Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 33 of 93
Found at i:3575306 original size:18 final size:18
Alignment explanation
Indices: 3575261--3575308 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
3575251 TTAGACTCGG
3575261 GATTTAATTTTG-GTCAT
1 GATTTAATTTTGAGTCAT
* *
3575278 -TTTTATTTTTTGAGTCAT
1 GATTTA-ATTTTGAGTCAT
3575296 GATTTAATTTTGA
1 GATTTAATTTTGA
3575309 TCTTTTTCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
16 4 0.17
17 5 0.21
18 11 0.46
19 4 0.17
ACGTcount: A:0.23, C:0.04, G:0.15, T:0.58
Consensus pattern (18 bp):
GATTTAATTTTGAGTCAT
Found at i:3575360 original size:64 final size:64
Alignment explanation
Indices: 3575282--3575403 Score: 156
Period size: 64 Copynumber: 1.9 Consensus size: 64
3575272 GGTCATTTTT
* * * * * *
3575282 ATTTTTTGAGTCATGATTTAATTTTGATCTTTTTCATTTTTTAAC-CAGTGGTTTAATCCCGATC
1 ATTTTTTAACTCATGATTTAATCTCGACCATTTTCATTTTTTAACTCA-TGGTTTAATCCCGATC
* *
3575346 ATTTTTTAACTCATGTTTTAATCTCGACCATTTTCATTTTTTAACTCATGTTTTAATC
1 ATTTTTTAACTCATGATTTAATCTCGACCATTTTCATTTTTTAACTCATGGTTTAATC
3575404 TTGGCCATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
64 47 0.96
65 2 0.04
ACGTcount: A:0.23, C:0.16, G:0.09, T:0.52
Consensus pattern (64 bp):
ATTTTTTAACTCATGATTTAATCTCGACCATTTTCATTTTTTAACTCATGGTTTAATCCCGATC
Found at i:3576399 original size:35 final size:35
Alignment explanation
Indices: 3576306--3576403 Score: 115
Period size: 36 Copynumber: 2.8 Consensus size: 35
3576296 ATCTCAATTG
* * ***
3576306 TTTTCATTTTCTAACTCATGATTTAATTTTGATCA
1 TTTTCATTTTCTGACTCGTGATTTAATAGCGATCA
* *
3576341 TTTTTATTTCTCTGACTAGTGATTTAATAGCGATCA
1 TTTTCATTT-TCTGACTCGTGATTTAATAGCGATCA
*
3576377 TTTTCATTTTTTGACTCGTGATTTAAT
1 TTTTCATTTTCTGACTCGTGATTTAAT
3576404 TCTAGTCATT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
35 24 0.46
36 28 0.54
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.53
Consensus pattern (35 bp):
TTTTCATTTTCTGACTCGTGATTTAATAGCGATCA
Found at i:3576453 original size:141 final size:138
Alignment explanation
Indices: 3576265--3576704 Score: 420
Period size: 141 Copynumber: 3.1 Consensus size: 138
3576255 TAATTTTCAT
* *
3576265 TATCATTTTCATTTTCTGACACATGGTTTTAATCTCAATTGTTTTCATTTTCTAACTCATGATTT
1 TATCATTTTTATTTTCTGACACATGG-TTTAATCCCAATTGTTTTCATTTT-TAACTCATGATTT
* *
3576330 AATTTTGATCATTTTTATTTCTCTGACTAGTGATTTAATAGCGATCATTTTCATTTTTTGACTCG
64 AATTTTGATCATTTTTATTT-TCTGACTAGTGATTTAATACCGATCATTTTCATTTTTTGACTCA
*
3576395 TGATTTAATTC
128 TGATTTAATCC
* * * * *
3576406 TAGTCATTTTTATTTCCCTGAC-CATGGTTTAATCCCTATTGTCTTCATTTTTTGACTCATGGTT
1 TA-TCATTTTTATTT-TCTGACACATGGTTTAATCCCAATTGTTTTCA-TTTTTAACTCATGATT
** * * * * * **
3576470 TAATCCTAATCATTTTTCATTTTCTAACTGGTGGTTTCACCCCGATCATTTTCATTTTTTGACTC
63 TAATTTTGATCATTTTT-ATTTTCTGACTAGTGATTTAATACCGATCATTTTCATTTTTTGACTC
3576535 AT-AGTTTAATCCC
127 ATGA-TTTAAT-CC
* * * * * * ** *
3576548 TATCATTTTAATTTTTTTACTCGTGGTTGAAT-CCAAGTCATTTTCAGTTTTAGACTCATGATTT
1 TATCATTTTTATTTTCTGACACATGGTTTAATCCCAA-TTGTTTTCATTTTTA-ACTCATGATTT
* * * * * *
3576612 AATTTTGGTCATTTTTATTTTCTGACTTA-TAATTTAATTCCAATCGTTTTCATTTTTTGACTAA
64 AATTTTGATCATTTTTATTTTCTGAC-TAGTGATTTAATACCGATCATTTTCATTTTTTGACTCA
*
3576676 TGGTTTAATCC
128 TGATTTAATCC
3576687 TAATCATTTTTATTTTCT
1 T-ATCATTTTTATTTTCT
3576705 AACTCGTAAT
Statistics
Matches: 238, Mismatches: 49, Indels: 25
0.76 0.16 0.08
Matches are distributed among these distances:
139 3 0.01
140 68 0.29
141 135 0.57
142 27 0.11
143 5 0.02
ACGTcount: A:0.22, C:0.17, G:0.10, T:0.51
Consensus pattern (138 bp):
TATCATTTTTATTTTCTGACACATGGTTTAATCCCAATTGTTTTCATTTTTAACTCATGATTTAA
TTTTGATCATTTTTATTTTCTGACTAGTGATTTAATACCGATCATTTTCATTTTTTGACTCATGA
TTTAATCC
Found at i:3576800 original size:211 final size:211
Alignment explanation
Indices: 3576374--3576818 Score: 506
Period size: 211 Copynumber: 2.1 Consensus size: 211
3576364 TTAATAGCGA
* **
3576374 TCATTTTCATTTTTTGACTCGTGATTTAATTCTAGTCATTTTTATTTCCCTGACCATGGTTTAAT
1 TCATTTTCATTTTTTGACTCATGATTTAATTCTAGTCATTTTTATTTCCCTGACCATAATTTAAT
* * * * **
3576439 CCCTATTGTCTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTTCATTTTCTAACTGGTGG
66 CCCAATCGTCTTCATTTTTTGACTAATGGTTTAATCCTAATCATTTTTCATTTTCTAACTCGTAA
* *
3576504 TTTCACCCCGATCATTTTCATTTTTTGACTCATAGTTTAATCCCTATCATTTTAATTTTTTTACT
131 TTTCACCCAGATCATTTTCATTTTTTGACTCATAGTTTAATCCCTATCATTTTAATTTTTTGACT
**
3576569 CGTGGTTGAATCCAAG
196 CGTCATTGAATCCAAG
* * * * * *
3576585 TCATTTTCAGTTTTAGACTCATGATTTAATTTTGGTCATTTTTATTT-TCTGACTTATAATTTAA
1 TCATTTTCATTTTTTGACTCATGATTTAATTCTAGTCATTTTTATTTCCCTGAC-CATAATTTAA
* *
3576649 TTCCAATCGTTTTCATTTTTTGACTAATGGTTTAATCCTAATCATTTTT-ATTTTCTAACTCGTA
65 TCCCAATCGTCTTCATTTTTTGACTAATGGTTTAATCCTAATCATTTTTCATTTTCTAACTCGTA
* * * ** *
3576713 ATTT-AGTTCCAG-TTATTTTTATTTCTTTGACTCATTA-TTTAATGTC-AGTCATTTTCATTTT
130 ATTTCA--CCCAGATCATTTTCATTT-TTTGACTCA-TAGTTTAATCCCTA-TCATTTTAATTTT
* * * *
3576774 TTGACTGGTCATTTAATTCTAG
190 TTGACTCGTCATTGAATCCAAG
*
3576796 TCATTTTAATTTTTTGACTCATG
1 TCATTTTCATTTTTTGACTCATG
3576819 GTCCTATTTC
Statistics
Matches: 194, Mismatches: 34, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
209 1 0.01
210 32 0.16
211 159 0.82
212 2 0.01
ACGTcount: A:0.22, C:0.16, G:0.10, T:0.52
Consensus pattern (211 bp):
TCATTTTCATTTTTTGACTCATGATTTAATTCTAGTCATTTTTATTTCCCTGACCATAATTTAAT
CCCAATCGTCTTCATTTTTTGACTAATGGTTTAATCCTAATCATTTTTCATTTTCTAACTCGTAA
TTTCACCCAGATCATTTTCATTTTTTGACTCATAGTTTAATCCCTATCATTTTAATTTTTTGACT
CGTCATTGAATCCAAG
Found at i:3577499 original size:139 final size:140
Alignment explanation
Indices: 3577265--3577563 Score: 345
Period size: 139 Copynumber: 2.1 Consensus size: 140
3577255 TAATGTCAAA
* * * * *
3577265 CATTTTCATTTTTTGACTTGTGATTTAATCTCGGTCATTTTCCTTTTCTAACCCATGGTTTAATC
1 CATTTTTATTTTTTGACTCGTGATTTAATCTCAGTCATTTTCATTTTCTAACCCATGATTTAATC
* *
3577330 CTGGTCATTTTCATTTTCTGAACCATGGTTTAA-TCCCGATCATTTTCATTTTTTGACTCTTGAT
66 CTGATCATTTTCATTTTCTGAACCATGGTTTAATTCCC-ATCATTTTCATTTTTTGACTCGTGAT
3577394 TTAATCTAGGC
130 TTAATCTAGGC
* * **
3577405 CATTTTTATTTTTTGACTCGTGA-TTAATC-CTAGTCATTTTTATTTTCTTATTCATGATTTAAT
1 CATTTTTATTTTTTGACTCGTGATTTAATCTC-AGTCATTTTCATTTTCTAACCCATGATTTAAT
* * * * * **
3577468 -CTCGATCGTTTTCATTTTTTGACCCGTGGTTTAATTGCCATTGTTTTCATTTTTTGACTCGTGA
65 CCT-GATCATTTTCATTTTCTGAACCATGGTTTAATTCCCATCATTTTCATTTTTTGACTCGTGA
* * *
3577532 TTTAATTTTGGT
129 TTTAATCTAGGC
3577544 CATTTTTATTTCTTTGACTC
1 CATTTTTATTT-TTTGACTC
3577564 ATGGTGCAAT
Statistics
Matches: 134, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
138 3 0.02
139 99 0.74
140 32 0.24
ACGTcount: A:0.18, C:0.17, G:0.12, T:0.52
Consensus pattern (140 bp):
CATTTTTATTTTTTGACTCGTGATTTAATCTCAGTCATTTTCATTTTCTAACCCATGATTTAATC
CTGATCATTTTCATTTTCTGAACCATGGTTTAATTCCCATCATTTTCATTTTTTGACTCGTGATT
TAATCTAGGC
Found at i:3577910 original size:71 final size:70
Alignment explanation
Indices: 3577790--3578052 Score: 163
Period size: 71 Copynumber: 3.7 Consensus size: 70
3577780 TTAATCTTAG
* **** * * * *
3577790 TCATTTTCATTTTTTGACTTGTTGTTTAATTTTGGTCATTTTCCTTTTTCTAACTTATGGTTTAA
1 TCATTTTCA-TTTTTGACTTGTGGTTTAATCCCCGTCATTTTACATTTTCTAACTCATGCTTTAA
*
3577855 TCTCGA
65 TCCCGA
** * *
3577861 TCATTTTCACTTTTTGACTTGTGGTTTAATCCCCGTTGTTTTACATTTTCTGACTCGTGCTTTAA
1 TCATTTTCA-TTTTTGACTTGTGGTTTAATCCCCGTCATTTTACATTTTCTAACTCATGCTTTAA
*
3577926 TCCCTA
65 TCCCGA
* * * ** * * *
3577932 TCATTTTCATTTTCTAATACAT-T-GTTCAATCCCAATCATTTT-TATTTTTTAACTCATGATTT
1 TCATTTTCATTTT-T--GACTTGTGGTTTAATCCCCGTCATTTTACATTTTCTAACTCATGCTTT
* *
3577994 AATCCTGG
63 AATCCCGA
* ** * ** *
3578002 TCGTTTTCATTTTCTGACTCATGGTATAATCCTTGTCATTTTTCATTTTCT
1 TCATTTTCATTTT-TGACTTGTGGTTTAATCCCCGTCATTTTACATTTTCT
3578053 GACTTGTCGT
Statistics
Matches: 144, Mismatches: 42, Indels: 12
0.73 0.21 0.06
Matches are distributed among these distances:
68 2 0.01
69 1 0.01
70 52 0.36
71 85 0.59
72 1 0.01
73 3 0.02
ACGTcount: A:0.19, C:0.19, G:0.10, T:0.53
Consensus pattern (70 bp):
TCATTTTCATTTTTGACTTGTGGTTTAATCCCCGTCATTTTACATTTTCTAACTCATGCTTTAAT
CCCGA
Found at i:3578515 original size:138 final size:138
Alignment explanation
Indices: 3578352--3578600 Score: 367
Period size: 138 Copynumber: 1.8 Consensus size: 138
3578342 TATGACTTGT
* * *
3578352 GATTTAATACCAATCATTTTCATTTTTTGACTCATAATTTGATCTCTG-TCATTTTCGTTTTCTA
1 GATTTAATACCAATCATTTTCATTTTCTGACTCATAATTTAATCTC-GATCATTTTCATTTTCTA
** *
3578416 ACTTGTGATTTAATCCCAATCATTTTCATTTTCTGACTCATGATTTACATGGTCGTTTTCATTTT
65 ACCCGTGATTTAATCCCAATCATTTGCATTTTCTGACTCATGATTTACATGGTCGTTTTCATTTT
3578481 CTGACTCAA
130 CTGACTCAA
* * *
3578490 GATTTAAT-CGAAGTCATTTTTATTTTCTGACTCATGATTTAATCTCGATCATTTTCATTTTCTA
1 GATTTAATACCAA-TCATTTTCATTTTCTGACTCATAATTTAATCTCGATCATTTTCATTTTCTA
* *
3578554 ACCCGTGCTTTAATTCCAATCATTTGCATTTTCTGACTCATGATTTA
65 ACCCGTGATTTAATCCCAATCATTTGCATTTTCTGACTCATGATTTA
3578601 ATTCTGGTCA
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
137 4 0.04
138 94 0.96
ACGTcount: A:0.24, C:0.19, G:0.10, T:0.48
Consensus pattern (138 bp):
GATTTAATACCAATCATTTTCATTTTCTGACTCATAATTTAATCTCGATCATTTTCATTTTCTAA
CCCGTGATTTAATCCCAATCATTTGCATTTTCTGACTCATGATTTACATGGTCGTTTTCATTTTC
TGACTCAA
Found at i:3579450 original size:71 final size:71
Alignment explanation
Indices: 3579383--3579651 Score: 204
Period size: 71 Copynumber: 3.8 Consensus size: 71
3579373 GTGTTTTTTA
* *
3579383 TTTTTTGACTCGTTATTTAATCTTGGTCATTTTTATTT-TCTAACTCATGGTTTAATTCCCAACG
1 TTTTTTGACTCGTGATTTAATCTTGGTCATTTTTATTTCTCTAACTCATGGTTTAATCCCCAACG
3579447 TTTTCT
66 TTTTCT
* * * * **
3579453 TTTTTTGACTTGTGATTTAATTTTGGTCATTTTTATTTCTCTGACTCTTGGTTTAATCCCCATTG
1 TTTTTTGACTCGTGATTTAATCTTGGTCATTTTTATTTCTCTAACTCATGGTTTAATCCCCAACG
** *
3579518 TCATCA
66 TTTTCT
* * * * * * * ** * * ****
3579524 TTTTCTGACTCGTGGTTTAATCTCGATCGTTTTTCATTT-ACTAAATGGTGGTTTCATCTCGGTT
1 TTTTTTGACTCGTGATTTAATCTTGGTCATTTTT-ATTTCTCTAACTCATGGTTTAATCCCCAAC
*
3579588 GTTTTCA
65 GTTTTCT
* * * * *
3579595 TTTTTTGACTCGTGGTGTAATCCTT-GTCATTTTAATTT-GCTAACTCGTGGTTTAATC
1 TTTTTTGACTCGTGATTTAAT-CTTGGTCATTTTTATTTCTCTAACTCATGGTTTAATC
3579652 TCAATTATTT
Statistics
Matches: 157, Mismatches: 39, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
70 54 0.34
71 97 0.62
72 6 0.04
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (71 bp):
TTTTTTGACTCGTGATTTAATCTTGGTCATTTTTATTTCTCTAACTCATGGTTTAATCCCCAACG
TTTTCT
Found at i:3580640 original size:176 final size:176
Alignment explanation
Indices: 3580300--3580666 Score: 400
Period size: 176 Copynumber: 2.1 Consensus size: 176
3580290 AATTTTCATT
*
3580300 ATCATTTTCATTTTTTGACTCATGGTTTAATCTCAATCATTTTCATTTTCTGACTCATGATTTAA
1 ATCATTTTCATTTTTTGACCCATGGTTTAATCTCAATCATTTTCATTTTCTGACTCATGATTTAA
* * ** **
3580365 TTTGGATCATTTTTATTTCTCTAACTTGTGATTTAATACCGATCATTATCAATTTTTGACTCGTG
66 TTCGGATCATTCTTATTTCTCTAACTCATGATTTAATACCGATCATTATCAATTTTTGACTCACG
* * *
3580430 ATTTAATCTAAGTTATTTTCATTTTCTAACTCATGGTTTAATCCCG
131 ATTTAATCCAAGTTATCTTCATTTTCTAACTCATGGTTTAATCCAG
* * *
3580476 ATCATTTTCATTTTTTGACCCATGGTTTAATCAT-AGTCGTTTTTATTTTCTGACTCATGATTTA
1 ATCATTTTCATTTTTTGACCCATGGTTTAATC-TCAATCATTTTCATTTTCTGACTCATGATTTA
* * * * * * * **
3580540 ATTCGGGTCA-TCTTATTT-TTTGACTCATGGTTTAATTCTGGTCATT-TTTATTTCTCTGACTC
65 ATTCGGATCATTCTTATTTCTCTAACTCATGATTTAATACCGATCATTATCAATTT-T-TGACTC
* ** * * * *
3580602 ACGGTTTAATCCCTGTTGTCTTCATTTTTTTGACTCATGGTTTAATCCAT
128 ACGATTTAATCCAAGTTATCTTCA-TTTTCTAACTCATGGTTTAATCCAG
3580652 ATCATTTTTCATTTT
1 ATCA-TTTTCATTTT
3580667 CTAACTGGTG
Statistics
Matches: 157, Mismatches: 29, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
173 5 0.03
174 21 0.13
175 29 0.18
176 91 0.58
177 11 0.07
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.51
Consensus pattern (176 bp):
ATCATTTTCATTTTTTGACCCATGGTTTAATCTCAATCATTTTCATTTTCTGACTCATGATTTAA
TTCGGATCATTCTTATTTCTCTAACTCATGATTTAATACCGATCATTATCAATTTTTGACTCACG
ATTTAATCCAAGTTATCTTCATTTTCTAACTCATGGTTTAATCCAG
Found at i:3580716 original size:212 final size:211
Alignment explanation
Indices: 3580299--3580879 Score: 473
Period size: 212 Copynumber: 2.7 Consensus size: 211
3580289 TAATTTTCAT
* * * * * * * *
3580299 TATCATTTTCATTTTTTGACTCATGGTTTAATCTCA-ATCATTTTCA-TTTTCTGACTCATGATT
1 TATCATTTTAATTTTCTGACTCATGATTTAACCCCAGGTCATCTT-AGTTTT-AGACTCATGATT
* * *** * * ** *
3580362 TAATTTGGATCATTTTTATTTCTCTAACTTGTGA-TTTAATACCGATCAT-TATCAATTTTTGAC
64 TAATTTAGATCATTTTTATTT-TCTGACTCACGAGTTTAATCCCTATTGTCT-TCATTTTTTGAC
* * * *
3580425 TCGTGATTTAAT-CTAAGTTATTTTCATTTTCTAACTCATGGTTTAATCCCGATCATTTTCATTT
127 TAGTGGTTTAATCCCAA-TCATTTTCATTTTCTAACTCATGGTTTAATCCCGATCATTTTCATTT
* *
3580489 TTTGACCCATGGTTTAAT-CA
191 TCTAACCCATGGTTTAATCCA
* * ** * * * *
3580509 TAGTCGTTTTTATTTTCTGACTCATGATTTAA-TTCGGGTCATCTTATTTTTTGACTCATGGTTT
1 TA-TCATTTTAATTTTCTGACTCATGATTTAACCCCAGGTCATCTTAGTTTTAGACTCATGATTT
* *
3580573 AATTCT-GGTCATTTTTATTTCTCTGACTCACG-GTTTAATCCCTGTTGTCTTCATTTTTTTGAC
65 AATT-TAGATCATTTTTATTT-TCTGACTCACGAGTTTAATCCCTATTGTCTTCA-TTTTTTGAC
** * * * *
3580636 TCA-TGGTTTAAT-CCATATCATTTTTCATTTTCTAACTGGTGGTTTCATCTCGGTCGTTTTCAT
127 T-AGTGGTTTAATCCCA-ATCA-TTTTCATTTTCTAACTCATGGTTTAATCCCGATCATTTTCAT
* * *
3580699 TTTCTAACTCGTGGTTTAATCCC
189 TTTCTAACCCATGGTTTAATCCA
* * * * * * *
3580722 TATCATTTTAATTTTTTGACTTATGGTTTAACCCCAGTTCTTTTTAGTTTTAGACTCGTGATTTA
1 TATCATTTTAATTTTCTGACTCATGATTTAACCCCAGGTCATCTTAGTTTTAGACTCATGATTTA
* * ** *
3580787 ATTTAGATCATTTTTATTTTCTGACTCATGATTTTAATTTCTATTGTTTTCATTTTTTGACTAGT
66 ATTTAGATCATTTTTATTTTCTGACTCACGAGTTTAATCCCTATTGTCTTCATTTTTTGACTAGT
*
3580852 GGTTTAATCCCAGTCATTTTCATTTTCT
131 GGTTTAATCCCAATCATTTTCATTTTCT
3580880 GATTCATGAT
Statistics
Matches: 297, Mismatches: 58, Indels: 31
0.77 0.15 0.08
Matches are distributed among these distances:
210 55 0.19
211 71 0.24
212 110 0.37
213 61 0.21
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.51
Consensus pattern (211 bp):
TATCATTTTAATTTTCTGACTCATGATTTAACCCCAGGTCATCTTAGTTTTAGACTCATGATTTA
ATTTAGATCATTTTTATTTTCTGACTCACGAGTTTAATCCCTATTGTCTTCATTTTTTGACTAGT
GGTTTAATCCCAATCATTTTCATTTTCTAACTCATGGTTTAATCCCGATCATTTTCATTTTCTAA
CCCATGGTTTAATCCA
Found at i:3581622 original size:139 final size:139
Alignment explanation
Indices: 3581479--3581738 Score: 314
Period size: 139 Copynumber: 1.9 Consensus size: 139
3581469 AACCTATGGT
* * *
3581479 TTAATCTCGATCGTTTTCATTTT-CTGACCCTTGATTTAA-TCCTAGCCATTTTCATTTTCTGAC
1 TTAATCTCGATCATTTTCATTTTACT-ACCCGTGATTTAATTCC-A-CCATTTTCATTTTCTAAC
* *
3581542 TCATGATTTAGTGT-AAGT-ATTTTTTATTT-TCTAACTTGTGGTTTAATCCTGGTGGTTTTTAT
63 TCATGATTTA-TGTCAAGTCA-TTTTTATTTCTCTAACTCGTGGTTTAATCCTCGTGGTTTTTAT
3581604 TTTCTGACTTGTGA
126 TTTCTGACTTGTGA
* * * * **
3581618 TTAATCTCGATTATTTTCATTTTACTACTCGTGGTTTAATTCCATCATTTTCATTTTCTAACTTG
1 TTAATCTCGATCATTTTCATTTTACTACCCGTGATTTAATTCCACCATTTTCATTTTCTAACTCA
* * *
3581683 TGATTTATTTCTAGTCATTTTTATTTCTCTGACTCGTGGTTTAATCCTCGTGGTTT
66 TGATTTATGTCAAGTCATTTTTATTTCTCTAACTCGTGGTTTAATCCTCGTGGTTT
3581739 AATCCTTATC
Statistics
Matches: 102, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
137 2 0.02
138 36 0.35
139 59 0.58
140 5 0.05
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (139 bp):
TTAATCTCGATCATTTTCATTTTACTACCCGTGATTTAATTCCACCATTTTCATTTTCTAACTCA
TGATTTATGTCAAGTCATTTTTATTTCTCTAACTCGTGGTTTAATCCTCGTGGTTTTTATTTTCT
GACTTGTGA
Found at i:3581640 original size:34 final size:32
Alignment explanation
Indices: 3581597--3581687 Score: 92
Period size: 34 Copynumber: 2.7 Consensus size: 32
3581587 ATCCTGGTGG
* * *
3581597 TTTTTATTTTCTGACTTGTGATTAATCTCGATTA
1 TTTTCATTTTCT-ACTTGTGATTAAT-TCCATCA
* *
3581631 TTTTCATTTTACTACTCGTGGTTTAATTCCATCA
1 TTTTCATTTT-CTACTTGT-GATTAATTCCATCA
3581665 TTTTCATTTTCTAACTTGTGATT
1 TTTTCATTTTCT-ACTTGTGATT
3581688 TATTTCTAGT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
33 5 0.11
34 34 0.72
35 8 0.17
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.55
Consensus pattern (32 bp):
TTTTCATTTTCTACTTGTGATTAATTCCATCA
Found at i:3581685 original size:68 final size:70
Alignment explanation
Indices: 3581597--3581727 Score: 169
Period size: 68 Copynumber: 1.9 Consensus size: 70
3581587 ATCCTGGTGG
* * *
3581597 TTTTTATTTTCTGACTTGTGATTAATCTCGA-TTATTTTCATTT-TACT-ACTCGTGGTTTAATT
1 TTTTCATTTTCTAACTTGTGATTAATCTCGAGTCATTTTCATTTCT-CTGACTCGTGGTTTAATT
3581659 CCATCA
65 CCATCA
* * * *
3581665 TTTTCATTTTCTAACTTGTGATTTATTTCTAGTCATTTTTATTTCTCTGACTCGTGGTTTAAT
1 TTTTCATTTTCTAACTTGTGATTAATCTCGAGTCATTTTCATTTCTCTGACTCGTGGTTTAAT
3581728 CCTCGTGGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
68 26 0.49
69 12 0.23
70 15 0.28
ACGTcount: A:0.19, C:0.15, G:0.11, T:0.55
Consensus pattern (70 bp):
TTTTCATTTTCTAACTTGTGATTAATCTCGAGTCATTTTCATTTCTCTGACTCGTGGTTTAATTC
CATCA
Found at i:3581734 original size:14 final size:14
Alignment explanation
Indices: 3581715--3581744 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
3581705 ATTTCTCTGA
3581715 CTCGTGGTTTAATC
1 CTCGTGGTTTAATC
3581729 CTCGTGGTTTAATC
1 CTCGTGGTTTAATC
3581743 CT
1 CT
3581745 TATCTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.23, G:0.20, T:0.43
Consensus pattern (14 bp):
CTCGTGGTTTAATC
Found at i:3581846 original size:18 final size:17
Alignment explanation
Indices: 3581797--3581852 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
3581787 AGTTTTAGAC
*
3581797 TCATGATTTAATTTCGA
