Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 53 of 93
Found at i:6760088 original size:3 final size:3
Alignment explanation
Indices: 6760082--6760144 Score: 117
Period size: 3 Copynumber: 21.0 Consensus size: 3
6760072 AATAATAATA
*
6760082 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6760130 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
6760145 CATACTTTTA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:6760897 original size:50 final size:51
Alignment explanation
Indices: 6760843--6760964 Score: 126
Period size: 52 Copynumber: 2.4 Consensus size: 51
6760833 AGAAAGTGAA
*** *
6760843 GATAATTCCAAAATCTA-TTT-AT-AATGTTTAGGATTTTGTTGAAGAGTTGG
1 GATAATTCCAAAATC-AGTTTAATAAAT-TTTAGGATTTTGCCAAAAAGTTGG
*
6760893 GATAATTCTAAAATCAGTTTAATAAAATTTTAGGATTTTGCCAAAAAGTTGG
1 GATAATTCCAAAATCAGTTTAAT-AAATTTTAGGATTTTGCCAAAAAGTTGG
*
6760945 GATAA-TCCTAAAATTAGTTT
1 GATAATTCC-AAAATCAGTTT
6760965 TAACAAATGA
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
49 1 0.02
50 17 0.28
51 4 0.07
52 35 0.58
53 3 0.05
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.39
Consensus pattern (51 bp):
GATAATTCCAAAATCAGTTTAATAAATTTTAGGATTTTGCCAAAAAGTTGG
Found at i:6765133 original size:3 final size:3
Alignment explanation
Indices: 6765125--6765168 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
6765115 GAATTAAGAA
6765125 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
6765169 AATTTGAAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6766880 original size:19 final size:18
Alignment explanation
Indices: 6766856--6766898 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
6766846 ATAATTCTTT
6766856 TAAAAATAAATAAATAAAA
1 TAAAAATAAA-AAATAAAA
*
6766875 TGAAAAATAAAAACTAAAA
1 T-AAAAATAAAAAATAAAA
6766894 TAAAA
1 TAAAA
6766899 TATGGACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 9 0.41
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (18 bp):
TAAAAATAAAAAATAAAA
Found at i:6767548 original size:336 final size:335
Alignment explanation
Indices: 6766952--6767621 Score: 1085
Period size: 336 Copynumber: 2.0 Consensus size: 335
6766942 AAAAATAACT
* *
6766952 ATTTAAGGAAAATAAAATTTTATTGCAAGTAAAAAGGTTATTTAAATTTCACGAAAGTGTTAGGA
1 ATTTAAGGAAAATAAAATTTTATTGCAAGCAAAAAGGTTATTTAAATTTCACCAAAGTGTTAGGA
* * *
6767017 TAATTTAAAATATAATTTTTGCAAAAAAATGATATTTAAAAAAAGATAAATAAAATAAAAAAGAA
66 TAATTTAAAATATAATTTTTGCAAAAAAATAAAATTAAAAAAAAGATAAATAAAAT--AAAAGAA
* *
6767082 ATGATAAATTATTTAAATGAATCTTTTAAATATAATTTTAGAGAAAACTGAAAGAATTTGATTTT
129 ATGATAAATTATTTAAATGAATATTTTAAATATAATTTTAGAAAAAACTGAAAGAATTTGATTTT
* * *
6767147 CTTTAATTATTACAAGTAAAAATAATTTTTTGGATTTTACCATGGAGTTAGAATAATCCAAAATT
194 CTTTAATTATTACAAATAAAAATAATTTTTTGGATTTCACCATAGAGTTAGAATAATCCAAAATT
6767212 ATTTTTACTAGAATAAA-AGTTTATTTAAACAATATAAAAAATAATAATAAATAACAATAATTGA
259 ATTTTTACTAGAATAAAGA-TTTATTTAAACAATATAAAAAATAAT-A-AAATAACAATAATTGA
6767276 TATTTTGAATAAATA
321 TATTTTGAATAAATA
*
6767291 ATTTAAGGAAAATAAAATTTTATTGCAAGCAAAAAGGTTATTTAAATTTCACCAAAGTGTTGGGA
1 ATTTAAGGAAAATAAAATTTTATTGCAAGCAAAAAGGTTATTTAAATTTCACCAAAGTGTTAGGA
**
6767356 TAATTTAAAATATAATTTTTGTTAAAAAATAAAATTAAAAAAAAGGATAAATAAAAT-AAA-AAA
66 TAATTTAAAATATAATTTTTGCAAAAAAATAAAATTAAAAAAAA-GATAAATAAAATAAAAGAAA
* * *
6767419 TGATAAATTGTTTAAATGAATATTTTAAATATAATTTTATAAAAAACTGAAAGAATTTGGTTTTC
130 TGATAAATTATTTAAATGAATATTTTAAATATAATTTTAGAAAAAACTGAAAGAATTTGATTTTC
* * *
6767484 TTTAATTATTGCAAATAAAAATAATTTTTTGGATTTCACCATAGAGTTGGAATAATCTAAAATTA
195 TTTAATTATTACAAATAAAAATAATTTTTTGGATTTCACCATAGAGTTAGAATAATCCAAAATTA
*
6767549 TTTTTACTAGAATAAAGATTTATTTAAACAATATAAAAAATAATAAAATAATAATAATTGATATT
260 TTTTTACTAGAATAAAGATTTATTTAAACAATATAAAAAATAATAAAATAACAATAATTGATATT
6767614 TTGAATAA
325 TTGAATAA
6767622 GTATTTTTTA
Statistics
Matches: 309, Mismatches: 20, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
334 27 0.09
335 1 0.00
336 164 0.53
337 4 0.01
339 101 0.33
340 12 0.04
ACGTcount: A:0.49, C:0.04, G:0.10, T:0.37
Consensus pattern (335 bp):
ATTTAAGGAAAATAAAATTTTATTGCAAGCAAAAAGGTTATTTAAATTTCACCAAAGTGTTAGGA
TAATTTAAAATATAATTTTTGCAAAAAAATAAAATTAAAAAAAAGATAAATAAAATAAAAGAAAT
GATAAATTATTTAAATGAATATTTTAAATATAATTTTAGAAAAAACTGAAAGAATTTGATTTTCT
TTAATTATTACAAATAAAAATAATTTTTTGGATTTCACCATAGAGTTAGAATAATCCAAAATTAT
TTTTACTAGAATAAAGATTTATTTAAACAATATAAAAAATAATAAAATAACAATAATTGATATTT
TGAATAAATA
Found at i:6779088 original size:37 final size:38
Alignment explanation
Indices: 6779047--6779120 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
6779037 AATTCCTATG
*
6779047 AAAATACCAA-AAAAATAAAATAAAATGAA-TAAAAAGA
1 AAAATACCAACAAAAATAAAACAAAAT-AATTAAAAAGA
* *
6779084 AAAATAGCAACAAAAATAGAACAAAATAATTAAAAAG
1 AAAATACCAACAAAAATAAAACAAAATAATTAAAAAG
6779121 TAAACATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 11 0.34
38 21 0.66
ACGTcount: A:0.73, C:0.07, G:0.07, T:0.14
Consensus pattern (38 bp):
AAAATACCAACAAAAATAAAACAAAATAATTAAAAAGA
Found at i:6780281 original size:15 final size:15
Alignment explanation
Indices: 6780234--6780289 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
6780224 ATTCAATAAT
* *
6780234 AATAATAATAGCAAC
1 AATAACAATAACAAC
*
6780249 AACAACAATAACAAC
1 AATAACAATAACAAC
6780264 AATAACAATAACAAC
1 AATAACAATAACAAC
*
6780279 AATAATAATAA
1 AATAACAATAA
6780290 TATATACACA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.66, C:0.16, G:0.02, T:0.16
Consensus pattern (15 bp):
AATAACAATAACAAC
Found at i:6780702 original size:2 final size:2
Alignment explanation
Indices: 6780695--6780735 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
6780685 TCTATACCTA
6780695 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6780736 AAAGCATGGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6783571 original size:62 final size:63
Alignment explanation
Indices: 6783430--6783735 Score: 371
Period size: 60 Copynumber: 5.0 Consensus size: 63
6783420 GCTTTTATAT
*
6783430 AAGGAAAATTGATACTTTCAACTTTTCTTTAAAAATGTTTTTTCTTTTTGAAAATTTTATTTTC
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTT-TTTTTGAAAATTTTATTTTC
* * * * *
6783494 AAGAAAAATTGATACTTCCAACTTTTCCTAAAAAATGTTTTTTTTTTTTAAAGTTTTA-TTTC
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTTGAAAATTTTATTTTC
* *
6783556 AAGGAAAATTGATACTTTCAACTTATCCTTAAAAA-----TATTTTTTGAAAATTTTATTTTC
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTTGAAAATTTTATTTTC
* * * *
6783614 AAGGAAAATTGATACTTTCAGCTTTTCCTTAAAAAT-ATATTTTTTTT--AATTTTTATTTTC
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTTGAAAATTTTATTTTC
* * * * *
6783674 AAGAAAAATTGATACTTTCAACTGTTCCTCAAAAATG-CTTTTTTTTTGAAATTTTTAATTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTTGAAAATTTT-ATTTT
6783736 TATTCAAAGA
Statistics
Matches: 210, Mismatches: 23, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
57 15 0.07
58 37 0.18
60 52 0.25
62 49 0.23
63 18 0.09
64 39 0.19
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (63 bp):
AAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTTGAAAATTTTATTTTC
Found at i:6784442 original size:22 final size:22
Alignment explanation
Indices: 6784408--6784450 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6784398 TGTTTTAACT
6784408 TTCTACTTGCTGTGTTTCTTGAC
1 TTCTACTTGCTGTGTTT-TTGAC
*
6784431 TTCTA-TTTCTGTGTTTTTGA
1 TTCTACTTGCTGTGTTTTTGA
6784451 TTTTCCCCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 10 0.53
23 5 0.26
ACGTcount: A:0.09, C:0.16, G:0.16, T:0.58
Consensus pattern (22 bp):
TTCTACTTGCTGTGTTTTTGAC
Found at i:6785504 original size:44 final size:44
Alignment explanation
Indices: 6785413--6785499 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
6785403 TTCTTATTCG
* * *
6785413 AGTTCAAAAGTTCACATTCAAGAAATCTTAGAGTTTCACGTCCA
1 AGTTCAAAAGTTCACACTCAAGAAATCTTAGAGATTCACATCCA
* * *
6785457 AGTTCAAAGGTTCTCACTCAA-AAAT-TTAGAGATTCATATCCA
1 AGTTCAAAAGTTCACACTCAAGAAATCTTAGAGATTCACATCCA
6785499 A
1 A
6785500 AAGTTGAGTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
42 15 0.41
43 4 0.11
44 18 0.49
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.30
Consensus pattern (44 bp):
AGTTCAAAAGTTCACACTCAAGAAATCTTAGAGATTCACATCCA
Found at i:6785682 original size:58 final size:59
Alignment explanation
Indices: 6785552--6785694 Score: 153
Period size: 59 Copynumber: 2.4 Consensus size: 59
6785542 ATCGAAAAGT
* ** * *
6785552 TCAAAGCTTCTCATTCCAGTTCAAAGATTCACATCCCACGAACTTTAGGGTTTCACATC
1 TCAAAGATTCTCATTTAAGTTCAAAGATTCACATCCCACGAAATTTAGGGTTTCACACC
* * * * * * *
6785611 TCAAATATTCTCATTTAAGTTCGAAGATTCATATTCGAC-AAATTTTGGGTTTCTCACC
1 TCAAAGATTCTCATTTAAGTTCAAAGATTCACATCCCACGAAATTTAGGGTTTCACACC
*
6785669 TCAAAGATTCTCATTTGAAATTCAAA
1 TCAAAGATTCTCATTT-AAGTTCAAA
6785695 ACTCAAAGAT
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
58 30 0.44
59 38 0.56
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.35
Consensus pattern (59 bp):
TCAAAGATTCTCATTTAAGTTCAAAGATTCACATCCCACGAAATTTAGGGTTTCACACC
Found at i:6785736 original size:21 final size:21
Alignment explanation
Indices: 6785712--6785833 Score: 109
Period size: 21 Copynumber: 5.6 Consensus size: 21
6785702 GATTCTCATT
*
6785712 AATTCTCATTTGAAATTTAAA
1 AATTCTCATTTGAAATTCAAA
* *
6785733 AATTCTCATTTAAAACTCAAA
1 AATTCTCATTTGAAATTCAAA
* *
6785754 GATTCTTATTTGAAATTCAAA
1 AATTCTCATTTGAAATTCAAA
*
6785775 GATTCTCATTTGAAAACTTCTTAAA
1 AATTCTCATTTG-AAA-TTC--AAA
* * *
6785800 AATTCTCGTTTAAAACTCAAA
1 AATTCTCATTTGAAATTCAAA
**
6785821 GTTTCTCATTTGA
1 AATTCTCATTTGA
6785834 GGATTTCTTA
Statistics
Matches: 81, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
21 58 0.72
22 3 0.04
23 5 0.06
24 3 0.04
25 12 0.15
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.40
Consensus pattern (21 bp):
AATTCTCATTTGAAATTCAAA
Found at i:6785817 original size:67 final size:65
Alignment explanation
Indices: 6785713--6785927 Score: 197
Period size: 67 Copynumber: 3.2 Consensus size: 65
6785703 ATTCTCATTA
*
6785713 ATTCTCATTTGAAATTTAAAAATTCTCATTTAAAACTCAAAGATTCTTATTTGA-AATTC-AAAG
1 ATTCTCATTTGAAATTTAAAAATTCTCATTTAAAACTCAAAGATTCTCATTTGAGAATTCTAAAG
* * *
6785776 ATTCTCATTTGAAAACTTCTTAAAAATTCTCGTTTAAAACTCAAAGTTTCTCATTTGAGGATTTC
1 ATTCTCATTTG-AAA--T-TTAAAAATTCTCATTTAAAACTCAAAGATTCTCATTTGA-GAATTC
6785841 TTAAAG
61 -TAAAG
** * * * *
6785847 ATTCTCATTT-AAGGCTCAAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAG-A-CC
1 ATTCTCATTTGAA-ATTTAAAAATTCTCATTT-AAAAC-TC--AAAGATTCTCATTTGAGAATTC
6785909 TAAAG
61 TAAAG
*
6785914 ATTCACATTTGAAA
1 ATTCTCATTTGAAA
6785928 ACATCTTAAA
Statistics
Matches: 123, Mismatches: 15, Indels: 24
0.76 0.09 0.15
Matches are distributed among these distances:
63 11 0.09
64 3 0.02
66 1 0.01
67 63 0.51
68 8 0.07
69 8 0.07
70 1 0.01
71 28 0.23
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.38
Consensus pattern (65 bp):
ATTCTCATTTGAAATTTAAAAATTCTCATTTAAAACTCAAAGATTCTCATTTGAGAATTCTAAAG
Found at i:6785820 original size:46 final size:46
Alignment explanation
Indices: 6785734--6785941 Score: 239
Period size: 46 Copynumber: 4.6 Consensus size: 46
6785724 AAATTTAAAA
* *
6785734 ATTCTCATTT-AAAAC-TC--AAAGATTCTTATTTGAA-ATTCAAAG
1 ATTCTCATTTGAAAACTTCTTAAAGATTCTCATTT-AAGACTCAAAG
* * *
6785776 ATTCTCATTTGAAAACTTCTTAAAAATTCTCGTTTAAAACTCAAAG
1 ATTCTCATTTGAAAACTTCTTAAAGATTCTCATTTAAGACTCAAAG
* ** * *
6785822 TTTCTCATTTGAGGATTTCTTAAAGATTCTCATTTAAGGCTCAAAG
1 ATTCTCATTTGAAAACTTCTTAAAGATTCTCATTTAAGACTCAAAG
*
6785868 ATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAGAC-CTAAAG
1 ATTCTCATTTGAAAACTTCTTAAAGATTCTCATTTAAGACTC-AAAG
* *
6785914 ATTCACATTTGAAAACATCTTAAAGATT
1 ATTCTCATTTGAAAACTTCTTAAAGATT
6785942 GAGACTCAAA
Statistics
Matches: 140, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
42 10 0.07
43 5 0.04
44 2 0.01
45 3 0.02
46 120 0.86
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.38
Consensus pattern (46 bp):
ATTCTCATTTGAAAACTTCTTAAAGATTCTCATTTAAGACTCAAAG
Found at i:6785852 original size:25 final size:23
Alignment explanation
Indices: 6785713--6785925 Score: 81
Period size: 21 Copynumber: 9.5 Consensus size: 23
6785703 ATTCTCATTA
* *
6785713 ATTCTCATTTGA-AAT-TTAAAA
1 ATTCTCATTTGAGGATCTTAAAG
* * *
6785734 ATTCTCATTT-A-AAACTCAAAG
1 ATTCTCATTTGAGGATCTTAAAG
* * *
6785755 ATTCTTATTTGA-AAT-TCAAAG
1 ATTCTCATTTGAGGATCTTAAAG
** *
6785776 ATTCTCATTTGAAAACTTCTTAAAA
1 ATTCTCATTTGAGGA--TCTTAAAG
* * * *
6785801 ATTCTCGTTT-A-AAACTCAAAG
1 ATTCTCATTTGAGGATCTTAAAG
*
6785822 TTTCTCATTTGAGGATTTCTTAAAG
1 ATTCTCATTTGAGGA--TCTTAAAG
* *
6785847 ATTCTCATTTAAGG--CTCAAAG
1 ATTCTCATTTGAGGATCTTAAAG
**
6785868 ATTCTCATTTGAAAACGTCTTAAAG
1 ATTCTCATTTGAGGA--TCTTAAAG
* *
6785893 ATTCTCATTT-AAGA-CCTAAAG
1 ATTCTCATTTGAGGATCTTAAAG
*
6785914 ATTCACATTTGA
1 ATTCTCATTTGA
6785926 AAACATCTTA
Statistics
Matches: 150, Mismatches: 27, Indels: 29
