Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 58 of 93
Found at i:7407332 original size:21 final size:21
Alignment explanation
Indices: 7407306--7407348 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7407296 AATAATAATG
7407306 ACAATAAAATTAGCTACTATA
1 ACAATAAAATTAGCTACTATA
* *
7407327 ACAATAAAATTAGTTATTATA
1 ACAATAAAATTAGCTACTATA
7407348 A
1 A
7407349 TAATGATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.53, C:0.09, G:0.05, T:0.33
Consensus pattern (21 bp):
ACAATAAAATTAGCTACTATA
Found at i:7410120 original size:19 final size:20
Alignment explanation
Indices: 7410096--7410167 Score: 105
Period size: 19 Copynumber: 3.6 Consensus size: 20
7410086 CAATTTAAAA
7410096 TTAATA-AAATATTAATTTT
1 TTAATATAAATATTAATTTT
7410115 TTAATATAAATATT-A-TTT
1 TTAATATAAATATTAATTTT
7410133 TTAATATAAAATATTAATTTT
1 TTAATAT-AAATATTAATTTT
7410154 TTAAATATAAATAT
1 TT-AATATAAATAT
7410168 AAAATTAAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.21
19 14 0.29
20 8 0.17
21 11 0.23
22 5 0.10
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTAATATAAATATTAATTTT
Found at i:7410173 original size:22 final size:23
Alignment explanation
Indices: 7410117--7410174 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 23
7410107 TTAATTTTTT
*
7410117 AATATAAATATTATTTTTAATATA
1 AATATAAA-ATTATTTTAAATATA
*
7410141 AA-ATATTAATT-TTTTAAATATA
1 AATATA-AAATTATTTTAAATATA
7410163 AATATAAAATTA
1 AATATAAAATTA
7410175 AATAAATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
22 16 0.57
23 9 0.32
24 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
AATATAAAATTATTTTAAATATA
Found at i:7410181 original size:16 final size:16
Alignment explanation
Indices: 7410160--7410222 Score: 56
Period size: 16 Copynumber: 3.6 Consensus size: 16
7410150 TTTTTTAAAT
7410160 ATAAATATAAAATTAA
1 ATAAATATAAAATTAA
7410176 ATAAATATACAAATATATA
1 ATAAATATA-AAAT-TA-A
7410195 ACTAAATA-AATAATTAAA
1 A-TAAATATAA-AATT-AA
7410213 ATAATATATA
1 ATAA-ATATA
7410223 TCGGGTTGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
16 9 0.23
17 7 0.18
18 9 0.23
19 8 0.21
20 6 0.15
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAATATAAAATTAA
Found at i:7410200 original size:24 final size:22
Alignment explanation
Indices: 7410155--7410206 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 22
7410145 ATTAATTTTT
*
7410155 TAAATATAAATATAAAATTAAA
1 TAAATATAAATATAAAACTAAA
*
7410177 TAAATATACAAATATATAACTAAA
1 TAAATAT--AAATATAAAACTAAA
7410201 TAAATA
1 TAAATA
7410207 ATTAAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 7 0.27
24 19 0.73
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAATATAAATATAAAACTAAA
Found at i:7410999 original size:22 final size:23
Alignment explanation
Indices: 7410967--7411010 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
7410957 ATTTAATGAG
* *
7410967 TTTAATATTTTAATATAATTTTT
1 TTTAATATTTTAAAAGAATTTTT
7410990 TTTAAT-TTTTAAAAGAATTTT
1 TTTAATATTTTAAAAGAATTTT
7411011 AAGTTTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (23 bp):
TTTAATATTTTAAAAGAATTTTT
Found at i:7414360 original size:3 final size:3
Alignment explanation
Indices: 7414354--7414489 Score: 114
Period size: 3 Copynumber: 47.7 Consensus size: 3
7414344 TTTATTGTTG
* *
7414354 TTA TTA TTA TTA TT- TTG TTA TTA TTA TTA TTA TT- TTA -GA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* * *
7414397 TATG TTA -TA TCA -TA TTA TTA TTA TTA TTA TTA TTA TTA -TA CTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7414440 -TA TTA TTTA TTA TTA TTA TTA TTA TTA TT- TCTA TT- TTA TT- TTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
7414483 TT- TTA TT
1 TTA TTA TT
7414490 TATTTCTTTT
Statistics
Matches: 111, Mismatches: 7, Indels: 30
0.75 0.05 0.20
Matches are distributed among these distances:
2 19 0.17
3 85 0.77
4 7 0.06
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7415262 original size:5 final size:5
Alignment explanation
Indices: 7415252--7415345 Score: 58
Period size: 5 Copynumber: 19.8 Consensus size: 5
7415242 AATCACAGGT
* *
7415252 TTTTA TTTTA TTTTA TTTTA -TTT- TTTGA TTTTA -TTTA TTTTA -TAT-
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
* * * * *
7415297 TTTTA GTTTA GTTTA TTTTTA ATTTC TTTAA TTTCT- TTTT- TTTTA TTTT
1 TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTT-TA TTTTA TTTTA TTTT
7415346 TTATTTGTTT
Statistics
Matches: 69, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
4 18 0.26
5 47 0.68
6 4 0.06
ACGTcount: A:0.18, C:0.02, G:0.03, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:7415288 original size:17 final size:17
Alignment explanation
Indices: 7415257--7415351 Score: 68
Period size: 17 Copynumber: 5.5 Consensus size: 17
7415247 CAGGTTTTTA
7415257 TTTTATTTTATTTTATT
1 TTTTATTTTATTTTATT
7415274 TTTTGATTTTA-TTTATT
1 TTTT-ATTTTATTTTATT
* * *
7415291 TTATATTTTTAGTTTAGT
1 TTTTA-TTTTATTTTATT
* * *
7415309 TTAT-TTTTAATTTCTT
1 TTTTATTTTATTTTATT
* *
7415325 TAATTTCTTTTTTTTTATT
1 T--TTTATTTTATTTTATT
7415344 TTTTATTT
1 TTTTATTT
7415352 GTTTATTTTC
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
16 11 0.18
17 24 0.39
18 17 0.27
19 10 0.16
ACGTcount: A:0.18, C:0.02, G:0.03, T:0.77
Consensus pattern (17 bp):
TTTTATTTTATTTTATT
Found at i:7415288 original size:22 final size:21
Alignment explanation
Indices: 7415251--7415360 Score: 98
Period size: 22 Copynumber: 4.9 Consensus size: 21
7415241 GAATCACAGG
7415251 TTTTTATTTTATTTTATTTTAT
1 TTTTTATTTTA-TTTATTTTAT
7415273 TTTTTGATTTTATTTATTTTAT
1 TTTTT-ATTTTATTTATTTTAT
*
7415295 ATTTTTAGTTTAGTTTATTTTTAAT
1 -TTTTTATTTTA-TTTA-TTTT-AT
*
7415320 TTCTTTAATTTCT-TTTTTTTTAT
1 TT-TTT-ATTT-TATTTATTTTAT
*
7415343 TTTTTA-TTTGTTTATTTT
1 TTTTTATTTTATTTATTTT
7415361 CACTGAATAT
Statistics
Matches: 75, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
19 1 0.01
20 9 0.12
21 1 0.01
22 23 0.31
23 19 0.25
24 10 0.13
25 8 0.11
26 3 0.04
27 1 0.01
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (21 bp):
TTTTTATTTTATTTATTTTAT
Found at i:7416858 original size:14 final size:13
Alignment explanation
Indices: 7416839--7416868 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
7416829 TAAATTACTA
7416839 ATAAATATATTTAT
1 ATAAATATATTT-T
7416853 ATAAATATATTTT
1 ATAAATATATTTT
7416866 ATA
1 ATA
7416869 CATTAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATAAATATATTTT
Found at i:7424013 original size:72 final size:73
Alignment explanation
Indices: 7423896--7424041 Score: 231
Period size: 72 Copynumber: 2.0 Consensus size: 73
7423886 GTGATTAATC
* * * *
7423896 TTACTTCTTGGAACTAGGTTGATTTTAAATTTAATAATTGATATATTTATATATA-TCTTTAATA
1 TTACTTCTTGAAACTAGGTTGATCTTAAATTTAATAATTCATATATTTATATATATTATTTAATA
7423960 TTTAATAT
66 TTTAATAT
*
7423968 TTACTTTTTGAAACTAGGTTGATCTTAAATTTAATAATTCATATATTTATATATATTTATTTAAT
1 TTACTTCTTGAAACTAGGTTGATCTTAAATTTAATAATTCATATATTTATATATA-TTATTTAAT
7424033 ATTTAATAT
65 ATTTAATAT
7424042 ATATAAAATA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
72 51 0.76
74 16 0.24
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (73 bp):
TTACTTCTTGAAACTAGGTTGATCTTAAATTTAATAATTCATATATTTATATATATTATTTAATA
TTTAATAT
Found at i:7426033 original size:17 final size:17
Alignment explanation
Indices: 7426011--7426049 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
7426001 TTCATCTAGA
7426011 AATTGATTTCCATTGTT
1 AATTGATTTCCATTGTT
7426028 AATTGATTTCCATTGTT
1 AATTGATTTCCATTGTT
7426045 AATTG
1 AATTG
7426050 CAGTAGGTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.26, C:0.10, G:0.13, T:0.51
Consensus pattern (17 bp):
AATTGATTTCCATTGTT
Found at i:7428776 original size:59 final size:57
Alignment explanation
Indices: 7428705--7429295 Score: 502
Period size: 59 Copynumber: 9.7 Consensus size: 57
7428695 ATTTCAAGAA
* * *
7428705 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
* * * *
7428762 AAAAAAGGTTTTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTCGAAACTAAAGTTTTCC
1 AAAAAA--TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAA-TTTT-C
* *
7428823 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
* * * *
7428880 AAAAAAAGAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTTC
1 ---AAAA-AATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAA-TTTTC
* * * * ******* *
7428943 AAAAAAAATATATGTTTGGGGAAAAGTTGAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
1 --AAAAAATAT-T-TTTGAGGAAAAGTTG-AAAGTATCAATTTTCCTTGAAA--ATAAATTTT-C
*
7429008 TTAAAGATAAATTTTCAAAGGGATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATA
1 ---AA-A-AAA---T-------ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATA
* *
7429073 AGCTTTCC
51 A-ATTTTC
*
7429081 AAAAAATATTTTTGAGGAAAAGTTGAAAGAATCAATTTTCCTTGAAAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
* *
7429138 TAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAGTTTCC
1 -AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAA-TTTTC
* *
7429197 AAAAAATATTTTTG-GGAAAAAGTTGAAAGAATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
7429254 AAAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 -AAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
7429296 TCCTGTAGAA
Statistics
Matches: 432, Mismatches: 63, Indels: 75
0.76 0.11 0.13
Matches are distributed among these distances:
57 46 0.11
58 89 0.21
59 112 0.26
60 36 0.08
61 16 0.04
62 59 0.14
63 16 0.04
64 4 0.01
65 5 0.01
66 3 0.01
67 1 0.00
68 6 0.01
69 1 0.00
70 2 0.00
71 1 0.00
73 4 0.01
74 3 0.01
75 12 0.03
76 13 0.03
77 1 0.00
78 2 0.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.35
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
Found at i:7428980 original size:20 final size:20
Alignment explanation
Indices: 7428957--7428994 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7428947 AAAATATATG
*
7428957 TTTGGGGAAAAGTTGAAAAT
1 TTTGAGGAAAAGTTGAAAAT
7428977 TTTGAGGAAAAGTTGAAA
1 TTTGAGGAAAAGTTGAAA
7428995 GTATCAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (20 bp):
TTTGAGGAAAAGTTGAAAAT
Found at i:7429227 original size:116 final size:113
Alignment explanation
Indices: 7428976--7429297 Score: 470
Period size: 116 Copynumber: 2.8 Consensus size: 113
7428966 AAGTTGAAAA
* ***
7428976 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAGATAAATTTTC-AAAGGGATTTTTGAAG
1 TTTTGAGGAAAAGTTGAAAGAATCAATTTTCCTTAAA-ATAAATTTTCAAAAAATATTTTTG-AG
*
7429040 AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCCAAAAAATAT
64 AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCCAAAAAATAT
7429090 TTTTGAGGAAAAGTTGAAAGAATCAATTTTCCTTGAAAATAAATTTTCTAAAAAATATTTTTGAG
1 TTTTGAGGAAAAGTTGAAAGAATCAATTTTCCTT-AAAATAAATTTTC-AAAAAATATTTTTGAG
7429155 AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAG-TTTCCAAAAAATAT
64 AAAAGTTGAAAGTATCAATTTTTCTTGAAAAT--AAGCTTTCCAAAAAATAT
7429206 TTTTG-GGAAAAAGTTGAAAGAATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATAAATTTTT
1 TTTTGAGG-AAAAGTTGAAAGAATCAATTTTCCTT-AAAATAAATTTTC-AAAAAAT--ATTTTT
7429270 GAGGAAAAGTTGAAAGTATCAATTTTTC
61 GA-GAAAAGTTGAAAGTATCAATTTTTC
7429298 CTGTAGAAGA
Statistics
Matches: 192, Mismatches: 7, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
114 43 0.22
115 38 0.20
116 75 0.39
117 3 0.02
118 8 0.04
119 25 0.13
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.36
Consensus pattern (113 bp):
TTTTGAGGAAAAGTTGAAAGAATCAATTTTCCTTAAAATAAATTTTCAAAAAATATTTTTGAGAA
AAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCCAAAAAATAT
Found at i:7433738 original size:27 final size:27
Alignment explanation
Indices: 7433708--7433784 Score: 65
Period size: 23 Copynumber: 3.0 Consensus size: 27
7433698 ATCAACAATG
7433708 GATGAAAAATGAGAAAAAAGAAAAAAA
1 GATGAAAAATGAGAAAAAAGAAAAAAA
* *
7433735 GATG----ATGAAAAAAAAAAAAAAAA
1 GATGAAAAATGAGAAAAAAGAAAAAAA
* *
7433758 GAAAGAAGAAATGAG-AAAATGAAAAAA
1 G-ATGAA-AAATGAGAAAAAAGAAAAAA
7433785 GGAGATTCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
23 18 0.47
24 2 0.05
27 4 0.11
28 10 0.26
29 4 0.11
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (27 bp):
GATGAAAAATGAGAAAAAAGAAAAAAA
Found at i:7433747 original size:23 final size:23
Alignment explanation
Indices: 7433716--7433759 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7433706 TGGATGAAAA
* *
7433716 ATGAGAAAAAAGAAAAAAAGATG
1 ATGAAAAAAAAAAAAAAAAGATG
7433739 ATGAAAAAAAAAAAAAAAAGA
1 ATGAAAAAAAAAAAAAAAAGA
7433760 AAGAAGAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (23 bp):
ATGAAAAAAAAAAAAAAAAGATG
Found at i:7433754 original size:20 final size:19
Alignment explanation
Indices: 7433712--7433768 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 19
7433702 ACAATGGATG
7433712 AAAAATGAGAAAAAAGAAA
1 AAAAATGAGAAAAAAGAAA
7433731 AAAAGATGATGAAAAAA-AAA
1 AAAA-ATGA-GAAAAAAGAAA
* *
7433751 AAAAA-AAGAAAGAAGAAA
1 AAAAATGAGAAAAAAGAAA
7433769 TGAGAAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 6 0.18
18 4 0.12
19 5 0.15
20 11 0.33
21 7 0.21
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (19 bp):
AAAAATGAGAAAAAAGAAA
Found at i:7435265 original size:41 final size:41
Alignment explanation
Indices: 7435216--7435560 Score: 458
Period size: 41 Copynumber: 8.1 Consensus size: 41
