ATT--TAATCCTGATCAT--TTTTCATTTTTTGACTCATG
* * *
3553919 ATTTAAAT-TTGATCGTTTTT-ATTTTCTGACTCATG
1 ATTT-AATCCTGATCATTTTTCATTTTTTGACTCATG
** * **
3553954 ATTTAATTTTAATCATTTTT-ATTTTTTGGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTT-GACTCATG
** * * *
3553990 ATTTAATATTGATC-GTTTTCATTTTGTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3554025 ATTTAAT-C---TCAGTTGCTTTCATTCTCTGACTCATG
1 ATTTAATCCTGATCA-TT--TTTCATTTTTTGACTCATG
** *
3554060 GCTTAATTCC-CATCA-TTTTCATTTTTTGACTCATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3554095 ATTTAATTCTGGTTATTTTT-ATTTCTCTGATTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
*
3554131 GTTTAATCCCT-AT--TGTTTTCATTTTTTGACTCATG
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * *
3554166 GTTTAATCCTAATCATTTTTCATTTTCTAACT-AGTC
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * * * **
3554202 ATTTCAT-CTCGGTCA-TTTTCATTTTCTGAGTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3554237 GTTTAATCCCT-ATCA-TTTTAATTTTTTGATTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * ** * * * **
3554272 GTATAATCCCAATC-GTTTTCAATTTTAGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
*
3554307 ATTTAAT-TTCGATCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* *
3554342 ATTTAAT-TTCGATCA-TTTTCATTTTTTGACTAATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3554377 GTTTAATCTTGATGA-TTTTCATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** *
3554412 ATTTAGTTTTGATCATTTTT-ATTTCTTTGACTTATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * *
3554448 ATTTAGTGCTAATCA-TTTTCATTTTTTGACTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** *
3554483 ATTTAATTTTGGT--TGTTTTCATTTTTTGACTCATG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * *
3554518 CTTTAATCTCTG-TCA-TTTTCACTTTTTAACTTATG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* ** * * *
3554553 GTTTAATCCTTG-TTGTTTTACATTTTCTGACTCGTG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* * *
3554589 CTTTAATCCTTATC-GTTTTCA--TTTT---T--TG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** *
3554617 -TTTAATCCTTG-TCATTTTT-ATTTTTTGATTTGTA
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* *
3554651 ATTTAATCCTGGTCA-TTTTCATTTTTT-AATGCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACT-CATG
* * * ** ** *
3554686 GTATAATCCTGGTTGTTTTTCATTTTTTGACTTGTC
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3554722 ATTTTAATCCTGAT--TGCTTTCATTTTCTGACTCATG
1 A-TTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * * *
3554758 GTTTAATCCT-AGTGATTTGT-ATTTTCTCACTCAGG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3554793 GTTTAGTCC-CAGTC-TTTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* ** * * * * **
3554828 CTTTAATTATGGTC-GTTTTAATTTTTTTAACTTGTG
1 ATTTAATCCTGATCATTTTTCA-TTTTTTGACTCATG
* * * *
3554864 TTTTAAT-CTCAGTCA-TTTTCATTTTTTGACTCGTA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * * **
3554899 ATTTAATTTCAGTAATTTTCATTATAATTTTTATTTTCTAACTTGTG
1 ATTTAA--TC-CTGA---TC---AT--TTTTCATTTTTTGACTCATG
* * * *
3554946 GTTTAATCTTGTTCA-TTTTCA-TTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
**
3554980 ATTTAATTTTGATCATTTTT-ATTTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTT-TGACTCATG
* * * * *
3555016 ATTTAAT-CTCAGTCA-TTTTCATTTTCTAACCCA-C
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3555050 AGTTTAATCC-CA--ATTGTTTCATTTTCTGACTCATG
1 A-TTTAATCCTGATCATT-TTTCATTTTTTGACTCATG
* * *
3555085 ATTTAATCC-AAGTCATTTTT-ATTTTCTAACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3555120 GTTTAATGCC-AATCATTTTT-ATTTTTTGACTTATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
** * *
3555155 ATTTAAT-CTCGATC-GCTTTCATTTTCTAACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3555190 GTTTAATTCC-CATCATTTTTCATTTTTTGACTCGTA
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
** *
3555226 ATTT-ATTTTTAGTCATTTTT-ATTTCTTTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTT-TTTGACTCATG
* *
3555262 GTTTAATCC---TCATTGTCTTCATTTTCTGACTCATG
1 ATTTAATCCTGATCATT-T-TTCATTTTTTGACTCATG
* * * *
3555297 GTTTAAT-CTCGGT-AGTTCTTCATTTTCTGACT-A-G
1 ATTTAATCCT-GATCA-TTTTTCATTTTTTGACTCATG
* * **
3555331 -TTTCAT-CTCGAT--TGTTTTCATTGTTTGACTTGTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* * * *
3555365 GTTTAATCCCT-ATCA-TTTTAAATTTCT-ACCTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGA-CTCATG
* * * *
3555400 ATTTGATCCTGATC-GTTTTCAGTTTTAGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * * **
3555435 ATTTAATTTTGATCA--TTT--TTTTCTAACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3555467 ATTTAAT-TTAAGTC-GTTTTCATTTTTTGACT-AGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCA-TG
* * * **
3555502 GTTTAATCTTGGTCA-TTTTCATTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * ** * *
3555537 ATTTAGT-TTCAGTTGTTTTT-ATTTCTTTGGCTCATA
1 ATTTAATCCTGA-TCATTTTTCATTT-TTTGACTCATG
** *
3555573 ATTTAAAGCTGATCA-TTTTCATTTTTTGACTCATC
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3555608 ATTTAATTCTGGTCA-TTTTCATTTTCTGAATTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** *
3555643 CTTTAAT-CTTAGTCA-TTTTCACATTTTGACTTATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * * * *
3555678 GTTTAGTCCTCATTC-TTTTACATTTTCTAACTCGCT-
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTC-ATG
* *
3555714 CTTTAATCCCT-AT-AGTTTTCATTTTTTGA-TGCATTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACT-CA-TG
*
3555750 -TTTAATCCCT-ATCATTTTT-ATTTTTTGACTCAAG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* *
3555784 ATTTAATCCTGGTCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3555819 GTATAATCCTAATCATTTTTCATTTATTGACTCATTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * * *
3555856 -TTTAAT-CTCGGT--TGCTTTCATTTTCTAACTCATG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
** * * *
3555890 GCTTAATCCT-AGTC-GTTTTCATTTTCTTG-CTTAGG
1 ATTTAATCCTGA-TCATTTTTCATTTT-TTGACTCATG
* * * * * * *
3555925 GTTTAGTGCCAG-TCA-TTTTCATCTTCTAACTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* ** * * * *
3555960 CTTTAATTTTGGTC-GTTTTCA-TTTTTAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3555994 TTTTAATCCAG-T-AATTTTCA--TTTAGACTCATA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3556026 ATTTAGTTCTAATAATTTCATTATCATTTTTATTTTCTGACTAATG
1 ATTTAATCCTGATCA-TT--TT-TCA----T-TTTT-TGACTCATG
* * * * * *
3556072 GTTTAATCTTGATC-GTTTTAATTTTTTGACTCCTA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3556107 ATTTGAT-TTCGATCA-TTTTCGTTTCTCTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
** * *
3556143 ATTTAA-CACCAAT-ATTTTCCATTTTTTGACTCGTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3556178 ATTTAAT-CTCGGT-AGTTTTCATTTTCTAACCCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3556213 GTTTAATCC-CAGT-AATTTTCATTTTTTGAACT-ATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTG-ACTCATG
* * ** * **
3556248 GTTTAATCTTGGGCA-TTTTAATTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3556283 ATTTAATCTTGGT--TGTTTCCATTTTTTGACTTGTG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * ** **
3556318 GTATAATCCTGGTTGTTTTT-ATTTTCTT-ACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTT-TTGACTCATG
* *
3556353 ATTTAAT-CTCAGT--TGTTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGACTCATG
* * * * *
3556388 GTTTAATTCC-CATCA-TTTTCATTTTATGACTCCTA
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3556423 ATTTAATTCTGGTCATTTTT-ATTCCTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATT-TTTTGACTCATG
* * *
3556459 GTTTAATCTCCG-T--TGTTTTCATTTTTTAACTCATG
1 ATTTAATC-CTGATCAT-TTTTCATTTTTTGACTCATG
* * * *
3556494 GTTTAATCGTGATCTTTTTTCATTTTTTGA-TTAGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * * * * *
3556530 GTTTCAT-CTCAATCGTTTTT-ATTTTCTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * **
3556565 GTTTAATCTCT-ATCA-TTTTAATTTTTTGACTTGTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3556600 -TTTAATCTTGATCATTTTT-AATTTTAGTCTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3556634 ATTTAAT-TTCGATCATTTTT-ATTTTCTAACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * *
3556669 ATTTAAATCC-AATC-GTTTTCAATTTTTGACTAAGG
1 ATTT-AATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3556704 GTTTAATCCTGGTCA-TTTTCATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * ** *
3556739 ATTTAGTTCTGAACGTTTTT-ATTTCTTTGACTTGTA
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * *
3556775 ATTTAAT-ATCGATCA-TTTTCATTCTTTGACTCGTC
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * *
3556810 ATTTAATTCTGGTCATTTTT-GTTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3556845 GTTTAATCTTGATCA-TTTTCACTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** * *
3556880 GTTTAATCCTTATTGTTTTACATTTTTTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
*
3556916 GTTTAATCCCT-ATCA-TTTTCATTTTTTGA-TGCATTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACT-CA-TG
3556952 -TTTAATCCAT-ATCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* *
3556986 ATTTAATCCCGAT--TGTTTTCATTTTTTGACTCGTCG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCAT-G
* * * * *
3557022 -TATAATCC-CAGTCTTTTTTCATTTTTTGACTCGTC
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** * * *
3557057 ATTTAATCCTGATC-GCTTTCATGTTTAGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * ** * * * *
3557092 GCTTAATCCTGGT-GGTTTTCATTTTCTCG-TTTAGG
1 ATTTAATCCTGATCATTTTTCATTTT-TTGACTCATG
* * * * * *
3557127 GTTTAGTCCT-AGTCA-TTTTCATTTTCTAACCCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * ** * *
3557162 CTTTAATTCAGGCCA-TTTTCATTTTTTAACTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * * *
3557197 TTTTAAGCC-CAGTCA-TTTTCATTTTCTAACTCTTA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3557232 ATTTAATTTCAATAATTTTCATTATCATTTTCATTTTCTAACTCATG
1 ATTTAA--TC-CTGA---TC---AT--TTTTCATTTTTTGACTCATG
*
3557279 GTTTAATCTCTG-TCA-TTTTCATTTTTTGACTCATG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3557314 ATTTAAT-TTCAATCATTTTT-ATTTCTCTAACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* * * * *
3557350 ATTTAA-CATCGATC-GTTTCCATTTTCTAACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * *
3557385 ATTTAATCTTGGTCA-TTTTCGTTTTCTAACCCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3557420 ATTTAATCCT-AGTC-GTTTTCATTTTCTGAC-CAATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTC-ATG
* ** * * **
3557455 GTTTAATCCCAATC-GTTTTCATTTTCTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3557490 ATTTAAT-CTGGGTCATTTTT-ATTTTCTAACCCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3557525 GTTTAATCC-CAGTCATTTTT-ATTTTCTAACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* ** *
3557560 ATTTAATCTTGA-CAGCTTTAATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * **
3557595 GTTTAATTCC-AATCA-TTTTAATTTTCTGAATTGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
**
3557630 ATTTAATTTTGATCATTTTT-ATTTCTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * *
3557666 GTTTAATCCTCG-T--TGTCTTCATTTTCTGACTCTTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* * ** * **
3557701 GTTTAATACTGATTGTTTTTCATTTTCT-A--GGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3557734 GTTTCATCTTGATCATTTTT-ATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3557769 CTTTAATCCCTG-TCA-TTTTAATTTTTTGACTCAAG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * * *
3557804 GTTTAA-CTTTAGT--TGTTTTCAGTTTTAGACTCGTG
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGACTCATG
* * * *
3557839 ATTTAAAT--TTAGTCACTTTT-ATTTTTTGATTCGTG
1 ATTT-AATCCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3557874 ATTTAATTCCAG-TC-GTTTTCATTTTTTGACT-AGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCA-TG
* * *
3557909 GTTTAATCCTAATCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** *
3557944 ATTTAGTTTTGGTCATTTTT-ATTTCTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * *
3557980 ATTTAATGCC-AATCA-TTTTCATTTTTTGACTCGTC
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3558015 ATTTAATTCCAG-TCA-TTTTCCTTTTTTAACTTGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3558050 GTTTAATCTTGGTCA-TTTTCACTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3558085 GTTTAATCCCT-ATTATTTTACATTTTCTGACTCATC
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3558121 CTTTAATCCCT-ATC-GTTTTCATTTTCT-AATGCGTTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACT-C-ATG
* **
3558157 -TTTAATCCCTG-TTATTTTT-ATTTTTTGACTTGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
*
3558191 ATTTAAACAC-GATCA-TTTTCATTTTTTGACT--TG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3558224 TAGTATAATCCTGGTCATTTTTCATTTTCTAACTCGTCG
1 -A-TTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
* *
3558263 -TTTAATTCTGAT-AGTTTTCATTTCTTT--CTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
** * * ** * *
3558296 GCTTAATCTTGGT-GGTTTTCATTTTCTTG-CTTAAG
1 ATTTAATCCTGATCATTTTTCATTTT-TTGACTCATG
* * * * **
3558331 GTTTAGTCCT-AGTCA-TTTTCATTTTCTAACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3558366 CTTTAAT-TTCGATCA-TTTTCA-TTTTTAACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3558400 TTTTAAT-CTCGATCA-TTTTCATTTTTTGACTCTTA
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* *
3558435 ATTTAATTCTGATAATTTTCATTATCGTTTTCA-TTTTTAACTCATG
1 ATTTAATCCTG---A---TC---AT--TTTTCATTTTTTGACTCATG
* *
3558481 GTTTAAT-CTCGATCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* **
3558516 ATTTAAT-TTCGATCATTTTT-ATTTCTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* * **
3558552 ATTTAA-CACTGAT--TTTTCCATTTTCTGACTTGTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * *
3558586 ATTTAAT-CTTAGTCA-TTTTCATTTTTTAACCCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * *
3558621 GTTTAATCC-CAGTCA-TTTTCATTTTCTGACCCACG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3558656 TTTTAAT-CTCGATC-GTTTTCATTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* *
3558691 ATTTAATCCCTG-TCGTTTCT-ATTTTTTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3558726 GTTTTAT-CTAAATCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * **
3558761 ATTTAAT-TTCAATCA-TTTTCATTTTCTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3558796 GTTTAATTCC-CATCA-TTTTCATTTTCTAACTCATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3558831 ATTTGATTCTTG-TCATTTTT-AGTTCTTTGACTCCTG
1 ATTT-AATCCTGATCATTTTTCA-TTTTTTGACTCATG
* * * * *
3558867 GTTTAATCCCCG-TTATCTTT--TTTTTTAACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3558901 GTTTAATTGC-GATC-GTTTTCATTTTCTGACTGGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3558936 GTTTCAT-CTAAGCCA-TTTTCATTTTTTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3558971 GTTTAATCCCTG-TC-GTTTTAATTTTTTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3559006 -TTTAATCC-CATTCATTTTT-AGTTTTAGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** * **
3559040 ATTTAATTTTGGTCATTTTT-ATTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
*
3559075 ATTTAATTCTGATCA-TTTTCATTTTTTGACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * * * *
3559110 GTTTAATCCCTG-CCATTTTT-ATTTTCTAACTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * ** *
3559145 GTTTAAAT-CTGATCA-TTTTAATTTTTTAACAAAGG
1 ATTT-AATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3559180 ATTTAAT-CTCGGTCA-TTTTCA-ATTTTAACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
**
3559214 ATTTAATACC-GATCA-TTTTCATTTTTTGACTTGTCG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCAT-G
** * * * *
3559250 -TTTAATTTTGGTCATTTTT-GTTTTGTAACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * *
3559284 ATTTAATCTTGGTCA-TTTTCA--CTTTGACT--TG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * *
3559315 TAGTTTAATCC-CAGTTGTTTTACATTTTTCGACTCATG
1 -A-TTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * **
3559353 GTTTAATCCCTG-TCA-TTTTCATTTTCTAACGTGTTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGAC-TCATG
*
3559389 -TTTAATCCTTG-TCATTTTT-ATTTTTTGACTTATG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
*
3559423 ATTTAAT-CTCGA-C-TGTTTTCATTTTTTGACTCGTTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTC-ATG
* * *
3559459 -TATAATCAC-GATCATTTTTCATTTTTTGGCTTATTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCA-TG
* ** * * **
3559495 -TTCAATCCCAATCA-CTTTCATTTTCT-ATCTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGA-CTCATG
** ** * *
3559529 GCTTAATCCT-AGT-GGTTTTCATTTTCTT-ACTTAGG
1 ATTTAATCCTGA-TCATTTTTCATTTT-TTGACTCATG
* * * * * *
3559564 GTTTAGTCC-CATCCA-TTTTCGTTTTCTAACTCATG
1 ATTTAATCCTGAT-CATTTTTCATTTTTTGACTCATG
* * *
3559599 CTTTAAT-TTCGATCA-TTTTCATTTTTT-ACCTCATC
1 ATTTAATCCT-GATCATTTTTCATTTTTTGA-CTCATG
* * * * * *
3559634 TTTTAAT-CTCAGTCA-TTTTCATTTTCTAACTGATA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** *
3559669 ATTTAATTTTGATAATTTTCATTATCATTTTTGCTTTTTGACTCATG
1 ATTTAATCCTGATCA--TT--TT-TCA----T--TTTTTGACTCATG
* * *
3559716 GTTTAAT-CTCGATCGTTTTT-ATTTTTTAACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * * *
3559751 ATTTAATTTTAATCATTTTT-ATTTCTCTAACAT-ATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGAC-TCATG
* * *
3559787 ATTTAA--C--ACCAATTGTTTCCATTTTCTGACTCTTG
1 ATTTAATCCTGATC-ATT-TTT-CATTTTTTGACTCATG
* * * * * *
3559822 ATTTAATCTTGGTCA-TTTTCATTTTCTAACCCACG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3559857 GTTTAATCC-CAGTCA-TTTTCATTTTCTGACCCAT-
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3559891 AGTATAAT-TTCGATC-GTTTTCATTTTTTGACTCATG
1 A-TTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * **
3559927 ATTTAATCAATG-TCATTTCT-ATTTTTTGACTTGTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3559962 GTTTAAT-TTCATTCATTTTT-ATTTTATGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** * *
3559997 ATTTAAT-CTCGATC-GCTTTCATTTTCTAACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3560032 GTTTAATTCC-CATCA-TTTTAATTTTTTGACTCGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
** * * * **
3560067 ATTTAATTTTGGTCATTTTTC-TTTCTCTAACTTGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* *
3560103 GTTTAATCCTCG-T--TGTTTTCATTTTCTGACTCATG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* ** * *
3560138 GTTTAAT-CTCGATTGTTTTTAATTTTATGACT-AGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
* * * **
3560174 GTTTCAT-CTCATTCATTTTT-ATTTTTTGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3560209 CTTTAATCCCT-ATC-GTTTTAATTTTTTGACTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3560244 ATTTAAT-CTAAGT--TGTTTTCAGTTTTAGACTCGTG
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGACTCATG
** * * *
3560279 ATTTAATTTTGAACAATTTT-ATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** *
3560314 ATTTAATTCT-AGTCA-TTTTCATTTACTGA-TTAGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCA-TG
* *
3560349 GTTTAAT-CTCGGTCA-TTTTCATTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3560384 ATTTAGT-TTCGATCATTTTT-ATTTCTTTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* * ** *
3560420 ATTTAAT-GTCGATCA-TTTTCATTTTTTGCCTTGTT
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * *
3560455 ATTTAAT-TTCAGTCA-TTGTCATTTTCTGATTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3560490 GTTTAATCTTGATTA-TTTTCACTTTTTGACT--TG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3560523 TAGTTTAATCCCT-ATTATTTTACATATTCTGACTCGTG
1 -A-TTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3560561 CTTTTATCCTTG-TCATTTTT-ATTTTCTAACACATTG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCA-TG
* * *
3560597 -TTTAAT-C----C--TTGTCATTTTTTAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3560625 ATTTAAT-CTCGATCATTTTCCTTTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3560661 GTATAATTCCAG-TCATTTTTCATTTTTTGACTCATTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCA-TG
* ** * * * *
3560698 -TTTAATCCTTATC-GCTTTCCTTTTCTGATTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * * *
3560732 GTTTAATCCTGAT-GGTTTTCATTTTCTCG-TTCAGG
1 ATTTAATCCTGATCATTTTTCATTTT-TTGACTCATG
* * ** * * *
3560767 GTTTAGTCCCAATC-GTTTTCATTTGTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * * *
3560802 CTTTAATTATGGT--TGTTTTCATTTTCT-ACCTCGTG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGA-CTCATG
* * * * *
3560837 TTTTAATCTTGGTCA-TTTTCATTTTCTGACTCATA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
*
3560872 ATTTAAT-TTAGGCAATTTTCATTATTGTTTTCATTTTTTGACT-AGTG
1 ATTTAATCCT--G--A---TC---A-T-TTTTCATTTTTTGACTCA-TG
* * * * *
3560919 GTTTAATCTTAATC-GTTTTCATTTTCTT-ACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTT-TTGACTCATG
* * * * * *
3560954 ATTTAAACTTGGT--TGTTTTCATTTTCTAACCCATG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * *
3560989 GTTTAATCCCGGTCA-TTTTCATTTTCTGACAT-GTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGAC-TCATG
* * * * **
3561024 ATTTAATTCGGGTCATTTTT-ATTTTTTGATTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3561059 GTTTAATCCTGATCATTTTT-ATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * ** *
3561094 CTTTAATTTCGGA-C-GCTTTCA-TTTCTGACTCATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3561128 GTTTAATTCC-CATCA-TTTTCATTTTCT-ATCTCATT
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGA-CTCATG
* * * *
3561163 ATTTAATTCTGGTCATTTTT-ATTTCTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * *
3561199 GTTTAATCC---CCATTGTCTTCATTTTCTGACTCGTG
1 ATTTAATCCTGATCATT-T-TTCATTTTTTGACTCATG
* * * * * **
3561234 GTTTAATCTTGATCATTTTTTAATTTCTGACTGGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3561270 GTTTCAT-CTCGATCA-TTTTCATTCTCTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3561305 GTTTAATTCTTG-T--TGTTTTAATTTTTTGGCTCATG
1 ATTTAA-TCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * * **
3561340 GTTTAATCC-CAGTCGTTTTT-AGTTTTAGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** * * *
3561375 ATTTAATTTTTATCATTTTT-ATTTTCTAACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * * *
3561410 ATTTAAT-ATCAATC-GTTTTCATTTTTAGACT-AGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
* *
3561445 GTTTAATCTTGATCA-TTTTCATTTTCTT-ACTCATG
1 ATTTAATCCTGATCATTTTTCATTTT-TTGACTCATG
* * * **
3561480 ATTTAGTTCC-AATCATTTTT-ATCTCTTTGACTTGTG
1 ATTTA-ATCCTGATCATTTTTCAT-TTTTTGACTCATG
** * **
3561516 ATTTAATGTTGATTATTTTT-ATTTTTT-ACTTGTCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
* * * *
3561551 -TTTAAT-TTCGATAATTTTT-GTTTTTTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * *
3561585 GTTTAATCTTGGTTA-TTTTCACTTTTTT-ACTTATG
1 ATTTAATCCTGATCATTTTTCA-TTTTTTGACTCATG
* * ** * *
3561620 GTTTAATCCTCATTGTTTTACATTTTTTGACTCGT-
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * *
3561655 ACTTTAATCTTTATCA-GTTTCATTTTCTAACACATTG
1 A-TTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* *
3561692 -TTTAATCCTTG-TCACTTTT-ATTTTTTAACTCATG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
*
3561726 ATTTAAT-CTCAGT--TGTTTTCATTTTTTGACTCATG
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGACTCATG
* * *
3561761 GTATAATCCTGATCATTTTTTATTTTTTGACTCATCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
** *** *
3561798 -TTTAATTGTGATTGCTTTTCATTTTCTGACTCATGG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
* ** * * *
3561834 TTTTAATCCT-AGT-GGTTTTCAGTTTCTCG-CAT-AGG
1 ATTTAATCCTGA-TCATTTTTCA-TTTTTTGAC-TCATG
* * ** * * * **
3561869 GTTTAGTCCCAATC-GTTTTCATTTTCTGATTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3561904 CTTTAATTCCAG-TCA-TTTTCATGTTTTAACTCAT-
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * ** *
3561938 CTTTAATCC-CAGTCA-TTTTCATTTTTTGTCTTGTA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
**
3561973 ATTTAATTATGGTTATTTTAATTATCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCT-G-----------ATCATTTTTCATTTTTTGACTCATG
* * * * **
3562020 GTTTAAT-CTCGATCA-TTTCCATTTTCTGATTGGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * * * ** **
3562055 ATTTTTATGTCT-TTGACTTGTGATTTAAT-ACAGATAG
1 A-TTTAAT-CCTGATCATTTTTCATTTTTTGACTCAT-G
* * ** * * ** * *
3562092 TTTTCATTTTATGACTCATAATTTAATCTTAGTCATTTTCAT-
1 ATTT-A-ATCCTGA-TCAT-TTTTCAT-TTTTTGA--CTCATG
* * * ** *
3562134 TTTCTAACCCATGGT--TTAATCCCAGTGGTTTTCATTTTCTGACCCATG
1 ATT-TAATCC-TGATCATT--TTTCA----TTTT-----T-TGACTCATG
* * * * * **
3562182 GTTTAATCTTGGTCA-TTGTCATTTTCTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3562217 ATTTAATTCGGATCATTTTT-ATTTTTTGACTCACG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3562252 GTTTAATCTTGGTCA---TT--TTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3562283 ATTTCAT-CTCGGTCA-CTTTCATTTTTTGAGTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3562318 GTTTAATTCC-CATCA-TTTTCATTTTTGGACTCATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
** * *
3562353 ATTTAATTTTGGTTATTTTT-ATTTCTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* ** * *
3562389 ATTTAATCCCCG-TTGTCTTT-ATTTTCTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* **
3562424 GTTTAATCCTGATCATTTTT-ATTTTTTGACTGGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3562459 GTTTCAT-CTCGGTC-GTTTTCATTTTTTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * *
3562494 GTTTAATCCCT-ATC-GTTTTAATTTTCTAACT--TG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3562527 TAGTTTAAT-TTCAGTCATTTTTCAGTTTTAGACTCATG
1 -A-TTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** **
3562565 ATTTAATTTTCG-TCATTTTT-ATTTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
*
3562600 ATTTAATTCC-GATC-GTTTTCATTTTTTGACT-AGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCA-TG
* *
3562635 ATTTAATCCTGGTCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3562670 ATTTAGT-TTCGATCATTTTT-ATTTCTTTAACTCATG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* *
3562706 ATTTTAATGCCAG-TCA-TTTTCATTTTTTGACTCGTTG
1 A-TTTAAT-CCTGATCATTTTTCATTTTTTGACTC-ATG
** * **
3562743 -TTTAATTTTGGTCA-TTTTCATTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3562777 GTTTAAT-CTTAGTCA-TTTTCAGTTTTTGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * ** ** * *
3562812 GTTTTATCCCCATTGTTTTACATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3562848 CTTTAATCCCT-ATC-GTTTTCATTTTCT-A-ACATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* *
3562881 TTTTAATCTCTG-TCATTTTT-ATTTTGTGACTCATG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * *
3562916 ATTTAATCTTGGTCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3562951 GTATAATCCCGATCATTTTTCATTTTTTGACTCATC
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3562987 ATTTAATCCTAATCA-TTTTCATTTTCTGACTCGTT
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3563022 ATTTAATCCT-A-CTAGTTTTCATTTTCTCACACAGG
1 ATTTAATCCTGATC-ATTTTTCATTTTTTGACTCATG
* * * * * *
3563057 GTTTAGTCCT-AGTC-GTTTTCATTTTCTGAATCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3563092 CTTTAATTCT-AGTCATTTTT-A-TTTTTAACTAATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3563126 TTTTAATACCAG-TCA-TTTTCATTTTCTGACTCATA
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
** * *
3563161 ATTTAATTTTGGTAATTTTCATTATCATTATCATTTTCTGACTCGTG
1 ATTTAATCCT-G--A---TCA-T-T--TT-TCATTTTTTGACTCATG
* * *
3563208 GTTTAAT-CTCGATC-CTTTTCATTTTTTGACTCATA
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3563243 ATTTAAT-TTCGATCATTTTT-ATTTCTCTGACTTATG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* * *
3563279 -TTTCAATACC-AATCA-TTTTCATTTTCTGACACATG
1 ATTT-AAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3563314 ATTTAAT-CTCAGTCA-TTTTCATTTTCTAACCCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3563349 GTTTAATCCCGATCATTTTT-ATTTTTTGAC-CTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTC-ATG
* *
3563384 GTTTAATCCT-AGT--TGTTTTCATTTTCTGACTCATG
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGACTCATG
* * * * *
3563419 GTTTAATCCCGATCGTTTTT-ATTTTCTGACTAATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3563454 AATTAAT-CTCGAT--TGCTTTCATTTTCTGACTCATTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCA-TG
* * *
3563490 -TTTAATTCC-CATCA-TTTTCATTTTCTAACTCATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3563524 ATTTAATTCTGGTAATTTTT--TTCATTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3563558 GTTTAATCCCTG-T-GTTCTTCATTTTTTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* *
3563593 GTTTAATCCCTG-TCA-TTTT-AATTTTTGACTCATTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCA-TG
* * *
3563628 -TTTAATCC-CAGT--TGTTTTCAGTTTTAGACTCATG
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGACTCATG
** * * *
3563662 ATTTAATTTTGGTCATTTTT-A-TTTTCGAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTG-ACTCATG
** * * *
3563697 ATTTAATTTTGGT-AATTTTCATTTTTTGACTAATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3563732 GTTTAATCCT-AGT--TGTTTCTATTTTCTGACTTGA-G
1 ATTTAATCCTGA-TCATTTTTC-ATTTTTTGAC-TCATG
* * * * * *
3563767 ATTTAGT-TTCAATCGTTTTTC-TTTCTTCGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* *
3563803 ACTTAATGCC-GGTCA-TTTTCATTTTTTGACT-AGTCG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCA-T-G
**
3563839 -TTTAATTTTGATCA-TTTTCATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * *
3563873 GTTTAATTTTGATCA-TTTTCACTTTTTGACTTATGG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
* * * * * *
3563909 TTTTAATCCTCATTACTTTACATTTTTTGGCTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3563945 TTTTAATCCCT-AT--TGTTTTCATTTTCTGA-TGCATTG
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGACT-CA-TG
* *
3563981 -TTTAATTCCTG-TCATTTTT-ACTTTTTGAATCATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
*
3564015 ATTTAATCCTGGTCA-TTTTCATTTTTTGACAT-ATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGAC-TCATG
* * ** * * *
3564050 GTATAATCCCTG-TTGTTTTTCATTTTTTGATTTATC
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* *
3564086 ATTTAATCCTGAT--TGCTTTCATCCTTTT-ACTCATG
1 ATTTAATCCTGATCAT-TTTTCAT-TTTTTGACTCATG
* * * ** * * *
3564121 GTTTAATCTTTAT-GGTTTTCATTTTCTCACTCAGG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3564156 GTTTAGTCC-CAGTCA-TTTTCATTTTTTGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* ** * *
3564191 CTTTAATTTTGA--ATGTTTTCATTTTTTAACTCGTG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * ** *
3564226 TTTTAAT-CTCGGTCA-TTTTCATTTTTTGACTTGTA
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * **
3564261 ATTTAATTTCAGTAATTTTCATTGTCGTTTTCATTTTCTGACTTGTG
1 ATTTAA--TC-CTGA---TCA---T--TTTTCATTTTTTGACTCATG
* * * *
3564308 GTTTAAT-TTCGATC-GTTTTCATTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3564343 GTTTAATCTTGGTCA-TTTTCATTTCTTGACTCATAG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
* **
3564379 CA--TAAT-CTCGGTCGCTTTTC-TTTTTCTGACTCATTG
1 -ATTTAATCCT-GATCATTTTTCATTTTT-TGACTCA-TG
** *
3564415 -TTTAAT-CTCGATC-GCTTTCACTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* ** * *
3564449 GTTTAATCCT-AGT-GGTTTTCATTTTCTCG-CTCAGG
1 ATTTAATCCTGA-TCATTTTTCATTTT-TTGACTCATG
* * * * *
3564484 GTTTAGTCCT-AGTCATTTTT-ATTTTCTG-CTTATA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3564518 ATTTAATTCTTATAATTTTCATTATCATTTTCATTTTCTAACTCATG
1 ATTTAA-TC--CTGA---TC---AT--TTTTCATTTTTTGACTCATG
* * * **
3564565 ATTTACT-TTCGATCA-TTTTAATTTCTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* * * *
3564601 ATTTAATACC-AAT--TGTTTTCATTTTCTAACACAT-
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGACTCATG
* ** * * *
3564635 AGTTTAATCCTTTGACCCA-TGGT-ATAATCTCGA-TCAT-
1 A-TTTAATCC--TGA-TCATTTTTCAT-TTTTTGACTCATG
* * * * ** * * *
3564672 -TTTCATTTTCTGACTCATGATTTAATCTTGGTCATTTTTAT-
1 ATTT-A-ATCCTGA-TCAT-TTTTCAT-TTTTTGA--CTCATG
* * * * *** * *
3564713 TTTCTAAGTCATGGTCTAATCCCAGTTGTTTTTATTTTCTGAATCGTG
1 ATT-TAA-TCCTGATC--AT----TTTTCATT---TTT-TGACTCATG
* * ** * *
3564761 ATTTAATCTTGGTC-GCTTTCATTTTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3564796 GTTTAATTCC-CATCA-TTTTCATTTTCTGACTTATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
** * * *
3564831 ATTTAATTTTGGTCATTTTT-ATTTCTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * *
3564867 GTTTAATCCTCG-T--TGTCTTCATTTTTTGACTCGTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* * *
3564902 GTTTAATGCTGATCATTTTTCATTTTTTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3564938 --GT--TCCTTG-TCA-TTTTAATTTTTTGACTCGTG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* * * * * * *
3564969 GTTTAATCTTAATC-GTTTTCAGTTTTAGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * * *
3565004 ATTTAATTTTGGTCATTTTT-ATTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
*
3565039 ATTTAATTCTGATCATTTTT-ATTTTTTGACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* ** * * **
3565074 GTTTAATCCCAAT-AATTTTCATTTTTTGATTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * ** *
3565109 ATTTAGT-TTCGGTTGTTTTT-ATTTCTTTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* *
3565145 ATTTAATGCTGGTCA-TTTTCATTTTTTGACTCATCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
** * *
3565181 -TTTAATTTTTGGTCATTTTT-AGTTTTTGACT--TG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3565214 AGGTTTAAT-CTCAGTCA-TTTTCACTTTTTGGACT-TTGG
1 A--TTTAATCCTGA-TCATTTTTCA-TTTTTTGACTCAT-G
* ** * *
3565252 GTTTAATCCCCATTC-TTTTACA-TTTTTGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3565287 CTTTAATCCCTG-TCA-TTTTCATTTTCT-AATGCGTTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACT-C-ATG
* *
3565323 -TTTAATCACT-ATCATTTTT-ATTTATTTAACTAATG
1 ATTTAATC-CTGATCATTTTTCATTT-TTTGACTCATG
* * * * *
3565358 AATTAATCCTGGTC-GTTTTCTTTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3565393 GTATAATCCTGACCGCTTTTCATTTTTTGACTCATCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
*** *
3565430 -TTTAAT-CTCGATC-GCATTCATTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* ** * *
3565464 GTTTAATCCTGAT-GGTTTTCATTTTCT-AGCTCAGG
1 ATTTAATCCTGATCATTTTTCATTTTTTGA-CTCATG
* * * * * ** *
3565499 GTTTAGTCCCGGTC-GTTTTCATTTTTTGACTTGTA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3565534 ATTTAAT-CTCGATCA-TTTTCATTTTCTAACTCGTA