0.73 0.13 0.14
Matches are distributed among these distances:
20 3 0.02
21 85 0.57
22 7 0.05
23 3 0.02
24 5 0.03
25 47 0.31
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.38
Consensus pattern (23 bp):
ATTCTCATTTGAGGATCTTAAAG
Found at i:6785869 original size:21 final size:21
Alignment explanation
Indices: 6785734--6785923 Score: 123
Period size: 21 Copynumber: 8.5 Consensus size: 21
6785724 AAATTTAAAA
*
6785734 ATTCTCATTTAAAACTCAAAG
1 ATTCTCATTTAAGACTCAAAG
* *
6785755 ATTCTTATTTGAA-ATTCAAAG
1 ATTCTCATTT-AAGACTCAAAG
* *
6785776 ATTCTCATTTGAAAACTTCTTAAAA
1 ATTCTCATTT-AAGAC-TC--AAAG
* *
6785801 ATTCTCGTTTAAAACTCAAAG
1 ATTCTCATTTAAGACTCAAAG
* * *
6785822 TTTCTCATTTGAGGATTTCTTAAAG
1 ATTCTCATTT-AAGA---CTCAAAG
*
6785847 ATTCTCATTTAAGGCTCAAAG
1 ATTCTCATTTAAGACTCAAAG
*
6785868 ATTCTCATTTGAAAACGTCTTAAAG
1 ATTCTCATTT-AAGAC-TC--AAAG
6785893 ATTCTCATTTAAGAC-CTAAAG
1 ATTCTCATTTAAGACTC-AAAG
*
6785914 ATTCACATTT
1 ATTCTCATTT
6785924 GAAAACATCT
Statistics
Matches: 136, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
21 69 0.51
22 9 0.07
23 6 0.04
24 11 0.08
25 41 0.30
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.38
Consensus pattern (21 bp):
ATTCTCATTTAAGACTCAAAG
Found at i:6787252 original size:11 final size:11
Alignment explanation
Indices: 6787232--6787322 Score: 55
Period size: 10 Copynumber: 8.0 Consensus size: 11
6787222 TTCTTTCATC
6787232 TTTCTCTTTTT
1 TTTCTCTTTTT
*
6787243 TGTCT-TTTTT
1 TTTCTCTTTTT
6787253 TTCTCTTTCCTTATTT
1 TT-TC--T-CTT-TTT
*
6787269 TTTCTC-TCTT
1 TTTCTCTTTTT
6787279 TTTCT-TTTTT
1 TTTCTCTTTTT
6787289 TTTCTCATCTTTT
1 TTTCTC-T-TTTT
6787302 TTTCT-TTTTT
1 TTTCTCTTTTT
* *
6787312 CTTATCTTTTT
1 TTTCTCTTTTT
6787323 CATCCTCATC
Statistics
Matches: 63, Mismatches: 6, Indels: 22
0.69 0.07 0.24
Matches are distributed among these distances:
10 28 0.44
11 13 0.21
12 2 0.03
13 11 0.17
15 4 0.06
16 5 0.08
ACGTcount: A:0.03, C:0.19, G:0.01, T:0.77
Consensus pattern (11 bp):
TTTCTCTTTTT
Found at i:6787257 original size:20 final size:19
Alignment explanation
Indices: 6787232--6787322 Score: 85
Period size: 20 Copynumber: 4.6 Consensus size: 19
6787222 TTCTTTCATC
6787232 TTTCTCTTTTTTGTCTTTTT
1 TTTCTCTTTTTT-TCTTTTT
** *
6787252 TTTCTCTTTCCTTATTTTT
1 TTTCTCTTTTTTTCTTTTT
*
6787271 TCTCTCTTTTTCTT-TTTTT
1 TTTCTCTTTTT-TTCTTTTT
6787290 TTCTCATCTTTTTTTCTTTTT
1 TT-TC-TCTTTTTTTCTTTTT
*
6787311 TCTTATCTTTTT
1 T-TTCTCTTTTT
6787323 CATCCTCATC
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
19 20 0.34
20 23 0.40
21 14 0.24
22 1 0.02
ACGTcount: A:0.03, C:0.19, G:0.01, T:0.77
Consensus pattern (19 bp):
TTTCTCTTTTTTTCTTTTT
Found at i:6787259 original size:26 final size:27
Alignment explanation
Indices: 6787225--6787283 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
6787215 TTTTCCATTC
*
6787225 TTTCATCTTTCTCTT-TTTTGTCT-TTTT
1 TTTC-TCTTTC-CTTATTTTGTCTCTCTT
*
6787252 TTTCTCTTTCCTTATTTTTTCTCTCTT
1 TTTCTCTTTCCTTATTTTGTCTCTCTT
6787279 TTTCT
1 TTTCT
6787284 TTTTTTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 3 0.11
26 13 0.46
27 12 0.43
ACGTcount: A:0.03, C:0.22, G:0.02, T:0.73
Consensus pattern (27 bp):
TTTCTCTTTCCTTATTTTGTCTCTCTT
Found at i:6787286 original size:17 final size:17
Alignment explanation
Indices: 6787232--6787288 Score: 60
Period size: 19 Copynumber: 3.2 Consensus size: 17
6787222 TTCTTTCATC
*
6787232 TTTCTCTTTTTTGTCTTT
1 TTTCTCTCTTTT-TCTTT
* *
6787250 TTTTTCTCTTTCCTTATTT
1 TTTCTCTCTTT--TTCTTT
6787269 TTTCTCTCTTTTTCTTT
1 TTTCTCTCTTTTTCTTT
6787286 TTT
1 TTT
6787289 TTTCTCATCT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
17 8 0.25
18 9 0.28
19 14 0.44
20 1 0.03
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTCTCTCTTTTTCTTT
Found at i:6787299 original size:15 final size:15
Alignment explanation
Indices: 6787281--6787350 Score: 52
Period size: 15 Copynumber: 4.3 Consensus size: 15
6787271 TCTCTCTTTT
6787281 TCTTTTTTTTTCTCA
1 TCTTTTTTTTTCTCA
**
6787296 TCTTTTTTTCTT-TTT
1 TCTTTTTTT-TTCTCA
6787311 TCTTATCTTTTTCATCCTCA
1 TCTT-T-TTTTT--T-CTCA
*
6787331 TCTTTTTTTTTTTCA
1 TCTTTTTTTTTCTCA
6787346 TCTTT
1 TCTTT
6787351 CACCTATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
15 22 0.51
16 5 0.12
17 4 0.09
18 6 0.14
19 1 0.02
20 5 0.12
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (15 bp):
TCTTTTTTTTTCTCA
Found at i:6787360 original size:22 final size:21
Alignment explanation
Indices: 6787318--6787362 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
6787308 TTTTCTTATC
* *
6787318 TTTTTCATCCTCATCTTTTTT
1 TTTTTCATCCTCACCTATTTT
*
6787339 TTTTTCATCTTTCACCTATTTT
1 TTTTTCATC-CTCACCTATTTT
6787361 TT
1 TT
6787363 ATATCTCTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.11, C:0.22, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTCATCCTCACCTATTTT
Found at i:6787733 original size:16 final size:17
Alignment explanation
Indices: 6787704--6787737 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
6787694 ATGTGTGGCA
*
6787704 TTTTTCTTTCTTTTTTC
1 TTTTACTTTCTTTTTTC
6787721 TTTTACTTT-TTTTTTC
1 TTTTACTTTCTTTTTTC
6787737 T
1 T
6787738 CTTTCCATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTACTTTCTTTTTTC
Found at i:6790204 original size:93 final size:95
Alignment explanation
Indices: 6790075--6790260 Score: 286
Period size: 93 Copynumber: 2.0 Consensus size: 95
6790065 TATGTTGATA
** *
6790075 CATAGATGAAATATGAAACTGATGCAGATGCACGATGTTAAATATGATAATGATGTATGCAAATG
1 CATAGATGAAATATGAAACTGATGCAGATAAACGATGTTAAATATGACAATGATGTATGCAAATG
*
6790140 GACAAAGTCAAACAAACAAAATAGTTAGAT
66 CACAAAGTCAAACAAACAAAATAGTTAGAT
* * **
6790170 CATAGATG-AA-ATGAAAGTGATGTAGATAAACGATGTTACTTATGACAATGATGTATGCAAATG
1 CATAGATGAAATATGAAACTGATGCAGATAAACGATGTTAAATATGACAATGATGTATGCAAATG
6790233 CACAAAGTCAAACAAACAAAATAGTTAG
66 CACAAAGTCAAACAAACAAAATAGTTAG
6790261 GTCACAAATT
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 73 0.88
94 2 0.02
95 8 0.10
ACGTcount: A:0.46, C:0.11, G:0.19, T:0.24
Consensus pattern (95 bp):
CATAGATGAAATATGAAACTGATGCAGATAAACGATGTTAAATATGACAATGATGTATGCAAATG
CACAAAGTCAAACAAACAAAATAGTTAGAT
Found at i:6791465 original size:59 final size:58
Alignment explanation
Indices: 6791274--6791481 Score: 238
Period size: 59 Copynumber: 3.5 Consensus size: 58
6791264 TAAAATAAGG
* * * ** *
6791274 AAAATTCATACTTTTAACTTTTTCTCAAAATGCTTTTTTGAAAATTTTATTTTCAAGA
1 AAAATTGATACTTTTAACTTTTCCTAAAAATTTTTTTTTAAAAATTTTATTTTCAAGA
** ** *
6791332 AAAATTGATACTTCCAACTTTTCCTAAAAAATCTTTTTTTTTTAAGTTTTATTTT-AAGA
1 AAAATTGATACTTTTAACTTTTCCT-AAAAAT-TTTTTTTTAAAAATTTTATTTTCAAGA
* *
6791391 AAAATTGATACTTTTAACTTTTCCTTACAAATTTTTTTTTAAAAATTTTATTTTCAAGG
1 AAAATTGATACTTTTAACTTTTCC-TAAAAATTTTTTTTTAAAAATTTTATTTTCAAGA
* *
6791450 AAAATTGATATTTTTAACTTTTTCTCAAAAAT
1 AAAATTGATACTTTTAACTTTTCCT-AAAAAT
6791482 ATATATTTTT
Statistics
Matches: 125, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
58 41 0.33
59 66 0.53
60 18 0.14
ACGTcount: A:0.35, C:0.11, G:0.05, T:0.49
Consensus pattern (58 bp):
AAAATTGATACTTTTAACTTTTCCTAAAAATTTTTTTTTAAAAATTTTATTTTCAAGA
Found at i:6791491 original size:118 final size:117
Alignment explanation
Indices: 6791269--6791492 Score: 295
Period size: 118 Copynumber: 1.9 Consensus size: 117
6791259 TGCTTTAAAA
* * *
6791269 TAAGGAAAATTCATACTTTTAACTTTTTCTCAAAATGCTTTTTTGAAAATTTTATTTTCAAGAAA
1 TAAGAAAAATTCATACTTTTAACTTTTCCTCAAAATGCTTTTTTAAAAATTTTATTTTCAAGAAA
* * *
6791334 AATTGATACTTCCAACTTTTCCTAAAAAATCTTTTTTTTTTAAGTTTTATTT
66 AATTGATACTTCCAACTTTTCCTAAAAAATATATATTTTTTAAGTTTTATTT
* * ** *
6791386 TAAGAAAAATTGATACTTTTAACTTTTCCTTACAAATTTTTTTTTAAAAATTTTATTTTCAAGGA
1 TAAGAAAAATTCATACTTTTAACTTTTCCTCA-AAATGCTTTTTTAAAAATTTTATTTTCAAGAA
* ** * *
6791451 AAATTGATATTTTTAACTTTTTCTCAAAAATATATATTTTTT
65 AAATTGATACTTCCAACTTTTCCTAAAAAATATATATTTTTT
6791493 GAAATATTTA
Statistics
Matches: 90, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
117 28 0.31
118 62 0.69
ACGTcount: A:0.35, C:0.10, G:0.05, T:0.50
Consensus pattern (117 bp):
TAAGAAAAATTCATACTTTTAACTTTTCCTCAAAATGCTTTTTTAAAAATTTTATTTTCAAGAAA
AATTGATACTTCCAACTTTTCCTAAAAAATATATATTTTTTAAGTTTTATTT
Found at i:6792514 original size:12 final size:11
Alignment explanation
Indices: 6792491--6792551 Score: 70
Period size: 12 Copynumber: 5.4 Consensus size: 11
6792481 CTATCACCCT
6792491 AAAATAATAATA
1 AAAATAA-AATA
*
6792503 GAAATCAAAATA
1 AAAAT-AAAATA
*
6792515 AAAACCAAAATA
1 AAAA-TAAAATA
6792527 AAAATAAAAT-
1 AAAATAAAATA
6792537 AAAATAAAATA
1 AAAATAAAATA
6792548 AAAA
1 AAAA
6792552 CAAATTTTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
10 10 0.24
11 9 0.21
12 21 0.50
13 2 0.05
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:6792529 original size:5 final size:5
Alignment explanation
Indices: 6792490--6792550 Score: 59
Period size: 6 Copynumber: 11.0 Consensus size: 5
6792480 CCTATCACCC
*
6792490 TAAAA TAATAA TAGAAA TCAAAA TAAAAA CCAAAA TAAAAA TAAAA TAAAA
1 TAAAA TAA-AA TA-AAA T-AAAA T-AAAA -TAAAA T-AAAA TAAAA TAAAA
6792541 TAAAA TAAAA
1 TAAAA TAAAA
6792551 ACAAATTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
5 22 0.46
6 24 0.50
7 2 0.04
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (5 bp):
TAAAA
Found at i:6795064 original size:17 final size:16
Alignment explanation
Indices: 6795031--6795063 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6795021 ATGATATATC
6795031 ATAATAAATTGTAAAA
1 ATAATAAATTGTAAAA
6795047 ATAATATAATT-TAAAA
1 ATAATA-AATTGTAAAA
6795063 A
1 A
6795064 AAGAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
ATAATAAATTGTAAAA
Found at i:6795644 original size:21 final size:20
Alignment explanation
Indices: 6795585--6795646 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 20
6795575 TACTTTTTAT
6795585 TTATAATAATAATTTTTACA
1 TTATAATAATAATTTTTACA
* *
6795605 TTACTAAT-TTAATTATTTACG
1 TTA-TAATAATAATT-TTTACA
6795626 TTATAATAATAAATTTTTACA
1 TTATAATAAT-AATTTTTACA
6795647 CATGTTCTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
20 12 0.35
21 18 0.53
22 4 0.12
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (20 bp):
TTATAATAATAATTTTTACA
Found at i:6796027 original size:67 final size:67
Alignment explanation
Indices: 6795919--6796047 Score: 161
Period size: 67 Copynumber: 1.9 Consensus size: 67
6795909 GTTAGGGTGT
* * *
6795919 TATGATAGTTCTAACTTATTTTACGTTAAACGATACTAATTTTACGATTATTCTCACATTTTAAT
1 TATGATACTTCTAACATATTTTACATTAAACGATACTAATTTTACGATTATTCTCACATTTTAAT
6795984 GC
66 GC
* ** * * *
6795986 TATGATACTTTTAACATATTTTACATTAAATTATA-TCAATTTTATGATTATTTTCATATTTT
1 TATGATACTTCTAACATATTTTACATTAAACGATACT-AATTTTACGATTATTCTCACATTTT
6796048 TCTGTTAACA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
66 1 0.02
67 51 0.98
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.50
Consensus pattern (67 bp):
TATGATACTTCTAACATATTTTACATTAAACGATACTAATTTTACGATTATTCTCACATTTTAAT
GC
Found at i:6796112 original size:21 final size:21
Alignment explanation
Indices: 6796062--6796149 Score: 78
Period size: 20 Copynumber: 4.4 Consensus size: 21
6796052 TTAACATTTA
* *
6796062 TTTTTAGGTT-TAA-AATTAT
1 TTTTTATGTTATAATAATAAT
6796081 TTTTTAT-TTATAATAATAAT
1 TTTTTATGTTATAATAATAAT
*
6796101 TTTTTATGTTATCAAT-TTAAT
1 TTTTTATGTTAT-AATAATAAT
* *
6796122 TATTTATGTTACAATAA-AAT
1 TTTTTATGTTATAATAATAAT
*
6796142 TTGTTATG
1 TTTTTATG
6796150 CTTTTTCTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
18 2 0.04
19 9 0.16
20 24 0.43
21 18 0.32
22 3 0.05
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
TTTTTATGTTATAATAATAAT
Found at i:6796297 original size:18 final size:20
Alignment explanation
Indices: 6796262--6796301 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
6796252 ATTTTTAGCC
*
6796262 TTTTACTTTAACACTTATTT
1 TTTTACTTTAACAATTATTT
6796282 TTTTA-TTTAA-AATTATTT
1 TTTTACTTTAACAATTATTT
6796300 TT
1 TT
6796302 ATTTATAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 5 0.26
20 5 0.26
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTACTTTAACAATTATTT
Found at i:6796487 original size:503 final size:502
Alignment explanation
Indices: 6795571--6796475 Score: 1051
Period size: 501 Copynumber: 1.8 Consensus size: 502
6795561 TTTTTATTTG
*
6795571 AAATTACTTTTTATTTATAATAATAATTTTTACATTACTAATTTAATTATTTACGTTATAATAAT
1 AAATTACTTTTTATTTATAATAATAATTTTTACATTACTAATTTAATTATTTACGTTACAATAAT
*
6795636 AAATTTTTACACATGTTCTTATCTTTTATTACATTTAAAATTATCACAACTTTTTTCTTAAGTTC
66 AAATTTTTACACATGTTCTTATCTTTTATTACATTTAAAATTATCACAACTTTTTTCTTAAGTTA
* * * * *
6795701 TTATGACACTTTTAATACACTTTATACCAAATGATACAAATTTTATGATTATTCTTATATTTTTA
131 TTATGACACTTTGAACACACTTTATACCAAATGATACAAATTTTATAATTATTCTTAGACTTTTA
* * * *
6795766 CATAAACACTTATTTTTTGATTGAATTATTTTTATTTATAATAATAATTCTTTTATATTGTCAAC
