Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 57 of 93
Found at i:7204568 original size:124 final size:121
Alignment explanation
Indices: 7204398--7204668 Score: 319
Period size: 124 Copynumber: 2.2 Consensus size: 121
7204388 TTGAATGAGG
* * ** * * * *
7204398 TTATT-AAAGGCGTTGTTGGCCAAAAAGGCCTTAAATATTTCTTTACAAAAAATTGAATAGGATT
1 TTATTCAAA-GCGTTTTTGGCCAAAAACGTATTGAATATTTCCTTACAAAAAATTAAATAGAATT
* *
7204462 ATTCAAGGTGTTTCTAGCCAAAAACACCTTAAATAATCCCCTCTCAATTATTTTATGGA
65 ATGCAAGGTGTTTCTAGCAAAAAACACCTTAAATAATCCCCTC-CAATTATTTTA-GGA
* * *
7204521 TTATTCAAGGCGTTTTTTGCCAGAAAACGTATTGAATATTTCCTTACAAAAAATTAAATTGAATT
1 TTATTCAAAGCGTTTTTGGCCA-AAAACGTATTGAATATTTCCTTACAAAAAATTAAATAGAATT
* ** * * *
7204586 ATGCAATGTGTTTCTAGCAAAAAATGCCTTAAATAATCCTCTCCATTTTTTTTAGGA
65 ATGCAAGGTGTTTCTAGCAAAAAACACCTTAAATAATCCCCTCCAATTATTTTAGGA
*
7204643 TTATTCAAAGTGTTTTTGGCCAAAAA
1 TTATTCAAAGCGTTTTTGGCCAAAAA
7204669 TGCTTTCAAT
Statistics
Matches: 124, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
121 4 0.03
122 22 0.18
123 25 0.20
124 73 0.59
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (121 bp):
TTATTCAAAGCGTTTTTGGCCAAAAACGTATTGAATATTTCCTTACAAAAAATTAAATAGAATTA
TGCAAGGTGTTTCTAGCAAAAAACACCTTAAATAATCCCCTCCAATTATTTTAGGA
Found at i:7209581 original size:62 final size:61
Alignment explanation
Indices: 7209513--7209811 Score: 194
Period size: 62 Copynumber: 4.8 Consensus size: 61
7209503 AAAAAAGGCA
* *
7209513 TTGAATAATCCCTAATACAAAATTAAAAGGGATTATTCAAGGCATTTTTTGCCAAAAATATC
1 TTGAATAATCCCTAATA-AAAATTAAAAGGGATTATTCAAGGCATTTTTGGCCAAAAATACC
* * * * * * *
7209575 TTGAATAATCACTTCATAAAAA-TAGAAGAGGATTATTGAAGAC-GTTTTGGCCAAAAATAGC
1 TTGAATAATC-CCTAATAAAAATTAAAAG-GGATTATTCAAGGCATTTTTGGCCAAAAATACC
* * ** * * *
7209636 TTCAATAATCCC-ATTAAATTTTATAAGGGGATTATTCAAGGCATTTTATGGGCAAAAATGCC
1 TTGAATAATCCCTAATAAAAATTA-AAAGGGATTATTCAAGGCATTTT-TGGCCAAAAATACC
* * *** * *
7209698 TTGAATAATTCCTAAATTCTAAAATTTTTTAGAGATTATTCAAGGCATTTTTGTCCAAAAACT-C
1 TTGAATAATCCCT-AA---TAAAAATTAAAAGGGATTATTCAAGGCATTTTTGGCCAAAAA-TAC
7209762 C
61 C
* * * * * *
7209763 TTAAATAATTACCTCATAAAAATT-GAAGTGGATTATTGAAGGCGTTTTT
1 TTGAATAA-TCCCTAATAAAAATTAAAAG-GGATTATTCAAGGCATTTTT
7209812 TACTAGAAAC
Statistics
Matches: 181, Mismatches: 42, Indels: 28
0.72 0.17 0.11
Matches are distributed among these distances:
59 4 0.02
60 15 0.08
61 36 0.20
62 71 0.39
63 5 0.03
64 1 0.01
65 18 0.10
66 24 0.13
67 7 0.04
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.34
Consensus pattern (61 bp):
TTGAATAATCCCTAATAAAAATTAAAAGGGATTATTCAAGGCATTTTTGGCCAAAAATACC
Found at i:7214881 original size:13 final size:13
Alignment explanation
Indices: 7214863--7214889 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7214853 AACGATTAAA
7214863 TAAAAATCAAAAT
1 TAAAAATCAAAAT
7214876 TAAAAATCAAAAT
1 TAAAAATCAAAAT
7214889 T
1 T
7214890 GATAGATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (13 bp):
TAAAAATCAAAAT
Found at i:7215146 original size:23 final size:22
Alignment explanation
Indices: 7215121--7215162 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7215111 ATTAAATCAT
7215121 TTTTA-AAAAACAATTTCATAAA
1 TTTTACAAAAA-AATTTCATAAA
*
7215143 TTTTACTAAAAAATTTCATA
1 TTTTACAAAAAAATTTCATA
7215163 TAAAGTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTTACAAAAAAATTTCATAAA
Found at i:7216087 original size:152 final size:153
Alignment explanation
Indices: 7215906--7216212 Score: 415
Period size: 152 Copynumber: 2.0 Consensus size: 153
7215896 AAGTATGAAC
* * * * * **
7215906 TCTAAAAATATTAAAAATGAACGATATAAATA-TTCTTATGAATTTTAAGAAATAACCAATTTAC
1 TCTAAAAATATTAAAAATGAACAACATAAATACCT-TTAT-AAATTTAAAAAATAAAAAATTTAC
* *
7215970 CTTTAAATTTTTAGCATT-TTTATTTATTTAATAAAAATTATTTGTCATTAAATATATAGC-TTT
64 ATTTAAATTTCTAGCATTATTTATTTATTTAATAAAAATTATTTGTCATTAAATATATAGCTTTT
7216033 TATT-AGTTAGTTATTTAAATTTAAA
129 TATTCA-TTAGTTATTTAAATTTAAA
* * * *
7216058 TCTAAAAGTGTTAAAAATGAATAACATAAATACCTTTATAAATTTAAAAAATAAAAAATTTATAT
1 TCTAAAAATATTAAAAATGAACAACATAAATACCTTTATAAATTTAAAAAATAAAAAATTTACAT
* **
7216123 TTCAATTTCTAGCATTATTTATTTATTTAATAATTATTATTTGTCATTAAATATATAGCTTTTTA
66 TTAAATTTCTAGCATTATTTATTTATTTAATAAAAATTATTTGTCATTAAATATATAGCTTTTTA
7216188 TTCATTAGTTATTTAAATTTAAA
131 TTCATTAGTTATTTAAATTTAAA
7216211 TC
1 TC
7216213 AATTTAAAAT
Statistics
Matches: 135, Mismatches: 16, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
151 34 0.25
152 71 0.53
153 29 0.21
154 1 0.01
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (153 bp):
TCTAAAAATATTAAAAATGAACAACATAAATACCTTTATAAATTTAAAAAATAAAAAATTTACAT
TTAAATTTCTAGCATTATTTATTTATTTAATAAAAATTATTTGTCATTAAATATATAGCTTTTTA
TTCATTAGTTATTTAAATTTAAA
Found at i:7216251 original size:16 final size:16
Alignment explanation
Indices: 7216200--7216252 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
7216190 CATTAGTTAT
* *
7216200 TTAAATTTAAATCAAT
1 TTAAATTTATATCAAA
*
7216216 TTAAAATT-TA-CAAA
1 TTAAATTTATATCAAA
*
7216230 TAAAATTTATATCAAA
1 TTAAATTTATATCAAA
7216246 TTAAATT
1 TTAAATT
7216253 ACATTAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
14 9 0.31
15 3 0.10
16 17 0.59
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAAATTTATATCAAA
Found at i:7216705 original size:23 final size:23
Alignment explanation
Indices: 7216658--7216707 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
7216648 ATTTTAGATT
*
7216658 AATTAAAATTAAAGTTCATATAA
1 AATTAAAATTAAAGTTCATAAAA
7216681 AATTATAAATTAAA-TT-ATCAAAA
1 AATTA-AAATTAAAGTTCAT-AAAA
7216704 AATT
1 AATT
7216708 GTTAAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 2 0.08
23 14 0.58
24 8 0.33
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (23 bp):
AATTAAAATTAAAGTTCATAAAA
Found at i:7217365 original size:34 final size:34
Alignment explanation
Indices: 7217276--7217365 Score: 78
Period size: 34 Copynumber: 2.6 Consensus size: 34
7217266 AAAACTTTTT
*
7217276 GGATATCTATTTTCAAGAAGTCTTGAGTCTTCTCA
1 GGATATATATTTTCAAGAAG-CTTGAGTCTTCTCA
* * * * *
7217311 AGA-ATGA-ATATCCAAAAAGCTTTATGTCTTCTC-
1 GGATAT-ATATTTTCAAGAAGCTTGA-GTCTTCTCA
7217344 GGATATATATTTTCAAGAAGCT
1 GGATATATATTTTCAAGAAGCT
7217366 CGATTTCGCT
Statistics
Matches: 41, Mismatches: 10, Indels: 9
0.68 0.17 0.15
Matches are distributed among these distances:
33 7 0.17
34 32 0.78
35 2 0.05
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (34 bp):
GGATATATATTTTCAAGAAGCTTGAGTCTTCTCA
Found at i:7217915 original size:24 final size:24
Alignment explanation
Indices: 7217892--7217934 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
7217882 ATTTTAGTAT
7217892 TATTTATTTTA---AAATTAAATG
1 TATTTATTTTATTTAAATTAAATG
7217913 TATTTATTTTATTTAAATTAAA
1 TATTTATTTTATTTAAATTAAA
7217935 ATTAAAATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.58
24 8 0.42
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
TATTTATTTTATTTAAATTAAATG
Found at i:7218077 original size:33 final size:34
Alignment explanation
Indices: 7218040--7218112 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 34
7218030 AAAAAATATA
7218040 ATTCTCGAAAATTAATTTTCAAGAATTA-ATTGC
1 ATTCTCGAAAATTAATTTTCAAGAATTATATTGC
* *
7218073 ATTCTCGAAAATTCATTTTCGAGAATTATATTGC
1 ATTCTCGAAAATTAATTTTCAAGAATTATATTGC
*
7218107 TTTCTC
1 ATTCTC
7218113 ATAAATGGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 26 0.72
34 10 0.28
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (34 bp):
ATTCTCGAAAATTAATTTTCAAGAATTATATTGC
Found at i:7218302 original size:21 final size:21
Alignment explanation
Indices: 7218256--7218296 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
7218246 AATTTTTGGA
7218256 AGAAAATTTTAAGGGTGTATAG
1 AGAAAATTTT-AGGGTGTATAG
7218278 AGAAAATTTT-GGAGTGTAT
1 AGAAAATTTTAGG-GTGTAT
7218297 TTAGAAGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 6 0.33
22 10 0.56
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.34
Consensus pattern (21 bp):
AGAAAATTTTAGGGTGTATAG
Found at i:7218963 original size:62 final size:61
Alignment explanation
Indices: 7218829--7218991 Score: 188
Period size: 62 Copynumber: 2.6 Consensus size: 61
7218819 GAAAAGGAAC
* *
7218829 ATTCAAGGTGTTTTTGCCTAGAAAATGCCTTAAATAATCCTTTACAAAAAATTGAATGAGGTT
1 ATTCAAGGTGTTTTGGCC-A-AAAATACCTTAAATAATCCTTTACAAAAAATTGAATGAGGTT
* * *
7218892 A-TGAAGGTGTTATTGGCCAAAAATACCTTACAT-ATTCTCTTACAAAAAATTGAAT-AGGGTT
1 ATTCAAGGTGTT-TTGGCCAAAAATACCTTAAATAATCCT-TTACAAAAAATTGAATGA-GGTT
* *
7218953 ATTCAAGGTGTTTCTGGCCAAAAACACCTTGAATAATCC
1 ATTCAAGGTGTTT-TGGCCAAAAATACCTTAAATAATCC
7218992 CCTCTCAATT
Statistics
Matches: 84, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
60 5 0.06
61 34 0.40
62 36 0.43
63 9 0.11
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (61 bp):
ATTCAAGGTGTTTTGGCCAAAAATACCTTAAATAATCCTTTACAAAAAATTGAATGAGGTT
Found at i:7219309 original size:60 final size:60
Alignment explanation
Indices: 7219075--7219334 Score: 212
Period size: 60 Copynumber: 4.3 Consensus size: 60
7219065 TTGAATTGGG
* * * *
7219075 TTATTAAAGGTATTTCTGATAAAAAAATGCCTTT-AATAATCCTTTC-AATTTTTTACTAGGGAA
1 TTATTCAAGGTATTTTTGA-CAAAAAATG-CTTTGAATAATCCTTCCTAATTTTTTA-TA-GG-A
* * * *
7219138 TTATTCAAGGCATTTTTGACGAAAAATGCCTTGAATAATCCCTT-CTAATTTTTT-TGGGGA
1 TTATTCAAGGTATTTTTGACAAAAAATGCTTTGAATAAT-CCTTCCTAATTTTTTAT-AGGA
* * *
7219198 TTATTCAAGGTATTGTTGCCCAGAAAATAT-C-TTGAATAAT-CTTCCTCATTTTTT-TAGGA
1 TTATTCAAGGTATTTTTG-ACA-AAAA-ATGCTTTGAATAATCCTTCCTAATTTTTTATAGGA
* * * * *
7219257 TTATTCAAAGTGTTTTTGACAAAAAATGCTTTCAATAATCCCTTCCAAATTTTTTATGGGA
1 TTATTCAAGGTATTTTTGACAAAAAATGCTTTGAATAAT-CCTTCCTAATTTTTTATAGGA
*
7219318 TTATTCAAGGCATTTTT
1 TTATTCAAGGTATTTTT
7219335 ACCCAGCAAA
Statistics
Matches: 160, Mismatches: 24, Indels: 28
0.75 0.11 0.13
Matches are distributed among these distances:
56 2 0.01
57 5 0.03
58 10 0.06
59 21 0.13
60 39 0.24
61 34 0.21
62 19 0.12
63 30 0.19
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (60 bp):
TTATTCAAGGTATTTTTGACAAAAAATGCTTTGAATAATCCTTCCTAATTTTTTATAGGA
Found at i:7219334 original size:61 final size:60
Alignment explanation
Indices: 7219096--7219334 Score: 215
Period size: 61 Copynumber: 4.0 Consensus size: 60
7219086 ATTTCTGATA
*
7219096 AAAAAATGCCTTT-AATAATCCTTTC-AATTTTTTACTAGGGAATTATTCAAGGCATTTTTGAC
