Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 6 of 93
Found at i:762877 original size:184 final size:184
Alignment explanation
Indices: 762542--762881 Score: 466
Period size: 184 Copynumber: 1.8 Consensus size: 184
762532 GTTGACTTAG
* * * * *
762542 GCATACGGAGTTCATTCCCAATCTAAGATCTGACCGGACCGGGGGTTGTAGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGCACCGAGGGTTGCAGCAGCAGGATCGACA
* * *
762607 GCATGCAGGGGGGACCGGGTCAATCCCCGACTTGCGCATTCTACCTCTTCGACCGACTGAGTGCC
66 GCACGCAGGGGGGACCGGGTCAATCCCCGACTTACGCATTCTACCTCTTCGACCGACTGAATGCC
**
762672 CTCATGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CTCATGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
762726 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGCATCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGCACCGAGGGTTGCAGCAGCAGGATCGACA
** * * * * *
762791 GCACGCAGGGGGGACCGGGTTGATCCCTGGCTTACGCATTCTGCCTCTTCGACTGGCTGAATG-C
66 GCACGCAGGGGGGACCGGGTCAATCCCCGACTTACGCATTCTACCTCTTCGACCGACTGAATGCC
*
762855 CTACATGCCCGTTTCGTGGGTTGGCTT
131 CT-CATGCCCGTTTCATGGGTTGGCTT
762882 TGGCCGAGCG
Statistics
Matches: 133, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
183 3 0.02
184 130 0.98
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGCACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCAATCCCCGACTTACGCATTCTACCTCTTCGACCGACTGAATGCC
CTCATGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:763464 original size:26 final size:26
Alignment explanation
Indices: 763412--763464 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
763402 GTTGGCTTAG
*** *
763412 GCATACAAAGTTCATTCTGTGTCTAA
1 GCATACAAAGTTCATTCCCAGTATAA
*
763438 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAAAGTTCATTCCCAGTATAA
763464 G
1 G
763465 ATCAGACCGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTATAA
Found at i:763592 original size:185 final size:186
Alignment explanation
Indices: 763252--763624 Score: 468
Period size: 185 Copynumber: 2.0 Consensus size: 186
763242 GTTGGCTTAG
* ** ** *
763252 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGAATCGAGGGTTGTGGTAGCAAGATCGACA
1 GCATACAGAGTTCATTCCCAGTATAAGATCAGACCGAATCGAGGGTTGCAGCAGCAAGATCGACA
* * **
763317 GCACATGGGGGGAGAACCGGATCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGAGCA
66 GCACATGGGGGGAGAACCGGATCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCA
* * *
763382 CCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACAAAGTTCATTCTGTGTCTAA
131 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCTATGTCTAA
* **
763438 GCATACAGAGTTCATTCCCAGTATAAGATCAGACCGAA-CTGAGGGTTGCAGCAGCAGGATCGGT
1 GCATACAGAGTTCATTCCCAGTATAAGATCAGACCGAATC-GAGGGTTGCAGCAGCAAGATCGAC
* * * *
763502 AGCATGCA-GGGGGG-G-ACCGG-GCTGATCCTCGACTTGCGTATTCTGCCTCTCCGACCGGTTG
65 AGCA--CATGGGGGGAGAACCGGATC-GATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTG
* **
763563 AGCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAA
127 AGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCTATGTCTAA
763623 GC
1 GC
763625 CCCAGCCAAA
Statistics
Matches: 160, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
184 1 0.01
185 93 0.58
186 58 0.36
187 6 0.04
188 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (186 bp):
GCATACAGAGTTCATTCCCAGTATAAGATCAGACCGAATCGAGGGTTGCAGCAGCAAGATCGACA
GCACATGGGGGGAGAACCGGATCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCA
CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCTATGTCTAA
Found at i:763798 original size:26 final size:26
Alignment explanation
Indices: 763768--763872 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
763758 GTTGACTTAG
763768 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
763794 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
763820 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
763846 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
763872 G
1 G
763873 ATCGGATTAG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:764693 original size:26 final size:26
Alignment explanation
Indices: 764657--764709 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
764647 GTTGACTTAG
764657 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
764683 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
764709 G
1 G
764710 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:769840 original size:26 final size:26
Alignment explanation
Indices: 769811--769863 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
769801 GTTGACTTAG
769811 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
** *
769837 GCATGTGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
769863 G
1 G
769864 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:770286 original size:157 final size:157
Alignment explanation
Indices: 769843--770336 Score: 489
Period size: 157 Copynumber: 3.1 Consensus size: 157
769833 CTAAGCATGT
* * *
769843 GGAGTTCATTCCCA-GTCTAAGATCAAACCGAACCGAGGGTTGCGGCAGTAGGATCGGCAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCG-ACCGAGGGTTGCGGCAGCAGGATTGGCAGCACG
* * * * * ** *
769907 -CAGGGGGACTGGGCCAATCCCCGACTTACGCATTCTGCCTCTCCGATCGGGTGAGCGCCCGCAC
64 TAAGGGGGACCGGGCCAGTCCCAGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCAC
* *
769971 GCCCGTTTCATGGGTTGGCTTAGGCATA-
129 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
** * * * *
769999 GCGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGC-GAGACTGGCAGCAC
1 G-GAGTTCATTCCATGTCTAAG-ATCAGACCGACCGAGGGTTGCGGCAGCAG-GATTGGCAGCAC
** * * * * * * * *
770063 GTAGAGGGGGACCGAACC-GATCCCTGCCTTGCGTATTATGCCTCTCTGGCTGGCTCAACGCCCG
63 GTA-AGGGGGACCGGGCCAG-TCCCAGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCG
* * **
770127 CACGCTCATTTCGTGGGTTGACTTAGGTGTAC
126 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * *
770159 GGAGTTCATTTCA-GTCTAAGATCAGACCAGATCAAGGGTTGCGGTAGCAGGATTGACAGCACGT
1 GGAGTTCATTCCATGTCTAAGATCAGACC-GACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGT
*
770223 AAGGGGGACCGGGCCAGTCTCCAG-CTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCAC
65 AAGGGGGACCGGGCCAGTC-CCAGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCAC
*
770287 GCTCGTTTTGTGGGTTGGCTTAGGCATAC
129 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
770316 AGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
770337 CATACGGAGT
Statistics
Matches: 265, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 5 0.02
157 129 0.49
158 50 0.19
159 80 0.30
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTA
AGGGGGACCGGGCCAGTCCCAGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:771539 original size:26 final size:26
Alignment explanation
Indices: 771509--771561 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
771499 GTTGACTTAG
*
771509 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
771535 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