196 CATAAACACTTATTTTTTGATTAAATTATTTTTATTTATAATAATAATTCTTTTACATTGACAAA
* ** * *
6795831 TTAATTATTTATGTTAACATAATTTATTTTTACGTTTATTCTTGTATTACATTACGTTTAGAATT
261 TTAATTA-TCATGTTAACATAAGATATTTTTACATTTATTCTTGTATTACATTACGTTTAAAATT
* * * * * * * *
6795896 ATCATAATTCTTTGTTAGGGTGTTATGATAGTTCTAACTTATTTTACGTTAAACGATACTAATTT
325 ATAATAATTCTTTGTTAGAGTGTAACGATACTTCTAACTTATTTTACATAAAACAATACTAATTT
*
6795961 TACGATTATTCTCACATTTTAATGCTATGATACTTTTAACATATTTTACATTAAATTATATCAAT
390 TACAATTATTCTCACATTTTAATGCTATGATACTTTTAACATATTTTACATTAAATTATATCAAT
6796026 TTTATGATTATTTTCATATTTTTCTGTTAACATTTATTTTTAGGTTTA
455 TTTATGATTATTTTCATATTTTTCTGTTAACATTTATTTTTAGGTTTA
* ** *
6796074 AAATTATTTTTTATTTATAATAATAATTTTTTATGTTA-TCAATTTAATTATTTATGTTACAAT-
1 AAATTACTTTTTATTTATAATAATAA-TTTTTACATTACT-AATTTAATTATTTACGTTACAATA
** * * * * * *
6796137 A-AAATTTGTTATGCTTTTTCTTATGTTTTATTATATTTAGAATTATCATAA-TTTTTTCTTAAG
64 ATAAATTT-TTACACATGTTCTTATCTTTTATTACATTTAAAATTATCACAACTTTTTTCTTAAG
* * * * * * *
6796200 -TATTATGATACTTTGAACATATTTTATGCCAAAAT-ATACCAATTTTATAATTATTTTTAGCCT
128 TTATTATGACACTTTGAACACACTTTATACC-AAATGATACAAATTTTATAATTATTCTTAGACT
* * * ** *
6796263 TTTACTTTAACACTTATTTTTTTATTTAAAATTATTTTTATTTATAATGCTAATTTTTTTACATT
192 TTTACATAAACACTTATTTTTTGA-TT-AAATTATTTTTATTTATAATAATAATTCTTTTACATT
* * * * * * **
6796328 -ACAAATTTATTA-CAT-TTCA-ATAAGATCTTTTTGCATTTGTTGTTAGT-TTTTATTACGTTT
255 GACAAATTAATTATCATGTTAACATAAGATATTTTTACATTTATTCTT-GTATTACATTACGTTT
* * *
6796388 AAAATTATTAAAATATTTTTTTTGTTAGAGTGTAACGATACTTCTAA-TTATTTTACATAAAATA
319 AAAATTA-T--AATA-ATTCTTTGTTAGAGTGTAACGATACTTCTAACTTATTTTACATAAAACA
* *
6796452 ATATTAATTTTATAATTATTCTCA
380 ATACTAATTTTACAATTATTCTCA
6796476 TTATTTTTAA
Statistics
Matches: 328, Mismatches: 63, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
498 35 0.11
499 6 0.02
500 2 0.01
501 103 0.31
502 58 0.18
503 94 0.29
504 30 0.09
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.52
Consensus pattern (502 bp):
AAATTACTTTTTATTTATAATAATAATTTTTACATTACTAATTTAATTATTTACGTTACAATAAT
AAATTTTTACACATGTTCTTATCTTTTATTACATTTAAAATTATCACAACTTTTTTCTTAAGTTA
TTATGACACTTTGAACACACTTTATACCAAATGATACAAATTTTATAATTATTCTTAGACTTTTA
CATAAACACTTATTTTTTGATTAAATTATTTTTATTTATAATAATAATTCTTTTACATTGACAAA
TTAATTATCATGTTAACATAAGATATTTTTACATTTATTCTTGTATTACATTACGTTTAAAATTA
TAATAATTCTTTGTTAGAGTGTAACGATACTTCTAACTTATTTTACATAAAACAATACTAATTTT
ACAATTATTCTCACATTTTAATGCTATGATACTTTTAACATATTTTACATTAAATTATATCAATT
TTATGATTATTTTCATATTTTTCTGTTAACATTTATTTTTAGGTTTA
Found at i:6797418 original size:21 final size:20
Alignment explanation
Indices: 6797402--6797441 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
6797392 TAATAATTTG
*
6797402 TATTTATTAAAATATAAATAT
1 TATTTATCAAAATAT-AATAT
*
6797423 TATTTATCAATATATAATA
1 TATTTATCAAAATATAATA
6797442 ATTAATCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTTATCAAAATATAATAT
Found at i:6798289 original size:20 final size:23
Alignment explanation
Indices: 6798261--6798301 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
6798251 TACTATTGCT
6798261 TTTTAATAATT-TTTA-TTATAA
1 TTTTAATAATTGTTTACTTATAA
6798282 TTTT-ATAATTGTTTACTTAT
1 TTTTAATAATTGTTTACTTAT
6798302 CATAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (23 bp):
TTTTAATAATTGTTTACTTATAA
Found at i:6798665 original size:28 final size:26
Alignment explanation
Indices: 6798632--6798696 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 26
6798622 AAACAATTTT
*
6798632 AATATTAATTAATAACA-TTTATAATTCA
1 AATATTAATTAA-AA-ATTTTAAAATT-A
6798660 AATATTATATTAAAAATTTTAAAATTA
1 AATATTA-ATTAAAAATTTTAAAATTA
6798687 AATTATTAAT
1 AA-TATTAAT
6798697 ATTAAATATT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
27 6 0.18
28 22 0.67
29 5 0.15
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (26 bp):
AATATTAATTAAAAATTTTAAAATTA
Found at i:6801068 original size:20 final size:19
Alignment explanation
Indices: 6801045--6801087 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
6801035 ACCAAACAAC
*
6801045 AAAAAAATTCAGATTTTTCA
1 AAAAAAAATC-GATTTTTCA
*
6801065 AAAAAAAATCTATTTTTCA
1 AAAAAAAATCGATTTTTCA
6801084 AAAA
1 AAAA
6801088 GATATTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAAAAAATCGATTTTTCA
Found at i:6801905 original size:3 final size:3
Alignment explanation
Indices: 6801897--6801943 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
6801887 TAAACATCAT
*
6801897 TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6801944 TAATTTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:6803431 original size:205 final size:204
Alignment explanation
Indices: 6803060--6803446 Score: 473
Period size: 208 Copynumber: 1.9 Consensus size: 204
6803050 AATAATAAGA
* * *
6803060 AAAAGGAAATTTTATCCAATGATGAGATTTAAAGGTATTTCGAGTAGTGATGCCTATAAAATCTC
1 AAAAGGAAATTTTATCCAATGATGAGATTTAAAAGTATTTCGAGTAGAGATGCCTATAAAATCCC
* * ** **
6803125 TAGGTGAGAAGAATTTTTTAAATATTACCAGTGTATTGGAGTATTTATAAAAATTTTTCAATGTA
66 TAGGTGAGAAGAATTTTTTAAATATTACCAGTGTATTGAAATATTTATAAAAATACTTCAATACA
* * *
6803190 ATAAAAATGTTCTTTTTGTTAGTAATAAATAAAAATTGATAAATATAATAAAAATATAAGTAATG
131 ATAAAAA-GTTCATTTTGTTAGTAATAAATAAAAATT-AAAAAAATAATAAAAATATAAGTAATG
6803255 AAAATTAGAAG
194 AAAATTAGAAG
*
6803266 AAAA-GAAATTTTATCCAATGATGAGATTTTAAAAGTA-TTCAGAGTAGAGATG-CTTTAAGAAA
1 AAAAGGAAATTTTATCCAATGATGAGA-TTTAAAAGTATTTC-GAGTAGAGATGCCTAT-A-AAA
* *
6803328 TCCCTAGGTGATAAGATTTTTTTTAAATATTACCAGTGTATTGAAATATTTATAGAAAA-ACTTC
62 TCCCTAGGTGAGAAGA-ATTTTTTAAATATTACCAGTGTATTGAAATATTTATA-AAAATACTTC
* ** *
6803392 AATACAATGAAAA-TTCATTTT-TTCTTCAA-AATTAAAAATTAAAAAAATAATAAAA
125 AATACAATAAAAAGTTCATTTTGTTAGT-AATAAATAAAAATTAAAAAAATAATAAAA
6803447 CAATTAATAA
Statistics
Matches: 155, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
204 13 0.08
205 41 0.26
206 33 0.21
207 17 0.11
208 47 0.30
209 4 0.03
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (204 bp):
AAAAGGAAATTTTATCCAATGATGAGATTTAAAAGTATTTCGAGTAGAGATGCCTATAAAATCCC
TAGGTGAGAAGAATTTTTTAAATATTACCAGTGTATTGAAATATTTATAAAAATACTTCAATACA
ATAAAAAGTTCATTTTGTTAGTAATAAATAAAAATTAAAAAAATAATAAAAATATAAGTAATGAA
AATTAGAAG
Found at i:6810710 original size:3 final size:3
Alignment explanation
Indices: 6810702--6810755 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
6810692 TTAAAAAAGC
6810702 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6810750 TAA TAA
1 TAA TAA
6810756 ATTTTAAAGG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6816848 original size:20 final size:21
Alignment explanation
Indices: 6816807--6816848 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
6816797 AAACAAACAT
* *
6816807 ATAAATAAAATACTAAATAAA
1 ATAAATAAAATACCAAAAAAA
6816828 ATAAA-AAAATACCAAAAAAA
1 ATAAATAAAATACCAAAAAAA
6816848 A
1 A
6816849 AGAAACGGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (21 bp):
ATAAATAAAATACCAAAAAAA
Found at i:6817219 original size:40 final size:40
Alignment explanation
Indices: 6817191--6817310 Score: 168
Period size: 40 Copynumber: 3.0 Consensus size: 40
6817181 TAGAGGCTTC
* *
6817191 ACAACTTTGAAAAATAAAGGCTTCTCTAATCAGAGGCACA
1 ACAACTTTGAAAAATAAAGGCTCCTCTAAACAGAGGCACA
* * * *
6817231 ATAACTTTGGAAAATAAAGGCTCCTTTAAGCAGAGGCACA
1 ACAACTTTGAAAAATAAAGGCTCCTCTAAACAGAGGCACA
* *
6817271 ACAATTTTGAAAAATAAAGGCTCCTTTAAACAGAGGCACA
1 ACAACTTTGAAAAATAAAGGCTCCTCTAAACAGAGGCACA
6817311 TTTAAGTAGA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (40 bp):
ACAACTTTGAAAAATAAAGGCTCCTCTAAACAGAGGCACA
Found at i:6817323 original size:56 final size:56
Alignment explanation
Indices: 6817246--6817366 Score: 179
Period size: 56 Copynumber: 2.2 Consensus size: 56
6817236 TTTGGAAAAT
* * * *
6817246 AAAGGCTCCTTTAAGCAGAGGCACAACAATTTTGAAAAATAAAGGCTCCTTTAAAC
1 AAAGGCACATTTAAGCAGAGGCACAACAACTTTGAAAAATAAAGGCTCCTCTAAAC
* * *
6817302 AGAGGCACATTTAAGTAGAGGCACAACCACTTTGAAAAATAAAGGCTCCTCTAAAC
1 AAAGGCACATTTAAGCAGAGGCACAACAACTTTGAAAAATAAAGGCTCCTCTAAAC
6817358 AAAGGCACA
1 AAAGGCACA
6817367 ACAACTTTAG
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (56 bp):
AAAGGCACATTTAAGCAGAGGCACAACAACTTTGAAAAATAAAGGCTCCTCTAAAC
Found at i:6817381 original size:40 final size:41
Alignment explanation
Indices: 6817320--6817400 Score: 112
Period size: 40 Copynumber: 2.0 Consensus size: 41
6817310 ATTTAAGTAG
* **
6817320 AGGCACAACCACTTTGAAAAATAAAGGCTCCT-CTAAACAA
1 AGGCACAACAACTTTGAAAAATAAAAACTCCTCCTAAACAA
6817360 AGGCACAACAACTTT-AGAAAATAAAAACTCCTCCTAAACAA
1 AGGCACAACAACTTTGA-AAAATAAAAACTCCTCCTAAACAA
6817401 TCATATTCAG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
39 1 0.03
40 27 0.75
41 8 0.22
ACGTcount: A:0.48, C:0.25, G:0.10, T:0.17
Consensus pattern (41 bp):
AGGCACAACAACTTTGAAAAATAAAAACTCCTCCTAAACAA
Found at i:6819264 original size:20 final size:21
Alignment explanation
Indices: 6819232--6819297 Score: 116
Period size: 21 Copynumber: 3.2 Consensus size: 21
6819222 CCCAAAATTA
6819232 ATAAAATATAATTTTTTAAAT
1 ATAAAATATAATTTTTTAAAT
6819253 ATAAAA-ATAATTTTTTAAAT
1 ATAAAATATAATTTTTTAAAT
*
6819273 ATAAAATATTATTTTTTAAAT
1 ATAAAATATAATTTTTTAAAT
6819294 ATAA
1 ATAA
6819298 TATTTAAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
20 20 0.47
21 23 0.53
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATAAAATATAATTTTTTAAAT
Found at i:6822566 original size:18 final size:18
Alignment explanation
Indices: 6822540--6822575 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
6822530 GGACATAAGC
*
6822540 TATTGAGATGTACAATTA
1 TATTAAGATGTACAATTA
6822558 TATTAAGATGTACAATTA
1 TATTAAGATGTACAATTA
6822576 CATTGAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.14, T:0.39
Consensus pattern (18 bp):
TATTAAGATGTACAATTA
Found at i:6830114 original size:21 final size:21
Alignment explanation
Indices: 6830082--6830123 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6830072 AAACAAACAC
*
6830082 ATAAATAAAATACTAAATAAAA
1 ATAAATAAAATACCAAA-AAAA
6830104 ATAAA-AAAATACCAAAAAAA
1 ATAAATAAAATACCAAAAAAA
6830124 TAGAAATGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (21 bp):
ATAAATAAAATACCAAAAAAA
Found at i:6833024 original size:8 final size:8
Alignment explanation
Indices: 6833008--6833121 Score: 90
Period size: 8 Copynumber: 13.6 Consensus size: 8
6832998 TTAATAATGG
6833008 ATGAAAAA
1 ATGAAAAA
6833016 ATGAGAAAA
1 ATGA-AAAA
**
6833025 GGGAAAAA
1 ATGAAAAA
6833033 ATGAAAAAAA
1 ATG--AAAAA
*
6833043 GAAGAAAAA
1 -ATGAAAAA
6833052 ATGAAAAA
1 ATGAAAAA
6833060 AT-AAAAA
1 ATGAAAAA
6833067 ATGAAAAAA
1 ATG-AAAAA
6833076 AT-AAAAA
1 ATGAAAAA
*
6833083 ATGACAAA
1 ATGAAAAA
6833091 ATGAAAAGA
1 ATGAAAA-A
6833100 ATGTAAAAGA
1 ATG-AAAA-A
*
6833110 A-GAGAAA
1 ATGAAAAA
6833117 ATGAA
1 ATGAA
6833122 GACTCAAATT
Statistics
Matches: 86, Mismatches: 10, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
7 16 0.19
8 33 0.38
9 23 0.27
10 12 0.14
11 2 0.02
ACGTcount: A:0.72, C:0.01, G:0.17, T:0.11
Consensus pattern (8 bp):
ATGAAAAA
Found at i:6833040 original size:26 final size:24
Alignment explanation
Indices: 6833011--6833094 Score: 71
Period size: 23 Copynumber: 3.4 Consensus size: 24
6833001 ATAATGGATG
*
6833011 AAAAAATGAGAAAAGGGAAAAAAT
1 AAAAAATGAGAAAAAGGAAAAAAT
* *
6833035 GAAAAAAAGAAGAAAAAATGAAAAAAT
1 -AAAAAATG-AG-AAAAAGGAAAAAAT
**
6833062 AAAAAATGA-AAAAAATAAAAAAT
1 AAAAAATGAGAAAAAGGAAAAAAT
*
6833085 GACAAAATGA
1 -AAAAAATGA
6833095 AAAGAATGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
23 12 0.24
24 8 0.16
25 8 0.16
26 9 0.18
27 12 0.24
ACGTcount: A:0.75, C:0.01, G:0.14, T:0.10
Consensus pattern (24 bp):
AAAAAATGAGAAAAAGGAAAAAAT
Found at i:6833049 original size:19 final size:18
Alignment explanation
Indices: 6833010--6833117 Score: 77
Period size: 17 Copynumber: 6.3 Consensus size: 18
6833000 AATAATGGAT
* *
6833010 GAAAAAATG-AGAAAAGG
1 GAAAAAATGAAAAAAAGA
6833027 GAAAAAATGAAAAAAAGAA
1 GAAAAAATGAAAAAAAG-A
6833046 GAAAAAATG--AAAAA-A
1 GAAAAAATGAAAAAAAGA
*
6833061 TAAAAAATG-AAAAAA-A
1 GAAAAAATGAAAAAAAGA
* * *
6833077 TAAAAAATGACAAAATGA
1 GAAAAAATGAAAAAAAGA
* *
6833095 -AAAGAATGTAAAAGAAGA
1 GAAAAAATG-AAAAAAAGA
6833113 GAAAA
1 GAAAA
6833118 TGAAGACTCA
Statistics
Matches: 74, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
15 9 0.12
16 15 0.20
17 25 0.34
18 13 0.18
19 12 0.16
ACGTcount: A:0.73, C:0.01, G:0.17, T:0.09
Consensus pattern (18 bp):
GAAAAAATGAAAAAAAGA
Found at i:6837188 original size:43 final size:43
Alignment explanation
Indices: 6837094--6837347 Score: 217
Period size: 43 Copynumber: 5.9 Consensus size: 43
6837084 CATGATTGTT
**
6837094 GAGAAGCCTTATTTATTTTTTGAAGTCATTGAGCCTCTGCTTA
1 GAGAAGCCTTATTTATTTTTCAAAGTCATTGAGCCTCTGCTTA
* * * * * * * *
6837137 AAGGAGCTTTATTTATTTTTCAAAGTTATTAAACCTTTGTTTA
1 GAGAAGCCTTATTTATTTTTCAAAGTCATTGAGCCTCTGCTTA
* *
6837180 GAGAAG-CTTATTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