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * **
3565569 ATTTAATTCTAAAAATTTTCATTATATTTTCATTTTCTAACTTGTG
1 ATTTAATCCT---GA---TC---AT-TTTTCATTTTTTGACTCATG
* * *
3565615 GTTTAAT-CTCGATCA-TTTTCATTTTCTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * **
3565650 ATTTAATTTTGATAATTTTT-ATTTCTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * **
3565686 ATTTAATACTGAT--TGTTTTCATCTTTTGACTTGTG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * *
3565721 ATTTAATCTTGATCA-TTTTCATTTTCTAACCCACG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3565756 ATTTAATCTTGGT--TGTTTTCATTTTCTGACCCATG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * * *
3565791 GTTTAATCTTGGTCGTTTTT-ATTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3565826 ATTTAAT-TTAAGTCATTTTT-A-TTTTTGGCTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * * * *
3565860 ACTTAATCTTGGT--TGCTTTCATTTTCTAACTCGTG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * *
3565895 GTTTAAT-TTCATCA-TTTTCATTTTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3565929 ATTTAATCCT-AGTCA-TTTT-ATTTCTCTGACTCA-C
1 ATTTAATCCTGA-TCATTTTTCATTT-TTTGACTCATG
** ** * * * * *
3565963 AGTTTAATCCCCATTGTCTTT-ATTATCTAACTCGTG
1 A-TTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** **
3565999 GTTTAATCTTGATTGTTTTTC-TTTTTCTGACTGGT-
1 ATTTAATCCTGATCATTTTTCATTTTT-TGACTCATG
* * *
3566034 AGTTTTAT-CTCGATTA-TTTTCATTTTCTGACTCATG
1 A-TTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3566070 GTATAATCCTG-TCA-TTTTAATTTTTTGACTCACG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * * * *
3566104 GTTTAATCCTCG-TC-GGTTTCAGTTTTAGATTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * **
3566139 ATTTAATTTTGGTCATTTTT-ATTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3566174 ATTTAAT--TGCCATCA-TTTTCATTTTCTGTCT-A-G
1 ATTTAATCCTG--ATCATTTTTCATTTTTTGACTCATG
* *
3566207 TAGTTTAAT-GTCGATCA-TTTTCA--TTTTGACTCGTG
1 -A-TTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3566242 ATTTAGT-TTCGGTCATTTTT-ATTTCTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* *
3566278 ATTTAAT-GTCAATCA-TTTTCATTTTTTGACTCATCG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCAT-G
* * *
3566314 -TTTAA---TGGTCATTTTT-GTTTTATGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3566345 GTTTAAT-CTCGGTCA-TTTTCACTTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * ** * * *
3566380 GTTTAATCCTCATTGTTTTACATTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
*
3566416 CTTTAATCCTTG-TCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* * *
3566451 ATTTAATTCTGGTC-GTTTTCATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3566486 -TTATAAT-ATCGGTCGCTTTTT-ATTTTCTGACTCATG
1 ATT-TAATCCT-GATC-ATTTTTCATTTTTTGACTCATG
* * * **
3566522 TTTTAAT-CT--TAATTGCTTTCATTTTTAGACTTGTG
1 ATTTAATCCTGATCATT--TTTCATTTTTTGACTCATG
* * * * ** *
3566557 GTTTATTCTTGGT-GGTTTTCATTTTCTTG-CTCAGG
1 ATTTAATCCTGATCATTTTTCATTTT-TTGACTCATG
* * * *
3566592 GTTTAGTCC-CAGTCA-TTTTCATTTTTTAACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3566627 TTTTAATCCCGATCA--TTTCATTTTTTGACTCGTA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3566661 ATTTAAT-TTCGATAATTTTCACTATCATTTTTGTTTTTTGACTCATG
1 ATTTAATCCT-GATCA-TTT---T-TCA------TTTTTTGACTCATG
* * * *
3566708 GTTTAGTCTTGATC-GTTTTCATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3566743 ACTTAATTTCT-TTCATTTTT-ATTTCTTTGACTTGTG
1 ATTTAA-TCCTGATCATTTTTCATTT-TTTGACTCATG
* * * * *
3566779 ATTTAATACTAATC-GTTTTAATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * *
3566814 ATATAATCTTGGTC-TTTTTGATTTTTTAACCCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3566849 GTTTAATCC-CATTC-GTTTTCATTTTTTGAC-CTAT-
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTC-ATG
* * * * * **
3566883 AGTTTAAT-CTCAGTCA-ATTTAATTTTCTAACTTGTG
1 A-TTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * ** * *
3566919 ATTTAAT-CGGGTTGTTTTT-ATTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3566953 GTATAAACC-CAGTCATTTTT-ATTTTTTGACTCATA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3566988 ATTTAAT-CTCGATCA-CTTTCATTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3567023 GTTTAAT-TTACATCA-TTTTCATTTTTTGACTTATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3567058 ATTTAATTCTGGTCATTTTT-ATTTCTCT-AGCTCGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGA-CTCATG
* *
3567094 TTTTAATCCTCGCT-A-TTTTCATTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3567129 GTTTAATCCCGATCGA-TTTTCA--TTTT-A---GTG
1 ATTTAATCCTGATC-ATTTTTCATTTTTTGACTCATG
* * * **
3567159 GTTTCAT-CTCGATCA-TTTTCATTTTCTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * ** *
3567194 GTTTATTCCCAATCA-TTTT-ATTTTTTCTGAC-CTGTG
1 ATTTAATCCTGATCATTTTTCA-TTTTT-TGACTC-ATG
* * * * * *
3567230 GTTTTAT-CTCGGTCGTTTTT-AGTTTTAGACT-AGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
** ** *
3567265 ATTTAATTTTGGCCA-TTTT-ATTTTTTGACTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** *
3567299 ACTTAATTTTGGT--TGTTTTCATTTTTTGACT-A-G
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * *
3567332 TAGTTTAATCTTGGTCATTTTT-ATTTTTTGACTCGTG
1 -A-TTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3567369 ATTCAGTTCTGGTCATTTTT-ATTTCTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* *
3567405 ATTTAATGCTGGTCA-TTTTCATTTTTTGACTC--G
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3567438 -TTTAAT-TTTAGTCA-TTTTCATTTTCTAACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * **
3567472 GTTTAATCTTGGTCA-TTTTCACTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3567507 GTTTTAT-CT--TCATTGTCTTACATTTTCTGACTTGTG
1 ATTTAATCCTGATCATT-T-TT-CATTTTTTGACTCATG
* * * *
3567543 CTTTAATCCCTG-TC-GTATTCATTTTTTGACACATTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCA-TG
* *
3567579 -TTTAATCCCTG-TCATTTTT-ATTTTTTAACTTATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3567613 ATTTAATCCTGGTCA-TTTTCATTTTTTTGATTCGTG
1 ATTTAATCCTGATCATTTTTCA-TTTTTTGACTCATG
* * * * * **
3567649 GTATAAT--TGTAGTCATTTTTTAGTTTCTGACTTGTCG
1 ATTTAATCCTG-A-TCATTTTTCATTTTTTGACTCAT-G
*
3567686 -TTTAAT-CTCGATC-GTTTTCATTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * ** * *
3567720 GCTTAATCCTGGT-GGTTTTCATTTTCT-AGCTCAAG
1 ATTTAATCCTGATCATTTTTCATTTTTTGA-CTCATG
* *
3567755 GTTTAGTCCT-AGTCA-TTTTCA-TTTTTGAC-C-TG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * *
3567787 TACTTTAAT-TTCGATC-GTTTTCTTTTTTTAACTTATG
1 -A-TTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3567824 TTTTAATCCCTG-TCATTTTT-ATTTTTTAACTCATA
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
** * * *
3567859 ATTTAATTATGATAATTTTCATTATCGTTTTTAGACTTTTGACTTGTG
1 ATTTAATCCTGATCATTTT--TCAT--TTTTT-GAC---T--C--ATG
* * ***
3567907 ATTTAAT-CTCGAT--TGTTTTCATTTTCTAACTTGCG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* ** **
3567942 ATATAATTTTGATCA-TTTTCA---TTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* **
3567974 ATTTAATACC-GATCA-TTTTCATTTTCTGACTTGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3568009 ATTTAAT-CTCGATCA-TTTTCATTTTCTAACCCACG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * *
3568044 GTTTAAT-GTCGGTC-GTTTTCATTTTCTGACCCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
*
3568079 GTTTAAT-CTCGATCA-TTTTCATTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * ** **
3568114 ATTTAAT-TTGGGTTGTTTTT-ATTTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * **
3568149 ATTTAATCC-CAGTCGTTTTT-ATTTTTTGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * ** * * *
3568184 ATTTAATCTTGGTCGCTTTT-ATTTTCTAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * **
3568219 GTTTAATTCC-CATC-GTCTTCATTTTCTGACTTGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
** * * * * **
3568254 ATTTAATTTTGGTC-TTTTTTATTTCTCTAACTTGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
** * * **
3568290 GCTTAATCCTCG-T--TGTCTTCATTTTCTGACTTGTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* * * *
3568325 GTTTAAT-CTCGATCGTTTTTCATTTTTTCAAT-AGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
* * * * **
3568361 GTTTCAT-CTAGGTCA-TTTTCTTTTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3568396 GTTTAATCCTTG-TCA-TTTTAATTTTTTGACTCGTG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* * * * * **
3568431 GTTTAGT-CTCGATCATTTTT-AGTTGTAGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * *
3568466 ATTTAATTTTGGTCATTTTT-ATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3568501 ATTTAAT-TTCATCGTTTTT-ATTTTCTGACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * *
3568535 GTTTAATCC-CAGTCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* ** * *
3568570 ATTTAGTTTTGGTCATTTCT-ATTTCTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* ** *
3568606 ATTTAAT-ATCGATCA-TTTTCATTTTTTGACTTGTC
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3568641 ATTTAATTCCAG-TCGTTTTT-ATTTTCTGACTCAT-
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * **
3568675 AGTTTAAT-CTCGATCA-TTTTCACTATTTGACTTGTG
1 A-TTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* ** * * *
3568711 GTTTAATCCCTG-TTGTTTTACATTTTCTGACTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3568747 CTTTAATCCTTG-T--TGTTTTCATTTTCTGACACATTG
1 ATTTAATCC-TGATCAT-TTTTCATTTTTTGACTCA-TG
* *
3568783 -TTTAATCCCT-ATCATTTTT-ATTTTTAGACTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3568817 ATTTAATCCTGGTCA-TTTTCATTTTTTTAACTCGTG
1 ATTTAATCCTGATCATTTTTCA-TTTTTTGACTCATG
* * * * * *
3568853 GTATATTCCCGATCATTTTTCATTTTCTGACTTATCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
** *
3568890 -TTT-AT-CTGATC-GCTTTCATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * * * *
3568922 GTTTAATCCT-AGT-GGTTTTCAATTTCTCACTCAGG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * ** *
3568957 GTTTAGTCCCAATCA-TTTTCATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * **
3568992 CTTTAAT--T--TCAGTTGTTTTCATTTTTTAACTTGTG
1 ATTTAATCCTGATCA--T-TTTTCATTTTTTGACTCATG
* * *
3569027 TTTTAATCCTGGTCA-TTTTCATTTTTTGACTCATA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3569062 ATTTAATTTCGGTAATTTTTATTATCATTTTCATTTTTTGACTCATG
1 ATTTAA--TC-------CTGATCAT--TTTTCATTTTTTGACTCATG
* * *
3569109 GTTTAAT-CTCGAT--TGTTTTCATTTTCTGCCTCATG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* * * *
3569144 ATTTAAT-TTCGATCATTTTT-ATTTCTCTGGCTTATG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
*** ** *
3569180 ATTTAAAATTGATCA-TTTTCATTTTCGGACTCAAG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3569215 ATTTAAT-CTCGATCA-TTTTCATTTTCTAAC-CTATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTC-ATG
* * * **
3569250 GTTTAATCAC-GGT--TGTTTTCATTTTCTGACTTGTG
1 ATTTAATC-CTGATCAT-TTTTCATTTTTTGACTCATG
** *
3569285 ATTTAATCAAGGTCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3569320 GTTTAATCTTGATC-TTTTTTATTTTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * *
3569355 ATTTAAT-CTCGATC-GCTTTCATTTTCTAACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* *
3569390 GTTTAATTCC-CATCA-TTTTCATTTTTTGACTCGA-G
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTC-ATG
** * *
3569425 ATTTAATTTTGATCATTTTT-ATTTCTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* *
3569461 GTTTAATCC---CCATTGTCTTCATTTTTTGACTCATG
1 ATTTAATCCTGATCATT-T-TTCATTTTTTGACTCATG
* * * * **
3569496 GTTTAATGCC-AATCATTTTTCATTTTTTTATTGGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * ***
3569532 GTTTCAT-CTCAGTC-GTTTTCATTTTTTGACTCGCA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3569567 ACTTAATACCTG-T--TGTTTTAATTTTTTGACTCGT-
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGACTCATG
* * *
3569601 AGTTTAATCCCGATCATTTTT-AATTTTAGACTCATG
1 A-TTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * * *
3569637 ATTTAATTTTGGTCATTTTT-ATTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** *
3569672 ATTTAATTTTGATCA-TTTTCAATTTTTGACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* **
3569707 GTTTAATCCT-AGTCA-TTTTCATTTTTTGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3569742 ATTTAGTTCCAG-TCATTTTT-ATTTCTTTGACTCATG
1 ATTTA-ATCCTGATCATTTTTCATTT-TTTGACTCATG
*
3569778 ATTTAATGCCTG-TCA-TTTTCATTTTTTGACTTATCG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCAT-G
*
3569814 -TTTAATTCTGATCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * **
3569848 ATTTAAT-CTCGATCA-TTTTCACTTTTTAACTTTTCG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCAT-G
** * * *
3569884 -TTTAATCCT-AGTTGTTTTACATTTTCT-AGCTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGA-CTCATG
* ** * * * *
3569919 CTTTAATTTTTG-TCA-TTTTCATTTTCTGACACGTT
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* ** *
3569954 ATTTAATCCT-TTCATTTTT-ATTTTTTGACTTGTA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
**
3569988 ATTTAAT-CTCGATCGCTTTTCATTTTCTT-ACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTT-TTGACTCATG
* * * * *
3570024 GTTTAATCCTGAT--TGCTTTCATTTTCTAACCCAT-
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* ** * * * *
3570058 AGTTTAATCCTGGT-GGTTTTCATTTTCTCACTTAGG
1 A-TTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3570094 GTTTAGT-CTCAGT--TGTTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGACTCATG
* ** * * * *
3570129 CTTTAATTTTGGTC-GTTTTCATTTTTTAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3570164 -TTTAAGT-CTCAGTCATTTTT-ATTTTCTGACT-AGTA
1 ATTTAA-TCCTGA-TCATTTTTCATTTTTTGACTCA-TG
* * *
3570199 ATATAATTCCAATAATTTTCATTATCATTATTATTTTTTGACTCATTG
1 ATTTAA-TCC--TGA---TCA-T-T--TT-TCATTTTTTGACTCA-TG
* *
3570247 -TTTAATCTCT-ATTA-TTTTCATTTTTTGACTC-GG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* **
3570280 ATTTAAT-TTCGATCATTTTT-ATTTCTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* * *
3570316 ATTTAGTACTGATCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3570351 ATTTAATCTTGATCGTTTTCATTGTCATTTTCCTTTTCTAACCCATG
1 ATTTAATCCTGATC--ATT--TT-TCA---T--TTTT-TGACTCATG
* * * *
3570398 GTTTGATCCT-AGT-TTGTTTTCATTTTCTGAC-CAATG
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGACTC-ATG
* * * *
3570434 CTTTAATCATGAT--TGTTTTCATTTTCTAACTCATG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * *
3570469 ATTTAATCCAGGTCATTTTT-ATTTTCTAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3570504 GTTTAATCCTGGTCATTTTT-ATTTTTTGATTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3570539 ATTTAAT-CTAGATCGTTTTT-ATTTTCTAACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3570574 GTTTAATTCC-CATCA-TTTTCATTTTCTAACTCATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3570609 ATTTAATTCTGGTCATTTTT-ATTTCTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * **
3570645 GTTTAATCC----CATTGTCTTCATTTTTTTACTCGGG
1 ATTTAATCCTGATCATT-T-TTCATTTTTTGACTCATG
* * * * **
3570679 GTTTAAT-CTCAATCGTTTTTCATTTTCTGACTGGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * *
3570715 GTTTCATTCAG-T--TGTTTTCATTTCTAG-CT-AGTG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCA-TG
* * * * *
3570748 GTTT-ATCCTGGTCGTTTTT-AGTTTTCGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3570782 ATTTAAT-CTAAATCATTTTT-AATTTTTGACTCATA
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** *
3570817 ATTTAATTTTGGTCA-TTTTCATTTTTTGACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * *
3570852 GTTTAATCCCGGTCA-TTTTCATTTTTTGACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * * * * *
3570887 ATTTAGTTCC-CATCAATTTT-GTTTCTTTAACTCGTG
1 ATTTA-ATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * * *
3570923 ATTTAAT-TTTAGTCA-TTTTCATTTTTTTACTCGTC
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** * *
3570958 ATTTAATTATGGTCATTTTT-ATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3570993 GTTTAATCTTGGTCA-TTTTCACTTTTTGACTTGTTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGAC-TCATG
** ** * *
3571029 -TTTAATCCCCATTGTTTTACATTTTCTGA-TGCATTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACT-CA-TG
* *
3571065 -TTTAATCCCTG-TTA-TTTTCA-TTTTTGACTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3571098 ATTTAATCTTGGTCA-TTTTCATTTTTTGACTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** ** *
3571133 GTATAATCC-GAGTCGCTTTTCATTTTTTGACTTGTC
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** *** * *
3571169 ATTTAATCCCAATC-GCATTCATTTTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * ** * * *
3571204 GTTTAATATTGGT-GGTTTTCATTTTCTCG-CTTAGG
1 ATTTAATCCTGATCATTTTTCATTTT-TTGACTCATG
* * * * * *
3571239 GTTTAGT-TTCAGTC-GTTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3571274 CTTTAAT-TTGAGTCA-TTTTCATTTTTTAACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * ** *
3571309 TTTTAATCCT-AGTCA-TTTTCATTTTTTTACTTGTA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** *
3571344 ATTTAATTTTGGTAATTTTTGTTATTGTTTTCATTTTTTGACTCATG
1 ATTTAATCCT-G--A------TCA-T-TTTTCATTTTTTGACTCATG
* * * * **
3571391 GTTTAAT-CTCA-AACGTTTTCATTTTTTGACTTGTG
1 ATTTAATCCTGATCA-TTTTTCATTTTTTGACTCATG
* * **
3571426 ATTTAAT-TTCGATCATTTTT-ATTTCTCTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* ** * * **
3571462 ATTAAATATTGATCA-TTTTCATCTTCTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3571497 ATTTAAT-CTAAGTCA-TTTTCATTTTCTAACCCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * *
3571532 GTTTAATCCCGGTC-GTTTTCATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * *
3571567 GTTTAATCCT-AGT-GGTTTTCATTTTTTCACTCAGG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3571602 GTTTAGTACCCG-TCA-TTTTCATTTTCTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3571637 CTTTAAT-TTCGGT--TGTTTTCATTTTTTAACTTGTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* * *
3571672 TTTTAATCCTGGTCA-TTTTCATTTTTTGACTCATA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3571707 ATTTAATTTCGATAATTTTTATTATCATTTTCATTTTTTGACTCATG
1 ATTTAA--TC-------CTGATCAT--TTTTCATTTTTTGACTCATG
* * * *
3571754 GTTTAAT-CTCGAT--TGTTTTCATTTTCTGCCTCGTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* * * **
3571789 ATTTAAT-TTCGATCATTTTT-ATTTCTCTGGCTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
*** **
3571825 ATTTAAAATTGATCA-TTTTCATTTTCGGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3571860 ATTTAATCTTGATCA-CTTTCATTTTCTAACCCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3571895 GTTTAATCAC-GGT--TGTTTTCATTTTCTGACTTGTG
1 ATTTAATC-CTGATCAT-TTTTCATTTTTTGACTCATG
** *
3571930 ATTTAATCAGGGTCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3571965 GTTTAATCCCGATC-TTTTTTATTTTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * *
3572000 ATTTAAT-CTCGATC-GCTTTCATTTTCTAACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* *
3572035 GTTTAATTCC-CATCA-TTTTCATTTTTTGACTCGA-G
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTC-ATG
** * *
3572070 ATTTAATTTTGATCATTTTT-ATTTCTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * * * *
3572106 GTTTAATCCCCG-T--TGTCTTCATTTTCTAACTCGTG
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * **
3572141 GTTTAATGCC-AATCATTTTTCATTTTTTTATTGGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * * **
3572177 GTTTCATCTTGGTC-GTTTTCATTTTTTGACTCGCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3572212 GTTTAATACTTG-TC-GTTTTAATTTTTTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3572247 GTTTAATCCCGATCACTTTTT-AATTTTAGACTCCTG
1 ATTTAATCCTGATCA-TTTTTCATTTTTTGACTCATG
** * * *
3572283 ATTTAATTTTGGTCATTTTT-ATTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
**
3572318 ATTTAATTTTGATCA-TTTTCATTTTTTGACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* **
3572353 GTTTAATCCT-AGTCA-TTTTCATTTTTTGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3572388 ATTTAGTTCCAG-TCATTTTT-ATTTCTTTGACTGATG
1 ATTTA-ATCCTGATCATTTTTCATTT-TTTGACTCATG
* * *
3572424 ATTTAATGCTTG-TCA-TTTTCATTTTTTAACTAATCG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCAT-G
*
3572460 -TTTAAT-TTCGATCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * **
3572494 ATTTAAT-CTCGATCA-TTTTCACTTTTTAACTTTTCG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCAT-G
** * * * *
3572530 -TTTAATCCT-AGTTGTTTTACATTTTCTAACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * *
3572565 CTTTAATCTTTG-TCA-TTTTCATTTTCTGACACATT
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
**
3572600 ATTTAATCCTG-TCATTTTT-ATTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
**
3572634 ATTTAATGCC-GATCGCTTTTCATTTTCTT-ACTCATCG
1 ATTTAAT-CCTGATCATTTTTCATTTT-TTGACTCAT-G
* * * *
3572671 -TTTAATCCTGAT--TGCTTTCATTTTTCGACCCGTG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * ** * * * *
3572705 GTTTAATCCTGGT-GGTTTTCATTTTCTCACTTAGG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3572740 GTTTAGT-CTCAGT--TGTTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGACTCATG
* ** * * * *
3572775 CTTTAATTTTGGTC-GTTTTCATTTTTTAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * **
3572810 -TTTAAGT-CTCAGTCA-TTTTCATTTTCTGACTGGT-
1 ATTTAA-TCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3572844 AATAAATTCCAATAATTTTCATTATCATTATCATTTTTTGACTCATTG
1 ATTTAA-TCC--TGA---TCA-T-T--TT-TCATTTTTTGACTCA-TG
* *
3572892 -TTTAATCTCT-ATTA-TTTTCATTTTTTGACTC-GG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * * **
3572925 ATTTAAT-TTCAATCATTTTT-ATTTCTCTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* **
3572961 ATTTAGTATTGATCA-TTTTCATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3572996 ATTTAATCTTGATCGTTTTCATTATCATTTTCCTTTTCTAACCCATG
1 ATTTAATCCTGATC--ATT--TT-TCA---T--TTTT-TGACTCATG
* * * *
3573043 GTTTGATCCT-AGT-TTGTTTTCATTTTCTGAC-CAATG
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGACTC-ATG
* * *
3573079 GTTTAATCAC-GAT--TGTTTTCATTTTCTAACTCATG
1 ATTTAATC-CTGATCAT-TTTTCATTTTTTGACTCATG
* * * *
3573114 ATTTAATCCAG-TCATTTTT-ATTTTCTAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3573148 GTTTAATCCTGGTCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3573183 ATTTAAT-CTAGATCGTTTTT-ATTTTCTAACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3573218 GTTTAATTCC-CATTA-TTTTCATTTTCTGACTCATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3573253 ATTTAATTCTGGTCAGTTTT-ATTTCTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* **
3573289 GTTTAATCC----CATTGTCTTCATTTTCTT-ACTTGTG
1 ATTTAATCCTGATCATT-T-TTCATTTT-TTGACTCATG
* * *
3573323 GTTTAAT-CTCAATCGTTTTTCATTTTTTGACT-AGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
* * * *
3573359 GTTTCAT-CTCGGT--TGTTTTCATTTTCT-AGCT-AGTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGA-CTCA-TG
* * * * *
3573394 GTTT-ATCCTGGTCGTTTTT-AGTTTTGGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3573428 TTTTAAT-CTAAATCATTTTT-AGTTTTTGACTCATA
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** *
3573463 ATTTAATTTTGGTCA-TTTTCATTTTTTGACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* *
3573498 GTTTAAT-CTCGATCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * *
3573533 ATTTAGTTCC-CACCAATTTT-GTTTCTTTAACTCATG
1 ATTTA-ATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * * *
3573569 ATTTAAT-GTCATCA-TTTTCATTTTTTTACTCGTC
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3573603 TTTTAATTCTGGTCA-TTTTCATTTTTTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** *
3573638 TTTTAATCCT-AGTCA-TTTTCATTTTTTTACTTGTA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** *
3573673 ATTTAATTTTGGTAATTTTTGTTATTGTTTTCATTTTTTGACTCATG
1 ATTTAATCCT-G--A------TCA-T-TTTTCATTTTTTGACTCATG
* * * * * **
3573720 GTTTAAT-CTCA-AACGTTTTCATTTTTTTACTTGTG
1 ATTTAATCCTGATCA-TTTTTCATTTTTTGACTCATG
** * **
3573755 ATTTAATTTTGATCATTTTT-ATTTCTCTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * **
3573791 ATTAAAT-ATCGATCA-TTTTCATTTTCTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3573826 ATTTAAT-CTAAGTC-GTTTTCATTTTCT-AGC-CAATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGA-CTC-ATG
* * *
3573861 ATTTAATCCCGATCA-TTTTCATTTTCTGACCCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3573896 GTTTAGTCCTGGTC-CTTTTCATTTTTTGACTAATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3573931 ATTTAATTCGGGTCCTTTTT-ATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3573966 GTTTAATCTTGGTCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
*
3574001 ATTTAAT-CTCGATCA-CTTTCATTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * **
3574036 GTTTAATTCTTATCA-TTTTCATTTTCTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3574071 ATTTAATTCT-AGTCATTTTT-ATTTCTCTGACTCACG
1 ATTTAATCCTGA-TCATTTTTCATTT-TTTGACTCATG
* * *
3574107 GTTTAATCCCTG-T--TGTCTTCATTTTTTAACTCATG
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGACTCATG
* * **
3574142 GTTTAAT-TTCGATTGTTTTTCATTTTTTGACT-AGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
* * * * *
3574178 GTTTCATCCCGGTCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3574213 ATTTAAT-TTCGATCATTTTT-ATTTTCTGACTTATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
*
3574248 ATTTAATTCCAG-T--TGTTTTCATTTTTTGACT-AGTG
1 ATTTAA-TCCTGATCAT-TTTTCATTTTTTGACTCA-TG
* * * * * **
3574283 GTTTAATCTTGGTCA-TTTTCATTTTATAACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3574318 ATTTAGTTCTGGTCATTTTT-ATTTCTTTAACTTATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* *
3574354 ATTTAAT-GTCAATCA-TTTTCATTTTTTGACTCATCG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCAT-G
* * * * *
3574390 -TTTAATTCTGATCATTTTT-GTTTTCTAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3574424 GTTTAATCTTGGTCA-TTTTCACTTTTTGACTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3574459 GTTTAATCCCT-AT--TGTTTTCATTTTCTGATGTGTTG
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGA-CTCATG
** *
3574495 -TTTAATCCTTG-TCATTTTT-ATTTTTTGACTTGTA
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* * *
3574529 ATTTAATCCTTATC-GTTTTCATTTTTTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *** * * *
3574564 GTATAATCCTAATTGCTTTTCCTTTTTTGACTCGTC
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** *
3574600 ATTTAATCCCAATCA-TTTTCA-TTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * ** **
3574634 GTTTAATCTTGGT-GGTTTTCATTTTCTTG-CTCGGG
1 ATTTAATCCTGATCATTTTTCATTTT-TTGACTCATG
* * * * *
3574669 GTTTAGTCCT-AGTCA-TTTTCATTTTCTAACTTATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3574704 CTTTAATTCCAG-T--TGTTTTCATTTTTTAACTCATG
1 ATTTAA-TCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * ** *
3574739 TTTTAATCC-CAGTCATTTTT-AATTTCTGACTTGTA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** * *
3574774 ATTTAATTTTAGTAATTTTCATTATCATTATCATTTTCTAACTCATG
1 ATTTAATCCT-G--A---TCA-T-T--TT-TCATTTTTTGACTCATG
* ** **
3574821 GTTTAATATTGATC-GCTTTCATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * * *
3574856 ATTTAATTTTGATCATTTTT-ATTTCTCTAACTTATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
*
3574892 ATTTAATACC-GAT--TGTTTTCATTTTCTGACT--TG
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGACTCATG
* *
3574925 CTATTTAAT-CTCAATCATTTTT-ATTTTTTAAC-C---
1 --ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * *
3574958 ----CATCCCGGTCA-TTTTCATTTTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3574989 ATATAAT-CTCAGTCGTTTTT-ATTTTCTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * *
3575024 GTTTAATTCC-CATCA-TTTTCATTTTCTGACTTACG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
** * * **
3575059 ATTTAATTTTGGTCATTTAT-ATTTCTCAGACTAAACCCCATTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACT------CA-TG
* * * * * * **
3575102 TAATTATTTTCTGGCTCATGCTTTAATCTTAATCTTTTTTCATTTTTG
1 -ATTTA-ATCCT-GATCAT--TTT--TC---A--TTTTTTGACTCATG
* ** * * * * *
3575150 ACTGGTGGT-TTCATTTCAATCATTTTTATTTTCTGACTTATG
1 A-T-TTAATCCTGA--TC-AT--TTTTCATTTTTTGACTCATG
* * *
3575192 GTTTAATCCCTG-TCATTTTT-ATTTTTGGACACATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* ** * * **
3575227 GTTTAATCCCCATCA-TTTTCAGTTTTAGACTCGGG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * *
3575262 ATTTAATTTTGGTCATTTTT-ATTTTTTGAGTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** *
3575297 ATTTAATTTTGATC-TTTTTCATTTTTTAAC-CAGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * * * **
3575332 GTTTAATCCCGATCATTTTTTAACTCATGTTTTAATCTCGACC
1 ATTTAATCCTGATCA--TTTT---TCATTTTTTGA-CTC-ATG
* ** * * * * * *
3575375 ATTTTCATTTTTTAACTCATGTTTT-AATCTTGGCCATTTTCATTT
1 A-TTT-A-ATCCTGA-TCAT-TTTTCATTTTTTG--A--CTCA-TG
* * * * * * * * *
3575420 TTTTACTCAT-AGTTAATTTTGATTATTTTCA-TTATC
1 ATTTAATCCTGA-TCATTTTTCATT-TTTTGACTCATG
** * * * * *
3575456 ATTTTCGTTTCTGACTCATGGTTTAATCTCGATCGTTG--TCATT
1 A-TTT-AATCCTGA-TCAT-TTTTCAT-T---T-TTTGACTCATG
* * ** * **
3575499 TTTTGACTTGTGATTTAATTTTGATCATTTTTATTTCTTTGACTTGTG
1 ATTT-AATCCTGA--TCATTTT--TC------ATTT-TTTGACTCATG
* * *
3575547 ATTTAAT-ATCGAT--TCTTTTCATTTTCTAACTCATG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* * * * * *
3575582 ATTCAAT-CTCACTC-GTTTTCATTTTCTAACCCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* ** * *
3575617 GTTTAATCCCAATCA-TTTTCATTTTCTGACCCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * **
3575652 GTTTAATTGTGGTCA-TTTTCATTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * *
3575687 ATTTAAT-CTGGATTGTTTTT-GTTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * *
3575722 GTTTAATCTTGGTCGTTTTT-ATTTTCTGACTCATT
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * *
3575757 ATTTAATATTGGT--TGTTTTCATTTTCTGACTCATG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * **
3575792 GTTTAATTCC-CATC-GCTTTCATTTTTTGACT--TG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * *
3575825 --TGAATTCTGGTCATTTTT-ATTTCTCTAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * **
3575859 GTTTAAT-CTCGATCA-TTTTCACTTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * * *
3575894 GTTTAATCCTCATTGA-TTTACATTTTCTAACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * **
3575930 CTTTAATCCCT-ATCA-TTTTCATTTTCTGACGTGTTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGAC-TCATG
**
3575966 -TTTAATCCTTG-TCATTTTT-ATTTTTTGACTTGTG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
3576000 ATTTAA---T-ATCAGTTATCTTCATTTTTTGACTCATG
1 ATTTAATCCTGATCA-TT-T-TTCATTTTTTGACTCATG
* * * *
3576035 GTATAAT-CTCAGTCATTTTTCATTTTCTGACTC--G
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3576069 -TTTAAT-CTAGATC-GTTTTCATTTTTTGACTCGTTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTC-ATG
* * ** * * *
3576104 -TTTAATGCTGGT-GGTTTTCATTTTCTCAC-CTAGG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTC-ATG
* ** ** * *
3576138 GTTTTGTCCCAATCA-TTTTCATTTTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * *
3576173 CTTTAATTTTGGTCA-TTTTCATTTTTTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3576208 TTTTAATCCTGACCATTGTT-ATTTTCTGACTCATA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3576243 ATTTACTTTCGATAATTTTCATTATCATTTTCATTTTCTGACACATG
1 ATTTA--ATC-CTGA---TC---AT--TTTTCATTTTTTGACTCATG
* * * *
3576290 GTTTTAAT-CTCA--ATTGTTTTCATTTTCTAACTCATG
1 -ATTTAATCCTGATCA-T-TTTTCATTTTTTGACTCATG
** *
3576326 ATTTAATTTTGATCATTTTT-ATTTCTCTGACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCA-TG
* *
3576362 ATTTAATAGC-GATCA-TTTTCATTTTTTGACTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* **
3576397 ATTTAATTCT-AGTCATTTTT-ATTTCCCTGAC-CATG
1 ATTTAATCCTGA-TCATTTTTCATTT-TTTGACTCATG
* *
3576432 GTTTAATCCCT-AT--TGTCTTCATTTTTTGACTCATG
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * **
3576467 GTTTAATCCTAATCATTTTTCATTTTCTAACTGGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3576503 GTTTCACCCCGATCA-TTTTCATTTTTTGACTCAT-
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3576537 AGTTTAATCCCT-ATCA-TTTTAATTTTTTTACTCGTG
1 A-TTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3576573 GTTGAATCC-AAGTCA-TTTTCAGTTTTAGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** * * * *
3576608 ATTTAATTTTGGTCATTTTT-ATTTTCTGACTTATA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3576643 ATTTAATTCC-AATC-GTTTTCATTTTTTGACTAATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * *
3576678 GTTTAATCCTAATCATTTTT-ATTTTCTAACTCGTA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3576713 ATTTAGTTCCAG-TTATTTTT-ATTTCTTTGACTCATT
1 ATTTA-ATCCTGATCATTTTTCATTT-TTTGACTCATG
* * ** *
3576749 ATTTAAT-GTCAGTCA-TTTTCATTTTTTGACTGGTC
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3576784 ATTTAATTCT-AGTCA-TTTTAATTTTTTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * * * **
3576819 GTCCTATTTC-GGTCA-TTTTCACTTTTTGACTTGTG
1 AT-TTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * *
3576854 GTTTAATCCCTG-TTGTTTTACATTTTTTGAATCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * ** * **
3576890 CTTTAATCTCTG-TC-GTTTTCATTTACTGATGTGTTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGA-CTCATG
* *
3576926 -TTTAATCCCTG-CCATTTTT-ATTTTTTGACTCTTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* *
3576960 ATTTAATCCTGGTCATTTTT-ATTTTTTGACTCGT-
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** *
3576994 AGTATAATCCCAATCATTTTTCAATTTTTGACTCATCG
1 A-TTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
* ** *
3577032 -TTTAATCCTTATC-GCTTTCATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * *
3577066 GTTTAATCCCGGTGC--TTTTCATTTTCTCACTAAATG
1 ATTTAATCCTGAT-CATTTTTCATTTTTTGACT-CATG
* ** * *
3577102 -TTTAGTCCCAATC-GTTTTCATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * *
3577136 CTTTAATACT-AGCCTTTTTCATTTTTTAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** * *
3577171 TTTTAATCTTGGCCA-TTTTCACTTTCTGACT--TG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** *
3577204 TAATTAATTTTGATTATTTTAATTATCATTTTTATTTTCTGACTCATG
1 -ATTTAATCCTGATCA--TT--TT-TCA----T-TTTT-TGACTCATG
* * * * **
3577252 GTTTAAT-GTCAAACA-TTTTCATTTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * *
3577287 ATTTAAT-CTCGGTCA-TTTTCCTTTTCTAACCCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3577322 GTTTAATCCTGGTCA-TTTTCATTTTCTGAAC-CATG
