Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 54 of 93
Found at i:6884369 original size:137 final size:138
Alignment explanation
Indices: 6884182--6884449 Score: 423
Period size: 137 Copynumber: 1.9 Consensus size: 138
6884172 AAAATGTCTT
* *
6884182 AAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGGAAA
1 AAAGATTCTCATTTGGAAAAGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGGAAA
* * **
6884247 CATCTTAAAGATT-TTCATTTAAGACTCAAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCAT
66 CATCTTAAAGATTCTT-ATTTAAAACTCAAAGATTCTCATTTCAAAATGTCTTAAAGATTCTCAT
6884311 TTAAGACTC
130 TTAAGACTC
* * *
6884320 AAAGATTCTCATTT-GAAAAGTCTTAAAGATTTTTATTTAAGACTCAAAGATTCTCATTTGGAAA
1 AAAGATTCTCATTTGGAAAAGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGGAAA
*
6884384 CATCTTAAAGATTCTTATTTAAAACTCAAAGATTCTCATTTCAAAATGTCTTAAAGATTTTCATT
66 CATCTTAAAGATTCTTATTTAAAACTCAAAGATTCTCATTTCAAAATGTCTTAAAGATTCTCATT
6884449 T
131 T
6884450 GGAAATATTT
Statistics
Matches: 119, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
137 104 0.87
138 15 0.13
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.39
Consensus pattern (138 bp):
AAAGATTCTCATTTGGAAAAGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGGAAA
CATCTTAAAGATTCTTATTTAAAACTCAAAGATTCTCATTTCAAAATGTCTTAAAGATTCTCATT
TAAGACTC
Found at i:6884404 original size:91 final size:91
Alignment explanation
Indices: 6884086--6884449 Score: 441
Period size: 92 Copynumber: 3.9 Consensus size: 91
6884076 TTCACACCTT
* * *
6884086 AAAGATTCTCATTT-GAAAAGTCTTAAAAATTCTCATTTGAGAAACGTCTTAAAGATTCTCATTT
1 AAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTT-A-AAAC-TC--AAAGATTCTCATTT
* * * * * *
6884150 ---AAGACTCAAAGATTCTCATATGAAAATGTCTT
61 GAAAAGTCTTAAAGATTTTCAT-T--TAA-GACTC
6884182 AAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGGAAA
1 AAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTT-GAAA
6884247 CA-TCTTAAAGATTTTCATTTAAGACTC
65 -AGTCTTAAAGATTTTCATTTAAGACTC
*
6884274 AAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAA
1 AAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAAA
*
6884339 GTCTTAAAGATTTTTATTTAAGACTC
66 GTCTTAAAGATTTTCATTTAAGACTC
* ** * *
6884365 AAAGATTCTCATTTGGAAACATCTTAAAGATTCTTATTTAAAACTCAAAGATTCTCATTTCAAAA
1 AAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAAA
6884430 TGTCTTAAAGATTTTCATTT
66 -GTCTTAAAGATTTTCATTT
6884450 GGAAATATTT
Statistics
Matches: 242, Mismatches: 18, Indels: 20
0.86 0.06 0.07
Matches are distributed among these distances:
90 1 0.00
91 87 0.36
92 94 0.39
93 2 0.01
94 2 0.01
95 5 0.02
96 28 0.12
97 23 0.10
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (91 bp):
AAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAAA
GTCTTAAAGATTTTCATTTAAGACTC
Found at i:6884418 original size:254 final size:253
Alignment explanation
Indices: 6884187--6884697 Score: 398
Period size: 254 Copynumber: 2.0 Consensus size: 253
6884177 GTCTTAAAGA
* ** * * *
6884187 TTCTTATTTGGAAATGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGGAAACATCT
1 TTCTTATTTGAAAACATCTTAAAGATTCTCATCTAAGACTCAAAGATTCTCATTTGAAAACATCT
* * *
6884252 TAAAGATTTTCATTTAAGACTCAAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTTAAGA
66 TAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGGAAACGTCTTAAAGATTCTCATTTAAGA
* * *
6884317 CTCAAAGATTCTCATTTGAAAA-GTCTTAAAGATTTTTATTT--AAGA-CTCAAAGATTCTCATT
131 CTCAAAGATTCTCATTTGAAAATGTCTTAAAGATTCTTATTTGGAA-ATTTTAAAGATTCTCATT
* * *
6884378 TGGAA-ACATCTTAAAGATTCTTATTT-AAAAC-TC--AAAGATTCTCATTTCAAAATGTCTTAA
195 T--AAGAC-TC--AAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTT---AA-GACTCAA
6884438 AGA-
251 A-AC
* * * * * * *
6884441 TT-TTCATTTGGAAATATTTTAAAGATTCTTATTTAAGACTCAAAGAATCTCATTTGAAAACATT
1 TTCTT-ATTTGAAAACATCTTAAAGATTCTCATCTAAGACTCAAAGATTCTCATTTGAAAACATC
* * * * * * * *
6884505 TTAAATACTCTCATTTAAGACACAAA-ACTTCTTATTTGAAAACATTTTAAAGATTCTCATCTAA
65 TTAAAGATTCTCATTTAAGACTCAAAGA-TTCTCATTTGGAAACGTCTTAAAGATTCTCATTTAA
** *
6884569 GACTCAAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTTAAGACTCAAAGATAAAATGTC
129 GACTCAAAGATTCTCATTTGAAAATGTCTTAAAGATTCTTATTT--G-------G---AAAT-T-
6884634 TTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTTAA
180 TTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTTAA
6884698 AAAATTCTCA
Statistics
Matches: 210, Mismatches: 22, Indels: 36
0.78 0.08 0.13
Matches are distributed among these distances:
253 3 0.01
254 131 0.62
255 16 0.08
267 13 0.06
268 8 0.04
269 8 0.04
270 2 0.01
271 29 0.14
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.38
Consensus pattern (253 bp):
TTCTTATTTGAAAACATCTTAAAGATTCTCATCTAAGACTCAAAGATTCTCATTTGAAAACATCT
TAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGGAAACGTCTTAAAGATTCTCATTTAAGA
CTCAAAGATTCTCATTTGAAAATGTCTTAAAGATTCTTATTTGGAAATTTTAAAGATTCTCATTT
AAGACTCAAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTTAAGACTCAAAAC
Found at i:6884486 original size:46 final size:46
Alignment explanation
Indices: 6884083--6884697 Score: 385
Period size: 46 Copynumber: 13.4 Consensus size: 46
6884073 GGTTTCACAC
* * * *
6884083 CTTAAAGATTCTCATTTGAAAAGTCTTAAAAATTCTCATTTGAGAAACGT
1 CTTAAAGATTCTCATTT---AAGACTCAAAGATTCTCATTTGA-AAACAT
* **
6884133 CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATATGAAAATGT
1 CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACAT
* * *
6884179 CTTAAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTT-AAAAC-T
1 CTTAAAGATTCTCATTT---AA-GACTCAAAGATTCTCATTTGAAAACAT
* *
6884227 C--AAAGATTCTCATTTGGAA-ACATCTTAAAGATTTTCATTT-AAGAC-T
1 CTTAAAGATTCTCATTT--AAGAC-TC--AAAGATTCTCATTTGAAAACAT
* * * *
6884273 C--AAAGATTCTTATTTGGAAATGTCTTAAAGATTCTCATTT-AAGAC-T
1 CTTAAAGATTCTCATTT---AA-GACTCAAAGATTCTCATTTGAAAACAT
* * * * *
6884319 C--AAAGATTCTCATTTGAAAAGTCTTAAAGATTTTTATTT-AAGAC-T
1 CTTAAAGATTCTCATTT---AAGACTCAAAGATTCTCATTTGAAAACAT
*
6884364 C--AAAGATTCTCATTTGGAA-ACATCTTAAAGATTCTTATTT-AAAAC-T
1 CTTAAAGATTCTCATTT--AAGAC-TC--AAAGATTCTCATTTGAAAACAT
* * * * *
6884410 C--AAAGATTCTCATTTCAAAATGTCTTAAAGATTTTCATTTGGAAATAT
1 CTTAAAGATTCTCATTT---AA-GACTCAAAGATTCTCATTTGAAAACAT
* * *
6884458 TTTAAAGATTCTTATTTAAGACTCAAAGAATCTCATTTGAAAACAT
1 CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACAT
* * * * *
6884504 TTTAAATACTCTCATTTAAGACACAAA-ACTTCTTATTTGAAAACAT
1 CTTAAAGATTCTCATTTAAGACTCAAAGA-TTCTCATTTGAAAACAT
* *
6884550 TTTAAAGATTCTCATCTAAGACTCAAAGATTCTCATTTGAAAACAT
1 CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACAT
**
6884596 CTTAAAGATTCTCATTTAAGACTCAAAG------A--T-AAAATGT
1 CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACAT
6884633 CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACAT
1 CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACAT
6884679 CTTAAAGATTCTCATTTAA
1 CTTAAAGATTCTCATTTAA
6884698 AAAATTCTCA
Statistics
Matches: 470, Mismatches: 64, Indels: 66
0.78 0.11 0.11
Matches are distributed among these distances:
37 33 0.07
38 1 0.00
40 1 0.00
43 3 0.01
44 4 0.01
45 43 0.09
46 296 0.63
47 30 0.06
48 5 0.01
49 8 0.02
50 46 0.10
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (46 bp):
CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACAT
Found at i:6884700 original size:25 final size:23
Alignment explanation
Indices: 6884632--6884699 Score: 95
Period size: 21 Copynumber: 3.0 Consensus size: 23
6884622 AGATAAAATG
*
6884632 TCTTAAAGATTCTCATTTAAGAC
1 TCTTAAAGATTCTCATTTAAAAC
6884655 TC--AAAGATTCTCATTTGAAAAC
1 TCTTAAAGATTCTCATTT-AAAAC
6884677 ATCTTAAAGATTCTCATTTAAAA
1 -TCTTAAAGATTCTCATTTAAAA
6884700 AATTCTCATT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
21 14 0.35
22 4 0.10
23 4 0.10
24 4 0.10
25 14 0.35
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (23 bp):
TCTTAAAGATTCTCATTTAAAAC
Found at i:6884714 original size:61 final size:61
Alignment explanation
Indices: 6884640--6884758 Score: 229
Period size: 61 Copynumber: 2.0 Consensus size: 61
6884630 TGTCTTAAAG
6884640 ATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTTAAAAA
1 ATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTTAAAAA
*
6884701 ATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAA
1 ATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTTAA
6884759 GACTCAAAAC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.37
Consensus pattern (61 bp):
ATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTTAAAAA
Found at i:6886030 original size:19 final size:19
Alignment explanation
Indices: 6886008--6886064 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 19
6885998 AATTTAAGTC
*
6886008 TTTTTTTTCTTTTCATCTTT
1 TTTTTTTT-TTTTCATCTTA
6886028 TTTTTTCATTTTTTC-TCTTA
1 TTTTTT--TTTTTTCATCTTA
6886048 TTTTTTATTTTTTCATC
1 TTTTTT-TTTTTTCATC
6886065 CATTTTCCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 8 0.24
20 18 0.55
21 5 0.15
22 2 0.06
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTTTTTTTTCATCTTA
Found at i:6886033 original size:13 final size:13
Alignment explanation
Indices: 6886010--6886058 Score: 57
Period size: 12 Copynumber: 3.8 Consensus size: 13
6886000 TTTAAGTCTT
6886010 TTTTTTCTTTTCA
1 TTTTTTCTTTTCA
6886023 TCTTTTT-TTTTCA
1 T-TTTTTCTTTTCA
*
6886036 TTTTTTCTCTT-A
1 TTTTTTCTTTTCA
*
6886048 TTTTTTATTTT
1 TTTTTTCTTTT
6886059 TTCATCCATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 15 0.48
13 11 0.35
14 5 0.16
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTTCTTTTCA
Found at i:6886033 original size:20 final size:20
Alignment explanation
Indices: 6886008--6886064 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
6885998 AATTTAAGTC
*
6886008 TTTTTTTTCTTTTCATCTT-
1 TTTTTTTTTTTTTCATCTTA
6886027 TTTTTTTCATTTTTTC-TCTTA
1 TTTTTTT--TTTTTTCATCTTA
*
6886048 TTTTTTATTTTTTCATC
1 TTTTTTTTTTTTTCATC
6886065 CATTTTCCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
19 14 0.44
20 6 0.19
21 12 0.38
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTTTTTTTTTCATCTTA
Found at i:6886069 original size:19 final size:20
Alignment explanation
Indices: 6886028--6886070 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
6886018 TTTCATCTTT
*
6886028 TTTTTTCATTTTTTCTCTTA
1 TTTTTTCATTTTTTCTCTCA
6886048 TTTTTT-ATTTTTTCATC-CA
1 TTTTTTCATTTTTTC-TCTCA
6886067 TTTT
1 TTTT
6886071 CCTTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTTCATTTTTTCTCTCA
Found at i:6886070 original size:29 final size:28
Alignment explanation
Indices: 6886038--6886092 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
6886028 TTTTTTCATT
6886038 TTTTCTCTTATTTTTTAT-TTTTTCATCCA
1 TTTTC-CTT-TTTTTTATCTTTTTCATCCA
*
6886067 TTTTCCTTTTTTTTTTCTTTTTCATC
1 TTTTCCTTTTTTTTATCTTTTTCATC
6886093 TTTTTTCATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 7 0.29
28 12 0.50
29 5 0.21
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (28 bp):
TTTTCCTTTTTTTTATCTTTTTCATCCA
Found at i:6886098 original size:28 final size:29
Alignment explanation
Indices: 6886025--6886099 Score: 86
Period size: 27 Copynumber: 2.7 Consensus size: 29
6886015 TCTTTTCATC
6886025 TTTTTTTTTCA--TTTTTTCTCTTATTTT
