Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 5 of 93
Found at i:683607 original size:475 final size:481
Alignment explanation
Indices: 682704--683631 Score: 1063
Period size: 475 Copynumber: 1.9 Consensus size: 481
682694 ACTTCGTATG
* * * * *
682704 CTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGCATGAACTCCACATGCCTAAGTCAACCAACGAAACGAGCGTACGGGCGCTCAGC
** * * **
682769 CGACCGGAGAGGCATAATGCGTAAGCCGATGATCAGTTCGATCCCCCTCTGCATGCTATCGATCC
66 CGACCGGAGACACATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGC-ATCGAT-C
* * * * **
682834 CGTTGTCGGTCCTATTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTGTA
129 CG-TGTC-GTCCTATT-CCACAACCCTCAGTCCGGCTGGAGATTAGACATGGAATGAACTCCCTA
* * * * *
682899 TGCCTAAGCCAACCCACGAAACGAGCGTGTAGGCACTCAGTCGGCCGGAGAGGCAGAATGTGCAA
191 TGCCTAAGCCAACCCACAAAACGAGCGTGTAGGCACTCAGCCGGACAGAGAGGCAGAATGCGCAA
* ** * * **
682964 GCTGAGCATCGGCTCGATCCCCCCTGTGTACTGTCGATCCTGCTGCTAGTCCTACTGTCGCAACC
256 GCTGAGCATCGGCCCGATCCCCCCTGCATACTGCCGATCCTGCTGCGAGTCCTACTACCGCAACC
* * * *
683029 CTCGGGCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATACTTAGACATGGATTGAACTCCGT
321 CTCGGGCCGATCTAATCTTAGACTAGCAATGAACTCCGTATACTTAGACATGGATTGAACTCCGT
* * * * *
683094 ATGCCTAAGTCAACCCACGAAACGAGTGAACGGGCGCTCAATCGGCCAGAGAGGCAGAATGCGAT
386 ATGCCTAAGTCAACCCACCAAACGAGCGAACAGGCGCTCAACCGACCAGAGAGGCAGAATGCGAT
683159 CCTGCTACCTCAACCCTCAGTCCGGTCTGAT
451 CCTGCTACCTCAACCCTCAGTCCGGTCTGAT
* * * * *
683190 CTTAGACTGGGCATGAACTCTATATGCCTAAGTCAACCAACGAAATGAGCGTACGGGTGCTGAGC
1 CTTAGACTGGGCATGAACTCCACATGCCTAAGTCAACCAACGAAACGAGCGTACGGGCGCTCAGC
* *
683255 CGATCGGAGACACATAATGCGCAAGCCGAGGATTAGCCCGATCCCCCTCTGCATGC-T-G-T-CG
66 CGACCGGAGACACATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCATCGATCCG
*
683316 -GTC-TCGCTA-T-CACAACCCTCAGTCTGGCTGGAGATTAGACATGGAATGAACTCCCTATGCC
131 TGTCGTC-CTATTCCACAACCCTCAGTCCGGCTGGAGATTAGACATGGAATGAACTCCCTATGCC
* ** * * *
683377 TAAGCCAACCCACCAAAAC-AG-GTGTGCGGGTGCTTAGCCGGATAGATAGGCAGAATGCGCAAG
195 TAAGCCAACCCA-CAAAACGAGCGTGT--AGGCACTCAGCCGGACAGAGAGGCAGAATGCGCAAG
* * * * *
683440 CT-AGGGATCGGCCCGATCCCCTCTGCATGCTGCCGATCCTGTTGTCGA-TCCTGCTACCGCAAC
257 CTGA-GCATCGGCCCGATCCCCCCTGCATACTGCCGATCCTGCTG-CGAGTCCTACTACCGCAAC
* * * * *
683503 CCTCGGTCTGATTTGATCTTAGACTAGCAATGAACTCCGTATGCTTAGACTATGGA-TGAACTCC
320 CCTCGGGCCGATCTAATCTTAGACTAGCAATGAACTCCGTATACTTAGAC-ATGGATTGAACTCC
** * *
683567 GTATGCCTAAGTCAACCCACCAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGAGGCAGGATGCG
384 GTATGCCTAAGTCAACCCACCAAACGAGCGAACAGGCGCTCAACCGACCAGAGAGGCAGAATGCG
683632 CAAGTCGGGG
Statistics
Matches: 369, Mismatches: 66, Indels: 25
0.80 0.14 0.05
Matches are distributed among these distances:
473 4 0.01
474 59 0.16
475 182 0.49
476 10 0.03
477 3 0.01
478 3 0.01
480 2 0.01
482 1 0.00
483 1 0.00
484 1 0.00
486 103 0.28
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (481 bp):
CTTAGACTGGGCATGAACTCCACATGCCTAAGTCAACCAACGAAACGAGCGTACGGGCGCTCAGC
CGACCGGAGACACATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCATCGATCCG
TGTCGTCCTATTCCACAACCCTCAGTCCGGCTGGAGATTAGACATGGAATGAACTCCCTATGCCT
AAGCCAACCCACAAAACGAGCGTGTAGGCACTCAGCCGGACAGAGAGGCAGAATGCGCAAGCTGA
GCATCGGCCCGATCCCCCCTGCATACTGCCGATCCTGCTGCGAGTCCTACTACCGCAACCCTCGG
GCCGATCTAATCTTAGACTAGCAATGAACTCCGTATACTTAGACATGGATTGAACTCCGTATGCC
TAAGTCAACCCACCAAACGAGCGAACAGGCGCTCAACCGACCAGAGAGGCAGAATGCGATCCTGC
TACCTCAACCCTCAGTCCGGTCTGAT
Found at i:684282 original size:26 final size:26
Alignment explanation
Indices: 684244--684294 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
684234 GGCTTAAAAT
684244 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
684270 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
684295 ACCTAGGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:684565 original size:159 final size:158
Alignment explanation
Indices: 684270--684771 Score: 370
Period size: 159 Copynumber: 3.2 Consensus size: 158
684260 ACTCCGTATG
* * * ** ** * * *
684270 CTTAGACAT-GGAATGAACTCCGTATACCTAGGCCAACCCATGAAATGATCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCATAATCCAACCCACAAAACGAACGTGCGAGCGCTCAG
* * * * * * * * *
684334 TCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGGT-CCCCTCCTACGTGCTATCAAT
65 CCGATCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATACCCCT--TACGTGCTGTCGAT
***
684398 CTTGCTGCCGCAACCCTCGGTCCGGTCTGAT
128 CCCACTGCCGCAACCCTCGGTCCGGTCTGAT
* * ** * * * *
684429 CTTAGACTGGGAATGAACTTCGTATGCATAAGT-CAATCGATGAAATGAACGTGCGGGCGTTGAG
1 CTTAGACTGGGAATGAACTTCGTATGCATAA-TCCAACCCACAAAACGAACGTGCGAGCGCTCAG
* * * * *
684493 CCGA-CTGAAAAGGCATAATGCGTAAGCCGGGGATCGGCCCGATACCCCTCTACGTGCTGTCGGT
65 CCGATC-GAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATACCCCT-TACGTGCTGTCGAT
* * * **
684557 CCCACTGCCACAACCTTCGGTCCAG-CTAGGG
128 CCCACTGCCGCAACCCTCGGTCCGGTCT-GAT
* * * * **
684588 CTTAGACAT-GGAATAAACTCCCTATGCCTAATCCAACCCACAAAACGGGCGTGCGAGCGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCATAATCCAACCCACAAAACGAACGTGCGAGCGCTCAG
* * * * * *
684652 TCGATCGGAGAGGCAGAATGCGCAAGCCAGGGCTCGACCCGGTCCCCCTTACGTGCTGTCGATCC
65 CCGATCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATACCCCTTACGTGCTGTCGATCC
** * * *
684717 TGCTACCGTAACCCTCTGTCCGGTCTGAT
130 CACTGCCGCAACCCTCGGTCCGGTCTGAT
684746 CTTAGACTGGGAATGAAC-TCGTATGC
1 CTTAGACTGGGAATGAACTTCGTATGC
684772 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 68, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 7 0.03
158 51 0.19
159 200 0.75
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTTCGTATGCATAATCCAACCCACAAAACGAACGTGCGAGCGCTCAGC
CGATCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATACCCCTTACGTGCTGTCGATCCC
ACTGCCGCAACCCTCGGTCCGGTCTGAT
Found at i:684796 original size:26 final size:25
Alignment explanation
Indices: 684746--684797 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
684736 CCGGTCTGAT
*
684746 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCATATG
*
684771 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACT-CATATG
684797 C
1 C
684798 ATAAGTCTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCATATG
Found at i:684957 original size:326 final size:317
Alignment explanation
Indices: 684269--684965 Score: 733
Period size: 318 Copynumber: 2.2 Consensus size: 317
684259 AACTCCGTAT
* * ** * * *
684269 GCTTAGACATGGAATGAACTCCGTATACCTAGGCCAACCCATGAAATGATCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAG
* *
684334 TCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGGTCCCCTCCTACGTGCTATCAATC
66 TCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCTCCTACGTGCTATCAATC
* * *
684399 TTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCA
131 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGACA
* * * * ** * * *
684464 ATCGATGAAATGAACGTGCGGGCGTTGAGCCGACTGAAAAGGCATAATGCGTAAGCCGGGGATCG
196 AGCGATGAAATCAACATGCAGAAGTT-AGCCGACTGAAAAGGCATAATGCGCAAGCCGAGGATCA
* *
684529 GCCCGATACCCCTCTACGTGCTGTCGGTCCCACTGCCACAACCTTCGGTCCAGCTAGG
260 GCCCGATACCCCTCTACGTGCTGTCGGTCCCACTACCACAACCCTCGGTCCAGCTAGG
* * * *
684587 GCTTAGACATGGAATAAACTCCCTATGCCTAATCCAACCCACAAAACGGGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAG
* * * * *
684652 TCGATCGGAGAGGCAGAATGCGCAAGCCAGGGCTCGACCCGGTCCCC-CTTACGTGCTGTCGATC
66 TCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCTCCTACGTGCTATCAATC
* * * *
684716 CTGCTACCGTAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCGTATGC-TTAGACT
131 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGACA
* * * * * * * * *
684779 GGGGATGAACTCCATATGCATAAGTCT-GCC-AGTCGGAGAGGCATAATGCGCAAGCCGAGGATC
196 AGCGATGAAATCAACATGCAGAAGT-TAGCCGACT-GAAAAGGCATAATGCGCAAGCCGAGGATC
* * **
684842 AGCCCGGT-CCCTTTCTGCGTGCAGTCGATCCCGCTGTTGGTCCTGCTACCACAACCCTCGGT-C
259 AGCCCGATACCC---CT-C-T--A--CG-T---GCTGTCGGTCCCACTACCACAACCCTCGGTCC
* *
684905 TGACTGGG
311 AG-CTAGG
684913 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGT
684966 ACGGATGCTC
Statistics
Matches: 308, Mismatches: 55, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
313 5 0.02
314 34 0.11
315 17 0.06
316 11 0.04
317 59 0.19
318 98 0.32
320 1 0.00
322 2 0.01
323 1 0.00
325 2 0.01
326 78 0.25
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAG
TCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCTCCTACGTGCTATCAATC
CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGACA
AGCGATGAAATCAACATGCAGAAGTTAGCCGACTGAAAAGGCATAATGCGCAAGCCGAGGATCAG
CCCGATACCCCTCTACGTGCTGTCGGTCCCACTACCACAACCCTCGGTCCAGCTAGG
Found at i:685618 original size:26 final size:26
Alignment explanation
Indices: 685589--685639 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
685579 CGATCTTAGG
685589 CTGGGAATGAACTCCGTATGCCTAGA
1 CTGGGAATGAACTCCGTATGCCTAGA
* * *
685615 CTGGGGATGAATTCTGTATGCCTAG
1 CTGGGAATGAACTCCGTATGCCTAG
685640 GTCAACCCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
CTGGGAATGAACTCCGTATGCCTAGA
Found at i:686814 original size:26 final size:26
Alignment explanation
Indices: 686785--686912 Score: 150
Period size: 26 Copynumber: 4.9 Consensus size: 26
686775 ATCCGATCTA
* *
686785 AGACTTGGAATGAACTCCGTATACTT
1 AGACTAGGAATGAACTCCGTATGCTT
*
686811 AGACTAGGGATGAACTCCGTATGCTT
1 AGACTAGGAATGAACTCCGTATGCTT
* * *
686837 AGACTGGGGATGAACTCCGTATGCCT
1 AGACTAGGAATGAACTCCGTATGCTT
* *
686863 ATACTAGGAATGAACTCTGTATGCTT
1 AGACTAGGAATGAACTCCGTATGCTT
* *
686889 AG-CCATGGAATGAACTCCATATGC
1 AGACTA-GGAATGAACTCCGTATGC
686913 CTAAGCCAAC
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
25 2 0.02
26 85 0.98
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTT
Found at i:687313 original size:159 final size:157
Alignment explanation
Indices: 686892--687332 Score: 409
Period size: 159 Copynumber: 2.8 Consensus size: 157
686882 TATGCTTAGC
* **
686892 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAATCGACCG
1 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCG
* * * * ** *
686957 GTGAGGCACAATGCGTAATCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTTGATCCTGCTACT
66 GAGAGGCACAATGCGTAAACCGGGGATCAGCCCGATCCCCCCTGCGTGCTGCAGATCCTGCTACC
* * *
687022 GCAACCCTCGGTTCAGTCTGATGTTAGA
131 ACAACCCTCGGTTCAG-CTGAGGTTACA
** ** * ** * *
687050 C-TGGGAATGAACTCTGTATGAATAAGTCAACCCACGAAATTAGCGTGCGGGTGCTGAGCCGACC
1 CAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACC
* * ** * * * ** * * * *
687114 GAAGAGGCATAATGCGTAAGTCAGGGACCAACAGGGTCCCCCTCTGCATGCTGCAGGTCCTGCTG
65 GGAGAGGCACAATGCGTAAACCGGGGATCAGCCCGATCCCCC-CTGCGTGCTGCAGATCCTGCTA
* *
687179 CCACAACCCTTGGTTCTA-CTGGGGCTTACA
129 CCACAACCCTCGGTTC-AGCTGAGG-TTACA
* * * * *
687209 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAGCCGATCG
1 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCG
* * * *
687274 GAGAGACAGAATGCGTAAACCGGGGATCAGCCCGATCCCCCCTGCGTGCTACCGATCCT
66 GAGAGGCACAATGCGTAAACCGGGGATCAGCCCGATCCCCCCTGCGTGCTGCAGATCCT
687333 ACAGCCGCAA
Statistics
Matches: 216, Mismatches: 62, Indels: 10
0.75 0.22 0.03
Matches are distributed among these distances:
157 1 0.00
158 98 0.45
159 115 0.53
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCG
GAGAGGCACAATGCGTAAACCGGGGATCAGCCCGATCCCCCCTGCGTGCTGCAGATCCTGCTACC
ACAACCCTCGGTTCAGCTGAGGTTACA
Found at i:687402 original size:26 final size:26
Alignment explanation
Indices: 687361--687413 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
687351 CCAGTCTGAT
*
687361 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
687387 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
687413 C
1 C
687414 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:688618 original size:158 final size:158
Alignment explanation
Indices: 688108--688862 Score: 719
Period size: 159 Copynumber: 4.8 Consensus size: 158
688098 AACTCCGTAT
* * * * * * *
688108 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTCCGGGTGCGCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
688173 CCGGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCT-TGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGTGTGCTGCCGATCC
* * * * * * *
688237 TACTGTCGCAACCTTCGGTCCGGTTCGA
131 CACTGCCACAACCCTCGGTCCGGCTGGG
* * * * * * * *
688265 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * * * * * * *
688329 GTTGGTCGAAGAGGCATAATGCGCGACCCGGGGATCGACCTGGTCCCC-CTATGAATGCTGCCGG
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGTG--TGCTGCCGA
* * *
688393 TCCCGCTACCACAACCCTCGGTCTGGCTGGG
128 TCCCACTGCCACAACCCTCGGTCCGGCTGGG
* * * *
688424 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
688489 CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCTCGGTGTGCTACCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGTGTGCTGCCGATCC
* *
688554 CACTGCCACAACCCTCAGTCCGGCTGTG
131 CACTGCCACAACCCTCGGTCCGGCTGGG
* * * * *
688582 GCTTAGACATGGAATGAACTCCCTATGACTAGGCCAACCCATGAAACGAGCGTGCGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * *
688647 CCGGTCGGAGAGGCATAATGCGCAAGCAAGGGATCGGCTCGGTCCCCCTCTGTGTGCTGCTGGTC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTCTGTGTGCTGCCGATC
** *
688712 CCGTTGCCACAACCCTCGGTCTGGCTGGG
130 CCACTGCCACAACCCTCGGTCCGGCTGGG
* * * * *
688741 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACGGGCGTACGGGCCCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
688806 CCAACGGGAGAGGCAGAATGCGCAAGTC-GGGATCGACCCGATCTCCC-CTGCGTGCTG
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTC-CCCTCTGTGTGCTG
688863 TCGGTCTTGC
Statistics
Matches: 477, Mismatches: 113, Indels: 16
0.79 0.19 0.03
Matches are distributed among these distances:
156 1 0.00
157 99 0.21
158 138 0.29
159 235 0.49
160 4 0.01
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGTGTGCTGCCGATCC
CACTGCCACAACCCTCGGTCCGGCTGGG
Found at i:688693 original size:317 final size:316
Alignment explanation
Indices: 688108--688861 Score: 860
Period size: 317 Copynumber: 2.4 Consensus size: 316
688098 AACTCCGTAT
* * * * * * ** *
688108 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTCCGGGTGCGCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAG
* * * * ** *
688173 CCGGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCTTGCGTGCTGTCGATCCT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCTGGCGTGCTACCGATCCC
* * * * * * * *
688238 ACTGTCGCAACCTTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAAC
131 ACTGCCACAACCCTCAGTCCGGTTCGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAAC
** * **
688303 CCACGAAACAAGCGTGCGAGCGCTGAGTTGGTCGAAGAGGCATAATGCGCGACCCGGGGATCGAC
196 CCACGAAACAAGCGTGCGAGCGCTGAGCCGGTCGAAGAGGCATAATGCGCAACCAAGGGATCGAC
688368 CTGGTCCCCCTATGAATGCTGCCGGTCCCGCTACCACAACCCTCGGTCTGGCTGGG
261 CTGGTCCCCCTATGAATGCTGCCGGTCCCGCTACCACAACCCTCGGTCTGGCTGGG
* * *
688424 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAG
* *
688489 CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCC-AGTCCCCTCGGTGTGCTACCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGA-TCCCCT-GGCGTGCTACCGATC
*
688553 CCACTGCCACAACCCTCAGTCCGGCTGT-G-GCTTAGACAT-GGAATGAACTCCCTATG-ACTAG
129 CCACTGCCACAACCCTCAGTCCGG-T-TCGAGCTTAGAC-TGGGAATGAACTCCCTATGCA-TAA
* * * * * *
688614 GCCAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGGTCGGAGAGGCATAATGCGCAAGCAAGGG
190 GCCAACCCACGAAACAAGCGTGCGAGCGCTGAGCCGGTCGAAGAGGCATAATGCGCAACCAAGGG
* * ** * * *
688679 ATCG-GCTCGGTCCCCCTCTGTGTGCTGCTGGTCCCGTTGCCACAACCCTCGGTCTGGCTGGG
255 ATCGACCT-GGTCCCCCTATGAATGCTGCCGGTCCCGCTACCACAACCCTCGGTCTGGCTGGG
* * *
688741 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACGGGCGTACGGGCCCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAG
** * *
688806 CCAACGGGAGAGGCAGAATGCGCAAGTC-GGGATC-GACCCGATCTCCCCT-GCGTGCT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGA--TCCCCTGGCGTGCT
688862 GTCGGTCTTG
Statistics
Matches: 368, Mismatches: 60, Indels: 20
0.82 0.13 0.04
Matches are distributed among these distances:
315 2 0.01
316 114 0.31
317 242 0.66
318 9 0.02
319 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCTGGCGTGCTACCGATCCC
ACTGCCACAACCCTCAGTCCGGTTCGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAAC
CCACGAAACAAGCGTGCGAGCGCTGAGCCGGTCGAAGAGGCATAATGCGCAACCAAGGGATCGAC
CTGGTCCCCCTATGAATGCTGCCGGTCCCGCTACCACAACCCTCGGTCTGGCTGGG
Found at i:688854 original size:159 final size:158
Alignment explanation
Indices: 688384--688854 Score: 556
Period size: 158 Copynumber: 3.0 Consensus size: 158
688374 CCCCTATGAA
* *
688384 TGCTGCCGGTCCCGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGGCATGGAATGAACTCCCTA
1 TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTA
** * *
688449 TGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAGCTGGCCGGAGAGGCAGAATGCGCAA
66 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGC-CGACGGAGAGGCAGAATGCGCAA
* *
688514 GCCGGGGATC-AGCCC-A-GTCCCCTCGGTG
130 G-CAGGGATCGA-CCCGATCTCCCCTCGGTG
* * * * * *
688542 TGCTACCGATCCCACTGCCACAACCCTCAGTCCGGCTGTGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTA
* * * ** * * *
688607 TGACTAGGCCAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGGTCGGAGAGGCATAATGCGCAA
66 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCC-GACGGAGAGGCAGAATGCGCAA
* * * *
688672 GCAAGGGATCGGCTCGGTC-CCCCTCTGTG
130 GC-AGGGATCGACCCGATCTCCCCTCGGTG
* *
688701 TGCTGCTGGTCCCGTTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTA
* * * *
688766 TCCCTAAGCCAACCCATGAAACGGGCGTACGGGCCCTCAGCCAACGGGAGAGGCAGAATGCGCAA
66 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCCGAC-GGAGAGGCAGAATGCGCAA
688831 GTC-GGGATCGACCCGATCTCCCCT
130 G-CAGGGATCGACCCGATCTCCCCT
688855 GCGTGCTGTC
Statistics
Matches: 258, Mismatches: 47, Indels: 15
0.81 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 132 0.51
159 124 0.48
160 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.17
Consensus pattern (158 bp):
TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCCGACGGAGAGGCAGAATGCGCAAG
CAGGGATCGACCCGATCTCCCCTCGGTG
Found at i:690002 original size:159 final size:158
Alignment explanation
Indices: 689640--690142 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 158
689630 AACTCTGTAT
* * * *
689640 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
** *
689705 CCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAACCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
689770 TGCTACCGCAACCCGCAGTCTGATCTGA
131 CGCTACCACAACCCGCAGTCTGATCTGA
* * * *
689798 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCA
* * * * * *
689862 GCCGACCGAAGAGGTATAATGCGTAAACCGAGGATCGA-CCGAGTCCCCCTCTGTGTGTTGTCGG
65 GCCGACCGAAGAGGCAGAATGCGCAAACCGAGGATCGACCCG-GTCCCCC-CTGCGTGCTGTCGA
* * * *
689926 TCCCGCTGCCACAACCCTCGGTCTGA-CTGGG
128 TCCCGCTACCACAACCCGCAGTCTGATCT-GA
* ** * * *
689957 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * * * * * * * *
690022 CCGATCGGAGAGGCAGAATGCGTAAGACAG-GGATTGGCCCGATCCCCCCTTCATGCTGTCGATC
66 CCGACCGAAGAGGCAGAATGCGCAA-ACCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
** **** * *
690086 TTGCTGTTGCAACCCTCGGT-TCGATCTGA
130 CCGCTACCACAACCCGCAGTCT-GATCTGA
*
690115 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
690143 TTACACTGGG
Statistics
Matches: 281, Mismatches: 54, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 6 0.02
158 148 0.53
159 120 0.43
160 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
CCGACCGAAGAGGCAGAATGCGCAAACCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
CGCTACCACAACCCGCAGTCTGATCTGA
Found at i:690152 original size:26 final size:26
Alignment explanation
Indices: 690116--690246 Score: 135
Period size: 26 Copynumber: 5.0 Consensus size: 26
690106 TCGATCTGAT
*
690116 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
690142 CTTACACTGGGGATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
690168 CTT-CGACTGGGGATGAACTCTGTATG
1 CTTAC-ACTGGGAATGAACTCCGTATG
* *
690194 AC-TAGACTGGGAATGAACTCTGTATG
1 -CTTACACTGGGAATGAACTCCGTATG
690220 CTTAGC-CAT-GGAATGAACTCCGTATG
1 CTTA-CAC-TGGGAATGAACTCCGTATG
690246 C
1 C
690247 CTAAGCCAAC
Statistics
Matches: 90, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.02
26 86 0.96
27 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:690203 original size:52 final size:52
Alignment explanation
Indices: 690120--690246 Score: 150
Period size: 52 Copynumber: 2.4 Consensus size: 52
690110 TCTGATCTTA
*
690120 GACTGGGAATGAACTCCGTATGCTTACACTGGGGATGAACTCCATATGCTTC
1 GACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCATATGCTTC
* * * ** *
690172 GACTGGGGATGAACTCTGTATGAC-TAGACTGGGAATGAACTCTGTATGCTTA
1 GACTGGGAATGAACTCCGTATG-CTTACACTGGGAATGAACTCCATATGCTTC
*
690224 GCCAT-GGAATGAACTCCGTATGC
1 GAC-TGGGAATGAACTCCGTATGC
690247 CTAAGCCAAC
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
51 1 0.02
52 60 0.95
53 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (52 bp):
GACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCATATGCTTC
Found at i:690723 original size:579 final size:579
Alignment explanation
Indices: 689617--690739 Score: 1511
Period size: 579 Copynumber: 1.9 Consensus size: 579
689607 CTCAAAATCT
* *
689617 TAGATTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCAC
1 TAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* *
689682 GAAACGAGCGTGCGGGCGCTCATCCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGG
66 GAAACGAGCATGCAGGCGCTCATCCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGG
* * *
689747 TCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCGCAGTCTGATCTGATCTTAGACTGGGAA
131 TCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCGCAGTCCGATCTGATCTTAGACTGGGAA
* *
689812 TGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAGCCGACCGAAGAGGT
196 TGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAACCGACCGAAGAGGC
* * * * * * *
689877 ATAATGCGTAAACCGAGGATCGACCGAGTCCCCCTCTGTGTGTTGTCGGTCCCGCTGCCACAACC
261 ATAATACGCAAACCGAGGACCGACCGAGTCCCCCTCTGCGTGCTGCCGGCCCCGCTGCCACAACC
*
689942 CTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
326 CTCGGTCTGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
** * * *
690007 CATGTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGACAGGGATTGGCCCGATCCCCCCT
391 CATACGGGCGCTCAGCCGATCGGAGAGACAGAATACGTAAGACAGGGATCGGCCCGATCCCCCCT
* * * ** *** * **
690072 TCATGCTGTCGATCTTGCTGTTGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCC
456 TCATGCTATCGATCCTGCAGCCGCAACCCTCGAACCAATCCAATCTTAGACTGGGAATGAACTCC
690137 GTATGCTTACACTGGGGATGAACTCCATATGCTTCGACTGGGGATGAACTCTGTATGAC
521 GTATGCTTACACTGGGGATGAACTCCATATGCTTCGACTGGGGATGAACTCTGTATGAC
*
690196 TAGACTGGGAATGAACTCTGTATGCTTAGCCATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * **
690261 GAAACGAGCATGCAGGCGTTCAGT-CGG-CTGGAGAGGCAGAATGCGTGAGCC-AGGGATCGACC
66 GAAACGAGCATGCAGGCGCTCA-TCCGGTC-GAAGAGGCAGAATGCGCAAGCCGA-GGATCGACC
* * * ** * * * *
690323 CGGTCCCTCCTACGTGTTGTTGATCCTGCTGTCATAACCCTCGGTCCGATCTGATGTTAGACTGG
128 CGGTCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCGCAGTCCGATCTGATCTTAGACTGG
* ** ** *
690388 GAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAACCGGCCGAAGA
193 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAACCGACCGAAGA
** * * *
690453 GGCATAATACGCAAGTCGGGGACC-AGCTCG-GTCCCCCTTTGCGTGCTGCCGGCCCCGTTGCCA
258 GGCATAATACGCAAACCGAGGACCGA-C-CGAGTCCCCCTCTGCGTGCTGCCGGCCCCGCTGCCA
* *
690516 CAACCCTCGGTCTGACTGGGGCTTACACATGGAATGAACTCCCTATTCCTAAGCCAACCCATGAA
321 CAACCCTCGGTCTGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * *
690581 ACGGGCATACGGGCGCTCAGTCGGTTGGAGAGACAGAATACGTAAGTCAGGGATCGGCCCGGTCC
386 ACGGGCATACGGGCGCTCAGCCGATCGGAGAGACAGAATACGTAAGACAGGGATCGGCCCGATCC
* *
690646 CCTCTAT-GTGCTATCGATCCTGCAGCCGCAACCCTCGAACCAATCCAATCTTAGACTGGGAATG
451 CCCCT-TCATGCTATCGATCCTGCAGCCGCAACCCTCGAACCAATCCAATCTTAGACTGGGAATG
*** *
690710 AACTTTTTATGCTTAGACTGGGGATGAACT
515 AACTCCGTATGCTTACACTGGGGATGAACT
690740 TCGTATGCCT
Statistics
Matches: 467, Mismatches: 71, Indels: 12
0.85 0.13 0.02
Matches are distributed among these distances:
578 3 0.01
579 460 0.99
580 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (579 bp):
TAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCATGCAGGCGCTCATCCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGG
TCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCGCAGTCCGATCTGATCTTAGACTGGGAA
TGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAACCGACCGAAGAGGC
ATAATACGCAAACCGAGGACCGACCGAGTCCCCCTCTGCGTGCTGCCGGCCCCGCTGCCACAACC
CTCGGTCTGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
CATACGGGCGCTCAGCCGATCGGAGAGACAGAATACGTAAGACAGGGATCGGCCCGATCCCCCCT
TCATGCTATCGATCCTGCAGCCGCAACCCTCGAACCAATCCAATCTTAGACTGGGAATGAACTCC
GTATGCTTACACTGGGGATGAACTCCATATGCTTCGACTGGGGATGAACTCTGTATGAC
Found at i:690746 original size:26 final size:26
Alignment explanation
Indices: 690695--690747 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
690685 CCAATCCAAT
**
690695 CTTAGACTGGGAATGAACTTTTTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
690721 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
690747 C
1 C
690748 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:691458 original size:26 final size:26
Alignment explanation
Indices: 691420--691472 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
691410 GGCTCAAAAT
*
691420 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
691446 CTTAGAC-GTGGAATAAACTTCGTATG
1 CTTAGACTG-GGAATAAACTCCGTATG
691472 C
1 C
691473 CTAAGCCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:691942 original size:158 final size:159
Alignment explanation
Indices: 691445--692050 Score: 528
Period size: 159 Copynumber: 3.8 Consensus size: 159
691435 AACTCCGTAT
* * * * * * * **
691445 GCTTAGACGTGGAATAAACTTCGTATGCCTAAGCCAAACCACGAAATGAACGTGCGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAG
* * * * * *
691510 CCGGCCAGATAGGTAGAATGCGCAAGCCGGGGATCGACCTGGTCCCTCCTGCGTGCTGTCGATCC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGCCGATCC
* ** * *
691575 TACTACCGTAACCCTCGGTCCGGTCTGAT-
131 CACTACCACAACCCTCGGTTCGGACT-ATG
* * * * * *
691604 -CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACGCACGAAATGAGTGTGCGGGTACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCA
* * * * * * * * * *
691667 GCC-AGCTGAAAAGGCATAATGCCCAAGCCGGGGATCGGCCTGGTCCCCTTCTACGTGCTGTCGG
65 GCCGACCAG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCTCCTGCGTGCTGCCGA
* * **
691731 TCCCGCTACCACAACCCTC-GATCTGG-CTGGG
128 TCCCACTACCACAACCCTCGGTTC-GGACTATG
* ** * *
691762 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAG
* * *
691827 CCGACCAGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCTCC-GACGTGCTGCCGATC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTG-CGTGCTGCCGATC
*
691891 CCACTGCCACAACCCTCGGTTC-GACTATG
130 CCACTACCACAACCCTCGGTTCGGACTATG
* * * *
691920 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACG-GTCATGCAGGGTGCTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTGC-GGGTACTC
* ** * * * * *
691984 AGTCGGTCGGAGGGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGAT
64 AGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGCCGAT
692049 CC
129 CC
692051 TGCTGTCGCA
Statistics
Matches: 360, Mismatches: 73, Indels: 28
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.01
158 171 0.47
159 179 0.50
160 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAG
CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGCCGATCC
CACTACCACAACCCTCGGTTCGGACTATG
Found at i:698760 original size:171 final size:171
Alignment explanation
Indices: 698412--698780 Score: 438
Period size: 171 Copynumber: 2.2 Consensus size: 171
698402 ACTCTATATG
* * * * ** *
698412 CTTAAACTGGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGAGCTCAAC
* * *
698477 CGACTGGAGAGGCATAATGCATAAGCCAGGTATCAGCCCGGTCCCCCTCTACATGCTGTCGATCC
66 CGACTGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCTGTCGATCC
** * *
698542 CGCTGCCAATCCTGTTGCCACAACCCTCGGTCCGACTGGGC
131 CGCTGCCAATCCTACTGCCACAACCATCGGTCCGACTGGAC
*
698583 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACTGGAGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGAGCTCAA
* * * *
698647 CCGATTGGAGAGGCAGAATGCACAAGCCAGGGATCGGTCCGGTCCCCC-CTAGCGTGCTGTCGAT
65 CCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTA-CATGCTGTCGAT
* *** * * * * *
698711 CCTGCTGCTGGTCCTACTGTCATAACCATCGGTCTGGTCT-GAT
129 CCCGCTGCCAATCCTACTGCCACAACCATCGGTC-CGACTGGAC
698754 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
698781 TTCGACATGG
Statistics
Matches: 166, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
170 4 0.02
171 158 0.95
172 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (171 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGAGCTCAAC
CGACTGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCTGTCGATCC
CGCTGCCAATCCTACTGCCACAACCATCGGTCCGACTGGAC
Found at i:699112 original size:158 final size:158
Alignment explanation
Indices: 698844--699228 Score: 395
Period size: 158 Copynumber: 2.4 Consensus size: 158
698834 CTCCGAGCAG
* * * * * * *
698844 TCAGCCGACCGGAGAGGCAGAATGTGCAAGTCAGGGA-CTGGCTCGATCCCCC-CTACGTGCTGT
1 TCAGCCGATCGGAGAGGCAGAAAGTACAAGCCAGGGATC-GACCCGATCCCCCTCTGCGTGCTGT
** * * * * * *
698907 CGATCCTGCTACCACAACCTCGGTCCGGTTCGATCTTAGATTGGGAATGAACTTCGTATGCCTAA
65 CGATCCCACTACCACAACCTCGGTCCGGCTAGAGCTTAGAATGGGAATGAACTCCCTATGCCTAA
* * * **
698972 GTCAACCCATGAAATGAGTGTACGGGCAC
130 GCCAACCCACGAAAAGAGCATACGGGCAC
* * *
699001 TGA-CCGATCGGAGAGGCAGAATGTACAAGCC-GAGGATCGACCCGGTCCCCCTCTGCGTGCTGT
1 TCAGCCGATCGGAGAGGCAGAAAGTACAAGCCAG-GGATCGACCCGATCCCCCTCTGCGTGCTGT
* *
699064 CGGTCCCACTACCACAACCCTCGGTCCGGCTAGCGCTTAGACAT-GGAATGAACTCCCTATGCCT
65 CGATCCCACTACCACAA-CCTCGGTCCGGCTAGAGCTTAGA-ATGGGAATGAACTCCCTATGCCT
* * *
699128 AAGCCAACCCACGAAAAGGGCATGCGGGCGC
128 AAGCCAACCCACGAAAAGAGCATACGGGCAC
* * * *
699159 TCAGCCGATCGGAGAGGCAGAAAGTGCAAGTCAGGGATCGGCCCGAT-CCCCTCTGCGTGCTATC
1 TCAGCCGATCGGAGAGGCAGAAAGTACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGT-
699223 CGATCC
65 CGATCC
699229 TACTGTCAGC
Statistics
Matches: 186, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
155 1 0.01
156 38 0.20
157 27 0.15
158 77 0.41
159 42 0.23
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
TCAGCCGATCGGAGAGGCAGAAAGTACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTC
GATCCCACTACCACAACCTCGGTCCGGCTAGAGCTTAGAATGGGAATGAACTCCCTATGCCTAAG
CCAACCCACGAAAAGAGCATACGGGCAC
Found at i:700046 original size:26 final size:26
Alignment explanation
Indices: 700008--700060 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
699998 GGCTCAAAAT
700008 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
700034 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
700060 C
1 C
700061 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:700221 original size:26 final size:26
Alignment explanation
Indices: 700192--700243 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
700182 CCGGTCCAAT
*
700192 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
700218 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
700244 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:700723 original size:26 final size:26
Alignment explanation
Indices: 700694--700746 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
700684 CCGATCTGAT
700694 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
700720 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
700746 C
1 C
700747 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:701621 original size:26 final size:26
Alignment explanation
Indices: 701571--701623 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
701561 CCGGTCCGAT
* **
701571 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
701597 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
701623 C
1 C
701624 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:708594 original size:26 final size:26
Alignment explanation
Indices: 708565--708615 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
708555 CCGATCCAAT
708565 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
708591 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
708616 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:708960 original size:26 final size:26
Alignment explanation
Indices: 708931--708983 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
708921 CCGGTCCTAT
708931 CTTAGACATGGAATGAATTCCGTATG
1 CTTAGACATGGAATGAATTCCGTATG
708957 CTTAGACATGGAATGAATTCCGTATG
1 CTTAGACATGGAATGAATTCCGTATG
708983 C
1 C
708984 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAATTCCGTATG
Found at i:708993 original size:184 final size:184
Alignment explanation
Indices: 708772--709120 Score: 466
Period size: 184 Copynumber: 1.9 Consensus size: 184
708762 TCAGGCTGGG
* **
708772 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAA
* * * * * * *
708837 CC-GATCAGAGAGGTAGAATGCGTAACCCGAGGATCCGCCCGATCCCCCCTGCGTGCTGTCGATC
66 CCAG-CCAGAGAGGCAGAATGCGCAACCCGAGGATCCACCCAATCCCCCCTACGTGCTATCGATC
* *
708901 CTGCTGCCACAACCCTCGGTCCGGTCCTATCTTAGACATGGAATGAATTCCGTAT
130 CTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACATGGAATGAATTCCGTAT
* ** *
708956 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAA
* ** *
709021 CCAGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCCATCCAATCCCCCCTACGTGCTATCGATCC
66 CCAGCCAGAGAGGCAGAATGCGCAACCCGAGGATCCACCCAATCCCCCCTACGTGCTATCGATCC
** **
709086 TGCTGCCGTAACCCTCAGTTTGGTCCGATCTTAGA
131 TGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGA
709121 TAGGGAATAA
Statistics
Matches: 140, Mismatches: 24, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
184 139 0.99
185 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAA
CCAGCCAGAGAGGCAGAATGCGCAACCCGAGGATCCACCCAATCCCCCCTACGTGCTATCGATCC
TGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACATGGAATGAATTCCGTAT
Found at i:709471 original size:26 final size:26
Alignment explanation
Indices: 709442--709494 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
709432 CTGATCCGAT
*
709442 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
709468 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
709494 C
1 C
709495 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:709725 original size:159 final size:158
Alignment explanation
Indices: 709467--709777 Score: 401
Period size: 159 Copynumber: 2.0 Consensus size: 158
709457 AACTCTGTAT
* * * * *
709467 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAATGAGCGTACTGGCACTCAG
1 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * * * * *
709532 TCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCC-CGATCCCCCTCTACGTGCTGCCGAT
66 CCGGCCAGAGAGGCAGAATACGCAAGCAGAGGATCA-CCTCGATCCCCCT-TACGTGCTGCCAAT
709596 CCCGCTGCCACAACCCTCAGTCTGGCTGGG
129 CCCGCTGCCACAACCCTCAGTCTGGCTGGG
* *
709626 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * *
709691 CCGGCTAGAGAGGTAGAATACGTAAGTCAG-GGATCACCTCGATCCCCCTTACGTGCTGCCAATC
66 CCGGCCAGAGAGGCAGAATACGCAAG-CAGAGGATCACCTCGATCCCCCTTACGTGCTGCCAATC
* ***
709755 CTGCTGTTGCAACCCTCAGTCTG
130 CCGCTGCCACAACCCTCAGTCTG
709778 ATCCGACCTT
Statistics
Matches: 130, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
158 35 0.27
159 93 0.72
160 2 0.02
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
CCGGCCAGAGAGGCAGAATACGCAAGCAGAGGATCACCTCGATCCCCCTTACGTGCTGCCAATCC
CGCTGCCACAACCCTCAGTCTGGCTGGG
Found at i:710583 original size:26 final size:26
Alignment explanation
Indices: 710554--710604 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
710544 CCGATCTGAT
710554 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
710580 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
710605 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:711315 original size:158 final size:158
Alignment explanation
Indices: 710949--711326 Score: 429
Period size: 158 Copynumber: 2.4 Consensus size: 158
710939 CTCCGTATGC
* *
710949 TTAGACATGGAATGAACTCCGTATGCCT-AGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
* **
711013 GATCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCTCCTGCATGCTGTCAATCCTG
66 GATCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCTCCTGCATGCTACCAATCCTG
** * ** *
711078 CTGCTGCAACCCTCAGTCCGATCTGATC
131 CTGCCACAACCCTCAATCCGATAGGATA
* * * * * *
711106 TTAGACAGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAGCC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * **
711171 GATCGGAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGGTCCC-CCTCGCGTGCTACCGGTCCT
66 GATCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCTCCT-GCATGCTACCAATCCT
* * *
711235 GCTGCCACAACCCATGAATCGGCTAGGA-A
130 GCTGCCACAACCC-TCAATCCGATAGGATA
* * * *
711264 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCCGGTGCTCAG
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
711327 TCGGCCGACC
Statistics
Matches: 180, Mismatches: 38, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
157 29 0.16
158 143 0.79
159 8 0.04
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.17
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
GATCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCTCCTGCATGCTACCAATCCTG
CTGCCACAACCCTCAATCCGATAGGATA
Found at i:711429 original size:26 final size:26
Alignment explanation
Indices: 711400--711452 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
711390 CTGATCCGAT
* *
711400 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
711426 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
711452 C
1 C
711453 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:712674 original size:26 final size:26
Alignment explanation
Indices: 712636--712688 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
712626 GGCTCAAAAT
712636 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
712662 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
712688 C
1 C
712689 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:714427 original size:25 final size:26
Alignment explanation
Indices: 714390--714441 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
714380 TCGGTCTGAA
714390 CTTAGACTGGGAAT-AACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
714415 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
714441 C
1 C
714442 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:714600 original size:26 final size:26
Alignment explanation
Indices: 714571--714623 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
714561 CCAGTCCGAT
714571 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
714597 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
714623 C
1 C
714624 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:715737 original size:355 final size:355
Alignment explanation
Indices: 715071--715738 Score: 794
Period size: 355 Copynumber: 1.9 Consensus size: 355
715061 TTTAAGGCAG
* * *
715071 TGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCA
1 TGATCTTAGATTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCATATGCCTAAGCCA
* *
715136 ACCCACGAAACGAACGTGCGGGCGCTCAACCGGGCAGAGAGGCAGAACGCACAAGCCAGGGATCG
66 ACCCACGAAACGAACGTACGGGCGCTCAACCGGGCAGAGAGGCAGAACGCACAAACCAGGGATCG
* * * * *
715201 ACCTGGTCCCACTCTGCGTGCTACTGGTCCTGCAGCCACAACCCTCGGTCTGGCTGGGGCTTAGA
131 ACCCGATCCCACTCTACGTGCTACTGATCCTGCAGCCACAACCCTCGGTCTGGCTGGAGCTTAGA
* * ** *
715266 CATGGAATGAACCCCGAATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGTGCTCAGCCGATCG
196 CATGGAATGAACCCCGAATGCCTAAGCCAACCCACGAAACAAGAGTGCAGGCACTAAGCCGATCG
* * ** ** * *
715331 GAGAGGCAGAATGCGTAAGCTCGGGATCGGTTCGGTCTCCCTTGTGTGCTGCCAATCCTGCTGCT
261 GAGAGGCAGAAAGCGCAAGCTCGGGATCGGCCCGACCCCCCTTGCGTGCTGCCAATCCTGCTGCT
715396 GGTCCTACTGCCGTAACCCTCGGTCTGGTT
326 GGTCCTACTGCCGTAACCCTCGGTCTGGTT
**
715426 TGATCTTAGATTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCA
1 TGATCTTAGATTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCATATGCCTAAGCCA
* * * * * * **
715491 ACCCACGGAACGAGCGTACGGGCGCTC-AGCGGGCCGGAGAGGCAGAATGCATAAACTGGGGA-C
66 ACCCACGAAACGAACGTACGGGCGCTCAACCGGG-CAGAGAGGCAGAACGCACAAACCAGGGATC
* * * *
715554 TGACCCGATCCCCAC-CTACGTGCTA-TCGATCTTGCTGCCACAACCCTCGGTTTGGTCT-GATC
130 -GACCCGAT-CCCACTCTACGTGCTACT-GATCCTGCAGCCACAACCCTCGGTCTGG-CTGGAGC
* * * * ** *
715616 TTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATTAGAGTTCAGGCACTAAGC
191 TTAGACAT-GGAATGAACCCCGAATGCCTAAGCCAACCCACGAAACAAGAGTGCAGGCACTAAGC
* *
715680 C-ATCGGAGAGGTATAAAGCGCAAGC-CGGGGATCGGCCCGACCCCCCTCTGCGTGCTGCC
255 CGATCGGAGAGGCAGAAAGCGCAAGCTC-GGGATCGGCCCGACCCCCCT-TGCGTGCTGCC
715739 GGTCCCGTTG
Statistics
Matches: 259, Mismatches: 46, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
353 1 0.00
354 43 0.17
355 208 0.80
356 7 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (355 bp):
TGATCTTAGATTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCATATGCCTAAGCCA
ACCCACGAAACGAACGTACGGGCGCTCAACCGGGCAGAGAGGCAGAACGCACAAACCAGGGATCG
ACCCGATCCCACTCTACGTGCTACTGATCCTGCAGCCACAACCCTCGGTCTGGCTGGAGCTTAGA
CATGGAATGAACCCCGAATGCCTAAGCCAACCCACGAAACAAGAGTGCAGGCACTAAGCCGATCG
GAGAGGCAGAAAGCGCAAGCTCGGGATCGGCCCGACCCCCCTTGCGTGCTGCCAATCCTGCTGCT
GGTCCTACTGCCGTAACCCTCGGTCTGGTT
Found at i:716056 original size:500 final size:498
Alignment explanation
Indices: 715398--717073 Score: 1481
Period size: 539 Copynumber: 3.3 Consensus size: 498
715388 CTGCTGCTGG
* * * *
715398 TCCTACTGCCGTAACCCTCGGTCTGGTTTGATCTTAGATTGGGAATGAACTCCATATGCTTAGAC
1 TCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
** * * * *
715463 AAGGAATGAACTCTGTATGCCTAAGCCAACCCACGGAACGAGCGTACGGGCGCTCAGCGGGCCGG
66 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCGG
* * *
715528 AGAGGCAGAATGCATAAACTGGGGACTGACCCGATCCCCACCTACGTGCTATCGATCTTGCTGCC
131 AGAGGCAGAATGCGTAAGCTGGGGACTGACCCGATCCCC-CCTACGTGCTATCGATCCTGCTGCC
* * **
715593 ACAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
195 ACAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGA
** * * * * * * *
715658 AATTAGAGTTC-AGGCACTAAGCCATCGGAGAGGTATAAAGCGCAAGCCGGGGATCGGCCCGACC
260 AACGAGCGTTCGA-GCGCTAAGCCACCGGAGAGGTATAATGTGCAAGCCGGGGATAGGCCCGATC
* * **
715722 CCCCTCTGCGTGCTGCCGGTCCCGTTGCAACAACCCTCGGTCTGGCTGGAGCTTAGAAATTTAAT
324 CCCCTCTGCGTGCTGTCGGTCCCGCTGCAACAACCCTCGGTCTGGCTGGAGCTTAGAAATGGAAT
* ** * * * * * *
715787 GAACTCCCCATGCCTAAGCCAAAACACGAAACGGGCGTGCGGGCGCTTAGCTGACCGAAAAAGCA
389 GAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGACCGGAAAGGCA
715852 AAATGCACAAGCCAGGGATCGACCCGGT-CCCCCTGCGTGCTGTCGA
454 AAATGCACAAGCC-GGGATC-ACCCGGTACCCCCTGCGTGCTGTCGA
* *
715898 TCCTACTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATG-TTCAGA
1 TCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT-AGA
* * * * * *
715962 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGGGTACGGGTGCTCAGCCGGTCG
65 CTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCG
* * * * *
716027 GAGAGGCAGAATGCGTAAGCTGGGGACTGACCC-AGTCCCCCTCTACCTACT-GCCAGTCCCGCT
130 GAGAGGCAGAATGCGTAAGCTGGGGACTGACCCGA-TCCCCC-CTACGTGCTATCGA-TCCTGCT
* ** * * * *
716090 ACCACAACCCTCGATTCGG-CTAGGGCTTAAACAT-GGAATGAACTCCCTATACCTAAGCCAACC
192 GCCACAACCCTCGATTCGGTCT-GATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACC
* * * ** * * *
716153 CACGAAACGGGCGTGCGAGCGCTCAGTCGGCCAGAGAGGTAGAATGTGCAAGTCGGGGATAGGCC
255 CACGAAACGAGCGTTCGAGCGCTAAG-CCACCGGAGAGGTATAATGTGCAAGCCGGGGATAGGCC
* * * * * * *
716218 CGGTCCCCC-CTGTGTGTTGTCGATCCTGCTGCTACAACCCTCGATCCGATCCGATCTTAGACTG
319 CGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCAACAA-CC-C--T-CG----G-TC-T-GGCT-
* * * * *
716282 GGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
371 GG-A-G--CT---TA-G---A-AAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGG
* * * * * *
716347 GCTTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCTCGGTCCCCCC
423 GCGTGCGGGCGCTCAACCGACCGGAAAGGCAAAATGCACAAGCC-GGGATCA-CCCGGTACCCCC
716412 TGCGTGCTGTCGA
486 TGCGTGCTGTCGA
** * *
716425 TCCTGTTACTGGTCCTGCTACTAGAACCCTTAGTCTGGCCCGATCTTAGACTGGGAATGAACTCC
1 TCC---TACT-G-CC-G---C---AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
* * **
716490 GTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTA
54 GTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCG
* * * * *
716554 CTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGACCGACCCGATCCCCTTCTATGTGCTAT
118 CTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCTGGGGACTGACCCGATCCCC-CCTACGTGCTAT
* * *
716619 CGATCCTGCTGCCGCAACCCTCGATCCGGTC-CATTCTTAGACTGGGAATGAACTCCATATGCCT
182 CGATCCTGCTGCCACAACCCTCGATTCGGTCTGA-TCTTAGACTGGGAATGAACTCCATATGCCT
* * ** *
716683 AAGTCAACCCACGAAACGAGCGTTCGAGCGCTGAGCCGACCGGAGAGGCATTGTGTGCAAGCCGA
246 AAGTCAACCCACGAAACGAGCGTTCGAGCGCTAAGCC-ACCGGAGAGGTATAATGTGCAAGCCGG
* * * * * * * * ** *
716748 GGATTGACCC-AGTCCTCCTCTACGAGCTGTCGGTCCCGCTACCACAACCCTCGATCCAGCTGGG
310 GGATAGGCCCGA-TCCCCCTCTGCGTGCTGTCGGTCCCGCTGCAACAACCCTCGGTCTGGCTGGA
* * *
716812 GCTTA-AACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGTGCACTCA
374 GCTTAGAA-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCA
* * *
716876 ACCGATCGGAAAGGCAAAATGCGCAAGCCGGGTATCAACCCGGTACCCCC-ACGTGCTGTCGA
438 ACCGACCGGAAAGGCAAAATGCACAAGCCGGG-ATC-ACCCGGTACCCCCTGCGTGCTGTCGA
* * * * * **
716938 TCCTGCTGTCGTAACCCTCGAT-TCGGTCTGATCTTAGACTGGGAATGAACTCTGTAAACTTAGA
1 TCCTACTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * * * *
717002 CTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATCAGCGTGCGGGCGCTCAGTCGACCG
65 CTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCG
717067 GAGAGGC
130 GAGAGGC
717074 CGGCAGGAGA
Statistics
Matches: 931, Mismatches: 181, Indels: 127
0.75 0.15 0.10
Matches are distributed among these distances:
499 8 0.01
500 244 0.26
501 143 0.15
502 1 0.00
504 1 0.00
505 2 0.00
507 1 0.00
508 1 0.00
509 2 0.00
510 5 0.01
511 1 0.00
512 3 0.00
513 19 0.02
514 85 0.09
515 4 0.00
517 2 0.00
520 4 0.00
521 1 0.00
523 2 0.00
524 1 0.00
525 4 0.00
526 75 0.08
527 23 0.02
528 2 0.00
530 6 0.01
532 2 0.00
533 1 0.00
535 2 0.00
536 2 0.00
538 3 0.00
539 254 0.27
540 27 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (498 bp):
TCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCGG
AGAGGCAGAATGCGTAAGCTGGGGACTGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCCA
CAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
ACGAGCGTTCGAGCGCTAAGCCACCGGAGAGGTATAATGTGCAAGCCGGGGATAGGCCCGATCCC
CCTCTGCGTGCTGTCGGTCCCGCTGCAACAACCCTCGGTCTGGCTGGAGCTTAGAAATGGAATGA
ACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGACCGGAAAGGCAAA
ATGCACAAGCCGGGATCACCCGGTACCCCCTGCGTGCTGTCGA
Found at i:716309 original size:26 final size:26
Alignment explanation
Indices: 716273--716325 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
716263 CCGATCCGAT
716273 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
716299 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
716325 C
1 C
716326 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:716498 original size:26 final size:26
Alignment explanation
Indices: 716469--716521 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
716459 CTGGCCCGAT
716469 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
716495 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
716521 C
1 C
716522 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:716999 original size:26 final size:26
Alignment explanation
Indices: 716970--717019 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
716960 TCGGTCTGAT
716970 CTTAGACTGGGAATGAACTCTGTAAA
1 CTTAGACTGGGAATGAACTCTGTAAA
*
716996 CTTAGACTGGGGATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
717020 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTAAA
Found at i:717401 original size:26 final size:26
Alignment explanation
Indices: 717351--717403 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
717341 CTGGTCTGAT
**
717351 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
717377 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
717403 C
1 C
717404 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:717505 original size:881 final size:882
Alignment explanation
Indices: 716298--718258 Score: 2383
Period size: 882 Copynumber: 2.2 Consensus size: 882
716288 AACTCCATAT
* * *
716298 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCT-TGCGGGCGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAG-TGTGCGGGCGCTC
* * * *
716361 AACCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAG-CTCGGTCCCCCCTGCGTGCTGTCGA
64 AACCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GATCCCCCCTGCGTGCTATCGA
* * * *
716425 TCCTGTTACTGGTCCTGCTACTAGAACCCTTAGTCTGGCCCGATCTTAGACTGGGAATGAACTCC
128 TCCTGCTGCTGGTCCTGATACTAGAACCCTCAGTCTGGCCCGATCTTAGACTGGGAATGAACTCC
* * *
716490 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTAC
193 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGTAC
** * * * *
716555 TCAGTCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGACCGACCCGATCCCCTTCTATGTGCTATC
258 TCAACCGGTCGAAGAGGCAGAATGCGTAAGCTGAGGACCGACCCGATCCCCTCCTACGTGCTATC
* * *
716620 GATCCTGCTGCCGCAACCCTCGATCCGGTCC-ATTCTTAGACTGGGAATGAACTCCATATGCCTA
323 GATCCTACTACCACAACCCTCGATCCGGTCCGA-TCTTAGACTGGGAATGAACTCCATATGCCTA
* * * ** **
716684 AGTCAACCCACGAAACGAGCGTTC-GAGCGCTGAGCCGACCGGAGAGGCATTGTGTGCAAGCC-G
387 AGTCAACCCACGAAACGAGCGTGCAG-GCGCTCAACCGACCGGAGAGGCATAATGCACAAGCCAG
* * *
716747 AGGATTGACCCAG-TCCTCCTCTACGAGCTGTCGGTCCCGCTACCACAACCCTCGATCCAGCTGG
451 -GGATCG-CCCAGATCCCCCTCTACGAGCTGTCGGTCCCACTACCACAACCCTCGATCCAGCTGG
*
716811 GGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGC-GTGCACTC
514 GGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCAG-GCACTC
* * * *
716875 AACC-GATCGGAAAGGCAAAATGCGCAAGCCGGGTATCAACCCGGTACCC-CC-ACGTGCTGTCG
578 AACCGGCT-GGAAAGGCAAAATGCACAAGCCGGGGATCAACCCGAT-CCCTCCTACGTGCTGTCG
* * * *
716937 ATCCT-GCTGTCGTAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCTGTAAACTTAG
641 AT-CTAGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAAACTTAG
* * *
717001 ACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATC-AGCGTGCGGGCGCTCAGTCGA-
705 ACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAC-AAAACGAGAGTGCGGGCACTCAG-CGAG
* * * * ** * *** *
717064 CCGGAGAGGCCGGCAGGAGAGGCATAATGTGCAAGTCGGGGATCAGCCCAGTCCACCTCTATGTG
768 CCGAAGAGGCCGACAGAAAAGGCATAATACGCAAGCCAAAGATCAGCCCAGTCCACCTCTACGTG
* ** * ** *
717129 CTGTCAATCCCGCTGTCGATCCTGCTGCCACAACCCTCGGTTTGGCTGGG
833 CTGCCAATCCCGCTACCGATCCTGCTACCACAACCCTCGGTCCGACTGGG
* *
717179 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCGCTCAA
* *
717244 CTGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCCTGCGTGCTATCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGAT-CCCCCCTGCGTGCTATCGATC
* * * * * **
717309 CTGCTGCTGGTCCTGATAC-CGCAACTCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTTG
130 CTGCTGCTGGTCCTGATACTAG-AACCCTCAGTCTGGCCCGATCTTAGACTGGGAATGAACTCCG
*
717373 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGTGCT
194 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGTACT
* * *
717438 CAACCGGTCGAAGGGGCAGAATGCGTAAGCTGAGGACCGATCCGATCCCC-CCTACGTGCTGTCG
259 CAACCGGTCGAAGAGGCAGAATGCGTAAGCTGAGGACCGACCCGATCCCCTCCTACGTGCTATCG
* *
717502 ATCCTACTACCACAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
324 ATCCTACTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
*
717567 TCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCGGAGAGGCATAATGCACAAGCCAGGGA
389 TCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGACCGGAGAGGCATAATGCACAAGCCAGGGA
* * * * * * * * *
717632 TCGGCCTGATCCCCCTCTGCGTGCTGTCGGTCTCACTGCCACAACCCTCGGTCCGGTTGGGGCTT