1 ATTTAATCCTGATCATTTTTCATTTTTTG-ACTCATG
* * *
3577357 GTTTAATCCCGATCA-TTTTCATTTTTTGACTCTTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** *
3577392 ATTTAAT-CTAGGCCATTTTT-ATTTTTTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
*
3577427 A-TTAATCCT-AGTCATTTTT-ATTTTCTT-ATTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTT-TTGACTCATG
* * *
3577461 ATTTAAT-CTCGATC-GTTTTCATTTTTTGACCCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3577496 GTTTAAT--TG-CCATTGTTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGATCA-T-TTTTCATTTTTTGACTCATG
** *
3577531 ATTTAATTTTGGTCATTTTT-ATTTCTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* ** * *
3577567 GTGCAATTCCT-AT--TGTCTTCATTTCTTGACT--TG
1 ATTTAA-TCCTGATCAT-TTTTCATTTTTTGACTCATG
* * **
3577600 TAGTTTAAT-CTCGATCATTTTTCATTTTCTGATTGGTG
1 -A-TTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * * *
3577638 GTTTCAT-CTCGGTCA-TTTTCATTTTCTAACACGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * *
3577673 GTTTAATCCCCG-TC-GTTTTCAGTTTTAGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3577708 ATTTAGT-TTCGACCATTTTT-ATTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* *
3577743 ATTTAATTCT-AGT--TGTTTTCATTTTTTGACT-AGTC
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGACTCA-TG
* **
3577778 ATTTAAT-CTTAGTCA-TTTTCATTTTTTGACTTGTTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGAC-TCATG
** * * * *
3577814 -TTTAATTTTGGTCA-TTTTCCTTTTTCTAACTTATG
1 ATTTAATCCTGATCATTTTTCATTTTT-TGACTCATG
* * **
3577849 GTTTAAT-CTCGATCA-TTTTCACTTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * ** * * *
3577884 GTTTAATCCCCG-TTGTTTTACATTTTCTGACTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3577920 CTTTAATCCCT-ATCA-TTTTCATTTTCT-AATACATTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACT-CA-TG
* ** *
3577956 -TTCAATCCCAATCATTTTT-ATTTTTTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3577990 ATTTAATCCTGGTC-GTTTTCATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3578025 GTATAATCCTTG-TCATTTTTCATTTTCTGACTTGTCG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCAT-G
* * * *
3578062 -TTTAAT-CTCGATCA-CTTCCATTTTCTAACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * ** * * * * *
3578096 GTTTAATCTTGGT-GGTTTCCATTTTCTCACTTAGGG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* ** * *
3578132 A-TTAGTCCCAATCA-TTTTAATTTTTTGACTCA-C
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * * * **
3578165 ACTTTAATTTTGGT--TGTTTTCATTTTCTAACTTGTG
1 A-TTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * * *
3578201 TTTTAATCCCGATCATTTTT-ATTTTCTGACTTGTAATTCA
1 ATTTAATCCTGATCATTTTTCATTTTTTGAC---TCA-T-G
** * * *
3578241 ATTTTGGCAATTTTCATTATCGTTTTCATTTTTTGACTCGTG
1 A-TTT---AATCCTGATCAT--TTTTCATTTTTTGACTCATG
* * * * *
3578283 GTTTAATCTTGATC-GTTTTCA-TTTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * **
3578317 ATTTAATTTTGATCATTTTT-ATTTCTATGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* *
3578353 ATTTAATACC-AATCA-TTTTCATTTTTTGACTCATA
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3578388 ATTTGATCTCTG-TCA-TTTTCGTTTTCTAACTTGTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
** *
3578423 ATTTAATCCCAATCA-TTTTCATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3578458 ATTT-A-CATGGTC-GTTTTCATTTTCTGACTCAAG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
*
3578491 ATTTAAT-C-GAAGTCATTTTT-ATTTTCTGACTCATG
1 ATTTAATCCTG-A-TCATTTTTCATTTTTTGACTCATG
* * * *
3578526 ATTTAAT-CTCGATCA-TTTTCATTTTCTAACCCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3578561 CTTTAATTCC-AATCA-TTTGCATTTTCTGACTCATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3578596 ATTTAATTCTGGTCATTTTT-ATTTATTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * *
3578632 GTTTAAT-TTAGGT--TGTTTTCATTTTTTGACT-AGTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCA-TG
* * *
3578667 GTTTAATCCTGGTCA-TTTTCATTTTTTTGACTTATG
1 ATTTAATCCTGATCATTTTTCA-TTTTTTGACTCATG
** * *
3578703 ATTT-ATTTTCGAGCATTTTT-ATTTCTTTGACTCGT-
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
** * *
3578738 ATTTAATGTTGATC--GTTT--TTTTTT-ACTCATC
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * * *
3578769 ATTTAATTTTGGTCA-TTTTCATTTTCCT-ACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTT-TTGACTCATG
* * * * **
3578804 GTCTAAT-CTTAGTCA-TTTTCAATTTTTGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *** * *
3578839 GTTTAATCCTCATTGGTTTACATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3578875 CTTTAATCCTTG-TC-GTTTTCATTTTCTAACGTGTTG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGAC-TCATG
* *
3578911 -CTTAATCCTTATCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3578945 ATTTAATCATGGT-A-ATTTCATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3578979 GTATAAT-CTCGATCGTTTTTCATTTTTTGACTCATCG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCAT-G
* * * **
3579016 -TTTAATCCT-A--ATTGCTTTCACTTTCTAACTTGTG
1 ATTTAATCCTGATCATT--TTTCATTTTTTGACTCATG
* ** * * * *
3579050 GTTTAATCCT-AGT-GGTTTTCATTTTCTCATTTATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * *
3579085 GTTTAGTCCTAATC-GTTTTAATTTTTTGACT--TG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** ** * * **
3579118 CACTTTAATTTTGGCCA-TTTTCAATTTTTAACTTGTG
1 -A-TTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * * *
3579155 TTTTAGT-CTG--CCTATTTTCATTTTCTGATTCGTA
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
** * *
3579189 ATTTAATTTTGATAATTTTCATTATCATATTCTTTTTTTGACTCGTG
1 ATTTAATCCTG---A---TCA-T-T--T-TTCATTTTTTGACTCATG
* * * * *
3579236 GTTTAGT-CTCTATCA-TTTTCATTTTCTAACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * * ** *
3579271 ATTTAATTTTAATAATTTTTTGTTTAATCTTGA-TCATTTTC
1 ATTTAATCCTGATCATTTTTCATTT--T-TTGACTCA---TG
* **
3579312 ATTTTCCAACTCGTGATTTAATTTTGTCATTTTTCATTTTTTGACTTGTG
1 A-TTT--AA-TCCTG-----A-----TCATTTTTCATTTTTTGACTCATG
* * * * *
3579362 CTTTAATCCT-AGT-GTTTTTTATTTTTTGACTCGTT
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3579397 ATTTAATCTTGGTCATTTTT-ATTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * **
3579432 GTTTAATTCC-CAAC-GTTTTCTTTTTTTGACTTGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
** * * *
3579467 ATTTAATTTTGGTCATTTTT-ATTTCTCTGACTCTTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * * *
3579503 GTTTAATCC---CCATTGTCATCATTTTCTGACTCGTG
1 ATTTAATCCTGATCATT-T-TTCATTTTTTGACTCATG
* * ** * * **
3579538 GTTTAAT-CTCGATCGTTTTTCATTTACTAAATGGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3579574 GTTTCAT-CTCGGT--TGTTTTCATTTTTTGACTCGTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* * * ** * *
3579609 GTGTAATCCTTG-TCA-TTTTAATTTGCTAACTCGTG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* * * * *
3579644 GTTTAAT-CTCAATTATTTTT-AGTTTTAGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * * *
3579679 ATTT-ATTTTCAGTCATTTTT-GTTTTCTGACTCCA-G
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACT-CATG
* **
3579714 ATTTAAT-TTCGATCA-TTTTCATTTTTCAACT-AGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
* * *
3579749 GTTTAATCCT-AGTCA-TTTTCATTTTCTGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * *
3579784 ATTTAGT-TTCAGTCATTTTT-ATTTCTTTAACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTT-TTTGACTCATG
* * * *
3579820 ATTTAATGCT-AGGCA-TTTTCATTCTTTGACTCATC
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3579855 ATTTAAT-TTCGGTCGA--TTTCATTTTTTGACTTATG
1 ATTTAATCCT-GATC-ATTTTTCATTTTTTGACTCATG
* * * * * **
3579890 GTCTAATCTTGGTCA-TTTTCACTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** * * * *
3579925 GTTTAATCCTCATTGTCTTACATTTTCTAACTCAT-
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
*
3579960 ACTTTAATCCCTG-TCA-TTTTCATTTTTTGA-TGCGTTG
1 A-TTTAAT-CCTGATCATTTTTCATTTTTTGACT-C-ATG
3579997 -TTTAATCCTTG-TCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* * * **
3580031 ATTTAATCCTTATCA-TTCTCATTCTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * * * ** *
3580066 GTATCAT-CTAGGTCATTTTTTAGTTTCTGACTTGTC
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * **
3580102 ATTTAAT-CTCGATC-GCTTTCATTTTCTGACTTGTGG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCAT-G
* ** * ** * * * * *
3580138 TTTTAATGTTGGT--GGTTCCATTTTCTCACGCAAG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3580172 GTTTAGT-CTTAGTTA-TTTTCATTTTCCGACT--TG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3580205 CACTTTAATTCC-GATC-GTTTTCATTTTTTAACTC-TT
1 -A-TTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3580241 ATTTTAATCC-CAGCCA-TTTTCATTTTCTGACTCGTA
1 A-TTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
**
3580277 ATTTAATTTTGGTAATTTTCATTATCATTTTCATTTTTTGACTCATG
1 ATTTAATCCT-G--A---TC---AT--TTTTCATTTTTTGACTCATG
* * *
3580324 GTTTAAT-CTCAATCA-TTTTCATTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * **
3580359 ATTTAAT-TTGGATCATTTTT-ATTTCTCTAACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* * *
3580395 ATTTAATACC-GATCA-TTATCAATTTTTGACTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3580430 ATTTAAT-CTAAGTTA-TTTTCATTTTCTAACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3580465 GTTTAATCCCGATCA-TTTTCATTTTTTGACCCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3580500 GTTTAATCAT-AGTCGTTTTT-ATTTTCTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3580535 ATTTAATTCGGGTCA-TCTT-ATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3580569 GTTTAATTCTGGTCATTTTT-ATTTCTCTGACTCACG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* *
3580605 GTTTAATCCCTG-T--TGTCTTCATTTTTTTGACTCATG
1 ATTTAAT-CCTGATCAT-TTTTCA-TTTTTTGACTCATG
* * * **
3580641 GTTTAATCCAT-ATCATTTTTCATTTTCTAACTGGTG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* * * * * * *
3580677 GTTTCAT-CTCGGTC-GTTTTCATTTTCTAACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3580712 GTTTAATCCCT-ATCA-TTTTAATTTTTTGACTTATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * * * *
3580747 GTTTAACCCCAGTTC-TTTTT-AGTTTTAGACTCGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* *
3580782 ATTTAAT-TTAGATCATTTTT-ATTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
*
3580817 ATTTTAATTTCT-AT--TGTTTTCATTTTTTGACT-AGTG
1 A-TTTAA-TCCTGATCAT-TTTTCATTTTTTGACTCA-TG
* * * *
3580853 GTTTAATCC-CAGTCA-TTTTCATTTTCTGATTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3580888 A-TTATTTCTGGTCATTTTT-ATTTCTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * *
3580923 ATTTAAT-GTCGATCA-TTTTCATTTTTTTACTTATCG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCAT-G
* * * * *
3580959 -TTTAAT-TTCGGTCA-TTTTCATTTTCTGCCTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * **
3580993 GTCTAATCACAG-TCA-TTTTCACTTTTTGACTTGTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* ** *
3581028 GTTTAATCCTTG-TTGTTTTAT-ATTTTCTGACTCATG
1 ATTTAATCC-TGATCATTTT-TCATTTTTTGACTCATG
* * * * * * **
3581064 CTATAATCAAT-ATC-GTTTTCATTTTCTGGCATGTTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGAC-TCATG
*
3581100 -TTTAATCCCT-ATCATTTTT-ATTTTTTGACTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3581134 ATTTAAT-CTCGATTATTTTTCATTTTCTGAGTCATTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
* * *
3581171 -TTT-ATTCTCA--ATTGCTTTCATTTTTTGACTAATG
1 ATTTAATCCTGATCATT--TTTCATTTTTTGACTCATG
* ** * * * *
3581205 TTTTAATCCT-AGT-GGTTTTCATTTTCTCATTCAAG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * * * *
3581240 GTTCAGTCCT-AGT--TGTTTTAATTTTCTAACTTGCACTTTAA
1 ATTTAATCCTGA-TCAT-TTTTCATTTTTTGAC-T-CA---T-G
* * *
3581281 ACCTTAATTAACTG-TCACTGATTTTCA-TTTTTGACT-A-A
1 A-TTTAA-T-CCTGATCA-T--TTTTCATTTTTTGACTCATG
** * *** * * **
3581319 ACCTAAT-TTAGAAATCAAAATAC-TTGGTTAAACCATATCAT-
1 ATTTAATCCT-G--ATCATTTTTCATT-TTTTGA-C---TCATG
* * * * *
3581360 TTTTGACATCGTGATTTAAACGATCATTTTTATTTCTCTGACTTATG
1 ATTT-A-ATCCTGA--T---C-AT--TTTTCATTT-TTTGACTCATG
*
3581407 AATTAA---T-ATCAATGGTTTTCATTTTTTGACTCATG
1 ATTTAATCCTGATC-AT--TTTTCATTTTTTGACTCATG
* * * *
3581442 ATTTGAT-CTCAGTCA-TTTTCATTTTCTAAC-CTATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTC-ATG
* * * * *
3581477 GTTTAAT-CTCGATC-GTTTTCATTTTCTGACCCTTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* *
3581512 ATTTAATCCT-AGCCA-TTTTCATTTTCTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * * * **
3581547 ATTTAGT-GTAAGT-ATTTTTTATTTTCTAACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * ** * **
3581582 GTTTAATCCTGGTGGTTTTT-ATTTTCTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3581617 A-TTAAT-CTCGATTA-TTTTCATTTTACT-ACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTT-TTGACTCATG
* * * **
3581651 GTTTAATTCC--ATCA-TTTTCATTTTCTAACTTGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3581685 ATTTATTTCT-AGTCATTTTT-ATTTCTCTGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTT-TTTGACTCATG
* * * *
3581721 GTTTAATCCTCGTGGTTTAATCCTTATCTTTT-AATTTTTAACTCGTG
1 ATTTAAT-C-C-T-G----AT-C--AT-TTTTCATTTTTTGACTCATG
* * * *
3581768 -GTTAATCC-CAGTCA-TTTTCAGTTTTAGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
*
3581802 ATTTAAT-TTCGATCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * *
3581837 ATTTAATTTTGATCA-TTTTCTTTTTTTAACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * *
3581872 GTTTAATCC-CAGTC-GTTTTCATTTTTTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * **
3581907 ATTTAAT-TTCGATCATTTTT-ATTTTTTAACTTTTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * ** *
3581942 ATTTAATGTTGTTCA-TTTTCATTTTTTGACTTGTC
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * * * * *
3581977 ATTTAATTTTGAT-AATTTTCATTTTCTAACTTAAG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3582012 GTCTAAT-CTCGGTCATTTTT-ACTTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* ** * * * * **
3582047 GTTTAATCCTCG-TTGTTTTACAATTTGTAACTTTTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3582083 CTTTAATCCCTG-TCATTTTT-ATTTTTTTACTTAAG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
3582118 ATTTAAT-CTCGATCATTTTT-ATTTTTTGACTCAT-
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* *
3582152 AGTATAATCCTGATCATTTTTCATTTTTTGACTAATCG
1 A-TTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
* * * * * **
3582190 -TTCAATCCCGATCA-CTTTCATATTCTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * * ** * * * *
3582224 GTTTCTTCTTGGT-GGTTTTCATTTTCTCACTAAGG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3582259 GTTTAGTCCT-AGTCA-TTTTCATTTTCTAAGTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * * * **
3582294 CTTTGAT-TTCAGC-TATTTTCATTTTTTAACTTGTG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * ** *
3582329 TTTTAAT-CTCGACCA-TTTTCATTTTTTGACTTGTA
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
*
3582364 ATTTAATTCTGGTAATTTTCATTATCATTTTCATTTTTTGACTCATG
1 ATTTAATCCT-G--A---TC---AT--TTTTCATTTTTTGACTCATG
*
3582411 GTTTAAT-CTCGATCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * **
3582446 ATTTAAT-TTCGATCATTTTT-ATTTCTCTGACTGGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
3582482 ATTTAATACC-GATCA-TTTTCATTTTTTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3582517 ATTTAAT-ATCG-TCA-TTTTCGTTTTCTT-ACCCATG
1 ATTTAATCCT-GATCATTTTTCATTTT-TTGACTCATG
* ** *
3582551 GTTTAAT-CTAGATCA-TTTTCA-TTTTCAAATCTATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTC-ATG
* * *
3582586 GTTTAGTCCCT-ATCA-TTTTCATTTTCTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* *
3582621 ATTTAAT-CTAGGTCATTTTT-ATTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
*
3582656 GTTTAATCCT-ACTCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* ** * * *
3582691 ATTTAAT-CTTAGT-GGTTTTCATTTTCTAACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3582726 GTTTAATTCC-CA-CCTTTTTCATTTTTTGACTCGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
** * *
3582761 ATTTAATTTTGGTAATTTTT-ATTTCTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * *
3582797 GTTTAATCCCCG-T--TTCTTCATTTTTTGACTCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3582831 GTTTAATCCTAATCATTTTTCATTTTCTGACTGGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * ***
3582867 GTTTCAT-CTCAGTC-GTTTTCAAAATTTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * *
3582902 GTTTGAAT-CTCACTCA-TTTTAATTTTCTAACTCATG
1 ATTT-AATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * **
3582938 GTTTAAT-CTCAGTCA-TTTTCAGTTTTAGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3582973 ATTTAAT-TTCAATCATTTTT-ATTTTATGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
*
3583008 ATTTAAT-ATCG-TCATTTTT-ATTTTTTGACT-AGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
* ** *
3583042 GTTTAATCCCAATCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3583077 ATTTAGTTCCAG-TTATTTTT-ATTTCTTTGACT-AGTG
1 ATTTA-ATCCTGATCATTTTTCATTT-TTTGACTCA-TG
* * *
3583113 ATTTAAT-GTCGGTCA-TTTTCATTTTTTGACTTATCG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCAT-G
* * * * *
3583149 -TTTAAT-TTCAATCA-TTTT-ATTTTCTAACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * **
3583182 ATCTAAT-CTCGGTCA-TTTTCACTTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * ** * *
3583217 GTTTAATCTTCATTGTTTTACATTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3583253 CTTTAATCACTG-TC-GTTTTCATTTTTTGA-TGCATTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACT-CA-TG
3583289 -TTTAATCCCT-ATCATTTTT-ATTTTTTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3583323 CA-TTAATCC-CAT-TTGTTTTCATTTTTTGACAT-GTG
1 -ATTTAATCCTGATCAT-TTTTCATTTTTTGAC-TCATG
* * * *
3583358 GTATAATCCTGATCATTTTTCAATTTATGACTCATTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
** *
3583395 -TTTAAT-C-GATC-GCTTTCATTTTTTGACTCCT-
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * * *
3583426 AGTTTAATCCTGGT-GGTTTTCATTTTCTCACTCAAG
1 A-TTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** * *
3583462 GTTTAGTCCCAATCA-TTTTCATTTTCTAACTC--G
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3583495 CACTTTAAT-TTCGGT-AGTTTTCATTTTTTAACTCATG
1 -A-TTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* ** * * *
3583532 TTTTAATCCCAACCA-TTTTCATTTTCTGACTCATA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * * *
3583567 ATTTAATTTTGATAATTTTCATTATCATTTTCATTTTCTAACTCGTG
1 ATTTAATCCTG---A---TC---AT--TTTTCATTTTTTGACTCATG
* **
3583614 GTTTAAT-CTCGAT--TGTTTTCATTTTTTGACTTGTG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* **
3583649 ATTTAAT-TTCGATCATTTTT-ATTTCTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* * *
3583685 ATTTAGTACC-AAT--TGTTTTCATTTTCTGACTCATG
1 ATTTAAT-CCTGATCAT-TTTTCATTTTTTGACTCATG
* * *
3583720 ATTTAATCTCTG-TCA-TTTTCA-TTTCTAACCCATG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* *
3583754 GTTTAATCCT-AGTCA-TTTTCATTTTCTGAC-CTATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTC-ATG
* * *
3583789 GTTTAATCCTTG-TTA-TTTT-AATTTTTGACTCATG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* * **
3583823 ATTTAAT-CTGGGTCATTTTT-ATTTTCTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
*
3583858 ATTTAAT-CTCG-GC-TGTTTTCATTTTTTGACTCATG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* * ** *
3583893 GTTTAATTCC-CAT--TGTTTTCATTTCCTGACTCGTG
1 ATTTAA-TCCTGATCAT-TTTTCATTTTTTGACTCATG
** * * **
3583928 ATTTAATTTTGGTCATTTTT-ATTTCTCTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * *
3583964 GTTTAATCCTCG-T--TGTCTTCATTTTCTGACTCATG
1 ATTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* ** **
3583999 GTTTAATCCCAATCATTTTTCATTTTTTGACTGGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * * **
3584035 GTTCCAT-CTGGGTCA-TTTTCATTTTTTGAGTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3584070 GTTTAATCCCTG-TC-GTTTTAATTTTCTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* ** * * * *
3584105 GTTTAATCCCAATCGTTTTT-AGTTTTAGACTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3584140 ATTTAAT-TTAAGTTATTTTT-ATTTTCTGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3584175 ATTTAATTCTG-T-TTGTTTTCATTTTTTGACT-AGTG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCA-TG
* * *
3584210 GTTTAATCCT-AGTCA-TTTTCATTTTCTGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3584245 GTCTAAT-CTCGATCA-TTTTCACTTTTTGACTTATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * **
3584280 GTTTAATCCCCG-TTATTTTACATTTTTTGGCTTGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3584316 CTTTAATACCTG-TCA-TTTTCATTTTCTGA-TGAGTTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCA--TG
**
3584352 -TTTAATCCCT-ATCATTTTT-ATTTTTTGACTTGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
*
3584386 ATTTAATCCTAATCATTTTTCATTTTTTGACTCATCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
** *
3584423 -TTTAATCCTGATC-GCTTTCATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** * *
3584457 GTTTAAT-CTTACTGGTTTTT-ATTTTTTCACTCAAG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * ** * *
3584492 GTTTAGTCCCAATCA-TTTTCATTTTCTAACT--TG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3584525 CGTGTTAAT-TTCGATC-GTTTTCAGTTTTTAACTCATG
1 -AT-TTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * *
3584562 TTTTAATCCT-AGCCA-TTTTCATTTTCTAACTCGTA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** * **
3584597 ATTTAATTAGGGTAATTTTCATTATCATTTTTGTTTTCTGACTCATG
1 ATTTAA-T--CCTGA---TCATT-T--TTCAT-TTTT-TGACTCATG
* * * *
3584644 GTTTAATCTTGATCATTTTTTGGTTATTTTTATTTTTTGACTTATG
1 ATTTAATCCTGATCA---------T-TTTTCATTTTTTGACTCATG
* ** * * *
3584690 ATTTGATTTTGGTCA-TTTTCATTTTTTGAGTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3584725 GTTTAATTCTGGTCA-TTTTCATCTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3584760 ATTTGAT-TTCAGTCATTTTT-ATTTCTTTGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTT-TTTGACTCATG
* * * ** *
3584796 ATTTAATGCT-AGTCA-TTTTCATTTTTGGAGTTGTC
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * *
3584831 ATTTAAT-TTCGATC-GTTTTCATTTTCTAACTCACG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *
3584866 GTTTAAT-CTCGATCA-TTTTCACTTTTTGATTTATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* ** ** * **
3584901 GTTTAATCCCCATTGTTTTACATTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3584937 CTTTAAACCT-AGTCA-TTTTCAGTTTTTGACACGTTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTC-ATG
* * * *
3584973 -CTTAATCCCT-ATCA--TGT--TTTTTTGAATCGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * *
3585004 ATTTAATCCTGGT--TGTTTTCATTTTTTAACTCGTG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * *
3585039 GTATAATCGTTG-TCATTTTTCATTTTTTGAC-C-TG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
3585073 TTATTTAATCC--A--ATTGCTTTCATTTTTTGACTCATG
1 --ATTTAATCCTGATCATT--TTTCATTTTTTGACTCATG
* ** * *
3585109 ATTTAATCCTGAT-AGTTTTCATTTCCTCACTCAAG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3585144 GTTTAGTCC-CAGTCA-TTTTCATTTTTTGACTCACAC
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCA-TG
* ** * * ** *
3585180 ATTTTCATTTTTTAACTCATGTTTT-AATCCTAG-C-CAT-
1 A-TTT-A-ATCCTGA-TCAT-TTTTCATTTTTTGACTCATG
* * * * * * *
3585217 TTTTATTTTCTGACTCGTGATTT-A-ATTTTG-GT--T-
1 ATTTA-ATCCTGA-TCAT-TTTTCATTTTTTGACTCATG
* *
3585250 ATTT--TCGTTATCATTTTT-ATTTTTTGACT--TG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
3585281 TAGTTTAAT-CTCGAT--TGTTTTCATTTTTTGACTCATG
1 -A-TTTAATCCT-GATCAT-TTTTCATTTTTTGACTCATG
* * * * **
3585318 ATTTAGT-TTCAATCATTCTT-ATTTCTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
*
3585354 ATTTAATACTGATCA-TTTTCATTTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTT-TGACTCATG
** * ** * * * *
3585390 ACCTAAT-CTCAATTGTTTTT-GTTTTCTAACCCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * *
3585425 GTTTAATCTTGGTCA-TTTTCATTTTCTAACCCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3585460 GTTTAATCGTGGTCA-TTTTCATTTTTTGACTCATCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
*
3585496 -TTTAAT-CTAAGTCATTTTT-ATTTTTTGACT-AGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCA-TG
* * **
3585530 GTTCAATCCT-AGTGGTTTTT-ATTTTTTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3585565 ATTTAATCTTGAT--TGTTTTCATTTTCTAACTCATG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * *
3585600 GTTTAATTCC-CATCA-TTTTCATTTTCTGACTCGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * **
3585635 GTTTAATCTTGATCGTTTTTCATTTTCTGATTGGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3585671 GTTTCATCTCT-ATCA-TTTTCATTTTCTGATTCATG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * ** * * * * *
3585706 GTTTGATCCTTG-TC-GCTTTAATTTTCTAATTCGTG
1 ATTTAATCC-TGATCATTTTTCATTTTTTGACTCATG
* * * * **
3585741 GTTTAGTCCT-AGTC-GTTTTCAGTTTTAAACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* ** * *
3585776 ACTTAATTTTGGTCATTTTT-ATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * *
3585811 ATTTGATTTTGGTCA-TTTTCGTTTTTTGACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
** *
3585846 GCTTAATCCT-AGTCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * ** *
3585881 ATTTGATTCC-AATTGTTTTT-GTTTCTTTGACTCATG
1 ATTT-AATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * *
3585917 ATTTAATGCTGGTCA-TTTTCATTTTTTGACTCGTT
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3585952 ATTTAAT-TTCGATCA-CTTTCATTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * **
3585987 ATTTAATCTTTG-TCA-TTTTCACTTTTTGGCTTGTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* ** * * **
3586022 GTTTAATACCTG-TTGTTTTACATTTTCTGACTTGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3586058 CTTTAATCCCT-ATCA-TTTTCATTTTCTAACGCATT
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
3586093 ATTTAATCCCTG-TCATTTTT-ATTTTTTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
*
3586128 ATTTAATTCTGAT--TGTTTTCATTTTTTGACTCAT-
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* ** * * *
3586162 AGTATAATCCTGATTGTTTTTCATTTTCTGACTTATC
1 A-TTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** *
3586199 ATTTAATCCCGATC-GCTTTCATTTTTTGACTCAAG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * * *
3586234 GTTTAATCCT-AGT-GGTTTTCATTTTTTCACTTAGG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3586269 GTTTAGTCCT-AGTCA-TTTTCATTTTCTGACTTATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * *
3586304 CTTTAATTCT-AGTCA-TTTTCA---TTTAACTCAT-
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * **
3586335 ATTTTAATCTTGGTCA-TTTTCATTTTCTGACTCACA
1 A-TTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* ** * **
3586371 ATTTAATTCTAGTAATTTTCATTATCGTTTTTGTTTTTTAACTTGTG
1 ATTTAATCCT-G--A---TC---AT--TTTTCATTTTTTGACTCATG
* * *
3586418 GTTTAAT-CTCAATCA-TTTTCATTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * **
3586453 ATTTAATTTTGATCATTTTT-ATTTCTGTGGTTCATG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* *
3586489 ATTTAATAGC-GGTCA-TTTTCATTTTCTTG-CTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTT-TTGACTCATG
* * * * * *
3586524 ATTTAATCTTGGTCA-TTTTCAGTTTCTAACCCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3586559 GTTTAATCCAG-TCA-TTTTCATTTTTTGACCCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3586593 GTTTAAT-CTAAGTCATTTTT-ATTTTCTGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
3586628 ATTTAAT-CTCGATCA-TTTTCATTTTTTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * *
3586663 GTTTAATTCC-CATCA-TTTTCATTTTCTGACTCATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * * * * *
3586698 GTTTAATCCTGGTTATTTTT-ATTTCTCTAAGTCGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* *
3586734 GTTTAATCC---CCATTGTCTTCATTTTTTGATTCTGACTCATG
1 ATTTAATCCTGATCATT-T-TTCA---TTT--TT-TGACTCATG
* * * * * * *
3586775 GTTTAATTCTGGTCATTTTT-ATTTCTCTAATTCGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * *
3586811 GTTTAATCC---CCATTGTCTTCATTTTCTGACTCATG
1 ATTTAATCCTGATCATT-T-TTCATTTTTTGACTCATG
* * * * * **
3586846 GTTTAATCCTAATCGTTTTTCATTTTCTGATTGGT-
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3586881 AGTTTCAT-CTCGATCA-TTTTCATTTTCTGACTCGTTG
1 A-TTTAATCCT-GATCATTTTTCATTTTTTGACTC-ATG
* * *
3586918 -TTTAATTCCT-AT-AGTTTTAATTTTTTGACTTATG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3586952 -GTTACT-CTCGATCATTTTT--TGTTTTAGACTTATG
1 ATTTAATCCT-GATCATTTTTCAT-TTTTTGACTCATG
* * * * *
3586986 ATTTAAT-TTCAGCCATTTTT-ATTTTCTGACTCGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* ** *
3587021 ATTTGATTTTGGTCA-TTTTCATTTTTTGACT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* *
3587056 GTTTAAT-CTGATCA-TTTTCATTTTTTGACTCGTTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTC-ATG
* ** ***
3587091 -CTTAATTTTGATCATTTTT-ATTTTTTGACTTGCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * **
3587125 ATTTAAT-CTCAATCA-TTTTCACTTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* ** *
3587160 GTTTAATCCCT-ATTGTTTTACATTTTTTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * * *
3587196 CTTTAATCCCGATC-GTTTTCATTTTTCGACACGTTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTC-ATG
* **
3587232 -TTTAATGCCT-ATC-TTTTTTATTTTTTGACTTGTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* **
3587266 ATTTAATCCCGATCA-TTTTCATTTTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3587301 GTATAAT-CTCGATCATTTTTCATTTTTTGACTCATCG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCAT-G
* ** * *
3587338 -TTTAATCCCGATC-GCTTTCATTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** * * * *
3587372 GTTTAATCCTGGTGGTTTTT-A--TTCTCATTTAGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* ** * * *
3587406 -TTTAGTCCCAATCGTTTTT-ATTTTCTGACTCGT-
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3587439 ACTTTAATTCCAG-T--TGTTTCATTTTTTAACTCATG
1 A-TTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3587474 TTTTAATCTTGATCA-TTTTAATTTTTTGACTCATA
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * *
3587509 ATTTAATTATGGTAGTTTTCATTATCATTTTCATTTTCTGACTCGTG
1 ATTTAATCCT-G-A----TC---AT--TTTTCATTTTTTGACTCATG
* * * * *
3587556 GTTTAATCTTGATC-GTTTTCATTTTCTAACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * **
3587591 ATTTAATTTCC--ATCATTTTT-ATTTCTCCGGCTTGTG
1 ATTTAA--TCCTGATCATTTTTCATTT-TTTGACTCATG
* * * * *
3587627 ATTTAAT-ATCGATC-GTTTTCATTTTCTGATTTATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * * *
3587662 ATTTATTCTTAATC-GTTTTCATTTTCTAACCCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3587697 GTTTAAT-CTCGGTCA-TTTTCATTTTCTAACCCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * *
3587732 GTTTAATTCAGGTCATTTTT-ATTTTCTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * * *
3587767 ATTTAATTGTGGTCATTTTT-ATTTTTTGATTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* *
3587802 ATTTAAT-CTCGGTCA-TTTTCATTTTTTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * *
3587837 GCTTAATTCC-CATCA-TTTTCATTTTTTGACTCGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
** * **
3587872 ATTTAATTTTGGTCATTTTT-ATTTCTTTGACTTGTG
1 ATTTAATCCTGATCATTTTTCATTT-TTTGACTCATG
* * * * * *
3587908 GTTTAATCTCCG-T--TGTCTTCATTTTCTAACTCAAG
1 ATTTAATC-CTGATCAT-TTTTCATTTTTTGACTCATG
* * ** * * *
3587943 GTTAAATTGTGATCGTTTTTCATTTTCTGGCT-AGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * * * *
3587979 GTTTCAT-TTCGATCA-TTTTCATTTTCTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * *** *
3588014 GTTTAATCTTTG-TCA-TTTTAATTTTCCAACTCAAG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3588049 GTTTAATCC-CAGTCA-TTTTCAGTTTTAGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * **
3588084 ATTTAAT-TTCGACCATTTTT-ATTTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * *
3588119 ATTTGAT-TTCGGTC-GTTTTCATTTTTTCACT-ACTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCA-TG
* * **
3588154 GTTTAAT-CTCGATCA-TTTTCATGTTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
** * * * **
3588189 ATTCGAT-TTCGGTCATTTTT-ATTTCTTTGATTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* * *
3588225 ATTTAATGCC-AATCA-TTTTCATTTTTTGACTCGTT
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * * **
3588260 ATTTAAT-TTAAGTC-GTTTTCATTTTTTTGATTCGCG
1 ATTTAATCCTGA-TCATTTTTCA-TTTTTTGACTCATG
* * *
3588296 ATTTAAT-CTCAGTTA-TTTTCACTTTTTGACT--TG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3588329 ---TAGT--T--T-AATTTTCATTTTTTGACT--TG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** * *
3588355 TAGTTTAATCCCTG-TTGTTTTACACTTTTTGACT-AGTG
1 -A-TTTAAT-CCTGATCATTTTTCATTTTTTGACTCA-TG
* * * *
3588393 CTTTAATCCCTG-TC-CTTTTCATTTTTTAACGCATTG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCA-TG
* *
3588429 -TTTAATCCCG-TCATTGTTT-ATTTTTTGACTCGTG
1 ATTTAATCCTGATCATT-TTTCATTTTTTGACTCATG
* * **
3588463 ATTTAATCC-CAGTCA-TTTTCATTTTTTAACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
*** * * * * *
3588498 GCATAATCC-CAGTCATTTTTTATTTTTCGACTCGTCA
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCAT-G
* * *
3588535 ATTTAAATCTTGGA-C---TTTCATTTTCCTGACTCGTG
1 ATTT-AATCCT-GATCATTTTTCATTTT-TTGACTCATG
* * * * *
3588570 CCTTGTAAAT-TTCGATCAATTTTTTTATTTTTTTGACTCGGTC
1 -ATT-T-AATCCT-GATC-A-TTTTTCA-TTTTTTGACTC-ATG
* *
3588613 ATTTAATCTCAGA-C-TTTTTCATTTTTTGACTCGTG
1 ATTTAATC-CTGATCATTTTTCATTTTTTGACTCATG
* * * * *
3588648 CTTTTAAT-TTCAGTCA-TTTTCATTTTTTGACTCGTA
1 -ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * *
3588684 ATTTAATTCCTGTAATTTTCATTATTGTTTTCATTTTCTAACCCTTG
1 ATTTAA-TCCTG--A---TC---A-T-TTTTCATTTTTTGACTCATG
* * * *
3588731 GTTTAATCTTGATCA-TTTTCATTTTCTGACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * ***
3588766 ATTTAATCTTGGTC-GTTTTCATTTTCAAAC-CTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTC-ATG
* * *
3588801 GTTTAATCCTGGT--TGTTTTCATTTTTTGACCCATG
1 ATTTAATCCTGATCAT-TTTTCATTTTTTGACTCATG
* * * *
3588836 GTTTAAT-CTAGGTCCTTTTT-ATTTTCTGACTCATG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * **
3588871 GTTTAAT-CTCAATCGTTTTT-ATTTTTCT-AATTGTG
1 ATTTAATCCT-GATCATTTTTCATTTTT-TGACTCATG
* * *
3588906 ATTTAATCTTGATCA-TTTTGATTTTTTTGACTCGTG
1 ATTTAATCCTGATCATTTTTCA-TTTTTTGACTCATG
* * * *