1 AAAAAATG-CTTTGAATAATCCTTCCTAATTTTTT--TAGGG-ATTATTCAAGGCATTTTTGAC
* * * * * *
7219158 GAAAAATGCCTTGAATAATCCCTT-CTAATTTTTTTGGGGATTATTCAAGGTATTGTTGCCC
1 AAAAAATGCTTTGAATAAT-CCTTCCTAATTTTTTTAGGGATTATTCAAGGCATTTTTG-AC
* * **
7219219 AGAAAATAT-C-TTGAATAAT-CTTCCTCATTTTTTTA-GGATTATTCAAAGTGTTTTTGAC
1 A-AAAA-ATGCTTTGAATAATCCTTCCTAATTTTTTTAGGGATTATTCAAGGCATTTTTGAC
* *
7219277 AAAAAATGCTTTCAATAATCCCTTCC-AAATTTTTTATGGGATTATTCAAGGCATTTTT
1 AAAAAATGCTTTGAATAAT-CCTTCCTAATTTTTTTA-GGGATTATTCAAGGCATTTTT
7219335 ACCCAGCAAA
Statistics
Matches: 145, Mismatches: 19, Indels: 27
0.76 0.10 0.14
Matches are distributed among these distances:
56 2 0.01
57 5 0.03
58 10 0.07
59 29 0.20
60 32 0.22
61 34 0.23
62 19 0.13
63 14 0.10
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (60 bp):
AAAAAATGCTTTGAATAATCCTTCCTAATTTTTTTAGGGATTATTCAAGGCATTTTTGAC
Found at i:7226382 original size:62 final size:62
Alignment explanation
Indices: 7226278--7226985 Score: 273
Period size: 62 Copynumber: 11.3 Consensus size: 62
7226268 TCCATCCTAG
*
7226278 AAAACGCCTTGAATAAT-CCCTAATAAAAAATTAGAGAGGATTATTCAAGGCATTTTTGGTCA
1 AAAACGCCTTGAATAATCCCCTAAT-AAAAATTAAAGAGGATTATTCAAGGCATTTTTGGTCA
* * * * **
7226340 AAAACACCTTGAATAATCCCCTAATAAAAACTAAAGATGATTATTGAAGGCATTTTAAGTCA
1 AAAACGCCTTGAATAATCCCCTAATAAAAATTAAAGAGGATTATTCAAGGCATTTTTGGTCA
* * * * * * * **
7226402 TAAATGCCTTGAATAA-CCCC-ACT-CAATTTTATGAGTAGATTATTCAAGGCATTTTCTAGGAA
1 AAAACGCCTTGAATAATCCCCTAATAAAAATTAAAGAG--GATTATTCAAGGCATTTT-T-GGTC
7226464 A
62 A
* * * *
7226465 AAAAGGTCTTGAATAATCCCC-AATACAAAATTGAAAGA-GATTAATCAAGGCATTCTTGG-CAA
1 AAAACGCCTTGAATAATCCCCTAATA-AAAATT-AAAGAGGATTATTCAAGGCATTTTTGGTC-A
* * * * * **
7226527 AAAATGCCTTGAATAATCACCTTATAAAAATTGAAAG-GGATTATTGAAGGTATTTTTGACCA
1 AAAACGCCTTGAATAATCCCCTAATAAAAATT-AAAGAGGATTATTCAAGGCATTTTTGGTCA
* * * ** * * * *
7226589 AAAATGCCTTCAATAA--CCCTATTAAATTTTATGAGGGGATTATTTAAGGCATTTTATGGGCA
1 AAAACGCCTTGAATAATCCCCTAATAAAAATTA-AAGAGGATTATTCAAGGCATTTT-TGGTCA
* * * * ** *
7226651 AAAATGCATTGAATAAT-TCCTAAATTTCAAAATTTTTTTAGA-GATTTTTCAAGGCATTTTT-G
1 AAAACGCCTTGAATAATCCCCT-AA--T-AAAA--ATTAAAGAGGATTATTCAAGGCATTTTTGG
*
7226713 TCCT
60 T-CA
* * * * * * * ** *
7226717 AAAATGCCTTAAATAATCACCTCATAAAAATTGAAGTGGATTATTGAAGATATTTTTGGCCA
1 AAAACGCCTTGAATAATCCCCTAATAAAAATTAAAGAGGATTATTCAAGGCATTTTTGGTCA
* * * * ** *** * * *
7226779 GAAATGCATTGAATAA-CCTCC-ATTAAATTTTTTGTTCTGGGGATTATTCAAGGCGTTTTTGGG
1 AAAACGCCTTGAATAATCC-CCTAATAAA---AAT-TAAAGAGGATTATTCAAGGCATTTTTGGT
7226842 CA
61 CA
** ** * *** * * *
7226844 AAAATACCTTG-ATAATCTACTAAAAAAAATGGTAGGGGATTATTGAAGGCATTTTTGGTAA
1 AAAACGCCTTGAATAATCCCCTAATAAAAATTAAAGAGGATTATTCAAGGCATTTTTGGTCA
** * * * * * *
7226905 AAAATACTTTGAATAATCCCTTACA-AAAAATTTAATAGAGG-TTATTCAAGGCGTTTCTAGCCA
1 AAAACGCCTTGAATAATCCCCTA-ATAAAAA-TTAA-AGAGGATTATTCAAGGCATTTTTGGTCA
* *
7226968 AAAACACCTTCAATAATC
1 AAAACGCCTTGAATAATC
7226986 TCTTCATAAA
Statistics
Matches: 478, Mismatches: 130, Indels: 75
0.70 0.19 0.11
Matches are distributed among these distances:
59 7 0.01
60 13 0.03
61 80 0.17
62 187 0.39
63 68 0.14
64 34 0.07
65 36 0.08
66 23 0.05
67 25 0.05
68 2 0.00
69 3 0.01
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (62 bp):
AAAACGCCTTGAATAATCCCCTAATAAAAATTAAAGAGGATTATTCAAGGCATTTTTGGTCA
Found at i:7226532 original size:125 final size:122
Alignment explanation
Indices: 7226316--7226542 Score: 280
Period size: 125 Copynumber: 1.8 Consensus size: 122
7226306 AATTAGAGAG
**
7226316 GATTATTCAAGGCATTTTTGGTCAAAAACACCTTGAATAATCCCCTAATAAAAACTAAAGATGAT
1 GATTATTCAAGGCATTTTTGGAAAAAAACACCTTGAATAATCCCCTAATAAAAACTAAAGATGAT
* * * *
7226381 TATTGAAGGCATTTTAAGTCATAAATGCCTTGAATAACCCCACTCAATTTTATGAGTA
66 TAATCAAGGCATTTT-AGGCAAAAATGCCTTGAATAACCCCACTCAATTTTATGAGTA
*** *
7226439 GATTATTCAAGGCATTTTCTAGGAAAAAAAGGTCTTGAATAATCCCC-AATACAAAATTGAAAGA
1 GATTATTCAAGGCATTTT-T-GGAAAAAAACACCTTGAATAATCCCCTAATA-AAAACT-AAAGA
7226503 -GATTAATCAAGGCATTCTT-GGCAAAAAATGCCTTGAATAA
62 TGATTAATCAAGGCATT-TTAGGC-AAAAATGCCTTGAATAA
7226543 TCACCTTATA
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
123 18 0.20
124 7 0.08
125 56 0.64
126 7 0.08
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.30
Consensus pattern (122 bp):
GATTATTCAAGGCATTTTTGGAAAAAAACACCTTGAATAATCCCCTAATAAAAACTAAAGATGAT
TAATCAAGGCATTTTAGGCAAAAATGCCTTGAATAACCCCACTCAATTTTATGAGTA
Found at i:7226606 original size:187 final size:185
Alignment explanation
Indices: 7226285--7226809 Score: 513
Period size: 187 Copynumber: 2.8 Consensus size: 185
7226275 TAGAAAACGC
* * *
7226285 CTTGAATAATCCCTAATAAAAAATTAGAGAGGATTATTCAAGGCATTTTTGGTCAAAAACA--CC
1 CTTGAATAATCCCAAATACAAAATTAAAGA-GATTATTCAAGGCATTTTTGG-CAAAAA-ATGCC
* * * * * * *
7226348 TTGAATAATCCCCTAATAAAAACT-AAAGATGATTATTGAAGGCA-TTTTAAGTCATAAATGCCT
63 TTGAATAATCACCTAATAAAAATTGAAAGAGGATTATTGAAGGTATTTTTGA-CCAAAAATGCCT
* * *
7226411 TGAATAACCCCACTCAATTTTATGAGTAGATTATTCAAGGCATTTTCTAGGAAAAAAAGG
127 TGAATAACCCCACTAAATTTTATGAGGAGATTATTCAAGGCATTTTAT-GGAAAAAAAGG
* * *
7226471 TCTTGAATAATCCCCAATACAAAATTGAAAGAGATTAATCAAGGCATTCTTGGCAAAAAATGCCT
1 -CTTGAATAATCCCAAATACAAAATT-AAAGAGATTATTCAAGGCATTTTTGGCAAAAAATGCCT
* *
7226536 TGAATAATCACCTTATAAAAATTGAAAG-GGATTATTGAAGGTATTTTTGACCAAAAATGCCTTC
64 TGAATAATCACCTAATAAAAATTGAAAGAGGATTATTGAAGGTATTTTTGACCAAAAATGCCTTG
* * * * ** *
7226600 AATAACCCTATTAAATTTTATGAGGGGATTATTTAAGGCATTTTATGGGCAAAAATG
129 AATAACCCCACTAAATTTTATGAGGAGATTATTCAAGGCATTTTATGGAAAAAAAGG
* * ** * * **
7226657 CATTGAATAATTCCTAAATTTCAAAATTTTTTTAGAGATTTTTCAAGGCATTTTTGTCCTAAAAT
1 C-TTGAATAA-TCCCAAA-TACAAAA---TTAAAGAGATTATTCAAGGCATTTTTGGCAAAAAAT
* * * * * *
7226722 GCCTTAAATAATCACCTCATAAAAATTG-AAGTGGATTATTGAAGATATTTTTGGCCAGAAATGC
60 GCCTTGAATAATCACCTAATAAAAATTGAAAGAGGATTATTGAAGGTATTTTTGACCAAAAATGC
* *
7226786 ATTGAATAACCTCCATTAAATTTT
125 CTTGAATAACC-CCACTAAATTTT
7226810 TTGTTCTGGG
Statistics
Matches: 282, Mismatches: 43, Indels: 22
0.81 0.12 0.06
Matches are distributed among these distances:
185 2 0.01
186 22 0.08
187 133 0.47
188 19 0.07
189 3 0.01
190 90 0.32
191 13 0.05
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (185 bp):
CTTGAATAATCCCAAATACAAAATTAAAGAGATTATTCAAGGCATTTTTGGCAAAAAATGCCTTG
AATAATCACCTAATAAAAATTGAAAGAGGATTATTGAAGGTATTTTTGACCAAAAATGCCTTGAA
TAACCCCACTAAATTTTATGAGGAGATTATTCAAGGCATTTTATGGAAAAAAAGG
Found at i:7226760 original size:190 final size:191
Alignment explanation
Indices: 7226500--7226848 Score: 479
Period size: 190 Copynumber: 1.8 Consensus size: 191
7226490 CAAAATTGAA
* *
7226500 AGAGATTAATCAAGGCATTCTTGGCAAAAAATGCCTTGAATAATCACCTTATAAAAATTGAAAGG
1 AGAGATTAATCAAGGCATTCTTGGCAAAAAATGCCTTAAATAATCACCTCATAAAAATTGAAAGG
* * *
7226565 GATTATTGAAGGTATTTTTGACCAAAAATGCCTTCAATAACC-CTATTAAATTTTATG-AGGGGA
66 GATTATTGAAGATATTTTTGACCAAAAATGCATTCAATAACCTCCATTAAATTTTATGTAGGGGA
*
7226628 TTATTTAAGGCATTTTATGGGCAAAAATGCATTGAATAATTCCTAAATTTCAAAATTTTTTT
131 TTATTCAAGGCATTTT-TGGGCAAAAATGCATTGAATAATTCCTAAATTTCAAAATTTTTTT
** * * **
7226690 AGAGATTTTTCAAGGCATTTTTGTCCTAAAATGCCTTAAATAATCACCTCATAAAAATTG-AAGT
1 AGAGATTAATCAAGGCATTCTTGGCAAAAAATGCCTTAAATAATCACCTCATAAAAATTGAAAG-
* * * * *
7226754 GGATTATTGAAGATATTTTTGGCCAGAAATGCATTGAATAACCTCCATTAAATTTTTTGTTCTGG
65 GGATTATTGAAGATATTTTTGACCAAAAATGCATTCAATAACCTCCATTAAATTTTATG-T-AGG
*
7226819 GGATTATTCAAGGCGTTTTTGGGCAAAAAT
128 GGATTATTCAAGGCATTTTTGGGCAAAAAT
7226849 ACCTTGATAA
Statistics
Matches: 136, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
189 3 0.02
190 90 0.66
191 13 0.10
193 11 0.08
194 19 0.14
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36
Consensus pattern (191 bp):
AGAGATTAATCAAGGCATTCTTGGCAAAAAATGCCTTAAATAATCACCTCATAAAAATTGAAAGG
GATTATTGAAGATATTTTTGACCAAAAATGCATTCAATAACCTCCATTAAATTTTATGTAGGGGA
TTATTCAAGGCATTTTTGGGCAAAAATGCATTGAATAATTCCTAAATTTCAAAATTTTTTT
Found at i:7231572 original size:20 final size:21
Alignment explanation
Indices: 7231549--7231593 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
7231539 TATTCAACCA
7231549 ATTTATTTAACT-AATTAAAT
1 ATTTATTTAACTGAATTAAAT
* *
7231569 ATTTATTTAATTGACTTAAAT
1 ATTTATTTAACTGAATTAAAT
7231590 ATTT
1 ATTT
7231594 TCATCAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (21 bp):
ATTTATTTAACTGAATTAAAT
Found at i:7232841 original size:2 final size:2
Alignment explanation
Indices: 7232834--7232886 Score: 70
Period size: 2 Copynumber: 25.5 Consensus size: 2
7232824 CTCTTTTGTA
*
7232834 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT CT AT CAT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT -AT
*
7232878 TT AT AT AT A
1 AT AT AT AT A
7232887 AAAGTATTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
2 41 0.91
3 4 0.09
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7233174 original size:157 final size:152
Alignment explanation
Indices: 7232893--7233208 Score: 402
Period size: 152 Copynumber: 2.0 Consensus size: 152
7232883 TATAAAAGTA
* * * * *
7232893 TTAACTCTAAAAATATTAAAAGTAAATGACATAATACCTTTATGAATTTTAAGAAATAACAAATT
1 TTAAATCTAAAAATATTAAAAATAAATAACATAATACCTTTATAAATTTTAAAAAATAACAAATT
7232958 TACTTTTAAATTTATAGTATTTTTATTTATTTAATAAAGATTATTTGTCATTAAATATATAAC-T
66 TACTTTTAAATTTATAGTATTTTTATTTATTTAATAAAGATTATTTGTCATTAAATATATAACTT
7233022 TTTATTAGTTAGTTATATAAAT
131 TTTATTAGTTAGTTATATAAAT
* * *
7233044 TTAAATCTAAAAGTGTTAAAAATGAATAACATAAATACCTTTATAAATTTTAAAAAATAACAAAT
1 TTAAATCTAAAAATATTAAAAATAAATAACAT-AATACCTTTATAAATTTTAAAAAATAACAAAT
* * * * **
7233109 TTA-TATTTCATTTTCTAGCATTATTTATTTATTTATTTAGTAATTATTATTTGTCATTAAATAT
65 TTACT-TTTAAATTTATAG---TA-TT-TTTATTTATTTAATAAAGATTATTTGTCATTAAATAT
* * *
7233173 ATAGCTTTTTATTCGTTAGTTATTTAAAT
124 ATAACTTTTTATTAGTTAGTTATATAAAT
7233202 TTAAATC
1 TTAAATC
7233209 AATTAAAAAT
Statistics
Matches: 140, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
151 27 0.19
152 43 0.31
155 2 0.01
156 2 0.01
157 38 0.27
158 28 0.20
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.46
Consensus pattern (152 bp):
TTAAATCTAAAAATATTAAAAATAAATAACATAATACCTTTATAAATTTTAAAAAATAACAAATT
TACTTTTAAATTTATAGTATTTTTATTTATTTAATAAAGATTATTTGTCATTAAATATATAACTT
TTTATTAGTTAGTTATATAAAT
Found at i:7234910 original size:25 final size:25
