Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 47 of 93
Found at i:5933439 original size:115 final size:115
Alignment explanation
Indices: 5933312--5933536 Score: 355
Period size: 115 Copynumber: 2.0 Consensus size: 115
5933302 CCTACGTTAC
** * *
5933312 AACCTTTGAAAAGTTTATATTGGATCAAGTATGAAGGTTTAAAATTAAAGCATTTCT-TATGGAA
1 AACCTTTGAAAAGTACATATGGGATCAAGTATGAAGGCTTAAAATTAAAGCATTTCTCT-TGGAA
*
5933376 TAATGAACATGAATCTTTTG-AGTTCCCTTTTATTACCTAATTTTCTGTCTG
65 AAATGAACATGAATCTTTTGAAGTTCCC-TTTATTACCTAATTTTCTGTCTG
*
5933427 AACCTTTGAAAAGTACATATGGGATCAAGTATGAAGGCTTAAAATTGAAGCATTTCTCTTGGAAA
1 AACCTTTGAAAAGTACATATGGGATCAAGTATGAAGGCTTAAAATTAAAGCATTTCTCTTGGAAA
*
5933492 AATGAACATGAATCTTTTGAATTTCCCTTTATTACCTAATTTTCT
66 AATGAACATGAATCTTTTGAAGTTCCCTTTATTACCTAATTTTCT
5933537 ATTTAGACCG
Statistics
Matches: 101, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
115 94 0.93
116 7 0.07
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (115 bp):
AACCTTTGAAAAGTACATATGGGATCAAGTATGAAGGCTTAAAATTAAAGCATTTCTCTTGGAAA
AATGAACATGAATCTTTTGAAGTTCCCTTTATTACCTAATTTTCTGTCTG
Found at i:5934773 original size:33 final size:33
Alignment explanation
Indices: 5934684--5934812 Score: 96
Period size: 33 Copynumber: 3.9 Consensus size: 33
5934674 AAGCTCGATT
* * * *
5934684 TATCTGGCCTTCAATGAAGTTTTAAGCTCAGTT
1 TATCTGGCCATCAATGAAGTTTTAAACCCAGTC
* ** * * * * * *
5934717 TAGCTAACCCTTAAAGAAATTTTAAACTCAGTT
1 TATCTGGCCATCAATGAAGTTTTAAACCCAGTC
* * *
5934750 TATCTGGCTATCATTGAAGTTTTAAGCCCAGTC
1 TATCTGGCCATCAATGAAGTTTTAAACCCAGTC
* *
5934783 TATCTGGCCATTAATGAAGTTTTAAGCCCA
1 TATCTGGCCATCAATGAAGTTTTAAACCCA
5934813 ATTTATTAGG
Statistics
Matches: 73, Mismatches: 23, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
33 73 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (33 bp):
TATCTGGCCATCAATGAAGTTTTAAACCCAGTC
Found at i:5934818 original size:66 final size:65
Alignment explanation
Indices: 5934666--5934888 Score: 193
Period size: 66 Copynumber: 3.4 Consensus size: 65
5934656 AGCCTTCAAA
* * * ** *
5934666 GAAGATTTAAGCTCGATTTATCTGGCCTTCAATGAAGTTTTAAGCTCAGTTTAGCTAACCCTTAA
1 GAAGATTTAAGCCCAATTTATCTGG-CTTCAATGAAGTTTTAAGCCCAGTTTAGCTGGCCATTAA
*
5934731 A
65 T
* * * * * *
5934732 GAA-ATTTTAAACTCAGTTTATCTGGCTATCATTGAAGTTTTAAGCCCAGTCTATCTGGCCATTA
1 GAAGA-TTTAAGCCCAATTTATCTGGCT-TCAATGAAGTTTTAAGCCCAGTTTAGCTGGCCATTA
5934796 AT
64 AT
* * * *
5934798 GAAGTTTTAAGCCCAATTTAT-TAGGCTCCAAAT-AAGGTTTTAAGCCCAATTTAGCTGGCCTTT
1 GAAGATTTAAGCCCAATTTATCT-GGCTTC-AATGAA-GTTTTAAGCCCAGTTTAGCTGGCCATT
5934861 AAT
63 AAT
* *
5934864 GAA-ATTTAAGCCTAATTTAGCTGGC
1 GAAGATTTAAGCCCAATTTATCTGGC
5934889 CCTAAAAGAG
Statistics
Matches: 126, Mismatches: 24, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
65 24 0.19
66 102 0.81
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (65 bp):
GAAGATTTAAGCCCAATTTATCTGGCTTCAATGAAGTTTTAAGCCCAGTTTAGCTGGCCATTAAT
Found at i:5936175 original size:132 final size:132
Alignment explanation
Indices: 5935964--5936536 Score: 544
Period size: 132 Copynumber: 4.3 Consensus size: 132
5935954 GATCTTCGGA
* * * * * * * * * * *
5935964 CATAATTTTGATTTACAGTGTTGTCTCGATCGATTCTCTATTTTTTGACTTGTGATGTTGTTCCA
1 CATAATTTTGATTCACGGTGTTATCCCAATCGATTCTTTACTTTTTGACTTGCGATATTGTCCCT
* * * ** *
5936029 ATCGATTCTATAAGACCTTCAAGCACCATTTCTAAGACCTTCGGGCATAATCTTTAAGACATCCA
66 GTCGATTCTGTAAGACCTTCGAGCATGATTTCTAAGACCTTCGGGCATAATCTTTAAGACCTCCA
5936094 GG
131 GG
* *
5936096 CATAATTTTGATTCACGGTGTTATCCCAATCAATTCTTTACTTTTTAACTTGCGATATTGTCCCT
1 CATAATTTTGATTCACGGTGTTATCCCAATCGATTCTTTACTTTTTGACTTGCGATATTGTCCCT
* * * * **
5936161 GTTGATTCTGTAAGACCTTCGTGCATGATTTCTAAGACTTTCGGGCATAATCTTCAAGACCTCTG
66 GTCGATTCTGTAAGACCTTCGAGCATGATTTCTAAGACCTTCGGGCATAATCTTTAAGACCTCCA
5936226 GG
131 GG
* * * * * * * * * *
5936228 TATAATTTTGATTCGCGGTATTGTCTCGATTGATTCTCTAATTTTTGACTTGCGGTATTGTCCCT
1 CATAATTTTGATTCACGGTGTTATCCCAATCGATTCTTTACTTTTTGACTTGCGATATTGTCCCT
* * * * *
5936293 GTCGATTCTGTAAGACC-TCCAGACATGATTTCTAAGACCTTCGGGCATAATGTTTAATACTTTC
66 GTCGATTCTGTAAGACCTTCGAG-CATGATTTCTAAGACCTTCGGGCATAATCTTTAAGACCTCC
5936357 AGG
130 AGG
* * * * ** * * *
5936360 AATAATTTTGATTCATGATGTTATTCCAATCGATTCTTTACTTTTTGACTTATGGTGTTGT--TT
1 CATAATTTTGATTCACGGTGTTATCCCAATCGATTCTTTACTTTTTGACTTGCGATATTGTCCCT
* * * * * *
5936423 GAATCAATTCTGTAAGACTTTTGAGCATGATTTTTAAGACCTCCGAGCATAATCTTTAAGACCTC
66 G--TCGATTCTGTAAGACCTTCGAGCATGATTTCTAAGACCTTCGGGCATAATCTTTAAGACCTC
5936488 C-GAG
129 CAG-G
* * * *
5936492 CATAATTTTGATTGACGATGTTATCCCAATTGAATCTTTA-TTTTT
1 CATAATTTTGATTCACGGTGTTATCCCAATCGATTCTTTACTTTTT
5936537 CAACTTACAG
Statistics
Matches: 355, Mismatches: 81, Indels: 11
0.79 0.18 0.02
Matches are distributed among these distances:
130 2 0.01
131 9 0.03
132 341 0.96
133 3 0.01
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (132 bp):
CATAATTTTGATTCACGGTGTTATCCCAATCGATTCTTTACTTTTTGACTTGCGATATTGTCCCT
GTCGATTCTGTAAGACCTTCGAGCATGATTTCTAAGACCTTCGGGCATAATCTTTAAGACCTCCA
GG
Found at i:5936197 original size:22 final size:23
Alignment explanation
Indices: 5936171--5936222 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
5936161 GTTGATTCTG
* *
5936171 TAAGACCTTCGTGCATGAT-TTC
1 TAAGACCTTCGGGCATAATCTTC
*
5936193 TAAGACTTTCGGGCATAATCTTC
1 TAAGACCTTCGGGCATAATCTTC
5936216 -AAGACCT
1 TAAGACCT
5936223 CTGGGTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (23 bp):
TAAGACCTTCGGGCATAATCTTC
Found at i:5936435 original size:264 final size:263
Alignment explanation
Indices: 5935964--5936504 Score: 636
Period size: 264 Copynumber: 2.0 Consensus size: 263
5935954 GATCTTCGGA
* * * * * *
5935964 CATAATTTTGATTTACAGTGTTGTCTCGATCGATTCTCTATTTTTTGACTTGTGATGTTGTTCCA
1 CATAATTTTGATTCACAGTATTGTCTCGATCGATTCTCTAATTTTTGACTTGCGATATTGTCCCA
*
5936029 ATCGATTCTATAAGACCTTCAAGCACCATTTCTAAGACCTTCGGGCATAATCTTTAAGACATCCA
66 ATCGATTCTATAAGACCTCCAAGCACCATTTCTAAGACCTTCGGGCATAATCTTTAAGACATCCA
* * *
5936094 GGCATAATTTTGATTCACGGTGTTATCCCAATCAATTCTTTACTTTTTAACTTGCGATATTGTCC
131 GGAATAATTTTGATTCACGATGTTATCCCAATCAATTCTTTACTTTTTAACTTACGATATTGT-C
** * * * *
5936159 CTGTTGATTCTGTAAGACCTTCGTGCATGATTTCTAAGACTTTCGGGCATAATCTTCAAGACCTC
195 CTGTCAATTCTGTAAGACCTTCGAGCATGATTTCTAAGACCTCCGAGCATAATCTTCAAGACCTC
* *
5936224 TGGG
260 CGAG
* * * * * *
5936228 TATAATTTTGATTCGCGGTATTGTCTCGATTGATTCTCTAATTTTTGACTTGCGGTATTGTCCCT
1 CATAATTTTGATTCACAGTATTGTCTCGATCGATTCTCTAATTTTTGACTTGCGATATTGTCCCA
* * ** * * * *
5936293 GTCGATTCTGTAAGACCTCC-AGACATGATTTCTAAGACCTTCGGGCATAATGTTTAATACTTTC
66 ATCGATTCTATAAGACCTCCAAG-CACCATTTCTAAGACCTTCGGGCATAATCTTTAAGACATCC
* * * * * * *
5936357 AGGAATAATTTTGATTCATGATGTTATTCCAATCGATTCTTTACTTTTTGACTTATGGTGTTGT-
130 AGGAATAATTTTGATTCACGATGTTATCCCAATCAATTCTTTACTTTTTAACTTACGATATTGTC
* * * * *
5936421 TTGAATCAATTCTGTAAGACTTTTGAGCATGATTTTTAAGACCTCCGAGCATAATCTTTAAGACC
195 CTG--TCAATTCTGTAAGACCTTCGAGCATGATTTCTAAGACCTCCGAGCATAATCTTCAAGACC
5936486 TCCGAG
258 TCCGAG
5936492 CATAATTTTGATT
1 CATAATTTTGATT
5936505 GACGATGTTA
Statistics
Matches: 229, Mismatches: 45, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
262 2 0.01
263 2 0.01
264 225 0.98
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (263 bp):
CATAATTTTGATTCACAGTATTGTCTCGATCGATTCTCTAATTTTTGACTTGCGATATTGTCCCA
ATCGATTCTATAAGACCTCCAAGCACCATTTCTAAGACCTTCGGGCATAATCTTTAAGACATCCA
GGAATAATTTTGATTCACGATGTTATCCCAATCAATTCTTTACTTTTTAACTTACGATATTGTCC
TGTCAATTCTGTAAGACCTTCGAGCATGATTTCTAAGACCTCCGAGCATAATCTTCAAGACCTCC
GAG
Found at i:5936470 original size:22 final size:22
Alignment explanation
Indices: 5936445--5936500 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
5936435 TAAGACTTTT
*
5936445 GAGCATGATTTTTAAGACCTCC
1 GAGCATAATTTTTAAGACCTCC
*
5936467 GAGCATAATCTTTAAGACCTCC
1 GAGCATAATTTTTAAGACCTCC
5936489 GAGCATAATTTT
1 GAGCATAATTTT
5936501 GATTGACGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (22 bp):
GAGCATAATTTTTAAGACCTCC
Found at i:5936738 original size:37 final size:37
Alignment explanation
Indices: 5936696--5936766 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
5936686 TTGACTCGCG
5936696 GTGTTAT-CTCGATCAACTCTTTACTTTTCAACTTGTA
1 GTGTTATCCT-GATCAACTCTTTACTTTTCAACTTGTA
* *
5936733 GTGTTATCCTGATCAATTCTTTACTTTTCGACTT
1 GTGTTATCCTGATCAACTCTTTACTTTTCAACTT
5936767 ATGATGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 29 0.94
38 2 0.06
ACGTcount: A:0.20, C:0.21, G:0.11, T:0.48
Consensus pattern (37 bp):
GTGTTATCCTGATCAACTCTTTACTTTTCAACTTGTA
Found at i:5936775 original size:37 final size:37
Alignment explanation
Indices: 5936696--5936795 Score: 107
Period size: 37 Copynumber: 2.7 Consensus size: 37
5936686 TTGACTCGCG
* *
5936696 GTGTTAT-CTCGATCAACTCTTTACTTTTCAACTTGTA
1 GTGTTATCCT-GATCAATTCTTTACTTTTCAACTTATA
*
5936733 GTGTTATCCTGATCAATTCTTTACTTTTCGACTTAT-
1 GTGTTATCCTGATCAATTCTTTACTTTTCAACTTATA
**
5936769 GATGTTATTCC-GATTGATTCTTTACTT
1 G-TGTTA-TCCTGATCAATTCTTTACTT
5936796 CTTGACTCAC
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
36 1 0.02
37 49 0.89
38 5 0.09
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.49
Consensus pattern (37 bp):
GTGTTATCCTGATCAATTCTTTACTTTTCAACTTATA
Found at i:5937177 original size:28 final size:26
Alignment explanation
Indices: 5937135--5937213 Score: 95
Period size: 28 Copynumber: 2.9 Consensus size: 26
5937125 GGTTCTTAGA
5937135 CTTAGGCCCAATTTCAATTCAATTGAG
1 CTTAGGCCC-ATTTCAATTCAATTGAG
*
5937162 CTCTAGGCCCGATTTCAATTCAATTGGG
1 CT-TAGGCCC-ATTTCAATTCAATTGAG
* *
5937190 CTTCAAGCCCAATTCAATTCAATT
1 CTT-AGGCCCATTTCAATTCAATT
5937214 AGGCCCGAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
27 16 0.35
28 30 0.65
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (26 bp):
CTTAGGCCCATTTCAATTCAATTGAG
Found at i:5938577 original size:21 final size:21
Alignment explanation
Indices: 5938553--5938608 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
5938543 ATAATAACTA
*
5938553 AAAAAT-ATATTAAAATGCTT
1 AAAAATAATAATAAAATGCTT
*
5938573 AAAAATAATAATAAAATGATAAT
1 AAAAATAATAATAAAATGCT--T
5938596 AAAAATAA-AATAA
1 AAAAATAATAATAA
5938609 TATTTTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 6 0.19
21 11 0.35
22 5 0.16
23 9 0.29
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.27
Consensus pattern (21 bp):
AAAAATAATAATAAAATGCTT
Found at i:5938984 original size:29 final size:28
Alignment explanation
Indices: 5938877--5938994 Score: 114
Period size: 28 Copynumber: 4.1 Consensus size: 28
5938867 TAAAAAATAA
* * *
5938877 AAAATCTAAACCTTAAAAACCTAACCCT
1 AAAATCAAAACCTTAAAATCCAAACCCT
* * *
5938905 AAAATCAAAACCCCT-AAATCAAAACTCT
1 AAAATCAAAA-CCTTAAAATCCAAACCCT
*
5938933 AAAATCAAAA-CTGAAAACTTCCAAACCCT
1 AAAATCAAAACCTTAAAA--TCCAAACCCT
*
5938962 CAAATTCAAAACCTTAAAATCCAAACCCT
1 -AAAATCAAAACCTTAAAATCCAAACCCT
5938991 AAAA
1 AAAA
5938995 ACGAAACTCT
Statistics
Matches: 71, Mismatches: 13, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
26 1 0.01
27 3 0.04
28 31 0.44
29 21 0.30
30 9 0.13
31 6 0.08
ACGTcount: A:0.53, C:0.28, G:0.01, T:0.19
Consensus pattern (28 bp):
AAAATCAAAACCTTAAAATCCAAACCCT
Found at i:5938995 original size:15 final size:14
Alignment explanation
Indices: 5938877--5939211 Score: 81
Period size: 14 Copynumber: 23.2 Consensus size: 14
5938867 TAAAAAATAA
* *
5938877 AAAATCTAAACCTT
1 AAAATCCAAACCCT
* *
5938891 AAAAACCTAACCCT
1 AAAATCCAAACCCT
*
5938905 AAAATCAAAACCCCT
1 AAAATCCAAA-CCCT
* *
5938920 -AAATCAAAACTCT
1 AAAATCCAAACCCT
*
5938933 AAAAT-CAAA-ACT
1 AAAATCCAAACCCT
5938945 GAAAACTTCCAAACCCT
1 -AAAA--TCCAAACCCT
* * *
5938962 CAAATTCAAAACCTT
1 -AAAATCCAAACCCT
5938977 AAAATCCAAACCCT
1 AAAATCCAAACCCT
* * *
5938991 AAAAACGAAACTCT
1 AAAATCCAAACCCT
* *
5939005 AAACCTGCTAAACCCT
1 AAA-AT-CCAAACCCT
* *
5939021 AAAAT-TAAACTCT
1 AAAATCCAAACCCT
* *
5939034 AAACCTCCAAACTCT
1 AAA-ATCCAAACCCT
* * *
5939049 AAAAACAAAATCCT
1 AAAATCCAAACCCT
**
5939063 AAACCCCCCAAACCCT
1 AAA--ATCCAAACCCT
*
5939079 AAAAT-TAAACCCT
1 AAAATCCAAACCCT
* * *
5939092 AAACCTTCTAAACCTT
1 AAA--ATCCAAACCCT
* *
5939108 ACAATCAAAACCCT
1 AAAATCCAAACCCT
* **
5939122 AAACCTCCAAACTAT
1 AAA-ATCCAAACCCT
* *
5939137 AAAATCAAAATTCC-
1 AAAATCCAAA-CCCT
**
5939151 AAACCCTCAAACCCT
1 AAAATC-CAAACCCT
*
5939166 AAAAT-TAAACCCT
1 AAAATCCAAACCCT
** *
5939179 AAACCCCATAAACCAT
1 AAAATCC--AAACCCT
*
5939195 AAAATCAAAACCCT
1 AAAATCCAAACCCT
5939209 AAA
1 AAA
5939212 TCCTCCAAAC
Statistics
Matches: 226, Mismatches: 72, Indels: 46
0.66 0.21 0.13
Matches are distributed among these distances:
12 2 0.01
13 40 0.18
14 95 0.42
15 41 0.18