1 TTTTTTTTTCATCTTTTTTCTCTTATTTT
* **
6886052 TTATTTTTTCATCCATTTTC-CTT-TTTT
1 TTTTTTTTTCATCTTTTTTCTCTTATTTT
6886079 TTTTCTTTTTCATCTTTTTTC
1 TTTT-TTTTTCATCTTTTTTC
6886100 ATCCATTGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
27 17 0.44
28 17 0.44
29 5 0.13
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (29 bp):
TTTTTTTTTCATCTTTTTTCTCTTATTTT
Found at i:6886471 original size:10 final size:10
Alignment explanation
Indices: 6886456--6886510 Score: 55
Period size: 9 Copynumber: 5.9 Consensus size: 10
6886446 GTGACATTCA
6886456 TTTCTCTTTT
1 TTTCTCTTTT
6886466 TTTCTC-TTT
1 TTTCTCTTTT
*
6886475 TTTCT-TTGT
1 TTTCTCTTTT
*
6886484 TTTGT-TTTT
1 TTTCTCTTTT
*
6886493 TTTTTCTTTT
1 TTTCTCTTTT
6886503 TTT-TCTTT
1 TTTCTCTTT
6886511 CTATCTTTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
9 26 0.67
10 13 0.33
ACGTcount: A:0.00, C:0.13, G:0.04, T:0.84
Consensus pattern (10 bp):
TTTCTCTTTT
Found at i:6889294 original size:148 final size:150
Alignment explanation
Indices: 6889024--6889324 Score: 516
Period size: 148 Copynumber: 2.0 Consensus size: 150
6889014 ATGCAGATGC
* *
6889024 ATAATGTTACATATGATAATGAAATTGATGCATAAAGTCAGACAATCAAAATGGTTAGATAAACA
1 ATAATGTTAAATATGATAATGAAATTGATGCACAAAGTCAGACAATCAAAATGGTTAGATAAACA
* *
6889089 CCCTTCTTGTGTCCTAATTTTAGGGTATATCTATCATTGGATAGGAAGGGCTTTATCTTAGGGTT
66 CCCTTCTTGTGTCCTAATTTCAGGGTATATCTATCATTGGATAGGAAGGGCTCTATCTTAGGGTT
*
6889154 AGGCACTTCTAAGGTTTACT
131 AGGCACTTCTAAGATTTACT
*
6889174 ATAATGTTAAATATGATAATGAAA-TGATGCACAAAGTCAGACAATTAAAATGGTTAGATAAACA
1 ATAATGTTAAATATGATAATGAAATTGATGCACAAAGTCAGACAATCAAAATGGTTAGATAAACA
*
6889238 CCCTT-TTGTGTCCTAATTTCAGGGTATATCTATCATTGGGTAGGAAGGGCTCTATCTTAGGGTT
66 CCCTTCTTGTGTCCTAATTTCAGGGTATATCTATCATTGGATAGGAAGGGCTCTATCTTAGGGTT
*
6889302 AGGCACTTTTAAGATTTACT
131 AGGCACTTCTAAGATTTACT
6889322 ATA
1 ATA
6889325 TGTGGTTTAA
Statistics
Matches: 143, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
148 77 0.54
149 43 0.30
150 23 0.16
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (150 bp):
ATAATGTTAAATATGATAATGAAATTGATGCACAAAGTCAGACAATCAAAATGGTTAGATAAACA
CCCTTCTTGTGTCCTAATTTCAGGGTATATCTATCATTGGATAGGAAGGGCTCTATCTTAGGGTT
AGGCACTTCTAAGATTTACT
Found at i:6890383 original size:15 final size:15
Alignment explanation
Indices: 6890349--6890381 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
6890339 CCCAAAATAC
6890349 TTTTAGAAATTTTTA
1 TTTTAGAAATTTTTA
6890364 TTTTAGAAA-TTTTA
1 TTTTAGAAATTTTTA
6890378 TTTT
1 TTTT
6890382 TAAGAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (15 bp):
TTTTAGAAATTTTTA
Found at i:6890491 original size:6 final size:6
Alignment explanation
Indices: 6890461--6890511 Score: 58
Period size: 6 Copynumber: 9.3 Consensus size: 6
6890451 ATTAAAAAGA
*
6890461 AAAATT -AAATT -AAATT -AAGTT AAAATT AAAATT AAAATT AAAA--
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
6890504 AAAATT AA
1 AAAATT AA
6890512 GGAATACCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
4 4 0.10
5 14 0.35
6 22 0.55
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:6890507 original size:22 final size:22
Alignment explanation
Indices: 6890460--6890511 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
6890450 CATTAAAAAG
*
6890460 AAAAATT-AAATTAAATTAAGT
1 AAAAATTAAAATTAAATTAAGA
*
6890481 TAAAATTAAAATTAAAATTAA-A
1 AAAAATTAAAATT-AAATTAAGA
6890503 AAAAATTAA
1 AAAAATTAA
6890512 GGAATACCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 6 0.23
22 13 0.50
23 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAAATTAAAATTAAATTAAGA
Found at i:6893444 original size:37 final size:38
Alignment explanation
Indices: 6893403--6893475 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
6893393 AATTCCTATG
*
6893403 AAAATACCAA-AAAAATAAAATAAAATGAA-TAAAAAGC
1 AAAATACCAACAAAAATAAAACAAAAT-AATTAAAAAGC
* *
6893440 AAAATAGCAACAAAAATAGAACAAAATAATTAAAAA
1 AAAATACCAACAAAAATAAAACAAAATAATTAAAAA
6893476 ATAAACATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 11 0.35
38 20 0.65
ACGTcount: A:0.73, C:0.08, G:0.05, T:0.14
Consensus pattern (38 bp):
AAAATACCAACAAAAATAAAACAAAATAATTAAAAAGC
Found at i:6895033 original size:2 final size:2
Alignment explanation
Indices: 6895026--6895055 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6895016 CTATACCTAT
6895026 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6895056 AAAGCATGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6897934 original size:119 final size:119
Alignment explanation
Indices: 6897790--6898022 Score: 362
Period size: 119 Copynumber: 2.0 Consensus size: 119
6897780 TAAAAATGTT
*
6897790 TTTTCTTTTCAAGAAAAATTGATACTTCCAACTTTTCCTAAAAAATGTTTTTTTTTTTAAGTTTT
1 TTTTATTTTCAAGAAAAATTGATACTTCCAACTTTTCCTAAAAAATGTTTTTTTTTTTAAGTTTT
* *
6897855 A-TTTCAAGGAAAATTGATACTTTCAACT-TATCCTTAAAAATATTTTTTGAAAA
66 ATTTTCAAGAAAAATTGATACTTTCAACTGT-TCCTCAAAAATATTTTTTGAAAA
* * * *
6897908 TTTTATTTTCAAGGAAAAATTGATACTTTCAGCTTTTCCTTAAAAATGTTTTTTTTTTTAATTTT
1 TTTTATTTTCAA-GAAAAATTGATACTTCCAACTTTTCCTAAAAAATGTTTTTTTTTTTAAGTTT
*
6897973 TATTTTCAAGAAAAATTGATACTTTCAACTGTTCCTCAAAAATGTTTTTT
65 TATTTTCAAGAAAAATTGATACTTTCAACTGTTCCTCAAAAATATTTTTT
6898023 TTTTTGAAAT
Statistics
Matches: 104, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
118 11 0.11
119 50 0.48
120 42 0.40
121 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.48
Consensus pattern (119 bp):
TTTTATTTTCAAGAAAAATTGATACTTCCAACTTTTCCTAAAAAATGTTTTTTTTTTTAAGTTTT
ATTTTCAAGAAAAATTGATACTTTCAACTGTTCCTCAAAAATATTTTTTGAAAA
Found at i:6897992 original size:61 final size:61
Alignment explanation
Indices: 6897789--6898042 Score: 327
Period size: 61 Copynumber: 4.2 Consensus size: 61
6897779 TTAAAAATGT
* * *
6897789 TTTTTCTTTTCAAGAAAAATTGATACTTCCAACTTTTCCTAAAAAATGTTTTTTTTTTTAA
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTTAA
* * * * **
6897850 GTTTTA-TTTCAAGGAAAATTGATACTTTCAACTTATCCTTAAAAA---TATTTTTTGAAA
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTTAA
* *
6897907 ATTTTATTTTCAAGGAAAAATTGATACTTTCAGCTTTTCCTTAAAAATGTTTTTTTTTTTAA
1 TTTTTATTTTCAA-GAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTTAA
* *
6897969 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTGTTCCTCAAAAATGTTTTTTTTTTTGAAA
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTT--AA
6898032 TTTTTAATTTT
1 TTTTT-ATTTT
6898043 TATTCAAAGA
Statistics
Matches: 165, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
57 14 0.08
58 6 0.04
59 30 0.18
60 35 0.21
61 47 0.28
62 21 0.13
63 7 0.04
64 5 0.03
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.50
Consensus pattern (61 bp):
TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTTAA
Found at i:6899813 original size:44 final size:44
Alignment explanation
Indices: 6899722--6899808 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
6899712 TTCTTATTCG
* * *
6899722 AGTTCAAAAGTTCACATTCAAGAAATCTTAGAGTTTCACGTCCA
1 AGTTCAAAAGTTCACACTCAAGAAATCTTAGAGATTCACATCCA
* * *
6899766 AGTTCAAAGGTTCTCACTCAA-AAAT-TTAGAGATTCATATCCA
1 AGTTCAAAAGTTCACACTCAAGAAATCTTAGAGATTCACATCCA
6899808 A
1 A
6899809 AAGTTGAGTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
42 15 0.41
43 4 0.11
44 18 0.49
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.30
Consensus pattern (44 bp):
AGTTCAAAAGTTCACACTCAAGAAATCTTAGAGATTCACATCCA
Found at i:6899931 original size:59 final size:58
Alignment explanation
Indices: 6899861--6900003 Score: 153
Period size: 59 Copynumber: 2.4 Consensus size: 58
6899851 ATCGAAAAGT
* * *
6899861 TCAAAGCTTCTCATTCT-AGTTCAAAGATTCACATCCCACGAACTTTAGGGTTTCACATC
1 TCAAAGATTCTCATT-TAAGTTCAAAGATTCACATCCCAC-AAATTTAGGGTTTCACACC
* * * * * * *
6899920 TCAAATATTCTCATTTAAGTTCGAAGATTCATATTCGACAAATTTTGGGTTTCTCACC
1 TCAAAGATTCTCATTTAAGTTCAAAGATTCACATCCCACAAATTTAGGGTTTCACACC
*
6899978 TCAAAGATTCTCATTTGAAATTCAAA
1 TCAAAGATTCTCATTT-AAGTTCAAA
6900004 ACTCAAAGAT
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
58 31 0.45
59 38 0.55
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (58 bp):
TCAAAGATTCTCATTTAAGTTCAAAGATTCACATCCCACAAATTTAGGGTTTCACACC
Found at i:6899991 original size:58 final size:58
Alignment explanation
Indices: 6899861--6899993 Score: 151
Period size: 58 Copynumber: 2.3 Consensus size: 58
6899851 ATCGAAAAGT
* * *
6899861 TCAAAGCTTCTCATTCTAGTTCAAAGATTCACATCCCACGAACTTTAGGGTTTCACATC
1 TCAAAGATTCTCATT-TAGTTCAAAGATTCACATCCCACGAAATTTAGGGTTTCACACC
* * * * * * *
6899920 TCAAATATTCTCATTTAAGTTCGAAGATTCATATTCGAC-AAATTTTGGGTTTCTCACC
1 TCAAAGATTCTCATTT-AGTTCAAAGATTCACATCCCACGAAATTTAGGGTTTCACACC
6899978 TCAAAGATTCTCATTT
1 TCAAAGATTCTCATTT
6899994 GAAATTCAAA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
58 31 0.50
59 31 0.50
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (58 bp):
TCAAAGATTCTCATTTAGTTCAAAGATTCACATCCCACGAAATTTAGGGTTTCACACC
Found at i:6900126 original size:67 final size:65
Alignment explanation
Indices: 6900022--6900236 Score: 206
Period size: 67 Copynumber: 3.2 Consensus size: 65
6900012 ATTCTCATTA
*
6900022 ATTCTCATTTGAAATTTAAAAATTCTCATTTAAAACTCAAAGATTCTTATTTGA-AATTC-AAAG
1 ATTCTCATTTGAAATTTAAAAATTCTCATTTAAAACTCAAAGATTCTCATTTGAGAATTCTAAAG
* * *
6900085 ATTCTCATTTGAAAACTTTTTAAAAATTCTCGTTTAAAACTCAAAGTTTCTCATTTGAGGATTTC
1 ATTCTCATTTG-AAA---TTTAAAAATTCTCATTTAAAACTCAAAGATTCTCATTTGA-GAATTC
6900150 TTAAAG
61 -TAAAG
* * * * *
6900156 ATTCTCATTT-AAGACTCAAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAG-A-CC
1 ATTCTCATTTGAA-ATTTAAAAATTCTCATTT-AAAAC-TC--AAAGATTCTCATTTGAGAATTC
6900218 TAAAG
61 TAAAG
*
6900223 ATTCACATTTGAAA
1 ATTCTCATTTGAAA
6900237 ACATCTTAAA
Statistics
Matches: 125, Mismatches: 13, Indels: 24
0.77 0.08 0.15
Matches are distributed among these distances:
63 11 0.09
64 3 0.02
67 65 0.52
68 8 0.06
69 8 0.06
70 2 0.02
71 28 0.22
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.39
Consensus pattern (65 bp):
ATTCTCATTTGAAATTTAAAAATTCTCATTTAAAACTCAAAGATTCTCATTTGAGAATTCTAAAG
Found at i:6900129 original size:46 final size:46
Alignment explanation
Indices: 6900060--6900250 Score: 217
Period size: 46 Copynumber: 4.2 Consensus size: 46
6900050 TTTAAAACTC
* *
6900060 AAAGATTCTTATTTGAA-ATTCAAAGATTCTCATTTGAAAACTTTTT
1 AAAGATTCTCATTT-AAGACTCAAAGATTCTCATTTGAAAACTTTTT
* * * * **
6900106 AAAAATTCTCGTTTAAAACTCAAAGTTTCTCATTTGAGGA-TTTCTT
1 AAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACTTT-TT
* *
6900152 AAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACGTCTT
1 AAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACTTTTT
* * *
6900198 AAAGATTCTCATTTAAGAC-CTAAAGATTCACATTTGAAAACATCTT
1 AAAGATTCTCATTTAAGACTC-AAAGATTCTCATTTGAAAACTTTTT
6900244 AAAGATT
1 AAAGATT
6900251 GAGACTCAAA
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
45 6 0.05
46 117 0.94
47 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (46 bp):
AAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAAAACTTTTT
Found at i:6900161 original size:25 final size:23
Alignment explanation
Indices: 6900022--6900250 Score: 140
Period size: 21 Copynumber: 10.1 Consensus size: 23