Alignment explanation
Indices: 7234872--7234919 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
7234862 AGCACATCAA
7234872 ATTTATTTATTTTAAAATTAAATGT
1 ATTTATTTATTTTAAAATTAAATGT
*
7234897 ATTTATTT-TATTTAAATTTAAAT
1 ATTTATTTAT-TTTAAAATTAAAT
7234920 TAAATGTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATTTATTTATTTTAAAATTAAATGT
Found at i:7235067 original size:34 final size:34
Alignment explanation
Indices: 7235023--7235100 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
7235013 AAAAAATATA
* *
7235023 ATTCTCGAAAATTGATTT-TCAAGAATTATATTGC
1 ATTCTAGAAAATTCATTTCT-AAGAATTATATTGC
*
7235057 ATTCTAGAAAATTCATTTCTGAGAATTATATTGC
1 ATTCTAGAAAATTCATTTCTAAGAATTATATTGC
*
7235091 TTTCTCAGAA
1 ATTCT-AGAA
7235101 TTGGATTACC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 33 0.87
35 5 0.13
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.41
Consensus pattern (34 bp):
ATTCTAGAAAATTCATTTCTAAGAATTATATTGC
Found at i:7235100 original size:19 final size:18
Alignment explanation
Indices: 7235039--7235102 Score: 55
Period size: 19 Copynumber: 3.6 Consensus size: 18
7235029 GAAAATTGAT
*
7235039 TTTCAAGAATTATATTGC
1 TTTCTAGAATTATATTGC
*
7235057 ATTCTAGAA--A-ATT-C
1 TTTCTAGAATTATATTGC
7235071 ATTTCTGAGAATTATATTGC
1 -TTTCT-AGAATTATATTGC
7235091 TTTCTCAGAATT
1 TTTCT-AGAATT
7235103 GGATTACCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 11
0.71 0.08 0.22
Matches are distributed among these distances:
14 1 0.03
15 7 0.19
16 5 0.14
18 8 0.22
19 14 0.39
20 1 0.03
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (18 bp):
TTTCTAGAATTATATTGC
Found at i:7235747 original size:61 final size:61
Alignment explanation
Indices: 7235595--7235812 Score: 217
Period size: 62 Copynumber: 3.5 Consensus size: 61
7235585 AATTTCCTCC
* ** * *
7235595 CATTTTTATGAAGGGATTATTCAAGGTGTTTTTGATAAAAAAATGCCTTCAATAATCATTTT
1 CATTTTTATGAAGGGATTATTTAAGGTGTTTTTGA-CCAAAAACGCCTTCAATAATCCTTTT
* * * *
7235657 CAATTTTATAGAGGGGATTA-TTAATGGTG-TTTTGGCCAAAAACGCCTTCAATATTTCCTTTT
1 CATTTTTAT-GAAGGGATTATTTAA-GGTGTTTTTGACCAAAAACGCCTTCAATA-ATCCTTTT
* * * * * *
7235719 CATTTTTATGAAAGGATGATTTAAGGTGTTTTTTACCAAAAACACCTTGAATAATCCTCTT
1 CATTTTTATGAAGGGATTATTTAAGGTGTTTTTGACCAAAAACGCCTTCAATAATCCTTTT
* *
7235780 CAGTTTTTA-GAAGGGAATATTAAAGGTGTTTTT
1 CA-TTTTTATGAAGGGATTATTTAAGGTGTTTTT
7235813 TTTTTTTTTT
Statistics
Matches: 127, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
61 54 0.43
62 60 0.47
63 13 0.10
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (61 bp):
CATTTTTATGAAGGGATTATTTAAGGTGTTTTTGACCAAAAACGCCTTCAATAATCCTTTT
Found at i:7235814 original size:62 final size:61
Alignment explanation
Indices: 7235595--7235813 Score: 203
Period size: 61 Copynumber: 3.6 Consensus size: 61
7235585 AATTTCCTCC
* * * * *
7235595 CATTTTTATGAAGGGATTATTCAAGGTGTTTTTGATA-AAAAAATGCCTTCAATAATCATTTT
1 CATTTTTATGAAGGGAATATTAAAGGTGTTTTT--TACCAAAAACGCCTTCAATAATCCTTTT
* * * * ** *
7235657 CAATTTTATAGAGGGGATTATTAATGGTG-TTTTGGCCAAAAACGCCTTCAATATTTCCTTTT
1 CATTTTTAT-GAAGGGAATATTAAAGGTGTTTTTTACCAAAAACGCCTTCAATA-ATCCTTTT
* * * * *
7235719 CATTTTTATGAAAGG-ATGATTTAAGGTGTTTTTTACCAAAAACACCTTGAATAATCCTCTT
1 CATTTTTATGAAGGGAAT-ATTAAAGGTGTTTTTTACCAAAAACGCCTTCAATAATCCTTTT
7235780 CAGTTTTTA-GAAGGGAATATTAAAGGTGTTTTTT
1 CA-TTTTTATGAAGGGAATATTAAAGGTGTTTTTT
7235814 TTTTTTTTTG
Statistics
Matches: 126, Mismatches: 24, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
60 1 0.01
61 55 0.44
62 54 0.43
63 16 0.13
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.41
Consensus pattern (61 bp):
CATTTTTATGAAGGGAATATTAAAGGTGTTTTTTACCAAAAACGCCTTCAATAATCCTTTT
Found at i:7236186 original size:63 final size:62
Alignment explanation
Indices: 7236114--7236279 Score: 190
Period size: 62 Copynumber: 2.7 Consensus size: 62
7236104 TATAAAGGAA
* * * * *
7236114 TATTCAAGGCATTTTTGCCTAGAAAATACCTTGAATAATCCTTTACAAAAAATTGATTGGGGT
1 TATTCAAGGCATTTTTGCCTA-AAAACACCTTAAATAATCCCTTACAAAAAATTGAATAGGGT
* * * ** *
7236177 TATTGAAGGCGTTGTTGGTTAAAAACACCTTAAATATTCCCTTACAAAAAATTGAATAGGGT
1 TATTCAAGGCATTTTTGCCTAAAAACACCTTAAATAATCCCTTACAAAAAATTGAATAGGGT
* *
7236239 TATTCAAGGTATTTCTGGCC-AAAAACACCTTAAATAATCCC
1 TATTCAAGGCATTT-TTGCCTAAAAACACCTTAAATAATCCC
7236280 CTCTCAATTA
Statistics
Matches: 83, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
62 65 0.78
63 18 0.22
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (62 bp):
TATTCAAGGCATTTTTGCCTAAAAACACCTTAAATAATCCCTTACAAAAAATTGAATAGGGT
Found at i:7236512 original size:186 final size:181
Alignment explanation
Indices: 7235894--7236522 Score: 497
Period size: 186 Copynumber: 3.4 Consensus size: 181
7235884 AGCTAAAAAT
** * * *
7235894 CCTTCAATAATCC-TCTCCCCTTTTTT-TGGATTATTCAAGGTATTTTTGATCAGAAAATATCTT
1 CCTTCAATAATCCAT-TCCAATTTTTTATGGATTATTCAAGGCATTTTT-ACCAGAAAATACCTT
* *
7235957 AAATATTT-TCTTACAAAAAATTGAATGAGGTTATTCAAGGCATTTCTAGCCAAAAACACTTTCA
64 GAATATTTCT-TTACAAAAAATTGAATTAGGTTATTCAAGGCATTTCTAGCCAAAAACACTTT-A
* *
7236021 ATAATCCCCTTCAATATTTTTACTAAGGGATTATTCAAGGA-GTTTTTGACCAATAACG
127 ATAAT-CCCTTCAAT-TTTTAACT-AGGGATTATTCAAGGATG-TTTTGACCAAAAACG
* * * * *
7236079 CCTTGAATAACCTCATT-CATTTTTTTATAAAGGAATATTCAAGGCATTTTTGCCTAGAAAATAC
1 CCTTCAATAATC-CATTCCAATTTTTTAT---GGATTATTCAAGGCATTTTTACC-AGAAAATAC
* * * * * * **
7236143 CTTGAATAATCCTTTACAAAAAATTG-ATTGGGGTTATTGAAGGCGTTGT-TGGTTAAAAACACC
61 CTTGAATATTTCTTTACAAAAAATTGAATT-AGGTTATTCAAGGCATT-TCTAGCCAAAAACA-C
* * ** * * * *
7236206 TTAAATATTCCCTTACAAAAAATTGAA-TAGGG-TTATTCAAGGTAT-TTCTGGCCAAAAACA
123 TTTAATAATCCCTT-C--AATTTTTAACTAGGGATTATTCAAGG-ATGTTTTGACCAAAAACG
* ** ** * * * **
7236266 CCTTAAATAATCCCCTCTCAATTATTTTATGGATTATTTGAGACGTTTTTTGCCAGAAAATGTCT
1 CCTTCAATAATCCATTC-CAATT-TTTTATGGATTATTCAAGGC-ATTTTTACCAGAAAATACCT
* *
7236331 TGAATATTTCTTTACAAAAAATTGAATTAGGTTATTTAAGGCATTTCTAGCCAAAAATATCTTTA
63 TGAATATTTCTTTACAAAAAATTGAATTAGGTTATTCAAGGCATTTCTAGCCAAAAACA-CTTTA
* * *
7236396 ATAATCCCTTCAATTTTTAACTAGGGGATTTTTCAAGGCATGTTTTGACAAAAAATG
127 ATAATCCCTTCAATTTTTAACTA-GGGATTATTCAAGG-ATGTTTTGACCAAAAACG
* *
7236453 CCTTCAATAATCCATTCCAATTTTTT-TGGGCATTATTCAAGGCATTGTTACCTAGAAAATGCCT
1 CCTTCAATAATCCATTCCAATTTTTTAT-GG-ATTATTCAAGGCATTTTTACC-AGAAAATACCT
7236517 TGAATA
63 TGAATA
7236523 ATCCTCCCCA
Statistics
Matches: 342, Mismatches: 73, Indels: 57
0.72 0.15 0.12
Matches are distributed among these distances:
183 6 0.02
184 3 0.01
185 34 0.10
186 122 0.36
187 67 0.20
188 17 0.05
189 83 0.24
190 8 0.02
191 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (181 bp):
CCTTCAATAATCCATTCCAATTTTTTATGGATTATTCAAGGCATTTTTACCAGAAAATACCTTGA
ATATTTCTTTACAAAAAATTGAATTAGGTTATTCAAGGCATTTCTAGCCAAAAACACTTTAATAA
TCCCTTCAATTTTTAACTAGGGATTATTCAAGGATGTTTTGACCAAAAACG
Found at i:7236580 original size:59 final size:62
Alignment explanation
Indices: 7236447--7236614 Score: 154
Period size: 61 Copynumber: 2.8 Consensus size: 62
7236437 GTTTTGACAA
* * * *
7236447 AAAATGCCTTCAATAA-TCCATTCC-AA-TTTTTTTGGGCATTATTCAAGGCATTGTTACCTAG
1 AAAATGCCTTGAATAATTCC-CTCCAAATTTTTTTTAGG-ATTATTCAAAGCATTGTTACCTAG
** * *
7236508 AAAATGCCTTGAATAA-T-CCTCCCCATTTTTTTTAGGATTATTCAAAGCGTAT-TTAGCTA-
1 AAAATGCCTTGAATAATTCCCTCCAAATTTTTTTTAGGATTATTCAAAGCAT-TGTTACCTAG
*
7236567 AAAATG-CTATGAATAATTCCCTTCAAATTTTTTTATAGGATTATTCAA
1 AAAATGCCT-TGAATAATTCCCTCCAAATTTTTTT-TAGGATTATTCAA
7236615 GATATTTTTA
Statistics
Matches: 90, Mismatches: 10, Indels: 13
0.80 0.09 0.12
Matches are distributed among these distances:
58 2 0.02
59 16 0.18
60 21 0.23
61 38 0.42
62 13 0.14
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.39
Consensus pattern (62 bp):
AAAATGCCTTGAATAATTCCCTCCAAATTTTTTTTAGGATTATTCAAAGCATTGTTACCTAG
Found at i:7243314 original size:36 final size:36
Alignment explanation
Indices: 7243234--7243316 Score: 130
Period size: 36 Copynumber: 2.3 Consensus size: 36
7243224 CAAAACATAT
*
7243234 TGGCCAAAAATTTGAGGGGATTATTCAAGGCATTTT
1 TGGCCAAAAATTTGAGGGGATTATTCAAGGCATTTC
**
7243270 TGGCCAAAAATTTGAGGGGATTATTCAAGGTGTTTC
1 TGGCCAAAAATTTGAGGGGATTATTCAAGGCATTTC
*
7243306 TGGGCAAAAAT
1 TGGCCAAAAAT
7243317 ACCTCGAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.31
Consensus pattern (36 bp):
TGGCCAAAAATTTGAGGGGATTATTCAAGGCATTTC
Found at i:7243439 original size:64 final size:62
Alignment explanation
Indices: 7243311--7243465 Score: 172
Period size: 64 Copynumber: 2.5 Consensus size: 62
7243301 GTTTCTGGGC
* * *
7243311 AAAAATACCTCGAATAATCTCCAAAAAAAAATGGCAATGGATTATTGAAGGCATTTTTGGCA
1 AAAAATACCTTGAATAATCTCCAAAAAAAAATGGCAATGGATTATTCAAGGCATTTTTGACA
* ** *
7243373 AAAAATACCTTGAATAATC-CCTTACAAAAAAAT-TTAATGGAGCTTATTCAATGCATTTTTGAC
1 AAAAATACCTTGAATAATCTCC--AAAAAAAAATGGCAATGGA--TTATTCAAGGCATTTTTGAC
7243436 A
62 A
* *
7243437 AAAAATACCTTCAATAATCT-CATAAAAAA
1 AAAAATACCTTGAATAATCTCCAAAAAAAA
7243466 TTTTTGGTGA
Statistics
Matches: 79, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
61 2 0.03
62 31 0.39
63 9 0.11
64 37 0.47
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.28
Consensus pattern (62 bp):
AAAAATACCTTGAATAATCTCCAAAAAAAAATGGCAATGGATTATTCAAGGCATTTTTGACA
Found at i:7244463 original size:33 final size:33
Alignment explanation
Indices: 7244383--7244449 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
7244373 ATCTTTTAGT
7244383 ATAAAAACATTTCATAAGTTAATTTTTATTTTC
1 ATAAAAACATTTCATAAGTTAATTTTTATTTTC
7244416 ATAAAAACATTTCATAAGTTAATTTTTATTTTC
1 ATAAAAACATTTCATAAGTTAATTTTTATTTTC
7244449 A
1 A
7244450 ACTGATTCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.48
Consensus pattern (33 bp):
ATAAAAACATTTCATAAGTTAATTTTTATTTTC
Found at i:7248632 original size:24 final size:25
Alignment explanation
Indices: 7248603--7248656 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
7248593 TTATTAAATC
7248603 ATTTTTAAAAAAAAAATTC-CATAA
1 ATTTTTAAAAAAAAAATTCACATAA
** * *
7248627 ATTTTTCTAAAAAAATTTCATATAA
1 ATTTTTAAAAAAAAAATTCACATAA
7248652 ATTTT
1 ATTTT
7248657 GTCAATCCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 16 0.64
25 9 0.36
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (25 bp):
ATTTTTAAAAAAAAAATTCACATAA
Found at i:7249548 original size:2 final size:2
Alignment explanation