7435206 GATTGTCAAT
*
7435216 GAGCAATTTACTTTTCAAAGTCGTAGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
*
7435257 GAGTAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAG
* *
7435299 GAGCAATTTACTTTTTTCAAAGTCGTGGTGCCTTTGTTTAGAA
1 GAGCAATTTAC--TTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
*
7435342 GAGCAATTTACTTTTCTAAAGTCGTGGTGCTTCTGTTTAGAG
1 GAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAG
7435384 GAGCAATTTAC-TTTCTAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAG
7435425 GAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAAAGGAGCAGAG
1 GAGCAATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTT--------AGAG
*
7435475 GAGCAATTTAATTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
* * * * *
7435516 GAGCAATTTACTTTCCAAAGTCGTTGAGCTTTTGTTTAGAG
1 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
7435557 GAGC
1 GAGC
7435561 TTTGAAAAAA
Statistics
Matches: 274, Mismatches: 16, Indels: 28
0.86 0.05 0.09
Matches are distributed among these distances:
41 102 0.37
42 89 0.32
43 39 0.14
44 4 0.01
49 26 0.09
50 14 0.05
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (41 bp):
GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
Found at i:7435287 original size:42 final size:42
Alignment explanation
Indices: 7435216--7435560 Score: 455
Period size: 42 Copynumber: 8.1 Consensus size: 42
7435206 GATTGTCAAT
*
7435216 GAGCAATTTACTTTT-CAAAGTCGTAGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
*
7435257 GAGTAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
* * *
7435299 GAGCAATTTACTTTTTTCAAAGTCGTGGTGCCTTTGTTTAGAA
1 GAGCAATTTAC-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
* *
7435342 GAGCAATTTACTTTTCTAAAGTCGTGGTGCTTCTGTTTAGAG
1 GAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
*
7435384 GAGCAATTTAC-TTTCTAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
*
7435425 GAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAAAGGAGCAGAG
1 GAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTT--------AGAG
*
7435475 GAGCAATTTAATTTT-CAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
* * * *
7435516 GAGCAATTTAC-TTTCCAAAGTCGTTGAGCTTTTGTTTAGAG
1 GAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
7435557 GAGC
1 GAGC
7435561 TTTGAAAAAA
Statistics
Matches: 272, Mismatches: 20, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
40 3 0.01
41 94 0.35
42 96 0.35
43 39 0.14
49 22 0.08
50 18 0.07
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (42 bp):
GAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
Found at i:7435499 original size:49 final size:50
Alignment explanation
Indices: 7435421--7435520 Score: 175
Period size: 49 Copynumber: 2.0 Consensus size: 50
7435411 GCCTCTGTTT
*
7435421 AGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAAAGGAGC
1 AGAGGAGCAATTTACATTTTCAAAGTCGTGGTGCCTCTGTTTAAAGGAGC
*
7435471 AGAGGAGCAATTTA-ATTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 AGAGGAGCAATTTACATTTTCAAAGTCGTGGTGCCTCTGTTTAAAGGAGC
7435520 A
1 A
7435521 ATTTACTTTC
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 34 0.71
50 14 0.29
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (50 bp):
AGAGGAGCAATTTACATTTTCAAAGTCGTGGTGCCTCTGTTTAAAGGAGC
Found at i:7435609 original size:9 final size:9
Alignment explanation
Indices: 7435566--7435609 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
7435556 GGAGCTTTGA
7435566 AAAAAAAAC
1 AAAAAAAAC
7435575 AAAAAGAAAC
1 AAAAA-AAAC
7435585 -AAAAAAAC
1 AAAAAAAAC
*
7435593 AGAAAAAAC
1 AAAAAAAAC
7435602 AAAAAAAA
1 AAAAAAAA
7435610 TTACCTCTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 4 0.13
9 23 0.74
10 4 0.13
ACGTcount: A:0.86, C:0.09, G:0.05, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:7438542 original size:58 final size:58
Alignment explanation
Indices: 7438089--7438721 Score: 733
Period size: 59 Copynumber: 10.7 Consensus size: 58
7438079 TAATTTCAAG
*
7438089 AAAAAACATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTTC
1 AAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * * *
7438148 AAAAAAGGTTTTTTTGAGGAAAAATTAAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* ** **
7438207 AAAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAGCTAAAGTTTTTC
1 AAAAAAA--TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA--TTTTC
*
7438269 -AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * * ** *
7438326 AAAAAAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTTC
1 ---AAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTC
*
7438389 AAAAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAGATAAATTTTC
1 --AAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*** * ** * *
7438449 --AAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAGATTAAATTTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
7438505 TAAAAAAATATTTTTGAGG-AAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
1 -AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * *
7438563 TAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
* *
7438621 -AAAAAATATTTTTG-GGAAAAAGTTGAAAATATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
7438678 AAAAAAATAAAATTTTGAGGAAAAGTTGAAAGTATTAATTTTCC
1 AAAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
7438722 CTGCACAAGA
Statistics
Matches: 492, Mismatches: 59, Indels: 45
0.83 0.10 0.08
Matches are distributed among these distances:
56 45 0.09
57 75 0.15
58 78 0.16
59 112 0.23
60 74 0.15
61 50 0.10
62 53 0.11
63 5 0.01
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.36
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:7446765 original size:8 final size:8
Alignment explanation
Indices: 7446690--7446765 Score: 57
Period size: 8 Copynumber: 9.2 Consensus size: 8
7446680 CATTTAGGTA
7446690 TTCATTTT
1 TTCATTTT
7446698 CTCTCA-TTT
1 -T-TCATTTT
7446707 TTC-TTTT
1 TTCATTTT
7446714 TTCATATTT
1 TTCAT-TTT
*
7446723 TTTATTTTT
1 TTCA-TTTT
* *
7446732 TTCACTGT
1 TTCATTTT
*
7446740 TTCACTTT
1 TTCATTTT
*
7446748 TTCACTTT
1 TTCATTTT
7446756 TTCATTTT
1 TTCATTTT
7446764 TT
1 TT
7446766 TTACTTCATT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
7 8 0.14
8 28 0.50
9 16 0.29
10 4 0.07
ACGTcount: A:0.12, C:0.17, G:0.01, T:0.70
Consensus pattern (8 bp):
TTCATTTT
Found at i:7446765 original size:16 final size:16
Alignment explanation
Indices: 7446690--7446765 Score: 66
Period size: 16 Copynumber: 4.6 Consensus size: 16
7446680 CATTTAGGTA
7446690 TTCATTTTCTCTCA-TTT
1 TTCATTTT-T-TCACTTT
*
7446707 TTC-TTTTTTCATATTT
1 TTCATTTTTTCA-CTTT
* *
7446723 TTTATTTTTTTCACTGT
1 TTCA-TTTTTTCACTTT
*
7446740 TTCACTTTTTCACTTT
1 TTCATTTTTTCACTTT
7446756 TTCATTTTTT
1 TTCATTTTTT
7446766 TTACTTCATT
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
14 3 0.06
15 1 0.02
16 28 0.58
17 8 0.17
18 8 0.17
ACGTcount: A:0.12, C:0.17, G:0.01, T:0.70
Consensus pattern (16 bp):
TTCATTTTTTCACTTT
Found at i:7446778 original size:22 final size:21
Alignment explanation
Indices: 7446748--7446796 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
7446738 GTTTCACTTT
* *
7446748 TTCACTTTTTCATTTTTTTTAC
1 TTCATTTTTTCA-TGTTTTTAC
7446770 TTCATTTTTTTCATGTTTTTAC
1 TTCA-TTTTTTCATGTTTTTAC
7446792 TTCAT
1 TTCAT
7446797 CCATTATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 16 0.67
23 7 0.29
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.67
Consensus pattern (21 bp):
TTCATTTTTTCATGTTTTTAC
Found at i:7446783 original size:23 final size:22
Alignment explanation
Indices: 7446753--7446796 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7446743 ACTTTTTCAC
*
7446753 TTTTTCATTTTTTTTACTTCATT
1 TTTTTCA-TGTTTTTACTTCATT
7446776 TTTTTCATGTTTTTACTTCAT
1 TTTTTCATGTTTTTACTTCAT
7446797 CCATTATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.14, C:0.14, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTTTCATGTTTTTACTTCATT
Found at i:7449585 original size:16 final size:15
Alignment explanation
Indices: 7449564--7449593 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7449554 AGAATCCTAT
7449564 ATGCATAAATGAATGA
1 ATGCATAAAT-AATGA
7449580 ATGCATAAATAATG
1 ATGCATAAATAATG
7449594 TATGAATGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.50, C:0.07, G:0.17, T:0.27
Consensus pattern (15 bp):
ATGCATAAATAATGA
Found at i:7456258 original size:27 final size:27
Alignment explanation
Indices: 7456228--7456279 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
7456218 AAGTTGTCAA
7456228 GTTCATCCATAAGACCTTCTCCTATAT
1 GTTCATCCATAAGACCTTCTCCTATAT
* *
7456255 GTTCATTCATAAGACCTTGTCCTAT
1 GTTCATCCATAAGACCTTCTCCTAT
7456280 CCAGCAATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.10, T:0.38
Consensus pattern (27 bp):
GTTCATCCATAAGACCTTCTCCTATAT
Found at i:7460596 original size:15 final size:15
Alignment explanation
Indices: 7460558--7460606 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 15
7460548 ATCATTGGAT
7460558 AATTATTATTTATTTTCA
1 AATT-TTATTT-TTTT-A
7460576 AATTTTATTTTTTTA
1 AATTTTATTTTTTTA
*
7460591 AGTTTTACTTTTTTTA
1 AATTTTA-TTTTTTTA
7460607 TTTCTCCTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 7 0.24
16 12 0.41
17 6 0.21
18 4 0.14
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (15 bp):
AATTTTATTTTTTTA
Found at i:7461366 original size:43 final size:44
Alignment explanation
Indices: 7461293--7461420 Score: 118
Period size: 43 Copynumber: 3.0 Consensus size: 44
7461283 GCATAACATA
* * * *
7461293 AAAACTCCTCTAAACAGATGTTCAATAACTTTTG-AAAATAAAT
1 AAAACTCCTCTAAACAGAGGCTCAACAACTTTAGAAAAATAAAT
**
7461336 AAAACTCCTCTAAATTGAGGCTCAACAACTTTAGAAAAATAAAT
1 AAAACTCCTCTAAACAGAGGCTCAACAACTTTAGAAAAATAAAT
* ** * * * *
7461380 GATGCT-CTCCAACCAGAGGCTTAATAACTTT-GAAAAATAAA
1 AAAACTCCTCTAAACAGAGGCTCAACAACTTTAGAAAAATAAA
7461421 AGGCTCATTT
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
42 10 0.14
43 47 0.68
44 12 0.17
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (44 bp):
AAAACTCCTCTAAACAGAGGCTCAACAACTTTAGAAAAATAAAT
Found at i:7462041 original size:25 final size:25
Alignment explanation
Indices: 7462007--7462240 Score: 182
Period size: 25 Copynumber: 10.0 Consensus size: 25
7461997 GGGTTTCTCA
*
7462007 TCTTAAAGATTCTCATTTGAAAACT
1 TCTTAAAGATTCTCATTTGAAGACT
*
7462032 TCTTCAAGATTCTCATTT-AAGAC-
1 TCTTAAAGATTCTCATTTGAAGACT
* * *
7462055 TC--AAAAATTTTCATTTGAAGATT
1 TCTTAAAGATTCTCATTTGAAGACT
*
7462078 TCTTGAAGATTCTCATTT-AAGA--
1 TCTTAAAGATTCTCATTTGAAGACT
*
7462100 -CTTAAAGATTCTCATTTGAAGATT
1 TCTTAAAGATTCTCATTTGAAGACT
*
7462124 TCTTTAAA-ATTTTCATTTG-AGA--
1 TC-TTAAAGATTCTCATTTGAAGACT
* * * *
7462146 -CTAAAATATTCTCATTTGAGGATT
1 TCTTAAAGATTCTCATTTGAAGACT
7462170 TCTTAAAGATTCTCATTT-AAGAC-
1 TCTTAAAGATTCTCATTTGAAGACT
* *
7462193 TC--AAATATTCTCATTTG-AGTATT
1 TCTTAAAGATTCTCATTTGAAG-ACT
*
7462216 TCTTAAATATTCTCATTT-AAGACT
1 TCTTAAAGATTCTCATTTGAAGACT
7462240 T
1 T
7462241 AAAAATTCTC
Statistics
Matches: 168, Mismatches: 21, Indels: 41
0.73 0.09 0.18
Matches are distributed among these distances:
20 4 0.02
21 53 0.32
22 11 0.07
23 8 0.05
24 17 0.10
25 70 0.42
26 5 0.03
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.43
Consensus pattern (25 bp):
TCTTAAAGATTCTCATTTGAAGACT
Found at i:7462087 original size:46 final size:46
Alignment explanation
Indices: 7462015--7462261 Score: 320
Period size: 46 Copynumber: 5.4 Consensus size: 46
7462005 CATCTTAAAG
* * *
7462015 ATTCTCATTTGAAAACTTCTTCAAGATTCTCATTTAAGACTCAAAA
1 ATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTAAGACTCAAAA
* * * *
7462061 ATTTTCATTTGAAGATTTCTTGAAGATTCTCATTTAAGACTTAAAG
1 ATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTAAGACTCAAAA
* *
7462107 ATTCTCATTTGAAGATTTCTTTAAA-ATTTTCATTTGAGACT-AAAA
1 ATTCTCATTTGAAGATTTC-TTAAAGATTCTCATTTAAGACTCAAAA
* *
7462152 TATTCTCATTTGAGGATTTCTTAAAGATTCTCATTTAAGACTCAAAT
1 -ATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTAAGACTCAAAA
* *
7462199 ATTCTCATTTG-AGTATTTCTTAAATATTCTCATTTAAGACTTAAAA
1 ATTCTCATTTGAAG-ATTTCTTAAAGATTCTCATTTAAGACTCAAAA
*
7462245 ATTCTCATTTAAAGATT
1 ATTCTCATTTGAAGATT
7462262 CATAATTTTA
Statistics
Matches: 175, Mismatches: 20, Indels: 12
0.85 0.10 0.06
Matches are distributed among these distances:
45 9 0.05
46 157 0.90
47 9 0.05
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (46 bp):
ATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTAAGACTCAAAA
Found at i:7462268 original size:21 final size:21
Alignment explanation
Indices: 7462040--7462256 Score: 148
Period size: 21 Copynumber: 9.6 Consensus size: 21
7462030 CTTCTTCAAG
*
7462040 ATTCTCATTTAAGACTCAAAA
1 ATTCTCATTTAAGACTTAAAA
* * *
7462061 ATTTTCATTTGAAGATTTCTTGAAG
1 ATTCTCATTT-AAGA---CTTAAAA
*
7462086 ATTCTCATTTAAGACTTAAAG
1 ATTCTCATTTAAGACTTAAAA
*
7462107 ATTCTCATTTGAAGATTTCTTTAAA
1 ATTCTCATTT-AAGA---CTTAAAA
* *
7462132 ATTTTCATTTGAGAC-TAAAA
1 ATTCTCATTTAAGACTTAAAA
* *
7462152 TATTCTCATTTGAGGATTTCTTAAAG
1 -ATTCTCATTT-AAGA---CTTAAAA
* *
7462178 ATTCTCATTTAAGACTCAAAT
1 ATTCTCATTTAAGACTTAAAA
* *
7462199 ATTCTCATTTGAGTATTTCTTAAAT
1 ATTCTCATTTAAG-A---CTTAAAA
7462224 ATTCTCATTTAAGACTTAAAA
1 ATTCTCATTTAAGACTTAAAA
7462245 ATTCTCATTTAA