771561 G
1 G
771562 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:772056 original size:158 final size:159
Alignment explanation
Indices: 771590--772207 Score: 403
Period size: 158 Copynumber: 3.8 Consensus size: 159
771580 TTACGGTAGT
* * * *
771590 AGGATCGACAGCACGCA-AA-GGGACC-GGGCAGGTCCCCGACTTACGCATTCTGCCTCTCCGGG
1 AGGATCGACAGCACGCAGAAGGGGACCAGGCCA-ATCTCCGACTTACGCATTCTGCCTCTCCGGC
* * * * ** *
771652 TGGTTGAGCGCCCGCACGCCCGATTCGTGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTA
65 TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
* * *
771717 AGCCCCAGTCGGA-TCGAGGGTTGTGGCAGC
130 AGCCCCAGTCGGACT-AAGGGTTGCGACAGC
* * * * * * * * *
771747 GGGATCGGCAGCACGCAGAAGGTGACCAGGCCGATCTCCGGCTTGCGCATTATGCCTTTTCGGCT
1 AGGATCGACAGCACGCAGAAGGGGACCAGGCCAATCTCCGACTTACGCATTCTGCCTCTCCGGCT
* ** * * * *
771812 GGCTTAGCATCTGCACGCTCGTTTCCTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTA
66 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTA
** ** * * * *
771876 AG-ATCAAACTGGACCAAAGGTTGCGATAGT
130 AGCCCCAGTC-GGACTAAGGGTTGCGACAGC
* ** * * * *
771906 AGGATC-ACAGCACGTAGGGGGGGATCGGGCTAATC-CTTGACTTACGCATTCTGCCTCTCCGGC
1 AGGATCGACAGCACGCAGAAGGGGACCAGGCCAATCTC-CGACTTACGCATTCTGCCTCTCCGGC
** *
771969 CAGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
65 TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
*
772034 AGCCCCAGTCGGACTAAGGGTTGTGGTAGCAGGACC
130 AGCCCCAGTCGGACTAAGGGTTG-CG-A-CA-G--C
* * ** * * *
772070 GATAACGAGATCGACAGCACGTA-AAGGGGGACCGGGCTGATC-CCCAGCTTGCGCATTATGCCT
1 ----A-G-GATCGACAGCACGCAGAA-GGGGACCAGGCCAATCTCCGA-CTTACGCATTCTGCCT
* * * * * * *
772133 CTTCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTCGGCATACGGAGTTCA-TCC
58 CTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCC
*
772197 CTAGTCTAAGC
123 AT-GTCTAAGC
772208 ATATGAAGTT
Statistics
Matches: 347, Mismatches: 89, Indels: 36
0.74 0.19 0.08
Matches are distributed among these distances:
157 19 0.05
158 109 0.31
159 99 0.29
160 7 0.02
161 1 0.00
162 1 0.00
168 1 0.00
169 1 0.00
170 9 0.03
171 100 0.29
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
AGGATCGACAGCACGCAGAAGGGGACCAGGCCAATCTCCGACTTACGCATTCTGCCTCTCCGGCT
GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
GCCCCAGTCGGACTAAGGGTTGCGACAGC
Found at i:772670 original size:672 final size:668
Alignment explanation
Indices: 771280--777468 Score: 2536
Period size: 672 Copynumber: 9.1 Consensus size: 668
771270 CCCGACTTGT
* * ** ** ** ** *
771280 GCATTCTGCCTCTCTGACCAGCTGAGTACCGGCACGCTCTTTTTGTGGGTTGGTTTAGGCATACG
1 GCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACGCTCGATTCATGGGTTGGCTTAGGCATACG
* *
771345 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACTGGCAGCGAGAT
66 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCGAGAT
* * * * * *
771410 CGACAGCACGCAGAGGGGGATCGTGTTGATCCCCAGCTTACGCATTATGCCTCTCCGATCGGTTG
131 CGACAGCACGTAGAGGGGGACCGGGCTGATCCCCAGCTT-CGCATTATGCCTCTTCGACCGGTTG
*
771475 AGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATA
195 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATA
* * * * * *
771540 CAGAGTTCATTCCTAGTCTAAGATCGGA-CTGGATCGAGGGTTACGGTAGTAGGATCGACAGCAC
260 GA-AGTTCATTCC-AGTCTAAGATCGGATC-AGACCGAGGGTTACGGCAGCAGGATCGAAAGCAC
* * ** * * *
771604 GCA-AAGGGACCGGGCAGGTCCCCGACTTACGCATTCTGCCTCTCCGGGTGGTTGAGCGCCCGCA
322 GCAGAGGGGACCGGGCAGATCCCCGACTTGTGCATTCTGCCTCT-CTGATGGCTGAGCGCCCGCA
* *
771668 CGCCCGA-TTCGTGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTAAGCCCCAGTCGGATC
386 CGCCC-ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
* * * * *
771732 GAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAAGGTGACCAGGCCGATCTCCGGCTTGCGCAT
450 GAGGGTTGTGGCAGTGGGACCAGCAGCACGCAGAAGGGGACCAGGCCGATCTCCAGCTTGCGCAT
* * * *
771797 TATGCCTTTTCGGCTGGCTTAGCATCTGCACGCTCGTTTCCTGGGTTGACTTATGCATACAGAGT
515 TATGCCTCTTCGGCTGGCTCAGCACCCGCACGCTCGTTTCCTGGGTTGACTTATGCATACAGAGT
* * *
771862 TCATTCCCAGTCTAAGATCAAACTGGACCAAAGGTTGCGATAGTAGGATCACAGCACGTAGGGGG
580 TCATTCCCAGTCTAAGATCAAACTAGACCAAAGGTTGCGATAGTAGGATCACAGCACGCAGAGGG
*
771927 GGATCGGGCTAATCCTTGACTTAC
645 GGATCGGGCTAATCCTCGACTTAC
* *
771951 GCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACA
1 GCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACGCTCGATTCATGGGTTGGCTTAGGCATACG
* * * *
772016 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACTAAGGGTTGTGGTAGCAGGACCGATAACGAGAT
66 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCGAGAT
* *
772081 CGACAGCACGTAAAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGACCGGCTG
131 CGACAGCACGTAGAGGGGGACCGGGCTGATCCCCAGCTT-CGCATTATGCCTCTTCGACCGGTTG
* *
772146 AGCACCCGCACGCTCGTTTCATGGGTTGACTTCGGCATACGGAGTTCATCCCTAGTCTAAGCATA
195 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATA
* *
772211 TGAAGTTCATTCTCAATCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAAGATCGAAAGCACG
260 -GAAGTTCATTC-CAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAGGATCGAAAGCACG
* * * * * *
772276 TAGAGGGGACCGAGCTGATCCCCGACTTGTGCATTCTGGCTCTCTGACTGACTGAGCGCCCGTAC
323 CAGAGGGGACCGGGCAGATCCCCGACTTGTGCATTCTGCCTCTCTGA-TGGCTGAGCGCCCGCAC
* * * *
772341 GCCCATTTTGTGGGTTGGCTTAGGCAT-CGGACGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
387 GCCCATTTCGTGGGTTGGCTTAGGCATAGGGA-GTTCATTCCATGTCTAAGCCCCAGTCGGACCG
* * * * * *
772405 GGGGTTGTGGCAATGGGACCAGCAGCACGCAGAGGGGGATCGGGTCGATC-CTCAGCTTGCGCAT
451 AGGGTTGTGGCAGTGGGACCAGCAGCACGCAGAAGGGGACCAGGCCGATCTC-CAGCTTGCGCAT
* * *
772469 TATGCCTCTTC-GATCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAG
515 TATGCCTCTTCGGCT-GGCTCAGCACCCGCACGCTCGTTTCCTGGGTTGACTTATGCATACAGAG
* ** *
772533 TTCATTTCCAGTCTAAGATCGGA-TCAGACCAAGGGTTGCGATAGTAGGATCGACAGCACGCA-A
579 TTCATTCCCAGTCTAAGATCAAACT-AGACCAAAGGTTGCGATAGTAGGATC-ACAGCACGCAGA
* * * *
772596 GGGGGA-CTGGTTCGATCAC-CGGCTTAC
642 GGGGGATCGGGCT-AATC-CTCGACTTAC
* * * * * * * *
772623 GCATTTTGCCTTTTCGGCCAGCTGAGTGCTCGCGCGTTCGATTCATGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACGCTCGATTCATGGGTTGGCTTAGGCATACG
* * * * *
772688 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTAGCAGTATGACC-AGCAGCGGGA
66 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGA-CAGCGAGA
* * * * * *
772752 TCGACAGCATGTCGTGGGGGACCAGGCTGATCCCTGACCTTCGCATTATGCCTCTCTGGTCAGCC
130 TCGACAGCACGTAGAGGGGGACCGGGCTGATCCC-CAGCTTCGCATTATG-C-CTCT--TC-G--
* * * *
772817 TCTCCTGTCGGTTGAGCGCTCGCACGCTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATCC
187 ---AC---CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
* * * * * **
772882 CCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGCAGCA
246 CTAGTCTAAGCATA-GAAGTTCATT-CCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCA
* ** * ** * *
772947 GGATGGGTAGCACGCAGGGGGGATTGGGCCA-AT-CCCTAGCTTGTGCATTCTACCTCTCTGATC