6900012 ATTCTCATTA
*
6900022 ATTCTCATTTGAA-AT-TTAAAA
1 ATTCTCATTTGAAGATCTTAAAG
* *
6900043 ATTCTCATTT-AA-AACTCAAAG
1 ATTCTCATTTGAAGATCTTAAAG
* *
6900064 ATTCTTATTTGAA-AT-TCAAAG
1 ATTCTCATTTGAAGATCTTAAAG
* * *
6900085 ATTCTCATTTGAAAACTTTTTAAAA
1 ATTCTCATTTGAAGA--TCTTAAAG
* * *
6900110 ATTCTCGTTT-AA-AACTCAAAG
1 ATTCTCATTTGAAGATCTTAAAG
* *
6900131 TTTCTCATTTGAGGATTTCTTAAAG
1 ATTCTCATTTGAAGA--TCTTAAAG
*
6900156 ATTCTCATTT-AAGA-CTCAAAG
1 ATTCTCATTTGAAGATCTTAAAG
*
6900177 ATTCTCATTTGAAAACGTCTTAAAG
1 ATTCTCATTTGAAGA--TCTTAAAG
*
6900202 ATTCTCATTT-AAGA-CCTAAAG
1 ATTCTCATTTGAAGATCTTAAAG
* *
6900223 ATTCACATTTGAAAACATCTTAAAG
1 ATTCTCATTTG--AAGATCTTAAAG
6900248 ATT
1 ATT
6900251 GAGACTCAAA
Statistics
Matches: 162, Mismatches: 28, Indels: 32
0.73 0.13 0.14
Matches are distributed among these distances:
20 3 0.02
21 84 0.52
22 8 0.05
23 2 0.01
24 12 0.07
25 53 0.33
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (23 bp):
ATTCTCATTTGAAGATCTTAAAG
Found at i:6900244 original size:92 final size:92
Alignment explanation
Indices: 6900021--6900250 Score: 238
Period size: 92 Copynumber: 2.5 Consensus size: 92
6900011 GATTCTCATT
* * * * * * *
6900021 AATTCTCATTTGAAATTTAAAAATTCTCATTT-AAAAC-TC--AAAGATTCTTATTTGAAATTCA
1 AATTCTCATTTAAAACTCAAAGATTCACATTTGAAAACATCTTAAAGATTCTCATTTGAAACTCA
* *
6900082 AAGATTCTCATTTGAAAACTTTTTAAA
66 AAGATTCTCATTTGAAAACGTCTTAAA
* * * ** **
6900109 AATTCTCGTTTAAAACTCAAAGTTTCTCATTTGAGGATTTCTTAAAGATTCTCATTT-AAGACTC
1 AATTCTCATTTAAAACTCAAAGATTCACATTTGAAAACATCTTAAAGATTCTCATTTGAA-ACTC
6900173 AAAGATTCTCATTTGAAAACGTCTTAAA
65 AAAGATTCTCATTTGAAAACGTCTTAAA
* *
6900201 GATTCTCATTTAAGAC-CTAAAGATTCACATTTGAAAACATCTTAAAGATT
1 AATTCTCATTTAAAACTC-AAAGATTCACATTTGAAAACATCTTAAAGATT
6900251 GAGACTCAAA
Statistics
Matches: 114, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
88 26 0.23
89 2 0.02
90 2 0.02
91 3 0.03
92 81 0.71
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (92 bp):
AATTCTCATTTAAAACTCAAAGATTCACATTTGAAAACATCTTAAAGATTCTCATTTGAAACTCA
AAGATTCTCATTTGAAAACGTCTTAAA
Found at i:6901536 original size:24 final size:24
Alignment explanation
Indices: 6901509--6901580 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
6901499 TTTTCCATTC
*
6901509 TTTCATCTTTCTCTTTTTTTTTTT
1 TTTCATCTTTCTCTTTTTTTTCTT
*
6901533 TTTCCTCTTTCT-TTTTTTTTCTT
1 TTTCATCTTTCTCTTTTTTTTCTT
* * *
6901556 TGTCTTTTTTCTCTTTTTTTTCTT
1 TTTCATCTTTCTCTTTTTTTTCTT
6901580 T
1 T
6901581 CCTTATTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 19 0.45
24 23 0.55
ACGTcount: A:0.01, C:0.18, G:0.01, T:0.79
Consensus pattern (24 bp):
TTTCATCTTTCTCTTTTTTTTCTT
Found at i:6901545 original size:35 final size:34
Alignment explanation
Indices: 6901476--6901565 Score: 93
Period size: 31 Copynumber: 2.8 Consensus size: 34
6901466 AACTTGAGTC
6901476 TTCATTTTCTCTTCTTTTCATTTTTTTCCATTCT
1 TTCATTTTCTCTTCTTTTCATTTTTTTCCATTCT
*
6901510 TTCATCTTTCTCTT-TTTT-TTTTTTTTCC--TCT
1 TTCAT-TTTCTCTTCTTTTCATTTTTTTCCATTCT
* *
6901541 TTC-TTTTTTTTTCTTTGTC-TTTTTT
1 TTCATTTTCTCTTCTTT-TCATTTTTT
6901566 CTCTTTTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
29 6 0.12
30 4 0.08
31 13 0.27
33 9 0.18
34 9 0.18
35 8 0.16
ACGTcount: A:0.04, C:0.20, G:0.01, T:0.74
Consensus pattern (34 bp):
TTCATTTTCTCTTCTTTTCATTTTTTTCCATTCT
Found at i:6901549 original size:14 final size:13
Alignment explanation
Indices: 6901509--6901606 Score: 53
Period size: 12 Copynumber: 7.4 Consensus size: 13
6901499 TTTTCCATTC
6901509 TTTCATCTTTCTCTT
1 TTTC-TCTTTCT-TT
6901524 TTT-T-TTT-TTT
1 TTTCTCTTTCTTT
*
6901534 TTCCTCTTTCTTTT
1 TTTCTCTTTC-TTT
*
6901548 TTTTTCTTTGTCTTT
1 TTTCTC-TT-TCTTT
6901563 TTTCTCTTT-TTT
1 TTTCTCTTTCTTT
* * *
6901575 TTCTTTCCTTATTT
1 TT-TCTCTTTCTTT
6901589 TTT-TCTTTCTCTT
1 TTTCTCTTTCT-TT
6901602 TTTCT
1 TTTCT
6901607 TTTTTTTCTC
Statistics
Matches: 65, Mismatches: 8, Indels: 21
0.69 0.09 0.22
Matches are distributed among these distances:
10 4 0.06
11 2 0.03
12 16 0.25
13 13 0.20
14 15 0.23
15 13 0.20
16 2 0.03
ACGTcount: A:0.02, C:0.19, G:0.01, T:0.78
Consensus pattern (13 bp):
TTTCTCTTTCTTT
Found at i:6901549 original size:16 final size:15
Alignment explanation
Indices: 6901525--6901611 Score: 76
Period size: 16 Copynumber: 5.7 Consensus size: 15
6901515 CTTTCTCTTT
6901525 TTTTTTTTTTTCCTC
1 TTTTTTTTTTTCCTC
6901540 TTTCTTTTTTTT--TC
1 TTT-TTTTTTTTCCTC
*
6901554 TTTGTCTTTTTT-CTC
1 TTT-TTTTTTTTCCTC
6901569 TTTTTTTTCTTTCCT-
1 TTTTTTTT-TTTCCTC
6901584 TATTTTTTTCTTT-CTC
1 T-TTTTTTT-TTTCCTC
6901600 TTTTTCTTTTTT
1 TTTTT-TTTTTT
6901612 TTCTCATCTT
Statistics
Matches: 62, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
14 16 0.26
15 21 0.34
16 25 0.40
ACGTcount: A:0.01, C:0.17, G:0.01, T:0.80
Consensus pattern (15 bp):
TTTTTTTTTTTCCTC
Found at i:6901563 original size:38 final size:39
Alignment explanation
Indices: 6901514--6901616 Score: 140
Period size: 38 Copynumber: 2.6 Consensus size: 39
6901504 CATTCTTTCA
6901514 TCTTTCTCTTTTTTTTTTTTTTCCTCTTT-CTT-TTTTTT
1 TCTTTCTCTTTTTTTTTTTTTT-CTCTTTCCTTATTTTTT
*
6901552 TCTTTGTCTTTTTTCTCTTTTTTT-TCTTTCCTTATTTTTT
1 TCTTTCTCTTTTTT-T-TTTTTTTCTCTTTCCTTATTTTTT
*
6901592 TCTTTCTCTTTTTCTTTTTTTTCTC
1 TCTTTCTCTTTTTTTTTTTTTTCTC
6901617 ATCTTTTCTC
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
38 25 0.44
39 7 0.12
40 25 0.44
ACGTcount: A:0.01, C:0.19, G:0.01, T:0.79
Consensus pattern (39 bp):
TCTTTCTCTTTTTTTTTTTTTTCTCTTTCCTTATTTTTT
Found at i:6901632 original size:61 final size:62
Alignment explanation
Indices: 6901514--6901682 Score: 172
Period size: 61 Copynumber: 2.8 Consensus size: 62
6901504 CATTCTTTCA
* * ** *
6901514 TCTTTCTCTTTTTTTTTTTTTTCCTCTTTCTTTTTTTTTCTTTGTCTTTTTTCTCTTTTTTT
1 TCTTTCTCTTATTTTTTTCTTTCCTCTTTCTTTTTTTTTCTTCATCTTTTCTCTCTTTTTTT
*
6901576 TCTTTC-CTTATTTTTTTCTTT-CTCTTTTTCTTTTTTTTC-TCATCTTTTCTCATCTTTTTTT
1 TCTTTCTCTTATTTTTTTCTTTCCTCTTTCT-TTTTTTTTCTTCATCTTTTCTC-TCTTTTTTT
* * * *
6901637 TCTTTTTTCTTATCTTTTTC-ATCCTC-ATC-TTTTTTTT-TTCATCTTT
1 TC-TTTCTCTTATTTTTTTCTTTCCTCTTTCTTTTTTTTTCTTCATCTTT
6901683 CACCTATTTT
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
60 32 0.36
61 33 0.37
62 11 0.12
63 14 0.16
ACGTcount: A:0.04, C:0.20, G:0.01, T:0.75
Consensus pattern (62 bp):
TCTTTCTCTTATTTTTTTCTTTCCTCTTTCTTTTTTTTTCTTCATCTTTTCTCTCTTTTTTT
Found at i:6901674 original size:31 final size:30
Alignment explanation
Indices: 6901537--6901676 Score: 124
Period size: 31 Copynumber: 4.6 Consensus size: 30
6901527 TTTTTTTTTC
* *
6901537 CTCTTTCTTTTTTTTTCTTTGTCTTTTT--T
1 CTCTTTTTTTTTTTTTC-TTATCTTTTTCAT
* * * *
6901566 CTCTTTTTTTTCTTTCCTTATTTTTTTCTTT
1 CTCTTTTTTTTTTTTTCTTATCTTTTTC-AT
*
6901597 CTCTTTTTCTTTTTTTTCTCATCTTTTCTCAT
1 CTCTTTTT-TTTTTTTTCTTATCTTTT-TCAT
6901629 CT-TTTTTTTCTTTTTTCTTATCTTTTTCAT
1 CTCTTTTTTT-TTTTTTCTTATCTTTTTCAT
* *
6901659 CCTCATCTTTTTTTTTTC
1 -CTCTTTTTTTTTTTTTC
6901677 ATCTTTCACC
Statistics
Matches: 90, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
28 8 0.09
29 14 0.16
30 6 0.07
31 38 0.42
32 22 0.24
33 2 0.02
ACGTcount: A:0.04, C:0.21, G:0.01, T:0.74
Consensus pattern (30 bp):
CTCTTTTTTTTTTTTTCTTATCTTTTTCAT
Found at i:6901692 original size:21 final size:20
Alignment explanation
Indices: 6901651--6901694 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
6901641 TTTTCTTATC
* *
6901651 TTTTTCATCCTCATCTTTTT
1 TTTTTCATCCTCACCTATTT
*
6901671 TTTTTCATCTTTCACCTATTT
1 TTTTTCATC-CTCACCTATTT
6901692 TTT
1 TTT
6901695 ATATCTCTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.11, C:0.23, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTTCATCCTCACCTATTT
Found at i:6902060 original size:17 final size:17
Alignment explanation
Indices: 6902035--6902069 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
6902025 ATGTGTGGCA
*
6902035 TTTTTCTTTCTTTTTTC
1 TTTTACTTTCTTTTTTC
*
6902052 TTTTACTTTTTTTTTTC
1 TTTTACTTTCTTTTTTC
6902069 T
1 T
6902070 CTTTCCATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTACTTTCTTTTTTC
Found at i:6904533 original size:93 final size:95
Alignment explanation
Indices: 6904405--6904590 Score: 295
Period size: 93 Copynumber: 2.0 Consensus size: 95
6904395 TATGTTGATG
** *
6904405 CATAGATGAAATATGAAACTGATGCAGATGCACGATGTTAAATATGATAATGATGTATGCAAATG
1 CATAGATGAAATATGAAACTGATGCAGATAAACGATGTTAAATATGACAATGATGTATGCAAATG
*
6904470 GACAAAGTCAAACAAACAAAATAGTTAGAT
66 CACAAAGTCAAACAAACAAAATAGTTAGAT
* **
6904500 CATAGATG-AA-ATGAAAGTGATGCAGATAAACGATGTTACTTATGACAATGATGTATGCAAATG
1 CATAGATGAAATATGAAACTGATGCAGATAAACGATGTTAAATATGACAATGATGTATGCAAATG
6904563 CACAAAGTCAAACAAACAAAATAGTTAG
66 CACAAAGTCAAACAAACAAAATAGTTAG
6904591 GTCACAAATT
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
93 74 0.88
94 2 0.02
95 8 0.10
ACGTcount: A:0.46, C:0.11, G:0.19, T:0.24
Consensus pattern (95 bp):
CATAGATGAAATATGAAACTGATGCAGATAAACGATGTTAAATATGACAATGATGTATGCAAATG
CACAAAGTCAAACAAACAAAATAGTTAGAT
Found at i:6905807 original size:59 final size:59
Alignment explanation
Indices: 6905587--6905808 Score: 216
Period size: 58 Copynumber: 3.8 Consensus size: 59
6905577 GCTTTAAAAT
* * * * ** ***
6905587 AAGAAAAATTCATACTTTCAACTTTTTCT-CAAAATGCTTTTTTGAAAATTTTATTTTC
1 AAGAAAAATTGATACTTTTAACTTTTCCTAAAAAATATTTTTTTTTTAATTTTATTTTC
** * *
6905645 AAGAAAAATTGATACTTCCAACTTTTCCTAAAAAATCTTTTTTTTTTAAGTTTTATTAT-
1 AAGAAAAATTGATACTTTTAACTTTTCCTAAAAAATATTTTTTTTTTAA-TTTTATTTTC
* * *
6905704 AAGAAAAATTGATACTTTTAACTTTTCCTTACAAATGTTTTTTTTTT-ATTTTATTTTC
1 AAGAAAAATTGATACTTTTAACTTTTCCTAAAAAATATTTTTTTTTTAATTTTATTTTC
* * * * * *
6905762 AAGGAAAATTGATATTTTTAACTTTTTCTCAAAAATATATATTTTTT
1 AAGAAAAATTGATACTTTTAACTTTTCCTAAAAAATATTTTTTTTTT
6905809 GAAATATTTA
Statistics
Matches: 137, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
57 8 0.06
58 66 0.48
59 55 0.40
60 8 0.06
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (59 bp):
AAGAAAAATTGATACTTTTAACTTTTCCTAAAAAATATTTTTTTTTTAATTTTATTTTC
Found at i:6905807 original size:117 final size:117
Alignment explanation
Indices: 6905585--6905808 Score: 279
Period size: 117 Copynumber: 1.9 Consensus size: 117
6905575 ATGCTTTAAA
*
6905585 ATAAGAAAAATTCATACTTTCAACTTTTTCTCAAAATGCTTTTTTGAAAATTTTATTTTCAAGAA
1 ATAAGAAAAATTCATACTTTCAACTTTTCCTCAAAATGCTTTTTTGAAAATTTTATTTTCAAGAA
* * *
6905650 AAATTGATACTTCCAACTTTTCCTAAAAAATCTTTTTTTTTTAAGTTTTATT
66 AAATTGATACTTCCAACTTTTCCTAAAAAATATATATTTTTTAAGTTTTATT
* * * **** *
6905702 ATAAGAAAAATTGATACTTTTAACTTTTCCTTACAAATG-TTTTTTTTTTATTTTATTTTCAAGG
1 ATAAGAAAAATTCATACTTTCAACTTTTCCTCA-AAATGCTTTTTTGAAAATTTTATTTTCAAGA
* ** * *
6905766 AAAATTGATATTTTTAACTTTTTCTCAAAAATATATATTTTTT
65 AAAATTGATACTTCCAACTTTTCCTAAAAAATATATATTTTTT
6905809 GAAATATTTA
Statistics
Matches: 89, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
117 84 0.94
118 5 0.06
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (117 bp):
ATAAGAAAAATTCATACTTTCAACTTTTCCTCAAAATGCTTTTTTGAAAATTTTATTTTCAAGAA
AAATTGATACTTCCAACTTTTCCTAAAAAATATATATTTTTTAAGTTTTATT
Found at i:6906778 original size:52 final size:52
Alignment explanation
Indices: 6906626--6906782 Score: 194