1 ATTCTCATTTAA
7462257 AGATTCATAA
Statistics
Matches: 156, Mismatches: 22, Indels: 36
0.73 0.10 0.17
Matches are distributed among these distances:
20 4 0.03
21 70 0.45
22 11 0.07
24 11 0.07
25 56 0.36
26 4 0.03
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (21 bp):
ATTCTCATTTAAGACTTAAAA
Found at i:7473168 original size:13 final size:13
Alignment explanation
Indices: 7473146--7473175 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7473136 AAATTCAACC
7473146 TTTTGCAATTTTT
1 TTTTGCAATTTTT
*
7473159 TTTTGTAATTTTT
1 TTTTGCAATTTTT
7473172 TTTT
1 TTTT
7473176 TGTTGTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.03, G:0.07, T:0.77
Consensus pattern (13 bp):
TTTTGCAATTTTT
Found at i:7475670 original size:169 final size:169
Alignment explanation
Indices: 7475387--7475701 Score: 513
Period size: 169 Copynumber: 1.9 Consensus size: 169
7475377 TGAGAATTAA
* * * *
7475387 TCACTAAAGCTCTACATGATGTGAACTTTAGGAGGATTCGGGATTTGTGTCATTTGGTTTAAGAT
1 TCACTAAAGCTCGACATGATGTGAACTGTAAGAGGATTCGGGATTTGTGTCATTTGGTTCAAGAT
* * * * *
7475452 CATCAATTGGAGGGCGCTGTTTATGGTGACCTGTGATAGACTAGTAAGCCATTGCTAATGCCAAT
66 CATCAATTGGAAGGCACTGCTTATGGTGACCTGTGACAGACTAGTAAGCCATTGCTAATGCCAAC
7475517 ACCAGCATTGAAAGACACAACACAGTTCAGTTTAAGATT
131 ACCAGCATTGAAAGACACAACACAGTTCAGTTTAAGATT
7475556 TCACTAAAGCTCGACATGATGTGAACTGTAAGAGGATTCGGGATTTGTGTCATTTGGTTCAAGAT
1 TCACTAAAGCTCGACATGATGTGAACTGTAAGAGGATTCGGGATTTGTGTCATTTGGTTCAAGAT
* * *
7475621 CATCAATTGGAAGGCACTGCTTATGGTGATCTGTGACAGATTGGTAAGCCATTGCTAATGCCAAC
66 CATCAATTGGAAGGCACTGCTTATGGTGACCTGTGACAGACTAGTAAGCCATTGCTAATGCCAAC
*
7475686 ACCTGCATTGAAAGAC
131 ACCAGCATTGAAAGAC
7475702 GTAAAATAGT
Statistics
Matches: 133, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
169 133 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (169 bp):
TCACTAAAGCTCGACATGATGTGAACTGTAAGAGGATTCGGGATTTGTGTCATTTGGTTCAAGAT
CATCAATTGGAAGGCACTGCTTATGGTGACCTGTGACAGACTAGTAAGCCATTGCTAATGCCAAC
ACCAGCATTGAAAGACACAACACAGTTCAGTTTAAGATT
Found at i:7476741 original size:52 final size:52
Alignment explanation
Indices: 7476638--7476741 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 52
7476628 ATAATCATAT
*
7476638 AAACTTGCCCATTAAGAATCTCTCTCCTCTTAGAATTCTTCTCTTGTAAGTC
1 AAACTTGCCCATTAAGAATCTCTCTCCTCTTAGAATTCTTCTCTTGCAAGTC
* * * * *
7476690 AAACTTGCCTATTAAGAATC-CATTTCCTTTTAGAATTCTTTTTTTGCAAGTC
1 AAACTTGCCCATTAAGAATCTC-TCTCCTCTTAGAATTCTTCTCTTGCAAGTC
7476742 TTCTTATCCA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
51 1 0.02
52 44 0.98
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (52 bp):
AAACTTGCCCATTAAGAATCTCTCTCCTCTTAGAATTCTTCTCTTGCAAGTC
Found at i:7476782 original size:11 final size:11
Alignment explanation
Indices: 7476766--7476807 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
7476756 ACAATATCTG
*
7476766 ACAAATCCCAA
1 ACAAATCTCAA
*
7476777 ACAAATCTCTA
1 ACAAATCTCAA
7476788 ACAAATCTCAA
1 ACAAATCTCAA
7476799 ACAAATCTC
1 ACAAATCTC
7476808 TTATGTGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:7476794 original size:22 final size:22
Alignment explanation
Indices: 7476753--7476808 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
7476743 TCTTATCCAT
* *
7476753 CAAAC-AATATCTGACAAATCC
1 CAAACAAATCTCTAACAAATCC
*
7476774 CAAACAAATCTCTAACAAATCT
1 CAAACAAATCTCTAACAAATCC
7476796 CAAACAAATCTCT
1 CAAACAAATCTCT
7476809 TATGTGATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
21 5 0.16
22 26 0.84
ACGTcount: A:0.48, C:0.29, G:0.02, T:0.21
Consensus pattern (22 bp):
CAAACAAATCTCTAACAAATCC
Found at i:7477071 original size:25 final size:25
Alignment explanation
Indices: 7477042--7477098 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
7477032 TCTCAAACCA
*
7477042 AGCTCTTCCTACATCTTAAACCTTT-
1 AGCTCTTCCCACATCTTAAA-CTTTC
* *
7477067 AGCTCTTCCCACTTCTTGAACTTTC
1 AGCTCTTCCCACATCTTAAACTTTC
7477092 AGCTCTT
1 AGCTCTT
7477099 TCACGTCTCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 4 0.14
25 24 0.86
ACGTcount: A:0.19, C:0.33, G:0.07, T:0.40
Consensus pattern (25 bp):
AGCTCTTCCCACATCTTAAACTTTC
Found at i:7477127 original size:25 final size:25
Alignment explanation
Indices: 7477089--7477160 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
7477079 TTCTTGAACT
*
7477089 TTCAGCTC-TTTCACGTCTCGAATC
1 TTCAACTCTTTTCACGTCTCGAATC
* * *
7477113 TTCGACTCTTTTCACATCTTGAATC
1 TTCAACTCTTTTCACGTCTCGAATC
* *
7477138 TTCAACTCTTCTCACGTTTCGAA
1 TTCAACTCTTTTCACGTCTCGAA
7477161 CATTCAGCTC
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
24 6 0.16
25 32 0.84
ACGTcount: A:0.19, C:0.31, G:0.10, T:0.40
Consensus pattern (25 bp):
TTCAACTCTTTTCACGTCTCGAATC
Found at i:7477789 original size:52 final size:52
Alignment explanation
Indices: 7477728--7477858 Score: 183
Period size: 52 Copynumber: 2.5 Consensus size: 52
7477718 AAAATTTTTC
** * *
7477728 TCTTCTTAGAATTCTTCTCTTGTAAGTTAAACTTGCCTATTAAGAATCCAT-TT
1 TCTT-TTAGAATTCTTCTCTTACAAGTGAAACTTACCTATTAAGAAT-CATCTT
7477781 TCTTTTAGAATTCTTCTCTTACAAGTGAAACTTACCTATTAAGAATCATCTT
1 TCTTTTAGAATTCTTCTCTTACAAGTGAAACTTACCTATTAAGAATCATCTT
* *
7477833 TCTCTTAGAATTCTTCTTTTACAAGT
1 TCTTTTAGAATTCTTCTCTTACAAGT
7477859 CTTCTTGTCC
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
51 3 0.04
52 64 0.90
53 4 0.06
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.45
Consensus pattern (52 bp):
TCTTTTAGAATTCTTCTCTTACAAGTGAAACTTACCTATTAAGAATCATCTT
Found at i:7477894 original size:21 final size:22
Alignment explanation
Indices: 7477870--7477914 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
7477860 TTCTTGTCCA
*
7477870 TCAAAC-AATATCTGACAAATC
1 TCAAACAAATATCTAACAAATC
*
7477891 TCAAACAAATCTCTAACAAATC
1 TCAAACAAATATCTAACAAATC
7477913 TC
1 TC
7477915 TTATGAGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (22 bp):
TCAAACAAATATCTAACAAATC
Found at i:7477915 original size:11 final size:11
Alignment explanation
Indices: 7477884--7477915 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
7477874 ACAATATCTG
*
7477884 ACAAATCTCAA
1 ACAAATCTCTA
7477895 ACAAATCTCTA
1 ACAAATCTCTA
7477906 ACAAATCTCT
1 ACAAATCTCT
7477916 TATGAGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (11 bp):
ACAAATCTCTA
Found at i:7479421 original size:32 final size:32
Alignment explanation
Indices: 7479366--7479429 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
7479356 CAACCATAGC
*
7479366 CATTCAATCTGAAATAAATCATATAAAAAAAA
1 CATTCAATCTGAAATAAACCATATAAAAAAAA
* *
7479398 CATTGAATTTGAAATAAACCATATAAAAAAAA
1 CATTCAATCTGAAATAAACCATATAAAAAAAA
7479430 TTACAAACAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (32 bp):
CATTCAATCTGAAATAAACCATATAAAAAAAA
Found at i:7480299 original size:37 final size:38
Alignment explanation
Indices: 7480227--7480301 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 38
7480217 TTGGCAAATG
* * * *
7480227 CAAAAGAAAATAGAAGCCACCTATGAACTTTCAAAGCA
1 CAAAACAAAATAAAAGCCACCTATGAACATACAAAGCA
*
7480265 CAAAACAAAATAAAAG-CACCTGTGAACATACAAAGCA
1 CAAAACAAAATAAAAGCCACCTATGAACATACAAAGCA
7480302 AAACATTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
37 18 0.56
38 14 0.44
ACGTcount: A:0.53, C:0.21, G:0.12, T:0.13
Consensus pattern (38 bp):
CAAAACAAAATAAAAGCCACCTATGAACATACAAAGCA
Found at i:7484032 original size:15 final size:15
Alignment explanation
Indices: 7484014--7484052 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
7484004 TGGACCGTTC
*
7484014 TAAATTTAAATTTTT
1 TAAATTTAAAATTTT
7484029 TAAATTTGAAAATTTT
1 TAAATTT-AAAATTTT
7484045 T-AATTTAA
1 TAAATTTAA
7484053 GTTATTCGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 2 0.09
15 12 0.55
16 8 0.36
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TAAATTTAAAATTTT
Found at i:7492873 original size:27 final size:27
Alignment explanation
Indices: 7492825--7492877 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7492815 CATTACAAAA
* **
7492825 AAAAAAAAAACAATAATTAAAAGTTTT
1 AAAAAAAAAACAACAACAAAAAGTTTT
7492852 AAAAAAAAAACAACAACAAAAAGTTT
1 AAAAAAAAAACAACAACAAAAAGTTT
7492878 GGATTTTGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.70, C:0.08, G:0.04, T:0.19
Consensus pattern (27 bp):
AAAAAAAAAACAACAACAAAAAGTTTT
Found at i:7494931 original size:103 final size:104
Alignment explanation
Indices: 7494848--7495042 Score: 250
Period size: 103 Copynumber: 1.9 Consensus size: 104
7494838 GACTCTATGT
* * * * **
7494848 TTTTGACTTAATGAACATTTATTATAGGCATGGCAATTATTGA-ATTTCTTTGAATAAAAATGTA
1 TTTTGACTTAACGAACATTTATTATAGGCATGACAATTACT-ATATTTATTTGAATAAAAACATA
* *
7494912 ATATTTGGTATTTTATTTTTTAT-TACATAACTTGATGGC
65 ATATTTGGTATTTAATTTTTTTTGTACATAACTTGATGGC
* * * *
7494951 TTTTGATTTAACGAGCATTTATTATGGGTATGACAATTACTATATTTATTTGAATAAAAACATAA
1 TTTTGACTTAACGAACATTTATTATAGGCATGACAATTACTATATTTATTTGAATAAAAACATAA
7495016 TATTTGGTATTTAAATTTTTTTTGTAC
66 TATTTGGTATTT-AATTTTTTTTGTAC
7495043 GTTTGATTTG
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
102 1 0.01
103 65 0.84
104 8 0.10
105 3 0.04
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (104 bp):
TTTTGACTTAACGAACATTTATTATAGGCATGACAATTACTATATTTATTTGAATAAAAACATAA
TATTTGGTATTTAATTTTTTTTGTACATAACTTGATGGC
Found at i:7495110 original size:107 final size:103
Alignment explanation
Indices: 7494891--7495111 Score: 248
Period size: 107 Copynumber: 2.1 Consensus size: 103
7494881 CAATTATTGA
** * * *
7494891 ATTTCTTTGAATAAAAATGTAATATTTGGTATTTTATTTTTTATTACATAACTTGATGGCTTTTG
1 ATTTCTTTGAATAAAAACATAATATTTGGTATTTAATTTTTTATTACATAACTTGATGACTTTTA
*
7494956 ATTTAACGAGCATTTATTATGGGTATGACAATTACTAT
66 ATTTAACGAGCATTTATTATGAGTATGACAATTACTAT
* * * * *
7494994 ATTTATTTGAATAAAAACATAATATTTGGTATTTAAATTTTTTTTGTACGTTTGATTTGATGACT
1 ATTTCTTTGAATAAAAACATAATATTTGGTATTT-AATTTTTTAT-TAC--ATAACTTGATGACT
* *
7495059 TTTAATTTAATGAGCATTTATTATGAGT-TTATCAATTAC-AGT
62 TTTAATTTAACGAGCATTTATTATGAGTATGA-CAATTACTA-T
*
7495101 GTTTCTTTGAA
1 ATTTCTTTGAA
7495112 GTTAAACGCG
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
103 31 0.32
104 8 0.08
105 3 0.03
106 3 0.03
107 52 0.54
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.49
Consensus pattern (103 bp):
ATTTCTTTGAATAAAAACATAATATTTGGTATTTAATTTTTTATTACATAACTTGATGACTTTTA
ATTTAACGAGCATTTATTATGAGTATGACAATTACTAT
Found at i:7513306 original size:47 final size:47
Alignment explanation
Indices: 7513253--7513343 Score: 139
Period size: 47 Copynumber: 1.9 Consensus size: 47
7513243 GTAACCAAAC
* *
7513253 CAAATCATGGATCAATCATTAAAAATTATCAT-AATCATCTTTATATA
1 CAAATCATGGATCAATC-TTAAAAATCATCATAAATCATCATTATATA
*
7513300 CAAATCATGGATCAATCTTTAAAATCATCATAAATCATCATTAT
1 CAAATCATGGATCAATCTTAAAAATCATCATAAATCATCATTAT
7513344 CATTAGTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
46 12 0.30
47 28 0.70
ACGTcount: A:0.44, C:0.16, G:0.04, T:0.35
Consensus pattern (47 bp):
CAAATCATGGATCAATCTTAAAAATCATCATAAATCATCATTATATA
Found at i:7513329 original size:23 final size:23
Alignment explanation
Indices: 7513255--7513330 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
7513245 AACCAAACCA
*
7513255 AATCATGGATCAATCATTAAAAAT
1 AATCATGGATCAATC-TTTAAAAT
* *
7513279 TATCAT-AATC-ATCTTTATATACA-
1 AATCATGGATCAATCTTTA-A-A-AT
7513302 AATCATGGATCAATCTTTAAAAT
1 AATCATGGATCAATCTTTAAAAT
*
7513325 CATCAT
1 AATCAT
7513331 AAATCATCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 13
0.68 0.10 0.22
Matches are distributed among these distances:
21 3 0.08
22 5 0.12
23 15 0.38
24 10 0.25
25 7 0.17
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (23 bp):
AATCATGGATCAATCTTTAAAAT
Found at i:7522313 original size:33 final size:33
Alignment explanation
Indices: 7522257--7522320 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
7522247 CAACCATAGC
*
7522257 CATTCAATCTGAAATAAATCATATAAAAAAAGA
1 CATTCAATCTGAAATAAACCATATAAAAAAAGA
* *
7522290 CATTGAATTTGAAATAAACCATATAAAAAAA
1 CATTCAATCTGAAATAAACCATATAAAAAAA
7522321 TTACAAACAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.58, C:0.11, G:0.06, T:0.25
Consensus pattern (33 bp):
CATTCAATCTGAAATAAACCATATAAAAAAAGA
Found at i:7522702 original size:17 final size:17
Alignment explanation
Indices: 7522670--7522703 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7522660 CATATGAAAA
* *
7522670 CCCTAAATTCAGATAAC
1 CCCTAAATACAAATAAC
7522687 CCCTAAATACAAATAAC
1 CCCTAAATACAAATAAC
7522704 ACCAACATGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.29, G:0.03, T:0.21
Consensus pattern (17 bp):
CCCTAAATACAAATAAC
Found at i:7523252 original size:2 final size:2
Alignment explanation
Indices: 7523247--7523276 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7523237 TAAGATAGTG
7523247 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7523277 AACCCTACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7526908 original size:15 final size:15
Alignment explanation
Indices: 7526890--7526928 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
7526880 TGGACCGTTC
*
7526890 TAAATTTAAATTTTT
1 TAAATTTAAAATTTT
7526905 TAAATTTGAAAATTTT
1 TAAATTT-AAAATTTT
7526921 T-AATTTAA
1 TAAATTTAA
7526929 GTTATTCGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 2 0.09
15 12 0.55
16 8 0.36
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TAAATTTAAAATTTT