1 GAGAAGCCTTATTTATTTTTCAAAGTCATTGAGCCTCTGCTTA
* * *
6837222 GA-ATAGCCTTATTTATTTTTTAGAAGTTATTGAGCCTCTACTTA
1 GAGA-AGCCTTATTTATTTTTCA-AAGTCATTGAGCCTCTGCTTA
* * ** * *
6837266 GAGGAGCTTTATTTA-TTTTCAAAAGTGGTTGAGCCTTTACTTA
1 GAGAAGCCTTATTTATTTTTC-AAAGTCATTGAGCCTCTGCTTA
* * * * *
6837309 GAGAAACTTTATTTGTTTCTTAAAAGTCATAGAGCCTCT
1 GAGAAGCCTTATTTATTT-TTCAAAGTCATTGAGCCTCT
6837348 TTTTAGATGA
Statistics
Matches: 167, Mismatches: 37, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
41 1 0.01
42 34 0.20
43 85 0.51
44 45 0.27
45 2 0.01
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (43 bp):
GAGAAGCCTTATTTATTTTTCAAAGTCATTGAGCCTCTGCTTA
Found at i:6837321 original size:87 final size:85
Alignment explanation
Indices: 6837094--6837347 Score: 217
Period size: 87 Copynumber: 2.9 Consensus size: 85
6837084 CATGATTGTT
** * * * * *
6837094 GAGAAGCCTTATTTATTTTTTGAAGTCATTGAGCCTCTGCTTA-AAGGAGCTTTATTTATTTTTC
1 GAGAAG-CTTATTTATTTTTCAAAGTCGTTGAGCCTCTACTTAGAA-TAACTTTATTTATTTTTT
* * * **
6837158 AAAGTTATTAAACCTTTGTTTA
64 AAAGTTATTGAGCCTCTACTTA
** * *
6837180 GAGAAGCTTATTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAATAGCCTTATTTATTTTTTAG
1 GAGAAGCTTATTTATTTTTCAAAGTCGTTGAGCCTCTACTTAGAATAACTTTATTTATTTTTTA-
6837245 AAGTTATTGAGCCTCTACTTA
65 AAGTTATTGAGCCTCTACTTA
* * * *
6837266 GAGGAGCTTTATTTA-TTTTCAAAAGTGGTTGAGCCTTTACTTAGAGA-AACTTTATTTGTTTCT
1 GAGAAGC-TTATTTATTTTTC-AAAGTCGTTGAGCCTCTACTTAGA-ATAACTTTATTTATTT-T
* * *
6837329 TAAAAGTCATAGAGCCTCT
62 TTAAAGTTATTGAGCCTCT
6837348 TTTTAGATGA
Statistics
Matches: 139, Mismatches: 23, Indels: 11
0.80 0.13 0.06
Matches are distributed among these distances:
85 48 0.35
86 35 0.25
87 52 0.37
88 4 0.03
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (85 bp):
GAGAAGCTTATTTATTTTTCAAAGTCGTTGAGCCTCTACTTAGAATAACTTTATTTATTTTTTAA
AGTTATTGAGCCTCTACTTA
Found at i:6837376 original size:129 final size:128
Alignment explanation
Indices: 6837101--6837378 Score: 287
Period size: 129 Copynumber: 2.2 Consensus size: 128
6837091 GTTGAGAAGC
** * *
6837101 CTTATTTATTTT-TTGAAGTCATTGAGCCTCTGCTTAAAGGAGCTTTATTTATTTTTCAAAGTTA
1 CTTATTTATTTTCAAGAAGTCATTGAGCCTCTACTTAAAGGAGCTTTATTTATTTTTCAAAGTGA
** * * * *
6837165 TTAAACCTTTGTTTAGAGAAGCTTATTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAATAG
66 TTAAACCTTTACTTAGAGAAACTTATTTATTTTTAAAAGTCATAGAGCCTCTGTTTAGAATAG
** * *
6837228 CCTTATTTATTTTTTAGAAGTTATTGAGCCTCTACTTAGAGGAGCTTTATTTA-TTTTCAAAAGT
1 -CTTATTTATTTTCAAGAAGTCATTGAGCCTCTACTTAAAGGAGCTTTATTTATTTTTC-AAAGT
* * * * *
6837292 GGTTGAGCCTTTACTTAGAGAAACTTTATTTGTTTCTTAAAAGTCATAGAGCCTCTTTTTAG-AT
64 GATTAAACCTTTACTTAGAGAAAC-TTATTTATTT-TTAAAAGTCATAGAGCCTCTGTTTAGAAT
6837356 GAG
127 -AG
*
6837359 -TT-TTTGTTATTCAAGAAGTC
1 CTTATTTATT-TTCAAGAAGTC
6837379 TGAGTATGTT
Statistics
Matches: 124, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
128 22 0.18
129 67 0.54
130 11 0.09
131 24 0.19
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (128 bp):
CTTATTTATTTTCAAGAAGTCATTGAGCCTCTACTTAAAGGAGCTTTATTTATTTTTCAAAGTGA
TTAAACCTTTACTTAGAGAAACTTATTTATTTTTAAAAGTCATAGAGCCTCTGTTTAGAATAG
Found at i:6838837 original size:59 final size:58
Alignment explanation
Indices: 6838766--6838881 Score: 180
Period size: 59 Copynumber: 2.0 Consensus size: 58
6838756 TAAAGAGATG
* *
6838766 TTTTAAAGAAAAGTTGAAAGTATCAAATTTTCTTGAAAATTAAAATTTTAAAAAATACT
1 TTTTAAAGAAAAGTTAAAAGTATCAAATTTACTTGAAAA-TAAAATTTTAAAAAATACT
*
6838825 TTTTGAAA-AAAAGTTAAAAGTATCAAATTTACTTGAAAATAAAATTTTCAAAAATAC
1 TTTT-AAAGAAAAGTTAAAAGTATCAAATTTACTTGAAAATAAAATTTTAAAAAATAC
6838882 ACAAGCGCCA
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
58 17 0.32
59 33 0.62
60 3 0.06
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (58 bp):
TTTTAAAGAAAAGTTAAAAGTATCAAATTTACTTGAAAATAAAATTTTAAAAAATACT
Found at i:6840985 original size:14 final size:14
Alignment explanation
Indices: 6840952--6840990 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
6840942 AAAATATGGG
*
6840952 TAAAAATAAATAAA
1 TAAAAATAAAAAAA
*
6840966 TCAAAATAAAAAAA
1 TAAAAATAAAAAAA
*
6840980 TAAAAAGAAAA
1 TAAAAATAAAA
6840991 TGGAAAAAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (14 bp):
TAAAAATAAAAAAA
Found at i:6841491 original size:21 final size:20
Alignment explanation
Indices: 6841476--6841522 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
6841466 CAAATCCACC
6841476 TTCAGAAACCAAAAATCACA
1 TTCAGAAACCAAAAATCACA
* * *
6841496 TTTAGAACCCTAAAATCACA
1 TTCAGAAACCAAAAATCACA
6841516 TTCAGAA
1 TTCAGAA
6841523 CTACAAATTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.49, C:0.23, G:0.06, T:0.21
Consensus pattern (20 bp):
TTCAGAAACCAAAAATCACA
Found at i:6844854 original size:18 final size:16
Alignment explanation
Indices: 6844822--6844863 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
6844812 TCTAATAATC
6844822 AAATAA-AAAAATTAA
1 AAATAACAAAAATTAA
6844837 AAATAACAAAAATGTTAA
1 AAATAACAAAAA--TTAA
*
6844855 AAAAAACAA
1 AAATAACAA
6844864 TATATGGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 6 0.26
16 5 0.22
18 12 0.52
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (16 bp):
AAATAACAAAAATTAA
Found at i:6849897 original size:59 final size:58
Alignment explanation
Indices: 6849808--6849931 Score: 178
Period size: 59 Copynumber: 2.1 Consensus size: 58
6849798 AAAAAAAACC
* *
6849808 TTTTTTAAAAAAATTATTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCATAAATA
1 TTTTTTAAAAAAATTATTTCCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATA
* *
6849866 TTTTTTAGAAAAACA-TATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATA
1 TTTTTTA-AAAAA-ATTATTTCCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATA
6849925 TATTTTT
1 T-TTTTT
6849932 TTGGAATTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
58 7 0.12
59 46 0.78
60 6 0.10
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.44
Consensus pattern (58 bp):
TTTTTTAAAAAAATTATTTCCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATA
Found at i:6850864 original size:6 final size:6
Alignment explanation
Indices: 6850855--6850886 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
6850845 GAAGAAAAGA
*
6850855 AAAAAT AAAAAT AAAAGT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA
6850887 TATAATAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:6850870 original size:18 final size:18
Alignment explanation
Indices: 6850849--6850886 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
6850839 GAATAAGAAG
6850849 AAAAGAAAAAATAAAAAT
1 AAAAGAAAAAATAAAAAT
*
6850867 AAAAGTAAAAATAAAAAT
1 AAAAGAAAAAATAAAAAT
6850885 AA
1 AA
6850887 TATAATAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (18 bp):
AAAAGAAAAAATAAAAAT
Found at i:6850898 original size:18 final size:18
Alignment explanation
Indices: 6850855--6850907 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
6850845 GAAGAAAAGA
*
6850855 AAAAATAAAAATAAAAGT
1 AAAAATAAAAATAATAGT
6850873 AAAAATAAAAATAATA-T
1 AAAAATAAAAATAATAGT
*
6850890 AATAGATAAATAATAATA
1 AA-AAATAAA-AATAATA
6850908 ATAGACAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
17 3 0.10
18 21 0.68
19 7 0.23
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.23
Consensus pattern (18 bp):
AAAAATAAAAATAATAGT
Found at i:6850902 original size:16 final size:17
Alignment explanation
Indices: 6850881--6850918 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
6850871 GTAAAAATAA
*
6850881 AAATAAT-ATAATAGAT
1 AAATAATAATAATAGAC
6850897 AAATAATAATAATAGAC
1 AAATAATAATAATAGAC
6850914 AAATA
1 AAATA
6850919 GTAAGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (17 bp):
AAATAATAATAATAGAC
Found at i:6850991 original size:24 final size:23
Alignment explanation
Indices: 6850950--6850997 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
6850940 AATATATATA
6850950 ATATATGTTAATAGATAAATGAAT
1 ATATATGTTAATAGATAAAT-AAT
*
6850974 ATATATGTATATTA-ATAAATAAT
1 ATATATGT-TAATAGATAAATAAT
6850997 A
1 A
6850998 ATAGTAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 4 0.18
24 14 0.64
25 4 0.18
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (23 bp):
ATATATGTTAATAGATAAATAAT
Found at i:6851044 original size:12 final size:12
Alignment explanation
Indices: 6850990--6851052 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
6850980 GTATATTAAT
*
6850990 AAATAATAATAG
1 AAATAATAATAA
*
6851002 TAATAAATAATAA
1 AAAT-AATAATAA
* *
6851015 AAAT-TTAGA-GA
1 AAATAATA-ATAA
6851026 AAA-AATAATAA
1 AAATAATAATAA
6851037 AAATAATAATAA
1 AAATAATAATAA
6851049 AAAT
1 AAAT
6851053 GGGCCTACCC
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
10 1 0.03
11 12 0.31
12 16 0.41
13 10 0.26
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (12 bp):
AAATAATAATAA
Found at i:6851050 original size:22 final size:22
Alignment explanation
Indices: 6850986--6851051 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
6850976 ATATGTATAT
* *
6850986 TAATAAATAATAATAGTAATAAA
1 TAATAAA-AATAATAATAAAAAA
* *
6851009 TAATAAAAAT-TTAGAGAAAAAA
1 TAATAAAAATAATA-ATAAAAAA
6851031 TAATAAAAATAATAATAAAAA
1 TAATAAAAATAATAATAAAAA
6851052 TGGGCCTACC
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
21 2 0.06
22 24 0.69
23 9 0.26
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (22 bp):
TAATAAAAATAATAATAAAAAA
Found at i:6851283 original size:45 final size:45
Alignment explanation
Indices: 6851234--6852027 Score: 522
Period size: 42 Copynumber: 18.2 Consensus size: 45
6851224 AAAATTTGAT
** * * * *
6851234 CAAAGCTTTTCTAAGCAAAGGCTCAACAACTTTGAAAAATATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
* * * *
6851279 CAAAGCTCCTCTAATCAAAGGCTCAACAACTTTGAAAGA-ATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
* * * * * * *
6851323 TGAAGGCTCCTCTAAGCAGAAGCTTAATGACTTTGGAAAA-ATAAA
1 -CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
* * * * *
6851368 -TAA-CTCCTCTAAATAGAGGCTCAAC-AATTTCAAAAAAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
* * *
6851410 CAAAGCTCCTTTAAACAGAGGCTCAATGACTTTTTAAAAAGATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGAAAAAGATAAA
* *
6851456 CAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTAAAAAGATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
*
6851501 CAAAGCTCTTCTAAACAGAGGCTCAACGACTTTTG-AAAAG-T-AA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGAAAAAGATAAA
** * *
6851544 -ATTGCTCCTCTGAACAGAGGCATC-ACGACTTTGAAAAACATAAA
1 CAAAGCTCCTCTAAACAGAGGC-TCAACGACTTTGAAAAAGATAAA
* * * ** * *
6851588 CGAAGCTCCTCTAATCAAAGGCTCAATAACTTTGGAAGA-ATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
* * * * *
6851632 CGAAGGCTCCTCTAAGCAGAGGCTCAATGACTTTGGAAAA-ACAAA
1 C-AAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
* * * * *
6851677 -TAA-CTCCTCTAAATAGAGGCTCAAC-AATTTCAAAAAAATAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
* * * * *
6851719 CAACGCTCCTCTAAGCAGAGGCTCTATGACTTTCAAAAAG-T-AA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
** * * * *
6851762 -ATTGCTCCTATAAACAGAGGCTCTACGACTTTTAGAAAG-T-AA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
** * * * * *
6851804 -ATTGCTCCTTTAAACAGAGGCTCTACGACTGTCAGAAAG-T-AA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
** * * * *
6851846 -ATTGCTCCTTTAAACAGAGGCTCAACGACTTT-TAGAAGGTAAA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
* * *
6851889 CAAAGCTCTTCTAAACAGAGGCTTAACGACTTTTAAAAA-AT-AA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
* * *
6851932 -AAGGCTCCTCTAATCAGAGGCTCAACAACTTTTG-AAAAG-T-AA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGAAAAAGATAAA
** * *
6851974 -ATTGCTCCTTTAAACAGAGGCATC-ATGACTTTGGAAAAA-ATAAA
1 CAAAGCTCCTCTAAACAGAGGC-TCAACGACTTT-GAAAAAGATAAA
*
6852018 TAAAGCTCCT
1 CAAAGCTCCT
6852028 TGACAATCAA
Statistics
Matches: 608, Mismatches: 111, Indels: 60
0.78 0.14 0.08
Matches are distributed among these distances:
41 26 0.04
42 228 0.38
43 26 0.04
44 84 0.14
45 199 0.33
46 45 0.07
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (45 bp):
CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAGATAAA
Found at i:6851484 original size:132 final size:130
Alignment explanation
Indices: 6851243--6852027 Score: 492
Period size: 132 Copynumber: 6.0 Consensus size: 130
6851233 TCAAAGCTTT
* * * * * *
6851243 TCTAAGCAAAGGCTCAACAACTTTGAAAAATATAAACAAAGCTCCTCTAATCAAAGGCTCAACAA
1 TCTAAACAGAGGCTCAACAA-TTT-AAAAAAATAAA-AAAGCTCCTCTAAACAGAGGCTCAACGA
* * * * *
6851308 CTTTGAAAGAATAAATGAAGGCTCCTCTAAGCAGAAGCTTAATGACTTTGGAAAAATAAA-TAA-
63 CTTTGAAAAAATAAA-CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGGAAAAATAAACTAAG
6851371 CTCC
127 CTCC
* * *
6851375 TCTAAATAGAGGCTCAACAATTTCAAAAAAATAAACAAAGCTCCTTTAAACAGAGGCTCAATGAC
1 TCTAAACAGAGGCTCAACAATTT-AAAAAAATAAA-AAAGCTCCTCTAAACAGAGGCTCAACGAC