3588942 ATTTAATTCC-CATCA-TTTTCATTTTCTAACTCGTG
1 ATTTAA-TCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3588977 ATTTAATTCC-GGTCATTTTT-GTTTCTCTGACTCGTG
1 ATTTAA-TCCTGATCATTTTTCATTT-TTTGACTCATG
* * * *
3589013 GTTTAATTCC----CATTGTCGTCATTTTCTAACTCATG
1 ATTTAA-TCCTGATCATT-T-TTCATTTTTTGACTCATG
** *
3589048 ATTTAATCCCAATCTTTTTTCATTTTTTGAC-CAGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * * * *
3589084 GTTTCAT-CTCGATC-GTTTTCATTTTCTGACTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGACTCATG
* * * * * *
3589119 GTTTAAACC-CAGTCA-TTTTAAGTTTTAGACTCATG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
** *
3589154 ATTTAATTTTGGTCATTTTT-ATTTTTTGACTCATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* **
3589189 ATTTGATTCC-GATTGTTTTTGC--TTTTTGACT-AGTG
1 ATTT-AATCCTGATCATTTTT-CATTTTTTGACTCA-TG
* * *
3589224 GTTTAATCCCTG-TTA-TCTTCATTTTTTGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* ** *
3589259 GTTTAATCCCAACCATTTCTT-ATTTTTTGACT-AGTG
1 ATTTAATCCTGATCATTT-TTCATTTTTTGACTCA-TG
* * * * * *
3589295 GTTTCAT-TTCGGTC-GTTTTCATTTTTT-ACCTCGTG
1 ATTTAATCCT-GATCATTTTTCATTTTTTGA-CTCATG
* * * * * *
3589330 GTTTAGTCCCT-ATC-GTTTTAATTTTCTAACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
** * *
3589365 GCTTAATCCCTG-TCATTTTT-AGTTTTAGACTCATG
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* ** * *** *
3589400 ATATAATTTTGGTCATTTTT-ATTTTCAAACTCGTG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * * *
3589435 ATTTGATTCCAG-CCATTTTT-GTTTTTTGACT-AGTG
1 ATTT-AATCCTGATCATTTTTCATTTTTTGACTCA-TG
* * *
3589470 GTTTAATCCTGGTCA-TTTTC-TTTTTCTGACTTATG
1 ATTTAATCCTGATCATTTTTCATTTTT-TGACTCATG
* * * * **
3589505 ATTTGAT-TTCGATC-GTTTTAATTTCTTTGACTTGTG
1 ATTTAATCCT-GATCATTTTTCATTT-TTTGACTCATG
* *
3589541 ATTTAATGCCTG-TCA-TTTTCATTTTTTGACTCGTC
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * * **
3589576 ATTTAAT-TTCAGTCA-TTTTCATTTTCTGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* * * * *
3589611 GTTTAATCTTGGTC--TTTTCACTTTTTGACTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * *
3589645 GTTTAATCCCT-ATTC-TTTTACATTTTTTGACTCGTG
1 ATTTAAT-CCTGA-TCATTTTTCATTTTTTGACTCATG
* *
3589681 TTTTAATCCCTG-TCA-TTTTCATTTTTTGA-TGCATT
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACT-CATG
** *
3589716 ATTTAATCCCTG-TCATTTTT-ATTTTTTGACTTGTT
1 ATTTAAT-CCTGATCATTTTTCATTTTTTGACTCATG
* * **
3589751 ATTTAATTCT-AGTCATTTTTTATTTTTTGACTTGTG
1 ATTTAATCCTGA-TCATTTTTCATTTTTTGACTCATG
* ** ** ** **
3589787 GTAGAATCCCAATTGTTTTTCATTTCCTGACTCATCG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCAT-G
* ** * *
3589824 -TTTAATCCCGATC-GCTTTCATTTTCTGACTTATG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** * * *
3589858 GTTTAATCCTGGT-GGTTTTCATTTTCTCACTCAGG
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
* * ** *
3589893 GTTTAGTCCCAATCA-TTTTCATTTTCTGACTCAT-
1 ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
** *
3589927 ACTTTAATTTTGGTCA-TTTTCATTTTTT
1 A-TTTAATCCTGATCATTTTTCATTTTTT
3589955 AAATAGCGTT
Statistics
Matches: 28620, Mismatches: 6793, Indels: 6928
0.68 0.16 0.16
Matches are distributed among these distances:
25 1 0.00
26 22 0.00
27 25 0.00
28 19 0.00
29 51 0.00
30 30 0.00
31 124 0.00
32 251 0.01
33 468 0.02
34 2548 0.09
35 16908 0.59
36 5909 0.21
37 528 0.02
38 157 0.01
39 58 0.00
40 71 0.00
41 165 0.01
42 92 0.00
43 62 0.00
44 112 0.00
45 68 0.00
46 226 0.01
47 618 0.02
48 56 0.00
49 16 0.00
50 11 0.00
51 1 0.00
52 4 0.00
53 2 0.00
54 1 0.00
55 13 0.00
56 3 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (36 bp):
ATTTAATCCTGATCATTTTTCATTTTTTGACTCATG
Found at i:3551361 original size:47 final size:47
Alignment explanation
Indices: 3551305--3551394 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 47
3551295 ATCTCTGTTA
* *
3551305 TTTTTATTTTTTGACTCGTAATTTAATTTCAGTAATTTTCATTATCG
1 TTTTCATTTTTTGACTCGTAATTTAATTTCAATAATTTTCATTATCG
** *
3551352 TTTTCATTTTTTGACTCGTGGTTTAATTTCAATCATTTTCATT
1 TTTTCATTTTTTGACTCGTAATTTAATTTCAATAATTTTCATT
3551395 TTTTGACTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (47 bp):
TTTTCATTTTTTGACTCGTAATTTAATTTCAATAATTTTCATTATCG
Found at i:3551418 original size:18 final size:18
Alignment explanation
Indices: 3551395--3551454 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
3551385 CATTTTCATT
3551395 TTTTGACTTATGATTTAA
1 TTTTGACTTATGATTTAA
* *
3551413 TTTTGATCATTTTTATTT--
1 TTTTGA-C-TTATGATTTAA
*
3551431 TTTTGACTTGTGATTTAA
1 TTTTGACTTATGATTTAA
*
3551449 TATTGA
1 TTTTGA
3551455 TCGTTTTCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 7 0.21
17 1 0.03
18 17 0.52
19 1 0.03
20 7 0.21
ACGTcount: A:0.23, C:0.05, G:0.12, T:0.60
Consensus pattern (18 bp):
TTTTGACTTATGATTTAA
Found at i:3551658 original size:69 final size:68
Alignment explanation
Indices: 3551471--3551766 Score: 192
Period size: 69 Copynumber: 4.2 Consensus size: 68
3551461 TCATTTTCTA
* * * * * * *
3551471 ACTCATGATTTAATCTCAGTTGTTTT-TAG-TTTCTAATCCACGGTTTAATCTTGATCATTTTCA
1 ACTCATGGTTTAATCCCA-TTGTTTTAT-GTTTTC-AAT-CATGATTTAATCTGGGTCATTTTTA
*
3551534 TTTTTTG
62 TTCTTTG
* * ** * * * ** *
3551541 ACTCGTGGTTTAATCCTATCATTTTCATTTTTTGACTTGTGATATAATCTGGGTCATTTTTATTC
1 ACTCATGGTTTAATCCCATTGTTTT-ATGTTTTCAATCATGATTTAATCTGGGTCATTTTTATTC
3551606 TTTG
65 TTTG
* ** *
3551610 ACTCATGGTTTAATCCTGATTGTTTT-TGTTTTCATATCATGATTTAATCTCGATTGCA--TTCA
1 ACTCATGGTTTAATCC-CATTGTTTTATGTTTTCA-ATCATGATTTAATCT-GGGT-CATTTTTA
3551672 TT-TTCTG
62 TTCTT-TG
* * *
3551679 ACTCATGGTTTAATTCCCATTGTTTTCATTTTTTGACTCATGATTTAATTCT-GGTCATTTTTAT
1 ACTCATGGTTTAA-TCCCATTGTTTT-ATGTTTTCAATCATGATTTAA-TCTGGGTCATTTTTA-
3551743 TTCTTTG
62 TTCTTTG
3551750 ACTCATGGTTTAATCCC
1 ACTCATGGTTTAATCCC
3551767 CATAGTCTTC
Statistics
Matches: 172, Mismatches: 38, Indels: 32
0.71 0.16 0.13
Matches are distributed among these distances:
68 10 0.06
69 83 0.48
70 45 0.26
71 32 0.19
72 2 0.01
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.51
Consensus pattern (68 bp):
ACTCATGGTTTAATCCCATTGTTTTATGTTTTCAATCATGATTTAATCTGGGTCATTTTTATTCT
TTG
Found at i:3551805 original size:140 final size:138
Alignment explanation
Indices: 3551530--3551782 Score: 346
Period size: 139 Copynumber: 1.8 Consensus size: 138
3551520 CTTGATCATT
* * * **
3551530 TTCATTTTTTGACTCGTGGTTTAATCCTATCATTTTCATTTTTTGACTTGTGATATAATCTGGGT
1 TTCATTTTCTGACTCATGGTTTAATCCCATCATTTTCATTTTTTGACTCATGATATAATCTGGGT
** * * **
3551595 CATTTTTATTCTTTGACTCATGGTTTAATCCTGATTGTTTTTGTTTTCATATCATGATTTAATCT
66 CATTTTTATTCTTTGACTCATGGTTTAATCCCCATAGTCTTCATTTTCATATCATGATTTAATCT
3551660 CGATTGCA
131 CGATTGCA
** *
3551668 TTCATTTTCTGACTCATGGTTTAATTCCCATTGTTTTCATTTTTTGACTCATGATTTAATTCT-G
1 TTCATTTTCTGACTCATGGTTTAA-TCCCATCATTTTCATTTTTTGACTCATGATATAA-TCTGG
3551732 GTCATTTTTATTTCTTTGACTCATGGTTTAATCCCCATAGTCTTCATTTTC
64 GTCATTTTTA-TTCTTTGACTCATGGTTTAATCCCCATAGTCTTCATTTTC
3551783 TGACCTGTGT
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
138 22 0.22
139 39 0.40
140 37 0.38
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (138 bp):
TTCATTTTCTGACTCATGGTTTAATCCCATCATTTTCATTTTTTGACTCATGATATAATCTGGGT
CATTTTTATTCTTTGACTCATGGTTTAATCCCCATAGTCTTCATTTTCATATCATGATTTAATCT
CGATTGCA
Found at i:3552272 original size:31 final size:33
Alignment explanation
Indices: 3552224--3552289 Score: 109
Period size: 31 Copynumber: 2.1 Consensus size: 33
3552214 CTTTAATCCC
3552224 TATTATTTTCATTTTCTGATGCATTATGATTTT
1 TATTATTTTCATTTTCTGATGCATTATGATTTT
*
3552257 TATT-TTTT-ATTTTCTGATGCATTGTGATTTT
1 TATTATTTTCATTTTCTGATGCATTATGATTTT
3552288 TA
1 TA
3552290 ATCCCTGTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 24 0.75
32 4 0.12
33 4 0.12
ACGTcount: A:0.20, C:0.08, G:0.11, T:0.62
Consensus pattern (33 bp):
TATTATTTTCATTTTCTGATGCATTATGATTTT
Found at i:3553427 original size:71 final size:70
Alignment explanation
Indices: 3553238--3553484 Score: 237
Period size: 71 Copynumber: 3.5 Consensus size: 70
3553228 TTTCAAATTA
* * * * *
3553238 GACTCGCGATTTAATTTCAGTCATTTTTATTTTTTTGACTCGTAATTT-GATTTCGATCATTTTC
1 GACTCGTGATTTAATCTCAGTCATTTTCATTTTTTT-ACTCATAATTTAG-TTTCGATCATTTTT
3553302 ATTTTTT
64 ATTTTTT
* * * * * *
3553309 GACTAGTGGTTTAATCTCAATGATTTTCATTTTTTGACTCTTAATTTAGTTTCGATCATTTTTAT
1 GACTCGTGATTTAATCTCAGTCATTTTCATTTTTTTACTCATAATTTAGTTTCGATCATTTTTAT
3553374 TTCTTT
66 TT-TTT
* * * * * *
3553380 GACTCGTGATTTAATGCT-AGTTATTTTCATTTTTTTACTCATGATTTAATTTTGACCATTTTTG
1 GACTCGTGATTTAAT-CTCAGTCATTTTCATTTTTTTACTCATAATTTAGTTTCGATCATTTTTA
*
3553444 TTTTCT
65 TTTTTT
* * * **
3553450 AACTCATGCTTTAATCTTTGTCATTTTCATTTTTT
1 GACTCGTGATTTAATCTCAGTCATTTTCATTTTTT
3553485 GACTTGTGGT
Statistics
Matches: 145, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
69 2 0.01
70 56 0.39
71 85 0.59
72 2 0.01
ACGTcount: A:0.20, C:0.14, G:0.11, T:0.55
Consensus pattern (70 bp):
GACTCGTGATTTAATCTCAGTCATTTTCATTTTTTTACTCATAATTTAGTTTCGATCATTTTTAT
TTTTT
Found at i:3554092 original size:70 final size:72
Alignment explanation
Indices: 3554005--3554173 Score: 202
Period size: 71 Copynumber: 2.4 Consensus size: 72
3553995 ATATTGATCG
* * *
3554005 TTTTCATTTTGTAACTCATGATTTAATCTC-AGTTGCTTTCA-TTCTCTGACTCATGGCTTAATT
1 TTTTCATTTTTTGACTCATGATTTAATCTCTAGTTACTTTCATTTCTCTGACTCATGGCTTAA-T
3554068 CCC-ATCA
65 CCCTATCA
* * * * *
3554075 TTTTCATTTTTTGACTCATGATTTAAT-TCTGGTTATTTTTATTTCTCTGATTCATGGTTTAATC
1 TTTTCATTTTTTGACTCATGATTTAATCTCTAGTTACTTTCATTTCTCTGACTCATGGCTTAATC
**
3554139 CCTATTG
66 CCTATCA
*
3554146 TTTTCATTTTTTGACTCATGGTTTAATC
1 TTTTCATTTTTTGACTCATGATTTAATC
3554174 CTAATCATTT
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
69 2 0.02
70 36 0.43
71 46 0.55
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.52
Consensus pattern (72 bp):
TTTTCATTTTTTGACTCATGATTTAATCTCTAGTTACTTTCATTTCTCTGACTCATGGCTTAATC
CCTATCA
Found at i:3554423 original size:18 final size:18
Alignment explanation
Indices: 3554400--3554454 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
3554390 GATTTTCATT
3554400 TTTTGACTCATGATTTAG
1 TTTTGACTCATGATTTAG
* *
3554418 TTTTGA-TCAT-TTTTATT
1 TTTTGACTCATGATTTA-G
*
3554435 TCTTTGACTTATGATTTAG
1 T-TTTGACTCATGATTTAG
3554454 T
1 T
3554455 GCTAATCATT
Statistics
Matches: 28, Mismatches: 5, Indels: 7
0.70 0.12 0.17
Matches are distributed among these distances:
16 4 0.14
17 5 0.18
18 11 0.39
19 4 0.14
20 4 0.14
ACGTcount: A:0.20, C:0.09, G:0.13, T:0.58
Consensus pattern (18 bp):
TTTTGACTCATGATTTAG
Found at i:3554584 original size:141 final size:141
Alignment explanation
Indices: 3553895--3558834 Score: 480
Period size: 141 Copynumber: 35.0 Consensus size: 141
3553885 AATTTTCATC
* * * * * *
3553895 ATCATTTTCATTTTTTGACTCGTGATTTAAATTT-GATCGTTTTTATTTTCTGACTCATGATTTA
1 ATCATTTTCATTTTTTGACTCATGATTT-AATTTCGATCATTTTCATTTTTTGACTAATGCTTTA
* * * * * ** * * * *
3553959 ATTTTAATCATTTTTATTTTTTGGACTTGTGATTTAATATTGATCGTTTTCATTT-TGTAACTCA
65 ATCTTGATCATTTTCACTTTTT-AACTCATGATTTAATCTTGATCATTTTCATTTCTCTGACTCA
3554023 TGATTTAAT-CTCA
129 TGATTTAATCCT-A
* *** * * ** * * * *
3554036 GTTGCTTTCATTCTCTGACTCATGGCTTAATTCCCATCATTTTCATTTTTTGACTCATGATTTAA
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTCGATCATTTTCATTTTTTGACTAATGCTTTAA
* * * * * * * ** *
3554101 T-TCTGGTTATTTTTA-TTTCTCTGATTCATGGTTTAATCCCT-ATTGTTTTCATTT-TTTGACT
66 TCT-TGATCATTTTCACTTT-T-TAACTCATGATTTAAT-CTTGATCATTTTCATTTCTCTGACT
*
3554162 CATGGTTTAATCCTA
127 CATGATTTAATCCTA
* * * * * * * * ** *
3554177 ATCATTTTTCATTTTCTAACT-AGTCATTTCATCTCGGTCATTTTCATTTTCTGAGTTGTGGTTT
1 ATCA-TTTTCATTTTTTGACTCA-TGATTTAATTTCGATCATTTTCATTTTTTGACTAATGCTTT
* * * * * * * * *** * *
3554241 AATCCCT-ATCATTTTAATTTTTTGATTCGTGGTATAATCCCAATCGTTTTCAATTT-T-AGACT
64 AAT-CTTGATCATTTTCACTTTTTAACTCATGATTTAATCTTGATCATTTTC-ATTTCTCTGACT
** * *
3554303 TGTGATTTAAT-TTCG
127 CATGATTTAATCCT-A
* *
3554318 ATCATTTTTATTTTTTGACTCATGATTTAATTTCGATCATTTTCATTTTTTGACTAATGGTTTAA
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTCGATCATTTTCATTTTTTGACTAATGCTTTAA
* * * * * * * *
3554383 TCTTGATGATTTTCATTTTTTGACTCATGATTTAGTTTTGATCATTTTTATTTCTTTGACTTATG
66 TCTTGATCATTTTCACTTTTTAACTCATGATTTAATCTTGATCATTTTCATTTCTCTGACTCATG
* *
3554448 ATTTAGTGCTA
131 ATTTAATCCTA
* * * ** *
3554459 ATCATTTTCATTTTTTGACTTATGATTTAATTTTGGTTGTTTTCATTTTTTGACTCATGCTTTAA
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTCGATCATTTTCATTTTTTGACTAATGCTTTAA
* * **
3554524 TCTCTG-TCATTTTCACTTTTTAACTTATGGTTTAATCCTTG-TTGTTTTACATTT-TCTGACTC
66 TCT-TGATCATTTTCACTTTTTAACTCATGATTTAAT-CTTGATCATTTT-CATTTCTCTGACTC
* * *
3554586 GTGCTTTAATCCTT
128 ATGATTTAATCCTA
* * * ** **
3554600 ATCGTTTTCA--TTTT---T--TG-TTTAATCCTT-G-TCATTTTTATTTTTTGATTTGTAATTT
1 ATCATTTTCATTTTTTGACTCATGATTTAAT--TTCGATCATTTTCATTTTTTGACTAATGCTTT
* * * * * * * ** *
3554655 AATCCTGGTCATTTTCATTTTTTAA-TGCATGGTATAATCCTGGTTGTTTTTCATTT-TTTGACT
64 AATCTTGATCATTTTCACTTTTTAACT-CATGATTTAAT-CTTGATCATTTTCATTTCTCTGACT
** * *
3554718 TGTCATTTTAATCCTG
127 CATGA-TTTAATCCTA
*** * * * * * * * * * *
3554734 ATTGCTTTCATTTTCTGACTCATGGTTTAA-TCCTAGTGATTTGT-ATTTTCTCACTCAGGGTTT
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTCGA-TCATTT-TCATTTTTTGACTAATGCTTT
* ** * * * * * * * * * * *
3554797 AGTC-CCAGTCTTTTTCATTTTTTGACTCGTGCTTTAAT-TATGGTCGTTTTAATTTTTTTAACT
64 AATCTTGA-TCATTTTCACTTTTTAACTCATGATTTAATCT-TGATCATTTTCATTTCTCTGACT
** *
3554860 TGTGTTTTAAT-CTCA
127 CATGATTTAATCCT-A
* * * * *
3554875 GTCATTTTCATTTTTTGACTCGTAATTTAATTTC-AGTAATTTTCATTATAATTTTTATTTTCTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTCGA-TCATTTTCA-T-T--TTTTGA----CTA
* * * * * *
3554939 ACTTGTGGTTTAATCTTGTTCATTTTCA-TTTTTGACTCGTGATTTAATTTTGATCATTTTTATT
57 A----TGCTTTAATCTTGATCATTTTCACTTTTTAACTCATGATTTAATCTTGATCATTTTCATT
*
3555003 TTTCTGACTCATGATTTAAT-CTCA
118 TCTCTGACTCATGATTTAATCCT-A
* * * * * ** * * * *
3555027 GTCATTTTCATTTTCTAACCCA-CAGTTTAATCCCAAT--TGTTTCATTTTCTGACTCATGATTT
1 ATCATTTTCATTTTTTGACTCATGA-TTTAATTTCGATCAT-TTTCATTTTTTGACTAATGCTTT
** * * ** * *
3555089 AATC-CAAGTCATTTTTA-TTTTCTAACTCATGGTTTAATGC-CAATCATTTTTATTT-TTTGAC
64 AATCTTGA-TCATTTTCACTTTT-TAACTCATGATTTAAT-CTTGATCATTTTCATTTCTCTGAC
* *
3555150 TTATGATTTAAT-CTCG
126 TCATGATTTAATCCT-A
** * * * * * ** **
3555166 ATCGCTTTCATTTTCTAACTCATGGTTTAATTCCCATCATTTTTCATTTTTTGACTCGTAATTT-
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTCGATCA-TTTTCATTTTTTGACTAATGCTTTA
* * * * * * * * ** *
3555230 ATTTTTAGTCATTTTTATTTCTTTGACTCATGGTTTAATCCTCATTGTCTTCATTT-TCTGACTC
65 ATCTTGA-TCATTTTCACTT-TTTAACTCATGATTTAATCTTGATCATTTTCATTTCTCTGACTC
*
3555294 ATGGTTTAATCTCGGTA
128 ATGATTTAATC-C--TA
* * * * * ** * ** *
3555311 GT--TCTTCATTTTCTGACT-A-G-TTTCATCTCGATTGTTTTCATTGTTTGACTTGTGGTTTAA
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTCGATCATTTTCATTTTTTGACTAATGCTTTAA
* * * * * * * * *
3555371 TCCCT-ATCATTTTAAATTTCTACCTCATGATTTGATCCTGATCGTTTTCAGTTT-T-AGACTCA
66 T-CTTGATCATTTTCACTTTTTAACTCATGATTTAATCTTGATCATTTTCA-TTTCTCTGACTCA
** *
3555433 TGATTTAATTTTG
129 TGATTTAATCCTA
* * ** * * * *
3555446 ATCA-TTT--TTTTCTAACTTGTGATTTAATTT-AAGTCGTTTTCATTTTTTGACTAGTGGTTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTCGA-TCATTTTCATTTTTTGACTAATGCTTTA
* * * ** * * ** * * *
3555507 ATCTTGGTCATTTTCATTTTTTGACTTGTGATTTAGT-TTCAGTTGTTTTTATTTCTTTGGCTCA
65 ATCTTGATCATTTTCACTTTTTAACTCATGATTTAATCTTGA-TCATTTTCATTTCTCTGACTCA
* ** *
3555571 TAATTTAAAGCTG
129 TGATTTAATCCTA
* * * * **
3555584 ATCATTTTCATTTTTTGACTCATCATTTAA-TTCTGGTCATTTTCATTTTCTGAATTGTGCTTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTC-GATCATTTTCATTTTTTGACTAATGCTTTA
* * * * * * * *
3555648 ATCTT-AGTCATTTTCACATTTTGACTTATGGTTTAGTCCTCATTC-TTTTACATTT-TCTAACT
65 ATCTTGA-TCATTTTCACTTTTTAACTCATGATTTAATCTTGA-TCATTTT-CATTTCTCTGACT
* *
3555710 CGCT-CTTTAATCCCT-
127 C-ATGATTTAAT-CCTA
** * * *
3555725 AT-AGTTTTCATTTTTTGA-TGCATTG-TTTAATCCCTATCATTTTTATTTTTTGACTCAA-GAT
1 ATCA-TTTTCATTTTTTGACT-CA-TGATTTAATTTCGATCATTTTCATTTTTTGACT-AATGCT
* * * * * * * * * *
3555786 TTAATCCTGGTCATTTTCATTTTTTGACTCGTGGTATAATCCTAATCATTTTTCATTTAT-TGAC
62 TTAATCTTGATCATTTTCACTTTTTAACTCATGATTTAATCTTGATCA-TTTTCATTTCTCTGAC
**
3555850 TCATTG-TTTAATCTCGG
126 TCA-TGATTTAATC-CTA
* * * ** * * * * * *
3555867 TTGC--TTTCATTTTCTAACTCATGGCTTAA-TCCTAGTCGTTTTCATTTTCTTG-CTTAGGGTT
1 AT-CATTTTCATTTTTTGACTCATGATTTAATTTCGA-TCATTTTCATTTT-TTGACTAATGCTT
* ** * * * * * * *
3555928 TAGTGCCAG-TCATTTTCA-TCTTCTAACTCGTGCTTTAATTTTGGTCGTTTTCATTT-T-TAAC
63 TAAT-CTTGATCATTTTCACT-TTTTAACTCATGATTTAATCTTGATCATTTTCATTTCTCTGAC
* *
3555989 TCGTGTTTTAATCC-A
126 TCATGATTTAATCCTA
* * * * * * *
3556004 GTAATTTTCA--TTTAGACTCATAATTTAGTTCTAATAATTTCATTATCATTTTTATTTTCTGAC
1 ATCATTTTCATTTTTTGACTC---A--T-GAT-T--TAATTTC--GATCATTTTCATTTTTTGAC
* * * * * * * * *
3556067 TAATGGTTTAATCTTGATCGTTTTAATTTTTTGACTCCTAATTTGAT-TTCGATCATTTTCGTTT
55 TAATGCTTTAATCTTGATCATTTTCACTTTTTAACTCATGATTTAATCTT-GATCATTTTCATTT
** *
3556131 CTCTGACTTGTGATTTAA-CACCA
119 CTCTGACTCATGATTTAATC-CTA
* * * * * ** *
3556154 AT-ATTTTCCATTTTTTGACTCGTGATTTAATCTCGGT-AGTTTTCATTTTCTAACCCATGGTTT
1 ATCATTTT-CATTTTTTGACTCATGATTTAATTTCGATCA-TTTTCATTTTTTGACTAATGCTTT
** * * * ** * *
3556217 AATC-CCAGTAATTTTCATTTTTTGAACT-ATGGTTTAATCTTGGGCATTTTAATTT-TTTGACT
64 AATCTTGA-TCATTTTCACTTTTT-AACTCATGATTTAATCTTGATCATTTTCATTTCTCTGACT
** * *
3556279 TGTGATTTAATCTTG
127 CATGATTTAATCCTA
* ** * ** * * * * ** * ** *
3556294 GTTGTTTCCATTTTTTGACTTGTGGTATAA-TCCTGGTTGTTTTTATTTTCTT-ACTTGTGATTT
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTC-GATCATTTTCATTTT-TTGACTAATGCTTT
* ** * * * * ** *
3556357 AATC-TCAGTTGTTTTCATTTTTTGACTCGTGGTTTAAT-TCCCATCATTTTCATTT-TATGACT
64 AATCTTGA-TCATTTTCACTTTTTAACTCATGATTTAATCT-TGATCATTTTCATTTCTCTGACT
* * * *
3556419 CCTAATTTAATTCTG
127 CATGATTTAATCCTA
* * * * * * ** * * *
3556434 GTCATTTTTATTCCTTTGACTCGTGGTTTAATCTCCG-TTGTTTTCATTTTTTAACTCATGGTTT
1 ATCATTTTCATT-TTTTGACTCATGATTTAAT-TTCGATCATTTTCATTTTTTGACTAATGCTTT
* * * * * * * ** * *
3556498 AATCGTGATCTTTTTTCATTTTTTGA-TTAGTGGTTTCATCTCAATCGTTTTTATTT-TCTGACT
64 AATCTTGATC-ATTTTCACTTTTTAACTCA-TGATTTAATCTTGATCATTTTCATTTCTCTGACT
* *
3556561 CGTGGTTTAATCTCT-
127 CATGATTTAATC-CTA
* ** * * * * * *
3556576 ATCATTTTAATTTTTTGACTTGTG-TTTAATCTT-GATCATTTTTAATTTTAGTCTTATGATTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAAT-TTCGATCATTTTCATTTTTTGACTAATGCTTTA
* * ** *
3556639 AT-TTCGATCATTTTTA-TTTTCTAACTCGTGATTTAAATC-CAATCGTTTTCAATTT-T-TGAC
65 ATCTT-GATCATTTTCACTTTT-TAACTCATGATTT-AATCTTGATCATTTTC-ATTTCTCTGAC
* * * *
3556699 TAAGGGTTTAATCCTG
126 TCATGATTTAATCCTA
* * * * * ** **
3556715 GTCATTTTCATTTTTTGACTCATGATTT-AGTTCTGAACGTTTTTATTTCTTTGACTTGTAATTT
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTC-GATCATTTTCATTT-TTTGACTAATGCTTT
* * * * * * ** *
3556779 AATATCGATCATTTTCA-TTCTTTGACTCGTCATTTAAT-TCTGGTCATTTTTGTTT-TCTAACT
64 AATCTTGATCATTTTCACTT-TTTAACTCATGATTTAATCT-TGATCATTTTCATTTCTCTGACT
* * *
3556841 CATGGTTTAATCTTG
127 CATGATTTAATCCTA
* ** * ** * * *
3556856 ATCATTTTCACTTTTTGACTTGTGGTTTAATCCTT--ATTGTTTTACATTTTTTAACTCATGGTT
1 ATCATTTTCATTTTTTGACTCATGATTTAAT--TTCGATCATTTT-CATTTTTTGACTAATGCTT
* * * * * *
3556919 TAATCCCT-ATCATTTTCATTTTTTGA-TGCATTG-TTTAATCCAT-ATCATTTTTATTT-TTTG
63 TAAT-CTTGATCATTTTCACTTTTTAACT-CA-TGATTTAAT-CTTGATCATTTTCATTTCTCTG
**
3556979 ACTCATGATTTAATCCCG
124 ACTCATGATTTAATCCTA
** * * * * * **
3556997 ATTGTTTTCATTTTTTGACTCGTCG-TATAA-TCCCAGTCTTTTTTCATTTTTTGACTCGT-CAT
1 ATCATTTTCATTTTTTGACTCAT-GATTTAATTTCGA-TC-ATTTTCATTTTTTGACTAATGC-T
* ** * * ** * * **
3557059 TTAATCCTGATCGCTTTCA-TGTTTAGACTCGTGGCTTAATCCTGGTGGTTTTCATTT-TCTCG-
62 TTAATCTTGATCATTTTCACTTTTTA-ACTCATGATTTAATCTTGATCATTTTCATTTCTCT-GA
* * * * *
3557121 TTTAGGGTTTAGTCCTA
125 CTCATGATTTAATCCTA
* * * * * * ** * * *
3557138 GTCATTTTCATTTTCTAACCCGTGCTTTAA-TTCAGGCCATTTTCATTTTTTAACTTATGTTTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTC-GATCATTTTCATTTTTTGACTAATGCTTTA
* ** *
3557202 AGC-CCAGTCATTTTCA-TTTTCTAACTCTTAATTTAATTTCAATAATTTTCATT-ATCATTTTC
65 ATCTTGA-TCATTTTCACTTTT-TAACTC---A--TGA-TT---TAA---TC-TTGATCATTTTC
* *
3557264 ATTT-TCTAACTCATGGTTTAATCTCT-
115 ATTTCTCTGACTCATGATTTAATC-CTA
* * * * * ** *
3557290 GTCATTTTCATTTTTTGACTCATGATTTAATTTCAATCATTTTTATTTCTCTAACTTGTGATTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTCGATCATTTTCATTT-TTTGACTAATGCTTTA
* * * * * * *
3557355 A-CATCGATCGTTTCCA-TTTTCTAACTCATGATTTAATCTTGGTCATTTTCGTTT-TCTAACCC
65 ATC-TTGATCATTTTCACTTTT-TAACTCATGATTTAATCTTGATCATTTTCATTTCTCTGACTC
3557417 ATGATTTAATCCTA
128 ATGATTTAATCCTA
* * * * ** * * * ** *
3557431 GTCGTTTTCATTTTCTGAC-CAATGGTTTAATCCCAATCGTTTTCATTTTCTGACTTGTGATTTA
1 ATCATTTTCATTTTTTGACTC-ATGATTTAATTTCGATCATTTTCATTTTTTGACTAATGCTTTA
* * * * * ** * *
3557495 ATCTGGGTCATTTTTA-TTTTCTAACCCATGGTTTAATC-CCAGTCATTTTTATTT-TCTAACTC
65 ATCTTGATCATTTTCACTTTT-TAACTCATGATTTAATCTTGA-TCATTTTCATTTCTCTGACTC
* *
3557557 ATGATTTAATCTTG
128 ATGATTTAATCCTA
* * * * * * * * ** *
3557571 A-CAGCTTTAATTTTTTGACTCATGGTTTAATTCCAATCATTTTAATTTTCTGAATTGTGATTTA
1 ATCA-TTTTCATTTTTTGACTCATGATTTAATTTCGATCATTTTCATTTTTTGACTAATGCTTTA
* * * * * * ** *
3557635 ATTTTGATCATTTTTATTTCTTTGACTCATGGTTTAATCCTCG-TTGTCTTCATTT-TCTGACTC
65 ATCTTGATCATTTTCACTT-TTTAACTCATGATTTAAT-CTTGATCATTTTCATTTCTCTGACTC
* * *
3557698 TTGGTTTAATACTGA
128 ATGATTTAATCCT-A
* ** * ** * * * * *
3557713 TTGTTTTTCATTTTCT-A--GGTGGTTTCATCTT-GATCATTTTTATTTTCTGACTCATGCTTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAAT-TTCGATCATTTTCATTTTTTGACTAATGCTTTA
* * * * * * * ** *
3557774 ATCCCTG-TCATTTTAATTTTTTGACTCAAGGTTTAA-CTTTAGTTGTTTTCAGTTT-T-AGACT
65 AT-CTTGATCATTTTCACTTTTTAACTCATGATTTAATCTTGA-TCATTTTCA-TTTCTCTGACT
* *
3557835 CGTGATTTAAAT-TTA
127 CATGATTT-AATCCTA
* * * * * * *
3557850 GTCACTTTT-ATTTTTTGATTCGTGATTTAA-TTCCAGTCGTTTTCATTTTTTGACTAGTGGTTT
1 ATCA-TTTTCATTTTTTGACTCATGATTTAATTTCGA-TCATTTTCATTTTTTGACTAATGCTTT
* * * * * * * * * *
3557913 AATCCTAATCATTTTCATTTTTTGACTCGTGATTTAGTTTTGGTCATTTTTATTTCTTTGACTCA
64 AATCTTGATCATTTTCACTTTTTAACTCATGATTTAATCTTGATCATTTTCATTTCTCTGACTCA
3557978 TGATTTAATGCC-A
129 TGATTTAAT-CCTA
* * * * * ** *
3557991 ATCATTTTCATTTTTTGACTCGTCATTTAA-TTCCAGTCATTTTCCTTTTTTAACTTGTGGTTTA
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTCGA-TCATTTTCATTTTTTGACTAATGCTTTA
* * ** * * *
3558055 ATCTTGGTCATTTTCACTTTTTGACTTGTGGTTTAATCCCT-ATTATTTTACATTT-TCTGACTC
65 ATCTTGATCATTTTCACTTTTTAACTCATGATTTAAT-CTTGATCATTTT-CATTTCTCTGACTC
**
3558118 ATCCTTTAATCCCT-
128 ATGATTTAAT-CCTA
* * * * ** * * ** *
3558132 ATCGTTTTCATTTTCT-AATGCGTTG-TTTAATCCCTG-TTATTTTTATTTTTTGACTTGTGATT
1 ATCATTTTCATTTTTTGACT-C-ATGATTTAATTTC-GATCATTTTCATTTTTTGACTAATGCTT
* ** * * * * * *
3558194 TAAACACGATCATTTTCATTTTTTGACT--TGTAGTATAATCCTGGTCATTTTTCATTT-TCTAA
63 TAATCTTGATCATTTTCACTTTTTAACTCATG-A-TTTAATCTTGATCA-TTTTCATTTCTCTGA
* * *
3558256 CTCGTCG-TTTAATTCTG
125 CTCAT-GATTTAATCCTA
** * ** *
3558273 AT-AGTTTTCATTTCTTT--CTCATGGCTTAATCTT-GGTGGTTTTCATTTTCTTG-CTTAA-GG
1 ATCA-TTTTCATTT-TTTGACTCATGATTTAAT-TTCGATCATTTTCATTTT-TTGAC-TAATGC
* * ** *
3558332 TTTAGTCCT-AGTCATTTTCA-TTTTCTAACTTGTGCTTTAAT-TTCGATCATTTTCATTT-T-T
61 TTTAATCTTGA-TCATTTTCACTTTT-TAACTCATGATTTAATCTT-GATCATTTTCATTTCTCT
* * * *
3558392 AACTCGTGTTTTAAT-CTCG
123 GACTCATGATTTAATCCT-A
* * * *
3558411 ATCATTTTCATTTTTTGACTCTTAATTTAA-TTCTGATAATTTTCATTATCGTTTTCATTTTTAA
1 ATCATTTTCATTTTTTGACTCATGATTTAATTTC-GATCATTTTC---A------T--TTTTTGA
* * * * * * *
3558475 CTCATGGTTTAATCTCGATCATTTTCATTTTTTGACTCGTGATTTAAT-TTCGATCATTTTTATT
54 CTAATGCTTTAATCTTGATCATTTTCACTTTTTAACTCATGATTTAATCTT-GATCATTTTCATT
* ** *
3558539 TCTTTGACTTGTGATTTAA-CACTG
118 TCTCTGACTCATGATTTAATC-CTA
* ** * * ** *
3558563 AT--TTTTCCATTTTCTGACTTGTGATTTAATCTTAG-TCATTTTCATTTTTTAACCCATGGTTT
1 ATCATTTT-CATTTTTTGACTCATGATTTAAT-TTCGATCATTTTCATTTTTTGACTAATGCTTT
** * * * * * *
3558625 AATC-CCAGTCATTTTCA-TTTTCTGACCCACGTTTTAATCTCGATCGTTTTCATTT-TCTGACT
64 AATCTTGA-TCATTTTCACTTTT-TAACTCATGATTTAATCTTGATCATTTTCATTTCTCTGACT
3558687 CATGATTTAATCCCT-
127 CATGATTTAAT-CCTA
* * * * * ** * * *
3558702 GTC-GTTTCTATTTTTTGACTCATGGTTTTATCTAAATCATTTTTATTTTTTGACTCATGATTTA
1 ATCATTTTC-ATTTTTTGACTCATGATTTAATTTCGATCATTTTCATTTTTTGACTAATGCTTTA
* * ** * ** *
3558766 AT-TTCAATCATTTTCA-TTTTCTGACTTGTGGTTTAAT-TCCCATCATTTTCATTT-TCTAACT
65 ATCTT-GATCATTTTCACTTTT-TAACTCATGATTTAATCT-TGATCATTTTCATTTCTCTGACT
3558827 CATGATTT
127 CATGATTT
3558835 GATTCTTGTC
Statistics
Matches: 3575, Mismatches: 895, Indels: 659
0.70 0.17 0.13
Matches are distributed among these distances:
132 3 0.00
133 71 0.02
134 34 0.01
135 4 0.00
136 23 0.01
137 79 0.02
138 141 0.04
139 318 0.09
140 813 0.23
141 1291 0.36
142 314 0.09
143 39 0.01
144 6 0.00
145 10 0.00
146 12 0.00
147 59 0.02
148 9 0.00
149 29 0.01
150 61 0.02
151 37 0.01
152 160 0.04
153 60 0.02
154 2 0.00
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.52
Consensus pattern (141 bp):
ATCATTTTCATTTTTTGACTCATGATTTAATTTCGATCATTTTCATTTTTTGACTAATGCTTTAA
TCTTGATCATTTTCACTTTTTAACTCATGATTTAATCTTGATCATTTTCATTTCTCTGACTCATG
ATTTAATCCTA
Found at i:3554621 original size:27 final size:27
Alignment explanation
Indices: 3554590--3554643 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
3554580 TGACTCGTGC
*
3554590 TTTAATCCTTATCGTTTTCATTTTTTG
1 TTTAATCCTTATCATTTTCATTTTTTG
* *
3554617 TTTAATCCTTGTCATTTTTATTTTTTG
1 TTTAATCCTTATCATTTTCATTTTTTG
3554644 ATTTGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.15, C:0.13, G:0.07, T:0.65
Consensus pattern (27 bp):
TTTAATCCTTATCATTTTCATTTTTTG
Found at i:3554758 original size:72 final size:70
Alignment explanation
Indices: 3554631--3554767 Score: 159
Period size: 72 Copynumber: 1.9 Consensus size: 70
3554621 ATCCTTGTCA
* * * *
3554631 TTTTTATTTTTTGATTTGTAATTTAATCCTGGTCATTTTCATTTTTTAATGCATGGTATAATCCT
1 TTTTTATTTTTTGACTTGTAATTTAATCCTGATCACTTTCATTTTTGAATGCATGGTATAATCCT
3554696 GGTTG
66 GGTTG
* ** * *
3554701 TTTTTCATTTTTTGACTTGTCATTTTAATCCTGATTGCTTTCATTTTCTGACT-CATGGTTTAAT
1 TTTTT-ATTTTTTGACTTGT-AATTTAATCCTGATCACTTTCATTTT-TGAATGCATGGTATAAT
3554765 CCT
63 CCT
3554768 AGTGATTTGT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
70 5 0.09
71 13 0.24
72 34 0.62
73 3 0.05
ACGTcount: A:0.18, C:0.14, G:0.12, T:0.55
Consensus pattern (70 bp):
TTTTTATTTTTTGACTTGTAATTTAATCCTGATCACTTTCATTTTTGAATGCATGGTATAATCCT
GGTTG
Found at i:3555099 original size:69 final size:68
Alignment explanation
Indices: 3554994--3555324 Score: 303
Period size: 71 Copynumber: 4.7 Consensus size: 68
3554984 AATTTTGATC
* **
3554994 ATTTTT-ATTTTTCTGACTCATGATTTAATCTCAGTCATTTTCATTTTCTAACCCACAGTTTAAT
1 ATTTTTCA-TTTTCTGACTCATGATTTAATCTCAGTCATTTTCATTTTCTAACTCATGGTTTAAT
3555058 CCCA
65 CCCA
*
3555062 ATTGTTTCATTTTCTGACTCATGATTTAATC-CAAGTCATTTTTATTTTCTAACTCATGGTTTAA
1 ATT-TTTCATTTTCTGACTCATGATTTAATCTC-AGTCATTTTCATTTTCTAACTCATGGTTTAA
*
3555126 TGCCA
64 TCCCA
* * * **
3555131 ATCATTTTTATTTTTTGACTTATGATTTAATCTC-GATCGCTTTCATTTTCTAACTCATGGTTTA
1 AT--TTTTCATTTTCTGACTCATGATTTAATCTCAG-TCATTTTCATTTTCTAACTCATGGTTTA
3555195 ATTCCCA
63 A-TCCCA
* * * * * * * * *
3555202 TCATTTTTCATTTTTTGACTCGTAATTTATTTTTAGTCATTTTTATTTCTTTGACTCATGGTTTA
1 --ATTTTTCATTTTCTGACTCATGATTTAATCTCAGTCATTTTCATTT-TCTAACTCATGGTTTA
3555267 ATCCTC-
63 ATCC-CA
* *
3555273 ATTGTCTTCATTTTCTGACTCATGGTTTAATCTCGGT-AGTTCTTCATTTTCT
1 ATT-T-TTCATTTTCTGACTCATGATTTAATCTCAGTCA-TT-TTCATTTTCT
3555325 GACTAGTTTC
Statistics
Matches: 212, Mismatches: 34, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
68 4 0.02
69 62 0.29
70 53 0.25
71 68 0.32
72 23 0.11
73 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.09, T:0.51
Consensus pattern (68 bp):
ATTTTTCATTTTCTGACTCATGATTTAATCTCAGTCATTTTCATTTTCTAACTCATGGTTTAATC
CCA
Found at i:3556513 original size:71 final size:70
Alignment explanation
Indices: 3556368--3557053 Score: 266
Period size: 71 Copynumber: 9.7 Consensus size: 70
3556358 ATCTCAGTTG
* * * **
3556368 TTTTCATTTTTTGACTCGTGGTTTAAT-TCCCATCATTTTCATTTTATGACTCCTAATTTAATTC
1 TTTTCATTCTTTGACTCGTGGTTTAATCT-CCATCGTTTTCATTTTATGACTCATGGTTTAA-TC
*
3556432 TGGTCAT
64 TGATCAT
* * * *
3556439 TTTT-ATTCCTTTGACTCGTGGTTTAATCTCCGTTGTTTTCATTTTTTAACTCATGGTTTAATCG
1 TTTTCATT-CTTTGACTCGTGGTTTAATCTCCATCGTTTTCATTTTATGACTCATGGTTTAATC-
*
3556503 TGATCTT
64 TGATCAT
* * * * * * * *
3556510 TTTTCATTTTTTGATTAGTGGTTTCATCTCAATCGTTTTTATTTTCTGACTCGTGGTTTAATCTC
1 TTTTCATTCTTTGACTCGTGGTTTAATCTCCATCGTTTTCATTTTATGACTCATGGTTTAATCT-
*
3556575 TATCA-
65 GATCAT
* * * ** * * * * * *
3556580 TTTTAATTTTTTGACTTGT-GTTTAATCTTGATCATTTTTAATTTTA-GTCTTATGATTTAATTT
1 TTTTCATTCTTTGACTCGTGGTTTAATCTCCATC-GTTTTCATTTTATGACTCATGGTTTAATCT
3556643 CGATCAT
65 -GATCAT
* * * * *
3556650 TTTT-ATT-TTCTAACTCGTGATTTAAATC-CAATCGTTTTCAATTTT-TGACTAAGGGTTTAAT
1 TTTTCATTCTT-TGACTCGTGGTTT-AATCTCCATCGTTTTC-ATTTTATGACTCATGGTTTAAT
*
3556711 CCTGGTCA-
63 -CTGATCAT
* * * * * * * * ** ** *
3556719 TTTTCATTTTTTGACTCATGATTTAGT-TCTGAACGTTTTTATTTCTTTGACTTGTAATTTAATA
1 TTTTCATTCTTTGACTCGTGGTTTAATCTC-CATCGTTTTCATTT-TATGACTCATGGTTTAATC
3556783 TCGATCA-
64 T-GATCAT
** ** * ** * *
3556790 TTTTCATTCTTTGACTCGTCATTTAAT-TCTGGTCATTTTTGTTTTCTAACTCATGGTTTAATCT
1 TTTTCATTCTTTGACTCGTGGTTTAATCTC-CATCGTTTTCATTTTATGACTCATGGTTTAATC-
3556854 TGATCA-
64 TGATCAT
* * * * *
3556860 TTTTCACTT-TTTGACTTGTGGTTTAATC-CTTATTGTTTTACATTTTTTAACTCATGGTTTAAT
1 TTTTCA-TTCTTTGACTCGTGGTTTAATCTC-CATCGTTTT-CATTTTATGACTCATGGTTTAAT
3556923 CCCT-ATCA-
63 --CTGATCAT
* * * * * * * *
3556931 TTTTCATTTTTTGA-TGCATTGTTTAATC-CATATCATTTTTATTTTTTGACTCATGATTTAATC
1 TTTTCATTCTTTGACT-CGTGGTTTAATCTC-CATCGTTTTCATTTTATGACTCATGGTTTAAT-
*
3556994 CCGAT--T
63 CTGATCAT
* * * * *
3557000 GTTTTCATTTTTTGACTCGTCGTATAATC-CCAGTCTTTTTTCATTTTTTGACTC
1 -TTTTCATTCTTTGACTCGTGGTTTAATCTCCA-TC-GTTTTCATTTTATGACTC
3557054 GTCATTTAAT
Statistics
Matches: 475, Mismatches: 106, Indels: 68
0.73 0.16 0.10
Matches are distributed among these distances:
68 2 0.00
69 55 0.12
70 180 0.38
71 232 0.49
72 5 0.01
73 1 0.00
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.53
Consensus pattern (70 bp):
TTTTCATTCTTTGACTCGTGGTTTAATCTCCATCGTTTTCATTTTATGACTCATGGTTTAATCTG
ATCAT
Found at i:3556618 original size:105 final size:104
Alignment explanation
Indices: 3556333--3557016 Score: 349
Period size: 106 Copynumber: 6.5 Consensus size: 104
3556323 ATCCTGGTTG
* * * * * * *
3556333 TTTTTATTTTCTTACTTGTGATTTAATCTCAGTTGTTTTCATTTTTTGACTCGTGGTTTAATTCC
1 TTTTTATTTTCTGACTCGTGGTTTAATCTCAATCGTTTTAATTTTTTGACT-ATGGTTTAA-TCC
* * ** * **
3556398 -CATCA-TTTTCATTTTATGACTCCTAATTTAAT-TCTGGTCA
64 TGATCATTTTTCATTTTTTGA-TTATGATTTAATCTC-AATCA
** * * *
3556438 TTTTTATTCCTT-TGACTCGTGGTTTAATCTCCGTTGTTTTCATTTTTTAACTCATGGTTTAATC
1 TTTTTATT--TTCTGACTCGTGGTTTAATCTCAATCGTTTTAATTTTTTGACT-ATGGTTTAATC
* * * * *
3556502 GTGATCTTTTTTCATTTTTTGATTAGTGGTTTCATCTCAATCG
63 CTGATCATTTTTCATTTTTTGATTA-TGATTTAATCTCAATCA
* * *
3556545 TTTTTATTTTCTGACTCGTGGTTTAATCTCTATCATTTTAATTTTTTGACT-TGTGTTTAATCTT
1 TTTTTATTTTCTGACTCGTGGTTTAATCTCAATCGTTTTAATTTTTTGACTATG-GTTTAATCCT
* * * * *
3556609 GATCATTTTT-AATTTTAGTCTTATGATTTAATTTCGATCA
65 GATCATTTTTCATTTTTTG-ATTATGATTTAATCTCAATCA
* * *
3556649 TTTTTATTTTCTAACTCGTGATTTAAATC-CAATCGTTTTCAA-TTTTTGACTAAGGGTTTAATC
1 TTTTTATTTTCTGACTCGTGGTTT-AATCTCAATCGTTTT-AATTTTTTGACT-ATGGTTTAATC
* * * * *
3556712 CTGGTCA-TTTTCATTTTTTGACTCATGATTTAGTTCTGAA-CG
63 CTGATCATTTTTCATTTTTTGA-TTATGATTTA-ATCTCAATCA
* * ** * * * * * * ** *
3556754 TTTTTATTTCTTTGACTTGTAATTTAATATCGATCATTTTCATTCTTTGACTCGTCATTTAATTC
1 TTTTTATTT-TCTGACTCGTGGTTTAATCTCAATCGTTTTAATTTTTTGACT-ATGGTTTAATCC
* * * * * * **
3556819 TGGTCATTTTT-GTTTTCTAACTCATGGTTTAATCTTGATCA
64 TGATCATTTTTCATTTTTTGA-TTATGATTTAATCTCAATCA
* * * * *
3556860 TTTTCACTTTT-TGACTTGTGGTTTAATC-CTTATTGTTTTACATTTTTTAACTCATGGTTTAAT
1 TTTTTA-TTTTCTGACTCGTGGTTTAATCTC-AATCGTTTTA-ATTTTTTGACT-ATGGTTTAAT
*
3556923 CCCT-ATCA-TTTTCATTTTTTGATGCATTG-TTTAATC-CATATCA
62 -CCTGATCATTTTTCATTTTTTGAT-TA-TGATTTAATCTCA-ATCA
* * * * * * *
3556966 TTTTTATTTTTTGACTCATGATTTAATCCCGATTGTTTTCATTTTTTGACT
1 TTTTTATTTTCTGACTCGTGGTTTAATCTCAATCGTTTTAATTTTTTGACT
3557017 CGTCGTATAA
Statistics
Matches: 448, Mismatches: 100, Indels: 62
0.73 0.16 0.10
Matches are distributed among these distances:
104 64 0.14
105 124 0.28
106 215 0.48
107 43 0.10
108 2 0.00
ACGTcount: A:0.20, C:0.15, G:0.11, T:0.54
Consensus pattern (104 bp):
TTTTTATTTTCTGACTCGTGGTTTAATCTCAATCGTTTTAATTTTTTGACTATGGTTTAATCCTG
ATCATTTTTCATTTTTTGATTATGATTTAATCTCAATCA
Found at i:3557274 original size:82 final size:82
Alignment explanation
Indices: 3557175--3557332 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 82
3557165 TAATTCAGGC
* * * *
3557175 CATTTTCATTTTTTAACTTATGTTTTAAGCCCAGTCATTTTCATTTTCTAACTCTTAATTTAATT
1 CATTTTCATTTTCTAACTCATGGTTTAAGCCCAGTCATTTTCATTTTCTAACTCATAATTTAATT
3557240 TCAATAATTTTCATTAT
66 TCAATAATTTTCATTAT
* * * * * *
3557257 CATTTTCATTTTCTAACTCATGGTTTAATCTCTGTCATTTTCATTTTTTGACTCATGATTTAATT
1 CATTTTCATTTTCTAACTCATGGTTTAAGCCCAGTCATTTTCATTTTCTAACTCATAATTTAATT
*
3557322 TCAATCATTTT
66 TCAATAATTTT
3557333 TATTTCTCTA
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
82 65 1.00
ACGTcount: A:0.25, C:0.16, G:0.05, T:0.54
Consensus pattern (82 bp):
CATTTTCATTTTCTAACTCATGGTTTAAGCCCAGTCATTTTCATTTTCTAACTCATAATTTAATT
TCAATAATTTTCATTAT
Found at i:3558419 original size:104 final size:105
Alignment explanation
Indices: 3558200--3558430 Score: 242
Period size: 104 Copynumber: 2.2 Consensus size: 105
3558190 GATTTAAACA
* *
3558200 CGATCATTTTCATTTTTTGACTTGTAGTATAATCCTGGTCATTTTTCATTTTCTAACTCGTCGTT
1 CGATCATTTTCATTTTTTGACTTGAAGTATAATCCTAGTCATTTTTCATTTTCTAACTCGTCGTT
*
3558265 TAATTCTGATAGTTTTCATTTCTTTCTCATGGCTTAATCT
66 TAATTCTGATAGTTTTCATTTCTTACTCATGGCTTAATCT
* * ** * * *
3558305 TGGTGGTTTTCATTTTCTTG-CTT-AAGGTTTAGTCCTAGTCA-TTTTCATTTTCTAACTTGT-G
1 CGATCATTTTCATTTT-TTGACTTGAA-GTATAATCCTAGTCATTTTTCATTTTCTAACTCGTCG
* **
3558366 CTTTAATT-TCGATCA-TTTTCATTT-TTAACTCGTGTTTTAATCT
64 -TTTAATTCT-GAT-AGTTTTCATTTCTT-ACTCATGGCTTAATCT
3558409 CGATCATTTTCATTTTTTGACT
1 CGATCATTTTCATTTTTTGACT
3558431 CTTAATTTAA
Statistics
Matches: 102, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
103 7 0.07
104 64 0.63