Period size: 52 Copynumber: 3.0 Consensus size: 52
6906616 TATAACCATA
* * * **
6906626 CAAACTTGCCCATTAAGAATCC-CTCTCCTCTTAGAATTCTTCTCCTATAAGT
1 CAAACTTGCCTATTAAGAATCCTCT-TTCTCTTAGAATTCTTCTCTTGCAAGT
*
6906678 CAAACTTGCCTATTAAGAATCCT-TTTCCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCTCTTT-CTCTTAGAATTCTTCTCTTGCAAGT
* *
6906730 CAAACTTACCTATTAAGAATCCTCTTTCTCTT-GAAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCTCTTTCTCTTAG-AATTCTTCTCTTGCAAGT
6906782 C
1 C
6906783 TTCTTGTCCA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
51 2 0.02
52 87 0.95
53 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.08, T:0.39
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCTCTTTCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:6906823 original size:11 final size:11
Alignment explanation
Indices: 6906807--6906848 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
6906797 GCAATATCTG
*
6906807 ACAAATCCCAA
1 ACAAATCTCAA
*
6906818 ACAAATCTCTA
1 ACAAATCTCAA
6906829 ACAAATCTCAA
1 ACAAATCTCAA
6906840 ACAAATCTC
1 ACAAATCTC
6906849 TTATGGGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:6906832 original size:22 final size:22
Alignment explanation
Indices: 6906807--6906849 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
6906797 GCAATATCTG
6906807 ACAAATCCCAAACAAATCTCTA
1 ACAAATCCCAAACAAATCTCTA
*
6906829 ACAAATCTCAAACAAATCTCT
1 ACAAATCCCAAACAAATCTCT
6906850 TATGGGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (22 bp):
ACAAATCCCAAACAAATCTCTA
Found at i:6907127 original size:24 final size:24
Alignment explanation
Indices: 6907099--6907190 Score: 87
Period size: 25 Copynumber: 3.8 Consensus size: 24
6907089 TCTTCCCATA
6907099 TCTCGAA-CTGTCAACTCTTTCACG
1 TCTCGAACCT-TCAACTCTTTCACG
* *
6907123 TCTCGAACCTTCAGCTCTTTCCACA
1 TCTCGAACCTTCAACTCTTT-CACG
* * *
6907148 TCTTGAATCTTCAACTCTTCTTACG
1 TCTCGAACCTTCAACTCTT-TCACG
* *
6907173 TTTCGAACCTTCAGCTCT
1 TCTCGAACCTTCAACTCT
6907191 GATACCACTT
Statistics
Matches: 54, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
24 16 0.30
25 37 0.69
26 1 0.02
ACGTcount: A:0.20, C:0.34, G:0.10, T:0.37
Consensus pattern (24 bp):
TCTCGAACCTTCAACTCTTTCACG
Found at i:6907164 original size:49 final size:50
Alignment explanation
Indices: 6907086--6907190 Score: 142
Period size: 49 Copynumber: 2.1 Consensus size: 50
6907076 TCTCAAACCA
*
6907086 AGCTCTTCCCATATCTCGAACTGTCAACTCTT-TCACGTCTCGAACCTTC
1 AGCTCTTCCCACATCTCGAACTGTCAACTCTTCTCACGTCTCGAACCTTC
* * * *
6907135 AGCTCTTTCCACATCTTGAATCT-TCAACTCTTCTTACGTTTCGAACCTTC
1 AGCTCTTCCCACATCTCGAA-CTGTCAACTCTTCTCACGTCTCGAACCTTC
6907185 AGCTCT
1 AGCTCT
6907191 GATACCACTT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
49 26 0.53
50 23 0.47
ACGTcount: A:0.20, C:0.34, G:0.10, T:0.36
Consensus pattern (50 bp):
AGCTCTTCCCACATCTCGAACTGTCAACTCTTCTCACGTCTCGAACCTTC
Found at i:6907828 original size:52 final size:52
Alignment explanation
Indices: 6907722--6907877 Score: 201
Period size: 52 Copynumber: 3.0 Consensus size: 52
6907712 TATAACCATA
* * * **
6907722 CAAACTTGCCCATTAAGAATCC-TCTCCTCTTAGAATTCTTCTCCTATAAGT
1 CAAACTTGCCTATTAAGAATCCTTTTCCTCTTAGAATTCTTCTCTTGCAAGT
*
6907773 CAAACTTGCCTATTAAGAATCCTTTTCCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCTTTTCCTCTTAGAATTCTTCTCTTGCAAGT
* *
6907825 CAAACTTACCTATTAAGAATCCTCTTT-CTCTT-GAAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCT-TTTCCTCTTAG-AATTCTTCTCTTGCAAGT
6907877 C
1 C
6907878 TTCTTGTCCA
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
51 22 0.24
52 68 0.73
53 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.08, T:0.40
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCTTTTCCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:6907918 original size:11 final size:11
Alignment explanation
Indices: 6907902--6907943 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
6907892 GCAATATCTG
*
6907902 ACAAATCCCAA
1 ACAAATCTCAA
*
6907913 ACAAATCTCTA
1 ACAAATCTCAA
6907924 ACAAATCTCAA
1 ACAAATCTCAA
6907935 ACAAATCTC
1 ACAAATCTC
6907944 TTATGGGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:6907927 original size:22 final size:22
Alignment explanation
Indices: 6907902--6907944 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
6907892 GCAATATCTG
6907902 ACAAATCCCAAACAAATCTCTA
1 ACAAATCCCAAACAAATCTCTA
*
6907924 ACAAATCTCAAACAAATCTCT
1 ACAAATCCCAAACAAATCTCT
6907945 TATGGGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (22 bp):
ACAAATCCCAAACAAATCTCTA
Found at i:6910057 original size:1 final size:1
Alignment explanation
Indices: 6910051--6910077 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
6910041 GGTGTTGCGT
6910051 GGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGG
6910078 TGTTCACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:6911232 original size:17 final size:16
Alignment explanation
Indices: 6911199--6911231 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6911189 ATGATATATC
6911199 ATAATAAATTGTAAAA
1 ATAATAAATTGTAAAA
6911215 ATAATATAATT-TAAAA
1 ATAATA-AATTGTAAAA
6911231 A
1 A
6911232 AAGAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
ATAATAAATTGTAAAA
Found at i:6911811 original size:21 final size:20
Alignment explanation
Indices: 6911752--6911813 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 20
6911742 TACTTTTTAT
6911752 TTATAATAATAATTTTTACA
1 TTATAATAATAATTTTTACA
* *
6911772 TTACTAAT-TTAATTATTTACG
1 TTA-TAATAATAATT-TTTACA
6911793 TTATAATAATAAATTTTTACA
1 TTATAATAAT-AATTTTTACA
6911814 CATGTTCTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
20 12 0.35
21 18 0.53
22 4 0.12
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (20 bp):
TTATAATAATAATTTTTACA
Found at i:6912274 original size:21 final size:21
Alignment explanation
Indices: 6912224--6912300 Score: 72
Period size: 21 Copynumber: 3.8 Consensus size: 21
6912214 TTAACACTTA
* *
6912224 TTTTTAGGTT-TAA-AATTAT
1 TTTTTATGTTATAATAATAAT
6912243 TTTTTAT-TTATAATAATAAT
1 TTTTTATGTTATAATAATAAT
*
6912263 TTTTTATGTTATCAAT-TTAAT
1 TTTTTATGTTAT-AATAATAAT
* *
6912284 TATTTATGTTACAATAA
1 TTTTTATGTTATAATAA
6912301 AATCTGTTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
18 2 0.04
19 9 0.19
20 15 0.32
21 18 0.38
22 3 0.06
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TTTTTATGTTATAATAATAAT
Found at i:6912428 original size:282 final size:278
Alignment explanation
Indices: 6911906--6912416 Score: 597
Period size: 281 Copynumber: 1.8 Consensus size: 278
6911896 AAATGATACA
* * *
6911906 AATTTTATGATTATTCTTATATTTTTACATAAACACTTTTTTTTATTGAATTATTTTTATTTATA
1 AATTTTATGATTATTCTCATATTTTTACATAAACACTTATTTTTATTAAATTATTTTTATTTATA
* * *
6911971 ATAATAATTCTTTTATATTGTCAACTTAATTATTTATGTTAACATAATTTATTTTTACGTTTATT
66 ATAATAATTCTTTTATATTATCAACTTAATTATTTATGTTAACATAA-TAATTGTTACGTTTATT
* * * * * * *
6912036 CTTGTATTACATTACGTTTAGAATTATCATAATTCTTTGTTAGGGTGTTATGATAGTTCTAACTT
130 CTTATATTACATTACATTTAGAATTATCATAATTCTTTCTTAGAGTATTATGATACTTCTAACAT
** * *
6912101 ATTTTACGTTAAACAATACTAATTTTACGATTATTCTCACCTTTTAATGCTATGATACTTTTAAC
195 ATTTTACGCCAAACAATACCAATTTTACAATTATTCTCACCTTTTAATGCTATGATACTTTTAAC
6912166 ATATTTTACATTAAATTAT
260 ATATTTTACATTAAATTAT
* *
6912185 AATTTTATGATTATTCTCATATTTTT-CTGTTAACACTTATTTTTAGGTTTAAAATTATTTTTTA
1 AATTTTATGATTATTCTCATATTTTTAC-ATAAACACTTATTTTTA---TT-AAATTA-TTTTTA
* * *
6912249 TTTATAATAATAATT-TTTTATGTTATCAATTTAATTATTTATGTT-ACAATAA-AATCTGTTAT
60 TTTATAATAATAATTCTTTTATATTATCAACTTAATTATTTATGTTAAC-ATAATAAT-TGTTAC
* ** * *
6912311 GCTTT-TTCTTATGTTTTATTATATTTAGAATTATCATAATTTTTTCTTA-AGTATTATGATACT
123 G-TTTATTCTTATATTACATTACATTTAGAATTATCATAATTCTTTCTTAGAGTATTATGATACT
* *
6912374 T-TGAACATATTTTATGCCAAA-ATATACCAATTTTATAATTATT
187 TCT-AACATATTTTACGCCAAACA-ATACCAATTTTACAATTATT
6912417 TTTAGCCTTT
Statistics
Matches: 192, Mismatches: 29, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
278 1 0.01
279 39 0.20
280 2 0.01
281 45 0.23
282 45 0.23
283 39 0.20
284 21 0.11
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.53
Consensus pattern (278 bp):
AATTTTATGATTATTCTCATATTTTTACATAAACACTTATTTTTATTAAATTATTTTTATTTATA
ATAATAATTCTTTTATATTATCAACTTAATTATTTATGTTAACATAATAATTGTTACGTTTATTC
TTATATTACATTACATTTAGAATTATCATAATTCTTTCTTAGAGTATTATGATACTTCTAACATA
TTTTACGCCAAACAATACCAATTTTACAATTATTCTCACCTTTTAATGCTATGATACTTTTAACA
TATTTTACATTAAATTAT
Found at i:6913351 original size:18 final size:19
Alignment explanation
Indices: 6913305--6913343 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
6913295 TTTTCGGTTT
*
6913305 AATAAAAAATATTATAAAA
1 AATATAAAATATTATAAAA
*
6913324 AATATAAAATATTTTAAAA
1 AATATAAAATATTATAAAA
6913343 A
1 A
6913344 TTCAAAATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AATATAAAATATTATAAAA
Found at i:6913533 original size:3 final size:3
Alignment explanation
Indices: 6913527--6913566 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
6913517 AGTAGTTAGA
* *
6913527 AAT AAT AAT TAT ATTT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
6913567 TTGTATTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 30 0.94
4 2 0.06
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
AAT
Found at i:6913830 original size:22 final size:22
Alignment explanation
Indices: 6913803--6913846 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6913793 AATTAATCAT
* *
6913803 TTTTATTATCATTTTTTATTAA
1 TTTTATAATCATTTTTAATTAA
*
6913825 TTTTATAATTATTTTTAATTAA
1 TTTTATAATCATTTTTAATTAA
6913847 GGTATCAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTTATAATCATTTTTAATTAA
Found at i:6914443 original size:20 final size:22
Alignment explanation
Indices: 6914418--6914460 Score: 72
Period size: 20 Copynumber: 2.0 Consensus size: 22
6914408 ACCTATTGCT
6914418 TTTTATAATT-TTTA-TTATAA
1 TTTTATAATTGTTTACTTATAA
6914438 TTTTATAATTGTTTACTTATAA
1 TTTTATAATTGTTTACTTATAA
6914460 T
1 T
6914461 AAAAAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.48
21 4 0.19
22 7 0.33
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTTATAATTGTTTACTTATAA
Found at i:6914826 original size:27 final size:27
Alignment explanation
Indices: 6914784--6914857 Score: 78
Period size: 29 Copynumber: 2.7 Consensus size: 27
6914774 AAACAATTTT
*
6914784 ATATTA-ATTAATAAATTTATAATTCAA
1 ATATTATATTAA-AAATTTAAAATTCAA
*
6914811 ATATTATATTAAAAATTTTTAAAATTTAA
1 ATATTATATTAAAAA--TTTAAAATTCAA
* *
6914840 TTATTATATTAAATATTT
1 ATATTATATTAAAAATTT
6914858 TATTATAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 12 0.30
28 5 0.12
29 23 0.57
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (27 bp):
ATATTATATTAAAAATTTAAAATTCAA
Found at i:6918750 original size:16 final size:17
Alignment explanation
Indices: 6918713--6918752 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
6918703 ATGCAATAAA
6918713 ATAAAAT-AAAAAATGT
1 ATAAAATAAAAAAATGT
6918729 AT-AAATAAAAAAAT-T
1 ATAAAATAAAAAAATGT
6918744 ATAAAATAA
1 ATAAAATAA
6918753 TTTATTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (17 bp):
ATAAAATAAAAAAATGT
Found at i:6920484 original size:17 final size:20
Alignment explanation