309 GGATCGAAAGCACGCAGAGGGGACCGGG-CAGATCCCCGA-CTTGTGCATTCTGCCTCTCTGAT-
* * *
773010 GGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
371 GGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * *
773075 GCCCCAGTCGGACCGAGGGTTGTGGTAGTAGGACCAGCAGTGGGATCGACAGCATGCCGAGAGGG
436 GCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACCAGCA----G--C-AC-GCA-G--AAG-GGG
* * * * *
773140 ACCAGGCTGATC-CCCGACTTGCGCATTATGCCTCTCCGACCGGCCTCTCCTGTCGGCTGAGCGC
489 ACCAGGCCGATCTCCAG-CTTGCGCATTATGCCTCT----TCGG------C--T-GGCTCAGCAC
* * * * * * *
773204 TCGCACGCTCATTTCGTGGGTTTACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
540 CCGCACGCTCGTTTCCTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCT----A-A--GA-
* * * ** * *
773269 TTCATTCCCAATCTAAGATTAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG-G
597 -TCA-----AA-C------T--A---GACCAAAGGTTGCGATAGTAGGATC-ACAGCACGCAGAG
* * * *
773333 GGGGATTGGGCCAATCC-CTGGCTTGC
643 GGGGATCGGGCTAATCCTC-GACTTAC
* * * * * * * *
773359 GCATTCTACCTCTCCGACC-GACTGAGCGCCCGCACACCCGTTTCATGGGTTAGCTTAGGCATAG
1 GCATTCTGCCTCTCCGGCCAG-CTGAGCGCCCACACGCTCGATTCATGGGTTGGCTTAGGCATAC
* * * *
773423 GGAGTTCATTCCATGTCTAAGCCCCTGCCGGACCGAGGGTTGTGGCAGCA-G---G--A-TG-G-
65 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCGAGA
* * * * ** * * * *
773479 --G-CAGCACGCAGAGGGGGATCGGACCGATCCCTGGCTTACGTATTATGCCTCTCCTG-CTGGC
130 TCGACAGCACGTAGAGGGGGACCGGGCTGATCCCCAGCTT-CGCATTATGCCTCTTC-GACCGGT
* * * ** * ** * *
773540 TCAGTGCCTGCATTCTCATTTTGTAGGTTGACTTAGGCGTACGGAGTTCATTCCC-AG--T---C
193 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGC
* ** *
773599 -T--AAG--------A-TC--AGA-C----CAGACCGAGGGTTGCGGCAATAGGATCGACAGCAC
257 ATAGAAGTTCATTCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAGGATCGAAAGCAC
* * * * * * * ****
773645 GCA-AGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGC
322 GCAGA-GGGGACCGGGCAGATCCCCGACTTGTGCATTCTGCCTCT-CTGATGGCTGAGCGCCCGC
* * * * *
773709 ACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGAAGTTCA
385 ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-A---T--G--T-CTAAG----
*** *** * * *
773774 TTCCCAGTCTACGATCAGACCGGACCGAGGGTTACAGCAACAGGACCAGCAGTACGTA-AGGAGG
437 --CCC---C-A-G-T-----CGGACCGAGGGTTGTGGCAGTGGGACCAGCAGCACGCAGAAG-GG
* * * * * * * * * *
773838 GATC-GAGCCGATCCCCTGCTTACGCATTCTACCTCTTCGACTGGCTGAGCGCCCGCAGGCTCGT
488 GACCAG-GCCGATCTCCAGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGCACCCGCACGCTCGT
* * * * ** * ** * * * *
773902 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGTTGGATCGAGGGTT
552 TTCCTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATCAAACTAGACCAAAGG-T
* ** * * * * * * * * * * *
773966 GTGGCAGCAGGACCAACAACGGGATCGGCAACACGCAAAGAGGGACCAGGTTGATCCCCCACTTG
615 -T----GC--GA--TAGTA--GGATC-ACAGCACGCAGAGGGGGATCGGGCTAATCCTCGACTTA
*
774031 T
668 C
* * *** * * * ** * * * *
774032 GTATTATGCCTCTCCAATCGGTTGAGTGCCCGTACGCTCGTTTCATGGGTTGACGTGGGCATACG
1 GCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACGCTCGATTCATGGGTTGGCTTAGGCATACG
* * * ** * **** ** * *
774097 AAGTTCA-TCCCTAATCTAAGCATACGGAGTTC--ATTCCCAGTCT-AAG-ATCA-GACCAGACT
66 GAGTTCATTCCAT-GTCTAAGC---CCCAG-TCGGACTGAGGGT-TGTGGCAGCAGGACC-GACA
* * * * * * * * *
774156 GAGGGTTGCGATAGCACGCAG-GGGGGATCAGGCCGATCCCC-GACTTGCGCATTCTGCCTCTTC
124 GCGAGAT-CGACAGCACGTAGAGGGGGACCGGGCTGATCCCCAG-CTT-CGCATTATGCCTCTTC
* * * * * * * * *
774219 GATCGGCTGAGCGCCCTACACGCCCGTTTCGTGGGATGGCGTAGGCATAGGGAGTTCAT---T-G
186 GACCGGTTGAGCGCCC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAG
* * ** *
774280 -C-ATGTC-T--AAG--C---CC---C--AG--C---TGA-ACCGAGGGTTGTGGCAGCTGGA-C
250 TCTAAG-CATAGAAGTTCATTCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAGGATC
** * * * ***
774323 TGACAA-CACATAGAGGGGGACCGGGCCA-ATCCCCGACTTGCT-CATTATGCCTTTTCGGCCAG
314 -GA-AAGCACGCAGA-GGGGACCGGG-CAGATCCCCGACTTG-TGCATTCTGCC-TCTCTGATGG
* * * * * * * * *
774385 CTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCTTATGGAGATCATTCCCA-GCCCAAG
373 CTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
** * * * * * ** * * *
774449 -ATCGGACGAAACCTAGGGTTGTGGCAGTAGGA-TTGACAGCACGCAG-GGGGGACTAGGCCAAT
437 CCCCAGTCG-GACCGAGGGTTGTGGCAGTGGGACCAG-CAGCACGCAGAAGGGGACCAGGCCGAT
* * * * * *** * * * *
774511 C-CCTGGCTTGCGCATTCTACCTCTCCGACCAACT-GGTGA-CCGCACGTTCGTTTCATGGGTTG
500 CTCC-AGCTTGCGCATTATGCCTCTTCGGCTGGCTCAG-CACCCGCACGCTCGTTTCCTGGGTTG
* * * *
774573 GCTTAGGCATACGGATTTCATT-CCATGTCTAAGCATACGGAGTTCATTCCATCTTTAAGACTGG
563 ACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-AT-C--A----A----A-C--T---A---G
* ** * * * ** *
774637 ACCGGATCGAGGGTTGCGGCAGTAGGATCGAAAACACACAG-GGGGGATCGGGCCGATACC-CGG
606 ACC--A---AAGGTTGCGATAGTAGGATC-ACAGCACGCAGAGGGGGATCGGGCTAAT-CCTCGA
*
774700 CTTGC
664 CTTAC
* * * * * * * * ** *
774705 GTATTCCGCCTCTCTGGCCGGTTGAGCACCGACACGC-CTATTTTGTGGGTTGGTTTAGGCATAC
1 GCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACGCTCGA-TTCATGGGTTGGCTTAGGCATAC
* * **
774769 GGAGTTCATTCCATGTCTAAACCCCAGTCGGACTGAGGGTTGTGGCAGCAGGATCGGTAGC-AGG
65 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCGA-G
** * *
774833 ATCGACAGCACGTAGAGGGGGACCGTACTGATCCCCAGCTTACGCATTATGCCTCTTCGGCCAGT
129 ATCGACAGCACGTAGAGGGGGACCGGGCTGATCCCCAGCTT-CGCATTATGCCTCTTCGACCGGT
* * * * *
774898 TGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCA
193 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
* * * * * * * *
774963 TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACGGAGGGTTGCGACAGTAGGATC-AACAGC
258 TAGA-AGTTCATT-CCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAGGATCGAA-AGC
* * * * * * **
775027 ACGCAG-GGGGACCAGGCAGGTCCCCGGCTTGCGCATTTTGCCTCTCCAGGCGGCTGAGCGCCCG
320 ACGCAGAGGGGACCGGGCAGATCCCCGACTTGTGCATTCTGCCTCT-CTGATGGCTGAGCGCCCG
* * * * *
775091 CACGCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTGATTCCATGTCTATGCCCTAGTCGGAC
384 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
* * * * * * * *
775156 TGAGGGTTGTGGTAGCGGGATC-GACAGCATGCAGAAGGGGACCAGACCGATCTTC-GACTTACG
449 CGAGGGTTGTGGCAGTGGGACCAG-CAGCACGCAGAAGGGGACCAGGCCGATCTCCAG-CTTGCG
* * * * * * *
775219 CATTATGCCTTTTCGG-TCAGCTTAGCGA-TCGCACACTCGTTTCGTGGGTTGATTTATGCATAC
512 CATTATGCCTCTTCGGCT-GGCTCAGC-ACCCGCACGCTCGTTTCCTGGGTTGACTTATGCATAC
* * * * * * ** *
775282 AGAGTTCATTCCCAGTCTAAGATCGAA-TCGGATCGAAGGTTACGATAGCAGGATTGGCAACACG
575 AGAGTTCATTCCCAGTCTAAGATCAAACT-AGACCAAAGGTTGCGATAGTAGGA-TCACAGCACG
* *** ** **
775346 CAG-GGGGGACCAAACCGATCCTCGACTTGT
638 CAGAGGGGGATCGGGCTAATCCTCGACTTAC
* * *
775376 GCATTCTACCTCTCCGGCCAGCTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATAC
1 GCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACGCTCGA-TTCATGGGTTGGCTTAGGCATAC
* * ** * * * * *
775440 GGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGGGTTGTGGTAACAGGACCGATAGTGGGA
65 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCGAGA
* * * * * * **
775505 TCGGCAGCACGTAGAGGGGGATCGGGCTGATCCTCAACTTGTGCATTATGCCTCTCCGGTCGGTT
130 TCGACAGCACGTAGAGGGGGACCGGGCTGATCCCCAGCTT-CGCATTATGCCTCTTCGACCGGTT
* * * *
775570 AAGCGCCCGCACACTTGTTTCATGGGTTGACTTCA-ACATACGGAGTTCATCCCTAGTCTAAGCA
194 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTT-AGGCATACGGAGTTCATCCCTAGTCTAAGCA
* * * * * * * * *
775634 TACGAAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAAGGTTACAGTAGCAAGATTGACAGCA
258 TA-GAAGTTCATTC-CAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAGGATCGAAAGCA
* * * * * * * * *
775699 CGCAGGGGGGATCGGGCTGATCCCCGGCTTGCGTATTCTACCTCTCCGATCGACTGAGCGCCCGC
321 CGCAGAGGGGACCGGGCAGATCCCCGACTTGTGCATTCTGCCTCTCTGAT-GGCTGAGCGCCCGC
* * * *
775764 ACGCCCGTTTCATGGGTTGGCTTAGGCATCGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
385 ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
* ** * * *** *
775829 GAGGGTTGTGGAAGCCGGACCAGCAGCACGTAGAGGGGGATTGGGCCGATC-CTCAGCTTGCGGA
450 GAGGGTTGTGGCAGTGGGACCAGCAGCACGCAGAAGGGGACCAGGCCGATCTC-CAGCTTGCGCA
* * * * * *
775893 TTATGCCTCTTCGG-TCGGTTCAACGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGA
514 TTATGCCTCTTCGGCT-GGCTCAGCACCCGCACGCTCGTTTCCTGGGTTGACTTATGCATACAGA
* * * * * *
775957 GTTCATTCCCAGTCTAAGATCAGAC-CGAATCGAAGGTTGCGACAGTAGGATCGACAGCACGTAG
578 GTTCATTCCCAGTCTAAGATCAAACTAG-ACCAAAGGTTGCGATAGTAGGATC-ACAGCACGCAG
* ** * *
776021 -GGGGGA-CTGGTCCGATCC-CCAGCTTTC
641 AGGGGGATC-GGGCTAATCCTCGA-CTTAC
* * * * * * * * *
776048 GCATTCTGCCTCTTCGACCAGCTGAGTG-CTAGCGCACTTGATTCGTGGGTTGGTGCATTCGTGC
1 GCATTCTGCCTCTCCGGCCAGCTGAGCGCCCA-CACGCTCGATTCATGGGTT-G-GC-TTAG-GC
* * * * * * *
776112 ATACGAAGTTTATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAAGACCAACAGC
61 ATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGACAGC
* * * * ***
776177 GGGATCGACAGCA-TTCAGAGGGGGACCAGGCCGAT-CTTTGACTTACGCATTATGCCTCTCCGA
126 GAGATCGACAGCACGT-AGAGGGGGACCGGGCTGATCCCCAG-CTT-CGCATTATG-----CC--
** * * *
776240 TCGGCCTCTCCGACCGGTTGAGCGCTTGCACACTCATTTCATGGGTTGACTTAGGAATACGGAGT
181 T----CT-T-CGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * * * * *
776305 TCATCCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAGCGGACCAGACAGAGGCTTGCA
240 TCATCCCTAGTCTAAGCATA-GAAGTTCATTCC-AGTCTAAGATCGGATCAGACCGAGGGTTACG
* * ** * * * * * * * ** *
776370 TCAGTAGGATCGGTAGCTCACAG-GGGATACTGGGCTGATCCCTGGCTTACGCATTCTGCCCCTC
303 GCAGCAGGATCGAAAGCACGCAGAGGG-GACCGGGCAGATCCCCGACTTGTGCATTCTGCCTCTC
* * * * * * *
776434 -CAGTCGGCTAAGCACCCGCACACCCGTTTCGTGCGTTGGCTTAGGGATAGGGAGTTCATTCCAT
367 TGA-T-GGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
* * * * * *
776498 GTCTAAGCCCCAGCCAGACCGAGAGATGTGGCAGCGGGACC-GACAGTACGCAGAAGGGGACCAG
430 GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACCAG-CAGCACGCAGAAGGGGACCAG
* * * * * ***** * * * *
776562 GTCAATC-CTCGGCTTGCGTATTATGCCTCTTCGGCCGGCTCAATGTTCGAACACTCCTTTCGTG
494 GCCGATCTC-CAGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGCACCCGCACGCTCGTTTCCTG
* * * * * * *
776626 GGTTGACTTATGCATA-AGGAGTTCATTGCCAGTCTAAGATCAGATTAGATCAAGGGTTACGGTA
558 GGTTGACTTATGCATACA-GAGTTCATTCCCAGTCTAAGATCAAACTAGACCAAAGGTTGCGATA
* * * * * ** * * *
776690 GTAAGACCTACAGCATGCAG-GAGGGACCGGGCCGATCCCCGACATGC
622 GTAGGATC-ACAGCACGCAGAGGGGGATCGGGCTAATCCTCGACTTAC
* * *** * * *
776737 ACATTCTACCTCTCCAATC-GACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
1 GCATTCTGCCTCTCCGGCCAG-CTGAGCGCCCACACGCTCGATTCATGGGTTGGCTTAGGCATAC
* * * * * *
776801 GGAGTTCATTACATGTCTAAG-CCCAGGTCAGACCGAGGGTTGTGGTAGCAGGACCGACAGTGGG
65 GGAGTTCATTCCATGTCTAAGCCCCA-GTCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCGAG
** * *
776865 ATCGGTAGCACGCAGAGGGGGACCGGGCTGATCCCC-GACTT-GACATTATGCCTCTCCGACC--
129 ATCGACAGCACGTAGAGGGGGACCGGGCTGATCCCCAG-CTTCG-CATTATGCCTCTTCGACCGG
* * ** * * *
776926 ----G-G-CCTCTC-CT-G--TC---GGTTG----A-GCACCCGCACGCTCA-CTCTAAG-CATA
192 TTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA-GTTCATCCCT-AGTC-TA
* * * * * *** *
776971 CG-A-AG--TTC-ATTCCAAATCTAAGATCGGATC-GAACCGAAGGTTGTAGCAGCAGGAT-TAG
254 AGCATAGAAGTTCATTCC-AGTCTAAGATCGGATCAG-ACCGAGGGTTACGGCAGCAGGATCGA-
* * * ** * ** * * ** *
777029 CAGCACGCA-AGGGGGATCGGGCCGATCTTCGGCTTACGCATTCTTCCTCTCCGGCCGGTTGAGC
316 AAGCACGCAGA-GGGGACCGGGCAGATCCCCGACTTGTGCATTCTGCCTCT-CTGATGGCTGAGC
* * ** *
777093 ACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGC
379 GCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
** * * * * * *
777158 CAAACCGAGGGTTGTGGTAGCGGGACCGGCAGCACACAG-AGAGGGACCAAGCCGATC-CTCGGC
444 CGGACCGAGGGTTGTGGCAGTGGGACCAGCAGCACGCAGAAG-GGGACCAGGCCGATCTC-CAGC
* * * * **** * *
777221 TTGCGCATTATGCTTCTTCGACCGGCTTAGTGTGCGCACGCCCGTTTCATGGGTTGACTTATGCA
507 TTGCGCATTATGCCTCTTCGGCTGGCTCAGCACCCGCACGCTCGTTTCCTGGGTTGACTTATGCA
** * ** * * * *
777286 TAC-GAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCTG-CAGCAGGATTGACAG
572 TACAG-AGTTCATTCCCAGTCTAAGATCAAACTAGACCAAAGGTTGC-GATAGTAGGA-TCACAG
* * * * **
777349 CACGTA-AGGGGCATCGGGCTAATCCCCGGCTTGT
634 CACGCAGAGGGGGATCGGGCTAATCCTCGACTTAC
* * * * * * * * *
777383 GCAATT-TGCCTCTCCAGCCGGCTGAGTGCCCGCATGCTCGTTTCGTGAGTTAGCTTAGGCATAC
1 GC-ATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACGCTCGATTCATGGGTTGGCTTAGGCATAC
777447 GGAGTTCATTCCATGTCTAAGC
65 GGAGTTCATTCCATGTCTAAGC
777469 ATACAGAGTT
Statistics
Matches: 4218, Mismatches: 960, Indels: 704
0.72 0.16 0.12
Matches are distributed among these distances:
645 4 0.00
646 374 0.09
647 11 0.00
649 1 0.00
650 1 0.00
651 10 0.00
652 10 0.00
656 5 0.00
659 2 0.00
660 63 0.01
661 38 0.01
662 30 0.01
663 2 0.00
664 1 0.00
665 2 0.00
666 1 0.00
667 1 0.00
668 2 0.00
669 3 0.00
670 9 0.00
671 665 0.16
672 792 0.19
673 173 0.04
674 31 0.01
675 11 0.00
676 107 0.03
677 7 0.00
678 2 0.00
679 8 0.00
680 4 0.00
681 8 0.00
682 5 0.00
683 3 0.00
684 18 0.00
685 434 0.10
686 118 0.03
687 73 0.02
688 94 0.02
689 427 0.10
690 8 0.00
691 4 0.00
692 4 0.00
693 6 0.00
694 12 0.00
695 111 0.03
696 42 0.01
697 98 0.02
698 5 0.00
699 28 0.01
700 6 0.00
701 1 0.00
702 3 0.00
703 3 0.00
704 3 0.00
705 2 0.00
706 2 0.00
707 1 0.00
709 1 0.00
710 57 0.01
711 68 0.02
712 4 0.00
714 2 0.00
715 1 0.00
717 2 0.00
719 2 0.00
720 2 0.00
722 4 0.00
723 4 0.00
724 31 0.01
725 1 0.00
728 1 0.00
729 1 0.00
730 1 0.00
732 1 0.00
733 1 0.00
735 4 0.00
736 139 0.03
737 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (668 bp):
GCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACGCTCGATTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCGAGAT
CGACAGCACGTAGAGGGGGACCGGGCTGATCCCCAGCTTCGCATTATGCCTCTTCGACCGGTTGA
GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATAG
AAGTTCATTCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAGGATCGAAAGCACGCAG
AGGGGACCGGGCAGATCCCCGACTTGTGCATTCTGCCTCTCTGATGGCTGAGCGCCCGCACGCCC
ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
TGTGGCAGTGGGACCAGCAGCACGCAGAAGGGGACCAGGCCGATCTCCAGCTTGCGCATTATGCC
TCTTCGGCTGGCTCAGCACCCGCACGCTCGTTTCCTGGGTTGACTTATGCATACAGAGTTCATTC
CCAGTCTAAGATCAAACTAGACCAAAGGTTGCGATAGTAGGATCACAGCACGCAGAGGGGGATCG
GGCTAATCCTCGACTTAC
Found at i:772726 original size:158 final size:159
Alignment explanation
Indices: 772351--772728 Score: 365
Period size: 158 Copynumber: 2.4 Consensus size: 159
772341 GCCCATTTTG
* * *
772351 TGGGTTGGCTTAGGCAT-CGGACGTTCATTCCATGTCTAAGCCCCAGCCAGACCGGGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGA-GTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCGA
* *
772415 CAATGGGACCAGCAGCACGCAGAGGGGGATCGGGTCGATCCTCAGCTTGCGCATTATGCCTCTTC
65 CAATAGGACCAGCAGCACGCAGAGGGGGATCGGGTCGATCCTCAGCTTACGCATTATGCCTCTTC
* * * *
772480 GATCGGCTCAGCACCCGCACGCTCGTTTCG
130 GACCAGCTCAGCACCCGCACGCTCGATTCA
* * ** * * *
772510 TGGGTTGACTTATGCATACGGAGTTCATTTCCA-GTCTAAG-ATCGGATCAGACCAAGGGTTGCG
1 TGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGCG
* * * * * *
772573 ATAGTAGGATC-GACAGCACGCA-AGGGGGA-CTGGTTCGATCAC-CGGCTTACGCATTTTGCCT
64 ACAATAGGACCAG-CAGCACGCAGAGGGGGATC-GGGTCGATC-CTCAGCTTACGCATTATGCCT
* * * ** * * *
772634 TTTCGGCCAGCTGAGTGCTCGCGCGTTCGATTCA
126 CTTCGACCAGCTCAGCACCCGCACGCTCGATTCA
* *
772668 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
772729 TAGCAGTATG
Statistics
Matches: 172, Mismatches: 39, Indels: 17
0.75 0.17 0.07
Matches are distributed among these distances:
157 6 0.03
158 99 0.58
159 58 0.34
160 9 0.05
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCGAC
AATAGGACCAGCAGCACGCAGAGGGGGATCGGGTCGATCCTCAGCTTACGCATTATGCCTCTTCG
ACCAGCTCAGCACCCGCACGCTCGATTCA
Found at i:772901 original size:26 final size:26
Alignment explanation
Indices: 772865--772917 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
772855 GTTTACTTAG
772865 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
772891 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
772917 G
1 G
772918 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:773203 original size:368 final size:368
Alignment explanation
Indices: 772664--773475 Score: 1302
Period size: 368 Copynumber: 2.2 Consensus size: 368
772654 GCGCGTTCGA
* *
772664 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTG
1 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
* * * * * *
772729 TAGCAGTATGACCAGCAGCGGGATCGACAGCATGTCGTGGGGGACCAGGCTGATCCCTGACCTTC
66 TGGCAGTAGGACCAGCAGCGGGATCGACAGCATGCCGAGAGGGACCAGGCTGATCCCCGACCTTC
* ** * *
772794 GCATTATGCCTCTCTGGTCAGCCTCTCCTGTCGGTTGAGCGCTCGCACGCTCGTTTCGTGGGTTT
131 GCATTATGCCTCTCCGACCAGCCTCTCCTGTCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTT
* *
772859 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGA
196 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* * *
772924 TCAGACTGAGGGTTGTGGCAGCAGGATGGGTAGCACGCAGGGGGGATTGGGCCAATCCCTAGCTT
261 TCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGATTGGGCCAATCCCTAGCTT
* * * * *
772989 GTGCATTCTACCTCTCTGATCGGCTAAGCGCCCGCACGCCCGT
326 GCGCATTCTACCTCTCCGACCGACTAAGCGCCCGCACACCCGT
*
773032 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTG
1 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
* *
773097 TGGTAGTAGGACCAGCAGTGGGATCGACAGCATGCCGAGAGGGACCAGGCTGATCCCCGA-CTTG
66 TGGCAGTAGGACCAGCAGCGGGATCGACAGCATGCCGAGAGGGACCAGGCTGATCCCCGACCTT-
*
773161 CGCATTATGCCTCTCCGACCGGCCTCTCCTGTCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTT
130 CGCATTATGCCTCTCCGACCAGCCTCTCCTGTCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTT
*
773226 TACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTAG
195 TACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAG
* *
773291 ATCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGATTGGGCCAATCCCTGGCT
260 ATCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGATTGGGCCAATCCCTAGCT
*
773356 TGCGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACACCCGT
325 TGCGCATTCTACCTCTCCGACCGACTAAGCGCCCGCACACCCGT
* *
773400 TTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCTGCCGGACCGAGGGTTG
1 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
*
773465 TGGCAGCAGGA
66 TGGCAGTAGGA
773476 TGGGCAGCAC
Statistics
Matches: 407, Mismatches: 36, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
367 3 0.01
368 404 0.99
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (368 bp):
TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
TGGCAGTAGGACCAGCAGCGGGATCGACAGCATGCCGAGAGGGACCAGGCTGATCCCCGACCTTC
GCATTATGCCTCTCCGACCAGCCTCTCCTGTCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTT
ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGA
TCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGATTGGGCCAATCCCTAGCTT
GCGCATTCTACCTCTCCGACCGACTAAGCGCCCGCACACCCGT
Found at i:773269 original size:26 final size:26
Alignment explanation
Indices: 773233--773285 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
773223 GTTTACTTAG
*
773233 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
773259 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
773285 G
1 G
773286 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:773741 original size:158 final size:157
Alignment explanation
Indices: 773259--773760 Score: 576
Period size: 158 Copynumber: 3.2 Consensus size: 157
773249 CCCAGTCTAA
* * *
773259 GCATACGGAGTTCATTCCCAATCTAAGATTAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * *
773324 GCACGCAGGGGGGATTGGGCCAATCCCTGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCC
66 GCACGCAAGGGGGA-TCGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
* ** *
773389 CGCACACCCGTTTCATGGGTTAGCTTAG
130 CGCACACTCGTTTTGTGGGTTGGCTTAG
* ** * *
773417 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCTG-CCGGACCGAGGGTTGTGGCAGCAGGATGGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * * * *
773480 CAGCACGCAGAGGGGGATCGGACCGATCCCTGGCTTACGTATTATGCCTCTCCTGCTGGCTCAGT
64 CAGCACGCA-AGGGGGATCGG-CCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGC
* ** * * *
773545 GCCTGCATTCTCATTTTGTAGGTTGACTTAG
127 GCCCGCACACTCGTTTTGTGGGTTGGCTTAG
* * * ** *
773576 GCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAATAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
*
773641 GCACGCAAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCC
66 GCACGCAAGGGGGATCG-GCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
*
773706 CGCACGCTCGTTTTGTGGGTTGGCTTAG
130 CGCACACTCGTTTTGTGGGTTGGCTTAG
*
773734 GCATACGGAGTTCATTCCAAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
773761 CATACGAAGT
Statistics
Matches: 278, Mismatches: 59, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 157 0.56
159 115 0.41
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAAGGGGGATCGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCC
GCACACTCGTTTTGTGGGTTGGCTTAG
Found at i:773771 original size:26 final size:26
Alignment explanation
Indices: 773734--773784 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
773724 GTTGGCTTAG
*
773734 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
773760 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCAAGTCTA
773785 CGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:773902 original size:185 final size:184
Alignment explanation
Indices: 773579--773946 Score: 524
Period size: 185 Copynumber: 2.0 Consensus size: 184
773569 GACTTAGGCG
* * * * *
773579 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAATAGGATCGACAGCA
1 TACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAACAGGACCGACAGCA
* * *
773644 CGCAAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGC
66 CGCAAGGGGGATCGAGCCGATCCCTGGCTTACGCATTCTACCTCTCCGACCAACTGAGCGCCCGC
*
773709 ACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCA
131 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCA
* * *
773763 TACGAAGTTCATTCCCAGTCTACGATCAGACCGGACCGAGGGTTACAGCAACAGGACC-AGCAGT
1 TACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAACAGGACCGA-CAGC
* * ***
773827 ACGTAAGGAGGGATCGAGCCGATCCCCT-GCTTACGCATTCTACCTCTTCGACTGGCTGAGCGCC
65 ACGCAAGG-GGGATCGAGCCGAT-CCCTGGCTTACGCATTCTACCTCTCCGACCAACTGAGCGCC
* *
773891 CGCAGGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGC
773947 CCCAGTTGGA
Statistics
Matches: 162, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
183 1 0.01
184 61 0.38
185 96 0.59
186 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
TACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAACAGGACCGACAGCA
CGCAAGGGGGATCGAGCCGATCCCTGGCTTACGCATTCTACCTCTCCGACCAACTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCA
Found at i:774631 original size:26 final size:26
Alignment explanation
Indices: 774579--774631 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
774569 GTTGGCTTAG
* *
774579 GCATACGGATTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATCTCTAA
*
774605 GCATACGGAGTTCATTCCATCTTTAA
1 GCATACGGAGTTCATTCCATCTCTAA
774631 G
1 G
774632 ACTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATCTCTAA
Found at i:774970 original size:26 final size:26
Alignment explanation
Indices: 774934--774986 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
774924 GTTGACTTAG
*
774934 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
774960 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
774986 G
1 G
774987 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:775492 original size:158 final size:159
Alignment explanation
Indices: 775079--775492 Score: 420
Period size: 158 Copynumber: 2.6 Consensus size: 159
775069 TCTCCAGGCG
* * * * *
775079 GCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTGATTCCATGTCTATG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
** * * * * *
775144 CCCTAGTCGGACTGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAAGGGGACCAGACCGATCT
66 CCCTAGTCGGACCAAGGGTTGTGGTAGCAGGATCGACAACACGCAGAAGGGGACCAAACCGATCC
* * * *
775209 TCGACTTACGCATTATGCCTTTTCGGTCA
131 TCGACTTACGCATTATACCTCTCCGGCCA
* ** * ** * *
775238 GCTTAGCGATCGCACACTCGTTTCGTGGGTTGATTTATGCATACAGAGTTCATTCCCA-GTCTAA
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
** * * * ** * * * *
775302 GATCGAATCGGATCGAA-GGTTACGATAGCAGGATTGGCAACACGCAG-GGGGGACCAAACCGAT
65 GCCCTAGTCGGA-CCAAGGGTTGTGGTAGCAGGATCGACAACACGCAGAAGGGGACCAAACCGAT
** *
775365 CCTCGACTTGTGCATTCTACCTCTCCGGCCA
129 CCTCGACTTACGCATTATACCTCTCCGGCCA
*
775396 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* *
775461 CCCTAGCCGGACCAAGGGTTGTGGTAACAGGA
66 CCCTAGTCGGACCAAGGGTTGTGGTAGCAGGA
775493 CCGATAGTGG
Statistics
Matches: 195, Mismatches: 56, Indels: 9
0.75 0.22 0.03
Matches are distributed among these distances:
157 6 0.03
158 107 0.55
159 77 0.39
160 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (159 bp):
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCTAGTCGGACCAAGGGTTGTGGTAGCAGGATCGACAACACGCAGAAGGGGACCAAACCGATCC
TCGACTTACGCATTATACCTCTCCGGCCA
Found at i:775995 original size:159 final size:158
Alignment explanation
Indices: 775692--776063 Score: 351
Period size: 159 Copynumber: 2.3 Consensus size: 158
775682 TAGCAAGATT
* * * * * * * * ** *
775692 GACAGCACGCAGGGGGGA-TCGGGCTGATCCCCGGCTTGCGTATTCTACCTCTCCGATCGACTGA
1 GACAGCACGTAGGGGGGACT-GGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGTTCA
* * *
775756 GCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATCGGGAGTTCATTCCATGTCTAAGCCCCA
65 ACGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATCGGGAGTTCATTCCATGTCTAAGCACCA
* * * *
775821 GCCGGACCGAGGGTTGTGGA-AGCCGGACC
130 GCCGAACCGAAGGTTG-CGACAGCAGGACC
* * *
775850 -AGCAGCACGTAGAGGGGGATTGGGCCGATCCTCAGCTTGCGGATTATGCCTCTTCGGTCGGTTC
1 GA-CAGCACGTAG-GGGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGTTC
* * * *
775914 AACGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATAC-GGAGTTCATTCCCA-GTCTAAG-A
64 AACGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCAT-CGGGAGTTCATT-CCATGTCTAAGCA
* * * *
775976 TCAGACCGAATCGAAGGTTGCGACAGTAGGATC
127 CCAG-CCGAACCGAAGGTTGCGACAGCAGGACC
* * *
776009 GACAGCACGTAGGGGGGACTGGTCCGATCCCCAGCTTTCGCATTCTGCCTCTTCG
1 GACAGCACGTAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCG
776064 ACCAGCTGAG
Statistics
Matches: 173, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.01
158 51 0.29
159 115 0.66
160 6 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GACAGCACGTAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGTTCAA
CGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATCGGGAGTTCATTCCATGTCTAAGCACCAG
CCGAACCGAAGGTTGCGACAGCAGGACC
Found at i:776326 original size:26 final size:26
Alignment explanation
Indices: 776296--776346 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
776286 TGACTTAGGA
776296 ATACGGAGTTCATCCCTAGTCTAAGC
1 ATACGGAGTTCATCCCTAGTCTAAGC
*
776322 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATCCCTAGTCTAAG
776347 AGCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATCCCTAGTCTAAGC
Found at i:777171 original size:158 final size:156
Alignment explanation
Indices: 776966--777475 Score: 418
Period size: 158 Copynumber: 3.2 Consensus size: 156
776956 CTCACTCTAA
* ** * * * *
776966 GCATACGAAGTTCATTCCAAATCTAAG-ATCGGATCGAACCGAAGGTTGTAGCAGCAGGATTAGC
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAAACCGAGGGTTGT-GCAGCAGGATT-GC
* * * **
777030 AGCACGCAAGGGGGATCGGGCCGATCTTCGGCTTACGCATTCTTCCTCTCCGGCCGGTTGAGCAC
64 AGCACGCAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATT-TGCCTCTCCGGCCGGTTGAGTGC
777095 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * * * **
777124 GCATAGGGAGTTCATTCCATGTCTAAGCCTTAG-CCAAACCGAGGGTTGTGGTAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAAACCGAGGGTTGT-GCAGCAGGA-TTGC