105 28 0.27
106 3 0.03
ACGTcount: A:0.18, C:0.17, G:0.12, T:0.53
Consensus pattern (105 bp):
CGATCATTTTCATTTTTTGACTTGAAGTATAATCCTAGTCATTTTTCATTTTCTAACTCGTCGTT
TAATTCTGATAGTTTTCATTTCTTACTCATGGCTTAATCT
Found at i:3559266 original size:139 final size:140
Alignment explanation
Indices: 3559039--3559302 Score: 336
Period size: 139 Copynumber: 1.9 Consensus size: 140
3559029 TTAGACTTGT
* * * * * * *
3559039 GATTTAATTTTGGTCATTTTTATTTTTTGACTTGTGATTTAATTCTGATCATTTTCATTTTTTGA
1 GATTTAATCTCGGTCATTTTCATATTTTAACTTGTGATTTAATACCGATCATTTTCATTTTTTGA
* * *
3559104 CTAGTGGTTTAATCCCTGCCATTTTTATTTTCTAACTCGTGGTTTAAATC-TGATCATTTTAATT
66 CTAGTCGTTTAATCCCTGCCATTTTTATTTTCTAACTAGTGATTT-AATCTTGATCATTTTAATT
3559168 TTTTAACAAAG
130 TTTTAACAAAG
3559179 GATTTAATCTCGGTCATTTTCA-ATTTTAACTTGTGATTTAATACCGATCATTTTCATTTTTTGA
1 GATTTAATCTCGGTCATTTTCATATTTTAACTTGTGATTTAATACCGATCATTTTCATTTTTTGA
* ** * * * *
3559243 CTTGTCGTTTAAT-TTTGGTCATTTTTGTTTTGTAACTAGTGATTTAATCTTGGTCATTTT
66 CTAGTCGTTTAATCCCT-GCCATTTTTATTTTCTAACTAGTGATTTAATCTTGATCATTTT
3559303 CACTTTGACT
Statistics
Matches: 105, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
138 5 0.05
139 81 0.77
140 19 0.18
ACGTcount: A:0.22, C:0.12, G:0.13, T:0.53
Consensus pattern (140 bp):
GATTTAATCTCGGTCATTTTCATATTTTAACTTGTGATTTAATACCGATCATTTTCATTTTTTGA
CTAGTCGTTTAATCCCTGCCATTTTTATTTTCTAACTAGTGATTTAATCTTGATCATTTTAATTT
TTTAACAAAG
Found at i:3559341 original size:104 final size:100
Alignment explanation
Indices: 3558994--3559453 Score: 295
Period size: 104 Copynumber: 4.4 Consensus size: 100
3558984 CGTTTTAATT
** * * * *
3558994 TTTTGACTCATGTTTAATCCCATTCATTTTTAGTTTTAGACTTGTGATTTAATTTTGGTCATTTT
1 TTTTGACTTGTGTTTAATCCC-GTCATTTTCATTTTTTGACTTGTG-TTTAATTTTGGTCATTTT
* * *
3559059 TATTTTTTGACTTGTGATTTAAT-TCTGATCATTTTCA
64 TATTTTTTAACTAGTGATTTAATCT-TGGTCATTTTCA
* * * * * * * * *
3559096 TTTTTTGACTAGTGGTTTAATCCCTGCCATTTTTATTTTCTAACTCGTGGTTTAAATCTGATCAT
1 --TTTTGACTTGT-GTTTAATCCC-GTCATTTTCATTTTTTGACTTGT-GTTTAATTTTGGTCAT
* * *
3559161 TTTAATTTTTTAACAAAG-GATTTAATCTCGGTCATTTTCAA
61 TTTTATTTTTTAAC-TAGTGATTTAATCTTGGTCATTTTC-A
* *
3559202 TTTTAACTTGTGATTTAATACCGATCATTTTCATTTTTTGACTTGTCGTTTAATTTTGGTCATTT
1 TTTTGACTTGTG-TTTAATCCCG-TCATTTTCATTTTTTGACTTGT-GTTTAATTTTGGTCATTT
* *
3559267 TTGTTTTGTAACTAGTGATTTAATCTTGGTCATTTTCA
63 TTATTTTTTAACTAGTGATTTAATCTTGGTCATTTTCA
* ** * **
3559305 CTTTGACTTGTAGTTTAATCCCAGTTGTTTTACATTTTTCGACTCATG-GTTTAATCCCT-GTCA
1 TTTTGACTTGT-GTTTAATCCC-GTCATTTT-CATTTTTTGACT--TGTGTTTAAT-TTTGGTCA
* * *
3559368 TTTTCATTTTCTAACGT-GTTG-TTTAATCCTT-GTCATTTTTA
60 TTTTTATTTTTTAAC-TAG-TGATTTAAT-CTTGGTCATTTTCA
* * * *
3559409 TTTTTTGACTTATGATTTAATCTCGACTGTTTTCATTTTTTGACT
1 --TTTTGACTTGTG-TTTAATCCCGTC-ATTTTCATTTTTTGACT
3559454 CGTTGTATAA
Statistics
Matches: 281, Mismatches: 54, Indels: 41
0.75 0.14 0.11
Matches are distributed among these distances:
103 27 0.10
104 139 0.49
105 87 0.31
106 28 0.10
ACGTcount: A:0.21, C:0.14, G:0.12, T:0.53
Consensus pattern (100 bp):
TTTTGACTTGTGTTTAATCCCGTCATTTTCATTTTTTGACTTGTGTTTAATTTTGGTCATTTTTA
TTTTTTAACTAGTGATTTAATCTTGGTCATTTTCA
Found at i:3560543 original size:141 final size:140
Alignment explanation
Indices: 3560271--3560543 Score: 318
Period size: 141 Copynumber: 1.9 Consensus size: 140
3560261 TTCAGTTTTA
* * *
3560271 GACTCGTGATTTAATTTTGAACAATTTTATTTTTTGACTCGTGATTTAATTCTAGTCATTTTCAT
1 GACTCGTGATTTAATGTCGAACAATTTTATTTTTTGACTCGTGATTTAATTCTAGTCATTGTCAT
* * * **
3560336 TTACTGATTAGTGGTTTAATCTCGGTCATTTTCATTTTTTGACTCATGATTTAGTTTCGATCATT
66 TTACTGATTAGTGGTTTAATCTCGATCATTTTCACTTTTTGACT-ATGATTTAATCCCGATCATT
3560401 TTTATTTCTTT
130 TTTATTTCTTT
* * * *
3560412 GACTCGTGATTTAATGTCGATC-ATTTTCATTTTTTGCCTTGTTATTTAATT-TCAGTCATTGTC
1 GACTCGTGATTTAATGTCGAACAATTTT-ATTTTTTGACTCGTGATTTAATTCT-AGTCATTGTC
* * * * * *
3560475 ATTTTCTGATTCGTGGTTTAATCTTGATTATTTTCACTTTTTGACT-TGTAGTTTAATCCCTATT
64 ATTTACTGATTAGTGGTTTAATCTCGATCATTTTCACTTTTTGACTATG-A-TTTAATCCCGATC
3560539 ATTTT
127 ATTTT
3560544 ACATATTCTG
Statistics
Matches: 110, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
139 2 0.02
140 7 0.06
141 101 0.92
ACGTcount: A:0.20, C:0.14, G:0.13, T:0.53
Consensus pattern (140 bp):
GACTCGTGATTTAATGTCGAACAATTTTATTTTTTGACTCGTGATTTAATTCTAGTCATTGTCAT
TTACTGATTAGTGGTTTAATCTCGATCATTTTCACTTTTTGACTATGATTTAATCCCGATCATTT
TTATTTCTTT
Found at i:3561007 original size:117 final size:117
Alignment explanation
Indices: 3560781--3561011 Score: 261
Period size: 117 Copynumber: 2.0 Consensus size: 117
3560771 AGTCCCAATC
* ** * * *
3560781 GTTTTCATTTGTTGACTCGTGCTTTAATTATGGTTGTTTTCATTTTCTACCTCGTGTTTTAATCT
1 GTTTTCATTTGTTGACTAGTGCTTTAATTATAATCGTTTTCATTTTCTACCTCGTGATTTAAACT
* * **
3560846 TGGTCATTTTCATTTTCTGACTCATAATTTAATTTAGGCAATTTTCATTATT
66 TGGTCATTTTCATTTTCTAACCCATAATTTAATCCAGGCAATTTTCATTATT
* *
3560898 GTTTTCATTTTTTGACTAGTGGTTTAATCT-TAATCGTTTTCATTTTCTTA-CTCGTGATTTAAA
1 GTTTTCATTTGTTGACTAGTGCTTTAAT-TATAATCGTTTTCATTTTC-TACCTCGTGATTTAAA
** ** *
3560961 CTTGGTTGTTTTCATTTTCTAACCCATGGTTTAATCCCGGTC-ATTTTCATT
64 CTTGGTCATTTTCATTTTCTAACCCATAATTTAATCCAGG-CAATTTTCATT
3561012 TTCTGACATG
Statistics
Matches: 94, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
117 90 0.96
118 4 0.04
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.53
Consensus pattern (117 bp):
GTTTTCATTTGTTGACTAGTGCTTTAATTATAATCGTTTTCATTTTCTACCTCGTGATTTAAACT
TGGTCATTTTCATTTTCTAACCCATAATTTAATCCAGGCAATTTTCATTATT
Found at i:3562297 original size:31 final size:31
Alignment explanation
Indices: 3562238--3562297 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
3562228 ATCATTTTTA
* *
3562238 TTTTTTGACTCACGGTTTAATCTTGGTCATT
1 TTTTTTGACTCACGATTTAATCTCGGTCATT
** *
3562269 TTTTTTGACTCGTGATTTCATCTCGGTCA
1 TTTTTTGACTCACGATTTAATCTCGGTCA
3562298 CTTTCATTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.15, C:0.18, G:0.17, T:0.50
Consensus pattern (31 bp):
TTTTTTGACTCACGATTTAATCTCGGTCATT
Found at i:3562333 original size:101 final size:101
Alignment explanation
Indices: 3562187--3562372 Score: 239
Period size: 101 Copynumber: 1.8 Consensus size: 101
3562177 CCATGGTTTA
* * ** * *
3562187 ATCTTGGTCATTGTCATTTTCTGACTTGTGATTTAATTCGGATCATTTTTATTTTTTGACTCACG
1 ATCTCGGTCATTGTCATTTTCTGACTCGTGATTTAATTCCCATCATTTTCATTTTTGGACTCACG
*
3562252 GTTTAATCTTGGTCATTTTTTTTGACTCGTGATTTC
66 ATTTAATCTTGGTCATTTTTTTTGACTCGTGATTTC
* * * *
3562288 ATCTCGGTCACTT-TCATTTTTTGAGTCGTGGTTTAATTCCCATCATTTTCATTTTTGGACTCAT
1 ATCTCGGTCA-TTGTCATTTTCTGACTCGTGATTTAATTCCCATCATTTTCATTTTTGGACTCAC
* *
3562352 GATTTAATTTTGGTTATTTTT
65 GATTTAATCTTGGTCATTTTT
3562373 ATTTCTTTGA
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
101 69 0.97
102 2 0.03
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (101 bp):
ATCTCGGTCATTGTCATTTTCTGACTCGTGATTTAATTCCCATCATTTTCATTTTTGGACTCACG
ATTTAATCTTGGTCATTTTTTTTGACTCGTGATTTC
Found at i:3562496 original size:70 final size:70
Alignment explanation
Indices: 3554947--3590748 Score: 5506
Period size: 70 Copynumber: 503.9 Consensus size: 70
3554937 TAACTTGTGG
* * * * * * *
3554947 TTTAATCTTGTTCATTTTCA-TTTTTGACTCGTGATTTAATTTTGATCATTTTTATTTTTCTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTT-TGAC
3555011 TCATGA
65 TCATGA
* * * * *** * ** *
3555017 TTTAAT-CTCAGTCATTTTCATTTTCTAACCCACAGTTTAATCCCAAT--TGTTTCATTTTCTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCAT-TTTCATTTTTTGA
3555079 CTCATGA
64 CTCATGA
* * * * * ** *
3555086 TTTAATCC-AAGTCATTTTTATTTTCTAACTCATGGTTTAATGC-CAATCATTTTTATTTTTTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGA
*
3555149 CTTATGA
64 CTCATGA
** * * * **
3555156 TTTAAT-CTCGATCGCTTTCATTTTCTAACTCATGGTTTAAT-TCCCATCATTTTTCATTTTTTG
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCA-TTTTCATTTTTTG
* *
3555219 ACTCGTAA
63 ACTCATGA
** * * * *
3555227 TTT-ATTTTTAGTCATTTTTATTTCTTTGACTCATGGTTTAATC-C--TCATTGTCTTCATTTTC
1 TTTAATCCTGA-TCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCA-T-T-TTCATTTTT
*
3555288 TGACTCATGG
61 TGACTCATGA
* * * * * ** *
3555298 TTTAAT-CTCGGT-AGTTCTTCATTTTCTGA--C-TAGTTTCATCTCGATTGTTTTCATTGTTTG
1 TTTAATCCT-GATCA-TT-TTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTG
** *
3555358 ACTTGTGG
63 ACTCATGA
* * * * * * * * * *
3555366 TTTAATCCCT-ATCATTTTAAATTTCT-ACCTCATGATTTGATC-CTGATCGTTTTCAGTTTTAG
1 TTTAAT-CCTGATCATTTTCATTTTTTGA-CTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTG
3555428 ACTCATGA
63 ACTCATGA
** * * * * * ** *
3555436 TTTAATTTTGATCA-TTT--TTTTCTAACTTGTGATTTAATTTAAGTCGTTTTCATTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3555498 -AGTGG
66 CA-TGA
* * * * * * * ** * *
3555503 TTTAATCTTGGTCATTTTCATTTTTTGACTTGTGATTTAGTTTCAGTTGTTTTTATTTCTTTGGC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGAC
*
3555568 TCATAA
65 TCATGA
** * ** * *
3555574 TTTAAAGCTGATCATTTTCATTTTTTGACTCATCATTTAAT-TCTGGTCATTTTCATTTTCTGAA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
** *
3555638 TTGTGC
65 TCATGA
* ** ** * ** * *
3555644 TTTAAT-CTTAGTCATTTTCACATTTTGACTTATGGTTTAGTCCTCATTC-TTTTACATTTTCTA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTT-CATTTTTTG
* *
3555707 ACTCGCT-C
63 ACTC-ATGA
* * * ** *
3555715 TTTAATCCCT-AT-AGTTTTCATTTTTTGA-TGCATTGTTTAATCCCTATCATTTTTATTTTTTG
1 TTTAAT-CCTGATCA-TTTTCATTTTTTGACT-CGTGGTTTAATCTCGGTCATTTTCATTTTTTG
*
3555777 ACTCAAGA
63 ACTCATGA
* * ** *
3555785 TTTAATCCTGGTCATTTTCATTTTTTGACTCGTGGTATAATC-CTAATCATTTTTCATTTATTGA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCA-TTTTCATTTTTTGA
3555849 CTCATTG-
64 CTCA-TGA
* * * * * * * *
3555856 TTTAATCTCGGTTGC--TTTCATTTTCTAACTCATGGCTTAATC-CTAGTCGTTTTCATTTTCTT
1 TTTAATC-CTGAT-CATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTT-TT
* * *
3555918 G-CTTAGGG
62 GACTCATGA
* * * * * * * * * *
3555926 TTTAGTGCCAG-TCATTTTCATCTTCTAACTCGTGCTTTAATTTTGGTCGTTTTCA-TTTTTAAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3555989 TCGTGT
65 TCATGA
* * * * * * ** *
3555995 TTTAATCCAG-TAATTTTCA--TTTAGACTCATAATTTAGTTCTAATAATTTCATTATCATTTTT
1 TTTAATCCTGATCATTTTCATTTTTTGACTC-----GT-GGT-T--TAATCTC--GGTCATTTTC
* * *
3556057 ATTTTCTGACTAATGG
55 ATTTTTTGACTCATGA
* * * * ** * * * * *
3556073 TTTAATCTTGATCGTTTTAATTTTTTGACTCCTAATTTGATTTCGATCATTTTCGTTTCTCTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGAC
**
3556138 TTGTGA
65 TCATGA
** * * *
3556144 TTTAA-CACCAAT-ATTTTCCATTTTTTGACTCGTGATTTAATCTCGGT-AGTTTTCATTTTCTA
1 TTTAATC-CTGATCATTTT-CATTTTTTGACTCGTGGTTTAATCTCGGTCA-TTTTCATTTTTTG
* *
3556206 ACCCATGG
63 ACTCATGA
* * * * * *
3556214 TTTAATCC-CAGTAATTTTCATTTTTTGAACT-ATGGTTTAATCTTGGGCATTTTAATTTTTTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTG-ACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
**
3556277 CTTGTGA
64 CTCATGA
* * ** * * * ** *
3556284 TTTAATCTTGGTTGTTTCCATTTTTTGACTTGTGGTATAATC-CTGGTTGTTTTTATTTTCTT-A
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTT-TTGA
**
3556347 CTTGTGA
64 CTCATGA
* ** ** *
3556354 TTTAAT-CTCAGTTGTTTTCATTTTTTGACTCGTGGTTTAAT-TCCCATCATTTTCATTTTATGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
* *
3556417 CTCCTAA
64 CTCATGA
* * * * * ** *
3556424 TTTAATTCTGGTCATTTTTATTCCTTTGACTCGTGGTTTAATCTCCGTTGTTTTCATTTTTTAAC
1 TTTAATCCTGATCATTTTCATT-TTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3556489 TCATGG
65 TCATGA
* * * * * ** * * *
3556495 TTTAATCGTGATCTTTTTTCATTTTTTGATTAGTGGTTTCATCTCAATCGTTTTTATTTTCTGAC
1 TTTAATCCTGATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3556560 TCGTGG
65 TCATGA
* * * * * * * *
3556566 TTTAATCTCT-ATCATTTTAATTTTTTGACTTGT-GTTTAATCTTGATCATTTTTAATTTTAGTC
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3556629 TTATGA
65 TCATGA
* * * * * ** * *
3556635 TTTAAT-TTCGATCATTTTTATTTTCTAACTCGTGATTTAAATC-CAATCGTTTTCAATTTTTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTT-AATCTCGGTCATTTTCATTTTTTGA
* * *
3556698 CTAAGGG
64 CTCATGA
* * * * ** * *
3556705 TTTAATCCTGGTCATTTTCATTTTTTGACTCATGATTTAGT-TCTGAACGTTTTTATTTCTTTGA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTT-TTTGA
** *
3556769 CTTGTAA
64 CTCATGA
* * ** ** * *
3556776 TTTAAT-ATCGATCATTTTCATTCTTTGACTCGTCATTTAAT-TCTGGTCATTTTTGTTTTCTAA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
*
3556839 CTCATGG
64 CTCATGA
* * * ** ** *
3556846 TTTAATCTTGATCATTTTCACTTTTTGACTTGTGGTTTAATC-CTTATTGTTTTACATTTTTTAA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTT-CATTTTTTGA
*
3556910 CTCATGG
64 CTCATGA
* * ** *
3556917 TTTAATCCCT-ATCATTTTCATTTTTTGA-TGCATTGTTTAATC-CATATCATTTTTATTTTTTG
1 TTTAAT-CCTGATCATTTTCATTTTTTGACT-CGTGGTTTAATCTC-GGTCATTTTCATTTTTTG
3556979 ACTCATGA
63 ACTCATGA
* ** * * * * *
3556987 TTTAATCCCGATTGTTTTCATTTTTTGACTCGTCGTATAATCCCAGTCTTTTTTCATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTC-ATTTTCATTTTTTGAC
* *
3557052 TCGTCA
65 TCATGA
** * * * ** *
3557058 TTTAATCCTGATCGCTTTCATGTTTAGACTCGTGGCTTAATC-CTGGTGGTTTTCATTTTCTCG-
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTT-TTGA
* * * *
3557121 TTTAGGG
64 CTCATGA
* * * * * * *
3557128 TTTAGTCCT-AGTCATTTTCATTTTCTAACCCGTGCTTTAAT-TCAGGCCATTTTCATTTTTTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
* *
3557191 CTTATGT
64 CTCATGA
* * * * * ** **
3557198 TTTAAGCC-CAGTCATTTTCATTTTCTAACTCTTAATTTAATTTCAATAATTTTCATTATCATTT
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAA--TC--------TC--GGTCATTT
* * *
3557262 TCATTTTCTAACTCATGG
53 TCATTTTTTGACTCATGA
* * * ** * * *
3557280 TTTAATCTCTG-TCATTTTCATTTTTTGACTCATGATTTAATTTCAATCATTTTTATTTCTCTAA
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
**
3557344 CTTGTGA
64 CTCATGA
* * * * * * * * * * *
3557351 TTTAA-CATCGATCGTTTCCATTTTCTAACTCATGATTTAATCTTGGTCATTTTCGTTTTCTAAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3557415 CCATGA
65 TCATGA
* * * * ** * *
3557421 TTTAATCCT-AGTCGTTTTCATTTTCTGAC-CAATGGTTTAATCCCAATCGTTTTCATTTTCTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTC-GTGGTTTAATCTCGGTCATTTTCATTTTTTGA
**
3557484 CTTGTGA
64 CTCATGA
* * * * * * * * * * *
3557491 TTTAAT-CTGGGTCATTTTTATTTTCTAACCCATGGTTTAATCCCAGTCATTTTTATTTTCTAAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3557555 TCATGA
65 TCATGA
* * * * ** * *
3557561 TTTAATCTTGA-CAGCTTTAATTTTTTGACTCATGGTTTAAT-TCCAATCATTTTAATTTTCTGA
1 TTTAATCCTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
* **
3557624 ATTGTGA
64 CTCATGA
** * * ** * *
3557631 TTTAATTTTGATCATTTTTATTTCTTTGACTCATGGTTTAATCCTC-GTTGTCTTCATTTTCTGA
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGA
* *
3557695 CTCTTGG
64 CTCATGA
* ** * * * * * * *
3557702 TTTAATACTGATTGTTTTTCATTTTCT-A--GGTGGTTTCATCTTGATCATTTTTATTTTCTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3557764 TCATGC
65 TCATGA
* ** ** ** * *
3557770 TTTAATCCCTG-TCATTTTAATTTTTTGACTCAAGGTTTAA-CTTTAGTTGTTTTCAGTTTTAGA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TCGGTCATTTTCATTTTTTGA
*
3557833 CTCGTGA
64 CTCATGA
* * * * *
3557840 TTTAAAT--TTAGTCACTTTT-ATTTTTTGATTCGTGATTTAAT-TCCAGTCGTTTTCATTTTTT
1 TTT-AATCCTGA-TCA-TTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTT
*
3557901 GACT-AGTGG
62 GACTCA-TGA
* * * * * *
3557910 TTTAATCCTAATCATTTTCATTTTTTGACTCGTGATTTAGTTTTGGTCATTTTTATTTCTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGAC
3557975 TCATGA
65 TCATGA
* ** * * *
3557981 TTTAATGCC-AATCATTTTCATTTTTTGACTCGTCATTTAAT-TCCAGTCATTTTCCTTTTTTAA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
** *
3558044 CTTGTGG
64 CTCATGA
* * * * * ** * *
3558051 TTTAATCTTGGTCATTTTCACTTTTTGACTTGTGGTTTAATCCCTATTATTTTACATTTTCTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTT-CATTTTTTGAC
**
3558116 TCATCC
65 TCATGA
* * * * * * * *
3558122 TTTAATCCCT-ATCGTTTTCATTTTCT-AATGCGTTGTTTAATCCCTGTTATTTTTATTTTTTGA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACT-CGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
**
3558185 CTTGTGA
64 CTCATGA
* * * * * *
3558192 TTTAAACAC-GATCATTTTCATTTTTTGACTTGTAGTATAATC-CTGGTCATTTTTCATTTTCTA
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCA-TTTTCATTTTTTG
*
3558255 ACTCGTCG-
63 ACTCAT-GA
* * * * **
3558263 TTTAATTCTGAT-AGTTTTCATTTCTTT--CTCATGGCTTAATCTTGGTGGTTTTCATTTTCTTG
1 TTTAATCCTGATCA-TTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTT-TTG
* * *
3558325 -CTTAAGG
63 ACTCATGA
* * * * * * * *
3558332 TTTAGTCCT-AGTCATTTTCATTTTCTAACTTGTGCTTTAATTTCGATCATTTTCA-TTTTTAAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3558395 TCGTGT
65 TCATGA
* ** * *
3558401 TTTAAT-CTCGATCATTTTCATTTTTTGACTCTTAATTTAAT-TCTGATAATTTTCATTATCGTT
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTC---A-----
* *
3558464 TTCATTTTTAACTCATGG
56 -T--TTTTTGACTCATGA
* * * *
3558482 TTTAAT-CTCGATCATTTTCATTTTTTGACTCGTGATTTAATTTCGATCATTTTTATTTCTTTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
**
3558546 CTTGTGA
64 CTCATGA
* * * ** *
3558553 TTTAA-CACTGAT--TTTTCCATTTTCTGACTTGTGATTTAATCTTAGTCATTTTCATTTTTTAA
1 TTTAATC-CTGATCATTTT-CATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3558615 CCCATGG
64 CTCATGA
* * * ** * * * *
3558622 TTTAATCC-CAGTCATTTTCATTTTCTGACCCACGTTTTAATCTCGATCGTTTTCATTTTCTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3558686 TCATGA
65 TCATGA
* * * *** *
3558692 TTTAATCCCTG-TC-GTTTCTATTTTTTGACTCATGGTTTTATCTAAATCATTTTTATTTTTTGA
1 TTTAAT-CCTGATCATTTTC-ATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
3558755 CTCATGA
64 CTCATGA
* * * * ** * *
3558762 TTTAAT-TTCAATCATTTTCATTTTCTGACTTGTGGTTTAAT-TCCCATCATTTTCATTTTCTAA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
3558825 CTCATGA
64 CTCATGA
* * * * * * * * *
3558832 TTTGATTCTTG-TCATTTTTAGTTCTTTGACTCCTGGTTTAATCCCCGTTATCTTT--TTTTTTA
1 TTT-AATCCTGATCATTTTCA-TTTTTTGACTCGTGGTTTAATCTCGGTCAT-TTTCATTTTTTG
*
3558894 ACTCATGG
63 ACTCATGA
* * * * * ** *
3558902 TTTAATTGC-GATCGTTTTCATTTTCTGACTGGTGGTTTCATCTAAGCCATTTTCATTTTTTGAC
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3558966 TCATGG
65 TCATGA
* * * * ** * * *
3558972 TTTAATCCCTG-TCGTTTTAATTTTTTGACTCAT-GTTTAATCCCATTCATTTTTAGTTTTAGAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3559035 TTGTGA
65 TCATGA
** * * * * *
3559041 TTTAATTTTGGTCATTTTTATTTTTTGACTTGTGATTTAAT-TCTGATCATTTTCATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
*
3559105 T-AGTGG
65 TCA-TGA
* * * * * * *
3559111 TTTAATCCCTG-CCATTTTTATTTTCTAACTCGTGGTTTAAATCT-GATCATTTTAATTTTTTAA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTT-AATCTCGGTCATTTTCATTTTTTGA
** *
3559174 CAAAGGA
64 CTCATGA
* * * * * *
3559181 TTTAAT-CTCGGTCATTTTCA-ATTTTAACTTGTGATTTAATAC-CGATCATTTTCATTTTTTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGA
**
3559243 CTTGTCG-
64 CTCAT-GA
** * ** * * * * * *
3559250 TTTAATTTTGGTCATTTTTGTTTTGTAACTAGTGATTTAATCTTGGTCATTTTCA--CTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
3559313 --TGTA
66 CATG-A
* ** * * * * * *
3559317 GTTTAATCC-CAGTTGTTTTACATTTTTCGACTCATGGTTTAATCCCTGTCATTTTCATTTTCTA
1 -TTTAATCCTGA-TCATTTT-CATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTG
**
3559381 ACGTGTTG-
63 AC-TCATGA
* ** * * *
3559389 TTTAATCCTTG-TCATTTTTATTTTTTGACTTATGATTTAATCTC-GACTGTTTTCATTTTTTGA
1 TTTAATCC-TGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTC-ATTTTCATTTTTTGA
*
3559452 CTCGTTG-
64 CTC-ATGA
* * ** * * * ** * *
3559459 TATAATCAC-GATCATTTTTCATTTTTTGGCTTATTGTTCAATCCCAATCACTTTCATTTTCT-A
1 TTTAATC-CTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
** *
3559522 TCTTGTGG
64 -CTCATGA
* ** * * ** * *
3559530 CTTAATCCT-AGTGGTTTTCATTTTCTT-ACTTAG-GGTTTAGTC-CCATCCATTTTCGTTTTCT
1 TTTAATCCTGA-TCATTTTCATTTT-TTGAC-TCGTGGTTTAATCTCGGT-CATTTTCATTTTTT
* *
3559591 AACTCATGC
62 GACTCATGA
* * ** * * *
3559600 TTTAAT-TTCGATCATTTTCATTTTTT-ACCTCATCTTTTAATCTCAGTCATTTTCATTTTCTAA
1 TTTAATCCT-GATCATTTTCATTTTTTGA-CTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3559663 CTGATAA
64 CTCATGA
** * * * *
3559670 TTTAATTTTGATAATTTTCATTATCATTTTTGCTTTTTGACTCATGGTTTAATCTCGATCGTTTT
1 TTTAATCCTG---A---TCATTTTCA----T--TTTTTGACTCGTGGTTTAATCTCGGTCATTTT
* *
3559735 TATTTTTTAACTCATGA
54 CATTTTTTGACTCATGA
** * * * * * * * ** ** * *
3559752 TTTAATTTTAATCATTTTTATTTCTCTAACAT-ATGATTTAA-CACCAATTGTTTCCATTTTCTG
1 TTTAATCCTGATCATTTTCATTT-TTTGAC-TCGTGGTTTAATC-TCGGTCATTTTCATTTTTTG
*
3559815 ACTCTTGA
63 ACTCATGA
* * * * * ** * * * *
3559823 TTTAATCTTGGTCATTTTCATTTTCTAACCCACGGTTTAATCCCAGTCATTTTCATTTTCTGACC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
3559888 CAT-A
66 CATGA
* * * * * ***
3559892 GTATAAT-TTCGATCGTTTTCATTTTTTGACTCATGATTTAATCAATGTCA-TTTCTATTTTTTG
1 -TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTC-ATTTTTTG
** *
3559955 ACTTGTGG
63 ACTCATGA
* * * * * * ** * *
3559963 TTTAAT-TTCATTCATTTTTATTTTATGACTCGTGATTTAATCTCGATCGCTTTCATTTTCTAAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3560027 TCATGG
65 TCATGA
* * * * * * *
3560033 TTTAATTCC-CATCATTTTAATTTTTTGACTCGTGATTTAATTTTGGTCATTTTTC-TTTCTCTA
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCA-TTTTCATTT-TTTG
** *
3560096 ACTTGTGG
63 ACTCATGA
** * * * ** * *
3560104 TTTAATCCTCG-TTGTTTTCATTTTCTGACTCATGGTTTAATCTCGATTGTTTTTAATTTTATGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCG-GTCATTTTCATTTTTTGA
*
3560168 CT-AGTGG
64 CTCA-TGA
* * * * * * ** * *
3560175 TTTCAT-CTCATTCATTTTTATTTTTTGACTTGTGCTTTAATCCCTATCGTTTTAATTTTTTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3560239 TCGTGA
65 TCATGA
* ** * * * * * **
3560245 TTTAAT-CTAAGTTGTTTTCAGTTTTAGACTCGTGATTTAATTTTGAACAATTTT-ATTTTTTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTC-ATTTTCATTTTTTGA
*
3560308 CTCGTGA
64 CTCATGA
* ** * *
3560315 TTTAATTCT-AGTCATTTTCATTTACTGATTAGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3560379 TCATGA
65 TCATGA
* * * * * * *
3560385 TTTAGT-TTCGATCATTTTTATTTCTTTGACTCGTGATTTAATGTCGATCATTTTCATTTTTTGC
1 TTTAATCCT-GATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
** *
3560449 CTTGTTA
64 CTCATGA
* * * * * * * * *
3560456 TTTAAT-TTCAGTCATTGTCATTTTCTGATTCGTGGTTTAATCTTGATTATTTTCACTTTTTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3560520 T--TGTA
65 TCATG-A
* * * * * * * *
3560525 GTTTAATCCCT-ATTATTTTACATATTCTGACTCGTGCTTTTATC-CTTGTCATTTTTATTTTCT
1 -TTTAAT-CCTGATCATTTT-CATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTT
* *
3560588 AACACATTG-
62 GACTCA-TGA
* * * * *
3560597 TTTAAT-C----C-TTGTCATTTTTTAACTCGTGATTTAATCTCGATCATTTTCCTTTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTT-CATTTTTTGAC
*
3560656 TCATGG
65 TCATGA
* * * * ** ** * *
3560662 TATAATTCCAG-TCATTTTTCATTTTTTGACTCATTGTTTAATC-CTTATCGCTTTCCTTTTCTG
1 TTTAA-TCCTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTG
* * *
3560725 ATTCGTGG
63 ACTCATGA
** * * * * ** * *
3560733 TTTAATCCTGATGGTTTTCATTTTCTCG-TTCAG-GGTTTAGTCCCAATCGTTTTCATTTGTTGA
1 TTTAATCCTGATCATTTTCATTTT-TTGACTC-GTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3560796 CTCGTGC
64 CTCATGA
** * ** * * * *
3560803 TTTAATTATGGTTGTTTTCATTTTCT-ACCTCGTGTTTTAATCTTGGTCATTTTCATTTTCTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGA-CTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3560867 TCATAA
65 TCATGA
* * *** *
3560873 TTTAAT-TTAGGCAATTTTCATTATTGTTTTCATTTTTTGACTAGTGGTTTAATCTTAATCGTTT
1 TTTAATCCT--G--A---TC---A---TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTT
*
3560937 TCATTTTCTT-ACTCGTGA
53 TCATTTT-TTGACTCATGA
* * * ** * * * * * *
3560955 TTTAAACTTGGTTGTTTTCATTTTCTAACCCATGGTTTAATCCCGGTCATTTTCATTTTCTGACA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC-
*
3561020 T-GTGA
65 TCATGA
* * * * * * * *
3561025 TTTAATTCGGGTCATTTTTATTTTTTGATTTGTGGTTTAATC-CTGATCATTTTTATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
* *
3561089 TCGTGC
65 TCATGA
* * ** * * ** *
3561095 TTTAATTTCGGA-CGCTTTCA-TTTCTGACTCATGGTTTAAT-TCCCATCATTTTCATTTTCT-A
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
*
3561156 TCTCATTA
64 -CTCATGA
* * * * * ** ** * *
3561164 TTTAATTCTGGTCATTTTTATTTCTCTGACTCGTGGTTTAATCCCCATTGTCTTCATTTTCTGAC
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3561229 TCGTGG
65 TCATGA
* * * * * * * * *
3561235 TTTAATCTTGATCATTTTTTAATTTCTGACTGGTGGTTTCATCTCGATCATTTTCATTCTCTGAC
1 TTTAATCCTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3561300 TCGTGG
65 TCATGA
* ** * * * * * * * * *
3561306 TTTAATTCTTG-TTGTTTTAATTTTTTGGCTCATGGTTTAATCCCAGTCGTTTTTAGTTTTAGAC
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3561370 TTGTGA
65 TCATGA
** * * * * * * * ** * *
3561376 TTTAATTTTTATCATTTTTATTTTCTAACTAGTGATTTAATATCAATCGTTTTCATTTTTAGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3561441 -AGTGG
66 CA-TGA
* * * * ** * *
3561446 TTTAATCTTGATCATTTTCATTTTCTT-ACTCATGATTTAGT-TCCAATCATTTTTATCTCTTTG
1 TTTAATCCTGATCATTTTCATTTT-TTGACTCGTGGTTTAATCT-CGGTCATTTTCAT-TTTTTG
**
3561509 ACTTGTGA
63 ACTCATGA
** * * * * * * * **
3561517 TTTAATGTTGATTATTTTTATTTTTT-ACTTGTCGTTTAATTTCGATAATTTTTGTTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
* *
3561581 CGTGG
66 CATGA
* * * ** * **
3561586 TTTAATCTTGGTTATTTTCACTTTTTT-ACTTATGGTTTAATCCTC-ATTGTTTTACATTTTTTG
1 TTTAATCCTGATCATTTTCA-TTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTT-CATTTTTTG
*
3561649 ACTCGT-A
63 ACTCATGA
* * * * * * * * * *
3561656 CTTTAATCTTTATCAGTTTCATTTTCTAACACATTGTTTAATC-CTTGTCACTTTT-ATTTTTTA
1 -TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCA-TTTTCATTTTTTG
3561719 ACTCATGA
63 ACTCATGA
* ** * * * *
3561727 TTTAAT-CTCAGTTGTTTTCATTTTTTGACTCATGGTATAATC-CTGATCATTTTTTATTTTTTG
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCA-TTTTCATTTTTTG
3561790 ACTCATCG-
63 ACTCAT-GA
** * * * ** *
3561798 TTTAATTGTGATTGC-TTTTCATTTTCTGACTCATGGTTTTAATC-CTAGTGGTTTTCAGTTTCT
1 TTTAATCCTGA-T-CATTTTCATTTTTTGACTCGTGG-TTTAATCTC-GGTCATTTTCA-TTTTT
* * *
3561861 CG-CAT-AGGG
61 TGAC-TCATGA
* ** * * * * * * * *
3561870 TTTAGTCCCAATCGTTTTCATTTTCTGATTTGTGCTTTAAT-TCCAGTCATTTTCATGTTTTAAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGAC
*
3561934 TCAT-C
65 TCATGA
* * * ** *
3561939 TTTAATCC-CAGTCATTTTCATTTTTTGTCTTGTAATTTAAT-TATGGTTATTTTAATTATCATT
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGG------------TCATT
* *
3562002 TTTATTTTTTGACTCATGG
52 TTCATTTTTTGACTCATGA
* * * * * * * ** * * * **
3562021 TTTAAT-CTCGATCATTTCCATTTTCTGATTGGTGATTTTTATGTCTTTGACTTGTGATTTAAT-
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTG-GTTTAATCTCGGTCA-TTTTCATTTTTTG
** *
3562084 ACAGATAGT
63 ACTCAT-GA
* ** * ** * * * * * * * **
3562093 TTTCATTTTATGACTCATAATTTAATCTTAGTCATTTTCAT-TTTCTAA-CCCATGGTTTAATCC
1 TTT-A-ATCCTGA-TCAT--TTTCAT-TTTTTGA--CTCGTGGTT-TAATCTC--GG-TCATTTT
* * *
3562156 CAGTGGTTTTCATTTTCTGACCCATGG
54 CA-T-TTTTT--------GACTCATGA
* * * * * * *
3562183 TTTAATCTTGGTCATTGTCATTTTCTGACTTGTGATTTAAT-TCGGATCATTTTTATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGG-TCATTTTCATTTTTTGAC
* *
3562247 TCACGG
65 TCATGA
* * * * * *
3562253 TTTAATCTTGGTCA--TT--TTTTTTGACTCGTGATTTCATCTCGGTCACTTTCATTTTTTGAGT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
* *
3562314 CGTGG
66 CATGA
* * * * * * * *
3562319 TTTAATTCC-CATCATTTTCATTTTTGGACTCATGATTTAATTTTGGTTATTTTTATTTCTTTGA
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
3562383 CTCATGA
64 CTCATGA
* ** * * * *
3562390 TTTAATCCCCG-TTGTCTTT-ATTTTCTGACTCATGGTTTAATC-CTGATCATTTTTATTTTTTG
1 TTTAAT-CCTGATCAT-TTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTG
** *
3562452 ACTGGTGG
63 ACTCATGA
* * * * ** * * * *
3562460 TTTCAT-CTCGGTCGTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCGTTTTAATTTTCTAAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3562524 T--TGTA
65 TCATG-A
* * * * * * * *
3562529 GTTTAAT-TTCAGTCATTTTTCAGTTTTAGACTCATGATTTAATTTTC-GTCATTTTTATTTTTT
1 -TTTAATCCTGA-TCA-TTTTCATTTTTTGACTCGTGGTTTAA-TCTCGGTCATTTTCATTTTTT
**
3562592 GACTTGTGA
62 GACTCATGA
* * *
3562601 TTTAATTCC-GATCGTTTTCATTTTTTGACTAGTGATTTAATC-CTGGTCATTTTCATTTTTTGA
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
*
3562664 CTCGTGA
64 CTCATGA
* * * * * * *
3562671 TTTAGT-TTCGATCATTTTTATTTCTTTAACTCATGATTTTAATGC-CAGTCATTTTCATTTTTT
1 TTTAATCCT-GATCATTTTCATTT-TTTGACTCGTG-GTTTAAT-CTCGGTCATTTTCATTTTTT
*
3562734 GACTCGTTG-
62 GACTC-ATGA
** * * ** *
3562743 TTTAATTTTGGTCATTTTCATTTTTTGACTTGTGGTTTAATCTTAGTCATTTTCAGTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
** *
3562808 TGTGG
66 CATGA
* ** ** * * ** * *
3562813 TTTTATCCCCATTGTTTTACATTTTTTGACTCGTGCTTTAATCCCTATCGTTTTCATTTTCT-A-
1 TTTAATCCTGATCATTTT-CATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3562876 ACATGT
65 TCATGA
* * * * *
3562882 TTTAATCTCTG-TCATTTTTATTTTGTGACTCATGATTTAATCTTGGTCATTTTCATTTTTTGAC
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3562946 TCGTGG
65 TCATGA
* * * ** ** *
3562952 TATAATCCCGATCATTTTTCATTTTTTGACTCATCATTTAATC-CTAATCATTTTCATTTTCTGA
1 TTTAATCCTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
* *
3563016 CTCGTTA
64 CTCATGA
* * * * * * *
3563023 TTTAATCCT-A-CTAGTTTTCATTTTCTCACACAG-GGTTTAGTC-CTAGTCGTTTTCATTTTCT
1 TTTAATCCTGATC-A-TTTTCATTTTTTGACTC-GTGGTTTAATCTC-GGTCATTTTCATTTTTT
* * *
3563084 GAATCGTGC
62 GACTCATGA
* * * ** * * *
3563093 TTTAATTCT-AGTCATTTTTA-TTTTTAACTAATGTTTTAATAC-CAGTCATTTTCATTTTCTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGA
*
3563155 CTCATAA
64 CTCATGA
** * * * * *
3563162 TTTAATTTTGGTAATTTTCATTATCATTATCATTTTCTGACTCG-TGGTTTA-ATC--TCGATCC
1 TTTAATCCT-G--A---TC---AT--TT-TCATTTTTTGACTCGTGGTTTAATCTCGGTC-AT--
* *
3563223 TTTTCATTTTTTGACTCATAA
51 TTTC-ATTTTTTGACTCATGA
* * * ** ** *
3563244 TTTAAT-TTCGATCATTTTTATTTCTCTGACTTAT-GTTTCAATAC-CAATCATTTTCATTTTCT
1 TTTAATCCT-GATCATTTTCATTT-TTTGACTCGTGGTTT-AAT-CTCGGTCATTTTCATTTTTT
*
3563306 GACACATGA
62 GACTCATGA
* * * * * * * *
3563315 TTTAAT-CTCAGTCATTTTCATTTTCTAACCCATGGTTTAATCCCGATCATTTTTATTTTTTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3563379 -CTATGG
65 TC-ATGA
** * * * * * * *
3563385 TTTAATCCT-AGTTGTTTTCATTTTCTGACTCATGGTTTAATCCCGATCGTTTTTATTTTCTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3563449 TAATGA
65 TCATGA
* *** * * * ** * *
3563455 ATTAAT-CTCGATTGCTTTCATTTTCTGACTCATTGTTTAAT-TCCCATCATTTTCATTTTCTAA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
3563518 CTCATGA
64 CTCATGA
* * * * * * * *
3563525 TTTAATTCTGGTAATTTT--TTTCATTGACTCATGGTTTAATCCCTGT-GTTCTTCATTTTTTGA
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATT-TTCATTTTTTGA
*
3563587 CTCATGG
64 CTCATGA
* * * * * ** * *
3563594 TTTAATCCCTG-TCATTTT-AATTTTTGACTCATTGTTTAATCCCAGTTGTTTTCAGTTTTAGAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3563657 TCATGA
65 TCATGA
** * * * * * * *
3563663 TTTAATTTTGGTCATTTTTA-TTTTCGAACTCGTGATTTAATTTTGGTAATTTTCATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTG-ACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3563727 TAATGG
65 TCATGA
* * * * * * ** *
3563733 TTTAATCCT-AGT--TGTTTCTATTTTCTGACTTGAGATTTAGTTTCAATCGTTTTTC-TTTCTT
1 TTTAATCCTGA-TCAT-TTTC-ATTTTTTGACTCGTGGTTTAATCTCGGTC-ATTTTCATTT-TT
* *
3563794 CGACTCGTGA
61 TGACTCATGA
* * * * * * *
3563804 CTTAATGCC-GGTCATTTTCATTTTTTGACTAGTCGTTTAATTTTGATCATTTTCATTTTTTGAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3563868 TCATGG
65 TCATGA
** * ** * * *
3563874 TTTAATTTTGATCATTTTCACTTTTTGACTTATGGTTTTAATCCTC-ATTACTTTACATTTTTTG
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGG-TTTAAT-CTCGGTCA-TTTTCATTTTTTG
* *
3563938 GCTCATGT
63 ACTCATGA
** * * * * * *
3563946 TTTAATCCCT-ATTGTTTTCATTTTCTGA-TGCATTGTTTAAT-TCCTGTCATTTTTACTTTTTG
1 TTTAAT-CCTGATCATTTTCATTTTTTGACT-CGTGGTTTAATCT-CGGTCATTTTCATTTTTTG
*
3564008 AATCATGA
63 ACTCATGA
* * * * * **
3564016 TTTAATCCTGGTCATTTTCATTTTTTGACAT-ATGGTATAATCCCTGTTGTTTTTCATTTTTTGA
1 TTTAATCCTGATCATTTTCATTTTTTGAC-TCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
* * *
3564080 TTTATCA
64 CTCATGA
*** * * *** ** * *
3564087 TTTAATCCTGATTGCTTTCATCCTTTT-ACTCATGGTTTAATCTTTATGGTTTTCATTTTCTCAC
1 TTTAATCCTGATCATTTTCAT-TTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3564151 TCAGGG
65 TCATGA
* * * * * * * * *
3564157 TTTAGTCC-CAGTCATTTTCATTTTTTGACTTGTGCTTTAATTTTGAAT-GTTTTCATTTTTTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCG-GTCATTTTCATTTTTTGA
* *
3564220 CTCGTGT
64 CTCATGA
* * ** * *
3564227 TTTAAT-CTCGGTCATTTTCATTTTTTGACTTGTAATTTAATTTCAGTAATTTTCATTGTCGTTT
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAA--TC--------TC--GGTCATTT
* ** *
3564291 TCATTTTCTGACTTGTGG
53 TCATTTTTTGACTCATGA
* * * * * *
3564309 TTTAAT-TTCGATCGTTTTCATTTTCTGACTCATGGTTTAATCTTGGTCATTTTCATTTCTTGAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3564373 TCATAGCA
65 TCAT-G-A
* * * * * ** *
3564381 --TAAT-CTCGGTCGCTTTTC-TTTTTCTGACTCATTGTTTAATCTCGATCGCTTTCACTTTTTG
1 TTTAATCCT-GATC-ATTTTCATTTTT-TGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTG
*
3564442 ACTCATGG
63 ACTCATGA
** * * * * *
3564450 TTTAATCCT-AGTGGTTTTCATTTTCTCG-CTCAG-GGTTTAGTC-CTAGTCATTTTTATTTTCT
1 TTTAATCCTGA-TCATTTTCATTTT-TTGACTC-GTGGTTTAATCTC-GGTCATTTTCATTTTTT
* *
3564511 G-CTTATAA
62 GACTCATGA
* * * * * * * * *
3564519 TTTAATTCTTATAATTTTCATTATCATTT---TCAT-TTTCTAA-CTC-ATGA-TTT-A-CTTTC
1 TTTAATCCTGATCATTTTCATT-T--TTTGACTCGTGGTT-TAATCTCGGTCATTTTCATTTTTT
3564575 GA-TCAT--
62 GACTCATGA
* * * ** * * * **** *
3564581 TTTAATTTCTTTGA-C-TTGTGATTTAAT-AC-CAATTGTTTTCATTTTCTAACACATAGTTTAA
1 TTTAA--TC-CTGATCATTTTCATTTTTTGACTC--GTGGTTT-A--ATCTCGGTCAT--TTTCA
** * *
3564642 TCCTTTGACCCATGG
56 TTTTTTGACTCATGA
* * * * * * * * *
3564657 TATAAT-CTCGATCATTTTCATTTTCTGACTCATGATTTAATCTTGGTCATTTTTATTTTCTAAG
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3564721 TCATGG
65 TCATGA
* * ** * * * * * ** *
3564727 TCTAATCC-CAGTTGTTTTTATTTTCTGAATCGTGATTTAATCTTGGTCGCTTTCATTTTCTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3564791 TCGTGG
65 TCATGA
* * ** * * * * *
3564797 TTTAATTCC-CATCATTTTCATTTTCTGACTTATGATTTAATTTTGGTCATTTTTATTTCTCTGA
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
* *
3564861 CTCGTGG
64 CTCATGA
** * * *
3564868 TTTAATCCTCG-TTGTCTTCATTTTTTGACTCGTGGTTTAATGCT-GATCATTTTTCATTTTTTA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCA-TTTTCATTTTTTG