16 43 0.19
17 5 0.02
ACGTcount: A:0.50, C:0.31, G:0.01, T:0.19
Consensus pattern (14 bp):
AAAATCCAAACCCT
Found at i:5939043 original size:58 final size:58
Alignment explanation
Indices: 5938953--5939222 Score: 183
Period size: 58 Copynumber: 4.6 Consensus size: 58
5938943 CTGAAAACTT
* * * * **
5938953 CCAAACCCTCAAATTCAAAACCTTAAA-ATCCAAACCCTAAAAACGAAA-CTCTAAACCTG
1 CCAAACCCTAAAATT--AAACCCTAAACCTCCAAACCCTAAAAACAAAATC-CTAAACCCC
* * *
5939012 CTAAACCCTAAAATTAAACTCTAAACCTCCAAACTCTAAAAACAAAATCCTAAACCCC
1 CCAAACCCTAAAATTAAACCCTAAACCTCCAAACCCTAAAAACAAAATCCTAAACCCC
* * * * * *
5939070 CCAAACCCTAAAATTAAACCCTAAACCTTCTAAACCTTACAATCAAAACCCTAAA-CCT
1 CCAAACCCTAAAATTAAACCCTAAACC-TCCAAACCCTAAAAACAAAATCCTAAACCCC
** * * ** *
5939128 CCAAACTATAAAATCAAAATTCC-AAACC-CTCAAACCCT-AAAATTAAACCCTAAACCCC
1 CCAAACCCTAAAAT-TAAA-CCCTAAACCTC-CAAACCCTAAAAACAAAATCCTAAACCCC
** * *
5939186 ATAAACCATAAAATCAAAACCCTAAATCCTCCAAACC
1 CCAAACCCTAAAAT-TAAACCCTAAA-CCTCCAAACC
5939223 AAAACCCTCT
Statistics
Matches: 168, Mismatches: 33, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
57 23 0.14
58 91 0.54
59 51 0.30
60 3 0.02
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.18
Consensus pattern (58 bp):
CCAAACCCTAAAATTAAACCCTAAACCTCCAAACCCTAAAAACAAAATCCTAAACCCC
Found at i:5939097 original size:87 final size:87
Alignment explanation
Indices: 5938982--5939221 Score: 297
Period size: 87 Copynumber: 2.7 Consensus size: 87
5938972 ACCTTAAAAT
** * * * * *
5938982 CCAAACCCTAAAAACGAAACTCTAAACCTGCTAAACCCTAAAAT-TAAACTCTAAACCTCCAAAC
1 CCAAACCCT-AAAATTAAACCCTAAACCTCCTAAACCATAAAATCAAAACCCTAAACCTCCAAAC
*
5939046 TCTAAAAACAAAA-TCCTAAACCCC
65 TATAAAAACAAAATTCC-AAA-CCC
* * *
5939070 CCAAACCCTAAAATTAAACCCTAAACCTTCTAAACCTTACAATCAAAACCCTAAACCTCCAAACT
1 CCAAACCCTAAAATTAAACCCTAAACCTCCTAAACCATAAAATCAAAACCCTAAACCTCCAAACT
*
5939135 ATAAAATCAAAATTCCAAACCC
66 ATAAAAACAAAATTCCAAACCC
*
5939157 TCAAACCCTAAAATTAAACCCTAAACC-CCATAAACCATAAAATCAAAACCCTAAATCCTCCAAA
1 CCAAACCCTAAAATTAAACCCTAAACCTCC-TAAACCATAAAATCAAAACCCTAAA-CCTCCAAA
5939221 C
64 C
5939222 CAAAACCCTC
Statistics
Matches: 134, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
86 1 0.01
87 80 0.60
88 50 0.37
89 3 0.02
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.18
Consensus pattern (87 bp):
CCAAACCCTAAAATTAAACCCTAAACCTCCTAAACCATAAAATCAAAACCCTAAACCTCCAAACT
ATAAAAACAAAATTCCAAACCC
Found at i:5939121 original size:30 final size:29
Alignment explanation
Indices: 5938899--5939222 Score: 157
Period size: 29 Copynumber: 11.1 Consensus size: 29
5938889 TTAAAAACCT
*
5938899 AACCCTAAAATCAAAACCCCTAAA--TC-A
1 AACCTTAAAATCAAAA-CCCTAAACCTCTA
* *** * *
5938926 AAACTCTAAAATCAAAACTGAAAACTTCCA
1 AACCT-TAAAATCAAAACCCTAAACCTCTA
* * * * *
5938956 AACCCTCAAATTCAAAACCTTAAA-ATCCA
1 AA-CCTTAAAATCAAAACCCTAAACCTCTA
* * * *
5938985 AACCCTAAAAACGAAACTCTAAACCTGCTA
1 AACCTTAAAATCAAAACCCTAAACCT-CTA
* * * *
5939015 AACCCTAAAAT-TAAACTCTAAACCTCCA
1 AACCTTAAAATCAAAACCCTAAACCTCTA
* * * *
5939043 AA-CTCTAAAAACAAAATCCTAAACCCCCCA
1 AACCT-TAAAATCAAAACCCTAAA-CCTCTA
* *
5939073 AACCCTAAAAT-TAAACCCTAAACCTTCTA
1 AACCTTAAAATCAAAACCCTAAACC-TCTA
* *
5939102 AACCTTACAATCAAAACCCTAAACCTCCA
1 AACCTTAAAATCAAAACCCTAAACCTCTA
*
5939131 AA-CTATAAAATCAAAATTCC-AAACC-CTCA
1 AACCT-TAAAATCAAAA-CCCTAAACCTCT-A
* * *
5939160 AACCCTAAAAT-TAAACCCTAAACCCCATA
1 AACCTTAAAATCAAAACCCTAAACCTC-TA
* *
5939189 AACCATAAAATCAAAACCCTAAATCCTCCA
1 AACCTTAAAATCAAAACCCTAAA-CCTCTA
5939219 AACC
1 AACC
5939223 AAAACCCTCT
Statistics
Matches: 225, Mismatches: 50, Indels: 41
0.71 0.16 0.13
Matches are distributed among these distances:
27 10 0.04
28 47 0.21
29 91 0.40
30 71 0.32
31 6 0.03
ACGTcount: A:0.49, C:0.32, G:0.01, T:0.18
Consensus pattern (29 bp):
AACCTTAAAATCAAAACCCTAAACCTCTA
Found at i:5939266 original size:22 final size:22
Alignment explanation
Indices: 5939224--5939280 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 22
5939214 CTCCAAACCA
*
5939224 AAACCCTCTAAACCCTAAGAC-C
1 AAACCC-CAAAACCCTAAGACTC
*
5939246 AAACCCCAAAACCCTTGAGACTC
1 AAACCCCAAAACCC-TAAGACTC
5939269 AAA--CCAAAACCC
1 AAACCCCAAAACCC
5939281 CAAAATCCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 16 0.52
22 11 0.35
23 4 0.13
ACGTcount: A:0.44, C:0.40, G:0.05, T:0.11
Consensus pattern (22 bp):
AAACCCCAAAACCCTAAGACTC
Found at i:5941485 original size:18 final size:18
Alignment explanation
Indices: 5941447--5941500 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
5941437 AATAAAGAAA
* *
5941447 AAAATTCAAATTCAAATTC
1 AAAATT-AAAATCAAAATC
* *
5941466 AAATTTAAAATCGAAATC
1 AAAATTAAAATCAAAATC
*
5941484 AAAATTGAAATCAAAAT
1 AAAATTAAAATCAAAAT
5941501 TTATTTTATT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 23 0.82
19 5 0.18
ACGTcount: A:0.57, C:0.11, G:0.04, T:0.28
Consensus pattern (18 bp):
AAAATTAAAATCAAAATC
Found at i:5941501 original size:12 final size:12
Alignment explanation
Indices: 5941472--5941501 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
5941462 ATTCAAATTT
*
5941472 AAAATCGAAATC
1 AAAATTGAAATC
5941484 AAAATTGAAATC
1 AAAATTGAAATC
5941496 AAAATT
1 AAAATT
5941502 TATTTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.60, C:0.10, G:0.07, T:0.23
Consensus pattern (12 bp):
AAAATTGAAATC
Found at i:5941848 original size:26 final size:26
Alignment explanation
Indices: 5941799--5941867 Score: 88
Period size: 26 Copynumber: 2.6 Consensus size: 26
5941789 TTAATATAAG
*
5941799 TATTAAA-ATATTAAAAGTTATTTAT
1 TATTAAATATATTCAAAGTTATTTAT
5941824 TATTAAAGTATATTCAAA-TTATTTAT
1 TATTAAA-TATATTCAAAGTTATTTAT
5941850 TATTAAATTATTATTCAA
1 TATTAAA-TA-TATTCAA
5941868 GAATAATTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
25 7 0.18
26 17 0.44
27 15 0.38
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (26 bp):
TATTAAATATATTCAAAGTTATTTAT
Found at i:5942035 original size:15 final size:16
Alignment explanation
Indices: 5942017--5942055 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
5942007 TTTTAATATT
5942017 AATATTTAT-TATTAA
1 AATATTTATATATTAA
5942032 AATATTTATACTATTAA
1 AATATTTATA-TATTAA
5942049 AATATTT
1 AATATTT
5942056 GTATTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 9 0.41
17 13 0.59
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
AATATTTATATATTAA
Found at i:5942216 original size:20 final size:20
Alignment explanation
Indices: 5942193--5942277 Score: 77
Period size: 21 Copynumber: 4.3 Consensus size: 20
5942183 ATTACTATTC
*
5942193 TTAAAATATTATTTTTAATA
1 TTAAAATATTATATTTAATA
* *
5942213 TTAAAATAGTAATATTTATTA
1 TTAAAATA-TTATATTTAATA
*
5942234 TTAAAATATT-TA--TACTA
1 TTAAAATATTATATTTAATA
* *
5942251 TTAAAATATTTCTATTTTATA
1 TTAAAATA-TTATATTTAATA
5942272 TTAAAA
1 TTAAAA
5942278 GTATAGATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
17 12 0.23
18 2 0.04
19 4 0.08
20 9 0.17
21 26 0.49
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (20 bp):
TTAAAATATTATATTTAATA
Found at i:5942243 original size:15 final size:16
Alignment explanation
Indices: 5942223--5942261 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
5942213 TTAAAATAGT
5942223 AATATTTAT-TATTAA
1 AATATTTATATATTAA
5942238 AATATTTATACTATTAA
1 AATATTTATA-TATTAA
5942255 AATATTT
1 AATATTT
5942262 CTATTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 9 0.41
17 13 0.59
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
AATATTTATATATTAA
Found at i:5942267 original size:38 final size:38
Alignment explanation
Indices: 5942202--5942277 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
5942192 CTTAAAATAT
*
5942202 TATTTTTAATATTAAAATAGTAATA-TTTATTATTAAAA
1 TATTTATAATATTAAAATAGTAATATTTTA-TATTAAAA
* * **
5942240 TATTTATACTATTAAAATATTTCTATTTTATATTAAAA
1 TATTTATAATATTAAAATAGTAATATTTTATATTAAAA
5942278 GTATAGATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
38 28 0.88
39 4 0.12
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (38 bp):
TATTTATAATATTAAAATAGTAATATTTTATATTAAAA
Found at i:5942271 original size:206 final size:201
Alignment explanation
Indices: 5941976--5942388 Score: 627
Period size: 207 Copynumber: 2.0 Consensus size: 201
5941966 TTAAAATATT
*
5941976 TAAAATACTATTACTATTCTTAAAATTTTATTTTTAATATTAATATTTATTATTAAAATATTTAT
1 TAAAATACTATTACTATTCTTAAAATATTATTTTTAATATTAATATTTATTATTAAAATATTTAT
* * *
5942041 ACTATTAAAATATTTGTATTTTATATT-AAAGTATATATTTTAAAATCATAACTAATATTTTTTA
66 ACTATTAAAATATTTCTATTTTATATTAAAAGTATAGATTTTAAAATCATAACTAAAATTTTTTA
* * *
5942105 TTTCTATTTATTATTAAAAT-GGTAATAT-AATACCTTAATAAAT-AAAATATAAAATTATATAT
131 TTTATATATATTATTAAAATAGG-AATATAAATACCTTAATAAATAAAAAGATAAAATTATATAT
5942167 TTTAAAC
195 TTTAAAC
5942174 TAAAATACTATTACTATTCTTAAAATATTATTTTTAATATTAAAATAGTAATATTTATTATTAAA
1 TAAAATACTATTACTATTCTTAAAATATTATTTTT-A-A-T---AT--TAATATTTATTATTAAA
* *
5942239 ATATTTATACTATTAAAATATTTCTATTTTATATTAAAAGTATAGATTTTTAAGTCATAACTAAA
58 ATATTTATACTATTAAAATATTTCTATTTTATATTAAAAGTATAGATTTTAAAATCATAACTAAA
5942304 ATTTTTTATTTATATATATTATTAAAATAGGAATATAAATACCTTAATAAATAAAAAAGATAAAA
123 ATTTTTTATTTATATATATTATTAAAATAGGAATATAAATACCTTAATAAAT-AAAAAGATAAAA
5942369 TTATATATTTTAAAC
187 TTATATATTTTAAAC
5942384 TAAAA
1 TAAAA
5942389 ATAATAAAAA
Statistics
Matches: 193, Mismatches: 9, Indels: 14
0.89 0.04 0.06
Matches are distributed among these distances:
198 34 0.18
199 1 0.01
200 1 0.01
201 1 0.01
204 2 0.01
206 51 0.26
207 56 0.29
208 17 0.09
210 30 0.16
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (201 bp):
TAAAATACTATTACTATTCTTAAAATATTATTTTTAATATTAATATTTATTATTAAAATATTTAT
ACTATTAAAATATTTCTATTTTATATTAAAAGTATAGATTTTAAAATCATAACTAAAATTTTTTA
TTTATATATATTATTAAAATAGGAATATAAATACCTTAATAAATAAAAAGATAAAATTATATATT
TTAAAC
Found at i:5942501 original size:210 final size:205
Alignment explanation
Indices: 5942011--5942483 Score: 512
Period size: 207 Copynumber: 2.3 Consensus size: 205
5942001 TTTTATTTTT
* * * * * *
5942011 AATATTAATATTTATTATTAAAATATTTATACTATTAAAATATTTGTATTTTATATTAAAGTATA
1 AATAATAATATTTATTATTAAAATATTTAAAATAATAAAATATATCTATTTTATATTAAAGTATA
* * * *
5942076 TATTTTAAAATCATAACTAATATTTTTTATTTCTATTTATTATTAAAATGGTAATATAATACCTT
66 TATTTTTAAATCATAACTAAAATTTTTTATTTATATATATTATTAAAATGGTAATATAATACCTT
* * ** *
5942141 AATAAATAAAATATAAAATTATATATTTTAAACTAAAATACTATTACTATTCTTAAAATATTATT
131 AATAAATAAAAGATAAAATTATATATTTTAAACTAAAATAATAAAAATATTCTTAAAATATTATT
*
5942206 TTTAATATTAA
196 ATTAATA-TAA
* * * * *
5942217 AATAGTAATATTTATTATTAAAATATTTATACTATTAAAATATTTCTATTTTATATTAAAAGTAT
1 AATAATAATATTTATTATTAAAATATTTAAAATAATAAAATATATCTATTTTATATT-AAAGTAT
* *
5942282 AGATTTTTAAGTCATAACTAAAATTTTTTATTTATATATATTATTAAAATAGG-AATATAAATAC
65 ATATTTTTAAATCATAACTAAAATTTTTTATTTATATATATTATTAAAAT-GGTAATAT-AATAC
5942346 CTTAATAAATAAAAAAGATAAAATTATATATTTTAAACTAAAAATAATAAAAA-ATAT-TTAAAA
128 CTTAATAAAT--AAAAGATAAAATTATATATTTTAAACT-AAAATAATAAAAATAT-TCTTAAAA
*
5942409 TATTCA-TATTGA-A-AA
189 TATT-ATTATTAATATAA
* * *
5942424 AATAATATTATTATATTATTTGACATTGATTATTAAAATAATAAAA-ATAT-TATTTTATAT
1 AATAATAATATT-TATTA-TT-AAAAT-A-T-TTAAAATAATAAAATATATCTATTTTATAT
5942484 GTTATTATTT
Statistics
Matches: 230, Mismatches: 23, Indels: 23
0.83 0.08 0.08
Matches are distributed among these distances:
206 55 0.24
207 68 0.30
208 22 0.10
209 3 0.01
210 45 0.20
211 22 0.10
212 4 0.02
213 11 0.05
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (205 bp):
AATAATAATATTTATTATTAAAATATTTAAAATAATAAAATATATCTATTTTATATTAAAGTATA
TATTTTTAAATCATAACTAAAATTTTTTATTTATATATATTATTAAAATGGTAATATAATACCTT
AATAAATAAAAGATAAAATTATATATTTTAAACTAAAATAATAAAAATATTCTTAAAATATTATT
ATTAATATAA
Found at i:5942718 original size:31 final size:31
Alignment explanation
Indices: 5942683--5942744 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
5942673 ATTAATTAAA
*
5942683 TTTGAGTTTATAATATTATATTCAAAATCTT
1 TTTGAGTTTATAATATTACATTCAAAATCTT
5942714 TTTGAGTTTATAATATTACATTCAAAATCTT
1 TTTGAGTTTATAATATTACATTCAAAATCTT
5942745 ACTTGAGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.50
Consensus pattern (31 bp):
TTTGAGTTTATAATATTACATTCAAAATCTT
Found at i:5943066 original size:20 final size:19
Alignment explanation
Indices: 5943028--5943075 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
5943018 AGTTATTATC
* *
5943028 TTATTTTTTGTTGATTAAT
1 TTATTTTTTGTTAACTAAT
5943047 ATTATTTTTTGTTAACTAAT
1 -TTATTTTTTGTTAACTAAT
*
5943067 TAATTTTTT
1 TTATTTTTT
5943076 ATAAATAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (19 bp):
TTATTTTTTGTTAACTAAT
Found at i:5943978 original size:125 final size:125
Alignment explanation