Indices: 7249541--7249565 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7249531 CCGTTTGCAA
7249541 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7249566 ATTTAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7250669 original size:13 final size:14
Alignment explanation
Indices: 7250646--7250683 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
7250636 ATCCTTTTCT
7250646 TTGTT-ATTATTAG
1 TTGTTAATTATTAG
7250659 -TGTTAATTATTAG
1 TTGTTAATTATTAG
7250672 TTGTTAAATTAT
1 TTGTT-AATTAT
7250684 GTTACGGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.18
13 8 0.36
14 4 0.18
15 6 0.27
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (14 bp):
TTGTTAATTATTAG
Found at i:7258144 original size:18 final size:17
Alignment explanation
Indices: 7258123--7258191 Score: 68
Period size: 18 Copynumber: 3.8 Consensus size: 17
7258113 CTAGACTCTC
7258123 TCTCTCTTCTTTCTTTAT
1 TCTCTCTT-TTTCTTTAT
*
7258141 TCTCTCTATTTTCTCTGTCT
1 TCTCTCT-TTTTCT-T-TAT
*
7258161 TCTCTCTTTTTCTTTGT
1 TCTCTCTTTTTCTTTAT
7258178 TCT-TCTTCTTTCTT
1 TCTCTCTT-TTTCTT
7258192 GCAGAAACTT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
16 4 0.09
17 11 0.24
18 13 0.29
19 8 0.18
20 9 0.20
ACGTcount: A:0.03, C:0.28, G:0.03, T:0.67
Consensus pattern (17 bp):
TCTCTCTTTTTCTTTAT
Found at i:7258163 original size:20 final size:20
Alignment explanation
Indices: 7258123--7258188 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
7258113 CTAGACTCTC
* *
7258123 TCTCTCTTCTT-TCT-TTAT
1 TCTCTCTTTTTCTCTGTTCT
7258141 TCTCTCTATTTTCTCTG-TCT
1 TCTCTCT-TTTTCTCTGTTCT
*
7258161 TCTCTCTTTTTCTTTGTTCT
1 TCTCTCTTTTTCTCTGTTCT
7258181 TCT-TCTTT
1 TCTCTCTTT
7258189 CTTGCAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 7 0.17
19 16 0.39
20 18 0.44
ACGTcount: A:0.03, C:0.27, G:0.03, T:0.67
Consensus pattern (20 bp):
TCTCTCTTTTTCTCTGTTCT
Found at i:7258337 original size:15 final size:15
Alignment explanation
Indices: 7258311--7258345 Score: 54
Period size: 14 Copynumber: 2.3 Consensus size: 15
7258301 CCATACTAGC
7258311 AAAAATGTCAAAATAA
1 AAAAATGTCAAAA-AA
7258327 AAAAATG-CAAAAAA
1 AAAAATGTCAAAAAA
7258341 AAAAA
1 AAAAA
7258346 AAAAAAAGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.37
15 5 0.26
16 7 0.37
ACGTcount: A:0.77, C:0.06, G:0.06, T:0.11
Consensus pattern (15 bp):
AAAAATGTCAAAAAA
Found at i:7258347 original size:16 final size:16
Alignment explanation
Indices: 7258311--7258346 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
7258301 CCATACTAGC
*
7258311 AAAAATGTCAAAATAA
1 AAAAATGTCAAAAAAA
7258327 AAAAATG-CAAAAAAA
1 AAAAATGTCAAAAAAA
7258342 AAAAA
1 AAAAA
7258347 AAAAAAGTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.78, C:0.06, G:0.06, T:0.11
Consensus pattern (16 bp):
AAAAATGTCAAAAAAA
Found at i:7259483 original size:14 final size:14
Alignment explanation
Indices: 7259466--7259495 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7259456 TTATATATTT
7259466 TTTATTTTTCTTTC
1 TTTATTTTTCTTTC
7259480 TTTATTTTTCTTTC
1 TTTATTTTTCTTTC
7259494 TT
1 TT
7259496 CTTCTTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTATTTTTCTTTC
Found at i:7259487 original size:20 final size:20
Alignment explanation
Indices: 7259464--7259502 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7259454 TATTATATAT
7259464 TTTTTATTT-TTCTTTCTTTA
1 TTTTTATTTCTTC-TTCTTTA
*
7259484 TTTTTCTTTCTTCTTCTTT
1 TTTTTATTTCTTCTTCTTT
7259503 CCTTATCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTATTTCTTCTTCTTTA
Found at i:7261709 original size:20 final size:18
Alignment explanation
Indices: 7261670--7261715 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
7261660 TGATTCCTTT
7261670 AAAAAAAATCAAAAATAA
1 AAAAAAAATCAAAAATAA
* *
7261688 AAAAACAAATCGAAAATGA
1 AAAAA-AAATCAAAAATAA
7261707 AAAAAAAAT
1 AAAAAAAAT
7261716 TTTCACATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.78, C:0.07, G:0.04, T:0.11
Consensus pattern (18 bp):
AAAAAAAATCAAAAATAA
Found at i:7268244 original size:26 final size:25
Alignment explanation
Indices: 7268185--7268245 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 25
7268175 TGTGTGAAAT
* *
7268185 AAAAAACACAAACAAAAATGAAAAC
1 AAAAAAAACAAACAAAAATAAAAAC
7268210 AAAATAAAACAAACAAAAATAAAAATC
1 AAAA-AAAACAAACAAAAATAAAAA-C
7268237 ACAAAAAAA
1 A-AAAAAAA
7268246 ACTTTTCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 4 0.13
26 18 0.58
27 6 0.19
28 3 0.10
ACGTcount: A:0.79, C:0.13, G:0.02, T:0.07
Consensus pattern (25 bp):
AAAAAAAACAAACAAAAATAAAAAC
Found at i:7279003 original size:47 final size:47
Alignment explanation
Indices: 7278837--7279147 Score: 284
Period size: 48 Copynumber: 6.7 Consensus size: 47
7278827 GAACATATAG
* *
7278837 ATTTTAAAGTTGTTGAGCCTCTGCTTAGAA-GAGCTTTTTTAAGATGGA
1 ATTTTAAAGTTGTTGAGCCTCTGCTTA-AAGGAGCTTTTTCAAGAT-AA
* * *
7278885 TTTTTAAAGTTGTTGAGCCTCTGCTTAAAGAAGCGTTTTCAAGATAA
1 ATTTTAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTTTTTCAAGATAA
** *
7278932 ATTTTTAAAGTCATTGAGCCTCTGTTTAAAGGAGCTTTTTCAAGATAA
1 A-TTTTAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTTTTTCAAGATAA
* * * * * *
7278980 ATTTTAAAGTTGCTAAGCCTCTGTTTAGATGAGTTTTTTCAAGATAA
1 ATTTTAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTTTTTCAAGATAA
** *
7279027 ATTTTAAAGTTGTTGAGCCTCTGCTTAGGGGAGTCTCTTT-AA-AT--
1 ATTTTAAAGTTGTTGAGCCTCTGCTTAAAGGAG-CTTTTTCAAGATAA
* * * *
7279071 -TTTAAAAAGTTGTTGAACCTCTACTTAAAGGAGTCTCTTT-AA-AT--
1 ATTT-TAAAGTTGTTGAGCCTCTGCTTAAAGGAG-CTTTTTCAAGATAA
*
7279115 -TTTTAAAAGTTGTTGAGCCTCTACTTAAAGGAG
1 ATTTT-AAAGTTGTTGAGCCTCTGCTTAAAGGAG
7279148 TCTCTTTAAA
Statistics
Matches: 226, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.01
44 65 0.29
46 2 0.01
47 72 0.32
48 84 0.37
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (47 bp):
ATTTTAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTTTTTCAAGATAA
Found at i:7279021 original size:95 final size:95
Alignment explanation
Indices: 7278837--7279054 Score: 280
Period size: 95 Copynumber: 2.3 Consensus size: 95
7278827 GAACATATAG
* * * * *
7278837 ATTTTAAAGTTGTTGAGCCTCTGCTTAGAAGAGCTTTTTTAAGATGGATTTTTAAAGTTGTTGAG
1 ATTTTAAAGTTGTTGAGCCTCTGCTTAGAAGAGCTTTTTCAAGATGAAATTTTAAAGTTGCTAAG
7278902 CCTCTGCTTAAAGAAGCGTTTTCAAGATAA
66 CCTCTGCTTAAAGAAGCGTTTTCAAGATAA
** *
7278932 ATTTTTAAAGTCATTGAGCCTCTGTTTA-AAGGAGCTTTTTCAAGAT-AAATTTTAAAGTTGCTA
1 A-TTTTAAAGTTGTTGAGCCTCTGCTTAGAA-GAGCTTTTTCAAGATGAAATTTTAAAGTTGCTA
* * **
7278995 AGCCTCTGTTTAGATG-AGTTTTTTCAAGATAA
64 AGCCTCTGCTTA-AAGAAGCGTTTTCAAGATAA
7279027 ATTTTAAAGTTGTTGAGCCTCTGCTTAG
1 ATTTTAAAGTTGTTGAGCCTCTGCTTAG
7279055 GGGAGTCTCT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
94 23 0.22
95 42 0.40
96 39 0.38
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.40
Consensus pattern (95 bp):
ATTTTAAAGTTGTTGAGCCTCTGCTTAGAAGAGCTTTTTCAAGATGAAATTTTAAAGTTGCTAAG
CCTCTGCTTAAAGAAGCGTTTTCAAGATAA
Found at i:7279086 original size:44 final size:44
Alignment explanation
Indices: 7279024--7279263 Score: 243
Period size: 44 Copynumber: 5.5 Consensus size: 44
7279014 TTTTTCAAGA
*
7279024 TAAATTTT--AAAGTTGTTGAGCCTCTGCTTAGGGGAGTCTCTT
1 TAAATTTTAAAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTCTT
* * *
7279066 TAAATTTTAAAAAGTTGTTGAACCTCTACTTAAAGGAGTCTCTT
1 TAAATTTTAAAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTCTT
* * *
7279110 TAAATTTTTAAAAGTTGTTGAGCCTCTACTTAAAGGAGTCTCTT
1 TAAATTTTAAAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTCTT
* * * ** * *
7279154 TAAATTTTCAGAAGTCGTTGAATCTTTGCTTAGAGGAGCCTCTT
1 TAAATTTTAAAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTCTT
* * * * * * *
7279198 TAAATTTTTAAAAGTTATTAAGCTTTTGCTTAGAGGA-ACTTTT
1 TAAATTTTAAAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTCTT
*
7279241 TAAATTTTCAAAAATGTTATTGA
1 TAAATTTT-AAAAA-GTTGTTGA
7279264 ATCTCTATTT
Statistics
Matches: 167, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
42 8 0.05
43 12 0.07
44 140 0.84
45 7 0.04
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (44 bp):
TAAATTTTAAAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTCTT
Found at i:7279131 original size:88 final size:88
Alignment explanation
Indices: 7279024--7279294 Score: 307
Period size: 88 Copynumber: 3.1 Consensus size: 88
7279014 TTTTTCAAGA
*
7279024 TAAA-TTTT-AAAGTTGTTGAGCCTCTGCTTAGGGGAGTCTCTTTAAATTTTAAAAAGTTGTTGA
1 TAAATTTTTAAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTCTTTAAATTTTAAAAAGTTGTTGA
* *
7279087 ACCTCTACTTAAAGGAGTCTCTT
66 ATCTCTACTTAAAGGAGCCTCTT
* * * * *
7279110 TAAATTTTTAAAAGTTGTTGAGCCTCTACTTAAAGGAGTCTCTTTAAATTTTCAGAAGTCGTTGA
1 TAAATTTTTAAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTCTTTAAATTTTAAAAAGTTGTTGA
* * *
7279175 ATCTTTGCTTAGAGGAGCCTCTT
66 ATCTCTACTTAAAGGAGCCTCTT
* * * * * * *
7279198 TAAATTTTTAAAAGTTATTAAGCTTTTGCTTAGAGGA-ACTTTTTAAATTTTCAAAAATGTTATT
1 TAAATTTTTAAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTCTTTAAATTTT-AAAAA-GTTGTT
* **
7279262 GAATCTCTATTTAAAATAGCCT-TT
64 GAATCTCTACTTAAAGGAGCCTCTT
7279286 TAAATTTTT
1 TAAATTTTT
7279295 TTTAAAAAAA
Statistics
Matches: 152, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
86 4 0.03
87 16 0.11
88 112 0.74
89 20 0.13
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (88 bp):
TAAATTTTTAAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTCTTTAAATTTTAAAAAGTTGTTGA
ATCTCTACTTAAAGGAGCCTCTT
Found at i:7279486 original size:10 final size:10
Alignment explanation
Indices: 7279455--7279498 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
7279445 ATTTTTTATT
7279455 TTTTTCTTTC
1 TTTTTCTTTC
*
7279465 TTTTTTCCTTC
1 -TTTTTCTTTC
*
7279476 TTCTTCTTTC
1 TTTTTCTTTC
7279486 TTTTTCTTT-
1 TTTTTCTTTC
7279495 TTTT
1 TTTT
7279499 ATCAGGTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 4 0.14
10 16 0.55
11 9 0.31
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:7280390 original size:9 final size:9
Alignment explanation
Indices: 7280375--7280404 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7280365 AGGTAAAAAA
7280375 AAATTTTTT
1 AAATTTTTT
*
7280384 GAATTTTTT
1 AAATTTTTT
7280393 AAATTTTTT
1 AAATTTTTT
7280402 AAA
1 AAA
7280405 ATATTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (9 bp):