Indices: 6920473--6920533 Score: 76
Period size: 18 Copynumber: 3.2 Consensus size: 20
6920463 AAAATATTTT
6920473 TTATTATGAAATTATTATTA
1 TTATTATGAAATTATTATTA
*
6920493 TTATTAT--TATTATTATTA
1 TTATTATGAAATTATTATTA
*
6920511 TTATTAT--TATTATTATTA
1 TTATTATGAAATTATTATTA
6920529 TTATT
1 TTATT
6920534 GCATTCTATA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
18 33 0.82
20 7 0.17
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TTATTATGAAATTATTATTA
Found at i:6920489 original size:3 final size:3
Alignment explanation
Indices: 6920483--6920533 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
6920473 TTATTATGAA
6920483 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6920531 ATT
1 ATT
6920534 GCATTCTATA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:6921461 original size:17 final size:17
Alignment explanation
Indices: 6921425--6921462 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
6921415 CAAACCTACA
*
6921425 TTTTATTTTAATTCTAT
1 TTTTATTTTAACTCTAT
*
6921442 TTTTATTTTTACTCT-T
1 TTTTATTTTAACTCTAT
6921458 TTTTA
1 TTTTA
6921463 AATGAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTATTTTAACTCTAT
Found at i:6921475 original size:3 final size:3
Alignment explanation
Indices: 6921467--6921498 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
6921457 TTTTTAAATG
6921467 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
6921499 GTTAAATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:6924253 original size:43 final size:43
Alignment explanation
Indices: 6924181--6924401 Score: 248
Period size: 43 Copynumber: 5.1 Consensus size: 43
6924171 TCGAGAAGCC
** ** *
6924181 TTATTTATTTTTTGAAGTCATTGAGCCTCTACTTAGAGGAACT
1 TTATTTATTTTTCAAAGTTGTTGAGCCTCTACTTAGAGGAGCT
* * *
6924224 TTATATATTTTTCAAAGTTGTTGAACCTCTATTTAGAGGAGC-
1 TTATTTATTTTTCAAAGTTGTTGAGCCTCTACTTAGAGGAGCT
* * ** * *
6924266 CTATTTATTTTTCAAAGTTGTTGAGCCTTTGTTTAGAAGAGCC
1 TTATTTATTTTTCAAAGTTGTTGAGCCTCTACTTAGAGGAGCT
* *
6924309 TTATTTATTTTTTAGAAGTTATTGAGCCTCTACTTAGAGGAGCT
1 TTATTTATTTTTCA-AAGTTGTTGAGCCTCTACTTAGAGGAGCT
* *
6924353 TTATTTA-TTTTCAAAAGTAGTTGAGCCTCTACTTAAAGGAGCT
1 TTATTTATTTTTC-AAAGTTGTTGAGCCTCTACTTAGAGGAGCT
6924396 TTATTT
1 TTATTT
6924402 GTTTCTTAAA
Statistics
Matches: 149, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
42 36 0.24
43 82 0.55
44 31 0.21
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (43 bp):
TTATTTATTTTTCAAAGTTGTTGAGCCTCTACTTAGAGGAGCT
Found at i:6924433 original size:87 final size:85
Alignment explanation
Indices: 6924177--6924433 Score: 234
Period size: 87 Copynumber: 3.0 Consensus size: 85
6924167 ATTGTCGAGA
** * * * *
6924177 AGCCTTATTTATTTTTTGAAGTCA-TTGAGCCTCTACTTAGAGGAACTTTATATATTTTTCAAAG
1 AGCC-TATTTATTTTTCAAAGT-AGTTGAGCCTCTACTTAAAGGAGCTTTATTTATTTTTAAAAG
*
6924241 TTGTTGA-ACCTCTATTTAGAGG
64 TTATTGAGA-CTCTATTTAGAGG
* * ** * *
6924263 AGCCTATTTATTTTTCAAAGTTGTTGAGCCTTTGTTTAGAA-GAGCCTTATTTATTTTTTAGAAG
1 AGCCTATTTATTTTTCAAAGTAGTTGAGCCTCTACTTA-AAGGAGCTTTATTTA-TTTTTAAAAG
* *
6924327 TTATTGAGCCTCTACTTAGAGG
64 TTATTGAGACTCTATTTAGAGG
* *
6924349 AGCTTTATTTA-TTTTCAAAAGTAGTTGAGCCTCTACTTAAAGGAGCTTTATTTGTTTCTTAAAA
1 AGC-CTATTTATTTTTC-AAAGTAGTTGAGCCTCTACTTAAAGGAGCTTTATTTATTT-TTAAAA
* * *
6924413 GTCATAGAGACTCTTTTTAGA
63 GTTATTGAGACTCTATTTAGA
6924434 TGAGTTTTTG
Statistics
Matches: 135, Mismatches: 28, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
85 36 0.27
86 44 0.33
87 55 0.41
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (85 bp):
AGCCTATTTATTTTTCAAAGTAGTTGAGCCTCTACTTAAAGGAGCTTTATTTATTTTTAAAAGTT
ATTGAGACTCTATTTAGAGG
Found at i:6924760 original size:17 final size:17
Alignment explanation
Indices: 6924738--6924771 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
6924728 GACTTAATCA
6924738 ATTTATTT-TATTATTTT
1 ATTTATTTAT-TTATTTT
6924755 ATTTATTTATTTATTTT
1 ATTTATTTATTTATTTT
6924772 TATCATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.94
18 1 0.06
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
ATTTATTTATTTATTTT
Found at i:6925326 original size:96 final size:95
Alignment explanation
Indices: 6925142--6925318 Score: 214
Period size: 96 Copynumber: 1.9 Consensus size: 95
6925132 CAACAAGTAG
* * * * *
6925142 CAAAGAAGGCAGTGTGGTTGTGACTCATGTCGGCGGAGTGATGGCGACCAAAGATTAAGGTTTCA
1 CAAAGAAGGCAGTGTGGTTGTGACTCATGTCGACGGAGTGATGACGACCAAAAAGTAAAGTTTCA
*
6925207 AGTGCAGGATTCTGTTATAACTCACATAGA
66 AGTGCAGGATTCTATTATAACTCACATAGA
* *
6925237 CAAAGAAGGCAGTGGTGGTTGTGACTTACAT-T-GACGGAGTGATGATGATCAAAAAGTAAAGTT
1 CAAAGAAGGCAGT-GTGGTTGTGAC-T-CATGTCGACGGAGTGATGACGACCAAAAAGTAAAGTT
** *
6925300 TTGAGTGCAGGATTTTATT
63 TCAAGTGCAGGATTCTATT
6925319 GTGACTCATA
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
95 13 0.19
96 50 0.74
97 2 0.03
98 3 0.04
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.28
Consensus pattern (95 bp):
CAAAGAAGGCAGTGTGGTTGTGACTCATGTCGACGGAGTGATGACGACCAAAAAGTAAAGTTTCA
AGTGCAGGATTCTATTATAACTCACATAGA
Found at i:6925861 original size:60 final size:56
Alignment explanation
Indices: 6925700--6925913 Score: 177
Period size: 60 Copynumber: 3.7 Consensus size: 56
6925690 AAATTTTCAA
* * * * *
6925700 AAAAGGTTAAAGAATCAATTTTTCTT-AAAAATAAAAATTAAAAAAAAATTTTGAGG
1 AAAA-GTTAAAGTATCAATTTTCCTTGAAAATTAAAATTTAAAAAAAAATTTTAAGG
* *
6925756 AAAAGTTAAAGTATCAATTTTCCTTAAATAACTTCAATAA--TAAAAAAAGAGTTTTAAGG
1 AAAAGTTAAAGTATCAATTTTCCTTGAA-AA-TT-AA-AATTTAAAAAAA-AATTTTAAGG
* * *
6925815 AAAAGTTGAAAGTATCAATTTTTCTTGAAAATTAAAATTTCAAAAAAATACTATTTGAA-A
1 AAAAGTT-AAAGTATCAATTTTCCTTGAAAATTAAAATTT-AAAAAAA-A--ATTTTAAGG
* *
6925875 AAAAGTTAAAAGTATCAAATTTCCTTGAAGA-TAAAATTT
1 AAAAGTT-AAAGTATCAATTTTCCTTGAAAATTAAAATTT
6925914 TCAAAAATAC
Statistics
Matches: 131, Mismatches: 15, Indels: 21
0.78 0.09 0.13
Matches are distributed among these distances:
55 19 0.15
56 8 0.06
57 4 0.03
58 12 0.09
59 35 0.27
60 48 0.37
61 5 0.04
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.33
Consensus pattern (56 bp):
AAAAGTTAAAGTATCAATTTTCCTTGAAAATTAAAATTTAAAAAAAAATTTTAAGG
Found at i:6927933 original size:35 final size:36
Alignment explanation
Indices: 6927894--6927995 Score: 97
Period size: 35 Copynumber: 2.9 Consensus size: 36
6927884 TTTGTTTATC
*
6927894 AGATAGTA-AATTTTATATTTCT-TTTTTTTTTTAAG
1 AGATAGGATAATTTT-TATTTCTCTTTTTTTTTTAAG
* *
6927929 AGATAGGATAATTTTTTTTTCTCTTTTTTTTTTGAAA
1 AGATAGGATAATTTTTATTTCTCTTTTTTTTTT-AAG
* *
6927966 AGGACAGAATAA-TTTT-TTTCT-TTTTTTTTT
1 A-GATAGGATAATTTTTATTTCTCTTTTTTTTT
6927996 AAATAAAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
35 22 0.38
36 21 0.36
37 7 0.12
38 8 0.14
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (36 bp):
AGATAGGATAATTTTTATTTCTCTTTTTTTTTTAAG
Found at i:6927978 original size:38 final size:35
Alignment explanation
Indices: 6927913--6927995 Score: 96
Period size: 37 Copynumber: 2.3 Consensus size: 35
6927903 ATTTTATATT
* * * *
6927913 TCTTTTTTTTTTTAAGAGATAGGATAATTTTTTTTTC
1 TCTTTTTTTTTTGAAAAGACAGAATAA--TTTTTTTC
6927950 TCTTTTTTTTTTGAAAAGGACAGAATAATTTTTTTC
1 TCTTTTTTTTTTGAAAA-GACAGAATAATTTTTTTC
6927986 T-TTTTTTTTT
1 TCTTTTTTTTT
6927996 AAATAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
35 9 0.22
36 9 0.22
37 15 0.37
38 8 0.20
ACGTcount: A:0.22, C:0.06, G:0.10, T:0.63
Consensus pattern (35 bp):
TCTTTTTTTTTTGAAAAGACAGAATAATTTTTTTC
Found at i:6928068 original size:18 final size:19
Alignment explanation
Indices: 6928037--6928076 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
6928027 ATAAATAACT
* *
6928037 AAATTAAATAAAAAAATAA
1 AAATAAAATAAAAAAAGAA
6928056 AAATAAAAT-AAAAAAGAA
1 AAATAAAATAAAAAAAGAA
6928074 AAA
1 AAA
6928077 CCTACGGTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (19 bp):
AAATAAAATAAAAAAAGAA
Found at i:6929614 original size:52 final size:52
Alignment explanation
Indices: 6929459--6929615 Score: 179
Period size: 52 Copynumber: 3.0 Consensus size: 52
6929449 TATAACTATA
* * * * *
6929459 CAAACTTGCCCATTAAGAATCTCTCTCCTCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTGCCTATTAAGAATCTATTTCCTCTTAGAATTCTTCTCTTGCAAGT
* * * *
6929511 TAAACTTGCCTATTAAGAATCCATTTCCTTTTAGAATTCTTATCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCTATTTCCTCTTAGAATTCTTCTCTTGCAAGT
* * * * * *
6929563 CAAACTTACCTATTAAGAATCTTTTTTCTCTTAGAATTTTTCTTTTACAAGT
1 CAAACTTGCCTATTAAGAATCTATTTCCTCTTAGAATTCTTCTCTTGCAAGT
6929615 C
1 C
6929616 TTCTTGTCCA
Statistics
Matches: 86, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
52 86 1.00
ACGTcount: A:0.27, C:0.22, G:0.08, T:0.42
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCTATTTCCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:6929655 original size:11 final size:11
Alignment explanation
Indices: 6929639--6929681 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
6929629 AGCAATATCT
6929639 AACAAATCTCA
1 AACAAATCTCA
*
6929650 AACAAATCTCT
1 AACAAATCTCA
*
6929661 AACAAATCCCA
1 AACAAATCTCA
6929672 AACAAATCTC
1 AACAAATCTC
6929682 TTATGAGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.19
Consensus pattern (11 bp):
AACAAATCTCA
Found at i:6929661 original size:22 final size:22
Alignment explanation
Indices: 6929636--6929682 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
6929626 TCCAGCAATA
*
6929636 TCTAACAAATCTCAAACAAATC
1 TCTAACAAATCCCAAACAAATC
6929658 TCTAACAAATCCCAAACAAATC
1 TCTAACAAATCCCAAACAAATC
6929680 TCT
1 TCT
6929683 TATGAGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (22 bp):
TCTAACAAATCCCAAACAAATC
Found at i:6929951 original size:25 final size:25
Alignment explanation
Indices: 6929923--6929977 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
6929913 AAACCATGCA
*
6929923 CTTCCTACATCTTAAACATTT-AGCT
1 CTTCCTACATCTCAAAC-TTTCAGCT
*
6929948 CTTCTTACATCTCAAACTTTCAGCT
1 CTTCCTACATCTCAAACTTTCAGCT
6929973 CTTCC
1 CTTCC
6929978 ACGTCTCGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 3 0.12
25 23 0.88
ACGTcount: A:0.24, C:0.33, G:0.04, T:0.40
Consensus pattern (25 bp):
CTTCCTACATCTCAAACTTTCAGCT
Found at i:6930002 original size:25 final size:25
Alignment explanation
Indices: 6929957--6930048 Score: 69
Period size: 25 Copynumber: 3.7 Consensus size: 25
6929947 TCTTCTTACA
* * *
6929957 TCTCAAACTTTCAGCTC-TTCCACG
1 TCTCGAACCTTCAACTCTTTCCACG
* * *
6929981 TCTCGAACCTTCGACTTTTTCCACA
1 TCTCGAACCTTCAACTCTTTCCACG
* * * *
6930006 TCTTGAATCTTTAACTCTTCCCACG
1 TCTCGAACCTTCAACTCTTTCCACG
* *
6930031 TTTCGAACCTTCAGCTCT
1 TCTCGAACCTTCAACTCT
6930049 GATACCACTT
Statistics
Matches: 49, Mismatches: 18, Indels: 1
0.72 0.26 0.01
Matches are distributed among these distances:
24 12 0.24
25 37 0.76
ACGTcount: A:0.20, C:0.35, G:0.09, T:0.37
Consensus pattern (25 bp):
TCTCGAACCTTCAACTCTTTCCACG
Found at i:6930737 original size:52 final size:52
Alignment explanation
Indices: 6930581--6930737 Score: 174
Period size: 52 Copynumber: 3.0 Consensus size: 52
6930571 TATAACCATA
* * **
6930581 CAAACTTACCCATTAAGAAT-CTCTATCCTCTTAGAATTTTTCTCCGGTAAGT
1 CAAACTTACCTATTAAGAATCCTCT-TTCTCTTAGAATTTTTCTCTTGTAAGT
* * * * * * *
6930633 CAAACTTGCTTATTAAAAATCC-CTTTCCTTTTAAAATTCTTCTCTTGCAAGT
