Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 4 of 93
Found at i:515384 original size:871 final size:869
Alignment explanation
Indices: 512659--518513 Score: 7070
Period size: 871 Copynumber: 6.7 Consensus size: 869
512649 NNNNNNNTGT
* * *
512659 AATTCATACAATGG-CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGAATCATTTTCTATT
1 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
512723 TTTCAT-ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAAGG-GTTTT
66 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAG-AAGGAGTTTT
* * * *
512786 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGTACAAAAAAATTCAGGTAAA
130 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
512851 AACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATG
195 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
512916 GCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
260 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
512981 ATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCACAA
325 ATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A
* * * * * *
513045 CCCCCCCGCCCCACAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGAC
389 CCCCCCCGCCCCCCAATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGAT
** * *
513110 GATGGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCTTAGCCTAGCATGTGCACCCAC
454 GATGGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
*
513175 AACCCTCGGTCCAGTCCGATCTTACTCTGGGAATGAAATCCGTATGCTTAAACTGGGAATGAACT
519 AACCCTCGGTCC-G---G-TCTGA-TCT-----T---A--C--A--C-T--A---GGAATGAACT
* * * *
513240 CCGTATGCCTAAGTCAACCCACGAACGAGCGTGCAGGCGCTTAGCCGGCCAAAGGGGCGGGATGC
558 CCGTATGCCTAAGTCAACCCACGAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCAGGATGC
* * * * * * * * * * *
513305 ACAAGCCGGGGATCGACTGGGTCCCCCCTTATGTGCTGCTGATCCTACT-ATCGTATCCCTCGGT
623 GCAAGCCGGGGATCGGCTAGGTCCCCCC-TACGTGCTACCGATCCTGCTGCT-GCAACCCTCAGT
** * * *
513369 CTGATCTGATCTTAGACTGGGAATAGAACTTCCGAGTATGCCT-AGCCAACTGATTG-AACAAGC
686 CTGATCCAATCTTAGACTGGGAAT-GAAC-TCC--GTATGCCTAAGCCAACCGA-CGAAACGAGC
** * *
513432 GGGCGGGCAGGGCACTACACCGGCCCAGAGAGGCCGGGATGTGCAAACCGGTGGATCTTGA-AGG
746 GGGCGGGC-GGGCACTACGTCGG-CCAGAGAGG-CGGGATGCGCAAGCC-GTGGATC--GATAGG
* * * * * *
513496 GTGGTAAGTGGGTTTAGGCACAGCTTCATATTTCTACTATGCCAATACCATTTTTATGGCTTCTA
805 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
** *
513561 AATTCATACAATGGTCTTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
1 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * *
513626 TTTTAGGATTTTTGAAACTTTATACGATTCGAGATTTTTTTCAAATTTTTTCAGAAGGAGTTTTG
66 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* * * * * *
513691 GTCCCAAACTTGGTAGATGTGACCCTTGTATTTTTTTTGGCATGCACAAAAAACTTCAGCTAGAA
131 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
513756 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCACACACTTTAATGG
196 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
513821 CTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
261 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
513886 TGAGGGATAGGGGGT-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
326 TGAGGGATA-GGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
513950 CCCCCCGCCCCCCAATCGTCAGAACTCGAATGACGTCGGTCAGGTTCT-C--C---G----G-TG
390 CCCCCCGCCCCCCAATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATG
* *
514004 ATGGTGCCCTGGGCGAAAAAAAATGTGGTACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCA
455 ATGGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCA
*
514069 ACCCTCGGTGCGGTCTGATCTTACACTGGGAGTGAACTTCGGATGCTTAGACTGGGATGAACTCC
520 ACCCTCGGTCCGGTCTGATCTT--AC---------AC-T---A-G----GA-----ATGAACTCC
* **
514134 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGACAGGCAGGATGCG
560 GTATGCCTAAGTCAACCCACG-AACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCAGGATGCG
* * * * * * *
514199 TAAGCCGAGGATC-GATCAAGTCCCCACCTACGTGCTGCCGATCCTACTAC--CATTACCCTCAG
624 CAAGCCGGGGATCGGCT-AGGTCCCC-CCTACGTGCTACCGATCCTGCTGCTGCA--ACCCTCAG
* *** * *
514261 TCTGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACC-AGCGAAACGAGCTGG
685 TCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAACGAGCGGG
* * * *
514325 CGGTCAGGCACTACG-CTGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGG
749 CGGGCGGGCACTACGTC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
514389 TGGGTTTAGGCACAACTTCATATTTCTGCCATGCCAATGCCATTTTTATGCCTTATA
813 TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
* * *
514446 AATTCATACAATTGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATT
1 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * *
514511 TTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAAAATTTTTCAGATGGAATTTTG
66 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* * * * *
514576 GCCCCAAGCTTGGTAGATGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTGAGCTAAAA
131 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
514641 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGG
196 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
514706 CTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGA
261 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
514771 TGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
326 TGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* ** * *
514835 CCCCTGCCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTGCGATGA
391 CCCCCGCCCCCCAATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGA
* * *
514900 TGGTACCCTGGGCGAAAAACAAATCCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGGCA
456 TGGTGCCCTGGGCGAAAAA-AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCA
* *
514965 ACCCTCGGTCCGGTCTGATCTTACACTAGGAATGAACTCCGTATGCCTAAGTTAACCCACAGAAT
520 ACCCTCGGTCCGGTCTGATCTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAC-GAAC
* * * * *
515030 GAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATTGGCTGGGTCCCC
584 GAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCTAGGTCCCC
* * * * *
515095 CACTACGTGCTACTGATACTGTTGCTGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAA
649 C-CTACGTGCTACCGATCCTGCTGCTGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAA
* * *
515160 CTCTGTATGCCTAAGCCAACCGACGAAACGAGTGGGTGGGCGGGCACTACGTCGGCCAGAGAGGC
713 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGC
* * *
515225 GGGATGCGCAAGCCGTGGATCGATAGGCTGGTGGGTGGGTTTAGGAACATCTTCATATTTCTGCC
778 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
515290 ATGCCAATGCCATTTTTATGGCTTGTA
843 ATGCCAATGCCATTTTTATGGCTTGTA
*
515317 AATTCATACAATGGTCTCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
1 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
515382 TTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTCTG
66 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* * *
515447 GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCATAAAAAAATTCAGCTAAAA
131 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
515512 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTCAATG
196 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATG
* * * ** * * *
515576 GCTACTGACAACAAACCTGTGAAATCTCAGTTGGTCTTTAAGGGGGTCTGAGTTCTCAAGGTTTG
260 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
515641 ATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCATGTGTGCACAC
325 ATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * *
515705 CCCCCAC-CCCCCCAATCGCCAAAACCCCAATGCTGTCGGTCAGGTTCTCCGATGATGCTCCGAC
390 CCCCC-CGCCCCCCAATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGAT
* ** * * * * * *
515769 GATCGTGCCCCAGGCGAAAAAAAAATGTGCCACCAGCACATGCTCGAGCCAAGCATGTGAACCCA
454 GATGGTGCCCTGGGCG-AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCG
* * * *
515834 CAACCCTCGGTCCAGTCTGATCTTACACTAGGTATGAAGTCCGTATGCCTAAGTAAACCCACGGA
518 CAACCCTCGGTCCGGTCTGATCTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAC-GA
* * *
515899 ACGAGCGTGCGGGCGCTCAGCCAACCAGAGGGGCAGGATGCGCAAGTCGGGGATCGG-TCAGGTC
582 ACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCT-AGGTC
** *** *
515963 CCCCACTGTGTGCTACCGATCCTGCTGCCATAACCCTCAGT-TCAATCCAATCTTAGACTGGGAA
646 CCCC-CTACGTGCTACCGATCCTGCTGCTGCAACCCTCAGTCT-GATCCAATCTTAGACTGGGAA
* * * * * ** *
516027 TGAACTCCGTATGCCTAAGACAACCGACAAAATGAGCGGGTGGGCGGGCACTACGCCGGCTTGAA
709 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAG
* * * *
516092 AGGCGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAAGTGGGTTTAGGCACAGCTTCATATTTT
774 AGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
**
516157 TGCTGTGCCAATGCCATTTTTATGGCTTGTA
839 TGCCATGCCAATGCCATTTTTATGGCTTGTA
* * *
516188 AATTCATACAACGATCTCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
1 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
516253 TTTCACGATTTTTGAAACTTTTTATGGTTCGGGTTTTTTTTTAAATTTTTTCAGAAGGAGTTTTG
66 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* *
516318 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATACAGCTTAAA
131 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * * * *
516383 ACTCAAAGTTTACAGGATTTTGTGATCACTTGAAAAAAGTGTCCCCATCTCAGACACTTTAATGG
196 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
516448 CTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
261 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
516513 TGAGGGATA-GGGTGCCAATATAAGGGCCAACTACAAGCACCCATTGCACATCATGTGTGCACA-
326 TGAGGGATAGGGGT-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* ** * *
516576 CCCCCTGCCCCCCAATCGTTTGAACCCCAATGCCGTCGGTCCGGTTCTCCGACGATGCTCTGATG
390 CCCCCCGCCCCCCAATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATG
* ** * * *
516641 ATGGCGCCCCAGGCAAAAAAAAAATGCGGCACCAGCACATGCTCC-AGCCCAGCATGTGCACTCT
455 ATGGTGCCCTGGGC-GAAAAAAAATGCGGCACCAGCACATGC-CCGAGCCCAGCATGTGCACCCG
* *** ** ** * * **
516705 TAAAAATCGGTCTAGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCCGTGGA
518 CAACCCTCGGTCCGGTCTGATCTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCC-ACGA
* * * * *
516770 ACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCAGGATGCGCAAGTCGAGGATCGG-TTGGTCC
582 ACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCTAGGTCC
** * ** * * * * *
516834 CCCCTGTGTGTTGTCGATCCTACTGCTGCAACCCT-TGATCCGGTCCAATCTTAAACTGGGAATG
647 CCCCTACGTGCTACCGATCCTGCTGCTGCAACCCTCAG-TCTGATCCAATCTTAGACTGGGAATG
* * * *
516898 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGTCGGGCGAGCACTATGTCGACCAGAGAG
711 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * *
516963 GTGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG
776 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
** **
517028 CTGTGCCAATGAAATTTTTATGGCTTGTA
841 CCATGCCAATGCCATTTTTATGGCTTGTA
* * *
517057 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTACT
1 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
517122 TTTCATGATTTTTGAAACTTTTTACGGTTCTGAATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
66 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
*
517187 GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
131 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
517252 ACTCGAAGTGTACATGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGG
196 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
** * *
517317 CTACTAACAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGA
261 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * * *
517382 TGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCACACATCATGTGCACACAAC
326 TGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* ** * * *
517447 CCCTCG-CCCCCAATCGTCAGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGACGCTCCG-TCG
391 CCCCCGCCCCCCAATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGAT-G
* * * *
517510 ATGGTG-CCTCAGGC-AAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGT
455 ATGGTGCCCT-GGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
* *
517573 AACCCTCAGTCTGATCCGATCTTACACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACT
519 AACCCTC-G---G-TCCG---GT---CT--G-AT---CT---TA--C----ACTAGGAATGAACT
* * * * * * *
517638 CCGTATG-CTAAGTCAACCCACAAAACGAGCATGCAGGTGCTCAGTCGGCCAAAGGGCCAGGATG
558 CCGTATGCCTAAGTCAACCCAC-GAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCAGGATG
* * *
517702 CACAAGCCGGGGATCGGCCAGGTCCCCCCTACGTGCTACCGATCCTGCTGCTGTAACCCTCAGTC
622 CGCAAGCCGGGGATCGGCTAGGTCCCCCCTACGTGCTACCGATCCTGCTGCTGCAACCCTCAGTC
* * * * * *
517767 TGATCCCATCTTAGGCTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAATGAGCGGGCGA
687 TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* ** * * * * *
517832 GCGGACACTATATCAGCCAGAGAGACGGGATGCGCAAGCCGTGTATGGATAGGGTGGCAGGTGGG
752 GCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
517897 TTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTACGGCTTGTA
817 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
* *
517950 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTTTT
1 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
518015 TTTCATGATTTTTGAAACTTTTTATGATTCGAGATTTTTTTAAAATATTTTT-AGGAGGATTTTT
66 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAAT-TTTTTCAGAAGGAGTTTT
* * *
518079 GGCCCCAAACTTCGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATTCAGCTAA
130 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAA
*
518144 AAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
194 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
518209 GGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
259 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
518274 GATGAGGGATAGGGCG-CCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
324 GATGAGGGATAGGG-GTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
518338 ACCCCCCCCGCCCCCCAAT-GTCGGAACCCCAATGCCGTTGGTTAAGTTCTCCGACGATGCTCCG
388 A-CCCCCCCGCCCCCCAATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
** * * * *
518402 GCGATGGTGCCCCGGGTGAAAAAAATAT-C-ACACCAGCACATGCCCGAGCCCAACATGTGCACC
452 ATGATGGTGCCCTGGGCGAAAAAAA-ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
* * * * *
518465 CGTAACCCTCGGTCCGATCCGATCTTACACTGGGAATG-ACTTCGTATGC
516 CGCAACCCTCGGTCCGGTCTGATCTTACACTAGGAATGAACTCCGTATGC
518514 TTAGACTGGA
Statistics
Matches: 4313, Mismatches: 529, Indels: 255
0.85 0.10 0.05
Matches are distributed among these distances:
866 2 0.00
867 46 0.01
868 14 0.00
869 600 0.14
870 71 0.02
871 1498 0.35
872 59 0.01
873 3 0.00
875 3 0.00
876 2 0.00
878 3 0.00
879 1 0.00
880 1 0.00
881 7 0.00
882 2 0.00
883 1 0.00
884 54 0.01
885 416 0.10
886 9 0.00
887 22 0.01
888 14 0.00
889 21 0.00
890 24 0.01
891 4 0.00
892 96 0.02
893 535 0.12
894 209 0.05
895 114 0.03
896 79 0.02
897 2 0.00
898 1 0.00
901 1 0.00
902 14 0.00
903 52 0.01
904 294 0.07
905 39 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (869 bp):
AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGCCCCCCAATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGA
TGGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAA
CCCTCGGTCCGGTCTGATCTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAACGA
GCGTGCAGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCTAGGTCCCCCC
TACGTGCTACCGATCCTGCTGCTGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGG
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
CCAATGCCATTTTTATGGCTTGTA
Found at i:517632 original size:26 final size:26
Alignment explanation
Indices: 517593--517646 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
517583 CTGATCCGAT
517593 CTTACACTGAGAATGAACTCCATATG
1 CTTACACTGAGAATGAACTCCATATG
* * *
517619 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCATATG
517645 CT
1 CT
517647 AAGTCAACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCATATG
Found at i:518522 original size:25 final size:26
Alignment explanation
Indices: 518488--518539 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
518478 CCGATCCGAT
518488 CTTACACTGGGAATG-ACT-TCGTATG
1 CTTACACT-GGAATGTACTCTCGTATG
*
518513 CTTAGACTGGAATGTACTCTCGTATG
1 CTTACACTGGAATGTACTCTCGTATG
518539 C
1 C
518540 CTAATCAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 6 0.25
25 10 0.42
26 8 0.33
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (26 bp):
CTTACACTGGAATGTACTCTCGTATG
Found at i:521259 original size:26 final size:26
Alignment explanation
Indices: 521230--521282 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
521220 CTGGTCCGAT
521230 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
521256 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
521282 C
1 C
521283 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:522120 original size:26 final size:26
Alignment explanation
Indices: 522084--522134 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
522074 CTGGTCTGAT
*
522084 CTTACACTGGGAATGAACTCCGTATA
1 CTTACACTGGGAATAAACTCCGTATA
* *
522110 CTTAGACTGGGAATAAACTTCGTAT
1 CTTACACTGGGAATAAACTCCGTAT
522135 GCCTAAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATA
Found at i:529555 original size:26 final size:26
Alignment explanation
Indices: 529526--529578 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
529516 CTGGTCTGAT
* *
529526 CTTACTCTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
529552 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
529578 C
1 C
529579 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:531724 original size:890 final size:889
Alignment explanation
Indices: 530423--532813 Score: 3321
Period size: 890 Copynumber: 2.7 Consensus size: 889
530413 CCAGTCCGAT
* * * * *
530423 CTTACACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGAGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* *
530488 CGGCCAGAGGGGCAGGAT-CTGCAAGTCGGGGATCGATCGGGTCCCCCCCTACGTGCTGCCGATC
66 CGGCCAGAGGGGCAGGATGC-ACAAGTCGGGGATCGACCGGGT-CCCCCCTACGTGCTGCCGATC
* * * * * * *
530552 CTATTGCCACAACCCTCAATCTGATCCGATCTTAGAATGGGAATGAACTCCATATGCCTAAGCCA
129 CTACTACCACAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
530617 TCCGATGAAACGAGCAGGCGGGCGGGCACTACGTTGGCCAGAGAAGCTGGATGCGCAAGCCGTGG
194 ACCGATGAAACGAGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
530682 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTT-TTCCATGTCAATGCCATTTTT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTACCATGCCAATGCCATTTTT
* ** *
530746 ATGGCTTGTAAATTCATGCAATGGTCGATTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTC
323 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* *
530811 GTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGATTCGGGATTTTTTTAAAACTTTTTTAGA
388 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAA-TTTTTTAGA
* *
530876 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTGTGTTGGCATGCATAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
530941 TCAGCTAAAAATTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
517 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
531006 ACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGCGGGTGAGAGTTCT
* * *
531071 CAAGGTTTGATCAGGGTTAGGGAGCCAATATAAGGGCCAACTACTAGCACCCATCGCACATCATG
647 CAAGGTTTGAT-AGGGATAGGGAGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATG
*
531136 TGTGCACAG-C-T-CCCAATCG-CTGGAACCCT-AATGCCACCGGTCAGGTTCTCCAACGATGCT
711 TGCGCACAGCCGTCCCCAATCGTC-GGAA-CCTAAATGCCACCGGTCAGGTTCTCCAACGATGCT
* * ** * * *
531196 CCAGCGATGGTGCCCTGGGTGAAAAAAAATGTAGTACCAGCACGTGCCCGAGCCCAGCAAGTGCA
774 CCAGCAATGGTGCCCCGGCCGAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAAGTGC-
* ** *
531261 TCC-GCAACCCTTGGTCTGGT-TCGATCTTACACTGGGAATGAACTCCGTATG
838 CCCTGCAACCCTTGGTCCAGTCT-GATCTTACACTGGGAATGAACTCCATATG
* *
531312 CTTGGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * *
531377 CGGCCAGAGGGGTAGGATGCACAAGCCGGGGATCGACCGGGTCCTCTCCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGACCGGGTCC-CCCCTACGTGCTGCCGATCC
* * * *
531442 TACTACCATACACCCTCAGTTTGGTTCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 TACTACCACA-ACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
531507 ACCGATGAAACAAGCAGGCAGGTGGGTACTACGTCGGCCAGAGAGGCGGGATGCGCAAGTTGTGG
194 ACCGATGAAACGAGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
531572 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTA
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
*
531637 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTG
324 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
531702 TTTTTTATTTTTCACGATTTTTGAAACCTTTTACGGTTTGGTATTTTTTTTAAATTTTTTTAGAA
389 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTTAAAATTTTTTAGAA
* ** * *
531767 GGATTTTTGGCCAAAAATTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * * *
531832 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGGCCATTTGAAGAAATTATCCCCATTCCAGACA
518 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
531897 CTTGAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGAGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGCGGGTGAGAGTTCTC
* * * *
531962 GAGGTTTGATGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
648 AAGGTTTGATAGGGATAGGGAGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATGTG
** *
532027 CGCACAGCCCCCGTCCCCCCAATCGTCGGAACCTAAATGCCGTCGGTCTGGTTCTCCAACGATGC
713 CGCACAG---CCGT--CCCCAATCGTCGGAACCTAAATGCCACCGGTCAGGTTCTCCAACGATGC
* * * * * *
532092 TTCGGCAATGGTGCCCCGGCCGAAAATAGATGCAGCACCAGCACATGCCCGAGCCCAGTATGTGC
773 TCCAGCAATGGTGCCCCGGCCGAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAAGTGC
* *
532157 CCCTGTAACCCTTGGTCCAGTCTGATCTTACACTGGGAATGAACTCTATATG
838 CCCTGCAACCCTTGGTCCAGTCTGATCTTACACTGGGAATGAACTCCATATG
* * *
532209 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCGACGAAACGAGCGTGCGGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
532274 CGACCAGAGGGGCAGGATGCACAAGTCGGGGATCGACTGGGTCCCCCCTGCATGCTGCCAATCCT
66 CGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGACCGGGTCCCCCCTACGTGCTGCCGATCCT
* * **
532339 ACTACCGCAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 ACTACCACAACCCTCAGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
532403 CCGAGGAAACGAGCGGGCGGGCAGGCACTACGCCGGCCATAGAGGCGGGATGCGCAAGCCGTGGA
195 CCGATGAAACGAGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* * *
532468 TCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACCCTTCCAATGCCATTTTTAT
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
*
532533 AGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * ** * * *
532598 TTTCCATTTTTCATGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTTAAAATTTTTTCAAAAG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTT-AGAAG
* ** * * *
532663 TAGTTTTGGCCCCAAACTTGGTAGATATAATCCTCGTATTTTTGTTGGCATGCACACAAAAATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
532728 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTTAGATA-
519 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
532791 TTTAACGGCTACTGGCAGCAAAC
584 TTTAATGGCTACTGGCAGCAAAC
532814 ATGTGCACCC
Statistics
Matches: 1316, Mismatches: 167, Indels: 34
0.87 0.11 0.02
Matches are distributed among these distances:
888 2 0.00
889 179 0.14
890 452 0.34
891 10 0.01
893 22 0.02
894 29 0.02
895 359 0.27
896 29 0.02
897 232 0.18
898 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGACCGGGTCCCCCCTACGTGCTGCCGATCCT
ACTACCACAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGATGAAACGAGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTAGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGCGGGTGAGAGTTCTCAAG
GTTTGATAGGGATAGGGAGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATGTGCGC
ACAGCCGTCCCCAATCGTCGGAACCTAAATGCCACCGGTCAGGTTCTCCAACGATGCTCCAGCAA
TGGTGCCCCGGCCGAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAAGTGCCCCTGCAA
CCCTTGGTCCAGTCTGATCTTACACTGGGAATGAACTCCATATG
Found at i:532219 original size:26 final size:26
Alignment explanation
Indices: 532183--532238 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
532173 CCAGTCTGAT
*
532183 CTTACACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
532209 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
532235 CTTA
1 CTTA
532239 AGTCAACCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:532886 original size:26 final size:26
Alignment explanation
Indices: 532846--532898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
532836 CTGGTCTGAT
*
532846 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
*
532872 CTTAGACTGGAAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
532898 C
1 C
532899 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGAAATGAACTCCGTATG
Found at i:535991 original size:892 final size:892
Alignment explanation
Indices: 532813--537039 Score: 5706
Period size: 886 Copynumber: 4.7 Consensus size: 892
532803 TGGCAGCAAA
* *
532813 CATGTGCACCCGCAACCCTTGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
1 CATGTGCACCCGTAACCCTTGGTCTGGTCTGATCTTACACTGGGAATGAACTCAGTATGCTTAGA
* *
532878 CTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTGCTCAGCCG-GC
66 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGACC
* * * * * * *
532942 TGAGAGGGAAGGATGCCACAAAC-CGGGATTGGTCAGGTCCCCCCTGCATGCTGCCGATCTTGCT
130 AGAG-GGGCAGGATG-CGCAAGCTGGGGA-TCGTCAGGTCCCCCCTGCATGCTGCCGATCCTGCT
* * * * *
533006 GCCACAACCC-TCAGTTTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG
192 GCCACAACCCTTGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
** * * ** * * *
533070 ACGAAACGAGCGAACGAGCGGGTACTATACCGACCATAGA-GCGGGATACGCAAGCCGTGGATCG
256 ACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
* * * * * ***
533134 ATTGGGTAGGCAGGTGGCGTTTAGGTACATCTTTATATTTCTATTATTGCC-ATGCCATTTTTAT
321 ATAGGGT-GGTAGGTGG-GTTTAGGCACATCTTCATATTTTTGCCA-TGCCAATGCCATTTTTAT
* *
533198 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTCACTGTGAAGTTTCATGCCAAGACAAACT
383 GGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TTCA-TGTGAAGTTTCATGGCAAGAC-GACT
* ** * * *
533263 CGCTTTCTATTTTTTCATTATTTTTGAAAC-TTTTATGCGTTCAGGA-TTTTTAAACTTTTTT-A
445 CGTTTTCTA-TTTTTCACGATTTTTGAAACTTTTTACG-GTTCAAGATTTTTTAAAATTTTTTCA
*
533325 GAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
508 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* *
533390 ATTCAGCTGAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAG
573 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
533455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTT
638 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTT
533520 CTCGAGGTTTGATG-GGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCA
702 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCA
*
533584 TGTGCGCACACCCCCCTGCCCCCCAATCGCCAGAACCGCAATGCTGTCGGCCAGATTCTCCGACG
767 TGTGCGCACA-CCCCCTGCCCCCCAATCGCCAGAACCCCAATGCTGTCGGCCAGATTCTCCGACG
* * *
533649 ATGCTTCGACGATGGTGCCCCA-AGCGAATAAAAATCTGGCACTAGCACATGCCCGAGCCCAG
831 ATGCTCCGACGATGGTGCCCCAGAGC-AAAAAAAATCTGGCACCAGCACATGCCCGAGCCCAG
* ** * ** * * *
533711 CATGTGCACCCGTAACCCTTGGTCTGATCCAATCTTGCACTGATAATGATCTCAGTCTGCTCAGA
1 CATGTGCACCCGTAACCCTTGGTCTGGTCTGATCTTACACTGGGAATGAACTCAGTATGCTTAGA
* * *** *
533776 TTGGGAGTGAAC-CCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTAACGCAGCCGACC
66 CTGGGAATGAACTCC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACC
* * *
533840 AGAGGGGCAAGATGCGCAAGCTGGGGATCGGTCAGGTCCCCCCTGCGTGCTACCGATCCTGCTGC
130 AGAGGGGCAGGATGCGCAAGCTGGGGATC-GTCAGGTCCCCCCTGCATGCTGCCGATCCTGCTGC
*
533905 CACAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG
194 CACAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
533970 AAACGAGCGGGTGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGACGTGGATCGATA
259 AAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* *
534035 GAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATTCCATTTTTATGGCTTG
324 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTG
*
534100 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGACGTTTCATGGCAAGACGACTCGTTTTCTA
389 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * *
534165 TTTTTCACGATTTTTGAAACTTTTTATGGTTCAGAGTTTTTTTAATATTTTTTCAAAAGGAGTTT
454 TTTTTCACGATTTTTGAAACTTTTTACGGTTCA-AGATTTTTTAAAATTTTTTCAGAAGGAGTTT
*
534230 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAA
518 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
** *
534295 AAACTCGAAGTGTACAGGACATTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAAT
583 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * ** * *
534360 GGCTACTAGCAGGAAAGATGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTATTGAGGTTT
648 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTT
* * *
534425 GATGAGAGATAGGGGGCCAATATAAGGGCCAAGT--CTAGCACCCATCGCACATCATGTGAGCGC
712 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAAC-AGCACCCATCGCACATCATGTGCGCAC
* * * * * **
534488 A-------CCCCCCAATCGTC-GAAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGA
776 ACCCCCTGCCCCCCAATCGCCAG-AACCCCAATGCTGTCGGCCAGATTCTCCGACGATGCTCCGA
* *
534545 CGATGGTGCCCC-GAGCAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAG
840 CGATGGTGCCCCAGAGCAAAAAAAATCTGGCACCAGCACATGCCCGAGCCCAG
* * * *
534597 CATGTGCACCCGTAACCCTCGATCTGGTCTGATCTTACTCTGGGAATGAACTCCGTATGCTTAGA
1 CATGTGCACCCGTAACCCTTGGTCTGGTCTGATCTTACACTGGGAATGAACTCAGTATGCTTAGA
* ** *
534662 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTGGGCGCTCAGCCGGCCA
66 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCA
* ** * * *
534727 GAGGGGCAGGATGCGTAAGCTACGGATCATCCAGGTCCCCCCTGCATGTTGCCGATCCTACTGCC
131 GAGGGGCAGGATGCGCAAGCTGGGGATCGT-CAGGTCCCCCCTGCATGCTGCCGATCCTGCTGCC
* * * *
534792 ACAACCCTCGGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCCACCGACGA
195 ACAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * **
534857 AATGTGCGTGCGGGCGGGCACTATGCCGGCCAGTGAGGCAAGATGCGCAAGCCGTGGATCGATAG
260 AACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
* *
534922 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCTATGCCAATGCCATTTTTATGGCTTGT
325 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGT
534987 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
390 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
*
535052 TTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTCTTTTAAAATTTTTTCAGAAGGAGTTTT
455 TTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATT-TTTTAAAATTTTTTCAGAAGGAGTTTT
* *
535117 GTCCCCGAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
519 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
535182 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
584 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