454 TCGCCCAGATCCCCCTCTACGAGCTGTCGGTCCCACTACCACAACCCTCGATCCAGCTGGGGCTT
* * ** **
717697 AGACATGGAATGAATTCCCTATGCCTAAGCTGACCCATGAAATGGGCATGCAGGCACTCAGTCGG
519 AAACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCAGGCACTCAACCGG
* * * * * *
717762 CTGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCTGATCCCTCCTGCGTGCTGTCGATCTAGTT
584 CTGGAAAGGCAAAATGCACAAGCCGGGGATCAACCCGATCCCTCCTACGTGCTGTCGATCTAGCT
* * **
717827 GCCGCAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
649 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAAACTTAGACTGGGGAT
* * * *
717892 GAACTTTGTATGCCTAAGTCAACCCACAAAACGTGAGTGCGGGCATTCAGCTAGCCGAAGAGGCC
714 GAACTCTGTATGCCTAAGTCAACCCACAAAACGAGAGTGCGGGCACTCAGCGAGCCGAAGAGGCC
* * *** * * * *
717957 GACCGAAAAGGCATAATACGCAAGCCAAAGATCATCTTGGTCCCCCTCTGCGTGCTGCCGATCCT
779 GACAGAAAAGGCATAATACGCAAGCCAAAGATCAGCCCAGTCCACCTCTACGTGCTGCCAATCCC
*
718022 GCTACCGGTCCTGCTACCACAACCCTCGGTCCGACTGGG
844 GCTACCGATCCTGCTACCACAACCCTCGGTCCGACTGGG
* * * *
718061 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAAAAAGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCGCTCAA
* * * * * *
718126 CCAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATAGGCCCGATCCCCCCTGTGTGCTACCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTATCGATCC
* * * * * * ** **
718191 TGCTGCTAGTCAT-ACTACCACAACCCTTGATTC-GATCAAATCTTAGACTGGGAATGAACTCCG
131 TGCTGCTGGTCCTGA-TACTAGAACCC-TCAGTCTGGCCCGATCTTAGACTGGGAATGAACTCCG
718254 TATGC
194 TATGC
718259 CTAAGCCAAC
Statistics
Matches: 915, Mismatches: 146, Indels: 38
0.83 0.13 0.03
Matches are distributed among these distances:
880 8 0.01
881 426 0.47
882 481 0.53
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (882 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTATCGATCC
TGCTGCTGGTCCTGATACTAGAACCCTCAGTCTGGCCCGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGTACTCA
ACCGGTCGAAGAGGCAGAATGCGTAAGCTGAGGACCGACCCGATCCCCTCCTACGTGCTATCGAT
CCTACTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
AACCCACGAAACGAGCGTGCAGGCGCTCAACCGACCGGAGAGGCATAATGCACAAGCCAGGGATC
GCCCAGATCCCCCTCTACGAGCTGTCGGTCCCACTACCACAACCCTCGATCCAGCTGGGGCTTAA
ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCAGGCACTCAACCGGCT
GGAAAGGCAAAATGCACAAGCCGGGGATCAACCCGATCCCTCCTACGTGCTGTCGATCTAGCTGC
CGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAAACTTAGACTGGGGATGA
ACTCTGTATGCCTAAGTCAACCCACAAAACGAGAGTGCGGGCACTCAGCGAGCCGAAGAGGCCGA
CAGAAAAGGCATAATACGCAAGCCAAAGATCAGCCCAGTCCACCTCTACGTGCTGCCAATCCCGC
TACCGATCCTGCTACCACAACCCTCGGTCCGACTGGG
Found at i:717724 original size:159 final size:157
Alignment explanation
Indices: 717376--717878 Score: 514
Period size: 158 Copynumber: 3.2 Consensus size: 157
717366 AACTTTGTAT
** *
717376 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * ** * * * *
717441 CCGGTCGAAGGGGCAGAATGCGTAAG-CTGAGGACCGATCC-GATCCCCCCTACGTGCTGTCGAT
65 CCGGCCGGAGAGGCAGAATGCACAAGCCAG-GGATCG-GCCTGATCCCCCCTGCGTGCTGTCGAT
* * *
717504 C-CTACTACCACAACCCTCGATTCGGTCCGA
128 CTC-ACTGCCACAACCCTCGGTCCGGTCCGA
*
717534 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCAGGCGCTCA
* *
717598 ACCGGCCGGAGAGGCATAATGCACAAGCCAGGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGGT
64 ACCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGATCCCCC-CTGCGTGCTGTCGAT
** *
717663 CTCACTGCCACAACCCTCGGTCCGGTTGGG
128 CTCACTGCCACAACCCTCGGTCCGGTCCGA
* * * * * * * * *
717693 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCTGACCCATGAAATGGGCATGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * * *
717758 TCGGCTGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCTGATCCCTCCTGCGTGCTGTCGATCT
65 CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCT
* * * *
717823 -AGTTGCCGCAACCTTCGGTCCGGTCTGA
130 CA-CTGCCACAACCCTCGGTCCGGTCCGA
*
717851 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
717879 TTAGACTGGG
Statistics
Matches: 288, Mismatches: 48, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
157 5 0.02
158 151 0.52
159 130 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
CGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCTC
ACTGCCACAACCCTCGGTCCGGTCCGA
Found at i:718491 original size:16 final size:16
Alignment explanation
Indices: 718470--718500 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
718460 CGGTCCCCCC
*
718470 TGCGTGCTGTCGATCA
1 TGCGTGCTATCGATCA
718486 TGCGTGCTATCGATC
1 TGCGTGCTATCGATC
718501 CTGCTACCGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.26, G:0.29, T:0.32
Consensus pattern (16 bp):
TGCGTGCTATCGATCA
Found at i:718567 original size:26 final size:26
Alignment explanation
Indices: 718531--718583 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
718521 CCGGTTCGAT
*
718531 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
718557 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
718583 C
1 C
718584 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:720148 original size:158 final size:157
Alignment explanation
Indices: 719785--720148 Score: 355
Period size: 158 Copynumber: 2.3 Consensus size: 157
719775 CATGTTACCT
** * * *
719785 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG-CTAAGTCAACCCACGAA
1 CAACCCTCAATCCGACCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * *
719849 ACGAGCGTTCGGGCATTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCT
66 ACGAGCGTGCGGGCATTGAGCCAGCCGGAGAGGCAAAATGAGCAAGCCGAGGATCAGCT--GTAT
* *
719914 CCCTCTGTGTGCTGCTGGTCCCACTGCCA
129 CCCTCTGTGTGCTGCCGATCCCACTGCCA
* * ** * *
719943 CAACCCTCGATCCGACTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 CAACCCTCAATCCGACCAGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * *
720007 AACGGGCGTGCGAGCGC-TT-AGTCGGCCGGAGAGGCAAAATGAGCAAGCCGAGGATCGGCT-TA
65 AACGAGCGTGCG-G-GCATTGAGCCAGCCGGAGAGGCAAAATGAGCAAGCCGAGGATCAGCTGT-
* * *
720069 ATCCCTCT-TACGTGCTGCCGATCCTACTGTCG
127 ATCCCTCTGT--GTGCTGCCGATCCCACTGCCA
* *
720101 CAACCCTCAATCCGGTCCA-ATCTTAGACTGGGAATGAACTCTGTATGC
1 CAACCCTCAATCC-GACCAGATCTTAGACTGGGAATGAACTCCGTATGC
720149 TTAGACTGGG
Statistics
Matches: 167, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
156 2 0.01
157 8 0.05
158 89 0.53
159 63 0.38
160 3 0.02
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
CAACCCTCAATCCGACCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCATTGAGCCAGCCGGAGAGGCAAAATGAGCAAGCCGAGGATCAGCTGTATCC
CTCTGTGTGCTGCCGATCCCACTGCCA
Found at i:720158 original size:26 final size:26
Alignment explanation
Indices: 720122--720174 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
720112 CCGGTCCAAT
720122 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
720148 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
720174 C
1 C
720175 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:720435 original size:171 final size:160
Alignment explanation
Indices: 720147--720517 Score: 377
Period size: 171 Copynumber: 2.3 Consensus size: 160
720137 AACTCTGTAT
* * * * * **
720147 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTTCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCA
* *** * *
720211 ACCGACCGGAGAGGCATAATGTGTAAGCCAGGGATCAGCCTGGACCCCCTCTACGTGCTACCGAT
65 ACCGACCAGAGAGGCATAATGCACAAGCCAGGGATCAGACTCGA--CCCTC--C-T-CTA-C-A-
*
720276 CTCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTGGG
121 -T-GCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGG
* * * *
720318 GCTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAACGAGCGTGCAGGCACTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAA
* * * *
720383 CCGACTAGAGAGGCATAATGCACAAGTCGGGGATC-GACTCGATCCTCCTCTACATGCTGTCGGT
66 CCGACCAGAGAGGCATAATGCACAAGCCAGGGATCAGACTCGACCCTCCTCTACATGCTGTCGGT
*
720447 CCCGCTACCACAACCCTCGGTCCGGCTGGG
131 CCCGCTACCACAACCCTCGGTCCGACTGGG
** * *
720477 GCTTAGACATTAAATGACCTCCCTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
720518 TGACAAGGGT
Statistics
Matches: 171, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
159 73 0.43
160 1 0.01
162 1 0.01
163 1 0.01
164 3 0.02
165 1 0.01
166 1 0.01
168 4 0.02
170 5 0.03
171 80 0.47
172 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAA
CCGACCAGAGAGGCATAATGCACAAGCCAGGGATCAGACTCGACCCTCCTCTACATGCTGTCGGT
CCCGCTACCACAACCCTCGGTCCGACTGGG
Found at i:720517 original size:514 final size:514
Alignment explanation
Indices: 719419--721479 Score: 1562
Period size: 514 Copynumber: 4.0 Consensus size: 514
719409 CCCGCTGCCA
* * * * *
719419 GTCCTGCTATCACAACCCTCGATCCGACTGTGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 GTCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * * ** * * * *
719484 CCAACCCACGAAATGAGG-GTACGGGTGCTCAGTCGATCGAAGAGGTAGAATGGGTAAGCCGAGG
66 CCAACCCATGAAACG-GGCGTGCGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGG
* * * *
719548 ATCGGCCTG--ATCCCTCTTGCATGTTGCCGATCCCGCTGCTGGTCCTGCTACCTCAACCCTCGG
130 ATCGG-CTGTAATCCCTCTTACGTGCTGCCGAT--C-CTGCT-GT-C-G------CAACCCTCGA
* * * * *
719611 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACAT-GGAATGAAGTTTGTATGC
182 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCTGTATGC
* * * ** * * ** * * ** *
719675 CTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAACCAATCAAAGAGGTAGAATGTGCAAGCC
246 CTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCATAATGCACAAGTC
* * * * * * * * * *
719740 GGGGACCGGCCTGGTCCCCC-CAAC--G-T----A-CT--AT-T-GATCATGTTACCTCAACCCT
311 GGGGATCAGCCTAGACCCCCTCTACGTGCTACCGATCTCGCTGTCGGTCCTGCTACCACAACCCT
** * *
719792 CGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCG
376 CGGTCCGA-CTGGGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
* * * * *
719856 TTCGGGCATTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATC-AGCTCGGT-CTCCCTC
440 TGCGGGCACTGAGCCACTCGGAGAGGCATAATGCGCAAGCCGGGGATCGA-CTCGATCCT-CCTC
***
719919 TGTGTGCTG-CTG
503 TACATGCTGTC-G
* * * *
719931 GTCCCACTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * *
719996 CCAACCCATGAAACGGGCGTGCGAGCGCTTAGTCGGCCGGAGAGGCAAAATGAGCAAGCCGAGGA
66 CCAACCCATGAAACGGGCGTGCGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGA
* * * *
720061 TCGGCT-TAATCCCTCTTACGTGCTGCCGATCCTACTGTCGCAACCCTCAATCCGGTCCAATCTT
131 TCGGCTGTAATCCCTCTTACGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCTGGTCCGATCTT
* **
720125 AGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACA
196 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATG
* ** *** * * *
720190 AAACGAGTGTGCGGGTTCTCAACCGACCGGAGAGGCATAATGTGTAAGCCAGGGATCAGCCTGGA
261 AAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCTAGA
720255 CCCCCTCTACGTGCTACCGATCTCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGC
326 CCCCCTCTACGTGCTACCGATCTCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACT-GGGC
* *
720320 TTAGAC-ATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAACGAGCGTGCAGGCACTGAGC
390 TTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAGC
* * *
720384 CGACT-AGAGAGGCATAATGCACAAGTCGGGGATCGACTCGATCCTCCTCTACATGCTGTCG
454 C-ACTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACTCGATCCTCCTCTACATGCTGTCG
* ** *
720445 GTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATTAAATGACCTCCCTATGCCTAAG
1 GTCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * * ** *
720510 CCAACCCATGACAA-GGGTGTGCGGGCACTCAGCCTGCTGGAGAGG-ACGAATGCGTAAGGGGTG
66 CCAACCCATGA-AACGGGCGTGCGAGCGCTCAGCCGGCCGGAGAGGCA-GAATGCGCAAGCCGAG
* *** * * * ** *
720573 GATCGACCTGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTCCTGCTGCCGCAACTATCGGT
129 GATCG-GCT-GTAATCCCT-C-T--TA-CG----TGCTGCCGATCCTGCTGTCGCAACCCTCGAT
* *
720638 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTTGTATGCC
183 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCTGTATGCC
* * * * * *
720702 TAAGCCAACCCATGAAATGAGCGTGCGGACACTCAATCGGCCGGAGAGGCAGAATGCACAAGTCG
247 TAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCATAATGCACAAGTCG
* * * * ** * * **
720767 GGGA-CCGTCCCAGTCCCCC-CTGCGTGCTGTCGATC-CTGCTGTC-G--CAGC--CCTC-AGTC
312 GGGATCAG-CCTAGACCCCCTCTACGTGCTACCGATCTC-GCTGTCGGTCCTGCTACCACAACCC
* ** *
720823 T-GGTCCGA-T---CTTAGACTAGGAATGAACTTCGTATGCCTAAGTGAA-TCATCGAAACGAGC
375 TCGGTCCGACTGGGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGC
* * * * * * *
720882 GTTCGGGCGCTGAGCCAAC-CGGAAAGGCATAATACGCATGCCGGGGATCGGC-CTAGTCC-CCT
439 GTGCGGGCACTGAGCC-ACTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACTCGA-TCCTCC-
* *
720944 TCTGCATGCAGTCG
501 TCTACATGCTGTCG
* * * * * *
720958 GTCCCGCTGCCACTACCTTCAGTTCC-GTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAA
1 GTCCCGCTACCACAACCCTC-GATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * ** ** * * *
721022 GCTAACCCATGAAACGGGCATAC-AGGTGCTCAGCCGATCAAAGAGGCAGAATGCGCAAGTCAAA
65 GCCAACCCATGAAACGGGCGTGCGA-GCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAG
* * * * * *
721086 GATCGGTCTG--GTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGATCTGGTCCGAT
129 GATCGG-CTGTAATCCCTCTTACGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCTGGTCCGAT
** *
721149 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAGCCC
193 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCC
* * * *
721214 ATGAAACGAGCGTTCGGGCGCTCAACCGATCGGAGAGACATAATGCACAAGTCGGGGATCAG-CT
258 ATGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCT
* * * * ** *
721278 CGATCCCCCTCTACATGCTACCAATCTCGCTGTCGGTCCTGCTGCCACAACCCTCAATCCAACTG
323 AGA-CCCCCTCTACGTGCTACCGATCTCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTG
* * * * *
721343 GGCATTATAC-ATGGAATGAACTCGGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCC
387 GGC-TTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT
* * * * * * *
721407 CAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA-CCCCCCCTACGTGCTGTCG
450 GAGCCACTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACTCGATCCTCCTCTACATGCTGTCG
* *
721471 ATCCTGCTA
1 GTCCCGCTA
721480 TTGGTCCTAC
Statistics
Matches: 1223, Mismatches: 253, Indels: 145
0.75 0.16 0.09
Matches are distributed among these distances:
499 1 0.00
500 134 0.11
501 148 0.12
502 19 0.02
503 3 0.00
504 1 0.00
505 4 0.00
506 2 0.00
507 4 0.00
508 6 0.00
509 11 0.01
510 5 0.00
511 5 0.00
512 142 0.12
513 262 0.21
514 269 0.22
515 14 0.01
517 6 0.00
518 8 0.01
519 4 0.00
520 3 0.00
521 2 0.00
522 5 0.00
524 2 0.00
525 21 0.02
526 141 0.12
527 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (514 bp):
GTCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCATGAAACGGGCGTGCGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGA
TCGGCTGTAATCCCTCTTACGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCTGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATG
AAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCTAGA
CCCCCTCTACGTGCTACCGATCTCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGCT
TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAGCCA
CTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACTCGATCCTCCTCTACATGCTGTCG
Found at i:720960 original size:513 final size:500
Alignment explanation
Indices: 719429--721250 Score: 1416
Period size: 513 Copynumber: 3.6 Consensus size: 500
719419 GTCCTGCTAT
* * * *
719429 CACAACCCTCGATCCGACTGTGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
1 CACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
* * * ** * ** * * * * * *
719494 AAATGAGG-GTACGGGTGCTCAGTCGATCGAAGAGGTAGAATGGGTAAGCCGAGGATCGGCCTGA
66 AAACG-GGCGTGCGAGCACTCAGCCGGCCGGAGAGGCAAAATGAGCAAGCCGAGGATC-GCCTTA
* * * * *
719558 TCCCTCTTGCATGTTGCCGATCCCGCTGCTGGTCCTGCTACCTCAACCCTCGGTCCGGTCCGATC
129 ACCC-C-T-C---TT-ACGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* *
719623 TTAGACTGGGAATGAACTCCGTCTGCTTAGACATGGAATGAAGTTTGTATGCCTAAGCCAACCCA
187 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCA
* * * * ** *
719688 TGAAATGAGCATGCGGGTGCTCAACCAATCAAAGAGGTAGAATGTGCAAGCCGGGGACCGGCCTG
252 TGAAATGAGCGTGCGGGTACTCAACCGACCGGAGAGGCAGAATGTGCAAGCCGGGGACC-GCCTG
* * * * * ** * * * * * * *
719753 GTCCCCCCAACGTACTATTGATCATGTTACCTCAACCCTCGGTCCGATCTGATCTTAGACTGGGA
316 GTCCCCCCTACGTGCTATCGATCCTGCTGTCGCAGCCCTCAGTCTGGTCCGATCTTAGACTAGGA
* **
719818 ATGAACTCCGTATGCTAAGTCAACCCACGAAACGAGCGTTCGGGCATTGAGCCAGTCGGAGAGGC
381 ATGAACTCCGTATGCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAACCGGAGAGGC
* * ** *
719883 ATAATGCGCAAGCCGAGGATCAGCTCGGTCTCCCTCTGTGTGCTG-CTGGTCCCACTGC
446 ATAATGCGCAAGCCGGGGATC-GCT-AGTC-CCCTCTGCATGCTGTC-GGTCCCGCTGC
* *
719941 CACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
1 CACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
* * * * *
720006 AAACGGGCGTGCGAGCGCTTAGTCGGCCGGAGAGGCAAAATGAGCAAGCCGAGGATCGGCTTAAT
66 AAACGGGCGTGCGAGCACTCAGCCGGCCGGAGAGGCAAAATGAGCAAGCCGAGGATCGCCTTAAC
* * * * ** *
720071 CCCTCTTACG----TGCTGCCGATCCTACTGTCGCAACCCTCAATCCGGTCCAATCTTAGACTGG
131 CCCTCTTACGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * * * ** *
720132 GAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAACGA
196 GAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTTGTATGCCTAAGCCAACCCATGAAATGA
* * * * * * *
720196 GTGTGCGGGTTCTCAACCGACCGGAGAGGCATAATGTGTAAGCCAGGGATCAGCCTGGACCCCCT
260 GCGTGCGGGTACTCAACCGACCGGAGAGGCAGAATGTGCAAGCCGGGGA-CCGCCTGGTCCCCC-
* * * **