Indices: 5943756--5944004 Score: 471
Period size: 125 Copynumber: 2.0 Consensus size: 125
5943746 AAATTAAGAC
*
5943756 TCTCCCCTTTCTCTGATGGGTTGCGTACCCAAAAAGTAAAAAAATCCAAAACGGGGATCTTAAGA
1 TCTCCCCTTTCTCTGATGGGTTGCGTACCCAAAAAATAAAAAAATCCAAAACGGGGATCTTAAGA
5943821 CGCCAAAACCAGAAAAAATGACGACCCCCCTCCTCCAAAGATAGACTTCCTAGGCTATAA
66 CGCCAAAACCAGAAAAAATGACGACCCCCCTCCTCCAAAGATAGACTTCCTAGGCTATAA
*
5943881 TCTCCCCTTTCTCTGATGGGTTGCGTACCCAAAAAATAAAAAAATCTAAAACGGGGATCTTAAGA
1 TCTCCCCTTTCTCTGATGGGTTGCGTACCCAAAAAATAAAAAAATCCAAAACGGGGATCTTAAGA
*
5943946 CGCCAAAACCAGAAAAAATGACTACCCCCCTCCTCCAAAGATAGACTTCCTAGGCTATA
66 CGCCAAAACCAGAAAAAATGACGACCCCCCTCCTCCAAAGATAGACTTCCTAGGCTATA
5944005 TTACATGTTA
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 121 1.00
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.21
Consensus pattern (125 bp):
TCTCCCCTTTCTCTGATGGGTTGCGTACCCAAAAAATAAAAAAATCCAAAACGGGGATCTTAAGA
CGCCAAAACCAGAAAAAATGACGACCCCCCTCCTCCAAAGATAGACTTCCTAGGCTATAA
Found at i:5944139 original size:21 final size:21
Alignment explanation
Indices: 5944113--5944156 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
5944103 TGAAATTAAA
5944113 AATTATGATAAAT-ATAAAATT
1 AATTATGAT-AATGATAAAATT
*
5944134 AATTATTATAATGATAAAATT
1 AATTATGATAATGATAAAATT
5944155 AA
1 AA
5944157 AATTAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (21 bp):
AATTATGATAATGATAAAATT
Found at i:5944165 original size:21 final size:21
Alignment explanation
Indices: 5944126--5944172 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
5944116 TATGATAAAT
* *
5944126 ATAAAATTAATTATTATAATG
1 ATAAAATTAATAATTATAATA
5944147 ATAAAATTAA-AATTAATAATA
1 ATAAAATTAATAATT-ATAATA
5944168 ATAAA
1 ATAAA
5944173 TTACTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
ATAAAATTAATAATTATAATA
Found at i:5944171 original size:27 final size:27
Alignment explanation
Indices: 5944117--5944171 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
5944107 ATTAAAAATT
* *
5944117 ATGATAAATATAAAATTAATTATTATA
1 ATGATAAATATAAAATTAATAATAATA
5944144 ATGATAAA-ATTAAAATTAATAATAATA
1 ATGATAAATA-TAAAATTAATAATAATA
5944171 A
1 A
5944172 ATTACTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (27 bp):
ATGATAAATATAAAATTAATAATAATA
Found at i:5945853 original size:34 final size:34
Alignment explanation
Indices: 5945768--5945905 Score: 107
Period size: 34 Copynumber: 4.1 Consensus size: 34
5945758 AAAACGTCAC
** ****
5945768 TATATTAACAGTGTTTGTATCTGAAAAATGTTGC
1 TATATTAACAGCATTTGTATCTGAAAAATGCCAT
** * * *
5945802 TATATTAGTAACGTTTGTATCTGAAAAATGTCAT
1 TATATTAACAGCATTTGTATCTGAAAAATGCCAT
* * * * *
5945836 TATATTAGCGGTATTTGTATC-AAAGAAATGCCTT
1 TATATTAACAGCATTTGTATCTGAA-AAATGCCAT
*
5945870 TATATTAACAGCATTTATATCTGAAAAATGCCAT
1 TATATTAACAGCATTTGTATCTGAAAAATGCCAT
5945904 TA
1 TA
5945906 ATTTAGTGAC
Statistics
Matches: 81, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
33 2 0.02
34 77 0.95
35 2 0.02
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (34 bp):
TATATTAACAGCATTTGTATCTGAAAAATGCCAT
Found at i:5954403 original size:185 final size:185
Alignment explanation
Indices: 5954051--5954486 Score: 507
Period size: 185 Copynumber: 2.4 Consensus size: 185
5954041 CTTTAAGACG
* * * *
5954051 ATTAGTGAAGGCA-TTTCTTGAGAACAAATGCCTTTAATAATTTTCTCTTAAAATTTTTAGGATT
1 ATTATTGAAGGCAGTTT-TTGAAAACAAA-ACCTTTAATAATTTTCTCTTAATATTTTTAGGATT
* ** * * * * * **
5954115 ATTAAAGGTGTTTTCTAGTGGAAAACACCTTCAATATTCCACAACTTAGATTTTGATACGATTGG
64 ATAAAAGACGTCTTCTAGTGAAAAACACCTTCAATATTCCACAACTCAAATTTTGAGACGATTAA
* * * * *
5954180 TGAAGGCATTTATTCTACATAAACATCTTTACTAATTCTTTCTAATTTACGTGCATA
129 TGAAAGCATTTATTATACAGAAACACCTTTACTAATTCTTTCTAATTTACGTGAATA
* * * * *
5954237 ATTATTGAAGGCGGTTTTTGATAACAAACACCTTTAATAATTTTTTGTTAATATTTTTGGGATTA
1 ATTATTGAAGGCAGTTTTTGAAAACAAA-ACCTTTAATAATTTTCTCTTAATATTTTTAGGATTA
* * * *
5954302 TAAAAGACGTCTTC-AGTGAAAAACGCCTTCAATATTTCACAACTCAAATTTTGAGATGGTTAAT
65 TAAAAGACGTCTTCTAGTGAAAAACACCTTCAATATTCCACAACTCAAATTTTGAGACGATTAAT
* *
5954366 GAAAGCGTTTATTATACAGAAACACCTTTATTAATTCTTTCTAATTTACGTGAATA
130 GAAAGCATTTATTATACAGAAACACCTTTACTAATTCTTTCTAATTTACGTGAATA
* * * * * *
5954422 ATTTTTGAAGGTATTTTTTGAAAACAAATCCTTCAATAATTTTCTCTTAATATTTTTAAGATTAT
1 ATTATTGAAGGCAGTTTTTGAAAACAAAACCTTTAATAATTTTCTCTTAATATTTTTAGGATTAT
5954487 TGAAAAATAC
Statistics
Matches: 208, Mismatches: 41, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
184 31 0.15
185 112 0.54
186 62 0.30
187 3 0.01
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (185 bp):
ATTATTGAAGGCAGTTTTTGAAAACAAAACCTTTAATAATTTTCTCTTAATATTTTTAGGATTAT
AAAAGACGTCTTCTAGTGAAAAACACCTTCAATATTCCACAACTCAAATTTTGAGACGATTAATG
AAAGCATTTATTATACAGAAACACCTTTACTAATTCTTTCTAATTTACGTGAATA
Found at i:5954505 original size:45 final size:44
Alignment explanation
Indices: 5954447--5954532 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 44
5954437 TTTTGAAAAC
*
5954447 AAATCCTTCAATAATTTTCTCTTAATATTTTTAAGATTATTGAA
1 AAATCCTTCAATAATTTTCTCCTAATATTTTTAAGATTATTGAA
*
5954491 AAATACCTTCAATAATTTTCTCCTAATATTTTTTAGATTATT
1 AAAT-CCTTCAATAATTTTCTCCTAATATTTTTAAGATTATT
5954533 AAAGGCGTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 4 0.10
45 35 0.90
ACGTcount: A:0.35, C:0.13, G:0.03, T:0.49
Consensus pattern (44 bp):
AAATCCTTCAATAATTTTCTCCTAATATTTTTAAGATTATTGAA
Found at i:5955086 original size:328 final size:328
Alignment explanation
Indices: 5954489--5955124 Score: 852
Period size: 328 Copynumber: 1.9 Consensus size: 328
5954479 AAGATTATTG
* * *
5954489 AAAAATACCTTCAATAATTTTCTCCTAATATTTTTTAGATTATTAAAGGCGTCTTTCAGTGAAAA
1 AAAAATACCTTCAATAATTTTCTCCTAATATTTTTGAGATTATTAAAGGCATCTTTCAGGGAAAA
* ** * * * *
5954554 ATGTTTTCAATATTTCACAACTCAAATTTTGAGATGATTAGTGAAGGTATTTATTCTACAAAAAA
66 ACGCCTTCAATATTCCACAACTCAAATTTTAAGACGATTAGTGAAGGCATTTATTCTACAAAAAA
* * * *
5954619 GCCTTCACTAATTCTTTTTAATTTACATACATAATTTTTGAATGCGTTTTTTCAAAACAAACGTC
131 GCCTTCACTAATTCCTTTTAATTTACATACATAATTATTCAATGCGTTTTTTCAAAACAAACGCC
* * * * *
5954684 TTCAATAATTTTCTCTTAGTATTTTTGAGATTATTAAAAGCAGCTTTCAGTGGAAAATGCCTTCA
196 TTCAATAATTTTCTCTTAATATTTTTGAGATTATTAAAAGCAGCTTCCAATAGAAAACGCCTTCA
* * *
5954749 ATATTTCACAACTTATATTTTGGGATCGTTAGTGAAAGCGTTTATTCTTGAAGGTGTTTTTTTTT
261 ATATTTCACAACTCAGATTTTGAGATCGTTAGTGAAAGCGTTTATTCTTGAAGGTGTTTTTTTTT
5954814 ACA
326 ACA
* * * *
5954817 AAAAATACCTTTAATAATTTTCTCTTAATATTTTTGGGATTATTAATA-GCATCTTTTAGGGAAA
1 AAAAATACCTTCAATAATTTTCTCCTAATATTTTTGAGATTATTAA-AGGCATCTTTCAGGGAAA
* *
5954881 AACGCCTTCAATATTCCATAACTCATATTTTAAGACGATTAGTGAAGGCATTTATTCTACAAAAA
65 AACGCCTTCAATATTCCACAACTCAAATTTTAAGACGATTAGTGAAGGCATTTATTCTACAAAAA
* * * *
5954946 TGCCTTTACTAATTCCTTTTAATTTACATGCATAATTATTCAA-G-GTATTTTTTAACAACAAAC
130 AGCCTTCACTAATTCCTTTTAATTTACATACATAATTATTCAATGCGT-TTTTTCAA-AACAAAC
5955009 GCCTTCAATAATTTTCTCTTAATATTTTT-AGGATTATT-AAAG-ACGTCTTCCAATAGAAAACG
193 GCCTTCAATAATTTTCTCTTAATATTTTTGA-GATTATTAAAAGCA-G-CTTCCAATAGAAAACG
* * * *
5955071 CTTTCAATATTTCACAACTCAGATTTTGAGATGGTTAGTGAAGGTGTTTATTCT
255 CCTTCAATATTTCACAACTCAGATTTTGAGATCGTTAGTGAAAGCGTTTATTCT
5955125 ACAAAAATAC
Statistics
Matches: 266, Mismatches: 36, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
326 3 0.01
327 14 0.05
328 248 0.93
329 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (328 bp):
AAAAATACCTTCAATAATTTTCTCCTAATATTTTTGAGATTATTAAAGGCATCTTTCAGGGAAAA
ACGCCTTCAATATTCCACAACTCAAATTTTAAGACGATTAGTGAAGGCATTTATTCTACAAAAAA
GCCTTCACTAATTCCTTTTAATTTACATACATAATTATTCAATGCGTTTTTTCAAAACAAACGCC
TTCAATAATTTTCTCTTAATATTTTTGAGATTATTAAAAGCAGCTTCCAATAGAAAACGCCTTCA
ATATTTCACAACTCAGATTTTGAGATCGTTAGTGAAAGCGTTTATTCTTGAAGGTGTTTTTTTTT
ACA
Found at i:5955294 original size:185 final size:185
Alignment explanation
Indices: 5954807--5955359 Score: 659
Period size: 186 Copynumber: 3.0 Consensus size: 185
5954797 TGAAGGTGTT
* * * * * *
5954807 TTTTTTTACAAAAAATACCTTTAATAATTTTCTCTTAATATTTTTGGGATTATTAATA-GCATCT
1 TTTTTTAACAACAAATGCCTTCAATAATTTTCTCTTAATATTTTTGAGATTATTAA-AGGCGTCT
** * * * * *
5954871 TTTAGGGAAAAACGCCTTCAATATTCCATAACTCATATTTTAAGACGATTAGTGAAGGCATTTAT
65 TCCAGTGAAAAACGCTTTCAATATTCCATAACTCAAATTTGAA-ACGGTTAGTGAAGGCATTTAT
* *
5954936 TCTACAAAAATGCCTTT-ACTAATTCCTTT-TAATTTACATGCATAATTATTCAAGGTA
129 TCTACAAAAAT-ACTTTCACTAATT-CTTTCTAATTTACATGCATAATTATTGAAGGTA
* *
5954993 TTTTTTAACAACAAACGCCTTCAATAATTTTCTCTTAATATTTTT-AGGATTATTAAAGACGTCT
1 TTTTTTAACAACAAATGCCTTCAATAATTTTCTCTTAATATTTTTGA-GATTATTAAAGGCGTCT
* * * * * * **
5955057 TCCAAT-AGAAAACGCTTTCAATATTTCACAACTCAGATTTTGAGATGGTTAGTGAAGGTGTTTA
65 TCCAGTGA-AAAACGCTTTCAATATTCCATAACTCA-AATTTGAAACGGTTAGTGAAGGCATTTA
*
5955121 TTCTACAAAAATACTTTCACTAATTCTTTCTAATATACATGCATAATTATTGAAGGTA
128 TTCTACAAAAATACTTTCACTAATTCTTTCTAATTTACATGCATAATTATTGAAGGTA
* * *
5955179 -TTTTTGATAATAAATGCCTTCAATAATTTTCTCTTAATATTTTTGAGATTATTAAAGGCGTCTT
1 TTTTTTAACAACAAATGCCTTCAATAATTTTCTCTTAATATTTTTGAGATTATTAAAGGCGTCTT
*
5955243 CCAGTGAAAAACGCTTTCAATATTCCATAACTCAAATTTGGAAACGGTTAGTAAAGGCATTTATT
66 CCAGTGAAAAACGCTTTCAATATTCCATAACTCAAATTT-GAAACGGTTAGTGAAGGCATTTATT
* * * * * *
5955308 CCAAAAAAAATACATTCACTAATTCCTTCTAATTTACGTACATAATTATTGA
130 -CTACAAAAATACTTTCACTAATTCTTTCTAATTTACATGCATAATTATTGA
5955360 CAGTGGTTGT
Statistics
Matches: 310, Mismatches: 47, Indels: 20
0.82 0.12 0.05
Matches are distributed among these distances:
184 4 0.01
185 116 0.37
186 186 0.60
187 4 0.01
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (185 bp):
TTTTTTAACAACAAATGCCTTCAATAATTTTCTCTTAATATTTTTGAGATTATTAAAGGCGTCTT
CCAGTGAAAAACGCTTTCAATATTCCATAACTCAAATTTGAAACGGTTAGTGAAGGCATTTATTC
TACAAAAATACTTTCACTAATTCTTTCTAATTTACATGCATAATTATTGAAGGTA
Found at i:5956067 original size:25 final size:24
Alignment explanation
Indices: 5956019--5956087 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 24
5956009 TCATATGTTG
*
5956019 AATGGTTTGGTGAAGGTGTTTCTA
1 AATGGTTTGATGAAGGTGTTTCTA
5956043 AATGGTTTGATGAATGGTGTTTCTA
1 AATGGTTTGATGAA-GGTGTTTCTA
* *
5956068 AGTGGTTTGCTGAAAGGTGT
1 AATGGTTTGATG-AAGGTGT
5956088 GTCTGAGCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
24 13 0.32
25 25 0.62
26 2 0.05
ACGTcount: A:0.22, C:0.04, G:0.33, T:0.41
Consensus pattern (24 bp):
AATGGTTTGATGAAGGTGTTTCTA
Found at i:5966372 original size:21 final size:21
Alignment explanation
Indices: 5966333--5966381 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
5966323 GCTTGGTGAA
*
5966333 AATATCAACTAATTGAAGCA-
1 AATATCAACTAATTCAAGCAC
5966353 AGATATCAAC-ATATTCAAGCAC
1 A-ATATCAACTA-ATTCAAGCAC
5966375 AATATCA
1 AATATCA
5966382 TATTTTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 2 0.08
21 22 0.88
22 1 0.04
ACGTcount: A:0.49, C:0.18, G:0.08, T:0.24
Consensus pattern (21 bp):
AATATCAACTAATTCAAGCAC
Found at i:5967452 original size:18 final size:18
Alignment explanation
Indices: 5967426--5967460 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
5967416 CTTGACATCT
*
5967426 ATTTGAAAACATTTAAAA
1 ATTTGAAAACATATAAAA
*
5967444 ATTTTAAAACATATAAA
1 ATTTGAAAACATATAAA
5967461 TGCCAATAGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (18 bp):
ATTTGAAAACATATAAAA
Found at i:5969815 original size:15 final size:16
Alignment explanation
Indices: 5969786--5969820 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
5969776 TTATAATCTA
5969786 AAAAAAATTAATTAATT
1 AAAAAAATT-ATTAATT
5969803 AAAAAAATT-TTAATT
1 AAAAAAATTATTAATT
5969818 AAA
1 AAA
5969821 GTTTTAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
17 9 0.50
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAAAAATTATTAATT
Found at i:5971037 original size:3 final size:3
Alignment explanation
Indices: 5971029--5971078 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
5971019 AATGCTTAAG
* * *
5971029 ATA ATA ATA ATA ATA GTA ATA GATA ATA ATA ATA GTA AT- AGA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
5971074 ATA AT
1 ATA AT
5971079 TATTATTTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 1 0.03
3 35 0.90
4 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:5971056 original size:19 final size:20
Alignment explanation
Indices: 5971031--5971078 Score: 89
Period size: 19 Copynumber: 2.5 Consensus size: 20
5971021 TGCTTAAGAT
5971031 AATAATAATAATAGTAATAG
1 AATAATAATAATAGTAATAG
5971051 -ATAATAATAATAGTAATAG
1 AATAATAATAATAGTAATAG
5971070 AATAATAAT
1 AATAATAAT
5971079 TATTATTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.70
20 8 0.30
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.31
Consensus pattern (20 bp):
AATAATAATAATAGTAATAG