535247 GCTACTGGTAGCAAACCTGTAAAATCTCAAATGATCTTTGAGGGGTTGTGAGTTCTTGAGGTTTG
649 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCGAGGTTTG
* **
535312 ATG-GGGATAGGGAGCCAATATAAGGGCCAAGTAACAGCACCCATCATACATCATGTGCGCACAC
713 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATGTGCGCACAC
* *
535376 CCCCTGCCCCCTAATTGCCAGAACCCCAATGCTGTCGGCCAGATTCTCCGACGATGCTCCGACGA
778 CCCCTGCCCCCCAATCGCCAGAACCCCAATGCTGTCGGCCAGATTCTCCGACGATGCTCCGACGA
*
535441 TGGTGCCCCAG-GCGAAAAAAAATCTGGC-CCTAGCACATGCTCGAGCCCAG
843 TGGTGCCCCAGAGC-AAAAAAAATCTGGCACC-AGCACATGCCCGAGCCCAG
* * * * * *
535491 CATGTGCCCCCGTAACCCTTGGTCTGATCTGATCTTGCACCGAGAATGAACTTAGTATGCTTAGA
1 CATGTGCACCCGTAACCCTTGGTCTGGTCTGATCTTACACTGGGAATGAACTCAGTATGCTTAGA
* * * ** *
535556 CTGGGAATGAAC-CCAATATGCCGAAGTCAACCCACGAAATGAGCAAGCGGTAACG-T-AGCCGA
66 CTGGGAATGAACTCC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG--GCGCTCAGCCGA
* * * * * *
535618 CCAGAGAGGCAGGATGCGCAAGCTGGGGATCGTCAGGTTCCCCCTACATTCTGTCGATCCTGCTA
128 CCAGAGGGGCAGGATGCGCAAGCTGGGGATCGTCAGGTCCCCCCTGCATGCTGCCGATCCTGCTG
* *
535683 CCCCAACCCTTGATCTGGTCTGATCTTAGACTGGGAAAGAACT-CGTATGCCTAAGCCAACCGAC
193 CCACAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
535747 GAAACGAGCGGGTGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATTGAT
258 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
*
535812 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATTCCAATGCCATTTTTATGGCTT
323 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTT
*
535877 GTAAATTCATACAATGGTCCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
388 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * *
535942 ATTTTTCATGATTTTCAAAATTTTTTACGGTTCAAGATTTTTGTAAAATTTTTTCAGAAGGATTT
453 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTT-TAAAATTTTTTCAGAAGGAGTT
* * *
536007 TTGGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
517 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* *
536072 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAA
582 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
536137 TGGCTACTGGCAGCAAACCTATAAATTCTCAAATGCTCTTTAAAGAGGTGTGAGTTCTCGAGGTT
647 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTT
* *
536202 TGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
711 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATGTGCGCAC
* * ** * ** * * *
536267 ACCCCCTGCCCCCCAATCGTCGGAACCCCAATGC-CACTTGTAAGGTTTTCCGATGATGCTCC-A
776 ACCCCCTGCCCCCCAATCGCCAGAACCCCAATGCTGTC-GGCCAGATTCTCCGACGATGCTCCGA
* * *
536330 GCGATGGTG-CCCTGAGCAAAAAAAA-CTGCGACACCAACACATGCCCGAGCCCAT
840 -CGATGGTGCCCCAGAGCAAAAAAAATCTG-G-CACCAGCACATGCCCGAGCCCAG
** * * * *
536384 CATGTGCACCCACAACGCTCGATCTGGTCTGATCTTACACTGGGAATGAACTCCA-TATGGTTAG
1 CATGTGCACCCGTAACCCTTGGTCTGGTCTGATCTTACACTGGGAATGAACT-CAGTATGCTTAG
* * *
536448 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
65 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACC
* * * *
536513 AGAGGGGCAGGATGCACAAG-TCGAGGATCGATCGGGTCCCTCCCTGC--G-TG-C--TAC--C-
130 AGAGGGGCAGGATGCGCAAGCT-GGGGATCG-TCAGGTCCC-CCCTGCATGCTGCCGATCCTGCT
* **
536568 G--A-AACCCTT-AGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
192 GCCACAACCCTTGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
536629 ATGAAACGAGCGGGCGTGCGGGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCG
256 ACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
536694 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGC
321 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGC
536759 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
386 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* ** *
536824 CTATTTTTCACGATTTTTGGAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGTAG
451 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGA-TTTTTTAAAATTTTTTCAGAAGGAG
* * * *
536889 TTTTGGCCCCAAATTTGGTAGACGTCATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGC
515 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
* * * *
536954 TAGAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAGACACTTT
580 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
537019 AATGGCTACTGGCAGCAAACC
645 AATGGCTACTGGCAGCAAACC
537040 CATCACACAT
Statistics
Matches: 2929, Mismatches: 345, Indels: 124
0.86 0.10 0.04
Matches are distributed among these distances:
882 1 0.00
883 33 0.01
884 393 0.13
885 39 0.01
886 691 0.24
887 64 0.02
889 2 0.00
891 9 0.00
892 477 0.16
893 401 0.14
894 204 0.07
895 235 0.08
896 105 0.04
897 144 0.05
898 131 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (892 bp):
CATGTGCACCCGTAACCCTTGGTCTGGTCTGATCTTACACTGGGAATGAACTCAGTATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCA
GAGGGGCAGGATGCGCAAGCTGGGGATCGTCAGGTCCCCCCTGCATGCTGCCGATCCTGCTGCCA
CAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
CCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATGTGCGCACACCCC
CTGCCCCCCAATCGCCAGAACCCCAATGCTGTCGGCCAGATTCTCCGACGATGCTCCGACGATGG
TGCCCCAGAGCAAAAAAAATCTGGCACCAGCACATGCCCGAGCCCAG
Found at i:537251 original size:26 final size:26
Alignment explanation
Indices: 537213--537291 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
537203 CCGATCCGAT
*
537213 CTTACACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
537239 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
537265 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
537291 C
1 C
537292 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:538160 original size:26 final size:26
Alignment explanation
Indices: 538124--538176 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
538114 CCGGTCTAAT
*
538124 CTTACACTGGGAATGAACTCCTTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
538150 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
538176 C
1 C
538177 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:539022 original size:26 final size:26
Alignment explanation
Indices: 538993--539045 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
538983 CCGGTCTGAT
*
538993 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
* *
539019 CTTAGACTGAGAATGAACTCTGTATG
1 CTTACACTGAGAATGAACTCCGTATG
539045 C
1 C
539046 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCGTATG
Found at i:543902 original size:26 final size:26
Alignment explanation
Indices: 543872--543924 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
543862 GTTGACTTAG
543872 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
543898 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
543924 G
1 G
543925 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:544551 original size:897 final size:896
Alignment explanation
Indices: 541755--556066 Score: 18200
Period size: 897 Copynumber: 16.1 Consensus size: 896
541745 TTGATGCTGG
*
541755 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * * * *
541820 CAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATACGCGGCTTGCCCATCCCAC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * *
541885 CTCTCTGGCCGTCGTAGTGCCCGCCCGCCCGTTCGTTTAATCGGTTGGCTTAGGCATACGGAATT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * ** * * *
541950 CATTCCTAGTCTTAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGTAGCATGCAGGGGG
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGG
* *
542015 GACCCGATCGATCCCTGGCTTGCGCATCCTGCACCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
261 GACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * *
542080 TCATGTGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTAATTCCCAGTG
326 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTG
* * * * *
542145 TAAGATCGGACTGGACCGAGGGCTGTGGGTGCACATGCTGGGCTCAGGCATGTGCTAGTGCCGCA
391 TAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * ** * *
542210 TTTTTTTTCGC-CTGAGCTACCATCGCCTGAGCATCACCGGAGAACCT-AGCTGACGACATTGGG
456 TTTTTTTTCGCTCGGGGC-ACCATCGTCGGAGCATCGTCGGAGAACCTGA-CCGACGGCATTGGG
* * * * * *
542273 GATCCGGCGATTGGGGGGC-GGAGGGTGTGCACACATGGTTTGCGATGGGTGCTGGTACTTGGCC
519 GTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
542337 CTTATATTGGCACCCTATCCGTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
584 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
542402 ATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGT
649 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* ** *
542467 CACAAAATCATGTACACCGCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAG
714 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * *
542532 GATCATGTCTACCAAGTGTGGGGCTAAAACTCCTTCTGAAGGAAGTTTT-AAAAAATCCCGAACC
779 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA-AAAATTTTAAAAAAATCCTGAACC
* *
542596 GTAAAAAGTTTCAAAAAAT-GATGAAAAATAGAAAATGCA-TCATCTTGCCATGAAA
843 GTAAAAAGTTTC-AAAAATCG-TGAAAAATAGAAAACG-AGTCGTCTTGCCATGAAA
542651 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * * **
542716 CAGAAATCTGAACATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTTGC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * * * * * *
542781 CTCTTTGGCTGGCATAATGCCCGCCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * ** * ** *
542846 CATTCCCAGTCTTAGATTGGACCAGACCAAGGGTTGCAGTAGCAGGATCGATAGCACATG-GGGG
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC--GCAGGG
* * * * * * *
542910 GGGACCCGGTCGATCCCCGACTTACGCATCCTGCCCCTCTGGCCTGCTGAGCGCACGTACGCTCA
259 GGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
542975 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AGCATACGAAGTTCATTCCCAG
324 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** * *
543039 TTGTAAGATCAGA-CTGACCGA-GGTTATGGGTGCACATGCT-AGATCGGGCATGTGCTGGTGCC
389 -TGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * *
543101 ACTTTTTTTTTCAC-CCGGG--CCA---T-----CATCGTCGGAGAAGCTGACCGGCGGCATTGG
453 GCATTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
* * *
543155 GGTTCCGGCGATTGGGGGGCAGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGC
518 GGTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * * *
543220 CTTTATATTGGTCCCCTATCCCTCATCAAATCTTGAGAACTCACA-CCCCTCAAAGAGCATTTGA
583 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
**
543284 GATTTTACAATTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
648 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
543349 TCACAAAATCCTGCACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAATAAAAATACAA
713 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
*
543414 GGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTTCTGAAAAAATTTTAAAAAAATCCTGAACC
778 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACC
* *
543478 GAAAAAAGTTTTAAAAATCGTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
843 GTAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
543533 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * * **
543598 CAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATACGTGGCTTGCGCATCCCGC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * * * *
543663 CTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCCATTTTATCGGTTGGCTTAGGCATACAGAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * *
543728 CATT-CCAGTCTAAGATTGGATCAGATCGAGGGTTGTGGCAGCAAGATCAGCAGCACGTAGGGGG
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGG
* * *
543792 G-CCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTTGTT
261 GACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
543856 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTG
326 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTG
*** * * * *
543921 TAAGATCGGATTAGACCGAGCGTTGCGAGTGCACACGCTAGGCTCGGGCATGTGCTGGTGCCGCA
391 TAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * * *
543986 TTTTTTTTCGCTCAGGGCGCCATCGTCGGAGCATCGCCGGAGAATCTAACCGACGGCATTAGGGT
456 TTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
* *
544051 TCC-AGCGATTGAGGGGGCGGGGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACAT
521 TCCGA-CGATTG-GGGGGC----GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
544115 GGCCCTTATATTGGCTCCCAATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATT
580 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* **
544180 TGAGTTTTTACAGGTTTGCTATCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
645 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
544245 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATA
710 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
544309 CAAGGATCATGTCTACCAAGTTTGTGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAAATCCTGA
775 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGA
* *
544374 ACCG-AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGCCTTGCCATGAAA
840 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
544430 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * *
544495 CAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* ** *
544560 CTCTCTGGCTGGTATAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* ** * * * * * * *
544625 AATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTAGCAGCCA-AATCGACAGCATGAAGGCG
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAG-CAGGATCGGCAGCACGCAGG-G
*** * * ***
544689 GGGACCCGATCGATCCCCGGCTTAAACATCCTGCCCCTCAGGCTGGCTGAGCGCCCATGCGCTCG
259 GGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * * *
544754 TTTCATGGGTTGACCTAGGCATACAGAGTTCATTCCCAGTCTAATCATAAGGAGTTCATTTCCAG
324 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
544819 TGTAAGATCGAACCAGACCGAGGGTTGCGAGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCG
389 TGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * * *
544884 CATTTTTTTTTCGCCCGAGGCACCATCGTCAGAGTATCATTGGAGAACCAGACCGGCGGCATTGG
454 CA-TTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
* * * *
544949 GGTTCCGGC-ATTGGGGGGCGAGGGGGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGGC
518 GGTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * * *
545013 CCTTATTTTGGCCCCCTATCCGTCATCAAACCTTGAGAACCCATACCCCCTTAAAGAGCATTTGA
583 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
545078 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC--TTTTCAAATGG
648 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
545141 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAGCAAAAATACAG
713 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
545206 GGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTTAAAAAAT-CTAGAA-
778 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCT-GAAC
* * * *
545269 CGTAAAAAGTTTCCAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAA
842 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
545324 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * *
545389 TAGAAATATGAAGATGTGCCTAGACCCACCTTCCACCCTATCGATCCATGGCTTGCGCATCCCGC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * * *
545454 CTCTCTGGTCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCTGTTGGCTTAGGCATATGGAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* ** * * * * *
545519 CATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCAGTAGCAAGATCGGTAGCATGCTGGGGG
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGC-AGGGG
* * * * * * *
545584 GGA-CCTAGCCGA-CCCCGGCTTGCGTATCTTTCCCCTCTGGCTGGCTGAGCGCTCGCACGCTCG
260 GGACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
545647 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATT--C---C-AAG--T-----G-T-A-----AG
324 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
545692 -AT-AGAT----CCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG
389 TGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
545751 TATCTTTTTTCG-TCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACCGACGGCATTGG
454 CATTTTTTTTCGCT-CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
* * *
545815 GCTTCCGATGATTTGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGG
518 GGTTCCGACGATTGGGGGGC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
545879 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAATAGCATTTG
582 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
545944 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
647 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
546009 GTCAC-AAATCCTGTACACTTCTAGTTTTTAGTTGAATTTTTTTGTGCATGCCAATAAAATTACA
712 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
546073 AGAATCACGTCTACCAAGTTTGGGACCAAAACTCCTCCTGAAAAAATTTTAAAAAAAT-CTCAAA
777 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCT-GAA
* ** *
546137 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATTACTCGTCTTGCCATGAAA
841 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* ***
546193 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCACCA
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* *
546258 TAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACAGCTTGCACATCCCGC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* *
546322 CTCTCTAGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
546387 CATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTAGTAGTAGGATTGGCAGCACGCAGGGGG
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGG
* * * *
546452 GACCC-AGTAGATCCCCGGCTTGCGCATCCTACCTCTCTGGCCGGCTGAGCGCCCGCACGCTCAT
261 GACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
**
546516 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTCATTCCCAGT
325 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * *
546581 GTAAGATCGGACTGGACCGAGGGTTACGGGTGCATAAGATAGGCTCGGGCATGTGCTGGTGTCGC
390 GTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
546646 A-TTTTTTTCGCCCGGGGCACCATCGTTGGAGCTTCGTCGGAGAACCTGACTGACGGCATTGGGG
455 ATTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGG
* *
546710 TTCCGGCGATTAGGGGGGCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCC
520 TTCCGACGATT-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
546775 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTCGTAAAGAGCATTTGAG
584 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
546840 A-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
649 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
546904 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAG
714 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * **
546969 GATCACGTCTGCTAAGTTTGAGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCG
779 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCG
** * *
547034 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCTATGAAA
844 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
547087 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * * *
547152 CAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCAATCCATGGCTTGCGCATCCTGC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * *
547217 CTCTCTGGTCGGTGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * * *
547282 CATTCCCAGTCTAAGATCGAAGCTGACTGAGGGTTATGGCAGCAGGATCAGTAGCACGTAGGGGG
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGG
* ** * * * * * *
547347 GACGCGGCCGATCCCCGGCTTGTGCATCCTGGCCCTCTGGCCGGTTGAGCGCCCACACGTTTGTT
261 GACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * **
547412 TCATGAGTTGACTTAGGCATACGGAGGTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCA
326 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTG
* * * * * * * *
547477 TAAGATCGGACCGGACCAAGGGTTACAGGTGCACATGCTTGGCTTGGGCAAGTGTTGGTGCCACA
391 TAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * ** *
547542 TTTTTTTTTCGC-CTAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACAGCATTGGG
456 -TTTTTTTTCGCTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGG
* * * *
547606 GTTCTGACGATTGGGGGG-GCGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTAGTACTTGGCC
519 GTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * * * *
547670 CTTATGTTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCTCTTTAAAAAGCATTTGAG
584 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
547735 ATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTG--A-----A-A--TTGTTCAAATGGT
649 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * * * *
547790 CACAAAGTCCTATACATTTCGAGTTTTTAGTTGAAATTTTTTGTGCATGCCAACAAAAATATAA-
714 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * *
547854 -A--ACG-------AGTTT-GGGCCAGAACTCCTTCTGAAAAAATTTTTAACAAATCCTGAACCA
779 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCG
* * * *
547908 TAAAAAGTTTTAAAAATCATGAAAAATATAAAATGAGTCGTCTTGCCATGAAA
844 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * *
547961 CTTCACATGAAGGCTTAAGGGACCGTTGTATAAATTTCCAAGACATAAAAATGGCATTGGCATGA
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * *
548026 CAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCATGGCTTGCGCATCCCAC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * ** * * *
548091 CTCTCTAGCAGGCGTAGTG-CCGCTTGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* ** * ** * * *
548155 CATTCCTAGTCTAAGATCAGACCAGACCGAAGGTTACGGTAACAGGATCGGTAGCACGCAGGGGG
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA-GGGG
** * * * * * *
548220 GGATGCGACCGATCCTCGG-TTGGTGCATCCTACCCTTCTGGCCGACTGAGCGCCCGCACGCTCG
260 GGACCCGATCGATCCCCGGCTT-GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *** * * *
548284 TTTCGTGAGTTTTTTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTGCTAG
324 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
548349 TGTAAGATCGGACTGGACCGAGGGTTGCGAGTGCACATGCTGGGCTTGAGCATGTGCTGGTGCCG
389 TGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
548414 CATTTTTTTTTCG-TCCAGGGCACCATCGTCGGAGCATC-ACTGGAGAACCTGATCGATGGCATT
454 CA-TTTTTTTTCGCT-CGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATT
* * * * *
548477 AGCGTTCCGACAATTGGGGGG-GCGGGGGGTGTGCGCACATGATGTGTGATGGGTACTGGTACTT
516 GGGGTTCCGACGATTGGGGGGCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
548541 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATT
580 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
548606 TGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAA
645 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
548671 TGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATA
710 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
548735 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCTG
775 CAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTG
**
548800 AACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
839 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
548858 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* *
548923 TAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * * * *
548988 CTCTCTAGTCGACGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * * *
549053 GATTCCCAATCTAAGATCGGA-CTGAACTGAGGGTTGTGGTAGCAAGATTGGCAACACGCAAGGG
196 CATTCCCAGTCTAAGATTGGACCAG-ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGC-AGGG
* * * * * * * * *
549117 GGCACCCGATCGATCCCTGGATTGCGTATCCTGCCCCTCTTGCTGGCTGAGAGCCCGTACACTCG
259 GGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * ** *
549182 TTTCATAGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAAAATACGGAGTTCATTCCTAG
324 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
549247 TGAAAGATCGAATCAGACCGAGGGTTGCGGGTGCACAGGCTGGGCTCGAGCATGTGCTGGTGCCG
389 TGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * ** **
549312 CACTTTTTTTCGCTTGGGGCACCATCGTCGGAGCATCGCCGGAGAATTTGACCGGTGGCATTGGG
454 CATTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGG
* ** * * * *
549377 GTTCCGACGATTGGGGGGCAGGGGGGTGTTTGCACATGATCTACGATCGGTGCTGGTACATGGCC
519 GTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
549442 CTTATATTGGCCCCCTATCCCTCATCAAACCTC-ATGAACTCACA-CCCCTTAAAGAGCATTTGA
584 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGA
*
549505 GATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
648 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
549570 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
713 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
549635 GGATCATGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAAT-CTCGAAC
778 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCT-GAAC
* *
549699 CGTAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
842 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
549754 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAATGGCATTGGCATGG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* *
549819 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * ** * * *
549884 CTCTTTGGTCGGCGTGGTGCCCGCCCGCTGGCTCATTTCATCGGTGGGCTTAGGCATACGGTGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* ** *
549949 CATTCCCAGTCTAAGA-TGAGACCCA-ATCGAGGGTTGTGGCAGCAGGATTAGCAGCACGTAGGG
196 CATTCCCAGTCTAAGATTG-GA-CCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGG
* * * * * **
550012 GGGACCCGGTCGATCCCCGACTTACGCATCTTGCCCCTTTGGCCGATTGAGCGCCCGCACGCTCG
259 GGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
** * *
550077 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAG
324 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * ** * *
550142 TGTAAGATCGGATCAAACTGAGGGTTGCGGGTGCATGTGTTGGGCTCGGGCATGTGCTGGTGCTG
389 TGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
550207 CATTTTTTTTTGCCCGGGGCACTAGCGTCGGAGCATCGGT-GGAGAACCTGACC-AGCGGCATTA
454 CATTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATC-GTCGGAGAACCTGACCGA-CGGCATTG
* ** * * *
550270 GGGTTCCGACAATTGGGGGGC-GGGGGGTGCACGCACAGGATGTGCAATGGGTGCTGGTACTTGC
517 GGGTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
550334 CCCTTATATTGGCCCCTTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
582 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * * *
550399 AGATTTTATAGGTTTACTGCCAGTGGCCATTGAAGTGTTTGAAATGGGGACACTTTTCTCAAATG
647 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
550464 G-CAACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATAC
712 GTC-ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * * **
550528 AGGGATCATGTCTATCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTCAAAAAATCCCAAA
776 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAA
* *
550593 CCATAAAAAGTTTC-AAAAT--TGTAAAATAG-AAACGA-TC-TCTTGCCATGAAA
841 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
550643 CTTCACATTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATC
1 CTTCACA-TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
550708 GTAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCAAGGCTTGCGCATCCCG
65 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * * *
550773 CCTCTCTGGCCGACGTAGTGCCTGCCCTCCTGTTCGTTTCGTCAGTTGGCTTAGGCATACAGAGT
130 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* ** * *
550838 TCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGGCAGCAAGATCGGTAGCACGCAGGGG
195 TCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGG
* * * *
550903 TGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCTCACACGCTCG
260 -GGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *
550968 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAG
324 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** * ** * *
551033 CATAAGATCGGACTGGACCGAGGGTTATGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCTG
389 TGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * *
551098 CATTTTCTTTTCGCCCGGGGAACCATCGTCGGAGCATCGTCGTAGAACCTGACCGACGGCATTGG
454 CATTTT-TTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
* * *
551163 GGTTTCGACGATT-------GGGGGGGTGTGCACACATGATGTGCGATGGGTACTGGTACTTGGC
518 GGTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
551221 CCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
583 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
551286 GATTTTATAGGTTTGCTGCCAATAGCCATTGAAGCGTAC-GAAATAGGGACACTTTTTTCAAATG
648 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAATG
* * **
551350 GTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGATTTTTTTTGTGCACACCAACAAAAATACA
712 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * * * *
551415 AGGATCATGTCTAGCAGGTTTGGGGCTAAGACTCCTTCTGAAAAAATTTTCAAAAAATCCTAAAC
777 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAAC
*
551480 CGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
842 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * *** **
551535 CTTCACATGATGGCTTGACGGACCATTGTATGAATTTAGAAATGATAAAAATGGCATTGGCACAG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * * *
551600 TAGAAATATGAAGATGTGCCTAAACTCTCCTACCACTCTATCGATCCACAGCTTGCGCATCCCAC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* ** *
551665 CTCTCTGCCCAACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
551730 CATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGTAGTAGCAGGATTGGTAGCATGCAGGGGG
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGG
* * * * * * * *
551795 GACTCGACCGATCCCTGACTTGCGCATCCTGCCTCTCTGGCCGGCTGAACGCCCGCATGCTTGTT
261 GACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
551860 TCATGGGTTGACTTAGGCATACGGAGTACATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTG
326 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTG
* * *
551925 TAAGATCGAACCGGATCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
391 TAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
** * * * *
551990 TTTTTTTTCGCTCGGGGCACCATCCCCTGAGCATCGTTGGAGAACCTGACAGACGACATTGGGGT
456 TTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
* * * * *
552055 TCCGACGATTGGGGGTGTGGGGGGATGTACGCACATGATGTACGAAGGGTGCT-GTGACTTGGCC
521 TCCGACGATTGGGGG-GCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT-ACTTGGCC
* *
552119 CTTATATTAGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAG
584 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
552184 ATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGT
649 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
552249 CACAAAATCTTGTACACTTTGAGTGTTTAGCTGAATTTTTTTGTGCATGTCAACAAAAATACAAG
714 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* *
552314 GATCACGTCTACCAAGTTTGGGGCCCAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCG
779 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCG
* * *
552379 TAAAAAGTTTCAAAAATCATGAAAGATAGAAAATGAGTCGTCTTGCCATGAAA
844 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
552432 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAACTGACATTGGCATGG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* *
552497 TAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGT
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * **
552562 CTCTCTAGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCATTAGTTGGCTTAGGCATACGGAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
** * * *
552627 CATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAAGATCGGCAGCACGTAGGGGG
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGG
* * * * *
552692 GAACCCAATCGATCCCCGACTTACG-AGTCCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCG
261 G-ACCCGATCGATCCCCGGCTTGCGCA-TCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
552756 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTTCATTCCCAG
324 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
552821 TGTAAGATCGGA----A-C-A----TGCGGGTGCACATGTTGGGCTCCGGCATGTGCTGGTGCTG
389 TGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * *
552876 CATTTTTTTTTTGCCCGGGGCACCATCGCCAGATCATCG-CTGGAGAACTTGACCTG-CGGCATT
454 CA-TTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACC-GACGGCATT
** * * *
552939 GGGGTTCTAACGATTGGGGGG-GCGAGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTATTT
516 GGGGTTCCGACGATTGGGGGGCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
553003 GGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
580 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
553068 TGAGATTTTACAGGTTTGCTACCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
645 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
553133 TGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGTATGCCAACAAAAATA
710 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
553198 CAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGCAAAAATTTTTAAAAAAAT-CTC
775 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAAATCCT-
* *
553262 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
838 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
553321 CTTCACATGAAGGCTTAAGGGACCACTGTACGAATTTACAAGCCAT-AAAATGGCATTGGCAAGG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * **
553385 GAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATGCATAGCTTGCGCATCCCGC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * *
553450 CTCTCTGGACGGCGTAATGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * *
553515 CATTCCTAGTCTAAGATTAGATC-GAACTGAGGGTTG-CG-A-CA-G-T--GCA-CA---A-GGG
196 CATTCCCAGTCTAAGATTGGACCAG-ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGG
** * * **
553567 GGACCCGATCGATCCCCGGCTTTTGCATCCTACCCCTCTGGCCGACTGAGCGCCCGTGCGCTCGT
260 GGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * *
553632 TTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCATACAGAGTTCATTCCCAGT
325 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
553697 GTAAGATCAGATCGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGGTGCCG
390 GTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCG
* * * * * *
553762 CATTTTTTTT-GATCAGGGTACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGG
454 CATTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGG
* * * *** *
553826 GTTCGGACGATTGGGGTGTTGGGGGGAGGGTGTGAGCACATGATGTGCGATGGGCATTGGTACCT
519 GTTCCGACGATTGGGG-G--GCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
553891 GGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATT
580 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
553956 TGAGATTTTACCGGTTTGCTGCCAGTA-CCAATTACAGTGTCTAAAATGGGGACACTTTTTTTAA
645 TGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
554020 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAA
709 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAA
*
554085 TACAAGGATCACGTCTACCAAGTTTGGGGCCCAAACTCCTTCTGAAAAAATTTTAAAAAAAT-CT
773 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCT
* * * *
554149 CGAATCGTAAAAAGTTTCAAAAATAGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAA
838 -GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* **
554209 CTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACAG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* ** * ** *
554274 TAAAAATATGAAGACATGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCTTATCCCGT
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* ** * *
554339 CTCTCTAGCCAACGTAGTGCCCGCCCGCCCGTTCGTTTCATTGGTTGGCTTAGGCATACGGAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* *
554404 CATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGT--------GAT----AGCACACAGGGGA
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGG-
* * * * ** * * *
554457 GGACCTGACCGATCCTCGGTTTATGCATCCTGCCCCTCTAGCCGGCTGAGCACCCGCACGCTCAT
260 GGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
554522 TTTATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGT
325 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * *
554587 GTAAGATCAGACCGGACCGAGGGGTACGGGTACACATGCTGGGCTCAGGCATGAGCTGGTGTCGC
390 GTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * * *
554652 ATTTTGTTTTCGCTCAGGGCACCATTGCCGAAGCATCATCGGAGAACCTGACCGATGGCATTGGG
455 ATTTT-TTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGG
* *
554717 GTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCC
519 GTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
** * *
554782 CTTATATTGGCCCCCTATAGCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGTATTTGAG
584 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
554847 ATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTGAAATGGT
649 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
554912 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTCTGCGA-GCCAACAAAAATACAA
714 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAACAAAAATACAA
* * * *
554976 GCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTATGAAAAAATTTTTAAAAAATCTTGAACC
778 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACC
* * *
555041 GTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAG
843 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * **
555095 CTTCACATGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCGTTGGCACAG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * *
555160 TAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCTGC
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * ** **
555225 CTCTCTAGCCGACGTAGTGCCCGCCTGCCCAATCGTTTTGTCGGTTGGCTTAGGCATACGGAGTT
131 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * *
555290 CATTCCTAGTCTAAGATTGGACCAAACTGAGGGTTGTGGCAGCAGGATCGGTAGCACACAGGGGG
196 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGG
* * * * * * * *
555355 GACCCGATCGATCCTCGGCTTGTGCATTCTGTCCCTCTAGTCGGCTGAGCGCCCACACGCTCATT
261 GACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
555420 TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTGTAAG-AT-C--AG---A---CC---G
326 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTG
* * *
555472 --A-AT-------G---GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGTA
391 TAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * ** * * * * *
555524 TTTTATTTTTGC-CTAGGGCACCATCGCCATAGCATCGTCGAAAAACTTGACCGGCGGCATTGTG
456 TTTT-TTTTCGCTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGG
* * * * *
555588 GTTCCGATGATT-GGGGG-GGCGAGGTGTGCACACATGATGTAG-GATGGGTGCTAGTACTTGGC
519 GTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGT-GCGATGGGTGCTGGTACTTGGC
* * * *
555650 CCTTATATTGGCCCCCTATGCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTCGA
583 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
555715 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
648 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
555780 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAA
713 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * * *
555844 GGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTATGAAAAATTTTTTAAAAAATCCCGAACC
778 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACC
* *
555909 GTAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGAGTCGTCTTGCCATGAAA
843 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * **
555963 CTTCACATGAAGGCTTAA-GG---ATTGTTTGAATTTACAAGCCATAAAAATGGGATTGGTGTGG
1 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* *
556024 AAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCG
66 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
556067 TCGGTTGGCT
Statistics
Matches: 11760, Mismatches: 1432, Indels: 480
0.86 0.10 0.04
Matches are distributed among these distances:
864 74 0.01
866 56 0.00
867 198 0.02
868 505 0.04
869 347 0.03
870 8 0.00
871 106 0.01
872 1 0.00
873 94 0.01
874 458 0.04
875 264 0.02
876 7 0.00
877 2 0.00
878 1 0.00
879 106 0.01
880 35 0.00
881 75 0.01
882 279 0.02
883 215 0.02
884 166 0.01
885 92 0.01
886 705 0.06
887 206 0.02
888 776 0.07
889 516 0.04
890 574 0.05
891 466 0.04
892 87 0.01
893 339 0.03
894 842 0.07
895 1022 0.09
896 721 0.06
897 1444 0.12
898 569 0.05
899 175 0.01
900 174 0.01
901 55 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGG
GACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTG
TAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
TCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCGTA
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
Found at i:547940 original size:27 final size:27
Alignment explanation
Indices: 547882--547940 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
547872 CTCCTTCTGA
* * **
547882 AAAAATTTTTAACAAATCCTGAACCAT
1 AAAAAGTTTTAACAAATCATGAAAAAT
547909 AAAAAGTTTTAA-AAATCATGAAAAAT
1 AAAAAGTTTTAACAAATCATGAAAAAT
547935 ATAAAA
1 A-AAAA
547941 TGAGTCGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.58, C:0.10, G:0.05, T:0.27
Consensus pattern (27 bp):
AAAAAGTTTTAACAAATCATGAAAAAT
Found at i:550131 original size:26 final size:26
Alignment explanation
Indices: 550095--550147 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
550085 GTTGACTTAG
550095 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
550121 GCATATGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
550147 G
1 G
550148 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:551905 original size:26 final size:26
Alignment explanation
Indices: 551876--551928 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
551866 GTTGACTTAG
*
551876 GCATACGGAGTACATTCCTAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
* *
551902 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTACATTCCCAGTCTAA
551928 G
1 G
551929 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:552813 original size:26 final size:26
Alignment explanation
Indices: 552774--552826 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
552764 GTTGACTTAG
*
552774 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
552800 GCATACGGACTTCATTCCCAGTGTAA
1 GCATACGGACTTCATTCCCAGTCTAA
552826 G
1 G
552827 ATCGGAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:553679 original size:26 final size:26
Alignment explanation
Indices: 553649--553701 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
553639 GTTGACTTAG
* *
553649 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
553675 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
553701 G
1 G
553702 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:554575 original size:26 final size:26
Alignment explanation
Indices: 554539--554591 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
554529 GTTGACTTAG
554539 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
554565 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
554591 G
1 G
554592 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:562109 original size:26 final size:26
Alignment explanation
Indices: 562073--562125 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
562063 GTTGACTTAG
* *
562073 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
562099 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
562125 G
1 G
562126 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:564134 original size:248 final size:249
Alignment explanation
Indices: 563689--564158 Score: 628
Period size: 248 Copynumber: 1.9 Consensus size: 249
563679 TAGTCATATG
* ** * *
563689 GAGTTCATTCCCAGTCTAAGATCAGATCGAATCAAGGGTTGCGGCAGTAGGATTGACAGCAGACA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGAATCAAGGGTTGCAACAGCAGGATCGACAGCAGA-A
* * * *
563754 AGGGGGGACCGATCGATCCCCGGCTTGTGCATCCTGGCCCTCTGGCTGGCTGGCTGAGCGCCTGC
65 AGGGGGGACCGACCGATCCCCGGCTTGTGCATCCTGGCCCTCT-GCTGGCTGACTGAGCACCCGC
* * *
563819 ACGCTCATTTCATTGGTTGACTTAAGCATATGGAGTTCATTCCCAGTCTAAGCATACGACGTTCA
129 ACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGACATTCA
* * *
563884 TTCCTAGTGTAAGATTGGACCGGACCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
194 TTCCCAGTGCAAGATCGGACCGGACCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
* * *
563940 GAGTTCATTCCCAGTCTAAGATCAGACC-AGATCGAGGGTTGTAATAGCAGGATCGACAGCACG-
1 GAGTTCATTCCCAGTCTAAGATCAGACCGA-ATCAAGGGTTGCAACAGCAGGATCGACAGCA-GA
* *
564003 TAGGAGGGGACCTGACCGATCCCCGGCTTGTGCATCCT-GCCCT-T-TTGGCTGACTGAGCACCC
64 AAGG-GGGGACC-GACCGATCCCCGGCTTGTGCATCCTGGCCCTCTGCTGGCTGACTGAGCACCC
* *
564065 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA-AT
127 GCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GACAT
*
564129 TCATTCCCAGTGCAAGATCGGACTGGACCG
191 TCATTCCCAGTGCAAGATCGGACCGGACCG
564159 AGGGTTACGG
Statistics
Matches: 191, Mismatches: 23, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
248 96 0.50
249 2 0.01
250 5 0.03
251 63 0.33
252 25 0.13
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (249 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGAATCAAGGGTTGCAACAGCAGGATCGACAGCAGAAA
GGGGGGACCGACCGATCCCCGGCTTGTGCATCCTGGCCCTCTGCTGGCTGACTGAGCACCCGCAC
GCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGACATTCATT
CCCAGTGCAAGATCGGACCGGACCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
Found at i:565975 original size:417 final size:418
Alignment explanation
Indices: 565195--566032 Score: 1286
Period size: 417 Copynumber: 2.0 Consensus size: 418
565185 GCACATGATA
** ** **
565195 TGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
1 TGCGATGGGTGCTGGTACTTGGCCCTCATATTCACCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
565260 ACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
66 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAA
** * * *
565325 ATGGGGACACTTTTTTGAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTGGCTGAATTTTTT
131 ATGGGGACACCATTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTT
* *
565390 TGTACATGCAAACAAAAATACAAGGATCACGTCTAATAAGTTTGGGGCCAAAACACCTTCTGAAA
196 TGTACATGCAAACAAAAATACAAGGATCACGTCTAACAAGTATGGGGCCAAAACACCTTCTGAAA
* **
565455 AAATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAAACGTGAAAAATAGAAAATTAGTCGT
261 AAATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAAACATGAAAAATAGAAAACGAGTCGT
*
565520 CTTGCCACGAAACTTCACATGAAGGCTTAAGAGACCATTATATGAATTTACAAGCCTTAAAAATG
326 CTTGCCACGAAACTTCACATGAAGGCTTAAGAGACCATTATATGAATTTACAAGCCATAAAAATG
*
565585 GCATTGGCATGGTAGAAATATGAAGATG
391 GCATTGGCATGGCAGAAATATGAAGATG
565613 TGCG-TGGGTGCTGGTACTTGGCCCTCATATTCACCCCCTATCCCTCATCAAACCTCAAGAACTC
1 TGCGATGGGTGCTGGTACTTGGCCCTCATATTCACCCCCTATCCCTCATCAAACCTCAAGAACTC
*
565677 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAA
66 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAA
565742 ATGGGGACACCATTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTT
131 ATGGGGACACCATTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTT
* * * * **
565807 TGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCAGGTATGGGGTCAAAAGTCCTTCTGAA
196 TGTACATG-CAAACAAAAATACAAGGATCACGTCTAACAAGTATGGGGCCAAAACACCTTCTGAA
*** ** * * *
565871 AAAATTTTAAAAAAATCTGGAA-TCGTAAAAAGTTTTGAAAATCATGAAAATTAGAAAACGAGTT
260 AAAATTTTAAAAAAATCCCAAACT-GTAAAAAGTTTCAAAAAACATGAAAAATAGAAAACGAGTC
* * * *
565935 GTCTTGCCATGAAACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAA
324 GTCTTGCCACGAAACTTCACATGAAGGCTTAAGAGACCATTATATGAATTTACAAGCCATAAAAA
566000 TGGCATTGGCATGGCAGAAATATGAAGATG
389 TGGCATTGGCATGGCAGAAATATGAAGATG
566030 TGC
1 TGC
566033 CCAAACGCAC
Statistics
Matches: 379, Mismatches: 39, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
416 1 0.00
417 370 0.98
418 8 0.02
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (418 bp):
TGCGATGGGTGCTGGTACTTGGCCCTCATATTCACCCCCTATCCCTCATCAAACCTCAAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAA
ATGGGGACACCATTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTT
TGTACATGCAAACAAAAATACAAGGATCACGTCTAACAAGTATGGGGCCAAAACACCTTCTGAAA
AAATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAAACATGAAAAATAGAAAACGAGTCGT
CTTGCCACGAAACTTCACATGAAGGCTTAAGAGACCATTATATGAATTTACAAGCCATAAAAATG
GCATTGGCATGGCAGAAATATGAAGATG
Found at i:567312 original size:11 final size:11
Alignment explanation
Indices: 567296--567328 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
567286 CCCGAGGCAC
567296 CATCGCCGGAG
1 CATCGCCGGAG
567307 CATCGCCGGAG
1 CATCGCCGGAG
*
567318 CATCGTCGGAG
1 CATCGCCGGAG
567329 AACCTGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.36, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:567546 original size:888 final size:886
Alignment explanation
Indices: 565609--567962 Score: 3301
Period size: 888 Copynumber: 2.6 Consensus size: 886
565599 GAAATATGAA
* ** *
565609 GATGTGCG-TGGGTGCTGGTACTTGGCCCTCATATTCACCCCCTATCCCTCATCAAACCTCAAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
565673 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
**
565738 TGAAATGGGGACACCATTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* * * * *
565803 GTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAGGTATGGGGTCAAAAGTCCTTCT
196 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT
** * * *
565868 GAAAAAATTTTAAAAAAATCTGGAATCGTAAAAAGTTTTGAAAATCATGAAAATTAGAAAACGAG
261 GAAAAAATTTT-AAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
* *
565933 TTGTCTTGCCATGAAACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
565998 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCCAAACGCACCTAGCACCCTATCGATCCAC
390 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCAC
* * * *
566063 AGCTTGCGCAACTCAGTCTCTCTGGCCGACGTAGTGCCCG--C-CCGCTCGTTTCGTCGGTTGGC
455 GGCTTGCGCATC-CTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCTCGTTTCGTCGGTTGGC
* * *
566125 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAATCGAGGGTTGCAGTAGCAAGATC
519 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACT-GAGGGTTGCAGTAGCAAGATC
* * * *
566190 AGCAGCACACAGGGGGGACCTAGCTGATACCCGGCTTGCACATCTTGCACCTCTGGCCGACTGAG
583 AGCAGCACACAGAGGGGACCTAGCTGATACCCGACTTGCACATCCTGCACCTCTAGCCGACTGAG
* * * * *
566255 CGCCCGCACATTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACG
648 CCCCCGCACACTCATTTCACGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACG
* * * * *
566320 GAGTTCATTCCCAGTGTAAGATCGGCCTGGACCAAGGGTTGTGGGTGCACATACTGGGCTCGGGC
713 GAGTTCATTCCCAGTGTAAGATCAGACAGGACCAAGGGTTGCGGGTACACATACTGGGCTCGGGC
* ** * *
566385 TTGTGCTGGTGCCACATTTTTTTCACCCAGGGCACCATCGCCGAAGTATCGCCAGAGAACCTGAC
778 TTGTACCCGAGCCACA-----TTCACCCA-GGCACCATCGCCGAAGCATCGCCAGAGAACCTGAC
* * * * *
566450 CGACGGCGTTGGGGTTCCGACGATTGGGGGGCCGGAGGGTGTGCGCACGT
837 CGACGGCATTGGGGTACCGACGATGGGGGGGCAGGAGGGTGTGCGCACAT
*
566500 GATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
566565 ACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCTAGTAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
566630 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTTTTTAGTTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
566695 TTTTTGTGTATGCCAACAAAAATACAAGGATCATGTCTACCAACTTTGGGGCCAAAAATCCTTCT
196 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT
*
566760 GAAAAAATTTTAAAAATATCCCGAACCAT-AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
261 GAAAAAATTTTAAAAA-ATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
566824 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
** * * * *
566889 AATGGCATTGTTATAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCAC
390 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCAC
* * * *
566954 GGCTTACGCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCGCTCATTTCGTCGATTGGC
455 GGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGC
* * *
567019 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTGCAGTAGCAGGATC
519 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGCAGTAGCAAGATC
** * * ** *
567084 -GACAGCATGCAGAGGGGACC-AGGTCGATCCCCGACTTGCGTATCCTGCCCCTCTAGCCGACTG
583 AG-CAGCACACAGAGGGGACCTAGCT-GATACCCGACTTGCACATCCTGCACCTCTAGCCGACTG
* * *
567147 AGCCCCCGCACGCTCATTTCGCGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
646 AGCCCCCGCACACTCATTTCACGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATA
* **
567212 CGGAGTTCATTCCC-GATGTAAGATCAGACAGGACCGAGGGTTGCGGGTACACATGTTGGGCTCA
711 CGGAGTTCATTCCCAG-TGTAAGATCAGACAGGACCAAGGGTTGCGGGTACACATACTGGGCTC-
**** * * * * * * *
567276 TTTTTTTTCACCCGAGGCACCA-TC-GCC-GG-AGCATCGCCGGAGCATCGTCGGAGAACCTGAC
774 GGGCTTGT-ACCCGAGCCA-CATTCACCCAGGCACCATCGCCGAAGCATCGCCAGAGAACCTGAC
* * * *
567337 CGACGGCATTGGGGTACTGGCGATCGGGGGGGCAGGGGGGTGTGCGCTCAT
837 CGACGGCATTGGGGTACCGACGAT-GGGGGGGCAGGAGGGTGTGCGCACAT
*
567388 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
567453 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
567518 TGAAATGGGGACACTTTTTTCGAATGGTCCCAAAATCCTGTACACTTAGAGTTTTTAGCTAAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* *
567583 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCT
196 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT
** ** *
567648 GAAAAGTTTTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAG
261 GAAAA-AATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
567713 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
567778 AATGGCATTGGCATGGCAGAAATATGAAGATGGGCCTAAACCCACCTAGCACCCTATCGATCCAC
390 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCAC
* * *
567843 GACTTGCGCATCCTGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
455 GGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGC
* * * *
567908 TTAGGCATACGAAGTTCATTCCCAGTTTGAGATCGGACCAGACTGAGGGTTGCAG
519 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGCAG
567963 GTGCACATAC
Statistics
Matches: 1297, Mismatches: 150, Indels: 34
0.88 0.10 0.02
Matches are distributed among these distances:
887 47 0.04
888 282 0.22
889 269 0.21
890 26 0.02
891 176 0.14
892 249 0.19
893 5 0.00
894 231 0.18
895 5 0.00
896 5 0.00
897 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (886 bp):
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT
GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACG
GCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACTGAGGGTTGCAGTAGCAAGATCAGC
AGCACACAGAGGGGACCTAGCTGATACCCGACTTGCACATCCTGCACCTCTAGCCGACTGAGCCC
CCGCACACTCATTTCACGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACGGAG
TTCATTCCCAGTGTAAGATCAGACAGGACCAAGGGTTGCGGGTACACATACTGGGCTCGGGCTTG
TACCCGAGCCACATTCACCCAGGCACCATCGCCGAAGCATCGCCAGAGAACCTGACCGACGGCAT
TGGGGTACCGACGATGGGGGGGCAGGAGGGTGTGCGCACAT
Found at i:569648 original size:894 final size:888
Alignment explanation
Indices: 567912--570447 Score: 3529
Period size: 894 Copynumber: 2.8 Consensus size: 888
567902 GTTGGCTTAG
* * * *
567912 GCATAC-GAAGTTCATTCCCAGTTTGAGATCGGACCAGACTGAGGGTTGCAGGTGCACATACTGG
1 GCATACAG-AGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCAGGTGCACATGCTGG
** * **
567976 GCTTGGGCATGTGCTGGTGCCGTATTTTTTTTCGCTTGGGGCACCATCACCGGAGCATCGCCAGA
65 GCTCAGGCATGTGCTGGTGCCGCA-TTTTTTTCGC-CCGGGCACCA-C-CCGGAGCATCGCCAGA
* * *
568041 AAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGGCGAGGGGGGTGTGCGCACGTGATG
126 GAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGC--GGGGGGTGTGCGCACATGATG
568106 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
188 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
568171 ACACCCCTTTGAAGAGCATTTGAGATTTT-CAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAA
253 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
* * * *
568235 ATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTTT
318 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * ** * * *
568300 TGTGCGTACCAA-AAAAATACAAGGATCATGTCTACCTCGTTTAGGGCCAAAATTCCTTTTGAAA
383 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * * * * *
568364 AAATTTTAGAAAATCCCGAACCTTTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAATCGTC
448 AATTTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTC
* * *
568429 CTGCCGTGAAACTTCACATGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGG
513 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
568494 CATTGGCATGGCAAAAATATGAAGATGTGACT-AACCCACCTACCACCCTATCGATCCACGACTT
578 CATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
568558 GCGTATCCCGTCTCTCTGGCCGGCATAGTGCCCGTCGACCCACTCATTTTGTCGGTTGGCTTAAG
643 GCGCATCCCGCCTCTCTGGCC-GCGTAGTGCCTGCCG-CCCACTCGTTTCGTCGGTTGGCTTAGG
* * * * *** * *
568623 CATACGGAGTTTATTCCTAGTCTAAGATCAGATCGGATTGAAGGTTGTGGCAGCAGGATCGGTAG
706 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTCCAGCAGCAGGATCAGCAG
* * ** * * * *
568688 TACATAGGGGGGACCCGGCCGATCCCCAGCTTGCTCATCCTACCCCTCTGGCTGGCTGAGCGCCT
771 CACACAGGGGGGACCCAACCGATCCCCAGATTACTCATCCTACCCCTCTGGCTGGCTCAACGCCT
* * * *
568753 GCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
836 GCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
** * *
568806 GCATATGGAGTTCATTCTCAGTGTAAGATCGGACCAGACCGAGGGTTGCCGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCAGGTGCACATGCTGGG
* * * *
568871 CTCAGGCATGTGCTGGTACCACATTTTTTTCGCCCAGGGCACCACCCCGGAGCATCGTCGGAGAA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTTTCGCCC-GGGCACCA-CCCGGAGCATCGCCAGAGAA
*
568936 CCTGACCGGCGGCATTGGGGTTCC-AGCGATTGGGGGGC-GGGGGTGTGCGCACATGATGTGCGA
129 CCTGACCGACGGCATTGGGGTTCCGA-CGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
*
568999 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
569064 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
569129 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
569194 ATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAGTT
388 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA-TT
* * *** *
569259 TTTAAAAAAATCCCGAACCGTGAAAAGTTTCAAAAATAAAAAAAAAATAAAAAACGAGTCGTCTT
452 TTT-AAAAAATCCCGAACCATAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTT
* *
569324 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATAGCA
515 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** * * * *
569389 GTGGCATGGCAGCAATATGAAGATATGCCTAAACCCACCTACCACACTATCGATACATGGCTTGC
580 TTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
569454 GCAGCCCACCTCTCTGGCCGCCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
645 GCATCCCGCCTCTCTGGCCG-CGTAGTGCCTG-CCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
* *
569519 TATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTCCAGTAGCAGGATCAGCAGCA
708 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTCCAGCAGCAGGATCAGCAGCA
* * * * *
569584 CGCAGGGGGGACCCAATCGATCCCCGGATTACGT-ATCCTACCCTTCTGGCTGGTTCAACGCCTG
773 CACAGGGGGGACCCAACCGATCCCCAGATTAC-TCATCCTACCCCTCTGGCTGGCTCAACGCCTG
*
569648 CACGCTCGTTTCATAGGTTGACTTAGGCATATGGAATTCATTCCCAGTCTAA
837 CACGCTCGTTTCATAGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
* * * * **
569700 GCATACAGAGTTCGTTCCCAGGGTAAGATCGGACCAGACCAAGGGATGTGGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCAGGTGCACATGCTGGG
* *
569765 CTCATGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGG--GCA--C----CATCGCCAGAGAACC
66 CTCAGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGCACCACCCGGAGCATCGCCAGAGAACC
* * *
569822 TGACCGACGACATTGGGGTTCCGACGATTGGGCGGGCGGGGGGGTGTGCACACATGATGTGCAAT
131 TGACCGACGGCATTGGGGTTCCGACGATTGGG-GGGC-GGGGGGTGTGCGCACATGATGTGCGAT
569887 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
569952 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
570017 ACACTTTTTTCAAATGG-CACCCAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
324 ACACTTTTTTCAAATGGTCA--CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
570081 CATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAAAATT
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAATT
* *
570146 TTTAAAAAATCCAGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
452 TTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGC
*
570211 CATGAAACTTCAGATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
517 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
570276 GGAATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
582 GGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
570341 ATCCTGCCTCTCTGGTCTGCGTAGTGCCCTTCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATA
647 ATCCCGCCTCTCTGG-CCGCGTAGTG-CCTGCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATA
* * * **
570406 CGGAGTTCACTCCCAGTCTAACATCAAATCAAACTGAGGGTT
710 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTT
570448 GTGGTTGTAG
Statistics
Matches: 1458, Mismatches: 164, Indels: 49
0.87 0.10 0.03
Matches are distributed among these distances:
884 41 0.03
885 235 0.16
886 37 0.03
887 173 0.12
888 213 0.15
889 102 0.07
890 47 0.03
891 14 0.01
892 73 0.05
893 128 0.09
894 391 0.27
895 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GCATACAGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCAGGTGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGCACCACCCGGAGCATCGCCAGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAATTTTTA
AAAAATCCCGAACCATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGCCTCTCTGGCCGCGTAGTGCCTGCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTCCAGCAGCAGGATCAGCAGCACACAGGGG
GGACCCAACCGATCCCCAGATTACTCATCCTACCCCTCTGGCTGGCTCAACGCCTGCACGCTCGT
TTCATAGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
Found at i:570670 original size:26 final size:26
Alignment explanation
Indices: 570618--570670 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
570608 GTTGACTTAG
* *
570618 GCATACCAAATTCCTTCCCAGTCTAA
1 GCATACCAAATTCATTCCCAATCTAA
* * *
570644 GCATACGAAGTTCATTCCCAATGTAA
1 GCATACCAAATTCATTCCCAATCTAA
570670 G
1 G
570671 ATTGGACCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACCAAATTCATTCCCAATCTAA
Found at i:572176 original size:26 final size:26
Alignment explanation
Indices: 572140--572192 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
572130 GTTGACTTAG
572140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