720261 CTACGTGCTACCGAT-CTCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGA
323 CTACGTGCTATCGATCCT-GCTGTC-G--CAGC--CCTC-AGTCT-GGTCCGA-T----CTTAGA
* * * * *
720325 C-ATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAACGAGCGTGCAGGCACTGAGCCGACT
375 CTA-GGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAACC
* * * * * *
720389 AGAGAGGCATAATGCACAAGTCGGGGATCGACTCGATCCTCCTCTACATGCTGTCGGTCCCGCTA
438 GGAGAGGCATAATGCGCAAGCCGGGGATCG-CTAG-TCC-CCTCTGCATGCTGTCGGTCCCGCTG
720454 C
500 C
* ** *
720455 CACAACCCTCGGTCCGGCTGGGGCTTAGACATTAAATGACCTCCCTATGCCTAAGCCAACCCATG
1 CACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
* * * * * * * ** *
720520 ACAA-GGGTGTGCGGGCACTCAGCCTGCTGGAGAGG-ACGAATGCGTAAGGGGTGGATCGACCTG
66 A-AACGGGCGTGCGAGCACTCAGCCGGCCGGAGAGGCA-AAATGAGCAAGCCGAGGATCG-CCT-
** ** *
720583 GTCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTCCTGCTGCCGCAACTATCGGTCTGGTCCGAT
127 -TAACCCCT-C-T--TA-CGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
720648 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCC
186 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCC
** * * ** * *
720713 ATGAAATGAGCGTGCGGACACTCAATCGGCCGGAGAGGCAGAATGCACAAGTCGGGGACCGTCCC
251 ATGAAATGAGCGTGCGGGTACTCAACCGACCGGAGAGGCAGAATGTGCAAGCCGGGGACCG-CCT
* * *
720778 AGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAGCCCTCAGTCTGGTCCGATCTTAGACTAGG
315 GGTCCCCCCTACGTGCTATCGATCCTGCTGTCGCAGCCCTCAGTCTGGTCCGATCTTAGACTAGG
* * * * *
720843 AATGAACTTCGTATGCCTAAGTGAA-TCATCGAAACGAGCGTTCGGGCGCTGAGCCAACCGGAAA
380 AATGAACTCCGTATG-CTAAGTCAACCCA-CGAAACGAGCGTTCGGGCACTGAGCCAACCGGAGA
* * *
720907 GGCATAATACGCATGCCGGGGATCGGCCTAGTCCCCTTCTGCATGCAGTCGGTCCCGCTGC
443 GGCATAATGCGCAAGCCGGGGATC-G-CTAGTCCCC-TCTGCATGCTGTCGGTCCCGCTGC
* * * * * *
720968 CACTACCTTCAGTTCC-GTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCTAACCCAT
1 CACAACCCTC-GATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * ** ** ** * * * * * * *
721032 GAAACGGGCATAC-AGGTGCTCAGCCGATCAAAGAGGCAGAATGCGCAAGTCAAAGATCGGTCTG
65 GAAACGGGCGTGCGA-GCACTCAGCCGGCCGGAGAGGCAAAATGAGCAAGCCGAGGATC-GCCTT
** * * * * * * *
721096 GTCCCC-CCTGC-ATGCTG-T-C-GATCCTGCTGTCGCAACCCTCGATCTGGTCCGATCTTAGAC
128 AACCCCTCTTACGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* *** * *
721156 TGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAGCCCATGAAA
193 TGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTTGTATGCCTAAGCCAACCCATGAAA
* * ** *
721220 CGAGCGTTCGGGCGCTCAACCGATCGGAGAG
257 TGAGCGTGCGGGTACTCAACCGACCGGAGAG
721251 ACATAATGCA
Statistics
Matches: 1034, Mismatches: 226, Indels: 111
0.75 0.16 0.08
Matches are distributed among these distances:
499 1 0.00
500 145 0.14
501 131 0.13
502 1 0.00
503 1 0.00
504 9 0.01
505 3 0.00
506 4 0.00
507 1 0.00
508 6 0.01
509 3 0.00
510 1 0.00
511 12 0.01
512 109 0.11
513 216 0.21
514 193 0.19
515 5 0.00
517 6 0.01
518 8 0.01
519 4 0.00
520 3 0.00
521 2 0.00
522 5 0.00
524 1 0.00
525 20 0.02
526 143 0.14
527 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (500 bp):
CACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
AAACGGGCGTGCGAGCACTCAGCCGGCCGGAGAGGCAAAATGAGCAAGCCGAGGATCGCCTTAAC
CCCTCTTACGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAATGAG
CGTGCGGGTACTCAACCGACCGGAGAGGCAGAATGTGCAAGCCGGGGACCGCCTGGTCCCCCCTA
CGTGCTATCGATCCTGCTGTCGCAGCCCTCAGTCTGGTCCGATCTTAGACTAGGAATGAACTCCG
TATGCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAACCGGAGAGGCATAATGCGCA
AGCCGGGGATCGCTAGTCCCCTCTGCATGCTGTCGGTCCCGCTGC
Found at i:721178 original size:26 final size:26
Alignment explanation
Indices: 721149--721201 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
721139 CTGGTCCGAT
*
721149 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
721175 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
721201 C
1 C
721202 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:722046 original size:26 final size:26
Alignment explanation
Indices: 722017--722069 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
722007 CTGATCCGAT
722017 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
722043 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
722069 C
1 C
722070 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:722140 original size:868 final size:855
Alignment explanation
Indices: 720318--722140 Score: 2044
Period size: 868 Copynumber: 2.1 Consensus size: 855
720308 TCCGACTGGG
* * * *
720318 GCTTAGACATGGA-ATGAACTCCGTATGACTAAGCCAACCCACGAAACGAGCGTGCAGGCAC-TG
1 GCTTAGAC-TGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GG-ACGTC
*
720381 AGCCGACTAGAGAGGCATAATGCACAAGTCGGGGATCGACTCGATCCTCCTCTACATGCTGTCGG
63 AGCCGACCAGAGAGGCATAATGCACAAGTCGGGGATCGACTCGATCCTCCTCTACATGCTGTCGG
** ** * *
720446 TCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATTAAATGACCTCCCTATGCCTAAGC
128 TCCCGCTACCACAACCCTCAATCCAACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGC
* * * * * *
720511 CAACCCATGACAAGGGTGTGCGGGCACTCAGCCTGCTGGAGAGGACGAATGCGTAAGGGGTGGAT
193 CAACCCACGACAAGAGTGTGCGGGCACCCAGCCAGCTGGAGAGGACGAATGCGCAAGCGGTGGAT
* ** * * * * * *
720576 CGACCTGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTCCTGCTGCCGCAACTATCGGTCTG
258 CGACCCGACCCCCCCTACGTGCTATCGATCCTGCTACTGGTCCTACTACCGAAACTATCGGTCCG
* * * * * *
720641 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAG
323 ATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACAGGGAATGAACTCTGTATCCCTAAG
* * * ** * * *
720706 CCAACCCATGAAATGAGCGTGCGGACACTCAATCGGCCGGAGAGGCAGAATGCACAAGTCGGGGA
388 CCAACCCATGAAACGAGCGTGAGGACACTCAACCAACCAGAGAGGCAAAATGCACAAGCCGGGGA
* * ** * * *
720771 CCGTCCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAGCCCTCAGTCTGGTCCGATCTTA
453 CCGACCCAGTCCCCCCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCAGTCTGATCCAATCTTA
* * * * *
720836 GACTAGGAATGAACTTCGTATGCCTAAGTGAATCATCGAAACGAGCGTTCGGGCGCTGAGCCAAC
518 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCATCGAAACAAGCGTTCGGGCACTGAGCCAAC
* * * *
720901 CGGAAAGGCATAATACGCATGCCGGGGATCGGCCTAGTCCCCTTCTGCATGCAGTCGGTCCCGCT
583 CGGAAAGGCATAATACGCATGCCAGGGATCGCCCGAGTCCCCTTCTGCATGCAGTCAGTCCCGCT
* * * * * * * *
720966 GCCACTACCTTCAGTTCCGTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCTAACCCA
648 ACCACAACCCTCAGCTCCGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * ** **
721031 TGAAACGGGCATACAGGTGCTCAGCCGATCAAAGAGGCAGAATGCGCAAGTCAAAGATCGGTCTG
713 TGAAACGGGCACACAGGCGCTCAGCCGATCAAAGAGGCAGAATGCACAAGCCAAAGATCGACCCA
* ** * *
721096 GTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGA
778 ATCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGA
721161 ATGAACTCCGTAT
843 ATGAACTCCGTAT
* * * * * *
721174 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAGCCCATGAAACGAGCGTTCGGGCGCTCAA
1 GCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACG-TCAG
* * *
721239 CCGATCGGAGAGACATAATGCACAAGTCGGGGATC-AGCTCGATCCCCCTCTACATGCTACCAAT
65 CCGACCAGAGAGGCATAATGCACAAGTCGGGGATCGA-CTCGAT---CCTC--C-T-CTA-C-A-
* * * * *
721303 CTCGCTGTCGGTCCTGCTGCCACAACCCTCAATCCAACT-GGGCATTATACATGGAATGAACTCG
119 -T-GCTGTCGGTCCCGCTACCACAACCCTCAATCCAACTGGGGC-TTAGACATGAAATGAACTCC
* *
721367 GTATGCCTAAGCCAACCCACGA-AACGAGTGTGCGGGCGCCCAGCCAG-TCGGAGAGG-CAGAAT
181 CTATGCCTAAGCCAACCCACGACAA-GAGTGTGCGGGCACCCAGCCAGCT-GGAGAGGAC-GAAT
* * *
721429 GCGCAAGCCGG-GGATCGACCCGACCCCCCCTACGTGCTGTCGATCCTGCTATTGGTCCTACTAT
243 GCGCAAG-CGGTGGATCGACCCGACCCCCCCTACGTGCTATCGATCCTGCTACTGGTCCTACTAC
* * *
721493 CGAAACCT-TCGGTCCGATCTGATCTTAGATTGAGAATGAATTCCATATGCTTAGACAGGGAATG
307 CGAAA-CTATCGGTCCGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACAGGGAATG
* * *
721557 AACTCTGTATCCCTAAGCCAACCCATGAAACGAGCGTTTAGG-CGCTCAGCCAACCAGAGAGGCA
371 AACTCTGTATCCCTAAGCCAACCCATGAAACGAGCG-TGAGGACACTCAACCAACCAGAGAGGCA
* * *
721621 AAATGTACAAGCCGGGGACCGACCCTA-TCCCCTCTGCGTGCTGTCAATCCTGCTACCGTAACCC
435 AAATGCACAAGCCGGGGACCGACCC-AGTCCCCCCTGCGTGCTGTCAATCCTGCTACCGCAACCC
* *
721685 TCATTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACAAG
499 TCAGTCTGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA-CCATCGAAACAAG
* * * * * *
721749 CGTGT-GGGCACTGAGCCGATCGGAGAGGCATAATGC-CTTAGCCAGGGATCGACCCGA-TCCTT
563 CGT-TCGGGCACTGAGCCAACCGGAAAGGCATAATACGCAT-GCCAGGGATCG-CCCGAGTCC-C
* * * * *
721811 CTT-TGCGTGCTGTCAGTCCCGCTACTACAACCCTCAGACT-GGCTAGGTCTTAGACATGGAATG
624 CTTCTGCATGCAGTCAGTCCCGCTACCACAACCCTCAG-CTCCGCTAGGGCTTAGACATGGAATG
* * * * **
721874 AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGCGCGGGCGCTTAGCCGATCGGAGAGGCAG
688 AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCACACAGGCGCTCAGCCGATCAAAGAGGCAG
*** *
721939 AATGCACAAGCCGGGGATCGACCCAATCCCCCCTGCGTGCTACCGATCCTACTGTCGCAACCCTC
753 AATGCACAAGCCAAAGATCGACCCAATCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCCTC
*
722004 GGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
818 GATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
722042 GCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGGTCAG
1 GCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGAC-GTCAG
* *
722107 CCGACCAGAGAGGCA-AGATGCGCAAGCCGGGGAT
65 CCGACCAGAGAGGCATA-ATGCACAAGTCGGGGAT
722141 TGAACGTGTG
Statistics
Matches: 795, Mismatches: 140, Indels: 52
0.81 0.14 0.05
Matches are distributed among these distances:
854 1 0.00
855 6 0.01
856 83 0.10
859 4 0.01
861 1 0.00
862 1 0.00
863 3 0.00
864 1 0.00
865 1 0.00
867 12 0.02
868 663 0.83
869 19 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (855 bp):
GCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGTCAGC
CGACCAGAGAGGCATAATGCACAAGTCGGGGATCGACTCGATCCTCCTCTACATGCTGTCGGTCC
CGCTACCACAACCCTCAATCCAACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAA
CCCACGACAAGAGTGTGCGGGCACCCAGCCAGCTGGAGAGGACGAATGCGCAAGCGGTGGATCGA
CCCGACCCCCCCTACGTGCTATCGATCCTGCTACTGGTCCTACTACCGAAACTATCGGTCCGATC
CGATCTTAGACTGAGAATGAACTCCATATGCTTAGACAGGGAATGAACTCTGTATCCCTAAGCCA
ACCCATGAAACGAGCGTGAGGACACTCAACCAACCAGAGAGGCAAAATGCACAAGCCGGGGACCG
ACCCAGTCCCCCCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCAGTCTGATCCAATCTTAGAC
TAGGAATGAACTCCGTATGCCTAAGTCAACCATCGAAACAAGCGTTCGGGCACTGAGCCAACCGG
AAAGGCATAATACGCATGCCAGGGATCGCCCGAGTCCCCTTCTGCATGCAGTCAGTCCCGCTACC
ACAACCCTCAGCTCCGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
AACGGGCACACAGGCGCTCAGCCGATCAAAGAGGCAGAATGCACAAGCCAAAGATCGACCCAATC
CCCCCTGCATGCTACCGATCCTACTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATG
AACTCCGTAT
Found at i:723611 original size:26 final size:26
Alignment explanation
Indices: 723581--723633 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
723571 GTTGACTTAG
*
723581 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGGTCATCCCCAATCTAA
* *
723607 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAATCTAA
723633 G
1 G
723634 ATCGGACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAATCTAA
Found at i:723914 original size:158 final size:157
Alignment explanation
Indices: 723670--724877 Score: 741
Period size: 158 Copynumber: 7.6 Consensus size: 157
723660 GCAGGATTGG
* ** * * * * * * * **
723670 CAGCACGCAGGGGGGATCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAATG
1 CAGCACACAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCG
* * * * * * *
723735 CCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCC
66 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGATCC
*
723800 GGATCGAGGGTTGTGGCGTTGGGACCGA
131 GGATCGAGGGTTGTGGCG-TGGGATCGA
* * * * * *
723828 CAGCACAAAGGGGGGATCAGGTCGATCCCTGGCTTGCTCATTATGCCTCTTCGGCCGGCTCAGCA
1 CAGCACACAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCG
* * * * *
723893 CCCGCACACTCGTTTCATGGGTTGACTTATGCAAACGGAGTTCATTCTCA-GTCTAAGATCGGAT
66 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAG-CCCGAT
* * * ** * *
723957 -CGGACCAAGGATTACGACAGTAGGATCGA
129 CCGGATCGAGGGTTGTGGC-GTGGGATCGA
** * * * * * * * *
723986 CAGCACGTAAGGGGGATCGGGTCAAT-CCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGC
1 CAGCACACAGGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTATGCCTCTTCGACCGGCTCAGC
* * * * *
724050 GCCCGCACAC-CTGTTTCATGCGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAA
65 GCCCGCACACTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAT
** *
724114 CCGGATCGAGGGTTGTGGCAACGGGACCGA
129 CCGGATCGAGGGTTGTGGC-GTGGGATCGA
* * * * *
724144 TAGCACATAGAGGGGGATCGGGCCGATCCCCGG-TTGCGCATTATGCCTCTTCGGCCAGCTCAGC
1 CAGCACACAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGC
* * ** * * ** * *
724208 ACCCGCACGCTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATT-TTTAGTCTAAGATCAGA
65 GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG-CCCGA
* * ** *
724272 T-TGGA-CTGAGGGTTGCGGCAGTAAGATCGG
128 TCCGGATC-GAGGGTTGTGGC-GTGGGATCGA
* * * ** * * * *
724302 TAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCG
1 CAGCACACAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCG
** * * * * * *
724367 CTTGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTATCC
66 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGATCC
* ** **
724432 GGATCGAGGGTTATAGTAGCAGGATCGA
131 GGATCGAGGGTTGT-GGCGTGGGATCGA
* * * ** ** * **
724460 CAACACACAGAGGGGGACCGAGCCGATCTTTGGCTTGCGCATTATGCCTCTTCGGTCGGTTCAAT
1 CAGCACACAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGC
* * * * ** *
724525 GCCTGCACACTCATTTCATGGGTT-GCTTAGGCATACGAAGTTCATTCC-TAGTCAAAGATCGAA
65 GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCGAT
* * * ** **
724588 CCAGACCGAGGGTTGCGATAGCCGGATCGA
129 CCGGATCGAGGGTTGTG-GCGTGGGATCGA
* * * * * * * * * * *
724618 CAGTACGCAGGGGGGACCGGGACAAT-CCTCGGCTTACGTATTCTACCT-TTCTGACCAGCTGAG
1 CAGCACACAGGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTATGCCTCTTC-GACCGGCTCAG
* * * *
724681 CACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCTAG
64 CGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGA-
* * * * *
724746 T-CAGATCGATGGTTGTGGTAGTGGGACCGG
128 TCCGGATCGAGGGTTGTGG-CGTGGGATCGA
* ** * * * *
724776 TAGCATGCAGGGGCAGATCGGGCCGATCCCTGGTTTGCGCATTATGCCTCTTCGATCGGCTCAGT
1 CAGCACACAGGGG-GGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGC
* * * * * *
724841 GCCCGTATACTCGTTTCGTGGATTGACTTATGCATAC
65 GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAC
724878 TTAGACTTCC
Statistics
Matches: 785, Mismatches: 235, Indels: 59
0.73 0.22 0.05
Matches are distributed among these distances:
156 4 0.01
157 87 0.11
158 541 0.69
159 145 0.18
160 8 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
CAGCACACAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCG
CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGATCC
GGATCGAGGGTTGTGGCGTGGGATCGA
Found at i:724198 original size:316 final size:317
Alignment explanation
Indices: 723607--724877 Score: 1331
Period size: 316 Copynumber: 4.0 Consensus size: 317
723597 CCCAATCTAA
* * ** * * * * *
723607 GCATACGGAGGTCATTCCCAGTCTAAGATCGGA-CTAAACTGAGGGTTGCGGCAGCAGGATTGGC
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGACAGTAGGATCGAC
** * * * * * * **
723671 AGCACGCAGGGGGGATCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAATGC
65 AGCACGCAGGGGGGATCGGGTCAATCCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGC
* * *
723736 CCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCG
130 CCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCG
* * * *
723801 GATCGAGGGTTGTGGC-GTTGGGACCGACAGCACAAAG-GGGGGATCAGGTCGATCCCTGGCTTG
195 GATCGAGGGTTGTGGCAG-CGGGACCGACAGCACATAGAGGGGGATCGGGCCGATCCCTGGCTTG
*
723864 CTCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAT
259 CGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAT
* * * *
723923 GCAAACGGAGTTCATTCTCAGTCTAAGATCGGATCGGACCAAGGATTACGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGACA
* *
723988 GCACGTAAGGGGGATCGGGTCAATCCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCC
66 GCACGCAGGGGGGATCGGGTCAATCCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCC
** * * *
724053 CGCACACCTGTTTCATGCGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAACCGG
131 CGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGG
* * *
724118 ATCGAGGGTTGTGGCAACGGGACCGATAGCACATAGAGGGGGATCGGGCCGATCCCCGG-TTGCG
196 ATCGAGGGTTGTGGCAGCGGGACCGACAGCACATAGAGGGGGATCGGGCCGATCCCTGGCTTGCG
* * **
724182 CATTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAT
261 CATTATGCCTCTTCGGCCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAT
* * * * * * * **
724239 GCATACGGAGTTCATTTTTAGTCTAAGATCAGATTGGACTGAGGGTTGCGGCAGTAAGATCGGTA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGACA
* * * * * * *
724304 GCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCT
66 GCACGCAGGGGGGATCGGGTCAATCCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCC
* * * *
724369 TGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTATCCGG
131 CGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGG
* * * * * * * * * **
724434 ATCGAGGGTTATAGTAGCAGGATCGACAACACACAGAGGGGGACCGAGCCGATCTTTGGCTTGCG
196 ATCGAGGGTTGTGGCAGCGGGACCGACAGCACATAGAGGGGGATCGGGCCGATCCCTGGCTTGCG
* * *** * * *
724499 CATTATGCCTCTTCGGTCGGTTCAATGCCTGCACACTCATTTCATGGGTTG-CTTAG
261 CATTATGCCTCTTCGGCCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAT
* * * * * * **