Found at i:5971285 original size:18 final size:19
Alignment explanation
Indices: 5971254--5971297 Score: 81
Period size: 18 Copynumber: 2.4 Consensus size: 19
5971244 AAATTCACCT
5971254 AGATGTTGGGGATTTTTAG
1 AGATGTTGGGGATTTTTAG
5971273 AGATGTT-GGGATTTTTAG
1 AGATGTTGGGGATTTTTAG
5971291 AGATGTT
1 AGATGTT
5971298 CGTATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (19 bp):
AGATGTTGGGGATTTTTAG
Found at i:5971304 original size:18 final size:18
Alignment explanation
Indices: 5971263--5971306 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
5971253 TAGATGTTGG
*
5971263 GGATTTTTAGAGATGTTG
1 GGATTTTTAGAGATGTTC
5971281 GGATTTTTAGAGATGTTC
1 GGATTTTTAGAGATGTTC
*
5971299 GTATTTTT
1 GGATTTTT
5971307 TTAAAAACGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.20, C:0.02, G:0.27, T:0.50
Consensus pattern (18 bp):
GGATTTTTAGAGATGTTC
Found at i:5971388 original size:15 final size:15
Alignment explanation
Indices: 5971368--5971450 Score: 80
Period size: 14 Copynumber: 5.4 Consensus size: 15
5971358 CTAAAACCTT
*
5971368 CTAAAATTCAAACCC
1 CTAAAATCCAAACCC
*
5971383 CTAAAATCTAAAACCC
1 CTAAAATC-CAAACCC
*
5971399 TTAAAAAATCCAAAACCC
1 CT--AAAATCC-AAACCC
5971417 C-AAAATCCAAACCC
1 CTAAAATCCAAACCC
*
5971431 C-AAAATCCAAATCC
1 CTAAAATCCAAACCC
5971445 CTAAAA
1 CTAAAA
5971451 CTCAAGCCCT
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
14 20 0.35
15 18 0.32
16 7 0.12
18 12 0.21
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.16
Consensus pattern (15 bp):
CTAAAATCCAAACCC
Found at i:5971479 original size:50 final size:51
Alignment explanation
Indices: 5971423--5971530 Score: 148
Period size: 51 Copynumber: 2.1 Consensus size: 51
5971413 ACCCCAAAAT
* * *
5971423 CCAAACCCCAAAATCCAAATCCCTAAAA-CTC-AAGCCCTTAAATCAAAACC
1 CCAAACCCCAAAACCCAAA-CCCTAAAATCTCTAAACCCTAAAATCAAAACC
*
5971473 CCAAACCCCAAAACCCAAACCCTAAAATCTCTAAACTCTAAAATCAAAACC
1 CCAAACCCCAAAACCCAAACCCTAAAATCTCTAAACCCTAAAATCAAAACC
*
5971524 CTAAACC
1 CCAAACC
5971531 TTTCATATCC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
49 8 0.16
50 21 0.41
51 22 0.43
ACGTcount: A:0.47, C:0.38, G:0.01, T:0.14
Consensus pattern (51 bp):
CCAAACCCCAAAACCCAAACCCTAAAATCTCTAAACCCTAAAATCAAAACC
Found at i:5971494 original size:14 final size:14
Alignment explanation
Indices: 5971403--5971491 Score: 72
Period size: 14 Copynumber: 6.2 Consensus size: 14
5971393 AAACCCTTAA
5971403 AAAATCCAAAACCCC
1 AAAATCC-AAACCCC
5971418 AAAATCCAAACCCC
1 AAAATCCAAACCCC
*
5971432 AAAATCCAAATCCCT
1 AAAATCCAAA-CCCC
* *
5971447 AAAA-CTCAAGCCCT
1 AAAATC-CAAACCCC
* *
5971461 TAAATCAAAACCCC
1 AAAATCCAAACCCC
** *
5971475 AAACCCCAAAACCC
1 AAAATCCAAACCCC
5971489 AAA
1 AAA
5971492 CCCTAAAATC
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
14 42 0.70
15 18 0.30
ACGTcount: A:0.51, C:0.38, G:0.01, T:0.10
Consensus pattern (14 bp):
AAAATCCAAACCCC
Found at i:5971499 original size:14 final size:15
Alignment explanation
Indices: 5971467--5971499 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
5971457 CCCTTAAATC
*
5971467 AAAACCCCAAACCCC
1 AAAACCCCAAACCCT
5971482 AAAA-CCCAAACCCT
1 AAAACCCCAAACCCT
5971496 AAAA
1 AAAA
5971500 TCTCTAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.55, C:0.42, G:0.00, T:0.03
Consensus pattern (15 bp):
AAAACCCCAAACCCT
Found at i:5976409 original size:22 final size:21
Alignment explanation
Indices: 5976376--5976417 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
5976366 TACTAAAATA
5976376 AAAATATAAAAATTATTATTAG
1 AAAATATAAAAATTA-TATTAG
5976398 AAAAT-TAGAAAATTATATTA
1 AAAATATA-AAAATTATATTA
5976418 AATATTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (21 bp):
AAAATATAAAAATTATATTAG
Found at i:5983228 original size:22 final size:22
Alignment explanation
Indices: 5983189--5983245 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
5983179 TATGTTTCTT
* *
5983189 TAAAAAAATATT-TTATAATATA
1 TAAAAAAATATTAATAAAAT-TA
5983211 CTAAAAAAATATTAATAAAATTA
1 -TAAAAAAATATTAATAAAATTA
5983234 TAAAATAAATAT
1 TAAAA-AAATAT
5983246 ATTATTATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 5 0.17
23 20 0.67
24 5 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
TAAAAAAATATTAATAAAATTA
Found at i:5986289 original size:58 final size:57
Alignment explanation
Indices: 5986167--5986442 Score: 320
Period size: 58 Copynumber: 4.7 Consensus size: 57
5986157 TATACAAGGG
* * * * *
5986167 AAAATTGATACTTTCAACTTTTTCTCAAAAAAAAAACTTTTTGATATTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTC---AAAAACACTTTTTGAAAATTTATTTTTAAGA
*
5986227 AAAATTGATACTTTCAACTTTTCCTCATAAAACCCTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCA-AAAACACTTTTTGAAAATTTATTTTTAAGA
* * * * * * **
5986285 AAAATTGATACTTTTAACTTTTTCTCAAAAATATTTTTTGGAAACTTTAATTTCGAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAACACTTTTT-GAAAATTTATTTTTAAGA
*
5986343 AAAATTGATACTTTCAACTTTTCCTCAAAAAACCCTTTTTGAAAATTTATTTTTAA-A
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAACACTTTTTGAAAATTTATTTTTAAGA
* * *
5986400 GAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTGAA
1 -AAAATTGATACTTTCAACTTTTCCTCAAAAACACTTTTTGAA
5986443 TTCTATTTAA
Statistics
Matches: 184, Mismatches: 28, Indels: 11
0.83 0.13 0.05
Matches are distributed among these distances:
57 24 0.13
58 125 0.68
59 10 0.05
60 25 0.14
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAACACTTTTTGAAAATTTATTTTTAAGA
Found at i:5986367 original size:116 final size:116
Alignment explanation
Indices: 5986166--5986440 Score: 394
Period size: 116 Copynumber: 2.4 Consensus size: 116
5986156 TTATACAAGG
* * * * * * *
5986166 GAAAATTGATACTTTCAACTTTTTCTCAAAAAAAAAACTTTTT-GATATTTTATTTTTAAGGAAA
1 GAAAATTGATACTTTCAACTTTTTCTC---AAAAATATTTTTTGGAAACTTTAATTTCAAGAAAA
*
5986230 ATTGATACTTTCAACTTTTCCTCATAAAACCCTTTTTGAAAATTTATTTTT-AA
63 ATTGATACTTTCAACTTTTCCTCAAAAAACCCTTTTTGAAAATTTATTTTTAAA
* *
5986283 GAAAAATTGATACTTTTAACTTTTTCTCAAAAATATTTTTTGGAAACTTTAATTTCGAGAAAAAT
1 G-AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGGAAACTTTAATTTCAAGAAAAAT
5986348 TGATACTTTCAACTTTTCCTCAAAAAACCCTTTTTGAAAATTTATTTTTAAA
65 TGATACTTTCAACTTTTCCTCAAAAAACCCTTTTTGAAAATTTATTTTTAAA
5986400 GAAAATTGATACTTTCAAC-TTTTCTTCAAAAATATTTTTTG
1 GAAAATTGATACTTTCAACTTTTTC-TCAAAAATATTTTTTG
5986441 AATTCTATTT
Statistics
Matches: 143, Mismatches: 11, Indels: 9
0.88 0.07 0.06
Matches are distributed among these distances:
115 16 0.11
116 98 0.69
117 4 0.03
118 25 0.17
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.44
Consensus pattern (116 bp):
GAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGGAAACTTTAATTTCAAGAAAAATT
GATACTTTCAACTTTTCCTCAAAAAACCCTTTTTGAAAATTTATTTTTAAA
Found at i:5986479 original size:14 final size:15
Alignment explanation
Indices: 5986450--5986501 Score: 56
Period size: 14 Copynumber: 3.5 Consensus size: 15
5986440 GAATTCTATT
*
5986450 TAAAGAAAAT-AAAA
1 TAAATAAAATGAAAA
5986464 T-AATAAAATGAAAA
1 TAAATAAAATGAAAA
5986478 TACGAATAAAA-GAAAA
1 TA--AATAAAATGAAAA
5986494 TAAATAAA
1 TAAATAAA
5986502 TAAAAAAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
13 7 0.21
14 12 0.36
16 7 0.21
17 7 0.21
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.17
Consensus pattern (15 bp):
TAAATAAAATGAAAA
Found at i:5987453 original size:3 final size:3
Alignment explanation
Indices: 5987447--5987583 Score: 52
Period size: 3 Copynumber: 44.7 Consensus size: 3
5987437 GAAAAAAAAG
** * *
5987447 TAA TAA TAA TAA TAA GGA TATA TAT TAA TAAA TAG TAA TAA TAAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA T-AA TAA TAA TAA T-AA TAA
* * * * *
5987495 -AA AAA TAA TAAA TACA TAA -GA TAA AAA TAA -AA GAA AAA T-A TATA
1 TAA TAA TAA T-AA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* *
5987539 TAAA TAA TAA TAA TAA CAA TAA T-A TATA TAAA TAA -AA TAA AAA TA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TA-A T-AA TAA TAA TAA TAA TA
5987584 TAAAATACAA
Statistics
Matches: 100, Mismatches: 19, Indels: 30
0.67 0.13 0.20
Matches are distributed among these distances:
2 11 0.11
3 64 0.64
4 23 0.23
5 2 0.02
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:5987525 original size:30 final size:29
Alignment explanation
Indices: 5987473--5987588 Score: 85
Period size: 30 Copynumber: 3.8 Consensus size: 29
5987463 GATATATATT
5987473 AATAAATAGTAATAATAAATAAAAAAATAATA
1 AATAAATA--AATAA-AAATAAAAAAATAATA
*
5987505 AATACATAAGATAAAAATAAAAGAAA-AATA
1 AATAAATAA-ATAAAAATAAAA-AAATAATA
* *
5987535 TATATAAAT-AATAATAATAACAATAAT-ATA
1 -A-ATAAATAAATAAAAATAA-AAAAATAATA
* *
5987565 TATAAATAAAATAAAAATATAAAA
1 AATAAAT-AAATAAAAATAAAAAA
5987589 TACAAAATTG
Statistics
Matches: 68, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
28 6 0.09
29 3 0.04
30 36 0.53
31 11 0.16
32 12 0.18
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.25
Consensus pattern (29 bp):
AATAAATAAATAAAAATAAAAAAATAATA
Found at i:5987526 original size:28 final size:28
Alignment explanation
Indices: 5987486--5987596 Score: 92
Period size: 28 Copynumber: 4.1 Consensus size: 28
5987476 AAATAGTAAT
5987486 AATAAATAA-AAAAATAATAA-ATACATA
1 AATAAA-AATAAAAATAATAATATACATA
*
5987513 AGATAAAAATAAAAGA-AA-AATATATATA
1 A-ATAAAAATAAAA-ATAATAATATACATA
* * * *
5987541 AATAATAATAATAACAATAATATATATA
1 AATAAAAATAAAAATAATAATATACATA
*
5987569 AAT-AAAATAAAAAT-ATAAAATACA-A
1 AATAAAAATAAAAATAATAATATACATA
5987594 AAT
1 AAT
5987597 TGAAAAAAGA
Statistics
Matches: 70, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
25 4 0.06
26 9 0.13
27 25 0.36
28 31 0.44
29 1 0.01
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (28 bp):
AATAAAAATAAAAATAATAATATACATA
Found at i:5987942 original size:44 final size:44
Alignment explanation
Indices: 5987791--5988838 Score: 952
Period size: 44 Copynumber: 23.8 Consensus size: 44
5987781 ATCAAGACTA
* ** *
5987791 CTCTAAGCAGAGGCTCAACGACTTTGAAAAACATAAA-CCATGCTC
1 CTCTAATCAGAGGCTCAACGACTTTG-AAAA-ATAAATAAAGGCTC
* *
5987836 CTCTAATCAGAGGCTCAATGACTTTG-AAAATAAATAAACAATGCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAAT--A-AAGGCTC
* *
5987882 CTTTAATCAGAGGCTTAACGACTTTGAAAAATAAATAAAGGCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGGCTC
* * *
5987926 TTCTAATCAGAGGCTTAACGACTTTG-GAAAT--ATAAATGGCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAA-GGCTC
* * * *
5987968 CTCTAATCAGAGGCTCAACAACTTTGGAAAGATAAACAAA-GCTT
1 CTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAATAAAGGCTC
** * * * *
5988012 CTCTAAAAAGAGGCTCAACGA-TTTTAAAGATGAATAAACATTGCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAAT-AA-A-GGCTC
* *
5988058 CTCTAATAAGAGGCTCAATGACTTTGAAAAATAAATAAA-GCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGGCTC
* * * *
5988101 CTCTAATCAGAGGTTTAGCGACTTTG-AAAA-ACATAAATGGCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAA-GGCTC
* *
5988144 CTCTATTCAGAGGCTCAATGACTTTGAAAAATAAATAAAGGCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGGCTC
* *
5988188 CTTTAATCAGAGGCTTAACGACTTTGGAAAAATAAAT---GGCTC
1 CTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAATAAAGGCTC
* * * *
5988230 CTCTAATCAGAGACTCAACAACTTTGGAAAGATAAACAAA-GCTC
1 CTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAATAAAGGCTC
* * *
5988274 CTCTAATCAGAGGCTCAACGATTTTGAAGATAAATAAA-CAATGCTC
1 CTCTAATCAGAGGCTCAACGACTTTG-A-A-AAATAAATAAAGGCTC
*
5988320 CTCTAATCAGAGGCTCAATGACTTTGAAAAATAAATAAA-GCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGGCTC
* * *
5988363 CTCTAATCAGAAGCTCAATGACTTTG-AAAA-ACATAAATGGCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAA-GGCTC
*** *
5988406 CTCTAATCAGAGGCTTCAACGACTTTTTTTTAAA-AAATAAAAGGGCTT
1 CTCTAATCAGAGGC-TCAACGAC--TTTGAAAAATAAAT-AAA-GGCTC
* * * *
5988454 CTCTAATCAGAGGCTCAACGACTTT-TAGAAGAAATAAATGGTTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAA-GGCTC
5988498 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGGCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGGCTC
*
5988542 CTCTAATCAGAGGCTTAACGACTTTGGAAAAATAAAT---GGCTC
1 CTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAATAAAGGCTC
* * * * * *
5988584 CTTTAATTAAAGGCTCAACAACTTTGGAAAGATAAACAAA-GCTC
1 CTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAATAAAGGCTC
** *
5988628 CTCTAATCAGAAACTCAATGACTTTGAAAAATAAATAAA-GCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGGCTC
* *
5988671 CTCTAATCAGAGGCTCAGCGACTTTG-AAAA-ACATAAATGGCTC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAA-GGCTC
* * * * * * * *
5988714 ATCTAATCAAAGGCTCAATGACTTT-TAGAAGAAAGAAATGGCTT