1 CAAACTTACCTATTAAGAATCCTCTTT-CTCTTAGAATTTTTCTCTTGTAAGT
*
6930685 CAAACTTACCTATTAAGAATCCTCTTTCTCTTAGAATTTTTCTTTTGTAAGT
1 CAAACTTACCTATTAAGAATCCTCTTTCTCTTAGAATTTTTCTCTTGTAAGT
6930737 C
1 C
6930738 TTCTTGTCCA
Statistics
Matches: 83, Mismatches: 19, Indels: 6
0.77 0.18 0.06
Matches are distributed among these distances:
51 1 0.01
52 77 0.93
53 5 0.06
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCCTCTTTCTCTTAGAATTTTTCTCTTGTAAGT
Found at i:6930777 original size:11 final size:11
Alignment explanation
Indices: 6930761--6930814 Score: 81
Period size: 11 Copynumber: 4.9 Consensus size: 11
6930751 AACAATATCT
6930761 AACAAATCTCA
1 AACAAATCTCA
6930772 AACAAATCTCA
1 AACAAATCTCA
*
6930783 AACAAATCTCT
1 AACAAATCTCA
*
6930794 AACAAATCCCA
1 AACAAATCTCA
*
6930805 AATAAATCTC
1 AACAAATCTC
6930815 TTATGGGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 38 1.00
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.20
Consensus pattern (11 bp):
AACAAATCTCA
Found at i:6931830 original size:53 final size:52
Alignment explanation
Indices: 6931713--6931870 Score: 176
Period size: 52 Copynumber: 3.0 Consensus size: 52
6931703 TATAACCATA
* * * * * *
6931713 CAAACTTGCCCATTAAGAATC-TCTCTCCTCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTACCTATTAAAAATCTTCT-TTCTCTTAGAATTCTTCTCTTGCAAGT
* * * *
6931765 CAAACTTGCCTATTAAAAATCTCTTTTTTTTTTTA-AATTCTTCTCTTGCAAGT
1 CAAACTTACCTATTAAAAA--TCTTCTTTCTCTTAGAATTCTTCTCTTGCAAGT
*
6931818 CAAACTTACCTATTAAAAATCTTCTTTCTCTTAGAATTCTTCTTTTGCAAGT
1 CAAACTTACCTATTAAAAATCTTCTTTCTCTTAGAATTCTTCTCTTGCAAGT
6931870 C
1 C
6931871 TTCTTGTCCA
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
51 11 0.12
52 35 0.39
53 34 0.38
54 7 0.08
55 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.07, T:0.43
Consensus pattern (52 bp):
CAAACTTACCTATTAAAAATCTTCTTTCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:6936942 original size:39 final size:39
Alignment explanation
Indices: 6936899--6936973 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
6936889 ATTATCAGTG
* *
6936899 TATAAATTAAAGTTTATAATATTCAATGAATATCAACAA
1 TATAAATTAAAATTTAAAATATTCAATGAATATCAACAA
6936938 TATAAATTAAAATTTAAAATATTCAATGAATATCAA
1 TATAAATTAAAATTTAAAATATTCAATGAATATCAA
6936974 TTATCTTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (39 bp):
TATAAATTAAAATTTAAAATATTCAATGAATATCAACAA
Found at i:6939419 original size:3 final size:3
Alignment explanation
Indices: 6939411--6939439 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
6939401 AAGATTTAAT
6939411 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6939440 TGTAAAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:6939888 original size:22 final size:21
Alignment explanation
Indices: 6939840--6939900 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 21
6939830 AAATAATATT
* *
6939840 TTTAAATATTATTAATTTTCA
1 TTTAAATTTTATTAATTATCA
6939861 TATTAAATTTTATTAATTATCAA
1 T-TTAAATTTTATTAATTATC-A
6939884 TTTAAAATTTTTATTAA
1 TTT-AAA-TTTTATTAA
6939901 ACCATTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 1 0.03
22 19 0.56
23 5 0.15
24 9 0.26
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTAAATTTTATTAATTATCA
Found at i:6939945 original size:23 final size:24
Alignment explanation
Indices: 6939904--6939954 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
6939894 TTATTAAACC
6939904 ATTTTTTTTAAAAAATTCA-C-AA
1 ATTTTTTTTAAAAAATTCATCTAA
**
6939926 ATTTTTTTTAAAATTTTTCATCTAA
1 ATTTTTTTTAAAA-AATTCATCTAA
6939951 ATTT
1 ATTT
6939955 GTATTGCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 13 0.54
23 4 0.17
24 1 0.04
25 6 0.25
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (24 bp):
ATTTTTTTTAAAAAATTCATCTAA
Found at i:6943837 original size:20 final size:19
Alignment explanation
Indices: 6943812--6943864 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
6943802 GGGATTTTTA
6943812 TTTATTTTTATTTAAAATTT
1 TTTATTTTTATTTAAAA-TT
* **
6943832 TTTATTTCATATTTATCATT
1 TTTATTT-TTATTTAAAATT
6943852 TTTATTTTTATTT
1 TTTATTTTTATTT
6943865 TATGATTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 5 0.18
20 16 0.57
21 7 0.25
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTATTTTTATTTAAAATT
Found at i:6943866 original size:20 final size:20
Alignment explanation
Indices: 6943812--6943872 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 20
6943802 GGGATTTTTA
*
6943812 TTTATTTTTA-TTTAAAATT
1 TTTATTTTTATTTTATAATT
* *
6943831 TTT-TATTTCATATTTATCATT
1 TTTAT-TTTTAT-TTTATAATT
*
6943852 TTTATTTTTATTTTATGATT
1 TTTATTTTTATTTTATAATT
6943872 T
1 T
6943873 ATTTTCTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
18 1 0.03
19 7 0.21
20 9 0.27
21 15 0.45
22 1 0.03
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTATTTTTATTTTATAATT
Found at i:6946439 original size:58 final size:58
Alignment explanation
Indices: 6946343--6946802 Score: 358
Period size: 58 Copynumber: 7.9 Consensus size: 58
6946333 AAAAAAACAT
** * *
6946343 AAAATAAAATTTCCAAAAAAAAATATTTTT-AGGGAAAAGTTGAGAGTATAAATTTTCTTTG
1 AAAATAAAATTTCC---AAAAAATATTTTTGA-AAAAAAGTTGAAAGTATCAATTTTCTTTG
** * * *
6946404 AAAATAAGCTTTCCAAAAAATATTTTTGAAAAAAAGTTGAAAGTGTCAATTTTCCTTA
1 AAAATAAAATTTCCAAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCTTTG
* * * ** * *
6946462 AAAATAAATTTTCAAAAAAAAAGTTTTTGATTAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAATAAAATTTCCAAAAAATA-TTTTTGAAAAAAAGTTGAAAGTATCAATTTTCTTTG
* * * *
6946521 AAAAT-AAATTTTCAAAAAAAATTTTTGAAGAAAAGTTGAAAGTATCAATTTT-TCTCG
1 AAAATAAAATTTCCAAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCT-TTG
* ** *** * * * *
6946578 AAATTAAGGTTTCCAAAAAATATTTTTGGGGAAAAGTTAAAACTTTCAACTTTT-TCTTA
1 AAAATAAAATTTCCAAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAA-TTTTCT-TTG
* * * * * *
6946637 AAAATAAATTTTCAAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCG
1 AAAATAAAATTTCCAAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCTTTG
* * * * * *
6946695 AAATTAAAGTTT-CAAAAGATA-TTTTGGAAAAAAGTTGAAAGTATTAATTTTCTTCG
1 AAAATAAAATTTCCAAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCTTTG
* * * * ** *
6946751 AGATTAAAATTTCTAAAAAATATTTTAG-GGAAAAGTTAAAAGTATCAATTTT
1 AAAATAAAATTTCCAAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTT
6946803 TCTTGCACAA
Statistics
Matches: 324, Mismatches: 67, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
56 41 0.13
57 67 0.21
58 119 0.37
59 85 0.26
61 12 0.04
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (58 bp):
AAAATAAAATTTCCAAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCTTTG
Found at i:6946501 original size:59 final size:58
Alignment explanation
Indices: 6946343--6946746 Score: 373
Period size: 59 Copynumber: 6.9 Consensus size: 58
6946333 AAAAAAACAT
* * ** * * * *
6946343 AAAATAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAGAGTATAAATTTTCTTTG
1 AAAAT-AAATTTTCAAAAAAAAAT-TTTTGA-AAAAAAGTTGAAAGTATCAATTTTCCTTA
** * * *
6946404 AAAATAAGCTTTCCAAAAAATATTTTTGAAAAAAAGTTGAAAGTGTCAATTTTCCTTA
1 AAAATAAATTTTCAAAAAAAAATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTTA
**
6946462 AAAATAAATTTTCAAAAAAAAAGTTTTTGATTAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAATAAATTTTCAAAAAAAAA-TTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTTA
* * **
6946521 AAAATAAATTTTC-AAAAAAAATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTCG
1 AAAATAAATTTTCAAAAAAAAATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTTA
* ** * * *** * * * *
6946578 AAATTAAGGTTTCCAAAAAATATTTTTGGGGAAAAGTTAAAACTTTCAACTTTTTCTTA
1 AAAATAAATTTTCAAAAAAAAATTTTTGAAAAAAAGTTGAAAGTATCAA-TTTTCCTTA
* * **
6946637 AAAATAAATTTTCAAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCG
1 AAAATAAATTTTCAAAAAAAAATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTTA
* * * * * *
6946695 AAATTAAAGTTTC-AAAAGATA-TTTTGGAAAAAAGTTGAAAGTATTAATTTTC
1 AAAATAAATTTTCAAAAAAAAATTTTTGAAAAAAAGTTGAAAGTATCAATTTTC
6946747 TTCGAGATTA
Statistics
Matches: 284, Mismatches: 56, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
56 28 0.10
57 47 0.17
58 94 0.33
59 97 0.34
60 13 0.05
61 5 0.02
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (58 bp):
AAAATAAATTTTCAAAAAAAAATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTTA
Found at i:6946656 original size:174 final size:173
Alignment explanation
Indices: 6946343--6946806 Score: 542
Period size: 174 Copynumber: 2.7 Consensus size: 173
6946333 AAAAAAACAT
* * * * * *
6946343 AAAATAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAGAGTATAAATTTTCTTTGAAAA
1 AAAAT-AAATTTTC-AAAAAAAAT-TTTTGA-AGAAAAGTTGAAAGTAT-AATTTTCTTCGAAAT
* *** * * *
6946408 TAAGCTTTCCAAAAAATATTTTTGAAAAAAAGTTGAAAGTGTCAATTTTCCTTAAAAATAAATTT
61 TAAGATTTCCAAAAAATATTTTTGGGGAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAATTT
** *
6946473 TCAAAAAAAA-AGTTTTTGATTAAAAGTTGAAAGTATCAATTTTCCTTA
126 TCAAAAAAAAGA-TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCA
6946521 AAAATAAATTTTCAAAAAAAATTTTTGAAGAAAAGTTGAAAGTATCAATTTT-TCTCGAAATTAA
1 AAAATAAATTTTCAAAAAAAATTTTTGAAGAAAAGTTGAAAGTAT-AATTTTCT-TCGAAATTAA
* * *
6946585 GGTTTCCAAAAAATATTTTTGGGGAAAAGTTAAAACTTTCAACTTTTTCTTAAAAATAAATTTTC
64 GATTTCCAAAAAATATTTTTGGGGAAAAGTTAAAAGTATCAA-TTTTTCTTAAAAATAAATTTTC
*
6946650 -AAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCG
128 AAAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCA
* * * * * * *
6946695 AAATTAAAGTTTCAAAAGATATTTTGGAA-AAAAGTTGAAAGTATTAATTTTCTTCGAGATTAAA
1 AAAATAAATTTTCAAAAAAAATTTTTGAAGAAAAGTTGAAAGTA-TAATTTTCTTCGAAATTAAG
* *
6946759 ATTTCTAAAAAATA-TTTTAGGGAAAAGTTAAAAGTATCAATTTTTCTT
65 ATTTCCAAAAAATATTTTTGGGGAAAAGTTAAAAGTATCAATTTTTCTT
6946807 GCACAAAAAA
Statistics
Matches: 250, Mismatches: 31, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
171 8 0.03
172 23 0.09
173 42 0.17
174 129 0.52
175 27 0.11
176 9 0.04
177 7 0.03
178 5 0.02
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.36
Consensus pattern (173 bp):
AAAATAAATTTTCAAAAAAAATTTTTGAAGAAAAGTTGAAAGTATAATTTTCTTCGAAATTAAGA
TTTCCAAAAAATATTTTTGGGGAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAA
AAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCA
Found at i:6947367 original size:10 final size:10
Alignment explanation
Indices: 6947352--6947417 Score: 55
Period size: 10 Copynumber: 6.7 Consensus size: 10
6947342 AATATTAAAA
6947352 TAAAAATTTT
1 TAAAAATTTT
6947362 TAAAAA-TTT
1 TAAAAATTTT
**
6947371 TAAAAATTAA
1 TAAAAATTTT
* *
6947381 GAAAAATTCT
1 TAAAAATTTT
*
6947391 AAAAAATATTT
1 TAAAAAT-TTT
*
6947402 T-AAATTTTT
1 TAAAAATTTT
6947411 TAAAAAT
1 TAAAAAT
6947418 CTAAAATATT
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
9 13 0.30
10 28 0.65
11 2 0.05
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (10 bp):
TAAAAATTTT
Found at i:6947371 original size:9 final size:9
Alignment explanation
Indices: 6947352--6947509 Score: 63
Period size: 9 Copynumber: 17.3 Consensus size: 9
6947342 AATATTAAAA
6947352 TAAAAATTTT
1 TAAAAA-TTT
6947362 TAAAAATTT
1 TAAAAATTT
*
6947371 TAAAAATTAA
1 TAAAAATT-T
*