Found at i:7536854 original size:21 final size:21
Alignment explanation
Indices: 7536805--7536854 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
7536795 AAGTTTAAAA
7536805 ATTAAAAAAAAATCATAAGTT
1 ATTAAAAAAAAATCATAAGTT
* *
7536826 ATTCAAAAAAATATTCATATG-T
1 ATT-AAAAAAA-AATCATAAGTT
7536848 ATTAAAA
1 ATTAAAA
7536855 TTTAAATATC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 7 0.28
22 11 0.44
23 7 0.28
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (21 bp):
ATTAAAAAAAAATCATAAGTT
Found at i:7537799 original size:103 final size:106
Alignment explanation
Indices: 7537658--7537897 Score: 274
Period size: 103 Copynumber: 2.3 Consensus size: 106
7537648 GTTTGACTCA
* * * * *
7537658 ATGGTTTTTGACTTAATGAACATTTATTAT-AGGCATGGCAATTATTGA-ATTTCTTTGAATAAA
1 ATGGCTTTTGATTTAATGAGCATTTATTATGAGGCATGGCAATTACT-ATATTTATTTGAATAAA
** *
7537721 AATGCAATATTTGACATTTTATTTTTTGT-TACG-TAACTTG
65 AACACAATATTTGACATTTCATTTTTTGTATACGTTAACTTG
* * * *
7537761 ATGGCTTTTGATTTAACGAGCATTTATTATGA-GTATGGCAATTACTATCTTTATTTGAATAGAA
1 ATGGCTTTTGATTTAATGAGCATTTATTATGAGGCATGGCAATTACTATATTTATTTGAATAAAA
* * *
7537825 ACACAATATTTGGCATTTCATTTTTTTTATACGTTTGACTTG
66 ACACAATATTTGACATTTCATTTTTTGTATACG-TTAACTTG
* *
7537867 ATGGCTTTTGATTTAATAAGTATTTATTATG
1 ATGGCTTTTGATTTAATGAGCATTTATTATG
7537898 GATTTGTCAA
Statistics
Matches: 114, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
102 1 0.01
103 74 0.65
104 5 0.04
106 34 0.30
ACGTcount: A:0.30, C:0.09, G:0.15, T:0.46
Consensus pattern (106 bp):
ATGGCTTTTGATTTAATGAGCATTTATTATGAGGCATGGCAATTACTATATTTATTTGAATAAAA
ACACAATATTTGACATTTCATTTTTTGTATACGTTAACTTG
Found at i:7537938 original size:106 final size:103
Alignment explanation
Indices: 7537678--7537925 Score: 261
Period size: 103 Copynumber: 2.4 Consensus size: 103
7537668 ACTTAATGAA
* * *
7537678 CATTTATTAT-AGGCATGGCAATTATTGA-ATTTCTTTGAATAAAAATGCAATATTTGACATTTT
1 CATTTATTATGA-GTATGGCAATTACT-ATATTTCTTTGAATAAAAATGCAATATTTGACATTTC
*
7537741 ATTTTTTGTTACGTAACTTGATGGCTTTTGATTTAACGAG
64 ATTTTTTGTTACGTAACTTGATGGCTTTTGATTTAACAAG
* * * ** *
7537781 CATTTATTATGAGTATGGCAATTACTATCTTTATTTGAATAGAAACACAATATTTGGCATTTCAT
1 CATTTATTATGAGTATGGCAATTACTATATTTCTTTGAATAAAAATGCAATATTTGACATTTCAT
* * *
7537846 TTTTTTTATACGTTTGACTTGATGGCTTTTGATTTAATAAG
66 TTTTTGT-TACG--TAACTTGATGGCTTTTGATTTAACAAG
* * *
7537887 TATTTATTATG-GATTTGTCAATTAC-AGTATTTCTTTGAA
1 CATTTATTATGAG-TATGGCAATTACTA-TATTTCTTTGAA
7537926 GCTAAATGCA
Statistics
Matches: 120, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
102 1 0.01
103 58 0.48
104 5 0.04
105 2 0.02
106 54 0.45
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (103 bp):
CATTTATTATGAGTATGGCAATTACTATATTTCTTTGAATAAAAATGCAATATTTGACATTTCAT
TTTTTGTTACGTAACTTGATGGCTTTTGATTTAACAAG
Found at i:7538396 original size:2 final size:2
Alignment explanation
Indices: 7538383--7538429 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
7538373 ATCTTTCCTC
* *
7538383 AT AT AT AA AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7538425 AT AT A
1 AT AT A
7538430 AATGGATAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7547870 original size:2 final size:2
Alignment explanation
Indices: 7547863--7547890 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7547853 GGTATAAGTT
7547863 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7547891 CATTTAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7548592 original size:103 final size:103
Alignment explanation
Indices: 7548485--7548765 Score: 296
Period size: 103 Copynumber: 2.7 Consensus size: 103
7548475 TTTAAAACAG
* * * * * *
7548485 AAATGTAGTATTTGGCATTTAATTTTTTTTGTGTTTGATTTTATGTTTTTGACTTAATGAACATT
1 AAATGTAATATTTGGTATTTAATTTTTTTTGTGTTTGATTTGATGCTTTTGATTTAATGAGCATT
* * *
7548550 TATTATAGGCATGGCAATTATTGA-ATTTCTTTGAATAA
66 TATTATAGGCATGACAATTACT-ATATTTATTTGAATAA
* * *** * * *
7548588 AAATGTAATATTTGGTATTTTATTTTTTAT-TACATAACTTGATGGCTTTTGATTTAACGAGCAT
1 AAATGTAATATTTGGTATTTAATTTTTTTTGTGTTTGATTTGAT-GCTTTTGATTTAATGAGCAT
* *
7548652 TTATTATGGGTATGACAATTACTATATTTATTTGAATAA
65 TTATTATAGGCATGACAATTACTATATTTATTTGAATAA
** *
7548691 AAACATAATATTTGGTATTTAAATTTTTTTTGTACGTTTGATTTGATGACTTTTAATTTAATGAG
1 AAATGTAATATTTGGTATTT-AATTTTTTTTGT--GTTTGATTTGATG-CTTTTGATTTAATGAG
7548756 CATTTATTAT
62 CATTTATTAT
7548766 GAGTTTATCA
Statistics
Matches: 141, Mismatches: 30, Indels: 10
0.78 0.17 0.06
Matches are distributed among these distances:
102 8 0.06
103 92 0.65
104 8 0.06
105 1 0.01
106 1 0.01
107 31 0.22
ACGTcount: A:0.30, C:0.06, G:0.14, T:0.50
Consensus pattern (103 bp):
AAATGTAATATTTGGTATTTAATTTTTTTTGTGTTTGATTTGATGCTTTTGATTTAATGAGCATT
TATTATAGGCATGACAATTACTATATTTATTTGAATAA
Found at i:7548793 original size:107 final size:103
Alignment explanation
Indices: 7548574--7548794 Score: 248
Period size: 107 Copynumber: 2.1 Consensus size: 103
7548564 CAATTATTGA
** * * *
7548574 ATTTCTTTGAATAAAAATGTAATATTTGGTATTTTATTTTTTATTACATAACTTGATGGCTTTTG
1 ATTTCTTTGAATAAAAACATAATATTTGGTATTTAATTTTTTATTACATAACTTGATGACTTTTA
*
7548639 ATTTAACGAGCATTTATTATGGGTATGACAATTACTAT
66 ATTTAACGAGCATTTATTATGAGTATGACAATTACTAT
* * * * *
7548677 ATTTATTTGAATAAAAACATAATATTTGGTATTTAAATTTTTTTTGTACGTTTGATTTGATGACT
1 ATTTCTTTGAATAAAAACATAATATTTGGTATTT-AATTTTTTAT-TAC--ATAACTTGATGACT
* *
7548742 TTTAATTTAATGAGCATTTATTATGAGT-TTATCAATTAC-AGT
62 TTTAATTTAACGAGCATTTATTATGAGTATGA-CAATTACTA-T
*
7548784 GTTTCTTTGAA
1 ATTTCTTTGAA
7548795 GTTAAACGCG
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
103 31 0.32
104 8 0.08
105 3 0.03
106 3 0.03
107 52 0.54
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.49
Consensus pattern (103 bp):
ATTTCTTTGAATAAAAACATAATATTTGGTATTTAATTTTTTATTACATAACTTGATGACTTTTA
ATTTAACGAGCATTTATTATGAGTATGACAATTACTAT
Found at i:7560246 original size:2 final size:2
Alignment explanation
Indices: 7560239--7560269 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7560229 AAAGTTTGTT
*
7560239 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7560270 TAATGAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7561788 original size:58 final size:57
Alignment explanation
Indices: 7561724--7562006 Score: 389
Period size: 58 Copynumber: 4.9 Consensus size: 57
7561714 TTTCTTGTTC
*
7561724 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAATTTTAATTT
1 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTAA-TT
* *
7561781 CGAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTTGAAAATTT-ATT
1 -AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTTTGAAAATTTAATT
7561840 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTATTTTTTTTGAAAATTT-ATT
1 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTTTGAAAATTTAATT
*
7561898 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGAAACTTTAATTT
1 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTAA-TT
* * *
7561954 CGAGG-AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGGAAATTT
1 -AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT
7562007 TATTTTATGT
Statistics
Matches: 207, Mismatches: 10, Indels: 16
0.89 0.04 0.07
Matches are distributed among these distances:
54 13 0.06
55 1 0.00
56 35 0.17
57 3 0.01
58 136 0.66
59 2 0.01
60 3 0.01
61 14 0.07
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (57 bp):
AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTAATT
Found at i:7564488 original size:17 final size:16
Alignment explanation
Indices: 7564461--7564512 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
7564451 ATAATTAGAC
7564461 AAATAAAAATACAAAAAT
1 AAAT-AAAATA-AAAAAT
*
7564479 AAATAAAATAAAAGAT
1 AAATAAAATAAAAAAT
*
7564495 AAAAAATAATAAAAAAT
1 AAATAA-AATAAAAAAT
7564512 A
1 A
7564513 TATATATTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
16 10 0.33
17 16 0.53
18 4 0.13
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (16 bp):
AAATAAAATAAAAAAT
Found at i:7564509 original size:23 final size:23
Alignment explanation
Indices: 7564461--7564508 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
7564451 ATAATTAGAC
7564461 AAATAAAAATACAAAAATAAATA
1 AAATAAAAATACAAAAATAAATA
7564484 AAATAAAAGATA-AAAAAT-AATA
1 AAATAAAA-ATACAAAAATAAATA
7564506 AAA
1 AAA
7564509 AATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 7 0.29
23 14 0.58
24 3 0.12
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (23 bp):
AAATAAAAATACAAAAATAAATA
Found at i:7564937 original size:16 final size:17
Alignment explanation
Indices: 7564904--7564937 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7564894 TTTTTATATA
7564904 ATTAAAATATAATTTAT
1 ATTAAAATATAATTTAT
*
7564921 ATTAAAA-ATATTTTAT
1 ATTAAAATATAATTTAT
7564937 A
1 A
7564938 AATATTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTAAAATATAATTTAT
Found at i:7567853 original size:14 final size:14
Alignment explanation
Indices: 7567834--7567878 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
7567824 TTTTGTTATA
7567834 TATATATATATATT
1 TATATATATATATT
* *
7567848 TTTATATTTATATT
1 TATATATATATATT
* *
7567862 TATATTTACATATT
1 TATATATATATATT
7567876 TAT
1 TAT
7567879 CATTCTTATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (14 bp):
TATATATATATATT
Found at i:7567874 original size:20 final size:20
Alignment explanation
Indices: 7567831--7567878 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7567821 CCATTTTGTT
* **
7567831 ATATATATATATATATTTTT
1 ATATTTATATATATATTTAC
*
7567851 ATATTTATATTTATATTTAC
1 ATATTTATATATATATTTAC
7567871 ATATTTAT
1 ATATTTAT
7567879 CATTCTTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
ATATTTATATATATATTTAC
Found at i:7567943 original size:26 final size:27
Alignment explanation
Indices: 7567891--7567946 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7567881 TTCTTATAAG
* *
7567891 TTTTGTTATTATATATTTGCATCTATT
1 TTTTATTATTATAGATTTGCATCTATT
7567918 TTTTATTATTAATAGATTTG-AT-TATT
1 TTTTATTATT-ATAGATTTGCATCTATT
7567944 TTT
1 TTT
7567947 AAAAAATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 7 0.27
27 11 0.42
28 8 0.31
ACGTcount: A:0.25, C:0.04, G:0.07, T:0.64
Consensus pattern (27 bp):
TTTTATTATTATAGATTTGCATCTATT
Found at i:7570637 original size:21 final size:20
Alignment explanation
Indices: 7570595--7570638 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
7570585 AGTTTAGGGT
* **
7570595 TTTGGGTTTTGGGTTTTGGA
1 TTTGGGTTTAGGGTTTCAGA
7570615 TTTGGGATTTAGGGTTTCAGA
1 TTTGGG-TTTAGGGTTTCAGA
7570636 TTT
1 TTT
7570639 AAGGTTTCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.11, C:0.02, G:0.34, T:0.52
Consensus pattern (20 bp):
TTTGGGTTTAGGGTTTCAGA
Found at i:7570639 original size:14 final size:14
Alignment explanation
Indices: 7570620--7570654 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7570610 TTGGATTTGG
*
7570620 GATTTAGGGTTTCA
1 GATTTAAGGTTTCA
7570634 GATTTAAGGTTTCA
1 GATTTAAGGTTTCA
*
7570648 GGTTTAA
1 GATTTAA
7570655 TTTATGTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.06, G:0.26, T:0.43
Consensus pattern (14 bp):
GATTTAAGGTTTCA
Found at i:7571445 original size:26 final size:27
Alignment explanation
Indices: 7571412--7571468 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 27
7571402 TTACCAAATC
7571412 ATTATAATATAT-CTCCTATCATAA-TT
1 ATTATAATAT-TCCTCCTATCATAACTT
*
7571438 ATTATAATATTCCTCTTATCATAACTT
1 ATTATAATATTCCTCCTATCATAACTT
7571465 ATTA
1 ATTA
7571469 AAATTACTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 1 0.04
26 21 0.75
27 6 0.21
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (27 bp):
ATTATAATATTCCTCCTATCATAACTT
Found at i:7573132 original size:28 final size:28
Alignment explanation
Indices: 7573066--7573136 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 28
7573056 CTTTTTTCTT
*
7573066 TTTATCTATTAATA-TTTTTATTATTTA
1 TTTATCTATTATTATTTTTTATTATTTA
*
7573093 TTT-GCT-TT-TTATTTTTTATTA-TTA
1 TTTATCTATTATTATTTTTTATTATTTA
7573117 TTTATCTAATTATTATTTTT
1 TTTATCT-ATTATTATTTTT
7573137 GTTATCTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
24 8 0.22
25 13 0.36
26 2 0.06
27 5 0.14
28 8 0.22
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.70
Consensus pattern (28 bp):
TTTATCTATTATTATTTTTTATTATTTA
Found at i:7573563 original size:6 final size:6
Alignment explanation
Indices: 7573552--7573639 Score: 58
Period size: 6 Copynumber: 14.5 Consensus size: 6
7573542 TTTAATATTC
* * *
7573552 TTTTAT TTTTAT CTTTA- TTTTAC TTTTA- TTTTAT TTTACTTT TCTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT--TAT T-TTTAT
* *
7573601 TTTTAT TTTCAC TTTTA- TTTTA- TTTTATT ATTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T -TTTTAT TTT
7573640 CTTTAAATTA
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 19 0.28
6 34 0.51
7 4 0.06
8 8 0.12
9 2 0.03
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:7573573 original size:5 final size:5
Alignment explanation
Indices: 7573552--7573639 Score: 83
Period size: 5 Copynumber: 16.8 Consensus size: 5
7573542 TTTAATATTC
*
7573552 TTTTA TTTTTA TCTTTA TTTTA CTTTTA TTTTA TTTTA CTTTT- CTTTA
1 TTTTA -TTTTA T-TTTA TTTTA -TTTTA TTTTA TTTTA -TTTTA TTTTA
7573600 TTTTTA TTTTCA CTTTTA TTTTA TTTTA --TTA TTTTA TTTT