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAA-GGCTC
*
5988758 CTCTAATCAGAGGCTCAACGACTTTTAGAAGAAATAAAT--A-GCTT
1 CTCTAATCAGAGGCTCAACGAC-TTT-GAA-AAATAAATAAAGGCTC
*
5988802 CTCTAATCAAAGGCTCAACGACTTTGGAAAAATAAAT
1 CTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAAT
5988839 GGCTCCCTAA
Statistics
Matches: 837, Mismatches: 117, Indels: 101
0.79 0.11 0.10
Matches are distributed among these distances:
41 23 0.03
42 131 0.16
43 189 0.23
44 260 0.31
45 78 0.09
46 95 0.11
47 35 0.04
48 26 0.03
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (44 bp):
CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGGCTC
Found at i:5987992 original size:86 final size:85
Alignment explanation
Indices: 5987791--5988848 Score: 1065
Period size: 86 Copynumber: 12.1 Consensus size: 85
5987781 ATCAAGACTA
* ** * *
5987791 CTCTAAGCAGAGGCTCAACGACTTTGAAAAACATAAACCATGCTCCTCTAATCAGAGGCTCAATG
1 CTCTAATCAGAGGCTCAACGACTTTG-AAAA-ATAAATAAAGCTCCTCTAATCAGAGGCTCAACG
*
5987856 ACTTTGAAAATAAATAAACAAT-GCTC
64 ACTTTG-GAA-AAAT--A-AATGGCTC
* * * *
5987882 CTTTAATCAGAGGCTTAACGACTTTGAAAAATAAATAAAGGCTCTTCTAATCAGAGGCTTAACGA
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAA-GCTCCTCTAATCAGAGGCTCAACGA
*
5987947 CTTTGGAAATATAAATGGCTC
65 CTTTGGAAAAATAAATGGCTC
* * * * **
5987968 CTCTAATCAGAGGCTCAACAACTTTGGAAAGATAAACAAAGCTTCTCTAAAAAGAGGCTCAACGA
1 CTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAACGA
** *
5988033 -TTTTAAAGATGAATAAACATTGCTC
65 CTTTGGAA-A--AAT-AA-ATGGCTC
* * * * *
5988058 CTCTAATAAGAGGCTCAATGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGTTTAGCGAC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAACGAC
*
5988123 TTTGAAAAACATAAATGGCTC
66 TTTGGAAAA-ATAAATGGCTC
* * * *
5988144 CTCTATTCAGAGGCTCAATGACTTTGAAAAATAAATAAAGGCTCCTTTAATCAGAGGCTTAACGA
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAA-GCTCCTCTAATCAGAGGCTCAACGA
5988209 CTTTGGAAAAATAAATGGCTC
65 CTTTGGAAAAATAAATGGCTC
* * * *
5988230 CTCTAATCAGAGACTCAACAACTTTGGAAAGATAAACAAAGCTCCTCTAATCAGAGGCTCAACGA
1 CTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAACGA
* *
5988295 TTTTGAAGATAAATAAACAAT-GCTC
65 CTTTG--GA-AAA-ATA-AATGGCTC
* * *
5988320 CTCTAATCAGAGGCTCAATGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAAGCTCAATGAC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAACGAC
*
5988385 TTTGAAAAACATAAATGGCTC
66 TTTGGAAAA-ATAAATGGCTC
* ** *
5988406 CTCTAATCAGAGGCTTCAACGACTTTTTTTTAAAAAATAAA-AGGGCTTCTCTAATCAGAGGCTC
1 CTCTAATCAGAGGC-TCAACGAC-----TTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTC
* *
5988470 AACGACTTTTAGAAGAAATAAATGGTTC
60 AACGAC-TTTGGAA-AAATAAATGGCTC
*
5988498 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGGCTCCTCTAATCAGAGGCTTAACGA
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAA-GCTCCTCTAATCAGAGGCTCAACGA
5988563 CTTTGGAAAAATAAATGGCTC
65 CTTTGGAAAAATAAATGGCTC
* * * * * * ** *
5988584 CTTTAATTAAAGGCTCAACAACTTTGGAAAGATAAACAAAGCTCCTCTAATCAGAAACTCAATGA
1 CTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAACGA
*
5988649 CTTT-GAAAAATAAATAAAGCTC
65 CTTTGGAAAAATAAAT--GGCTC
* * * * *
5988671 CTCTAATCAGAGGCTCAGCGACTTTGAAAAACATAAAT--GGCTCATCTAATCAAAGGCTCAATG
1 CTCTAATCAGAGGCTCAACGACTTTG-AAAA-ATAAATAAAGCTCCTCTAATCAGAGGCTCAACG
* * *
5988734 ACTTTTAGAAGAAAGAAATGGCTT
64 AC-TTTGGAA-AAATAAATGGCTC
* *
5988758 CTCTAATCAGAGGCTCAACGACTTTTAGAAGAAATAAAT--AGCTTCTCTAATCAAAGGCTCAAC
1 CTCTAATCAGAGGCTCAACGAC-TTT-GAA-AAATAAATAAAGCTCCTCTAATCAGAGGCTCAAC
5988821 GACTTTGGAAAAATAAATGGCTC
63 GACTTTGGAAAAATAAATGGCTC
5988844 C-CTAA
1 CTCTAA
5988849 CAATCATGTC
Statistics
Matches: 812, Mismatches: 116, Indels: 84
0.80 0.11 0.08
Matches are distributed among these distances:
85 26 0.03
86 278 0.34
87 145 0.18
88 75 0.09
89 94 0.12
90 93 0.11
91 58 0.07
92 41 0.05
93 2 0.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (85 bp):
CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAACGAC
TTTGGAAAAATAAATGGCTC
Found at i:5988139 original size:176 final size:170
Alignment explanation
Indices: 5987791--5988848 Score: 1065
Period size: 176 Copynumber: 6.0 Consensus size: 170
5987781 ATCAAGACTA
* ** * *
5987791 CTCTAAGCAGAGGCTCAACGACTTTGAAAAACATAAACCATGCTCCTCTAATCAGAGGCTCAATG
1 CTCTAATCAGAGGCTCAACGACTTTG-AAAA-ATAAATAAAGCTCCTCTAATCAGAGGCTCAACG
* * *
5987856 ACTTTGAAAATAAATAAACAAT-GCTCCTTTAATCAGAGGCTTAACGACTTTGAAAAATAAATAA
64 ACTTTG-AAA-AAAT--A-AATGGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAACAA
* * * *
5987920 AGGCTCTTCTAATCAGAGGCTTAACGACTTTGGAAATATAAATGGCTC
124 A-GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAAATAAATGGCTC
* * * * **
5987968 CTCTAATCAGAGGCTCAACAACTTTGGAAAGATAAACAAAGCTTCTCTAAAAAGAGGCTCAACGA
1 CTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAACGA
* * * * *
5988033 -TTTTAAAGATGAATAAACATTGCTCCTCTAATAAGAGGCTCAATGACTTTGAAAAATAAATAAA
65 CTTTGAAA-A--AAT-AA-ATGGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAACAAA
* * *
5988097 GCTCCTCTAATCAGAGGTTTAGCGACTTTGAAAAACATAAATGGCTC
125 GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAA-ATAAATGGCTC
* * * *
5988144 CTCTATTCAGAGGCTCAATGACTTTGAAAAATAAATAAAGGCTCCTTTAATCAGAGGCTTAACGA
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAA-GCTCCTCTAATCAGAGGCTCAACGA
* * * *
5988209 CTTTGGAAAAATAAATGGCTCCTCTAATCAGAGACTCAACAACTTTGGAAAGATAAACAAAGCTC
65 CTTTGAAAAAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAACAAAGCTC
*
5988274 CTCTAATCAGAGGCTCAACGATTTTGAAGATAAATAAACAAT-GCTC
129 CTCTAATCAGAGGCTCAACGACTTTGAA-A-AAAT--A-AATGGCTC
* * *
5988320 CTCTAATCAGAGGCTCAATGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAAGCTCAATGAC
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAACGAC
* *
5988385 TTTGAAAAACATAAATGGCTCCTCTAATCAGAGGCTTCAACGACTTTTTTTTAAAAAATAAA-AG
66 TTTGAAAAA-ATAAATGGCTCCTCTAATCAGAGGC-TCAACGAC-----TTTGAAAAATAAACAA
* * * *
5988449 GGCTTCTCTAATCAGAGGCTCAACGACTTTTAGAAGAAATAAATGGTTC
124 AGCTCCTCTAATCAGAGGCTCAACGAC-TTT-GAAAAAATAAATGGCTC
*
5988498 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGGCTCCTCTAATCAGAGGCTTAACGA
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAA-GCTCCTCTAATCAGAGGCTCAACGA
* * * * * *
5988563 CTTTGGAAAAATAAATGGCTCCTTTAATTAAAGGCTCAACAACTTTGGAAAGATAAACAAAGCTC
65 CTTTGAAAAAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAACAAAGCTC
** * *
5988628 CTCTAATCAGAAACTCAATGACTTTG-AAAAATAAATAAAGCTC
129 CTCTAATCAGAGGCTCAACGACTTTGAAAAAATAAAT--GGCTC
* * * * *
5988671 CTCTAATCAGAGGCTCAGCGACTTTGAAAAACATAAAT--GGCTCATCTAATCAAAGGCTCAATG
1 CTCTAATCAGAGGCTCAACGACTTTG-AAAA-ATAAATAAAGCTCCTCTAATCAGAGGCTCAACG
* * * *
5988734 ACTTTTAGAAGAAAGAAATGGCTTCTCTAATCAGAGGCTCAACGACTTTTAGAAGAAAT-AA-AT
64 AC-TTT-GAAAAAATAAATGGCTCCTCTAATCAGAGGCTCAACGAC-TTT-GAA-AAATAAACAA
* * *
5988797 AGCTTCTCTAATCAAAGGCTCAACGACTTTGGAAAAATAAATGGCTC
124 AGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAAATAAATGGCTC
5988844 C-CTAA
1 CTCTAA
5988849 CAATCATGTC
Statistics
Matches: 743, Mismatches: 102, Indels: 77
0.81 0.11 0.08
Matches are distributed among these distances:
171 9 0.01
172 57 0.08
173 89 0.12
174 96 0.13
175 105 0.14
176 194 0.26
177 51 0.07
178 65 0.09
179 31 0.04
180 29 0.04
181 11 0.01
182 6 0.01
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (170 bp):
CTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAACGAC
TTTGAAAAAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAACAAAGCTCCT
CTAATCAGAGGCTCAACGACTTTGAAAAAATAAATGGCTC
Found at i:5988312 original size:262 final size:263
Alignment explanation
Indices: 5987799--5988827 Score: 1183
Period size: 262 Copynumber: 3.9 Consensus size: 263
5987789 TACTCTAAGC
* * *
5987799 AGAGGCTCAACGACTTTGAAAAACATAAACCATGCTCCTCTAATCAGAGGCTCAATGACTTTGAA
1 AGAGGCTCAACGACTTTG-AAAA-ATAAACAAAGCTCCTCTAATCAGAAGCTCAATGACTTTGAA
* * * *
5987864 AATAAATAAACAAT-GCTCCTTTAATCAGAGGCTTAACGACTTTGAAAAATAAATAAA-GGCTCT
64 AA-ACAT--A-AATGGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAA-AAATAAAGGGCTCC
* * *
5987927 TCTAATCAGAGGCTTAACGAC-TTTGGAA-ATATAAATGGCTCCTCTAATCAGAGGCTCAACAAC
124 TCTAATCAGAGGCTCAACGACTTTTAGAAGAAATAAATGGCTCCTCTAATCAGAGGCTCAACAAC
* ** * * *
5987990 TTTGGAAAGATAAACAAAGCTTCTCTAAAAAGAGGCTCAACGATTTTAAAGATGAATAAACATTG
189 TTT-GAAAGATAAACAAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAGATAAATAAACATTG
5988055 CTCCTCTAATA
253 CTCCTCTAATA
* * * * * **
5988066 AGAGGCTCAATGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGTTTAGCGACTTTGAAAA
1 AGAGGCTCAACGACTTTGAAAAATAAACAAAGCTCCTCTAATCAGAAGCTCAATGACTTTGAAAA
* * *
5988131 ACATAAATGGCTCCTCTATTCAGAGGCTCAATGACTTTGAAAAATAAATAAA-GGCTCCTTTAAT
66 ACATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAA-AAATAAAGGGCTCCTCTAAT
* * *
5988195 CAGAGGCTTAACGAC-TTTGGAA-AAATAAATGGCTCCTCTAATCAGAGACTCAACAACTTTGGA
130 CAGAGGCTCAACGACTTTTAGAAGAAATAAATGGCTCCTCTAATCAGAGGCTCAACAACTTT-GA
* *
5988258 AAGATAAACAAAGCTCCTCTAATCAGAGGCTCAACGATTTTGAAGATAAATAAACAATGCTCCTC
194 AAGATAAACAAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAGATAAATAAACATTGCTCCTC
*
5988323 TAATC
259 TAATA
* *
5988328 AGAGGCTCAATGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAAGCTCAATGACTTTGAAAA
1 AGAGGCTCAACGACTTTGAAAAATAAACAAAGCTCCTCTAATCAGAAGCTCAATGACTTTGAAAA
*** *
5988393 ACATAAATGGCTCCTCTAATCAGAGGCTTCAACGACTTTTTTTTAAAAAATAAAAGGGCTTCTCT
66 ACATAAATGGCTCCTCTAATCAGAGGC-TCAACGAC--TTTGAAAAAAAAT-AAAGGGCTCCTCT
* *
5988458 AATCAGAGGCTCAACGACTTTTAGAAGAAATAAATGGTTCCTCTAATCAGAGGCTCAACGACTTT
127 AATCAGAGGCTCAACGACTTTTAGAAGAAATAAATGGCTCCTCTAATCAGAGGCTCAACAACTTT
* * * * *
5988523 GAAAAATAAATAAAGGCTCCTCTAATCAGAGGCTTAACGACTTTG--GAAAAAT-AA-ATGGCTC
192 GAAAGATAAACAAA-GCTCCTCTAATCAGAGGCTCAACGACTTTGAAGATAAATAAACATTGCTC
*
5988584 CTTTAATTA
256 CTCTAA-TA
* * *
5988593 A-AGGCTCAACAACTTTGGAAAGATAAACAAAGCTCCTCTAATCAGAAACTCAATGACTTTG-AA
1 AGAGGCTCAACGACTTT-GAAAAATAAACAAAGCTCCTCTAATCAGAAGCTCAATGACTTTGAAA
* * * * *
5988656 AA-ATAAATAAAGCTCCTCTAATCAGAGGCTCAGCGACTTTG-AAAAACATAAATGGCTCATCTA
65 AACATAAAT--GGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAAAAATAAAGGGCTCCTCTA
* * * * * *
5988719 ATCAAAGGCTCAATGACTTTTAGAAGAAAGAAATGGCTTCTCTAATCAGAGGCTCAACGACTTTT
128 ATCAGAGGCTCAACGACTTTTAGAAGAAATAAATGGCTCCTCTAATCAGAGGCTCAACAACTTTG
* *
5988784 AGAAGA-AATA-AATAGCTTCTCTAATCAAAGGCTCAACGACTTTG
193 A-AAGATAA-ACAA-AGCTCCTCTAATCAGAGGCTCAACGACTTTG
5988828 GAAAAATAAA
Statistics
Matches: 673, Mismatches: 73, Indels: 39
0.86 0.09 0.05
Matches are distributed among these distances:
260 102 0.15
261 14 0.02
262 263 0.39
263 13 0.02
264 41 0.06
265 108 0.16
266 34 0.05
267 35 0.05
268 63 0.09
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (263 bp):
AGAGGCTCAACGACTTTGAAAAATAAACAAAGCTCCTCTAATCAGAAGCTCAATGACTTTGAAAA
ACATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAAAAATAAAGGGCTCCTCTAATC
AGAGGCTCAACGACTTTTAGAAGAAATAAATGGCTCCTCTAATCAGAGGCTCAACAACTTTGAAA
GATAAACAAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAGATAAATAAACATTGCTCCTCTA
ATA
Found at i:5989851 original size:22 final size:22
Alignment explanation
Indices: 5989815--5989874 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
5989805 TGAGTCCTCC
5989815 TTTTTCATTCTT-TTTTTTC-TT
1 TTTTTCATT-TTCTTTTTTCATT
5989836 TTTTTCATTTTCTTTTTTCATT
1 TTTTTCATTTTCTTTTTTCATT
*
5989858 TTTTTCATTTTCATTTT
1 TTTTTCATTTTCTTTTT
5989875 CAAGCATAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 2 0.06
21 16 0.44
22 18 0.50
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTTTCATTTTCTTTTTTCATT
Found at i:5989875 original size:21 final size:21
Alignment explanation
Indices: 5989815--5989876 Score: 81
Period size: 21 Copynumber: 2.9 Consensus size: 21
5989805 TGAGTCCTCC
*
5989815 TTTTTCATTCTTTTTTTTC-TT
1 TTTTTCATT-TTCTTTTTCATT
5989836 TTTTTCATTTTCTTTTTTCATT
1 TTTTTCATTTTC-TTTTTCATT
*
5989858 TTTTTCATTTTCATTTTCA
1 TTTTTCATTTTCTTTTTCA
5989877 AGCATAGTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.05
21 21 0.57
22 14 0.38
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTTCATTTTCTTTTTCATT
Found at i:6000333 original size:59 final size:61
Alignment explanation
Indices: 6000269--6000431 Score: 260
Period size: 63 Copynumber: 2.7 Consensus size: 61
6000259 TTTGTACAAG
*
6000269 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT-GAAATTTTAATTTC-AA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAACTTTAATTTCGAA
6000328 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATATATTTTTGGAAACTTTAATTTCGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAT-T-T-TTTTTGGAAACTTTAATTTCGAA