* * ** *
6851440 TTTTTAAAAAGATAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTAAAAAGATAAACAAA
64 -TTTGAAAAA-ATAAACAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGGAAAA-ATAAACTAA
*
6851505 GCTCT
126 GCTCC
* ** * ** *
6851510 TCTAAACAGAGGCTCAACGACTTTTGAAAAGT-AAATTGCTCCTCTGAACAGAGGCATC-ACGAC
1 TCTAAACAGAGGCTCAAC-AATTTAAAAAAATAAAAAAGCTCCTCTAAACAGAGGC-TCAACGAC
* * * * * *
6851573 TTTGAAAAACATAAACGAAGCTCCTCTAATCAAAGGCTCAATAACTTTGGAAGAATAAACGAAGG
64 TTTGAAAAA-ATAAACAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGGAAAAATAAACTAA-G
6851638 CTCC
127 CTCC
* * * ** * * * *
6851642 TCTAAGCAGAGGCTCAATGACTTTGGAAAAACAAATAA-CTCCTCTAAATAGAGGCTCAAC-AAT
1 TCTAAACAGAGGCTCAA-CAATTTAAAAAAATAAAAAAGCTCCTCTAAACAGAGGCTCAACGACT
* * * * *
6851705 TTCAAAAAAATAAACAACGCTCCTCTAAGCAGAGGCTCTATGACTTT-CAAAAAGTAAA-T-TGC
65 TT-GAAAAAATAAACAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGGAAAAA-TAAACTAAGC
6851767 TCC
128 TCC
* * * * * * ** * *
6851770 TATAAACAGAGGCTCTACGACTTTTAGAAAGT-AAATTGCTCCTTTAAACAGAGGCTCTACGACT
1 TCTAAACAGAGGCTCAAC-AATTTAAAAAAATAAAAAAGCTCCTCTAAACAGAGGCTCAACGACT
* * * * ** * * * * ** *
6851834 GTCAGAAAGT-AA-ATTGCTCCTTTAAACAGAGGCTCAACGACTTT-TAGAAGGTAAACAAAGCT
65 TTGAAAAAATAAACAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGGA-AAAATAAACTAAGCT
*
6851896 CT
129 CC
* * * * * *
6851898 TCTAAACAGAGGCTTAACGACTTTTAAAAAAT-AAAAGGCTCCTCTAATCAGAGGCTCAACAACT
1 TCTAAACAGAGGCTCAAC-AATTTAAAAAAATAAAAAAGCTCCTCTAAACAGAGGCTCAACGAC-
* ** * *
6851962 TTTG-AAAAGT-AA-ATTGCTCCTTTAAACAGAGGCATC-ATGACTTTGGAAAAAATAAA-TAAA
64 TTTGAAAAAATAAACAAAGCTCCTCTAAGCAGAGGC-TCAATGACTTTGG-AAAAATAAACT-AA
6852022 GCTCC
126 GCTCC
6852027 T
1 T
6852028 TGACAATCAA
Statistics
Matches: 513, Mismatches: 116, Indels: 51
0.75 0.17 0.08
Matches are distributed among these distances:
126 31 0.06
127 6 0.01
128 142 0.28
129 20 0.04
130 5 0.01
131 88 0.17
132 153 0.30
133 33 0.06
134 6 0.01
135 25 0.05
136 4 0.01
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (130 bp):
TCTAAACAGAGGCTCAACAATTTAAAAAAATAAAAAAGCTCCTCTAAACAGAGGCTCAACGACTT
TGAAAAAATAAACAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGGAAAAATAAACTAAGCTCC
Found at i:6851554 original size:177 final size:176
Alignment explanation
Indices: 6851234--6852027 Score: 486
Period size: 170 Copynumber: 4.6 Consensus size: 176
6851224 AAAATTTGAT
** * * * *
6851234 CAAAGCTTTTCTAAGCAAAGGCTCAACAACTTTGAAAAATATAAACAAAGCTCCTCTAATCAAAG
1 CAAAGCTCCTCTAAACAAAGGCTCAATAACTTTGAAAAA-ATAAACAAAGCTCCTCTAAACAGAG
** * * * * * *
6851299 GCTCAACAACTTTGAAAGAATAAATGAAGGCTCCTCTAAGCAGAAGCTTAATGACTTTGGAAAAA
65 GCTCAATGACTTTGAAAAAATAAATCAAAGCTCCTCTAAACAGAAGCTCAACGACTTTGGAAAAA
*
6851364 TAAATAACTCCTCTAAATAGAGGC-TCAAC-AATTTCAAAAAAATAAA
130 TAAATAACTCCTCTAAACAGAGGCATC-ACGAATTTCAAAAAAATAAA
* * * *
6851410 CAAAGCTCCTTTAAACAGAGGCTCAATGACTTTTTAAAAAGATAAACAAAGCTCCTCTAAACAGA
1 CAAAGCTCCTCTAAACAAAGGCTCAATAAC-TTTGAAAAA-ATAAACAAAGCTCCTCTAAACAGA
* * * *
6851475 GGCTCAATGACTTTTAAAAAGATAAA-CAAAGCTCTTCTAAACAGAGGCTCAACGACTTTTGAAA
64 GGCTCAATGACTTTGAAAAA-ATAAATCAAAGCTCCTCTAAACAGAAGCTCAACGACTTTGGAAA
* ** * * * *
6851539 AGTAAATTGCTCCTCTGAACAGAGGCATCACGACTTTGAAAAACATAAA
128 AATAAATAACTCCTCTAAACAGAGGCATCACGAATTTCAAAAAAATAAA
* * * * * *
6851588 CGAAGCTCCTCTAATCAAAGGCTCAATAACTTTGGAAGAATAAACGAAGGCTCCTCTAAGCAGAG
1 CAAAGCTCCTCTAAACAAAGGCTCAATAACTTTGAAAAAATAAAC-AAAGCTCCTCTAAACAGAG
* * * * * **
6851653 GCTCAATGACTTTGGAAAAACAAAT--AA-CTCCTCTAAATAGAGGCTCAAC-AATTTCAAAAAA
65 GCTCAATGACTTTGAAAAAATAAATCAAAGCTCCTCTAAACAGAAGCTCAACGACTTT-GGAAAA
* * * * *
6851714 ATAAACAACGCTCCTCTAAGCAGAGGC-TCTATGACTTTC-AAAAAGT-AA
129 ATAAATAA--CTCCTCTAAACAGAGGCATC-ACGAATTTCAAAAAAATAAA
** * * * ** * * * ** *
6851762 -ATTGCTCCTATAAACAGAGGCTCTACGACTTTTAGAAAGT-AA-ATTGCTCCTTTAAACAGAGG
1 CAAAGCTCCTCTAAACAAAGGCTCAATAACTTTGAAAAAATAAACAAAGCTCCTCTAAACAGAGG
* * * * * * * * * * **
6851824 CTCTACGACTGTCAGAAAGTAAAT---TGCTCCTTTAAACAGAGGCTCAACGACTTT-TAGAAGG
66 CTCAATGACTTTGAAAAAATAAATCAAAGCTCCTCTAAACAGAAGCTCAACGACTTTGGA-AAAA
* * * * * *
6851885 TAAACAAAGCTCTTCTAAACAGAGGCTTAACGACTTT-TAAAAAAT-AA
130 TAAA-TAA-CTCCTCTAAACAGAGGCATCACGAATTTCAAAAAAATAAA
* * * * * ** *
6851932 -AAGGCTCCTCTAATCAGAGGCTCAACAACTTTTG-AAAAGT-AA-ATTGCTCCTTTAAACAGAG
1 CAAAGCTCCTCTAAACAAAGGCTCAATAAC-TTTGAAAAAATAAACAAAGCTCCTCTAAACAGAG
6851993 GCATC-ATGACTTTGGAAAAAATAAAT-AAAGCTCCT
65 GC-TCAATGACTTT-GAAAAAATAAATCAAAGCTCCT
6852028 TGACAATCAA
Statistics
Matches: 485, Mismatches: 112, Indels: 45
0.76 0.17 0.07
Matches are distributed among these distances:
169 1 0.00
170 146 0.30
171 21 0.04
172 2 0.00
173 36 0.07
174 30 0.06
175 9 0.02
176 55 0.11
177 139 0.29
178 46 0.09
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (176 bp):
CAAAGCTCCTCTAAACAAAGGCTCAATAACTTTGAAAAAATAAACAAAGCTCCTCTAAACAGAGG
CTCAATGACTTTGAAAAAATAAATCAAAGCTCCTCTAAACAGAAGCTCAACGACTTTGGAAAAAT
AAATAACTCCTCTAAACAGAGGCATCACGAATTTCAAAAAAATAAA
Found at i:6851782 original size:86 final size:86
Alignment explanation
Indices: 6851243--6851974 Score: 384
Period size: 86 Copynumber: 8.4 Consensus size: 86
6851233 TCAAAGCTTT
* * * * * * * *
6851243 TCTAAGCAAAGGCTCAAC-AACTTTGAAAAATATAAACAAAGCTCCTCTAATCAAAGGCTCAACA
1 TCTAAACAGAGGCTCAACGAA-TTTTAGAAA-ATAAACAAAGCTCCTCTAAACAGAGGCTCTACG
* *
6851307 ACTTTGAAAGAA-TAAATGAAGGCTCC
64 ACTTTCAAA-AAGTAAAT---TGCTCC
* * * * * * * * *
6851333 TCTAAGCAGAAGCTTAATG-ACTTTGGAAAAATAAA-TAA-CTCCTCTAAATAGAGGCTCAAC-A
1 TCTAAACAGAGGCTCAACGAATTTTAG-AAAATAAACAAAGCTCCTCTAAACAGAGGCTCTACGA
* * **
6851394 ATTTCAAAAAAATAAACAAAGCTCC
65 CTTTC-AAAAAGT-AA-ATTGCTCC
* * * * * *
6851419 TTTAAACAGAGGCTCAATGACTTTTTAAAAAGATAAACAAAGCTCCTCTAAACAGAGGCTCAATG
1 TCTAAACAGAGGCTCAACGA-ATTTTAGAAA-ATAAACAAAGCTCCTCTAAACAGAGGCTCTACG
* ** *
6851484 ACTTTTAAAAAGATAAACAAAGCTCT
64 ACTTTCAAAAAG-T-AA-ATTGCTCC
* ** *
6851510 TCTAAACAGAGGCTCAACGACTTTT-GAAAAGT-AA-ATTGCTCCTCTGAACAGAGGCATC-ACG
1 TCTAAACAGAGGCTCAACGAATTTTAGAAAA-TAAACAAAGCTCCTCTAAACAGAGGC-TCTACG
* * **
6851571 ACTTTGAAAAACATAAACGAAGCTCC
64 ACTTTCAAAAA-GTAAA--TTGCTCC
* * * * * * * * *
6851597 TCTAATCAAAGGCTCAA-TAACTTTGGAAGAATAAACGAAGGCTCCTCTAAGCAGAGGCTCAATG
1 TCTAAACAGAGGCTCAACGAATTTTAGAA-AATAAAC-AAAGCTCCTCTAAACAGAGGCTCTACG
* * **
6851661 ACTTTGGAAAAA-CAAATAACTCC
64 ACTTT-CAAAAAGTAAATTGCTCC
* * * * * *
6851684 TCTAAATAGAGGCTCAAC-AATTTCAAAAAAATAAACAACGCTCCTCTAAGCAGAGGCTCTATGA
1 TCTAAACAGAGGCTCAACGAATTT-TAGAAAATAAACAAAGCTCCTCTAAACAGAGGCTCTACGA
6851748 CTTTCAAAAAGTAAATTGCTCC
65 CTTTCAAAAAGTAAATTGCTCC
* * * * ** *
6851770 TATAAACAGAGGCTCTACGACTTTTAGAAAGT-AA-ATTGCTCCTTTAAACAGAGGCTCTACGAC
1 TCTAAACAGAGGCTCAACGAATTTTAGAAAATAAACAAAGCTCCTCTAAACAGAGGCTCTACGAC
* *
6851833 TGTCAGAAAGTAAATTGCTCC
66 TTTCAAAAAGTAAATTGCTCC
* * ** *
6851854 TTTAAACAGAGGCTCAACGACTTTTAGAAGGTAAACAAAGCTCTTCTAAACAGAGGCT-TAACGA
1 TCTAAACAGAGGCTCAACGAATTTTAGAAAATAAACAAAGCTCCTCTAAACAGAGGCTCT-ACGA
* * **
6851918 CTTTTAAAAAATAAAAGGCTCC
65 CTTTCAAAAAGTAAATTGCTCC
*
6851940 TCTAATCAGAGGCTCAAC-AACTTTT-GAAAAGTAAA
1 TCTAAACAGAGGCTCAACGAA-TTTTAGAAAA-TAAA
6851975 TTGCTCCTTT
Statistics
Matches: 508, Mismatches: 100, Indels: 72
0.75 0.15 0.11
Matches are distributed among these distances:
84 72 0.14
85 15 0.03
86 152 0.30
87 116 0.23
88 23 0.05
89 19 0.04
90 71 0.14
91 40 0.08
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (86 bp):
TCTAAACAGAGGCTCAACGAATTTTAGAAAATAAACAAAGCTCCTCTAAACAGAGGCTCTACGAC
TTTCAAAAAGTAAATTGCTCC
Found at i:6851904 original size:128 final size:129
Alignment explanation
Indices: 6851283--6852027 Score: 521
Period size: 128 Copynumber: 5.7 Consensus size: 129
6851273 TATAAACAAA
* * * * * * * * *
6851283 GCTCCTCTAATCAAAGGCTCAACAACTTTGAAAGAATAAATGAAGGCTCCTCTAAGCAGAAGCTT
1 GCTCCTCTAAACAGAGGCTCAACGACTTTCAAAAAAT-AA--AATGCTCCTCTAAACAGAGGCTC
* * * * * *
6851348 AATGACTTTGGAAAA-ATAAA-TAA-CTCCTCTAAATAGAGGCTCAAC-AATTTCAAAAAAATAA
63 AATGACTTT-TAAAAGATAAACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTTAGAAAAAT-A
**
6851409 ACAAA
126 A-ATT
* * * *
6851414 GCTCCTTTAAACAGAGGCTCAATGACTTTTTAAAAAGATAAACAAAGCTCCTCTAAACAGAGGCT
1 GCTCCTCTAAACAGAGGCTCAACGAC-TTTCAAAAA-AT-AA-AATGCTCCTCTAAACAGAGGCT
* *
6851479 CAATGACTTTTAAAAAGATAAACAAAGCTCTTCTAAACAGAGGCTCAACGACTTTT-GAAAAGTA
62 CAATGACTTTT-AAAAGATAAACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTTAGAAAAATA
6851543 AATT
126 AATT
* * * * *
6851547 GCTCCTCTGAACAGAGGCATC-ACGACTTTGAAAAACATAAACGAAGCTCCTCTAATCAAAGGCT
1 GCTCCTCTAAACAGAGGC-TCAACGACTTTCAAAAA-ATAAA--ATGCTCCTCTAAACAGAGGCT
* ** * * * * *
6851611 CAATAAC-TTTGGAAGAATAAACGAAGGCTCCTCTAAGCAGAGGCTCAATGAC-TTTGGAAAAAC
62 CAATGACTTTTAAAAG-ATAAAC-AAAGCTCCTCTAAACAGAGGCTCAACGACTTTTAGAAAAAT
*
6851674 AAATA
125 AAATT
* * * * *
6851679 ACTCCTCTAAATAGAGGCTCAAC-AATTTCAAAAAAATAAACAACGCTCCTCTAAGCAGAGGCTC
1 GCTCCTCTAAACAGAGGCTCAACGACTTTC-AAAAAAT-AA-AATGCTCCTCTAAACAGAGGCTC
* * ** * * *
6851743 TATGACTTTCAAAA-AGT-AA-ATTGCTCCTATAAACAGAGGCTCTACGACTTTTAG-AAAGTAA
63 AATGACTTTTAAAAGA-TAAACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTTAGAAAAATAA
6851804 ATT
127 ATT
* * * * * * * *
6851807 GCTCCTTTAAACAGAGGCTCTACGACTGTCAGAAAGTAAATTGCTCCTTTAAACAGAGGCTCAAC
1 GCTCCTCTAAACAGAGGCTCAACGACTTTCAAAAAATAAAATGCTCCTCTAAACAGAGGCTCAAT
* * * * **
6851872 GACTTTTAGAAGGTAAACAAAGCTCTTCTAAACAGAGGCTTAACGACTTTTA-AAAAATAAAAG
66 GACTTTTAAAAGATAAACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTTAGAAAAATAAATT
* * ** * * *
6851935 GCTCCTCTAATCAGAGGCTCAACAACTTTTGAAAAGTAAATTGCTCCTTTAAACAGAGGCATC-A
1 GCTCCTCTAAACAGAGGCTCAACGACTTTCAAAAAATAAAATGCTCCTCTAAACAGAGGC-TCAA
* * *
6851999 TGACTTTGGAAAAAATAAATAAAGCTCCT
65 TGACTTT-TAAAAGATAAACAAAGCTCCT
6852028 TGACAATCAA
Statistics
Matches: 484, Mismatches: 103, Indels: 56
0.75 0.16 0.09
Matches are distributed among these distances:
126 30 0.06
127 4 0.01
128 148 0.31
129 25 0.05
130 7 0.01
131 67 0.14
132 136 0.28
133 32 0.07
134 6 0.01
135 25 0.05
136 4 0.01
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.24
Consensus pattern (129 bp):
GCTCCTCTAAACAGAGGCTCAACGACTTTCAAAAAATAAAATGCTCCTCTAAACAGAGGCTCAAT
GACTTTTAAAAGATAAACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTTAGAAAAATAAATT
Found at i:6853063 original size:14 final size:13
Alignment explanation
Indices: 6853043--6853097 Score: 60
Period size: 14 Copynumber: 4.2 Consensus size: 13
6853033 TTTCATTCAC
6853043 TTTT-TTTTCTTT
1 TTTTCTTTTCTTT
6853055 TTTTCTTTTCATTT
1 TTTTCTTTTC-TTT
*
6853069 TTTTC-TTTCATT
1 TTTTCTTTTCTTT
*
6853081 TTTTCATTTTATTT
1 TTTTC-TTTTCTTT
6853095 TTT
1 TTT
6853098 CATTTTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
12 11 0.31
13 9 0.25
14 16 0.44
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTCTTTTCTTT
Found at i:6853082 original size:26 final size:25
Alignment explanation
Indices: 6853043--6853097 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
6853033 TTTCATTCAC
*
6853043 TTTTTTTTCTTTTTTTC-TTTTCATT
1 TTTTTTTTCATTTTTTCATTTT-ATT
6853068 TTTTTCTTTCATTTTTTCATTTTATT
1 TTTTT-TTTCATTTTTTCATTTTATT
6853094 TTTT
1 TTTT
6853098 CATTTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.19
26 18 0.67
27 4 0.15
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.82
Consensus pattern (25 bp):
TTTTTTTTCATTTTTTCATTTTATT
Found at i:6853098 original size:21 final size:21
Alignment explanation
Indices: 6853044--6853105 Score: 81
Period size: 21 Copynumber: 2.9 Consensus size: 21
6853034 TTCATTCACT
**
6853044 TTTTTTTCTTTTTTTCTTTTCA
1 TTTTTTTCTTTCATT-TTTTCA
6853066 TTTTTTTCTTTCATTTTTTCA
1 TTTTTTTCTTTCATTTTTTCA
6853087 TTTTATTT-TTTCATTTTTT
1 TTTT-TTTCTTTCATTTTTT
6853106 TTCAAGCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
21 21 0.57
22 16 0.43
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTTTTCTTTCATTTTTTCA
Found at i:6853104 original size:14 final size:13
Alignment explanation
Indices: 6853043--6853103 Score: 65
Period size: 13 Copynumber: 4.7 Consensus size: 13
6853033 TTTCATTCAC
*
6853043 TTTT-TTTTCTTT
1 TTTTCTTTTCATT
6853055 TTTTCTTTTCATT
1 TTTTCTTTTCATT
6853068 TTTT-TCTTTCATT
1 TTTTCT-TTTCATT
6853081 TTTTCATTTT-ATT
1 TTTTC-TTTTCATT
6853094 TTTTCATTTT
1 TTTTC-TTTT
6853104 TTTTCAAGCA
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
12 5 0.11
13 35 0.80
14 3 0.07
15 1 0.02
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTTCATT
Found at i:6855194 original size:40 final size:40
Alignment explanation
Indices: 6855139--6855219 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
6855129 TAGTCCACGC
6855139 TAATGCACAACACATTTTCTCCAATGAGGAATACTTGGAT
1 TAATGCACAACACATTTTCTCCAATGAGGAATACTTGGAT
6855179 TAATGCACAACACATTTTCTCCAATGAGGAATACTTGGAT
1 TAATGCACAACACATTTTCTCCAATGAGGAATACTTGGAT
6855219 T
1 T
6855220 CATATTCTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.31