1 -TTTTA TTTT-A -TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
7573640 CTTTAAATTA
Statistics
Matches: 71, Mismatches: 2, Indels: 19
0.77 0.02 0.21
Matches are distributed among these distances:
3 3 0.04
4 3 0.04
5 36 0.51
6 25 0.35
7 4 0.06
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:7573644 original size:22 final size:22
Alignment explanation
Indices: 7573553--7573644 Score: 95
Period size: 22 Copynumber: 4.2 Consensus size: 22
7573543 TTAATATTCT
7573553 TTTATTTTTATCTTTA-TTTTAC
1 TTTATTTTTAT-TTTACTTTTAC
7573575 TTT-TATTTTATTTTACTTTT-C
1 TTTAT-TTTTATTTTACTTTTAC
*
7573596 TTTATTTTTATTTTCACTTTTAT
1 TTTATTTTTATTTT-ACTTTTAC
7573619 TTTATTTTATTATTTTA-TTTT-C
1 TTTA-TTT-TTATTTTACTTTTAC
7573641 TTTA
1 TTTA
7573645 AATTAAATCC
Statistics
Matches: 61, Mismatches: 2, Indels: 14
0.79 0.03 0.18
Matches are distributed among these distances:
21 18 0.30
22 24 0.39
23 8 0.13
24 4 0.07
25 7 0.11
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTATTTTTATTTTACTTTTAC
Found at i:7573723 original size:59 final size:57
Alignment explanation
Indices: 7573657--7573926 Score: 300
Period size: 59 Copynumber: 4.7 Consensus size: 57
7573647 TTAAATCCAA
*
7573657 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTTGAAAATAAGCTTTCC
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCC-TTGAAAATAA-ATTTCC
* * **
7573716 AAAAAATATTTTCAGGA-AAAAGTTGAAAGTATCAATTTTTCC-TAAAAATAAATTTTT
1 AAAAAATATTTT-TGGAGAAAAGTTGAAAGTATCAA-TTTTCCTTGAAAATAAATTTCC
* * *
7573773 AAAAAA-AGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCC
1 AAAAAATA--TTTTTGGA-GAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAA-TTTCC
* * *
7573833 -AAAAATA-TTTTGGAGAAAAGTTGAAAGTATCAATTTTCTTTGAAATTAAAATTTCT
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAATTTCC
* *
7573889 AAAAAATA-CTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTT
7573927 TCCTGCACAA
Statistics
Matches: 182, Mismatches: 18, Indels: 24
0.81 0.08 0.11
Matches are distributed among these distances:
56 36 0.20
57 55 0.30
58 18 0.10
59 60 0.33
60 13 0.07
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (57 bp):
AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTCC
Found at i:7577886 original size:22 final size:21
Alignment explanation
Indices: 7577835--7577887 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 21
7577825 GAAGATGATG
7577835 AAAAAAAAATGAAAAAATGGA
1 AAAAAAAAATGAAAAAATGGA
* *
7577856 GAAAAAAAATGAAAAAAATGAA
1 AAAAAAAAATG-AAAAAATGGA
7577878 AAAATAAAAA
1 AAAA-AAAAA
7577888 AAAAAGATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 10 0.37
22 12 0.44
23 5 0.19
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.09
Consensus pattern (21 bp):
AAAAAAAAATGAAAAAATGGA
Found at i:7579835 original size:41 final size:41
Alignment explanation
Indices: 7579762--7580239 Score: 358
Period size: 41 Copynumber: 11.5 Consensus size: 41
7579752 GATTGTCAAT
* *
7579762 GAGCAATTTATTTTTCCAAAGTTCCGTTGCCTCTATTTAGAA
1 GAGCAATTTATTTTT-CAAAGTTTCGTTGCCTCTATTTAGAG
*
7579804 GAGCAATTTATTTTTCAAAGTTTCGTTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTTTCGTTGCCTCTATTTAGAG
* * * *
7579845 GAGCAATTTATTTTTCCAAAGTTTCGTTGCCTTTGTTTAAAA
1 GAGCAATTTATTTTT-CAAAGTTTCGTTGCCTCTATTTAGAG
* * * *
7579887 GAGCAATTTACTTTCCAAAGTTTCATTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTTTCGTTGCCTCTATTTAGAG
* ** * *
7579928 GAGCAATTTA-CTTTCAAAAGTTGAGGTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTC-AAAGTTTCGTTGCCTCTATTTAGAG
**
7579969 GAGCAATTTATTTTTCAAAGTCACGGTTGCCTCTATTTAGAG
1 GAGCAATTTATTTTTCAAAGTTTC-GTTGCCTCTATTTAGAG
* * * *
7580011 GA-CAATTTATATTCCAAAATTGT-GGTGCCTCTATTTAGAG
1 GAGCAATTTATTTTTCAAAGTT-TCGTTGCCTCTATTTAGAG
* * *
7580051 GAGCAATTTACTCTTCAAAAG--TCATTAAGCCTCTGA-TTAGAG
1 GAGCAATTTATTTTTC-AAAGTTTCGTT--GCCTCT-ATTTAGAG
* * *
7580093 GAGCCATTTACTTTTCAAAAG--TCGTTGAGCCTCTGA-TTAGAA
1 GAGCAATTTATTTTTC-AAAGTTTCGTT--GCCTCT-ATTTAGAG
7580135 GAGC--TTTAATTATTTTCAAAG--TCGTTGAGCCTCTGA-TTAGAG
1 GAGCAATTT-A-T-TTTTCAAAGTTTCGTT--GCCTCT-ATTTAGAG
* * *
7580177 GAGCCATTTACTTTTCAAAG-TT-GTTGAGCCTCTAATTAGAG
1 GAGCAATTTATTTTTCAAAGTTTCGTT--GCCTCTATTTAGAG
*
7580218 GAGCCATTTATTTTTTCAAAGT
1 GAGCAATTTA-TTTTTCAAAGT
7580240 CGTTAAGCCT
Statistics
Matches: 370, Mismatches: 46, Indels: 39
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.00
40 26 0.07
41 167 0.45
42 166 0.45
43 7 0.02
44 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (41 bp):
GAGCAATTTATTTTTCAAAGTTTCGTTGCCTCTATTTAGAG
Found at i:7579998 original size:124 final size:121
Alignment explanation
Indices: 7579762--7580240 Score: 397
Period size: 124 Copynumber: 3.8 Consensus size: 121
7579752 GATTGTCAAT
* * *
7579762 GAGCAATTTATTTTTCCAAAGTTCCGTTGCCTCTATTTAGAAGAGCAATTTATTTTTC-AAAGTT
1 GAGCAATTTA--TTTCCAAAGTTTCGTTGCCTCTATTTAGAGGAGCAATTTA-CTTTCAAAAGTT
* ** * *
7579826 TCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTTTCGTTGCCTTTGTTTAAAA
63 TAG-TGCCTCTGTTTAGAGGAGCAATTTATTTTT-CAAAGTCACGTTGCCTCTATTTAAAA
* * *
7579887 GAGCAATTTACTTTCCAAAGTTTCATTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTTGA
1 GAGCAATTTA-TTTCCAAAGTTTCGTTGCCTCTATTTAGAGGAGCAATTTACTTTCAAAAGTTTA
* *
7579952 GGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCACGGTTGCCTCTATTTAGAG
65 -GTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCAC-GTTGCCTCTATTTAAAA
* *
7580011 GA-CAATTTATATTCCAAAATTGT-GGTGCCTCTATTTAGAGGAGCAATTTACTCTTCAAAAGTC
1 GAGCAATTTAT-TTCCAAAGTT-TCGTTGCCTCTATTTAGAGGAGCAATTTACT-TTCAAAAGT-
* * * * *
7580074 ATTA-AGCCTCTGATTAGAGGAGCCATTTACTTTTCAAAAGT--CGTTGAGCCTCTGA-TTAGAA
62 -TTAGTGCCTCTGTTTAGAGGAGCAATTTATTTTTC-AAAGTCACGTT--GCCTCT-ATTTAAAA
* *
7580135 GAGCTTTAA-TTATTTTCAAAG--TCGTTGAGCCTCTGA-TTAGAGGAGCCATTTACTTTTC-AA
1 GAGC---AATTTATTTCCAAAGTTTCGTT--GCCTCT-ATTTAGAGGAGCAATTTAC-TTTCAAA
* * ** *
7580195 AGTTGTTGAGCCTCTAATTAGAGGAGCCATTTATTTTTTCAAAGTC
59 AGTT-TAGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTTCAAAGTC
7580241 GTTAAGCCTC
Statistics
Matches: 298, Mismatches: 31, Indels: 49
0.79 0.08 0.13
Matches are distributed among these distances:
122 4 0.01
123 56 0.19
124 140 0.47
125 52 0.17
126 38 0.13
127 6 0.02
128 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (121 bp):
GAGCAATTTATTTCCAAAGTTTCGTTGCCTCTATTTAGAGGAGCAATTTACTTTCAAAAGTTTAG
TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCACGTTGCCTCTATTTAAAA
Found at i:7580092 original size:42 final size:41
Alignment explanation
Indices: 7579762--7580260 Score: 350
Period size: 42 Copynumber: 12.0 Consensus size: 41
7579752 GATTGTCAAT
* *
7579762 GAGCAATTTATTTTTCCAAAGTTCCGTT--GCCTCT-ATTTAGAA
1 GAGCAATTTACTTTT-CAAAG-T-CGTTGAGCCTCTGA-TTAGAG
* *
7579804 GAGCAATTTATTTTTCAAAGTTTCGTT--GCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCAAAG--TCGTTGAGCCTCTGATTAGAG
* * * * *
7579845 GAGCAATTTATTTTTCCAAAGTTTCGTT--GCCTTTGTTTAAAA
1 GAGCAATTTACTTTT-CAAAG--TCGTTGAGCCTCTGATTAGAG
* * *
7579887 GAGCAATTTACTTTCCAAAGT--TTCATTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCAAAGTCGTTGA--GCCTCTGATTAGAG
* ** * *
7579928 GAGCAATTTAC-TTTCAAAAGTTGAGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTC-AAAGTCGTTGAGCCTCTGATTAGAG
*
7579969 GAGCAATTTATTTTTCAAAGTCACGGTT--GCCTCT-ATTTAGAG
1 GAGCAATTTACTTTTCAAAGT--C-GTTGAGCCTCTGA-TTAGAG
* * * * *
7580011 GA-CAATTTA-TATTCCAAAATTGTGGTGCCTCT-ATTTAGAG
1 GAGCAATTTACT-TTTCAAAGTCGTTGAGCCTCTGA-TTAGAG
* * *
7580051 GAGCAATTTACTCTTCAAAAGTCATTAAGCCTCTGATTAGAG
1 GAGCAATTTACTTTTC-AAAGTCGTTGAGCCTCTGATTAGAG
* *
7580093 GAGCCATTTACTTTTCAAAAGTCGTTGAGCCTCTGATTAGAA
1 GAGCAATTTACTTTTC-AAAGTCGTTGAGCCTCTGATTAGAG
7580135 GAGCTTTAA-TTA-TTTTCAAAGTCGTTGAGCCTCTGATTAGAG
1 GAGC---AATTTACTTTTCAAAGTCGTTGAGCCTCTGATTAGAG
* * *
7580177 GAGCCATTTACTTTTCAAAGTTGTTGAGCCTCTAATTAGAG
1 GAGCAATTTACTTTTCAAAGTCGTTGAGCCTCTGATTAGAG
* * *
7580218 GAGCCATTTATTTTTTCAAAGTCGTTAAGCCTCTGATTAGAG
1 GAGCAATTTA-CTTTTCAAAGTCGTTGAGCCTCTGATTAGAG
7580260 G
1 G
7580261 CCTCTGATTA
Statistics
Matches: 383, Mismatches: 46, Indels: 56
0.79 0.09 0.12
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
39 2 0.01
40 23 0.06
41 157 0.41
42 186 0.49
43 6 0.02
44 4 0.01
45 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (41 bp):
GAGCAATTTACTTTTCAAAGTCGTTGAGCCTCTGATTAGAG
Found at i:7580241 original size:83 final size:83
Alignment explanation
Indices: 7579762--7580260 Score: 389
Period size: 83 Copynumber: 6.0 Consensus size: 83
7579752 GATTGTCAAT
* * ** ** * *
7579762 GAGCAATTTATTTTTCCAAAGTTCCGTTGCCTCTATTTAGAAGAGCAATTTATTTTTCAAAGTTT
1 GAGCAATTTACTTTTCAAAAGTTGTGGAGCCTCTAATTAGAGGAGCAATTTATTTTTCAAAG--T
*
7579827 CGTT--GCCTCTGTTTAGAG
64 CGTTAAGCCTCTGATTAGAG
* * ** * ** * * * *
7579845 GAGCAATTTATTTTTCCAAAGTT-TCGTTGCCTTTGTTTAAAAGAGCAATTTACTTTCCAAAGT-
1 GAGCAATTTACTTTTCAAAAGTTGT-GGAGCCTCTAATTAGAGGAGCAATTTATTTTTCAAAGTC
* *
7579908 -TTCATTGCCTCTGTTTAGAG
65 GTT-A-AGCCTCTGATTAGAG
* * **
7579928 GAGCAATTTAC-TTTCAAAAGTTGAGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCA
1 GAGCAATTTACTTTTCAAAAGTTGTGGAGCCTCTAATTAGAGGAGCAATTTATTTTTCAAAGT--
7579992 CGGTT--GCCTCT-ATTTAGAG
64 C-GTTAAGCCTCTGA-TTAGAG
* * * * *
7580011 GA-CAATTTA-TATTCCAAAA-TTGTGGTGCCTCTATTTAGAGGAGCAATTTACTCTTCAAAAGT
1 GAGCAATTTACT-TTTCAAAAGTTGTGGAGCCTCTAATTAGAGGAGCAATTTATTTTTC-AAAGT
*
7580073 CATTAAGCCTCTGATTAGAG
64 CGTTAAGCCTCTGATTAGAG
* * * * *
7580093 GAGCCATTTACTTTTCAAAAGTCGTTGAGCCTCTGATTAGAAGAGC--TTTAATTATTTTCAAAG
1 GAGCAATTTACTTTTCAAAAGTTGTGGAGCCTCTAATTAGAGGAGCAATTT-A-T-TTTTCAAAG
*
7580156 TCGTTGAGCCTCTGATTAGAG
63 TCGTTAAGCCTCTGATTAGAG
* * *
7580177 GAGCCATTTACTTTTC-AAAGTTGTTGAGCCTCTAATTAGAGGAGCCATTTATTTTTTCAAAGTC
1 GAGCAATTTACTTTTCAAAAGTTGTGGAGCCTCTAATTAGAGGAGCAATTTA-TTTTTCAAAGTC
7580241 GTTAAGCCTCTGATTAGAG
65 GTTAAGCCTCTGATTAGAG
7580260 G
1 G
7580261 CCTCTGATTA
Statistics
Matches: 352, Mismatches: 38, Indels: 52
0.80 0.09 0.12
Matches are distributed among these distances:
79 2 0.01
80 2 0.01
81 2 0.01
82 99 0.28
83 176 0.50
84 62 0.18
85 7 0.02
87 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (83 bp):
GAGCAATTTACTTTTCAAAAGTTGTGGAGCCTCTAATTAGAGGAGCAATTTATTTTTCAAAGTCG
TTAAGCCTCTGATTAGAG
Found at i:7580265 original size:14 final size:14
Alignment explanation
Indices: 7580246--7580274 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7580236 AAGTCGTTAA
7580246 GCCTCTGATTAGAG
1 GCCTCTGATTAGAG
7580260 GCCTCTGATTAGAG
1 GCCTCTGATTAGAG
7580274 G
1 G
7580275 AGCCATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (14 bp):
GCCTCTGATTAGAG
Found at i:7580272 original size:56 final size:56
Alignment explanation
Indices: 7580204--7580316 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
7580194 AAGTTGTTGA
7580204 GCCTCTAATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTAAGCCTCTGATTAGAG
1 GCCTCTAATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTAAGCCTCTGATTAGAG
* *
7580260 GCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAG
1 GCCTCTAATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTAAGCCTCTGATTAGAG
7580316 G
1 G
7580317 AGCCATTTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (56 bp):
GCCTCTAATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTAAGCCTCTGATTAGAG
Found at i:7580318 original size:139 final size:141
Alignment explanation
Indices: 7580121--7580402 Score: 421
Period size: 139 Copynumber: 2.0 Consensus size: 141
7580111 AAGTCGTTGA
7580121 GCCTCTGATTAGAAGAGCTTTAATTATTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTT
1 GCCTCTGATTAGAAGAGCTTTAATTATTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTT
* *
7580186 ACTTTT-CAAAGTTGTTGAGCCTCTAATTAGAGGAGCCAT-TTATTTTTTC-AAAGTCGTTAAGC
66 ACTTTTCCAAAATCGTTGAGCCTCTAATTAGAGGAGCCATGTTA-TTTTTCAAAAGTCGTTAAGC
7580248 CTCTGATTAGAG
130 CTCTGATTAGAG
*
7580260 GCCTCTGATTAGAGGAGCCATTT-ATT-TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCAT
1 GCCTCTGATTAGAAGAG-C-TTTAATTATTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCAT
* * * *
7580323 TTATTTTTCCAAAATCGTTGAGCCTCTGATTAGAGGAGCCTTGGTTATTTTTCAAAAGTCGTTGA
64 TTACTTTTCCAAAATCGTTGAGCCTCTAATTAGAGGAGCCAT-GTTATTTTTCAAAAGTCGTTAA
*
7580388 GCCTTTGATTAGAG
128 GCCTCTGATTAGAG
7580402 G
1 G
7580403 AGCTTTGTTT
Statistics
Matches: 129, Mismatches: 8, Indels: 9
0.88 0.05 0.06
Matches are distributed among these distances:
139 60 0.47
140 33 0.26
141 9 0.07
142 27 0.21
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (141 bp):
GCCTCTGATTAGAAGAGCTTTAATTATTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTT
ACTTTTCCAAAATCGTTGAGCCTCTAATTAGAGGAGCCATGTTATTTTTCAAAAGTCGTTAAGCC
TCTGATTAGAG
Found at i:7580319 original size:42 final size:42
Alignment explanation
Indices: 7580260--7580450 Score: 231
Period size: 42 Copynumber: 4.4 Consensus size: 42
7580250 CTGATTAGAG
7580260 GCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTGA
* *
7580302 GCCTCTGATTAGAGGAGCCATTTATTTTTCCAAAATCGTTGA
1 GCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTGA
*
7580344 GCCTCTGATTAGAGGAGCCTTGGTTA-TTTTTCAAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCCAT--TTATTTTTTC-AAAGTCGTTGA
* ** * **
7580388 GCCTTTGATTAGAGGAGCTTTGTTTATGTTTCTCAAAGTTATTGA
1 GCCTCTGATTAGAGGAGC--CATTTAT-TTTTTCAAAGTCGTTGA