* * * ** * * *
777188 AGCACACAGAGAGGGACCAAGCCGATCCTCGGCTTGCGCATTATGCTTCTTCGACCGGCTT-AGT
64 AGCACGCA-AGGGGGATCGGGCCGATCCTCGGCTTGCGCATT-TGCCTCTCCGGCCGG-TTGAGT
** * * *
777252 GTGCGCACGCCCGTTTCATGGGTTGACTTAT
126 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * *** *
777283 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGACTGGACTGAGGGTTGCTGCAGCAGGATTGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGACCAAACCGAGGGTTG-TGCAGCAGGATTG-
* * ** * * * *
777346 CAGCACGTAAGGGGCATCGGGCTAATCCCCGGCTTGTGCAATTTGCCTCTCCAGCCGGCTGAGTG
63 CAGCACGCAAGGGGGATCGGGCCGATCCTCGGCTTGCGC-ATTTGCCTCTCCGGCCGGTTGAGTG
* * * *
777411 CCCGCATGCTCGTTTCGTGAGTTAGCTTAG
127 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
777441 GCATACGGAGTTCATTCCATGTCTAAGCATACAGA
1 GCATACGGAGTTCATTCCATGTCTAAGCAT-CAGA
777476 GTTCATTCCC
Statistics
Matches: 265, Mismatches: 74, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
157 4 0.02
158 134 0.51
159 118 0.45
160 9 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAAACCGAGGGTTGTGCAGCAGGATTGCAG
CACGCAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTTGCCTCTCCGGCCGGTTGAGTGCCCG
CACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:777427 original size:317 final size:313
Alignment explanation
Indices: 776392--777468 Score: 845
Period size: 317 Copynumber: 3.4 Consensus size: 313
776382 GTAGCTCACA
* * * * * * * ** *
776392 GGGGATACTGGGCTGATCCCTGGCTTACGC-ATTCTGCCCCTCCAGTCGGCTAAGCACCCGCACA
1 GGGGAT-C-GGGCCGATCCCCGGCTTATGCAATTCTACCTCTCCAGCCGGCTGAGTGCCCGCACG
* * * *
776456 CCCGTTTCGTGCGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
64 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGCCAGACCGAG
* * * * * * * *
776521 AGATGTGGCAGCGGGACCGACAGTACGCAGA-AGGGGACCAGGTCAATCCTCGGCTTGCGTATTA
128 GGTTGTGGTAGCGGGACCGGCAGCACGCAGAGA-GGGACCAGGCCGATCCTCGGCTTGCGCATTA
* * * * * * * *
776585 TGCCTCTTCGGCCGGCTCAATGTTCGAACACTCC-TTTCGTGGGTTGACTTATGCATAAGGAGTT
192 TGCCTCTTCGACCGGCTTAGTGTGCG--CACCCCGTTTCATGGGTTGACTTATGCATACGAAGTT
* * * * * * * * * * * *
776649 CATTGCCAGTCTAAGATCAGATTAGA-TCAAGGGTTACGGTAGTAAGACCTACAGCATGCAG
255 CATTCCCAGTCTAAGATCGGA-TGGACT-GAGGGTTGCTGCAGCAGGA-TTACAGCACGAAG
* * ** *
776710 GAGGGACCGGGCCGATCCCCGAC--ATGCACATTCTACCTCTCCAATCGACTGAGTGCCCGCACG
1 G-GGGATCGGGCCGATCCCCGGCTTATGCA-ATTCTACCTCTCCAGCCGGCTGAGTGCCCGCACG
* * *
776773 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCAGGTCAGACCGAG
64 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA-GCCAGACCGAG
* * * * * *
776838 GGTTGTGGTAGCAGGACCGACAGTGGGATCGGTAGCACGCAGAGGGGGACCGGGCTGATCCCCGA
128 GGTTGTGGTAGC-GG---GAC--------CGGCAGCACGCAGAGAGGGACCAGGCCGATCCTCGG
* * * * * * *
776903 CTTG-ACATTATGCCTCTCCGACCGGCCTCTCCTGTCGGTTGAGCA-CCCG---CA--CGCTCAC
181 CTTGCGCATTATGCCTCTTCGACCGG-CT-T--AGT--G-TGCGCACCCCGTTTCATGGGTTGAC
* * * * * *
776961 TCTAAGCATACGAAGTTCATTCCAAATCTAAGATCGGATCGAACCGAAGGTTG-TAGCAGCAGGA
239 T-TATGCATACGAAGTTCATTCCCAGTCTAAGATCGGAT-GGACTGAGGGTTGCT-GCAGCAGGA
777025 TTAGCAGCACGCAAG
301 TTA-CAGCACG-AAG
** * * * * ** *
777040 GGGGATCGGGCCGATCTTCGGCTTACGC-ATTCTTCCTCTCCGGCCGGTTGAGCACCCGCACGCC
1 GGGGATCGGGCCGATCCCCGGCTTATGCAATTCTACCTCTCCAGCCGGCTGAGTGCCCGCACGCT
* * *
777104 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGCCAAACCGAGGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC-CAGCCAGACCGAGGG
* *
777169 TTGTGGTAGCGGGACCGGCAGCACACAGAGAGGGACCAAGCCGATCCTCGGCTTGCGCATTATGC
130 TTGTGGTAGCGGGACCGGCAGCACGCAGAGAGGGACCAGGCCGATCCTCGGCTTGCGCATTATGC
*
777234 TTCTTCGACCGGCTTAGTGTGCGCACGCCCGTTTCATGGGTTGACTTATGCATACGAAGTTCATT
195 CTCTTCGACCGGCTTAGTGTGCGCAC-CCCGTTTCATGGGTTGACTTATGCATACGAAGTTCATT
777299 CCCAGTCTAAGATCGGACTGGACTGAGGGTTGCTGCAGCAGGATTGACAGCACGTAAG
259 CCCAGTCTAAGATCGGA-TGGACTGAGGGTTGCTGCAGCAGGATT-ACAGCACG-AAG
* ** * * *
777357 GGGCATCGGGCTAATCCCCGGCTTGTGCAATT-TGCCTCTCCAGCCGGCTGAGTGCCCGCATGCT
1 GGGGATCGGGCCGATCCCCGGCTTATGCAATTCTACCTCTCCAGCCGGCTGAGTGCCCGCACGCT
* *
777421 CGTTTCGTGAGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
777469 ATACAGAGTT
Statistics
Matches: 586, Mismatches: 127, Indels: 93
0.73 0.16 0.12
Matches are distributed among these distances:
311 5 0.01
312 1 0.00
313 4 0.01
314 2 0.00
315 3 0.01
316 7 0.01
317 289 0.49
318 33 0.06
319 4 0.01
321 3 0.01
325 3 0.01
328 27 0.05
329 189 0.32
330 5 0.01
331 3 0.01
332 3 0.01
333 2 0.00
334 1 0.00
335 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (313 bp):
GGGGATCGGGCCGATCCCCGGCTTATGCAATTCTACCTCTCCAGCCGGCTGAGTGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCCAGACCGAGGGT
TGTGGTAGCGGGACCGGCAGCACGCAGAGAGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCC
TCTTCGACCGGCTTAGTGTGCGCACCCCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCC
CAGTCTAAGATCGGATGGACTGAGGGTTGCTGCAGCAGGATTACAGCACGAAG
Found at i:777470 original size:26 final size:26
Alignment explanation
Indices: 777441--777493 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
777431 GTTAGCTTAG
* *
777441 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAGGTCTAA
*
777467 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCAGGTCTAA
777493 G
1 G
777494 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAGGTCTAA
Found at i:778090 original size:26 final size:26
Alignment explanation
Indices: 778061--778113 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
778051 GTTGACTTAG
778061 GCATACAAAGTTC-ATCCCCAGTCTAA
1 GCATACAAAGTTCAAT-CCCAGTCTAA
**
778087 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAAAGTTCAATCCCAGTCTAA
778113 G
1 G
778114 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAAAGTTCAATCCCAGTCTAA
Found at i:778612 original size:26 final size:26
Alignment explanation
Indices: 778562--778614 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
778552 GTTGGCTTAG
*
778562 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
778588 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
778614 G
1 G
778615 ATAGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:778964 original size:158 final size:156
Alignment explanation
Indices: 778650--779102 Score: 563
Period size: 158 Copynumber: 2.9 Consensus size: 156
778640 AGTAGGACCA
* * *
778650 GCAGCAGGGTCGACAGCACGAAGGGGGGGA-CTAGACCGAT-CCTCGGCTTACGCATTCTGCCTC
1 GCAGCAGGATCGACAGCACGCA-GGGGGGACCTAG-CCGATCCCT-GGCTTATGCATTCTGCCTC
* * *
778713 TTCGGCCGACTGAGCACTCGTACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
63 TCCGGTCGACTGAGCCCTC--ACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * *
778778 TGTCTAAGGCCGAGCCGGACCGAGGGTTGTG
126 TGTCTAAGCCCAAGCCAGACCGAGGGTTGCG
* * *
778809 GCAGCAGGATCGACAGTACGCAGGAGGGACCTAGCCGATCCCTGGCTTATGCATTCTACCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCTAGCCGATCCCTGGCTTATGCATTCTGCCTCTCC
*
778874 GGTCGACTGAGCGCCTACACGCTCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