*
6000392 -GAAAATTGATACTTTCAACTTTTCCACAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
6000432 GAATTCTATT
Statistics
Matches: 97, Mismatches: 2, Indels: 9
0.90 0.02 0.08
Matches are distributed among these distances:
59 36 0.37
60 4 0.04
61 2 0.02
62 6 0.06
63 47 0.48
64 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.07, T:0.42
Consensus pattern (61 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAACTTTAATTTCGAA
Found at i:6000457 original size:5 final size:5
Alignment explanation
Indices: 6000447--6000514 Score: 54
Period size: 5 Copynumber: 13.8 Consensus size: 5
6000437 CTATTTAAAG
* *
6000447 AAAAT AAAAT --AAT AAAAT GAAAAT ACGAAT -AAAG AAAAT AAAAT -AAAT
1 AAAAT AAAAT AAAAT AAAAT -AAAAT A-AAAT AAAAT AAAAT AAAAT AAAAT
*
6000495 AAAAAT AAATT AAAAT AAAA
1 -AAAAT AAAAT AAAAT AAAA
6000515 AAACTAAGCA
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
3 3 0.06
4 6 0.12
5 29 0.58
6 12 0.24
ACGTcount: A:0.75, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:6000488 original size:9 final size:9
Alignment explanation
Indices: 6000442--6000517 Score: 50
Period size: 9 Copynumber: 8.0 Consensus size: 9
6000432 GAATTCTATT
*
6000442 TAAAGAAAA
1 TAAATAAAA
*
6000451 TAAA-ATAA
1 TAAATAAAA
6000459 TAAAATGAAAA
1 T-AAAT-AAAA
6000470 TACGAATAAAGA
1 TA--AATAAA-A
6000482 -AAATAAAA
1 TAAATAAAA
6000490 TAAATAAAAA
1 TAAAT-AAAA
6000500 TAAATTAAAA
1 TAAA-TAAAA
6000510 TAAA-AAAA
1 TAAATAAAA
6000518 CTAAGCAAAC
Statistics
Matches: 56, Mismatches: 2, Indels: 19
0.73 0.03 0.25
Matches are distributed among these distances:
8 9 0.16
9 17 0.30
10 17 0.30
11 9 0.16
12 4 0.07
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.18
Consensus pattern (9 bp):
TAAATAAAA
Found at i:6000535 original size:3 final size:3
Alignment explanation
Indices: 6000529--6000563 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
6000519 TAAGCAAACC
*
6000529 TAA TAA TAA TAA T-A TAA TAA TAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6000564 AATGAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:6000548 original size:14 final size:14
Alignment explanation
Indices: 6000529--6000556 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6000519 TAAGCAAACC
6000529 TAATAATAATAATA
1 TAATAATAATAATA
6000543 TAATAATAATAATA
1 TAATAATAATAATA
6000557 AAAATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TAATAATAATAATA
Found at i:6001373 original size:8 final size:8
Alignment explanation
Indices: 6001360--6001397 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
6001350 TCTTTAGCCA
6001360 AAAAAAAT
1 AAAAAAAT
6001368 -AAAAAAT
1 AAAAAAAT
6001375 AAAAAAAT
1 AAAAAAAT
* *
6001383 CAAATAAT
1 AAAAAAAT
6001391 AAAAAAA
1 AAAAAAA
6001398 AATTAATAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAAAAT
Found at i:6001378 original size:16 final size:17
Alignment explanation
Indices: 6001359--6001398 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
6001349 ATCTTTAGCC
6001359 AAAAAAAAT-AAAAAAT
1 AAAAAAAATCAAAAAAT
*
6001375 -AAAAAAATCAAATAAT
1 AAAAAAAATCAAAAAAT
6001391 AAAAAAAA
1 AAAAAAAA
6001399 ATTAATAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 8 0.38
16 6 0.29
17 7 0.33
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAAAAAATCAAAAAAT
Found at i:6001411 original size:18 final size:18
Alignment explanation
Indices: 6001359--6001400 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
6001349 ATCTTTAGCC
6001359 AAAAAAAAT-AAA-AA-A
1 AAAAAAAATCAAATAATA
*
6001374 TAAAAAAATCAAATAATA
1 AAAAAAAATCAAATAATA
6001392 AAAAAAAAT
1 AAAAAAAAT
6001401 TAATAGATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 8 0.36
16 3 0.14
17 2 0.09
18 9 0.41
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAAAAAATCAAATAATA
Found at i:6001490 original size:18 final size:18
Alignment explanation
Indices: 6001436--6001492 Score: 53
Period size: 18 Copynumber: 2.9 Consensus size: 18
6001426 AAAAAATTAA
*
6001436 CAGATAAATTATAAATAAT
1 CAGATAAA-TATATATAAT
6001455 -AGATAAATTATAATATATAAT
1 CAGAT-AA--AT-ATATATAAT
6001476 CAGATAAATATATATAA
1 CAGATAAATATATATAA
6001493 ATATTAACAG
Statistics
Matches: 32, Mismatches: 1, Indels: 11
0.73 0.02 0.25
Matches are distributed among these distances:
18 12 0.38
19 4 0.12
20 1 0.03
21 11 0.34
22 4 0.12
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (18 bp):
CAGATAAATATATATAAT
Found at i:6001518 original size:3 final size:3
Alignment explanation
Indices: 6001512--6001624 Score: 63
Period size: 3 Copynumber: 37.0 Consensus size: 3
6001502 GAAAAAAAAG
** * *
6001512 TAA TAA TAA TAA TAA GGA TATA TAT TAA TAAA TAG TAA TAA TAAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA T-AA TAA TAA TAA T-AA TAA
* * * * *
6001560 TAAA TAA TAAA TACA TAA -GA TAA AAA TAA -AA GAA AAA TTA T-A TAA
1 T-AA TAA T-AA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6001605 -AA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
6001625 ATATATATAT
Statistics
Matches: 85, Mismatches: 15, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
2 7 0.08
3 60 0.71
4 18 0.21
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:6001636 original size:12 final size:10
Alignment explanation
Indices: 6001446--6001646 Score: 87
Period size: 10 Copynumber: 19.5 Consensus size: 10
6001436 CAGATAAATT
6001446 ATAAATAATA
1 ATAAATAATA
*
6001456 GATAAATTATA
1 -ATAAATAATA
*
6001467 ATATATAATCA
1 ATAAATAAT-A
6001478 GATAAAT-ATA
1 -ATAAATAATA
*
6001488 TATAAATATTA
1 -ATAAATAATA
* * *
6001499 ACAGAAAAAAA
1 ATA-AATAATA
6001510 AGT-AATAATA
1 A-TAAATAATA
**
6001520 AT-AATAAGG
1 ATAAATAATA
* *
6001529 ATATATATTA
1 ATAAATAATA
*
6001539 ATAAATAGTA
1 ATAAATAATA
6001549 AT-AATAAATA
1 ATAAAT-AATA
6001559 ATAAATAATAA
1 ATAAATAAT-A
*
6001570 ATACATAAGATA
1 ATAAAT-A-ATA
6001582 A-AAATAA-A
1 ATAAATAATA
*
6001590 AGAAA-AATTA
1 ATAAATAA-TA
6001600 TATAAAATAATA
1 -AT-AAATAATA
6001612 AT-AATAATA
1 ATAAATAATA
6001621 ATAAATATATA
1 ATAAATA-ATA
6001632 TATAAATAA-A
1 -ATAAATAATA
6001642 ATAAA
1 ATAAA
6001647 AATGTAAAAT
Statistics
Matches: 145, Mismatches: 25, Indels: 42
0.68 0.12 0.20
Matches are distributed among these distances:
8 4 0.03
9 29 0.20
10 50 0.34
11 38 0.26
12 20 0.14
13 4 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (10 bp):
ATAAATAATA
Found at i:6001645 original size:27 final size:28
Alignment explanation
Indices: 6001537--6001640 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 28
6001527 GGATATATAT
6001537 TAATAAATAGTA-ATAATAAATAAT-AAA
1 TAATAAATA-TATATAATAAATAATAAAA
*
6001564 TAATAAATACATA-AGATAAA-AATAAAA
1 TAATAAATATATATA-ATAAATAATAAAA
* *
6001591 GAA-AAAT-TATATAAAATAATAATAATAA
1 TAATAAATATATATAATA-AATAATAA-AA
6001619 TAATAAATATATAT-ATAAATAA
1 TAATAAATATATATAATAAATAA
6001641 AATAAAAATG
Statistics
Matches: 62, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
25 5 0.08
26 12 0.19
27 25 0.40
28 9 0.15
29 6 0.10
30 5 0.08
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (28 bp):
TAATAAATATATATAATAAATAATAAAA
Found at i:6004123 original size:45 final size:43
Alignment explanation
Indices: 6003849--6004122 Score: 290
Period size: 41 Copynumber: 6.4 Consensus size: 43
6003839 GTTGTGGTAT
* * * *
6003849 CTCTGTTTAGAGGAGCTTTGTTTATTTTTCAAAAGTTGTGGTGC
1 CTCTGTTTAGAGGAGCTTTATTTATTTTTC-AAAGTCGTTGAGC
* * *
6003893 CTCTGTTTAGAAGAGCTTTATTTATTATTCAAAGTCGTTGAAC
1 CTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGC
* * *
6003936 CTCTGATTATAGGAGC-TT-TTTATTTTTCAAAGTCTTTGAGC
1 CTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGC
* *
6003977 CTTTGTTTAGAGGAGC--CATTTATTTTTCAAAGTCGTTGAGC
1 CTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGC
* * * *
6004018 CTCTATTTAGAGGAGC--CATTTATTTTCCAAAGTCATTGAGC
1 CTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGC
* *
6004059 CTCTGATTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCGTTGAGC
1 CTCTGTTTAGAGGAGCTTTATTTAT-TTT-TCAAAGTCGTTGAGC
* * *
6004104 CTCTGCTTAAAGAAGCTTT
1 CTCTGTTTAGAGGAGCTTT
6004123 GATCAAAATT
Statistics
Matches: 194, Mismatches: 31, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
41 106 0.55
42 2 0.01
43 27 0.14
44 30 0.15
45 29 0.15
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (43 bp):
CTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGC
Found at i:6004354 original size:24 final size:24
Alignment explanation
Indices: 6004327--6004410 Score: 105
Period size: 26 Copynumber: 3.3 Consensus size: 24
6004317 ATTATTACTA
6004327 TTATTATTTATTAATATATATTTT
1 TTATTATTTATTAATATATATTTT
* *
6004351 TTATTATTTATCTATTAACATATTTT
1 TTATTATTTAT-TAAT-ATATATTTT
*
6004377 ATTATTTATCTATTAATATATATTTT
1 -TTA-TTATTTATTAATATATATTTT
6004403 TTATTATT
1 TTATTATT
6004411 ACTTATCTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
24 15 0.30
25 6 0.12
26 16 0.32
27 6 0.12
28 7 0.14
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (24 bp):
TTATTATTTATTAATATATATTTT
Found at i:6004430 original size:22 final size:22
Alignment explanation
Indices: 6004404--6004455 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
6004394 ATATATTTTT
*
6004404 TATTATTACTTATCTATTCATA
1 TATTATTACTTATCTATTAATA
*
6004426 TATTATTATTTATCTATTAATA
1 TATTATTACTTATCTATTAATA
6004448 TATATATT
1 TAT-TATT
6004456 TATTTTTATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 23 0.85
23 4 0.15
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (22 bp):
TATTATTACTTATCTATTAATA
Found at i:6004456 original size:55 final size:52
Alignment explanation
Indices: 6004325--6004452 Score: 190
Period size: 53 Copynumber: 2.5 Consensus size: 52
6004315 TTATTATTAC
* *
6004325 TATTA-TTATTTATTAATATATATTTTTTATTA-TTTATCTATTAACATATTT
1 TATTATTTATCTATTAATATATATTTTTTATTATTTTATCTATT-ACATATAT
6004376 TATTATTTATCTATTAATATATATTTTTTATTATTACTTATCTATT-CATATAT
1 TATTATTTATCTATTAATATATATTTTTTATTATT--TTATCTATTACATATAT
6004429 TATTATTTATCTATTAATATATAT
1 TATTATTTATCTATTAATATATAT
6004453 ATTTATTTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
51 5 0.07
52 26 0.37
53 31 0.44
55 9 0.13
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (52 bp):
TATTATTTATCTATTAATATATATTTTTTATTATTTTATCTATTACATATAT
Found at i:6005302 original size:16 final size:16
Alignment explanation
Indices: 6005271--6005315 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
6005261 TATATATATA
*
6005271 TATTTTTATT-TTATT
1 TATTATTATTATTATT
6005286 TATTATTATTATTATT
1 TATTATTATTATTATT
6005302 TATTGATTA-TATTA
1 TATT-ATTATTATTA
6005316 GAATTATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 9 0.33
16 14 0.52
17 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (16 bp):
TATTATTATTATTATT
Found at i:6005343 original size:5 final size:5
Alignment explanation
Indices: 6005333--6005381 Score: 62
Period size: 5 Copynumber: 9.4 Consensus size: 5
6005323 TTAGTATTCC
* *
6005333 TTATT TTATT TTATTT TTATTT TTACT TTACT TTATT TTATT TTATT TT
1 TTATT TTATT TTA-TT TTA-TT TTATT TTATT TTATT TTATT TTATT TT
6005382 TTTGATTGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
5 30 0.73
6 11 0.27
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (5 bp):
TTATT
Found at i:6005488 original size:58 final size:58
Alignment explanation
Indices: 6005409--6005629 Score: 304
Period size: 58 Copynumber: 3.8 Consensus size: 58
6005399 AAAATTCCAA
* * *
6005409 AAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
1 AAAAAATATTTTCGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
*
6005467 AAAAAATATTTTCGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCT
1 AAAAAATATTTTCGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAG-TTTTCT
*
6005526 AAAAAATATTTTCGA-AGAAAAGTTGAAAGTATCAA-TTTTCTTTGAAAATAA-TTTTAT
1 AAAAAATATTTTCGAGA-AAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAAGTTTTCT
* *
6005583 AAAAAAGGGTGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAAAA---TATTTTCGAGAAAAAGTTGAAAGTATCAATTTTTCTTG
6005630 TACAAAAGCA
Statistics
Matches: 147, Mismatches: 8, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
57 11 0.07
58 53 0.36
59 49 0.33
60 28 0.19
61 6 0.04
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.38
Consensus pattern (58 bp):
AAAAAATATTTTCGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
Found at i:6005553 original size:59 final size:58
Alignment explanation
Indices: 6005409--6005629 Score: 302
Period size: 59 Copynumber: 3.8 Consensus size: 58
6005399 AAAATTCCAA
* * * *
6005409 AAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