AAATTTTTT
Found at i:7281868 original size:18 final size:18
Alignment explanation
Indices: 7281850--7281884 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7281840 ACATATTTAT
7281850 TTAT-TAATATATTAATA
1 TTATGTAATATATTAATA
*
7281867 TTATGTAATTTATTAATA
1 TTATGTAATATATTAATA
7281885 ATATATAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TTATGTAATATATTAATA
Found at i:7282388 original size:11 final size:11
Alignment explanation
Indices: 7282374--7282413 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
7282364 TTTTCTATTA
7282374 TTTTTCTTCTT
1 TTTTTCTTCTT
*
7282385 TTTTTCTTTTT
1 TTTTTCTTCTT
7282396 TTTTTCCTTCTT
1 TTTTT-CTTCTT
7282408 CTTTTT
1 -TTTTT
7282414 TCCTTATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 15 0.60
12 5 0.20
13 5 0.20
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTCTTCTT
Found at i:7283329 original size:24 final size:24
Alignment explanation
Indices: 7283292--7283338 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7283282 CTGGTTCAGG
*
7283292 TAAAAAATT-TTTTTTTGAATTTTT
1 TAAAAAATTATTTTTGTG-ATTTTT
*
7283316 TAAAATATTATTTTTGTGATTTT
1 TAAAAAATTATTTTTGTGATTTT
7283339 AGATTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (24 bp):
TAAAAAATTATTTTTGTGATTTTT
Found at i:7285913 original size:19 final size:19
Alignment explanation
Indices: 7285885--7285921 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7285875 GAGAGATCCG
* *
7285885 GAGTGTAGTGTTTTGTTTT
1 GAGTGGAGTGGTTTGTTTT
7285904 GAGTGGAGTGGTTTGTTT
1 GAGTGGAGTGGTTTGTTT
7285922 GGTGGGTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.00, G:0.38, T:0.51
Consensus pattern (19 bp):
GAGTGGAGTGGTTTGTTTT
Found at i:7286672 original size:20 final size:20
Alignment explanation
Indices: 7286649--7286690 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
7286639 CTAAGGTTGA
7286649 TTGTAGACACCTAAGTTTTC
1 TTGTAGACACCTAAGTTTTC
7286669 TTGTAGACACCTAAGTTTTC
1 TTGTAGACACCTAAGTTTTC
7286689 TT
1 TT
7286691 AAGCAGGTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (20 bp):
TTGTAGACACCTAAGTTTTC
Found at i:7288695 original size:43 final size:43
Alignment explanation
Indices: 7288588--7288709 Score: 120
Period size: 43 Copynumber: 2.7 Consensus size: 43
7288578 CTTAAACTTT
* * *
7288588 AAACCCTAAACTCCAAAACTTAAAACCCTAAAACCTAAACCAAAAAC
1 AAACCCTAAACTCTAAATC-T--AACCCT-AAACCCAAACCAAAAAC
* * *
7288635 AAACCCTAAACTTTAAATCTAACCCTAAACCCAAACCTTAAACC
1 AAACCCTAAACTCTAAATCTAACCCTAAACCCAAACC-AAAAAC
* *
7288679 AAA-CCTATACTCTAAATCTAATCCTAAACCC
1 AAACCCTAAACTCTAAATCTAACCCTAAACCC
7288710 TAAATTGTAA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
43 35 0.54
44 13 0.20
46 1 0.02
47 16 0.25
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (43 bp):
AAACCCTAAACTCTAAATCTAACCCTAAACCCAAACCAAAAAC
Found at i:7288971 original size:23 final size:21
Alignment explanation
Indices: 7288928--7288971 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7288918 TCATAGTTTA
*
7288928 AAAAATGAAAAAAAATGTTTC
1 AAAAATGAAAAAAAATATTTC
*
7288949 AAAAATGAATAAGATAATATTTC
1 AAAAATGAA-AA-AAAATATTTC
7288972 TAATAAAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 9 0.47
22 2 0.11
23 8 0.42
ACGTcount: A:0.59, C:0.05, G:0.09, T:0.27
Consensus pattern (21 bp):
AAAAATGAAAAAAAATATTTC
Found at i:7289117 original size:12 final size:13
Alignment explanation
Indices: 7289100--7289191 Score: 54
Period size: 12 Copynumber: 7.3 Consensus size: 13
7289090 TAGTTTAGAT
7289100 TTTAAGGTTT-GG
1 TTTAAGGTTTGGG
7289112 TTTAAGGTTTGGG
1 TTTAAGGTTTGGG
** *
7289125 TTT-AGAATTAGG
1 TTTAAGGTTTGGG
*
7289137 TTT-AGAGTTCAGGG
1 TTTAAG-GTT-TGGG
7289151 TTT--GGTTTAGGG
1 TTTAAGGTTT-GGG
*
7289163 TTTAGGGTTT-GG
1 TTTAAGGTTTGGG
7289175 TTT-AGAGTTTGGG
1 TTTAAG-GTTTGGG
7289188 TTTA
1 TTTA
7289192 GGATTCCTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 16
0.71 0.10 0.18
Matches are distributed among these distances:
11 1 0.02
12 39 0.63
13 12 0.19
14 10 0.16
ACGTcount: A:0.17, C:0.01, G:0.35, T:0.47
Consensus pattern (13 bp):
TTTAAGGTTTGGG
Found at i:7289154 original size:44 final size:44
Alignment explanation
Indices: 7289075--7289172 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 44
7289065 AGGATTATGA
* * *
7289075 TTTAGGGTTTAGGATTAGTTTAGATTTTAAGGTTTGGTTTAAGG
1 TTTAGGGTTTAGAATTAGTTTAGAGTTCAAGGTTTGGTTTAAGG
* *
7289119 TTT-GGGTTTAGAATTAGGTTTAGAGTTCAGGGTTTGGTTTAGGG
1 TTTAGGGTTTAGAATTA-GTTTAGAGTTCAAGGTTTGGTTTAAGG
7289163 TTTAGGGTTT
1 TTTAGGGTTT
7289173 GGTTTAGAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
43 12 0.26
44 29 0.62
45 6 0.13
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (44 bp):
TTTAGGGTTTAGAATTAGTTTAGAGTTCAAGGTTTGGTTTAAGG
Found at i:7289184 original size:19 final size:19
Alignment explanation
Indices: 7289135--7289190 Score: 87
Period size: 19 Copynumber: 3.0 Consensus size: 19
7289125 TTTAGAATTA
*
7289135 GGTTTAGAGTTCAGGGTTT
1 GGTTTAGAGTTTAGGGTTT
*
7289154 GGTTTAGGGTTTAGGGTTT
1 GGTTTAGAGTTTAGGGTTT
7289173 GGTTTAGAGTTT-GGGTTT
1 GGTTTAGAGTTTAGGGTTT
7289191 AGGATTCCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
18 6 0.18
19 28 0.82
ACGTcount: A:0.12, C:0.02, G:0.39, T:0.46
Consensus pattern (19 bp):
GGTTTAGAGTTTAGGGTTT
Found at i:7289413 original size:12 final size:12
Alignment explanation
Indices: 7289396--7289468 Score: 69
Period size: 12 Copynumber: 5.9 Consensus size: 12
7289386 GATTTTCTAG
* *
7289396 GGTTTAGGGTTT
1 GGTTTAGAGTTA
*
7289408 GGTTTAGAGTTTG
1 GGTTTAGAG-TTA
7289421 GGTTTAG-GATTA
1 GGTTTAGAG-TTA
7289433 GGTTTAGAGTTCA
1 GGTTTAGAGTT-A
7289446 GGTTTAG-GATTA
1 GGTTTAGAG-TTA
7289458 GGTTTAGAGTT
1 GGTTTAGAGTT
7289469 TAGGGCTTCG
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
12 31 0.60
13 21 0.40
ACGTcount: A:0.19, C:0.01, G:0.36, T:0.44
Consensus pattern (12 bp):
GGTTTAGAGTTA
Found at i:7289423 original size:25 final size:25
Alignment explanation
Indices: 7289395--7289523 Score: 131
Period size: 25 Copynumber: 5.2 Consensus size: 25
7289385 AGATTTTCTA
* *
7289395 GGGTTTAGGGTTTGGTTTAGAGTTT
1 GGGTTTAGGATTAGGTTTAGAGTTT
*
7289420 GGGTTTAGGATTAGGTTTAGAGTTC
1 GGGTTTAGGATTAGGTTTAGAGTTT
*
7289445 AGGTTTAGGATTAGGTTTAGAGTTT
1 GGGTTTAGGATTAGGTTTAGAGTTT
* *
7289470 AGGGCTT-CG-TCTAGGGTTT-G-GTTT
1 -GGGTTTAGGAT-TA-GGTTTAGAGTTT
*
7289494 AGGGTTTAGGATTTGGTTTAGAGTTT
1 -GGGTTTAGGATTAGGTTTAGAGTTT
7289520 GGGT
1 GGGT
7289524 ACCGTTTAGA
Statistics
Matches: 86, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
24 16 0.19
25 56 0.65
26 14 0.16
ACGTcount: A:0.16, C:0.03, G:0.37, T:0.43
Consensus pattern (25 bp):
GGGTTTAGGATTAGGTTTAGAGTTT
Found at i:7289452 original size:19 final size:18
Alignment explanation
Indices: 7289396--7289519 Score: 76
Period size: 19 Copynumber: 6.6 Consensus size: 18
7289386 GATTTTCTAG
7289396 GGTTTAGGGTTT-GGTTTA
1 GGTTTA-GGTTTAGGTTTA
* *
7289414 GAGTTTGGGTTTAGGATTA
1 G-GTTTAGGTTTAGGTTTA
*
7289433 GGTTTAGAGTTCAGGTTTA
1 GGTTTAG-GTTTAGGTTTA
*
7289452 GGATTAGGTTTAGAGTTTA
1 GGTTTAGGTTTAG-GTTTA
* * *
7289471 GGGCTT-CGTCTAGGGTTT-
1 -GGTTTAGGTTTA-GGTTTA
7289489 GGTTTAGGGTTTAGGATTT-
1 GGTTTA-GGTTTAGG-TTTA
7289508 GGTTTAGAGTTT
1 GGTTTAG-GTTT
7289520 GGGTACCGTT
Statistics
Matches: 83, Mismatches: 13, Indels: 19
0.72 0.11 0.17
Matches are distributed among these distances:
17 4 0.05
18 19 0.23
19 55 0.66
20 5 0.06
ACGTcount: A:0.17, C:0.03, G:0.35, T:0.44
Consensus pattern (18 bp):
GGTTTAGGTTTAGGTTTA
Found at i:7289462 original size:50 final size:49
Alignment explanation
Indices: 7289394--7289523 Score: 149
Period size: 50 Copynumber: 2.6 Consensus size: 49
7289384 TAGATTTTCT
* *
7289394 AGGGTTTAGGGTTTGGTTTAGAGTTTGGGTTTAGGAT-TA-GGTTTAGAGTTC
1 AGGGTTTAGGATTTGGTTTAGAGTTTGGGTTT-CG-TCTAGGGTTT-G-GTTC
* * *
7289445 A-GGTTTAGGATTAGGTTTAGAGTTTAGGGCTTCGTCTAGGGTTTGGTTT
1 AGGGTTTAGGATTTGGTTTAGAGTTT-GGGTTTCGTCTAGGGTTTGGTTC
7289494 AGGGTTTAGGATTTGGTTTAGAGTTTGGGT
1 AGGGTTTAGGATTTGGTTTAGAGTTTGGGT
7289524 ACCGTTTAGA
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
49 8 0.12
50 49 0.72
51 11 0.16
ACGTcount: A:0.17, C:0.03, G:0.37, T:0.43
Consensus pattern (49 bp):
AGGGTTTAGGATTTGGTTTAGAGTTTGGGTTTCGTCTAGGGTTTGGTTC
Found at i:7289520 original size:31 final size:31
Alignment explanation
Indices: 7289458--7289521 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 31
7289448 TTTAGGATTA
* *
7289458 GGTTTAGAGTTTAGGGCTTCGTCTAGGGTTT
1 GGTTTAGAGTTTAGGACTTCGTCTAGAGTTT
* * * *
7289489 GGTTTAGGGTTTAGGATTTGGTTTAGAGTTT
1 GGTTTAGAGTTTAGGACTTCGTCTAGAGTTT
7289520 GG
1 GG
7289522 GTACCGTTTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.14, C:0.05, G:0.38, T:0.44
Consensus pattern (31 bp):
GGTTTAGAGTTTAGGACTTCGTCTAGAGTTT
Found at i:7299084 original size:37 final size:36
Alignment explanation
Indices: 7299033--7299114 Score: 121
Period size: 37 Copynumber: 2.3 Consensus size: 36
7299023 CTCTTGGGAA
* *
7299033 AAATTT-TGTATAATAATATTAAATAAACATATTTT
1 AAATTTATATATAATAATATTAAATAAAAATATTTT
7299068 AAATTTTATATATAATAATATTAAATAAAAATATTTT
1 AAA-TTTATATATAATAATATTAAATAAAAATATTTT
*
7299105 ATATTTATAT
1 AAATTTATAT
7299115 TTTATTATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
35 3 0.07
36 10 0.24
37 29 0.69
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (36 bp):
AAATTTATATATAATAATATTAAATAAAAATATTTT
Found at i:7299296 original size:21 final size:20
Alignment explanation
Indices: 7299254--7299321 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
7299244 AAATTATTTT
*
7299254 TTTTATTTTAAAAACG-T-CG
1 TTTTATTTTAAAAA-GTTATG
7299273 TTTT-TTTTCAACAAAGTTATG
1 TTTTATTTT-AA-AAAGTTATG
*
7299294 TTTTATTTTAAAAATTTATG
1 TTTTATTTTAAAAAGTTATG
7299314 TCTTTATT
1 T-TTTATT
7299322 GAATTTTGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
18 4 0.10
19 7 0.17
20 13 0.32
21 13 0.32
22 4 0.10
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.56
Consensus pattern (20 bp):
TTTTATTTTAAAAAGTTATG
Found at i:7299412 original size:24 final size:26
Alignment explanation
Indices: 7299385--7299442 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
7299375 TTAGAAAAGT
7299385 TATATTTGTTGA-A-TTTTAA-AAAAA
1 TATATTT-TTGATATTTTTAATAAAAA
*