1 TCATGATTTAATTTTGA
* *
3581814 TCAT-TTTTATTTTTTGA
1 TCATGATTTA-ATTTTGA
3581831 CTCATGATTTAATTTTGA
1 -TCATGATTTAATTTTGA
3581849 TCAT
1 TCAT
3581853 TTTCTTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 4 0.13
17 13 0.42
18 10 0.32
19 4 0.13
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.55
Consensus pattern (17 bp):
TCATGATTTAATTTTGA
Found at i:3582904 original size:71 final size:71
Alignment explanation
Indices: 3582820--3583066 Score: 175
Period size: 71 Copynumber: 3.5 Consensus size: 71
3582810 TTCTTCATTT
* * * ** * *
3582820 TTTGACTCGTGGTTT-AATC-CTAATCATTTTTCATTTTCTGACTGGTGGTTTCATCTCAGTCGT
1 TTTGACTCATGGTTTGAATCTC-AATCA-TTTTAATTTTCTAACTCATGGTTTAATCTCAGTCAT
3582883 TTTCAAAA
64 TTTCAAAA
*
3582891 TTTGACTCATGGTTTGAATCTCACTCATTTTAATTTTCTAACTCATGGTTTAATCTCAGTCATTT
1 TTTGACTCATGGTTTGAATCTCAATCATTTTAATTTTCTAACTCATGGTTTAATCTCAGTCATTT
**
3582956 TC-AGT
66 TCAAAA
** * * * * * * * *
3582961 TTTAGACTTGTGATTT-AATTTCAATCATTTTTATTTTATGACTCGTGATTTAATATC-GTCATT
1 TTT-GACTCATGGTTTGAATCTCAATCATTTTAATTTTCTAACTCATGGTTTAATCTCAGTCATT
* ***
3583024 TTTATTT
65 TTCAAAA
* *
3583031 TTTGACT-AGTGGTTT-AATCCCAATCATTTTCATTTT
1 TTTGACTCA-TGGTTTGAATCTCAATCATTTTAATTTT
3583067 TTGACTCGTG
Statistics
Matches: 142, Mismatches: 29, Indels: 12
0.78 0.16 0.07
Matches are distributed among these distances:
69 35 0.25
70 41 0.29
71 57 0.40
72 8 0.06
73 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (71 bp):
TTTGACTCATGGTTTGAATCTCAATCATTTTAATTTTCTAACTCATGGTTTAATCTCAGTCATTT
TCAAAA
Found at i:3583073 original size:175 final size:174
Alignment explanation
Indices: 3582388--3590748 Score: 1126
Period size: 176 Copynumber: 47.1 Consensus size: 174
3582378 ATTTTCATTA
*
3582388 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTTATTTTTTGACTCATGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAG-TCATTTTCATTTTTTGACTCATGATTTAA
* * *
3582452 TTTCGATCATTTTTATTTCTCTGACTGGTGATTTAATAC-CGATCATTTTCATTTTTTGACTCA-
65 TTTCAATCATTTTTATTT-TCTGACTCGTGATTTAAT-CTCG-TCATTTTTATTTTTTGACT-AG
* * * * *
3582515 TGATTTAATATC-GTCATTTTCGTTTTCTT-ACCCATGGTTTAATCT-AGA
126 TGGTTTAATCTCAGTCATTTTCATTTT-TTGACTCATGGTTTAATCTCA-C
** * * * *
3582563 TCATTTTCA-TTTTCAAATCTATGGTTTAGTCCCTA-TCATTTTCATTTTCTGACTCATGATTTA
1 TCATTTTCATTTTTTGACTC-ATGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGATTTA
* * * *
3582626 ATCT-AGGTCATTTTTATTTTCTGACTCATGGTTTAATCCTAC-TCATTTTTATTTTTTGACTCA
64 ATTTCA-ATCATTTTTATTTTCTGACTCGTGATTTAAT-CT-CGTCATTTTTATTTTTTGACT-A
* * ** * * * *
3582689 -TGATTTAATCTTAGTGGTTTTCATTTTCTAACTCGTGGTTTAATTCCCAC
125 GTGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAA-TCTCAC
* * * * ** * * *
3582739 -CTTTTTCATTTTTTGACTCGTGATTTAATTTTGGTAATTTTTATTTCTTTGACTCATGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCATTT-TTTGACTCATGATTTAA
** * * * ** * *
3582803 --TC-CCCGTTTCTTCATTTTTTGACTCGTGGTTTAATCCTAATCATTTTTCATTTTCTGACTGG
65 TTTCAATCATTT-TT-ATTTTCTGACTCGTGATTTAAT-CTCGTCATTTTT-ATTTTTTGACTAG
* * ***
3582865 TGGTTTCATCTCAGTCGTTTTCAAAATTTGACTCATGGTTTGAATCTCAC
126 TGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTT-AATCTCAC
* * * * * **
3582915 TCATTTTAATTTTCTAACTCATGGTTTAATCTCAGTCATTTTCAGTTTTAGACTTGTGATTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGATTTAAT
* *
3582980 TTCAATCATTTTTATTTTATGACTCGTGATTTAATATCGTCATTTTTATTTTTTGACTAGTGGTT
66 TTCAATCATTTTTATTTTCTGACTCGTGATTTAATCTCGTCATTTTTATTTTTTGACTAGTGGTT
* * * * * *
3583045 TAATCCCAATCATTTTCATTTTTTGACTCGTGATTTAGT-TCCAG
131 TAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCT-CAC
* * * * * *
3583089 TTATTTTTATTTCTTTGACT-AGTGATTTAATGTCGGTCATTTTCATTTTTTGACTTATCG-TTT
1 TCATTTTCATTT-TTTGACTCA-TGGTTTAATCTCAGTCATTTTCATTTTTTGACTCAT-GATTT
* * * * *
3583152 AATTTCAATCA-TTTTATTTTCTAACTCGTGATCTAATCTCGGTCATTTTCACTTTTTGACTTGT
63 AATTTCAATCATTTTTATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATTTTTTGACTAGT
** * * * **
3583216 GGTTTAATCTTCA-TTGTTTTACATTTTTTGACTCGTGCTTTAATCACTG
127 GGTTTAATC-TCAGTCATTTT-CATTTTTTGACTCATGGTTTAATCTCAC
* * * *
3583265 TCGTTTTCATTTTTTGA-TGCATTGTTTAATCCCTA-TCATTTTTATTTTTTGACTCATGCA-TT
1 TCATTTTCATTTTTTGACT-CATGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATG-ATTT
** * ** * * * * * *
3583327 AATCCCATTTGTTTTCATTTTTTGACAT-GTGGTATAATC-CTGATCATTTTTCAATTTATGACT
63 AATTTCAATCATTTTTATTTTCTGAC-TCGTGATTTAATCTC-G-TCATTTTT-ATTTTTTGACT
* * ** * * **
3583390 CA-TTGTTTAATC-GA-TCGCTTTCATTTTTTGACTCCTAGTTTAATC-CTGG
124 -AGTGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTC-AC
** * * * * * * * *
3583439 TGGTTTTCATTTTCTCACTCAAGGTTTAGTCCCAATCATTTTCATTTTCTAACTC--GCACTTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATG-A-TTTA
** * * * * * * ** * *
3583502 ATTTCGGT-AGTTTTCATTTTTTAACTCATGTTTTAATCCCAACCATTTTCATTTTCTGACTCAT
64 ATTTCAATCA-TTTTTATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATTTTTTGA--C-T
* ** * * * * *
3583566 AATTTAATTTTGATAATTTTCATTATCATTTTCATTTTCTAACTCGTGGTTTAATCTCGA-
124 -A-GT--GGTT--TAA-TCTCA--GTCATTTTCATTTTTTGACTCATGGTTTAATCTC-AC
** ** * * * **
3583626 TTGTTTTCATTTTTTGACTTGTGATTTAATTTC-GATCATTTTTATTTCTTTGACTTGTGATTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAG-TCATTTTCATTT-TTTGACTCATGATTTA
* ** ** * * * * * *
3583690 GTACCAATTGTTTTCATTTTCTGACTCATGATTTAATCTCTGTCATTTTCA-TTTCTAACCCA-T
64 ATTTCAATCATTTTTATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATTTTTTGA-CTAGT
* **
3583753 GGTTTAATC-CTAGTCATTTTCATTTTCTGAC-CTATGGTTTAATC-CTTG
127 GGTTTAATCTC-AGTCATTTTCATTTTTTGACTC-ATGGTTTAATCTC-AC
* * * ** * * **
3583801 TTATTTT-AATTTTTGACTCATGATTTAATCTGGGTCATTTTTATTTTCTGACTTGTGATTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGATTTAAT
* ** * * * * ** *
3583865 CTC-GGC-TGTTTTCATTTTTTGACTCATGGTTTAAT-TC-CCATTGTTTTCATTTCCTGACTCG
66 TTCAATCAT-TTTT-ATTTTCTGACTCGTGATTTAATCTCGTCA-T-TTTT-ATTTTTTGACTAG
* * ** * * ** *
3583926 TGATTTAATTTTGGTCATTTTTATTTCTCTGACTTGTGGTTTAATCCTC-G
126 TGGTTTAATCTCAGTCATTTTCATTT-TTTGACTCATGGTTTAAT-CTCAC
** * * * * ** * **
3583976 TTGTCTTCATTTTCTGACTCATGGTTTAATCCCAATCATTTTTCATTTTTTGACTGGTGGTTCCA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCA-TTTTCATTTTTTGACTCATGATTTAA
* *** * * * * * * * * *
3584041 TCTGGGTCATTTTCATTTTTTGAGTTGTGGTTTAATCCCTGTCGTTTTAATTTTCTGACTCA-TG
65 TTTCAATCATTTTTATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATTTTTTGACT-AGTG
* * * * * * * * * * *
3584105 GTTTAATCCCAATCGTTTTTAGTTTTAGACTTATGATTTAATTTAAG
128 GTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTCAC
* * * ** * * ** *
3584152 TTATTTTTATTTTCTGACTTGTGATTTAAT-TCTGTTTGTTTTCATTTTTTGACT-AGTGGTTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAG-TCATTTTCATTTTTTGACTCA-TGATTTA
* * * * * * *
3584215 A-TCCTAGTCATTTTCATTTTCTGACTCGTGGTCTAATCTCGATCATTTTCACTTTTTGACTTA-
64 ATTTC-AATCATTTTTATTTTCTGACTCGTGATTTAATCTCG-TCATTTTTATTTTTTGAC-TAG
* * * * ** * **
3584278 TGGTTTAATCCCCGTTATTTTACATTTTTTGGCTTGTGCTTTAATAC-CTG
126 TGGTTTAATCTCAGTCATTTT-CATTTTTTGACTCATGGTTTAAT-CTCAC
* * * * * **
3584328 TCATTTTCATTTTCTGA-TGAGTTGTTTAATCCCTA-TCATTTTTATTTTTTGACTTGTGATTTA
1 TCATTTTCATTTTTTGACTCA-TGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGATTTA
* * * ** * *
3584391 A-TCCTAATCATTTTTCATTTTTTGACTCATCG-TTTAATC-CTGATCGCTTTCATTTTCTGACT
64 ATTTC-AATCATTTTT-ATTTTCTGACTCGT-GATTTAATCTC-G-TCATTTTTATTTTTTGACT
* * ** * * * * * *
3584453 CA-TGGTTTAATCTTACTGGTTTTTATTTTTTCACTCAAGGTTTAGTCCCAA
124 -AGTGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTCAC
* * * * * * *
3584504 TCATTTTCATTTTCTAACT--TGCGTGTTAATTTC-GATCGTTTTCAGTTTTTAACTCATGTTTT
1 TCATTTTCATTTTTTGACTCATG-GT-TTAATCTCAG-TCATTTTCATTTTTTGACTCATGATTT
* ** * * * * *
3584566 AA-TCCTAGCCATTTTCATTTTCTAACTCGTAATTTAAT-TAGGGTAATTTTCATTATCATTTTT
63 AATTTC-AATCATTTTTATTTTCTGACTCGTGATTTAATCT--CG------TCA-T-T--TTTAT
* * * *
3584629 GTTTTCTGACTCA-TGGTTTAATCTTGATCATTTTTTGGTTATTTTTATTTTTTGACTTATGATT
115 -TTTT-TGACT-AGTGGTTTAATC----TCA-------GTCATTTTCATTTTTTGACTCATGGTT
* * ***
3584693 TGATTTTGG
166 TAATCTCAC
* * * * * *
3584702 TCATTTTCATTTTTTGAGTTATGGTTTAAT-TCTGGTCATTTTCATCTTTTGACTCGTGATTTGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGATTTAA
* * * * * * * * *
3584766 TTTCAGTCATTTTTATTTCTTTGACTTGTGATTTAATGCTAGTCATTTTCATTTTTGGAGTTGTC
65 TTTCAATCATTTTTATTT-TCTGACTCGTGATTTAAT-CTCGTCATTTTTATTTTTTGACTAGTG
* * * * * *
3584831 ATTTAATTTC-GATCGTTTTCATTTTCTAACTCACGGTTTAATCTCGA-
128 GTTTAATCTCAG-TCATTTTCATTTTTTGACTCATGGTTTAATCTC-AC
* * * * ** ** *
3584878 TCATTTTCACTTTTTGATTTATGGTTTAATCCCCA-TTGTTTTACATTTTTTGACTTGTGCTTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTCAGTCATTTT-CATTTTTTGACTCATGATTTA
** * * * * * * * * *
3584942 A-ACCTAGTCATTTTCAGTTTT-TGACACGTTG-CTTAATC-CCT-ATCATGT-TTTTTTGAATC
64 ATTTC-AATCATTTTTA-TTTTCTGACTCG-TGATTTAATCTCGTCAT-TTTTATTTTTTGACTA
* * ** * * * **
3585001 GTGATTTAATC-CTGGTTGTTTTCATTTTTTAACTCGTGGTATAATCGT-TG
125 GTGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGGTTTAATC-TCAC
* * ***
3585051 TCATTTTTCATTTTTTGAC-C-TGTTATTTAATC-CAATTGCTTTCATTTTTTGACTCATGATTT
1 TCA-TTTTCATTTTTTGACTCATG--GTTTAATCTCAGTCATTTTCATTTTTTGACTCATGATTT
* * * * * ** * * * *
3585113 AA-TCCTGAT-AGTTTTCATTTCCTCACTCAAGGTTTAGTCCCAGTCATTTTCATTTTTTGAC--
63 AATTTC-AATCA-TTTTTATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATTTTTTGACTA
* * *
3585174 ---------TCACA--CATTTTCATTTTTTAACTCATGTTTTAATC-CTAGC
125 GTGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTC-A-C
* * * * * * *
3585214 -CATTTTTATTTTCTGACTCGTGATTTAATTTTGGTTATTTTCGTTATCATTTTTATTTTTTGAC
1 TCATTTTCATTTTTTGACTCATGGTTTAA---T-CTCA-----G---TCATTTTCATTTTTTGAC
* * ** * * * * * * *
3585278 T--TGTAGTTTAATCTCGATTGTTTTCATTTTTTGACTCATGATTTAGTTTCAATCATTCTTATT
54 TCATG-A-TTTAATTTCAATCATTTTTATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATT
* * * *** *
3585341 TCTTTGACTTGTGATTTAATACTGA-TCATTTTCATTTTTCTGACTCATGACCTAATCTCAA
116 T-TTTGACTAGTGGTTTAAT-CTCAGTCATTTTCATTTTT-TGACTCATGGTTTAATCTCAC
** ** * * * ** * * * *
3585402 TTGTTTTTGTTTTCTAACCCATGGTTTAATCTTGGTCATTTTCATTTTCTAACCCATGGTTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGATTTAAT
* ** * * * *
3585467 CGT-GGTCATTTTCATTTTTTGACTCATCG-TTTAATCTAAGTCATTTTTATTTTTTGACTAGTG
66 -TTCAATCATTTTTATTTTCTGACTCGT-GATTTAATCT-CGTCATTTTTATTTTTTGACTAGTG
* ** * * *
3585530 GTTCAATC-CTAGTGGTTTTTATTTTTTGACTCATGATTTAATCTTGA-
128 GTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGGTTTAATC-TCAC
** * * * * * *
3585577 TTGTTTTCATTTTCTAACTCATGGTTTAATTCCCA-TCATTTTCATTTTCTGACTCGTGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAA-TCTCAGTCATTTTCATTTTTTGACTCATGATTTAA
* * * * * * * * * *
3585641 TCTT-GATCGTTTTTCATTTTCTGATTGGTGGTTTCATCTCTATCATTTTCATTTTCTGATTCA-
65 T-TTCAATCATTTTT-ATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATTTTTTGACT-AG
* * ** * * * * * * *
3585704 TGGTTTGATC-CTTGTCGCTTTAATTTTCTAATTCGTGGTTTAGTC-CTAG
126 TGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGGTTTAATCTC-AC
* * ** ** * ** * * *
3585753 TCGTTTTCAGTTTTAAACTCATGACTTAATTTTGGTCATTTTTATTTTCTGACTCATGATTTGAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGATTTAAT
*** ** * * ** * * * *
3585818 TTTGGTCATTTTCGTTTTTTGACTAGTGGCTTAATCCTAGTCATTTTCATTTTTTGACTCGTGAT
66 TTCAATCATTTTTATTTTCTGACTCGTGATTTAAT-CTCGTCATTTTTATTTTTTGACTAGTGGT
* * ** ** * **
3585883 TTGAT-TCCAATTGTTTTTGTTTCTTTGACTCATGATTTAATGCT-GG
130 TTAATCT-CAGTCATTTTCATTT-TTTGACTCATGGTTTAAT-CTCAC
* ** * * *
3585929 TCATTTTCATTTTTTGACTCGTTATTTAATTTC-GATCACTTTCATTTTCTGACTCATGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAG-TCATTTTCATTTTTTGACTCATGATTTAA
** * * * * ** * * *
3585993 TCTT-TGTCATTTTCACTTTT-TGGCTTGTGGTTTAATAC-CTGTTGTTTTACATTTTCTGACTT
65 T-TTCAATCATTTTTA-TTTTCTGACTCGTGATTTAAT-CTC-GTCATTTT-TATTTTTTGACTA
* * * * * ** * **
3586055 GTGCTTTAATCCCTA-TCATTTTCATTTTCTAACGCATTATTTAATCCCTG
125 GTGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGGTTTAATCTCAC
* * * ** *
3586105 TCATTTTTATTTTTTGACTCATGATTTAAT-TCTGATTGTTTTCATTTTTTGACTCAT-AGTATA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAG-TCATTTTCATTTTTTGACTCATGA-TTTA
* * ** ** * * ** *
3586168 A-TCCTGATTGTTTTTCATTTTCTGACTTATCATTTAATCCCGATCGCTTTCATTTTTTGACTCA
64 ATTTC-AATCATTTTT-ATTTTCTGACTCGTGATTTAATCTCG-TCATTTTTATTTTTTGACT-A
* ** * * * * *
3586232 -AGGTTTAATC-CTAGTGGTTTTCATTTTTTCACTTAGGGTTTAGTC-CTAG
125 GTGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGGTTTAATCTC-AC
* * * *
3586281 TCATTTTCATTTTCTGACTTATGCTTTAAT-TCTAGTCATTTTCA---TTTAACTCAT-ATTTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGA-TTTA
** * *** * *
3586341 ATCTT-GGTCATTTTCATTTTCTGACTCACAATTTAATTCTAGTAATTTTCATTATCGTTTTTGT
64 AT-TTCAATCATTTTTATTTTCTGACTCGTGATTTAA-TCTCGTCA-TTT--TTAT--TTTTTG-
* * * * * *
3586405 TTTTTAACTTGTGGTTTAATCTCAATCATTTTCATTTTCTGACTCATGATTTAATTTTGA-
121 ------ACTAGTGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAA-TCTCAC
* * ** * ** *
3586465 TCATTTTTATTTCTGTGGTTCATGATTTAATAGCGGTCATTTTCATTTTCTTG-CTCATGATTTA
1 TCATTTTCATTT-TTTGACTCATGGTTTAATCTCAGTCATTTTCATTTT-TTGACTCATGATTTA
** * * * * * * * *
3586529 ATCTT-GGTCATTTTCAGTTTCTAACCCATGGTTTAATC-CAGTCATTTTCATTTTTTGACCCA-
64 AT-TTCAATCATTTTTATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATTTTTTGA-CTAG
* * * *
3586591 TGGTTTAATCTAAGTCATTTTTATTTTCTGACTCATGATTTAATCTCGA-
126 TGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTC-AC
* * *
3586640 TCATTTTCATTTTTTGACTCATGGTTTAATTCCCA-TCATTTTCATTTTCTGACTCATGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAA-TCTCAGTCATTTTCATTTTTTGACTCATGATTTAA
* ** * * * * *
3586704 -TCCTGGTTATTTTTATTTCTCTAAGTCGTGGTTTAATC-C-CCATTGTCTTCATTTTTTGATTC
65 TTTC-AATCATTTTTATTT-TCTGACTCGTGATTTAATCTCGTCATT-T-TT-ATTTTTTGA--C
* * * * * * *
3586766 TGACTCATGGTTTAAT-TCTGGTCATTTTTATTTCTCTAATTCGTGGTTTAATC-C-C
123 T-A---GTGGTTTAATCTC-AGTCATTTTCATTT-TTTGACTCATGGTTTAATCTCAC
* * * * * **
3586821 -CATTGTCTTCATTTTCTGACTCATGGTTTAATC-CTAATCGTTTTTCATTTTCTGATTGGT-AG
1 TCA-T-T-TTCATTTTTTGACTCATGGTTTAATCTC-AGTC-ATTTTCATTTTTTGACTCATGA-
* * * * *
3586883 TTTCATCTCGATCATTTTCATTTTCTGACTCGTTG-TTTAAT-TCCT-ATAGTTTTAATTTTTTG
60 TTTAATTTCAATCATTTTTATTTTCTGACTCG-TGATTTAATCTCGTCAT--TTTT-ATTTTTTG
* * * *
3586945 ACTTA-TGG-TTACTCTC-GATCATTTT--TTGTTTTAGACTTATGATTTAATTTCAGC
121 AC-TAGTGGTTTAATCTCAG-TCATTTTCATT-TTTT-GACTCATGGTTTAATCTCA-C
* * * * * * ** *
3586999 -CATTTTTATTTTCTGACTCGTGATTTGATTTTGGTCATTTTCATTTTTTGACT-AGTGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCATTTTTTGACTCA-TGATTTAA
* * * * * * * * *
3587062 TCT-GATCATTTTCATTTTTTGACTCGTTG-CTTAATTTTGATCATTTTTATTTTTTGACTTGCG
65 TTTCAATCATTTTTATTTTCTGACTCG-TGATTTAATCTCG-TCATTTTTATTTTTTGACTAGTG
* * * ** *
3587125 ATTTAATCTCAATCATTTTCACTTTTTGACTTGTGGTTTAATCCCTA-
128 GTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTC-AC
** * * * * * *
3587172 TTGTTTTACATTTTTTGACTCATGCTTTAATC-CCGATCGTTTTCATTTTTCGACACGTTG-TTT
1 TCATTTT-CATTTTTTGACTCATGGTTTAATCTCAG-TCATTTTCATTTTTTGACTC-ATGATTT
** * * * * * * *
3587235 AATGCCTATCTTTTTTATTTTTTGACTTGTGATTTAATCCCGATCATTTTCATTTTTTGACTTGT
63 AATTTCAATCATTTTTATTTTCTGACTCGTGATTTAATCTCG-TCATTTTTATTTTTTGACTAGT
* * *
3587300 GGTATAATCTC-GATCATTTTTCATTTTTTGACTCATCGTTTAATCCCGA-
127 GGTTTAATCTCAG-TCA-TTTTCATTTTTTGACTCATGGTTTAATCTC-AC
** * * * ** * * * * *
3587349 TCGCTTTCATTTTCTAACTCATGGTTTAATC-CTGGTGGTTTT--TATTCTCATTTAGTG-TTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCA-TGATTTA
* ** * *
3587410 GTCCCAATCGTTTTTATTTTCTGACTCGT-ACTTTAAT-TC--CAGTTGTTTCATTTTTTAACTC
64 ATTTCAATCATTTTTATTTTCTGACTCGTGA-TTTAATCTCGTCA-TT-TTT-ATTTTTTGACT-
* * * ** * *
3587471 A-TGTTTTAATCT-TGATCATTTTAATTTTTTGACTCATAATTTAATTATGGTAGTTTTCATTA
124 AGTGGTTTAATCTCAG-TCATTTTCATTTTTTGACTCAT--GGT--TTA----A--TCTCA--C
* * * * * *
3587533 TCATTTTCATTTTCTGACTCGTGGTTTAATCT-TGATCGTTTTCATTTTCTAACTCATGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAG-TCATTTTCATTTTTTGACTCATGATTTAA
* * * * * * * * *
3587597 TTTCCATCATTTTTATTTCTCCGGCTTGTGATTTAATATCGATCGTTTTCATTTTCTGATTTA-T
65 TTTCAATCATTTTTATTT-TCTGACTCGTGATTTAATCTCG-TCATTTTTATTTTTTGA-CTAGT
* * * * * * * * **
3587661 GATTTATTCTTAATCGTTTTCATTTTCTAACCCATGGTTTAATCTCGG
127 GGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTCAC
* * * * *
3587709 TCATTTTCATTTTCTAACCCATGGTTTAAT-TCAGGTCATTTTTATTTTCTGACTCATGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCA-GTCATTTTCATTTTTTGACTCATGATTTAA
** * * * *
3587773 TTGT-GGTCATTTTTATTTTTTGATTCGTGATTTAATCTCGGTCATTTTCATTTTTTGACTCGTG
65 TT-TCAATCATTTTTATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATTTTTTGACTAGTG
* * * * * ***
3587837 GCTTAATTCCCA-TCATTTTCATTTTTTGACTCGTGATTTAATTTTGG
128 GTTTAA-TCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTCAC
* ** * ** * * * * * *
3587884 TCATTTTTATTTCTTTGACTTGTGGTTTAATCTCCGTTGTCTTCATTTTCTAACTCAAGGTTAAA
1 TCATTTTCATTT-TTTGACTCATGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGATTTAA
* * * * * * * * * *
3587949 TTGT-GATCGTTTTTCATTTTCTGGCTAGTGGTTTCATTTCGATCATTTTCATTTTCTGACTCGT
65 TT-TCAATCATTTTT-ATTTTCTGACTCGTGATTTAATCTCG-TCATTTTTATTTTTTGACTAGT
** * *** * * *
3588013 GGTTTAATCTTTGTCATTTTAATTTTCCAACTCAAGGTTTAATCCCAG
127 GGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTCAC
* * ** * * * * ** *