*
7580433 GCCTCTGCTTAGAGGAGC
1 GCCTCTGATTAGAGGAGC
7580451 TTTGATCAAA
Statistics
Matches: 129, Mismatches: 13, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
42 60 0.47
43 5 0.04
44 33 0.26
45 25 0.19
46 6 0.05
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (42 bp):
GCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTGA
Found at i:7580341 original size:98 final size:97
Alignment explanation
Indices: 7580163--7580358 Score: 329
Period size: 98 Copynumber: 2.0 Consensus size: 97
7580153 AAGTCGTTGA
*
7580163 GCCTCTGATTAGAGGAGCCATTTACTTTTCAAAGTTGTTGAGCCTCTAATTAGAGGAGCCATTTA
1 GCCTCTGATTAGAGGAGCCATTTACTTTTCAAAGTCGTTGAGCCTCTAATTAGAGGAGCCATTTA
* *
7580228 TTTTTTCAAAGTCGTTAAGCCTCTGATTAGAG
66 TTTTTCCAAAATCGTTAAGCCTCTGATTAGAG
* *
7580260 GCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTT
1 GCCTCTGATTAGAGGAGCCATTTA-CTTTTCAAAGTCGTTGAGCCTCTAATTAGAGGAGCCATTT
*
7580325 ATTTTTCCAAAATCGTTGAGCCTCTGATTAGAG
65 ATTTTTCCAAAATCGTTAAGCCTCTGATTAGAG
7580358 G
1 G
7580359 AGCCTTGGTT
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
97 24 0.26
98 68 0.74
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (97 bp):
GCCTCTGATTAGAGGAGCCATTTACTTTTCAAAGTCGTTGAGCCTCTAATTAGAGGAGCCATTTA
TTTTTCCAAAATCGTTAAGCCTCTGATTAGAG
Found at i:7580403 original size:86 final size:86
Alignment explanation
Indices: 7580260--7580450 Score: 244
Period size: 86 Copynumber: 2.2 Consensus size: 86
7580250 CTGATTAGAG
7580260 GCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC-CATT
1 GCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTCATT
* *
7580324 TATTTTTC-CAAAATCGTTGA
66 TATGTTTCTCAAAATCATTGA
* *
7580344 GCCTCTGATTAGAGGAGCCTTGGTTA-TTTTTCAAAAGTCGTTGAGCCTTTGATTAGAGGAGCTT
1 GCCTCTGATTAGAGGAGCCAT--TTATTTTTTC-AAAGTCGTTGAGCCTCTGATTAGAGGAGC-T
** * *
7580408 TGTTTATGTTTCTCAAAGTTATTGA
62 CATTTATGTTTCTCAAAATCATTGA
*
7580433 GCCTCTGCTTAGAGGAGC
1 GCCTCTGATTAGAGGAGC
7580451 TTTGATCAAA
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
84 20 0.22
85 6 0.07
86 31 0.34
88 9 0.10
89 26 0.28
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (86 bp):
GCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTCATT
TATGTTTCTCAAAATCATTGA
Found at i:7580735 original size:32 final size:32
Alignment explanation
Indices: 7580694--7580768 Score: 91
Period size: 32 Copynumber: 2.3 Consensus size: 32
7580684 TGTGTTTTTG
7580694 TTTTTATTTTCAT-TAATTAATATATTTT-TTAT
1 TTTTTATTTTCATCT-ATTAATAT-TTTTATTAT
*
7580726 TTTTTATTTTTATCTATTAATATTTTTATTAT
1 TTTTTATTTTCATCTATTAATATTTTTATTAT
*
7580758 TTATCTATTTT
1 TT-TTTATTTT
7580769 TTATTTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
31 4 0.11
32 26 0.68
33 8 0.21
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (32 bp):
TTTTTATTTTCATCTATTAATATTTTTATTAT
Found at i:7580752 original size:17 final size:17
Alignment explanation
Indices: 7580732--7580835 Score: 61
Period size: 17 Copynumber: 6.0 Consensus size: 17
7580722 TTATTTTTTA
7580732 TTTTTATCTATTAATA-
1 TTTTTATCTATTAATAT
*
7580748 TTTTTAT-TATTTATCTAT
1 TTTTTATCTA-TTA-ATAT
* * *
7580766 TTTTTATTTTTTATTAT
1 TTTTTATCTATTAATAT
* **
7580783 TATTTATCTATTTCT-T
1 TTTTTATCTATTAATAT
* *
7580799 TTATTTATCTAATTATTTT
1 TT-TTTATCT-ATTAATAT
7580818 TTTGTTATCTATTAATAT
1 TTT-TTATCTATTAATAT
7580836 ATTTATCTTT
Statistics
Matches: 67, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
15 2 0.03
16 12 0.18
17 22 0.33
18 21 0.31
19 10 0.15
ACGTcount: A:0.24, C:0.06, G:0.01, T:0.69
Consensus pattern (17 bp):
TTTTTATCTATTAATAT
Found at i:7580768 original size:47 final size:47
Alignment explanation
Indices: 7580698--7580850 Score: 134
Period size: 47 Copynumber: 3.2 Consensus size: 47
7580688 TTTTTGTTTT
* * * *
7580698 TATTTTCATTAATTAATATATTTTTTATTTTTTATTTTTATCTATTAA
1 TATTTTTATT-ATTTATCTATTTTTTATTTTTTATTATTATCTATTAA
*
7580746 TATTTTTATTATTTATCTATTTTTTATTTTTTATTATTATTTATCT-A
1 TATTTTTATTATTTATCTATTTTTTATTTTTTATTATTATCTAT-TAA
* * * *
7580793 T-TTCTT-TTATTTATCTAATTATTTT-TTTGTTATCTATTAATATATTTA
1 TATTTTTATTATTTATCT-ATT-TTTTATTTTTTAT-TATT-ATCTATTAA
*
7580841 TCTTTTTATT
1 TATTTTTATT
7580851 TTGATTAATT
Statistics
Matches: 88, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
45 10 0.11
46 14 0.16
47 41 0.47
48 17 0.19
49 4 0.05
50 2 0.02
ACGTcount: A:0.25, C:0.05, G:0.01, T:0.69
Consensus pattern (47 bp):
TATTTTTATTATTTATCTATTTTTTATTTTTTATTATTATCTATTAA
Found at i:7580771 original size:18 final size:17
Alignment explanation
Indices: 7580718--7580795 Score: 65
Period size: 18 Copynumber: 4.6 Consensus size: 17
7580708 AATTAATATA
*
7580718 TTTT-TTATTTTTTA-T
1 TTTTATTATTTATTATT
*
7580733 TTTTATCTA-TTAATA-T
1 TTTTAT-TATTTATTATT
7580749 TTTTATTATTTATCTATT
1 TTTTATTATTTAT-TATT
*
7580767 TTTTATTTTTTATTATT
1 TTTTATTATTTATTATT
*
7580784 ATTTATCTATTT
1 TTTTAT-TATTT
7580796 CTTTTATTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
15 6 0.12
16 15 0.29
17 13 0.25
18 17 0.33
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTATTATTTATTATT
Found at i:7580773 original size:40 final size:40
Alignment explanation
Indices: 7580723--7580841 Score: 118
Period size: 45 Copynumber: 2.8 Consensus size: 40
7580713 ATATATTTTT
7580723 TATTTTTTATTTTTATCTATTAATATTTTTATTATTTATC
1 TATTTTTTATTTTTATCTATTAATATTTTTATTATTTATC
7580763 TATTTTTTATTTTTTAT-TATTATTTATCTATTTCTT-TTATTTATC
1 TATTTTTTA-TTTTTATCTATTA---A--TATTT-TTATTATTTATC
*
7580808 TAATTATTTT-TTTGTTATCTATTAATATATTTAT
1 T-ATT-TTTTATTT-TTATCTATTAATATTTTTAT
7580842 CTTTTTATTT
Statistics
Matches: 66, Mismatches: 1, Indels: 22
0.74 0.01 0.25
Matches are distributed among these distances:
40 14 0.21
41 9 0.14
42 5 0.08
43 1 0.02
44 1 0.02
45 18 0.27
46 9 0.14
47 9 0.14
ACGTcount: A:0.24, C:0.05, G:0.01, T:0.70
Consensus pattern (40 bp):
TATTTTTTATTTTTATCTATTAATATTTTTATTATTTATC
Found at i:7580789 original size:7 final size:7
Alignment explanation
Indices: 7580716--7580795 Score: 60
Period size: 7 Copynumber: 11.7 Consensus size: 7
7580706 TTAATTAATA
*
7580716 TATTTTT
1 TATTTAT
*
7580723 TATTTTT
1 TATTTAT
7580730 TATTT-T
1 TATTTAT
*
7580736 TATCTAT
1 TATTTAT
*
7580743 TA-ATAT
1 TATTTAT
7580749 T-TTTAT
1 TATTTAT
7580755 TATTTAT
1 TATTTAT
*
7580762 CTATTTTT
1 -TATTTAT
*
7580770 TATTTTT
1 TATTTAT
7580777 TA-TTAT
1 TATTTAT
7580783 TATTTAT
1 TATTTAT
7580790 CTATTT
1 -TATTT
7580796 CTTTTATTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
6 18 0.29
7 33 0.53
8 11 0.18
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (7 bp):
TATTTAT
Found at i:7581231 original size:6 final size:6
Alignment explanation
Indices: 7581220--7581308 Score: 67
Period size: 6 Copynumber: 14.5 Consensus size: 6
7581210 TTTAATATTC
* * *
7581220 TTTTAT TTTTAT CTTTA- TTTTAC TTTTAT TTTTAT TTTACTTT TCTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT--TAT T-TTTAT
* *
7581270 TTTTAT TTTCAC TTTTA- TTTTA- TTTTATT ATTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T -TTTTAT TTT
7581309 CTTTAAATAA
Statistics
Matches: 68, Mismatches: 8, Indels: 14
0.76 0.09 0.16
Matches are distributed among these distances:
5 14 0.21
6 40 0.59
7 4 0.06
8 8 0.12
9 2 0.03
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:7581240 original size:17 final size:17
Alignment explanation
Indices: 7581220--7581308 Score: 78
Period size: 17 Copynumber: 5.2 Consensus size: 17
7581210 TTTAATATTC
7581220 TTTTATTTTTATCTTTA
1 TTTTATTTTTATCTTTA
* *
7581237 TTTTACTTTTATTTTTA
1 TTTTATTTTTATCTTTA
*
7581254 TTTTA-CTTT-TCTTTA
1 TTTTATTTTTATCTTTA
*
7581269 TTTTTATTTTCA-CTTTTA
1 -TTTTATTTTTATC-TTTA
7581287 TTTTATTTTATTAT-TTTA
1 TTTTA-TTT-TTATCTTTA
7581305 TTTT
1 TTTT
7581309 CTTTAAATAA
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
15 5 0.09
16 8 0.14
17 28 0.48
18 15 0.26
19 2 0.03
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTTTATCTTTA
Found at i:7581241 original size:5 final size:5
Alignment explanation
Indices: 7581220--7581308 Score: 76
Period size: 5 Copynumber: 16.8 Consensus size: 5
7581210 TTTAATATTC
*
7581220 TTTTA TTTTTA TCTTTA TTTTA CTTTTA TTTTTA TTTTA CTTTT- CTTTA
1 TTTTA -TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA
7581269 TTTTTA TTTTCA CTTTTA TTTTA TTTTA --TTA TTTTA TTTT
1 -TTTTA TTTT-A -TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
7581309 CTTTAAATAA
Statistics
Matches: 71, Mismatches: 3, Indels: 19
0.76 0.03 0.20
Matches are distributed among these distances:
3 3 0.04
4 3 0.04
5 31 0.44
6 30 0.42
7 4 0.06
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:7581367 original size:57 final size:55
Alignment explanation
Indices: 7581305--7581480 Score: 160
Period size: 57 Copynumber: 3.1 Consensus size: 55
7581295 TATTATTTTA
* *
7581305 TTTTCTTTAAATAAAATAAAAAATATATATTTTTGGGAAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAATAAAATAAAAAA-A-ATATTTTTGGAAAAAAGTTGAAAGTATCAAT
* * *
7581362 TTTTCTTAAAAATAAATTTTCAAAAAAA-GTTTTT-GAAGAAAAGTTGAAAGTATCAAT
1 TTTTCTT-AAAATAAA--ATAAAAAAAATATTTTTGGAA-AAAAGTTGAAAGTATCAAT
* * * **
7581419 TTTCCTCGAAATTAAAATTTTTAAAAAATA-TTTTGGAAAAAAGTTGAAAGTATCAAT
1 TTTTCT-TAAAATAAAA--TAAAAAAAATATTTTTGGAAAAAAGTTGAAAGTATCAAT
7581476 TTTTC
1 TTTTC
7581481 CTGCACAAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
56 2 0.02
57 77 0.79
58 11 0.11
59 1 0.01
60 6 0.06
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (55 bp):
TTTTCTTAAAATAAAATAAAAAAAATATTTTTGGAAAAAAGTTGAAAGTATCAAT
Found at i:7582282 original size:26 final size:24
Alignment explanation
Indices: 7582241--7582292 Score: 77
Period size: 26 Copynumber: 2.1 Consensus size: 24
7582231 GTATGAATTT
7582241 TTGGAGAAAGAAAGAGAGAATAAG
1 TTGGAGAAAGAAAGAGAGAATAAG
*
7582265 TTGGAGAGAGAGAGAGAGAGAATAAG
1 TTGGAGA-A-AGAAAGAGAGAATAAG
7582291 TT
1 TT
7582293 AAGGATGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.28
25 1 0.04
26 17 0.68
ACGTcount: A:0.48, C:0.00, G:0.37, T:0.15
Consensus pattern (24 bp):
TTGGAGAAAGAAAGAGAGAATAAG
Found at i:7582854 original size:321 final size:321
Alignment explanation
Indices: 7582268--7582902 Score: 1234
Period size: 321 Copynumber: 2.0 Consensus size: 321
7582258 GAATAAGTTG
7582268 GAGAGAGAGAGAGAGAGAATAAGTTAAGGATGAAGTCTGGTTGTGATAAAACTTGTAATGGTGAT
1 GAGAGAGAGAGAGAGAGAATAAGTTAAGGATGAAGTCTGGTTGTGATAAAACTTGTAATGGTGAT
7582333 GGTAATGTGAAGGCTCTGATGATTTAAAGGTTGCTGTTTGTAAATTGGTTGGATTTAAAGAGAAA
66 GGTAATGTGAAGGCTCTGATGATTTAAAGGTTGCTGTTTGTAAATTGGTTGGATTTAAAGAGAAA
7582398 ATTATTTTGATTTTAGACAGAGAGAATGAATTTTTAGAAAGAATGTGTGAATTCAGATGAAGAAA
131 ATTATTTTGATTTTAGACAGAGAGAATGAATTTTTAGAAAGAATGTGTGAATTCAGATGAAGAAA
7582463 AAAGAATAAAAAAAGTAAAAAGTAACGATTTTGGTAAAAAATAATAAATTAAATTATAAGGTAAT
196 AAAGAATAAAAAAAGTAAAAAGTAACGATTTTGGTAAAAAATAATAAATTAAATTATAAGGTAAT
7582528 TAAGTGTAACATTTTAAATCTCAAGAGACACTTTCATTTTGGCTTTAACCACAGTTGGAGA
261 TAAGTGTAACATTTTAAATCTCAAGAGACACTTTCATTTTGGCTTTAACCACAGTTGGAGA
7582589 GAGAGAGAGAGAGAGAGAATAAGTTAAGGATGAAGTCTGGTTGTGATAAAACTTGTAATGGTGAT
1 GAGAGAGAGAGAGAGAGAATAAGTTAAGGATGAAGTCTGGTTGTGATAAAACTTGTAATGGTGAT
*
7582654 GGTAGTGTGAAGGCTCTGATGATTTAAAGGTTGCTGTTTGTAAATTGGTTGGATTTAAAGAGAAA
66 GGTAATGTGAAGGCTCTGATGATTTAAAGGTTGCTGTTTGTAAATTGGTTGGATTTAAAGAGAAA
*
7582719 ATTATTTTGATTTTAGACAGAGAGAATGAATTTTTAGAGAGAATGTGTGAATTCAGATGAAGAAA
131 ATTATTTTGATTTTAGACAGAGAGAATGAATTTTTAGAAAGAATGTGTGAATTCAGATGAAGAAA
*
7582784 AAAGAATAAAAAAAGTAAAAAGTAACGATTTTGGTAAAAAATAATAAATTAAATTATAAGGTAGT
196 AAAGAATAAAAAAAGTAAAAAGTAACGATTTTGGTAAAAAATAATAAATTAAATTATAAGGTAAT
*
7582849 TAAGTGTAACATTTTAAATCTCAAGGGACACTTTCATTTTGGCTTTAACCACAG
261 TAAGTGTAACATTTTAAATCTCAAGAGACACTTTCATTTTGGCTTTAACCACAG
7582903 GTATGTTTCT
Statistics
Matches: 310, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
321 310 1.00
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (321 bp):
GAGAGAGAGAGAGAGAGAATAAGTTAAGGATGAAGTCTGGTTGTGATAAAACTTGTAATGGTGAT
GGTAATGTGAAGGCTCTGATGATTTAAAGGTTGCTGTTTGTAAATTGGTTGGATTTAAAGAGAAA
ATTATTTTGATTTTAGACAGAGAGAATGAATTTTTAGAAAGAATGTGTGAATTCAGATGAAGAAA
AAAGAATAAAAAAAGTAAAAAGTAACGATTTTGGTAAAAAATAATAAATTAAATTATAAGGTAAT
TAAGTGTAACATTTTAAATCTCAAGAGACACTTTCATTTTGGCTTTAACCACAGTTGGAGA
Found at i:7587688 original size:238 final size:236
Alignment explanation
Indices: 7587229--7587704 Score: 774
Period size: 238 Copynumber: 2.0 Consensus size: 236
7587219 ACATGCAATG
* *
7587229 AAAGTCTCGCAATAATATTCTTTATCTTTCCTCACATGTTAAACAAAATCAGCTCTCAAAATACG
1 AAAGTCTCACAATAATATTCTCTATCTTTCCTCACATGTTAAACAAAATCAGCTCTCAAAATACG
* * *
7587294 AACTCAAACTCTTCCTTGAATTGTGCTCCTTTAAGCTTGACTCTTCTTATATCTTGAACCTCTAC
66 AACTCAAACTCTTCCTTCAATTGTGCTCCTTTAAGCTTGACTCTTCTTATATCATGAACATCTAC
*
7587359 TCTAATACCAGTTGTTAGTATTCTATCTACAGCTGCTTCTAATATGACATTGATACCAGTTGTTA
131 TCTAATACCAGTTGTTAATATTCTATCTACAGCTGCTTCTAATATGACATTGATACCAGTTGTTA
*
7587424 GTCAGCACATTCACATCTATTTTGAACGTAACTCTAACACC
196 GTCAGCACATTCACATCTATTTTGAACATAACTCTAACACC
* * * *
7587465 AAAGTCTCACAATAATATTCTCTAGTCTTTCTTCACATTTTACACAAAATCAGCTTTCAAAATAC
1 AAAGTCTCACAATAATATTCTCTA-TCTTTCCTCACATGTTAAACAAAATCAGCTCTCAAAATAC
*
7587530 GAACTCAAACTCTCTCCTTCAATTGTGCTCTTTTAAGCTTGACTCTTCTTATATCATGAACATCT
65 GAACTCAAACTCT-TCCTTCAATTGTGCTCCTTTAAGCTTGACTCTTCTTATATCATGAACATCT
* *