7299409 TATATTTTTTATATTTTTAATAAAAA
1 TATATTTTTGATATTTTTAATAAAAA
7299435 -ATATTTTT
1 TATATTTTT
7299443 TTATTGTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 3 0.10
24 8 0.27
25 14 0.47
26 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (26 bp):
TATATTTTTGATATTTTTAATAAAAA
Found at i:7299426 original size:25 final size:24
Alignment explanation
Indices: 7299398--7299447 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 24
7299388 ATTTGTTGAA
7299398 TTTTAA-AAAAATATATTTTTTATAT
1 TTTTAATAAAAA-ATATTTTTT-TAT
7299423 TTTTAATAAAAAATATTTTTTTAT
1 TTTTAATAAAAAATATTTTTTTAT
7299447 T
1 T
7299448 GTAAAAACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 4 0.17
25 15 0.62
26 5 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTTAATAAAAAATATTTTTTTAT
Found at i:7302956 original size:20 final size:21
Alignment explanation
Indices: 7302920--7302970 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
7302910 ACCCGAAATT
7302920 AATA-AAATATTATTTTTTAA
1 AATATAAATATTATTTTTTAA
7302940 AATATAAATATTATTTTTT-A
1 AATATAAATATTATTTTTTAA
7302960 AATAT-AATATT
1 AATATAAATATT
7302971 TAAAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 6 0.20
20 10 0.33
21 14 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATATAAATATTATTTTTTAA
Found at i:7305075 original size:20 final size:20
Alignment explanation
Indices: 7305050--7305087 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7305040 TTTATTTTGA
7305050 GGTTTTATTTTAGGACTTAT
1 GGTTTTATTTTAGGACTTAT
*
7305070 GGTTTTATTTTGGGACTT
1 GGTTTTATTTTAGGACTT
7305088 TATTTTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.05, G:0.24, T:0.55
Consensus pattern (20 bp):
GGTTTTATTTTAGGACTTAT
Found at i:7305127 original size:12 final size:12
Alignment explanation
Indices: 7305040--7305131 Score: 57
Period size: 12 Copynumber: 7.7 Consensus size: 12
7305030 GATTAAGAGT
*
7305040 TTTATTTTGAGGT
1 TTTATTTT-AGGA
7305053 TTTATTTTAGGA
1 TTTATTTTAGGA
* *
7305065 CTTA---T-GGT
1 TTTATTTTAGGA
*
7305073 TTTATTTTGGGA
1 TTTATTTTAGGA
*
7305085 CTTTATTTTTAAGA
1 -TTTA-TTTTAGGA
* *
7305099 TTTCATTTTGGGT
1 TTT-ATTTTAGGA
7305112 TTTATTTTAGGA
1 TTTATTTTAGGA
7305124 TTTATTTT
1 TTTATTTT
7305132 TTACCTAGAA
Statistics
Matches: 60, Mismatches: 12, Indels: 15
0.69 0.14 0.17
Matches are distributed among these distances:
8 5 0.08
9 1 0.02
11 1 0.02
12 23 0.38
13 23 0.38
14 7 0.12
ACGTcount: A:0.18, C:0.03, G:0.17, T:0.61
Consensus pattern (12 bp):
TTTATTTTAGGA
Found at i:7307006 original size:12 final size:12
Alignment explanation
Indices: 7306989--7307022 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7306979 TTTAAAAAAA
*
7306989 CTTATTCTTATT
1 CTTATTATTATT
7307001 CTTATTATTATT
1 CTTATTATTATT
*
7307013 ATTATTATTA
1 CTTATTATTA
7307023 GCTTTTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (12 bp):
CTTATTATTATT
Found at i:7309250 original size:21 final size:21
Alignment explanation
Indices: 7309224--7309270 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
7309214 TGGGCCATAC
7309224 ATTTTTCTT-ATATATTTTATT
1 ATTTTTCTTAATATATTTTA-T
*
7309245 ATTTTTGTTAATATATTTTAT
1 ATTTTTCTTAATATATTTTAT
7309266 ATTTT
1 ATTTT
7309271 ATATTCGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
ATTTTTCTTAATATATTTTAT
Found at i:7309298 original size:15 final size:15
Alignment explanation
Indices: 7309278--7309312 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7309268 TTTATATTCG
7309278 ATTTATATATTTTTT
1 ATTTATATATTTTTT
*
7309293 ATTTATTTATTTTTT
1 ATTTATATATTTTTT
*
7309308 GTTTA
1 ATTTA
7309313 ATGGCCATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (15 bp):
ATTTATATATTTTTT
Found at i:7311746 original size:9 final size:9
Alignment explanation
Indices: 7311734--7311759 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7311724 TTTAATAGTA
7311734 TAAATATTT
1 TAAATATTT
7311743 TAAATATTT
1 TAAATATTT
7311752 TAAATATT
1 TAAATATT
7311760 ATTGTATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TAAATATTT
Found at i:7315325 original size:33 final size:34
Alignment explanation
Indices: 7315256--7315370 Score: 83
Period size: 33 Copynumber: 3.5 Consensus size: 34
7315246 GTTGTAGCCA
* * * *
7315256 AAAAATGAGATGACTTAGTTTTAATCAATGTTAG
1 AAAAATGAAATGACTTAGTTTTAACCAAAGTCAG
* *
7315290 AAAAA-GAAATGACTTATTTTTAGCCAAAGTCAG
1 AAAAATGAAATGACTTAGTTTTAACCAAAGTCAG
** * * ** *
7315323 -AAAATGGCACGACTTGGACTTAGCCAAAGTCA-
1 AAAAATGAAATGACTTAGTTTTAACCAAAGTCAG
*
7315355 AACAATGAAATGACTT
1 AAAAATGAAATGACTT
7315371 GGACTTAGCC
Statistics
Matches: 62, Mismatches: 17, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
32 4 0.06
33 53 0.85
34 5 0.08
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (34 bp):
AAAAATGAAATGACTTAGTTTTAACCAAAGTCAG
Found at i:7315371 original size:33 final size:33
Alignment explanation
Indices: 7315309--7315383 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
7315299 TGACTTATTT
**
7315309 TTAGCCAAAGTCAGAAAATGGCACGACTTGGAC
1 TTAGCCAAAGTCAGAAAATGAAACGACTTGGAC
*
7315342 TTAGCCAAAGTCA-AACAATGAAATGACTTGGAC
1 TTAGCCAAAGTCAGAA-AATGAAACGACTTGGAC
7315375 TTAGCCAAA
1 TTAGCCAAA
7315384 ATTGAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 2 0.05
33 36 0.95
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (33 bp):
TTAGCCAAAGTCAGAAAATGAAACGACTTGGAC
Found at i:7316667 original size:26 final size:25
Alignment explanation
Indices: 7316638--7316699 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
7316628 TTTTCTCTCA
*
7316638 TTTTTTTTGTTATTTCATTATTTCAT
1 TTTTTTTTCTTATTTCATT-TTTCAT
*
7316664 TTTTTTTATCTTTTTTCATTTTTCAT
1 TTTTTTT-TCTTATTTCATTTTTCAT
7316690 TCTTTTTTTC
1 T-TTTTTTTC
7316700 ATCTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 16 0.50
27 16 0.50
ACGTcount: A:0.11, C:0.11, G:0.02, T:0.76
Consensus pattern (25 bp):
TTTTTTTTCTTATTTCATTTTTCAT
Found at i:7316682 original size:19 final size:19
Alignment explanation
Indices: 7316658--7316710 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
7316648 TATTTCATTA
7316658 TTTCATTTTTTTTATC-TTT
1 TTTCATTTTTTTT-TCTTTT
**
7316677 TTTCATTTTTCATTCTTTT
1 TTTCATTTTTTTTTCTTTT
7316696 TTTCATCTTTTTTTT
1 TTTCAT-TTTTTTTT
7316711 ACGCTTCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 2 0.07
19 20 0.71
20 6 0.21
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTCATTTTTTTTTCTTTT
Found at i:7323929 original size:18 final size:17
Alignment explanation
Indices: 7323906--7323974 Score: 68
Period size: 18 Copynumber: 3.8 Consensus size: 17
7323896 AGACTCTCTC
7323906 TCTCTCTTCTTTCTTTAT
1 TCTCTCTT-TTTCTTTAT
*
7323924 TCTCTCTATTTTCTCTGTCT
1 TCTCTCT-TTTTCT-T-TAT
*
7323944 TCTCTCTTTTTCTTTGT
1 TCTCTCTTTTTCTTTAT
7323961 TCT-TCTTCTTTCTT
1 TCTCTCTT-TTTCTT
7323975 GCAGAAACTT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
16 4 0.09
17 11 0.24
18 13 0.29
19 8 0.18
20 9 0.20
ACGTcount: A:0.03, C:0.28, G:0.03, T:0.67
Consensus pattern (17 bp):
TCTCTCTTTTTCTTTAT
Found at i:7323946 original size:20 final size:20
Alignment explanation
Indices: 7323906--7323971 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
7323896 AGACTCTCTC
* *
7323906 TCTCTCTTCTT-TCT-TTAT
1 TCTCTCTTTTTCTCTGTTCT
7323924 TCTCTCTATTTTCTCTG-TCT
1 TCTCTCT-TTTTCTCTGTTCT
*
7323944 TCTCTCTTTTTCTTTGTTCT
1 TCTCTCTTTTTCTCTGTTCT
7323964 TCT-TCTTT
1 TCTCTCTTT
7323972 CTTGCAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 7 0.17
19 16 0.39
20 18 0.44
ACGTcount: A:0.03, C:0.27, G:0.03, T:0.67
Consensus pattern (20 bp):
TCTCTCTTTTTCTCTGTTCT
Found at i:7324120 original size:15 final size:15
Alignment explanation
Indices: 7324094--7324128 Score: 54
Period size: 14 Copynumber: 2.3 Consensus size: 15
7324084 CCATACTAGC
7324094 AAAAATGTCAAAATAA
1 AAAAATGTCAAAA-AA
7324110 AAAAATG-CAAAAAA
1 AAAAATGTCAAAAAA
7324124 AAAAA
1 AAAAA
7324129 AAATGGTCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.37
15 5 0.26
16 7 0.37
ACGTcount: A:0.77, C:0.06, G:0.06, T:0.11
Consensus pattern (15 bp):
AAAAATGTCAAAAAA
Found at i:7324130 original size:16 final size:16
Alignment explanation
Indices: 7324094--7324129 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
7324084 CCATACTAGC
*
7324094 AAAAATGTCAAAATAA
1 AAAAATGTCAAAAAAA
7324110 AAAAATG-CAAAAAAA
1 AAAAATGTCAAAAAAA
7324125 AAAAA
1 AAAAA
7324130 AATGGTCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.78, C:0.06, G:0.06, T:0.11
Consensus pattern (16 bp):
AAAAATGTCAAAAAAA
Found at i:7324657 original size:13 final size:13
Alignment explanation
Indices: 7324639--7324665 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7324629 AAATATACAC
7324639 ACTCATAAGATAT
1 ACTCATAAGATAT
7324652 ACTCATAAGATAT
1 ACTCATAAGATAT
7324665 A
1 A
7324666 AATCTCTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTCATAAGATAT
Found at i:7325232 original size:3 final size:3
Alignment explanation
Indices: 7325224--7325253 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7325214 CATCATTTTG
7325224 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7325254 ATTTTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7326222 original size:22 final size:24
Alignment explanation
Indices: 7326194--7326238 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
7326184 CTAGGTCAGA
7326194 TAAAAAA-AATTTTT-TAATTTTT
1 TAAAAAATAATTTTTGTAATTTTT
*
7326216 TAAAAAATTATTTTTGTAATTTT
1 TAAAAAATAATTTTTGTAATTTT
7326239 AAATTCTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 7 0.35
23 6 0.30
24 7 0.35
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
TAAAAAATAATTTTTGTAATTTTT
Found at i:7340720 original size:47 final size:47
Alignment explanation
Indices: 7340672--7340930 Score: 349
Period size: 47 Copynumber: 5.5 Consensus size: 47
7340662 GAACAGATGG
* * * *
7340672 ATTTTAAAGTTGTTGAGCCTTTGCTTAAAAGAGTTTTTTCAAGATGGA
1 ATTTTAAAGTTGTTGAGCCTCTGCTTAAATGAGCTTTTTCAAGAT-AA
* *
7340720 TTTTTAAAGTTGTTGAGCCTCTACTTAAATGAGCTTTTTCAAGATAA
1 ATTTTAAAGTTGTTGAGCCTCTGCTTAAATGAGCTTTTTCAAGATAA
* * * *
7340767 ATTTTAAAGTTATTAAGCCTCTACTTAAAGGAGCTTTTTCAAGATAA
1 ATTTTAAAGTTGTTGAGCCTCTGCTTAAATGAGCTTTTTCAAGATAA
*
7340814 ATTTTAAA-TTCGTTGAGCCTCTGCTTAAATGAGCTTTTTAAAGATAA
1 ATTTTAAAGTT-GTTGAGCCTCTGCTTAAATGAGCTTTTTCAAGATAA