3564931 ACTCATG-
63 ACTCATGA
* * *** * * *
3564938 -GT--TCCTTG-TCATTTTAATTTTTTGACTCGTGGTTTAATCTTAATCGTTTTCAGTTTTAGAC
1 TTTAATCC-TGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3564999 TCGTGA
65 TCATGA
** * * * * * * * *
3565005 TTTAATTTTGGTCATTTTTATTTTCTAACTCATGATTTAAT-TCTGATCATTTTTATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
*
3565069 T-AGTGG
65 TCA-TGA
** * * * * * * ** *
3565075 TTTAATCCCAATAATTTTCATTTTTTGATTTGTGATTTAGTTTCGGTTGTTTTTATTTCTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGAC
*
3565140 TCGTGA
65 TCATGA
* * * * * * * *
3565146 TTTAATGCTGGTCATTTTCATTTTTTGACTCATCGTTTAATTTTTGGTCATTTTTAGTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTCGGTCATTTTCATTTTTTGAC
3565211 T--TGA
65 TCATGA
* * * * **
3565215 GGTTTAAT-CTCAGTCATTTTCACTTTTTGGACT-TTGGGTTTAATCCCCATTC-TTTTACA-TT
1 --TTTAATCCTGA-TCATTTTCA-TTTTTTGACTCGT-GGTTTAAT-CTCGGTCATTTT-CATTT
* *
3565276 TTTGACTCGTGC
59 TTTGACTCATGA
* * * * ** * *
3565288 TTTAATCCCTG-TCATTTTCATTTTCT-AATGCGTTGTTTAATCACTATCATTTTTATTTATTTA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACT-CGTGGTTTAATCTCGGTCATTTTCATTT-TTTG
*
3565351 ACTAATGA
63 ACTCATGA
* * * * * *
3565359 ATTAATCCTGGTCGTTTTCTTTTTTTGACTCGTGGTATAATCCTGACCG-C-TTTTCATTTTTTG
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CT--CGGTCATTTTCATTTTTTG
3565422 ACTCATCG-
63 ACTCAT-GA
*** * * * ** *
3565430 TTTAAT-CTCGATCGCATTCATTTTCTGACTCATGGTTTAATC-CTGATGGTTTTCATTTTCT-A
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
* *
3565492 GCTCAGGG
64 -CTCATGA
* * * * * ** * * *
3565500 TTTAGTCCCGGTCGTTTTCATTTTTTGACTTGTAATTTAATCTCGATCATTTTCATTTTCTAACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
* *
3565565 CGTAA
66 CATGA
* * * * * *
3565570 TTTAATTCTAAAAATTTTCATTATATTTTCATTTTCTAACTTGTGGTTTAATCTCGATCATTTTC
1 TTTAATCCT---GA---TC-----ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTC
* *
3565635 ATTTTCTGACTCGTGA
55 ATTTTTTGACTCATGA
** * * * * * ** *
3565651 TTTAATTTTGATAATTTTTATTTCTTTGACTTGTGATTTAATACT-GATTGTTTTCATCTTTTGA
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGA
**
3565715 CTTGTGA
64 CTCATGA
* * * * ** * * ** * *
3565722 TTTAATCTTGATCATTTTCATTTTCTAACCCACGATTTAATCTTGGTTGTTTTCATTTTCTGACC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3565787 CATGG
66 CATGA
* * * * * * * * * ** * *
3565792 TTTAATCTTGGTCGTTTTTATTTTCTAACTCATGATTTAATTTAAGTCATTTTTA-TTTTTGGCT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3565856 CGTGA
66 CATGA
* * * *** * * * * *
3565861 CTTAATCTTGGTTGCTTTCATTTTCTAACTCGTGGTTTAATTTC-ATCATTTTCATTTTCTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3565925 CGTGA
66 CATGA
* *** * * *
3565930 TTTAATCCT-AGTCATTTT-ATTTCTCTGACTCACAGTTTAATC-C--CCATTGTCTTTATTATC
1 TTTAATCCTGA-TCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATT-TT-T-
* * *
3565990 TAACTCGTGG
61 TGACTCATGA
* ** * * * * * *
3566000 TTTAATCTTGATTGTTTTTC-TTTTTCTGACTGGTAGTTTTATCTCGATTATTTTCATTTTCTGA
1 TTTAATCCTGA-TCATTTTCATTTTT-TGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
*
3566064 CTCATGG
64 CTCATGA
* * ** ** * * *
3566071 TATAATCCTG-TCATTTTAATTTTTTGACTCACGGTTTAATCCTC-GTCGGTTTCAGTTTTAGAT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGAC
*
3566134 TCGTGA
65 TCATGA
** * * * * ** * *
3566140 TTTAATTTTGGTCATTTTTATTTTTTGACTTGTGATTTAAT-TGCCATCATTTTCATTTTCTGTC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGAC
3566204 T-A-GTA
65 TCATG-A
* * * * *
3566209 GTTTAAT-GTCGATCATTTTCA--TTTTGACTCGTGATTTAGTTTCGGTCATTTTTATTTCTTTG
1 -TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTG
3566271 ACTCATGA
63 ACTCATGA
* * * * ** *
3566279 TTTAAT-GTCAATCATTTTCATTTTTTGACTCATCGTTTAA--T-GGTCATTTTTGTTTTATGAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3566340 TCATGG
65 TCATGA
* * * * ** * *
3566346 TTTAAT-CTCGGTCATTTTCACTTTTTGACTTGTGGTTTAATCCTC-ATTGTTTTACATTTTCTA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTT-CATTTTTTG
*
3566409 ACTCATGC
63 ACTCATGA
* * * *
3566417 TTTAATCCTTG-TCATTTTTATTTTTTGACTCATGATTTAAT-TCTGGTCGTTTTCATTTTTTGA
1 TTTAATCC-TGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
3566480 CTCATG-
64 CTCATGA
* * * * * * * *** *** *
3566486 TTATAAT-ATCGGTCGCTTTTTATTTTCTGACTCATGTTTTAATCTTAATTGCTTTCATTTTTAG
1 TT-TAATCCT-GATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTG
** *
3566550 ACTTGTGG
63 ACTCATGA
* * * ** * * * *
3566558 TTTATTCTTGGTGGTTTTCATTTTCTTG-CTCAG-GGTTTAGTCCCAGTCATTTTCATTTTTTAA
1 TTTAATCCTGATCATTTTCATTTT-TTGACTC-GTGGTTTAATCTCGGTCATTTTCATTTTTTGA
*
3566621 CTCATGT
64 CTCATGA
* ** * * *
3566628 TTTAATCCCGATCA-TTTCATTTTTTGACTCGTAATTTAATTTCGATAATTTTCACTATCATTTT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCA--TT---T-TCA----
*
3566692 TGTTTTTTGACTCATGG
56 --TTTTTTGACTCATGA
* * * * ** * ** *
3566709 TTTAGTCTTGATCGTTTTCATTTTTTGACTCATGACTTAATTTCTTTCATTTTTATTTCTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGAC
**
3566774 TTGTGA
65 TCATGA
* * * * * * * * * * * * *
3566780 TTTAATACTAATCGTTTTAATTTTCTGACTCATGATATAATCTTGGTCTTTTTGATTTTTTAACC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3566845 CATGG
66 CATGA
* * * * * * * * *
3566850 TTTAATCC-CATTCGTTTTCATTTTTTGAC-CTATAGTTTAATCTCAGTCAATTTAATTTTCTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTC-GTGGTTTAATCTCGGTCATTTTCATTTTTTGA
**
3566913 CTTGTGA
64 CTCATGA
* * ** * * * * * * * * *
3566920 TTTAAT-CGGGTTGTTTTTATTTTCTAACTCATGGTATAAACCCAGTCATTTTTATTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3566984 CATAA
66 CATGA
* * * * *
3566989 TTTAAT-CTCGATCACTTTCATTTTCTGACTCATGGTTTAATTTAC-ATCATTTTCATTTTTTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
*
3567052 CTTATGA
64 CTCATGA
* * * * * *
3567059 TTTAATTCTGGTCATTTTTATTTCTCT-AGCTCGTGTTTTAATCCTCGCT-ATTTTCATTTTTTG
1 TTTAATCCTGATCATTTTCATTT-TTTGA-CTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTG
*
3567122 ACTCATGG
63 ACTCATGA
* * * *
3567130 TTTAATCCCGATCGATTTTCA--TTTT-A---GTGGTTTCATCTCGATCATTTTCATTTTCTGAC
1 TTTAATCCTGATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
** *
3567189 TTGTGG
65 TCATGA
* ** * * * * *
3567195 TTTATTCCCAATCATTTT-ATTTTTTCTGAC-CTGTGGTTTTATCTCGGTCGTTTTTAGTTTTAG
1 TTTAATCCTGATCATTTTCA-TTTTT-TGACTC-GTGGTTTAATCTCGGTCATTTTCATTTTTTG
3567258 ACT-AGTGA
63 ACTCA-TGA
** ** ** ** * * **
3567266 TTTAATTTTGGCCATTTT-ATTTTTTGACTTATGACTTAATTTTGGTTGTTTTCATTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
3567330 -A-GTA
66 CATG-A
* * * * * * *
3567334 GTTTAATCTTGGTCATTTTTATTTTTTGACTCGTGATTCAGT-TCTGGTCATTTTTATTTCTTTG
1 -TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTT-TTTG
3567398 ACTCATGA
63 ACTCATGA
* * * ** * *
3567406 TTTAATGCTGGTCATTTTCATTTTTTGACTC---GTTTAATTTTAGTCATTTTCATTTTCTAACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
** *
3567468 TGTGG
66 CATGA
* * * * * *
3567473 TTTAATCTTGGTCATTTTCACTTTTTGACTTGTGGTTTTATCT---TCATTGTCTTACATTTTCT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCA-T-T-TT-CATTTTTT
** *
3567535 GACTTGTGC
62 GACTCATGA
* * * * * * * * *
3567544 TTTAATCCCTG-TCGTATTCATTTTTTGACACATTGTTTAATCCCTGTCATTTTTATTTTTTAAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3567608 TTATGA
65 TCATGA
* * * * * *
3567614 TTTAATCCTGGTCATTTTCATTTTTTTGATTCGTGGTATAAT-T-GTAGTCATTTTTTAGTTTCT
1 TTTAATCCTGATCATTTTCA-TTTTTTGACTCGTGGTTTAATCTCG--GTCA-TTTTCATTTTTT
**
3567677 GACTTGTCG-
62 GACTCAT-GA
* * * ** *
3567686 TTTAAT-CTCGATCGTTTTCATTTTTTGACTCATGGCTTAATC-CTGGTGGTTTTCATTTTCT-A
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
* *
3567748 GCTCAAGG
64 -CTCATGA
* ** * * * * *
3567756 TTTAGTCCT-AGTCATTTTCA-TTTTTGAC-CTGTACTTTAATTTCGATCGTTTTCTTTTTTTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTC-GTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3567818 CTTATGT
64 CTCATGA
* * * ** * * *
3567825 TTTAATCCCTG-TCATTTTTATTTTTTAACTCATAATTTAAT-TATGATAATTTTCATTATCGTT
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTC---AT--TT
*
3567888 TTTAGACTTTTGACTTGTGA
59 TTT-GAC---T--C--ATGA
** * * * * * * * * *
3567908 TTTAAT-CTCGATTGTTTTCATTTTCTAACTTGCGATATAATTTTGATCATTTTCA---TTTGAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3567969 TTGTGA
65 TCATGA
* * * * * *
3567975 TTTAATACC-GATCATTTTCATTTTCTGACTTGTGATTTAATCTCGATCATTTTCATTTTCTAAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* * *
3568039 CCACGG
65 TCATGA
* * * * * * *
3568045 TTTAAT-GTCGGTCGTTTTCATTTTCTGACCCATGGTTTAATCTCGATCATTTTCATTTTTTGAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3568109 TCATGA
65 TCATGA
* * ** * * * * * * *
3568115 TTTAAT-TTGGGTTGTTTTTATTTTTTGACTTGTGATTTAATCCCAGTCGTTTTTATTTTTTGAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3568179 TTGTGA
65 TCATGA
* * * * * ** * * *
3568185 TTTAATCTTGGTCGCTTTT-ATTTTCTAACTCGTGGTTTAAT-TCCCATCGTCTTCATTTTCTGA
1 TTTAATCCTGATC-ATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
**
3568248 CTTGTGA
64 CTCATGA
** * * * * * * * ** * *
3568255 TTTAATTTTGGTCTTTTTTATTTCTCTAACTTGTGGCTTAATCCTC-GTTGTCTTCATTTTCTGA
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGA
** *
3568319 CTTGTGG
64 CTCATGA
* * * * * * *
3568326 TTTAAT-CTCGATCGTTTTTCATTTTTTCAATAGTGGTTTCATCTAGGTCATTTTCTTTTTTTGA
1 TTTAATCCT-GATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
** *
3568390 CTTGTGG
64 CTCATGA
* * * * * * *
3568397 TTTAATCCTTG-TCATTTTAATTTTTTGACTCGTGGTTTAGTCTCGATCATTTTTAGTTGTAGAC
1 TTTAATCC-TGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3568461 TTGTGA
65 TCATGA
** * * * * * * * *
3568467 TTTAATTTTGGTCATTTTTATTTTTTGACTCGTGATTTAATTTC-ATCGTTTTTATTTTCTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3568531 -AGTGG
66 CA-TGA
* * * * *
3568536 TTTAATCC-CAGTCATTTTCATTTTTTGACTCGTGATTTAGTTTTGGTCA-TTTCTATTTCTTTG
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTC-ATTT-TTTG
3568599 ACTCATGA
63 ACTCATGA
* * ** * * * *
3568607 TTTAAT-ATCGATCATTTTCATTTTTTGACTTGTCATTTAAT-TCCAGTCGTTTTTATTTTCTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
3568670 CTCAT-A
64 CTCATGA
* * * * * ** *
3568676 GTTTAAT-CTCGATCATTTTCACTATTTGACTTGTGGTTTAATCCCTGTTGTTTTACATTTTCTG
1 -TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTT-CATTTTTTG
* *
3568740 ACTCGTGC
63 ACTCATGA
** * * * * * ** * *
3568748 TTTAATCCTTG-TTGTTTTCATTTTCTGACACATTGTTTAATCCCTATCATTTTTATTTTTAGAC
1 TTTAATCC-TGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3568812 TCGTGA
65 TCATGA
* * * * * * *
3568818 TTTAATCCTGGTCATTTTCATTTTTTTAACTCGTGGTATATTCCCGATCATTTTTCATTTTCTGA
1 TTTAATCCTGATCATTTTCA-TTTTTTGACTCGTGGTTTAATCTCGGTCA-TTTTCATTTTTTGA
*
3568883 CTTATCG-
64 CTCAT-GA
** * * * ** * * *
3568890 TTT-AT-CTGATCGCTTTCATTTTCTGACTCATGGTTTAATC-CTAGTGGTTTTCAATTTCTCAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
* *
3568952 TCAGGG
65 TCATGA
* ** * * * * * ** *
3568958 TTTAGTCCCAATCATTTTCATTTTCTGACTCATGCTTTAATTTCAGTTGTTTTCATTTTTTAACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
** *
3569023 TGTGT
66 CATGA
* * ** *
3569028 TTTAATCCTGGTCATTTTCATTTTTTGACTCATAATTTAATTTCGGTAATTTTTATTATCATTTT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGG------------TCATTTT
*
3569093 CATTTTTTGACTCATGG
54 CATTTTTTGACTCATGA
** * * * * * * * * *
3569110 TTTAAT-CTCGATTGTTTTCATTTTCTGCCTCATGATTTAATTTCGATCATTTTTATTTCTCTGG
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
*
3569174 CTTATGA
64 CTCATGA
*** ** ** * * * *
3569181 TTTAAAATTGATCATTTTCATTTTCGGACTCAAGATTTAATCTCGATCATTTTCATTTTCTAAC-
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3569245 CTATGG
66 C-ATGA
* ** * * * ** *
3569251 TTTAATCAC-GGTTGTTTTCATTTTCTGACTTGTGATTTAATCAAGGTCATTTTTATTTTTTGAC
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3569315 TCATGG
65 TCATGA
* * * * * * ** * *
3569321 TTTAATCTTGATCTTTTTTATTTTCTGACTCGTGATTTAATCTCGATCGCTTTCATTTTCTAACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3569386 CATGG
66 CATGA
* * * * * * * *
3569391 TTTAATTCC-CATCATTTTCATTTTTTGACTCGAGATTTAATTTTGATCATTTTTATTTCTCTGA
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
* *
3569455 CTCGTGG
64 CTCATGA
** ** * * ** *
3569462 TTTAATCCCCATTGTCTTCATTTTTTGACTCATGGTTTAATGC-CAATCATTTTTCATTTTTTTA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCA-TTTTCATTTTTTGA
* ** *
3569526 TTGGTGG
64 CTCATGA
* * * **** * ** *
3569533 TTTCAT-CTCAGTCGTTTTCATTTTTTGACTCGCAACTTAATAC-CTGTTGTTTTAATTTTTTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGA
*
3569596 CTCGT-A
64 CTCATGA
* * * * * * * * * * *
3569602 GTTTAATCCCGATCATTTTTAATTTTAGACTCATGATTTAATTTTGGTCATTTTTATTTTCTAAC
1 -TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3569667 TCATGA
65 TCATGA
** * * *
3569673 TTTAATTTTGATCATTTTCAATTTTTGACTAGTGGTTTAATC-CTAGTCATTTTCATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
**
3569737 TTGTGA
65 TCATGA
* * * * * *
3569743 TTTAGTTCCAG-TCATTTTTATTTCTTTGACTCATGATTTAATGC-CTGTCATTTTCATTTTTTG
1 TTTA-ATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTG
*
3569806 ACTTATCG-
63 ACTCAT-GA
* * * * * * *
3569814 TTTAATTCTGATCATTTTTATTTTTTGACTCATGATTTAATCTCGATCATTTTCACTTTTTAACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
**
3569879 TTTCG-
66 CAT-GA
** * * * ** *
3569884 TTTAATCCT-AGTTGTTTTACATTTTCT-AGCTCGTGCTTTAATTTTTGTCATTTTCATTTTCTG
1 TTTAATCCTGA-TCATTTT-CATTTTTTGA-CTCGTGGTTTAATCTCGGTCATTTTCATTTTTTG
* * *
3569947 ACACGTTA
63 ACTCATGA
* * * ** * *
3569955 TTTAATCCT-TTCATTTTTATTTTTTGACTTGTAATTTAATCTCGATCGCTTTTCATTTTCTT-A
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTC-ATTTTCATTTT-TTGA
*
3570018 CTCATGG
64 CTCATGA
*** * * * * * ** * *
3570025 TTTAATCCTGATTGCTTTCATTTTCTAACCCATAGTTTAATC-CTGGTGGTTTTCATTTTCTCAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
* * *
3570089 TTAGGG
65 TCATGA
* * ** * * * * *
3570095 TTTAGT-CTCAGTTGTTTTCATTTTTTGACTCGTGCTTTAATTTTGGTCGTTTTCATTTTTTAAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3570159 TCGTG-
65 TCATGA
* * * * ** * **
3570164 TTTAAGT-CTCAGTCATTTTTATTTTCTGACTAGTAATATAATTCCAATAATTTTCATTATCATT
1 TTTAA-TCCTGA-TCATTTTCATTTTTTGACTCG-----TGGTT----TAA-TCTC--GGTCATT
* * **
3570228 ATTATTTTTTGACTCATTG
52 TTCATTTTTTGACTCATGA
* * * * * *
3570247 TTTAAT-CTCTATTATTTTCATTTTTTGACTCG-GATTTAATTTCGATCATTTTTATTTCTTTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
**
3570310 CTTGTGA
64 CTCATGA
* * *
3570317 TTTAGTACTGATCATTTTCATTTTTTGACTCGTGATTTAATCTTGATCGTTTTCATTGTCATTTT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATC----TCG--------GTCATTTT
* * * * *
3570382 CCTTTTCTAACCCATGG
54 CATTTTTTGACTCATGA
* * ** * * * * ** * *
3570399 TTTGATCCTAGTTTGTTTTCATTTTCTGAC-CAATGCTTTAATCAT-GATTGTTTTCATTTTCTA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTC-GTGGTTTAATC-TCGGTCATTTTCATTTTTTG
3570462 ACTCATGA
63 ACTCATGA
* * * * * * *
3570470 TTTAATCCAGGTCATTTTTATTTTCTAACTCGTGGTTTAATC-CTGGTCATTTTTATTTTTTGAT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
3570534 TCATGA
65 TCATGA
* * * * ** * *
3570540 TTTAAT-CTAGATCGTTTTTATTTTCTAACTCGTGGTTTAAT-TCCCATCATTTTCATTTTCTAA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
3570603 CTCATGA
64 CTCATGA
* * * * * ** ** * *
3570610 TTTAATTCTGGTCATTTTTATTTCTCTGACTCATGGTTTAATC-CCATTGTCTTCATTTTTTTAC
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
** *
3570674 TCGGGG
65 TCATGA
* * * * * * ** * *
3570680 TTTAAT-CTCAATCGTTTTTCATTTTCTGACTGGTGGTTTCAT-TCAGTTGTTTTCATTTCTAG-
1 TTTAATCCT-GATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
*
3570742 CT-AGTGG
64 CTCA-TGA
* * * * * * * *** * *
3570749 TTT-ATCCTGGTCGTTTTTAGTTTTCGACTCATGATTTAATCTAAATCATTTTTAATTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3570813 CATAA
66 CATGA
** * * *
3570818 TTTAATTTTGGTCATTTTCATTTTTTGACTAGTGGTTTAATCCCGGTCATTTTCATTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
3570883 -AGTGA
66 CA-TGA
* * * * * * ** *
3570888 TTTAGTTCC-CATCAATTTT-GTTTCTTTAACTCGTGATTTAATTTTAGTCATTTTCATTTTTTT
1 TTTA-ATCCTGATC-ATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTG
* *
3570951 ACTCGTCA
63 ACTCATGA
** * * * * * *
3570959 TTTAATTATGGTCATTTTTATTTTCTGACTCATGGTTTAATCTTGGTCATTTTCACTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC-
**
3571024 TGTTG-
65 TCATGA
** ** * * * * * *
3571029 TTTAATCCCCATTGTTTTACATTTTCTGA-TGCATTGTTTAATCCCTGTTATTTTCA-TTTTTGA
1 TTTAATCCTGATCATTTT-CATTTTTTGACT-CGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
*
3571092 CTCGTGA
64 CTCATGA
* * ** * *
3571099 TTTAATCTTGGTCATTTTCATTTTTTGACTTATGGTATAATC-CGAGTCGCTTTTCATTTTTTGA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCG-GTC-ATTTTCATTTTTTGA
** *
3571163 CTTGTCA
64 CTCATGA
** *** * * * ** *
3571170 TTTAATCCCAATCGCATTCATTTTCTGACTCGTGGTTTAATATTGGTGGTTTTCATTTTCTCG-C
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTT-TTGAC
* * *
3571234 TTAGGG
65 TCATGA
* * * * * * *
3571240 TTTAGT-TTCAGTCGTTTTCATTTTTTGACTCGTGCTTTAAT-TTGAGTCATTTTCATTTTTTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCG-GTCATTTTCATTTTTTGA
*
3571303 CTCATGT
64 CTCATGA
* * ** * * *
3571310 TTTAATCCT-AGTCATTTTCATTTTTTTACTTGTAATTTAATTTTGGTAATTTTTGTTATTGTTT
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAA-TCTCG--------GTCA---TTT
*
3571374 TCATTTTTTGACTCATGG
53 TCATTTTTTGACTCATGA
* * * * * * * * *
3571392 TTTAAT-CTCAAACGTTTTCATTTTTTGACTTGTGATTTAATTTCGATCATTTTTATTTCTCTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
**
3571456 CTTGTGA
64 CTCATGA
* ** * * * * ** * * *
3571463 TTAAATATTGATCATTTTCATCTTCTGACTTGTGATTTAATCTAAGTCATTTTCATTTTCTAACC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3571528 CATGG
66 CATGA
* * * * * * ** *
3571533 TTTAATCCCGGTCGTTTTCATTTTCTGACTCATGGTTTAATC-CTAGTGGTTTTCATTTTTTCAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
* *
3571597 TCAGGG
65 TCATGA
* * * * * * ** *
3571603 TTTAGTACCCG-TCATTTTCATTTTCTGACTCATGCTTTAATTTCGGTTGTTTTCATTTTTTAAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
** *
3571667 TTGTGT
65 TCATGA
* * ** * *
3571673 TTTAATCCTGGTCATTTTCATTTTTTGACTCATAATTTAATTTCGATAATTTTTATTATCATTTT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCG------------GTCATTTT
*
3571738 CATTTTTTGACTCATGG
54 CATTTTTTGACTCATGA
** * * * * * * * *
3571755 TTTAAT-CTCGATTGTTTTCATTTTCTGCCTCGTGATTTAATTTCGATCATTTTTATTTCTCTGG
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
**
3571819 CTTGTGA
64 CTCATGA
*** ** * * * * * * * *
3571826 TTTAAAATTGATCATTTTCATTTTCGGACTCATGATTTAATCTTGATCACTTTCATTTTCTAACC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3571891 CATGG
66 CATGA
* ** * * * ** *
3571896 TTTAATCAC-GGTTGTTTTCATTTTCTGACTTGTGATTTAATCAGGGTCATTTTTATTTTTTGAC
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3571960 TCATGG
65 TCATGA
* * * * * * ** * *
3571966 TTTAATCCCGATCTTTTTTATTTTCTGACTCGTGATTTAATCTCGATCGCTTTCATTTTCTAACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3572031 CATGG
66 CATGA
* * * * * * * *
3572036 TTTAATTCC-CATCATTTTCATTTTTTGACTCGAGATTTAATTTTGATCATTTTTATTTCTCTGA
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
* *
3572100 CTCGTGG
64 CTCATGA
* ** * * * ** *
3572107 TTTAATCCCCG-TTGTCTTCATTTTCTAACTCGTGGTTTAATGC-CAATCATTTTTCATTTTTTT
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCA-TTTTCATTTTTTG
* ** *
3572170 ATTGGTGG
63 ACTCATGA
* * * * * * * *
3572178 TTTCATCTTGGTCGTTTTCATTTTTTGACTCGCGGTTTAATACT-TGTCGTTTTAATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGAC
*
3572242 TCATGG
65 TCATGA
* * * * * * * * * * *
3572248 TTTAATCCCGATCACTTTTTAATTTTAGACTCCTGATTTAATTTTGGTCATTTTTATTTTCTAAC
1 TTTAATCCTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3572313 TCATGA
65 TCATGA
** * *
3572319 TTTAATTTTGATCATTTTCATTTTTTGACTAGTGGTTTAATC-CTAGTCATTTTCATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
**
3572383 TTGTGA
65 TCATGA
* * * * *
3572389 TTTAGTTCCAG-TCATTTTTATTTCTTTGACT-GATGATTTAATGCT-TGTCATTTTCATTTTTT
1 TTTA-ATCCTGATCATTTTCATTT-TTTGACTCG-TGGTTTAAT-CTCGGTCATTTTCATTTTTT
* *
3572451 AACTAATCG-
62 GACTCAT-GA
* * * * * * *
3572460 TTTAAT-TTCGATCATTTTTATTTTTTGACTCATGATTTAATCTCGATCATTTTCACTTTTTAAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3572524 TTTTCG-
65 TCAT-GA
** * * * ** *
3572530 TTTAATCCT-AGTTGTTTTACATTTTCTAACTCGTGCTTTAATCTTTGTCATTTTCATTTTCTGA
1 TTTAATCCTGA-TCATTTT-CATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3572594 CACATTA
64 CTCATGA
* * * * *
3572601 TTTAATCCTG-TCATTTTTATTTTTTGACTTGTGATTTAATGC-CGATCGCTTTTCATTTTCTT-
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTC-ATTTTCATTTT-TTG
3572663 ACTCATCG-
63 ACTCAT-GA
*** * * ** * *
3572671 TTTAATCCTGATTGCTTTCATTTTTCGACCCGTGGTTTAATC-CTGGTGGTTTTCATTTTCTCAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
* * *
3572735 TTAGGG
65 TCATGA
* * ** * * * * *
3572741 TTTAGT-CTCAGTTGTTTTCATTTTTTGACTCGTGCTTTAATTTTGGTCGTTTTCATTTTTTAAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3572805 TCGTG-
65 TCATGA
* * * ** * ** *
3572810 TTTAAGT-CTCAGTCATTTTCATTTTCTGACTGGTAATAAATTCCAATAATTTTCATTATCATTA
1 TTTAA-TCCTGA-TCATTTTCATTTTTTGACTCG---T-GGTT----TAA-TCTC--GGTCATTT
3572874 TCATTTTTTGACTCATTG-
53 TCATTTTTTGACTCAT-GA
* * * ** * *
3572892 TTTAATCTCT-ATTATTTTCATTTTTTGACTCG-GATTTAATTTCAATCATTTTTATTTCTCTGA
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
**
3572955 CTTGTGA
64 CTCATGA
* ** * * * *
3572962 TTTAGTATTGATCATTTTCATTTTTTGACTCATGATTTAATCTTGATCGTTTTCATTATCATTTT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATC----TCG--GTCATTTTCA---T
* * *
3573027 CCTTTTCTAACCCATGG
57 --TTTT-TGACTCATGA
* * ** * * * * ** * *
3573044 TTTGATCCTAGTTTGTTTTCATTTTCTGAC-CAATGGTTTAATCACGATTGTTTTCATTTTCTAA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTC-GTGGTTTAATCTCGGTCATTTTCATTTTTTGA
3573108 CTCATGA
64 CTCATGA
* * * * *
3573115 TTTAATCCAG-TCATTTTTATTTTCTAACTCGTGGTTTAATC-CTGGTCATTTTTATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
3573178 TCATGA
65 TCATGA
* * * * ** * *
3573184 TTTAAT-CTAGATCGTTTTTATTTTCTAACTCGTGGTTTAAT-TCCCATTATTTTCATTTTCTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
3573247 CTCATGA
64 CTCATGA
* * * ** ** *
3573254 TTTAATTCTGGTCAGTTTT-ATTTCTCTGACTCGTGGTTTAATC-CCATTGTCTTCATTTTCTT-
1 TTTAATCCTGATCA-TTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTT-TTG
** *
3573316 ACTTGTGG
63 ACTCATGA
* * * * ** *
3573324 TTTAAT-CTCAATCGTTTTTCATTTTTTGACTAGTGGTTTCATCTCGGTTGTTTTCATTTTCT-A
1 TTTAATCCT-GATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
*
3573387 GCT-AGTGG
64 -CTCA-TGA
* * * * * * * *** * *
3573395 TTT-ATCCTGGTCGTTTTTAGTTTTGGACTCATGTTTTAATCTAAATCATTTTTAGTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3573459 CATAA
66 CATGA
** * * *
3573464 TTTAATTTTGGTCATTTTCATTTTTTGACTAGTGGTTTAATCTCGATCATTTTCATTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3573529 CGTGA
66 CATGA
* * * * * * * * * *
3573534 TTTAGTTCC-CACCAATTTT-GTTTCTTTAACTCATGATTTAATGTC-ATCATTTTCATTTTTTT
1 TTTA-ATCCTGATC-ATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTG
* **
3573596 ACTCGTCT
63 ACTCATGA
* * * * * * *
3573604 TTTAATTCTGGTCATTTTCATTTTTTAACTCATGTTTTAATC-CTAGTCATTTTCATTTTTTTAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
* *
3573668 TTGTAATTTAA
65 ---TCA--TGA
** ** * *** *
3573679 TTTTGGTAATTTTTGTTATTGTTTTCATTTTTTGACTCATGGTTTAATCTCAAACGTTTTCATTT
1 --TT--TAA-TCCTG--ATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT
* **
3573744 TTTTACTTGTGA
59 TTTGACTCATGA
** * * * * * * * *
3573756 TTTAATTTTGATCATTTTTATTTCTCTGACTTGTGATTAAATATCGATCATTTTCATTTTCTGAC
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3573821 TTGTGA
65 TCATGA
* * * * * * * *
3573827 TTTAAT-CTAAGTCGTTTTCATTTTCT-AGC-CAATGATTTAATCCCGATCATTTTCATTTTCTG
1 TTTAATCCTGA-TCATTTTCATTTTTTGA-CTC-GTGGTTTAATCTCGGTCATTTTCATTTTTTG
* *
3573889 ACCCATGG
63 ACTCATGA
* * * ** * * *
3573897 TTTAGTCCTGGTCCTTTTCATTTTTTGACTAATGATTTAAT-TCGGGTCCTTTTTATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
* *
3573961 TCGTGG
65 TCATGA
* * * * * * *
3573967 TTTAATCTTGGTCATTTTTATTTTTTGACTCATGATTTAATCTCGATCACTTTCATTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3574032 CATGG
66 CATGA
* * * * * * * *
3574037 TTTAATTCTTATCATTTTCATTTTCTGACTTGTGATTTAAT-TCTAGTCATTTTTATTTCTCTGA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTT-TTTGA
* *
3574101 CTCACGG
64 CTCATGA
** * * * * * **
3574108 TTTAATCCCTG-TTGTCTTCATTTTTTAACTCATGGTTTAATTTCGATTGTTTTTCATTTTTTGA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCG-GTCATTTTCATTTTTTGA
*
3574172 CT-AGTGG
64 CTCA-TGA
* * * * * * * *
3574179 TTTCATCCCGGTCATTTTCATTTTTTGACTCGTGATTTAATTTCGATCATTTTTATTTTCTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3574244 TATGA
66 CATGA
* ** * * * *
3574249 TTTAATTCCAG-TTGTTTTCATTTTTTGACTAGTGGTTTAATCTTGGTCATTTTCATTTTATAAC
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3574313 TTGTGA
65 TCATGA
* * * * * ** * * **
3574319 TTTAGTTCTGGTCATTTTTATTTCTTTAACTTATGATTTAATGTCAATCATTTTCATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3574384 TCATCG-
65 TCAT-GA
* ** * * * *
3574390 TTTAATTCTGATCATTTTTGTTTTCTAACTCGTGGTTTAATCTTGGTCATTTTCACTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
* *
3574455 TATGG
66 CATGA
** * * *
3574460 TTTAATCCCT-ATTGTTTTCATTTTCTGA-T-GTGTTGTTTAATC-CTTGTCATTTTTATTTTTT
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTG--GTTTAATCTC-GGTCATTTTCATTTTTT
** *
3574521 GACTTGTAA
62 GACTCATGA
* * * * * *** *
3574530 TTTAATCCTTATCGTTTTCATTTTTTAACTCATGGTATAATCCTAATTGC-TTTTCCTTTTTTGA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGT-CATTTTCATTTTTTGA
* *
3574594 CTCGTCA
64 CTCATGA
** * **
3574601 TTTAATCCCAATCATTTTCA-TTTTTGACTCGTGGTTTAATCTTGGTGGTTTTCATTTTCTTG-C
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTT-TTGAC
** *
3574664 TCGGGG
65 TCATGA
* * * ** * * ** *
3574670 TTTAGTCCT-AGTCATTTTCATTTTCTAACTTATGCTTTAAT-TCCAGTTGTTTTCATTTTTTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
*
3574733 CTCATGT
64 CTCATGA
* * * * * ** * * *
3574740 TTTAATCC-CAGTCATTTTTAATTTCTGACTTGTAATTTAATTTTAGTAATTTTCATTATCATTA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAA-TCTCG-----GTC---AT--TT-
* * *
3574804 TCATTTTCTAACTCATGG
53 TCATTTTTTGACTCATGA
** ** * * * * * * * *
3574822 TTTAATATTGATCGCTTTCATTTTTTGACTCATGATTTAATTTTGATCATTTTTATTTCTCTAAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGAC
*
3574887 TTATGA
65 TCATGA
** * * * ** * *
3574893 TTTAATACC-GATTGTTTTCATTTTCTGACTTGCT-ATTTAATCTCAATCATTTTTATTTTTTAA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCG-TGGTTTAATCTCGGTCATTTTCATTTTTTGA
3574956 C-C----
64 CTCATGA
* * * * * * * * * *
3574958 ---CATCCCGGTCATTTTCATTTTCTGACTCGTGATATAATCTCAGTCGTTTTTATTTTCTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3575020 CATGG
66 CATGA
* * *** * * * *
3575025 TTTAATTCC-CATCATTTTCATTTTCTGACTTACGATTTAATTTTGGTCA-TTT-A-TATTT--C
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3575084 TCA-GA
65 TCATGA
* * ** ** * * * * * *** *
3575089 -CTAAACCCCATTGTAATT-ATTTTCTGGCTCATGCTTTAATCTTAATCTTTTTTCA-TTTTTGA
1 TTTAATCCTGATCAT-TTTCATTTTTTGACTCGTGGTTTAATCTCGGTC-ATTTTCATTTTTTGA
** *
3575151 CTGGTGG
64 CTCATGA
* * * * * ** * * * *
3575158 TTTCAT-TTCAATCATTTTTATTTTCTGACTTATGGTTTAATCCCTGTCATTTTTATTTTTGGAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3575222 ACATGG
65 TCATGA
** * * * * * *
3575228 TTTAATCCCCATCATTTTCAGTTTTAGACTCG-GGATTTAATTTTGGTCATTTTTATTTTTTGAG
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGG-TTTAATCTCGGTCATTTTCATTTTTTGAC
3575292 TCATGA
65 TCATGA
** * * * *
3575298 TTTAATTTTGATCTTTTTCATTTTTTAAC-CAGTGGTTTAATC-CCG--A---TCATTTTTTAAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTC-GTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3575356 TCATGT
65 TCATGA
* * * * * * *
3575362 TTTAAT-CTCGACCATTTTCATTTTTTAACTCATGTTTTAATCTTGGCCATTTTCATTTTTTTAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3575426 TCATAGTTAA
65 TCAT-G---A
* * * * * * * *
3575436 TTTTGATTATTTTCATTATCATTTTC-GTTTCTGACTCATGGTTTAATCTCGATCGTTGTCATTT
1 -TTT-A--A---TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT
**
3575500 TTTGACTTGTGA
59 TTTGACTCATGA
** * * * * * * *
3575512 TTTAATTTTGATCATTTTTATTTCTTTGACTTGTGATTTAATATCGATTC-TTTTCATTTTCTAA
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCG-GTCATTTTCATTTTTTGA
3575576 CTCATGA
64 CTCATGA
* * * * * * * * ** *
3575583 TTCAAT-CTCACTCGTTTTCATTTTCTAACCCATGGTTTAATCCCAATCATTTTCATTTTCTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3575647 CCATGG
65 TCATGA
** * * * ** ** *
3575653 TTTAATTGTGGTCATTTTCATTTTTTGACTTGTGATTTAATCT-GGATTGTTTTTGTTTTCTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGG-TCATTTTCATTTTTTGAC
*
3575717 TCATGG
65 TCATGA
* * * * * * ** * * ** *
3575723 TTTAATCTTGGTCGTTTTTATTTTCTGACTCATTATTTAATATTGGTTGTTTTCATTTTCTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3575788 CATGG
66 CATGA
* ** * * * *
3575793 TTTAATTCC-CATCGCTTTCATTTTTTGACT--T-G-TGAAT-TCTGGTCATTTTTATTTCTCTA
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTT-TTTG
* *
3575852 ACTCGTGG
63 ACTCATGA
* * ** * * * *
3575860 TTTAAT-CTCGATCATTTTCACTTTTTGACTTGTGGTTTAATCCTCATTGATTTACATTTTCTAA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGA
* *
3575924 CTCGTGC
64 CTCATGA
* * * *
3575931 TTTAATCCCT-ATCATTTTCATTTTCTGACGT-GTTGTTTAATC-CTTGTCATTTTTATTTTTTG
1 TTTAAT-CCTGATCATTTTCATTTTTTGAC-TCGTGGTTTAATCTC-GGTCATTTTCATTTTTTG
**
3575993 ACTTGTGA
63 ACTCATGA
* * * * * * * *
3576001 TTTAAT-ATCAGTTATCTTCATTTTTTGACTCATGGTATAATCTCAGTCATTTTTCATTTTCTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCA-TTTTCATTTTTTGA
3576065 CTC--G-
64 CTCATGA
* * ** * *
3576069 TTTAAT-CTAGATCGTTTTCATTTTTTGACTCGTTGTTTAATGCT-GGTGGTTTTCATTTTCTCA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGA
* *
3576132 C-CTAGGG
64 CTC-ATGA
** ** * * * * *
3576139 TTTTGTCCCAATCATTTTCATTTTCTGACTCGTGCTTTAATTTTGGTCATTTTCATTTTTTAACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3576204 CATGT
66 CATGA
* * * ** * **
3576209 TTTAATCCTGACCATTGTT-ATTTTCTGACTCATAATTTACTTTCGATAATTTTCATTATCATTT
1 TTTAATCCTGATCATT-TTCATTTTTTGACTC-----GT-GGTT---TAA-TCTC--GGTCATTT
* * *
3576273 TCATTTTCTGACACATGG
53 TCATTTTTTGACTCATGA
* ** * * * * * * * * * * *
3576291 TTTTAATCTCA--ATTGTTTTCATTTTCTAACTCATGATTTAATTTTGATCATTTTTATTTCTCT
1 TTTAATCCTGATCA-T-TTTC-ATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTT
3576354 GACT-AGTGA
62 GACTCA-TGA
* * * * **
3576363 TTTAATAGC-GATCATTTTCATTTTTTGACTCGTGATTTAAT-TCTAGTCATTTTTATTTCCCTG
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTT-TTTG
*
3576426 AC-CATGG
63 ACTCATGA
** * * ** * *
3576433 TTTAATCCCT-ATTGTCTTCATTTTTTGACTCATGGTTTAATC-CTAATCATTTTTCATTTTCTA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCA-TTTTCATTTTTTG
** *
3576496 ACTGGTGG
63 ACTCATGA
* * * * * * ** * *
3576504 TTTCACCCCGATCATTTTCATTTTTTGACTCATAGTTTAATCCCTATCATTTTAATTTTTTTACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
* *
3576569 CGTGG
66 CATGA
* * * * * * * * * *
3576574 TTGAATCC-AAGTCATTTTCAGTTTTAGACTCATGATTTAATTTTGGTCATTTTTATTTTCTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3576638 TTATAA
65 TCATGA
* * ** ** * * *
3576644 TTTAATTCC-AATCGTTTTCATTTTTTGACTAATGGTTTAATC-CTAATCATTTTTATTTTCTAA
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
* *
3576707 CTCGTAA
64 CTCATGA
* * * * * ** * *
3576714 TTTAGTTCCAG-TTATTTTTATTTCTTTGACTCATTATTTAATGTCAGTCATTTTCATTTTTTGA
1 TTTA-ATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
** *
3576778 CTGGTCA
64 CTCATGA
* * * * * *
3576785 TTTAATTCT-AGTCATTTTAATTTTTTGACTCATGGTCCT-ATTTCGGTCATTTTCACTTTTTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGT-TTAATCTCGGTCATTTTCATTTTTTGA
** *
3576848 CTTGTGG
64 CTCATGA
** * * * * * **
3576855 TTTAATCCCTG-TTGTTTTACATTTTTTGAATCATGCTTTAATCTCTGTCGTTTTCATTTACTGA
1 TTTAAT-CCTGATCATTTT-CATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* **
3576919 TGTGTTG-
64 -CTCATGA
* * * * *
3576926 TTTAATCCCTG-CCATTTTTATTTTTTGACTCTTGATTTAATC-CTGGTCATTTTTATTTTTTGA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
*
3576989 CTCGT-A
64 CTCATGA
* ** * * * ** ** *
3576995 GTATAATCCCAATCATTTTTCAATTTTTGACTCATCGTTTAATC-CTTATCGCTTTCATTTTCTG
1 -TTTAATCCTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTG
*
3577059 ACTCATGG
63 ACTCATGA
* * * * ** * * ** * *
3577067 TTTAATCCCGGTGC-TTTTCATTTTCTCACTAAAT-GTTTAGTCCCAATCGTTTTCATTTTCTGA
1 TTTAATCCTGAT-CATTTTCATTTTTTGACT-CGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
*
3577130 CTCATGC
64 CTCATGA
* * * * * * *
3577137 TTTAATACT-AGCCTTTTTCATTTTTTAACTCGTGTTTTAATCTTGGCCATTTTCACTTTCTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCA-TTT-T---
* *
3577201 TTGTAATTAATTTTGA
60 TTG--ACTCA---TGA
** ** * * * * * ***
3577217 TTATTTTAATTATCATTTTTATTTTCTGACTCATGGTTTAATGTCAAACATTTTCATTTTTTGAC
1 TT-TAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3577282 TTGTGA
65 TCATGA
* * * * * * *
3577288 TTTAAT-CTCGGTCATTTTCCTTTTCTAACCCATGGTTTAATC-CTGGTCATTTTCATTTTCTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTG-
*
3577351 AC-CATGG
63 ACTCATGA
* * * * * *
3577358 TTTAATCCCGATCATTTTCATTTTTTGACTCTTGATTTAATCTAGGCCATTTTTATTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3577423 CGTGA
66 CATGA
* * * * * *
3577428 -TTAATCCT-AGTCATTTTTATTTTCTT-ATTCATGATTTAATCTCGATCGTTTTCATTTTTTGA
1 TTTAATCCTGA-TCATTTTCATTTT-TTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* * *
3577490 CCCGTGG
64 CTCATGA
** * * * *
3577497 TTTAAT--TGCCATTGTTTTCATTTTTTGACTCGTGATTTAATTTTGGTCATTTTTATTTCTTTG
1 TTTAATCCTG--ATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTG
*
3577560 ACTCATGG
63 ACTCATGA
** ** * * * * * *
3577568 TGCAATTCCT-ATTGTCTTCATTTCTTGACTTGTAGTTTAATCTCGATCATTTTTCATTTTCTGA
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCA-TTTTCATTTTTTGA
* ** *
3577632 TTGGTGG
64 CTCATGA
* * * * * * * * * *
3577639 TTTCAT-CTCGGTCATTTTCATTTTCTAACACGTGGTTTAATCCCCGTCGTTTTCAGTTTTAGAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3577703 TCATGA
65 TCATGA
* * * * * * * * **