Consensus pattern (40 bp):
TAATGCACAACACATTTTCTCCAATGAGGAATACTTGGAT
Found at i:6863680 original size:59 final size:58
Alignment explanation
Indices: 6863565--6863842 Score: 430
Period size: 58 Copynumber: 4.8 Consensus size: 58
6863555 TGCTTTCGTA
*
6863565 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTAGAAAACTTATTTT
* * *
6863623 CAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAAACTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTAG-AAAACTTATTTT
* * * *
6863682 CAAGGAAAATTAATACTTTCAACTTTTCCTTAAAAACATTTTTTTTGAAGACTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATA-TTTTTTAGAAAACTTATTTT
* * *
6863741 CAAGGAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTGAAGACTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTAGAAAACTTATTTT
*
6863799 CAAAGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTT
6863843 TTTGGAATTT
Statistics
Matches: 204, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
58 106 0.52
59 91 0.45
60 7 0.03
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (58 bp):
CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTAGAAAACTTATTTT
Found at i:6863844 original size:117 final size:118
Alignment explanation
Indices: 6863569--6863844 Score: 448
Period size: 117 Copynumber: 2.4 Consensus size: 118
6863559 TTCGTACAAG
* *
6863569 GAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTAGAAAACTTATTTTCAAGAAAAAT
1 GAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAACTTATTTTCAAGAAAAAT
*
6863633 TGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAAACTTATTTTCAAG
66 TGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAAACTTATTTTCAAA
* * * *
6863686 GAAAATTAATACTTTCAACTTTTCCTTAAAAACATTTTTTTTGAAGACTTATTTTCAAGGAAAAT
1 GAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAACTTATTTTCAAGAAAAAT
* * *
6863751 TGATACTTTCAACTTTTTCTTAAAAATATTTTTTTG-AAGACTTATTTTCAAA
66 TGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAAACTTATTTTCAAA
6863803 GAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTT
1 GAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTT
6863845 TGGAATTTTA
Statistics
Matches: 146, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
117 85 0.58
118 61 0.42
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (118 bp):
GAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAACTTATTTTCAAGAAAAAT
TGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAAACTTATTTTCAAA
Found at i:6863902 original size:16 final size:16
Alignment explanation
Indices: 6863862--6863894 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
6863852 TTATTTAAAG
6863862 AAAATAAAAAATAAAAA
1 AAAAT-AAAAATAAAAA
6863879 AAAATAAAAATAAAAA
1 AAAATAAAAATAAAAA
6863895 GTACTAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAATAAAAATAAAAA
Found at i:6863943 original size:4 final size:4
Alignment explanation
Indices: 6863919--6863968 Score: 61
Period size: 4 Copynumber: 13.2 Consensus size: 4
6863909 TAATCTAATC
* *
6863919 AATA AA-A AA-A AAAA AAT- AATA AATA AATA AATA AACA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
6863964 AATA A
1 AATA A
6863969 CCTTGGAGTG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
3 9 0.22
4 32 0.78
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:6864617 original size:6 final size:6
Alignment explanation
Indices: 6864608--6864688 Score: 63
Period size: 6 Copynumber: 12.5 Consensus size: 6
6864598 AAGAAAAAGA
* *
6864608 AAAAAT AAAAAT AAAAGT AAAAAT AAAAAT AATATAAT AGATAAAT AATAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA-A-AAT A-A-AAAT AAAAAT
* **
6864660 AATAAT AGATAAAT AGTAAT AAAAAT AAA
1 AAAAAT A-A-AAAT AAAAAT AAAAAT AAA
6864689 TAAGAAAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
6 44 0.71
7 3 0.05
8 12 0.19
9 3 0.05
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (6 bp):
AAAAAT
Found at i:6864629 original size:18 final size:18
Alignment explanation
Indices: 6864602--6864639 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
6864592 AATAAGAAGA
6864602 AAAAGAAAAAATAAAAAT
1 AAAAGAAAAAATAAAAAT
*
6864620 AAAAGTAAAAATAAAAAT
1 AAAAGAAAAAATAAAAAT
6864638 AA
1 AA
6864640 TATAATAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (18 bp):
AAAAGAAAAAATAAAAAT
Found at i:6864654 original size:13 final size:13
Alignment explanation
Indices: 6864611--6864769 Score: 59
Period size: 12 Copynumber: 12.2 Consensus size: 13
6864601 AAAAAGAAAA
6864611 AATAA-AAATAA-
1 AATAATAAATAAT
*
6864622 AAGTAA-AAATAAA
1 AA-TAATAAATAAT
6864635 AATAATATAATAGAT
1 AATAATA-AATA-AT
6864650 AAATAAT-AATAAT
1 -AATAATAAATAAT
*
6864663 AATAGATAAATAGT
1 AATA-ATAAATAAT
6864677 AATAA-AAAT-A-
1 AATAATAAATAAT
* *
6864687 AATAAGAAAAAAT
1 AATAATAAATAAT
* *
6864700 -ATAAT-ATTATT
1 AATAATAAATAAT
*
6864711 TATAGATAAATAAAT
1 AATA-ATAAAT-AAT
* *
6864726 ATATATGTATATTAAT
1 A-ATA-ATA-AATAAT
*
6864742 AAATAAT-AATAGT
1 -AATAATAAATAAT
6864755 AATAATAAATAAT
1 AATAATAAATAAT
6864768 AA
1 AA
6864770 AAATTTAGAG
Statistics
Matches: 111, Mismatches: 18, Indels: 36
0.67 0.11 0.22
Matches are distributed among these distances:
10 5 0.05
11 8 0.07
12 34 0.31
13 21 0.19
14 19 0.17
15 4 0.04
16 17 0.15
17 3 0.03
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (13 bp):
AATAATAAATAAT
Found at i:6864655 original size:16 final size:15
Alignment explanation
Indices: 6864629--6864705 Score: 72
Period size: 14 Copynumber: 5.3 Consensus size: 15
6864619 TAAAAGTAAA
6864629 AATAA-AAATAATAT
1 AATAATAAATAATAT
6864643 AATAGATAAATAATAAT
1 AATA-ATAAATAAT-AT
*
6864660 AATAATAGATAA-AT
1 AATAATAAATAATAT
*
6864674 AGTAATAAA-AATA-
1 AATAATAAATAATAT
* *
6864687 AATAAGAAAAAATAT
1 AATAATAAATAATAT
6864702 AATA
1 AATA
6864706 TTATTTATAG
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
13 9 0.17
14 18 0.35
15 5 0.10
16 14 0.27
17 6 0.12
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (15 bp):
AATAATAAATAATAT
Found at i:6864657 original size:3 final size:3
Alignment explanation
Indices: 6864611--6864769 Score: 51
Period size: 3 Copynumber: 50.7 Consensus size: 3
6864601 AAAAAGAAAA
* * *
6864611 AAT AAA AAT AA- AAGT AAA AAT AAA AAT AAT -AT AAT AGAT AAAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT A-AT -AAT AAT
* * *
6864657 AAT AAT AAT AGAT AAAT AGT AAT AAA AAT AAAT AAG AA- AA- AAT -AT
1 AAT AAT AAT A-AT -AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT
* * * * *
6864702 AAT ATT ATT TAT AGAT AAAT AA- ATAT ATAT GTAT ATT AAT AAAT AAT
1 AAT AAT AAT AAT A-AT -AAT AAT A-AT A-AT -AAT AAT AAT -AAT AAT
*
6864749 AAT AGT AAT AAT AAAT AAT AA
1 AAT AAT AAT AAT -AAT AAT AA
6864770 AAATTTAGAG
Statistics
Matches: 118, Mismatches: 21, Indels: 34
0.68 0.12 0.20
Matches are distributed among these distances:
2 11 0.09
3 75 0.64
4 29 0.25
5 3 0.03
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:6864666 original size:20 final size:20
Alignment explanation
Indices: 6864630--6864691 Score: 83
Period size: 20 Copynumber: 3.2 Consensus size: 20
6864620 AAAAGTAAAA
6864630 ATAAA-AATAAT-ATAATAG
1 ATAAATAATAATAATAATAG
6864648 ATAAATAATAATAATAATAG
1 ATAAATAATAATAATAATAG
* * *
6864668 ATAAATAGTAATAAAAATAA
1 ATAAATAATAATAATAATAG
6864688 ATAA
1 ATAA
6864692 GAAAAAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
18 5 0.13
19 6 0.15
20 28 0.72
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (20 bp):
ATAAATAATAATAATAATAG
Found at i:6864700 original size:20 final size:19
Alignment explanation
Indices: 6864604--6864700 Score: 61
Period size: 23 Copynumber: 4.6 Consensus size: 19
6864594 TAAGAAGAAA
6864604 AAGAAAAAATAAAAATAA-
1 AAGAAAAAATAAAAATAAT
*
6864622 AAGTAAAAATAAAAATAATAT
1 AAGAAAAAATAAAAAT-A-AT
*
6864643 AATAGATAAATAATAATAATAAT
1 -A-AGA-AAA-AATAAAAATAAT
*
6864666 AGATAAATAGTAATAAAAATAAAT
1 A-AGAAA-A--AATAAAAAT-AAT
6864690 AAGAAAAAATA
1 AAGAAAAAATA
6864701 TAATATTATT
Statistics
Matches: 62, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
18 15 0.24
19 1 0.02
20 5 0.08
21 2 0.03
22 6 0.10
23 17 0.27
24 8 0.13
25 8 0.13
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (19 bp):
AAGAAAAAATAAAAATAAT
Found at i:6864799 original size:10 final size:10
Alignment explanation
Indices: 6864739--6864806 Score: 50
Period size: 10 Copynumber: 6.6 Consensus size: 10
6864729 TATGTATATT
*
6864739 AATAAATAAT
1 AATAAATAAA
6864749 AATAGTAATAATA
1 AATA--AATAA-A
6864762 AAT-AATAAA
1 AATAAATAAA
** *
6864771 AATTTAGAGAA
1 AATAAATA-AA
6864782 AA-AAATAAA
1 AATAAATAAA
6864791 AATAAATAAA
1 AATAAATAAA
6864801 AATAAA
1 AATAAA
6864807 AATAGGCCTA
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
9 8 0.17
10 26 0.57
11 4 0.09
12 5 0.11
13 3 0.07
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (10 bp):
AATAAATAAA
Found at i:6866145 original size:4 final size:4
Alignment explanation
Indices: 6866128--6866167 Score: 55
Period size: 4 Copynumber: 9.8 Consensus size: 4
6866118 TAATTAATTA
6866128 ATTT A-TT ATGTT ATTT ATTT ATTT ATTT ATTTT ATTT ATT
1 ATTT ATTT AT-TT ATTT ATTT ATTT ATTT A-TTT ATTT ATT
6866168 ATTATTATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 3 0.09
4 22 0.67
5 8 0.24
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (4 bp):
ATTT
Found at i:6866161 original size:9 final size:9
Alignment explanation
Indices: 6866141--6866178 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
6866131 TATTATGTTA
6866141 TTTATTTA-
1 TTTATTTAT
6866149 TTTATTTAT
1 TTTATTTAT
6866158 TTTATTTAT
1 TTTATTTAT
6866167 TATTA-TTAT
1 T-TTATTTAT
6866176 TTT
1 TTT
6866179 GACTTTATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 10 0.36
9 15 0.54
10 3 0.11
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTATTTAT
Found at i:6866161 original size:13 final size:13
Alignment explanation
Indices: 6866133--6866177 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
6866123 AATTAATTTA
6866133 TTATGTTATTTA-T
1 TTAT-TTATTTATT
6866146 TTATTTATTTATT
1 TTATTTATTTATT
6866159 TTATTTA-TTATT
1 TTATTTATTTATT
6866171 ATTATTT
1 -TTATTT
6866178 TGACTTTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.40
13 18 0.60
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (13 bp):
TTATTTATTTATT
Found at i:6867191 original size:61 final size:57
Alignment explanation
Indices: 6867127--6867541 Score: 330
Period size: 61 Copynumber: 6.8 Consensus size: 57
6867117 TATATTTTTT
*
6867127 TTTTTAAAGAAAAGTTGAAAGTATCAATTTCCTTTGAAAATAAAAATTTCAAAAAAATTA
1 TTTTTAAGGAAAAGTTGAAAGTATCAATTT-CTTTGAAAAT-AAAATTTCAAAAAAA-TA
* * * * *
6867187 TTTTTTGAGGGAAAGTTGAAAGTATCAATTTTTCTTGAAGATAAAAATTTCTAAAAAATA
1 -TTTTTAAGGAAAAGTTGAAAGTATCAATTTCT-TTGAAAAT-AAAATTTCAAAAAAATA
* * * * *
6867247 TTTTTAAGAAAAAGTTGAAAGTATCAATGTTTTTTTAAAATAAAATTTCTAAAAGATA
1 TTTTTAAGGAAAAGTTGAAAGTATCAAT-TTCTTTGAAAATAAAATTTCAAAAAAATA
*
6867305 TTTTTAAGGAAAAGTTGAAAGCATCAATTTTCTTTGAAAATAAAATTTCTAAAATAAAAATTTTC
1 TTTTTAAGGAAAAGTTGAAAGTATCAA-TTTCTTTGAAAATAAAATTTC---AA-AAAAA---T-
6867370 AAAA
57 ---A
* * * *
6867374 GTATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAATTAAAATTTCAGAAAAAAAGCA
1 -T-TTTTAAGGAAAAGTTGAAAGTATCAATTTCT-TTGAAAATAAAATTTC--AAAAAAA-TA
* * * * *
6867437 TTTTTGAGGAAATGTTGGAAA-TA-CTAATTTTCCTTAAAAATAAAATTATCAAGAAAAACA
1 TTTTTAAGGAAAAGTT-GAAAGTATC-AA-TTTCTTTGAAAATAAAATT-TCAA-AAAAATA
* *
6867497 TTTTTAAGGAAAAGTTGAAAGTATTAATTTTCCTTGAAAATAAAA
1 TTTTTAAGGAAAAGTTGAAAGTATCAA-TTTCTTTGAAAATAAAA
6867542 ACCTTCAAAT
Statistics
Matches: 296, Mismatches: 34, Indels: 49
0.78 0.09 0.13
Matches are distributed among these distances:
58 59 0.20
59 36 0.12
60 47 0.16
61 85 0.29
62 14 0.05
63 1 0.00
65 1 0.00
69 6 0.02
70 8 0.03
71 39 0.13
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (57 bp):
TTTTTAAGGAAAAGTTGAAAGTATCAATTTCTTTGAAAATAAAATTTCAAAAAAATA
Found at i:6867312 original size:58 final size:58
Alignment explanation
Indices: 6867127--6867358 Score: 290
Period size: 58 Copynumber: 3.9 Consensus size: 58
6867117 TATATTTTTT
* *
6867127 TTTTTAA-AGAAAAGTTGAAAGTATCAATTTCCTTTGAAAATAAAAATTTCAAAAAAATTA
1 TTTTTAAGA-AAAAGTTGAAAGTATCAATTT-TTTTGAAAATAAAAATTTCTAAAAAA-TA
* ** *
6867187 TTTTTTGAGGGAAAGTTGAAAGTATCAATTTTTCTTGAAGATAAAAATTTCTAAAAAATA
1 -TTTTTAAGAAAAAGTTGAAAGTATCAATTTTT-TTGAAAATAAAAATTTCTAAAAAATA
* *
6867247 TTTTTAAGAAAAAGTTGAAAGTATCAATGTTTTTTTAAAAT-AAAATTTCTAAAAGATA
1 TTTTTAAGAAAAAGTTGAAAGTATCAAT-TTTTTTGAAAATAAAAATTTCTAAAAAATA
* *
6867305 TTTTTAAGGAAAAGTTGAAAGCATCAATTTTCTTTGAAAAT-AAAATTTCTAAAA
1 TTTTTAAGAAAAAGTTGAAAGTATCAATTTT-TTTGAAAATAAAAATTTCTAAAA
6867359 TAAAAATTTT
Statistics
Matches: 152, Mismatches: 15, Indels: 11
0.85 0.08 0.06
Matches are distributed among these distances:
57 3 0.02
58 63 0.41
59 31 0.20
60 7 0.05
61 48 0.32
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.38