1 AAAAAATATTTTCGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
6005467 AAAAAATATTTTCGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCT
1 AAAAAATATTTTCGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAG-TTTTCT
* *
6005526 AAAAAATATTTTCGA-AGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAA-TTTTAT
1 AAAAAATATTTTCGAGA-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
* * *
6005583 AAAAAAGGGTGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAAAA---TATTTTCGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
6005630 TACAAAAGCA
Statistics
Matches: 147, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
57 11 0.07
58 49 0.33
59 54 0.37
60 32 0.22
61 1 0.01
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.38
Consensus pattern (58 bp):
AAAAAATATTTTCGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
Found at i:6005812 original size:153 final size:155
Alignment explanation
Indices: 6005612--6006021 Score: 456
Period size: 153 Copynumber: 2.6 Consensus size: 155
6005602 AAAAAGTTGA
* * *
6005612 AAGTATCAATTTTTCTTGTACAAAAGCAATGAGTTTTTTAAGAGAAAAAGATTTATATTTAAAGC
1 AAGTATCAATTTTTCTTGTA-AAAAACAATGAGTTTTTGAAGAGAAAAAGATTTATATCTAAAGC
6005677 TGAATCATTTTTTTC-TT-TTTT-TTTTTGTTTCTTGAATTTTTTTTAATATTAAATAATCCGAC
65 TGAATCATTTTTTTCTTTCTTTTCTTTTTGTTTCTTGAATTTTTTTTAATATTAAATAATCCGAC
* *
6005739 GATAGAGCCTCTGCAAGTATCAATTT
130 AATAGAGCCTCTGCAAGAATCAATTT
6005765 AAGTATCAATTTTTCTTGTATAAAAACAATGAGTTTTTGAAGAGAAAAAGATTTATATCTAAAGC
1 AAGTATCAATTTTTCTTGTA-AAAAACAATGAGTTTTTGAAGAGAAAAAGATTTATATCTAAAGC
*
6005830 TGAATCATATTTTTTTCTTTCATTTTATTTCTTTTCCTTTTTGTTTCTTGAATTTTTTTTAATGT
65 TGAATC--A---TTTT-TTTC------TTTCTTTT-CTTTTTGTTTCTTGAATTTTTTTTAATAT
6005895 TAAATAATCCGACAATAGAGCCTCTGCAAGAATCAATTT
117 TAAATAATCCGACAATAGAGCCTCTGCAAGAATCAATTT
* * *
6005934 ---T-TC--TTATAC----AAAAAACATTGAGTTTTTGAAGA-AAAAA-ATTTATATCTAAAGCT
1 AAGTATCAATTTTTCTTGTAAAAAACAATGAGTTTTTGAAGAGAAAAAGATTTATATCTAAAGCT
* * *
6005987 GAATCATTTTTTTTTCTTC-TTTCATTTTATTTCTT
66 GAATCATTTTTTTCT-TTCTTTTCTTTTTGTTTCTT
6006022 TTCCTTTTTG
Statistics
Matches: 227, Mismatches: 13, Indels: 44
0.80 0.05 0.15
Matches are distributed among these distances:
143 11 0.05
144 4 0.02
145 3 0.01
150 3 0.01
151 4 0.02
153 67 0.30
154 1 0.00
155 1 0.00
156 21 0.09
157 5 0.02
158 25 0.11
159 5 0.02
163 4 0.02
165 2 0.01
166 3 0.01
167 4 0.02
169 64 0.28
ACGTcount: A:0.32, C:0.11, G:0.10, T:0.46
Consensus pattern (155 bp):
AAGTATCAATTTTTCTTGTAAAAAACAATGAGTTTTTGAAGAGAAAAAGATTTATATCTAAAGCT
GAATCATTTTTTTCTTTCTTTTCTTTTTGTTTCTTGAATTTTTTTTAATATTAAATAATCCGACA
ATAGAGCCTCTGCAAGAATCAATTT
Found at i:6005987 original size:156 final size:160
Alignment explanation
Indices: 6005769--6006084 Score: 516
Period size: 160 Copynumber: 2.0 Consensus size: 160
6005759 CAATTTAAGT
* *
6005769 ATCAATTTTTCTTGTATAAAAACAATGAGTTTTTGAAGAGAAAAAGATTTATATCTAAAGCTGAA
1 ATCAATTTTTCTTATAAAAAAACAATGAGTTTTTGAAGAGAAAAAGATTTATATCTAAAGCTGAA
6005834 TCA-TATTTTT-TTCTTTCATTTTATTTCTTTTCCTTTTTGTTTCTTGAA-TTTTTTTTAATGTT
66 TCATTATTTTTCTTCTTTCATTTTATTTCTTTTCCTTTTTGTTTCTTGAATTTTTTTTTAATGTT
*
6005896 AAATAATCCGACAATAGAGCCTCTGCAAGA
131 AAATAATCCAACAATAGAGCCTCTGCAAGA
*
6005926 ATCAATTTTTCTTATACAAAAAACATTGAGTTTTTGAAGA-AAAAA-ATTTATATCTAAAGCTGA
1 ATCAATTTTTCTTATA-AAAAAACAATGAGTTTTTGAAGAGAAAAAGATTTATATCTAAAGCTGA
*
6005989 ATCATTTTTTTTTCTTCTTTCATTTTATTTCTTTTCCTTTTTGTTTCTTGAATTTTTTTTTAATG
65 ATCA-TTATTTTTCTTCTTTCATTTTATTTCTTTTCCTTTTTGTTTCTTGAATTTTTTTTTAATG
**
6006054 TTAAATAATCCAATGATAGAGCCTCTGCAAG
129 TTAAATAATCCAACAATAGAGCCTCTGCAAG
6006085 TGAAATAGTA
Statistics
Matches: 147, Mismatches: 7, Indels: 7
0.91 0.04 0.04
Matches are distributed among these distances:
156 22 0.15
157 20 0.14
158 27 0.18
159 38 0.26
160 40 0.27
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (160 bp):
ATCAATTTTTCTTATAAAAAAACAATGAGTTTTTGAAGAGAAAAAGATTTATATCTAAAGCTGAA
TCATTATTTTTCTTCTTTCATTTTATTTCTTTTCCTTTTTGTTTCTTGAATTTTTTTTTAATGTT
AAATAATCCAACAATAGAGCCTCTGCAAGA
Found at i:6007049 original size:18 final size:17
Alignment explanation
Indices: 6007025--6007081 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
6007015 TTTAAAATAC
*
6007025 TTTAAATATATTATTTA
1 TTTAAATATATTAATTA
* *
6007042 TGTTAAATTTTGTTAATTA
1 T-TTAAA-TATATTAATTA
* *
6007061 TTTAAATATATCAATTT
1 TTTAAATATATTAATTA
6007078 TTTA
1 TTTA
6007082 TTTTAAAACA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
17 12 0.39
18 10 0.32
19 9 0.29
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (17 bp):
TTTAAATATATTAATTA
Found at i:6007129 original size:13 final size:13
Alignment explanation
Indices: 6007111--6007140 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
6007101 ATATCCAAAA
6007111 ATTATTATTTAAT
1 ATTATTATTTAAT
*
6007124 ATTATTATTTATT
1 ATTATTATTTAAT
6007137 ATTA
1 ATTA
6007141 ATATGATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
ATTATTATTTAAT
Found at i:6008362 original size:19 final size:18
Alignment explanation
Indices: 6008329--6008373 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
6008319 TTTCCTTATT
*
6008329 TATATTATTATTTTTTAA
1 TATATTATTAATTTTTAA
*
6008347 TATATTAATTAATTTTTAC
1 TATATT-ATTAATTTTTAA
6008366 T-TATTATT
1 TATATTATT
6008374 TTATAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 10 0.42
19 11 0.46
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TATATTATTAATTTTTAA
Found at i:6008560 original size:20 final size:21
Alignment explanation
Indices: 6008537--6008576 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
6008527 ATTTTTTGTA
6008537 TTATTATTAAA-TTTATTTTT
1 TTATTATTAAAGTTTATTTTT
*
6008557 TTATTTTTAAAGTTTATTTT
1 TTATTATTAAAGTTTATTTT
6008577 AAAAATTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (21 bp):
TTATTATTAAAGTTTATTTTT
Found at i:6009642 original size:19 final size:22
Alignment explanation
Indices: 6009618--6009662 Score: 69
Period size: 19 Copynumber: 2.2 Consensus size: 22
6009608 CGAATAAGAA
6009618 AAAAAAAGAAAA-A-AATAA-T
1 AAAAAAAGAAAAGATAATAATT
6009637 AAAAAAAGAAAAGATAATAATT
1 AAAAAAAGAAAAGATAATAATT
6009659 AAAA
1 AAAA
6009663 TATGATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 12 0.52
20 1 0.04
21 5 0.22
22 5 0.22
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (22 bp):
AAAAAAAGAAAAGATAATAATT
Found at i:6009896 original size:19 final size:19
Alignment explanation
Indices: 6009852--6009928 Score: 57
Period size: 19 Copynumber: 4.1 Consensus size: 19
6009842 TTTAAATACT
* *
6009852 ACATTAAATATTTTATTATA
1 ACATTAAAAATATT-TTATA
* *
6009872 A-TTTAAAAATAATTTATA
1 ACATTAAAAATATTTTATA
* *
6009890 ACATTAATAATTTTTTATA
1 ACATTAAAAATATTTTATA
* * *
6009909 AGATTATAAACATTTTATA
1 ACATTAAAAATATTTTATA
6009928 A
1 A
6009929 TGAAAATTTT
Statistics
Matches: 43, Mismatches: 13, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
18 6 0.14
19 36 0.84
20 1 0.02
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (19 bp):
ACATTAAAAATATTTTATA
Found at i:6010963 original size:27 final size:28
Alignment explanation
Indices: 6010928--6010994 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 28
6010918 AAAATATCCA
*
6010928 AAAAATTTAAAATCTAT-AATTTTTATT
1 AAAAATTTAAAATATATGAATTTTTATT
*
6010955 AAAAATTTAAAAAATATGAATTTTTATT
1 AAAAATTTAAAATATATGAATTTTTATT
*
6010983 -AAAATTCAAAAT
1 AAAAATTTAAAAT
6010995 TGCTTTAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 25 0.71
28 10 0.29
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (28 bp):
AAAAATTTAAAATATATGAATTTTTATT
Found at i:6014741 original size:25 final size:25
Alignment explanation
Indices: 6014707--6014762 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
6014697 ATTTATCGCT
6014707 TTCATTTTAGTTCAAGTCTGCAACA
1 TTCATTTTAGTTCAAGTCTGCAACA
6014732 TTCATTTTAGTTCAAGTCTGCAACA
1 TTCATTTTAGTTCAAGTCTGCAACA
6014757 TTCATT
1 TTCATT
6014763 GACTCGAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.43
Consensus pattern (25 bp):
TTCATTTTAGTTCAAGTCTGCAACA
Found at i:6015431 original size:32 final size:32
Alignment explanation
Indices: 6015384--6015445 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
6015374 TTTATAATTG
6015384 TACAATTATAATTTATAAGT-TGTCCAAAAATA
1 TACAATTATAATTTATAAGTAT-TCCAAAAATA
* * *
6015416 TACAATTGTATTTTATACGTATTCCAAAAA
1 TACAATTATAATTTATAAGTATTCCAAAAA
6015446 CTCATAGAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 25 0.96
33 1 0.04
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (32 bp):
TACAATTATAATTTATAAGTATTCCAAAAATA
Found at i:6018081 original size:9 final size:9
Alignment explanation
Indices: 6018067--6018105 Score: 69
Period size: 9 Copynumber: 4.2 Consensus size: 9
6018057 CTCATTCAAA
6018067 AATTTTATT
1 AATTTTATT
6018076 AATTTTATT
1 AATTTTATT
6018085 AATTTTATT
1 AATTTTATT
6018094 AATTTTAATT
1 AATTTT-ATT
6018104 AA
1 AA
6018106 AATTTTGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
9 24 0.83
10 5 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
AATTTTATT
Found at i:6018468 original size:205 final size:206
Alignment explanation
Indices: 6018135--6018700 Score: 856
Period size: 210 Copynumber: 2.7 Consensus size: 206
6018125 AATTTAATCA
* * * *
6018135 TATTGAAGATTTTCTATAAATATTCCAATACGCTGGTAATATTTTACAAAAAAAATCTTCTCACC
1 TATTGAAAATTTTTTATAAATACTCCAATACGCTGGTAGTA-TTTA-AAAAAAAATCTTCTCACC
* * * * *
6018200 TAGAGATTTCTTAAAGCATCTCTACTCGGAATACCTTTAGAATCTCATCATTGGAT-TAAATTT-
64 TAGAGATTTCGT-AGGCATCACTACTCGGAATACCTTT-GAATCTCATCATCGGATAAAAATTTC
6018263 CTTTTCTTCTTATTTTTATTACTTATATTTTTAATTTATTAATCAATTTTTATTTATTA-AAAAA
127 CTTTTCTTCTTATTTTTATTACTTATA-TTTTAATTTATTAATCAATTTTTATTTATTATAAAAA
6018327 AAGAAAATCTTTACTG
191 AAGAAAATCTTTACTG
*
6018343 TATTGAAAATTTTTTATAAATACTCCAATACGCTGGTAGTACTTAAAAAAAAATCTTCTCACCTA
1 TATTGAAAATTTTTTATAAATACTCCAATACGCTGGTAGTATTTAAAAAAAAATCTTCTCACCTA
*
6018408 GAGATTTCGTAGGCATCACTACTCGGAATACCTTTGAATCTCATCATCGGATAAAAATTTCCTCT
66 GAGATTTCGTAGGCATCACTACTCGGAATACCTTTGAATCTCATCATCGGATAAAAATTTCCTTT
*
6018473 TC-TCTTATTTTTTATTAGTTATATTTTAATTTATTAATCAATTTTTATTTATTATTTTTAAAAA
131 TCTTCTTA-TTTTTATTACTTATATTTTAATTTATTAATCAATTTTTATTTATTA----TAAAAA
6018537 AAGAAAATCTTTACTG
191 AAGAAAATCTTTACTG
*
6018553 TATTGAAAATTTTTTATAAATACTCCAATACGCTGGTAGTATTTTAAAAAAAATCTTCTCACCTA
1 TATTGAAAATTTTTTATAAATACTCCAATACGCTGGTAGTATTTAAAAAAAAATCTTCTCACCTA
*
6018618 GAGATTTCGTAGGCATCACTACTCGGAATACCTTTGAATCTCATCGTCGGATAAAAATTTCCTTT
66 GAGATTTCGTAGGCATCACTACTCGGAATACCTTTGAATCTCATCATCGGATAAAAATTTCC-TT
*
6018683 TTCTT-TCATTTTT-TTACT
130 TTCTTCTTATTTTTATTACT
6018701 ACTTTAGTAT
Statistics
Matches: 330, Mismatches: 18, Indels: 19
0.90 0.05 0.05
Matches are distributed among these distances:
204 16 0.05
205 65 0.20
206 48 0.15
207 3 0.01
208 37 0.11
209 4 0.01
210 150 0.45
211 6 0.02
212 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.43
Consensus pattern (206 bp):
TATTGAAAATTTTTTATAAATACTCCAATACGCTGGTAGTATTTAAAAAAAAATCTTCTCACCTA
GAGATTTCGTAGGCATCACTACTCGGAATACCTTTGAATCTCATCATCGGATAAAAATTTCCTTT
TCTTCTTATTTTTATTACTTATATTTTAATTTATTAATCAATTTTTATTTATTATAAAAAAAGAA
AATCTTTACTG
Found at i:6018974 original size:14 final size:15
Alignment explanation
Indices: 6018935--6018977 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
6018925 CGGTCAACTC
*
6018935 CTGGTTCGGTTC-GA
1 CTGGTTCGGTTCGGT
6018949 C-GGTTCGGTTCGGT
1 CTGGTTCGGTTCGGT
6018963 CTGGTT-GGTTCGGT
1 CTGGTTCGGTTCGGT
6018977 C
1 C
6018978 CGGCGGTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 10 0.38
14 12 0.46
15 4 0.15
ACGTcount: A:0.02, C:0.21, G:0.40, T:0.37
Consensus pattern (15 bp):
CTGGTTCGGTTCGGT
Found at i:6018976 original size:32 final size:32
Alignment explanation
Indices: 6018936--6019028 Score: 141
Period size: 32 Copynumber: 2.9 Consensus size: 32
6018926 GGTCAACTCC
* *
6018936 TGGTTCGGTTCGACGGTTCGGTTCGGTCTGGT
1 TGGTTCGGTCCGGCGGTTCGGTTCGGTCTGGT
* *
6018968 TGGTTCGGTCCGGCGGTTCAGTTCGATCTGGT
1 TGGTTCGGTCCGGCGGTTCGGTTCGGTCTGGT
*
6019000 TGGTTTGGTCCGGCGGTTCGGTTCGGTCT
1 TGGTTCGGTCCGGCGGTTCGGTTCGGTCT
6019029 AATCAGACCG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.03, C:0.20, G:0.40, T:0.37
Consensus pattern (32 bp):
TGGTTCGGTCCGGCGGTTCGGTTCGGTCTGGT
Found at i:6019253 original size:8 final size:8
Alignment explanation
Indices: 6019240--6019265 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
6019230 AGAAAAAAAA
6019240 AGGGAGAG
1 AGGGAGAG
6019248 AGGGAGAG
1 AGGGAGAG
6019256 AGGGAGAG
1 AGGGAGAG
6019264 AG
1 AG