7587595 GCTCTAATACCAGTTGTTAATA-TCTTATCTACAGCTGCTTCTAATATGACTTTGATACCAGTTG
129 ACTCTAATACCAGTTGTTAATATTC-TATCTACAGCTGCTTCTAATATGACATTGATACCAGTTG
* *
7587659 TTAGTCAGCACATTCACATCTATTTTGAACATGACTTTAACACC
193 TTAGTCAGCACATTCACATCTATTTTGAACATAACTCTAACACC
7587703 AA
1 AA
7587705 TTGTTAGGCA
Statistics
Matches: 221, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
236 22 0.10
237 51 0.23
238 148 0.67
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.37
Consensus pattern (236 bp):
AAAGTCTCACAATAATATTCTCTATCTTTCCTCACATGTTAAACAAAATCAGCTCTCAAAATACG
AACTCAAACTCTTCCTTCAATTGTGCTCCTTTAAGCTTGACTCTTCTTATATCATGAACATCTAC
TCTAATACCAGTTGTTAATATTCTATCTACAGCTGCTTCTAATATGACATTGATACCAGTTGTTA
GTCAGCACATTCACATCTATTTTGAACATAACTCTAACACC
Found at i:7594291 original size:23 final size:23
Alignment explanation
Indices: 7594264--7594334 Score: 76
Period size: 23 Copynumber: 3.0 Consensus size: 23
7594254 ATCACATTGT
7594264 TAAAAAATTTTATTTATTTATTA
1 TAAAAAATTTTATTTATTTATTA
*
7594287 TAAAATAA-TTAATTTATTTATTA
1 TAAAA-AATTTTATTTATTTATTA
7594310 -AAATAAATATTTA-TTATTTGATTA
1 TAAA-AAAT-TTTATTTATTT-ATTA
7594334 T
1 T
7594335 TACATATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
22 5 0.12
23 26 0.65
24 9 0.22
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (23 bp):
TAAAAAATTTTATTTATTTATTA
Found at i:7595173 original size:15 final size:16
Alignment explanation
Indices: 7595153--7595182 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7595143 TGATTATTCG
7595153 AATAATTATT-TTTTA
1 AATAATTATTATTTTA
7595168 AATAATTATTATTTT
1 AATAATTATTATTTT
7595183 TTATTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
AATAATTATTATTTTA
Found at i:7595332 original size:18 final size:18
Alignment explanation
Indices: 7595309--7595357 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
7595299 TTTCAAATAA
7595309 ATTTAAATAATTATAATT-
1 ATTTAAATAATTAT-ATTC
7595327 ATTTAAATAA--ATATTC
1 ATTTAAATAATTATATTC
7595343 ATTTCAAATAATTAT
1 ATTT-AAATAATTAT
7595358 GATTTTTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 3 0.11
16 6 0.22
17 6 0.22
18 10 0.37
19 2 0.07
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTTAAATAATTATATTC
Found at i:7595423 original size:181 final size:181
Alignment explanation
Indices: 7595140--7596364 Score: 943
Period size: 181 Copynumber: 6.8 Consensus size: 181
7595130 ATCCAAAAAA
* * * * * *
7595140 TTATGATTATTCGAATAATTATT-T-TTT-AAATAATTATTATTTTTTATTTTATTATAAAATAA
1 TTATAATTATTTGAATAATTATTCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAA
* * * * *
7595202 CTATTTATATTCATATAAATTTATTTAAAATAAAATAATATTAATTTATTAATATTTTAAAAATT
66 TTATTTTTATTCATACAAATTTACTTGAAATAAAATAATATTAATTTATTAATATTTTAAAAATT
* * * * * *
7595267 AATAAGTAATATATTTACAAGATATATTTGTTTTTCAAATAAATTTAAATAA
131 AATAAGTAAAATATTTAAAAGATA-ATTTATTTTTCAAACAAATTCAAATAG
* * * * * *
7595319 TTATAATTATTTAAATAAATATTC-ATTTCAAATAATTATGATTTTTTGTATTATTATAAAATAG
1 TTATAATTATTTGAATAATTATTCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAA
* * *
7595383 TTATTTTTATTCATACAAATTTACTTGAAATTAAATAATATTAA--TAATCATATTTTAAAAATT
66 TTATTTTTATTCATACAAATTTACTTGAAATAAAATAATATTAATTTATTAATATTTTAAAAATT
* * ** * *
7595446 AATAAGTAAAAAATTTAAAA-ACTAAATTCA-TTTAAAAAGTAAATTCAAACAG
131 AATAAGTAAAATATTTAAAAGA-T-AATTTATTTTTCAAA-CAAATTCAAATAG
* * * * * *
7595498 TTATGATTATTTGAATAGTTA-TATATTTCAAATAATTGTGACTTTTGGTTTCATCAT-AAATAA
1 TTATAATTATTTGAATAATTATTCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAA
* * * * * * * *
7595561 TTATATCTGTTTATACAAGCTTAATTTG-AATAAAATAATATTAATTTATTAATATTTTCAAAGA
66 TTATTTTTATTCATACAA-ATTTACTTGAAATAAAATAATATTAATTTATTAATATTTT-AAAAA
* *
7595625 --AATAAGTAAAAGATTTAAAA-ATAAATTTATTTATT-GAACAAATTCAAATAG
129 TTAATAAGTAAAATATTTAAAAGAT-AATTTATTT-TTCAAACAAATTCAAATAG
* *
7595676 TTATGATTATTTGAATAATTA-TCTATTTCAAAATAA-TATGA-TATTTTGTTTTATAATAAAAT
1 TTATAATTATTTGAATAATTATTCTATTTC-AAATAATTATGACT-TTTTGTTTTATCATAAAAT
** ** * * *
7595738 AATTATTTTTGCTCATACAACCTTA-TTCATAATAAAATAATATTAATTTGTTAATATTTT-GAA
64 AATTATTTTTATTCATACAAATTTACTTGA-AATAAAATAATATTAATTTATTAATATTTTAAAA
* * * ** * * * *
7595801 ATTAACAAATAAAATATTTAAAACATATATTTATTTACCGAATAAGTACAAATAG
128 ATTAATAAGTAAAATATTTAAAAGATA-ATTTATTTTTCAAACAAATTCAAATAG
* * * * * * *
7595856 TTAAAAATATTTG-ATCAATTA-TCTATTTGAAATAATTATTACATTTTATTTTATCATAAAATT
1 TTATAATTATTTGAAT-AATTATTCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATA
* * * * * * * *
7595919 ATTGTTTCTCTTTATACAAGTTTATTTGTAATAAAAT-ATATTAATTTATTAATATTACT-AAAA
65 ATTATTTTTATTCATACAAATTTACTTGAAATAAAATAATATTAATTTATTAATATT-TTAAAAA
* * * * * * *
7595982 TTAATAAGCT-AAAGATTTAAAAGATAAATCTATTTAAT-GAACAAATTTAAAAAAA
129 TTAATAAG-TAAAATATTTAAAAGAT-AATTTATTT-TTCAAACAAA-TTCAAATAG
* * * *
7596037 TTATAAATAGTTGAATAATTA-TCTATTTCAAATAATTATGAGTTTTTGTTTTATCATAAAACAA
1 TTATAATTATTTGAATAATTATTCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAA
* * ** * * *
7596101 TTATTATTATTCATAC-AATATTACTCGGTATAAAA-AATGTTAATTTATTAATAATTTAAAATT
66 TTATTTTTATTCATACAAAT-TTACTTGAAATAAAATAATATTAATTTATTAATATTTTAAAAAT
* * * * *
7596164 TAATAAGTATAATATTTAAAAGATAA-CTACGTTTACTAAACAAATTCAAATAC
130 TAATAAGTAAAATATTTAAAAGATAATTTA-TTTTTC-AAACAAATTCAAATAG
* * * * * *
7596217 TTATGATCATTTAAATAATTATT-TATTTCAAATAATTATAACTTTTTGTTTTGTCGTAAAATAA
1 TTATAATTATTTGAATAATTATTCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAA
* * * * * * *
7596281 TT-GTTTTAGTTTATACAAACTTATAC-AG-TATAAAATAATATTAATTTGTTAATAATTCAAAA
66 TTATTTTTA-TTCATACAAA-TT-TACTTGAAATAAAATAATATTAATTTATTAATATTTTAAAA
7596343 ATTAATAAGTAAAATATTTAAA
128 ATTAATAAGTAAAATATTTAAA
7596365 CATTAAATCA
Statistics
Matches: 837, Mismatches: 163, Indels: 90
0.77 0.15 0.08
Matches are distributed among these distances:
177 5 0.01
178 105 0.13
179 247 0.30
180 222 0.27
181 252 0.30
182 6 0.01
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.44
Consensus pattern (181 bp):
TTATAATTATTTGAATAATTATTCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAA
TTATTTTTATTCATACAAATTTACTTGAAATAAAATAATATTAATTTATTAATATTTTAAAAATT
AATAAGTAAAATATTTAAAAGATAATTTATTTTTCAAACAAATTCAAATAG
Found at i:7595480 original size:17 final size:17
Alignment explanation
Indices: 7595458--7595492 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
7595448 TAAGTAAAAA
7595458 ATTTAAAAACTAAATTC
1 ATTTAAAAACTAAATTC
*
7595475 ATTTAAAAAGTAAATTC
1 ATTTAAAAACTAAATTC
7595492 A
1 A
7595493 AACAGTTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (17 bp):
ATTTAAAAACTAAATTC
Found at i:7596252 original size:361 final size:353
Alignment explanation
Indices: 7595121--7596364 Score: 1109
Period size: 361 Copynumber: 3.5 Consensus size: 353
7595111 CAAATAAATT
* * * * *
7595121 CAAATATAAATCCAAAAAATTATGATTATTCGAATAATTATTT-TTT-AAATAATTATTATTTTT
1 CAAA-ATAAATTCAAATAGTTATGA-TATT-TAATAATTATTTATTTCAAATAATTATTACTTTT
* * * * * * **
7595184 TATTTTATTATAAAATAACTATTTATATTCATATAAATTTATTTAAAATAAAATAATATTAATTT
63 TATTTTATCATAAAATAATTATTTCTGTTTATACAAATTTATTTGTAATAAAATAATATTAATTT
* * * * * * * *
7595249 ATTAATATTTTAAAAATTAATAAGTAATATATTTACAAGATATATTTGTTT-TTCAAATAAATTT
128 ATTAATATTCT-AAAATTAATAAGTAAAAGATTTAAAAGATAAATTTATTTATT-GAACAAATTT
* * * *
7595313 AAATAATTATAATTATTTAAATAAATAT-TCATTTCAAATAATTATGATTTTTTGTATTATTATA
191 AAATAATTATAATTATTTGAATAATTATCT-ATTTCAAATAATTATGA-TTTTTGTTTTATAATA
* * * * * *
7595377 AAATAGTTATTTTTATTCATACAAATTTACTTGAAATTAAATAATATTAA--TAATCATATTTTA
254 AAATAATTATTTTTATTCATACAAA-TTACTCGATA-TAAAAAATATTAATTTATTAATATTTT-
* *
7595440 AAAATTAATAAGTAAAAAATTTAAAAACTAAATTCATTTA
316 AAAATTAATAAGTAAAATATTTAAAAA-TAAATAC-TTTA
* * * * *
7595480 -AAAAGTAAATTCAAACAGTTATGATTATTTGAATAGTTATATATTTCAAATAATTGTGACTTTT
1 CAAAA-TAAATTCAAATAGTTATGA-TATTT-AATAATTATTTATTTCAAATAATTATTACTTTT
** * * * *
7595544 GGTTTCATCAT-AAATAATTATATCTGTTTATACAAGCTTAATTTG-AATAAAATAATATTAATT
63 TATTTTATCATAAAATAATTATTTCTGTTTATACAA-ATTTATTTGTAATAAAATAATATTAATT
* * ** *
7595607 TATTAATATTTTCAAAGAAATAAGTAAAAGATTTAAAA-ATAAATTTATTTATTGAACAAATTCA
127 TATTAATATTCTAAAATTAATAAGTAAAAGATTTAAAAGATAAATTTATTTATTGAACAAATTTA
* *
7595671 AATAGTTATGATTATTTGAATAATTATCTATTTCAAAATAA-TATGATATTTTGTTTTATAATAA
192 AATAATTATAATTATTTGAATAATTATCTATTTC-AAATAATTATGAT-TTTTGTTTTATAATAA
** * * * *
7595735 AATAATTATTTTTGCTCATACAACCTTATTC-ATAATAAAATAATATTAATTTGTTAATATTTTG
255 AATAATTATTTTTATTCATACAA-ATTACTCGAT-ATAAAA-AATATTAATTTATTAATATTTTA
* * *
7595799 AAATTAACAAATAAAATATTTAAAACATATATTTA-TTTA
317 AAATTAATAAGTAAAATATTTAAAA-ATA-A-ATACTTTA
** * * ** * * * *
7595838 CCGAATAAGTACAAATAGTTAAAAATATTTGATCAATTATCTATTTGAAATAATTATTACATTTT
1 CAAAATAAATTCAAATAGTT-ATGATATTTAAT-AATTATTTATTTCAAATAATTATTACTTTTT
* * * *
7595903 ATTTTATCATAAAATTATTGTTTCTCTTTATACAAGTTTATTTGTAATAAAAT-ATATTAATTTA
64 ATTTTATCATAAAATAATTATTTCTGTTTATACAAATTTATTTGTAATAAAATAATATTAATTTA
* *
7595967 TTAATATTACTAAAATTAATAAGCT-AAAGATTTAAAAGATAAATCTATTTAATGAACAAATTTA
129 TTAATATT-CTAAAATTAATAAG-TAAAAGATTTAAAAGATAAATTTATTTATTGAACAAATTT-
* * * *
7596031 AAAAAATTATAAATAGTTGAATAATTATCTATTTCAAATAATTATGAGTTTTTGTTTTATCATAA
191 AAATAATTATAATTATTTGAATAATTATCTATTTCAAATAATTATGA-TTTTTGTTTTATAATAA
* * * * *
7596096 AACAATTATTATTATTCATACAATATTACTCGGTATAAAAAATGTTAATTTATTAATAATTTAAA
255 AATAATTATTTTTATTCATACAA-ATTACTCGATATAAAAAATATTAATTTATTAATATTTTAAA
* *
7596161 ATTTAATAAGTATAATATTTAAAAGATAACTACGTTTA
319 A-TTAATAAGTAAAATATTTAAAA-ATAAATAC-TTTA
* * * *
7596199 CTAAACAAATTCAAATACTTATGATCATTTAAATAATTATTTATTTCAAATAATTATAACTTTTT
1 CAAAATAAATTCAAATAGTTATGAT-ATTT-AATAATTATTTATTTCAAATAATTATTACTTTTT
* * * * * **
7596264 GTTTTGTCGTAAAATAATTGTTT-TAGTTTATACAAACTTATACAGT-ATAAAATAATATTAATT
64 ATTTTATCATAAAATAATTATTTCT-GTTTATACAAATTTAT-TTGTAATAAAATAATATTAATT
* * *
7596327 TGTTAATAATTCAAAAATTAATAAGTAAAATATTTAAA
127 TATTAAT-ATTCTAAAATTAATAAGTAAAAGATTTAAA
7596365 CATTAAATCA
Statistics
Matches: 712, Mismatches: 134, Indels: 75
0.77 0.15 0.08
Matches are distributed among these distances:
356 6 0.01
357 101 0.14
358 165 0.23
359 118 0.17
360 84 0.12
361 191 0.27
362 44 0.06
363 3 0.00
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.44
Consensus pattern (353 bp):
CAAAATAAATTCAAATAGTTATGATATTTAATAATTATTTATTTCAAATAATTATTACTTTTTAT
TTTATCATAAAATAATTATTTCTGTTTATACAAATTTATTTGTAATAAAATAATATTAATTTATT
AATATTCTAAAATTAATAAGTAAAAGATTTAAAAGATAAATTTATTTATTGAACAAATTTAAATA
ATTATAATTATTTGAATAATTATCTATTTCAAATAATTATGATTTTTGTTTTATAATAAAATAAT
TATTTTTATTCATACAAATTACTCGATATAAAAAATATTAATTTATTAATATTTTAAAATTAATA
AGTAAAATATTTAAAAATAAATACTTTA
Found at i:7596314 original size:180 final size:178
Alignment explanation
Indices: 7595140--7596364 Score: 886
Period size: 179 Copynumber: 6.8 Consensus size: 178
7595130 ATCCAAAAAA
* * * * * * * *
7595140 TTATGATTATTCGAATAATTAT-T-TTTTAAATAATTATTATTTTTTATTTTATTATAAAATAAC
1 TTATAATTATTTGAATAATTATCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAAT
* * * **
7595203 TATTTATA-TTCATATAAATTTAT-TTAAAATAAAATAATATTAATTTATTAATATTTTAAAAAT
66 TATTT-TAGTTCATACAAACTTATACT-GTATAAAATAATATTAATTTATTAATATTTT-AAAAT
* * * * ** * * *
7595266 TAATAAGTAATATATTTACAAGATATATTTGTTTTTCAAATAAATTTAAATAA
128 TAATAAGTAAAATATTTAAAAGATAAATAT-TTACT-AAACAAATTCAAATAG
* * * * * *
7595319 TTATAATTATTTAAATAAATAT-TCATTTCAAATAATTATGATTTTTTGTATTATTATAAAATAG
1 TTATAATTATTTGAATAATTATCT-ATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAA
* * * *
7595383 TTATTTTTA-TTCATACAAA-TT-TACTTGAAATTAAATAATATTAA--TAATCATATTTTAAAA
65 TTA-TTTTAGTTCATACAAACTTATAC-TG-TATAAAATAATATTAATTTATTAATATTTT-AAA
* * * *
7595443 ATTAATAAGTAAAAAATTTAAAA-ACTAAATTCATTTA-AAAAGTAAATTCAAACAG
126 ATTAATAAGTAAAATATTTAAAAGA-TAAA-T-ATTTACTAAA-CAAATTCAAATAG
* * * * * *
7595498 TTATGATTATTTGAATAGTTATATATTTCAAATAATTGTGACTTTTGGTTTCATCAT-AAATAAT
1 TTATAATTATTTGAATAATTATCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAAT
* * * * * * **
7595562 TATATCT-GTTTATACAAGCTTA-ATTTGAATAAAATAATATTAATTTATTAATATTTTCAAAGA
66 TAT-TTTAGTTCATACAAACTTATA-CTGTATAAAATAATATTAATTTATTAATATTTTAAAATT
* * *
7595625 AATAAGTAAAAGATTTAAAA-ATAAATTTATTTATTGAACAAATTCAAATAG
129 AATAAGTAAAATATTTAAAAGATAAA--TATTTACTAAACAAATTCAAATAG
* *
7595676 TTATGATTATTTGAATAATTATCTATTTCAAAATAA-TATGA-TATTTTGTTTTATAATAAAATA
1 TTATAATTATTTGAATAATTATCTATTTC-AAATAATTATGACT-TTTTGTTTTATCATAAAATA
* * * * * * *
7595739 ATTATTTTTGCTCATACAACCTTATTCAT-AATAAAATAATATTAATTTGTTAATATTTTGAAAT
64 ATTATTTTAGTTCATACAAACTTATAC-TGTATAAAATAATATTAATTTATTAATATTTTAAAAT
* * * * ** * * *
7595803 TAACAAATAAAATATTTAAAACATATATTTATTTACCGAATAAGTACAAATAG
128 TAATAAGTAAAATATTTAAAAGATA-A-ATATTTACTAAACAAATTCAAATAG
* * * * * * *
7595856 TTAAAAATATTTG-ATCAATTATCTATTTGAAATAATTATTACATTTTATTTTATCATAAAATTA
1 TTATAATTATTTGAAT-AATTATCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAA
* * * ** * *
7595920 TTGTTTCT-CTTTATACAAGTTTAT-TTGTAATAAAAT-ATATTAATTTATTAATATTACTAAAA
65 TTATTT-TAGTTCATACAAACTTATACTGT-ATAAAATAATATTAATTTATTAATATT-TTAAAA
* * * * * *
7595982 TTAATAAGCT-AAAGATTTAAAAGATAAATCTATTTAATGAACAAATTTAAAAAAA
127 TTAATAAG-TAAAATATTTAAAAGATAAA--TATTTACTAAACAAA-TTCAAATAG
* * * *
7596037 TTATAAATAGTTGAATAATTATCTATTTCAAATAATTATGAGTTTTTGTTTTATCATAAAACAAT
1 TTATAATTATTTGAATAATTATCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAAT
* * *