6947381 GAAAAATTCT
1 TAAAAATT-T
*
6947391 AAAAAATATTT
1 -TAAAA-ATTT
**
6947402 TAAATTTTT
1 TAAAAATTT
*
6947411 TAAAAA-TC
1 TAAAAATTT
6947419 TAAAATATTT
1 TAAAA-ATTT
*
6947429 T-AAAATTG
1 TAAAAATTT
* * *
6947437 CAATATTTT
1 TAAAAATTT
* *
6947446 TAGAAATTA
1 TAAAAATTT
6947455 TAAAAATTT
1 TAAAAATTT
* *
6947464 TAAAAAATA
1 TAAAAATTT
* *
6947473 TGAAAA-CT
1 TAAAAATTT
*
6947481 TAAAAAATT
1 TAAAAATTT
* *
6947490 CAAAAA-TC
1 TAAAAATTT
6947498 TAAAAATTT
1 TAAAAATTT
6947507 TAA
1 TAA
6947510 TATTAATAAA
Statistics
Matches: 105, Mismatches: 35, Indels: 17
0.67 0.22 0.11
Matches are distributed among these distances:
8 20 0.19
9 59 0.56
10 18 0.17
11 5 0.05
12 3 0.03
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.38
Consensus pattern (9 bp):
TAAAAATTT
Found at i:6947542 original size:17 final size:17
Alignment explanation
Indices: 6947520--6947569 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
6947510 TATTAATAAA
6947520 AAAATTTTCA-AAAAAT
1 AAAATTTTCATAAAAAT
* *
6947536 GAAAATTGTAATAAAAAT
1 -AAAATTTTCATAAAAAT
*
6947554 AAAATTTTCTTAAAAA
1 AAAATTTTCATAAAAA
6947570 AAATCACATA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 21 0.78
18 6 0.22
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (17 bp):
AAAATTTTCATAAAAAT
Found at i:6947676 original size:20 final size:19
Alignment explanation
Indices: 6947599--6947679 Score: 62
Period size: 20 Copynumber: 4.3 Consensus size: 19
6947589 AATGAAAATA
*
6947599 AAAAAATCTAAAATTT-TG
1 AAAAAATCTAAAATTTATT
* *
6947617 AAACAATTTAAAA---ATT
1 AAAAAATCTAAAATTTATT
* *
6947633 AAAAGAATCTAACATTTTTGT
1 AAAA-AATCTAAAATTTAT-T
6947654 AAAAAATCTAAAACTTTATT
1 AAAAAATCTAAAA-TTTATT
6947674 AAAAAA
1 AAAAAA
6947680 ATATACAAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
16 4 0.09
17 7 0.15
18 11 0.23
20 16 0.34
21 9 0.19
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.32
Consensus pattern (19 bp):
AAAAAATCTAAAATTTATT
Found at i:6947724 original size:16 final size:17
Alignment explanation
Indices: 6947693--6947726 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
6947683 TACAAAATTT
*
6947693 TAAAAAATTTTGAAAAA
1 TAAAAAATTTTCAAAAA
6947710 TAAAAAA-TTTCAAAAA
1 TAAAAAATTTTCAAAAA
6947726 T
1 T
6947727 CTGAAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (17 bp):
TAAAAAATTTTCAAAAA
Found at i:6947929 original size:20 final size:20
Alignment explanation
Indices: 6947906--6947947 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
6947896 AAAATTAAAA
*
6947906 TTTTT-AAAAATTTTTAGAT
1 TTTTTCAAAAAATTTTAGAT
*
6947925 TTTTTCAAAAAATTTTATAT
1 TTTTTCAAAAAATTTTAGAT
6947945 TTT
1 TTT
6947948 ATATTTTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTTTCAAAAAATTTTAGAT
Found at i:6948000 original size:20 final size:21
Alignment explanation
Indices: 6947957--6948004 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
6947947 TATATTTTCA
* * *
6947957 TTTTTTCAGTTTTAGTGAATT
1 TTTTTTTAATTTTAGTGAAAT
6947978 TTTTTTTAATTTTAG-GAAAT
1 TTTTTTTAATTTTAGTGAAAT
6947998 TTTTTTT
1 TTTTTTT
6948005 TTACTAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.21, C:0.02, G:0.10, T:0.67
Consensus pattern (21 bp):
TTTTTTTAATTTTAGTGAAAT
Found at i:6948122 original size:11 final size:12
Alignment explanation
Indices: 6948098--6948162 Score: 58
Period size: 12 Copynumber: 5.1 Consensus size: 12
6948088 ATTTTTAAAG
*
6948098 TTTTCATAATTT
1 TTTTTATAATTT
6948110 TTTTTATAATTT
1 TTTTTATAATTT
*
6948122 TTTTTAAAATATCT
1 TTTTTATAAT-T-T
*
6948136 ATGTTTTTTAATTT
1 -T-TTTTATAATTT
*
6948150 TTTTTTTAATTT
1 TTTTTATAATTT
6948162 T
1 T
6948163 GTAAAATGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
12 32 0.71
13 2 0.04
14 2 0.04
15 2 0.04
16 7 0.16
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.71
Consensus pattern (12 bp):
TTTTTATAATTT
Found at i:6948204 original size:20 final size:20
Alignment explanation
Indices: 6948181--6948218 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
6948171 TTTTACATTT
6948181 TTTAAAAAAAATTTAGAAAA
1 TTTAAAAAAAATTTAGAAAA
*
6948201 TTTAAAAAAATTTTAGAA
1 TTTAAAAAAAATTTAGAA
6948219 TTTTTTAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
TTTAAAAAAAATTTAGAAAA
Found at i:6948662 original size:16 final size:17
Alignment explanation
Indices: 6948638--6948679 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
6948628 CAAAATATAT
6948638 CTAATAAAAAATAA-AAA
1 CTAA-AAAAAATAATAAA
*
6948655 TTAAAAAAAATAATAAA
1 CTAAAAAAAATAATAAA
6948672 CTAAAAAA
1 CTAAAAAA
6948680 TAAAACAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (17 bp):
CTAAAAAAAATAATAAA
Found at i:6950132 original size:29 final size:30
Alignment explanation
Indices: 6950098--6950180 Score: 80
Period size: 32 Copynumber: 2.7 Consensus size: 30
6950088 ATGAATTAAA
*
6950098 TATTAATTATGTATAAATATATTATTTT-T
1 TATTAATTATGTATAAATATATAATTTTAT
*
6950127 TATTAAATTAAGATATTAAATA-ATAATTTTAT
1 TATT-AATTATG-TA-TAAATATATAATTTTAT
* *
6950159 TATATAATAATATATAAATATA
1 TAT-TAATTATGTATAAATATA
6950181 AATAGAATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
29 4 0.09
30 12 0.28
31 12 0.28
32 14 0.33
33 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.49
Consensus pattern (30 bp):
TATTAATTATGTATAAATATATAATTTTAT
Found at i:6950750 original size:21 final size:21
Alignment explanation
Indices: 6950724--6950791 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
6950714 CCAATTAATG
6950724 TAATATATATAATTAAATGAA
1 TAATATATATAATTAAATGAA
* *
6950745 TAATATCTAGT-TTTATTAATG--
1 TAATATATA-TAATTA--AATGAA
6950766 TAATATATATAATTAAATGAA
1 TAATATATATAATTAAATGAA
6950787 TAATA
1 TAATA
6950792 AAATATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 27 0.73
22 1 0.03
23 4 0.11
ACGTcount: A:0.50, C:0.01, G:0.06, T:0.43
Consensus pattern (21 bp):
TAATATATATAATTAAATGAA
Found at i:6950814 original size:42 final size:41
Alignment explanation
Indices: 6950717--6950818 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 41
6950707 TTATTTACCA
* ** *
6950717 ATTAATGTAATATATATAATTAAATGAATAATATCTAGTTTT
1 ATTAATATAATATATATAATTAAATGAATAATAAATAG-TAT
*
6950759 ATTAATGTAATATATATAATTAAATGAATAATAAAATA-TAT
1 ATTAATATAATATATATAATTAAATGAATAAT-AAATAGTAT
*
6950800 ATTTATATATATATATATA
1 ATTAATATA-ATATATATA
6950819 TTTGAGTAGG
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
41 9 0.17
42 41 0.77
43 3 0.06
ACGTcount: A:0.50, C:0.01, G:0.05, T:0.44
Consensus pattern (41 bp):
ATTAATATAATATATATAATTAAATGAATAATAAATAGTAT
Found at i:6951140 original size:23 final size:23
Alignment explanation
Indices: 6951114--6951171 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
6951104 ATATCTAATT
6951114 TAAGAAAAAGAAAAGAAAAAA-AC
1 TAAGAAAAA-AAAAGAAAAAAGAC
*
6951137 TAAG-AAAAAATAGAAAAAAGAC
1 TAAGAAAAAAAAAGAAAAAAGAC
*
6951159 TAAAAAAAAAAAA
1 TAAGAAAAAAAAA
6951172 TTGAGTTGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 10 0.33
22 9 0.30
23 11 0.37
ACGTcount: A:0.79, C:0.03, G:0.10, T:0.07
Consensus pattern (23 bp):
TAAGAAAAAAAAAGAAAAAAGAC
Found at i:6952478 original size:10 final size:10
Alignment explanation
Indices: 6952446--6952488 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
6952436 TTGAACAATT
*
6952446 AAAAAGTTTA
1 AAAAATTTTA
* *
6952456 AAAAAATCT-
1 AAAAATTTTA
6952465 AAAAATTTTA
1 AAAAATTTTA
6952475 AAAAATTTTA
1 AAAAATTTTA
6952485 AAAA
1 AAAA
6952489 TCTCCTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 7 0.25
10 21 0.75
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (10 bp):
AAAAATTTTA
Found at i:6952486 original size:19 final size:19
Alignment explanation
Indices: 6952444--6952489 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
6952434 TTTTGAACAA
*
6952444 TTAAAAAGTTTAAAAAAAT
1 TTAAAAATTTTAAAAAAAT
* *
6952463 CTAAAAATTTTAAAAAATT
1 TTAAAAATTTTAAAAAAAT
6952482 TTAAAAAT
1 TTAAAAAT
6952490 CTCCTAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
TTAAAAATTTTAAAAAAAT
Found at i:6958788 original size:3 final size:3
Alignment explanation
Indices: 6958780--6958851 Score: 119
Period size: 3 Copynumber: 24.3 Consensus size: 3
6958770 CAAATAGTCG
*
6958780 ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
6958828 ATT GTT ATT ATT ATT ATT -TT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
6958852 CGTAATAAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
2 2 0.03
3 62 0.97
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:6959010 original size:24 final size:23
Alignment explanation
Indices: 6958955--6959008 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 23
6958945 TTTTCTTTTG
6958955 TATTTTATGTATTCTATTATTAT
1 TATTTTATGTATTCTATTATTAT
6958978 TATTATTATGTATATCT-TTATTCATT
1 TATT-TTATGTAT-TCTATTATT-A-T
6959004 TATTT
1 TATTT
6959009 ATTTTTATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
23 4 0.15
24 13 0.48
25 5 0.19
26 5 0.19
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.65
Consensus pattern (23 bp):
TATTTTATGTATTCTATTATTAT
Found at i:6959067 original size:3 final size:3
Alignment explanation
Indices: 6959059--6959084 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
6959049 AGTTATATAT
6959059 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
6959085 TTTGTAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:6960002 original size:14 final size:15
Alignment explanation
Indices: 6959983--6960024 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
6959973 CCGAGCCGAG
6959983 CCGAGCCGTTCTTC-
1 CCGAGCCGTTCTTCT
6959997 CCGAGCCG--CTTCT
1 CCGAGCCGTTCTTCT
6960010 CCGAGCCGTT-TTCT
1 CCGAGCCGTTCTTCT
6960024 C
1 C
6960025 TTCCTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 4 0.16
13 8 0.32
14 13 0.52
ACGTcount: A:0.07, C:0.43, G:0.21, T:0.29
Consensus pattern (15 bp):
CCGAGCCGTTCTTCT
Found at i:6960015 original size:13 final size:14
Alignment explanation
Indices: 6959983--6960019 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
6959973 CCGAGCCGAG
6959983 CCGAGCCGTTCTTC
1 CCGAGCCGTTCTTC
6959997 CCGAGCCG--CTTC
1 CCGAGCCGTTCTTC
6960009 TCCGAGCCGTT
1 -CCGAGCCGTT
6960020 TTCTCTTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 4 0.20
13 8 0.40
14 8 0.40
ACGTcount: A:0.08, C:0.43, G:0.24, T:0.24
Consensus pattern (14 bp):
CCGAGCCGTTCTTC
Found at i:6960093 original size:11 final size:11
Alignment explanation
Indices: 6960077--6960106 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
6960067 CAGGTTTTTT
6960077 TTTTTTTTGAA
1 TTTTTTTTGAA
6960088 TTTTTTTTGAA
1 TTTTTTTTGAA
6960099 TTTTTTTT
1 TTTTTTTT
6960107 TATTTGACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:6960319 original size:152 final size:152
Alignment explanation
Indices: 6960136--6960433 Score: 551
Period size: 152 Copynumber: 2.0 Consensus size: 152
6960126 TCTTGATTTT
*
6960136 TTTTCTTTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGC
1 TTTTCTTTTTTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGC
*
6960201 ATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTTAATTGAGAATAA
66 ATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
* *
6960266 TTTCCAATAATTAATTGGATGA