3588061 TCATTTTCAGTTTTAGACTTGTGATTTAATTTC-GACCATTTTTATTTTTTGACTTGTGATTTGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAG-TCATTTTCATTTTTTGACTCATGATTTAA
** * * * * * * * *
3588125 TTTCGGTCGTTTTCATTTTTTCACTAC-TGGTTTAATCTCGATCATTTTCATGTTTTGACTTGTG
65 TTTCAATCATTTTTATTTTCTGACT-CGTGATTTAATCTCG-TCATTTTTATTTTTTGACTAGTG
* ** * * * * ** * *
3588189 ATTCGATTTCGGTCATTTTTATTTCTTTGATTTGTGATTTAATGC-CAA
128 GTTTAATCTCAGTCATTTTCATTT-TTTGACTCATGGTTTAAT-CTCAC
* ** * * * * **
3588237 TCATTTTCATTTTTTGACTCGTTATTTAATTTAAGTCGTTTTCATTTTTTTGATTCGCGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCA-TTTTTTGACTCATGATTTAA
* * * * * * * * *
3588302 TCTCAGTTATTTTCACTTTT-TGACT--TG---TAGT-T--TAATTTTCATTTTTTGACTTGTAG
65 TTTCAATCATTTTTA-TTTTCTGACTCGTGATTTAATCTCGTCATTTTTATTTTTTGACTAGTGG
* * ** * * * **
3588358 TTTAATCCCTGTTGTTTTACACTTTTTGACT-AGTGCTTTAATCCCTG
129 TTTAATCTCAGTCATTTT-CATTTTTTGACTCA-TGGTTTAATCTCAC
* * * * * * *
3588405 TCCTTTTCATTTTTTAACGCATTGTTTAATC-CCGTCATTGTTTATTTTTTGACTCGTGATTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATT-TTCATTTTTTGACTCATGATTTAA
** * * * * * *** * * *
3588469 TCCCAGTCATTTTCATTTTTTAACTTGTGGCATAATCCCAGTCATTTTTTATTTTTCGACTCGTC
65 TTTCAATCATTTTTATTTTCTGACTCGTGATTTAATCTC-GTCA-TTTTTATTTTTTGACTAGT-
** * * * * * * *
3588534 AATTTAAATCT-TG-GACTTTCATTTTCCTGACTCGTGCCTTGTAAATTTCGA-
127 GGTTT-AATCTCAGTCATTTTCATTTT-TTGACTCATG-GTT-T-AATCTC-AC
* * ** * * * *
3588585 TCAATTTTTTTATTTTTTTGACTCGGTCATTTAATCTCAGACTTTTTCATTTTTTGACTCGTGCT
1 TC-A--TTTTCA-TTTTTTGACTC-ATGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATG-A
* * * * *
3588650 TTTAATTTCAGTCATTTTCATTTTTTGACTCGTAATTTAAT-TCCTGTAATTTTCATTATTGTTT
60 TTTAATTTCAATCATTTTTATTTTCTGACTCGTGATTTAATCT-C-GTCA-TTT--TTATT-TTT
* * * * * * ***
3588714 TCATTTTCTAACCCTTGGTTTAATCT-TGATCATTTTCATTTTCTGACTCGTGATTTAATCTTGG
119 TGA----CT-A---GTGGTTTAATCTCAG-TCATTTTCATTTTTTGACTCATGGTTTAATCTCAC
* *** * ** * *
3588778 TCGTTTTCATTTTCAAAC-CTATGGTTTAATC-CTGGTTGTTTTCATTTTTTGACCCATGGTTTA
1 TCATTTTCATTTTTTGACTC-ATGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGATTTA
* * * * * * * * *
3588841 ATCT-AGGTCCTTTTTATTTTCTGACTCATGGTTTAATCTCAATCGTTTTTATTTTTCT-AATTG
64 ATTTCA-ATCATTTTTATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATTTTT-TGACTAG
* * * * * *
3588904 TGATTTAATCT-TGATCATTTTGATTTTTTTGACTCGTGATTTAAT-TCCC
126 TGGTTTAATCTCAG-TCATTTTCA-TTTTTTGACTCATGGTTTAATCTCAC
* * * * * ** * * *
3588953 ATCATTTTCATTTTCTAACTCGTGATTTAAT-TCCGGTCATTTTTGTTTCTCTGACTCGTGGTTT
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCT-CAGTCATTTTCATTT-TTTGACTCATGATTT
* * ** ** * * * * * * *
3589017 AATTCCCATTGTCGTCATTTTCTAACTCATGATTTAATCCCAATCTTTTTTCATTTTTTGACCAG
63 AATTTCAATCATTTTTATTTTCTGACTCGTGATTTAATCTC-GTCATTTTT-ATTTTTTGACTAG
* * * * * * *
3589082 TGGTTTCATCTC-GATCGTTTTCATTTTCTGACTCGTGGTTTAAACCCAG
126 TGGTTTAATCTCAG-TCATTTTCATTTTTTGACTCATGGTTTAATCTCAC
* * * * * ** * *
3589131 TCATTTTAAGTTTTAGACTCATGATTTAATTTTGGTCATTTTTATTTTTTGACTCATGATTTGAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGATTTAAT
* * ** * * * * * * *
3589196 TCCGATTGTTTTTGCTTTT-TGACTAGTGGTTTAATCCCTGTTATCTTCATTTTTTGACTCA-TG
66 TTCAATCATTTTT-ATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATTTTTTGACT-AGTG
* ** * * * **
3589259 GTTTAATCCCAACCATTTCTTATTTTTTGACT-AGTGGTTTCATTTCGG
128 GTTTAATCTCAGTCATTT-TCATTTTTTGACTCA-TGGTTTAATCTCAC
* * * * * * * * **
3589307 TCGTTTTCATTTTTT-ACCTCGTGGTTTAGTCCCTA-TCGTTTTAATTTTCTAACTCATGGCTTA
1 TCATTTTCATTTTTTGA-CTCATGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGATTTA
** ** * * * * * *** *
3589370 ATCCCTGTCATTTTTAGTTTT-AGACTCATGATATAATTTTGGTCATTTTTATTTTCAAACTCGT
64 ATTTCAATCATTTTTA-TTTTCTGACTCGTGATTTAA-TCTCGTCATTTTTATTTTTTGACTAGT
* * * ** **
3589434 GATTTGAT-TCCAGCCATTTTTGTTTTTTGACT-AGTGGTTTAATC-CTGG
127 GGTTTAATCT-CAGTCATTTTCATTTTTTGACTCA-TGGTTTAATCTC-AC
* * * * * * **
3589482 TCATTTTC-TTTTTCTGACTTATGATTTGATTTC-GATCGTTTTAATTTCTTTGACTTGTGATTT
1 TCATTTTCATTTTT-TGACTCATGGTTTAATCTCAG-TCATTTTCATTT-TTTGACTCATGATTT
** ** * * * * * * *
3589545 AATGCCTGTCATTTTCATTTTTTGACTCGTCATTTAATTTCAGTCATTTTCATTTTCTGACTTGT
63 AATTTCAATCATTTTTATTTTCTGACTCGTGATTTAATCTC-GTCATTTTTATTTTTTGACTAGT
** * * * *
3589610 GGTTTAATCTTGGTC-TTTTCACTTTTTGACTTATGGTTTAATCCCTAT
127 GGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTC-AC
* * * * *
3589658 TC-TTTTACATTTTTTGACTCGTGTTTTAATCCCTGTCATTTTCATTTTTTGA-TGCATTATTTA
1 TCATTTT-CATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCATTTTTTGACT-CATGATTTA
** ** * * * * *
3589721 ATCCCTGTCATTTTTATTTTTTGACTTGTTATTTAATTCTAGTCATTTTTTATTTTTTGACTTGT
64 ATTTCAATCATTTTTATTTTCTGACTCGTGATTTAA-TCTCGTCA-TTTTTATTTTTTGACTAGT
** * * ** ** * *
3589786 GGTAGAATCCCAATTGTTTTTCATTTCCTGACTCATCGTTTAATCCCGA-
127 GGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGGTTTAATCTC-AC
** * * * ** * * * * *
3589835 TCGCTTTCATTTTCTGACTTATGGTTTAATC-CTGGTGGTTTTCATTTTCTCACTCAGGGTTTAG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGATTTAA
** * * * * * * * *
3589899 TCCCAATCATTTTCATTTTCTGACTCAT-ACTTTAATTTTGGTCATTTTCATTTTTTAAATAGCG
65 TTTCAATCATTTTTATTTTCTGACTCGTGA-TTTAA-TCTCGTCATTTTTATTTTTTGACTAGTG
* ** * ** * *
3589963 TTTTAATCTTGGTCATTTTCATGTTTTGACTCGTAATATAATTTTGATAATATTCATTA
128 GTTTAATCTCAGTCATTTTCATTTTTTGACTC-----AT--GGTT--TAAT-CTCA--C
* * ** * ** * *
3590022 TCATTTTCGTTTTCTGACTCATGGTTTAATAACAATCGCTTTCATTTTCTAACTCATGATTTAAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGATTTAAT
* * * * * * * *
3590087 TTCAGTCATTTTTATTTCTCTGGCTTGTGATTTAATATCGATCATTTTCATTTTCTGACTTGTGA
66 TTCAATCATTTTTATTT-TCTGACTCGTGATTTAATCTCG-TCATTTTTATTTTTTGACTAGTGG
* * * *
3590152 TTTAATCT-AGGTCATTTTCATTTTCTAACCCATGGTTTAATC-CTAT
129 TTTAATCTCA-GTCATTTTCATTTTTTGACTCATGGTTTAATCTC-AC
* * * * ** * *
3590198 TCATTTTCATTTTTTGACCCATGGTTTAATCTC-GACCATTTTTATTTTCT-ATCTTGTGGTTTT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCAG-TCATTTTCATTTTTTGA-CTCATGATTTA
** * * * * ** * * *
3590261 ATCTT-GGTCACTTTTATCTTCTAACTCGTGATTTAATCTTGGTTGTTTTCATTTTCTGACCA-T
64 AT-TTCAATCATTTTTATTTTCTGACTCGTGATTTAATC-TCGTCATTTTTATTTTTTGACTAGT
* * * **
3590324 GGTTTAAT-TCTAGTCATTTTTATTTCTCTGATTGGTGGTTTAATC-CTATTGTC
127 GGTTTAATCTC-AGTCATTTTCATTT-TTTGACTCATGGTTTAATCTC-A----C
* * ** * * * * *
3590377 TTCATCGTTTTTCATTTTCTAACTGGTGGTTTCATCT-AGGTTATTTTCATTTTCTGACTCGTGG
1 -TCA----TTTTCATTTTTTGACTCATGGTTTAATCTCA-GTCATTTTCATTTTTTGACTCATGA
** * * * * * * **
3590441 TTTAATCCCTATCATTTTAATTTT-TGGACTCATTG-TTT-ATCCTAGTCATTTTCAATTTTAAA
60 TTTAATTTCAATCATTTTTATTTTCT-GACTC-GTGATTTAAT-CTCGTCATTTTTATTTTTTGA
* * * * ** * * * *
3590503 ATCGTGATTTAATTTTGGTAATTTTCATTTTTTGACT-AGTGATTTGAT-TCCAG
122 CTAGTGGTTTAATCTCAGTCATTTTCATTTTTTGACTCA-TGGTTTAATCT-CAC
* * * *
3590556 TCATTCTCGATTTTTT-ACT-AGTGGTTTAAT-TCTGGTAATTTTCATTTTTTGACTCATCATTT
1 TCATTTTC-ATTTTTTGACTCA-TGGTTTAATCTC-AGTCATTTTCATTTTTTGACTCATGATTT
** * * * * *
3590618 AA-TTCTGGTCATTTTTATTTTCTGACTCAT-AGTTTAATCTTGGTCATTTTCACTTTTTGACTT
63 AATTTC-AATCATTTTTATTTTCTGACTCGTGA-TTTAATC-TCGTCATTTTTATTTTTTGACTA
** * ** * **
3590681 GTGGTTTAATC-CATGTTGTTTTACATTTTCTGACTCATACTTTAATCCCTG
125 GTGGTTTAATCTCA-GTCATTTT-CATTTTTTGACTCATGGTTTAATCTCAC
3590732 TCATTTTCATTTTTTGA
1 TCATTTTCATTTTTTGA
3590749 TGTGTTATTT
Statistics
Matches: 6021, Mismatches: 1608, Indels: 1113
0.69 0.18 0.13
Matches are distributed among these distances:
161 19 0.00
162 28 0.00
163 2 0.00
164 3 0.00
165 1 0.00
166 5 0.00
167 41 0.01
168 74 0.01
169 5 0.00
170 4 0.00
171 10 0.00
172 103 0.02
173 213 0.04
174 586 0.10
175 1227 0.20
176 1616 0.27
177 735 0.12
178 107 0.02
179 18 0.00
180 22 0.00
181 10 0.00
182 42 0.01
183 112 0.02
184 224 0.04
185 66 0.01
186 87 0.01
187 213 0.04
188 231 0.04
189 56 0.01
190 9 0.00
191 4 0.00
192 1 0.00
193 11 0.00
194 1 0.00
195 9 0.00
196 13 0.00
197 13 0.00
198 77 0.01
199 20 0.00
200 2 0.00
201 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.52
Consensus pattern (174 bp):
TCATTTTCATTTTTTGACTCATGGTTTAATCTCAGTCATTTTCATTTTTTGACTCATGATTTAAT
TTCAATCATTTTTATTTTCTGACTCGTGATTTAATCTCGTCATTTTTATTTTTTGACTAGTGGTT
TAATCTCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTCAC
Found at i:3583633 original size:47 final size:47
Alignment explanation
Indices: 3583545--3583636 Score: 112
Period size: 47 Copynumber: 2.0 Consensus size: 47
3583535 TAATCCCAAC
* * *
3583545 CATTTTCATTTTCTGACTCATAATTTAATTTTGATAATTTTCATTAT
1 CATTTTCATTTTCTAACTCATAATTTAATCTCGATAATTTTCATTAT
* ** **
3583592 CATTTTCATTTTCTAACTCGTGGTTTAATCTCGATTGTTTTCATT
1 CATTTTCATTTTCTAACTCATAATTTAATCTCGATAATTTTCATT
3583637 TTTTGACTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 37 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (47 bp):
CATTTTCATTTTCTAACTCATAATTTAATCTCGATAATTTTCATTAT
Found at i:3584840 original size:71 final size:70
Alignment explanation
Indices: 3584701--3584855 Score: 170
Period size: 71 Copynumber: 2.2 Consensus size: 70
3584691 TTTGATTTTG
* * * * * *
3584701 GTCATTTTCATTTTTTGAGTTATGGTTTAATTCTGGTCATTTTCATCTTTTGACTCGTGATTTGA
1 GTCATTTTCATTTTTTGACTTATGATTTAATGCTAGTCATTTTCATCTTTTGACTCGTCATTTAA
3584766 TTTCA
66 TTTCA
* * * *
3584771 GTCATTTTTATTTCTTTGACTTGTGATTTAATGCTAGTCATTTTCAT-TTTTGGAGTTGTCATTT
1 GTCATTTTCATTT-TTTGACTTATGATTTAATGCTAGTCATTTTCATCTTTT-GACTCGTCATTT
3584835 AATTTC-
64 AATTTCA
*
3584841 GATCGTTTTCATTTT
1 G-TCATTTTCATTTT
3584856 CTAACTCACG
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
70 18 0.26
71 52 0.74
ACGTcount: A:0.17, C:0.12, G:0.15, T:0.55
Consensus pattern (70 bp):
GTCATTTTCATTTTTTGACTTATGATTTAATGCTAGTCATTTTCATCTTTTGACTCGTCATTTAA
TTTCA
Found at i:3585185 original size:22 final size:22
Alignment explanation
Indices: 3585157--3585198 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
3585147 TAGTCCCAGT
*
3585157 CATTTTCATTTTTTGACTCACA
1 CATTTTCATTTTTTAACTCACA
3585179 CATTTTCATTTTTTAACTCA
1 CATTTTCATTTTTTAACTCA
3585199 TGTTTTAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.21, G:0.02, T:0.52
Consensus pattern (22 bp):
CATTTTCATTTTTTAACTCACA
Found at i:3586038 original size:141 final size:141
Alignment explanation
Indices: 3585769--3586040 Score: 303
Period size: 141 Copynumber: 1.9 Consensus size: 141
3585759 TCAGTTTTAA
** * * * * * *
3585769 ACTCATGACTTAATTTTGGTCATTTTTATTTTCTGACTCATGATTTGATTTTGGTCATTTTCGTT
1 ACTCATGACTTAATGCTGGTCATTTTCATTTTCTGACTCATGATTTAATTTCGATCACTTTCATT
* * * * *
3585834 TTTTGACTAGTGGCTTAATCCTAGTCATTTTCATTTTTTGACTCGTGATTTGATTCCAATTGTTT
66 TTCTGACTAGTGACTTAATCCTAGTCATTTTCACTTTTTGACTCGTGATTTAATACCAATTGTTT
3585899 TTGTTTCTTTG
131 TTGTTTCTTTG
* * * *
3585910 ACTCATGATTTAATGCTGGTCATTTTCATTTTTTGACTCGTTATTTAATTTCGATCACTTTCATT
1 ACTCATGACTTAATGCTGGTCATTTTCATTTTCTGACTCATGATTTAATTTCGATCACTTTCATT
* * * * * * **
3585975 TTCTGACTCA-TGATTTAATCTTTGTCATTTTCACTTTTTGGCTTGTGGTTTAATACCTGTTGTT
66 TTCTGACT-AGTGACTTAATCCTAGTCATTTTCACTTTTTGACTCGTGATTTAATACCAATTGTT
3586039 TT
130 TT
3586041 ACATTTTCTG
Statistics
Matches: 105, Mismatches: 25, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
141 104 0.99
142 1 0.01
ACGTcount: A:0.18, C:0.15, G:0.14, T:0.53
Consensus pattern (141 bp):
ACTCATGACTTAATGCTGGTCATTTTCATTTTCTGACTCATGATTTAATTTCGATCACTTTCATT
TTCTGACTAGTGACTTAATCCTAGTCATTTTCACTTTTTGACTCGTGATTTAATACCAATTGTTT
TTGTTTCTTTG
Found at i:3586053 original size:141 final size:141
Alignment explanation
Indices: 3585908--3586231 Score: 332
Period size: 141 Copynumber: 2.3 Consensus size: 141
3585898 TTTGTTTCTT
* * * * **
3585908 TGACTCATGATTTAATGCTGGTCATTTTCATTTTTTGACTCGTTATTTAATTTC-GATCACTTTC
1 TGACTTATGATTTAATCCTGATCATTTTCATTTTTTGACTCATTATTTAATCCCTG-TCACTTTC
* * ** * *
3585972 ATTTTCTGACTCATGATTTAATCTTTG-TCATTTTCACTTTTTGGCTTGTGGTTTAATACCTG-T
65 ATTTTCTGACTCATGATTTAAT-TCTGATCATTTTCACTTTTTGACTCATAGTATAAT-CCTGAT
3586035 TGTTTTACATTTTC
128 TGTTTTACATTTTC
* * * * * * *
3586049 TGACTTGTGCTTTAATCCCT-ATCATTTTCATTTTCTAACGCATTATTTAATCCCTGTCATTTTT
1 TGACTTATGATTTAAT-CCTGATCATTTTCATTTTTTGACTCATTATTTAATCCCTGTCACTTTC
* ** *
3586113 ATTTTTTGACTCATGATTTAATTCTGATTGTTTTCATTTTTTGACTCATAGTATAATCCTGATTG
65 ATTTTCTGACTCATGATTTAATTCTGATCATTTTCACTTTTTGACTCATAGTATAATCCTGATTG
*
3586178 TTTTTCATTTTC
130 TTTTACATTTTC
* * **
3586190 TGACTTATCATTTAATCCCGATCGCTTTCATTTTTTGACTCA
1 TGACTTATGATTTAATCCTGATCATTTTCATTTTTTGACTCA
3586232 AGGTTTAATC
Statistics
Matches: 145, Mismatches: 33, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
140 9 0.06
141 133 0.92
142 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.52
Consensus pattern (141 bp):
TGACTTATGATTTAATCCTGATCATTTTCATTTTTTGACTCATTATTTAATCCCTGTCACTTTCA
TTTTCTGACTCATGATTTAATTCTGATCATTTTCACTTTTTGACTCATAGTATAATCCTGATTGT
TTTACATTTTC
Found at i:3586617 original size:104 final size:105
Alignment explanation
Indices: 3586500--3586705 Score: 292
Period size: 104 Copynumber: 2.0 Consensus size: 105
3586490 TTTAATAGCG
* *
3586500 GTCATTTTCATTTTCTTG-CTCATGATTTAATCTTGGTCATTTTCAGTTTCTAACCCATGGTTTA
1 GTCATTTTCATTTTC-TGACTCATGATTTAATCTCGATCATTTTCAGTTTCTAACCCATGGTTTA
*
3586564 A-T-CCAGTCATTTTCATTTTTTGACCCATGGTTTAATCTAA
65 ATTCCCA-TCATTTTCATTTTCTGACCCATGGTTTAATCTAA
* * * * *
3586604 GTCATTTTTATTTTCTGACTCATGATTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAA
1 GTCATTTTCATTTTCTGACTCATGATTTAATCTCGATCATTTTCAGTTTCTAACCCATGGTTTAA
*
3586669 TTCCCATCATTTTCATTTTCTGACTCATGGTTTAATC
66 TTCCCATCATTTTCATTTTCTGACCCATGGTTTAATC
3586706 CTGGTTATTT
Statistics
Matches: 90, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
103 2 0.02
104 55 0.61
105 30 0.33
106 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.50
Consensus pattern (105 bp):
GTCATTTTCATTTTCTGACTCATGATTTAATCTCGATCATTTTCAGTTTCTAACCCATGGTTTAA
TTCCCATCATTTTCATTTTCTGACCCATGGTTTAATCTAA
Found at i:3586668 original size:139 final size:140
Alignment explanation
Indices: 3586416--3586706 Score: 347
Period size: 139 Copynumber: 2.1 Consensus size: 140
3586406 TTTTAACTTG
* ** *
3586416 TGGTTTAATCTCAATCATTTTCATTTTCTGACTCATGATTTAATTTTGATCATTTTTATTTCTGT
1 TGGTTTAATC-CAATCATTTTCATTTTCTGACCCATGATTTAATTAAGATCATTTTTATTTCTCT
** * ***
3586481 GGTTCATGATTTAATAGCGGTCATTTTCATTTTCTTGCTCATGATTTAA-TCTTGGTCATTTTCA
65 GACTCATGATTTAATAGCGATCATTTTCATTTTCTTGCTCATGATTTAATTC-CCATCATTTTCA
3586545 GTTTCTAACCCA
129 GTTTCTAACCCA
* * *
3586557 TGGTTTAATCCAGTCATTTTCATTTTTTGACCCATGGTTTAATCTAAG-TCATTTTTATTT-TCT
1 TGGTTTAATCCAATCATTTTCATTTTCTGACCCATGATTTAAT-TAAGATCATTTTTATTTCTCT
** *
3586620 GACTCATGATTTAATCTCGATCATTTTCATTTT-TTGACTCATGGTTTAATTCCCATCATTTTCA
65 GACTCATGATTTAATAGCGATCATTTTCATTTTCTTG-CTCATGATTTAATTCCCATCATTTTCA
* * *
3586684 TTTTCTGACTCA
129 GTTTCTAACCCA
3586696 TGGTTTAATCC
1 TGGTTTAATCC
3586707 TGGTTATTTT
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
138 3 0.02
139 70 0.55
140 43 0.34
141 12 0.09
ACGTcount: A:0.21, C:0.18, G:0.11, T:0.50
Consensus pattern (140 bp):
TGGTTTAATCCAATCATTTTCATTTTCTGACCCATGATTTAATTAAGATCATTTTTATTTCTCTG
ACTCATGATTTAATAGCGATCATTTTCATTTTCTTGCTCATGATTTAATTCCCATCATTTTCAGT
TTCTAACCCA
Found at i:3586755 original size:71 final size:71
Alignment explanation
Indices: 3586613--3586855 Score: 283
Period size: 77 Copynumber: 3.4 Consensus size: 71
3586603 AGTCATTTTT
* * * * * * *
3586613 ATTTTCTGACTCATGATTTAAT-CTCGATCATTTTCATTT-TTTGACTCATGGTTTAATTCCCAT
1 ATTTTCTGACTCATGGTTTAATCCT-GGTCATTTTTATTTCTCTAACTCGTGGTTTAATCCCCAT
** *
3586676 CATTTTC
65 TGTCTTC
* *
3586683 ATTTTCTGACTCATGGTTTAATCCTGGTTATTTTTATTTCTCTAAGTCGTGGTTTAATCCCCATT
1 ATTTTCTGACTCATGGTTTAATCCTGGTCATTTTTATTTCTCTAACTCGTGGTTTAATCCCCATT
3586748 GTCTTC
66 GTCTTC
* *
3586754 ATTTTTTGATTCTGACTCATGGTTTAATTCTGGTCATTTTTATTTCTCTAATTCGTGGTTTAATC
1 A----TT--TTCTGACTCATGGTTTAATCCTGGTCATTTTTATTTCTCTAACTCGTGGTTTAATC
3586819 CCCATTGTCTTC
60 CCCATTGTCTTC
3586831 ATTTTCTGACTCATGGTTTAATCCT
1 ATTTTCTGACTCATGGTTTAATCCT
3586856 AATCGTTTTT
Statistics
Matches: 149, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
70 32 0.21
71 47 0.32
73 2 0.01
75 2 0.01
77 66 0.44
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.50
Consensus pattern (71 bp):
ATTTTCTGACTCATGGTTTAATCCTGGTCATTTTTATTTCTCTAACTCGTGGTTTAATCCCCATT
GTCTTC
Found at i:3586759 original size:105 final size:104
Alignment explanation
Indices: 3586500--3586762 Score: 251
Period size: 104 Copynumber: 2.5 Consensus size: 104
3586490 TTTAATAGCG
* ** **** * * * * *
3586500 GTCATTTTCATTTTCTTGCTCATGATTTAATCTTGGTCATTTTCAGTTTCTAACCCATGGTTTAA
1 GTCATTTTTATTTTCTAACTCATGATTTAATCCCCATCATCTTCATTTTTTGACTCATGGTTTAA
*
3586565 TCCAGTCATTTTCATTTTTTGACCCATGGTTTAATCTAA
66 TCCAGTCATTTTCATTTTCTGACCCATGGTTTAATCTAA
* * * *
3586604 GTCATTTTTATTTTCTGACTCATGATTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAA
1 GTCATTTTTATTTTCTAACTCATGATTTAATCCCCATCATCTTCATTTTTTGACTCATGGTTTAA
* *
3586669 TTCCCA-TCATTTTCATTTTCTGACTCATGGTTTAATCCT-G
66 -T-CCAGTCATTTTCATTTTCTGACCCATGGTTTAAT-CTAA
* * * * **
3586709 GTTATTTTTATTTCTCTAAGTCGTGGTTTAATCCCCATTGTCTTCATTTTTTGA
1 GTCATTTTTATTT-TCTAACTCATGATTTAATCCCCATCATCTTCATTTTTTGA
3586763 TTCTGACTCA
Statistics
Matches: 133, Mismatches: 22, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
104 56 0.42
105 41 0.31
106 36 0.27
ACGTcount: A:0.20, C:0.19, G:0.11, T:0.50
Consensus pattern (104 bp):
GTCATTTTTATTTTCTAACTCATGATTTAATCCCCATCATCTTCATTTTTTGACTCATGGTTTAA
TCCAGTCATTTTCATTTTCTGACCCATGGTTTAATCTAA