724555 GCATACGAAGTTCATTC-CTAGTCAAAGATCGAACCAGACCGAGGGTTGCGATAGCCGGATCGAC
1 GCATACGGAGTTCATTCTC-AGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGAC
* * * * * * * *
724619 AGTACGCAGGGGGGACCGGGACAATCCTCGGCTTACGTATTCTACCTTTCTGACC-AGCTGAGCA
65 AGCACGCAGGGGGGATCGGGTCAATCCTCGGCTTGCGCATTCTACCTCTCCGACCGA-CTGAGCG
* * *
724683 CCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCTAGT-
129 CCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-TC
* * * * **
724747 CAGATCGATGGTTGTGGTAGTGGGACCGGTAG--CAT-GCAGGGGCAGATCGGGCCGATCCCTGG
193 CGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACATAG-AGGGG--GATCGGGCCGATCCCTGG
* ** ** * * * *
724809 TTTGCGCATTATGCCTCTTCGATCGGCTCAGTGCCCGTATACTCGTTTCGTGGATTGACTTAT
255 CTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAT
724872 GCATAC
1 GCATAC
724878 TTAGACTTCC
Statistics
Matches: 779, Mismatches: 165, Indels: 21
0.81 0.17 0.02
Matches are distributed among these distances:
313 1 0.00
314 7 0.01
316 695 0.89
317 76 0.10
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGACA
GCACGCAGGGGGGATCGGGTCAATCCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCC
CGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGG
ATCGAGGGTTGTGGCAGCGGGACCGACAGCACATAGAGGGGGATCGGGCCGATCCCTGGCTTGCG
CATTATGCCTCTTCGGCCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAT
Found at i:728829 original size:26 final size:26
Alignment explanation
Indices: 728793--728843 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
728783 TTGGCTTAGG
728793 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
*
728819 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
728844 GATCAGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:729785 original size:26 final size:26
Alignment explanation
Indices: 729754--729806 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
729744 GTTGGCTTAG
729754 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
729780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
729806 G
1 G
729807 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:731389 original size:26 final size:26
Alignment explanation
Indices: 731359--731411 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
731349 GTTGACATAG
*
731359 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
731385 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
731411 G
1 G
731412 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:732066 original size:26 final size:26
Alignment explanation
Indices: 732030--732082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
732020 GTTGACTTAG
*
732030 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
* *
732056 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
732082 G
1 G
732083 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:732411 original size:26 final size:26
Alignment explanation
Indices: 732372--732424 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
732362 GTTGGCTTAG
*
732372 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAAAGTTCATTCCTA-GTCTAA
*
732398 GCATACAAATTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
732424 G
1 G
732425 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:732957 original size:343 final size:340
Alignment explanation
Indices: 732020--733287 Score: 1120
Period size: 343 Copynumber: 3.7 Consensus size: 340
732010 GCACCTGCAT
*
732020 GTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGAT
1 GTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * ** * * * * *
732085 CGAACTAGATCGAGGGTTACGGCAGTAGGATCGAAAGCACGTAGGGGGGACCGGACCGGTCCCCG
66 CGAAC-GGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGG-GCGATCCCCG
* * * * * *
732150 GCTTGCACATTTTGCCTCTCCAACCGGCTGAGCACCCGCACGC-CCTTTCATGGGTTAGCTTAGG
129 GCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * *
732214 CATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACTGAGGTTTGTGGTAGCAAGATCGACAG
194 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CAGACTGAGGGTTGTGGCAGCAGGATCGACAG
* * * * * * * *
732279 CACGCAGAGGGGGA-CTGGGCCAATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGC
258 CAAGCAGAGGGGGATC-AGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGCGC
732343 CCGCACGCTT-GTTTCGTGG
322 CCGCACG-TTCGTTTCGTGG
* * ** * *
732362 GTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACAAATTTCATTCCTAGTCTAAGA
1 GTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
732426 TCAGACCGGACCAAGGGTTCTGGTAGCAAGACCAGCAGCAAGATTGGCAGCACGCAGGGGGGACC
65 TC-GAACGGACCAAGGG-T-T-GT-G---G--CAGCAG---GATCGACAGCACGCAGGGGGGACC
* * * *** * * *
732491 GGGCCAGTCCCCGACCTGCGCATTCTGCCTCTTCGGTTGGCTGAACGCCCACACGCTCGTTTCAT
117 GGGCGA-TCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCAT
* * * *
732556 GGGTTGGCTTAGGCATACGAACTTCATTCCATGTCTAAGCCCCAGCTAGACAGAGGGTTGTGGCA
181 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC-AGACTGAGGGTTGTGGCA
* * * * *
732621 GCAGGATCGATAGCATGCAGAGGGGGATCAGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGA
245 GCAGGATCGACAGCAAGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGG
* * *
732686 CCGGCTAAGTGCCCGCATGTTCGTTTCATGG
310 CCGGCTAAGCGCCCGCACGTTCGTTTCGTGG
* **
732717 GTTGACTTAGGGATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
*
732782 CGGATCGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCG
66 C-GAACGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGG-CGATCCCCG
* * *
732847 GCTTGTGCAGTCTACCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
129 GCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * * * *
732912 CATAGGGGGTTCATTCCATGTGTAAGCCCCAGTCGGACTGAGGGTTATGGCTGCGGGACCGACAG
194 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CAGACTGAGGGTTGTGGCAGCAGGATCGACAG
* * * * * * * *
732977 CAAGCAGAGGAGGATCAGACCGATCCTCGACTTGCCCATTACGCCTCTCTGGCCGGCTTAGCGCC
258 CAAGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGCGCC
* *
733042 CGCACGCTCATTTCGTGG
323 CGCACGTTCGTTTCGTGG
* * * * *
733060 GTTAACTTAGGCATATAGAGCTCATTCTCAGTCTAAG-AT-C--AG---------A-T-T--G--
1 GTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *** * * *
733106 -G-ACTG----AGGGTTGTAGTAGCAGGATAGACAGCATATAGGAAGGGACCGGGCCAATCCCTG
66 CGAACGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGG-GGGGACCGGG-CGATCCCCG
* * * *
733165 GCTTACGCATTCTGCCTCTTCGACCGGCTGAGCCCCCACAC-CATCATTTCATGGGTTGGCTTAG
129 GCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGC-TCGTTTCATGGGTTGGCTTAG
* * * *
733229 GTATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGA
193 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CAGACTGAGGGTTGTGGCAGCAGGA
733288 CCGATAGCGG
Statistics
Matches: 757, Mismatches: 145, Indels: 72
0.78 0.15 0.07
Matches are distributed among these distances:
317 28 0.04
318 122 0.16
321 2 0.00
322 1 0.00
326 1 0.00
328 1 0.00
329 1 0.00
330 1 0.00
339 2 0.00
341 4 0.01
342 64 0.08
343 237 0.31
344 4 0.01
346 7 0.01
348 1 0.00
349 1 0.00
351 6 0.01
352 2 0.00
353 2 0.00
354 63 0.08
355 203 0.27
356 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (340 bp):
GTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CGAACGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCGATCCCCGGC
TTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
TAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCAA
GCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGCGCCCGC
ACGTTCGTTTCGTGG
Found at i:733273 original size:159 final size:157
Alignment explanation
Indices: 732753--733287 Score: 465
Period size: 159 Copynumber: 3.4 Consensus size: 157
732743 CCCAGTCTAA
* * *
732753 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
732818 GCACGCAGG-GGGGACCGGGTCGATCCCCGGCTTGTGCAGTCTACCTCTTCGACCGGCTGAGCAC
65 GCA-ACAGGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCAC
*
732882 CCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * * * * * *
732911 GCATAGGGGGTTCATTCCATGTGTAAGCCCCAG-TCGGACTGAGGGTTATGGCTGCGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
732975 AGCAAGCA-GAGGAGGATCAGACCGAT-CCTCGACTTGCCCATTAC-GCCTC-TCTGGCCGGCTT
64 AGCAA-CAGGAGG-GGACCGGGCCGATCCCT-GGCTTGCGCATT-CTGCCTCTTC-GACCGGCTG
* * **
733036 AGCGCCCGCACGCTCATTTCGTGGGTTAACTTAG
124 AGCACCCGCACGCTCATTTCATGGGTTGGCTTAG
** * * * * * * *
733070 GCATATAGAGCTCATTCTCAGTCTAAGATCAGATTGGACTGAGGGTTGTAGTAGCAGGATAGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGACCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
733135 GCATATAGGAAGGGACCGGGCCAATCCCTGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCCC
65 GCA-ACAGGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCAC
*
733200 CCACAC-CATCATTTCATGGGTTGGCTTAG
129 CCGCACGC-TCATTTCATGGGTTGGCTTAG
* *
733229 GTATACGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGATCGGACCGAGGGTTGTGGCAGCAGGA
733288 CCGATAGCGG
Statistics
Matches: 288, Mismatches: 71, Indels: 35
0.73 0.18 0.09
Matches are distributed among these distances:
157 4 0.01
158 64 0.22
159 205 0.71
160 15 0.05
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CAACAGGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:733371 original size:26 final size:26
Alignment explanation
Indices: 733329--733394 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 26
733319 GACCGAGCTG
* *
733329 ATTCCCAG-CTTAGGCATATGGAGTTC
1 ATTCCCAGTC-TAAGCATACGGAGTTC
733355 ATT-CCACGTCTAAGCATACGGAGTTC
1 ATTCCCA-GTCTAAGCATACGGAGTTC
733381 ATTCCCAGTCTAAG
1 ATTCCCAGTCTAAG
733395 ATCGGATCGG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 3 0.09
26 28 0.80
27 4 0.11
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
ATTCCCAGTCTAAGCATACGGAGTTC
Found at i:733759 original size:26 final size:26
Alignment explanation
Indices: 733709--733759 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
733699 GTTGACTTAG
*
733709 GCATACGGAGTTCATCCCTAGTCTAC
1 GCATACGGAGTTCATCCCTAATCTAC
733735 GCATACGGAGTTCATTCCC-AATCTA
1 GCATACGGAGTTCA-TCCCTAATCTA
733760 GGATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAC
Found at i:734263 original size:26 final size:26
Alignment explanation
Indices: 734233--734285 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
734223 GTTGATTTAG
*
734233 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* *
734259 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
734285 G
1 G
734286 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:734606 original size:26 final size:26
Alignment explanation
Indices: 734576--734628 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
734566 GTTGGCTTAG
734576 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
734602 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
734628 G
1 G
734629 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:735542 original size:173 final size:170
Alignment explanation
Indices: 735224--735581 Score: 382
Period size: 173 Copynumber: 2.1 Consensus size: 170
735214 ACCACCCGTT
* *
735224 CGATCCCCAACTTGTGCATCCTGCCTCTCTGTCGACTGAGCGTCCACACGCTCGTTTCATGGGTT
1 CGAT-CCCGACTTGTGCATCCTGCCTCTCTGTCGACTGAGCGTCCACACGCTCATTTCATGGGTT
* * * * *
735289 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCTAGGGTTGCGATAGCAGG
65 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCGACCAGACCGAGGGTTACGATAGCAGG
* * *
735354 ACCAAGCAGCAGGATCGACAACATGCAG-GGGAGGACCGGGC
130 ACCAAGCAACAGGATCGACAACACGCAGAGGG-GGACCAGGC
* * * **
735395 CGATCTCCGACTTGTGCATTCTGCCTCTCCTGATCGACTGAG-GGCTCGCACGCTCATTTTGTGG
1 CGATC-CCGACTTGTGCATCCTGCCTCT-CTG-TCGACTGAGCGTC-CACACGCTCATTTCATGG
** * * * * * *
735459 GTTGGGTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCTAGCCGGATCGAGGTTTACGGTA
62 GTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCCGA-CCAGACCGAGGGTTACGATA
*
735523 GCAGGACC-AGCAACAGGATCGACAGCACGCAGAGGGGGACCAGGC
125 GCAGGACCAAGCAACAGGATCGACAACACGCAGAGGGGGACCAGGC
*
735568 TGATCCCTGACTTG
1 CGATCCC-GACTTG
735582 CGTATTATGC
Statistics
Matches: 154, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
170 1 0.01
171 24 0.16
172 10 0.06
173 95 0.62
174 24 0.16
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (170 bp):
CGATCCCGACTTGTGCATCCTGCCTCTCTGTCGACTGAGCGTCCACACGCTCATTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCGACCAGACCGAGGGTTACGATAGCAGGA
CCAAGCAACAGGATCGACAACACGCAGAGGGGGACCAGGC
Found at i:735689 original size:26 final size:26
Alignment explanation
Indices: 735652--735704 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
735642 GTTGAGTTAG
*
735652 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATATGAAGTTCATCCCTAGTCTAA
*
735678 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATATGAAGTTCATCCCTAGTCTAA
735704 G
1 G
735705 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCTAGTCTAA
Found at i:736552 original size:26 final size:26
Alignment explanation
Indices: 736516--736569 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
736506 GTTGCCTTAG
*
736516 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
736542 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
736568 GC
1 GC
736570 TCAAACCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:737053 original size:26 final size:26
Alignment explanation
Indices: 737017--737069 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
737007 GTTGGCTTAG
737017 GCATAAGGAGTCCATT-CCATGTCTAA
1 GCATAAGGAGTCCATTCCCA-GTCTAA
* *
737043 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTCCATTCCCAGTCTAA
737069 G
1 G
737070 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTCCATTCCCAGTCTAA
Found at i:737263 original size:26 final size:26
Alignment explanation
Indices: 737227--737279 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
737217 GTTGACTTAG
*
737227 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
*
737253 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
737279 G
1 G
737280 ATCTAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:739713 original size:26 final size:26
Alignment explanation
Indices: 739684--739736 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
739674 GTTGGCTGAG
* **
739684 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
739710 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
739736 G
1 G
739737 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:739911 original size:26 final size:26
Alignment explanation
Indices: 739881--739933 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
739871 GTTGACTTAG
739881 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
739907 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
739933 G
1 G
739934 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:739999 original size:197 final size:197
Alignment explanation
Indices: 739663--740020 Score: 466
Period size: 197 Copynumber: 1.8 Consensus size: 197
739653 GCCCGTACGT
* * * **
739663 TCGTTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTCCTTGTCTAAGCATACGAAGTTCATTCC
1 TCGTTTCATGGGTTGACTGAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
** ** * * * * * *
739728 CAGTCTAAGATCGGACTGGACTGAGGGTTGCAGTAGTAGGATCGACAGCACGCAGGGGGGACCGG
66 CAGTCTAAGATCAAACCAGACCGAGGGTTACAGCAGCAGGATCGACAGCACACAGGGGGGACCCG
*** * **
739793 GTTGATCCCCGGCTTATGCATTCTGCCTCTCCAGTCGACCTCTCCTGTTGACTGAGCGCCCGCGC
131 ACCGATCCCCAGCTTACACATTCTGCCTCTCCAGTCGACCTCTCCTGTTGACTGAGCGCCCGCGC
739858 GC
196 GC
* *
739860 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA-TCC
1 TCGTTTCATGGGTTGACTGAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
* *
739924 CTAGTCTAAGATCAAACCAGACCGAGGGTTACGGCGGCAGGATCGACAGCACACAGGGGGGACCC
66 C-AGTCTAAGATCAAACCAGACCGAGGGTTACAGCAGCAGGATCGACAGCACACAGGGGGGACCC
*
739989 GACCGATCCCCAGCTTGCACATTCTGCCTCTC
130 GACCGATCCCCAGCTTACACATTCTGCCTCTC
740021 TGGTCGACTG
Statistics
Matches: 134, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
196 4 0.03
197 130 0.97
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (197 bp):
TCGTTTCATGGGTTGACTGAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
CAGTCTAAGATCAAACCAGACCGAGGGTTACAGCAGCAGGATCGACAGCACACAGGGGGGACCCG
ACCGATCCCCAGCTTACACATTCTGCCTCTCCAGTCGACCTCTCCTGTTGACTGAGCGCCCGCGC
GC
Found at i:740256 original size:26 final size:26
Alignment explanation
Indices: 740227--740276 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
740217 GGCTTAGGCA
740227 TACGGAGTTCATTCC-ATGTCTAAGCG
1 TACGGAGTTCATTCCTA-GTCTAAGCG
740253 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
740277 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCG
Found at i:741785 original size:25 final size:26
Alignment explanation
Indices: 741756--741807 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
741746 GTTGACTTAG
741756 GCATAC-GAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
741781 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
741807 G
1 G
741808 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:742069 original size:159 final size:158
Alignment explanation
Indices: 741863--742156 Score: 390
Period size: 159 Copynumber: 1.9 Consensus size: 158
741853 GGGGGGATCG
* * * **
741863 GGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGCCTGAGCGCCCGTACACCCGTTTCGTG
1 GGTCGATCCCCGACTTACGCATTATGCCTCTCCGGTCGCCTCAGCGCCCCCACACCCGTTTCGTG