131 TTTCCAACAACTAATTGGATGA
*
6960288 TTTTGTTTTTTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGC
1 TTTTCTTTTTTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGC
6960353 ATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
66 ATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
6960418 TTTCCAACAACTAATT
131 TTTCCAACAACTAATT
6960434 ACTTGGTAAA
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
152 141 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (152 bp):
TTTTCTTTTTTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGC
ATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
TTTCCAACAACTAATTGGATGA
Found at i:6964151 original size:10 final size:10
Alignment explanation
Indices: 6964136--6964172 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
6964126 AGAAGATGAT
6964136 GAAAAAAAAA
1 GAAAAAAAAA
*
6964146 GAAAAAAATA
1 GAAAAAAAAA
*
6964156 GAAAAAAAAG
1 GAAAAAAAAA
6964166 GAAAAAA
1 GAAAAAA
6964173 TGAGAAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.03
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:6964160 original size:19 final size:20
Alignment explanation
Indices: 6964111--6964180 Score: 83
Period size: 19 Copynumber: 3.6 Consensus size: 20
6964101 ACAACGGATG
6964111 AAAAATGAG-AAAAAAAGAA
1 AAAAATGAGAAAAAAAAGAA
* **
6964130 GATGATGA-AAAAAAAAGAA
1 AAAAATGAGAAAAAAAAGAA
*
6964149 AAAAAT-AGAAAAAAAAGGA
1 AAAAATGAGAAAAAAAAGAA
6964168 AAAAATGAGAAAA
1 AAAAATGAGAAAA
6964181 TGAAAAAAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
18 1 0.02
19 34 0.83
20 6 0.15
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (20 bp):
AAAAATGAGAAAAAAAAGAA
Found at i:6965508 original size:41 final size:41
Alignment explanation
Indices: 6965425--6966145 Score: 1137
Period size: 41 Copynumber: 17.5 Consensus size: 41
6965415 AAAGTTCCGT
*
6965425 TGCCTCTGTTTAGAGGAGCAATTTATCTTTTCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTA-CTTTTCAAAGTCGTGG
6965467 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
*
6965508 TACCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
*
6965549 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
*
6965590 TGCCTCTGTTGAGAGGAGCAATTTATTTTTTCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTA-CTTTTCAAAGTCGTGG
6965632 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
*
6965673 TGCCTCTGTTGAGAGGAGCAATTTATTTTTTCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTA-CTTTTCAAAGTCGTGG
*
6965715 TGCCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
6965756 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
* *
6965797 TGCCTCTGTTGAGAGGAGCAATTTAATTTCCAAAGTTCCGT--
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAG-T-CGTGG
*
6965838 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
* *
6965879 TGCCTCTGTTGAGAGGAGCAATTTAATTTCCAAAGTTCCGT--
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAG-T-CGTGG
* *
6965920 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTT-CAAAGTCGTGG
*
6965962 TACCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
*
6966003 TGCCTCTGTTGAAGAGGAGCAATTTACTTTCCAAAGTCGTGG
1 TGCCTCTGTTG-AGAGGAGCAATTTACTTTTCAAAGTCGTGG
6966045 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
* *
6966086 TACCTCTGTTGAGAGGAGCAATTTAC-TTTCAAAAGTCGTTG
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTC-AAAGTCGTGG
* * *
6966127 AGTCTCTGTTTAGAGGAGC
1 TGCCTCTGTTGAGAGGAGC
6966146 TTCGGCAAAA
Statistics
Matches: 632, Mismatches: 34, Indels: 27
0.91 0.05 0.04
Matches are distributed among these distances:
39 3 0.00
40 8 0.01
41 437 0.69
42 178 0.28
43 6 0.01
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (41 bp):
TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGG
Found at i:6965516 original size:83 final size:82
Alignment explanation
Indices: 6965425--6966145 Score: 1137
Period size: 83 Copynumber: 8.7 Consensus size: 82
6965415 AAAGTTCCGT
*
6965425 TGCCTCTGTTTAGAGGAGCAATTTATCTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
1 TGCCTCTGTTGAGAGGAGCAATTTA-CTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
6965490 TACTTTTCAAAGTCGTGG
65 TACTTTTCAAAGTCGTGG
* *
6965508 TACCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTT
6965573 ACTTTTCAAAGTCGTGG
66 ACTTTTCAAAGTCGTGG
*
6965590 TGCCTCTGTTGAGAGGAGCAATTTATTTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
1 TGCCTCTGTTGAGAGGAGCAATTTA-CTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
6965655 TACTTTTCAAAGTCGTGG
65 TACTTTTCAAAGTCGTGG
*
6965673 TGCCTCTGTTGAGAGGAGCAATTTATTTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
1 TGCCTCTGTTGAGAGGAGCAATTTA-CTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
*
6965738 TACTTTCCAAAGTCGTGG
65 TACTTTTCAAAGTCGTGG
6965756 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTT
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTT
* *
6965821 AATTTCCAAAGTTCCGT--
66 ACTTTTCAAAG-T-CGTGG
*
6965838 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTT
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTT
* *
6965903 AATTTCCAAAGTTCCGT--
66 ACTTTTCAAAG-T-CGTGG
* * *
6965920 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATT
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
6965985 TACTTTTCAAAGTCGTGG
65 TACTTTTCAAAGTCGTGG
*
6966003 TGCCTCTGTTGAAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
1 TGCCTCTGTTG-AGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
6966068 TACTTTTCAAAGTCGTGG
65 TACTTTTCAAAGTCGTGG
* * * * *
6966086 TACCTCTGTTGAGAGGAGCAATTTAC-TTTCAAAAGTCGTTGAGTCTCTGTTTAGAGGAGC
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTGAGAGGAGC
6966146 TTCGGCAAAA
Statistics
Matches: 606, Mismatches: 24, Indels: 17
0.94 0.04 0.03
Matches are distributed among these distances:
81 6 0.01
82 280 0.46
83 300 0.50
84 20 0.03
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (82 bp):
TGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTT
ACTTTTCAAAGTCGTGG
Found at i:6965975 original size:289 final size:285
Alignment explanation
Indices: 6965425--6966145 Score: 1194
Period size: 289 Copynumber: 2.5 Consensus size: 285
6965415 AAAGTTCCGT
* *
6965425 TGCCTCTGTTTAGAGGAGCAATTTATCTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
1 TGCCTCTGTTGAGAGGAGCAATTTA-CTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
*
6965490 TACTTTTCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTC
65 TACTTTTCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTCGT--TGCCTC
*
6965555 TGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTATTTTT
128 TGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTATATTT
* *
6965620 TCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGA
193 CCAAAGTCGT-GTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTACCTCTGTTGA
*
6965685 GAGGAGCAATTTATTTTTTCAAAGTCGTGG
257 GAGGAGCAATTTA-CTTTTCAAAGTCGTGG
6965715 TGCCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTT
1 TGCCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTT
* *
6965780 ACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTAATTTCCAAAGTTCCGTTGCCTCT
66 ACTTTTCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTCCAAAG-T-CGTTGCCTCT
6965845 GTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTA-ATTTC
129 GTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTATATTTC
* *
6965909 CAAAGTTCCGT-TGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTACCTCTGTTG
194 CAAAG-T-CGTGTGCCTCTGTTGAGAGGAGCAATTTACTTTT-CAAAGTCGTGGTACCTCTGTTG
6965973 AGAGGAGCAATTTACTTTTCAAAGTCGTGG
256 AGAGGAGCAATTTACTTTTCAAAGTCGTGG
6966003 TGCCTCTGTTGAAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
1 TGCCTCTGTTG-AGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
* *
6966068 TACTTTTCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTCAAAAGTCGTTGAGTCTC
65 TACTTTTCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTCGTT--GCCTC
6966133 TGTTTAGAGGAGC
128 TGTTTAGAGGAGC
6966146 TTCGGCAAAA
Statistics
Matches: 408, Mismatches: 15, Indels: 17
0.93 0.03 0.04
Matches are distributed among these distances:
287 4 0.01
288 63 0.15
289 310 0.76
290 28 0.07
291 3 0.01
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (285 bp):
TGCCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTT
ACTTTTCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTCGTTGCCTCTGT
TTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTATATTTCCA
AAGTCGTGTGCCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTCGTGGTACCTCTGTTGAGAGG
AGCAATTTACTTTTCAAAGTCGTGG
Found at i:6966158 original size:1 final size:1
Alignment explanation
Indices: 6966152--6966256 Score: 84
Period size: 1 Copynumber: 105.0 Consensus size: 1
6966142 GAGCTTCGGC
* ** ** * **
6966152 AAAAAAAAAAAAAAAAAACAAAAAAAAAATCAAAAAAAAAATTAAAAAAATAAAAAAAAATCAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * ** *
6966217 AAATAAAAAACAAAAATAAAAAAAAATCAAAAAATAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6966257 TGTTGAGTTG
Statistics
Matches: 81, Mismatches: 23, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 81 1.00
ACGTcount: A:0.87, C:0.05, G:0.00, T:0.09
Consensus pattern (1 bp):
A
Found at i:6966189 original size:31 final size:30
Alignment explanation
Indices: 6966151--6966256 Score: 149
Period size: 31 Copynumber: 3.4 Consensus size: 30
6966141 GGAGCTTCGG
*
6966151 CAAAAAAAAAAAAAAAAAACAAAAAAAAAAT
1 CAAAAAAAAAAAAAAAAAA-TAAAAAAAAAT
*
6966182 CAAAAAAAAAATTAAAAAAATAAAAAAAAAT
1 CAAAAAAAAAA-AAAAAAAATAAAAAAAAAT
*
6966213 CAAAAAATAAAAAACAAAAATAAAAAAAAAT
1 CAAAAAA-AAAAAAAAAAAATAAAAAAAAAT
*
6966244 CAAAAAATAAAAA
1 CAAAAAAAAAAAA
6966257 TGTTGAGTTG
Statistics
Matches: 68, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
30 5 0.07
31 52 0.76
32 11 0.16
ACGTcount: A:0.86, C:0.06, G:0.00, T:0.08
Consensus pattern (30 bp):
CAAAAAAAAAAAAAAAAAATAAAAAAAAAT
Found at i:6966208 original size:39 final size:40
Alignment explanation
Indices: 6966154--6966256 Score: 120
Period size: 39 Copynumber: 2.6 Consensus size: 40
6966144 GCTTCGGCAA
* *
6966154 AAAAAAAAAAAAAAAACAAAAAAAAAATCAAAAA-AAAAAT
1 AAAAAAAAATAAAAAA-AAAAAAAAAATAAAAAACAAAAAT
* *
6966194 -TAAAAAAATAAAAAAAAATCAAAAAATAAAAAACAAAAAT
1 AAAAAAAAATAAAAAAAAA-AAAAAAATAAAAAACAAAAAT
* *
6966234 AAAAAAAAATCAAAAAATAAAAA
1 AAAAAAAAATAAAAAAAAAAAAA
6966257 TGTTGAGTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
38 3 0.06
39 25 0.48
40 9 0.17
41 15 0.29
ACGTcount: A:0.86, C:0.05, G:0.00, T:0.09
Consensus pattern (40 bp):
AAAAAAAAATAAAAAAAAAAAAAAAATAAAAAACAAAAAT
Found at i:6966481 original size:24 final size:23
Alignment explanation
Indices: 6966426--6966479 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 23
6966416 TTTTCTTTTG
6966426 TATTTTATGTATTCTATTATTAT
1 TATTTTATGTATTCTATTATTAT
6966449 TATTATTATGTATATCT-TTATTCATT
1 TATT-TTATGTAT-TCTATTATT-A-T
6966475 TATTT
1 TATTT
6966480 ATTTTTATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
23 4 0.15
24 13 0.48
25 5 0.19
26 5 0.19
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.65
Consensus pattern (23 bp):
TATTTTATGTATTCTATTATTAT
Done.