Found at i:3587250 original size:141 final size:140
Alignment explanation
Indices: 3587033--3587361 Score: 414
Period size: 141 Copynumber: 2.3 Consensus size: 140
3587023 TTGATTTTGG
* * * * *
3587033 TCATTTTCATTTTTTGACT-AGTGGTTTAAT-CTGATCATTTTCATTTTTTGACTCGTTGCTTAA
1 TCATTTTCATTTTTTGACTCA-TGCTTTAATCCCGATCGTTTTCATTTTTCGACACGTTGCTTAA
** *
3587096 TTTTGATCATTTTTATTTTTTGACTTGCGATTTAATCTCAATCATTTTCACTTTTTGACTTGTGG
65 TCCTGATCATTTTTATTTTTTGACTTGCGATTTAATCCCAATCATTTTCACTTTTTGACTTGTGG
* *
3587161 TTTAATCCCTA
130 TATAATCCCGA
** *
3587172 TTGTTTTACATTTTTTGACTCATGCTTTAATCCCGATCGTTTTCATTTTTCGACACGTTGTTTAA
1 TCATTTT-CATTTTTTGACTCATGCTTTAATCCCGATCGTTTTCATTTTTCGACACGTTGCTTAA
* * * *
3587237 TGCCT-ATCTTTTTTATTTTTTGACTTGTGATTTAATCCCGATCATTTTCATTTTTTGACTTGTG
65 T-CCTGATCATTTTTATTTTTTGACTTGCGATTTAATCCCAATCATTTTCACTTTTTGACTTGTG
*
3587301 GTATAATCTCGA
129 GTATAATCCCGA
*
3587313 TCATTTTTCATTTTTTGACTCAT-CGTTTAATCCCGATCGCTTTCATTTT
1 TCA-TTTTCATTTTTTGACTCATGC-TTTAATCCCGATCGTTTTCATTTT
3587362 CTAACTCATG
Statistics
Matches: 163, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
139 5 0.03
140 21 0.13
141 132 0.81
142 5 0.03
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.53
Consensus pattern (140 bp):
TCATTTTCATTTTTTGACTCATGCTTTAATCCCGATCGTTTTCATTTTTCGACACGTTGCTTAAT
CCTGATCATTTTTATTTTTTGACTTGCGATTTAATCCCAATCATTTTCACTTTTTGACTTGTGGT
ATAATCCCGA
Found at i:3587391 original size:71 final size:69
Alignment explanation
Indices: 3587036--3587391 Score: 258
Period size: 71 Copynumber: 5.1 Consensus size: 69
3587026 ATTTTGGTCA
* * * * * **
3587036 TTTTCATTTTTTGACT-AGTGGTTTAAT-CTGATCATTTTCATTTTTTGACTCGTTGCTTAATTT
1 TTTTCATTTTTTGACTCA-TGATTTAATCCCGATCGTTTTCA-TTTTTGACTCGTGGTTTAATCC
*
3587099 TGATCAT
64 TGAT-GT
*** * * * *
3587106 TTTT-ATTTTTTGACTTGCGATTTAATCTCAATCATTTTCACTTTTTGACTTGTGGTTTAATCCC
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCGTTTTCA-TTTTTGACTCGTGGTTTAAT-CC
3587170 T-ATTGT
64 TGA-TGT
* * * *
3587176 TTTACATTTTTTGACTCATGCTTTAATCCCGATCGTTTTCATTTTTCGACACGTTGTTTAATGCC
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCGTTTTCATTTTT-GACTCGTGGTTTAAT-CC
*
3587241 T-ATCT
64 TGATGT
* ** * * *
3587246 TTTTTATTTTTTGACTTGTGATTTAATCCCGATCATTTTCATTTTTTGACTTGTGGTATAAT-CT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCGTTTTCA-TTTTTGACTCGTGGTTTAATCCT
*
3587310 CGATCAT
65 -GAT-GT
* * *
3587317 TTTTCATTTTTTGACTCATCG-TTTAATCCCGATCGCTTTCATTTTCTAACTCATGGTTTAATCC
1 TTTTCATTTTTTGACTCAT-GATTTAATCCCGATCGTTTTCATTTT-TGACTCGTGGTTTAATCC
*
3587381 TGGTGGT
64 TGAT-GT
3587388 TTTT
1 TTTT
3587392 ATTCTCATTT
Statistics
Matches: 224, Mismatches: 49, Indels: 25
0.75 0.16 0.08
Matches are distributed among these distances:
68 2 0.01
69 18 0.08
70 95 0.42
71 106 0.47
72 3 0.01
ACGTcount: A:0.18, C:0.17, G:0.12, T:0.53
Consensus pattern (69 bp):
TTTTCATTTTTTGACTCATGATTTAATCCCGATCGTTTTCATTTTTGACTCGTGGTTTAATCCTG
ATGT
Found at i:3588143 original size:105 final size:104
Alignment explanation
Indices: 3587698--3590833 Score: 473
Period size: 105 Copynumber: 29.4 Consensus size: 104
3587688 TAACCCATGG
* *
3587698 TTTAATCTCGGTCATTTTCATTTTCTAACCCATGGTTTAAT-TCAGGTCATTTTTATTTTCTGAC
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTCA-GTCATTTTCATTTT-TGAC
*
3587762 TCATGATTTAATTGT-GGTCATTTTTATTTTTTGA-TTCGTGA
64 TCGTGATTTAATT-TCGGTCATTTTTATTTTTTGACTT-GTGA
* * * * *
3587803 TTTAATCTCGGTCATTTTCATTTTTTGACTCGTGGCTTAATTCCCA-TCATTTTCATTTTTTGAC
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAA-TCTCAGTCATTTTCA-TTTTTGAC
* *
3587867 TCGTGATTTAATTTTGGTCATTTTTATTTCTTTGACTTGTGG
64 TCGTGATTTAATTTCGGTCATTTTTATTT-TTTGACTTGTGA
* ** * * * ** * *
3587909 TTTAATCTCCGTTGTCTTCATTTTCTAACTCAAGGTTAAAT-TGTGATCGTTTTTCATTTTCTGG
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTCAG-TC-ATTTTCATTTT-TGA
* * * * * * * *
3587973 CTAGTGGTTTCATTTCGATCATTTTCATTTTCTGACTCGTGG
63 CTCGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGA
** * * * * *
3588015 TTTAATCTTTGTCATTTTAATTTTCCAACTCAAGGTTTAATCCCAGTCATTTTCAGTTTTAGACT
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTCAGTCATTTTCA-TTTTTGACT
* **
3588080 TGTGATTTAATTTCGACCATTTTTATTTTTTGACTTGTGA
65 CGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGA
* * * * *
3588120 TTTGATTTCGGTCGTTTTCATTTTTTCACT-ACTGGTTTAATCTC-GATCATTTTCATGTTTTGA
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCA-TGGTTTAATCTCAG-TCATTTTCAT-TTTTGA
* ** *
3588183 CTTGTGATTCGATTTCGGTCATTTTTATTTCTTTGATTTGTGA
63 CTCGTGATTTAATTTCGGTCATTTTTATTT-TTTGACTTGTGA
** * * * ** * * *
3588226 TTTAATGC-CAATCATTTTCATTTTTTGACTCGTTATTTAATTTAAGTCGTTTTCATTTTTTTGA
1 TTTAAT-CTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTCAGTCATTTTCA--TTTTTGA
* * * * * * *
3588290 TTCGCGATTTAATCTCAGTTATTTTCACTTTTTGACTTGT-A
63 CTCGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGA
* * ** * * * **
3588331 GTTT-A--------ATTTTCATTTTTTGACTTGTAGTTTAATCCCTGTTGTTTTACACTTTTTGA
1 -TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTCAGTCATTTT-CA-TTTTTGA
* * ** * * * * *
3588387 CTAGTGCTTTAATCCCTGTCCTTTTCATTTTTTAACGCAT-TG-
63 CTCGTGATTTAATTTCGGTCATTTTTATTTTTTGA--CTTGTGA
* * * * * * * *
3588429 TTTAATC-CCGTCATTGTTTATTTTTTGACTCGTGATTTAATCCCAGTCATTTTCATTTTTTAAC
1 TTTAATCTCGGTCATT-TTCATTTTCTAACTCATGGTTTAATCTCAGTCATTTTCA-TTTTTGAC
* *** ** * * * *
3588493 TTGTGGCATAATCCCAGTCATTTTTTATTTTTCGACTCGTCAA
64 TCGTGATTTAATTTCGGTCA-TTTTTATTTTTTGACTTGT-GA
* * * * * * *
3588536 TTTAAATCTTGG--ACTTTCATTTTCCTGACTCGTGCCTTGTAAATTTC-GATCAATTTTTTTAT
1 TTT-AATCTCGGTCATTTTCATTTT-CTAACTCATG-GTT-T-AATCTCAG-TC-A--TTTTCA-
* * * * * *
3588598 TTTTTTGACTCGGTCATTTAATCTCAGAC-TTTTTCATTTTTTGACTCGTGCT
56 -TTTTTGACTC-GTGATTTAATTTCGGTCATTTTT-ATTTTTTGACTTGTG-A
* * * * * ** * *
3588650 TTTAATTTCAGTCATTTTCATTTTTTGACTCGTAATTTAATTCCTGTAATTTTCATTATTGTTTT
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAA-T-C--TCA--GTC---A---TTTT
* * * * * * * *
3588715 CATTTTCTAACCCTTGGTTTAATCTT-GATCATTTTCATTTTCTGACTCGTGA
54 CATTTT-TGACTCGTGATTTAAT-TTCGGTCATTTTTATTTTTTGACTTGTGA
* * * * **
3588767 TTTAATCTTGGTCGTTTTCATTTTCAAAC-CTATGGTTTAATC-CTGGTTGTTTTCATTTTTTGA
1 TTTAATCTCGGTCATTTTCATTTTCTAACTC-ATGGTTTAATCTC-AGTCATTTTCA-TTTTTGA
* * * * * * * ** *
3588830 CCCATGGTTTAATCTAGGTCCTTTTTATTTTCTGACTCATGG
63 CTCGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGA
** * * ** * * *
3588872 TTTAATCTCAATCGTTTTTATTTTTCTAA-TTGTGATTTAATCT-TGATCATTTTGATTTTTTTG
1 TTTAATCTCGGTCATTTTCA-TTTTCTAACTCATGGTTTAATCTCAG-TCATTTTCA--TTTTTG
* ** * * * *
3588935 ACTCGTGATTTAATTCCCATCATTTTCATTTTCTAACTCGTGA
62 ACTCGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGA
** * * *
3588978 TTTAAT-TCCGGTCATTTTTGTTTCTCTGACTCGTGGTTTAAT-TC--CCATTGTCGTCATTTTC
1 TTTAATCT-CGGTCATTTTCATTT-TCTAACTCATGGTTTAATCTCAGTCATT-T--TCATTTT-
* * ** ** * ** *
3589039 TAACTCATGATTTAATCCCAATCTTTTTTCATTTTTTGACCAGTGG
60 TGACTCGTGATTTAATTTCGGTCATTTTT-ATTTTTTGACTTGTGA
* * * * * * * * *
3589085 TTTCATCTCGATCGTTTTCATTTTCTGACTCGTGGTTTAAACCCAGTCATTTTAAGTTTTAGACT
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTCAGTCATTTTCA-TTTTTGACT
* * **
3589150 CATGATTTAATTTTGGTCATTTTTATTTTTTGACTCATGA
65 CGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGA
* * ** * * * * *
3589190 TTTGAT-TCCGATTGTTTTTGC-TTTT-TGACT-AGTGGTTTAATCCCTGTTATCTTCATTTTTT
1 TTTAATCT-CG-GTCATTTT-CATTTTCTAACTCA-TGGTTTAATCTCAGTCATTTTCA-TTTTT
* * ** *** * *
3589251 GACTCATGGTTTAATCCCAACCATTTCTTATTTTTTGACTAGTGG
61 GACTCGTGATTTAATTTCGGTCATTT-TTATTTTTTGACTTGTGA
* * * * * * * * * * *
3589296 TTTCATTTCGGTCGTTTTCATTTTTTACCTCGTGGTTTAGTCCCTA-TCGTTTTAATTTTCTAAC
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTC-AGTCATTTTCATTTT-TGAC
* ** ** * * * **
3589360 TCATGGCTTAATCCCTGTCATTTTTAGTTTTAGACTCATGA
64 TCGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGA
* * * * * * * * * **
3589401 TATAATTTTGGTCATTTTTATTTTCAAACTCGTGATTTGAT-TCCAGCCATTTTTGTTTTTTGAC
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCT-CAGTCA-TTTTCATTTTTGAC
* * * * *
3589465 TAGTGGTTTAA-TCCTGGTCATTTTCT-TTTTCTGACTTATGA
64 TCGTGATTTAATTTC-GGTCATTTT-TATTTTTTGACTTGTGA
* * * * * * * ** * *
3589506 TTTGATTTCGATCGTTTTAATTTCTTTGACTTGTGATTTAATGC-CTGTCATTTTCATTTTTTGA
1 TTTAATCTCGGTCATTTTCATTT-TCTAACTCATGGTTTAAT-CTCAGTCATTTTCA-TTTTTGA
* * * * *
3589570 CTCGTCATTTAATTTCAGTCATTTTCATTTTCTGACTTGTGG
63 CTCGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGA
* * * * *
3589612 TTTAATCTTGGTC-TTTTCACTTTT-TGACTTATGGTTTAATCCCTATTC-TTTTACATTTTTTG
1 TTTAATCTCGGTCATTTTCA-TTTTCTAACTCATGGTTTAATCTC-AGTCATTTT-CA-TTTTTG
* ** * * *
3589674 ACTCGTGTTTTAATCCCTGTCATTTTCATTTTTTGA--TGCATTA
62 ACTCGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTG--TGA
* * * * * ** ** *
3589717 TTTAATCCCTGTCATTTTTATTTTTTGACTTGTTATTTAAT-TCTAGTCATTTTTTATTTTTTGA
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTC-AGTCA-TTTTCA-TTTTTGA
* * ** ** ** ** ** **
3589781 CTTGTGGTAGAATCCCAATTGTTTTTCATTTCCTGACTCATCG-
63 CTCGTGATTTAATTTCGGTCATTTTT-ATTTTTTGACTTGT-GA
* * ** * * * ** *
3589824 TTTAATCCCGATCGCTTTCATTTTCTGACTTATGGTTTAATC-CTGGTGGTTTTCATTTTCTCAC
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTC-AGTCATTTTCATTTT-TGAC
* * ** ** * * **
3589888 TCAG-GGTTTAGTCCCAATCATTTTCATTTTCTGACTCAT-A
64 TC-GTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGA
* * * * **
3589928 CTTTAATTTTGGTCATTTTCATTTTTTAAAT-A-GCGTTTTAATCTTGGTCATTTTCATGTTTTG
1 -TTTAATCTCGGTCATTTTCATTTTCTAACTCATG-G-TTTAATCTCAGTCATTTTCAT-TTTTG
* * * * * ** *
3589991 ACTCGTAATATAATTTTGATAATATTCATTATCATTTTCGTTTTCTGACTCATGG
62 ACTCGTGATTTAATTTCG------GTCATT-T--TTAT--TTTT-TGACTTGTGA
** ** ** * * * *
3590046 TTTAATAACAATCGCTTTCATTTTCTAACTCATGATTTAATTTCAGTCATTTTTATTTCTCTGGC
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTCAGTCATTTTCATTT-T-TGAC
* * * * *
3590111 TTGTGATTTAATATCGATCATTTTCATTTTCTGACTTGTGA
64 TCGTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGA
* * *
3590152 TTTAATCTAGGTCATTTTCATTTTCTAACCCATGGTTTAATC-CTATTCATTTTCATTTTTTGAC
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTC-AGTCATTTTCA-TTTTTGAC
* * * * ** * *
3590216 CCATGGTTTAATCTCGACCATTTTTATTTTCT-ATCTTGTGG
64 TCGTGATTTAATTTCGGTCATTTTTATTTTTTGA-CTTGTGA
* * * * * ** **
3590257 TTTTATCTTGGTCACTTTT-ATCTTCTAACTCGTGATTTAATCTTGGTTGTTTTCATTTTCTGAC
1 TTTAATCTCGGTCA-TTTTCATTTTCTAACTCATGGTTTAATCTCAGTCATTTTCATTTT-TGAC
* * * * *
3590321 -CATGGTTTAA-TTCTAGTCATTTTTATTTCTCTGA-TTGGTGG
64 TCGTGATTTAATTTC-GGTCATTTTTATTT-TTTGACTT-GTGA
* * ** * *
3590362 TTTAATCCTATTGTCTTCATCGTTTTTCATTTTCTAACTGGTGGTTTCATCT-AGGTTATTTTCA
1 TTTAAT-C--TCG--GTCA----TTTTCATTTTCTAACTCATGGTTTAATCTCA-GTCATTTTCA
* ** ** * *
3590426 TTTTCTGACTCGTGGTTTAATCCCTATCATTTTAATTTTTGGACTCAT-TG-
56 TTTT-TGACTCGTGATTTAATTTCGGTCATTTTTATTTTTTGACT--TGTGA
* * * * * * ** *
3590476 TTT-ATC-CTAGTCATTTTCAATTTT-AAAATCGTGATTTAATTTTGGTAATTTTCATTTTTTGA
1 TTTAATCTC-GGTCATTTTC-ATTTTCTAACTCATGGTTTAATCTCAGTCATTTTCA-TTTTTGA
* * * * ** * *
3590538 CTAGTGATTTGATTCCAGTCATTCTCGATTTTTT-ACTAGTGG
63 CTCGTGATTTAATTTCGGTCATT-TTTATTTTTTGACTTGTGA
* * * ** * *
3590580 TTTAAT-TCTGGTAATTTTCATTTTTTGACTCATCATTTAAT-TCTGGTCATTTTTATTTTCTGA
1 TTTAATCTC-GGTCATTTTCATTTTCTAACTCATGGTTTAATCTC-AGTCATTTTCATTTT-TGA
* * * *
3590643 CTCAT-AGTTTAATCTT-GGTCATTTTCACTTTTTGACTTGTGG
63 CTCGTGA-TTTAAT-TTCGGTCATTTTTATTTTTTGACTTGTGA
* ** * ** * *
3590685 TTTAATC-CATGTTGTTTTACATTTTCTGACTCATACTTTAATCCCTGTCATTTTCATTTTTTGA
1 TTTAATCTC-GGTCATTTT-CATTTTCTAACTCATGGTTTAATCTCAGTCATTTTCA-TTTTTGA
** * * * *
3590749 -T-GTGTTATTTAATCCCTGTCATTTTTGTTTTTTTGACTCGAGA
63 CTCGTG--ATTTAATTTCGGTCATTTTT-ATTTTTTGACTTGTGA
** * *** * *
3590792 TGCAATCTCGATTGCTTTCATTTTCTGACTCGTGGTTTAATC
1 TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATC
3590834 CTGGTGGTTT
Statistics
Matches: 2227, Mismatches: 600, Indels: 407
0.69 0.19 0.13
Matches are distributed among these distances:
97 67 0.03
98 4 0.00
99 2 0.00
103 8 0.00
104 137 0.06
105 776 0.35
106 679 0.30
107 209 0.09
108 16 0.01
109 9 0.00
110 9 0.00
111 10 0.00
112 9 0.00
113 23 0.01
114 79 0.04
115 46 0.02
116 8 0.00
117 78 0.04
118 41 0.02
119 11 0.00
120 6 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.52
Consensus pattern (104 bp):
TTTAATCTCGGTCATTTTCATTTTCTAACTCATGGTTTAATCTCAGTCATTTTCATTTTTGACTC
GTGATTTAATTTCGGTCATTTTTATTTTTTGACTTGTGA
Found at i:3588278 original size:317 final size:316
Alignment explanation
Indices: 3587677--3588284 Score: 701
Period size: 317 Copynumber: 1.9 Consensus size: 316
3587667 TTCTTAATCG
* * * *
3587677 TTTTCATTTTCTAACCCATGGTTTAATCTCGGTCATTTTCATTTTCTAACCCATGGTTTAATTCA
1 TTTTCATTTTCTAACCCATGGTTTAATCTCGGTCATTTTAATTTTCCAACCCAAGGTTTAATCCA
* * **
3587742 GGTCATTTTTATTTTCTGACTCATGATTTAATTGTGGTCATTTTTATTTTTTGATTCGTGATTTA
66 GGTCATTTTCATTTTCAGACTCATGATTTAATTGTGACCATTTTTATTTTTTGATTCGTGATTTA
* *
3587807 ATCTCGGTCATTTTCATTTTTTGACTCGTGGCTTAATTCCCATCATTTTCATTTTTTGACTCGTG
131 ATCTCGGTCATTTTCATTTTTTCACTCGTGGCTTAATTCCCATCATTTTCATGTTTTGACTCGTG
* * * ** **
3587872 ATTTAATTTTGGTCATTTTTATTTCTTTGACTTGTGGTTTAATCTCCGTTGTCTTCATTTTCTAA
196 ATTCAATTTCGGTCATTTTTATTTCTTTGACTTGTGATTTAATCTCAATCATCTTCATTTTCTAA
* *
3587937 CTCAAGGTTAAATTGTGATCGTTTTTCATTTTCTGGCTAGTGGTTTCATTTCGATCA
261 CTCAAGATTAAATTGTAATCG-TTTTCATTTTCTGGCTAGTGGTTTCATTTCGATCA
* * * ** *
3587994 TTTTCATTTTCTGACTCGTGGTTTAATCTTTGTCATTTTAATTTTCCAACTCAAGGTTTAATCCC
1 TTTTCATTTTCTAACCCATGGTTTAATCTCGGTCATTTTAATTTTCCAACCCAAGGTTTAAT-CC
**
3588059 A-GTCATTTTCAGTTTT-AGACTTGTGATTTAATT-TCGACCATTTTTATTTTTTGACTT-GTGA
65 AGGTCATTTTCA-TTTTCAGACTCATGATTTAATTGT-GACCATTTTTATTTTTTGA-TTCGTGA
* * * * *
3588120 TTTGATTTCGGTCGTTTTCATTTTTTCACTAC-TGGTTTAA-TCTCGATCATTTTCATGTTTTGA
127 TTTAATCTCGGTCATTTTCATTTTTTCACT-CGTGGCTTAATTC-CCATCATTTTCATGTTTTGA
* * * *
3588183 CTTGTGATTCGATTTCGGTCATTTTTATTTCTTTGATTTGTGATTTAATGC-CAATCATTTTCAT
190 CTCGTGATTCAATTTCGGTCATTTTTATTTCTTTGACTTGTGATTTAAT-CTCAATCATCTTCAT
* * *** *
3588247 TTTTTGACTCGTTATTTAATT-TAAGTCGTTTTCATTTT
254 TTTCTAACTCAAGATTAAATTGTAA-TCGTTTTCATTTT
3588285 TTTGATTCGC
Statistics
Matches: 241, Mismatches: 42, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
316 15 0.06
317 216 0.90
318 10 0.04
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (316 bp):
TTTTCATTTTCTAACCCATGGTTTAATCTCGGTCATTTTAATTTTCCAACCCAAGGTTTAATCCA
GGTCATTTTCATTTTCAGACTCATGATTTAATTGTGACCATTTTTATTTTTTGATTCGTGATTTA
ATCTCGGTCATTTTCATTTTTTCACTCGTGGCTTAATTCCCATCATTTTCATGTTTTGACTCGTG
ATTCAATTTCGGTCATTTTTATTTCTTTGACTTGTGATTTAATCTCAATCATCTTCATTTTCTAA
CTCAAGATTAAATTGTAATCGTTTTCATTTTCTGGCTAGTGGTTTCATTTCGATCA
Found at i:3588289 original size:71 final size:71
Alignment explanation
Indices: 3588079--3588339 Score: 249
Period size: 71 Copynumber: 3.7 Consensus size: 71
3588069 AGTTTTAGAC
* * * * *
3588079 TTGTGATTTAATTTCGACCATTTTTATTTTTTGACTTGTGATTTGATTTCGGTCGTTTTCA-TTT
1 TTGTGATTTAATCTCAATCATTTTCATTTTTTGACTTGTGATTTAATTTCGGTCGTTTTCATTTT
* *
3588143 TTTCAC
66 TTTGAT
** * * * ** * * *
3588149 TACTGGTTTAATCTCGATCATTTTCATGTTTTGACTTGTGATTCGATTTCGGTCATTTTTATTTC
1 TTGTGATTTAATCTCAATCATTTTCATTTTTTGACTTGTGATTTAATTTCGGTCGTTTTCATTTT
3588214 TTTGAT
66 TTTGAT
* * **
3588220 TTGTGATTTAATGC-CAATCATTTTCATTTTTTGACTCGTTATTTAATTTAAGTCGTTTTCATTT
1 TTGTGATTTAAT-CTCAATCATTTTCATTTTTTGACTTGTGATTTAATTTCGGTCGTTTTCATTT
3588284 TTTTGAT
65 TTTTGAT
* * * * *
3588291 TCGCGATTTAATCTCAGTTATTTTCACTTTTTGACTTGT-AGTTTAATTT
1 TTGTGATTTAATCTCAATCATTTTCATTTTTTGACTTGTGA-TTTAATTT
3588340 TCATTTTTTG
Statistics
Matches: 154, Mismatches: 33, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
70 53 0.34
71 100 0.65
72 1 0.01
ACGTcount: A:0.18, C:0.13, G:0.13, T:0.55
Consensus pattern (71 bp):
TTGTGATTTAATCTCAATCATTTTCATTTTTTGACTTGTGATTTAATTTCGGTCGTTTTCATTTT
TTTGAT
Found at i:3588316 original size:317 final size:317
Alignment explanation
Indices: 3587638--3588337 Score: 670
Period size: 317 Copynumber: 2.2 Consensus size: 317
3587628 TTTAATATCG
* * * ** * * * *
3587638 ATCG-TTTTCATTTTCTGATTTA-TGATTTATTCTTAATCGTTTTCATTTTCTAACCCATGGTTT
1 ATCGTTTTTCATTTTCTGA-CTAGCGATTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTT
* * * * * *
3587701 AATCTCGGTCATTTTCATTTTCTAACCCATGGTTTAATTCAGGTCATTTTTATTTTCTGACTCAT
65 AATCTCGGTCATTTTAATTTTCCAACCCAAGGTTTAATCCAGGTCATTTTCATTTTCAGACTCAT
** *
3587766 GATTTAATTGTGGTCATTTTTATTTTTTGATTCGTGATTTAATCTCGGTCATTTTCATTTTTTGA
130 GATTTAATTGTGACCATTTTTATTTTTTGATTCGTGATTTAATCTCGGTCATTTTCATTTTTTCA
* * *
3587831 CTCGTGGCTTAATTCCCATCATTTTCATTTTTTGACTCGTGATTTAATTTTGGTCATTTTTATTT
195 CTCGTGGCTTAATTCCCATCATTTTCATGTTTTGACTCGTGATTCAATTTCGGTCATTTTTATTT
* ** ** * *
3587896 CTTTGACTTGTGGTTTAATCTCCGTTGTCTTCATTTTCTAACTCAAGGTTAAATTGTG
260 CTTTGACTTGTGATTTAATCTCAATCATCTTCATTTTCTAACTCAAGATTAAATTGTA
* * * * *
3587954 ATCGTTTTTCATTTTCTGGCTAGTGGTTTCATTTCGATCATTTTCATTTTCTGACTCGTGGTTTA
1 ATCGTTTTTCATTTTCTGACTAGCGATTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTA
** * **
3588019 ATCTTTGTCATTTTAATTTTCCAACTCAAGGTTTAATCCCA-GTCATTTTCAGTTTT-AGACTTG
66 ATCTCGGTCATTTTAATTTTCCAACCCAAGGTTTAAT-CCAGGTCATTTTCA-TTTTCAGACTCA
* * *
3588082 TGATTTAATT-TCGACCATTTTTATTTTTTGACTT-GTGATTTGATTTCGGTCGTTTTCATTTTT
129 TGATTTAATTGT-GACCATTTTTATTTTTTGA-TTCGTGATTTAATCTCGGTCATTTTCATTTTT
* * * *
3588145 TCACTAC-TGGTTTAA-TCTCGATCATTTTCATGTTTTGACTTGTGATTCGATTTCGGTCATTTT