* * ** * * *
741928 GGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAATCGAACCGAGGGTTATGGCAG
66 GGTTGACTTAGGCATAGAGAGTTCATTCCCAGTCTAAGACCAAATCGAACCGAGGGTTACGGCAG
741993 CAGGACTTGCAGTACACATGAGGGGACC
131 CAGGACTTGCAGTACACATGAGGGGACC
* * **
742021 GGTCTGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCCCACACTGGTTTCGT
1 GGTC-GATCCCCGACTTACGCATTATGCCTCTCCGGTCGCCTCAGCGCCCCCACACCCGTTTCGT
* ** * *
742086 GGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATTAAATCGGACCGAGGGTTGCGGCA
65 GGGTTGACTTAGGCATAGAGAGTTCATTCCCAGTCTAAGACCAAATCGAACCGAGGGTTACGGCA
742151 GCAGGA
130 GCAGGA
742157 TCGACAGCAC
Statistics
Matches: 114, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
158 4 0.04
159 110 0.96
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (158 bp):
GGTCGATCCCCGACTTACGCATTATGCCTCTCCGGTCGCCTCAGCGCCCCCACACCCGTTTCGTG
GGTTGACTTAGGCATAGAGAGTTCATTCCCAGTCTAAGACCAAATCGAACCGAGGGTTACGGCAG
CAGGACTTGCAGTACACATGAGGGGACC
Found at i:742282 original size:158 final size:157
Alignment explanation
Indices: 741781--742273 Score: 524
Period size: 158 Copynumber: 3.1 Consensus size: 157
741771 CCCAGTCTAA
** * * *
741781 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
741846 ACACGCAGGGGGGATCGGG-TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGCCTGAGCGC
66 GCACACA-GGGGGATCGGGCT-GATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
741910 CCGTACACCCGTTTCGTGGGTTGGCTTAG
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
** ** ** * * ** *
741939 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAATCGAACCGAGGGTTATGGCAGCAGGACTTG-C
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGA-TCGAC
* * * * * * *
742003 AGTACACATGAGGGGACCGGTCTGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGCTCAGCG
65 AGCACACA-G-GGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
742068 CCCCCACACTGGTTTCGTGGGTTGACTTAG
128 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
* *
742098 GCATATAGAGTTCATTCCCAGTCTAAGATTAAATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** *
742163 GCACACAGGGGGTATCGGGCTGAT-TCCTAGCTTGCGCATTCTTCCTCTCCGACCGGCTGAGCGT
66 GCACACAGGGGG-ATCGGGCTGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
742227 CCGCACGCTCATTTCGTAGGTTGGCTTAG
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
742256 GCATACAGAGTTCATTCC
1 GCATACAGAGTTCATTCC
742274 ATGCCTAAGC
Statistics
Matches: 266, Mismatches: 63, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
157 7 0.03
158 130 0.49
159 128 0.48
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACACAGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:742734 original size:512 final size:499
Alignment explanation
Indices: 741693--742822 Score: 1250
Period size: 512 Copynumber: 2.2 Consensus size: 499
741683 CGATCCCCGA
* * * * * *
741693 CTTGCGC-ATCTTGCCTCTCTGGTCGGCTAAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGG
1 CTTGCGCAATC-TGCCTCTCCGATCGGCTGAGCGCC-GCACGCTCGTTTCGTAGGTTGGCTTAGG
* * *
741757 CATACGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
64 CATACGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAAC
* *
741821 AAGGGTTGCGGTAGCAGGATCGACAACACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATT
128 AAGGGTTGCGGCAGCAGGATCGACAACACGCAGGGGGGATCGGGTCGATCCCCGACTTACGCATT
* * * *
741886 CTGCCTCTCCGGTCGCCTGAGCGCCCGTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
193 CTGCCTCTCCAGTCGCCTGAGCGACCGTACACCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * *
741951 CATTCCTTGTCTAAGCCCCAATCGAACCGAGGGTTATGGCAGCAGGACTTGCAGTACACATGAGG
258 CATTCCATGTCTAAGCCCCAATCGAACCGAGGGATATGGCAGCAGGACTAGCAGTACACATGAGG
* * * * * * *
742016 GGACCGGTCTGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCCCACACTGGT
323 GGACAGGGCCGATCCCCGACTTACGCATTATGACTCTTCGATCGGCTCAGCACCCCCACACTCGT
* * * *
742081 TTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATTAAATCGGACCGAGGGTTG
388 TTCGTGGGTTGACTTACGCATACAGAGTTCATTCCCAGTCTAAGATGAAATCAGACCGAGGGTTG
* *
742146 CGGCAGCAGGATCGACAGCACACAGGGGGTATCGGGCTGATTCCTAG
453 CGGCAGCAGGATCGACAGCACACAGGGGGTACCAGGCTGATTCCTAG
* * * *
742193 CTTGCGCATTCTTCCTCTCCGACCGGCTGAGCGTCCGCACGCTCATTTCGTAGGTTGGCTTAGGC
1 CTTGCGCAATCTGCCTCTCCGATCGGCTGAGCG-CCGCACGCTCGTTTCGTAGGTTGGCTTAGGC
* *
742258 ATACAGAGTTCATTCCATGCCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCAGACC-GAACA
65 ATAC-GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAACA
* *
742322 GAGGGTTGTGGCAGCAGGACCAGCAACAGGATCGACAGCATGCAGGGGGGATCGGG-CAGATCCC
129 -AGGG-T-T----GC-GG--CAG---CAGGATCGACAACACGCAGGGGGGATCGGGTC-GATCCC
* * * *
742386 TGGCTTACGCATTCTGCCTCTTCAGTCAG-CTGAGC-ACC-TACACGTTCGTTTCGTCGGTTGGC
180 CGACTTACGCATTCTGCCTCTCCAGTC-GCCTGAGCGACCGTACAC--CCGTTTCGTCGGTTGGC
* * * * *
742448 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC-AGCTGGATCGAGGGATGTGGCAGCGGGAC
242 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATC-GAACCGAGGGATATGGCAGCAGGA-
** * *
742512 CGATAGCACGTA-A-A-G-GGGGACAGGGCCGATCGTCGGCTT-CGCATTATGACTTTTCGATCG
305 C--TAGCA-GTACACATGAGGGGACAGGGCCGATCCCCGACTTACGCATTATGACTCTTCGATCG
* * *
742572 GCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAG
367 GCTCAGCACCCCCACACTCGTTTCGTGGGTTGACTTACGCATACAGAGTTCATTCCCAGTCTAAG
* * * *
742637 ATCGAAA-CAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACATAGGGAGG-ACCAGGCTGA-T
432 AT-GAAATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGGG-GGTACCAGGCTGATT
742699 CTCT-G
495 C-CTAG
* * * * *
742704 ACTTGTGCAATCTGCCTTTTCGATCGGCTGAGTGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGG
1 -CTTGCGCAATCTGCCTCTCCGATCGGCTGAGCG-CCGCACGCTCGTTTCGTAGGTTGGCTTAGG
* *
742769 TATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
64 CATAC-GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
742823 TTTGAGCCAT
Statistics
Matches: 526, Mismatches: 74, Indels: 48
0.81 0.11 0.07
Matches are distributed among these distances:
500 60 0.11
501 54 0.10
502 1 0.00
503 1 0.00
507 2 0.00
508 2 0.00
510 2 0.00
511 8 0.02
512 232 0.44
513 152 0.29
514 3 0.01
515 1 0.00
516 5 0.01
517 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (499 bp):
CTTGCGCAATCTGCCTCTCCGATCGGCTGAGCGCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCA
TACGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAACAAG
GGTTGCGGCAGCAGGATCGACAACACGCAGGGGGGATCGGGTCGATCCCCGACTTACGCATTCTG
CCTCTCCAGTCGCCTGAGCGACCGTACACCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAATCGAACCGAGGGATATGGCAGCAGGACTAGCAGTACACATGAGGGGA
CAGGGCCGATCCCCGACTTACGCATTATGACTCTTCGATCGGCTCAGCACCCCCACACTCGTTTC
GTGGGTTGACTTACGCATACAGAGTTCATTCCCAGTCTAAGATGAAATCAGACCGAGGGTTGCGG
CAGCAGGATCGACAGCACACAGGGGGTACCAGGCTGATTCCTAG
Found at i:742806 original size:26 final size:26
Alignment explanation
Indices: 742770--742820 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
742760 TGGCTTAGGT
742770 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
742796 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
742821 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:743521 original size:26 final size:26
Alignment explanation
Indices: 743491--743543 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
743481 GTTGACTTAG
*
743491 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
743517 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
743543 G
1 G
743544 TTTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:744036 original size:26 final size:26
Alignment explanation
Indices: 743990--744039 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
743980 GGCTTAGGCG
*
743990 TACGGAGTTCATTCCATGTCTAAGCA
1 TACGGAGTTCATCCCATGTCTAAGCA
744016 TACGGAGTTCATCCCCA-GTCTAAG
1 TACGGAGTTCAT-CCCATGTCTAAG
744040 ATCAAACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCATGTCTAAGCA
Found at i:749354 original size:117 final size:118
Alignment explanation
Indices: 749147--749436 Score: 440
Period size: 117 Copynumber: 2.4 Consensus size: 118
749137 GTACAGGGAG
* *
749147 AATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTAGAAATTTTGATTTTAAAGGAAAATT
1 AATTGATACTTTCAACTTTT-CCCAAAAATA-TTTTTTTTGAAATTTTGATTTCAAAGGAAAATT
* * *
749212 GATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAA-TTT-ATTTTTAAGGAA
64 GATACTTTCAACTTTTCCCCAAAAATATTTTTCGAAAATTTTGATTTTCAAGGAA
* * *
749265 AATTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAAATTG
1 AATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAATTTTGATTTCAAAGGAAAATTG
*
749330 ATACTTTCAACTTTTCCCTAAAAATATTTTTCGAAAATTTTGATTTTCAAGGAA
65 ATACTTTCAACTTTTCCCCAAAAATATTTTTCGAAAATTTTGATTTTCAAGGAA
749384 AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTTGATTT
1 AATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTTG-AAATTTTGATTT
749437 TCATTTAAAG
Statistics
Matches: 156, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
117 66 0.42
118 31 0.20
119 48 0.31
120 11 0.07
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (118 bp):
AATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAATTTTGATTTCAAAGGAAAATTGA
TACTTTCAACTTTTCCCCAAAAATATTTTTCGAAAATTTTGATTTTCAAGGAA
Found at i:749389 original size:59 final size:60
Alignment explanation
Indices: 749147--749439 Score: 411
Period size: 59 Copynumber: 4.9 Consensus size: 60
749137 GTACAGGGAG
* *
749147 AATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTT-AGAAATTTTGATTTTAAAGGAA
1 AATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGA-AAATTTTGATTTTCAAGGAA
* * *
749208 AATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAA-TTT-ATTTTTAAGGAA
1 AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTTGATTTTCAAGGAA
* * *
749265 AATTGATATTTTCAACTTTT-CCTCAAAAATATTTTTTTTG-AAACTTTGATTTCCAAGGAA
1 AATTGATACTTTCAACTTTTCCCT-AAAAATA-TTTTTTTGAAAATTTTGATTTTCAAGGAA
*
749325 AATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTCGAAAATTTTGATTTTCAAGGAA
1 AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTTGATTTTCAAGGAA
749384 AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTTGATTTTCA
1 AATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGAAAATTTTGATTTTCA
749440 TTTAAAGAAA
Statistics
Matches: 211, Mismatches: 11, Indels: 20
0.87 0.05 0.08
Matches are distributed among these distances:
56 2 0.01
57 37 0.18
58 12 0.06
59 68 0.32
60 36 0.17
61 56 0.27
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (60 bp):
AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTTGATTTTCAAGGAA
Found at i:749475 original size:11 final size:10
Alignment explanation
Indices: 749454--749520 Score: 66
Period size: 11 Copynumber: 6.6 Consensus size: 10
749444 AAGAAAATAG
749454 AATAATAAAAA
1 AATAA-AAAAA
*
749465 AATAAAGAAA
1 AATAAAAAAA
749475 AAT--AAAAA
1 AATAAAAAAA
*
749483 AATAAAGAAA
1 AATAAAAAAA
*
749493 AGTAAAAATAA
1 AATAAAAA-AA
749504 AATAAAAATAA
1 AATAAAAA-AA
749515 AATAAA
1 AATAAA
749521 GATAAAAAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
8 7 0.15
10 17 0.36
11 23 0.49
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (10 bp):
AATAAAAAAA
Found at i:749478 original size:18 final size:18
Alignment explanation
Indices: 749452--749600 Score: 88
Period size: 18 Copynumber: 7.8 Consensus size: 18
749442 TAAAGAAAAT
*
749452 AGAATAATAAAAAAATAA
1 AGAAAAATAAAAAAATAA
749470 AGAAAAATAAAAAAATAA
1 AGAAAAATAAAAAAATAA
* *
749488 AGAAAAGTAAAAATA-AA
1 AGAAAAATAAAAAAATAA
*
749505 ATAAAAATAAAATAAAGATAA
1 AGAAAAAT-AAA-AAA-ATAA
*
749526 A-AAGAATATTAAATAAACCTAA
1 AGAA-AA-A-TAAA-AAA-ATAA
**
749548 TCTAATAAATAAAAAAATAA
1 -AGAA-AAATAAAAAAATAA
* * *
749568 AAAAAAATAAACAAAGAA
1 AGAAAAATAAAAAAATAA
749586 ATG-AAAATAAAAAAA
1 A-GAAAAATAAAAAAA
749601 AATTCAAAAA
Statistics
Matches: 104, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
17 8 0.08
18 57 0.55
19 4 0.04
20 6 0.06
21 8 0.08
22 15 0.14
23 2 0.02
24 4 0.04
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (18 bp):
AGAAAAATAAAAAAATAA
Found at i:749499 original size:6 final size:5
Alignment explanation
Indices: 749447--749527 Score: 53
Period size: 5 Copynumber: 15.8 Consensus size: 5
749437 TCATTTAAAG
* *
749447 AAAAT AGAAT AATAAA AAAAT AAAGA- AAAAT -AAA- AAAAT AAAGA-
1 AAAAT AAAAT AA-AAT AAAAT AAA-AT AAAAT AAAAT AAAAT AAA-AT
*
749491 AAAGT AAAAAT AAAAT AAAAAT AAAAT AAAGAT AAAA
1 AAAAT -AAAAT AAAAT -AAAAT AAAAT AAA-AT AAAA
749528 AGAATATTAA
Statistics
Matches: 60, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
4 7 0.12
5 33 0.55
6 20 0.33
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:749525 original size:11 final size:10
Alignment explanation
Indices: 749462--749527 Score: 64
Period size: 11 Copynumber: 6.5 Consensus size: 10
749452 AGAATAATAA
749462 AAAAATAAAG
1 AAAAATAAAG
749472 AAAAAT-AA-
1 AAAAATAAAG
749480 AAAAATAAAG
1 AAAAATAAAG
* *
749490 AAAAGTAAAA
1 AAAAATAAAG
*
749500 ATAAAATAAAA
1 A-AAAATAAAG
749511 ATAAAATAAAG
1 A-AAAATAAAG
749522 ATAAAA
1 A-AAAA
749528 AGAATATTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
8 6 0.12
9 4 0.08
10 15 0.31
11 24 0.49
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (10 bp):
AAAAATAAAG
Found at i:749525 original size:17 final size:17
Alignment explanation
Indices: 749463--749528 Score: 66
Period size: 16 Copynumber: 3.9 Consensus size: 17
749453 GAATAATAAA
* *
749463 AAAATAAAGAAAAATAAA
1 AAAATAAAGATAAA-AAT
*
749481 AAAATAAAG--AAAAGT
1 AAAATAAAGATAAAAAT
749496 AAAAATAAA-ATAAAAAT
1 -AAAATAAAGATAAAAAT
749513 AAAATAAAGATAAAAA
1 AAAATAAAGATAAAAA
749529 GAATATTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
15 1 0.02
16 19 0.46
17 12 0.29
18 9 0.22
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (17 bp):
AAAATAAAGATAAAAAT
Found at i:749602 original size:29 final size:28
Alignment explanation
Indices: 749561--749615 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 28
749551 AATAAATAAA
749561 AAAATAAAAAAAAAT-AAACAAAGAAATG
1 AAAATAAAAAAAAATCAAA-AAAGAAATG
749589 AAAATAAAAAAAAATTCAAAAAAGAAA
1 AAAATAAAAAAAAA-TCAAAAAAGAAA
749616 AAACTGGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 14 0.56
29 8 0.32
30 3 0.12
ACGTcount: A:0.80, C:0.04, G:0.05, T:0.11
Consensus pattern (28 bp):
AAAATAAAAAAAAATCAAAAAAGAAATG
Found at i:749975 original size:20 final size:20
Alignment explanation
Indices: 749942--749984 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
749932 TGAAGATTCA
*
749942 TCGAATTCTAGGTTTTATCG
1 TCGAAATCTAGGTTTTATCG
* *
749962 TCGAAATCTGGGTTTTTTCG
1 TCGAAATCTAGGTTTTATCG
749982 TCG
1 TCG
749985 GAAGTTCGTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.16, C:0.16, G:0.23, T:0.44
Consensus pattern (20 bp):
TCGAAATCTAGGTTTTATCG
Found at i:750642 original size:31 final size:30
Alignment explanation
Indices: 750558--750643 Score: 79
Period size: 31 Copynumber: 2.8 Consensus size: 30
750548 ACCCAAAAAT
750558 ATATT-ACAAAAAAAAATAATATAATAATAA
1 ATATTAACAAAAAAAAATAA-ATAATAATAA
* * *
750588 ATATGTAAC-TATATAAATAAAATACAT-ATAA
1 ATAT-TAACAAAAAAAAAT-AAATA-ATAATAA
750619 ATATTAACAAAAAAAAAATAAATAA
1 ATATTAAC-AAAAAAAAATAAATAA
750644 ATAAAGATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
30 9 0.20
31 23 0.52
32 12 0.27
ACGTcount: A:0.67, C:0.05, G:0.01, T:0.27
Consensus pattern (30 bp):
ATATTAACAAAAAAAAATAAATAATAATAA
Found at i:750682 original size:9 final size:10
Alignment explanation
Indices: 750662--750705 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
750652 ATACATATGT
750662 TAATACATAA
1 TAATACATAA
750672 TAATA-ATAA
1 TAATACATAA
750681 TAAATA-ATAA
1 T-AATACATAA
750691 -AATACATAA
1 TAATACATAA
750700 -AATACA
1 TAATACA
750706 AAAGGAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 4 0.12
9 15 0.47
10 13 0.41
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (10 bp):
TAATACATAA
Found at i:750687 original size:16 final size:15
Alignment explanation
Indices: 750662--750700 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
750652 ATACATATGT
*
750662 TAATACATAATAATAA
1 TAATAAATAATAA-AA
750678 TAATAAATAATAAAA
1 TAATAAATAATAAAA
750693 TACATAAA
1 TA-ATAAA
750701 ATACAAAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (15 bp):
TAATAAATAATAAAA
Found at i:750904 original size:1 final size:1
Alignment explanation
Indices: 750893--750945 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
750883 AACATTGTCA
* * * * * *
750893 TTTTTTGTTTTTTTTTGTTTTTTTGTGTTTTTTTTGTTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
750946 GACCAAAGCT
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (1 bp):
T
Found at i:750906 original size:10 final size:10
Alignment explanation
Indices: 750893--750945 Score: 74
Period size: 10 Copynumber: 5.5 Consensus size: 10
750883 AACATTGTCA
750893 TTTTTTGTTT
1 TTTTTTGTTT
750903 TTTTTTGTTT
1 TTTTTTGTTT
*
750913 TTTTGTG-TT
1 TTTTTTGTTT
750922 TTTTTTGTTT
1 TTTTTTGTTT
*
750932 TTGTTT-TTT
1 TTTTTTGTTT
750941 TTTTT
1 TTTTT
750946 GACCAAAGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
9 15 0.39
10 23 0.61
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:750916 original size:18 final size:18
Alignment explanation
Indices: 750893--750946 Score: 83
Period size: 18 Copynumber: 2.9 Consensus size: 18
750883 AACATTGTCA
750893 TTTTTTGTTTTTTTTTGT
1 TTTTTTGTTTTTTTTTGT
750911 TTTTTTGTGTTTTTTTTGT