6019266 AGAGCTCTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (8 bp):
AGGGAGAG
Found at i:6019864 original size:4 final size:4
Alignment explanation
Indices: 6019855--6019888 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
6019845 TTTTGTTTCT
*
6019855 TTTG TTTG TTTA TTTG TTTG TTT- TTTG TTTG TTT
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTT
6019889 TGTTAAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.03, C:0.00, G:0.18, T:0.79
Consensus pattern (4 bp):
TTTG
Found at i:6019872 original size:12 final size:11
Alignment explanation
Indices: 6019835--6019889 Score: 67
Period size: 11 Copynumber: 4.7 Consensus size: 11
6019825 CCCCTTGACT
6019835 TTTGTTTTATT-
1 TTTGTTTT-TTG
6019846 TTTGTTTCTTTTG
1 TTTG-TT-TTTTG
6019859 TTTGTTTATTTG
1 TTTGTTT-TTTG
6019871 TTTGTTTTTTG
1 TTTGTTTTTTG
6019882 TTTGTTTT
1 TTTGTTTT
6019890 GTTAAATATT
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
11 17 0.43
12 17 0.43
13 6 0.15
ACGTcount: A:0.04, C:0.02, G:0.15, T:0.80
Consensus pattern (11 bp):
TTTGTTTTTTG
Found at i:6019891 original size:9 final size:9
Alignment explanation
Indices: 6019845--6019892 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
6019835 TTTGTTTTAT
*
6019845 TTTTGTTTC
1 TTTTGTTTG
6019854 TTTTGTTTG
1 TTTTGTTTG
*
6019863 -TTTATTTG
1 TTTTGTTTG
6019871 -TTTG-TT-
1 TTTTGTTTG
6019877 TTTTGTTTG
1 TTTTGTTTG
6019886 TTTTGTT
1 TTTTGTT
6019893 AAATATTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
7 6 0.18
8 12 0.36
9 15 0.45
ACGTcount: A:0.02, C:0.02, G:0.17, T:0.79
Consensus pattern (9 bp):
TTTTGTTTG
Found at i:6021096 original size:25 final size:27
Alignment explanation
Indices: 6021066--6021137 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 27
6021056 TATTTTGGTA
6021066 ATTTTTTATAAATAATATATTAA-TAT
1 ATTTTTTATAAATAATATATTAATTAT
*
6021092 ATTTTTTTCAATAAA-AATATATTAATTTT
1 A-TTTTTT--ATAAATAATATATTAATTAT
6021121 A-TTTTTATAAAATAATA
1 ATTTTTTAT-AAATAATA
6021138 ATTTATGTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
25 2 0.05
26 4 0.10
27 15 0.38
28 10 0.26
29 8 0.21
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (27 bp):
ATTTTTTATAAATAATATATTAATTAT
Found at i:6021158 original size:26 final size:26
Alignment explanation
Indices: 6021066--6021158 Score: 79
Period size: 28 Copynumber: 3.5 Consensus size: 26
6021056 TATTTTGGTA
*
6021066 ATTTTTTATAAATAATATATTAATATATT
1 ATTTTTAATAAA-AATATATTAAT-T-TT
6021095 -TTTTTCAATAAAAATATATTAATTTT
1 ATTTTT-AATAAAAATATATTAATTTT
6021121 ATTTTT-AT-AAAATA-A-TAATTTAT
1 ATTTTTAATAAAAATATATTAATTT-T
*
6021144 GTTATTTAATAAAAA
1 ATT-TTTAATAAAAA
6021159 ATCTATATAT
Statistics
Matches: 56, Mismatches: 2, Indels: 15
0.77 0.03 0.21
Matches are distributed among these distances:
22 6 0.11
23 4 0.07
24 9 0.16
25 4 0.07
26 6 0.11
27 6 0.11
28 16 0.29
29 5 0.09
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (26 bp):
ATTTTTAATAAAAATATATTAATTTT
Found at i:6021443 original size:17 final size:17
Alignment explanation
Indices: 6021423--6021455 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6021413 TGAAACTCAA
*
6021423 TAAAAAAAGAAAAAAGG
1 TAAAAAAAAAAAAAAGG
6021440 TAAAAAAAAAAAAAAG
1 TAAAAAAAAAAAAAAG
6021456 AGATTTGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (17 bp):
TAAAAAAAAAAAAAAGG
Found at i:6022584 original size:18 final size:19
Alignment explanation
Indices: 6022539--6022585 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
6022529 TTTTTGCTAA
*
6022539 AAAATAATAAAATAATTAT
1 AAAATAATAAAATAATAAT
6022558 AAAA-AATAAAATAA-AAT
1 AAAATAATAAAATAATAAT
*
6022575 AAAATGATAAA
1 AAAATAATAAA
6022586 TTGTTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 6 0.24
18 15 0.60
19 4 0.16
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (19 bp):
AAAATAATAAAATAATAAT
Found at i:6022765 original size:17 final size:18
Alignment explanation
Indices: 6022740--6022773 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6022730 TTAGTTAAAC
*
6022740 AATATTAAAAA-TAATAA
1 AATAATAAAAATTAATAA
6022757 AATAATAAAAATTAATA
1 AATAATAAAAATTAATA
6022774 TTTTGAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AATAATAAAAATTAATAA
Found at i:6023265 original size:17 final size:18
Alignment explanation
Indices: 6023238--6023271 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6023228 CAATTTTTCC
*
6023238 AAAATATTTTTTTAAATA
1 AAAATATTTTTATAAATA
6023256 AAAATA-TTTTATAAAT
1 AAAATATTTTTATAAAT
6023272 TCTGCTAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AAAATATTTTTATAAATA
Found at i:6026793 original size:22 final size:21
Alignment explanation
Indices: 6026745--6026793 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
6026735 ACAAAAGTGT
6026745 TATCA-AAATATCATAGAAAA
1 TATCATAAATATCATAGAAAA
6026765 -ATCATAAATATCAT-GCAACAA
1 TATCATAAATATCATAG-AA-AA
6026786 TATCATAA
1 TATCATAA
6026794 TTAAATCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 5 0.20
20 11 0.44
21 2 0.08
22 7 0.28
ACGTcount: A:0.55, C:0.14, G:0.04, T:0.27
Consensus pattern (21 bp):
TATCATAAATATCATAGAAAA
Found at i:6026937 original size:14 final size:14
Alignment explanation
Indices: 6026920--6026963 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
6026910 ATTTTTTTTC
6026920 AATAAAATAAAATA
1 AATAAAATAAAATA
*
6026934 AATAAAACTGAAAT-
1 AATAAAA-TAAAATA
*
6026948 AATAAAAAAAAATA
1 AATAAAATAAAATA
6026962 AA
1 AA
6026964 ACAAAATAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
13 4 0.16
14 16 0.64
15 5 0.20
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.18
Consensus pattern (14 bp):
AATAAAATAAAATA
Found at i:6026982 original size:6 final size:5
Alignment explanation
Indices: 6026920--6026987 Score: 52
Period size: 5 Copynumber: 13.4 Consensus size: 5
6026910 ATTTTTTTTC
* * *
6026920 AATAA AATAA AAT-A AATAA AACTGA AAT-- AATAA AAAAA AATAA AACAA
1 AATAA AATAA AATAA AATAA AA-TAA AATAA AATAA AATAA AATAA AATAA
6026968 AATAGAA AATCAA AATAA AA
1 AAT--AA AAT-AA AATAA AA
6026988 AAATCAAACC
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
3 3 0.06
4 4 0.08
5 30 0.59
6 9 0.18
7 5 0.10
ACGTcount: A:0.76, C:0.04, G:0.03, T:0.16
Consensus pattern (5 bp):
AATAA
Found at i:6026992 original size:14 final size:14
Alignment explanation
Indices: 6026923--6026995 Score: 53
Period size: 14 Copynumber: 5.2 Consensus size: 14
6026913 TTTTTTCAAT
6026923 AAAATAAAATAAAT-
1 AAAATAAAA-AAATC
* *
6026937 AAAACTGAAATAAT-
1 AAAA-TAAAAAAATC
* *
6026951 AAAAAAAAATAAAAC
1 AAAATAAAA-AAATC
*
6026966 AAAAT-AGAAAATC
1 AAAATAAAAAAATC
6026979 AAAATAAAAAAATC
1 AAAATAAAAAAATC
6026993 AAA
1 AAA
6026996 CCAATTAACA
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
13 12 0.27
14 25 0.56
15 8 0.18
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.15
Consensus pattern (14 bp):
AAAATAAAAAAATC
Found at i:6031847 original size:14 final size:14
Alignment explanation
Indices: 6031828--6031857 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6031818 AAAAAAGAAC
6031828 AAAAAAATAATAAT
1 AAAAAAATAATAAT
6031842 AAAAAAATAATAAT
1 AAAAAAATAATAAT
6031856 AA
1 AA
6031858 TGGTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AAAAAAATAATAAT
Found at i:6031874 original size:3 final size:3
Alignment explanation
Indices: 6031868--6031908 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
6031858 TGGTAATAAT
6031868 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
6031909 TAATAATAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:6031913 original size:3 final size:3
Alignment explanation
Indices: 6031907--6031942 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
6031897 CAACAACAAC
6031907 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6031943 GAACAAGCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6032039 original size:26 final size:26
Alignment explanation
Indices: 6032003--6032055 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6031993 AACATTGATT
6032003 GGCCCAATTAGGCCCAAACCTTAATG
1 GGCCCAATTAGGCCCAAACCTTAATG
*
6032029 GGCCCAATTAGGCCCGAACCTTAATG
1 GGCCCAATTAGGCCCAAACCTTAATG
6032055 G
1 G
6032056 ACTCGAACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.23, T:0.19
Consensus pattern (26 bp):
GGCCCAATTAGGCCCAAACCTTAATG
Found at i:6032637 original size:116 final size:116
Alignment explanation
Indices: 6032477--6032923 Score: 397
Period size: 116 Copynumber: 3.9 Consensus size: 116
6032467 ATGTCGCGAG
* * * * * *
6032477 TCAAAATAAAGCAACTAGGATCAAGTTGAGGTT-AAAAGTGAATGATTGAACTGATGTCGCGAGT
1 TCAAAATAAAGCAACCAGGATCGAGTCGAGGTTGAAAA-TAAATGATCGAACTGATGTCGTGAGT
* * * *
6032541 CTGACAATGATTTGACCTGAGTCGAGATCAAATGACTAGGACGATGTCACAA
65 TTGACAATGATCTGACCTAAGTCGAGATCAAATGACTGGGACGATGTCACAA
** * * * *
6032593 TCAAAATAAAGTGACCAGGGTCGAGTCGAGGTTGAAAATAAATGA-CTGAACTGATGTTGTAAGG
1 TCAAAATAAAGCAACCAGGATCGAGTCGAGGTTGAAAATAAATGATC-GAACTGATGTCGTGAGT
* * *
6032657 TTGACGATGATCTGACCTAAGTCGAGATCAAATGACTGGGATGATGTCGCAA
65 TTGACAATGATCTGACCTAAGTCGAGATCAAATGACTGGGACGATGTCACAA
* * * * * * *
6032709 TTCAAAATAAAGCGACCAAGA-CGGAGTTGAGGTCGAAAAT-AATGA-CCAGACTAAT-TTGTGA
1 -TCAAAATAAAGCAACCAGGATC-GAGTCGAGGTTGAAAATAAATGATCGA-ACTGATGTCGTGA
* * * * * *
6032770 ATTTGACAATGATCTGACCTAAGTCAAGATCAAATGATTGGGACAATACTGCA-AG
63 GTTTGACAATGATCTGACCTAAGTCGAGATCAAATGACTGGGACGAT-GT-CACAA
* * * * * * *
6032825 TCAAAATAAAGTAATCAAGATCGAGTCAAGGTTGAAAAGAAATGATCGAATTGATGTCGTGGGTT
1 TCAAAATAAAGCAACCAGGATCGAGTCGAGGTTGAAAATAAATGATCGAACTGATGTCGTGAGTT
* *
6032890 TGA-AGATGATTTAACCTAAGTCGAGATCAAATGA
66 TGACA-ATGATCTGACCTAAGTCGAGATCAAATGA
6032924 GTGGATAGTG
Statistics
Matches: 266, Mismatches: 53, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
115 76 0.29
116 116 0.44
117 74 0.28
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (116 bp):
TCAAAATAAAGCAACCAGGATCGAGTCGAGGTTGAAAATAAATGATCGAACTGATGTCGTGAGTT
TGACAATGATCTGACCTAAGTCGAGATCAAATGACTGGGACGATGTCACAA
Found at i:6032862 original size:115 final size:116
Alignment explanation
Indices: 6032542--6032923 Score: 359
Period size: 115 Copynumber: 3.3 Consensus size: 116
6032532 GTCGCGAGTC
* * *
6032542 TGACAATGATTTGACCTGAGTCGAGATCAAATGACTAGGACGATGT-CACAATCAAAATAAAGTG
1 TGACAATGATCTGACCTAAGTCGAGATCAAATGACTGGGACGATGTGCA-AATCAAAATAAAGTG
* * * *
6032606 ACCAGGGTCGAGTCGAGGTTGAAAATAAATGACTGAACTGATGTTGTAAGGT
65 ACCAAGATCGAGTCGAGGTTGAAAATAAATGACAGAACTAATGTTGTAAGGT
* * * *
6032658 TGACGATGATCTGACCTAAGTCGAGATCAAATGACTGGGATGATGTCGCAATTCAAAATAAAGCG
1 TGACAATGATCTGACCTAAGTCGAGATCAAATGACTGGGACGATGT-GCAAATCAAAATAAAGTG
* * *
6032723 ACCAAGA-CGGAGTTGAGGTCGAAAAT-AATGACCAG-ACTAAT-TTGTGAA-TT
65 ACCAAGATC-GAGTCGAGGTTGAAAATAAATGA-CAGAACTAATGTTGT-AAGGT
* * * * * *
6032773 TGACAATGATCTGACCTAAGTCAAGATCAAATGATTGGGACAATACTGCAAGTCAAAATAAAGTA
1 TGACAATGATCTGACCTAAGTCGAGATCAAATGACTGGGACGAT-GTGCAAATCAAAATAAAGTG
* * * * * * *
6032838 ATCAAGATCGAGTCAAGGTTGAAAAGAAATGATC-GAATTGATGTCGT-GGGTT
65 ACCAAGATCGAGTCGAGGTTGAAAATAAATGA-CAGAACTAATGTTGTAAGG-T
* *
6032890 TGA-AGATGATTTAACCTAAGTCGAGATCAAATGA
1 TGACA-ATGATCTGACCTAAGTCGAGATCAAATGA
6032924 GTGGATAGTG
Statistics
Matches: 216, Mismatches: 37, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
115 79 0.37
116 67 0.31
117 68 0.31
118 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (116 bp):
TGACAATGATCTGACCTAAGTCGAGATCAAATGACTGGGACGATGTGCAAATCAAAATAAAGTGA
CCAAGATCGAGTCGAGGTTGAAAATAAATGACAGAACTAATGTTGTAAGGT
Found at i:6037424 original size:11 final size:11
Alignment explanation
Indices: 6037403--6037462 Score: 52
Period size: 11 Copynumber: 5.3 Consensus size: 11
6037393 ATGTCTAATT
6037403 AAAAAAA-AAA
1 AAAAAAACAAA
*
6037413 AACAAAACAAA
1 AAAAAAACAAA
6037424 AACAAAAAGCAAA
1 AA-AAAAA-CAAA
6037437 AAAATAAA-AATA
1 AAAA-AAACAA-A
*
6037449 AAAAAAATAAA
1 AAAAAAACAAA
6037460 AAA
1 AAA
6037463 TGAACATGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
10 6 0.14
11 14 0.33
12 13 0.31
13 9 0.21
ACGTcount: A:0.87, C:0.07, G:0.02, T:0.05
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:6037430 original size:18 final size:18
Alignment explanation
Indices: 6037403--6037462 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
6037393 ATGTCTAATT
6037403 AAAAAAAAAAAACAAAAC
1 AAAAAAAAAAAACAAAAC
* *
6037421 AAAAACAAAAAGCAAAA-
1 AAAAAAAAAAAACAAAAC
*
6037438 AAATAAAAATAAAA-AAAAT
1 AAA-AAAAA-AAAACAAAAC
6037457 AAAAAA
1 AAAAAA
6037463 TGAACATGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
17 3 0.09
18 26 0.74
19 6 0.17
ACGTcount: A:0.87, C:0.07, G:0.02, T:0.05
Consensus pattern (18 bp):
AAAAAAAAAAAACAAAAC
Done.