192 TCACT-CGTGGCTTAATTC-CCATCATTTTCATGTTTTGACTCGTGATTCAATTTCGGTCATTTT
* * * * *** *
3588208 TATTTCTTTGATTTGTGATTTAATGC-CAATCATTTTCATTTTTTGACTCGTTATTTAATT-TA
255 TATTTCTTTGACTTGTGATTTAAT-CTCAATCATCTTCATTTTCTAACTCAAGATTAAATTGTA
* * * * * *
3588270 AGTCG-TTTTCATTTTTTTGATTCGCGATTTAATCTC-AGTTATTTTCACTTTT-TGACTTGTAG
1 A-TCGTTTTTCA-TTTTCTGACTAGCGATTTAATCTCGA-TCATTTTCA-TTTTCTGACTCGTGG
3588332 TTTAAT
62 TTTAAT
3588338 TTTCATTTTT
Statistics
Matches: 309, Mismatches: 62, Indels: 25
0.78 0.16 0.06
Matches are distributed among these distances:
316 18 0.06
317 277 0.90
318 14 0.05
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.53
Consensus pattern (317 bp):
ATCGTTTTTCATTTTCTGACTAGCGATTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTA
ATCTCGGTCATTTTAATTTTCCAACCCAAGGTTTAATCCAGGTCATTTTCATTTTCAGACTCATG
ATTTAATTGTGACCATTTTTATTTTTTGATTCGTGATTTAATCTCGGTCATTTTCATTTTTTCAC
TCGTGGCTTAATTCCCATCATTTTCATGTTTTGACTCGTGATTCAATTTCGGTCATTTTTATTTC
TTTGACTTGTGATTTAATCTCAATCATCTTCATTTTCTAACTCAAGATTAAATTGTA
Found at i:3588339 original size:26 final size:26
Alignment explanation
Indices: 3588310--3588363 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
3588300 AATCTCAGTT
3588310 ATTTTCACTTTTTGACTTGTAGTTTA
1 ATTTTCACTTTTTGACTTGTAGTTTA
*
3588336 ATTTTCATTTTTTGACTTGTAGTTTA
1 ATTTTCACTTTTTGACTTGTAGTTTA
3588362 AT
1 AT
3588364 CCCTGTTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.20, C:0.09, G:0.11, T:0.59
Consensus pattern (26 bp):
ATTTTCACTTTTTGACTTGTAGTTTA
Found at i:3588690 original size:71 final size:71
Alignment explanation
Indices: 3588438--3588690 Score: 210
Period size: 71 Copynumber: 3.5 Consensus size: 71
3588428 GTTTAATCCC
* * * * * * *
3588438 GTCATTGTTTATTTTTTGACTCGTGATTTAATCCCAGTCATTTTCATTTTTTAACTTGTGGC--A
1 GTCATTTTTTATTTTTTGACTCGTAATTTAATCTCAGAC-TTTTCATTTTTTGACTCGT-GCTTT
**
3588501 TAATCCCA
64 TAATTTCA
* ** *
3588509 GTCATTTTTTATTTTTCGACTCGTCAATTTAAATCTTGGAC-TTTCATTTTCCTGACTCGTGCCT
1 GTCATTTTTTATTTTTTGACTCGT-AATTT-AATCTCAGACTTTTCATTTT-TTGACTCGTG-CT
*
3588573 TGTAAATTTC-
62 T-TTAATTTCA
*
3588583 GATCAATTTTTTTATTTTTTTGACTCGGTCATTTAATCTCAGACTTTTTCATTTTTTGACTCGTG
1 G-TC-A-TTTTTTA-TTTTTTGACTC-GTAATTTAATCTCAGAC-TTTTCATTTTTTGACTCGTG
3588648 CTTTTAATTTCA
60 CTTTTAATTTCA
*
3588660 GTCA-TTTTCATTTTTTGACTCGTAATTTAAT
1 GTCATTTTTTATTTTTTGACTCGTAATTTAAT
3588691 TCCTGTAATT
Statistics
Matches: 145, Mismatches: 22, Indels: 30
0.74 0.11 0.15
Matches are distributed among these distances:
71 41 0.28
72 22 0.15
73 11 0.08
74 1 0.01
75 7 0.05
76 10 0.07
77 19 0.13
78 23 0.16
79 11 0.08
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.51
Consensus pattern (71 bp):
GTCATTTTTTATTTTTTGACTCGTAATTTAATCTCAGACTTTTCATTTTTTGACTCGTGCTTTTA
ATTTCA
Found at i:3588993 original size:71 final size:72
Alignment explanation
Indices: 3588893--3589054 Score: 188
Period size: 71 Copynumber: 2.3 Consensus size: 72
3588883 TCGTTTTTAT
* * * *
3588893 TTTTCTAA-TTGTGATTTAA-TCTTGATCA-TTTTGATTTTTTTGACTCGTGATTTAATTCCCAT
1 TTTTCTAACTCGTGATTTAATTCTCGATCATTTTTG-TTTCTCTGACTCGTGATTTAATTCCCAT
**
3588955 CATTTTCA
65 CATCGTCA
* * *
3588963 TTTTCTAACTCGTGATTTAATTC-CGGTCATTTTTGTTTCTCTGACTCGTGGTTTAATTCCCATT
1 TTTTCTAACTCGTGATTTAATTCTCGATCATTTTTGTTTCTCTGACTCGTGATTTAATTCCCATC
*
3589027 GTCGTCA
66 ATCGTCA
*
3589034 TTTTCTAACTCATGATTTAAT
1 TTTTCTAACTCGTGATTTAAT
3589055 CCCAATCTTT
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
70 8 0.10
71 63 0.81
72 7 0.09
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (72 bp):
TTTTCTAACTCGTGATTTAATTCTCGATCATTTTTGTTTCTCTGACTCGTGATTTAATTCCCATC
ATCGTCA
Found at i:3589085 original size:71 final size:70
Alignment explanation
Indices: 3588917--3589298 Score: 203
Period size: 71 Copynumber: 5.4 Consensus size: 70
3588907 TTTAATCTTG
* * ** *
3588917 ATCATTTTGATTTTTTTGACTCGTGATTTAATTCCCATCATTTTCATTTTCTAACTCGTGATTTA
1 ATCATTTTTA-TTTTTTGACTCGTGGTTTAATTCCCATCATCGTCATTTTCTAACTCATGATTTA
* *
3588982 ATTCCG
65 ATCCCA
* * * **
3588988 GTCATTTTTGTTTCTCTGACTCGTGGTTTAATTCCCATTGTCGTCATTTTCTAACTCATGATTTA
1 ATCATTTTTATTT-TTTGACTCGTGGTTTAATTCCCATCATCGTCATTTTCTAACTCATGATTTA
3589053 ATCCCA
65 ATCCCA
* * * * ** * * *
3589059 ATCTTTTTTCATTTTTTGAC-CAGTGGTTTCA-TCTCGATCGTTTTCATTTTCTGACTCGTGGTT
1 ATCATTTTT-ATTTTTTGACTC-GTGGTTTAATTC-CCATCATCGTCATTTTCTAACTCATGATT
*
3589122 TAAACCCA
63 TAATCCCA
* * * * * * **** ** * * * *
3589130 GTCATTTTAAGTTTTAGACTCATGATTTAATTTTGGTCATTTTTATTTTTTGACTCATGATTTGA
1 ATCATTTTTATTTTTTGACTCGTGGTTTAATTCCCATCATCGTCATTTTCTAACTCATGATTTAA
* *
3589195 TTCCG
66 TCCCA
** ** * * * * * * *
3589200 ATTGTTTTTGCTTTTTGACTAGTGGTTTAA-TCCCTGTTATCTTCATTTTTTGACTCATGGTTTA
1 ATCATTTTTATTTTTTGACTCGTGGTTTAATTCCC-ATCATCGTCATTTTCTAACTCATGATTTA
3589264 ATCCCA
65 ATCCCA
* *
3589270 ACCATTTCTTATTTTTTGACTAGTGGTTT
1 ATCATTT-TTATTTTTTGACTCGTGGTTT
3589299 CATTTCGGTC
Statistics
Matches: 233, Mismatches: 70, Indels: 16
0.73 0.22 0.05
Matches are distributed among these distances:
69 1 0.00
70 98 0.42
71 131 0.56
72 3 0.01
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (70 bp):
ATCATTTTTATTTTTTGACTCGTGGTTTAATTCCCATCATCGTCATTTTCTAACTCATGATTTAA
TCCCA
Found at i:3589119 original size:106 final size:103
Alignment explanation
Indices: 3589004--3589374 Score: 293
Period size: 106 Copynumber: 3.5 Consensus size: 103
3588994 TTTGTTTCTC
** * *
3589004 TGACTCGTGGTTTAATTCCC-ATTGTCGTCATTTTCTAACTCATGATTTAATCCCAATCTTTTTT
1 TGACTCGTGGTTTAA-TCCCTATCATCTTAATTTTCTAACTCATGATTTAATCCCAATCTTTTTT
3589068 CATTTTTTGACCAGTGGTTTCATCTCGATCGTTTTCATTTT
65 -ATTTTTTGACCAGTGGTTTCAT-TCGATCGTTTTCATTTT
* * * ***** *
3589109 CTGACTCGTGGTTTAAACCC-AGTCATTTTAAGTTT-TAGACTCATGATTTAATTTTGGTCATTT
1 -TGACTCGTGGTTTAATCCCTA-TCATCTTAATTTTCTA-ACTCATGATTTAATCCCAATCTTTT
* * *
3589172 TTATTTTTTGACTCA-TGATTTGATTCCGATTGTTTTTGC-TTTT
63 TTATTTTTTGAC-CAGTGGTTTCATT-CGATCG-TTTT-CATTTT
* * * * * * * * *
3589215 TGACTAGTGGTTTAATCCCTGTTATCTTCATTTTTTGACTCATGGTTTAATCCCAACCATTTCTT
1 TGACTCGTGGTTTAATCCCTATCATCTTAATTTTCTAACTCATGATTTAATCCCAATC-TTTTTT
* *
3589280 ATTTTTTGACTAGTGGTTTCATTTCGGTCGTTTTCATTTT
65 ATTTTTTGACCAGTGGTTTCA-TTCGATCGTTTTCATTTT
* * * * **
3589320 TTACCTCGTGGTTTAGTCCCTATCGTTTTAATTTTCTAACTCATGGCTTAATCCC
1 TGA-CTCGTGGTTTAATCCCTATCATCTTAATTTTCTAACTCATGATTTAATCCC
3589375 TGTCATTTTT
Statistics
Matches: 203, Mismatches: 49, Indels: 26
0.73 0.18 0.09
Matches are distributed among these distances:
104 2 0.01
105 79 0.39
106 119 0.59
107 3 0.01
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (103 bp):
TGACTCGTGGTTTAATCCCTATCATCTTAATTTTCTAACTCATGATTTAATCCCAATCTTTTTTA
TTTTTTGACCAGTGGTTTCATTCGATCGTTTTCATTTT
Found at i:3589382 original size:211 final size:212
Alignment explanation
Indices: 3588954--3589407 Score: 501
Period size: 211 Copynumber: 2.1 Consensus size: 212
3588944 TTAATTCCCA
* * * * * *
3588954 TCATTTTCATTTTCTAACTCGTGATTTAATTCCGGTCATTTTTGTTTCTCTGACTCGTGGTTTAA
1 TCATTTTTATTTTTTGACTCATGATTTAATTCCGATCATTTTTGTTTCTCTGACTAGTGGTTTAA
* * *
3589019 TTCCCATTGTCGTCATTTTCTAACTCATGATTTAATCCCAATCTTTTTTCATTTTTTGACCAGTG
66 TTCCCATTATCGTCATTTTCTAACTCATGATTTAATCCCAACCTTTCTTCATTTTTTGACCAGTG
3589084 GTTTCATCTCGATCGTTTTCATTTTCTGACTCGTGGTTTAAACCCAGTCATTTTAAGTTTTAGAC
131 GTTTCATCTCGATCGTTTTCATTTTCTGACTCGTGGTTTAAACCCAGTCATTTTAAGTTTTAGAC
* **
3589149 TCATGATTTAATTTTGG
196 TCATGACTTAATCCTGG
* **
3589166 TCATTTTTATTTTTTGACTCATGATTTGATTCCGATTGTTTTTGCTTT-T-TGACTAGTGGTTTA
1 TCATTTTTATTTTTTGACTCATGATTTAATTCCGATCATTTTTG-TTTCTCTGACTAGTGGTTTA
* * * * * *
3589229 A-TCCCTGTTATCTTCATTTTTTGACTCATGGTTTAATCCCAACCATTTCTT-ATTTTTTGACTA
65 ATTCCC-ATTATCGTCATTTTCTAACTCATGATTTAATCCCAACC-TTTCTTCATTTTTTGACCA
* * * ** * *
3589292 GTGGTTTCATTTCGGTCGTTTTCATTTT-TTACCTCGTGGTTTAGTCCCTA-TCGTTTTAATTTT
128 GTGGTTTCATCTCGATCGTTTTCATTTTCTGA-CTCGTGGTTTAAACCC-AGTCATTTTAAGTTT
*
3589355 CTA-ACTCATGGCTTAATCCCT-G
191 -TAGACTCATGACTTAAT-CCTGG
* * *
3589377 TCATTTTTAGTTTTAGACTCATGATATAATT
1 TCATTTTTATTTTTTGACTCATGATTTAATT
3589408 TTGGTCATTT
Statistics
Matches: 202, Mismatches: 33, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
210 6 0.03
211 147 0.73
212 46 0.23
213 3 0.01
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (212 bp):
TCATTTTTATTTTTTGACTCATGATTTAATTCCGATCATTTTTGTTTCTCTGACTAGTGGTTTAA
TTCCCATTATCGTCATTTTCTAACTCATGATTTAATCCCAACCTTTCTTCATTTTTTGACCAGTG
GTTTCATCTCGATCGTTTTCATTTTCTGACTCGTGGTTTAAACCCAGTCATTTTAAGTTTTAGAC
TCATGACTTAATCCTGG
Found at i:3589536 original size:246 final size:246
Alignment explanation
Indices: 3589064--3589508 Score: 594
Period size: 246 Copynumber: 1.8 Consensus size: 246
3589054 TCCCAATCTT
* * * * *
3589064 TTTTCATTTTTTGACCAGTGGTTTCATCTCGATCGTTTTCATTTTCTGACTCGTGGTTTAAACCC
1 TTTTCATTTTTTGACCAGTGGTTTCATCCCGATCGTTTTAATTTTCTAACTCATGGCTTAAACCC
* ***
3589129 AGTCATTTTAAGTTTTAGACTCATGATTTAATTTTGGTCATTTTTATTTTTTGACTCATGATTTG
66 AGTCATTTTAAGTTTTAGACTCATGATATAATTTTGGTCATTTTTATTTTCAAACTCATGATTTG
*** *
3589194 ATTCCGATTGTTTTTGCTTTTTGACTAGTGGTTTAATCCCTGTTATCTTCATTTTTTGACTCATG
131 ATTCCGACCATTTTTGCTTTTTGACTAGTGGTTTAATCCCTGTCATCTTCATTTTTTGACTCATG
* *
3589259 GTTTAATCCCAACCATTTCTTATTTTTTGACTAGTGGTTTCATTTCGGTCG
196 ATTTAATCCCAACCATTTCTAATTTTTTGACTAGTGGTTTCATTTCGGTCG
* * *
3589310 TTTTCATTTTTT-ACCTCGTGGTTT-AGTCCCTATCGTTTTAATTTTCTAACTCATGGCTTAATC
1 TTTTCATTTTTTGACC-AGTGGTTTCA-TCCCGATCGTTTTAATTTTCTAACTCATGGCTTAAAC
* * *
3589373 CCTGTCATTTTTAGTTTTAGACTCATGATATAATTTTGGTCATTTTTATTTTCAAACTCGTGATT
64 CCAGTCATTTTAAGTTTTAGACTCATGATATAATTTTGGTCATTTTTATTTTCAAACTCATGATT
* *
3589438 TGATTCC-AGCCATTTTTGTTTTTTGACTAGTGGTTTAAT-CCTGGTCATTTTC-TTTTTCTGAC
129 TGATTCCGA-CCATTTTTGCTTTTTGACTAGTGGTTTAATCCCT-GTCATCTTCATTTTT-TGAC
*
3589500 TTATGATTT
191 TCATGATTT
3589509 GATTTCGATC
Statistics
Matches: 171, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
245 13 0.08
246 158 0.92
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (246 bp):
TTTTCATTTTTTGACCAGTGGTTTCATCCCGATCGTTTTAATTTTCTAACTCATGGCTTAAACCC
AGTCATTTTAAGTTTTAGACTCATGATATAATTTTGGTCATTTTTATTTTCAAACTCATGATTTG
ATTCCGACCATTTTTGCTTTTTGACTAGTGGTTTAATCCCTGTCATCTTCATTTTTTGACTCATG
ATTTAATCCCAACCATTTCTAATTTTTTGACTAGTGGTTTCATTTCGGTCG
Found at i:3589562 original size:246 final size:246
Alignment explanation
Indices: 3589064--3589570 Score: 585
Period size: 246 Copynumber: 2.1 Consensus size: 246
3589054 TCCCAATCTT
* * * * *
3589064 TTTTCATTTTTTGACCAGTGGTTTCATCTCGATCGTTTTCATTTTCTGACTCGTGGTTTAAACCC
1 TTTTCATTTTTTGACCAGTGGTTTCATCCCGATCGTTTTAATTTTCTAACTCATGGCTTAAACCC
* ***
3589129 AGTCATTTTAAGTTTTAGACTCATGATTTAATTTTGGTCATTTTTATTTTTTGACTCATGATTTG
66 AGTCATTTTAAGTTTTAGACTCATGATATAATTTTGGTCATTTTTATTTTCAAACTCATGATTTG
*** *
3589194 ATTCCGATTGTTTTTGCTTTTTGACTAGTGGTTTAATCCCTGTTATCTTCATTTTTTGACTCATG
131 ATTCCGACCATTTTTGCTTTTTGACTAGTGGTTTAATCCCTGTCATCTTCATTTTTTGACTCATG
* * * * ** *
3589259 GTTTAATCCCAACCATTTCTTATTTTTTGACTAGTGGTTTCATTTCGGTCG
196 ATTTAATCCCAACCATTTCTAATTTTTTGACTAGTGATTTAATGCCGGTCA
* * *
3589310 TTTTCATTTTTT-ACCTCGTGGTTT-AGTCCCTATCGTTTTAATTTTCTAACTCATGGCTTAATC
1 TTTTCATTTTTTGACC-AGTGGTTTCA-TCCCGATCGTTTTAATTTTCTAACTCATGGCTTAAAC
* * *
3589373 CCTGTCATTTTTAGTTTTAGACTCATGATATAATTTTGGTCATTTTTATTTTCAAACTCGTGATT
64 CCAGTCATTTTAAGTTTTAGACTCATGATATAATTTTGGTCATTTTTATTTTCAAACTCATGATT
* *
3589438 TGATTCC-AGCCATTTTTGTTTTTTGACTAGTGGTTTAAT-CCTGGTCATTTTC-TTTTTCTGAC
129 TGATTCCGA-CCATTTTTGCTTTTTGACTAGTGGTTTAATCCCT-GTCATCTTCATTTTT-TGAC
* * ** * * * * *
3589500 TTATGATTTGATTTCGATCGTTT-TAATTTCTTTGACTTGTGATTTAATGCCTGTCA
191 TCATGATTTAATCCCAACCATTTCTAATTT-TTTGACTAGTGATTTAATGCCGGTCA
3589556 TTTTCATTTTTTGAC
1 TTTTCATTTTTTGAC
3589571 TCGTCATTTA
Statistics
Matches: 217, Mismatches: 37, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
245 18 0.08
246 197 0.91
247 2 0.01
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.51
Consensus pattern (246 bp):
TTTTCATTTTTTGACCAGTGGTTTCATCCCGATCGTTTTAATTTTCTAACTCATGGCTTAAACCC
AGTCATTTTAAGTTTTAGACTCATGATATAATTTTGGTCATTTTTATTTTCAAACTCATGATTTG
ATTCCGACCATTTTTGCTTTTTGACTAGTGGTTTAATCCCTGTCATCTTCATTTTTTGACTCATG
ATTTAATCCCAACCATTTCTAATTTTTTGACTAGTGATTTAATGCCGGTCA
Found at i:3590156 original size:35 final size:35
Alignment explanation
Indices: 3590021--3590247 Score: 161
Period size: 35 Copynumber: 6.5 Consensus size: 35
3590011 AATATTCATT
* * * *
3590021 ATCATTTTCGTTTTCTGACTCATGGTTTAATAACA
1 ATCATTTTCATTTTCTGACTCATGATTTAATATCG
** * *
3590056 ATCGCTTTCATTTTCTAACTCATGATTTAATTTC-
1 ATCATTTTCATTTTCTGACTCATGATTTAATATCG
* * **
3590090 AGTCATTTTTATTTCTCTGGCTTGTGATTTAATATCG
1 A-TCATTTTCATTT-TCTGACTCATGATTTAATATCG
** * *
3590127 ATCATTTTCATTTTCTGACTTGTGATTTAATCTAG
1 ATCATTTTCATTTTCTGACTCATGATTTAATATCG
* * * * * *
3590162 GTCATTTTCATTTTCTAACCCATGGTTTAAT-CCT
1 ATCATTTTCATTTTCTGACTCATGATTTAATATCG
* * * *
3590196 ATTCATTTTCATTTTTTGACCCATGGTTTAATCTCG
1 A-TCATTTTCATTTTCTGACTCATGATTTAATATCG
* *
3590232 ACCATTTTTATTTTCT
1 ATCATTTTCATTTTCT
3590248 ATCTTGTGGT
Statistics
Matches: 151, Mismatches: 36, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
34 1 0.01
35 120 0.79
36 29 0.19
37 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.10, T:0.50
Consensus pattern (35 bp):
ATCATTTTCATTTTCTGACTCATGATTTAATATCG
Found at i:3590276 original size:35 final size:35
Alignment explanation
Indices: 3590237--3590303 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
3590227 TCTCGACCAT
* * * * *
3590237 TTTTATTTTCTATCTTGTGGTTTTATCTTGGTCAC
1 TTTTATCTTCTAACTCGTGATTTAATCTTGGTCAC
3590272 TTTTATCTTCTAACTCGTGATTTAATCTTGGT
1 TTTTATCTTCTAACTCGTGATTTAATCTTGGT
3590304 TGTTTTCATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.15, C:0.15, G:0.13, T:0.57
Consensus pattern (35 bp):
TTTTATCTTCTAACTCGTGATTTAATCTTGGTCAC
Found at i:3590458 original size:35 final size:34
Alignment explanation
Indices: 3590385--3590964 Score: 203
Period size: 35 Copynumber: 16.6 Consensus size: 34
3590375 TCTTCATCGT
* * * *
3590385 TTTTCATTTTCTAACTGGTGGTTTCAT-CTAGGTTA
1 TTTTCATTTTCTGACTCGTGGTTTAATCCT--GTCA
*
3590420 TTTTCATTTTCTGACTCGTGGTTTAATCCCTATCA
1 TTTTCATTTTCTGACTCGTGGTTTAAT-CCTGTCA
* * *
3590455 TTTTAATTTT-TGGACTCATTGTTT-ATCCTAGTCA
1 TTTTCATTTTCT-GACTCGTGGTTTAATCCT-GTCA
** * * ** *
3590489 TTTTCAATTTT-AAAATCGTGATTTAATTTTGGTAA
1 TTTTC-ATTTTCTGACTCGTGGTTTAATCCT-GTCA
* * * * *
3590524 TTTTCATTTTTTGACTAGTGATTTGATTCCAGTCA
1 TTTTCATTTTCTGACTCGTGGTTT-AATCCTGTCA
* * * * *
3590559 TTCTCGATTTT-TTACTAGTGGTTTAATTCTGGTAA
1 TTTTC-ATTTTCTGACTCGTGGTTTAATCCT-GTCA
* * ** *
3590594 TTTTCATTTTTTGACTCATCATTTAATTCTGGTCA
1 TTTTCATTTTCTGACTCGTGGTTTAATCCT-GTCA
* * * *
3590629 TTTTTATTTTCTGACTCATAGTTTAATCTTGGTCA
1 TTTTCATTTTCTGACTCGTGGTTTAATCCT-GTCA
* **
3590664 TTTTCACTTTT-TGACTTGTGGTTTAATCCATGTTG
1 TTTTCA-TTTTCTGACTCGTGGTTTAATCC-TGTCA
* **
3590699 TTTTACATTTTCTGACTCATACTTTAATCCCTGTCA
1 TTTT-CATTTTCTGACTCGTGGTTTAAT-CCTGTCA
* *
3590735 TTTTCATTTTTTGA-T-GTGTTATTTAATCCCTGTCA
1 TTTTCATTTTCTGACTCGTG--GTTTAAT-CCTGTCA
** * * * ** **
3590770 TTTTTGTTTTTTTGACTCGAGATGCAAT-CTCGATTG
1 -TTTTCATTTTCTGACTCGTGGTTTAATCCT-G-TCA
* **
3590806 CTTTCATTTTCTGACTCGTGGTTTAATCCTGGTGG
1 TTTTCATTTTCTGACTCGTGGTTTAATCCT-GTCA
* * * *
3590841 TTTTCATTTTCTCACTTAG-GGTTTAGTCCCAGTCA
1 TTTTCATTTTCTGAC-TCGTGGTTTAAT-CCTGTCA
* ** * * *
3590876 TTTTCATTTTCTAACTCGTACTTTAATTTCGGTCG
1 TTTTCATTTTCTGACTCGTGGTTTAA-TCCTGTCA
* * * *
3590911 TCTTCATTTTTTAACT--TGCATTTCAATCCTGGTCA
1 TTTTCATTTTCTGACTCGTG-GTTT-AATCCT-GTCA
3590946 TTTTCATTTTCTGACTCGT
1 TTTTCATTTTCTGACTCGT
3590965 AATTTAACTC
Statistics
Matches: 404, Mismatches: 108, Indels: 64
0.70 0.19 0.11
Matches are distributed among these distances:
33 5 0.01
34 40 0.10
35 292 0.72
36 59 0.15
37 6 0.01
38 2 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (34 bp):
TTTTCATTTTCTGACTCGTGGTTTAATCCTGTCA
Found at i:3590479 original size:114 final size:113
Alignment explanation
Indices: 3590279--3590484 Score: 247
Period size: 114 Copynumber: 1.8 Consensus size: 113
3590269 CACTTTTATC
* * *
3590279 TTCTAACTCGTGATTTAATCTTGGTTGTTTTCATTTTCTGACCATGGTTTAATTCTAGTCATTTT
1 TTCTAACTCGTGATTTAATCTAGGTTATTTTCATTTTCTGACCATGGTTTAATCCTAGTCATTTT
* * **
3590344 TATTTCTCTGATTGGTGGTTTAATCCTATTGTCTTCATCGTTTTTCATT
66 AATTTCTCTGACTCATGGTTT-ATCCTATTGTCTTCATCGTTTTTCATT
* * * *
3590393 TTCTAACTGGTGGTTTCATCTAGGTTATTTTCATTTTCTGACTCGTGGTTTAATCCCTA-TCATT
1 TTCTAACTCGTGATTTAATCTAGGTTATTTTCATTTTCTGAC-CATGGTTTAAT-CCTAGTCATT
*
3590457 TTAATTT-T-TGGACTCATTGTTTATCCTA
64 TTAATTTCTCT-GACTCATGGTTTATCCTA
3590485 GTCATTTTCA
Statistics
Matches: 77, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
113 7 0.09
114 46 0.60
115 21 0.27
116 3 0.04
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (113 bp):
TTCTAACTCGTGATTTAATCTAGGTTATTTTCATTTTCTGACCATGGTTTAATCCTAGTCATTTT
AATTTCTCTGACTCATGGTTTATCCTATTGTCTTCATCGTTTTTCATT
Found at i:3590787 original size:71 final size:70
Alignment explanation
Indices: 3590580--3590779 Score: 190
Period size: 71 Copynumber: 2.8 Consensus size: 70
3590570 TTACTAGTGG
* * * ** * *
3590580 TTTAATTCTGGTAATTTTCATTTTTTGACTCATCATTTAATTC-TGGTCATTTTTATTTTCTGAC
1 TTTAATCCTGGTCATTTTCACTTTTTGACTTGTGATTTAATCCAT-GTCATTTTTATTTTCTGAC
*
3590644 TCATAG
65 TCATAC
* * ** *
3590650 TTTAATCTTGGTCATTTTCACTTTTTGACTTGTGGTTTAATCCATGTTGTTTTACATTTTCTGAC