* * * * *
7340861 ATTTTTAAGTGGTTGAGCTTTTGCTTAGATGAGCTTTTTCAAGATAA
1 ATTTTAAAGTTGTTGAGCCTCTGCTTAAATGAGCTTTTTCAAGATAA
7340908 ATTTTAAAGTTGTTGAGCCTCTG
1 ATTTTAAAGTTGTTGAGCCTCTG
7340931 TTTAGGGGAG
Statistics
Matches: 184, Mismatches: 25, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
46 2 0.01
47 141 0.77
48 41 0.22
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (47 bp):
ATTTTAAAGTTGTTGAGCCTCTGCTTAAATGAGCTTTTTCAAGATAA
Found at i:7340974 original size:44 final size:44
Alignment explanation
Indices: 7340920--7341134 Score: 234
Period size: 44 Copynumber: 4.9 Consensus size: 44
7340910 TTTAAAGTTG
* ** *
7340920 TTGAGCCTCTGTTTAGGGGAGCCTCTTTAAATTTTCAAAACTCA
1 TTGAGCCTCTGCTTAGAAGAGCCTCTTTAAATTTTCAAAAGTCA
* * * **
7340964 TTAAGCCTCTGCTTAGAGGAGCCTCTTTAAATTTTTAAAAGTTG
1 TTGAGCCTCTGCTTAGAAGAGCCTCTTTAAATTTTCAAAAGTCA
* * *
7341008 TTGAGCCTCTGCTTAGAAGAGTCTCTTTAAATTTTCAGAAGTCG
1 TTGAGCCTCTGCTTAGAAGAGCCTCTTTAAATTTTCAAAAGTCA
* * * * *
7341052 TTGAGTCTTTGCTTAGAAGAGCCTATTTAAATTTTTAAAAGTTA
1 TTGAGCCTCTGCTTAGAAGAGCCTCTTTAAATTTTCAAAAGTCA
* ** *
7341096 TTGAGCCTCTGTTTAG-AGAAACTTTTTAAATTTTCAAAA
1 TTGAGCCTCTGCTTAGAAGAGCCTCTTTAAATTTTCAAAA
7341135 ATGTTATTGA
Statistics
Matches: 143, Mismatches: 28, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
43 19 0.13
44 124 0.87
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (44 bp):
TTGAGCCTCTGCTTAGAAGAGCCTCTTTAAATTTTCAAAAGTCA
Found at i:7341012 original size:88 final size:88
Alignment explanation
Indices: 7340905--7341134 Score: 295
Period size: 88 Copynumber: 2.6 Consensus size: 88
7340895 TTTTTCAAGA
* *
7340905 TAAA-TTTT-AAAGTTGTTGAGCCTCTGTTTAGGGGAGCCTCTTTAAATTTTCAAAACTCATTAA
1 TAAATTTTTAAAAGTTGTTGAGCCTCTGTTTAGGAGAGACTCTTTAAATTTTCAAAACTCATTAA
* *
7340968 GCCTCTGCTTAGAGGAGCCTCTT
66 GCCTCTGCTTAGAAGAGCCTATT
* * * * * * *
7340991 TAAATTTTTAAAAGTTGTTGAGCCTCTGCTTAGAAGAGTCTCTTTAAATTTTCAGAAGTCGTTGA
1 TAAATTTTTAAAAGTTGTTGAGCCTCTGTTTAGGAGAGACTCTTTAAATTTTCAAAACTCATTAA
* *
7341056 GTCTTTGCTTAGAAGAGCCTATT
66 GCCTCTGCTTAGAAGAGCCTATT
* * *
7341079 TAAATTTTTAAAAGTTATTGAGCCTCTGTTTA-GAGAAACTTTTTAAATTTTCAAAA
1 TAAATTTTTAAAAGTTGTTGAGCCTCTGTTTAGGAGAGACTCTTTAAATTTTCAAAA
7341135 ATGTTATTGA
Statistics
Matches: 123, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
86 4 0.03
87 23 0.19
88 96 0.78
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (88 bp):
TAAATTTTTAAAAGTTGTTGAGCCTCTGTTTAGGAGAGACTCTTTAAATTTTCAAAACTCATTAA
GCCTCTGCTTAGAAGAGCCTATT
Found at i:7341169 original size:88 final size:88
Alignment explanation
Indices: 7340905--7341180 Score: 247
Period size: 88 Copynumber: 3.1 Consensus size: 88
7340895 TTTTTCAAGA
* * ** ** *
7340905 TAAA-TTTT-AAAGTTGTTGAGCCTCTGTTTAGGGGAGCCTCTTTAAATTTTCAAAACTCATT-A
1 TAAATTTTTAAAAGTTATTGAGCCTCTGCTTAGAAGAAACTCTTTAAATTTTCAAAAGTCATTGA
* * * * *
7340967 AGCCTCTGCTTAGAGGAGCCTCTT
66 A-TCTCTACTTAAAAGAGCCTATT
* ** * *
7340991 TAAATTTTTAAAAGTTGTTGAGCCTCTGCTTAGAAGAGTCTCTTTAAATTTTCAGAAGTCGTTGA
1 TAAATTTTTAAAAGTTATTGAGCCTCTGCTTAGAAGAAACTCTTTAAATTTTCAAAAGTCATTGA
* * * *
7341056 GTCTTTGCTTAGAAGAGCCTATT
66 ATCTCTACTTAAAAGAGCCTATT
* * *
7341079 TAAATTTTTAAAAGTTATTGAGCCTCTGTTTAG-AGAAACTTTTTAAATTTTCAAAAATGTTATT
1 TAAATTTTTAAAAGTTATTGAGCCTCTGCTTAGAAGAAACTCTTTAAATTTTC-AAAA-GTCATT
* *
7341143 GAATCTCTATTTAAAATAGCCT-TT
64 GAATCTCTACTTAAAAGAGCCTATT
7341167 TAAATTTTTCAAAA
1 TAAATTTTT-AAAA
7341181 AAAAAGGGAT
Statistics
Matches: 158, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
86 4 0.03
87 20 0.13
88 109 0.69
89 25 0.16
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (88 bp):
TAAATTTTTAAAAGTTATTGAGCCTCTGCTTAGAAGAAACTCTTTAAATTTTCAAAAGTCATTGA
ATCTCTACTTAAAAGAGCCTATT
Found at i:7341353 original size:21 final size:20
Alignment explanation
Indices: 7341320--7341359 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
7341310 TAGTATTATT
7341320 ATTTTTTTATTTTTTCTTTA
1 ATTTTTTTATTTTTTCTTTA
*
7341340 ATTTTTTCTTTTTTTTCTTT
1 ATTTTTT-TATTTTTTCTTT
7341360 CCTTATCAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.82
Consensus pattern (20 bp):
ATTTTTTTATTTTTTCTTTA
Found at i:7343312 original size:12 final size:12
Alignment explanation
Indices: 7343295--7343340 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
7343285 TTGTTACGTA
7343295 AATTTTAAAATT
1 AATTTTAAAATT
** *
7343307 AATTTTTTAATA
1 AATTTTAAAATT
7343319 AATTTT--AATT
1 AATTTTAAAATT
7343329 AATTTTAAAATT
1 AATTTTAAAATT
7343341 TTATTAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 9 0.32
12 19 0.68
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
AATTTTAAAATT
Found at i:7343610 original size:14 final size:14
Alignment explanation
Indices: 7343591--7343620 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7343581 GTTTTTTGGT
7343591 TAAAAAAAAATTTA
1 TAAAAAAAAATTTA
7343605 TAAAAAAAAATTTA
1 TAAAAAAAAATTTA
7343619 TA
1 TA
7343621 CTAAACGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAAAAAAAATTTA
Found at i:7344846 original size:19 final size:19
Alignment explanation
Indices: 7344818--7344854 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7344808 GAGAGATCCG
* *
7344818 GAGTGTAGTGTTTTGTTTT
1 GAGTGGAGTGGTTTGTTTT
7344837 GAGTGGAGTGGTTTGTTT
1 GAGTGGAGTGGTTTGTTT
7344855 GGTGGGTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.00, G:0.38, T:0.51
Consensus pattern (19 bp):
GAGTGGAGTGGTTTGTTTT
Found at i:7348062 original size:18 final size:18
Alignment explanation
Indices: 7348028--7348078 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
7348018 TTAGAATAGA
7348028 TTAGAGTTCAGGG-TTGGG
1 TTAGAGTT-AGGGTTTGGG
* *
7348046 TTAGGGTTAGGGTTTGGT
1 TTAGAGTTAGGGTTTGGG
*
7348064 TTAGAGTTTGGGTTT
1 TTAGAGTTAGGGTTT
7348079 AGGATTCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 4 0.14
18 24 0.86
ACGTcount: A:0.14, C:0.02, G:0.41, T:0.43
Consensus pattern (18 bp):
TTAGAGTTAGGGTTTGGG
Found at i:7348300 original size:12 final size:12
Alignment explanation
Indices: 7348283--7348326 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
7348273 GATTTTCTAG
7348283 GGTTTAGGGTTT
1 GGTTTAGGGTTT
*
7348295 GGTTTAGAGTTT
1 GGTTTAGGGTTT
* *
7348307 GGGTTTAGGATTA
1 -GGTTTAGGGTTT
7348320 GGTTTAG
1 GGTTTAG
7348327 AGTTCAAGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 18 0.67
13 9 0.33
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (12 bp):
GGTTTAGGGTTT
Found at i:7348370 original size:19 final size:19
Alignment explanation
Indices: 7348343--7348421 Score: 61
Period size: 19 Copynumber: 4.2 Consensus size: 19
7348333 AGGCTTCGTC
* *
7348343 TAGGGTTTGGTTTAGGGTT
1 TAGGATTTGGTTTAGAGTT
7348362 TAGGATTTGGTTTAGAGTT
1 TAGGATTTGGTTTAGAGTT
* *** *
7348381 T-GGGTACCGTTTAGACTT
1 TAGGATTTGGTTTAGAGTT
** *
7348399 TAGGGCTTGGTGTAGAGTT
1 TAGGATTTGGTTTAGAGTT
7348418 TAGG
1 TAGG
7348422 TAGGGTCTAA
Statistics
Matches: 46, Mismatches: 13, Indels: 2
0.75 0.21 0.03
Matches are distributed among these distances:
18 13 0.28
19 33 0.72
ACGTcount: A:0.16, C:0.05, G:0.37, T:0.42
Consensus pattern (19 bp):
TAGGATTTGGTTTAGAGTT
Found at i:7357946 original size:37 final size:36
Alignment explanation
Indices: 7357895--7357976 Score: 112
Period size: 37 Copynumber: 2.3 Consensus size: 36
7357885 CTCTTGGGAA
* * *
7357895 AAATTT-TGTATAATAATATTAAATAAACATATTTT
1 AAATTTATATATAATAATATCAAATAAAAATATTTT
7357930 AAATTTTATATATAATAATATCAAATAAAAATATTTT
1 AAA-TTTATATATAATAATATCAAATAAAAATATTTT
*
7357967 ATATTTATAT
1 AAATTTATAT
7357977 TTTATTATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
35 3 0.07
36 10 0.24
37 28 0.68
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.46
Consensus pattern (36 bp):
AAATTTATATATAATAATATCAAATAAAAATATTTT
Found at i:7358271 original size:23 final size:25
Alignment explanation
Indices: 7358245--7358300 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
7358235 TAGAAAAGTT
7358245 ATATTTGTTGA-A-TTTTAA-AAAAA
1 ATATTT-TTGATATTTTTAATAAAAA
*
7358268 ATATTTTTTATATTTTTAATAAAAA
1 ATATTTTTGATATTTTTAATAAAAA
7358293 ATATTTTT
1 ATATTTTT
7358301 TTATTGTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 3 0.10
23 7 0.24
24 6 0.21
25 13 0.45
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (25 bp):
ATATTTTTGATATTTTTAATAAAAA
Found at i:7358284 original size:24 final size:24
Alignment explanation
Indices: 7358257--7358305 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 24
7358247 ATTTGTTGAA
7358257 TTTTAA-AAAAAATATTTTTTATAT
1 TTTTAATAAAAAATATTTTTT-TAT
7358281 TTTTAATAAAAAATATTTTTTTAT
1 TTTTAATAAAAAATATTTTTTTAT
7358305 T
1 T
7358306 GTAAAAACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTTAATAAAAAATATTTTTTTAT
Found at i:7358341 original size:113 final size:112
Alignment explanation
Indices: 7358206--7358541 Score: 308
Period size: 113 Copynumber: 2.9 Consensus size: 112
7358196 TGTATTTCAT
* * * * *
7358206 ATTTTCAACAAAAATTGTATTTTTTATTTTAGAAAAGTTATATTTGTTGAATTTTAAAAAAAATA
1 ATTTTCAATAAAGATTATATTTTTTATTTTAGAAAA-TTATTTTTGTTAAATTTTAAAAAAAATA
*
7358271 TTTTTTATATTTTTAATAAAAAATATTTTTTTATTGTAAAAACATCTGC
65 TTTTTTATATTTTTAATAAAAATTATTTTTTTATT-TAAAAACATCTGC
* *
7358320 -TTTTCAATAAATG-TTATATTTTTTA-TCTATGAAATATTATTTTTGTTAAATTTTAAAAAATA
1 ATTTTCAATAAA-GATTATATTTTTTATTTTA-GAAA-ATTATTTTTGTTAAATTTTAAAAAAAA
* * * * * * * *
7358382 TATTTTTTTTATGTTTACACAAAGATTGTATTTTTATCTTAAAAA-TTTTGC
63 TATTTTTTATATTTTTA-ATAAAAATTATTTTTTTAT-TTAAAAACATCTGC
* * * **
7358433 ATTTTTAATAAAGATTATAGTTTTTATTTTA-AAGCATCGTTTTTGTTAAATTTTGAAAAATAAA
1 ATTTTCAATAAAGATTATATTTTTTATTTTAGAA-AATTATTTTTGTTAAATTTT-AAAAA-AAA
*
7358497 -ATCTTTTATATTTTTAAT-AAAATTCATGTTTTTTATTTTAAAAAC
63 TATTTTTTATATTTTTAATAAAAATT-AT-TTTTTTA-TTTAAAAAC
7358542 GTTATTTTTA
Statistics
Matches: 177, Mismatches: 30, Indels: 29
0.75 0.13 0.12
Matches are distributed among these distances:
112 8 0.05
113 89 0.50
114 73 0.41
115 7 0.04
ACGTcount: A:0.38, C:0.05, G:0.06, T:0.51
Consensus pattern (112 bp):
ATTTTCAATAAAGATTATATTTTTTATTTTAGAAAATTATTTTTGTTAAATTTTAAAAAAAATAT
TTTTTATATTTTTAATAAAAATTATTTTTTTATTTAAAAACATCTGC
Found at i:7358530 original size:114 final size:111
Alignment explanation
Indices: 7358248--7358541 Score: 262
Period size: 114 Copynumber: 2.6 Consensus size: 111