1 TTTTTTGT-TTTTTTTTGT
750930 TTTTGTT-TTTTTTTTTG
1 TTTT-TTGTTTTTTTTTG
750947 ACCAAAGCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 17 0.50
19 15 0.44
20 2 0.06
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (18 bp):
TTTTTTGTTTTTTTTTGT
Found at i:751096 original size:81 final size:82
Alignment explanation
Indices: 750953--751412 Score: 676
Period size: 81 Copynumber: 5.6 Consensus size: 82
750943 TTTGACCAAA
* * *
750953 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAA-GTAAATTGCTCCTCTAAACAGAGGCACCA
*
751018 CAACTTTGAAAATAAATT
65 CGACTTTGAAAATAAATT
* * *
751036 GATCCGCTAAATAGAGGCACCACGACTTTG-GAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
751100 GACTTTGAAAGTAAATT
66 GACTTTGAAAATAAATT
* *
751117 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTACACAAAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
751182 GACTTTGAAAAATAAATT
66 GACTTTG-AAAATAAATT
* * *
751200 GCTCCTCTAAACAGAGGCACCACAACCTT--GAAAGTAAATTGCTCCTCTAAATAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
751263 GACTTTGGAAAATAAGTT
66 GACTTT-GAAAATAAATT
* *
751281 GCTCTTCTAAACAGAGGCACCACAACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
751346 GACTTTGAGAAAGTAAATT
66 GACTTTGA-AAA-TAAATT
* *
751365 GCTTCTCTAAACAGAGGCACCATGACTTTG-GAAAAGTAAATTGCTCCT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAG-AAAGTAAATTGCTCCT
751413 TGACAATCAT
Statistics
Matches: 341, Mismatches: 28, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
81 144 0.42
82 46 0.13
83 104 0.30
84 47 0.14
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (82 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGAAAATAAATT
Found at i:751206 original size:123 final size:123
Alignment explanation
Indices: 750953--751412 Score: 656
Period size: 123 Copynumber: 3.7 Consensus size: 123
750943 TTTGACCAAA
* * *
750953 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTT-AGAAA-GTAAATTGCTCCTCTAAACAGAGGCACCA
* * * * * *
751018 CAACTTT-GAAAATAAATTGATCCGCTAAATAGAGGCACCACGACTTTGGAAAGTAAATT
64 CGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
751077 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
* * *
751141 ACTTTGAGAAAGTAAATTGCTCCTCTACACAAAGGCACCACGACTTTGAAAAATAAATT
66 ACTTTG-GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* * *
751200 GCTCCTCTAAACAGAGGCACCACAACCTT-GAAAGTAAATTGCTCCTCTAAATAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
* * * *
751264 ACTTTGGAAAATAAGTTGCTCTTCTAAACAGAGGCACCACAACTTTGAGAAAGTAAATT
66 ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAGTAAATT
* *
751323 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTTCTCTAAACAGAGGCACCAT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-AGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
751388 GACTTTGGAAAAGTAAATTGCTCCT
65 GACTTTGG-AAAGTAAATTGCTCCT
751413 TGACAATCAT
Statistics
Matches: 300, Mismatches: 30, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
121 34 0.11
122 40 0.13
123 147 0.49
124 27 0.09
125 39 0.13
126 13 0.04
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (123 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:751292 original size:164 final size:164
Alignment explanation
Indices: 750953--751412 Score: 699
Period size: 164 Copynumber: 2.8 Consensus size: 164
750943 TTTGACCAAA
* * *
750953 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAA-GTAAATTGCTCCTCTAAACAGAGGCACCA
* * * *
751018 CAACTTTG-AAAATAAATTGATCCGCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCC
65 CGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCC
*
751082 TCTAAACAGAGGCACCACGACTTTGAAAGTAAATT
130 TCTAAACAGAGGCACCACGACTTTGAAAATAAATT
* *
751117 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTACACAAAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* *
751182 GACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACCTT-GAAAGTAAATTGCTCCT
66 GACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCT
* *
751246 CTAAATAGAGGCACCACGACTTTGGAAAATAAGTT
131 CTAAACAGAGGCACCACGACTTT-GAAAATAAATT
* *
751281 GCTCTTCTAAACAGAGGCACCACAACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* * *
751346 GACTTTGAGAAAGTAAATTGCTTCTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATTGCTC
66 GACTTTGA-AAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTC
751411 CT
129 CT
751413 TGACAATCAT
Statistics
Matches: 268, Mismatches: 23, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
163 72 0.27
164 145 0.54
165 34 0.13
166 1 0.00
167 16 0.06
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (164 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCT
CTAAACAGAGGCACCACGACTTTGAAAATAAATT
Found at i:751735 original size:43 final size:42
Alignment explanation
Indices: 751677--751758 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 42
751667 TTTGGCAAAC
* *
751677 TTGGAATTCATATCC-AAAAGTCTAAAGCTTTTCATTTGAATT
1 TTGGAATTCACATCCAAAAATTC-AAAGCTTTTCATTTGAATT
751719 TTGGAAATTCACATCCAAAAATTCAAAGCTTTTCATTTGA
1 TTGG-AATTCACATCCAAAAATTCAAAGCTTTTCATTTGA
751759 GTTCAAAGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 4 0.11
43 26 0.72
44 6 0.17
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (42 bp):
TTGGAATTCACATCCAAAAATTCAAAGCTTTTCATTTGAATT
Found at i:751990 original size:22 final size:21
Alignment explanation
Indices: 751946--752000 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
751936 TCACTCCTCC
751946 AAGATTCTCATTTTGAAATTCA
1 AAGATTCTCA-TTTGAAATTCA
**
751968 AAGATTCTCATTTGAGTTCTCA
1 AAGATTCTCATTTGAAAT-TCA
*
751990 AAAATTCTCAT
1 AAGATTCTCAT
752001 CAAAACATTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 6 0.21
22 23 0.79
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (21 bp):
AAGATTCTCATTTGAAATTCA
Found at i:753118 original size:20 final size:20
Alignment explanation
Indices: 753095--753132 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
753085 CATTTTCTCA
753095 TTTTTTCCTTCTTTTTTTTC
1 TTTTTTCCTTCTTTTTTTTC
**
753115 TTTTTTTTTTCTTTTTTT
1 TTTTTTCCTTCTTTTTTT
753133 CATCATCTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (20 bp):
TTTTTTCCTTCTTTTTTTTC
Found at i:753120 original size:10 final size:11
Alignment explanation
Indices: 753095--753132 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
753085 CATTTTCTCA
*
753095 TTTTTTCCTTCT
1 TTTTTTTCTT-T
753107 TTTTTTTCTTT
1 TTTTTTTCTTT
753118 TTTTTTTCTTT
1 TTTTTTTCTTT
753129 TTTT
1 TTTT
753133 CATCATCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:753130 original size:12 final size:12
Alignment explanation
Indices: 753095--753132 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
753085 CATTTTCTCA
* *
753095 TTTTTTCCTTCT
1 TTTTTTTCTTTT
753107 TTTTTTTC-TTT
1 TTTTTTTCTTTT
753118 TTTTTTTCTTTT
1 TTTTTTTCTTTT
753130 TTT
1 TTT
753133 CATCATCTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:757247 original size:59 final size:58
Alignment explanation
Indices: 757059--757405 Score: 491
Period size: 60 Copynumber: 5.9 Consensus size: 58
757049 GTTCTTGTAC
* * *
757059 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTATTTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTCT
* * *
757116 AAGGAAAATTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCC
1 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAAATTT-ATTTCT
* *
757176 AAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTCT
1 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTTTGAAAATTTATTTCT
*
757235 AAGGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTGAAAATTTATTTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAAAATTTATTTCT
* * * *
757293 AAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTTTGAAACCTTGATTTCC
1 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTTGAAA-ATTTATTTCT
*
757354 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTGAAAATTT
1 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTT
757406 TGATTTTCAT
Statistics
Matches: 258, Mismatches: 23, Indels: 17
0.87 0.08 0.06
Matches are distributed among these distances:
57 35 0.14
58 57 0.22
59 62 0.24
60 63 0.24
61 41 0.16
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (58 bp):
AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTCT
Found at i:757247 original size:119 final size:116
Alignment explanation
Indices: 757058--757411 Score: 487
Period size: 119 Copynumber: 3.0 Consensus size: 116
757048 TGTTCTTGTA
* * * *
757058 CAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAA
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTGAAAATTTATTTCTAAGGAAA
* *
757123 ATTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTC
66 ATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAAATTTGATTTC
*
757175 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTCTAAGGA
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAT--TTTTTTTGAAAATTTATTTCTAAGGA
*
757240 AAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTGAAAATTT-ATTTT
64 AAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAAAATTTGATTTC
* * * * *
757292 TAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTTTGAAACCTTGATTTCCAAG
1 CAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAA-A-TTTTTTTTGAAA-ATTTATTTCTAAG
*
757357 GAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTGAAAATTTTGATTT
62 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAA-TTTGATTT
757412 TCATTTAAAG
Statistics
Matches: 212, Mismatches: 15, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
117 67 0.32
118 30 0.14
119 107 0.50
120 4 0.02
121 4 0.02
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.45
Consensus pattern (116 bp):
CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTGAAAATTTATTTCTAAGGAAA
ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTGATTTC
Found at i:757453 original size:18 final size:18
Alignment explanation
Indices: 757432--757491 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
757422 AAAATATAAT
*
757432 AATAAAAAAATAAATAAA
1 AATAAAAAAATAAAGAAA
757450 AATAAAAAAATAAAGAAA
1 AATAAAAAAATAAAGAAA
* *
757468 AGTAAAACAA-AAAGAAA
1 AATAAAAAAATAAAGAAA
757485 AATAAAA
1 AATAAAA
757492 TAAAGATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
17 13 0.34
18 25 0.66
ACGTcount: A:0.82, C:0.02, G:0.05, T:0.12
Consensus pattern (18 bp):
AATAAAAAAATAAAGAAA
Found at i:757455 original size:6 final size:6
Alignment explanation
Indices: 757422--757503 Score: 55
Period size: 6 Copynumber: 13.8 Consensus size: 6
757412 TCATTTAAAG
* * *
757422 AAAATAT AATAAT AAAAA- AATAAAT AAAAAT AAAAA- AATAAAG AAAAGT
1 AAAA-AT AAAAAT AAAAAT AA-AAAT AAAAAT AAAAAT AA-AAAT AAAAAT
* * *
757471 -AAAAC AAAAAG AAAAAT -AAAAT AAAGAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
757504 GAATATTAAA
Statistics
Matches: 59, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
5 12 0.20
6 40 0.68
7 7 0.12
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:757468 original size:11 final size:10
Alignment explanation
Indices: 757429--757495 Score: 57
Period size: 11 Copynumber: 6.6 Consensus size: 10
757419 AAGAAAATAT
757429 AATAATAAAAA
1 AATAA-AAAAA
*
757440 AATAAATAAA
1 AATAAAAAAA
757450 AAT--AAAAA
1 AATAAAAAAA
*
757458 AATAAAGAAA
1 AATAAAAAAA
*
757468 AGTAAAACAAA
1 AATAAAA-AAA
*
757479 AAGAAAAATAA
1 AATAAAAA-AA
757490 AATAAA
1 AATAAA
757496 GATAAAAAGA
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
8 7 0.16
10 17 0.39
11 20 0.45
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.13
Consensus pattern (10 bp):
AATAAAAAAA
Found at i:757491 original size:23 final size:23
Alignment explanation
Indices: 757417--757508 Score: 77
Period size: 23 Copynumber: 4.1 Consensus size: 23
757407 GATTTTCATT
* *
757417 TAAAGAAAATATAATAATAA-AA
1 TAAAGAAAATAAAATAAAAAGAA
*
757439 -AAA-TAAATAAAAATAAAAA-AA
1 TAAAGAAAAT-AAAATAAAAAGAA
*
757460 TAAAGAAAAGTAAAACAAAAAGAA
1 TAAAGAAAA-TAAAATAAAAAGAA
*
757484 -AAATAAAATAAAGATAAAAAGAA
1 TAAAGAAAATAAA-ATAAAAAGAA
757507 TA
1 TA
757509 TTAAATAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
20 4 0.07
21 13 0.23
22 7 0.12
23 28 0.50
24 4 0.07
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (23 bp):
TAAAGAAAATAAAATAAAAAGAA
Found at i:758601 original size:16 final size:15
Alignment explanation
Indices: 758582--758620 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
758572 ATAAATATGT
*
758582 TAATACATAATAATAA
1 TAATAAATAATAA-AA
758598 TAATAAATAATAAAA
1 TAATAAATAATAAAA
758613 TACATAAA
1 TA-ATAAA
758621 ATACAAAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (15 bp):
TAATAAATAATAAAA
Found at i:758602 original size:9 final size:10
Alignment explanation
Indices: 758582--758625 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
758572 ATAAATATGT
758582 TAATACATAA
1 TAATACATAA
758592 TAATA-ATAA
1 TAATACATAA
758601 TAAATA-ATAA
1 T-AATACATAA
758611 -AATACATAA
1 TAATACATAA
758620 -AATACA
1 TAATACA
758626 AAAGGAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 4 0.12
9 15 0.47
10 13 0.41
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (10 bp):
TAATACATAA
Found at i:760857 original size:159 final size:159
Alignment explanation
Indices: 760568--760858 Score: 388
Period size: 159 Copynumber: 1.8 Consensus size: 159
760558 TGACAACTGA
* * * * *
760568 CTTGCGCATTATGCTTCTCCAGCCGGCTCAGCGCCTGCAGGCTCGTTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTATGCCTCTCCAGCCAGCTCAGCACCCGAAGGCTCGTTTCGTGGGTTGACTTAGGC
* * * * ** **
760633 ATACGGAGTTCATTTCCAGTCTAAAATCAGATCGAACCGAGGGTTGTGGCAGTGGGATCGATAGC
66 ATACAGAGTTCATTCCCAATCTAAAATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGATAGC
760698 ACGTAGAGAGGGATCGAGCTGATCCTCGG
131 ACGTAGAGAGGGATCGAGCTGATCCTCGG
* *
760727 CTTGCGCATTATGCCTCTCC-GATCAGCTCAGCACCCGAATGCTCGTTTCGTGGGTTGACTTAGG
1 CTTGCGCATTATGCCTCTCCAG-CCAGCTCAGCACCCGAAGGCTCGTTTCGTGGGTTGACTTAGG
* * *
760791 CATACAGAGTTCATTCCCAATCTAAGATCAGACC-AGACCGAGGGTTGCAGTAGCAGGATTGATA
65 CATACAGAGTTCATTCCCAATCTAAAATCAGACCGA-ACCGAGGGTTGCAGCAGCAGGATCGATA
760855 GCAC
129 GCAC
760859 ACAGGGGGAC
Statistics
Matches: 112, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
158 2 0.02
159 110 0.98
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (159 bp):
CTTGCGCATTATGCCTCTCCAGCCAGCTCAGCACCCGAAGGCTCGTTTCGTGGGTTGACTTAGGC
ATACAGAGTTCATTCCCAATCTAAAATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGATAGC
ACGTAGAGAGGGATCGAGCTGATCCTCGG
Found at i:760979 original size:26 final size:26
Alignment explanation
Indices: 760949--760999 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
760939 TGGCTTAGGC
760949 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
760975 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
761000 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:761538 original size:26 final size:26
Alignment explanation
Indices: 761498--761550 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
761488 TTTGGCTTAG
*
761498 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGATCATTCCCA-GTCTAA
*
761524 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
761550 G
1 G
761551 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:762705 original size:158 final size:158
Alignment explanation
Indices: 762225--762726 Score: 498
Period size: 158 Copynumber: 3.2 Consensus size: 158
762215 CCTAATCTAA
*
762225 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-T-TACGACAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTA-G-CAGCAGGATCGA
* * ** * * *
762288 TAGCACGCAGAGGGGATTGGGCCAATCCCC-AGCTTGTGCATTCTACCTCTTCGACTGGCTAAGC
64 CAGCACGCAGGGGGGACCGGGTCAATCCCCGA-CTTGCGCATTCTACCTCTTCGACCGGCTAAGC
*
762352 GCCCGT-ATGCCCATTTCATGGGTTGGCTTAG
128 GCCC-TCATGCTCATTTCATGGGTTGGCTTAG
* * ** ** * * * *
762383 GCATAGGGAGTTCATT-CCATGTGTAAGCCCCAG-CCGGATTGAGGGTTGTGGCAGCGGGATTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTAGCAGCAGGATCGA
** * * * * * * *
762446 CAGCACGCAGAGGGGGACCGAATCGATCCTCGGCTTGCGCATTATGCCT-TTCTAACCGGCTCAG
64 CAGCACGCAG-GGGGGACCGGGTCAATCCCCGACTTGCGCATTCTACCTCTTC-GACCGGCTAAG
* * * *
762510 CACCCGCACGCTCATTTCATGGGTTGACTTAG
127 CGCCCTCATGCTCATTTCATGGGTTGGCTTAG
* * *
762542 GCATACGGAGTTCATTCCCAATCTAAGATCTGACCGGACCGGGGGTTGTAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCAGGATCGACA
* * * *
762607 GCATGCAGGGGGGACCGGGTCAATCCCCGACTTGCGCATTCTACCTCTTCGACCGACTGAGTGCC
66 GCACGCAGGGGGGACCGGGTCAATCCCCGACTTGCGCATTCTACCTCTTCGACCGGCTAAGCGCC
* *
762672 CTCATGTTCGTTTCATGGGTTGGCTTAG
131 CTCATGCTCATTTCATGGGTTGGCTTAG
762700 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
762727 CATACAGAGT
Statistics
Matches: 268, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.02
158 139 0.52
159 119 0.44
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCAATCCCCGACTTGCGCATTCTACCTCTTCGACCGGCTAAGCGCC
CTCATGCTCATTTCATGGGTTGGCTTAG
Found at i:762730 original size:26 final size:26
Alignment explanation
Indices: 762700--762752 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
762690 GTTGGCTTAG
*
762700 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
762726 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
762752 G
1 G
762753 ATCGGACCGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.