1 TTTAATCCTGGTCATTTTCACTTTTTGACTTGTGATTTAATCCATGTCATTTT-TATTTTCTGAC
3590715 TCATAC
65 TCATAC
* * * *
3590721 TTTAATCCCT-GTCATTTTCATTTTTTGA-TGTGTTATTTAATCCCTGTCATTTTTGTTTT
1 TTTAAT-CCTGGTCATTTTCACTTTTTGACT-TGTGATTTAATCCATGTCATTTTTATTTT
3590780 TTTGACTCGA
Statistics
Matches: 104, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
70 45 0.43
71 57 0.55
72 2 0.02
ACGTcount: A:0.18, C:0.15, G:0.11, T:0.55
Consensus pattern (70 bp):
TTTAATCCTGGTCATTTTCACTTTTTGACTTGTGATTTAATCCATGTCATTTTTATTTTCTGACT
CATAC
Found at i:3593703 original size:37 final size:37
Alignment explanation
Indices: 3593661--3593775 Score: 151
Period size: 37 Copynumber: 3.1 Consensus size: 37
3593651 ATCTTGTTTA
3593661 AAAATAGCTCCCCCTAAACAGAGGCTTTGAAACTTTG
1 AAAATAGCTCCCCCTAAACAGAGGCTTTGAAACTTTG
* *
3593698 AAAATAGCTCCCCCTAAATAGAGGCTCTTAAAACTTTG
1 AAAATAGCTCCCCCTAAACAGAGGCT-TTGAAACTTTG
* * * *
3593736 AAAATGGCT-CCCCAAAATCAAAAGCTTTGAAACTTTG
1 AAAATAGCTCCCCCTAAA-CAGAGGCTTTGAAACTTTG
3593773 AAA
1 AAA
3593776 TTTTAAAATG
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
37 45 0.66
38 23 0.34
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (37 bp):
AAAATAGCTCCCCCTAAACAGAGGCTTTGAAACTTTG
Found at i:3594832 original size:32 final size:33
Alignment explanation
Indices: 3594796--3594890 Score: 104
Period size: 32 Copynumber: 2.9 Consensus size: 33
3594786 ATCTTATTAA
3594796 GTGCCAACTAAGCTAGGCTTAAACTTTCACT-G
1 GTGCCAACTAAGCTAGGCTTAAACTTTCACTGG
* * * * *
3594828 GTGCCAAGTAAACTGGGCTTAAAATTTCATTGG
1 GTGCCAACTAAGCTAGGCTTAAACTTTCACTGG
* * *
3594861 GTTCTAACTAAGTTAGGCTT-AACTTTCACT
1 GTGCCAACTAAGCTAGGCTTAAACTTTCACT
3594891 ATTGCTAGGT
Statistics
Matches: 49, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
32 34 0.69
33 15 0.31
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (33 bp):
GTGCCAACTAAGCTAGGCTTAAACTTTCACTGG
Found at i:3595287 original size:33 final size:34
Alignment explanation
Indices: 3595190--3595398 Score: 92
Period size: 34 Copynumber: 6.1 Consensus size: 34
3595180 AACTTTCTTT
* * **
3595190 GGTGCCAGGTAAACTAGACTTAATAATATTTC-TTT
1 GGTGCCAAGTAAACTAGGCTTAA-AAT-TTTCATAA
* *
3595225 GGTGCC-AGATAAACTAGGCTTGAGA-TTTCATAA
1 GGTGCCAAG-TAAACTAGGCTTAAAATTTTCATAA
*
3595258 GGTGCCAAGTAAACTAGGCTT-AAATTTTCACT-G
1 GGTGCCAAGTAAACTAGGCTTAAAATTTTCA-TAA
* ** * * *
3595291 GGAG-CTGGCTAATCTGGGCTTTAAAATCTTCATCAA
1 GGTGCCAAG-TAAACTAGGC-TTAAAATTTTCAT-AA
* * * **
3595327 -GTGCTAGGTAAACTGGGCTTAAAATCTTTC-TTT
1 GGTGCCAAGTAAACTAGGCTTAAAAT-TTTCATAA
* * * *
3595360 GGTGCCAAATAAACTGGGCTTAAAATTTTTATCA
1 GGTGCCAAGTAAACTAGGCTTAAAATTTTCATAA
3595394 GGTGC
1 GGTGC
3595399 TAGATAAATT
Statistics
Matches: 132, Mismatches: 28, Indels: 29
0.70 0.15 0.15
Matches are distributed among these distances:
32 8 0.06
33 38 0.29
34 44 0.33
35 40 0.30
36 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33
Consensus pattern (34 bp):
GGTGCCAAGTAAACTAGGCTTAAAATTTTCATAA
Found at i:3595352 original size:34 final size:34
Alignment explanation
Indices: 3595304--3595417 Score: 122
Period size: 34 Copynumber: 3.3 Consensus size: 34
3595294 GCTGGCTAAT
* *
3595304 CTGGGCTTTAAAATCTTCATCAAGTGCTAGGTAAA
1 CTGGGC-TTAAAATCTTCATCAGGTGCTAGATAAA
** * *
3595339 CTGGGCTTAAAATCTTTC-TTTGGTGCCAAATAAA
1 CTGGGCTTAAAATC-TTCATCAGGTGCTAGATAAA
* *
3595373 CTGGGCTTAAAATTTTTATCAGGTGCTAGATAAA
1 CTGGGCTTAAAATCTTCATCAGGTGCTAGATAAA
*
3595407 TTGGGCTTAAA
1 CTGGGCTTAAA
3595418 TTTTTATGTA
Statistics
Matches: 64, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
33 2 0.03
34 53 0.83
35 9 0.14
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (34 bp):
CTGGGCTTAAAATCTTCATCAGGTGCTAGATAAA
Found at i:3595383 original size:68 final size:66
Alignment explanation
Indices: 3594978--3595387 Score: 197
Period size: 66 Copynumber: 6.1 Consensus size: 66
3594968 AAGCTATGCT
* * * * ** * *
3594978 TTAAAATCCTCATCAAGTGCTAGGTAAACTGGGTTTAAGTTCTTTCTTTGGTGCTAGATAAACTA
1 TTAAAAT-TTCATCAAGTGCCAGGTAAACTAGGCTTAAAAT-TTTCTTTGGTGCCAGATAAACTG
3595043 GGC
64 GGC
* *** * * * ** ** * * * * *
3595046 TTGAAATTTCATTGGGTGTCAGCTAAGCTAGGC-TAAACCTTTCACTGATGTCAGGTAAATTAGG
1 TTAAAATTTCATCAAGTGCCAGGTAAACTAGGCTTAAAATTTTCTTTGGTGCCAGATAAACTGGG
3595110 C
66 C
** * * * *
3595111 TTAAAATTTTCATCATAG-GCCAAATAAACT-GGTCTT-AAATTTT-TACTGATACTAGATAAAC
1 TTAAAA-TTTCATCA-AGTGCCAGGTAAACTAGG-CTTAAAATTTTCT-TTGGTGCCAGATAAAC
*
3595172 TGGGT
62 TGGGC
* *** * *
3595177 TTAAACTTTC-TTTGGTGCCAGGTAAACTAGACTTAATAATATTTCTTTGGTGCCAGATAAACTA
1 TTAAAATTTCATCAAGTGCCAGGTAAACTAGGCTTAA-AAT-TTTCTTTGGTGCCAGATAAACTG
3595241 GGC
64 GGC
* * * * * * ** * *
3595244 TTGAGATTTCAT-AAGGTGCCAAGTAAACTAGGCTT-AAATTTTCACTGGGAGCTGGCTAATCTG
1 TTAAAATTTCATCAA-GTGCCAGGTAAACTAGGCTTAAAATTTTC-TTTGGTGCCAGATAAACTG
3595307 GGC
64 GGC
* * *
3595310 TTTAAAATCTTCATCAAGTGCTAGGTAAACTGGGCTTAAAATCTTTCTTTGGTGCCAAATAAACT
1 -TTAAAAT-TTCATCAAGTGCCAGGTAAACTAGGCTTAAAAT-TTTCTTTGGTGCCAGATAAACT
3595375 GGGC
63 GGGC
3595379 TTAAAATTT
1 TTAAAATTT
3595388 TTATCAGGTG
Statistics
Matches: 243, Mismatches: 80, Indels: 39
0.67 0.22 0.11
Matches are distributed among these distances:
63 1 0.00
64 14 0.06
65 36 0.15
66 62 0.26
67 51 0.21
68 55 0.23
69 20 0.08
70 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (66 bp):
TTAAAATTTCATCAAGTGCCAGGTAAACTAGGCTTAAAATTTTCTTTGGTGCCAGATAAACTGGG
C
Found at i:3595399 original size:68 final size:67
Alignment explanation
Indices: 3594908--3595422 Score: 199
Period size: 68 Copynumber: 7.7 Consensus size: 67
3594898 GGTAAATTGT
* ** * * * * * *
3594908 GCTTAAAATTTTCATGAGG-GACCATATAAACTGGGCTT-AAATTTTCATTGGAAGCTAGCTAAG
1 GCTTAAAATTTTCATCAGGTG-CCAGGTAAACTAGGCTTAAAATTTTCTTTGG-TGCCAGATAAA
**
3594971 CTAT
64 CTGG
** * * * * ** *
3594975 GCTTTAAAATCCTCATCAAGTGCTAGGTAAACTGGGTTTAAGTTCTTTCTTTGGTGCTAGATAAA
1 GC-TTAAAATTTTCATCAGGTGCCAGGTAAACTAGGCTTAAAAT-TTTCTTTGGTGCCAGATAAA
*
3595040 CTAG
64 CTGG
* ** * * * ** ** * * * *
3595044 GCTTGAAA-TTTCATTGGGTGTCAGCTAAGCTAGGC-TAAACCTTTCACTGATGTCAGGTAAATT
1 GCTTAAAATTTTCATCAGGTGCCAGGTAAACTAGGCTTAAAATTTTCTTTGGTGCCAGATAAACT
*
3595107 AG
66 GG
* ** * * * *
3595109 GCTTAAAATTTTCATCATAG-GCCAAATAAACT-GGTCTT-AAATTTT-TACTGATACTAGATAA
1 GCTTAAAATTTTCATCA-GGTGCCAGGTAAACTAGG-CTTAAAATTTTCT-TTGGTGCCAGATAA
3595170 ACTGG
63 ACTGG
* * ** *
3595175 G-TTTAAACTTTC-TTTGGTGCCAGGTAAACTAGACTTAATAATATTTCTTTGGTGCCAGATAAA
1 GCTTAAAATTTTCATCAGGTGCCAGGTAAACTAGGCTTAA-AAT-TTTCTTTGGTGCCAGATAAA
*
3595238 CTAG
64 CTGG
* * * * * * * ** * *
3595242 GCTTGAGA-TTTCATAAGGTGCCAAGTAAACTAGGCTT-AAATTTTCACTGGGAGCTGGCTAATC
1 GCTTAAAATTTTCATCAGGTGCCAGGTAAACTAGGCTTAAAATTTTC-TTTGGTGCCAGATAAAC
3595305 TGG
65 TGG
* * * * *
3595308 GCTTTAAAATCTTCATCAAGTGCTAGGTAAACTGGGCTTAAAATCTTTCTTTGGTGCCAAATAAA
1 GC-TTAAAATTTTCATCAGGTGCCAGGTAAACTAGGCTTAAAAT-TTTCTTTGGTGCCAGATAAA
3595373 CTGG
64 CTGG
* * * * * *
3595377 GCTTAAAATTTTTATCAGGTGCTAGATAAATTGGGCTTAAATTTTT
1 GCTTAAAATTTTCATCAGGTGCCAGGTAAACTAGGCTTAAAATTTT
3595423 ATGTAGACTT
Statistics
Matches: 323, Mismatches: 103, Indels: 44
0.69 0.22 0.09
Matches are distributed among these distances:
63 1 0.00
64 14 0.04
65 41 0.13
66 57 0.18
67 50 0.15
68 114 0.35
69 34 0.11
70 12 0.04
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (67 bp):
GCTTAAAATTTTCATCAGGTGCCAGGTAAACTAGGCTTAAAATTTTCTTTGGTGCCAGATAAACT
GG
Found at i:3595635 original size:22 final size:22
Alignment explanation
Indices: 3595583--3595636 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
3595573 GTATACTTTT
*
3595583 TAACTAAT-TCAGGCTTATGTTC
1 TAACTAATCT-AGGCTTATGTGC
3595605 TAACTAATCTAGGCTTATGTGC
1 TAACTAATCTAGGCTTATGTGC
*
3595627 TAGCTAATCT
1 TAACTAATCT
3595637 GGGATTAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 28 0.97
23 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (22 bp):
TAACTAATCTAGGCTTATGTGC
Found at i:3596839 original size:22 final size:22
Alignment explanation
Indices: 3596814--3596861 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
3596804 ATATAAGCAA
*
3596814 TTTTAGAAATTTTAGG-A-TTTT
1 TTTTTGAAATTTT-GGAAGTTTT
3596835 TTTTTGAAATTTTGGAAGTTTT
1 TTTTTGAAATTTTGGAAGTTTT
3596857 TTTTT
1 TTTTT
3596862 TTGGAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 2 0.08
21 13 0.54
22 9 0.38
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (22 bp):
TTTTTGAAATTTTGGAAGTTTT
Found at i:3596881 original size:25 final size:24
Alignment explanation
Indices: 3596831--3596881 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 24
3596821 AATTTTAGGA
* ** *
3596831 TTTTTTTTTGAAATTTTGGAAGTT
1 TTTTTTTTTGAAATTATCCAAATT
3596855 TTTTTTTTTGGAAATTATCCAAATT
1 TTTTTTTTT-GAAATTATCCAAATT
3596880 TT
1 TT
3596882 GGTGAAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.24, C:0.04, G:0.12, T:0.61
Consensus pattern (24 bp):
TTTTTTTTTGAAATTATCCAAATT
Found at i:3597402 original size:20 final size:21
Alignment explanation
Indices: 3597376--3597445 Score: 74
Period size: 22 Copynumber: 3.4 Consensus size: 21
3597366 CAATCGAGCC
* *
3597376 ATTTTTTTATTTTTCTTTGGT
1 ATTTTTTTATTTTTATTTAGT
3597397 -TTTTTTTA-TTTTATTTAGT
1 ATTTTTTTATTTTTATTTAGT
*
3597416 ATTTTTCTTATTTTT-TCCTAGT
1 ATTTTT-TTATTTTTAT-TTAGT
3597438 ATTTTTTT
1 ATTTTTTT
3597446 TCTTTCATGA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
19 9 0.21
20 13 0.31
21 6 0.14
22 14 0.33
ACGTcount: A:0.13, C:0.06, G:0.06, T:0.76
Consensus pattern (21 bp):
ATTTTTTTATTTTTATTTAGT
Found at i:3597421 original size:22 final size:21
Alignment explanation
Indices: 3597396--3597446 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
3597386 TTTTCTTTGG
3597396 TTTTTTTTATTTTATT-TAGTA
1 TTTTTTTTATTTT-TTCTAGTA
*
3597417 TTTTTCTTATTTTTTCCTAGTA
1 TTTTTTTTATTTTTT-CTAGTA
3597439 TTTTTTTT
1 TTTTTTTT
3597447 CTTTCATGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 2 0.08
21 12 0.46
22 12 0.46
ACGTcount: A:0.14, C:0.06, G:0.04, T:0.76
Consensus pattern (21 bp):
TTTTTTTTATTTTTTCTAGTA
Found at i:3597685 original size:15 final size:15
Alignment explanation
Indices: 3597662--3597696 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
3597652 TTCAAGCAAA
3597662 AAAAAATAAAAATAT
1 AAAAAATAAAAATAT
*
3597677 AAAACATAAAAATAT
1 AAAAAATAAAAATAT
3597692 AAAAA
1 AAAAA
3597697 TTTTTGGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAAAATAAAAATAT
Found at i:3601811 original size:24 final size:24
Alignment explanation
Indices: 3601783--3601829 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
3601773 AAAATGTCTC
* *
3601783 AAAGAGAGAAAGAAAAGCAAAATA
1 AAAGAAAGAAAGAAAAGAAAAATA
*
3601807 AAAGAAAGAGAGAAAAGAAAAAT
1 AAAGAAAGAAAGAAAAGAAAAAT
3601830 GCCACAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.72, C:0.02, G:0.21, T:0.04
Consensus pattern (24 bp):
AAAGAAAGAAAGAAAAGAAAAATA
Found at i:3602221 original size:18 final size:19
Alignment explanation
Indices: 3602198--3602236 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
3602188 GATGAAAAAG
3602198 AAAAAAATG-AAAAAATGA
1 AAAAAAATGAAAAAAATGA
3602216 AAAAAAATGAAAAAAATGA
1 AAAAAAATGAAAAAAATGA
3602235 AA
1 AA
3602237 GAATGGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (19 bp):
AAAAAAATGAAAAAAATGA
Found at i:3602230 original size:27 final size:28
Alignment explanation
Indices: 3602192--3602256 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 28
3602182 GGAAAAGATG
3602192 AAAAA-GAAAAAAATGAAAAAAT-GAAA
1 AAAAATGAAAAAAATGAAAAAATGGAAA
*
3602218 AAAAATGAAAAAAATGAAAGAATGGAAA
1 AAAAATGAAAAAAATGAAAAAATGGAAA
*
3602246 AATAATGAAAA
1 AAAAATGAAAA
3602257 TAAGAGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 5 0.14
27 16 0.46
28 14 0.40
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (28 bp):
AAAAATGAAAAAAATGAAAAAATGGAAA
Found at i:3602259 original size:9 final size:9
Alignment explanation
Indices: 3602192--3602256 Score: 73
Period size: 8 Copynumber: 7.2 Consensus size: 9
3602182 GGAAAAGATG
3602192 AAAAA-GAA
1 AAAAATGAA
3602200 AAAAATG-A
1 AAAAATGAA
3602208 AAAAATGAAA
1 AAAAATG-AA
3602218 AAAAATGAA
1 AAAAATGAA
3602227 AAAAATG-A
1 AAAAATGAA
*
3602235 AAGAATGGAA
1 AAAAAT-GAA
3602245 AAATAATGAA
1 AAA-AATGAA
3602255 AA
1 AA
3602257 TAAGAGAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
8 19 0.39
9 11 0.22
10 16 0.33
11 3 0.06
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (9 bp):
AAAAATGAA
Found at i:3604004 original size:41 final size:41
Alignment explanation
Indices: 3603947--3604097 Score: 194
Period size: 42 Copynumber: 3.6 Consensus size: 41
3603937 GTGATTGTCA
*
3603947 AGGAGCAACTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAG
* *
3603988 AGGAGCAAATTATTTTTCAAAAGTTGTGATGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTC-AAAGTTGTGGTGCCTCTGTTTAG
* **
3604030 AGGAGCAATTTATTTTTCCAAAGTTGTCGGCGCCTCAATTTAG
1 AGGAGCAATTTATTTTT-CAAAGTTGT-GGTGCCTCTGTTTAG
*
3604073 AGGAACTTAATTTATTTTTCAAAGT
1 AGGAGC--AATTTATTTTTCAAAGT
3604098 CATTGAGCCT
Statistics
Matches: 97, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
41 17 0.18
42 46 0.47
43 17 0.18
44 6 0.06
45 11 0.11
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (41 bp):
AGGAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAG
Found at i:3604581 original size:21 final size:21
Alignment explanation
Indices: 3604557--3604602 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
3604547 ATAGGAGCAA
3604557 TTTTAGAAATTTTAGGAA-TTT
1 TTTTAGAAATTTT-GGAAGTTT
* *
3604578 TTTTTGACATTTTGGAAGTTT
1 TTTTAGAAATTTTGGAAGTTT
3604599 TTTT
1 TTTT
3604603 TCTGGAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.24, C:0.02, G:0.15, T:0.59
Consensus pattern (21 bp):
TTTTAGAAATTTTGGAAGTTT
Found at i:3605172 original size:23 final size:23
Alignment explanation
Indices: 3605136--3605200 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
3605126 AGTCAAGCCA
* *
3605136 TTTTTTTTATTTTTCTTTGGTAT
1 TTTTTTTTATTTTTATTTAGTAT
3605159 TTTTTATTTA-TTTTATTTAGTAT
1 TTTTT-TTTATTTTTATTTAGTAT
* *
3605182 TTTTTCTTAGTATTTATTT
1 TTTTTTTTA-TTTTTATTT
3605201 CTTTCATGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
22 3 0.09
23 21 0.60
24 11 0.31
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.75
Consensus pattern (23 bp):
TTTTTTTTATTTTTATTTAGTAT
Found at i:3605201 original size:14 final size:13
Alignment explanation
Indices: 3605145--3605203 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 13
3605135 ATTTTTTTTA
*
3605145 TTTTTCTTTGGTAT
1 TTTTTC-TTAGTAT
*
3605159 TTTTTATT--TAT
1 TTTTTCTTAGTAT
*
3605170 TTTAT-TTAGTAT
1 TTTTTCTTAGTAT
3605182 TTTTTCTTAGTAT
1 TTTTTCTTAGTAT
3605195 TTATTTCTT
1 TT-TTTCTT
3605204 TCATGATCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
10 2 0.05
11 7 0.18
12 7 0.18
13 11 0.29
14 11 0.29
ACGTcount: A:0.15, C:0.05, G:0.07, T:0.73
Consensus pattern (13 bp):
TTTTTCTTAGTAT
Found at i:3605455 original size:8 final size:8
Alignment explanation
Indices: 3605418--3605454 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
3605408 ATTTTCAAGC
3605418 AAAAAAAT
1 AAAAAAAT
3605426 AAAAAAAT
1 AAAAAAAT
*
3605434 AAAAACAT
1 AAAAAAAT
*
3605442 AAAAATAT
1 AAAAAAAT
3605450 AAAAA
1 AAAAA
3605455 TTTTTGGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.14
Consensus pattern (8 bp):
AAAAAAAT
Found at i:3605938 original size:55 final size:52
Alignment explanation
Indices: 3605801--3605947 Score: 179
Period size: 52 Copynumber: 2.8 Consensus size: 52
3605791 TCTAAGAAAG
* **
3605801 AAAAAAGA-ATTTCTAAATAAGCCCAAATGGTGGAAAATTTAGAAATTTCGA
1 AAAAAAAATATTTCTAAATTGGCCCAAATGGTGGAAAATTTAGAAATTTCGA
* * *
3605852 AAAAAAAATATTTCTAAATTGACCCAAATGGTGGACAATTTAGAAATTTTGAAA
1 AAAAAAAATATTTCTAAATTGGCCCAAATGGTGGAAAATTTAGAAATTTCG--A
* *
3605906 AAAAGAAAATATTTCTAATTTGGCCCAAATGGTTGAATAATT
1 AAAA-AAAATATTTCTAAATTGGCCCAAATGGTGGAA-AATT
3605948 AGAGATATTT
Statistics
Matches: 81, Mismatches: 10, Indels: 5
0.84 0.10 0.05
Matches are distributed among these distances:
51 7 0.09
52 37 0.46
54 5 0.06
55 28 0.35
56 4 0.05
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.29
Consensus pattern (52 bp):
AAAAAAAATATTTCTAAATTGGCCCAAATGGTGGAAAATTTAGAAATTTCGA
Found at i:3606853 original size:27 final size:27
Alignment explanation
Indices: 3606808--3606860 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
3606798 CAGAGAAAGA
*
3606808 TTTTCATTTTAGTAGTTTTTTTTTTGT
1 TTTTCATTTTAGTAGTTTTTATTTTGT
* * *
3606835 TTTTTATTTTGGTATTTTTTATTTTG
1 TTTTCATTTTAGTAGTTTTTATTTTG
3606861 GGCTTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.11, C:0.02, G:0.11, T:0.75
Consensus pattern (27 bp):
TTTTCATTTTAGTAGTTTTTATTTTGT
Found at i:3606867 original size:15 final size:15
Alignment explanation
Indices: 3606834--3606869 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
3606824 TTTTTTTTTG
*
3606834 TTTTTTATTTTGGTA
1 TTTTTTATTTTGGGA
*
3606849 TTTTTTATTTTGGGC
1 TTTTTTATTTTGGGA
3606864 TTTTTT
1 TTTTTT
3606870 TTCTTATCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.08, C:0.03, G:0.14, T:0.75
Consensus pattern (15 bp):
TTTTTTATTTTGGGA
Found at i:3607713 original size:9 final size:9
Alignment explanation
Indices: 3607683--3607736 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
3607673 CTTAAATTTT
3607683 TTTTTTTCA
1 TTTTTTTCA
*
3607692 ATTTTTTCAA
1 TTTTTTTC-A
3607702 TTTTTTTCA
1 TTTTTTTCA
** *
3607711 TTTTTCGCT
1 TTTTTTTCA