572166 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
572192 G
1 G
572193 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:572781 original size:886 final size:893
Alignment explanation
Indices: 571007--574823 Score: 5596
Period size: 886 Copynumber: 4.3 Consensus size: 893
570997 AAAATCCTGT
* * * * *
571007 ACCCT-TCAATCCACGGCTTGTGCATGCCGCCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTC
1 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC
* *
571071 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAAACC-AGGGG
66 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGA-GGG
* ** * * * *
571135 TTACGATAGCAGGATCGGCAGCACGTAGGTGGGGACCCGACCGATCCTCGGCTTGTCCATCCTGC
130 TTGCGGCAGCAGGATC-GTAGCACGTAGG-GGGGACCCGATCGATCC-CCGCTTGCCCATCCTGC
* * * * *
571200 CCCTCTAGCCGACTGAGAGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGAAT
192 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * * * **
571265 CCTAGTCTAACCAAACGGAGTTCATTCCCAGTGTAAGATCGGATCGAACCAAGGGTTACGGGTGC
257 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGATCTAGGGTTGTGGGTGC
* * * * * *
571330 ACATGCTGGGCTC-AGCATGTG-TCGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCTGGAG
322 AAATACTGGGCTCGGGCATGTGCT-GGTGCCACATTTTTTTTCGCCCGGGGCACCATCACCGGAG
* ** * * * * *
571393 CGTCGCCAAAGAACCTGACCAGCGACATTGGGGTTCCGGCGATTGGGGGGTC-GGGGGTGTGCGC
386 CATCGCCGGAGAACCTGATCAGCGGCATTAGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGC
571457 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
451 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
571522 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
516 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
*
571587 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
581 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
571652 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAAATCC
646 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
* ** * *
571716 TTCTGAAAGAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTAAAAATCATTAAAAATAGAAAAC
711 TTCTGAAAAAATTTTAAAAAATCTCCAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * *
571781 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTGAA-GGACCACTATATGATTTTACAAGCCA
776 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCA
** * *
571845 TAAAAATGGCATTGGCACAGCAAAAATATGAAGATGTTCCTAAACCCACCTACC
840 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
571899 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTGACGTAGTGCCCG-CCGCCCGCTC
1 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC
* * * * * *
571963 GTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTGTAAGATCGGATCAGATCGAGGGT
66 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGT
* **
572028 TGCGGCAGCAGGATCGATAGCACGTAGGGGGGGACCCAATCGATCCCCAGCTTGGGCATCCTGCC
131 TGCGGCAGCAGGATCG-TAGCACGTA-GGGGGGACCCGATCGATCCCC-GCTTGCCCATCCTGCC
* ** ** *
572093 CCTTTGGCCGGTTGAGCGCCAACACGCTCATTTC-TGGGTTGACTTAGGCATACGGAGTTCATTC
193 CCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* *
572157 CCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGATCGAGGGTTGTGGGTGCA
258 CCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGATCTAGGGTTGTGGGTGCA
* * *** *
572222 CATGCTGGGCTCGGGCATGTGCTGGTGCTGTA-TTTTTTTCGCCCGGGGCACCATCGCC-GAGCA
323 AATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCACCGGAGCA
* * * * *
572285 TCACTGGAGAACCTGATCAGCGGCATTGGGGTTCCGACGATT-GGGGGGCGGGAGGTGTACGCAC
388 TCGCCGGAGAACCTGATCAGCGGCATTAGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCAC
572349 ATGATGTGC-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-A
453 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
572412 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
518 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG
572477 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
583 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
*
572542 -TTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
648 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
*
572605 -TGAAAAAATTTTAAAAAAATC-CCAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
713 CTGAAAAAATTTT-AAAAAATCTCCAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
572668 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
777 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
572733 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
842 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
572785 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGC-TAGTGCCCGCCCGCCCGCTC
1 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC
* *
572849 GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAAATTGGACCAGACCGAGGGT
66 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGT
* *
572914 TGCGGCAGC---AT-GT---A-GT--GGGGGACCCGGTCGATCCCCGACTTGCCCATCTTGCCCC
131 TGCGGCAGCAGGATCGTAGCACGTAGGGGGGACCCGATCGATCCCCG-CTTGCCCATCCTGCCCC
* *
572969 TCTGGCCGACTGAGCGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGG-GTTCATTCC
195 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCC
*
573033 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGATCTTAGGGTTGTGGGTGCA
259 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGATC-TAGGGTTGTGGGTGCA
* * *
573098 AATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCTCGGTGCACCATCACCGGATCA
323 AATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCACCGGAGCA
* *
573163 TCGCCGGAGAACCTGATCGGCGGCATTAGGGTTCCGATGATTGGGGGGGCGGGGGGTGTGCGCAC
388 TCGCCGGAGAACCTGATCAGCGGCATTAGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCAC
573228 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
453 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
573293 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG
518 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG
* *
573358 TCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
583 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
* * *
573423 TTTTTTTGTGCATGCCAACAAAAATACAGGGATCACATCTACAAAGTTTGGGGCCAAAAATCCTT
648 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
* ** * *
573488 CTGAAAGAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTAAAAATCATTAAAAATAGAAAACGA
713 CTGAAAAAATTTTAAAAAATCTCCAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
573553 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
778 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
573618 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCCAAACCCACCAAAC
843 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
573669 ACCCTATCAATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGCTTAGTGCCCGCCCGCCCGCTC
1 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC
* * *
573734 GTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAAATTGGACCAGACCGAGGGT
66 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGT
* *
573799 TGCGGCAGC---AT-GT---A-GT--GGGGGACCCGGTCGATCCCCGACTTGCCCATCTTGCCCC
131 TGCGGCAGCAGGATCGTAGCACGTAGGGGGGACCCGATCGATCCCCG-CTTGCCCATCCTGCCCC
* *
573854 TCTGGCCGACTGAGCGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGG-GTTCATTCC
195 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCC
*
573918 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGATCTAGGGTTGTGGGTGCAA
259 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGATCTAGGGTTGTGGGTGCAA
* * *
573983 ATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCTCGGTGCACCATCACCGGATCAT
324 ATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCACCGGAGCAT
* *
574048 CGCCGGAGAACCTGATCGGCGGCATTAGGGTTCCGATGATTGGGGGGGCGGGGGGTGTGCGCACA
389 CGCCGGAGAACCTGATCAGCGGCATTAGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACA
*
574113 TGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
454 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
574178 AACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
519 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT
** * * *
574243 CCAAAAATGGGGACACTGTTTTCAAATAGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAA
584 -CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
* * *
574308 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCCAAGACA-CCT
648 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA-AAATCCT
* *
574372 TCTGAAAAAATTTTAAAAAAATC-CCAAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAA
712 TCTGAAAAAATTTT-AAAAAATCTCC-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
574436 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
775 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
574501 AAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
840 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * * *
574555 ACCCTATCGATCCACTGATTGCGTATCCCGTCTCTTTGGCCGGTGTAGTGCTCGCCCGCTCGCTC
1 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC
* * ** * *
574620 GTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGT
66 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGT
* * * * ***
574685 TGTGGCAGTAGGATCGGCAGCACGCAGGGGGGACCCGATCGATCCCCAGCTTATGCATCCTGCCC
131 TGCGGCAGCAGGATC-GTAGCACGTAGGGGGGACCCGATCGATCCCC-GCTTGCCCATCCTGCCC
* * * * *
574750 CTCTAGCCGGCTAAGCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
194 CTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
*
574815 CAGTGTAAG
259 CAGTCTAAG
574824 ATCAGACCGG
Statistics
Matches: 2680, Mismatches: 202, Indels: 81
0.90 0.07 0.03
Matches are distributed among these distances:
873 1 0.00
874 56 0.02
875 74 0.03
876 44 0.02
877 25 0.01
878 42 0.02
879 29 0.01
880 53 0.02
881 129 0.05
882 7 0.00
883 63 0.02
884 478 0.18
885 387 0.14
886 580 0.22
887 36 0.01
888 129 0.05
889 61 0.02
890 60 0.02
891 123 0.05
892 158 0.06
893 46 0.02
894 1 0.00
895 1 0.00
896 2 0.00
897 94 0.04
898 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (893 bp):
ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGT
TGCGGCAGCAGGATCGTAGCACGTAGGGGGGACCCGATCGATCCCCGCTTGCCCATCCTGCCCCT
CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGATCTAGGGTTGTGGGTGCAAAT
ACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCACCGGAGCATCG
CCGGAGAACCTGATCAGCGGCATTAGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTG
AAAAAATTTTAAAAAATCTCCAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
Found at i:573053 original size:26 final size:26
Alignment explanation
Indices: 573015--573067 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
573005 GTTGACTTAG
573015 GCATACAGGGTTCATTCCCAGTCTAA
1 GCATACAGGGTTCATTCCCAGTCTAA
*
573041 GCATAC-GGAGTTCATTCCCAGTGTAA
1 GCATACAGG-GTTCATTCCCAGTCTAA
573067 G
1 G
573068 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGGGTTCATTCCCAGTCTAA
Found at i:573938 original size:26 final size:26
Alignment explanation
Indices: 573900--573952 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
573890 GTTGACTTAG
573900 GCATACAGGGTTCATTCCCAGTCTAA
1 GCATACAGGGTTCATTCCCAGTCTAA
*
573926 GCATAC-GGAGTTCATTCCCAGTGTAA
1 GCATACAGG-GTTCATTCCCAGTCTAA
573952 G
1 G
573953 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGGGTTCATTCCCAGTCTAA
Found at i:575061 original size:15 final size:15
Alignment explanation
Indices: 575043--575083 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
575033 ATATTATACA
575043 AAATACAAAAAAAAT
1 AAATACAAAAAAAAT
*
575058 AAATAC-CAAAAAAT
1 AAATACAAAAAAAAT
575072 -AATACAAAAAAA
1 AAATACAAAAAAA
575084 TAGCAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 5 0.22
14 12 0.52
15 6 0.26
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (15 bp):
AAATACAAAAAAAAT
Found at i:575070 original size:14 final size:14
Alignment explanation
Indices: 575043--575085 Score: 61
Period size: 13 Copynumber: 3.1 Consensus size: 14
575033 ATATTATACA
575043 AAATACAAAAAAAAT
1 AAATAC-AAAAAAAT
*
575058 AAATACCAAAAAAT
1 AAATACAAAAAAAT
575072 -AATACAAAAAAAT
1 AAATACAAAAAAAT
575085 A
1 A
575086 GCAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 12 0.48
14 7 0.28
15 6 0.24
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:575075 original size:13 final size:13
Alignment explanation
Indices: 575044--575105 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 13
575034 TATTATACAA
575044 AATACAAAAAAAAT
1 AATAC-AAAAAAAT
*
575058 AAATACCAAAAAAT
1 -AATACAAAAAAAT
575072 AATACAAAAAAAT
1 AATACAAAAAAAT
*
575085 -A-GCAAAAAAA-
1 AATACAAAAAAAT
575095 AATA-AAAAAAA
1 AATACAAAAAAA
575106 AGAAAAATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 16 0.39
12 1 0.02
13 12 0.29
14 7 0.17
15 5 0.12
ACGTcount: A:0.79, C:0.08, G:0.02, T:0.11
Consensus pattern (13 bp):
AATACAAAAAAAT
Found at i:575084 original size:23 final size:23
Alignment explanation
Indices: 575051--575106 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
575041 CAAAATACAA
*
575051 AAAAAATAAATACCAAAAAATAAT
1 AAAAAA-AAATACCAAAAAAAAAT
* *
575075 ACAAAAAAATAGCAAAAAAAAAT
1 AAAAAAAAATACCAAAAAAAAAT
575098 AAAAAAAAA
1 AAAAAAAAA
575107 GAAAAATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 23 0.82
24 5 0.18
ACGTcount: A:0.80, C:0.07, G:0.02, T:0.11
Consensus pattern (23 bp):
AAAAAAAAATACCAAAAAAAAAT
Found at i:575106 original size:13 final size:13
Alignment explanation
Indices: 575049--575106 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
575039 TACAAAATAC
575049 AAAAAAAATAAATA
1 AAAAAAAATAAA-A
** *
575063 CCAAAAAATAATA
1 AAAAAAAATAAAA
* **
575076 CAAAAAAATAGCA
1 AAAAAAAATAAAA
575089 AAAAAAAATAAAA
1 AAAAAAAATAAAA
575102 AAAAA
1 AAAAA
575107 GAAAAATAAT
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
13 26 0.74
14 9 0.26
ACGTcount: A:0.81, C:0.07, G:0.02, T:0.10
Consensus pattern (13 bp):
AAAAAAAATAAAA
Found at i:576033 original size:18 final size:18
Alignment explanation
Indices: 575992--576033 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
575982 GGTAAAAAAA
*
575992 ATTTTTTTTTAATTTTCT
1 ATTTTTTTTTAATTATCT
*
576010 AATTTTTTTTATATTAT-T
1 ATTTTTTTTTA-ATTATCT
576028 ATTTTT
1 ATTTTT
576034 GTTATTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (18 bp):
ATTTTTTTTTAATTATCT
Found at i:576460 original size:17 final size:17
Alignment explanation
Indices: 576440--576506 Score: 66
Period size: 17 Copynumber: 4.0 Consensus size: 17
576430 CTAAGTTTTT
576440 AAAACCCCTAAAAATCC
1 AAAACCCCTAAAAATCC
*
576457 AAAATCCCCT-AAAATTC
1 AAAA-CCCCTAAAAATCC
* *
576474 AAAACCTCTTAAAATCC
1 AAAACCCCTAAAAATCC
**
576491 -AAAGTCCTAAAAATCC
1 AAAACCCCTAAAAATCC
576507 TAAAGACAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
16 16 0.39
17 20 0.49
18 5 0.12
ACGTcount: A:0.49, C:0.30, G:0.01, T:0.19
Consensus pattern (17 bp):
AAAACCCCTAAAAATCC
Found at i:582782 original size:22 final size:22
Alignment explanation
Indices: 582754--582795 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
582744 CCATCCGCTG
582754 GCGCATGGCCTCCATGCCATTT
1 GCGCATGGCCTCCATGCCATTT
582776 GCGCATGGCCTCCATGCCAT
1 GCGCATGGCCTCCATGCCAT
582796 CTCGCAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.14, C:0.38, G:0.24, T:0.24
Consensus pattern (22 bp):
GCGCATGGCCTCCATGCCATTT
Found at i:588070 original size:26 final size:26
Alignment explanation
Indices: 588034--588086 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
588024 GTTGACTTAG
588034 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
588060 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
588086 G
1 G
588087 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:589995 original size:26 final size:26
Alignment explanation
Indices: 589966--590018 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
589956 GTTGACTTAG
* *
589966 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
* *
589992 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGACTTCATTCCCAGTCTAA
590018 G
1 G
590019 ATTAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:592489 original size:26 final size:26
Alignment explanation
Indices: 592452--592504 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
592442 GTTGACTTAG
592452 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
592478 GCATAC-AGAGTTCATTCCCAGTGTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
592504 G
1 G
592505 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:594019 original size:894 final size:894
Alignment explanation
Indices: 590685--598226 Score: 9574
Period size: 894 Copynumber: 8.5 Consensus size: 894
590675 GTTGACTTAG
* * * * *
590685 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACC-GGAGCGGGGGTTGTGAGTGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGG-CCGAGGGTTGCGGGTGCACATGCTGG
** ** ** * *
590749 GCTTAGGCATGTGCCAGTGCCATTTTTTTTTTCACTCGGGGCACCATCGTCGGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * *
590814 GAACCTGACCGACGGCATTGGGGTTCTGGCGATTGGGGGGTGGGGGGTGGTGTACGCACATGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGT-GTG--CGCACATGATG
*
590879 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
590944 ACACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
591009 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTCTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
591074 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCCTTCT-AAA
387 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
591138 AACTTTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTG
451 AA-ATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
591203 TCTTGCCATGAAACTTCACATGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
591268 GGCTTTGGCATGTCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
580 GGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
591333 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
645 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
591398 GGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGATTGAGGGTTGTGACAGTAGCATCGGC
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGATCGGC
* * * *
591463 AGCACG-AGGGGGGGACCCGACCGATCCCTGGCTTGTGCATCCTGCCCTTCTGGCCGACTGTGCA
775 AGCACGTA-GGGGGGACCCGACCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * * ** **
591527 CCTGCACGCTCGTTCCGTGGGTTGACTTAGTCATATGGAGTTCATTCTTAGTCTAA
839 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
591583 GCAAATGGAGTTCATTCCCAGTAT-AGAATCGGGCCAGACCGAGGGTTGCGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTGTAAG-ATCGGACCAGGCCGAGGGTTGCGGGTGCACATGCTGG
* ** * * * *
591647 GTTCGACCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACGATCGTCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * * *
591712 GAACCTGACTGACGGCATTGGGGTTTCGGC-ATTGGGGGGCGGGGGGGTGTGCGCTCGTGATGTG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGC-GGGGGGTGTGCGCACATGATGTG
* * *
591776 TGATGGGTACTGGTACTTGGCCCTTATCTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
591841 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTTAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
591906 GGGGACACCTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTGGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
591971 TGTATGACAGAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
389 TGCATGCCA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
592036 ATTTTAAAAAAATCCCAAACCATACAAAGTTTTAAAAATCATGAAAAATAAAAAAACGAGTCGTC
453 ATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTC
*
592101 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
592166 CATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCTACCTACCA-CCTATCGATCCACGGCTT
582 CATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* **
592230 GCGCATCCTGCCTCTCTGGCCGACGTAAAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
647 GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** * ** * * *
592295 CATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACAGTGGGTTGCAGCCGCAAGATTGGCAG
712 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGATCGGCAG
** * * * * * ** * * * *
592360 CACACAAGGGAGACTCGACCTATCCCTGACTTACGCATCTTGCCCCTCTGGTCGACTGAGCACCC
777 CACGTAGGGGGGACCCGACCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* *
592425 GCACACTCATTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAA
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* * * *
592478 GCATACAGAGTTCATTCCCAGTGTAAGATCAGATCAGAG-CGAGGGTTACGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAG-GCCGAGGGTTGCGGGTGCACATGCTGG
* * * *
592542 GCTCGAGCATGTGCTGGTGCCACATTTTTTTTCTCTCGGGGCACCATCG-CTTGAGCATCGCCGG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTC-GGAGCATCGCCGG
* * * * *
592606 AGAACTTGACTGACGGCATTGGGGTTCCGACGA-TAGGGGGC-GGGGG-GTGCACACATGATGTG
129 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTG
* * *
592668 CGATGGGTGCTGGTACTTGGCCTTTATAATGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
592733 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
592798 GGGGACACTTTTTTCGAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
592863 TGCATGCCAACAAAAATACAAGGATCACATCTATCAAGTTTGGGGCCAAAACTCCTTTTCAAAAA
389 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
*
592928 ATTTT-AAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
453 ATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
592992 TGCCATGCAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
593057 ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 ATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * **
593122 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTCGTTTTGTCCATTGGCTTAGGC
648 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* *** * *
593187 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGTGGCAGTAGGATCAGCAGC
713 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGATCGGCAGC
* * * * * *
593252 ACGTAGGGGTGACCCGGCTGATCCCTAGCTTGTGCATCCTACCCCTCTAGCCGGCTGAGCGCCCG
778 ACGTAGGGGGGACCCGACCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
593317 CACCCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAT
843 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * ** * ** *
593369 GGATACAGAGTTCATTCCCAGTGTAAGATCATACCAGGCTGAGGGTTATGGGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGGCCGAGGGTTGCGGGTGCACATGCTGGG
* * * ** * **
593434 CTTGGGCATGTGCTGGCGTCTTATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTTGCGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCG-GA
* * ** *
593499 -AACCTGACCAGCGGCATTGGGGTTTCGGTGATTGGGGGG-GAGGGGG-GCTGCGCACAAGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCG-GGGGGTG-TGCGCACATGATGT
* *
593561 GCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
593626 -ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
593690 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTCGCCGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
*
593755 TTTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
387 TGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
593820 AATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
593885 TTGCCATGCAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
593950 CATTGGCATAGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTT
582 CATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** ** * *
594015 GCGCATCCTGCCTTTATGGCCGGTGTAGTGCCTACCCGCCCGCCCGTTTTGTCGGTTGGCTTAGG
647 GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *** * *
594080 CATACGGAGTTGATTCCCAGTGTAAGATTAGACCGGATTGAGGGTTACAGTAGCAGGATCGGTAG
712 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGATCGGCAG
* * * ** * * *
594145 CACATAGGGGGCACCCAACC-AAACCTCGGCTTGTGCATCCTGCCTCTCTGGCCGGCTGAGCTCG
777 CACGTAGGGGGGACCCGACCGATCCCT-GGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * *
594209 CGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
594263 GCATA-GGAGTTCATTCCCAGTGTAAGATCGGACC-GGACCGTGGGTTGCGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGG-CCGAGGGTTGCGGGTGCACATGCTGG
* *
594326 GCTCGGGCATGTGCTGGTGCCGCATTTTTTTT-GCCCAGGGCACCA---T-----CAT---CGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * *
594379 GAACCTGACCGACGACATTAGAGTTCCGACGATTAGGGGGGCGGGGGGTGCTGTGCACACATGAT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGGC-GGGGG-G-TGTGCGCACATGAT
* * *
594444 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCTCTCATCACACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
594509 CACACCCCCTTTAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
594574 AATGGGGACACCTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
594639 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
386 TTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
** * * *
594704 GGAATTTT-AAAAAATCTCGAACCGTAAAAA-TTTCAAAAATCATGAAAAATAGAAAACGAGTCA
450 AAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
594767 T-TTGGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 TCTT-GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
594831 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
579 TGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
594896 CTTGCACATCCCGCCTCTTTGGCCGACGTAGTGCCTGCCCGCTCGCTCGTTTCATCGGTTGGCTT
644 CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * *
594961 AGGCATACGAAGTTCATTCTCAGTCTAAGATCAGACCAGATCGAGGTTTGTAGTAGTAGGATTGG
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGATCGG
* * * * * * * * *
595026 TAGCATGCAGGGGGGGA-CCAACTGATCCCCGACTTGTGCATCTTGCCCCTCTGGTCGGCTGAGC
774 CAGCACGTA-GGGGGGACCCGACCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGC
* * * * *
595090 TCCCACACGCTCGTTTCATGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * * *
595147 GCATACAGAGTTCATTCCCAGTGTAAGATTGGACC-GGACAGTGGGTTGTGGGTGCGCCTACTGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGG-CCGAGGGTTGCGGGTGCACATGCTGG
* * ** * * *
595211 GATCAGGCATGTGCTGGTGCCACATTTTTTTTTCGCTTGGTGCACCATCGTCAGAGCATCGTCGG
65 GCTCGGGCATGTGCTGGTGCCACA-TTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGG
** * ** * *
595276 AGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGCGGGGGGTGTCCGCTTAAGATTTG
129 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTG
* * * *
595341 CGATGGGAGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
595406 ACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
595471 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTGTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
* * * *
595536 -TGCATGCCAAAAAAAATAAAAGCATCACGTCTACCATGTTTGGGGCCAAAACTCCATCTGAAAA
388 GTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAA
* ** *
595600 AAATTTAAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT-AGTGAAAAATAAAAAACGAGTCG
451 AAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCG
*
595664 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
595729 GGCATTGGCATAGCAACAATATGAAGATGTGCCTAAACACACCTGCCACCCTATCGATCCACGGC
580 GGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * ** * * * *
595794 TTACGCATCCTGCCTCTCTGGCCGGTGCAGTGCCTGCCTGCCCGCTCGTTTCGTCAGTTGGCTTA
645 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** *
595859 GGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGTGATAGCAAGATCGGC
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGATCGGC
* * * * * ** *
595924 AACACGTAGGGGGGGACCCGACCGAACCCCGACTT-TCGCATCCTGCCCTTCTGGCATGCTAAGC
775 AGCACGTA-GGGGGGACCCGACCGATCCCTGGCTTGT-GCATCCTGCCCCTCTGGCCGGCTGAGC
*
595988 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAATCTAA
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
** ** * * *
596045 GCATACGGAGTTCATTCCCAGTGTAAGATTAGATTAGACCGAGGGTTGTGGGTGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGGCCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
596110 CTCAGGCATGTGCTGGTGCCACATTTTTTTTTCACTCGGGGCACCATCGCCGGAGCATCACCGGA
66 CTCGGGCATGTGCTGGTGCCACA-TTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * *
596175 GAACCTGACCGGCTGTATTGGGGTTCCGACGATTGGGGGTACGGGGGGTATGCGCACATGATGTG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGG-GCGGGGGGTGTGCGCACATGATGTG
* * * * *
596240 CAATCGGTGCTGGTACTTGGCCCTTATACTAGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * **
596305 ACCCCTTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTTTCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
596370 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTCTAGCTGAATTTTTGTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
596435 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCCAAG-TTGGCGGCCAAAACCTCTTTCTG-A
389 TGCATGCC-AAAAAAATACAAGGATCACGTCTA-CCAAGTTTGG-GGCCAAAA-CTCCTTCTGAA
* * * ** * *
596498 AAATTTTTTAAAAAATCCCGAAACCGTAAAAAGTTTGGAAAATCGTGAAAACTAGAAAAAC-AGT
450 AAAATTTTAAAAAAATCCCG-AACCATAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGT
* *
596562 CGTCTTGCCATGGAACTTCACATGAAGGCTTACGGGACCATTGTATG-ATTTAACAAGCCCATAG
513 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAG-CCATA-
* * *
596626 GAAATGGCA-TGGCGTGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCC
575 AAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* ** *
596689 A-GGCCTTGCGCATCCCGCCTCTCTAG-C--CG-A----CCGCCACG---TATCGTTTCGTTGGT
640 ACGG-CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCC-CGCCCGCTCGTTTCGTCGG-
** ** *
596742 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTACGGTAGCA
702 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCA
* * * * * * * **
596807 GGATCAGTAGCACGTA-GGGGGACCTGACCAATCCCCGGCTTGCGCATCCTGCACAGCTGGCCGG
767 GGATCGGCAGCACGTAGGGGGGACCCGACCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGG
* ** * * **
596871 CTAAGCGATCACACGTTCGTTTCGTGGGTTGACTTAATCATACAGAGTTCATTCCCAGTCTAA
832 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * ** * *
596934 GCATATGGAATTCATACCTAGTGTAAGATCGGA-TTGGACCGAGGGTTGCAGGTGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGG-CCGAGGGTTGCGGGTGCACATGCTGG
* * ** * * * ** *
596998 TCTCGGGCATGTGTTGGTGCTGCATTTCTTTTCACCCGGGGCAACATCGTCGGAGCATCATCGAA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * *
597063 GAATCTGACCGGTGGCATTGGGGTTCCGATGATTGAGGGGCGGGGGGGTGTGCGCACATGATGTG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGC-GGGGGGTGTGCGCACATGATGTG
*
597128 CGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
597193 ACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
597258 AGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
597323 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAGAACTCCTTCTAAAAAA
389 TGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
** * * * *
597388 ATTAAAAAAAAAATCTCAAACCATAAAAAGTGTCAAAAATCATGAAAAATATAAAACGAGTCGTC
453 ATT-TTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
597453 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