3577709 TTTAGT-TTCGACCATTTTTATTTTCTGACTCATGATTTAAT-TCTAGTTGTTTTCATTTTTTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
*
3577772 CT-AGTCA
64 CTCA-TGA
* * * * * * *
3577779 TTTAAT-CTTAGTCATTTTCATTTTTTGACTTGTTGTTTAATTTTGGTCATTTTCCTTTTTCTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTT-TGA
* *
3577843 CTTATGG
64 CTCATGA
* * * * ** *
3577850 TTTAAT-CTCGATCATTTTCACTTTTTGACTTGTGGTTTAATCCCCGTTGTTTTACATTTTCTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTT-CATTTTTTGA
* *
3577914 CTCGTGC
64 CTCATGA
* * * * * * ** * *
3577921 TTTAATCCCT-ATCATTTTCATTTTCT-AATACATTGTTCAATCCCAATCATTTTTATTTTTTAA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACT-CGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
3577984 CTCATGA
64 CTCATGA
* * * * * * *
3577991 TTTAATCCTGGTCGTTTTCATTTTCTGACTCATGGTATAATC-CTTGTCATTTTTCATTTTCTGA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCA-TTTTCATTTTTTGA
**
3578055 CTTGTCG-
64 CTCAT-GA
* * * * * * ** * * *
3578062 TTTAAT-CTCGATCACTTCCATTTTCTAACTCATGGTTTAATCTTGGTGGTTTCCATTTTCTCAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3578126 TTAGGGA
65 TCA-TGA
* ** * **** * * ** * *
3578133 -TTAGTCCCAATCATTTTAATTTTTTGACTCACACTTTAATTTTGGTTGTTTTCATTTTCTAACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
** *
3578197 TGTGT
66 CATGA
* * * * ** * * *
3578202 TTTAATCCCGATCATTTTTATTTTCTGACTTGTAATTCAATTTTGGCAATTTTCATTATCGTTTT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGG------TC---A---TTTT
* *
3578267 CATTTTTTGACTCGTGG
54 CATTTTTTGACTCATGA
* * * * * * * * *
3578284 TTTAATCTTGATCGTTTTCA-TTTCTGACTCGTGATTTAATTTTGATCATTTTTATTTCTATGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGAC
**
3578348 TTGTGA
65 TCATGA
* * ** * * * * *
3578354 TTTAATACC-AATCATTTTCATTTTTTGACTCATAATTTGATCTCTGTCATTTTCGTTTTCTAAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3578418 TTGTGA
65 TCATGA
** * * * * *
3578424 TTTAATCCCAATCATTTTCATTTTCTGACTCATGATTT-A-CAT-GGTCGTTTTCATTTTCTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TCGGTCATTTTCATTTTTTGAC
*
3578486 TCAAGA
65 TCATGA
* * * * * * *
3578492 TTTAAT-C-GAAGTCATTTTTATTTTCTGACTCATGATTTAATCTCGATCATTTTCATTTTCTAA
1 TTTAATCCTG-A-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* * *
3578555 CCCGTGC
64 CTCATGA
* * * * * *
3578562 TTTAATTCC-AATCATTTGCATTTTCTGACTCATGATTTAAT-TCTGGTCATTTTTATTTATTTG
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTT-TTTG
* *
3578625 ACTCGTGG
63 ACTCATGA
* * ** *
3578633 TTTAAT-TTAGGTTGTTTTCATTTTTTGACTAGTGGTTTAATC-CTGGTCATTTTCATTTTTTTG
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCA-TTTTTTG
*
3578696 ACTTATGA
63 ACTCATGA
** * * * * * * *
3578704 TTT-ATTTTCGAGCATTTTTATTTCTTTGACTCGT-ATTTAATGTTGATC-GTTT--TTTTTT-A
1 TTTAATCCT-GATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
*
3578763 CTCATCA
64 CTCATGA
** * * * ** *
3578770 TTTAATTTTGGTCATTTTCATTTTCCT-ACTCGTGGTCTAATCTTAGTCATTTTCAATTTTTGAC
1 TTTAATCCTGATCATTTTCATTTT-TTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
** *
3578834 TTGTGG
65 TCATGA
* ** * * * * * * * *
3578840 TTTAATCCTCATTGGTTTACATTTTCTGACTCATGCTTTAATC-CTTGTCGTTTTCATTTTCTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
**
3578904 CGTGTTG-
64 C-TCATGA
* * * * * *
3578911 CTTAATCCTTATCATTTTTATTTTTTGACTCATGATTTAATCAT-GGT-AATTTCATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TCGGTCATTTTCATTTTTTGAC
* *
3578974 TCGTGG
65 TCATGA
* * * * * * *
3578980 TATAAT-CTCGATCGTTTTTCATTTTTTGACTCATCGTTTAATC-C--TAATTGCTTTCACTTTC
1 TTTAATCCT-GATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCA-T--TTTCATTTTT
* ** *
3579041 TAACTTGTGG
61 TGACTCATGA
** * * * ** * ** * *
3579051 TTTAATCCT-AGTGGTTTTCATTTTCTCATTTATGGTTTAGTC-CTAATCGTTTTAATTTTTTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
3579114 CT--TGCA
64 CTCATG-A
** ** * * * * * * *
3579120 CTTTAATTTTGGCCATTTTCAATTTTTAACTTGTGTTTTAGTCT--GCCTATTTTCATTTTCTGA
1 -TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTC-ATTTTCATTTTTTGA
* * *
3579183 TTCGTAA
64 CTCATGA
** * ** * * ** * *
3579190 TTTAATTTTGATAATTTTCATTATCAT-ATTCTTTTTTTGACTCGTGGTTTAGTCTCTATCATTT
1 TTTAATCCTGATCATTTTCATT-TTTTGACTCGTGGTTT-AATC-TCG----G--TC-AT--TT-
* *
3579254 TCATTTTCTAACTCATGA
53 TCATTTTTTGACTCATGA
** * * ** ** ** * *
3579272 TTTAATTTTAATAATTTTTTGTTTAATCTTGATCATTTTCATTTTCCAA-CTC-GTGA-TTTAAT
1 TTTAATCCTGATCA-TTTTCATTT--T-TTGA-C-TCGT-GGTTT--AATCTCGGTCATTTTCAT
*** **
3579334 TTTGTCATTTTTCATTT
57 TTT-T--TGACTCATGA
* * * * * * *
3579351 TTTGA-CTTG-TGC-TTTAATCCTAGTGTTTTTTA-T--T-TTTTGA-CTC-GTTA-TTT-A-AT
1 TTTAATCCTGAT-CATTT--T-C-A-T-TTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT
* * *
3579404 CTTG-GTCAT-T
59 TTTGACTCATGA
* * * * **** * ** * * * *
3579414 TTTATTTTCTAACTCATGGTTT-AATTCCCAACGTTTTCTTTTTTTGA-CT-TGTGA-TTT-A-A
1 TTTA-ATCCTGA-TCAT--TTTCATTTTTTGAC----TCGTGGTTTAATCTCGGTCATTTTCATT
* *
3579473 TTTTG-GTCAT-T
58 TTTTGACTCATGA
* * * *** * * * * *
3579484 TTTATTTCTCTGACTCTTGGTTTAATCCCCATTGTCATCAT-TTTCTGA-CTCGTGGTTTAATCT
1 TTTA-ATC-CTGA-TCAT--TTTCAT--TTTTTGAC-TCGTGGTT-TAATCTC--GG--TCAT-T
* * * * *
3579547 CGATCGTTTTTCATTTACTAAATGGTGG
52 --TTC-ATTTT--TTGACT-CA---TGA
* * ** * * * ** *
3579575 TTTCAT-CTCGGTTGTTTTCATTTTTTGACTCGTGGTGTAATC-CTTGTCATTTTAATTTGCTAA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
* *
3579638 CTCGTGG
64 CTCATGA
* * * * * * * * * * ** *
3579645 TTTAAT-CTCAATTATTTTTAGTTTTAGACTCATGATTTATTTTCAGTCATTTTTGTTTTCTGAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3579709 TCCA-GA
65 T-CATGA
* ** * * *
3579715 TTTAAT-TTCGATCATTTTCATTTTTCAACTAGTGGTTTAATC-CTAGTCATTTTCATTTTCTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
*
3579778 CTCGTGA
64 CTCATGA
* * * * * * * *
3579785 TTTAGT-TTCAGTCATTTTTATTTCTTTAACTCGTGATTTAATGCTAGG-CATTTTCATTCTTTG
1 TTTAATCCTGA-TCATTTTCATTT-TTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTG
*
3579848 ACTCATCA
63 ACTCATGA
* * ** * * *
3579856 TTTAAT-TTCGGTCGA-TTTCATTTTTTGACTTATGGTCTAATCTTGGTCATTTTCACTTTTTGA
1 TTTAATCCT-GATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
** *
3579919 CTTGTGG
64 CTCATGA
* ** * * * * ** * *
3579926 TTTAATCCTCATTGTCTTACATTTTCTAACTCATACTTTAATCCCTGTCATTTTCATTTTTTGA-
1 TTTAATCCTGATCAT-TTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3579990 TGCGTTG-
65 T-C-ATGA
* * * ** * *
3579997 TTTAATCCTTG-TCATTTTTATTTTTTGACTCATGATTTAATC-CTTATCATTCTCATTCTTTGA
1 TTTAATCC-TGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
** *
3580060 CTTGTGG
64 CTCATGA
* * * * * * * ** * ** *
3580067 TATCAT-CTAGGTCATTTTTTAGTTTCTGACTTGTCATTTAATCTCGATCGCTTTCATTTTCTGA
1 TTTAATCCT-GATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
** *
3580131 CTTGTGGT
64 CTCAT-GA
** * ** * * * * ** * ** * **
3580139 TTTAATGTTGGT-GGTTCCATTTTCTCACGCAAGGTTTAGTCTTAGTTATTTTCATTTTCCGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
3580203 --TGCA
66 CATG-A
* * * ** * * * *
3580207 CTTTAATTCC-GATCGTTTTCATTTTTTAACTCTTATTTTAATCCCAGCCATTTTCATTTTCTGA
1 -TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
*
3580271 CTCGTAATTTAA
64 CTC---A--TGA
* * * **
3580283 TTTTGGTAATTTTCATTATCATTTTCATTTTTTGACTCATGGTTTAATCTCAATCATTTTCATTT
1 --TT--TAA---TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT
*
3580348 TCTGACTCATGA
59 TTTGACTCATGA
* * * * * * * * *
3580360 TTTAAT-TTGGATCATTTTTATTTCTCTAACTTGTGATTTAATAC-CGATCATTATCAATTTTTG
1 TTTAATCCT-GATCATTTTCATTT-TTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTG
*
3580423 ACTCGTGA
63 ACTCATGA
* * * * * * *
3580431 TTTAAT-CTAAGTTATTTTCATTTTCTAACTCATGGTTTAATCCCGATCATTTTCATTTTTTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3580495 CCATGG
65 TCATGA
* * * * * * *
3580501 TTTAATCAT-AGTCGTTTTTATTTTCTGACTCATGATTTAAT-TCGGGTCATCTT-ATTTTTTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
*
3580563 CTCATGG
64 CTCATGA
* * * * ** * * ** *
3580570 TTTAATTCTGGTCATTTTTATTTCTCTGACTCACGGTTTAATCCCTGTTGTCTTCATTTTTTTGA
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCA-TTTTTTGA
*
3580635 CTCATGG
64 CTCATGA
* * * * * * *
3580642 TTTAATCCAT-ATCATTTTTCATTTTCTAACTGGTGGTTTCATCTCGGTCGTTTTCATTTTCTAA
1 TTTAATCC-TGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3580706 CTCGTGG
64 CTCATGA
* ** * * * * * *
3580713 TTTAATCCCT-ATCATTTTAATTTTTTGACTTATGGTTTAACCCCAGTTC-TTTTTAGTTTTAGA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
*
3580776 CTCGTGA
64 CTCATGA
* * * * * * ** **
3580783 TTTAAT-TTAGATCATTTTTATTTTCTGACTCATGATTTTAATTTCTATTGTTTTCATTTTTTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTG-GTTTAATCTCGGTCATTTTCATTTTTTGA
*
3580847 CT-AGTGG
64 CTCA-TGA
* * * * * * *
3580854 TTTAATCC-CAGTCATTTTCATTTTCTGATTCAT-GATT-ATTTCTGGTCATTTTTATTTCTTTG
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTT-TTTG
3580916 ACTCATGA
63 ACTCATGA
* * ** * * * *
3580924 TTTAAT-GTCGATCATTTTCATTTTTTTACTTATCGTTTAATTTCGGTCATTTTCATTTTCTGCC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3580988 TCGTGG
65 TCATGA
* * * * * **
3580994 TCTAATCACAG-TCATTTTCACTTTTTGACTTGTGGTTTAATC-CTTGTTGTTTT-ATATTTTCT
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCAT-TTTT-T
*
3581056 GACTCATGC
62 GACTCATGA
* * * * * * * ** *
3581065 TATAATCAAT-ATCGTTTTCATTTTCTGGCAT-GTTGTTTAATCCCTATCATTTTTATTTTTTGA
1 TTTAATC-CTGATCATTTTCATTTTTTGAC-TCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
*
3581128 CTCGTGA
64 CTCATGA
* * * * * * ** ***
3581135 TTTAAT-CTCGATTATTTTTCATTTTCTGAGTCATTGTTTATTCTCAATTGCTTTCATTTTTTGA
1 TTTAATCCT-GATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3581199 CTAATGT
64 CTCATGA
** * * * ** * * * ** * * *
3581206 TTTAATCCT-AGTGGTTTTCATTTTCTCATTCAAGGTTCAGTC-CTAGTTGTTTTAATTTTCTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
*
3581269 CTTGCACTTTAAA
64 C-T-CA---T-GA
* * * * **
3581282 CCTTAATTAACTGTCACTGATTTTCA-TTTTTGACTAAACCTAATTTAGAAATCAAAATACTTGG
1 -TTTAA-T-CCTG--A-TCATTTTCATTTTTTGACT---CGTGGTTT---AATC----T-C--GG
* *** ***
3581346 TTA-AACCATATCATTTT-TGACATCG-
47 TCATTTTCAT-T--TTTTGACTCAT-GA
* * * * ** ** * ** **
3581371 TGATTTAA-AC-GATCATTTTTATTTCTCTGACTTATGAATTAATATCAATGGTTTTCATTTTTT
1 T-TT--AATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTT
3581434 GACTCATGA
62 GACTCATGA
* * * * * * * *
3581443 TTTGAT-CTCAGTCATTTTCATTTTCTAAC-CTATGGTTTAATCTCGATCGTTTTCATTTTCTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTC-GTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3581506 CCCTTGA
64 CTCATGA
* * * * * * ** * * *
3581513 TTTAATCCT-AGCCATTTTCATTTTCTGACTCATGATTTAGTGTAAGT-ATTTTTTATTTTCTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCA-TTTTCATTTTTTGA
** *
3581576 CTTGTGG
64 CTCATGA
* ** * * * * * * *
3581583 TTTAATCCTGGTGGTTTTTATTTTCTGACTTGT-GATTAATCTCGATTATTTTCATTTTACT-AC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTT-TTGAC
* *
3581646 TCGTGG
65 TCATGA
* * * * * * * *
3581652 TTTAATTCC--ATCATTTTCATTTTCTAACTTGTGATTT-ATTTCTAGTCATTTTTATTTCTCTG
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTT-TTTG
* *
3581714 ACTCGTGG
63 ACTCATGA
* * * * * * *
3581722 TTTAATCCTCGTGGTTTAATCCTTATCTTTTAATTTTTAACTCG-TGGTTAATCCCAGTCATTTT
1 TTTAAT-C-C-T-G----AT-C--AT-TTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTT
* *
3581786 CAGTTTTAGACTCATGA
54 CATTTTTTGACTCATGA
* * * * * * * * *
3581803 TTTAAT-TTCGATCATTTTTATTTTTTGACTCATGATTTAATTTTGATCATTTTCTTTTTTTAAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3581867 T-AGTGG
65 TCA-TGA
* * * * * * * *
3581873 TTTAATCC-CAGTCGTTTTCATTTTTTGACTCATGATTTAATTTCGATCATTTTTATTTTTTAAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3581937 TTTTGA
65 TCATGA
** * * ** * * * * * *
3581943 TTTAATGTTGTTCATTTTCATTTTTTGACTTGTCATTTAATTTTGATAATTTTCATTTTCTAACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
* * *
3582008 TAAGG
66 CATGA
* * * * * ** * * *
3582013 TCTAAT-CTCGGTCATTTTTACTTTTTGACTTGTGGTTTAATCCTC-GTTGTTTTACAATTTGTA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTT-CATTTTTTG
** *
3582076 ACTTTTGC
63 ACTCATGA
* * *** * * *
3582084 TTTAATCCCTG-TCATTTTTATTTTTTTACTTAAGATTTAATCTCGATCATTTTTATTTTTTGAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3582148 TCAT-A
65 TCATGA
* ** * * * * * * *
3582153 GTATAATCCTGATCATTTTTCATTTTTTGACTAATCGTTCAATCCCGATCACTTTCATATTCTGA
1 -TTTAATCCTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
** *
3582218 CTTGTGG
64 CTCATGA
** * * ** * * * * * * *
3582225 TTTCTTCTTGGTGGTTTTCATTTTCTCACTAAG-GGTTTAGTC-CTAGTCATTTTCATTTTCTAA
1 TTTAATCCTGATCATTTTCATTTTTTGACT-CGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
* *
3582288 GTCATGC
64 CTCATGA
* * * * * * * **
3582295 TTTGAT-TTCAGCTATTTTCATTTTTTAACTTGTGTTTTAATCTCGACCATTTTCATTTTTTGAC
1 TTTAATCCTGATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3582359 TTGTAATTTAA
65 ---TCA--TGA
* * * * *
3582370 TTCTGGTAATTTTCATTATCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTTATTT
1 -T-T--TAA---TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT
3582435 TTTGACTCATGA
59 TTTGACTCATGA
* * * * * *
3582447 TTTAAT-TTCGATCATTTTTATTTCTCTGACTGGTGATTTAATAC-CGATCATTTTCATTTTTTG
1 TTTAATCCT-GATCATTTTCATTT-TTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTG
3582510 ACTCATGA
63 ACTCATGA
* * * * * * **
3582518 TTTAAT-ATCG-TCATTTTCGTTTTCTT-ACCCATGGTTTAATCTAGATCATTTTCA-TTTTCAA
1 TTTAATCCT-GATCATTTTCATTTT-TTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3582579 ATCTATGG
64 CTC-ATGA
* * * * * * *
3582587 TTTAGTCCCT-ATCATTTTCATTTTCTGACTCATGATTTAATCTAGGTCATTTTTATTTTCTGAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3582651 TCATGG
65 TCATGA
* * * ** ** * *
3582657 TTTAATCCT-ACTCATTTTTATTTTTTGACTCATGATTTAATCTTAGTGGTTTTCATTTTCTAAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3582721 TCGTGG
65 TCATGA
* * * * * * * *
3582727 TTTAATTCC-CACCTTTTTCATTTTTTGACTCGTGATTTAATTTTGGTAATTTTTATTTCTTTGA
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
*
3582791 CTCATGG
64 CTCATGA
* ** *
3582798 TTTAATCCCCG-T--TTCTTCATTTTTTGACTCGTGGTTTAATC-CTAATCATTTTTCATTTTCT
1 TTTAAT-CCTGATCATT-TTCATTTTTTGACTCGTGGTTTAATCTC-GGTCA-TTTTCATTTTTT
** *
3582859 GACTGGTGG
62 GACTCATGA
* * * *** * ** * * *
3582868 TTTCAT-CTCAGTCGTTTTCAAAATTTGACTCATGGTTTGAATCTCACTCATTTTAATTTTCTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTT-AATCTCGGTCATTTTCATTTTTTGA
*
3582932 CTCATGG
64 CTCATGA
* * * * * * ** * *
3582939 TTTAAT-CTCAGTCATTTTCAGTTTTAGACTTGTGATTTAATTTCAATCATTTTTATTTTATGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3583003 TCGTGA
65 TCATGA
* * * * **
3583009 TTTAAT-ATCG-TCATTTTTATTTTTTGACTAGTGGTTTAATCCCAATCATTTTCATTTTTTGAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3583072 TCGTGA
65 TCATGA
* * * * * * *
3583078 TTTAGTTCCAG-TTATTTTTATTTCTTTGACTAGTGATTTAATGTCGGTCATTTTCATTTTTTGA
1 TTTA-ATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
*
3583142 CTTATCG-
64 CTCAT-GA
* * * * * * *
3583149 TTTAAT-TTCAATCATTTT-ATTTTCTAACTCGTGATCTAATCTCGGTCATTTTCACTTTTTGAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
** *
3583212 TTGTGG
65 TCATGA
* * ** * * * *
3583218 TTTAATCTTCATTGTTTTACATTTTTTGACTCGTGCTTTAATCACTGTCGTTTTCATTTTTTGA-
1 TTTAATCCTGATCATTTT-CATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3583282 TGCATTG-
65 T-CA-TGA
* * ** * ** **
3583289 TTTAATCCCT-ATCATTTTTATTTTTTGACTCATGCATTAATCCCATTTGTTTTCATTTTTTGAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3583353 AT-GTGG
65 -TCATGA
* * * * * * **
3583359 TATAATCCTGATCATTTTTCAATTTATGACTCATTGTTTAA--TCGATCGCTTTCATTTTTTGAC
1 TTTAATCCTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3583422 TCCT-A
65 TCATGA
* ** * * ** * * ** * *
3583427 GTTTAATCCTGGTGGTTTTCATTTTCTCACTCAAGGTTTAGTCCCAATCATTTTCATTTTCTAAC
1 -TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3583492 TC--GCA
65 TCATG-A
* * * * * * *** *
3583497 CTTTAAT-TTCGGT-AGTTTTCATTTTTTAACTCATGTTTTAATCCCAACCATTTTCATTTTCTG
1 -TTTAATCCT-GATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTG
*
3583560 ACTCATAA
63 ACTCATGA
** * * *
3583568 TTTAATTTTGATAATTTTCATTATCATTT---TCAT-TTTCTAA-CTCGTGGTTTAATCTCGATT
1 TTTAATCCTGATCATTTTCATT-T--TTTGACTCGTGGTT-TAATCTC--GG-------TC-A-T
* **
3583628 GTTTTCATTTTTTGACTTGTGA
51 -TTTC-ATTTTTTGACTCATGA
* * * * * ** ** *
3583650 TTTAAT-TTCGATCATTTTTATTTCTTTGACTTGTGATTTAGTAC-CAATTGTTTTCATTTTCTG
1 TTTAATCCT-GATCATTTTCATTT-TTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTG
3583713 ACTCATGA
63 ACTCATGA
* * * * * *
3583721 TTTAATCTCTG-TCATTTTCA-TTTCTAACCCATGGTTTAATC-CTAGTCATTTTCATTTTCTGA
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
*
3583783 C-CTATGG
64 CTC-ATGA
* * * * * * *
3583790 TTTAATCCTTG-TTATTTT-AATTTTTGACTCATGATTTAATCTGGGTCATTTTTATTTTCTGAC
1 TTTAATCC-TGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3583853 TTGTGA
65 TCATGA
* * * * ** ** **
3583859 TTTAATCTCGGCT-GTTTTCATTTTTTGACTCATGGTTTAAT-TCCCATTGTTTTCATTTCCTGA
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
*
3583922 CTCGTGA
64 CTCATGA
** * * * * ** * *
3583929 TTTAATTTTGGTCATTTTTATTTCTCTGACTTGTGGTTTAATCCTC-GTTGTCTTCATTTTCTGA
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGA
*
3583993 CTCATGG
64 CTCATGA
** * ** * *
3584000 TTTAATCCCAATCATTTTTCATTTTTTGACTGGTGGTTCCATCTGGGTCATTTTCATTTTTTGAG
1 TTTAATCCTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
** *
3584065 TTGTGG
65 TCATGA
* * * * * ** * * * *
3584071 TTTAATCCCTG-TCGTTTTAATTTTCTGACTCATGGTTTAATCCCAATCGTTTTTAGTTTTAGAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3584135 TTATGA
65 TCATGA
* * * * * * * * **
3584141 TTTAAT-TTAAGTTATTTTTATTTTCTGACTTGTGATTTAAT-TCTGTTTGTTTTCATTTTTTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
*
3584204 CT-AGTGG
64 CTCA-TGA
* * * *
3584211 TTTAATCCT-AGTCATTTTCATTTTCTGACTCGTGGTCTAATCTCGATCATTTTCACTTTTTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3584275 TTATGG
65 TCATGA
* * * * * * *
3584281 TTTAATCCCCG-TTATTTTACATTTTTTGGCTTGTGCTTTAATAC-CTGTCATTTTCATTTTCTG
1 TTTAAT-CCTGATCATTTT-CATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTG
*
3584344 A-TGAGTTG-
63 ACTCA--TGA
* * * **
3584352 TTTAATCCCT-ATCATTTTTATTTTTTGACTTGTGATTTAATC-CTAATCATTTTTCATTTTTTG
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCA-TTTTCATTTTTTG
3584415 ACTCATCG-
63 ACTCAT-GA
** * * *
3584423 TTTAATCCTGATCGCTTTCATTTTCTGACTCATGGTTTAATCTTACTGGT--TTTT-ATTTTTTC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATC-T-C-GGTCATTTTCATTTTTTG
* *
3584485 ACTCAAGG
63 ACTCATGA
* ** * * * * * * *
3584493 TTTAGTCCCAATCATTTTCATTTTCTAACT--TGCGTGTTAATTTCGATCGTTTTCAGTTTTTAA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTG-GT-TTAATCTCGGTCATTTTCATTTTTTGA
*
3584556 CTCATGT
64 CTCATGA
* * * ** * *
3584563 TTTAATCCT-AGCCATTTTCATTTTCTAACTCGTAATTTAAT-TAGGGTAATTTTCATTATCATT
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGG------TCATTTTCA--
*
3584626 TTTGTTTTCTGACTCATGG
56 --T-TTTT-TGACTCATGA
* * ** * * * *
3584645 TTTAATCTTGATCATTTTTTGGTTATTTTTATTTTTTGACTTATGATTTGATTTTGGTCATTTTC
1 TTTAATCCTGATC-----------ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTC
* * *
3584710 ATTTTTTGAGTTATGG
55 ATTTTTTGACTCATGA
* * * * * * * *
3584726 TTTAATTCTGGTCATTTTCATCTTTTGACTCGTGATTTGATTTCAGTCATTTTTATTTCTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGAC
**
3584791 TTGTGA
65 TCATGA
* * * * ** * * * * *
3584797 TTTAATGCT-AGTCATTTTCATTTTTGGAGTTGTCATTTAATTTCGATCGTTTTCATTTTCTAAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3584861 TCACGG
65 TCATGA
* * ** * ** **
3584867 TTTAAT-CTCGATCATTTTCACTTTTTGATTTATGGTTTAATCCCCATTGTTTTACATTTTTTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTT-CATTTTTTGA
** *
3584931 CTTGTGC
64 CTCATGA
* * * * * * ** * *
3584938 TTTAAACCT-AGTCATTTTCAGTTTTTGACACGTTGCTTAATCCCTATCA-TGT--TTTTTTGAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3584999 TCGTGA
65 TCATGA
* ** * * *
3585005 TTTAATCCTGGTTGTTTTCATTTTTTAACTCGTGGTATAATCGT-TGTCATTTTTCATTTTTTGA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TCGGTCA-TTTTCATTTTTTGA
3585069 C-C-TGTTA
64 CTCATG--A
* *** * * * ** *
3585076 TTTAATCC-AATTGCTTTCATTTTTTGACTCATGATTTAATC-CTGAT-AGTTTTCATTTCCTCA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCA-TTTTCATTTTTTGA
* *
3585138 CTCAAGG
64 CTCATGA
* * ***** * ** *
3585145 TTTAGTCC-CAGTCATTTTCATTTTTTGACTCACACATT--T-TC-ATTTTTTAACTCATGTTTT
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTT---TCATTTTTT
* *
3585205 AATCCTAGCCAT-T
62 GA--CT---CATGA
* * ** * * * * * *
3585218 TTTATTTTCTGA-C-TCGTGATTTAATT---T--TGG-TTATTTTCGTTATCATTTTTATTTTTT
1 TTTA-ATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCG--GTCATTTTCATTTTTT
3585275 GACT--TGTA
62 GACTCATG-A
** * * * * **
3585283 GTTTAAT-CTCGATTGTTTTCATTTTTTGACTCATGATTTAGTTTCAATCATTCTT-ATTTCTTT
1 -TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATT-TTCATTT-TTT
**
3585346 GACTTGTGA
62 GACTCATGA
* * *** ** ** ** * *
3585355 TTTAATACTGATCATTTTCATTTTTCTGACTCATGACCTAATCTCAATTGTTTTTGTTTTCTAAC
1 TTTAATCCTGATCATTTTCATTTTT-TGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3585420 CCATGG
65 TCATGA
* * * * * *
3585426 TTTAATCTTGGTCATTTTCATTTTCTAACCCATGGTTTAATCGT-GGTCATTTTCATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TCGGTCATTTTCATTTTTTGAC
3585490 TCATCG-
65 TCAT-GA
* * * * * ** *
3585496 TTTAAT-CTAAGTCATTTTTATTTTTTGACTAGTGGTTCAATC-CTAGTGGTTTTTATTTTTTGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
3585559 CTCATGA
64 CTCATGA
* ** * * * ** *
3585566 TTTAATCTTGATTGTTTTCATTTTCTAACTCATGGTTTAAT-TCCCATCATTTTCATTTTCTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGAC
* *
3585630 TCGTGG
65 TCATGA
* * * * * * ** * *
3585636 TTTAATCTTGATCGTTTTTCATTTTCTGATTGGTGGTTTCATCTCTATCATTTTCATTTTCTGAT
1 TTTAATCCTGATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3585701 TCATGG
65 TCATGA
* ** * * * * * * * * **
3585707 TTTGATCCTTG-TCGCTTTAATTTTCTAATTCGTGGTTTAGTC-CTAGTCGTTTTCAGTTTTAAA
1 TTTAATCC-TGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
3585770 CTCATGA
64 CTCATGA
* ** * * * * * * * * *
3585777 CTTAATTTTGGTCATTTTTATTTTCTGACTCATGATTTGATTTTGGTCATTTTCGTTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
*
3585842 -AGTGG
66 CA-TGA
* * * ** ** **
3585847 CTTAATCCT-AGTCATTTTCATTTTTTGACTCGTGATTTGAT-TCCAATTGTTTTTGTTTCTTTG
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTT-TTTG
3585910 ACTCATGA
63 ACTCATGA
* * ** * * * *
3585918 TTTAATGCTGGTCATTTTCATTTTTTGACTCGTTATTTAATTTCGATCACTTTCATTTTCTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
3585983 CATGA
66 CATGA
* * * * * ** *
3585988 TTTAATCTTTG-TCATTTTCACTTTTTGGCTTGTGGTTTAATAC-CTGTTGTTTTACATTTTCTG
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTT-CATTTTTTG
** *
3586051 ACTTGTGC
63 ACTCATGA
* * * * ** * * *
3586059 TTTAATCCCT-ATCATTTTCATTTTCTAACGCATTATTTAATCCCTGTCATTTTTATTTTTTGAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3586123 TCATGA
65 TCATGA
* ** * * * * ** *
3586129 TTTAATTCTGATTGTTTTCATTTTTTGACTCATAGTATAATC-CTGATTGTTTTTCATTTTCTGA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-G-GTCATTTTCATTTTTTGA
* *
3586193 CTTATCA
64 CTCATGA
* ** ** * ** *
3586200 TTTAATCCCGATCGCTTTCATTTTTTGACTCAAGGTTTAATC-CTAGTGGTTTTCATTTTTTCAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
* * *
3586264 TTAGGG
65 TCATGA
* * ** * * *
3586270 TTTAGTCCT-AGTCATTTTCATTTTCTGACTTATGCTTTAAT-TCTAGTCATTTTCA---TTTAA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
3586330 CTCAT-A
64 CTCATGA
* * * **** * *
3586336 TTTTAATCTTGGTCATTTTCATTTTCTGACTCACAATTTAAT-TCTAGTAATTTTCATTATCGTT
1 -TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTC---AT--TT
** *
3586400 TTTGTTTTTTAACTTGTGG
59 TTTG-------ACTCATGA
* * * * * * * * * *
3586419 TTTAAT-CTCAATCATTTTCATTTTCTGACTCATGATTTAATTTTGATCATTTTTATTTCTGTGG
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
*
3586483 TTCATGA
64 CTCATGA
* * * * * * * *
3586490 TTTAATAGC-GGTCATTTTCATTTTCTTG-CTCATGATTTAATCTTGGTCATTTTCAGTTTCTAA
1 TTTAAT-CCTGATCATTTTCATTTT-TTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3586553 CCCATGG
64 CTCATGA
* * * ** * *
3586560 TTTAATCCAG-TCATTTTCATTTTTTGACCCATGGTTTAATCTAAGTCATTTTTATTTTCTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
3586624 CATGA
66 CATGA
* ** *
3586629 TTTAAT-CTCGATCATTTTCATTTTTTGACTCATGGTTTAAT-TCCCATCATTTTCATTTTCTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
*
3586692 CTCATGG
64 CTCATGA
* * * * * * * ** ** *
3586699 TTTAATCCTGGTTATTTTTATTTCTCTAAGTCGTGGTTTAATCCCCATTGTCTTCATTTTTTGAT
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCA---TTT--T
*
3586764 TCTGACTCATGG
60 T-TGACTCATGA
* * * * * * * ** ** * *
3586776 TTTAATTCTGGTCATTTTTATTTCTCTAATTCGTGGTTTAATCCCCATTGTCTTCATTTTCTGAC
1 TTTAATCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3586841 TCATGG
65 TCATGA
* * * * * * * * *
3586847 TTTAATCCTAATCGTTTTTCATTTTCTGATTGGTAGTTTCATCTCGATCATTTTCATTTTCTGAC
1 TTTAATCCTGATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3586912 TCGTTG-
65 TC-ATGA
* ** * *
3586918 TTTAATTCCT-AT-AGTTTTAATTTTTTGACTTATGG-TTACTCTCGATCATTTT--TTGTTTTA
1 TTTAA-TCCTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATT-TTTT-
*
3586978 GACTTATGA
62 GACTCATGA
* * * * * * * * *
3586987 TTTAAT-TTCAGCCATTTTTATTTTCTGACTCGTGATTTGATTTTGGTCATTTTCATTTTTTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3587051 T-AGTGG
65 TCA-TGA
* * * * * *
3587057 TTTAAT-CTGATCATTTTCATTTTTTGACTCGTTGCTTAATTTTGATCATTTTTATTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
***
3587121 TGCGA
66 CATGA
* * * * ** **
3587126 TTTAAT-CTCAATCATTTTCACTTTTTGACTTGTGGTTTAATCCCTATTGTTTTACATTTTTTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTT-CATTTTTTGA
*
3587190 CTCATGC
64 CTCATGA
* * * * * ** * *
3587197 TTTAATCCCGATCGTTTTCATTTTTCGACACGTTGTTTAATGC-CTATCTTTTTTATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGAC
**
3587261 TTGTGA
65 TCATGA
* * * *
3587267 TTTAATCCCGATCATTTTCATTTTTTGACTTGTGGTATAATCTCGATCATTTTTCATTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCA-TTTTCATTTTTTGAC
3587332 TCATCG-
65 TCAT-GA
* ** * * * ** * * * *
3587338 TTTAATCCCGATCGCTTTCATTTTCTAACTCATGGTTTAATC-CTGGTGGTTTT--TATTCTCAT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
*
3587400 TTAGTG-
65 TCA-TGA
* ** * * * ** * *
3587406 TTTAGTCCCAATCGTTTTTATTTTCTGACTCGTACTTTAAT-TCCAGT--TGTTTCATTTTTTAA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCAT-TTTCATTTTTTGA
*
3587468 CTCATGT
64 CTCATGA
* * * ** * *
3587475 TTTAATCTTGATCATTTTAATTTTTTGACTCATAATTTAATTATGGTAGTTTTCATTATCATTTT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTCG--G---------TCATTTT
* * *
3587540 CATTTTCTGACTCGTGG
54 CATTTTTTGACTCATGA
* * * * * * * ** * ** *
3587557 TTTAATCTTGATCGTTTTCATTTTCTAACTCATGATTTAATTTCCATCATTTTTATTTCTCCGGC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGAC
**
3587622 TTGTGA
65 TCATGA
* * * * ** * * *** * * *
3587628 TTTAAT-ATCGATCGTTTTCATTTTCTGATTTATGATTTATTCTTAATCGTTTTCATTTTCTAAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3587692 CCATGG
65 TCATGA
* * * * * * *
3587698 TTTAAT-CTCGGTCATTTTCATTTTCTAACCCATGGTTTAAT-TCAGGTCATTTTTATTTTCTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
3587761 CTCATGA
64 CTCATGA
** * * * *
3587768 TTTAATTGTGGTCATTTTTATTTTTTGATTCGTGATTTAATCTCGGTCATTTTCATTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
* *
3587833 CGTGG
66 CATGA
* * * * * *
3587838 CTTAATTCC-CATCATTTTCATTTTTTGACTCGTGATTTAATTTTGGTCATTTTTATTTCTTTGA
1 TTTAA-TCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
** *
3587902 CTTGTGG
64 CTCATGA
* ** * * * ** * * *
3587909 TTTAATCTCCG-TTGTCTTCATTTTCTAACTCAAGGTTAAAT-T-GTGATCGTTTTTCATTTTCT
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCG-G-TC-ATTTTCATTTTTT
* *
3587971 GGCT-AGTGG
62 GACTCA-TGA
* * * ** * ***
3587980 TTTCAT-TTCGATCATTTTCATTTTCTGACTCGTGGTTTAATCTTTGTCATTTTAATTTTCCAAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3588044 TCAAGG
65 TCATGA
* * * * * * ** *
3588050 TTTAATCC-CAGTCATTTTCAGTTTTAGACTTGTGATTTAATTTCGACCATTTTTATTTTTTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
**
3588114 TTGTGA
65 TCATGA
* * * * * * *
3588120 TTTGAT-TTCGGTCGTTTTCATTTTTTCACTAC-TGGTTTAATCTCGATCATTTTCATGTTTTGA
1 TTTAATCCT-GATCATTTTCATTTTTTGACT-CGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
**
3588183 CTTGTGA
64 CTCATGA
** * * * * * * **
3588190 TTCGAT-TTCGGTCATTTTTATTTCTTTGATTTGTGATTTAATGC-CAATCATTTTCATTTTTTG
1 TTTAATCCT-GATCATTTTCATTT-TTTGACTCGTGGTTTAAT-CTCGGTCATTTTCATTTTTTG
* *
3588253 ACTCGTTA
63 ACTCATGA
* * * * * * * * *
3588261 TTTAAT-TTAAGTCGTTTTCATTTTTTTGATTCGCGATTTAATCTCAGTTATTTTCACTTTTTGA
1 TTTAATCCTGA-TCATTTTCA-TTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
3588325 CT--TG-
64 CTCATGA
* * * * * * ** *
3588329 --TAGT--T--TAATTTTCATTTTTTGACTTGTAGTTTAATCCCTGTTGTTTTACACTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTT-CATTTTTTGAC
*
3588388 T-AGTGC
65 TCA-TGA
* * * * * * *
3588394 TTTAATCCCTG-TCCTTTTCATTTTTTAACGCATTGTTTAATC-CCGTCATTGTTTATTTTTTGA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATT-TTCATTTTTTGA
*
3588457 CTCGTGA
64 CTCATGA
* * * ** * * * *
3588464 TTTAATCC-CAGTCATTTTCATTTTTTAACTTGTGGCATAATCCCAGTCATTTTTTATTTTTCGA
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCA-TTTTCATTTTTTGA
* *
3588528 CTCGTCAA
64 CTCAT-GA
* * * * * *
3588536 TTTAAATCTTGGA-C--TTTCATTTTCCTGACTCGTGCCTTGTAAATTTCGATCAATTTTTTTAT
1 TTT-AATCCT-GATCATTTTCATTTT-TTGACTCGTG-GTT-T-AATCTCGGTC-A--TTTTCA-
* *
3588598 TTTTTTGACTCGGTCA
56 TTTTTTGACTC-ATGA
* * * * *
3588614 TTTAATCTCAGA-CTTTTTCATTTTTTGACTCGTGCTTTTAATTTCAGTCATTTTCATTTTTTGA
1 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTG-GTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3588678 CTCGTAA
64 CTCATGA
* * * * * *
3588685 TTTAATTCCTGTAATTTTCATTATTGTTTTCATTTTCTAACCCTTGGTTTAATCTTGATCATTTT
1 TTTAA-TCCTG--A---TC---A---TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTT
* *
3588750 CATTTTCTGACTCGTGA
54 CATTTTTTGACTCATGA
* * * *** * **
3588767 TTTAATCTTGGTCGTTTTCATTTTCAAAC-CTATGGTTTAATC-CTGGTTGTTTTCATTTTTTGA
1 TTTAATCCTGATCATTTTCATTTTTTGACTC-GTGGTTTAATCTC-GGTCATTTTCATTTTTTGA
* *
3588830 CCCATGG
64 CTCATGA
* * * * * ** * *
3588837 TTTAAT-CTAGGTCCTTTTTATTTTCTGACTCATGGTTTAATCTCAATCGTTTTTATTTTTCT-A
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTT-TGA
* **
3588900 ATTGTGA
64 CTCATGA
* * * ** * *
3588907 TTTAATCTTGATCATTTTGATTTTTTTGACTCGTGATTTAAT-TCCCATCATTTTCATTTTCTAA
1 TTTAATCCTGATCATTTTCA-TTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGA
*
3588971 CTCGTGA
64 CTCATGA
* ** * * *
3588978 TTTAATTCC-GGTCATTTTTGTTTCTCTGACTCGTGGTTTAAT-TC--CCATTGTCGTCATTTTC
1 TTTAA-TCCTGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTCATT-T--TCATTTTT
*
3589039 TAACTCATGA
61 TGACTCATGA
** * * * * *
3589049 TTTAATCCCAATCTTTTTTCATTTTTTGAC-CAGTGGTTTCATCTCGATCGTTTTCATTTTCTGA
1 TTTAATCCTGATC-ATTTTCATTTTTTGACTC-GTGGTTTAATCTCGGTCATTTTCATTTTTTGA
* *
3589113 CTCGTGG
64 CTCATGA
* * * * * * * * * *
3589120 TTTAAACC-CAGTCATTTTAAGTTTTAGACTCATGATTTAATTTTGGTCATTTTTATTTTTTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3589184 TCATGA
65 TCATGA
* ** *** * * * * *
3589190 TTTGATTCC-GATTGTTTTTGCTTTTTGACTAGTGGTTTAATCCCTGTTATCTTCATTTTTTGAC
1 TTT-AATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3589254 TCATGG
65 TCATGA
** * * * * * *
3589260 TTTAATCCCAACCATTTCTTATTTTTTGACTAGTGGTTTCATTTCGGTCGTTTTCATTTTTT-AC
1 TTTAATCCTGATCATTT-TCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA-
* *
3589324 CTCGTGG
64 CTCATGA
* * * * * * * * * * * *
3589331 TTTAGTCCCT-ATCGTTTTAATTTTCTAACTCATGGCTTAATCCCTGTCATTTTTAGTTTTAGAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3589395 TCATGA
65 TCATGA
* ** * * *** * * * * **
3589401 TATAATTTTGGTCATTTTTATTTTCAAACTCGTGATTTGAT-TCCAGCCATTTTTGTTTTTTGAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-CGGTCATTTTCATTTTTTGAC
*
3589465 T-AGTGG
65 TCA-TGA
* ** * * * * * *
3589471 TTTAATCCTGGTCATTTTC-TTTTTCTGACTTATGATTTGATTTCGATCGTTTTAATTTCTTTGA
1 TTTAATCCTGATCATTTTCATTTTT-TGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
**
3589535 CTTGTGA
64 CTCATGA
** * * *
3589542 TTTAATGCCTG-TCATTTTCATTTTTTGACTCGTCATTTAATTTCAGTCATTTTCATTTTCTGAC
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
** *
3589606 TTGTGG
65 TCATGA
* * * ** * **
3589612 TTTAATCTTGGTC-TTTTCACTTTTTGACTTATGGTTTAATCCCTATTC-TTTTACATTTTTTGA
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTT-CATTTTTTGA
* *
3589675 CTCGTGT
64 CTCATGA
* ** * * *
3589682 TTTAATCCCTG-TCATTTTCATTTTTTGA-TGCATTATTTAATCCCTGTCATTTTTATTTTTTGA
1 TTTAAT-CCTGATCATTTTCATTTTTTGACT-CGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
** *
3589745 CTTGTTA
64 CTCATGA
* * * ** * ** ** **
3589752 TTTAATTCT-AGTCATTTTTTATTTTTTGACTTGTGGTAGAATCCCAATTGTTTTTCATTTCCTG
1 TTTAATCCTGA-TCA-TTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTG
3589816 ACTCATCG-
63 ACTCAT-GA
* ** * ** ** * *
3589824 TTTAATCCCGATCGCTTTCATTTTCTGACTTATGGTTTAATC-CTGGTGGTTTTCATTTTCTCAC
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTGAC
* *
3589888 TCAGGG
65 TCATGA
* ** * * ** * * * *
3589894 TTTAGTCCCAATCATTTTCATTTTCTGACTCATACTTTAATTTTGGTCATTTTCATTTTTTAAAT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
* *
3589959 -AGCGT
66 CA-TGA
* * * ** * **
3589964 TTTAATCTTGGTCATTTTCATGTTTTGACTCGTAATATAATTTTGATAATATTCATTATCATTTT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCG-----T--GGTT--TAAT-CTC--GGTCATTTT
* * *
3590029 CGTTTTCTGACTCATGG
54 CATTTTTTGACTCATGA
* * ** * * * * * * * * *
3590046 TTTAATAAC-AATCGCTTTCATTTTCTAACTCATGATTTAATTTCAGTCATTTTTATTTCTCTGG
1 TTTAAT-CCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTT-TTTGA
**
3590110 CTTGTGA
64 CTCATGA
* * * * * * *
3590117 TTTAAT-ATCGATCATTTTCATTTTCTGACTTGTGATTTAATCTAGGTCATTTTCATTTTCTAAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
* *
3590181 CCATGG
65 TCATGA
* * ** * *
3590187 TTTAATCCT-ATTCATTTTCATTTTTTGACCCATGGTTTAATCTCGACCATTTTTATTTTCT-AT
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA-
** *
3590250 CTTGTGG