3607720 TTTTTTTCA
1 TTTTTTTCA
3607729 CTTTTTTT
1 -TTTTTTT
3607737 AAAGCGTTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
9 20 0.57
10 15 0.43
ACGTcount: A:0.11, C:0.13, G:0.02, T:0.74
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:3611581 original size:24 final size:24
Alignment explanation
Indices: 3611536--3611583 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
3611526 ATGAACTATA
* *
3611536 TGTTAAAAGAAAATTTTGTTTTTT
1 TGTTAAAAGAAAATCTTCTTTTTT
3611560 TGTTAAAA-AAAATGCTTCTTTTTT
1 TGTTAAAAGAAAAT-CTTCTTTTTT
3611584 AATTTCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.52
Consensus pattern (24 bp):
TGTTAAAAGAAAATCTTCTTTTTT
Found at i:3616410 original size:145 final size:143
Alignment explanation
Indices: 3616104--3616501 Score: 496
Period size: 145 Copynumber: 2.8 Consensus size: 143
3616094 GTTCTTAAAA
* * * * ** *
3616104 CACC-AAAATCATGAAATATTATAAAATTGAGATTTGAAAAGTTTCATGAAAATCTGAGCTAGGA
1 CACCAAAAATCATGAAATATTATGAAATT-AAATCTGAAATGTTTCATGAAAATCCAAGCT-CGA
* * ** *
3616168 AAACG--AAATTACGAAAATACATTTATAAGGGTATTTTAGTAATTTCATAGTTCTAGGGTACTG
64 AAAGGTCAAATTACAAAAATACCCTTATAAGGGTATTTTAGTAATTTCACAGTTCTAGGGTACTG
3616231 CTATGATTTCAAATG
129 CTATGATTTCAAATG
*
3616246 CACCAAAAATCATGAAATATTATGAAATTAACATCTGAAATGTTTCATGAAAATCCAAACTCGAA
1 CACCAAAAATCATGAAATATTATGAAATTAA-ATCTGAAATGTTTCATGAAAATCCAAGCTCGAA
* * * * * **
3616311 AAGGTCAAAATACTAAAATACCCTTATAGGGGTATTTTAGTAATTTCACATTTTTTAGGGTGTTG
65 AAGGTCAAATTACAAAAATACCCTTATAAGGGTATTTTAGTAATTTCACA-GTTCTAGGGTACTG
3616376 CTATGATTTCAAATG
129 CTATGATTTCAAATG
* * * *
3616391 CACCAAAAAACATGAAATATTATGAAATTGAAATCTGAAATGTTTTATGAAAATTCAAGCTCGAG
1 CACCAAAAATCATGAAATATTATGAAATT-AAATCTGAAATGTTTCATGAAAATCCAAGCTCGAA
* *
3616456 AAGGTCAAATTAAAAAAATACCCTTATAAGGGTATTTTGGTAATTT
65 AAGGTCAAATTACAAAAATACCCTTATAAGGGTATTTTAGTAATTT
3616502 TGTACTTCTC
Statistics
Matches: 221, Mismatches: 29, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
142 11 0.05
143 47 0.21
144 38 0.17
145 123 0.56
146 2 0.01
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (143 bp):
CACCAAAAATCATGAAATATTATGAAATTAAATCTGAAATGTTTCATGAAAATCCAAGCTCGAAA
AGGTCAAATTACAAAAATACCCTTATAAGGGTATTTTAGTAATTTCACAGTTCTAGGGTACTGCT
ATGATTTCAAATG
Found at i:3617119 original size:42 final size:40
Alignment explanation
Indices: 3617033--3617203 Score: 165
Period size: 42 Copynumber: 4.2 Consensus size: 40
3617023 ACTTTTAAAG
*
3617033 ATGGCTCCCCCCAAACAAAGGCTTTGAAACTTTG-AA-G---
1 ATGGCT-CCCCCTAACAAA-GCTTTGAAACTTTGAAATGAAA
**
3617070 ATGGCTCCCTTTAGACAATAGCTTTGAAACTTTGAAATGAAA
1 ATGGCTCCCCCTA-ACAA-AGCTTTGAAACTTTGAAATGAAA
* *
3617112 ATGGCTCCCCCTAA-ATAGAGGCTCTGAAACTTTGAAGTGAAA
1 ATGGCTCCCCCTAACA-A-A-GCTTTGAAACTTTGAAATGAAA
*
3617154 ACGGCTCCCCCTAAACAAAGCCTTTGAAACTTTGAAATGAAA
1 ATGGCTCCCCCT-AACAAAG-CTTTGAAACTTTGAAATGAAA
3617196 ATGGCTCC
1 ATGGCTCC
3617204 TTTAAAATAG
Statistics
Matches: 110, Mismatches: 12, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
36 4 0.04
37 24 0.22
38 3 0.03
39 1 0.01
40 1 0.01
41 4 0.04
42 69 0.63
43 3 0.03
44 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (40 bp):
ATGGCTCCCCCTAACAAAGCTTTGAAACTTTGAAATGAAA
Found at i:3617279 original size:37 final size:37
Alignment explanation
Indices: 3617221--3617308 Score: 108
Period size: 37 Copynumber: 2.4 Consensus size: 37
3617211 TAGAATCTTG
* * * *
3617221 TTTGAAAATTGCT--CCTTAAATAGACGTTTTGAAAT
1 TTTGAAAATGGCTCCCCCTAAATAAACGTTTTGAAAC
* *
3617256 TTTGGAAATGGCTCCCCCTAAATAAAGGTTTTGAAAC
1 TTTGAAAATGGCTCCCCCTAAATAAACGTTTTGAAAC
3617293 TTTGAAAATGGCTCCC
1 TTTGAAAATGGCTCCC
3617309 TTTAAACAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 11 0.25
37 33 0.75
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (37 bp):
TTTGAAAATGGCTCCCCCTAAATAAACGTTTTGAAAC
Found at i:3623282 original size:9 final size:9
Alignment explanation
Indices: 3623253--3623309 Score: 57
Period size: 9 Copynumber: 6.7 Consensus size: 9
3623243 TTATCTATCA
*
3623253 TTTTTTAAT
1 TTTTTTCAT
3623262 TTTTTTCA-
1 TTTTTTCAT
3623270 --TTTTCAT
1 TTTTTTCAT
*
3623277 TTTTTTCCT
1 TTTTTTCAT
* *
3623286 TTTCTCCAT
1 TTTTTTCAT
3623295 TTTTTTCAT
1 TTTTTTCAT
3623304 TTTTTT
1 TTTTTT
3623310 TTCATTATCT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
6 6 0.16
9 32 0.84
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTTTTCAT
Found at i:3630815 original size:11 final size:11
Alignment explanation
Indices: 3630791--3630822 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
3630781 GTCCAATCCA
3630791 TTTT-TTTC-T
1 TTTTCTTTCTT
3630800 TTTTCTTTCTT
1 TTTTCTTTCTT
3630811 TTTTCTTTCTT
1 TTTTCTTTCTT
3630822 T
1 T
3630823 ATTATATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 4 0.19
10 4 0.19
11 13 0.62
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTCTTTCTT
Found at i:3632361 original size:23 final size:25
Alignment explanation
Indices: 3632335--3632388 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
3632325 TTTTGAGGAT
*
3632335 TTATTTG-AAAA-GATTTTTTTGAC
1 TTATTTGAAAAAGGATTTTTTTAAC
*
3632358 TTATTTGAAAAAGGTTTTTTTTAAC
1 TTATTTGAAAAAGGATTTTTTTAAC
3632383 TTATTT
1 TTATTT
3632389 ATTTATAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 7 0.26
24 4 0.15
25 16 0.59
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.56
Consensus pattern (25 bp):
TTATTTGAAAAAGGATTTTTTTAAC
Found at i:3632491 original size:17 final size:17
Alignment explanation
Indices: 3632451--3632500 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
3632441 AATAATTAAA
* *
3632451 AAATTAAAAATAAAATG
1 AAATCAAAAATAAAATC
**
3632468 AGTTCAAAAATAAAATC
1 AAATCAAAAATAAAATC
3632485 AAATCAAAAAATAAAA
1 AAATC-AAAAATAAAA
3632501 ATAAAATGGA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 16 0.62
18 10 0.38
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (17 bp):
AAATCAAAAATAAAATC
Found at i:3633340 original size:18 final size:17
Alignment explanation
Indices: 3633317--3633371 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
3633307 AAAGGAAATA
3633317 AATAATAATAATACTAAT
1 AATAATAAT-ATACTAAT
* *
3633335 AATAATAACCATAGTAAT
1 AATAATAA-TATACTAAT
*
3633353 -ATAATACTATACT-AT
1 AATAATAATATACTAAT
3633368 AATA
1 AATA
3633372 GGCTATGATG
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 2 0.07
16 7 0.23
17 6 0.20
18 15 0.50
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (17 bp):
AATAATAATATACTAAT
Found at i:3633391 original size:3 final size:3
Alignment explanation
Indices: 3633376--3633418 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
3633366 ATAATAGGCT
*
3633376 ATG ATG ATA ATG ATG ATG ATG -TG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
3633419 AATAATAGCA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.35, C:0.00, G:0.30, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:3633402 original size:20 final size:20
Alignment explanation
Indices: 3633377--3633416 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
3633367 TAATAGGCTA
3633377 TGATGATAATGATGATGATG
1 TGATGATAATGATGATGATG
*
3633397 TGATGATGATGATGATGATG
1 TGATGATAATGATGATGATG
3633417 ATAATAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.35
Consensus pattern (20 bp):
TGATGATAATGATGATGATG
Found at i:3634113 original size:86 final size:86
Alignment explanation
Indices: 3633992--3634200 Score: 274
Period size: 86 Copynumber: 2.4 Consensus size: 86
3633982 GGTTTATAGA
* * ** *
3633992 TTCGCAAGAATGGAAGATTCGCAAAATTCCAAGTTTTACAAAGGTTCTAGATTTGCAAAGATTCA
1 TTCGCAAGAATGAAAGATTCGCAAGATTCCAAGTTTTACAAAGGTTCTAGATTCACAAAGATGCA
*
3634057 AGGTTCGCAAGGATTTTCAAG
66 AGATTCGCAAGGATTTTCAAG
* ** * *
3634078 TTTGCAAGAATGAAAGATTTACAAGACTCCAAGTTTCACAAAGGTTCTAGATTCACAAAGATGCA
1 TTCGCAAGAATGAAAGATTCGCAAGATTCCAAGTTTTACAAAGGTTCTAGATTCACAAAGATGCA
* *
3634143 AGATTCGTAAGGATTTTCAGG
66 AGATTCGCAAGGATTTTCAAG
** *
3634164 TTCATAAGAAAGAAAGATTCGCAAGATTCCAAGTTTT
1 TTCGCAAGAATGAAAGATTCGCAAGATTCCAAGTTTT
3634201 GTAAAGGTAA
Statistics
Matches: 102, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
86 102 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (86 bp):
TTCGCAAGAATGAAAGATTCGCAAGATTCCAAGTTTTACAAAGGTTCTAGATTCACAAAGATGCA
AGATTCGCAAGGATTTTCAAG
Found at i:3639687 original size:23 final size:24
Alignment explanation
Indices: 3639643--3639699 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
3639633 ATTATTTTGA
3639643 TGACTTATTTGAAAAAGATTTTTT
1 TGACTTATTTGAAAAAGATTTTTT
*
3639667 TGACTGATTTGAAAAAG-TTTTTT
1 TGACTTATTTGAAAAAGATTTTTT
*
3639690 TAACTTATTT
1 TGACTTATTT
3639700 ATTTACAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 14 0.47
24 16 0.53
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.51
Consensus pattern (24 bp):
TGACTTATTTGAAAAAGATTTTTT
Found at i:3639744 original size:30 final size:29
Alignment explanation
Indices: 3639708--3639776 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
3639698 TTATTTACAG
* *
3639708 AAATAAAATAACAAA-AATAAAATTTATTAA
1 AAATAAAATAAAAAATAATAAAA--AATTAA
*
3639738 AAATAAAACCAAAAAATAATAAAAAATTAA
1 AAATAAAA-TAAAAAATAATAAAAAATTAA
3639768 AAATAAAAT
1 AAATAAAAT
3639777 GAGTTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
30 21 0.64
31 5 0.15
32 7 0.21
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (29 bp):
AAATAAAATAAAAAATAATAAAAAATTAA
Found at i:3639760 original size:46 final size:50
Alignment explanation
Indices: 3639708--3639814 Score: 127
Period size: 46 Copynumber: 2.2 Consensus size: 50
3639698 TTATTTACAG
*
3639708 AAATAAAATAA-CAAAAATAAAATTTA-TTAAAAAT-AAAAC-CAAA-AAA
1 AAATAAAATAATCAAAAATAAAA-TGAGTTAAAAATAAAAACTCAAATAAA
* *
3639754 TAATAAAA-AATTAAAAATAAAATGAGTTAAAAATAAAAACTCAAATAAA
1 AAATAAAATAATCAAAAATAAAATGAGTTAAAAATAAAAACTCAAATAAA
3639803 AAATCAAAATAA
1 AAAT-AAAATAA
3639815 AATGGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
45 4 0.08
46 25 0.50
47 5 0.10
48 4 0.08
49 6 0.12
50 4 0.08
51 2 0.04
ACGTcount: A:0.72, C:0.06, G:0.02, T:0.21
Consensus pattern (50 bp):
AAATAAAATAATCAAAAATAAAATGAGTTAAAAATAAAAACTCAAATAAA
Found at i:3639801 original size:12 final size:13
Alignment explanation
Indices: 3639783--3639816 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
3639773 AAATGAGTTA
*
3639783 AAAATAAAAACTC
1 AAAATAAAAAATC
3639796 -AAATAAAAAATC
1 AAAATAAAAAATC
3639808 AAAATAAAA
1 AAAATAAAA
3639817 TGGAAAAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAATAAAAAATC
Found at i:3640259 original size:20 final size:19
Alignment explanation
Indices: 3640201--3640265 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 19
3640191 AAAAAACTCT
*
3640201 CCAAAAACTTAAATCAAGC
1 CCAAAAACTTAAATCAAAC
* * *
3640220 CCTAAAACCTAGATCTAAAC
1 CCAAAAACTTAAATC-AAAC
3640240 CCAAAAACTTCAAATCAAA-
1 CCAAAAACTT-AAATCAAAC
3640259 CCAAAAA
1 CCAAAAA
3640266 ATCCCAACTA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 19 0.51
20 14 0.38
21 4 0.11
ACGTcount: A:0.54, C:0.28, G:0.03, T:0.15
Consensus pattern (19 bp):
CCAAAAACTTAAATCAAAC
Found at i:3640618 original size:3 final size:3
Alignment explanation
Indices: 3640610--3640657 Score: 62
Period size: 3 Copynumber: 16.3 Consensus size: 3
3640600 AAAATATATA
* * *
3640610 AAT AAT AAT AAT AAT AAT AAT AAT AAT TAT AAC CAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
3640657 A
1 A
3640658 CTATACTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:3641038 original size:95 final size:96
Alignment explanation
Indices: 3640817--3641064 Score: 242
Period size: 95 Copynumber: 2.6 Consensus size: 96
3640807 AATAGTTTAA
* * *
3640817 TAAGATTTAATTTGAGATTTAAATCCTCCAACAGTTTAGTAGGATTGAAAAATTATAAATTTGTT
1 TAAGATTCAATTTGAGATTTAAATCCTCTAATAGTTTAGTAGGATTGAAAAATTATAAATTTGTT
* * * *
3640882 TGAAACAGCAATAAGTCTTCCAATAGTTTGG
66 TGAAACAGAAATAAGACTCCCAATAATTTGG
** * ** *
3640913 TAAGA-TCTAATTCAATATTTAAATTATCTAATAGTTTAGTAGGATTGATTAAAATT-T-TATTT
1 TAAGATTC-AATTTGAGATTTAAATCCTCTAATAGTTTAGTAGGATTGA--AAAATTATAAATTT
*
3640975 -TTTCTAAA-A-AAATTAA-ACTCCCTAATAATTTGG
63 GTTT-GAAACAGAAA-TAAGACTCCC-AATAATTTGG
*
3641008 TAAGATTCAATTTGAGATTTAAATCCTCTAATAGTTTTGTAGGATT-AAAAATATATA
1 TAAGATTCAATTTGAGATTTAAATCCTCTAATAGTTTAGTAGGATTGAAAAAT-TATA
3641065 TTTAATGTAA
Statistics
Matches: 122, Mismatches: 20, Indels: 21
0.75 0.12 0.13
Matches are distributed among these distances:
92 5 0.04
93 1 0.01
94 8 0.07
95 54 0.44
96 47 0.39
97 1 0.01
98 6 0.05
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.40
Consensus pattern (96 bp):
TAAGATTCAATTTGAGATTTAAATCCTCTAATAGTTTAGTAGGATTGAAAAATTATAAATTTGTT
TGAAACAGAAATAAGACTCCCAATAATTTGG
Found at i:3641341 original size:11 final size:11
Alignment explanation
Indices: 3641325--3641351 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
3641315 TTGCTCTCTG
3641325 CTTTTCTTCTT
1 CTTTTCTTCTT
3641336 CTTTTCTTCTT
1 CTTTTCTTCTT
3641347 CTTTT
1 CTTTT
3641352 TGTTAATTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (11 bp):
CTTTTCTTCTT
Found at i:3641787 original size:43 final size:42
Alignment explanation
Indices: 3641738--3642271 Score: 220
Period size: 43 Copynumber: 12.6 Consensus size: 42
3641728 TAAGCAAAAA
* *
3641738 CTTAACAATTTTAGAAAATTTAAAAAGCTCATCTCATCAAAGG
1 CTTAACAACTTTA-AAAATTTAAAAAGCTCCTCTCATCAAAGG
* * * *
3641781 CTTAACAACTTTAAAAATTTTGAAAGGCTTCTCTCATTAAAGG
1 CTTAACAACTTTAAAAA-TTTAAAAAGCTCCTCTCATCAAAGG
* * * * * * * *
3641824 CTCAATAACCTTGAAAATTTTAAAAGGC-CCTTTCATTAGAGG
1 CTTAACAA-CTTTAAAAATTTAAAAAGCTCCTCTCATCAAAGG
* * *
3641866 GTATAA-AACTTTAAAAATTTAAAAAGATCCTCTCATCATAGG
1 CT-TAACAACTTTAAAAATTTAAAAAGCTCCTCTCATCAAAGG
* * * * * *
3641908 CTAAACAA-TTTCAAAAAATTTTAAAAGGATCCTCTTATCAGAGA
1 CTTAACAACTTT--AAAAA-TTTAAAAAGCTCCTCTCATCAAAGG
* * * ** * *
3641952 C-T--CAAC-----AACTTTGAACAGCTTATCTCATTAGAGG
1 CTTAACAACTTTAAAAATTTAAAAAGCTCCTCTCATCAAAGG
** * * * * *
3641986 -TTATGAACTTTAAAAATTTAAAAAGCTCATTTCATTATATG
1 CTTAACAACTTTAAAAATTTAAAAAGCTCCTCTCATCAAAGG
* * * * *
3642027 CTCAACAACATCAAAAAATTATAAAAGACTCCTCTTATCAAAGG
1 CTTAACAACTTTAAAAATTTA-AAAAG-CTCCTCTCATCAAAGG
* * * * *
3642071 CTCAACAACTTT-AAAATTTAAAAAGGTTCTTTC-TAAATAGAAG
1 CTTAACAACTTTAAAAATTTAAAAAGCTCCTCTCATCAA-AG--G
* *
3642114 CTAAACAACTTTAAAAAATTATAAAAGGCTCCTCTCATCAAAGG
1 CTTAACAACTTT-AAAAATT-TAAAAAGCTCCTCTCATCAAAGG
* * * * *
3642158 -TTCTACAGCTTTGAAAAATTATAAAAAGCTTCTTTCATCAGAGG
1 CTT-AACAACTTT-AAAAATT-TAAAAAGCTCCTCTCATCAAAGG
* * *
3642202 CTCT-ACAAC-TTAAAAATTTGAAAAAAACTCATATCATCAAAGG
1 CT-TAACAACTTTAAAAATTT--AAAAAGCTCCTCTCATCAAAGG
* * *
3642245 CTATAAAAATTTTGAAAATTTAAAAAG
1 CT-TAACAACTTTAAAAATTTAAAAAG
3642272 GCTCATTAAC
Statistics
Matches: 364, Mismatches: 93, Indels: 68
0.69 0.18 0.13
Matches are distributed among these distances:
34 17 0.05
35 2 0.01
36 3 0.01
40 3 0.01
41 51 0.14
42 58 0.16
43 106 0.29
44 91 0.25
45 16 0.04
46 14 0.04
47 3 0.01
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (42 bp):
CTTAACAACTTTAAAAATTTAAAAAGCTCCTCTCATCAAAGG
Found at i:3642181 original size:44 final size:44
Alignment explanation
Indices: 3642039--3642246 Score: 133
Period size: 44 Copynumber: 4.8 Consensus size: 44
3642029 CAACAACATC
* * *
3642039 AAAAAATTAT-AAAAGACTCCTCTTATCAAAGGCTCAACAACTTT
1 AAAAAATTATAAAAAG-CTCCTCTCATCAAAGGCTCTACAGCTTT
* * * * ** *
3642083 --AAAATT-TAAAAAGGTTCTTTC-TAAATAGAAGCTAAACAACTTT
1 AAAAAATTATAAAAAGCTCCTCTCATCAA-AG--GCTCTACAGCTTT
* *
3642126 AAAAAATTATAAAAGGCTCCTCTCATCAAAGGTTCTACAGCTTT
1 AAAAAATTATAAAAAGCTCCTCTCATCAAAGGCTCTACAGCTTT
* * * * *
3642170 GAAAAATTATAAAAAGCTTCTTTCATCAGAGGCTCTACAAC-TT
1 AAAAAATTATAAAAAGCTCCTCTCATCAAAGGCTCTACAGCTTT
* * * *
3642213 AAAAATTTGA-AAAAAACTCATATCATCAAAGGCT
1 AAAAAATT-ATAAAAAGCTCCTCTCATCAAAGGCT
3642247 ATAAAAATTT
Statistics
Matches: 126, Mismatches: 29, Indels: 19
0.72 0.17 0.11
Matches are distributed among these distances:
40 3 0.02
41 7 0.06
42 11 0.09
43 39 0.31
44 44 0.35
45 6 0.05
46 13 0.10
47 3 0.02
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (44 bp):
AAAAAATTATAAAAAGCTCCTCTCATCAAAGGCTCTACAGCTTT
Found at i:3642215 original size:87 final size:85
Alignment explanation
Indices: 3641991--3642271 Score: 255
Period size: 87 Copynumber: 3.2 Consensus size: 85
3641981 AGAGGTTATG
* * *
3641991 AACTTTAAAAATTTAAAAAGC-TCATTTCATTATATGCTCAACAACATCAAAAAATTATAAAAGA
1 AACTTTAAAAATTTAAAAAGCTTC-TTTCA-TAGAAGCTCAACAACATTAAAAAATTATAAAAGA
*
3642055 CTCCTCTTATCAAAGGCTCAAC
64 CTCCTCTCATCAAAGGCTCAAC
* * *
3642077 AACTTT-AAAATTTAAAAAGGTTCTTTCTAAATAGAAGCTAAACAACTTTAAAAAATTATAAAAG
1 AACTTTAAAAATTTAAAAAGCTTCTTTC---ATAGAAGCTCAACAACATTAAAAAATTATAAAAG
* * *
3642141 GCTCCTCTCATCAAAGGTTCTAC
63 ACTCCTCTCATCAAAGGCTCAAC
* * * *
3642164 AGCTTTGAAAAATTATAAAAAGCTTCTTTCATCAGAGGCTCTACAAC-TTAAAAATTTGA-AAAA
1 AACTTT-AAAAATT-TAAAAAGCTTCTTTCAT-AGAAGCTCAACAACATTAAAAAATT-ATAAAA
* * * * *
3642227 AACTCATATCATCAAAGGCTATAAA
62 GACTCCTCTCATCAAAGGCT-CAAC
* *
3642252 AATTTTGAAAATTTAAAAAG
1 AACTTTAAAAATTTAAAAAG
3642272 GCTCATTAAC
Statistics
Matches: 158, Mismatches: 27, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
85 17 0.11
86 15 0.09
87 88 0.56
88 18 0.11
89 6 0.04
90 14 0.09
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.30
Consensus pattern (85 bp):
AACTTTAAAAATTTAAAAAGCTTCTTTCATAGAAGCTCAACAACATTAAAAAATTATAAAAGACT
CCTCTCATCAAAGGCTCAAC
Found at i:3644722 original size:33 final size:33