7596102 TATTATTA-TTCATACAATA-TTACT-CGGTATAAAA-AATGTTAATTTATTAATAATTTAAAAT
66 TATT-TTAGTTCATACAA-ACTTA-TACTGTATAAAATAATATTAATTTATTAATATTTTAAAA-
* * *
7596163 TTAATAAGTATAATATTTAAAAGATAACTACGTTTACTAAACAAATTCAAATAC
127 TTAATAAGTAAAATATTTAAAAGATAAATA--TTTACTAAACAAATTCAAATAG
* * * * * * *
7596217 TTATGATCATTTAAATAATTATTTATTTCAAATAATTATAACTTTTTGTTTTGTCGTAAAATAAT
1 TTATAATTATTTGAATAATTATCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAAT
* * * * **
7596282 TGTTTTAGTTTATACAAACTTATACAGTATAAAATAATATTAATTTGTTAATAATTCAAAAATTA
66 TATTTTAGTTCATACAAACTTATACTGTATAAAATAATATTAATTTATTAAT-ATTTTAAAATTA
7596347 ATAAGTAAAATATTTAAA
130 ATAAGTAAAATATTTAAA
7596365 CATTAAATCA
Statistics
Matches: 836, Mismatches: 155, Indels: 108
0.76 0.14 0.10
Matches are distributed among these distances:
177 2 0.00
178 102 0.12
179 255 0.31
180 230 0.28
181 232 0.28
182 15 0.02
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.44
Consensus pattern (178 bp):
TTATAATTATTTGAATAATTATCTATTTCAAATAATTATGACTTTTTGTTTTATCATAAAATAAT
TATTTTAGTTCATACAAACTTATACTGTATAAAATAATATTAATTTATTAATATTTTAAAATTAA
TAAGTAAAATATTTAAAAGATAAATATTTACTAAACAAATTCAAATAG
Found at i:7598837 original size:21 final size:21
Alignment explanation
Indices: 7598787--7598839 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
7598777 TGACCTAAGC
* *
7598787 TAAATTCTAACTCAACTGATT
1 TAAATTCTTATTCAACTGATT
7598808 TAAATTCTTATTCAACTGATT
1 TAAATTCTTATTCAACTGATT
7598829 TAAATTCTTAT
1 TAAATTCTTAT
7598840 ATTTTTGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.15, G:0.04, T:0.45
Consensus pattern (21 bp):
TAAATTCTTATTCAACTGATT
Found at i:7602654 original size:41 final size:41
Alignment explanation
Indices: 7602608--7602685 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
7602598 TGTAAAGTCA
* * *
7602608 TATGCAATGCACAAGAAATGCCTGTGCGGTTATTCAAGTTG
1 TATGCAATACACAAAAAATGCCTGTGCAGTTATTCAAGTTG
* * *
7602649 TATGCACTACACAAAAAATGCTTGTGCAGTTGTTCAA
1 TATGCAATACACAAAAAATGCCTGTGCAGTTATTCAA
7602686 TTCTATTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (41 bp):
TATGCAATACACAAAAAATGCCTGTGCAGTTATTCAAGTTG
Found at i:7622982 original size:26 final size:26
Alignment explanation
Indices: 7622946--7622999 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
7622936 AATACATGAA
7622946 CATTGATCAGATTAGCATGTCCAACC
1 CATTGATCAGATTAGCATGTCCAACC
7622972 CATTGATCAGATTAGCATGTCCAACC
1 CATTGATCAGATTAGCATGTCCAACC
7622998 CA
1 CA
7623000 AATCAACTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
CATTGATCAGATTAGCATGTCCAACC
Found at i:7623349 original size:33 final size:33
Alignment explanation
Indices: 7623309--7623404 Score: 192
Period size: 33 Copynumber: 2.9 Consensus size: 33
7623299 TTTATTGACT
7623309 TAGCATACAAACAATATTATTTAAAAAAAAGAA
1 TAGCATACAAACAATATTATTTAAAAAAAAGAA
7623342 TAGCATACAAACAATATTATTTAAAAAAAAGAA
1 TAGCATACAAACAATATTATTTAAAAAAAAGAA
7623375 TAGCATACAAACAATATTATTTAAAAAAAA
1 TAGCATACAAACAATATTATTTAAAAAAAA
7623405 AAAGAATTAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.25
Consensus pattern (33 bp):
TAGCATACAAACAATATTATTTAAAAAAAAGAA
Found at i:7630686 original size:43 final size:42
Alignment explanation
Indices: 7630639--7630720 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 42
7630629 TTTGATAGAG
*
7630639 TTTTTAATAATCTTGTGCAGTAAATTCAATACTCTTTTATGTA
1 TTTTTAATAACCTTGTGCAGTAAATTCAATA-TCTTTTATGTA
* ** * *
7630682 TTTTTGATAACCTTGTTTAGTAAATTTAGTATCTTTTAT
1 TTTTTAATAACCTTGTGCAGTAAATTCAATATCTTTTAT
7630721 TTTTTGTATA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 8 0.24
43 25 0.76
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.52
Consensus pattern (42 bp):
TTTTTAATAACCTTGTGCAGTAAATTCAATATCTTTTATGTA
Found at i:7631018 original size:42 final size:42
Alignment explanation
Indices: 7630972--7631065 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 42
7630962 TTCTAATATT
* *
7630972 AGTATCTTTAATTGTA-TTTTGATAA-CAATATCTAGTAAATTC
1 AGTATCTTTAATAG-AGTTTTGATAATC-ATATATAGTAAATTC
* *
7631014 AGTATCTTTGATAGAGTTTTTGATAATCTTATATAGTAAATTC
1 AGTATCTTTAATAGAG-TTTTGATAATCATATATAGTAAATTC
*
7631057 AATATCTTT
1 AGTATCTTT
7631066 TCACTTTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
41 1 0.02
42 12 0.27
43 30 0.68
44 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.47
Consensus pattern (42 bp):
AGTATCTTTAATAGAGTTTTGATAATCATATATAGTAAATTC
Found at i:7638185 original size:12 final size:12
Alignment explanation
Indices: 7638168--7638215 Score: 78
Period size: 12 Copynumber: 4.0 Consensus size: 12
7638158 GTACAGAAAC
* *
7638168 ACCATTCAGTAA
1 ACCATTCAGCAT
7638180 ACCATTCAGCAT
1 ACCATTCAGCAT
7638192 ACCATTCAGCAT
1 ACCATTCAGCAT
7638204 ACCATTCAGCAT
1 ACCATTCAGCAT
7638216 GCTAATATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.35, C:0.31, G:0.08, T:0.25
Consensus pattern (12 bp):
ACCATTCAGCAT
Found at i:7639316 original size:186 final size:186
Alignment explanation
Indices: 7638938--7640256 Score: 1174
Period size: 186 Copynumber: 7.0 Consensus size: 186
7638928 TATAACAAAT
** * ** *
7638938 TATTGAAGGCGTTTTTTAGTAGATGATGCTTTTAATAATCTTAAAATTTTTTAAAAGAAAATTAT
1 TATTGAAGGTATTTTTCAGTAGAAAATGC-TTTAATAATCCTAAAATTTTTTAAAAGAAAATTAT
* * * * *
7639003 AGAATGCGTTTGTTATAAAAAAAAACAAGTGTGC-ATAATTATGTACAAAAATTAAACA-AATTA
65 AGAAGGCATTTGTTATAAAAAAATAC--CT-T-CAATAATTATGTACAAAAATTAAAAAGAATTA
* * * * * *
7639066 GTGAAGGTATTTTCCCAAAATAAACGCCTTTC-CTAACCATTTTAAAATTTGAGTACTAGTA
126 GTGAAGGTTTTTTCCTAGAATAAACGCC-TTCACTAATCGTCTTAAAATTTGAGTACTAGTA
* * * *
7639127 TATTGAAGGTGTTTTTCAGTAAAAAATGACTTTAATAATCCT-AATTTTTTTAAAAGGAAATTAT
1 TATTGAAGGTATTTTTCAGTAGAAAATG-CTTTAATAATCCTAAAATTTTTTAAAAGAAAATTAT
* * * * *
7639191 AGAACGCATTTGTTATAAAAAAAATACCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTA
65 AGAAGGCATTTGTTAT-AAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAAGAATTAGTG
* * * *
7639256 AAGGTTTTTTCCTAAAAT-AATGCCTTCACTAATCGTCTTAAAATTTGAGTATTGGTA
129 AAGGTTTTTTCCTAGAATAAACGCCTTCACTAATCGTCTTAAAATTTGAGTACTAGTA
* * * * * *
7639313 TATTTAAGGAATTTTTCAGTAGAAGGCA-CCTTTAATAATTCC-AAAAATTTTTAGAAAAAAAAT
1 TATTGAAGGTATTTTTCAGTAGAA--AATGCTTTAATAA-TCCTAAAATTTTTTA-AAAGAAAAT
* * *
7639376 TATTGAAGGCATTTGTTATAAAAAAATGCCTTCAAAAATTATGTACAAAAA-TAAAAATGAATTA
62 TATAGAAGGCATTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAA-GAATTA
* * * * *
7639440 GTAAAGGCATTTTT-CTAGAGTAAACGCCTTTACTAACCGTCTTAAAATTTGAGTACTAGTA
126 GTGAAGG-TTTTTTCCTAGAATAAACGCCTTCACTAATCGTCTTAAAATTTGAGTACTAGTA
* * *
7639501 TATTGAAGGTATTTTTCACTAGAAGATGCCTTTAATAATCCTAAAATTTTTTTAAA-AAAATTAT
1 TATTGAAGGTATTTTTCAGTAGAAAATG-CTTTAATAATCCTAAAATTTTTTAAAAGAAAATTAT
* **
7639565 AGAAGGCGTTTGTTATAAAAAAAAATAGGTATGC-ATAATTATGTACAAAAATTAAAACA-AATT
65 AGAAGGCATTTGTTAT--AAAAAAATACCT-T-CAATAATTATGTACAAAAATTAAAA-AGAATT
* * * * *
7639628 AGTGAAGGTGTTTTCCTAGAATAAATGCATTCACTAA-CAATCTTAAAATTTGAGTTCTAGTA
125 AGTGAAGGTTTTTTCCTAGAATAAACGCCTTCACTAATC-GTCTTAAAATTTGAGTACTAGTA
* * *
7639690 TATTGAAGGTAGGTTTT-AGTAGAAAACGCCTTTAATAAT-CTCAAGATTTTTTAAAAGAAAATT
1 TATTGAAGGTA-TTTTTCAGTAGAAAATG-CTTTAATAATCCT-AAAATTTTTTAAAAGAAAATT
* * * * * *
7639753 TTATAAGGCGTTTGTTAT-AAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAAGAATTATT
63 ATAGAAGGCATTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAAGAATTAGT
** * *
7639817 GAAGGCATTTTCCTAGAATACATGCCTTCACTAA-CTGTCTTAAAATTTGAGTACTAGTA
128 GAAGGTTTTTTCCTAGAATAAACGCCTTCACTAATC-GTCTTAAAATTTGAGTACTAGTA
* ** * * *
7639876 TATTGAAGGTATTTTTTAGTA-AAAGATGCATTTAATAATTTTAAAAATTTGTAGAAGAAAATTA
1 TATTGAAGGTATTTTTCAGTAGAAA-ATGC-TTTAATAATCCTAAAATTTTTTAAAAGAAAATTA
* * * * *
7639940 TTGAAGGCATTT-TTATCAAAAAAATATCTTCAATAATTATGTACAAAATTTAAAAGGAATTATT
64 TAGAAGGCATTTGTTAT-AAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAAGAATTAGT
* * * * * * * * * *
7640004 GAAAGTGTTTTT-CTGGAATAAACGCCTTCAATAATCTTCTTACAATTTCAATAATGGAA
128 GAAGGT-TTTTTCCTAGAATAAACGCCTTCACTAATCGTCTTAAAATTTGAGTACTAGTA
* * * * * * * *
7640063 TATTGAAGATGTTTTTCATTGGAAGACGCATTTAATAATACC-AAAAATTTTAAAAAG-AAATTA
1 TATTGAAGGTATTTTTCAGTAGAAAATGC-TTTAATAAT-CCTAAAATTTTTTAAAAGAAAATTA
* * * * * *
7640126 TATAATGCATTTGTTAT-GAAAAACACCTACAATAATTATGTACATAAATTAAAAAGAATTAGTG
64 TAGAAGGCATTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAAGAATTAGTG
* * * * * * * *
7640190 AAGGCATTTTT-CTACAATACACACCTTCACTAATTGTCTTAAAATTTAAGTAATAGAA
129 AAGG-TTTTTTCCTAGAATAAACGCCTTCACTAATCGTCTTAAAATTTGAGTACTAGTA
*
7640248 TATTAAAGG
1 TATTGAAGG
7640257 CGTTTTGCAT
Statistics
Matches: 931, Mismatches: 158, Indels: 86
0.79 0.13 0.07
Matches are distributed among these distances:
185 108 0.12
186 256 0.27
187 221 0.24
188 160 0.17
189 152 0.16
190 33 0.04
191 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (186 bp):
TATTGAAGGTATTTTTCAGTAGAAAATGCTTTAATAATCCTAAAATTTTTTAAAAGAAAATTATA
GAAGGCATTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAAGAATTAGTGAA
GGTTTTTTCCTAGAATAAACGCCTTCACTAATCGTCTTAAAATTTGAGTACTAGTA
Found at i:7640017 original size:562 final size:559
Alignment explanation
Indices: 7638938--7640199 Score: 1521
Period size: 562 Copynumber: 2.3 Consensus size: 559
7638928 TATAACAAAT
* * * * * *
7638938 TATTGAAGGCGTTTTTTAGTAGATGATGCTTTTAATAATCTTAAAATTTTTTAAAAGAAAATTAT
1 TATTGAAGGTGTTTTTCACTAGAAGATGCATTTAATAATCCTAAAATTTTTTAAAA-AAAATTAT
*
7639003 AGAATGCGTTTGTTATAAAAAAAAACAAGTGTGCATAATTATGTACAAAAATTAAACAAATTAGT
65 AGAATGCGTTTGTTATAAAAAAAAACAAGTATGCATAATTATGTACAAAAATTAAACAAATTAGT
* * *
7639068 GAAGGTATTTTCCCAAAATAAACGCCTTTCCTAACCATTTTAAAATTTGAGTACTAGTATATTGA
130 GAAGGTATTTTCCCAAAATAAACGCCATTCCTAACAATCTTAAAATTTGAGTACTAGTATATTGA
* * * *
7639133 AGGTGTTTTTCAGTAAAAAATGACTTTAATAATCCTAATTTTTTTAAAAGGAAATTATAGAACGC
195 AGGTGGTTTTCAGTAAAAAACGACTTTAATAATCCTAAATTTTTTAAAAGAAAATTATAGAACGC
* **
7639198 ATTTGTTATAAAAAAAATACCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTAAAGGTTT
260 ATTTGTTAT-AAAAAAATACCTTCAATAATTATGTACAAAATTTAAAAAGAATTATTAAAGGCAT
* * *
7639263 TTTCCTAAAATAATGCCTTCACTAATCGTCTTAAAATTTGAGTATTGGTATATTTAAGGAATTTT
324 TTTCCTAAAATAATGCCTTCACTAATCGTCTTAAAATTTGAGTACTAGTATATTGAAGGAATTTT
* *
7639328 TCAGTAGAAGGCACCTTTAATAATTCCAAAAATTTTTAGAAAAAAAATTATTGAAGGCATTTGTT
389 TCAGTAAAAGGCA-CTTTAATAATTCCAAAAATTTGTAGAAAAAAAATTATTGAAGGCATTTGTT
* *
7639393 ATAAAAAAATGCCTTCAAAAATTATGTACAAAAATAAAAATGAATTAGTAAAGGCATTTTTCTAG
453 ATAAAAAAATACCTTCAAAAATTATGTACAAAAATAAAAAGGAATTAGTAAAGG-ATTTTTCTAG
* * * * * * *
7639458 AGTAAACGCCTTTACTAACCGTCTTAAAATTTGAGTACTAGTA
517 AATAAACGCCTTCAATAACCGTCTTAAAATTTCAATAATAGAA
* * *
7639501 TATTGAAGGTATTTTTCACTAGAAGATGCCTTTAATAATCCTAAAATTTTTTTAAAAAAATTATA
1 TATTGAAGGTGTTTTTCACTAGAAGATGCATTTAATAATCCTAAAATTTTTTAAAAAAAATTATA
* * *
7639566 GAAGGCGTTTGTTATAAAAAAAAATAGGTATGCATAATTATGTACAAAAATTAAAACAAATTAGT
66 GAATGCGTTTGTTATAAAAAAAAACAAGTATGCATAATTATGTACAAAAATT-AAACAAATTAGT
* * * * *
7639631 GAAGGTGTTTTCCTAGAATAAATG-CATTCACTAACAATCTTAAAATTTGAGTTCTAGTATATTG
130 GAAGGTATTTTCCCAAAATAAACGCCATTC-CTAACAATCTTAAAATTTGAGTACTAGTATATTG
* * * *
7639695 AAGGTAGGTTTT-AGTAGAAAACGCCTTTAATAAT-CTCAAGATTTTTTAAAAGAAAATTTTATA
194 AAGGT-GGTTTTCAGTAAAAAACGACTTTAATAATCCT-AA-ATTTTTTAAAAGAAAATTATAGA
* * * *
7639758 AGGCGTTTGTTAT-AAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAAGAATTATTGAAGG
256 ACGCATTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAATTTAAAAAGAATTATTAAAGG
* *
7639822 CATTTTCCTAGAATACATGCCTTCACTAA-CTGTCTTAAAATTTGAGTACTAGTATATTGAAGGT
321 CATTTTCCTAAAATA-ATGCCTTCACTAATC-GTCTTAAAATTTGAGTACTAGTATATTGAAGGA
* ** *
7639886 ATTTTTTAGTAAAAGATGCA-TTTAATAATTTTAAAAATTTGTAG-AAGAAAATTATTGAAGGCA
384 ATTTTTCAGTAAAAG--GCACTTTAATAATTCCAAAAATTTGTAGAAAAAAAATTATTGAAGGCA
* * * * *
7639949 TTT-TTATCAAAAAAATATCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTGAAAGTG-T
447 TTTGTTAT-AAAAAAATACCTTCAAAAATTATGTACAAAAATAAAAAGGAATTAGT-AAAG-GAT
* * * * *
7640012 TTTTCTGGAATAAACGCCTTCAATAATCTTCTTACAATTTCAATAATGGAA
509 TTTTCTAGAATAAACGCCTTCAATAACCGTCTTAAAATTTCAATAATAGAA
* * * * *
7640063 TATTGAAGATGTTTTTCATTGGAAGACGCATTTAATAATACC-AAAA-ATTTTAAAAAGAAATTA
1 TATTGAAGGTGTTTTTCACTAGAAGATGCATTTAATAAT-CCTAAAATTTTTTAAAAA-AAATTA
* * * ** * *
7640126 TATAATGCATTTGTTAT---GAAAAACACCTA--CAATAATTATGTACATAAATTAAAAAGAATT
64 TAGAATGCGTTTGTTATAAAAAAAAACAAGTATGC-ATAATTATGTACAAAAATTAAACA-AATT
*
7640186 AGTGAAGGCATTTT
127 AGTGAAGGTATTTT
7640200 TCTACAATAC
Statistics
Matches: 599, Mismatches: 84, Indels: 37
0.83 0.12 0.05
Matches are distributed among these distances:
557 5 0.01
558 34 0.06
559 8 0.01
561 12 0.02
562 282 0.47
563 219 0.37
564 36 0.06
565 3 0.01
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (559 bp):
TATTGAAGGTGTTTTTCACTAGAAGATGCATTTAATAATCCTAAAATTTTTTAAAAAAAATTATA
GAATGCGTTTGTTATAAAAAAAAACAAGTATGCATAATTATGTACAAAAATTAAACAAATTAGTG
AAGGTATTTTCCCAAAATAAACGCCATTCCTAACAATCTTAAAATTTGAGTACTAGTATATTGAA
GGTGGTTTTCAGTAAAAAACGACTTTAATAATCCTAAATTTTTTAAAAGAAAATTATAGAACGCA
TTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAATTTAAAAAGAATTATTAAAGGCATTT
TCCTAAAATAATGCCTTCACTAATCGTCTTAAAATTTGAGTACTAGTATATTGAAGGAATTTTTC
AGTAAAAGGCACTTTAATAATTCCAAAAATTTGTAGAAAAAAAATTATTGAAGGCATTTGTTATA
AAAAAATACCTTCAAAAATTATGTACAAAAATAAAAAGGAATTAGTAAAGGATTTTTCTAGAATA
AACGCCTTCAATAACCGTCTTAAAATTTCAATAATAGAA
Done.