64 CTCATGA
* * * * * * * * ** *
3590257 TTTTATCTTGGTCACTTTT-ATCTTCTAACTCGTGATTTAATCTTGGTTGTTTTCATTTTCTGAC
1 TTTAATCCTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
*
3590321 -CATGG
65 TCATGA
* * * * * * *
3590326 TTTAATTCT-AGTCATTTTTATTTCTCTGATTGGTGGTTTAATCCTATTGTCTTCATCGTTTTTC
1 TTTAATCCTGA-TCATTTTCATTT-TTTGACTCGTGGTTTAAT-C--TCG--GTCA----TTTTC
* * ** *
3590390 ATTTTCTAACTGGTGG
55 ATTTTTTGACTCATGA
* * * * * ** * *
3590406 TTTCAT-CTAGGTTATTTTCATTTTCTGACTCGTGGTTTAATCCCTATCATTTTAATTTTTGGAC
1 TTTAATCCT-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3590470 TCATTG-
65 TCA-TGA
* ** * * * * *
3590476 TTT-ATCCT-AGTCATTTTCAATTTTAAAATCGTGATTTAATTTTGGTAATTTTCATTTTTTGAC
1 TTTAATCCTGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGAC
3590539 T-AGTGA
65 TCA-TGA
* * * * *
3590545 TTTGATTCCAG-TCATTCTCGATTTTTT-ACTAGTGGTTTAAT-TCTGGTAATTTTCATTTTTTG
1 TTT-AATCCTGATCATTTTC-ATTTTTTGACTCGTGGTTTAATCTC-GGTCATTTTCATTTTTTG
*
3590607 ACTCATCA
63 ACTCATGA
* * * * * * * *
3590615 TTTAATTCTGGTCATTTTTATTTTCTGACTCATAGTTTAATCTTGGTCATTTTCACTTTTTGACT
1 TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
** *
3590680 TGTGG
66 CATGA
** * * ** * *
3590685 TTTAATCCATG-TTGTTTTACATTTTCTGACTCATACTTTAATCCCTGTCATTTTCATTTTTTGA
1 TTTAATCC-TGATCATTTT-CATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGA
3590749 TGTGTTATTT
Statistics
Matches: 26302, Mismatches: 7165, Indels: 4529
0.69 0.19 0.12
Matches are distributed among these distances:
60 1 0.00
61 29 0.00
62 76 0.00
63 45 0.00
64 108 0.00
65 83 0.00
66 147 0.01
67 464 0.02
68 557 0.02
69 2499 0.10
70 11699 0.44
71 7141 0.27
72 875 0.03
73 147 0.01
74 72 0.00
75 86 0.00
76 87 0.00
77 138 0.01
78 76 0.00
79 115 0.00
80 113 0.00
81 374 0.01
82 1030 0.04
83 199 0.01
84 25 0.00
85 11 0.00
86 13 0.00
87 17 0.00
88 13 0.00
89 8 0.00
90 8 0.00
91 9 0.00
93 28 0.00
94 6 0.00
96 3 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (70 bp):
TTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCATTTTCATTTTTTGACT
CATGA
Found at i:3562561 original size:141 final size:141
Alignment explanation
Indices: 3562416--3562784 Score: 383
Period size: 141 Copynumber: 2.6 Consensus size: 141
3562406 TTTATTTTCT
* * *
3562416 GACTCATGGTTTAATCCTGATCATTTTTATTTTTTGACTGGTGGTTTCATCTCGGTCGTTTTCAT
1 GACTCATGATTTAATCCTG-TCATTTTTATTTTTTGACTCGTGGTTTAAT-TCGGTCGTTTTCAT
* * *
3562481 TTTTTGACTCGTGGTTTAATCCCT-ATCGTTTTAATTTTCTAACTTGT-AGTTTAATTTC-AGTC
64 TTTTTGACTAGTGGTTTAATCCCTGATCATTTTAATTTTCTAACTCGTGA-TTTAATTTCGA-TC
3562543 ATTTTTCA-GT-TTTA
127 ATTTTT-ATGTCTTTA
** * * *
3562557 GACTCATGATTTAATTTTCGTCATTTTTATTTTTTGACTTGTGATTTAATTCCGATCGTTTTCAT
1 GACTCATGATTTAATCCT-GTCATTTTTATTTTTTGACTCGTGGTTTAATT-CGGTCGTTTTCAT
* * * * * *
3562622 TTTTTGACTAGTGATTTAAT-CCTGGTCATTTTCATTTTTTGACTCGTGATTTAGTTTCGATCAT
64 TTTTTGACTAGTGGTTTAATCCCTGATCATTTTAATTTTCTAACTCGTGATTTAATTTCGATCAT
*
3562686 TTTTATTTCTTTA
129 TTTTATGTCTTTA
* * * * *
3562699 -ACTCATGATTTTAATGCCAGTCATTTTCATTTTTTGACTCGTTGTTTAATTTTGGTCATTTTCA
1 GACTCATGA-TTTAAT-CCTGTCATTTTTATTTTTTGACTCGTGGTTTAA-TTCGGTCGTTTTCA
*
3562763 TTTTTTGACTTGTGGTTTAATC
63 TTTTTTGACTAGTGGTTTAATC
3562785 TTAGTCATTT
Statistics
Matches: 188, Mismatches: 29, Indels: 20
0.79 0.12 0.08
Matches are distributed among these distances:
140 5 0.03
141 114 0.61
142 67 0.36
143 2 0.01
ACGTcount: A:0.18, C:0.14, G:0.14, T:0.53
Consensus pattern (141 bp):
GACTCATGATTTAATCCTGTCATTTTTATTTTTTGACTCGTGGTTTAATTCGGTCGTTTTCATTT
TTTGACTAGTGGTTTAATCCCTGATCATTTTAATTTTCTAACTCGTGATTTAATTTCGATCATTT
TTATGTCTTTA
Found at i:3562921 original size:139 final size:139
Alignment explanation
Indices: 3562615--3563013 Score: 362
Period size: 139 Copynumber: 2.8 Consensus size: 139
3562605 ATTCCGATCG
* * * * * * * **
3562615 TTTTCATTTTTTGACT-AGTGATTTAATCCTGGTCATTTTCATTTTTTGACTCGTGATTTAGTTT
1 TTTTCATTTTGTGACTCA-TGATTTAATCTTAGTCATTTTCAGTTTTTGACTCGTGGTATAATCC
* * * * * * *
3562679 CGATCATTTT-TATTTCTTTAACTCATGATTTTAATGCC-AGTCATTTTCATTTTTTGAC-TCGT
65 CCATCATTTTACATTT-TTTGACTCATCA-TTTAAT-CCTAATCATTTTCATTTTCTAACAT-G-
*
3562741 TGTTTAAT-TTTGGTCA
125 T-TTTAATCTCT-GTCA
* ** * * * *
3562757 TTTTCATTTTTTGACTTGTGGTTTAATCTTAGTCATTTTCAGTTTTTGACTTGTGGTTTTATCCC
1 TTTTCATTTTGTGACTCATGATTTAATCTTAGTCATTTTCAGTTTTTGACTCGTGGTATAATCCC
** * *
3562822 CATTGTTTTACATTTTTTGACTCGTGC-TTTAATCCCT-ATCGTTTTCATTTTCTAACATGTTTT
66 CATCATTTTACATTTTTTGACTCAT-CATTTAAT-CCTAATCATTTTCATTTTCTAACATGTTTT
3562885 AATCTCTGTCA
129 AATCTCTGTCA
* * *
3562896 TTTTTATTTTGTGACTCATGATTTAATCTTGGTCATTTTCATTTTTTGACTCGTGGTATAATCCC
1 TTTTCATTTTGTGACTCATGATTTAATCTTAGTCATTTTCAGTTTTTGACTCGTGGTATAATCCC
* *
3562961 GATCATTTTTCATTTTTTGACTCATCATTTAATCCTAATCATTTTCATTTTCT
66 CATCATTTTACATTTTTTGACTCATCATTTAATCCTAATCATTTTCATTTTCT
3563014 GACTCGTTAT
Statistics
Matches: 209, Mismatches: 40, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
138 4 0.02
139 106 0.51
140 3 0.01
141 24 0.11
142 68 0.33
143 4 0.02
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.54
Consensus pattern (139 bp):
TTTTCATTTTGTGACTCATGATTTAATCTTAGTCATTTTCAGTTTTTGACTCGTGGTATAATCCC
CATCATTTTACATTTTTTGACTCATCATTTAATCCTAATCATTTTCATTTTCTAACATGTTTTAA
TCTCTGTCA
Found at i:3563562 original size:69 final size:65
Alignment explanation
Indices: 3563475--3563686 Score: 203
Period size: 69 Copynumber: 3.1 Consensus size: 65
3563465 ATTGCTTTCA
* ** *
3563475 TTTTCTGACTCATTGTTTAATTCCCATCATTTTCATTTTCTAACTCATGATTTAATTCTGGTAAT
1 TTTTTTGACTCATTGTTTAA-TCCCATTGTTTTCATTTT-TAACTCATGATTTAATTCTGGTCAT
3563540 TT
64 TT
* * * *
3563542 TTTTCATTGACTCATGGTTTAATCCC-TGTGTTCTTCATTTTTTGACTCATGGTTTAATCCCT-G
1 TTTT--TTGACTCATTGTTTAATCCCAT-TGTT-TTCA-TTTTTAACTCATGATTTAAT-TCTGG
3563605 TCATTT
60 TCATTT
* *
3563611 TAATTTTTGACTCATTGTTTAATCCCAGTTGTTTTCAGTTTTAGACTCATGATTTAATTTTGGTC
1 T--TTTTTGACTCATTGTTTAATCCCA-TTGTTTTCATTTTTA-ACTCATGATTTAATTCTGGTC
3563676 ATTT
62 ATTT
3563680 TTATTTT
1 TT-TTTT
3563687 CGAACTCGTG
Statistics
Matches: 118, Mismatches: 14, Indels: 25
0.75 0.09 0.16
Matches are distributed among these distances:
67 6 0.05
68 15 0.13
69 83 0.70
70 10 0.08
71 4 0.03
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.53
Consensus pattern (65 bp):
TTTTTTGACTCATTGTTTAATCCCATTGTTTTCATTTTTAACTCATGATTTAATTCTGGTCATTT
Found at i:3563866 original size:17 final size:16
Alignment explanation
Indices: 3563844--3563901 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 16
3563834 AGTCGTTTAA
3563844 TTTTGATCATTTTCATT
1 TTTTGATCATTTTCA-T
*
3563861 TTTTGACTCATGGTTT-AA
1 TTTTGA-TCAT--TTTCAT
3563879 TTTTGATCATTTTCACT
1 TTTTGATCATTTTCA-T
3563896 TTTTGA
1 TTTTGA
3563902 CTTATGGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
15 3 0.09
16 1 0.03
17 16 0.47
18 10 0.29
19 1 0.03
20 3 0.09
ACGTcount: A:0.19, C:0.12, G:0.10, T:0.59
Consensus pattern (16 bp):
TTTTGATCATTTTCAT
Found at i:3564456 original size:71 final size:69
Alignment explanation
Indices: 3564289--3564488 Score: 188
Period size: 71 Copynumber: 2.8 Consensus size: 69
3564279 TCATTGTCGT
** * *
3564289 TTTCATTTTCTGACTTGTGGTTTAATTTCGATCGTTTTCATTTTCTGACTCATGGTTTAATCTTG
1 TTTCATTTT-TGACTCATGGTTTAATCTCGATCGTTTTCATTTTCTGACTCATGGTTTAATCTCG
* *
3564354 GTCAT
65 ATCAC
* ** * * *
3564359 TTTCATTTCTTGACTCATAGCATAATCTCGGTCGCTTTTCTTTTTCTGACTCATTGTTTAATCTC
1 TTTCATTT-TTGACTCATGGTTTAATCTCGATCG-TTTTCATTTTCTGACTCATGGTTTAATCTC
*
3564424 GATCGC
64 GATCAC
* * *
3564430 TTTCACTTTTTGACTCATGGTTTAATC-CTAGTGGTTTTCATTTTCTCG-CTCAGGGTTTA
1 TTTCA-TTTTTGACTCATGGTTTAATCTCGA-TCGTTTTCATTTTCT-GACTCATGGTTTA
3564489 GTCCTAGTCA
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
70 46 0.45
71 54 0.52
72 3 0.03
ACGTcount: A:0.16, C:0.20, G:0.15, T:0.49
Consensus pattern (69 bp):
TTTCATTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTCTGACTCATGGTTTAATCTCGA
TCAC
Found at i:3565271 original size:142 final size:141
Alignment explanation
Indices: 3564991--3565315 Score: 336
Period size: 142 Copynumber: 2.3 Consensus size: 141
3564981 TCGTTTTCAG
* ** *
3564991 TTTTAGACTCGTGATTTAATTTTGGTCATTTTTATTTTCTAACTCATGATTTAATTCTGATCATT
1 TTTTTGACTCGTGATTTAATCCTGGTCATTTTCATTTTCTAACTCATGATTTAATTCTGATCATT
* * * * ** **
3565056 TTTATTTTTTGACTAGTGGTTTAATCCCAATAATTTTCATTTTTTGATTTGTGATTTAGTTTCGG
66 TTTAGTTTTTGACTAGAGGTTTAATCCCAATAATTTTCATTTTTGGATTTGTGATTTAATCCCCA
* *
3565121 TTGTTTTTA-T
131 TTGCTTTTACA
* * * * *
3565131 TTCTTTGACTCGTGATTTAATGCTGGTCATTTTCATTTTTTGACTCATCG-TTTAATTTTTGGTC
1 TT-TTTGACTCGTGATTTAATCCTGGTCATTTTCATTTTCTAACTCAT-GATTTAA-TTCTGATC
* * * * *
3565195 ATTTTTAGTTTTTGACTTGAGGTTTAATCTCAGTCATTTTCACTTTTTGGACTTTG-GGTTTAAT
63 ATTTTTAGTTTTTGACTAGAGGTTTAATCCCAATAATTTTCA-TTTTTGGA-TTTGTGATTTAAT
3565259 CCCCATT-CTTTTACA
126 CCCCATTGCTTTTACA
*
3565274 TTTTTGACTCGTGCTTTAATCCCT-GTCATTTTCATTTTCTAA
1 TTTTTGACTCGTGATTTAAT-CCTGGTCATTTTCATTTTCTAA
3565316 TGCGTTGTTT
Statistics
Matches: 151, Mismatches: 27, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
140 2 0.01
141 44 0.29
142 81 0.54
143 20 0.13
144 4 0.03
ACGTcount: A:0.19, C:0.14, G:0.13, T:0.54
Consensus pattern (141 bp):
TTTTTGACTCGTGATTTAATCCTGGTCATTTTCATTTTCTAACTCATGATTTAATTCTGATCATT
TTTAGTTTTTGACTAGAGGTTTAATCCCAATAATTTTCATTTTTGGATTTGTGATTTAATCCCCA
TTGCTTTTACA
Found at i:3565970 original size:104 final size:103
Alignment explanation
Indices: 3565594--3566067 Score: 287
Period size: 106 Copynumber: 4.5 Consensus size: 103
3565584 TTTTCATTAT
* * * * ** *
3565594 ATTTTCATTTTCTAACTTGTGGTTTAATCTCGATCATTTTCATTTTCTGACTCGTGATTTAATTT
1 ATTTTCATTTTCTGACTCGTGATTTAATCTAG-TCATTTT-ATTTTCTGACTCACGATTTAATCT
* *** * * * * * * *
3565659 TGATAATTTTTATTTCTTTGACTTGTGATTTAATAC-TGATT
64 TGGTTGCTTTCATTT-TCTAACTCGTGGTTTAAT-CTTCATC
* * * * *
3565700 GTTTTCATCTTT-TGACTTGTGATTTAATCTTGATCATTTTCATTTTCTAACCCACGATTTAATC
1 ATTTTCAT-TTTCTGACTCGTGATTTAATCTAG-TCATTTT-ATTTTCTGACTCACGATTTAATC
* * * * **
3565764 TTGGTTGTTTTCATTTTCTGACCCATGGTTTAATCTTGGTC
63 TTGGTTGCTTTCATTTTCTAACTCGTGGTTTAATCTTCATC
* * * * * * ** *
3565805 GTTTTTATTTTCTAACTCATGATTTAATTTAAGTCATTTTTATTTT-TGGCTCGTGACTTAATCT
1 ATTTTCATTTTCTGACTCGTGATTTAATCT-AGTCA-TTTTATTTTCTGACTCACGATTTAATCT
3565869 TGGTTGCTTTCATTTTCTAACTCGTGGTTTAAT-TTCATC
64 TGGTTGCTTTCATTTTCTAACTCGTGGTTTAATCTTCATC
3565908 ATTTTCATTTTCTGACTCGTGATTTAATCCTAGTCATTTTATTTCTCTGACTCAC-AGTTTAATC
1 ATTTTCATTTTCTGACTCGTGATTTAAT-CTAGTCATTTTATTT-TCTGACTCACGA-TTTAATC
**** * * *
3565972 CCCATTGTCTTT-ATTATCTAACTCGTGGTTTAATCTTGATTG
63 TTGGTTG-CTTTCATTTTCTAACTCGTGGTTTAATCTTCA-TC
* * * * * *
3566014 TTTTTCTTTTTCTGACTGGT-AGTTTTATCTCGATTATTTTCATTTTCTGACTCA
1 ATTTTCATTTTCTGACTCGTGA-TTTAATCTAG-TCATTTT-ATTTTCTGACTCA
3566068 TGGTATAATC
Statistics
Matches: 293, Mismatches: 60, Indels: 30
0.77 0.16 0.08
Matches are distributed among these distances:
102 8 0.03
103 35 0.12
104 81 0.28
105 56 0.19
106 106 0.36
107 7 0.02
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.52
Consensus pattern (103 bp):
ATTTTCATTTTCTGACTCGTGATTTAATCTAGTCATTTTATTTTCTGACTCACGATTTAATCTTG
GTTGCTTTCATTTTCTAACTCGTGGTTTAATCTTCATC
Found at i:3566265 original size:103 final size:102
Alignment explanation
Indices: 3566120--3566481 Score: 290
Period size: 103 Copynumber: 3.5 Consensus size: 102
3566110 TCCTCGTCGG
* *
3566120 TTTCAGTTTTAGATTCGTGATTTAATTTTGGTCATTTTTATTTTTTGACTTGTGATTTAATTG-C
1 TTTCA-TTTT-GACTCGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGATTTAATTGTC
* *
3566184 CATCATTTTCATTTTCTGTCT-AGTAGTTTAAT-GTCGATCAT
64 AATCATTTTCATTTTCTGACTCA-TAGTTTAATGGTC-AT--T
* **
3566225 TTTCATTTTGACTCGTGATTTAGTTTCGGTCATTTTTATTTCTTTGACTCATGATTTAA-TGTCA
1 TTTCATTTTGACTCGTGATTTAATTTCGGTCATTTTTATTT-TTTGACTTGTGATTTAATTGTCA
* *
3566289 ATCATTTTCATTTTTTGACTCATCGTTTAATGGTCATT
65 ATCATTTTCATTTTCTGACTCATAGTTTAATGGTCATT
** * * * * * * **
3566327 TTTGTTTTATGACTCATGGTTTAATCTCGGTCATTTTCACTTTTTGACTTGTGGTTTAATCCTC-
1 TTTCATTT-TGACTCGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGATTTAATTGTCA
** * *
3566391 ATTGTTTTACATTTTCTAACTCAT-GCTTTAATCCTTGTCATT
65 ATCATTTT-CATTTTCTGACTCATAG-TTTAA---TGGTCATT
* * *
3566433 TTT-ATTTTTTGACTCATGATTTAA-TTCTGGTCGTTTTCATTTTTTGACT
1 TTTCA--TTTTGACTCGTGATTTAATTTC-GGTCATTTTTATTTTTTGACT
3566482 CATGTTATAA
Statistics
Matches: 211, Mismatches: 32, Indels: 27
0.78 0.12 0.10
Matches are distributed among these distances:
102 28 0.13
103 78 0.37
104 48 0.23
105 11 0.05
106 43 0.20
107 3 0.01
ACGTcount: A:0.19, C:0.14, G:0.13, T:0.54
Consensus pattern (102 bp):
TTTCATTTTGACTCGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGATTTAATTGTCAA
TCATTTTCATTTTCTGACTCATAGTTTAATGGTCATT
Found at i:3566317 original size:104 final size:104
Alignment explanation
Indices: 3566081--3566375 Score: 291
Period size: 103 Copynumber: 2.8 Consensus size: 104
3566071 TATAATCCTG
* * * *
3566081 TCATTTTAATTTTTTGACTCA-CGGTTTAATCCTCGTCGGTTTCAGTTTTAGATTCGTGATTTAA
1 TCATTTTCATTTTTTGACTCATC-GTTTAAT-GTCGTCAGTTTCAGTTTTAGACTCGTGATTTAA
* ** *
3566145 TTTTGGTCATTTTTATTTTTTGACTTGTGATTTAATTGCCA
64 TTTCGGTCATTTTTATTTTTTGACTCATGATTTAATTGCAA
* * * * *
3566186 TCATTTTCATTTTCTGTCT-AGTAGTTTAATGTCGATCATTTTCA-TTTT-GACTCGTGATTTAG
1 TCATTTTCATTTTTTGACTCA-TCGTTTAATGTCG-TCAGTTTCAGTTTTAGACTCGTGATTTAA
3566248 TTTCGGTCATTTTTATTTCTTTGACTCATGATTTAA-TGTCAA
64 TTTCGGTCATTTTTATTT-TTTGACTCATGATTTAATTG-CAA
** * *
3566290 TCATTTTCATTTTTTGACTCATCGTTTAATG--GTCA-TTTTTGTTTTATGACTCATGGTTTAAT
1 TCATTTTCATTTTTTGACTCATCGTTTAATGTCGTCAGTTTCAGTTTTA-GACTCGTGATTTAAT
* * *
3566352 CTCGGTCATTTTCACTTTTTGACT
65 TTCGGTCATTTTTATTTTTTGACT
3566376 TGTGGTTTAA
Statistics
Matches: 157, Mismatches: 24, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
100 3 0.02
101 7 0.04
102 8 0.05
103 57 0.36
104 51 0.32
105 31 0.20
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.53
Consensus pattern (104 bp):
TCATTTTCATTTTTTGACTCATCGTTTAATGTCGTCAGTTTCAGTTTTAGACTCGTGATTTAATT
TCGGTCATTTTTATTTTTTGACTCATGATTTAATTGCAA
Found at i:3566340 original size:32 final size:32
Alignment explanation
Indices: 3566290--3566375 Score: 93
Period size: 32 Copynumber: 2.6 Consensus size: 32
3566280 TTAATGTCAA
*
3566290 TCATTTTCATTTTTTGACTCATCGTTTAATGG
1 TCATTTTCATTTTATGACTCATCGTTTAATGG
** *
3566322 TCATTTTTGTTTTATGACTCATGGTTTAATCTCGG
1 TCATTTTCATTTTATGACTCATCGTTTAA--T-GG
3566357 TCATTTTCACTTTT-TGACT
1 TCATTTTCA-TTTTATGACT
3566376 TGTGGTTTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
32 25 0.57
34 1 0.02
35 14 0.32
36 4 0.09
ACGTcount: A:0.17, C:0.16, G:0.13, T:0.53
Consensus pattern (32 bp):
TCATTTTCATTTTATGACTCATCGTTTAATGG
Found at i:3566469 original size:71 final size:71
Alignment explanation
Indices: 3566394--3566528 Score: 159
Period size: 71 Copynumber: 1.9 Consensus size: 71
3566384 AATCCTCATT
* * *
3566394 GTTTTACATTTTCTAACTCATGCTT-TAAT-CCTTGTC-ATTTTTATTTTTTGACTCATGATTTA
1 GTTTT-CATTTTCTAACTCATG-TTATAATATC-GGTCGATTTTTATTTTCTGACTCATGATTTA
3566456 ATTCTGGTC
63 ATTCTGGTC
* * * *
3566465 GTTTTCATTTTTTGACTCATGTTATAATATCGGTCGCTTTTTATTTTCTGACTCATGTTTTAAT
1 GTTTTCATTTTCTAACTCATGTTATAATATCGGTCGATTTTTATTTTCTGACTCATGATTTAAT
3566529 CTTAATTGCT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
69 2 0.04
70 21 0.39
71 31 0.57
ACGTcount: A:0.19, C:0.16, G:0.11, T:0.54
Consensus pattern (71 bp):
GTTTTCATTTTCTAACTCATGTTATAATATCGGTCGATTTTTATTTTCTGACTCATGATTTAATT
CTGGTC
Found at i:3567028 original size:104 final size:104
Alignment explanation
Indices: 3566755--3567029 Score: 268
Period size: 104 Copynumber: 2.6 Consensus size: 104
3566745 TTAATTTCTT
** * * ** *
3566755 TCATTTTTATTTCTTTGACTTGTGATTTAATACTAATCGTTTTAATTTTCTGACTCATGATATAA
1 TCATTTTTATTT-TTTGACTCATAATTTAAT-CTCATCAATTTAATTTTCTGACTCATGATTTAA
* * * * *
3566820 TCTTGGTCTTTTTGATTTTTTAACCCATGGTTTAATCCCAT
64 TCTGGGTCTTTTTGATTTTCTAACCCATGGTATAAACCCAG
* * * * **
3566861 TCGTTTTCATTTTTTGAC-CTATAGTTTAATCTCAGTCAATTTAATTTTCTAACTTGTGATTTAA
1 TCATTTTTATTTTTTGACTC-ATAATTTAATCTCA-TCAATTTAATTTTCTGACTCATGATTTAA
* *
3566925 TC-GGGT-TGTTTTTATTTTCTAACTCATGGTATAAACCCAG
64 TCTGGGTCT-TTTTGATTTTCTAACCCATGGTATAAACCCAG
* * *
3566965 TCATTTTTATTTTTTGACTCATAATTTAATCTCGATCACTTTCATTTTCTGACTCATGGTTTAAT
1 TCATTTTTATTTTTTGACTCATAATTTAATCTC-ATCAATTTAATTTTCTGACTCATGATTTAAT
3567030 TTACATCATT
Statistics
Matches: 135, Mismatches: 29, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
103 1 0.01
104 84 0.62
105 40 0.30
106 10 0.07
ACGTcount: A:0.23, C:0.16, G:0.11, T:0.51
Consensus pattern (104 bp):
TCATTTTTATTTTTTGACTCATAATTTAATCTCATCAATTTAATTTTCTGACTCATGATTTAATC
TGGGTCTTTTTGATTTTCTAACCCATGGTATAAACCCAG
Found at i:3567183 original size:29 final size:30
Alignment explanation
Indices: 3567127--3567183 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
3567117 TTTTGACTCA
3567127 TGGTTTAATCCCGATCGATTTTCATTTTAG
1 TGGTTTAATCCCGATCGATTTTCATTTTAG
* *
3567157 TGGTTTCATCTCGATC-ATTTTCATTTT
1 TGGTTTAATCCCGATCGATTTTCATTTT
3567184 CTGACTTGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.51
Consensus pattern (30 bp):
TGGTTTAATCCCGATCGATTTTCATTTTAG
Found at i:3567485 original size:103 final size:102
Alignment explanation
Indices: 3567262--3567502 Score: 243
Period size: 103 Copynumber: 2.3 Consensus size: 102
3567252 TTTTAGACTA
* * ** **
3567262 GTGATTTAATTTTGGCCA-TTTTATTTTTTGACTTATGACTTAATTTTGGTTGTTTTCATTTTTT
1 GTGATTTAA-TTTGGTCATTTTTATTTTTTGACTCATGACTTAATGCTGGTCATTTTCATTTTTT
* * * *
3567326 GACTAGTAGTTTAATCTTGGTCATTTTTATTTTTTGACTC
65 GAC-A-TAGTTTAATCTTAGTCATTTTCATTTTCTAACTC
* * *
3567366 GTGATTCAGTTCTGGTCATTTTTATTTCTTTGACTCATGATTTAATGCTGGTCATTTTCATTTTT
1 GTGATTTAATT-TGGTCATTTTTATTT-TTTGACTCATGACTTAATGCTGGTCATTTTCATTTTT
* * *
3567431 TGAC-TCGTTTAATTTTAGTCATTTTCATTTTCTAACTT
64 TGACATAGTTTAATCTTAGTCATTTTCATTTTCTAACTC
* * *
3567469 GTGGTTTAATCTTGGTCATTTTCACTTTTTGACT
1 GTGATTTAAT-TTGGTCATTTTTATTTTTTGACT
3567503 TGTGGTTTTA
Statistics
Matches: 112, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
102 7 0.06
103 49 0.44
104 13 0.12
105 8 0.07
106 35 0.31
ACGTcount: A:0.18, C:0.12, G:0.14, T:0.56
Consensus pattern (102 bp):
GTGATTTAATTTGGTCATTTTTATTTTTTGACTCATGACTTAATGCTGGTCATTTTCATTTTTTG
ACATAGTTTAATCTTAGTCATTTTCATTTTCTAACTC
Found at i:3568006 original size:67 final size:67
Alignment explanation
Indices: 3567896--3568032 Score: 195
Period size: 67 Copynumber: 2.0 Consensus size: 67
3567886 TTTTTAGACT
** * *
3567896 TTTGACTTGTGATTTAATCTCGATTGTTTTCATTTTCTAACTTGCGATATAATTTTGATCATTTT
1 TTTGACTTGTGATTTAATCTCGATCATTTTCATTTTCTAACTTGCGATATAATCTCGATCATTTT
3567961 CA
66 CA
* * *
3567963 TTTGACTTGTGATTTAATAC-CGATCATTTTCATTTTCTGACTTGTGATTTAATCTCGATCATTT
1 TTTGACTTGTGATTTAAT-CTCGATCATTTTCATTTTCTAACTTGCGATATAATCTCGATCATTT
3568027 TCA
65 TCA
3568030 TTT
1 TTT
3568033 TCTAACCCAC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
67 61 0.98
68 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.12, T:0.52
Consensus pattern (67 bp):
TTTGACTTGTGATTTAATCTCGATCATTTTCATTTTCTAACTTGCGATATAATCTCGATCATTTT
CA
Found at i:3568753 original size:141 final size:140
Alignment explanation
Indices: 3568464--3568719 Score: 318
Period size: 141 Copynumber: 1.8 Consensus size: 140
3568454 TGTAGACTTG
* * * * * *
3568464 TGATTTAATTTTGGTCATTTTTATTTTTTGACTCGTGATTTAATTTCATCGTTTTTATTTTCTGA
1 TGATTTAATATCGATCATTTTCATTTTTTGACTCGTCATTTAATTCCATCGTTTTTATTTTCTGA
* * * * **
3568529 CTAGTGGTTTAATCCCAGTCATTTTCATTTTTTGACTCGTGATTTAGTTTTGGTCATTTCTATTT
66 CTAGTAGTTTAATCCCAGTCATTTTCACTATTTGACTCGTGATTTAATCCTGGTCATTTCTATTT
*
3568594 CTTTGACTCA
131 CTCTGACTCA
*
3568604 TGATTTAATATCGATCATTTTCATTTTTTGACTTGTCATTTAATTCCAGTCGTTTTTATTTTCTG
1 TGATTTAATATCGATCATTTTCATTTTTTGACTCGTCATTTAATTCCA-TCGTTTTTATTTTCTG
* * *
3568669 ACTCA-TAGTTTAATCTC-GATCATTTTCACTATTTGACTTGTGGTTTAATCC
65 ACT-AGTAGTTTAATCCCAG-TCATTTTCACTATTTGACTCGTGATTTAATCC
3568720 CTGTTGTTTT
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
140 42 0.43
141 54 0.56
142 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (140 bp):
TGATTTAATATCGATCATTTTCATTTTTTGACTCGTCATTTAATTCCATCGTTTTTATTTTCTGA
CTAGTAGTTTAATCCCAGTCATTTTCACTATTTGACTCGTGATTTAATCCTGGTCATTTCTATTT
CTCTGACTCA
Found at i:3569114 original size:82 final size:82
Alignment explanation
Indices: 3569007--3569166 Score: 196
Period size: 82 Copynumber: 2.0 Consensus size: 82
3568997 ATTTCAGTTG
** * * *
3569007 TTTTCATTTTTTAACTTGTGTTTTAATC-CTGGTCATTTTCATTTTTTGACTCATAATTTAATTT
1 TTTTCATTTTTTAACTCATGGTTTAATCTC-GATCATTTTCATTTTCTGACTCATAATTTAATTT
*
3569071 CGGTAATTTTTATTATCA
65 CGATAATTTTTATTATCA
* ** * *
3569089 TTTTCATTTTTTGACTCATGGTTTAATCTCGATTGTTTTCATTTTCTGCCTCATGATTTAATTTC
1 TTTTCATTTTTTAACTCATGGTTTAATCTCGATCATTTTCATTTTCTGACTCATAATTTAATTTC
*
3569154 GATCATTTTTATT
66 GATAATTTTTATT
3569167 TCTCTGGCTT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
82 64 0.98
83 1 0.02
ACGTcount: A:0.20, C:0.14, G:0.09, T:0.57
Consensus pattern (82 bp):
TTTTCATTTTTTAACTCATGGTTTAATCTCGATCATTTTCATTTTCTGACTCATAATTTAATTTC
GATAATTTTTATTATCA
Found at i:3569643 original size:19 final size:19
Alignment explanation
Indices: 3569619--3569681 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
3569609 CCCGATCATT
3569619 TTTAATTTTAGACTCATGA
1 TTTAATTTTAGACTCATGA
* *
3569638 TTTAATTTT-G-GTCAT-T
1 TTTAATTTTAGACTCATGA
*
3569654 TTTATTTTCTA-ACTCATGA
1 TTTAATTT-TAGACTCATGA
3569673 TTTAATTTT
1 TTTAATTTT
3569682 GATCATTTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 9
0.69 0.12 0.18
Matches are distributed among these distances:
16 7 0.21
17 5 0.15
18 6 0.18
19 16 0.47
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.57
Consensus pattern (19 bp):
TTTAATTTTAGACTCATGA
Found at i:3569733 original size:141 final size:141
Alignment explanation
Indices: 3569371--3569874 Score: 343
Period size: 141 Copynumber: 3.6 Consensus size: 141
3569361 TCTCGATCGC
* ** * * *
3569371 TTTCATTTTCTAACTCATGGTTTAATTCCCATCATTTTCATTTTTTGACTCGA-GATTTAATTTT
1 TTTCATTTTCTAACTCATCGTTTAATTCTGATCATTTTCAATTTTTGACTC-ATGATTTAATCTA
* * * * * * *
3569435 GATCATTTTTATTTCTCTGACTCGTGGTTTAATCCC---CATTGTCTTCATTTTTTGACTCATGG
65 GATCATTTTCATTT-TTTGACTCGTGATTTAATCCCAGTCATT-T-TTAATTCTTAGACTCATGA
**
3569497 TTTAATGCCAATCATT
127 TTTAATGCCTGTCA-T
* * * ** * * * * * *** *
3569513 TTTCATTTTTTTATTGGTGGTTTCA-TCTCAGTCGTTTTCATTTTTTGACTCGCAACTTAATACC
1 TTTCATTTTCTAACTCATCGTTTAATTCTGA-TCATTTTCAATTTTTGACTCATGATTTAAT--C
** *
3569577 T-G-TTGTTTTAATTTTTTGACTCGT-AGTTTAATCCC-GATCATTTTTAATT-TTAGACTCATG
63 TAGATCATTTTCATTTTTTGACTCGTGA-TTTAATCCCAG-TCATTTTTAATTCTTAGACTCATG
**
3569637 ATTTAAT-TTTGGTCAT
126 ATTTAATGCCT-GTCAT
* * *
3569653 TTTTATTTTCTAACTCAT-GATTTAATTTTGATCATTTTCAATTTTTGACT-AGTGGTTTAATCC
1 TTTCATTTTCTAACTCATCG-TTTAATTCTGATCATTTTCAATTTTTGACTCA-TGATTTAAT-C
* * * * *
3569716 TAG-TCATTTTCATTTTTTGACTTGTGATTTAGTTCCAGTCATTTTTATTTCTTTGACTCATGAT
63 TAGATCATTTTCATTTTTTGACTCGTGATTTAATCCCAGTCATTTTTAATTCTTAGACTCATGAT
3569780 TTAATGCCTGTCAT
128 TTAATGCCTGTCAT
* * * * * *
3569794 TTTCATTTTTTGACTTATCGTTTAATTCTGATCATTTTTATTTTTTGACTCATGATTTAATCTCG
1 TTTCATTTTCTAACTCATCGTTTAATTCTGATCATTTTCAATTTTTGACTCATGATTTAATCTAG
*
3569859 ATCATTTTCACTTTTT
66 ATCATTTTCATTTTTT
3569875 AACTTTTCGT
Statistics
Matches: 282, Mismatches: 60, Indels: 41
0.74 0.16 0.11
Matches are distributed among these distances:
139 4 0.01
140 79 0.28
141 131 0.46
142 61 0.22
143 2 0.01
144 5 0.02
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.53
Consensus pattern (141 bp):
TTTCATTTTCTAACTCATCGTTTAATTCTGATCATTTTCAATTTTTGACTCATGATTTAATCTAG
ATCATTTTCATTTTTTGACTCGTGATTTAATCCCAGTCATTTTTAATTCTTAGACTCATGATTTA
ATGCCTGTCAT
Found at i:3571040 original size:141 final size:141
Alignment explanation
Indices: 3570775--3571040 Score: 338
Period size: 141 Copynumber: 1.9 Consensus size: 141
3570765 TTAGTTTTCG
* *
3570775 ACTCATGATTTAATCTAAATCATTTTTAATTTTTGACTCATAATTTAATTTTGGTCATTTTCATT
1 ACTCATGATTTAATCTAAATCATTTTCAATTTTTGACTCATAATTTAATTATGGTCATTTTCATT
* * * *
3570840 TTTTGACTAGTGGTTTAATCCCGGTCATTTTCATTTTTTGACTAGTGATTTAGTTCCCATCAATT
66 TTCTGACTAGTGGTTTAATCCCGGTCATTTTCACTTTTTGACTAGTGATTTAATCCCCATCAATT
3570905 TTGTTTCTTTA
131 TTGTTTCTTTA
* * * * * * * * *
3570916 ACTCGTGATTTAATTTTAGTCATTTTCATTTTTTTACTCGTCATTTAATTATGGTCATTTTTATT
1 ACTCATGATTTAATCTAAATCATTTTCAATTTTTGACTCATAATTTAATTATGGTCATTTTCATT
** *
3570981 TTCTGACTCA-TGGTTTAATCTTGGTCATTTTCACTTTTTGACTTGTTG-TTTAATCCCCAT
66 TTCTGACT-AGTGGTTTAATCCCGGTCATTTTCACTTTTTGACTAG-TGATTTAATCCCCAT
3571041 TGTTTTACAT
Statistics
Matches: 105, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
141 102 0.97
142 3 0.03
ACGTcount: A:0.21, C:0.15, G:0.11, T:0.53
Consensus pattern (141 bp):
ACTCATGATTTAATCTAAATCATTTTCAATTTTTGACTCATAATTTAATTATGGTCATTTTCATT
TTCTGACTAGTGGTTTAATCCCGGTCATTTTCACTTTTTGACTAGTGATTTAATCCCCATCAATT
TTGTTTCTTTA
Found at i:3571444 original size:82 final size:82
Alignment explanation
Indices: 3571289--3571445 Score: 208
Period size: 82 Copynumber: 1.9 Consensus size: 82
3571279 ATTTGAGTCA
* ** * *
3571289 TTTTCATTTTTTAACTCATGTTTTAATCCTAGTCATTTTCATTTTTTTACTTGTAATTTAATTTT
1 TTTTCATTTTTTAACTCATGGTTTAATCCTAAACATTTTCATTTTTTGACTTGTAATTTAATTTC
*
3571354 GGTAATTTTTGTTATTG
66 GATAATTTTTGTTATTG
* * *
3571371 TTTTCATTTTTTGACTCATGGTTTAAT-CTCAAACGTTTTCATTTTTTGACTTGTGATTTAATTT
1 TTTTCATTTTTTAACTCATGGTTTAATCCT-AAACATTTTCATTTTTTGACTTGTAATTTAATTT
*
3571435 CGATCATTTTT
65 CGATAATTTTT
3571446 ATTTCTCTGA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
81 2 0.03
82 62 0.97
ACGTcount: A:0.20, C:0.11, G:0.10, T:0.59
Consensus pattern (82 bp):
TTTTCATTTTTTAACTCATGGTTTAATCCTAAACATTTTCATTTTTTGACTTGTAATTTAATTTC
GATAATTTTTGTTATTG
Found at i:3571759 original size:82 final size:82
Alignment explanation
Indices: 3571652--3571811 Score: 196
Period size: 82 Copynumber: 2.0 Consensus size: 82
3571642 ATTTCGGTTG
** * * *
3571652 TTTTCATTTTTTAACTTGTGTTTTAATC-CTGGTCATTTTCATTTTTTGACTCATAATTTAATTT
1 TTTTCATTTTTTAACTCATGGTTTAATCTC-GATCATTTTCATTTTCTGACTCATAATTTAATTT
3571716 CGATAATTTTTATTATCA
65 CGATAATTTTTATTATCA
* ** * * *
3571734 TTTTCATTTTTTGACTCATGGTTTAATCTCGATTGTTTTCATTTTCTGCCTCGTGATTTAATTTC
1 TTTTCATTTTTTAACTCATGGTTTAATCTCGATCATTTTCATTTTCTGACTCATAATTTAATTTC
*
3571799 GATCATTTTTATT
66 GATAATTTTTATT
3571812 TCTCTGGCTT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
82 64 0.98
83 1 0.02
ACGTcount: A:0.20, C:0.14, G:0.09, T:0.57
Consensus pattern (82 bp):
TTTTCATTTTTTAACTCATGGTTTAATCTCGATCATTTTCATTTTCTGACTCATAATTTAATTTC
GATAATTTTTATTATCA
Found at i:3571776 original size:41 final size:45
Alignment explanation
Indices: 3571684--3571779 Score: 110
Period size: 47 Copynumber: 2.2 Consensus size: 45
3571674 TTAATCCTGG
* *
3571684 TCATTTTCATTTTTTGACTCATAATTTAATTTCGATAATTTTTATTA
1 TCATTTTCATTTTTTGACTCATAATTTAATCTCG--AATTTGTATTA
**
3571731 TCATTTTCATTTTTTGACTCATGGTTTAATCTCG-A-TTGT-TT-
1 TCATTTTCATTTTTTGACTCATAATTTAATCTCGAATTTGTATTA
3571772 TCATTTTC
1 TCATTTTC
3571780 TGCCTCGTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
41 8 0.18
42 2 0.04
43 3 0.07
44 1 0.02
47 31 0.69
ACGTcount: A:0.22, C:0.14, G:0.07, T:0.57
Consensus pattern (45 bp):
TCATTTTCATTTTTTGACTCATAATTTAATCTCGAATTTGTATTA
Found at i:3572337 original size:141 final size:140
Alignment explanation
Indices: 3571730--3572512 Score: 480
Period size: 141 Copynumber: 5.5 Consensus size: 140
3571720 AATTTTTATT
* * * ** * * * *
3571730 ATCATTTTCATTTTTTGACTCATGGTTTAATCTCGATTGTTTTCATTTTCTGCCTCGTGATTTAA
1 ATCATTTTCATTTTCTAACTCATGGTTTAATTTCGATCATTTTCATTTTTTGACTCGAGGTTTAA
* * ** * **** * *
3571795 T-TTCGATCATTTTTATTTCTCTGGCTTGTGATTTAAAATTGATCA--TTTTCATTTTCGGACTC
66 TCTT-G-TCATTTTTATTT-TTTGACTCATGGTTTAATCCCGATCACTTTTTAATTTT-AGACTC
* *
3571857 ATGATTTAATCTTG
127 GTGATTTAATCTCG
* * ** * ** * * * *
3571871 ATCACTTTCATTTTCTAACCCATGGTTTAATCACGGTTGTTTTCATTTTCTGACTTGTGATTTAA
1 ATCATTTTCATTTTCTAACTCATGGTTTAATTTCGATCATTTTCATTTTTTGACTCGAGGTTTAA
** * *
3571936 TCAGGGTCATTTTTATTTTTTGACTCATGGTTTAATCCCGAT--CTTTTTTATTTTCTGACTCGT
66 TC-TTGTCATTTTTATTTTTTGACTCATGGTTTAATCCCGATCACTTTTTAATTTT-AGACTCGT
3571999 GATTTAATCTCG
129 GATTTAATCTCG
** * * *
3572011 ATCGCTTTCATTTTCTAACTCATGGTTTAATTCCCATCATTTTCATTTTTTGACTCGAGATTTAA
1 ATCATTTTCATTTTCTAACTCATGGTTTAATTTCGATCATTTTCATTTTTTGACTCGAGGTTTAA
* * * * ** * *
3572076 TTTTGATCATTTTTATTTCTCTGACTCGTGGTTTAATCCCCGTTGTCTTCATT--TTCTA-ACTC
66 TCTTG-TCATTTTTATTT-TTTGACTCATGGTTTAAT-CCCGATCACTT-TTTAATTTTAGACTC
* *
3572138 GTGGTTTAATGC-CA
127 GTGATTTAAT-CTCG
* * * ** * * * *
3572152 ATCATTTTTCATTTTTTTATTGGTGGTTTCATCTT-GGTCGTTTTCATTTTTTGACTCGCGGTTT
1 ATCA-TTTTCATTTTCTAACTCATGGTTTAAT-TTCGATCATTTTCATTTTTTGACTCGAGGTTT
* * *
3572216 AATACTTGTCGTTTTAATTTTTTGACTCATGGTTTAATCCCGATCACTTTTTAATTTTAGACTCC
64 AAT-CTTGTCATTTTTATTTTTTGACTCATGGTTTAATCCCGATCACTTTTTAATTTTAGACTCG
* *
3572281 TGATTTAATTTTG
128 TGATTTAATCTCG
* * * * * *
3572294 GTCATTTTTATTTTCTAACTCATGATTTAATTTTGATCATTTTCATTTTTTGACTAGTGGTTTAA
1 ATCATTTTCATTTTCTAACTCATGGTTTAATTTCGATCATTTTCATTTTTTGACTCGAGGTTTAA
* * ** * * * * *
3572359 TCCTAGTCATTTTCATTTTTTGACTTGTGATTTAGTTCC-AGTCA-TTTTTATTTCTTTGACT-G
66 T-CTTGTCATTTTTATTTTTTGACTCATGGTTTAATCCCGA-TCACTTTTTAATT-TTAGACTCG
*
3572421 ATGATTTAATGCTTG
128 -TGATTTAAT-CTCG
* * * * *
3572436 -TCATTTTCATTTTTTAACTAATCGTTTAATTTCGATCATTTTTATTTTTTGACTC-ATGATTTA
1 ATCATTTTCATTTTCTAACTCATGGTTTAATTTCGATCATTTTCATTTTTTGACTCGA-GGTTTA
*
3572499 ATCTCGATCATTTT
65 ATCTTG-TCATTTT
3572513 CACTTTTTAA
Statistics
Matches: 506, Mismatches: 111, Indels: 50
0.76 0.17 0.07
Matches are distributed among these distances:
139 3 0.01
140 131 0.26
141 278 0.55
142 82 0.16
143 7 0.01
144 3 0.01
145 2 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (140 bp):
ATCATTTTCATTTTCTAACTCATGGTTTAATTTCGATCATTTTCATTTTTTGACTCGAGGTTTAA
TCTTGTCATTTTTATTTTTTGACTCATGGTTTAATCCCGATCACTTTTTAATTTTAGACTCGTGA
TTTAATCTCG
Found at i:3572570 original size:141 final size:141
Alignment explanation
Indices: 3572425--3572679 Score: 315
Period size: 141 Copynumber: 1.8 Consensus size: 141
3572415 TGACTGATGA
* * *
3572425 TTTAATGC-TTGTCATTTTCATTTTTTAACTA-ATCGTTTAAT-TTCGATCATTTTTATTTTTTG
1 TTTAAT-CTTTGTCATTTTCATTTTCTAAC-ACATCATTTAATCCT-G-TCATTTTTATTTTTTG
**
3572487 ACTCATGATTTAAT-CTCGATC-ATTTTCACTTTT-TAACTTTTCGTTTAATCCTAGTTGTTTTA
62 ACTCATGATTTAATGC-CGATCGATTTTCA-TTTTCTAACTCATCGTTTAATCCTAGTTGTTTTA
3572549 CATTTTCTAACTCGTGC
125 CATTTTCTAACTCGTGC
* * *
3572566 TTTAATCTTTGTCATTTTCATTTTCTGACACATTATTTAATCCTGTCATTTTTATTTTTTGACTT
1 TTTAATCTTTGTCATTTTCATTTTCTAACACATCATTTAATCCTGTCATTTTTATTTTTTGACTC
* * *
3572631 GTGATTTAATGCCGATCGCTTTTCATTTTCTTACTCATCGTTTAATCCT
66 ATGATTTAATGCCGATCGATTTTCATTTTCTAACTCATCGTTTAATCCT
3572680 GATTGCTTTC
Statistics
Matches: 97, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
140 39 0.40
141 57 0.59
142 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.09, T:0.54
Consensus pattern (141 bp):
TTTAATCTTTGTCATTTTCATTTTCTAACACATCATTTAATCCTGTCATTTTTATTTTTTGACTC
ATGATTTAATGCCGATCGATTTTCATTTTCTAACTCATCGTTTAATCCTAGTTGTTTTACATTTT
CTAACTCGTGC
Found at i:3573710 original size:82 final size:82
Alignment explanation
Indices: 3573618--3573774 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 82
3573608 ATTCTGGTCA
* **
3573618 TTTTCATTTTTTAACTCATGTTTTAATC-CTAGTCATTTTCATTTTTTTACTTGTAATTTAATTT
1 TTTTCATTTTTTAACTCATGGTTTAATCTC-AAACATTTTCATTTTTTTACTTGTAATTTAATTT
*
3573682 TGGTAATTTTTGTTATTG
65 TGATAATTTTTGTTATTG
* * *
3573700 TTTTCATTTTTTGACTCATGGTTTAATCTCAAACGTTTTCATTTTTTTACTTGTGATTTAATTTT
1 TTTTCATTTTTTAACTCATGGTTTAATCTCAAACATTTTCATTTTTTTACTTGTAATTTAATTTT
*
3573765 GATCATTTTT
66 GATAATTTTT
3573775 ATTTCTCTGA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
82 65 0.98
83 1 0.02
ACGTcount: A:0.20, C:0.11, G:0.09, T:0.60
Consensus pattern (82 bp):
TTTTCATTTTTTAACTCATGGTTTAATCTCAAACATTTTCATTTTTTTACTTGTAATTTAATTTT
GATAATTTTTGTTATTG
Found at i:3574377 original size:247 final size:247
Alignment explanation
Indices: 3573802--3574454 Score: 642
Period size: 247 Copynumber: 2.7 Consensus size: 247
3573792 TTAAATATCG
* * * * * *
3573802 ATCATTTTCATTTTCTGACTTGTGATTTAA-TCTAAGTCGTTTTCATTT-TCTAGC-CAATGATT
1 ATCATTTTCATTTTATAACTTGTGATTTAATTCT-AGTCATTTTTATTTCTCTAACTC-ACGATT
* * * * * * * * * *
3573864 TAATCCCGATCATTTTCATTTTCTGACCCATGGTTTAGTCCTGGTC-CTTTTCATTTTTTGACTA
64 TAATCCCAATCATCTTCATTTTTTAACTCATCGTTTAATTCTGATCATTTTTCATTTTTTGACTA
* * * * * * * * *
3573928 ATGATTTAATTCGGGTCCTTTTTATTTTTTGACTCGTGGTTTAATCTTGGTCATTTTTATTTTTT
129 GTGGTTTAATCCCGGTCATTTTCATTTTTTGACTCGTGATTTAATCTTGATCATTTTTATTTTCT
*
3573993 GACTCATGATTTAATCTCGATCACTTTCATTTTTTGACTCATGGTTTAATTCTT
194 GACTCATGATTTAATCTCCATCACTTTCATTTTTTGACTCATGGTTTAATTCTT
* * * *
3574047 ATCATTTTCATTTTCTGACTTGTGATTTAATTCTAGTCATTTTTATTTCTCTGACTCACGGTTTA
1 ATCATTTTCATTTTATAACTTGTGATTTAATTCTAGTCATTTTTATTTCTCTAACTCACGATTTA
** ** * **
3574112 ATCCCTGTTGTCTTCATTTTTTAACTCATGGTTTAATT-TCGATTGTTTTTCATTTTTTGACTAG
66 ATCCCAATCATCTTCATTTTTTAACTCATCGTTTAATTCT-GATCATTTTTCATTTTTTGACTAG
*
3574176 TGGTTTCATCCCGGTCATTTTCATTTTTTGACTCGTGATTTAAT-TTCGATCATTTTTATTTTCT
130 TGGTTTAATCCCGGTCATTTTCATTTTTTGACTCGTGATTTAATCTT-GATCATTTTTATTTTCT
* ***
3574240 GACTTATGATTTAAT-TCCAGTTGTTTTCATTTTTTGACT-AGTGGTTTAA-TCTT
194 GACTCATGATTTAATCTCCA-TCACTTTCATTTTTTGACTCA-TGGTTTAATTCTT
* * * * * *
3574293 GGTCATTTTCATTTTATAACTTGTGATTTAGTTCTGGTCATTTTTATTTCTTTAACTTATGATTT
1 -ATCATTTTCATTTTATAACTTGTGATTTAATTCTAGTCATTTTTATTTCTCTAACTCACGATTT
** * * * * * *
3574358 AATGTCAATCATTTTCATTTTTTGACTCATCGTTTAATTCTGATCATTTTT-GTTTTCTAACTCG
65 AATCCCAATCATCTTCATTTTTTAACTCATCGTTTAATTCTGATCATTTTTCATTTTTTGACTAG
** *
3574422 TGGTTTAATCTTGGTCATTTTCACTTTTTGACT
130 TGGTTTAATCCCGGTCATTTTCATTTTTTGACT
3574455 TATGGTTTAA
Statistics
Matches: 335, Mismatches: 63, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
245 43 0.13
246 91 0.27
247 200 0.60
248 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (247 bp):
ATCATTTTCATTTTATAACTTGTGATTTAATTCTAGTCATTTTTATTTCTCTAACTCACGATTTA
ATCCCAATCATCTTCATTTTTTAACTCATCGTTTAATTCTGATCATTTTTCATTTTTTGACTAGT
GGTTTAATCCCGGTCATTTTCATTTTTTGACTCGTGATTTAATCTTGATCATTTTTATTTTCTGA
CTCATGATTTAATCTCCATCACTTTCATTTTTTGACTCATGGTTTAATTCTT
Done.