Consensus pattern (58 bp):
TTTTTAAGAAAAAGTTGAAAGTATCAATTTTTTTGAAAATAAAAATTTCTAAAAAATA
Found at i:6867402 original size:71 final size:72
Alignment explanation
Indices: 6867282--6867424 Score: 204
Period size: 71 Copynumber: 2.0 Consensus size: 72
6867272 AATGTTTTTT
6867282 TAAAATAAAATTTCTAAAAGATATTTTTAAGGAAAAGTTGAAAGCATCAA-TTTTCTTTGAAAAT
1 TAAAATAAAATTTCTAAAAGATATTTTTAAGGAAAAGTTGAAAGCATCAATTTTTC-TTGAAAAT
6867346 AAAATTTC
65 AAAATTTC
* * *
6867354 TAAAATAAAAATTT-TCAAAAG-TA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAT
1 TAAAAT-AAAATTTCT-AAAAGATATTTTTAAGGAAAAGTTGAAAGCATCAATTTTTCTTGAAAA
6867416 TAAAATTTC
64 TAAAATTTC
6867425 AGAAAAAAAG
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
71 39 0.60
72 14 0.22
73 12 0.18
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.37
Consensus pattern (72 bp):
TAAAATAAAATTTCTAAAAGATATTTTTAAGGAAAAGTTGAAAGCATCAATTTTTCTTGAAAATA
AAATTTC
Found at i:6868609 original size:4 final size:4
Alignment explanation
Indices: 6868602--6868645 Score: 61
Period size: 4 Copynumber: 10.2 Consensus size: 4
6868592 TGACATTTTA
6868602 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATCTTT ATTT GATTT A
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT A--TTT ATTT -ATTT A
6868646 CTAACCTCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
4 29 0.78
5 4 0.11
6 4 0.11
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (4 bp):
ATTT
Found at i:6874795 original size:169 final size:168
Alignment explanation
Indices: 6874516--6874856 Score: 664
Period size: 169 Copynumber: 2.0 Consensus size: 168
6874506 GATTAGGAAG
6874516 GATGCATTTTCATTCATTTCTTCTTATGCCTTCATTATTGCCATTTTTCCATTTTTCCAAACACA
1 GATGCATTTTCATTCATTTCTTCTTATGCCTTCATTATTGCCATTTTTCCATTTTTCCAAACACA
6874581 TCTTGCCAACATATCCCATTTCATTCAATTTCAGGTCTTTAAATGAATAAGAAGATAATTATGAT
66 TCTTGCCAACATATCCCATTTCATTCAATTTCAGGTCTTTAAATGAATAAGAA-ATAATTATGAT
6874646 AATGATCAAAAGGTTAATTTTGAGAATTCAATTAACATT
130 AATGATCAAAAGGTTAATTTTGAGAATTCAATTAACATT
6874685 GATGCATTTTCATTCATTTCTTCTTATGCCTTCATTATTGCCATTTTTCCATTTTTCCAAACACA
1 GATGCATTTTCATTCATTTCTTCTTATGCCTTCATTATTGCCATTTTTCCATTTTTCCAAACACA
6874750 TCTTGCCAACATATCCCATTTCATTCAATTTCAGGTCTTTAAATGAATAAGAAATAATTATGATA
66 TCTTGCCAACATATCCCATTTCATTCAATTTCAGGTCTTTAAATGAATAAGAAATAATTATGATA
*
6874815 ATGATCAAAAGGTTAATTTTGATAATTCAATTAACATT
131 ATGATCAAAAGGTTAATTTTGAGAATTCAATTAACATT
6874853 GATG
1 GATG
6874857 AACTTGACAA
Statistics
Matches: 171, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
168 53 0.31
169 118 0.69
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (168 bp):
GATGCATTTTCATTCATTTCTTCTTATGCCTTCATTATTGCCATTTTTCCATTTTTCCAAACACA
TCTTGCCAACATATCCCATTTCATTCAATTTCAGGTCTTTAAATGAATAAGAAATAATTATGATA
ATGATCAAAAGGTTAATTTTGAGAATTCAATTAACATT
Found at i:6878248 original size:17 final size:17
Alignment explanation
Indices: 6878228--6878274 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
6878218 TACTATGTTT
6878228 GAAAAAAGAAAAATGAA
1 GAAAAAAGAAAAATGAA
*
6878245 GAAAAATGAAAAATGAA
1 GAAAAAAGAAAAATGAA
* *
6878262 AAAAAAATAAAAA
1 GAAAAAAGAAAAA
6878275 ATAAAAAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.09
Consensus pattern (17 bp):
GAAAAAAGAAAAATGAA
Found at i:6878273 original size:24 final size:24
Alignment explanation
Indices: 6878227--6878286 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
6878217 GTACTATGTT
**
6878227 TGAAAAAAGAAAAATGAAGAAAAA
1 TGAAAAAAGAAAAAAAAAGAAAAA
* *
6878251 TGAAAAATGAAAAAAAAATAAAAAA
1 TGAAAAAAGAAAAAAAAA-GAAAAA
*
6878276 TAAAAAAAGAA
1 TGAAAAAAGAA
6878287 GACTCAAGGC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
24 15 0.52
25 14 0.48
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (24 bp):
TGAAAAAAGAAAAAAAAAGAAAAA
Found at i:6878280 original size:17 final size:17
Alignment explanation
Indices: 6878236--6878283 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
6878226 TTGAAAAAAG
* * *
6878236 AAAAATGAAGAAAAATG
1 AAAAATAAAAAAAAATA
6878253 AAAAATGAAAAAAAAATA
1 AAAAAT-AAAAAAAAATA
6878271 AAAAATAAAAAAA
1 AAAAATAAAAAAA
6878284 GAAGACTCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.10
Consensus pattern (17 bp):
AAAAATAAAAAAAAATA
Found at i:6879502 original size:91 final size:92
Alignment explanation
Indices: 6879270--6879635 Score: 349
Period size: 91 Copynumber: 4.1 Consensus size: 92
6879260 TCATGGAGCC
* * * * * * *
6879270 TTATTTATTTTTCAAAATTTGTTGAGCCTCTGATTAAATGAGCTTTATTTA-TTTTTC-AAATTT
1 TTATTT-TTTTTCAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTTCAAAAGTC
* *
6879333 GTTGAGCCTTTATTTAGAA-GAGC----T
65 ATTGAGCTTTTATTTA-AAGGAGCTTTGT
* * * * * *
6879357 TCATTTATTTTCCAAAGTTGTTGAGCCTCTTATT-GAGGAGCTTTGTTTATTTTTTCAAAAGTTA
1 TTATTTTTTTTCAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTTCAAAAGTCA
*
6879421 TTGAGCTTTTATTTAAAGGAACTTTGT
66 TTGAGCTTTTATTTAAAGGAGCTTTGT
*
6879448 TTATTTTTTTTCAAAAGTCGTTAAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTTTCAAAAGTC
1 TTATTTTTTTTCAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTA-TTTTTTCAAAAGTC
* * * * *
6879513 GTTAAGCCTCTGA-TTAGAGGAGCTTTGT
65 ATTGAG-CTTTTATTTAAAGGAGCTTTGT
* * *
6879541 TTA--TTTTTTAAAAAGTTGTTAAGCCTCTGATTAGAAGAGCTTTGTTTATTTTTTAAAAAGTCA
1 TTATTTTTTTTCAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTTCAAAAGTCA
* * * * *
6879604 TTGAGCCTCTGTTTAGAGGAGTTTTGT
66 TTGAGCTTTTATTTAAAGGAGCTTTGT
6879631 TTATT
1 TTATT
6879636 CTCTAAAAAG
Statistics
Matches: 229, Mismatches: 37, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
85 12 0.05
86 32 0.14
87 27 0.12
89 1 0.00
90 34 0.15
91 71 0.31
92 15 0.07
93 33 0.14
94 4 0.02
ACGTcount: A:0.25, C:0.11, G:0.17, T:0.47
Consensus pattern (92 bp):
TTATTTTTTTTCAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTTCAAAAGTCA
TTGAGCTTTTATTTAAAGGAGCTTTGT
Found at i:6879563 original size:45 final size:45
Alignment explanation
Indices: 6879264--6879663 Score: 377
Period size: 45 Copynumber: 9.0 Consensus size: 45
6879254 TGATTGTCAT
* * * *
6879264 GGAGCCTTATTTA-TTTTTCAAAATTTGTTGAGCCTCTGATTAAA
1 GGAGCTTTGTTTATTTTTTCAAAAGTTGTTGAGCCTCTGATTAGA
* * * *
6879308 TGAGCTTTATTTA-TTTTTC-AAATTTGTTGAGCCT-TTATTTAGA
1 GGAGCTTTGTTTATTTTTTCAAAAGTTGTTGAGCCTCTGA-TTAGA
* ** * *
6879351 AGAGCTTCATTTA--TTTTCCAAAGTTGTTGAGCCTCTTATT-GA
1 GGAGCTTTGTTTATTTTTTCAAAAGTTGTTGAGCCTCTGATTAGA
* * * *
6879393 GGAGCTTTGTTTATTTTTTCAAAAGTTATTGAG-CTTTTATTTAAA
1 GGAGCTTTGTTTATTTTTTCAAAAGTTGTTGAGCCTCTGA-TTAGA
* * *
6879438 GGAACTTTGTTTATTTTTTTTCAAAAGTCGTTAAGCCTCTGATTAGA
1 GGAGCTTTGTTTA--TTTTTTCAAAAGTTGTTGAGCCTCTGATTAGA
* *
6879485 GGAGCTTTGTTTATTTTTTTCAAAAGTCGTTAAGCCTCTGATTAGA
1 GGAGCTTTGTTTA-TTTTTTCAAAAGTTGTTGAGCCTCTGATTAGA
* *
6879531 GGAGCTTTGTTTATTTTTTAAAAAGTTGTTAAGCCTCTGATTAGA
1 GGAGCTTTGTTTATTTTTTCAAAAGTTGTTGAGCCTCTGATTAGA
* * ** *
6879576 AGAGCTTTGTTTATTTTTTAAAAAGTCATTGAGCCTCTGTTTAGA
1 GGAGCTTTGTTTATTTTTTCAAAAGTTGTTGAGCCTCTGATTAGA
* * * * * *
6879621 GGAGTTTTGTTTATTCTCTAAAAAGTTG-TGAACCTCTGCTTAG
1 GGAGCTTTGTTTATTTTTTCAAAAGTTGTTGAGCCTCTGATTAG
6879664 GGGTGTTTCG
Statistics
Matches: 309, Mismatches: 37, Indels: 20
0.84 0.10 0.05
Matches are distributed among these distances:
42 19 0.06
43 51 0.17
44 51 0.17
45 105 0.34
46 46 0.15
47 33 0.11
48 4 0.01
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.46
Consensus pattern (45 bp):
GGAGCTTTGTTTATTTTTTCAAAAGTTGTTGAGCCTCTGATTAGA
Found at i:6879873 original size:4 final size:4
Alignment explanation
Indices: 6879864--6879902 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 4
6879854 GGGTTAATTC
6879864 ATTT ATTT A-TT ATGTT ATTT ATTT ATTT A-TT ATTT ATTT
1 ATTT ATTT ATTT AT-TT ATTT ATTT ATTT ATTT ATTT ATTT
6879903 TTTTGACTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 6 0.19
4 22 0.69
5 4 0.12
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (4 bp):
ATTT
Found at i:6879889 original size:20 final size:19
Alignment explanation
Indices: 6879864--6879902 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
6879854 GGGTTAATTC
6879864 ATTTATTTATTATGTTATTT
1 ATTTATTTATTAT-TTATTT
6879884 ATTTATTTATTATTTATTT
1 ATTTATTTATTATTTATTT
6879903 TTTTGACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (19 bp):
ATTTATTTATTATTTATTT
Found at i:6880515 original size:24 final size:24
Alignment explanation
Indices: 6880483--6880528 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
6880473 TTTTTATCTT
6880483 TTATACCCAGGCGGAATGATGTTG
1 TTATACCCAGGCGGAATGATGTTG
6880507 TTATACCCAGGCGGAATGATGT
1 TTATACCCAGGCGGAATGATGT
6880529 CGTTTTGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (24 bp):
TTATACCCAGGCGGAATGATGTTG
Found at i:6880907 original size:63 final size:62
Alignment explanation
Indices: 6880839--6881103 Score: 188
Period size: 58 Copynumber: 4.4 Consensus size: 62
6880829 TGATCTCTTC
6880839 AAAAATAAAAATTTAAAAAAATATATATTTTTTAAAAGAAAGTTGAAAGTATCAA-TTTCTTTT
1 AAAAATAAAAATTTAAAAAAA-AT-TATTTTTTAAAAGAAAGTTGAAAGTATCAATTTTCTTTT
* * ** *
6880902 AAAAATAAAAATTTCAAAAAAATTATTTTTTGAGGGAAAGTTGAAAGTATTAATTTTC-TTT
1 AAAAATAAAAATTTAAAAAAAATTATTTTTTAAAAGAAAGTTGAAAGTATCAATTTTCTTTT
* * * ** * * * * * *
6880963 GAAGATAAAATTTTCTAAAAAA-TAATTTTGAGAA-AAACTTGAAAGTATTAATTTTC-CTT
1 AAAAATAAAAATTTAAAAAAAATTATTTTTTAAAAGAAAGTTGAAAGTATCAATTTTCTTTT
* ** * * ** * *
6881022 GAAAAT-AAAATTTCTAAAAGA-TATTTTTGAGGA-AAAGTTGAAAGTATTAATTTTC-CTT
1 AAAAATAAAAATTTAAAAAAAATTATTTTTTAAAAGAAAGTTGAAAGTATCAATTTTCTTTT
* *
6881080 GAAAATAAAATTTCTAAAATAAAA
1 AAAAATAAAAATT-TAAAA-AAAA
6881104 ATTTCCAAAA
Statistics
Matches: 171, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
58 53 0.31
59 33 0.19
60 9 0.05
61 50 0.29
62 6 0.04
63 20 0.12
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.37
Consensus pattern (62 bp):
AAAAATAAAAATTTAAAAAAAATTATTTTTTAAAAGAAAGTTGAAAGTATCAATTTTCTTTT
Found at i:6880948 original size:61 final size:59
Alignment explanation
Indices: 6880834--6881283 Score: 284
Period size: 61 Copynumber: 7.3 Consensus size: 59
6880824 TTCAATGATC
* * * * *
6880834 TCTTCAAAAATAAAAATTTAAAAAAATATATATTTTTTAAAAGAAAGTTGAAAGTATCAA-TT
1 TCTTTAAAAATAAAAATTT-CAAAAA-A-ATATTTTTGAGAA-AAAGTTGAAAGTATTAATTT
**
6880896 TCTTTTAAAAATAAAAATTTCAAAAAAATTATTTTTTGAGGGAAAGTTGAAAGTATTAATTT
1 TC-TTTAAAAATAAAAATTTCAAAAAAA-TA-TTTTTGAGAAAAAGTTGAAAGTATTAATTT
* * * * * *
6880958 TCTTTGAAGATAAAATTTTCTAAAAAATAATTTTGAGAAAAACTTGAAAGTATTAATTT
1 TCTTTAAAAATAAAAATTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATTAATTT
* * * * *
6881017 TCCTTGAAAAT-AAAATTTCTAAAAGATATTTTTGAGGAAAAGTTGAAAGTATTAATTT
1 TCTTTAAAAATAAAAATTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATTAATTT
* * * *
6881075 TCCTTGAAAAT-AAAATTTCTAAAATAAAAATTTCCAAAAGGTATTTTGAGGAAAAGTTGAAAAT
1 TCTTTAAAAATAAAAATTTC---AA-AAAAA--T-----A--T-TTTTGAGAAAAAGTTGAAAGT
6881139 ATTAATTT
52 ATTAATTT
* * * * * * * **
6881147 T-TCTTGAAATTAAAATTTTAGAAAAAAAGCATTTTTGAGGAAAAGTTGGAAGTACCAATTT
1 TCT-TTAAAAATAAAAATTT-CAAAAAAA-TATTTTTGAGAAAAAGTTGAAAGTATTAATTT
* * *
6881208 T-TCTTAAAAAT-AAAATTATCAAGAAAAACATTTTTAAGGAAAAGTTGAAAGTATTAAGTTT
1 TCT-TTAAAAATAAAAATT-TCAA-AAAAATATTTTTGAGAAAAAGTTGAAAGTATTAA-TTT
*
6881269 TC-TTGAAAATAAAAA
1 TCTTTAAAAATAAAAA
6881284 CCTTTAAATG
Statistics
Matches: 318, Mismatches: 44, Indels: 53
0.77 0.11 0.13
Matches are distributed among these distances:
58 61 0.19
59 35 0.11
60 42 0.13
61 89 0.28
62 22 0.07
63 16 0.05
64 2 0.01
69 1 0.00
70 5 0.02
71 3 0.01
72 36 0.11
73 6 0.02
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.36
Consensus pattern (59 bp):
TCTTTAAAAATAAAAATTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATTAATTT
Found at i:6881016 original size:59 final size:58
Alignment explanation
Indices: 6880877--6881107 Score: 284
Period size: 58 Copynumber: 3.9 Consensus size: 58
6880867 TTTTTAAAAG
* * * * * *
6880877 AAAGTTGAAAGTATCAA-TTTCTTTTAAAAATAAAAATTTCAAAAAAATTATTTTTTGAGGG
1 AAAGTTGAAAGTATTAATTTTC-CTTGAAAAT-AAAATTTCTAAAAAA-TA-ATTTTGAGGA
* * *
6880938 AAAGTTGAAAGTATTAATTTTCTTTGAAGATAAAATTTTCTAAAAAATAATTTTGAGAA
1 AAAGTTGAAAGTATTAATTTTCCTTGAAAATAAAA-TTTCTAAAAAATAATTTTGAGGA
* * *
6880997 AAACTTGAAAGTATTAATTTTCCTTGAAAATAAAATTTCTAAAAGATATTTTTGAGGA
1 AAAGTTGAAAGTATTAATTTTCCTTGAAAATAAAATTTCTAAAAAATAATTTTGAGGA
*
6881055 AAAGTTGAAAGTATTAATTTTCCTTGAAAATAAAATTTCTAAAATAAAAATTT
1 AAAGTTGAAAGTATTAATTTTCCTTGAAAATAAAATTTCTAAAA-AATAATTT
6881108 CCAAAAGGTA
Statistics
Matches: 150, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
58 63 0.42
59 44 0.29
60 6 0.04
61 33 0.22
62 4 0.03
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (58 bp):
AAAGTTGAAAGTATTAATTTTCCTTGAAAATAAAATTTCTAAAAAATAATTTTGAGGA
Found at i:6881069 original size:117 final size:120
Alignment explanation
Indices: 6880881--6881107 Score: 320