597518 CATTTGCATGG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 CATTGGCATGGCAA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * * * ** *
597582 TGCGCATCCCGCCTCTCTGATCGGCGTAGTGCCCGCCCGCTCACTCGTTTAATCGATTGGCTTAG
646 TGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** ** * **
597647 GTATACGGAGTTCATTCATAGTCTAAGATCAGACTGGATAGAGGGTTGTGGCAATAGGATCGGCA
711 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGATCGGCA
* * * * ** * * *
597712 GTAGGCAGGGGGGACCCGGCCGATCCCTGGCTTACGCATCTTGCCCCTCTAGCTGGCTGAGCGCC
776 GCACGTAGGGGGGACCCGACCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
597777 CGCACGCTCGTTTTGTGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAA
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** ** * * * * *
597831 GCATACAAAGTTTGTTCCTAGTGTAATATCAGACCAGACCGAGGGTTGCAGGG-GCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGGCCGAGGGTTGC-GGGTGCACATGCTGG
* *
597895 GCTCGGGCATTTGCTGGTGCCGCA--TTTTTT--------------T--TC---GC-T----GGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * *
597934 GAACCTAACCGGTGGCATTGGGGTTTCGATGATTGGGGGGCGGTGGGGTGTGCGCACATGATGTG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGG-GGGGTGTGCGCACATGATGTG
* * * * * *
597999 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCTTATCCCTGATAAAACCTCAAGAACTCAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
598064 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCAATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
598129 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
598194 TGCAAGCCAAAAAATATACAAGGATCACGTCTA
389 TGCATGCCAAAAAA-ATACAAGGATCACGTCTA
598227 ATAGCTTAAC
Statistics
Matches: 5798, Mismatches: 741, Indels: 237
0.86 0.11 0.03
Matches are distributed among these distances:
870 8 0.00
871 264 0.05
875 1 0.00
876 2 0.00
879 2 0.00
880 2 0.00
881 27 0.00
882 6 0.00
883 6 0.00
884 363 0.06
885 195 0.03
886 242 0.04
887 139 0.02
888 323 0.06
889 159 0.03
890 138 0.02
891 463 0.08
892 284 0.05
893 265 0.05
894 718 0.12
895 678 0.12
896 217 0.04
897 456 0.08
898 404 0.07
899 252 0.04
900 122 0.02
901 54 0.01
902 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGGCCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGATCGGCAGCACG
TAGGGGGGACCCGACCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:594272 original size:25 final size:26
Alignment explanation
Indices: 594237--594288 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
594227 GTTGACTTAG
594237 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
594263 GCATA-GGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
594288 G
1 G
594289 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:598588 original size:26 final size:26
Alignment explanation
Indices: 598559--598611 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
598549 GTTGACTTAG
*
598559 GCATAC-GAAGTTTATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
*
598585 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
598611 G
1 G
598612 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:606456 original size:26 final size:26
Alignment explanation
Indices: 606420--606472 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
606410 GTTGACTTAG
*
606420 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
606446 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
606472 G
1 G
606473 TAAGATCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:608996 original size:26 final size:26
Alignment explanation
Indices: 608967--609019 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
608957 GTTGACTTAG
*
608967 GCATAC-GAAGTTTATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
*
608993 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
609019 G
1 G
609020 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:609366 original size:780 final size:779
Alignment explanation
Indices: 607860--609414 Score: 2186
Period size: 780 Copynumber: 2.0 Consensus size: 779
607850 CATATGAAGA
* *
607860 CTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAAAG
1 CTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAAAG
** * *
607925 ATGTGCCTAAACCCACCTACCACCTGATCGATCCACGGCTTGTGCATCCCGCCTCTCTGGACGGC
66 ATGTGCCTAAACCCACCTACCACCTGATCGATCCACGGCTTGCACATCCCACCTCTCTAGACGGC
*
607990 GTAGTGCCCGCCCGTCCGCTCGTTTCGTCATTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
131 GTAGTGCCCGCCCGTCCGCTCGTTTCGTCATTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
608055 AGATCAGACCAGGCCGAGGGTTGCGACAGTAGGATTGGCAGCACGCAGGGGGGACCCACCCGATC
196 AGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGACCCACCCGATC
* ** * *
608120 CCTGGCTTGTGCATCCTTCCCCTCTGGCCGGTTGAGCGCCCGCACGCTGGTTTCGTGGGTTGACT
261 CCCGGCTTGCCCATCCTTCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * *
608185 TAAGCATATGGAGTTCATTCCCAATCCAAGTATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
326 TAAGCATACGAAGTTCATTCCCAATCCAAGCATACAGAGTTCATTCCCAGTGTAAGATCAGACCG
* *
608250 AGGGTTGCGGGTGCACATGCTAGGCTTGAGCATGTGCTAGTGCCGCATTTTTTATTCGCTCGGGG
391 AGGGTTACGGGTGCACATGCTAGGCTCGAGCATGTGCTAGTGCCGCATTTTTTATTCGCTCGGGG
* * * * *
608315 CACCAATGCCGGAGCATCGCCGGAGAACCTAAATCAGTGGTATTGGGGTTCCGACGCTTGGGGGG
456 CACCAATGCCGGAGAATCGCCAGAGAACCTAAACCAGTGGCATTGGGGTTCCGACGATTGGGGGG
*
608380 CACGGGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCTT
521 CACGGGGGGGTGTGCCCACATGATGTGCGACGGGTGCTGGCACTTGGCCCTTATATTGGCCCCTT
* * *
608445 ATCCCTGATAAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCT
586 ATCCCTCATAAAACCTCAAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACT
*
608510 GCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
651 GCCAGTAGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
608575 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA-AAAATATACAAGGATCACGTCTAATAG
716 CTTCCAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAA-ATACAAGGATCACGTCTAATAG
* *
608639 CTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGGCAGAAATATGAAG
1 CTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAAAG
* * * *
608704 ATGTGCCTAAACCCACCTACCACCCT-ATCGATCCATGGCTTGCACATCCCATCTTTCTAGCCGG
66 ATGTGCCTAAACCCACCTACCA-CCTGATCGATCCACGGCTTGCACATCCCACCTCTCTAGACGG
*
608768 CGTAGTGCCCGCCCG-CTCGCCTCGTTTTGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAG
130 CGTAGTGCCCGCCCGTC-CG-CTCGTTTCGTC-ATTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * ** * *
608831 TCTAAGATTGGACCAGACTGAGGGTTGCGGTAGCAGGATCGATAGCACACTGGGGGGACCCGA-C
192 TCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGACCC-ACC
* *
608895 CGATCCCCGGCTTGCCCATCC-TGCCCTCTGGCCGGTTGAGCGCCCGCATGCTCGTTTCATGGGT
256 CGATCCCCGGCTTGCCCATCCTTCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * *
608959 TGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCA
321 TGACTTAAGCATACGAAGTTCATTCCCAATCCAAGCATACAGAGTTCATTCCCAGTGTAAGATC-
* * * * *
609024 GACTGAACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGTTGGTGCCTCA-TTTTT-T
385 -A--G-ACCGAGGGTTACGGGTGCACATGCTAGGCTCGAGCATGTGCTAGTGCCGCATTTTTTAT
* * * *
609087 TCGCTCGGGGCACC-ATCGTCGGAGAATCGCCAGAGAACCT-GACCGGTGGCATTGGGGTTCCGG
446 TCGCTCGGGGCACCAAT-GCCGGAGAATCGCCAGAGAACCTAAACCAGTGGCATTGGGGTTCCGA
* * * * **
609150 TGATT-GGGGG--CGAGGGGGGTGTGGCGCACATGATGTGTGACGGGTG-TGGGTACTTGGCTGT
510 CGATTGGGGGGCACG-GGGGGGTGT-GCCCACATGATGTGCGACGGGTGCT-GGCACTTGGCCCT
* * * *
609211 TATATTGG-CCCTCTATCCCTCATCAAACCTCGAGAACTCAGATCCCCTTAAAGTGCATTTGAGA
572 TATATTGGCCCCT-TATCCCTCATAAAACCTCAAGAACTCAGACCCCCTTAAAGAGCATTTGAGA
*
609275 TTTTATAGGTTTACTGCCAGTAGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTC
636 TTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTC
*
609340 ACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
701 ACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGG
609405 ATCACGTCTA
766 ATCACGTCTA
609415 CCAAGTTTGG
Statistics
Matches: 685, Mismatches: 75, Indels: 31
0.87 0.09 0.04
Matches are distributed among these distances:
778 3 0.00
779 239 0.35
780 328 0.48
781 30 0.04
782 35 0.05
783 6 0.01
784 44 0.06
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.27
Consensus pattern (779 bp):
CTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAAAG
ATGTGCCTAAACCCACCTACCACCTGATCGATCCACGGCTTGCACATCCCACCTCTCTAGACGGC
GTAGTGCCCGCCCGTCCGCTCGTTTCGTCATTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGACCCACCCGATC
CCCGGCTTGCCCATCCTTCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
TAAGCATACGAAGTTCATTCCCAATCCAAGCATACAGAGTTCATTCCCAGTGTAAGATCAGACCG
AGGGTTACGGGTGCACATGCTAGGCTCGAGCATGTGCTAGTGCCGCATTTTTTATTCGCTCGGGG
CACCAATGCCGGAGAATCGCCAGAGAACCTAAACCAGTGGCATTGGGGTTCCGACGATTGGGGGG
CACGGGGGGGTGTGCCCACATGATGTGCGACGGGTGCTGGCACTTGGCCCTTATATTGGCCCCTT
ATCCCTCATAAAACCTCAAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACT
GCCAGTAGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCCAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTAATAG
Found at i:611222 original size:523 final size:518
Alignment explanation
Indices: 610229--611244 Score: 1481
Period size: 523 Copynumber: 2.0 Consensus size: 518
610219 CTAACCATAC
* * *
610229 GGAGTTCATTCGCAGTGTAAGATCAGACCAGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGG
1 GGAGTTCATCCCCAGTGTAAGATCAGACCAGATCGAGGGTTACGGGTGCACATGCTGGGCTCGGG
* * * *
610294 CATGTGCTGGTGTCGCATTTTTTCCCTCGGGGCATCATCGCCGGAGAATCACCAGAGAACCTGAC
66 CATGTGCTGGTGTCGCATTTTTTCCCTCGGGGCACCATCACCGGAGAATCACCAGAGAAACTAAC
* * * **
610359 CGGCGGCATTGGGGTTCCGGCGATTGGGGGTGGGGGTGGTGTGCGCACATGATGTGCGATGGGTG
131 CGGCGGCATTGGGGCTCCGACGATTGGGGGAGGGGGTCATGTGCGCACATGATGTGCGATGGGTG
* * *
610424 CTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCAGATCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
*
610489 AAGTGCATTTGAGATTTTACAAGTTTACTGCCAGTACCAATTAAAGTGTCTGAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTACCAATTAAAGTGTCTGAAATGGGGACACT
* *
610554 TTTTTCAAATGGTCACAAATCCCTGTACACTTCCAATTTTTAGCTGAATTTTTTGTGCATGCCAA
326 TTTTTCAAATGGTCACAAATCCCTGTACACTTCCAATTTTTAGCTGAATTTTTTATGCAAGCCAA
* * * * * * *
610619 CAAAAATACAAGGATCACGTCTACCGAGTTTGGGGCTAGAACTCCTTCTGGAAAAATTTTAAGAA
391 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAA
610684 AATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAATAGAAAACGGGTCCCAGACAATAT
456 AATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAATAGAAAACGGGTCCCAGACAATAT
* ** *
610747 GGAGTTCATCCCCAGTGTAAGATCGGACTGGA-CTGAGGGTTATGGGTGCACATGCTGGGCTCGG
1 GGAGTTCATCCCCAGTGTAAGATCAGACCAGATC-GAGGGTTACGGGTGCACATGCTGGGCTCGG
* ** *
610811 GCATGTGCTGGTAGT-GCATTTTCTTTCACC-CGGGGCACCATCACCGGAGCATCGTCGGAGAAA
65 GCATGTGCTGGT-GTCGCA-TTT-TTTC-CCTCGGGGCACCATCACCGGAGAATCACCAGAGAAA
*
610874 TTAACCGGCGGCATTGGGGCTCCGACGATTGGGGGAGCAGGGGTCATGTGCGCACATGATGTGCG
126 CTAACCGGCGGCATTGGGGCTCCGACGATTGGGGGAG--GGGGTCATGTGCGCACATGATGTGCG
610939 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
189 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * * * *
611004 CGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCC-TTTAAAGTGTCTGAAAT
254 C-CCCTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTA-CCAATTAAAGTGTCTGAAAT
611068 GGGGACAC-TTTTTCAAATGGT-ACAAAAT-CCTGTACACTT-CAAGTTTTTAAGCTGAATTTTT
317 GGGGACACTTTTTTCAAATGGTCAC-AAATCCCTGTACACTTCCAA-TTTTT-AGCTGAA-TTTT
* *
611129 TTATGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGTGCCAAAACTCCATCTGAA
378 TTATGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAA
*
611194 AAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
443 AAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
611245 TAAAAATGAG
Statistics
Matches: 443, Mismatches: 42, Indels: 21
0.88 0.08 0.04
Matches are distributed among these distances:
517 1 0.00
518 70 0.16
519 5 0.01
520 65 0.15
521 20 0.05
522 111 0.25
523 169 0.38
524 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (518 bp):
GGAGTTCATCCCCAGTGTAAGATCAGACCAGATCGAGGGTTACGGGTGCACATGCTGGGCTCGGG
CATGTGCTGGTGTCGCATTTTTTCCCTCGGGGCACCATCACCGGAGAATCACCAGAGAAACTAAC
CGGCGGCATTGGGGCTCCGACGATTGGGGGAGGGGGTCATGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTACCAATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAATCCCTGTACACTTCCAATTTTTAGCTGAATTTTTTATGCAAGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAA
AATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAATAGAAAACGGGTCCCAGACAATAT
Found at i:615766 original size:860 final size:860
Alignment explanation
Indices: 613110--624155 Score: 12029
Period size: 900 Copynumber: 12.5 Consensus size: 860
613100 TTTTTTACTG
*
613110 TGCCAATG-CA-TTTTATGGCTTGTAAATTCATACAAT-GTCCCTTAAGCCTTCATGTGACGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* *
613172 CATGGCAAGACGACTCATTTTCTATTTTTCTCAGATTTT-GAAACTTTTTACGGTTCAGGATTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCAC-GATTTTCGAAACTTTTTACGGTTCAGGATTTT
*
613236 TTTAAAAACTTTTTT-AGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTG--CCTTTGTAA-TTT
130 TTT-AAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTGTAATTTT
* **
613297 TTTGGCATGCACACAAAAAATTCAGCTAAAAACTCGAAGTGTACAGAATTTTGTGGTCATTTGAA
192 TTTGGCATGCACA-AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAA
* * * * * * *
613362 CAAAA-TATCCCTATTTTAAACAGTTTAATGGCTACTGGAAGCAAACTTGTAAAATCCTCAAATG
256 -AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT-CTCAAATG
*
613426 CTCTTTAAGGGGGTTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
319 CTCTTTAAGGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
*
613491 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCTCAATCGTCGGAACCCTAATG
383 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCC-CAATCGTCGGAACCCCAATG
* *
613556 CCACCGGTCAGGTTCTCTGGCGATGGTGCCCCGAGCAAAAAAAAATATGGCACCAGCACATGCCT
447 CCGCCGGTCAGGTTCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATATGGCACCAGCACATGCCT
** * * *
613621 GAGCCCAGCATGTGCACCCACAACCCTCGATATGGTCTGAT-CTTACACTGGGAATGAACTCCGT
512 GAGCCCAGCATGTGCACCTGCAACCCTCAATTTGGTCCGATGCTTACACTGGGAATGAACTCCGT
* * ** * * * * *
613685 ATGCCTAAGTCAACACACAAAATGAGCGTATGGGCGCTCAGGCTGCCAGAGAGGCAGGTTGCACA
577 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * * ** * * *
613750 AGCCAGGGATCGGTCGGGTCCCACCCTATGTGCTACTAATCCTACTGCTGCAACCCTCGATGC-A
642 AGCCGGGGATCGCTCGGGTCCCCCCCTACGTGCTGCCGATCCTACTGCCGCAACCCTCGGT-CTG
* * *
613814 GTTTAATCTTAGACTAGGAATGAACTCTC-TATGCCTAAGGCAACCGACGAAACGAGCGGGCGGG
706 GTCTAATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCGACGAAACGA----GCGGG
* ** * * *
613878 CGGGCGGGCACTATGCCGGCCAGAGAGGCAAGATGCGTAAGCCATGGATCGATAGGGTGGTTGGT
766 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * **
613943 GGGTTTAGGCACATCTTCATATTTTTACTG
831 GGGTTTAGGCACATCTTCATATTTCTGCCA
*
613973 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGACGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
614038 CATGGCAAGACGACTCATTTTCTATTTTTCCCGATTTTGGAAACTTTTTACGGTTCAGGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTT
*
614103 TTAAAACTTTTTT-AGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTT
131 TTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTT
* **
614167 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGTCATTTGAACAAA
195 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAA-AAA
* * * * * * *
614232 A-TATCCCTATTTTAAACAGTTTAATGGCTACTGGAAGCAAACTTGTAAAATCTCAAATGCTCTT
259 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
614296 TAAGGGGGTGTGAGTTCTC-ATGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCA
324 TAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
614360 GCACCCATCGCACATCATGTGCGTACACCCCCCCGCCCCCTCAATCGTCGGAACCCTAATGCCAC
388 GCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCC-CAATCGTCGGAACCCCAATGCCGC
614425 CGGTCAGGTTCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATATGGCACCAGCACATGCCTGAGC
451 CGGTCAGGTTCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATATGGCACCAGCACATGCCTGAGC
** ** * *
614490 CCAGCATGTGCACCCACAACCCTCGGTATGGTCTGAT-CTTACACTGGGAATGAACTCCGTATGC
516 CCAGCATGTGCACCTGCAACCCTCAATTTGGTCCGATGCTTACACTGGGAATGAACTCCGTATGC
* * *** * * *
614554 CTAAGTCAACACACAAAATGAGCGTATAGGCGCTCAGGCTGCCAGAGGGGCAGGATGCACAAGCC
581 CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * ** * * ** *
614619 AGGGATCGGTCGGGTCCCACCCTACGTGCTACTAATCCTACTGCTGCAACCCTCGATCCAGTTTA
646 GGGGATCGCTCGGGTCCCCCCCTACGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCTA
* * *
614684 ATCTTAGACTAGGAATGAACTCTGTATGCCTAAGGCAACCGACGAAACGAGCGGGCGGGCGGGCA
711 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* ** ** *
614749 CTATGCCGGCCAGAGAGGCAAGATGCGCAAGCAATGGATCGATAGGGTGGTTGGTGGGTTTAGGC
776 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * **
614814 ACATCTTCATATTTTTACTG
841 ACATCTTCATATTTCTGCCA
*
614834 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * *
614899 CATGGCAAGACGACTCATTTTCTATTTTTCCCAATTTTGGAAACTTTTTACGGTTCAGGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTT
* *
614964 TTAAAACTTTTTAAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTTG
131 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTTG
* * * *
615029 GCATGCACAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAACAAAG
196 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
*
615094 TGTCCCCATTTC-GAACAGTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
261 TGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
615158 AAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
325 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
615223 ACCCATCTCACATCCTGTGCGCACACCCCCCGCCCCTCCAATCGTCGGAACCCCAATGCCGTCGG
390 ACCCATCGCACATCATGTGCGCACACCCCCCGCCCC-CCAATCGTCGGAACCCCAATGCCGCCGG
*
615288 TCAGGTTCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATATCGCACCAGCACATGCCTGAGCCCA
454 TCAGGTTCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATATGGCACCAGCACATGCCTGAGCCCA
* *
615353 GCATGTGCACCTGCAACCCTCAATTTGGTCCGAT-CTTACACTAGGAATGAACTCTGTATGCCTA
519 GCATGTGCACCTGCAACCCTCAATTTGGTCCGATGCTTACACTGGGAATGAACTCCGTATGCCTA
* * ** * ** ** * *
615417 AGTCAACCCACGAAACGAGTGTATGGGCGTTCAGTTGGTTAGAGGGGCAAGATGCGTAAGCCGGG
584 AGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG
* * * * * * * *
615482 GATCAGCT-AGGTCCCGCCTTACGTGCTGCCGATCCTACTACCGTAACCCTCAGTCTGGTATGAT
649 GATC-GCTCGGGTCCCCCCCTACGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCTAAT
* * * * *
615546 CTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACCGACGAAACGAGCAGGCGAGCGGGCACT
713 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * * ** * **
615611 ATGCCTGCCAGAGAGGTGCCATGCGCAAGGCGTGGATCGATAGAATGGTAGGTGGGTTTAGGCAC
778 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
615676 ATCTTCATATTTCTGCCA
843 ATCTTCATATTTCTGCCA
*
615694 TGCCAATGCCAGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* *
615759 AATGGCAAGACGAC-CAGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GAGATTT
66 CATGGCAAGACGACTC-GTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAG-GATTT
* *
615822 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTT
129 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTT
615887 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
194 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
* * *
615952 AGTGTCCTCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTATT
259 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * *
616017 TAAGGGGGTGTGGGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCAAAGTACCAG
324 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
616082 CTCCCATCGCACATCATGTGCACACAACCCCCCCACCCCCCAATCGTTGGAACCCCAATGCCGTC
389 CACCCATCGCACATCATGTGCGCAC-A-CCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCC
* * * ** * *
616147 AGTCAAGTTCTCCGATGATGCTCCGATGATGGTGCCCAGGGTGAAAAAAAATACGGCTCCAGCAC
452 GGTCAGGTTCT-C--TG--G---C---GATGGTGCCCCGGGCAAAAAAAAATATGGCACCAGCAC
* * * ** *
616212 ATGCCTGGGCCCAGCTTGTCCA-CTAGCAACCCTCGGTCTGGTCCGAT-CTTACACTGGGAATGA
506 ATGCCTGAGCCCAGCATGTGCACCT-GCAACCCTCAATTTGGTCCGATGCTTACACTGGGAATGA
* * * * *
616275 ACTTCGTATGCCTAAGTCAACCCA-TAAATGAGCGTACGAGCGCTCAAG-CTGCCAGAGGGGCAG
570 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTC-AGCCGGCCAGAGGGGCAG
* * * * * * * ** * * *
616338 GATGCACAAGCCAGGGATCGGTCGGGTCCCACCCTGCATGCTACTAATCCTATTACCACAACCCT
634 GATGCGCAAGCCGGGGATCGCTCGGGTCCCCCCCTACGTGCTGCCGATCCTACTGCCGCAACCCT
** * * * *
616403 CGGTCCAGTTTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGGCAACCGACGAAACGAGCG
699 CGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * * * * *
616468 GGCGGGCGGGCACTACGTCAGCTAAAGAGGCGAGATGCGCAAGCCGTGGATTGATGGGGTGGCAG
764 GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * **
616533 GTGGGTTTAGGCATATCTTCATATTTTTACTG
829 GTGGGTTTAGGCACATCTTCATATTTCTGCCA
* *
616565 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGACTTCATGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * * *
616630 CATGGCAAGACGACTAGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAAGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTT
* * * *
616695 TTAAAATTTTTTGAGAAGGA-TTTTCGGCCCCAGAGTTGGTAGACATGATCCTTGT-ATTTTTGT
131 TTAAAATTTTTTCAGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTT-T
* *
616758 TGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
194 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
* * *
616823 AGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTTAAATGCTCTT
259 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
616888 TAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATAT-AGGGCCAAGTACCAG
324 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
616952 CACCCATTGCACATCATGTTCACACACCCCCACCGCCCCCCAATCGTCAGAACCCTAATGCCGCC
389 CACCCATCGCACATCATGTGCGCACA-CCCC-CCGCCCCCCAATCGTCGGAACCCCAATGCCGCC
* * * *
617017 GGCCAGGTTCTCCGGTGATGGTGCCCCGGGC-GAAAAAAA-ATGGCACCAGCACATGCACT-AGC
452 GGTCAGGTTCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATATGGCACCAGCACATGC-CTGAGC
* *
617079 CCAGCATTTGCACCTGCAACCCTCGATCCAGTCCGATCTTACACTTGGAGTGAACTCCATATGCT
516 CCAGCATGTGCACCTGCAA-CC-C--T-CA-----A---T----TT---G-G---TCC-GATGCT
* * * ** * *
617144 TAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCCCGAAACAAGCGTGCGGGTGCTCAGCTG
556 TACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
* * * * * *
617209 GCCAGAGGGGTAGGATGCGCAAGCCGAGGATCGATCGGGT-CCCCCCTACGTGCTGTCGATCTTT
621 GCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGCTCGGGTCCCCCCCTACGTGCTGCCGATCCTA
* * ** *
617273 CTACTGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
686 CTGCCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * ** * * *
617338 GAGGAAATGAGCAGGCGGGCGAGCATTACGTTGGCCAGAGAGGCGGGATGCGTAAGCTGTGGATT
751 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
617403 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
816 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
617448 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* ** * *
617513 CATGGCAAGACAACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTACGGTTCGGGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTT
* * * *
617578 TTTAAATTTTTTCAGAAGGTGTTTTGG-CCCTAACTTAGTAGACGTGATCCTTGT-ATTTTTATT
131 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTT-TT
617641 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
195 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* *
617706 GTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTT
260 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
617771 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATAAAAGGGCCAAGTACCAGC
325 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * *
617835 ATCCATCACACATCATGTGCGCACA-----C-CCCCCCAATCGCCGAAATCCCAATGCCACCGGT
390 ACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGT
* *
617894 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGTGAAAAGAAAATATGGCACCAGCACAT
455 CAGG-T-T----C--T-CT--GGCGATGGTGCCCCGGG-CAAAAAAAAATATGGCACCAGCACAT
* * * ** *
617959 GCCCGAGCTCAGCATGTGCACCCAG-AACCCTCAATCCGGTCCAAT-CTTACACTGGGAATGAAC
508 GCCTGAGCCCAGCATGTGCA-CCTGCAACCCTCAATTTGGTCCGATGCTTACACTGGGAATGAAC
618022 TCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
572 TCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
* * * * * * * * *
618087 GCGCAAGCTGGGGATCGGC-CAGATCCCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTTG
637 GCGCAAGCCGGGGATC-GCTCGGGTCCCCCCCTACGTGCTGCCGATCCTACTGCCGCAACCCTCG
* * *
618151 GTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG
701 GTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
** * *
618216 CGGGCGGGCACTACGTTGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGT
766 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
618281 GGGTTTAGGTACATCTTCATATTTTTGCCA
831 GGGTTTAGGCACATCTTCATATTTCTGCCA
* * *
618311 TGCCAATACCATTTTTATGGTTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * * * *
618376 CATAGCAAGATGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGA-TTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTT
* * * *
618440 TTAGAATTGTTTCAGAAGGATTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTT
131 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTT-TT
* * *
618504 GGCATGCATAAAAAAAATCAACTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
195 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
*
618569 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTT
260 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
618634 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAATGGCCAAGTACCAGC
325 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * *
618699 ATCCATCCCACATCATGTGTGCACA-------CCCCCCAATCGTCGAAACCCCAATGCCGTCGAT
390 ACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGT
* * *
618757 CAGGTTTTCCGACGATGCTCCGGCGATGGTGCCCCGGATG-AAAAAATAATGTGGCACCAACACA
455 CAGG--TT----C--T-CT--GGCGATGGTGCCCCGG--GCAAAAAAAAATATGGCACCAGCACA
* * *
618821 TACTTGAGCCTAGCATGTGCACCTAG-AACCCTCAATCCGGTCCGATCTTACACTGGGAATGAAC
507 TGCCTGAGCCCAGCATGTGCACCT-GCAACCCTC-A---------A--TT----T--G---G---
* * * * *
618885 TCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGC
547 TCCGATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
* * *
618950 GCTCAGCCTGCCAGAGGGGTAGGATGCACAAGCCGGGGATCGAC-CGGGTCCCCCCCTACGTGCT
612 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG-CTCGGGTCCCCCCCTACGTGCT
* * * * * *
619014 GCCGATCCTATTGCCACAACCCTCAGTCTGGTCTGATATTAGACTAGGAATGAACTCCGTATGCC
676 GCCGATCCTACTGCCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
619079 TAAGCCAACCGATGAAACGAGTGAGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGTGCAA
741 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* * * * **
619144 GCCGTGGATCGATAGAGTGGTAGGTGGCTTTAGGCACATCTCCATATTTCTACTG
806 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
619199 TGCCAATGCCATTTTTATGGCTTGTAAATACATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * * * * **
619264 CATGGCAGGATGACTTGTTTTCTATTTTTCACAATTTTGGAAACTTTTTACAGTTTGGGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTT
* ** * *
619329 TTAAAATTTTTTCAAAAGGAGTTTTTTCCCCACACTTGGTAGACATGATCCTTGT-ATTTTTGTT
131 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTT-TT
*
619393 GGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
195 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* * **
619458 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCAATTT
260 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
619523 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGC
325 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
619588 ACCCATCGCACATCATTTGC-CACACCCCCCCCGTCCCCTCCAATCGCCCGAACCCAAATGCCGC
390 ACCCATCGCACATCATGTGCGCACA--CCCCCCG-CCCC-CCAATCGTCGGAACCCCAATGCCGC
** * * * *
619652 TAGTCAGGTTCTCCGACGATGCTTCGGTGATGTGCCCCAGGCGAAAAAAAAATGTGGCACCAGCA
451 CGGTCAGGTTCT----C--TG--GCGATG--GTGCCCCGGGC-AAAAAAAAATATGGCACCAGCA
* *
619717 CATGCCCGAGCCCAGCAT-TGGCAACC-GCAACCCTCAGAATTGTCCGATCTTATACTGAGAATG
505 CATGCCTGAGCCCAGCATGT-GC-ACCTGCAACCCTC--AATT-T--GGTC-----C---G-ATG
* * * * * *
619780 AACTTCATAGGCTTAGATTGGGAACGAACTCCGTATGCCTAAGTCAATCGACGAAACGAGCGTGT
554 --C-T--TA--C----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
** * * *
619845 GATCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCATGA-G
608 GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGCTCGGGTCCCCCCCT-ACG
** * * * * * * *
619909 TGCTATCGATCCTGCTGCTGCATCCCTTGATCTGGTCCAATTCTTAGACTGGGAATGAACTCAGT
672 TGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCTAA-TCTTAGACTGGGAATGAACTCCGT
* * * ** * ** *
619974 ATGCCTAACCCAACCGATGAAATGAGTAGGCGGACGGGCACTACGTTGGCCAGAGAGGCAGGATG
736 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
* * * *
620039 CGAAAGCCGCGGATC-ATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCA
801 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
620098 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTAATGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
620163 CATGGCAAGACGACTCGTTTTCAATTTTTCACGATTTTGGAAACTTTTTACGGTTCGGGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTT
* ** * *
620228 TAAAAATTTTTTCAGAAGGAGTTTTTTCCCCACACTTGGTAGACATGATCCTTGT-ATTTTTCTT
131 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTT-TT
* * * *
620292 GGCATGCACAAAACAATTCAGCTAAAAATTTGAAGTGTACAGGATTTTGTGACCATTTCAAAAAA
195 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* * **
620357 GTGCCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCAATTT
260 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
620422 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGC
325 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * ** * * *
620487 ACCCATCACACATCATGTGCACACACCCCCCATTCCCCTCCAATCGCCCAAACACAAATGCCACC
390 ACCCATCGCACATCATGTGCGCACACCCCCC--GCCCC-CCAATCGTCGGAACCCCAATGCCGCC
* * **
620552 GGTCAGGTTCTCCGACGATGTTTCGATGATGGTGCCTCGAGTG-AAAAAAAAATGCGGCACCAGC
452 GGTCAGGTTCT----C--TG----G-CGATGGTGCCCCG-G-GCAAAAAAAAATATGGCACCAGC
* * *
620616 ACATGCCCGAGCCCAGTATGTGCAACC-GCAACCCTCGGTCCTGTCTGATCTTATACTGAGAATG
504 ACATGCCTGAGCCCAGCATGTGC-ACCTGCAA----C---CC--TC--A----AT-TTG-G--T-
* * * * *
620680 AACTCCATAGGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGTGTGT
548 --C-CGAT--GCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
* * * * * * *
620745 GGGCGCTCAGCCGACCAGAGGGGCAGGATGTGCAAGCCAGGGATCGATCGAGTCCACCCATGA-G
608 GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGCTCGGGTCCCCCCCT-ACG
* * * * * * *
620809 TGCTGTCGATTCTATTG-C-CAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCAGTA
672 TGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTA
* ** * * *** * **
620872 TGCCTAGGCCAACCGATTAAACGAGCGGACGGGCAGGCACTACGTTAGCCAGAGAGACGGGATAT
737 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* * * *
620937 GAAAGTCGTGGATC-ATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCA
802 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
620995 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
621060 CATGGCAAGATGACTCGTTTT-TAATTTTTCTCGATTTTAGAAACTTTTTACGGTTC-GAGATTT
66 CATGGCAAGACGACTCGTTTTCT-ATTTTTCACGATTTTCGAAACTTTTTACGGTTCAG-GATTT
*
621123 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCTCAAACTTGGTAGACGTGATCCTTGT-ATTTTTG
129 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTT-
* * * *
621187 TTGGCATGCACAAAACAATTCAGTTAAAAACTCGAAGGGTACATGATTTTGTGACCATTTGAAAA
193 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAA
*
621252 AAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
258 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * * *
621317 TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGTGGGCAAATATAAAGGCCAAGTACCA
323 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * **
621382 GCACCCATCACACATAATGTTCGCACACCCCCCCCGCCCCCCCAATCACCGGAACCCCAATGCCG
388 GCACCCATCGCACATCATGTGCGCACA--CCCCCCG-CCCCCCAATCGTCGGAACCCCAATGCCG
* * * *
621447 CCGGTCAGGTTCTCTGGTGATGCTTCGACGAAGGTCCCCCGGGCGAAAAAAAAATACGGCACCAA
450 CCGGTCAGGTTCTC------TG----G-CGATGGTGCCCCGGGC-AAAAAAAAATATGGCACCAG
** *
621512 CACATG-CTCGAGCCCAGCATGTGCACCCATAACCCTTGGTCTGGTCCGATCTTACATTGGGAAT
503 CACATGCCT-GAGCCCAGCATGTG----C---A-CC-T-G-C--AACC---CTCA-ATT-----T
* * * * *
621576 GAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCGAAGTCAACCCACGAAATGAGCGTG
545 G--GTCCG-ATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
* *
621641 CGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGAAAGCCGGGGATCAG-TCGGGTCCCCCCCTAC
607 CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC-GCTCGGGTCCCCCCCTAC
*** ** * * * *
621705 GTGCTTTTGAT-CTTGTGGCTGCAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCG
671 GTGCTGCCGATCCTACT-GCCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCG
* * * * * *
621769 TATGCGTAAGCCAATCGACGAAACAAGCGGGCAGGCGGGCACTACGTCGGCTAGAGAGGCGGGAT
735 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
*
621834 GCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
800 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
621895 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
*
621960 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA-GGATTC-GAGATTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGG-TTCAG-GATTT
* *
622023 TTTTCAAAA-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTT
129 TTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTT
* *
622087 TTGGCTTGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTACAGG-TTTATGTGACCATTTGAAA
193 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT-TGTGACCATTTGAAA
* *
622151 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTC
257 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * * * *
622216 TTTACGGGGGTGTGAGTTCTTGAGGTTTGATAAGAGATAGGGGTCCAATATAAGGGCCAAGTAAC
322 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
622281 AGCACCCATCACACATCATGTGCGCACACCCCCCCCCGCCCCCCCAATCGTTGGAACCCTAATGC
387 AGCACCCATCGCACATCATGTGCGCACA---CCCCCCG-CCCCCCAATCGTCGGAACCCCAATGC
* * * ** **
622346 CTCTGGTCAGGTTCTCCGACGATGCTTCGGAGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCA
448 CGCCGGTCAGG-T-T----C--T-C-T-GGCGATGGTGCCCCGGGCAAAAAAAAATATGGCACCA
** * * **
622411 AAACATGCCCGAGCCTAGCATGTGCACCCACAACCCTTGGTCCAGTCTAATCTTACACTAGGAAT
502 GCACATGCCTGAGCCCAGCATGTGCACCTGCAA--C-----CC--TC-AA--TT----T--G---
* * *
622476 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATG
546 G---TCCG-ATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
* * * * *
622541 CGGGCGCTCAGCCAGCTAGAGGGGCAGGATGCGCAGGCCCGGGATCAG-TCGGGTCCCCCCCTGC
607 CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC-GCTCGGGTCCCCCCCTAC
* * * * ** * * * *
622605 ATGCTACCGATCTTGCTGCCATAACCCTTGGTTTGATCCAATCTTAGACTGGGAATGAACTCCGT
671 GTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGT
* * ** *
622670 ATGCCTAAGCCAACCGATGAAACGAGTGGATGGGCGGGCACTACGCCGGCCAGAGAGTCGGGATG
736 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
* * *
622735 TGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTTTGCCA
801 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
622795 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* *
622860 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCAGGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTT
* * *
622925 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTCTATTTTTTTTG
131 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTTG
*
622990 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGATAAAAG
196 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
*
623055 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTA
261 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
623120 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
326 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* ** ** * * * *
623185 CCCATTGCACATCATGTGCGTGCA-------CCCCCCAATCACCGAAACCCAAATGCCACCGGTT
391 CCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTC
* ****
623243 ATGTTCTCTGGCGATGCTCCTATGATGGTGCCCCGATTGAAAAAAAATATGGCACCAGCACATG-
456 AGGTTCTCT---G--G---C---GATGGTGCCCCGGGCAAAAAAAAATATGGCACCAGCACATGC
* ** * *
623307 CTCGTGCCCAGCATGTGCATTTACAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCC
510 CT-GAGCCCAGCATGTGCACCTGCAA----C---CC--TC--A-ATT----T--G---G---TCC
* * *
623372 ATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGT
550 -GATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGC
* * *
623437 TCAGCCGGCCAGA-GGGCAGGATGCGCAAGCCGGGGATCGAC-CGGGT-CCCCTCTGCATGCTGC
614 TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG-CTCGGGTCCCCCCCTACGTGCTGC
* * * *
623499 CGATCCTACTGCCTCAACCCTCGGTATGGT-TCAATCTTAGACTGGGAATGATCTCTGTATGCCT
678 CGATCCTACTGCCGCAACCCTCGGTCTGGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
623563 GAGCCGACCGACAAAACGAGTGAGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAG
742 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* * *
623628 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTACCA
807 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
623682 TGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * * * * * *
623747 CATGGAAAGACAACTTGTTTTTTATTTTTCACAATTTTTGAAACTTTTTACGATTCGGGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTT
* * * * *
623812 TTAAAATTTATTCAGAAGGAATTTTGGCCCCATACTTGATAGACGTGATCCTTGTATTTTTTTTG
131 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTTG
*
623877 GCATGCACAAAACAATTCAGGC-AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
196 GCATGCACAAAAAAATTCA-GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* * *
623941 GTATCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTT
260 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * **
624006 GAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGCGCCAATATAAGGGCCAAGTGGCAGC
325 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
624071 ACCCATCGCACAT-ATGTGTGCACACCACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGTCGT
390 ACCCATCGCACATCA--TGTGCGCA-CA-CCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGC
*
624135 CGGTCAGGTTCTCCGGCGATG
451 CGGTCAGGTTCTCTGGCGATG
624156 CTTCGTTGAC
Statistics
Matches: 8887, Mismatches: 980, Indels: 609
0.85 0.09 0.06
Matches are distributed among these distances:
857 30 0.00
858 13 0.00
859 16 0.00
860 764 0.09
861 520 0.06
862 132 0.01
863 610 0.07
864 140 0.02
865 436 0.05
866 196 0.02
867 20 0.00
868 1 0.00
869 8 0.00
870 84 0.01
871 539 0.06
872 109 0.01
873 1 0.00
874 31 0.00
875 4 0.00
876 1 0.00
877 1 0.00
878 2 0.00
879 3 0.00
880 2 0.00
881 17 0.00
882 225 0.03
883 343 0.04
884 57 0.01
885 18 0.00
886 6 0.00
887 562 0.06
888 454 0.05
889 447 0.05
890 3 0.00
891 5 0.00
892 3 0.00
893 7 0.00
894 7 0.00
895 3 0.00
896 15 0.00
897 743 0.08
898 82 0.01
899 749 0.08
900 1356 0.15
901 74 0.01
902 8 0.00
903 6 0.00
904 5 0.00
905 1 0.00
906 5 0.00
907 4 0.00
908 2 0.00
909 8 0.00
910 1 0.00
911 2 0.00
913 4 0.00
914 1 0.00
917 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (860 bp):
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTT
TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTC
AGGTTCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATATGGCACCAGCACATGCCTGAGCCCAGC
ATGTGCACCTGCAACCCTCAATTTGGTCCGATGCTTACACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
TCGCTCGGGTCCCCCCCTACGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCTAATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCCA
Found at i:617145 original size:26 final size:26
Alignment explanation
Indices: 617116--617168 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
617106 CCAGTCCGAT
* * *
617116 CTTACACTTGGAGTGAACTCCATATG
1 CTTACACTGGGAATGAACACCATATG
* *
617142 CTTAGACTGGGAATGAACACCGTATG
1 CTTACACTGGGAATGAACACCATATG
617168 C
1 C
617169 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACACCATATG
Found at i:618901 original size:25 final size:26
Alignment explanation
Indices: 618867--618918 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
618857 CCGGTCCGAT
618867 CTTACACTGGGAATGAACTCC-TATG
1 CTTACACTGGGAATGAACTCCGTATG
*
618892 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
618918 C
1 C
618919 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:620704 original size:26 final size:26
Alignment explanation
Indices: 620665--620720 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
620655 CCTGTCTGAT
*
620665 CTTATACTGAGAATGAACTCCATAGG
1 CTTAGACTGAGAATGAACTCCATAGG
* * *
620691 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATAGG
620717 CTTA
1 CTTA
620721 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATAGG
Found at i:621591 original size:26 final size:26
Alignment explanation
Indices: 621562--621614 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
621552 CTGGTCCGAT
* *
621562 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
621588 CTTAGACTAGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCCGTATG
621614 C
1 C
621615 CGAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:622500 original size:26 final size:26
Alignment explanation
Indices: 622462--622514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
622452 CCAGTCTAAT
622462 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
622488 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
622514 C
1 C
622515 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:623387 original size:26 final size:26
Alignment explanation
Indices: 623351--623403 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
623341 CCGGTCTGAT
623351 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
623377 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
623403 C
1 C
623404 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:624299 original size:26 final size:25
Alignment explanation
Indices: 624258--624330 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 25
624248 TCATATACTG
*
624258 GGAATGAACTTTGTATGCTTAGACT
1 GGAATGAACTCTGTATGCTTAGACT
*
624283 AGGAATGAACTCCGTATGCTTAGACT
1 -GGAATGAACTCTGTATGCTTAGACT
624309 GGAAATGAACTCTGTATGCTTA
1 GG-AATGAACTCTGTATGCTTA
624331 ACTCAACCCA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 2 0.05
26 41 0.95
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (25 bp):
GGAATGAACTCTGTATGCTTAGACT
Found at i:630840 original size:26 final size:26
Alignment explanation
Indices: 630804--630856 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
630794 TTGGTTCGAT
630804 CTTACACTGGGAATGAACTCC-GTATG
1 CTTACACTGGGAATGAAC-CCTGTATG
*
630830 CTTAGACTGGGAATGAACCCTGTATG
1 CTTACACTGGGAATGAACCCTGTATG
630856 C
1 C
630857 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACCCTGTATG
Found at i:631712 original size:26 final size:26
Alignment explanation
Indices: 631683--631735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
631673 CCGGTCCGAT
*
631683 CTTACAGTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
631709 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
631735 C
1 C
631736 CTAAGTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:633487 original size:26 final size:26
Alignment explanation
Indices: 633436--633488 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
633426 CGGGTCCGAT
*
633436 CTTACACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
633462 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
633488 C
1 C
633489 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:634363 original size:26 final size:26
Alignment explanation
Indices: 634313--634365 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
634303 CTGGTCTGAT
**
634313 CTTACACTGGGAATGAACTTGGTATG
1 CTTACACTGGGAATGAACTACGTATG
*
634339 CTTAGACTGGGAATGAACTACGTATG
1 CTTACACTGGGAATGAACTACGTATG
634365 C
1 C
634366 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTACGTATG
Found at i:635717 original size:885 final size:883
Alignment explanation
Indices: 633021--643044 Score: 11951
Period size: 898 Copynumber: 11.4 Consensus size: 883
633011 ACTTTTTACG
* * *
633021 GTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTTTTTGGTATGCACAAAAAACTTCA
1 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCA
* * *
633086 GCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTACAGACACT
65 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
633151 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-ACTCTTTAAGGGGGTGTGAGTTCTCGA
130 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
633215 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
195 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
633280 GCACACCCCCCTCGCCCCCCCATTCGTCGAAACCCCAATGCCACCGGTCAGGTTCTTCGGTGACG
260 GCACACCCCCCT--CCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGG---TTC--T----
* * ** *
633345 CTCTGGCGATGGTGCCCTGGGTGAAAAAAATGCGGCACCAGCACATGCCCAAGCCTAGCATGTGC
314 C-C-GACGATGGTGCCCCGGGCAAAAAAAATGCGGCACCAGCACATGCCC-AGCCCAGCATGTGC
* * * * *
633410 ACCCAAAACCCTCGATCGGGTCCGATCTTACACTGGGAATGAAC-TCTATATGCTTAGACTGGGA
376 ACCCGAAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTTC-GTATGCTTAGACTGGGA
* * * * *
633474 ATGAACTCCGTATGCCGAAGTCAACCCACAAAACGAGCGTACGGGCGCTCA-ACTGACCAGAGGG
440 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGG
* * ** * * * ** * *
633538 GCAGGATGCACAAGCCAG-GGATC-AGTTACGTCCCCCCTGCGTGCTACCAATCCTGCTGCCGCA
504 GCAGGATGCGCAAGCC-GTGGATCGA-CTGGGTCCCCCTTACGTGCTGCTGATCTTACTGCCGCA
* * ** * *
633601 ACCCTTGGTGCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGAAGAAAC
567 ACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
633666 GAGCAGGCGTGCGGGCACTACGTCGGCCAGAAAGACGGGATGAGCAAGCCGTGGATCGATAGGGT
632 GAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
633731 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATACCATTTTTATGGCTTGTAAA
697 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAA
* * * *
633796 TTTATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGAAAGATGACTCGTTTTATATTTT
762 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
633861 TCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTTAGAAGGA
827 TCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
* * * * * *
633918 TTTTTGGCCCCACACTTGGAAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAG
1 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* * * * *
633983 GTAAAAATTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCGGACACTT
66 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
634048 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
131 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
634113 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAAGTACCAGTACCCATTGCACATCATGTGC
196 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATCATGTGC
* * *
634178 GCACA--------CCCCCCAGTCG-CTGGAACCCTAATGCCGCCGGTCAGGTTCTCTGGCGATGG
260 GCACACCCCCCTCCCCCCCAATCGTC-GGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGG
* * *
634234 TGCCCTGGGCAAAAAAAATGCGACACCAGCACATGCCCCAGCCCAGCATGTGCACCCGTAACCCT
324 TGCCCCGGGCAAAAAAAATGCGGCACCAGCACATG-CCCAGCCCAGCATGTGCACCCGAAACCCT
* * *
634299 CGGTCTGGTCTGATCTTACACTGGGAATGAACTTGGTATGCTTAGACTGGGAATGAACTACGTAT
388 CGGTCCGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
634364 GCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTC-GACCAGAGGGGCAGGATGCGCAA
453 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCAGGATGCGCAA
* * * * * * * * * *
634428 GCCGTGGATCGGCTGGGTCCCCCCCTACGTGCTACTGATCTTGCTGCTGTAGCCCTCGGTCTGAT
517 GCCGTGGATCGACTGGGT-CCCCCTTACGTGCTGCTGATCTTACTGCCGCAACCCTTGGTCCGGT
* * * * *
634493 CTAAACTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAGACGGGCGG
581 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGG
*
634558 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTA
646 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
634623 GGCACATCTTGATATTTCTACCTTGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTC
711 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
634688 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGCCGACTCGTTTTCTATTTTTCATGATTTTCAAA
776 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAA
*
634753 ACTTTTTACAGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
841 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
* * ***
634796 GTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCATATGCACAAAAAAATTCAG
1 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
634861 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCGCCATTTCAGTCACTT
66 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
634926 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAG
131 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * * *
634991 GTTTGATAAGGGATAGGGGACCAATATAAGGGCCATGTA-CAGGCACCCTTCACACATCTTGTGC
196 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-GCACCCATCGCACATCATGTGC
635055 GCACACCCCCCTCCACCCCTCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATG
260 GCACACCCCCCTCC-CCCC-CAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATG
* ** *
635120 GTACCCCGGGCAAAAAAAATGCCACACCAGCACGTGCCCATGCCCAGCATGTGCACCCGAAACCC
323 GTGCCCCGGGCAAAAAAAATGCGGCACCAGCACATGCCCA-GCCCAGCATGTGCACCCGAAACCC
* * * ** * *
635185 TTGGTCCGGTCTAATCTTACACTGGGAATGAACTTGGTATATTTAGATTGAGAATGAACTCCGTA
387 TCGGTCCGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
635250 TGCCTAAGTTAACCCATGAAACGAGCGTGCAGGCACCCAGCCAGCCAGAGGGGCAGGATGCGCAA
452 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGCAA
* * * ** * *
635315 GTCGTGGATTGACTGGATCCCCCTTACAAGCTGCTAATCTTACTGCCACAACCCTTGGTCCGGTC
517 GCCGTGGATCGACTGGGTCCCCCTTACGTGCTGCTGATCTTACTGCCGCAACCCTTGGTCCGGTC
*
635380 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGG
582 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGG
* * *
635445 CACTACGCCAGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCAATAGGGTGGTAGGTGGGTTTAG
647 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
635510 GTACATCTTTATATTTCTACCCTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCC
712 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
635574 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGCCGACTCGTTTTCTATTTTTCACGATTTTCAAAA
777 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
* *
635639 CTTTTTACAGTTCGGGATTTGTTTAAAATTTTTTCAGAAGGA
842 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
* * * **
635681 GTTTTGGACCCAAACTTGGTAGACGTGATTCTTGTATTTTTGTTCACATGCACAAAAAAATTCAG
1 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
*
635746 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGTCACTT
66 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
635811 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTTTCGAG
131 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * * *
635876 GTTTGATAAGGGATAGGGGACCAATATAAGGGCCATGTA-CAGGCACCCTTCACACATCTTGTGC
196 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-GCACCCATCGCACATCATGTGC
635940 GCACACCCCCCTCCACCCCTCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATG
260 GCACACCCCCCTCC-CCCC-CAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATG
* ** *
636005 GTACCCCGGGCAAAAAAAATGCCACACCAGCACGTGCCCATGCCCAGCATGTGCACCCGAAACCC
323 GTGCCCCGGGCAAAAAAAATGCGGCACCAGCACATGCCCA-GCCCAGCATGTGCACCCGAAACCC
* * * ** * *
636070 TTGGTCCGGTCTAATCTTACACTGGGAATGAACTTGGTATATTTAGATTGAGAATGAACTCCGTA
387 TCGGTCCGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
636135 TGCCTAAGTTAACCCATGAAACGAGCGTGCAGGCACCCAGCCAGCCAGAGGGGCAGGATGCGCAA
452 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGCAA
* * * ** * *
636200 GTCGTGGATTGACTGGATCCCCCTTACAAGCTGCTAATCTTACTGCCACAACCCTTGGTCCGGTC
517 GCCGTGGATCGACTGGGTCCCCCTTACGTGCTGCTGATCTTACTGCCGCAACCCTTGGTCCGGTC
* *
636265 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACAGGCGGG
582 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGG
* *
636330 CACTACGCCAGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
647 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
636395 GCACATCTTGATATTTCTACCTTGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCC
712 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
636460 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGCCGACTCGTTTTCTATTTTTCACGATTTTCAAAA
777 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
*
636525 CTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
842 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
* * * *
636567 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTTTTCGCATGCATAAAAAAATTCAG
1 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
636632 CTAAAAACTCGAAGTATACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
66 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
636697 TAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAG
131 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
636762 GTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAT-GCACATCATGTGT
196 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGC
* * *
636826 GCACACCCCCCACCCCCCCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTTTCGCAGCGATGC
260 GCACACCCCCCTCCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGG---T--------T-C
* * * * * * **
636891 TCCGGCGATGGTTCCCTGGGAGAAAAAAAAATGTGGCACCAGCACATGCCAAAGTGCAGCATGTG
313 TCCGACGATGGTGCCC-CGG-GCAAAAAAAATGCGGCACCAGCACATGCC-CAGCCCAGCATGTG
* * * *
636956 CACCTGCAACCCTCGGTCCGGTCTGATATTACACTGAGAATGAAC-TCTGTATGCTTAGACTGGG
375 CACCCGAAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTTC-GTATGCTTAGACTGGG
* ** * * *
637020 AATGAACTCCGTATGCCTAAGTCAACCCATGAAATTAGCGTGCCGGCGCTCAGCCGGCTAGAGGG
439 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGG
* * * * * * *
637085 GCAGGATGCGCAAGTCGGGGATCGACTAGGTCTCCCCCTACGTGCTGCCGATATTACTGCTGCAA
504 GCAGGATGCGCAAGCCGTGGATCGACTGGGTC-CCCCTTACGTGCTGCTGATCTTACTGCCGCAA
* * *
637150 CCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAGCTCTGTATGCCTAAGCCAACCGACGAAACG
568 CCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
*** * * * * * *
637215 AGTTTGCGGGCAGGCACTACGCCGGACAGAGAGGAGGGATGCACAAGCTGTAGATCGATAGGGTG
633 AGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
637280 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
698 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
637345 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTT
763 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* **
637410 CACGATTTT-GAAAAATTTTTATAGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
828 CACGATTTTCG-AAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
* * **
637466 GTTTTGGTCCCACACTCAGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
1 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
*
637531 CTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTCAGACACTT
66 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
637595 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAG
131 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
637659 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
196 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
637724 CACA-CCCCCTGCCCCCCAATCGTCGGAAATCCGAATGTCGCCAGTCAGGTTCTTCGACGATGCT
261 CACACCCCCCTCCCCCCCAATCGTCGG-AACCCTAATGCCGCCGGTCAGGTTC-TC--CGA----
* * *
637788 CCGATGATGGTGCCCCGGGTGAAAACAAAATGCGGCACCAGCACATGCCTGAGCCCAGCACGTGC
318 -C---GATGGTGCCCCGGG-CAAAA-AAAATGCGGCACCAGCACATGCC-CAGCCCAGCATGTGC
** * * ** * * *
637853 ACTTGCAACCCTTGGTTTGATCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAA
376 ACCCGAAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
* * *
637918 TGAACTCCGTATTCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCC-GACCAGAGGGG
441 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGG
* * * * * ** * * * *
637982 CAGGATGTGCAAGCTGAGGATCGGCTGGGTCCCCCCTGTGTACTGCTGATATTGCTGCCACAACC
505 CAGGATGCGCAAGCCGTGGATCGACTGGGTCCCCCTTACGTGCTGCTGATCTTACTGCCGCAACC
*
638047 CTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
570 CTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * *
638112 CGGGCGGGTGGGTACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGT
635 CAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
638177 AGGTGGGTTTAGGCACATCTTCATATTTTTGCAATGCCAATGCCATTTTTATGGCTTGTAAATTC
700 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
638242 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
765 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
638307 CGATTTTC-AAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGA
830 CGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
* *
638359 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTT-GCATGCA-AAAAAAATTCAG
1 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
638422 CTAAAAACTCGAAGTGTACA-GATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTT
66 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
638485 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
131 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
638550 GTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCG
196 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** * *
638614 CACACCCCCC-GCCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCGACGATGCTCT
261 CACACCCCCCTCCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTC--CGA------
* * *
638678 GGCGATGGTGCCCCGAGCGAAAATAAAATGCGGTACCAGCACATGCCTGAGCCCAGCATGTGCAC
318 --CGATGGTGCCCCGGGC-AAAA-AAAATGCGGCACCAGCACATGCC-CAGCCCAGCATGTGCAC
** * * *
638743 CC-ACAACCCTCAATCCGATTTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
378 CCGA-AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAAT
* * * * * *
638807 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGTGGGTGCTCAACCGGCCAAAGGGGCA
442 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCA
* * * * * * * * *
638872 AGATGCACAAGCCGGGGATCGATTGGGTCCCCCTTACGTGCTACCGATCCTGCTGCCGTAA-CCT
507 GGATGCGCAAGCCGTGGATCGACTGGGTCCCCCTTACGTGCTGCTGATCTTACTGCCGCAACCCT
** * * * * * * *
638936 TCCATCTGATCTAATCTTAGACTGGGAGTGAACTCTGTATACCTAAGCCAACCGATGAAACGAGC
572 T-GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* *
639001 GGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
636 AGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * ** * *
639066 GGTGGGTTTTGGCACATCTTCATATTTTTTTCGTGCCAATGCCGTTTTTATGGCTTGTAAATTCA
701 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
639131 TGCAATGGTCCCTGAGGCCTTCATGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCAC
766 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * * **
639196 GATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTTTAAATTTTTTCAGTTGGCA
831 GATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG-A
* * *
639250 -TTTTAGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAG
1 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
*
639314 ATAAAAACTTC-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
66 CTAAAAAC-TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
639378 TTAATGGCTA-TCGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCA
130 TTAATGGCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * *
639442 ACGTTTGATGAGGGATAGGGTGCCGATATAAGGTCCAAGTACCAGCACCCATCACACATCATGTG
194 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
639507 CACACA-CCCCCTCCGCCCCCACAATCGTCGGAA-CCTGAATGCTGTCGGTTAGGTTCTCCAACG
259 CGCACACCCCCCT-C-CCCCC-CAATCGTCGGAACCCT-AATGCCGCCGGTCAGG-T-T----C-
* * *
639570 ATGCTCAGACGATGGTGCCTCGGGCGAAAAAAAATGTGGCACCAGCACATGCCTAAGCCCAGCAT
313 -T-C-C-GACGATGGTGCCCCGGGC-AAAAAAAATGCGGCACCAGCACATGCC-CAGCCCAGCAT
* * *
639635 GTGCACCCGTAACCCTCGGTCCGGT-TCGATCTTACACTGGGAATGAACTCCGTATGATTAGACT
372 GTGCACCCGAAACCCTCGGTCCGGTCT-GATCTTACACTGGGAATGAACTTCGTATGCTTAGACT
* * *
639699 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAG-CAGGCCAG
436 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA-GCCAG
** * * * * ** * * *
639763 AGGGGCAGGATGCAAAAGCCGAGGATTG-GTCGGTCCCCCCTTGTGTGCT-ATCGATCCTACTAC
500 AGGGGCAGGATGCGCAAGCCGTGGATCGACTGGGT-CCCCCTTACGTGCTGCT-GATCTTACTGC
** ** * * *
639826 CGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGAACGAGCTCCATATGCCTAAGCCAACCGACG
563 CGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
639891 AAACGAGCGGGCGGGCGGGCACTACGCCGACTAGAGAGACGGGATGCGCAAGCCATGGATCGATA
628 AAACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* * * *
639956 GCGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGTCAATGCCATTTTTATGGCTTG
693 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
* *
640021 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAATTTTCATGGCAAGACAACTCGTTTTCTA
758 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * ** * *
640086 TTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGGAGGG
823 TTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
* * *
640147 GTTTTGGCCCCACACTTGCTAGACATGATCCTTGGTATTTTTTTTGGCATGCAC-AAAAAATTCA
1 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-GTATTTTTTTTGGCATGCACAAAAAAATTCA
* * * * * *
640211 ACTAAAAAATTGAAGTGTGCAGGATTTTGCGACCATTT-ACAAAAAGTGTCCTCATTTCAGACAC
65 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGA-AAAAAGTGTCCCCATTTCAGACAC