7358238 AAAAGTTATA
*
7358248 TTTGTTGAATTTTAAAAA-AAATATTTTTTATATTTTTAATAAAAAATAT-TTTTTTATTGTAAA
1 TTTGTTAAATTTTAAAAATAAA-ATTTTTTATATTTTTAAT--AAAATATGTTTTTTATT-TAAA
* * *
7358311 AACATCTGCTTTTCAATAAATGTTATATTTTTTATCTATGAAATATTATT
62 AACATCTGCTTTTCAATAAATGTTATAGTTTTTATCTATGAAACATCATT
* * * *
7358361 TTTGTTAAATTTTAAAAA-ATATATTTTTTTTATGTTTACACAAAGAT-TGTATTTTTATCTTAA
1 TTTGTTAAATTTTAAAAATA-AAATTTTTTATATTTTTA-ATAAA-ATATGT-TTTTTAT-TTAA
* * * * *
7358424 AAA-TTTTGCATTTTTAATAAA-GATTATAGTTTTTAT-T-TTAAAGCATCGTT
61 AAACATCTGC-TTTTCAATAAATG-TTATAGTTTTTATCTATGAAA-CATCATT
*
7358474 TTTGTTAAATTTTGAAAAATAAAATCTTTTATATTTTTAATAAAATTCATGTTTTTTATTTTAAA
1 TTTGTTAAATTTT-AAAAATAAAATTTTTTATATTTTTAATAAAA-T-ATGTTTTTTA-TTTAAA
7358539 AAC
62 AAC
7358542 GTTATTTTTA
Statistics
Matches: 147, Mismatches: 18, Indels: 30
0.75 0.09 0.15
Matches are distributed among these distances:
112 9 0.06
113 63 0.43
114 69 0.47
115 6 0.04
ACGTcount: A:0.37, C:0.05, G:0.06, T:0.52
Consensus pattern (111 bp):
TTTGTTAAATTTTAAAAATAAAATTTTTTATATTTTTAATAAAATATGTTTTTTATTTAAAAACA
TCTGCTTTTCAATAAATGTTATAGTTTTTATCTATGAAACATCATT
Found at i:7361194 original size:2 final size:2
Alignment explanation
Indices: 7361187--7361213 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7361177 ATATAGAATT
7361187 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7361214 GTATGGACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7361888 original size:20 final size:21
Alignment explanation
Indices: 7361852--7361903 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
7361842 CCCGAAATTA
7361852 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTA-TTTTTAAAAT
*
7361874 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTAAAAT
7361895 AT-AAATATT
1 ATAAAATATT
7361904 TAAAAATATC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 7 0.24
21 11 0.38
22 11 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAAAATATTATTTTTAAAAT
Found at i:7361894 original size:21 final size:22
Alignment explanation
Indices: 7361852--7361903 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
7361842 CCCGAAATTA
7361852 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTTAAAAT
7361874 ATAAAATATTATTTTTT-AAAT
1 ATAAAATATTATTTTTTAAAAT
7361895 AT-AAATATT
1 ATAAAATATT
7361904 TAAAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 7 0.23
21 6 0.20
22 17 0.57
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAAAATATTATTTTTTAAAAT
Found at i:7361911 original size:30 final size:30
Alignment explanation
Indices: 7361876--7361943 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
7361866 TTTAAAATAT
* * *
7361876 AAAATATTATTTTTTAAATATAAATATTTA
1 AAAATATTATTATATAAATATAAATAATTA
* *
7361906 AAAATATCATTATATAAATATATATAATTA
1 AAAATATTATTATATAAATATAAATAATTA
7361936 AAAA-ATTA
1 AAAATATTA
7361944 AAAAATTAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 3 0.09
30 29 0.91
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (30 bp):
AAAATATTATTATATAAATATAAATAATTA
Found at i:7364016 original size:20 final size:20
Alignment explanation
Indices: 7363991--7364028 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7363981 TTTATTTTGA
7363991 GGTTTTATTTTAGGACTTAT
1 GGTTTTATTTTAGGACTTAT
*
7364011 GGTTTTATTTTGGGACTT
1 GGTTTTATTTTAGGACTT
7364029 TATTTTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.05, G:0.24, T:0.55
Consensus pattern (20 bp):
GGTTTTATTTTAGGACTTAT
Found at i:7364068 original size:12 final size:12
Alignment explanation
Indices: 7363981--7364072 Score: 57
Period size: 12 Copynumber: 7.7 Consensus size: 12
7363971 GATTAAGAGT
*
7363981 TTTATTTTGAGGT
1 TTTATTTT-AGGA
7363994 TTTATTTTAGGA
1 TTTATTTTAGGA
* *
7364006 CTTA---T-GGT
1 TTTATTTTAGGA
*
7364014 TTTATTTTGGGA
1 TTTATTTTAGGA
*
7364026 CTTTATTTTTAAGA
1 -TTTA-TTTTAGGA
* *
7364040 TTTCATTTTGGGT
1 TTT-ATTTTAGGA
7364053 TTTATTTTAGGA
1 TTTATTTTAGGA
7364065 TTTATTTT
1 TTTATTTT
7364073 TTACCTAGAA
Statistics
Matches: 60, Mismatches: 12, Indels: 15
0.69 0.14 0.17
Matches are distributed among these distances:
8 5 0.08
9 1 0.02
11 1 0.02
12 23 0.38
13 23 0.38
14 7 0.12
ACGTcount: A:0.18, C:0.03, G:0.17, T:0.61
Consensus pattern (12 bp):
TTTATTTTAGGA
Found at i:7364450 original size:3 final size:3
Alignment explanation
Indices: 7364442--7364480 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
7364432 AAATTTTTGA
7364442 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7364481 TAATAATTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7366276 original size:15 final size:15
Alignment explanation
Indices: 7366256--7366287 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7366246 AACATATGGG
*
7366256 AAAAAAAAAACACAA
1 AAAAAAAAAAAACAA
7366271 AAAAAAAAAAAACAA
1 AAAAAAAAAAAACAA
7366286 AA
1 AA
7366288 CTTGCAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAACAA
Found at i:7368213 original size:23 final size:21
Alignment explanation
Indices: 7368164--7368252 Score: 62
Period size: 21 Copynumber: 4.3 Consensus size: 21
7368154 TGGGCCATAC
7368164 ATTTTTCTTATATTATTTTATT
1 ATTTTTCTTATATTATTTTA-T
*
7368186 ATTTTGT-TAATATATATTTTAT
1 ATTTT-TCTTATAT-TATTTTAT
* *
7368208 ATTTTT-ATATATCGATTTTAT
1 ATTTTTCTTATAT-TATTTTAT
*
7368229 ATTATT-TTAT-TTA-TTTAT
1 ATTTTTCTTATATTATTTTAT
*
7368247 TTTTTT
1 ATTTTT
7368253 TGTTTAATGG
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
18 9 0.16
19 1 0.02
20 1 0.02
21 20 0.36
22 16 0.29
23 8 0.15
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
ATTTTTCTTATATTATTTTAT
Found at i:7385824 original size:33 final size:31
Alignment explanation
Indices: 7385787--7385879 Score: 98
Period size: 33 Copynumber: 2.9 Consensus size: 31
7385777 ATTTTAAGTC
7385787 TTCATTTTTTCTTTTTTTTTTCTTTTTCGTTAT
1 TTCATTTTTTCTTTTTTTTTTCTTTTTC-TT-T
* *
7385820 TTCATTATTTCATTTTTTTTATCTTTTATCTTT
1 TTCATTTTTTC-TTTTTTTTTTCTTTT-TCTTT
* *
7385853 TATC-TTTTTTCATTTTTTATTCTTTTT
1 T-TCATTTTTTCTTTTTTTTTTCTTTTT
7385880 TTTCATCTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
31 1 0.02
32 12 0.24
33 18 0.35
34 18 0.35
35 2 0.04
ACGTcount: A:0.11, C:0.12, G:0.01, T:0.76
Consensus pattern (31 bp):
TTCATTTTTTCTTTTTTTTTTCTTTTTCTTT
Found at i:7385852 original size:41 final size:39
Alignment explanation
Indices: 7385787--7385881 Score: 102
Period size: 41 Copynumber: 2.3 Consensus size: 39
7385777 ATTTTAAGTC
* *
7385787 TTCATTTTTTCTTTTTTTTTTCTTTT-TCGTTATTTCATTAT
1 TTCATTTTTT-TTTCTTTTATCTTTTATC-TTATTTCATT-T
*
7385828 TTCATTTTTTTTATCTTTTATCTTTTATCTTTTTTCATTT
1 TTCATTTTTTTT-TCTTTTATCTTTTATCTTATTTCATTT
*
7385868 TTTATTCTTTTTTT
1 TTCATT-TTTTTTT
7385882 TCATCTTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
40 9 0.19
41 36 0.77
42 2 0.04
ACGTcount: A:0.11, C:0.12, G:0.01, T:0.77
Consensus pattern (39 bp):
TTCATTTTTTTTTCTTTTATCTTTTATCTTATTTCATTT
Found at i:7385892 original size:14 final size:13
Alignment explanation
Indices: 7385832--7385898 Score: 62
Period size: 14 Copynumber: 4.8 Consensus size: 13
7385822 CATTATTTCA
7385832 TTTTTTTTATCTT
1 TTTTTTTTATCTT
*
7385845 TTATCTTTTATCTT
1 TT-TTTTTTATCTT
* *
7385859 TTTTCATTTTTTATT
1 TTTT--TTTTATCTT
7385874 CTTTTTTTTCATCTT
1 -TTTTTTTT-ATCTT
7385889 TTTTTTTTAT
1 TTTTTTTTAT
7385899 GCTCCATTCA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
13 5 0.12
14 24 0.56
15 10 0.23
16 4 0.09
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTTTATCTT
Found at i:7388464 original size:46 final size:46
Alignment explanation
Indices: 7388384--7388479 Score: 131
Period size: 46 Copynumber: 2.1 Consensus size: 46
7388374 ATGGTCTTGA
*
7388384 GGCTGGCATTCTCTTCCCCAACTTTCCCCATGTTCAACTTATTTGG
1 GGCTAGCATTCTCTTCCCCAACTTTCCCCATGTTCAACTTATTTGG
* * * *
7388430 GGCTAGCATTCTCTTCCCTAACGTTT-CTCGTGTTCAACTTGTTTGG
1 GGCTAGCATTCTCTTCCCCAAC-TTTCCCCATGTTCAACTTATTTGG
7388476 GGCT
1 GGCT
7388480 TCAAGATTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
46 41 0.93
47 3 0.07
ACGTcount: A:0.14, C:0.29, G:0.19, T:0.39
Consensus pattern (46 bp):
GGCTAGCATTCTCTTCCCCAACTTTCCCCATGTTCAACTTATTTGG
Found at i:7390065 original size:4 final size:4
Alignment explanation
Indices: 7390019--7390053 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
7390009 AACCTTATTT
7390019 AATA AATA AATA AATA AA-A TAATA AATA AATA AAT
1 AATA AATA AATA AATA AATA -AATA AATA AATA AAT
7390054 TTTAATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 1 0.03
4 27 0.93
5 1 0.03
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:7403845 original size:17 final size:19
Alignment explanation
Indices: 7403807--7403848 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
7403797 TTATATCTTT
*
7403807 TATTTATATATAAATATAA
1 TATTTTTATATAAATATAA
7403826 TATTTTTAT-TAAAT-TAA
1 TATTTTTATATAAATATAA
7403843 TATTTT
1 TATTTT
7403849 AAATTAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.41
18 5 0.23
19 8 0.36
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTTTTATATAAATATAA
Found at i:7403852 original size:13 final size:13
Alignment explanation
Indices: 7403834--7403875 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7403824 AATATTTTTA
7403834 TTAAATTAATATT
1 TTAAATTAATATT
* *
7403847 TTAAATTAAAATA
1 TTAAATTAATATT
7403860 TTAAA-TAATAATT
1 TTAAATTAAT-ATT
7403873 TTA
1 TTA
7403876 TTAATATATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 3 0.12
13 21 0.88
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTAAATTAATATT
Found at i:7403854 original size:18 final size:18
Alignment explanation
Indices: 7403817--7403856 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7403807 TATTTATATA
*
7403817 TAAATATAATATTTTTAT
1 TAAATATAATATTTTAAT
7403835 TAAAT-TAATATTTTAAAT
1 TAAATATAATATTTT-AAT
7403853 TAAA
1 TAAA
7403857 ATATTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAAATATAATATTTTAAT
Found at i:7403917 original size:16 final size:16
Alignment explanation
Indices: 7403887--7403919 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7403877 TAATATATAA
7403887 AAATATAAAATTAAAT
1 AAATATAAAATTAAAT
7403903 AAATAATAAAA-TAAAT
1 AAAT-ATAAAATTAAAT
7403919 A
1 A
7403920 TTTATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAATATAAAATTAAAT
Done.