Period size: 117 Copynumber: 1.9 Consensus size: 120
6880871 TAAAAGAAAG
* *
6880881 TTGAAAGTATCAATTTCTTTTAAAAATAAAAATTTCAAAAAAATTATTTTTTGAGGGAAAGTTGA
1 TTGAAAGTATCAATTTCTCTTAAAAATAAAAATTTCAAAAAAATTATTTTTTGAGGAAAAGTTGA
* * *
6880946 AAGTATTAATTTTCTTTGAAGATAAAATTTTCTAAAA-AATAATTTTGAGAAAAAC
66 AAGTATTAATTTTCCTTGAAAATAAAA-TTTCTAAAATAAAAATTTTGAGAAAAAC
* * * *
6881001 TTGAAAGTATTAATTT-TCCTTGAAAAT-AAAATTTCTAAAAGA-TA-TTTTTGAGGAAAAGTTG
1 TTGAAAGTATCAATTTCT-CTTAAAAATAAAAATTTCAAAAAAATTATTTTTTGAGGAAAAGTTG
6881062 AAAGTATTAATTTTCCTTGAAAATAAAATTTCTAAAATAAAAATTT
65 AAAGTATTAATTTTCCTTGAAAATAAAATTTCTAAAATAAAAATTT
6881108 CCAAAAGGTA
Statistics
Matches: 96, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
116 9 0.09
117 49 0.51
118 2 0.02
119 14 0.15
120 22 0.23
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (120 bp):
TTGAAAGTATCAATTTCTCTTAAAAATAAAAATTTCAAAAAAATTATTTTTTGAGGAAAAGTTGA
AAGTATTAATTTTCCTTGAAAATAAAATTTCTAAAATAAAAATTTTGAGAAAAAC
Found at i:6881100 original size:14 final size:15
Alignment explanation
Indices: 6881081--6881113 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6881071 ATTTTCCTTG
*
6881081 AAAAT-AAAATTTCT
1 AAAATAAAAATTTCC
6881095 AAAATAAAAATTTCC
1 AAAATAAAAATTTCC
6881110 AAAA
1 AAAA
6881114 GGTATTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAATAAAAATTTCC
Found at i:6881101 original size:72 final size:72
Alignment explanation
Indices: 6881023--6881164 Score: 223
Period size: 72 Copynumber: 2.0 Consensus size: 72
6881013 ATTTTCCTTG
* *
6881023 AAAAT-AAAATTTCTAAAAGATATTTTTGAGGAAAAGTTGAAAGTATTAATTTTCCTTGAAAATA
1 AAAATAAAAATTTCCAAAAGATA-TTTTGAGGAAAAGTTGAAAATATTAATTTTCCTTGAAAATA
6881087 AAATTTCT
65 AAATTTCT
* * *
6881095 AAAATAAAAATTTCCAAAAGGTATTTTGAGGAAAAGTTGAAAATATTAATTTTTCTTGAAATTAA
1 AAAATAAAAATTTCCAAAAGATATTTTGAGGAAAAGTTGAAAATATTAATTTTCCTTGAAAATAA
6881160 AATTT
66 AATTT
6881165 TAGAAAAAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 49 0.77
73 15 0.23
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.37
Consensus pattern (72 bp):
AAAATAAAAATTTCCAAAAGATATTTTGAGGAAAAGTTGAAAATATTAATTTTCCTTGAAAATAA
AATTTCT
Found at i:6881331 original size:19 final size:19
Alignment explanation
Indices: 6881307--6881350 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
6881297 TAAGGAAAAG
6881307 TTGAAAGTATCAA-TTTTCC
1 TTGAAAGTATCAAGTTTT-C
*
6881326 TTGAAAGTATTAAGTTTTC
1 TTGAAAGTATCAAGTTTTC
6881345 TTGAAA
1 TTGAAA
6881351 ATAAAAACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (19 bp):
TTGAAAGTATCAAGTTTTC
Found at i:6881336 original size:74 final size:74
Alignment explanation
Indices: 6881252--6881402 Score: 302
Period size: 74 Copynumber: 2.0 Consensus size: 74
6881242 TAAGGAAAAG
6881252 TTGAAAGTATTAAGTTTTCTTGAAAATAAAAACCTTTAAATGCTTTAAGGAAAAGTTGAAAGTAT
1 TTGAAAGTATTAAGTTTTCTTGAAAATAAAAACCTTTAAATGCTTTAAGGAAAAGTTGAAAGTAT
6881317 CAATTTTCC
66 CAATTTTCC
6881326 TTGAAAGTATTAAGTTTTCTTGAAAATAAAAACCTTTAAATGCTTTAAGGAAAAGTTGAAAGTAT
1 TTGAAAGTATTAAGTTTTCTTGAAAATAAAAACCTTTAAATGCTTTAAGGAAAAGTTGAAAGTAT
6881391 CAATTTTCC
66 CAATTTTCC
6881400 TTG
1 TTG
6881403 TATGAAAGCA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 77 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (74 bp):
TTGAAAGTATTAAGTTTTCTTGAAAATAAAAACCTTTAAATGCTTTAAGGAAAAGTTGAAAGTAT
CAATTTTCC
Found at i:6882115 original size:15 final size:15
Alignment explanation
Indices: 6882082--6882114 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
6882072 CCCAAAATAC
6882082 TTTTAGAAACTTTTA
1 TTTTAGAAACTTTTA
*
6882097 TTTTGGAAA-TTTTA
1 TTTTAGAAACTTTTA
6882111 TTTT
1 TTTT
6882115 TAAAGAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.27, C:0.03, G:0.09, T:0.61
Consensus pattern (15 bp):
TTTTAGAAACTTTTA
Found at i:6883902 original size:114 final size:114
Alignment explanation
Indices: 6883618--6883885 Score: 473
Period size: 114 Copynumber: 2.4 Consensus size: 114
6883608 ATCTCAAAAT
* * * *
6883618 TTCAAAGTTTTTCATTTGAATTTTGAAGGTTCACATTCAAGAAATCTTAGAGTTTCACATCTAAG
1 TTCAAAGCTTTTCATTTGAATTTTGGAGATTCACATCCAAGAAATCTTAGAGTTTCACATCTAAG
6883683 TTCAAAGGTTCTCACTCAAAAATTTAGAGATTCGCATCCAAAAGTTGAG
66 TTCAAAGGTTCTCACTCAAAAATTTAGAGATTCGCATCCAAAAGTTGAG
** *
6883732 TTCAAAGCTTTTTGTTTGAATTTTGGAGATTCACATCCAAGAAATCTTAGAGTTTCACATCTATG
1 TTCAAAGCTTTTCATTTGAATTTTGGAGATTCACATCCAAGAAATCTTAGAGTTTCACATCTAAG
6883797 TTCAAAGGTTCTCACTCAAAAATTTAGAGATTCGCATCCAAAAGTTGAG
66 TTCAAAGGTTCTCACTCAAAAATTTAGAGATTCGCATCCAAAAGTTGAG
6883846 TTCAAAGCTTTTCATTTGAATTTTGGAGATTCACATCCAA
1 TTCAAAGCTTTTCATTTGAATTTTGGAGATTCACATCCAA
6883886 AAGTTCAAAA
Statistics
Matches: 145, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 145 1.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (114 bp):
TTCAAAGCTTTTCATTTGAATTTTGGAGATTCACATCCAAGAAATCTTAGAGTTTCACATCTAAG
TTCAAAGGTTCTCACTCAAAAATTTAGAGATTCGCATCCAAAAGTTGAG
Found at i:6884033 original size:79 final size:79
Alignment explanation
Indices: 6883947--6884103 Score: 262
Period size: 79 Copynumber: 2.0 Consensus size: 79
6883937 GTTTCACATC
*
6883947 TCAAAGATTCTCATTTGAATTCAAAGATTCACA-TCTGATAAATTTTGGGTTTCACACCTCAAAG
1 TCAAAGATTCTCATTTGAATTCAAAGATTCACATTC-GACAAATTTTGGGTTTCACACCTCAAAG
6884011 ATTCTCATTTGAAAT
65 ATTCTCATTTGAAAT
* * *
6884026 TCAAAGATTTTCATTTGAATTCAAAGATTCATATTCGACAAATTTTGGGTTTCACACCTTAAAGA
1 TCAAAGATTCTCATTTGAATTCAAAGATTCACATTCGACAAATTTTGGGTTTCACACCTCAAAGA
6884091 TTCTCATTTGAAA
66 TTCTCATTTGAAA
6884104 AGTCTTAAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
79 71 0.97
80 2 0.03
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (79 bp):
TCAAAGATTCTCATTTGAATTCAAAGATTCACATTCGACAAATTTTGGGTTTCACACCTCAAAGA
TTCTCATTTGAAAT
Found at i:6884048 original size:20 final size:21
Alignment explanation
Indices: 6884005--6884055 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
6883995 GTTTCACACC
6884005 TCAAAGATTCTCATTTGAAAT
1 TCAAAGATTCTCATTTGAAAT
*
6884026 TCAAAGATTTTCATTTG-AAT
1 TCAAAGATTCTCATTTGAAAT
6884046 TCAAAGATTC
1 TCAAAGATTC
6884056 ATATTCGACA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (21 bp):
TCAAAGATTCTCATTTGAAAT
Found at i:6884206 original size:71 final size:68
Alignment explanation
Indices: 6884086--6884766 Score: 365
Period size: 71 Copynumber: 10.0 Consensus size: 68
6884076 TTCACACCTT
* *
6884086 AAAGATTCTCATTTGAAAAGTCTTAAAAATTCTCATTTGAGAAACGTCTTAAAGATTCTCATTTA
1 AAAGATTCTCATTTGAAAAGTCTTAAAGATTCTTATTT--GAAA-GTCTTAAAGATTCTCATTTA
6884151 AGACTC
63 AGACTC
*
6884157 AAAGATTCTCATATGAAAATGTCTTAAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTTA
1 AAAGATTCTCATTTGAAAA-GTCTTAAAGATTCTTATTT-GAAA-GTCTTAAAGATTCTCATTTA
*
6884222 AAACTC
63 AGACTC
* * *
6884228 AAAGATTCTCATTTGGAAACA-TCTTAAAGATT-TTCATTT--AAGACTCAAAGATTCTTATTTG
1 AAAGATTCTCATTT-GAAA-AGTCTTAAAGATTCTT-ATTTGAAAGTCTTAAAGATTCTCATTT-
* *
6884289 GAAATGTCTT
62 --AA-GACTC
* * * * *
6884299 AAAGATTCTCATTT---AAGACTCAAAGATTCTCATTTGAAAAGTCTTAAAGATTTTTATTTAAG
1 AAAGATTCTCATTTGAAAAGTCTTAAAGATTCTTATTTG-AAAGTCTTAAAGATTCTCATTTAAG
6884361 ACTC
65 ACTC
* *
6884365 AAAGATTCTCATTTGGAAACA-TCTTAAAGATTCTTATTT-AAA-ACTCAAAGATTCTCATTTCA
1 AAAGATTCTCATTT-GAAA-AGTCTTAAAGATTCTTATTTGAAAGTCTTAAAGATTCTCATTT--
* *
6884427 AAATGTCTT
62 -AA-GACTC
* * * * *
6884436 AAAGATTTTCATTTGGAAATA-TTTTAAAGATTCTTATTT--AAGACTCAAAGAATCTCATTTGA
1 AAAGATTCTCATTT-GAAA-AGTCTTAAAGATTCTTATTTGAAAGTCTTAAAGATTCTCATTT-A
* *
6884498 AAACATTTT
63 AGAC---TC
* * * ** * * *
6884507 AAATACTCTCATTT---AAGACACAAA-ACTTCTTATTTGAAAACATTTTAAAGATTCTCATCTA
1 AAAGATTCTCATTTGAAAAGTCTTAAAGA-TTCTTATTTG-AAA-GTCTTAAAGATTCTCATTTA
6884568 AGACTC
63 AGACTC
* * * * *
6884574 AAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTT--AAGACTCAAAGA---T-A--AAAT
1 AAAGATTCTCATTTGAAAA-GTCTTAAAGATTCTTATTTGAAAGTCTTAAAGATTCTCATTTAA-
* *
6884631 GTCTT
64 GACTC
* * * *
6884636 AAAGATTCTCATTT---AAGACTCAAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTT-A
1 AAAGATTCTCATTTGAAAAGTCTTAAAGATTCTTATTTG-AAA-GTCTTAAAGATTCTCATTTAA
6884697 -A---
64 GACTC
* * *
6884698 AAA-ATTCTCATTT---AAGACTCAAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAA
1 AAAGATTCTCATTTGAAAAGTCTTAAAGATTCTTATTTG-AAA-GTCTTAAAGATTCTCATTTAA
6884759 GACTC
64 GACTC
6884764 AAA
1 AAA
6884767 ACTTCATCAA
Statistics
Matches: 482, Mismatches: 75, Indels: 111
0.72 0.11 0.17
Matches are distributed among these distances:
58 16 0.03
59 2 0.00
61 59 0.12
62 28 0.06
63 2 0.00
64 1 0.00
65 1 0.00
66 24 0.05
67 79 0.16
68 9 0.02
69 2 0.00
70 50 0.10
71 186 0.39
72 22 0.05
73 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.37
Consensus pattern (68 bp):
AAAGATTCTCATTTGAAAAGTCTTAAAGATTCTTATTTGAAAGTCTTAAAGATTCTCATTTAAGA
CTC
Found at i:6884232 original size:46 final size:46
Alignment explanation
Indices: 6884086--6884449 Score: 398
Period size: 46 Copynumber: 7.8 Consensus size: 46
6884076 TTCACACCTT
* *
6884086 AAAGATTCTCATTT-GAAAAGTCTTAAAAATTCTCATTTGAGAAACGTC
1 AAAGATTCTCATTTGGAAATGTCTTAAAGATTCTCATTT-A-AAAC-TC
* * * *
6884134 TTAAAGATTCTCATTT---AA-GACTCAAAGATTCTCATATGAAAATGTCTT
1 --AAAGATTCTCATTTGGAAATGTCTTAAAGATTCTCAT-TTAAAA---CTC
*
6884182 AAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTC
1 AAAGATTCTCATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTC
** * *
6884228 AAAGATTCTCATTTGGAAACATCTTAAAGATTTTCATTTAAGACTC
1 AAAGATTCTCATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTC
* *
6884274 AAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTTAAGACTC
1 AAAGATTCTCATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTC
* * * *
6884320 AAAGATTCTCATTT-GAAAAGTCTTAAAGATTTTTATTTAAGACTC
1 AAAGATTCTCATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTC
** *
6884365 AAAGATTCTCATTTGGAAACATCTTAAAGATTCTTATTTAAAACTC
1 AAAGATTCTCATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTC
** *
6884411 AAAGATTCTCATTTCAAAATGTCTTAAAGATTTTCATTT
1 AAAGATTCTCATTTGGAAATGTCTTAAAGATTCTCATTT
6884450 GGAAATATTT
Statistics
Matches: 272, Mismatches: 33, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
45 42 0.15
46 174 0.64
47 15 0.06
48 4 0.01
49 8 0.03
50 29 0.11
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (46 bp):
AAAGATTCTCATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTC
Found at i:6884268 original size:117 final size:120
Alignment explanation
Indices: 6884083--6884756 Score: 369
Period size: 117 Copynumber: 5.9 Consensus size: 120
6884073 GGTTTCACAC
* *
6884083 CTTAAAGATTCTCATTTGAAAAGTCTTAAAAATTCTCATTTGAGAAACGTCTTAAAGATTCTCAT
1 CTTAAAGATTCTCATTTGAAAAG-CTCAAAAATTCTCATTTGAGAAACATCTTAAAGATTCTCAT
*
6884148 TTAAGACTCAAAGATTCTCATATGAAAATGTCTTAAAGATTCTTATTTGGAAATGT
65 TTAAGACTCAAAGATTCTCATATGAAAATGTCTTAAAGATTCTCATTTGGAAATGT
* *
6884204 CTTAAAGATTCTCATTT-AAAA-CTCAAAGATTCTCATTTG-GAAACATCTTAAAGATTTTCATT
1 CTTAAAGATTCTCATTTGAAAAGCTCAAAAATTCTCATTTGAGAAACATCTTAAAGATTCTCATT
* * * *
6884266 TAAGACTCAAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTT---AA-GA
66 TAAGACTCAAAGATTCTCATATGAAAATGTCTTAAAGATTCTCATTTGGAAATGT
* * * * * *
6884317 CTCAAAGATTCTCATTTGAAAAGTCTTAAAGATTTTTATTT-A-AGAC-TC--AAAGATTCTCAT
1 CTTAAAGATTCTCATTTGAAAAG-CTCAAAAATTCTCATTTGAGAAACATCTTAAAGATTCTCAT
* * * **
6884377 TTGGAA-ACATCTTAAAGATTCTTAT-TTAAAA---CTCAAAGATTCTCATTTCAAAATGT
65 TT--AAGAC-TC--AAAGATTCTCATATGAAAATGTCTTAAAGATTCTCATTTGGAAATGT
* ** * * * * *
6884433 CTTAAAGATTTTCATTTGGAAATATTTTAAAGATTCTTATTT-A-AGAC-TC--AAAGAATCTCA
1 CTTAAAGATTCTCATTT-GAAA-AGCTCAAAAATTCTCATTTGAGAAACATCTTAAAGATTCTCA
* * * * * * ** * * **
6884493 TTTGAAAACATTTTAAATACTCTCAT-T--TAA-GACACAAA-ACTTCTTATTTGAAAACAT
64 TTT-AAGAC---TCAAAGATTCTCATATGAAAATGTCTTAAAGA-TTCTCATTTGGAAATGT
* * * *
6884550 TTTAAAGATTCTCATCT-AAGA-CTCAAAGATTCTCATTTGA-AAACATCTTAAAGATTCTCATT
1 CTTAAAGATTCTCATTTGAAAAGCTCAAAAATTCTCATTTGAGAAACATCTTAAAGATTCTCATT
*
6884612 TAAGACTCAAAG--------AT-AAAATGTCTTAAAGATTCTCATTT---AA-GA
66 TAAGACTCAAAGATTCTCATATGAAAATGTCTTAAAGATTCTCATTTGGAAATGT
* *
6884654 CTCAAAGATTCTCATTTGAAAA-CATCTTAAAGATTCTCATTT-----A-A----AAA-ATTCTC
1 CTTAAAGATTCTCATTTGAAAAGC-TC--AAAAATTCTCATTTGAGAAACATCTTAAAGATTCTC
* *
6884707 ATTTAAGACTCAAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTT
63 ATTTAAGACTCAAAGATTCTCATATGAAAATGTCTTAAAGATTCTCATTT
6884757 AAGACTCAAA
Statistics
Matches: 450, Mismatches: 61, Indels: 98
0.74 0.10 0.16
Matches are distributed among these distances:
98 21 0.05
99 3 0.01
103 1 0.00
104 15 0.03
105 6 0.01
106 4 0.01
107 25 0.06
108 27 0.06
109 1 0.00
112 29 0.06
113 37 0.08
114 17 0.04
115 15 0.03
116 50 0.11
117 160 0.36
118 17 0.04
119 1 0.00
120 4 0.01
121 17 0.04
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (120 bp):
CTTAAAGATTCTCATTTGAAAAGCTCAAAAATTCTCATTTGAGAAACATCTTAAAGATTCTCATT
TAAGACTCAAAGATTCTCATATGAAAATGTCTTAAAGATTCTCATTTGGAAATGT
Done.