*
640275 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAG
129 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
** * * *
640340 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGAACACGTA-CAGGCACCCTTCGCACATCTTGT
194 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-GCACCCATCGCACATCATGT
** * * *
640404 GCATACA-CCCCCTCCGTCCCCCCAATGGTCGGAAACCC-AATGTCGTCGGTCAGGTTCTCCGAC
258 GCGCACACCCCCCT-C--CCCCCCAATCGTCGG-AACCCTAATGCCGCCGGTCAGGTTCT-C--C
* * * *
640467 GATGCTCCGATGATGGTGCTCCGGGCAAAAAAAAATGAGGCACCAGCACATGTCCGAGCCTAGCA
316 GA-----C---GATGGTGCCCCGGGC-AAAAAAAATGCGGCACCAGCACATG-CCCAGCCCAGCA
* *
640532 TGTGTACCC-ACAACCCTCGGTCTGGTCTGATCTTACACT-GG---G-A------ATG---A-AC
371 TGTGCACCCGA-AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGAC
*
640581 ------T---CT--GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAG
435 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAG
* * * * * *
640635 AGGGGCAGGATGCGCAAGCCAG-GGATCG-GTCGGGTCCCCCCTATGTGTTACTGATCTTGCTGC
500 AGGGGCAGGATGCGCAAGCC-GTGGATCGACT-GGGTCCCCCTTACGTGCTGCTGATCTTACTGC
* *** ** * *
640698 CACAACCCTCATTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCAAAGCCAACCGACG
563 CGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
640763 AAATGAGCAGGCGGGCGGGCACTACGCCGGCCGGAGAGGCTGGATGCGCAAGCCGTGGATCAATA
628 AAACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* *
640828 GGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTG
693 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
*
640893 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
758 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * * *
640958 TTTTTCATGATTTTTGAAACCTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAAGA
823 TTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
* *
641019 GTTTTGGCCCCAAACTAT-GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCA
1 GTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * * * * *
641083 GCAAAAAACTCAAAGTGTACAGGATTTTGCGACCATTTGAAAAAGGTGTTCCCATTTTAGACACT
65 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
641148 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTGT-TCA
130 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT-TCTCG
* * *
641212 AGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATATG
194 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
641277 CGCACACCCCCC-GCCCCCCAACCGTCGGAACCAC-AATGCCACCGGTCAGGTTCTCCGGCGATG
259 CGCACACCCCCCTCCCCCCCAATCGTCGGAACC-CTAATGCCGCCGGTCAGGTTCTCCGACGATG
* *
641340 GTGCCCTGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAATGTGCACCC-ACAAC
323 GTGCCCCGGGC-AAAAAAAATGCGGCACCAGCACATGCCC-AGCCCAGCATGTGCACCCGA-AAC
* * *
641404 CCTCGGACCGGTCTGATCTTACATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
385 CCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCG
* * * **
641469 TATGCCTAAGTCAACCC-CTGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAAGATGTA
450 TATGCCTAAGTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCG
* * * * * * * ***
641533 CAAGCCGAGGATCGA-TCGGGTCCCCCCTACATGTTG-TCGATCCTACTACCGTAACCCTCAATC
514 CAAGCCGTGGATCGACT-GGGTCCCCCTTACGTGCTGCT-GATCTTACTGCCGCAACCCTTGGTC
* * * * *
641596 TGGTCTGATCTTTA-ACT-GGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCA
577 CGGTCTGATC-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCG
* * * * * * * *
641659 GGCGGGCTCTATGCCGACCAGAGAGGCGAGATGCGCATGCCATGGATCGATAGGGTGGTTGGTGC
641 GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
641724 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTATGGCTTGTAAATTGATACAA
706 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
641788 TGGTCCCTTAA-CCTTCATGTGAAGTTTCCAT-GCAAGACGACTCATTTTCTAATTTTTCACGAT
771 TGGTCCCTTAAGCCTTCATGTGAAGTTT-CATGGCAAGACGACTCGTTTTCT-ATTTTTCACGAT
* * * * * *
641851 TTTTG-AACCTTTT-CGGATTTGGGGATTTGTTTAAAA--ATTGCAGAA-G-
834 TTTCGAAACTTTTTACGG--TTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
* *
641897 GTTTTGGCCCC--A-TGGGTAGACGTGAT-CTTGTATTTTTTTTGGCA-G-ACAAAAATATTCAG
1 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
*
641956 C----AACTCGAAGT-TACAGGA-TTT-TGA-CATTTTG--AAAAG-GTCCTCATTTC-G-CA-T
66 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * *
642007 TTAAT-TCTGCGGGGCAGC-AACCAGT-AAATCTCAATTTGCTCTTTAA--GGGTG-GAG-TCTC
130 TTAATGGCTAC-TGGCAGCAAACCTGTAAAATCTCAA-ATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
642065 GAGGTTTGATGA-GGATA---GGCCAATAT-A-GGCCAAGTAGCA--ACCACAT--CACA-AATG
193 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-CATCGCACATCATG
** * * * * ** *
642119 TTGCG--CA--CCCCTGTCTCGCAATC-CCGG---CCT-ATGCCACCAATCA-GTTCT-CGATGA
257 -TGCGCACACCCCCCTCCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGA
* * * *
642173 TGGTG--CCGGAGCGAAAAAAATGAGGCA-CAG-AC-TG-CGAG-CCA-AATGTGCA-CCG--A-
321 TGGTGCCCCGG-GCAAAAAAAATGCGGCACCAGCACATGCCCAGCCCAGCATGTGCACCCGAAAC
* *
642226 -CTC-ATCCGGT-TGATCTTACACT-GGAATG-AC-TCGTCATGCTTGGACTGGGAATGAACTCC
385 CCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTTCGT-ATGCTTAGACTGGGAATGAACTCC
* * * * * *
642285 GTATGCCTAAGTCAAACCACGAAACAAGTGTACGGGCGCTCAGCC-GACCAGAGGGGTAGGACGC
449 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCAGGATGC
* * * * * * * * **
642349 GTAAGCTGTGGATCGATTGGGACCCCCCTTACGTACTG-TCGATCCTACTACCGTAACCCTCAGT
513 GCAAGCCGTGGATCGACTGGG-TCCCCCTTACGTGCTGCT-GATCTTACTGCCGCAACCCTTGGT
* * *
642413 CCGGTCT-ATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGGGC
576 CCGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGC
* * * *
642477 GGGCGGGCACTACACCCGCCAGAGAGGCGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTG
640 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
642542 GGTTTAGGCACATCTTCATATTTGTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
705 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
642607 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACGATT
770 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
642672 TTCGAAACTTTTTAGGGTTTGAGATTTTTTTAAAATTTTTTCAAAAGGA
835 TTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
* * * * * *
642721 GTTTGGGCCCCAATCTTGGTAGATGTAATGCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAG
1 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
642786 CTAAAAACTTGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
66 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
642851 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAAGGGGTGTGAGTTCTTGAG
131 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
** * ** * ** *
642916 GTTTGATTCGGAATAGGGGGTGAATAGAAGGGCCAAGT-TTAGGCACCCATTGCACATCATGTGC
196 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-GCACCCATCGCACATCATGTGC
* * * * * *
642980 GCACACCCCCCTGCCCCCCAATCGCCGGAACCCCAATCCCACTGGTCAGGTTCTCCGACGATGGT
260 GCACACCCCCCTCCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGGT
643045 CCGACGATTG
Statistics
Matches: 8047, Mismatches: 831, Indels: 527
0.86 0.09 0.06
Matches are distributed among these distances:
816 4 0.00
817 95 0.01
818 55 0.01
819 145 0.02
820 74 0.01
821 43 0.01
822 8 0.00
823 2 0.00
824 10 0.00
825 2 0.00
826 8 0.00
827 14 0.00
828 19 0.00
829 2 0.00
830 16 0.00
831 2 0.00
832 3 0.00
833 16 0.00
834 11 0.00
835 15 0.00
836 8 0.00
837 19 0.00
838 3 0.00
839 5 0.00
840 10 0.00
841 8 0.00
842 9 0.00
843 14 0.00
844 20 0.00
845 17 0.00
846 8 0.00
847 6 0.00
848 24 0.00
849 5 0.00
850 9 0.00
852 6 0.00
853 8 0.00
854 20 0.00
855 6 0.00
856 8 0.00
857 19 0.00
858 102 0.01
859 16 0.00
860 2 0.00
861 15 0.00
862 13 0.00
863 5 0.00
864 2 0.00
865 8 0.00
866 14 0.00
867 12 0.00
868 23 0.00
869 34 0.00
871 20 0.00
872 604 0.08
873 20 0.00
874 20 0.00
875 11 0.00
876 4 0.00
877 213 0.03
878 536 0.07
879 3 0.00
880 10 0.00
881 43 0.01
882 70 0.01
883 136 0.02
884 147 0.02
885 885 0.11
886 578 0.07
887 233 0.03
888 492 0.06
889 43 0.01
890 211 0.03
891 80 0.01
892 36 0.00
893 84 0.01
894 125 0.02
895 330 0.04
896 335 0.04
897 213 0.03
898 1070 0.13
899 464 0.06
900 3 0.00
904 1 0.00
906 2 0.00
907 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCTCCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGGTG
CCCCGGGCAAAAAAAATGCGGCACCAGCACATGCCCAGCCCAGCATGTGCACCCGAAACCCTCGG
TCCGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCG
TGGATCGACTGGGTCCCCCTTACGTGCTGCTGATCTTACTGCCGCAACCCTTGGTCCGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACT
ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTT
TTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
Found at i:638796 original size:26 final size:26
Alignment explanation
Indices: 638767--638819 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
638757 CCGATTTGAT
638767 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
638793 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
638819 C
1 C
638820 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:646317 original size:26 final size:26
Alignment explanation
Indices: 646278--646328 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
646268 NNNNNNNNNN
* *
646278 TAGATTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
*
646304 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
646329 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.33
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:647035 original size:26 final size:26
Alignment explanation
Indices: 646997--647049 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
646987 GGCTCAAACT
646997 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
647023 CTTAGAGTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
647049 C
1 C
647050 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:647927 original size:159 final size:159
Alignment explanation
Indices: 647498--647930 Score: 419
Period size: 159 Copynumber: 2.7 Consensus size: 159
647488 AACTCTGTAT
* ** ** * *
647498 GCTTAGACATGGAATGAACTTCGTATGTGTAAGCCAACCCGTGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* ** * **
647563 CCGACCGAAGAGGCAGAATGCGCAAGTTGGGGATCGGT-TCGGTCCTCCCCTACGTGCTGTCGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGTCTCGGTCC-CCCCTACGTGCTACCGAT
* *
647627 CCTGCTACTGCAACCCTCAGTTCGATCTGA
130 CCCGCTACTGCAACCCTCAGTTCGATCGGA
* * * * * * * *
647657 TCTTAGGC-TGGGAATGAACTCCGTATACCTAAGTCAAACCACGAAATGAGCGTTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * * * ** * *
647721 GCTGACCGGAGAGGCATAATGCACAAGCCGGGGA-TCGACTCAATCCCCCTCTGCGTGCTACCGG
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGTCTCGGTCCCCC-CTACGTGCTACCGA
* *
647785 TCCCGCTAC-GACAACCCTTAGTTCCGAT-GGG
129 TCCCGCTACTG-CAACCCTCAGTT-CGATCGGA
* * * *
647816 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGGGCGTACGGTTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* *
647881 CCGACCGGAGTGGCAGAATGCGCAAGCCAGGGATTGGTCT-GGTCCCCCCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGTCTCGGTCCCCCCT
647931 GTATGCTGTC
Statistics
Matches: 214, Mismatches: 53, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
158 8 0.04
159 197 0.92
160 9 0.04
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGTCTCGGTCCCCCCTACGTGCTACCGATC
CCGCTACTGCAACCCTCAGTTCGATCGGA
Found at i:648866 original size:26 final size:26
Alignment explanation
Indices: 648825--648877 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
648815 CCGATCCGAT
*
648825 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
648851 CTTAGACTGAGG-ATGACCTCCGTATG
1 CTTAGACT-AGGAATGAACTCCGTATG
648877 C
1 C
648878 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:649345 original size:26 final size:26
Alignment explanation
Indices: 649304--649356 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
649294 CTGATCAGAT
649304 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
649330 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTAGGA-ATGAACTCCGTATG
649356 C
1 C
649357 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:649952 original size:11 final size:11
Alignment explanation
Indices: 649936--649975 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
649926 TTAGGCTCTC
649936 CGGCGATGCTT
1 CGGCGATGCTT
649947 CGGCGATGCTT
1 CGGCGATGCTT
649958 CGGC-AGTGCTT
1 CGGCGA-TGCTT
*
649969 CGACGAT
1 CGGCGAT
649976 ACTCCGATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 1 0.04
11 24 0.92
12 1 0.04
ACGTcount: A:0.12, C:0.28, G:0.35, T:0.25
Consensus pattern (11 bp):
CGGCGATGCTT
Found at i:650095 original size:26 final size:26
Alignment explanation
Indices: 650057--650109 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
650047 GGCTCAAAAT
650057 CTTAGACTGGGAATGAACACTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
**
650083 CTTAGACAT-GGAATGAACTTTGTATG
1 CTTAGAC-TGGGAATGAACACTGTATG
650109 C
1 C
650110 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACTGTATG
Found at i:650511 original size:159 final size:156
Alignment explanation
Indices: 650090--650529 Score: 375
Period size: 159 Copynumber: 2.8 Consensus size: 156
650080 ATGCTTAGAC
** * * * * *
650090 ATGGAATGAACTTTGTATGCCTAAGCCAACCAACGAAACAACCGTGCGGGCACTTAACCGGCCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGCCGACCGG
* ** ** * *
650155 AGAGGCAGAATGCACAAGTAAGGGATCGGCCTGGTCTCCCCCTACGTGCTGTCGATCCTGCTACT
66 AGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTC-CCCCCTACGTGCTACCGATCCCGCTACC
** * ** *
650220 GTAACCCTCGGTCTGATCCGATCTTAG
130 ACAACCCTCAGTCCAATCCGAGCTTAG
* * * * ** *
650247 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGG-TGTTAGGCTGAC
1 A-T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTA-GCCGAC
** * * * * * * *
650311 CAAAGAGGCATAATGTGGAAGCC-GAGGATTGGCCTGATCCCCCTTTACGTGCTACCGGTCCCGC
63 CGGAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCTGGTCCCCC-CTACGTGCTACCGATCCCGC
* *
650375 TACCACAACCCTCAGTCCAA-CTGGGGCTTAAAG
126 TACCACAACCCTCAGTCCAATC-CGAGCTT--AG
* *
650408 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTTAGCCGACCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGCCGACCGG
* * *
650473 AGAGGCAGAATGCGCAAGCCAGGGATCGG-CTCGGTCCCCACTGCGTGCTATCGATCC
66 AGAGGCAGAATGCGCAAGCCAGGGATCGGCCT-GGTCCCCCCTACGTGCTACCGATCC
650530 TACTGCCGCA
Statistics
Matches: 213, Mismatches: 59, Indels: 21
0.73 0.20 0.07
Matches are distributed among these distances:
157 1 0.00
158 25 0.12
159 179 0.84
160 5 0.02
161 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (156 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGCCGACCGG
AGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTACGTGCTACCGATCCCGCTACCA
CAACCCTCAGTCCAATCCGAGCTTAG
Found at i:650595 original size:26 final size:26
Alignment explanation
Indices: 650559--650611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
650549 CTGGCCCGAT
650559 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
650585 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
650611 C
1 C
650612 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:650978 original size:26 final size:26
Alignment explanation
Indices: 650940--650992 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
650930 CCGATCCAAT
*
650940 CTTAGACCGGGAATGAACT-TCGTATG
1 CTTAGACAGGGAATGAACTCT-GTATG
*
650966 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
650992 C
1 C
650993 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCTGTATG
Found at i:657878 original size:26 final size:26
Alignment explanation
Indices: 657827--657879 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
657817 GGCTCAAAAT
* *
657827 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACAGGGAATGAACTCCATATG
*
657853 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
657879 C
1 C
657880 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:658154 original size:159 final size:158
Alignment explanation
Indices: 657861--658348 Score: 380
Period size: 159 Copynumber: 3.1 Consensus size: 158
657851 TGCTTAGACA
* * ** *
657861 GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGA
1 GGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCAATCAGCTGGCCGAA
* * **
657926 GAGGCAGAATGCACAAGCAGGAGATCGGCCCAGTCCCCCCCTGCGTGCTGTCGATCCTGCTATTG
66 GAGGCAGAATGCACAAGCAGGAGATCGGCCCAGTCCCCCCCAGCATGCTACCGATCC-GCTATTG
657991 CAACCCTCAGTTTGGTCTGATCTTAGATT
130 CAACCCTCAGTTTGGTCTGATCTTAGATT
* * *
658020 GGGAATGAACTCCATATGCATAAGTCAACCCACGGAACGAGCGTGCGGGCAATGAGCCT-GCCGA
1 GGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCAATCAG-CTGGCCGA
* * * * *
658084 AGAGGCATAATGCGCAAGC-CGAGGATCGGCCC-GATCCCCCTCAGCATGCTACCGGTCC-C-AT
65 AGAGGCAGAATGCACAAGCAGGA-GATCGGCCCAG-TCCCCCCCAGCATGCTACCGATCCGCTAT
* * * ** *
658145 TGCCACAACCCTCAATCTAGT-TGGGGCTTAGACAT
128 TG---CAACCCTCAGTTTGGTCT-GATCTTAGA-TT
* * * * *** * * *
658180 -GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGGGCTTAACAGGCCGAA
1 GGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCAATCAGCTGGCCGAA
** * * ** ** * ** * *
658244 GAGGCAGAATGCGTAAGCCGGGGATTAGCCTGGT-CCCCCCTGCATGCTGTCGATCCTGCTGTCG
66 GAGGCAGAATGCACAAGCAGGAGATCGGCCCAGTCCCCCCCAGCATGCTACCGATCC-GCTATTG
* * * *
658308 CAACCCTCGGTCTGATCTGATCTTAGACT
130 CAACCCTCAGTTTGGTCTGATCTTAGATT
658337 GGGAATGAACTC
1 GGGAATGAACTC
658349 TGTATGCTTA
Statistics
Matches: 257, Mismatches: 56, Indels: 33
0.74 0.16 0.10
Matches are distributed among these distances:
156 4 0.02
157 2 0.01
158 52 0.20
159 191 0.74
160 6 0.02
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCAATCAGCTGGCCGAA
GAGGCAGAATGCACAAGCAGGAGATCGGCCCAGTCCCCCCCAGCATGCTACCGATCCGCTATTGC
AACCCTCAGTTTGGTCTGATCTTAGATT
Found at i:658358 original size:26 final size:26
Alignment explanation
Indices: 658329--658381 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
658319 CTGATCTGAT
*
658329 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
658355 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
658381 C
1 C
658382 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:658735 original size:26 final size:26
Alignment explanation
Indices: 658697--658749 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
658687 CCAGTCTGAT
658697 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
658723 CTTAGACAT-GGAATGAACTTTGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
658749 C
1 C
658750 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:658831 original size:368 final size:355
Alignment explanation
Indices: 658168--658834 Score: 840
Period size: 368 Copynumber: 1.8 Consensus size: 355
658158 AATCTAGTTG
* * *
658168 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGGGCTT
1 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
* *
658233 AACAGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATTAGCCTGGTCCCCCCTGCATGCTGTCGAT
66 AACAGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCTGATCCCCCCTGCATGCTGTCGAT
*
658298 CCTGCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
131 CCTGCTGTCGCAACCCTCGGTCAGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
* ** * ** *
658363 GGGGATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGA
196 GGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGACCACTCAGCCAGCCGGA
* * *
658428 GAGGCATAATGCGTAAGCCAGGGATCAATTCGGTCCCCCTCTACATGCTGTTGATCCCAATGCCG
261 GAGGCAGAATGCGTAAGCCAGGGACCAACTCGGTCCCCCTCTACATGCTGTTGATCCCAATGCCG
658493 GTCTTGCTGCCACAAACCTCAGTCCGACTA
326 GTCTTGCTGCCACAAACCTCAGTCCGACTA
** * *
658523 GGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGTGGGCGCTC
1 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
* * * * * * *
658588 AGCCGGTCGAAGAGGCAGAATGC-TCAAGTCGGGGATCGGCTTGATCCCCCCCTGCGTGCTGTCG
66 AACAGGCCGAAGAGGCAGAATGCGT-AAGCCGGGGATCAGCCTGAT-CCCCCCTGCATGCTGTCG
658652 ATCATGCTGCTGGTCCTACTATCGCAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACT
129 ATC---CTGCT-G--------TCGCAACCCTCGGT-CAGATCTGATCTTAGACTGGGAATGAACT
**
658716 -TCGTATGCTTAGACAT-GGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGA
181 CT-GTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGA
** * *
658779 CCACTCAGTTAGTCGGAGAGGCAGAATGCGTAAGCC-GATGACCAACTCGGTCCCCC
244 CCACTCAGCCAGCCGGAGAGGCAGAATGCGTAAGCCAG-GGACCAACTCGGTCCCCC
658835 CTGCGTGCTG
Statistics
Matches: 261, Mismatches: 33, Indels: 23
0.82 0.10 0.07
Matches are distributed among these distances:
354 1 0.00
355 93 0.36
356 20 0.08
359 5 0.02
360 1 0.00
367 2 0.01
368 136 0.52
369 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (355 bp):
GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
AACAGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCTGATCCCCCCTGCATGCTGTCGAT
CCTGCTGTCGCAACCCTCGGTCAGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGACCACTCAGCCAGCCGGA
GAGGCAGAATGCGTAAGCCAGGGACCAACTCGGTCCCCCTCTACATGCTGTTGATCCCAATGCCG
GTCTTGCTGCCACAAACCTCAGTCCGACTA
Found at i:659204 original size:26 final size:26
Alignment explanation
Indices: 659168--659226 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
659158 CTCAGTCCGG
659168 TCTG-ATG-TTAGACTGGGAATGAAC
1 TCTGTATGCTTAGACTGGGAATGAAC
*
659192 TCTGTATGCTTAGACTGGGGATGAAC
1 TCTGTATGCTTAGACTGGGAATGAAC
*
659218 TCCGTATGC
1 TCTGTATGC
659227 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (26 bp):
TCTGTATGCTTAGACTGGGAATGAAC
Found at i:659948 original size:26 final size:26
Alignment explanation
Indices: 659899--659948 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
659889 GGCTCAAAAT
**
659899 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
659925 CTTAGACAT-GGAATGAACACCGTA
1 CTTAGAC-TGGGAATGAACACCGTA
659949 CGCCTAAGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:660319 original size:159 final size:158
Alignment explanation
Indices: 659924--660394 Score: 421
Period size: 159 Copynumber: 3.0 Consensus size: 158
659914 AACTTCGTAT
* * * * * * *
659924 GCTTAGACATGGAATGAACACCGTACGCCTAAGCTAACCCACGAAATGAGCGTACAGGTGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* *
659989 TCGATTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGCTCCCCCCCTACGTGCTGTCGATC
66 TCGA-TGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCCTACGTACTGTCGATC
** ** * *
660054 TTGCTACCACAACCCTTGGTCCGGTTCAA
130 CCGCTACCACAACCCTCAGTCCAGCTCAA
* * * * * *
660083 TCTTAGACT-GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGTG-TTA
1 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
** ** * * * *** * *
660146 AACTGATCAAAGAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCTTTCTATGTACTGTCGG
65 GTC-GAT-GGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCCTACGTACTGTCGA
* ***
660211 TCCCGCTGCCACAACCCTCAGTCCAGCTGGG
128 TCCCGCTACCACAACCCTCAGTCCAGCTCAA
* *
660242 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGTGCTCA
* * * *
660306 GTCGACTGGAGAGGTAGAATG-AGCTAGCCGGGGATCGGCCCGAT-CCCCCCTGCGTACTGTTGA
65 GTCGA-TGGAGAGGCAGAATGCA-CAAGCCGGGGATCGGCCCGATCCCCCCCTACGTACTGTCGA
* * * *
660369 TCCTGCTGCCGCAACCCCCAGTCCAG
128 TCCCGCTACCACAACCCTCAGTCCAG
660395 TCTGATCTTA
Statistics
Matches: 240, Mismatches: 64, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
158 42 0.17
159 194 0.81
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
TCGATGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCCTACGTACTGTCGATCC
CGCTACCACAACCCTCAGTCCAGCTCAA
Found at i:660557 original size:184 final size:183
Alignment explanation
Indices: 660242--660807 Score: 535
Period size: 184 Copynumber: 3.0 Consensus size: 183
660232 TCCAGCTGGG
* *
660242 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGAT-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCACTCA
* * * * * *
660306 G-TCGACTGGAGAGGTAGAATG-AGCTAGCCGGGGATCGGCCCGATCCCCCCTGCGTACTGTTGA
64 GCT-GACCGGAGAGGTAGAATGCA-CAAGCTGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGA
* * *
660369 TCCTGCTGCCGCAACCCCCAGTCCAGTCTGATCTTAGACTGAGAATGAACTTCATAT
127 TCCTGCTGCCGCAACCCCCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
* * * *
660426 GCTTAGATTGGGGATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCAATCAG
1 GCTTAGATT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
660491 CTGACCGAAGAGGCAGAATGCACAAGTTGAGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
65 CTGACCGGAGAGGTAGAATGCACAAGCTGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
660556 TGCTGTTGGTCCTGCTACCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATA
130 TGC---T-G-CC-GCAACC----CCC-AG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCATA
660621 T
183 T
* * * * * *
660622 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTACGGGCACTCAA
1 GCTTAGA-TTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** * ** * * * *
660687 CCGGTCGGAGAGGTAGAATCCGTAAGCTGAGGACCGGCCTGGTCCCCCCTGCGTGCTATCGATCC
65 CTGACCGGAGAGGTAGAATGCACAAGCTGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* *** * *
660752 TGCTCCCGCAACCCTTGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTAT
130 TGCTGCCGCAACCCCCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
660806 GC
1 GC
660808 CTAAGTCAAC
Statistics
Matches: 307, Mismatches: 58, Indels: 34
0.77 0.15 0.09
Matches are distributed among these distances:
183 1 0.00
184 142 0.46
185 4 0.01
186 1 0.00
187 1 0.00
188 1 0.00
189 2 0.01
190 10 0.03
191 2 0.01
193 1 0.00
194 3 0.01
195 1 0.00
196 137 0.45
197 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (183 bp):
GCTTAGATTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
TGACCGGAGAGGTAGAATGCACAAGCTGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCCCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
Found at i:660635 original size:26 final size:26
Alignment explanation
Indices: 660597--660649 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
660587 CTGGTCTGAT
660597 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
660623 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
660649 C
1 C
660650 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:660735 original size:196 final size:196
Alignment explanation
Indices: 660394--660755 Score: 456
Period size: 196 Copynumber: 1.8 Consensus size: 196
660384 CCCCAGTCCA
* * *
660394 GTCTGATCTTAGACTGAGAATGAACTTCATATGCTTAGATTGGGGATGAACTCCATATACCTAAG
1 GTCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCATATACCTAAG
* * * * * * *
660459 TCAACCCACGAAACGAGCGTGCGGGCAATCAGCTGACCGAAGAGGCAGAATGCACAAGTTGAGGA
66 CCAACCCACAAAACGAGCGTACGGGCAATCAACCGACCGAAGAGGCAGAATCCACAAGCTGAGGA
* *
660524 TCGACCCGATCCCCCCTACGTGCTGCCGATCCTGCTGTTGGTCCTGCTACCGTAACCCTCGATCT
131 CCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTGTTGGTCCTGCTACCGTAACCCTCGATCT
660589 G
196 G
* * *
660590 GTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAA
1 GTCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGA-ATGGGAATGAACTCCATATACCTAA
* * ** * * **
660654 GCCAACCCACAAAACGAGTGTACGGGCACTCAACCGGTCGGAGAGGTAGAATCCGTAAGCTGAGG
65 GCCAACCCACAAAACGAGCGTACGGGCAATCAACCGACCGAAGAGGCAGAATCCACAAGCTGAGG
* * * * *
660719 ACCGGCCTGGTCCCCCCTGCGTGCTATCGATCCTGCT
130 ACCGACCCGATCCCCCCTACGTGCTACCGATCCTGCT
660756 CCCGCAACCC
Statistics
Matches: 137, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
196 136 0.99
197 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (196 bp):
GTCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCATATACCTAAG
CCAACCCACAAAACGAGCGTACGGGCAATCAACCGACCGAAGAGGCAGAATCCACAAGCTGAGGA
CCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTGTTGGTCCTGCTACCGTAACCCTCGATCT
G
Found at i:661135 original size:26 final size:26
Alignment explanation
Indices: 661099--661151 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
661089 CTGGTCTGAT
661099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
661125 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
661151 C
1 C
661152 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:661235 original size:698 final size:681
Alignment explanation
Indices: 659897--661889 Score: 2249
Period size: 698 Copynumber: 2.9 Consensus size: 681
659887 GTGGCTCAAA
* * *
659897 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACACCGTACGCCTAAGCTAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
659962 CCACGAAATGAGCGTACAGGTGCTCAGTCGATTGGAGAGGCAGAATGCACAAGCCGGGGATCGGC
66 CCACGAAACGAGCGTAC-GGTACTCAGCCGATCGGAGAGGCAGAATGCATAAGCTGGGGACCGGC
* * * *
660027 CCGCTCCCCCCCTACGTGCTGTCGATCTTGCTACCACAACCCTTGGTCCGGTTCAATCTTAGACT
130 CCGGT-CCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTTCAATCTTAGACT
* * * * * * **
660092 GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGTGTTAAACTGATCAAA
194 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGTTGAGCCGATCGGA
* * *
660157 GAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCT-TTCTATGTACTGTCGGTCCCGCTGCC
259 GAGGCATAATGCACAAGTCGAGGATCGACTCGATCCCTCTGC-ATG--CTGTCGGTCCCGCTGCC
* * *
660221 ACAACCCTCAGTCCAGCTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
321 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * *
660286 AACGGACGTGCGGGCGCTCAGTCGACTGGAGAGGTAGAATG-AGCTAGCCGGGGATCGGCCCGAT
386 AACGGA-GTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCA-CAAGCCGGGGATCAGCCCGAT
* * * * * *
660350 CCCCCCTGCGTACTGTTGATCCTGCTGCCGCAACCC-CCAGTCCAGTCTGATCTTAGACTGAGAA
449 CCCCCCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAA
* * * *
660414 TGAACTTCATATGCTTAGATTGGGGATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGT
513 TGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
*** * * * **
660479 GCGGGCAATCAGCTGACCGAAGAGGCAGAATGCACAAGTTGAGGATCGACCCGATCCCCCCTACG
578 GCGGGTGCTCAGCCGGCCGAAGAGGCAGAAAGCACAAGCAGAGGATCGACCCGAT--CCCC--C-
* * * *
660544 TGCTGCCGATCCTGCTGTTGGTCCTGCTACCGTAACCCTC-GAT-CTGGTCTG
638 --CTG-CG----TGCTGTTGATCCTACTACCGTAACCCTCAG-TCCAGTTC-G
* *
660595 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * *
660660 CCACAAAACGAGTGTACGGGCACTCAACCGGTCGGAGAGGTAGAATCCGTAAGCTGAGGACCGGC
66 CCACGAAACGAGCGTAC-GGTACTCAGCCGATCGGAGAGGCAGAATGCATAAGCTGGGGACCGGC
* * * **
660725 CTGGTCCCCCCTGCGTGCTATCGATCCTGCTCCCGCAACCCTTGGTCCGGTTTGATCTTAGACTG
130 CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTTCAATCTTAGACTG
* **
660790 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGTGGGCACTGAGCCGATCGGAG
195 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGTTGAGCCGATCGGAG
*
660855 AGGCATAATGCACAAGTCGAGGATCGACTCGGTTCTCCTCTGCATGCTGTCGGGTCCCGCTGCCA
260 AGGCATAATGCACAAGTCGAGGATCGACTC-GATC-CCTCTGCATGCTGTC-GGTCCCGCTGCCA
*
660920 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAA
322 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * *
660985 ACGGATGTGCGGACGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCC
387 ACGGA-GTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCC
* * * *
661050 CCCCTGCATGCTGCCGATCCTGCTGTCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGA
451 CCCCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGA
* * *
661115 ACTCCGTATGCTTAGGCTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
516 ACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* ** * * ** * *
661180 GGTGCTCAACCGGTTGGAGAGGTAGAAAGCGTAAGCCAGA-GATCGATCTGATCCCCCCTGCGTG
581 GGTGCTCAGCCGGCCGAAGAGGCAGAAAGCACAAG-CAGAGGATCGACCCGATCCCCCCTGCGTG
**
661244 CTGTTGATCCTACTGTCGTAACCCTCAGTCCAGTTCG
645 CTGTTGATCCTACTACCGTAACCCTCAGTCCAGTTCG
* * * * * *
661281 ATCTTTGACTGGGAATGAACTTCGCATGCTTAAACATGGAATGAACTCCATGTGCCTAAACCAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
661346 CCACGAAACAAGCGTGCTGTAGCTCAGCCGACCGGAGAGGCAAAATGCTTAAG-TCGGGGACCGG
66 CCACGAAACGAGCGTACGGTA-CTCAGCCGATCGGAGAGGCAGAATGCATAAGCT-GGGGACCGG
* * * * ** * * *
661410 CCCGGTCCCCCCTGCATGCTGTAGATCCTGTTGCCGCAACCCTCAGTCTGATCCAATCTTAGACT
129 CCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTTCAATCTTAGACT
* * * *
661475 GGGAATGAACTCCATATGCCTAAGTCAAACCACGAAACGAACGTGCGGGCGTTGAGCCGGTCGGA
194 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGTTGAGCCGATCGGA
** * ** ** * *
661540 GAGGTGTAATGCACAAGTCGGGGATCGGTTCGATCCCCTTCTGTGTGCTGTCGATCCCGCTGCGA
259 GAGGCATAATGCACAAGTCGAGGATCGACTCGAT-CCC-TCTGCATGCTGTCGGTCCCGCTGCCA
* * * * * **
661605 CAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCTATAAA
322 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * * *
661670 ACAGGCA-TGCGGGCGCTCAGTCGATCGAAGAGGCAAAATGCACAAGTCGGGGAT-TGACCCGGT
387 AC-GG-AGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAG-CCCGAT
* * * *
661733 CTCCCCTACGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAAT
449 CCCCCCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAAT
* *
661798 GAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTATGTCAACCAACGAAACGAGCGTG
514 GAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
*
661863 CGGGTGCTCAGCCGGCCAAAGAGGCAG
579 CGGGTGCTCAGCCGGCCGAAGAGGCAG
661890 GATGCGCAAG
Statistics
Matches: 1091, Mismatches: 188, Indels: 45
0.82 0.14 0.03
Matches are distributed among these distances:
684 1 0.00
685 259 0.24
686 278 0.25
687 6 0.01
690 2 0.00
691 3 0.00
694 1 0.00
696 4 0.00
697 140 0.13
698 384 0.35
699 11 0.01
700 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (681 bp):
ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTACGGTACTCAGCCGATCGGAGAGGCAGAATGCATAAGCTGGGGACCGGCC
CGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTTCAATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGTTGAGCCGATCGGAGA
GGCATAATGCACAAGTCGAGGATCGACTCGATCCCTCTGCATGCTGTCGGTCCCGCTGCCACAAC
CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
AGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCT
GCGTGCTGTCGATCCTGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTC
GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
TCAGCCGGCCGAAGAGGCAGAAAGCACAAGCAGAGGATCGACCCGATCCCCCCTGCGTGCTGTTG
ATCCTACTACCGTAACCCTCAGTCCAGTTCG
Found at i:661385 original size:184 final size:182
Alignment explanation
Indices: 660940--661487 Score: 473
Period size: 184 Copynumber: 3.0 Consensus size: 182
660930 TCCGGCTGGG
* * * * *
660940 GCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACGGATGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAG-CGTGCGTA-GCTCAG
*
661005 CCGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCTGCCGATCC
64 CCGGCCGGAGAGGCAGAAAGCACAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCTGCCGATCC
* * *
661070 TGCTGTCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
129 TACTGTCGTAACCCTCGATCAGGTCTGATCTTAGACTGGGAATGAACTCCGCAT
* * * * *
661124 GCTTAGGC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGT-GCTC
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-AGCGTGC--GTAGCTC
* ** * ** * * * **
661187 AACCGGTTGGAGAGGTAGAAAGCGTAAGCC-AGAGATC-GATCTGATCCCCCCTGCGTGCTGTTG
62 AGCCGGCCGGAGAGGCAGAAAGCACAAGCCGAG-GATCAG-CCCGATCCCCCCTGCATGCTGCCG
* * *
661250 ATCCTACTGTCGTAACCCTC-AGTCCAGTTC-GATCTTTGACTGGGAATGAACTTCGCAT
125 ATCCTACTGTCGTAACCCTCGA-T-CAGGTCTGATCTTAGACTGGGAATGAACTCCGCAT
* * *
661308 GCTTAAACATGGAATGAACTCCATGTGCCTAAACCAACCCACGAAACAAGCGTGCTGTAGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-AGCGTGC-GTAGCTCAG
* ** * * * * * **
661373 CCGACCGGAGAGGCA-AAATGCTTAAGTCGGGGACCGGCCCGGTCCCCCCTGCATGCTGTAGATC
64 CCGGCCGGAGAGGCAGAAA-GCACAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCTGCCGATC
** * * * * **
661437 CTGTTGCCGCAACCCTC-AGTCTGATCCAATCTTAGACTGGGAATGAACTCC
128 CTACTGTCGTAACCCTCGA-TCAGGTCTGATCTTAGACTGGGAATGAACTCC
661488 ATATGCCTAA
Statistics
Matches: 290, Mismatches: 60, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
183 14 0.05
184 267 0.92
185 8 0.03
186 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGCGTGCGTAGCTCAGCC
GGCCGGAGAGGCAGAAAGCACAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCTA
CTGTCGTAACCCTCGATCAGGTCTGATCTTAGACTGGGAATGAACTCCGCAT
Found at i:661825 original size:26 final size:26
Alignment explanation
Indices: 661784--661836 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
661774 CCGGTCTGAT
*
661784 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
661810 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
661836 C
1 C
661837 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:662555 original size:26 final size:26
Alignment explanation
Indices: 662517--662569 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
662507 GGCTCAAAAT
662517 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
662543 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
662569 C
1 C
662570 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:663602 original size:26 final size:26
Alignment explanation
Indices: 663573--663625 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
663563 CTGATTCGAT
*
663573 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
663599 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
663625 C
1 C
663626 CTAAGTTGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:664332 original size:26 final size:26
Alignment explanation
Indices: 664294--664346 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
664284 GGCTCAAACT
664294 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
664320 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
664346 C
1 C
664347 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:665152 original size:159 final size:158
Alignment explanation
Indices: 664851--665353 Score: 521
Period size: 159 Copynumber: 3.2 Consensus size: 158
664841 TCTTCGTATG
* * * * * *
664851 CTTAGACAT-GGAATGAACAT-TGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACTCA
1 CTTAGAC-TGGGAATGAAC-TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGACACTCA
* * * *
664914 GTC-GTCCGGAGAGGCAGAATGCGTAAGCCGAGGACCGGCCCAAACCCCCCCTGCGTGCTGTCGA
64 GACAGT-CGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCC-AATCCCCCCTGCGTGCTGTCGA
*
664978 TCTTGCTACCGCAACCCTCGGTCCGATCCGAT
127 TCCTGCTACCGCAACCCTCGGTCCGATCCGAT
* * * ** * *
665010 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAACGAGCGTTCAGATGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGACACTCAGA
* * * * *
665075 CAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCTATCCACCTCTGCGTGCTGCCGATCC
66 CAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCC-CCCCTGCGTGCTGTCGATCC
* * * * * ** *
665140 CGTTACCACAACCCTCTGTTCGACTGGGGT
130 TGCTACCGCAACCCTCGGTCCGA-TCCGAT
* * * * * *
665170 -TTTGAAAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 CTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGACACTCAG
* * *
665233 ACGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCC
65 ACAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTGCGTGCTGTCGATCC
* *
665298 TACTATCGCAACCCTCGGTCCGATCCGAT
130 TGCTACCGCAACCCTCGGTCCGATCCGAT
*
665327 CATAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
665354 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 63, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 57 0.21
159 204 0.75
160 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGACACTCAGA
CAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCGGTCCGATCCGAT
Found at i:665358 original size:26 final size:26
Alignment explanation
Indices: 665329--665379 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
665319 GATCCGATCA
*
665329 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
665355 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
665380 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:665979 original size:159 final size:158
Alignment explanation
Indices: 665657--666178 Score: 333
Period size: 158 Copynumber: 3.3 Consensus size: 158
665647 CCTGTTGTTG
* *
665657 CAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
1 CAACCCTCAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
* ** * ** * *
665722 ATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGTGCAAGTTGGGGACCGACCTGGTCC
66 ATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCACAATGTGCAAGCCGAGGACCGACCTGATCC
** ** *
665787 CCCCTACGTGCTGTCGATCCTCCTGCCG
131 CCCCTACAAGCTACCGATCCTCCTGCCA
* * * * * * *
665815 TAACCCTTAGTCCGGTTCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAATCCCACAA
1 CAACCCTCAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA-CCCACAA
* * * ** *
665880 AATGAGCGTGCGGGTGCTGAGCCTACCGGAGAGGCACAATGTGCAAGCCGAGGATTG-GCTCGAT
65 AATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCACAATGTGCAAGCCGAGGACCGACCT-GAT
* * *
665944 CCCTCTCTACAAGCTACCGGTCC-GCTGCCA
129 CCC-CCCTACAAGCTACCGATCCTCCTGCCA
* * **** * * * **
665974 CAACCCTCTGTCC-GACTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAACCCAAACCATG
1 CAACCCTCAGTCCAGTC-CAATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACA
* * * * * ** * * ** *
666037 AAACGGGCGTACGGGCGTTCAGTCGGTCGGAGAGGTAGAATACGCAAGCCGAGGATC-AGCCTCG
64 AAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCACAATGTGCAAGCCGAGGACCGA-CCT-G
* * * ** * *
666101 -TCCCCCCTGCACGCTATCGATCCTGTTGTCG
127 ATCCCCCCTACAAGCTACCGATCCTCCTGCCA
* *
666132 CAA-CCT-ATGGT-CTGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCA--GTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGC
666179 TTAGACTGAG
Statistics
Matches: 274, Mismatches: 78, Indels: 25
0.73 0.21 0.07
Matches are distributed among these distances:
157 42 0.15
158 113 0.41
159 106 0.39
160 13 0.05
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
CAACCCTCAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
ATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCACAATGTGCAAGCCGAGGACCGACCTGATCC
CCCCTACAAGCTACCGATCCTCCTGCCA
Found at i:666193 original size:26 final size:26
Alignment explanation
Indices: 666152--666204 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
666142 TCTGTCCAAT
666152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
666178 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
666204 C
1 C
666205 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:667017 original size:26 final size:26
Alignment explanation
Indices: 666988--667037 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
666978 CTGGTCCGAT
666988 CTTAGAC-TAGGAATGAACTCCGTAAG
1 CTTAGACATA-GAATGAACTCCGTAAG
*
667014 CTTAGACATATAATGAACTCCGTA
1 CTTAGACATAGAATGAACTCCGTA
667038 TGTCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTAAG
Found at i:667387 original size:27 final size:26
Alignment explanation
Indices: 667330--667387 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
667320 TCCAATTCGA
667330 TCTTAGACTGGGAATGAACTCTGTAT
1 TCTTAGACTGGGAATGAACTCTGTAT
* *
667356 ACTTAGACTGGGGGATGAACTAC-GTAT
1 TCTTAGACT-GGGAATGAACT-CTGTAT
667383 TCTTA
1 TCTTA
667388 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 8 0.30
27 18 0.67
28 1 0.04
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCTGTAT
Found at i:667570 original size:26 final size:26
Alignment explanation
Indices: 667541--667593 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
667531 CCGGTCTGAT
*
667541 CTTAGAC-TAGGAATCAACTCCGTATG
1 CTTAGACAT-GGAATCAAATCCGTATG
*
667567 CTTAGACATGGAATGAAATCCGTATG
1 CTTAGACATGGAATCAAATCCGTATG
667593 C
1 C
667594 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATCAAATCCGTATG
Found at i:667802 original size:128 final size:128
Alignment explanation
Indices: 667566--667808 Score: 335
Period size: 128 Copynumber: 1.9 Consensus size: 128
667556 AACTCCGTAT
* *
667566 GCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTACTCAG
1 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGTACTCAG
* ** * * *
667631 TCGATCGGAGAGGCATAATACACAAGCCGGGGATCGTCTCGATCCCCCCTCTTTTCGGCTGGG
66 TCGACCAAAGAGGCAGAATACACAAGCCGGGGATCGACCCGATCCCCCCTCTTTTCGGCTGGG
* * * *
667694 GCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGT-ACGGGTGCTCA
1 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGA-GGGTACTCA
** *
667758 GTCGACCAAAGAGGCAGAATACGTAAGCCGGGGATTGACCCGATCCCCCCT
65 GTCGACCAAAGAGGCAGAATACACAAGCCGGGGATCGACCCGATCCCCCCT
667809 ACGTGCTATC
Statistics
Matches: 99, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
127 1 0.01
128 98 0.99
ACGTcount: A:0.27, C:0.28, G:0.26, T:0.19
Consensus pattern (128 bp):
GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGTACTCAG
TCGACCAAAGAGGCAGAATACACAAGCCGGGGATCGACCCGATCCCCCCTCTTTTCGGCTGGG
Found at i:667889 original size:26 final size:26
Alignment explanation
Indices: 667853--667905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
667843 TCAGTTTGAT
667853 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
667879 CTTAGACTGGGGATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
667905 C
1 C
667906 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:668100 original size:26 final size:26
Alignment explanation
Indices: 668062--668114 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
668052 CCAATTGAAT
*
668062 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
668088 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
668114 C
1 C
668115 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:668162 original size:521 final size:522
Alignment explanation
Indices: 667165--668164 Score: 1298
Period size: 521 Copynumber: 1.9 Consensus size: 522
667155 CCCTCGGTCT
*
667165 GGCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACAAAACGGTCATACGGG
1 GGCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACAAAACGGGCATACGGG
**** * * * ** *
667230 TGCTCAGCCGATTGGAGAGACAGAATGATCAAGCTGGGGATCAGCTCGATCTCCTTTGCGTGCTA
66 TGCTCAGCCGACCAAAGAGACAGAATGATCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTA
* * *
667295 TCGATCCTGCTGCCACAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAACTCTGTATACTT
131 TCAATCCTGCTACCACAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAACTCCGTATACTT
* ** * * * *
667360 AGACTGGGGGATGAACTACGTATTCTTAAGTCAACCCATAAAACGAGCGTATGGGTGCTCTTCCA
196 AGACTGGGGGATGAACTACGTATGCCCAAGTCAACCAACAAAACGAACGTATGGGTGCTCGTCCA
*
667425 GCTGGACAGGCCGGTCGGAGAGGCAAAATGCAAAAGTTGGGGATCGACCTAGTCCCCCCTGCATG
261 GCTGGACAGGCCGCTCGGAGAGGCAAAATGCAAAAGTTGGGGATCGACCTAGTCCCCCCTGCATG
* * * **
667490 CTGCTGATCCTGCTGCTGGTCCTACTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAAT
326 CTACCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCGATCCAATCTGATCTTAGACTAGGAAT
667555 CAACTCCGTATGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAATGAGCGTG
391 CAACTCCGTATGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAATGAGCGTG
* *
667620 AGGGTACTCAGTCGATCGGAGAGGCATAATACACAAGCCGGGGATCGTCTCGATCCCCCCTCTTT
456 AGGGCACTCAGCCGATCGGAGAGGCATAATACACAAGCCGGGGATCGTCTCGATCCCCCCTCTTT
667685 TC
521 TC
* * * *
667687 GGCTGGGGCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGG
1 GGCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACAAAACGGGCATACGGG
* * *
667752 TGCTCAGTCGACCAAAGAGGCAGAAT-A-CGTAAGCCGGGGAT-TGACCCGATCCCCCCTACGTG
66 TGCTCAGCCGACCAAAGAGACAGAATGATC--AAGCCGGGGATCAG-CCCGATCCCCCCTACGTG
* * * * * *
667814 CTATCAATCTTGCTACCGCAACCCTCGGTTCAGTTTGATCTTAGACTGGGAATGAACTCCGTATG
128 CTATCAATCCTGCTACCACAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAACTCCGTATA
* * * *
667879 CTTAGACT-GGGGATGGACTCCGTATGCCCAAGTCAACCAACGAAACGAACGTGTGGGTGCTCAG
193 CTTAGACTGGGGGATGAACTACGTATGCCCAAGTCAACCAACAAAACGAACGTATGGGTGCTC-G
* * * * * *
667943 TCGATC-GGAGAGGCCAGCT-GGAGAGGCAGAATGCAAAAGTTGGGGATCG-GCTCGGTCCCCCC
257 TCCAGCTGGACAGGCC-GCTCGGAGAGGCAAAATGCAAAAGTTGGGGATCGACCT-AGTCCCCCC
* ** * *
668005 TGCATGCTACCGATCTTGCTGCTGGTCCTGTTGTTGCAACCCTCGATCCAAT-TGAATCTTAGAC
320 TGCATGCTACCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCGATCCAATCTG-ATCTTAGAC
* * * * *
668069 TGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAT
384 TAGGAATCAACTCCGTATGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAAT
*
668134 GAGCGTGCGGGCACTCAGCC-AGTCGGAGAGG
449 GAGCGTGAGGGCACTCAGCCGA-TCGGAGAGG
668165 TAGAATGTGC
Statistics
Matches: 407, Mismatches: 63, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
520 6 0.01
521 228 0.56
522 173 0.43
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (522 bp):
GGCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACAAAACGGGCATACGGG
TGCTCAGCCGACCAAAGAGACAGAATGATCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTA
TCAATCCTGCTACCACAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAACTCCGTATACTT
AGACTGGGGGATGAACTACGTATGCCCAAGTCAACCAACAAAACGAACGTATGGGTGCTCGTCCA
GCTGGACAGGCCGCTCGGAGAGGCAAAATGCAAAAGTTGGGGATCGACCTAGTCCCCCCTGCATG
CTACCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCGATCCAATCTGATCTTAGACTAGGAAT
CAACTCCGTATGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAATGAGCGTG
AGGGCACTCAGCCGATCGGAGAGGCATAATACACAAGCCGGGGATCGTCTCGATCCCCCCTCTTT
TC
Found at i:668442 original size:159 final size:158
Alignment explanation
Indices: 668087--668467 Score: 399
Period size: 158 Copynumber: 2.4 Consensus size: 158
668077 AACTCTGTAT
** *
668087 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGACACTCAG
* * ** *
668152 CCAGTCGGAGAGGTAGAATGTGCAAGCCAAGGACTGACCCGATCCCCCCTACGTGCTGTCGATGC
66 CCAGTCGAAGAGGGAGAATGCACAAGCCAAGGACTGACCCGATCCCCCCTACGTGCTGTCGATAC
** * * *
668217 TGCTGCCGCAACCCTCGGTTCGGTCTGA
131 CACTACCACAACCCTCGGTCCGGTCTGA
* * ** * ** ** *
668245 TCTTAAAC-TAGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACAAGCGTTTGGATGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGACACTCA
* * * ** * *
668309 GCCAGTCGAAGAGGGATAATGCACAAGTC-GGGGTTCGACCCGATCCCCCTCTGCGTGCTGTCGG
65 GCCAGTCGAAGAGGGAGAATGCACAAGCCAAGGACT-GACCCGATCCCCC-CTACGTGCTGTCGA
668373 TACCACTACCACAACCCTCGGTCCGG-CTGA
128 TACCACTACCACAACCCTCGGTCCGGTCTGA
* ** *
668403 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGACACTCA
668468 ATCGATTGGA
Statistics
Matches: 174, Mismatches: 44, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
157 4 0.02
158 89 0.51
159 80 0.46
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGACACTCAG
CCAGTCGAAGAGGGAGAATGCACAAGCCAAGGACTGACCCGATCCCCCCTACGTGCTGTCGATAC
CACTACCACAACCCTCGGTCCGGTCTGA
Found at i:668724 original size:12 final size:12
Alignment explanation
Indices: 668707--668736 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
668697 CCCCTCTACG
668707 TGCTGCCGATCC
1 TGCTGCCGATCC
*
668719 TGCTGCCGGTCC
1 TGCTGCCGATCC
668731 TGCTGC
1 TGCTGC
668737 TACAACCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.40, G:0.30, T:0.27
Consensus pattern (12 bp):
TGCTGCCGATCC
Found at i:668968 original size:26 final size:26
Alignment explanation
Indices: 668939--669008 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
668929 TCTTAGACTG
*
668939 GGAATGAACTTCGTATGCTTAGATAT
1 GGAATGAACTCCGTATGCTTAGATAT
668965 GGAATGAACTCCGTATGCTTAGATAT
1 GGAATGAACTCCGTATGCTTAGATAT
668991 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
669009 CTAAGCCAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGATAT
Found at i:669338 original size:159 final size:157
Alignment explanation
Indices: 668982--669383 Score: 387
Period size: 159 Copynumber: 2.5 Consensus size: 157
668972 ACTCCGTATG
* * * **
668982 CTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTTTGC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* ** * * * * * **
669047 TGGCTGGAGAGGCAGAATGCACAAGCCGGGGACTGGTCCGGTCCCCCCTGCATGCTGTCGATCTT
65 CGGCCAGAGAGGCAGAATGCACAAGCCGGGGACTAGCCCGATCCCCCCAGCATGCTGCCGATCCC
* *
669112 GTTACCGCAACCCTCGATCCAGTCCAAT
130 GCTACCACAACCCTCGATCCAGTCCAAT
* * *
669140 CTTA-AATTGGTAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
1 CTTAGAA-TGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
669204 CCGGCCAGAGAGGCATATTGCGCAAGCCGGGGA-TCAGCCCGATCCCCCTCAGCGTGCTGCCGAT
64 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGACT-AGCCCGATCCCCC-CAGCATGCTGCCGAT
* * * ***
669268 CCCGCTGCCACAACTCTCGGTCCAGCTGGGA-
127 CCCGCTACCACAACCCTCGATCCAG-TCCAAT
* * * * * *
669299 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACGGGCATGTGGGTGCTCAGT
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
*
669364 CGGCCAGAAAGGCAGAATGC
65 CGGCCAGAGAGGCAGAATGC
669384 GTAAGTTCGA
Statistics
Matches: 196, Mismatches: 41, Indels: 13
0.78 0.16 0.05
Matches are distributed among these distances:
156 1 0.01
157 5 0.03
158 87 0.44
159 96 0.49
160 6 0.03
161 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
GGCCAGAGAGGCAGAATGCACAAGCCGGGGACTAGCCCGATCCCCCCAGCATGCTGCCGATCCCG
CTACCACAACCCTCGATCCAGTCCAAT
Found at i:670208 original size:26 final size:26
Alignment explanation
Indices: 670179--670231 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
670169 GGCTCAAACT
670179 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
670205 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
670231 C
1 C
670232 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:670434 original size:26 final size:26
Alignment explanation
Indices: 670398--670450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
670388 TCGGTACGAT
670398 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
670424 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
670450 C
1 C
670451 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:671109 original size:26 final size:26
Alignment explanation
Indices: 671080--671132 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
671070 CCGATTCAAT
671080 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
671106 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
671132 C
1 C
671133 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:671982 original size:26 final size:26
Alignment explanation
Indices: 671944--671996 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
671934 GGCTCAAAAT
**
671944 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
*
671970 CTTAGACACGGAATGAACTCTGTATG
1 CTTAGACACGGAATGAACTCCGTATG
671996 C
1 C
671997 CAAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:672842 original size:26 final size:26
Alignment explanation
Indices: 672813--672865 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
672803 CCGATCTAAT
672813 CTTAGACCCGGAATGAACTCCGTATG
1 CTTAGACCCGGAATGAACTCCGTATG
** *
672839 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACCCGGAATGAACTCCGTATG
672865 C
1 C
672866 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCCGGAATGAACTCCGTATG
Found at i:673110 original size:354 final size:357
Alignment explanation
Indices: 672247--673245 Score: 1061
Period size: 354 Copynumber: 2.8 Consensus size: 357
672237 CCCCTCTGCG
* * * * * *
672247 TGCTGTCGGTCCCGCTGCCACAACCCTCAGTCTGGTTGGGGTTTAGACATGGAATGAACTCCCTA
1 TGCTGTCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATA
* * *
672312 TGCCTAAGCCAACCCATGAAACGGGTGCGCGGGCGCTCAGCCAGTCGAAGAGGCAGAATGCGTAA
66 TGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCGA-TCGAAGAGGCAGAAT-CGTAA
** * * * * * *
672377 GCT-AGGGATCAGCCCGGTCCCCCCAGTGTGCTGCTGATCTTGC-AGCCGTAACCCTCGGTCCGG
129 ATTGA-GGATCGGCCCGAT-CCCCCTGCGTGCTGC-GATCCTGCTA--CGTAACCCTCGGTCCGA
* * * * *
672440 TTTGATCTTAGACTGGGAATGAACTTCGTATGCTTGGACTGAGGATGAACTCTGTATGCCTAAGT
189 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* * * **
672505 CAACCCACGAAATGAGCGTGCGGACGCTCAGCGGATCAGAGAGGTCGGTCAGAGAGGCATAATGC
254 CAACCCATGAAACGAGCGTGCGGA-GCT-AGC-G-TCA-AGAGCTCGACCAGAGAGGCATAATGC
** * *
672570 GTAAGTCGGGGATTAGCCCGGCCCTCCTCTGCGTGCTGTCGATC
314 ACAAGCCGGGGATCAGCCCGGCCCTCCTCTGCGTGCTGTCGATC
* * * * * *
672614 TCGTTGCCAGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGAACTTCGT
1 T-GCTGTCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCAT
* * *
672679 ATGCCTAATCCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAAT-GTAC
65 ATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG-CGATCGAAGAGGCAGAATCGT--
* * * * * *
672743 AAATCGGGGATCGGCCCGATCCTCCCTGGGTACTGTCGATCCTGCTACGCAACCCTCGATCCGAT
127 AAATTGAGGATCGGCCCGATCC-CCCTGCGTGCTG-CGATCCTGCTACGTAACCCTCGGTCCGAT
* ** *
672808 CTAATCTTAGACCCGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTC
190 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* *
672873 AACCCATGAAACGAGTGTGCGG-G-T-GC-TC-A-A-CT-GACCGGAGAGGCATAATGCACAAGC
255 AACCCATGAAACGAGCGTGCGGAGCTAGCGTCAAGAGCTCGACCAGAGAGGCATAATGCACAAGC
* *
672930 CGGGGATCAGCCTGATCCC-CCTCTGCGTGCTGTCGATCC
320 CGGGGATCAGCCCG-GCCCTCCTCTGCGTGCTGTCGAT-C
* * *
672969 TGCTGTCGGTCCTGCTACCACAACCTTGGGTCTGGCTGGGGCTTAGACATGGAATAAACTCCATA
1 TGCTGTCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATA
* * *
673034 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAGAGACAGAATACGTAA
66 TGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG-CGATCGAAGAGGCAGAAT-CGTAA
* * * *
673099 ATTGAGGATCGGCCCGATCCCTCCTACGTGCTGCCGATCCTGCTGTCGTAACCCTTGGTCTGATC
129 ATTGAGGATCGGCCCGATCCC-CCTGCGTGCTG-CGATCCTGCT-ACGTAACCCTCGGTCCGATC
* * *
673164 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCGAAGTC
191 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTC
*
673228 GACCCATGAAACGAGCGT
255 AACCCATGAAACGAGCGT
673246 ACGATCACTC
Statistics
Matches: 529, Mismatches: 88, Indels: 42
0.80 0.13 0.06
Matches are distributed among these distances:
353 1 0.00
354 194 0.37
355 92 0.17
356 4 0.01
357 1 0.00
359 2 0.00
362 2 0.00
364 1 0.00
365 1 0.00
366 2 0.00
367 93 0.18
368 132 0.25
369 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (357 bp):
TGCTGTCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATA
TGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCGATCGAAGAGGCAGAATCGTAAAT
TGAGGATCGGCCCGATCCCCCTGCGTGCTGCGATCCTGCTACGTAACCCTCGGTCCGATCTGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
TGAAACGAGCGTGCGGAGCTAGCGTCAAGAGCTCGACCAGAGAGGCATAATGCACAAGCCGGGGA
TCAGCCCGGCCCTCCTCTGCGTGCTGTCGATC
Found at i:673206 original size:26 final size:26
Alignment explanation
Indices: 673168--673220 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
673158 CTGATCTGAT
*
673168 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
673194 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
673220 C
1 C
673221 CGAAGTCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:673544 original size:25 final size:26
Alignment explanation
Indices: 673500--673551 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
673490 CCAGTTTGAT
* *
673500 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
673526 CTTAGACTAGG-ATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
673551 C
1 C
673552 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:674243 original size:26 final size:26
Alignment explanation
Indices: 674205--674257 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
674195 GGCTTAAACT
*
674205 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
674231 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
674257 C
1 C
674258 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:682216 original size:26 final size:26
Alignment explanation
Indices: 682178--682230 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
682168 GGCTCAAAAT
682178 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
682204 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
682230 C
1 C
682231 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:682683 original size:158 final size:158
Alignment explanation
Indices: 682359--682696 Score: 382
Period size: 159 Copynumber: 2.1 Consensus size: 158
682349 GATTTGGCCT
* * * *
682359 GATCTTAGACTGGGAATGAACTCCTATGCATAAGTCAACCCACGAAACAAGCGTACGGGTGCTGA
1 GATCTTAGACTGGGAATGAACTCCTATGCATAAGCCAACCCACGAAACAAGCATACGGGCGCTCA
* *** * *
682424 GCCGATCGAAGAGGAATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCAGT
66 GCCGACCGAAGAGGAATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAGT
*
682489 CCCGCTGCCACAACCCTCGGTCCAGCTG
131 CCCGCTGCCACAACCCTCGGTCCAGCTC
** * **
682517 GGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCT
1 GATCTTAGAC-TGGGAATGAACT-CCTATGCATAAGCCAACCCACGAAACAAGCATACGGGCGCT
* * *
682581 CAGCCGACCAGAA-AGGCAA-AATTCGTAAGCCAAGGATCGGCCCGATCCCCC-CTGCGTGCTGT
64 CAGCCGACC-GAAGAGG-AATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGT
* * *
682643 C-GATCCTGCTGTCACAACCCTCGGTCC-GATTC
127 CAG-TCCCGCTGCCACAACCCTCGGTCCAG-CTC
682675 GATCTTAGACTGGGAATGAACT
1 GATCTTAGACTGGGAATGAACT
682697 TCGTATGCTT
Statistics
Matches: 149, Mismatches: 24, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
157 3 0.02
158 70 0.47
159 71 0.48
160 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GATCTTAGACTGGGAATGAACTCCTATGCATAAGCCAACCCACGAAACAAGCATACGGGCGCTCA
GCCGACCGAAGAGGAATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAGT
CCCGCTGCCACAACCCTCGGTCCAGCTC
Found at i:682730 original size:26 final size:26
Alignment explanation
Indices: 682678--682730 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
682668 CCGATTCGAT
* *
682678 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
682704 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
682730 C
1 C
682731 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:683087 original size:26 final size:26
Alignment explanation
Indices: 683045--683095 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
683035 CCGGTCTAAT
*
683045 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
683071 CTTAGACAT-GGATTGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
683096 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Done.