Alignment explanation
Indices: 3644680--3644742 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
3644670 TGATAATCAT
*
3644680 AAGTAGCATTGGCATCATACCACTTAGGGTCAC
1 AAGTAGCATTAGCATCATACCACTTAGGGTCAC
3644713 AAGTAGCATTAGCATCATACCACTTAGGGT
1 AAGTAGCATTAGCATCATACCACTTAGGGT
3644743 AAGAAGGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (33 bp):
AAGTAGCATTAGCATCATACCACTTAGGGTCAC
Found at i:3653851 original size:63 final size:63
Alignment explanation
Indices: 3653731--3653856 Score: 157
Period size: 63 Copynumber: 2.0 Consensus size: 63
3653721 GTTTTTTAAG
* * * *
3653731 AAAAATAATTTTTGAGAAATAAAAATAAAACTTTAGTAATATATTGAAAGGTGTTGTAATTTT
1 AAAAATAATTCTTGAAAAATAAAAATAAAACTTTAGTAACATATCGAAAGGTGTTGTAATTTT
* * *
3653794 AAAAATAATTCTTGAAAAATAAAAGTAAAACTTTA-TCAACGTATCG-AAGAGTTTTGTAATTTT
1 AAAAATAATTCTTGAAAAATAAAAATAAAACTTTAGT-AACATATCGAAAG-GTGTTGTAATTTT
3653857 TTAAAATATG
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 4 0.07
63 50 0.93
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.37
Consensus pattern (63 bp):
AAAAATAATTCTTGAAAAATAAAAATAAAACTTTAGTAACATATCGAAAGGTGTTGTAATTTT
Found at i:3656452 original size:3 final size:3
Alignment explanation
Indices: 3656444--3656471 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
3656434 TAAATTGATG
3656444 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
3656472 TTGTAAAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:3656607 original size:17 final size:18
Alignment explanation
Indices: 3656583--3656620 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
3656573 ACTTTTTTAT
3656583 TATTTTAAAT-TTAT-TA
1 TATTTTAAATATTATGTA
3656599 TATTCTTAAATATTATGTA
1 TATT-TTAAATATTATGTA
3656618 TAT
1 TAT
3656621 ATATTCCGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.21
17 6 0.32
18 4 0.21
19 5 0.26
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (18 bp):
TATTTTAAATATTATGTA
Found at i:3656933 original size:2 final size:2
Alignment explanation
Indices: 3656926--3656959 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
3656916 TGTATAGCTG
*
3656926 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3656960 TTGGAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:3657050 original size:2 final size:2
Alignment explanation
Indices: 3657043--3657075 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
3657033 TAAAGGGTTG
3657043 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3657076 TTGGAAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3657053 original size:116 final size:116
Alignment explanation
Indices: 3656927--3657157 Score: 399
Period size: 116 Copynumber: 2.0 Consensus size: 116
3656917 GTATAGCTGA
* * * *
3656927 TATATATATATATATATATATATATATTTATATTTGGAAAAATAGGAAACATGTGGTTGGCAATG
1 TATATATATATATATATATATATATATATATATTTGGAAAAATAAGAAACATATGGTTCGCAATG
*
3656992 AGTTGAAAGAGGAAGGGAATGGAAAGTTAAAGGAGGCGACCTAAAGGGTTG
66 AATTGAAAGAGGAAGGGAATGGAAAGTTAAAGGAGGCGACCTAAAGGGTTG
3657043 TATATATATATATATATATATATATATATATATTTGGAAAAATAAGAAACATATGGTTCGCAATG
1 TATATATATATATATATATATATATATATATATTTGGAAAAATAAGAAACATATGGTTCGCAATG
* *
3657108 AATTGAAAGAGGAAGGGAATGGTAAGTTAAAGGAGGCGGCCTAAAGGGTT
66 AATTGAAAGAGGAAGGGAATGGAAAGTTAAAGGAGGCGACCTAAAGGGTT
3657158 ATTTCCATGG
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 108 1.00
ACGTcount: A:0.42, C:0.05, G:0.24, T:0.29
Consensus pattern (116 bp):
TATATATATATATATATATATATATATATATATTTGGAAAAATAAGAAACATATGGTTCGCAATG
AATTGAAAGAGGAAGGGAATGGAAAGTTAAAGGAGGCGACCTAAAGGGTTG
Found at i:3666098 original size:127 final size:128
Alignment explanation
Indices: 3665741--3666125 Score: 727
Period size: 128 Copynumber: 3.0 Consensus size: 128
3665731 ATAAAATAAA
*
3665741 GAAACTGTAGAAATTTTCTTGCAAAATTCTTTTTTTTTTTTGTGTATTGTGATTGTATTTGTCTA
1 GAAACTATAGAAATTTTCTTGCAAAATTCTTTTTTTTTTTTGTGTATTGTGATTGTATTTGTCTA
*
3665806 TTGCTCTCTTGATTACTGGTTTTCATATAGAGCCTACAAGTGCATAGATCAAGTAATAAAGTG
66 TTGCTCTCTTGATTACTGATTTTCATATAGAGCCTACAAGTGCATAGATCAAGTAATAAAGTG
*
3665869 GAAACTATAAAAATTTTCTTGCAAAATTCTTTTTTTTTTTTGTGTATTGTGATTGTATTTGTCTA
1 GAAACTATAGAAATTTTCTTGCAAAATTCTTTTTTTTTTTTGTGTATTGTGATTGTATTTGTCTA
*
3665934 TTGCTCTCTTGATTACTGATTTTCATATAGAGTCTACAAGTGCATAGATCAAGTAATAAAGTG
66 TTGCTCTCTTGATTACTGATTTTCATATAGAGCCTACAAGTGCATAGATCAAGTAATAAAGTG
3665997 GAAACTATAGAAATTTTCTTGCAAAATTC-TTTTTTTTTTTGTGTATTGTGATTGTATTTGTCTA
1 GAAACTATAGAAATTTTCTTGCAAAATTCTTTTTTTTTTTTGTGTATTGTGATTGTATTTGTCTA
3666061 TTGCTCTCTTGATTACTGATTTTCATATAGAGCCTACAAGTGCATAGATCAAGTAATAAAGTG
66 TTGCTCTCTTGATTACTGATTTTCATATAGAGCCTACAAGTGCATAGATCAAGTAATAAAGTG
3666124 GA
1 GA
3666126 CTAGTCTAAG
Statistics
Matches: 251, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
127 99 0.39
128 152 0.61
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.44
Consensus pattern (128 bp):
GAAACTATAGAAATTTTCTTGCAAAATTCTTTTTTTTTTTTGTGTATTGTGATTGTATTTGTCTA
TTGCTCTCTTGATTACTGATTTTCATATAGAGCCTACAAGTGCATAGATCAAGTAATAAAGTG
Found at i:3671966 original size:24 final size:24
Alignment explanation
Indices: 3671917--3671965 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
3671907 TCCTAAAGTC
* *
3671917 AAGAATTAAAAGATTGTAAAGTAA
1 AAGAATTAAAAGATTGCAAAGAAA
3671941 AAGAATT-AAAGATTGCAAAGAAA
1 AAGAATTAAAAGATTGCAAAGAAA
3671964 AA
1 AA
3671966 ATCCTTAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.61, C:0.02, G:0.16, T:0.20
Consensus pattern (24 bp):
AAGAATTAAAAGATTGCAAAGAAA
Found at i:3672786 original size:29 final size:29
Alignment explanation
Indices: 3672744--3672804 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
3672734 GTCATTGTGC
3672744 AAGTCATTCTCTTCATCTCTAAGCAAAGG
1 AAGTCATTCTCTTCATCTCTAAGCAAAGG
3672773 AAGTCATTCTCTTCATCTCTAAGCAAAGG
1 AAGTCATTCTCTTCATCTCTAAGCAAAGG
3672802 AAG
1 AAG
3672805 CATGGTTATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (29 bp):
AAGTCATTCTCTTCATCTCTAAGCAAAGG
Found at i:3673467 original size:28 final size:28
Alignment explanation
Indices: 3673436--3673518 Score: 139
Period size: 28 Copynumber: 3.0 Consensus size: 28
3673426 TTAGATCTAA
* *
3673436 AGGGCATTCAAGTCATTTTTTTCATTAT
1 AGGGCACTCTAGTCATTTTTTTCATTAT
3673464 AGGGCACTCTAGTCATTTTTTTCATTAT
1 AGGGCACTCTAGTCATTTTTTTCATTAT
*
3673492 AGGGCACTCTAGTCATTTTGTTCATTA
1 AGGGCACTCTAGTCATTTTTTTCATTA
3673519 GAGACTATTA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.45
Consensus pattern (28 bp):
AGGGCACTCTAGTCATTTTTTTCATTAT
Found at i:3675294 original size:10 final size:10
Alignment explanation
Indices: 3675279--3675306 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
3675269 GGTGAAGATA
3675279 AGGTCAAAAT
1 AGGTCAAAAT
3675289 AGGTCAAAAT
1 AGGTCAAAAT
3675299 AGGTCAAA
1 AGGTCAAA
3675307 TTATAGAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.21, T:0.18
Consensus pattern (10 bp):
AGGTCAAAAT
Found at i:3686162 original size:58 final size:58
Alignment explanation
Indices: 3686072--3686188 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 58
3686062 ACATAGTTTC
*
3686072 TATAGCTACATTCTAATGTGATGGTTGCATAAGTGATCCTTTGACTTGTCATTACTTA
1 TATAGCTACATTCTAATGTGATGGTTGCATAAGTGATCCTTTAACTTGTCATTACTTA
*
3686130 TATAGCTACATTCTCATGTGATGGTTGCATAAGTGATCCTTTAACTTGTCATTACTTA
1 TATAGCTACATTCTAATGTGATGGTTGCATAAGTGATCCTTTAACTTGTCATTACTTA
3686188 T
1 T
3686189 GATCTTATAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (58 bp):
TATAGCTACATTCTAATGTGATGGTTGCATAAGTGATCCTTTAACTTGTCATTACTTA
Found at i:3688206 original size:3 final size:3
Alignment explanation
Indices: 3688198--3688252 Score: 83
Period size: 3 Copynumber: 17.7 Consensus size: 3
3688188 GATTTTTAAG
*
3688198 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CATA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TTA
3688245 TTA TTA TT
1 TTA TTA TT
3688253 TTTTTAAGAA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
3 44 0.92
4 4 0.08
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:3690019 original size:4 final size:4
Alignment explanation
Indices: 3690006--3690039 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
3689996 TTTTCAAAGC
3690006 TTTA -TTA TTTA TTTA TTTA TTTA TTTA TATTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TT
3690040 ATTATTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
4 21 0.75
5 4 0.14
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:3690041 original size:12 final size:13
Alignment explanation
Indices: 3690008--3690052 Score: 60
Period size: 12 Copynumber: 3.6 Consensus size: 13
3689998 TTCAAAGCTT
3690008 TATTATTTATTTA
1 TATTATTTATTTA
3690021 T-TTATTTATTTA
1 TATTATTTATTTA
3690033 TATTA-TTA-TTA
1 TATTATTTATTTA
3690044 TTATTATTT
1 -TATTATTT
3690053 GGCTTTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
11 3 0.10
12 20 0.69
13 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TATTATTTATTTA
Found at i:3690810 original size:32 final size:32
Alignment explanation
Indices: 3690772--3690929 Score: 103
Period size: 32 Copynumber: 5.0 Consensus size: 32
3690762 GACTTTTCAA
*
3690772 TGCCAGCTAATACTAAGCTTAAATTTCATTAG
1 TGCCAGCTAATACTAGGCTTAAATTTCATTAG
* * *
3690804 TGCCAGCTAA-AATAGGCTTAAAATTTCATCAA
1 TGCCAGCTAATACTAGGCTT-AAATTTCATTAG
* * * *
3690836 TACCAGCTAA-ACTGGGCTTTAATTT--TTAT
1 TGCCAGCTAATACTAGGCTTAAATTTCATTAG
** * * *
3690865 TGATTATCTAAT-CTAAGCTTAAATTTGCATTGG
1 TG-CCAGCTAATACTAGGCTTAAATTT-CATTAG
* *
3690898 TGCTAGCT-ATACTAGGTTTAAATTTTCATTAG
1 TGCCAGCTAATACTAGGCTTAAA-TTTCATTAG
3690930 GTGCTAACAA
Statistics
Matches: 94, Mismatches: 24, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
29 3 0.03
30 16 0.17
31 14 0.15
32 54 0.57
33 7 0.07
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (32 bp):
TGCCAGCTAATACTAGGCTTAAATTTCATTAG
Found at i:3690951 original size:32 final size:31
Alignment explanation
Indices: 3690880--3690964 Score: 80
Period size: 32 Copynumber: 2.7 Consensus size: 31
3690870 ATCTAATCTA
* * *
3690880 AGCTTAAATTTGCATTGGTGCTAGCTATACT
1 AGCTTAAATTTGCATTGGTGCTAACAACACT
* * *
3690911 AGGTTTAAATTTTCATTAGGTGCTAACAACATT
1 A-GCTTAAATTTGCATT-GGTGCTAACAACACT
**
3690944 AGCTTAAATACGCATTGGTGC
1 AGCTTAAATTTGCATTGGTGC
3690965 CAAATAATTT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
31 6 0.14
32 24 0.57
33 12 0.29
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.36
Consensus pattern (31 bp):
AGCTTAAATTTGCATTGGTGCTAACAACACT
Found at i:3691115 original size:33 final size:33
Alignment explanation
Indices: 3691010--3691298 Score: 146
Period size: 33 Copynumber: 9.0 Consensus size: 33
3691000 GGCAACTAAG
* * *
3691010 TTGGGCTTAAATCTTTTCATT-GATGCCAACTACT
1 TTGGGCTTAAA--TTTTCATTAGGTGCCAGCTACA
* * *
3691044 TTGGGCTTAAATTTGCATTGGTGAGTGCTAGCTACA
1 TTGGGCTTAAATTTTCATT--AG-GTGCCAGCTACA
*
3691080 TTGGGCTTATATTTGT-ATTAGGTGCCAGCTACA
1 TTGGGCTTAAATTT-TCATTAGGTGCCAGCTACA
3691113 TTGGGCTTAAATTTTCATTAGGT----GCTA-A
1 TTGGGCTTAAATTTTCATTAGGTGCCAGCTACA
* * **
3691141 TCTAGGCTTAAAACTTT-ATT-GGTGCCAAATA-A
1 T-TGGGCTT-AAATTTTCATTAGGTGCCAGCTACA
* * *
3691173 TCTAGGCTTAAA-TGTCATTAGGTGCCAGCTAGA
1 T-TGGGCTTAAATTTTCATTAGGTGCCAGCTACA
* * * * *
3691206 CTGGGCTTAAACTTTAATTAGATGCTAGCTA-A
1 TTGGGCTTAAATTTTCATTAGGTGCCAGCTACA
* * *
3691238 TTTGGGCTTAAA---TC-TTGGGTGCTATCTA-A
1 -TTGGGCTTAAATTTTCATTAGGTGCCAGCTACA
*
3691267 TTAGGCTTAAATTTTCATT-GAGTGCCAGCTAC
1 TTGGGCTTAAATTTTCATTAG-GTGCCAGCTAC
3691299 TCTAGGCTTA
Statistics
Matches: 201, Mismatches: 31, Indels: 47
0.72 0.11 0.17
Matches are distributed among these distances:
28 15 0.07
29 25 0.12
30 9 0.04
31 9 0.04
32 49 0.24
33 57 0.28
34 12 0.06
35 1 0.00
36 24 0.12
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (33 bp):
TTGGGCTTAAATTTTCATTAGGTGCCAGCTACA
Found at i:3691149 original size:29 final size:29
Alignment explanation
Indices: 3691116--3691197 Score: 80
Period size: 32 Copynumber: 2.7 Consensus size: 29
3691106 AGCTACATTG
3691116 GGCTTAAATTTTCATTAGGTGC-TAATCTA
1 GGCTTAAA-TTTCATTAGGTGCATAATCTA
3691145 GGCTTAAAACTTT-ATT-GGTGCCAAATAATCTA
1 GGCTT-AAA-TTTCATTAGGTG-C--ATAATCTA
*
3691177 GGCTTAAATGTCATTAGGTGC
1 GGCTTAAATTTCATTAGGTGC
3691198 CAGCTAGACT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
28 4 0.09
29 9 0.20
30 8 0.18
31 7 0.16
32 16 0.36
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.37
Consensus pattern (29 bp):
GGCTTAAATTTCATTAGGTGCATAATCTA
Found at i:3691555 original size:22 final size:22
Alignment explanation
Indices: 3691530--3691571 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
3691520 TATGATTACA
*
3691530 TGCCAACTAAACTGGGCTTATG
1 TGCCAACTAAACTAGGCTTATG
*
3691552 TGCCAGCTAAACTAGGCTTA
1 TGCCAACTAAACTAGGCTTA
3691572 AAGTTTCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (22 bp):
TGCCAACTAAACTAGGCTTATG
Found at i:3691720 original size:94 final size:94
Alignment explanation
Indices: 3691551--3691776 Score: 276
Period size: 94 Copynumber: 2.4 Consensus size: 94
3691541 CTGGGCTTAT
* *
3691551 GTGCCAGCTAAACTAGGCTTAAAGTTT-CATTAGTGCCAGATAATCTAGACTTAAATCTTTTCGA
1 GTGCCAGCTAAATTAGGCTTAAA-TTTGCATTAGTGCCAGATAATCTAGACTTAAATCTTTTCAA
** *
3691615 TGCCAACTAATACTAGGCTTTAAAACTTGG
65 TAACAACTAATACTAGGCTTTAAAACTTGA
* * *
3691645 GTGCCAGCTAAATTAGGCTTAAATTTGCTTTAGTGCTAGATAATCTA-AGCTTAAGTCTTTTCAA
1 GTGCCAGCTAAATTAGGCTTAAATTTGCATTAGTGCCAGATAATCTAGA-CTTAAATCTTTTCAA
** *
3691709 TAACAGTTAATACTAGGCTTTGAAACTTGA
65 TAACAACTAATACTAGGCTTTAAAACTTGA
* * * * *
3691739 GTTCCAACTAAATTAGACTTAAATTTGTATTGGTGCCA
1 GTGCCAGCTAAATTAGGCTTAAATTTGCATTAGTGCCA
3691777 ACTAAAATGG
Statistics
Matches: 112, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
93 4 0.04
94 108 0.96
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (94 bp):
GTGCCAGCTAAATTAGGCTTAAATTTGCATTAGTGCCAGATAATCTAGACTTAAATCTTTTCAAT
AACAACTAATACTAGGCTTTAAAACTTGA
Found at i:3691871 original size:32 final size:32
Alignment explanation
Indices: 3691795--3692018 Score: 143
Period size: 32 Copynumber: 7.0 Consensus size: 32
3691785 GGGCTCATTA
* * * * *
3691795 GGTGCTAGCTAAACTAGACTTAAATTTTCATT
1 GGTGCCAGCTAATCTGGGCTTAAATTTTTATT
* *
3691827 AGGTGCCAGCTAATCTTGGCTTGAATTTTTATT
1 -GGTGCCAGCTAATCTGGGCTTAAATTTTTATT
* * *
3691860 GATGCCAGCTAA-CTGGGCTCAAACTTTTATT
1 GGTGCCAGCTAATCTGGGCTTAAATTTTTATT
* **
3691891 GGTGCTAGCTATAT-TGGGCTTAAATTTTCGTT
1 GGTGCCAGCTA-ATCTGGGCTTAAATTTTTATT
* * * * *
3691923 GGTGCTAGCTAAACTTGGCTTAAA-CTTCATT
1 GGTGCCAGCTAATCTGGGCTTAAATTTTTATT
* * * * *
3691954 GATGCTAGCTACAT-TGGGCTAAAACTTTCATT
1 GGTGCCAGCTA-ATCTGGGCTTAAATTTTTATT
* * *
3691986 GGTGCCAACTAAAT-TGGGCCTAAATTTTCATT
1 GGTGCCAGCT-AATCTGGGCTTAAATTTTTATT
3692018 G
1 G
3692019 AAAATTAACG
Statistics
Matches: 153, Mismatches: 32, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
31 48 0.31
32 78 0.51
33 27 0.18
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (32 bp):
GGTGCCAGCTAATCTGGGCTTAAATTTTTATT
Found at i:3691911 original size:63 final size:63
Alignment explanation
Indices: 3691844--3692004 Score: 171
Period size: 63 Copynumber: 2.6 Consensus size: 63
3691834 AGCTAATCTT
* * * * *
3691844 GGCTTGAATTTTTATTGATGCCAGCT-AACTGGGCTCAAACTTTTATTGGTGCTAGCTATATTG
1 GGCTTAAATTTTCATTGATGCCAGCTAAACTGGGCTCAAAC-TTCATTGATGCTAGCTACATTG
* * * * *
3691907 GGCTTAAATTTTCGTTGGTGCTAGCTAAACTTGGCTTAAACTTCATTGATGCTAGCTACATTG
1 GGCTTAAATTTTCATTGATGCCAGCTAAACTGGGCTCAAACTTCATTGATGCTAGCTACATTG
* * * * *
3691970 GGCTAAAACTTTCATTGGTGCCAACTAAATTGGGC
1 GGCTTAAATTTTCATTGATGCCAGCTAAACTGGGC
3692005 CTAAATTTTC
Statistics
Matches: 80, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
63 68 0.85
64 12 0.15
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (63 bp):
GGCTTAAATTTTCATTGATGCCAGCTAAACTGGGCTCAAACTTCATTGATGCTAGCTACATTG
Found at i:3691972 original size:95 final size:96
Alignment explanation
Indices: 3691789--3692017 Score: 273
Period size: 95 Copynumber: 2.4 Consensus size: 96
3691779 TAAAATGGGC
* * * * **
3691789 TCATTAGGTGCTAGCTAAACTAGACTTAAATTTTCATTAGGTGCCAGCTAATCTTGGCTTGAATT
1 TCATT-GGTGCTAGCTAAATTGGGCTTAAATTTTCATTAGGTGCCAGCTAAACTTGGCTTGAAAC
* *
3691854 TTTATTGATGCCAGCTAACTGGGCTCAAACTT
65 TTCATTGATGCCAGCTAACTGGGCTAAAACTT
* * * *
3691886 TTATTGGTGCTAGCTATATTGGGCTTAAATTTTCGTT-GGTGCTAGCTAAACTTGGCTT-AAACT
1 TCATTGGTGCTAGCTAAATTGGGCTTAAATTTTCATTAGGTGCCAGCTAAACTTGGCTTGAAACT
* *
3691949 TCATTGATGCTAGCTACATTGGGCTAAAACTT
66 TCATTGATGCCAGCTA-ACTGGGCTAAAACTT
* * *
3691981 TCATTGGTGCCAACTAAATTGGGCCTAAATTTTCATT
1 TCATTGGTGCTAGCTAAATTGGGCTTAAATTTTCATT
3692018 GAAAATTAAC
Statistics
Matches: 111, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
94 17 0.15
95 63 0.57
96 27 0.24
97 4 0.04
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (96 bp):
TCATTGGTGCTAGCTAAATTGGGCTTAAATTTTCATTAGGTGCCAGCTAAACTTGGCTTGAAACT
TCATTGATGCCAGCTAACTGGGCTAAAACTT
Found at i:3692174 original size:22 final size:22
Alignment explanation
Indices: 3692149--3692205 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
3692139 CATTTTCAAA
3692149 TAATCTAGGCTTACGTG-TCAGC
1 TAATCTAGGCTTACGTGCT-AGC
*
3692171 TAATCT-GAGCTTATGTGCTAGC
1 TAATCTAG-GCTTACGTGCTAGC
3692193 TAAAT-TAGGCTTA
1 T-AATCTAGGCTTA
3692206 AATTTTGATT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
21 1 0.03
22 24 0.80
23 5 0.17
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (22 bp):
TAATCTAGGCTTACGTGCTAGC
Done.