66 GGTCGACTGAGC-CCT-CACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
778939 CTAAGCCCAAGCCAGACCGAGGGTTGCG
129 CTAAGCCCAAGCCAGACCGAGGGTTGCG
* * *
778967 GCAGCAGGATCGATAGCACGCAGGGGGGATCC-AGCCGATCCCTGGCTTGTGCATTTTGCCTCTC
1 GCAGCAGGATCGACAGCACGCAGGGGGGA-CCTAGCCGATCCCTGGCTTATGCATTCTGCCTCTC
* * ** * **
779031 CAGTC-AGCTGAGATCCCGCACGCTCATTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCTGT
65 CGGTCGA-CTGAG--CCCTCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
779095 GTCTAAGC
127 GTCTAAGC
779103 ATACGGAGTT
Statistics
Matches: 258, Mismatches: 28, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
157 1 0.00
158 223 0.86
159 32 0.12
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCTAGCCGATCCCTGGCTTATGCATTCTGCCTCTCC
GGTCGACTGAGCCCTCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCAAGCCAGACCGAGGGTTGCG
Found at i:778984 original size:513 final size:510
Alignment explanation
Indices: 778004--779338 Score: 1355
Period size: 513 Copynumber: 2.6 Consensus size: 510
777994 CCCAGCTTAC
* * * * * * * * *
778004 GCATCCTGCCTCTCTGGTCGCTGAACGCCCGCATGCTCGTTTTGTTGGTTGACTTAGGCATACAA
1 GCATTCTGCCTCTCCGATCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGA
* * * *
778069 AGTTCATCCCCA-GTCTAAGCATACGGAGTTCAATCCCAGTCTAAGATCGGATCGGATCGAGGGT
66 AGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGATCGAGGGT
*
778133 TAT-G-GTA-G--CAG--G-A--TCGACAGCACGTAA-GAGGGA-TCGGGCCGATCCCCGGCTTA
130 TATGGCGTAGGACCAGCAGCAGGTCGACAGCACG-AAGGAGGGACT-GGACCGATCCCCGGCTTA
** * ** * *
778186 CGCATTCAACCTCTCCAGTCGACTGAGCGCCCGCACGC-CCGTTTGATTGCTTGGCTTAGGCATA
193 CGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTTG-TGGGTTGGCTTAGGCATA
* * * * * * * * *
778250 GGGAGTTCATTCCAAGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGGGACCGGCAGCACG
257 CGGAGTTCATTCCATGTCTAAGGCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * * * * * * * *
778315 CAGAGGGGGACCGAGCCGATCCCTGACTTGCGTATTATGCCTCTCCTGCAGGCTTAGGGCCCGCA
322 CAGAGAGGGACCGAGCCGATCCCTGACTTACGCATTATACCTCTCCGGCAGACTGAGCGCCCACA
* * * * *
778380 TGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCG
387 CGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACCAGACCG
* * * ** *
778445 TGGGTTGCAACAGCAAGATCGATAGCATGTAGGGGGGATCGGGCCGGTCCCCGACATAT
452 AGGGTTGCAACAGCAAGATCGATAGCACGCAGGGGGGATCCAGCCGATCCCCGACATAT
778504 GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGATC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* *
778569 AAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATAGGACCGAATCGAGGGT
65 AAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGATCGAGGGT
* * * *
778634 TGTGGCAGTAGGACCAGCAGCAGGGTCGACAGCACGAAGGGGGGGACTAGACCGATCCTCGGCTT
130 TATGGC-GTAGGACCAGCAGCA-GGTCGACAGCACGAA-GGAGGGACTGGACCGATCCCCGGCTT
* * * * *
778699 ACGCATTCTGCCTCTTCGGCCGACTGAGCACTCGTACGCTCATTTTGTGGGTTGGCTTAGGCATA
192 ACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATA
* *
778764 CGGAGTTCATTCCATGTCTAAGGCCGAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGTACG
257 CGGAGTTCATTCCATGTCTAAGGCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * * * *
778829 CAG-GAGGGACCTAGCCGATCCCTGGCTTATGCATTCTACCTCTCCGGTC-GACTGAGCGCCTAC
322 CAGAGAGGGACCGAGCCGATCCCTGACTTACGCATTATACCTCTCCGG-CAGACTGAGCGCCCAC
* * * *
778892 ACGCTCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCAAGCCAGA
386 ACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCCAA-CCAGA
** * * * * *
778955 CCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGATCCAGCCGATCCCTGGCTTGT
449 CCGAGGGTTGCAACAGCAAGATCGATAGCACGCAGGGGGGATCCAGCCGATCCCCGACATAT
* ** * * *
779017 GCATTTTGCCTCTCC-AGTCAGCTGAGATCCCGCACGCTCATTTCATGGGTTGGCTCAGGCATAC
1 GCATTCTGCCTCTCCGA-TC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* ** * *
779081 GGAGTTCATTCTGTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACTGGACCGAGG
64 GAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGATCGAGG
* * * * * * *
779145 GTTACGGCGACAGGACCAGCAGCAGGATCGACAGCA-TATAGAGAAGAACCGGACTGATCCCCGG
128 GTTATGGCG-TAGGACCAGCAGCAGG-TCGACAGCACGA-AG-GAGGGACTGGACCGATCCCCGG
** * ** * *
779209 CTTGTGTATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGC
189 CTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGC
* * * * * *
779274 ATACGGAGTTCATTCCATGTC-GAGGCCCCAACCGGACCAAAGGTTGTGGCAGAAAGATCGACAG
254 ATACGGAGTTCATTCCATGTCTAAGG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
779338 C
318 C
779339 GGGATCGACA
Statistics
Matches: 683, Mismatches: 124, Indels: 43
0.80 0.15 0.05
Matches are distributed among these distances:
500 19 0.03
501 96 0.14
502 1 0.00
504 3 0.00
505 1 0.00
507 3 0.00
509 1 0.00
510 1 0.00
512 17 0.02
513 410 0.60
514 125 0.18
515 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (510 bp):
GCATTCTGCCTCTCCGATCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGA
AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGATCGAGGGTT
ATGGCGTAGGACCAGCAGCAGGTCGACAGCACGAAGGAGGGACTGGACCGATCCCCGGCTTACGC
ATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGGCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGA
GAGGGACCGAGCCGATCCCTGACTTACGCATTATACCTCTCCGGCAGACTGAGCGCCCACACGCT
CATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACCAGACCGAGGG
TTGCAACAGCAAGATCGATAGCACGCAGGGGGGATCCAGCCGATCCCCGACATAT
Found at i:779124 original size:26 final size:26
Alignment explanation
Indices: 779075--779127 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
779065 GTTGGCTCAG
***
779075 GCATACGGAGTTCATTCTGTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
779101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
779127 G
1 G
779128 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:779485 original size:26 final size:26
Alignment explanation
Indices: 779455--779507 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
779445 GTTGACTTAG
*
779455 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTAATTCCC-AGTCTAA
779481 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
779507 G
1 G
779508 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:780489 original size:317 final size:318
Alignment explanation
Indices: 779481--780667 Score: 1305
Period size: 317 Copynumber: 3.7 Consensus size: 318
779471 CCTAGTCTAA
* * * * **
779481 GCATACGGAGTTAATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
779546 GCACGCAAGGGGGACCGGGCC-AGTCCCCAACTTTCGCATTCTGCCTCTCCGGCTGGCT-AAGCG
66 GCACGCAAGAGGGACCGGGCCGA-TCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGATGAA-CG
* *
779609 CCCGCACTCCCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCACAGTC
129 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* ** * * *
779673 G-GATCGAGGGTTATGGCAGCGGGATTGGCAGCACGCAGAGAGGGACCGGGCTGATCCCCGGCTT
194 GAGACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGCTGATCCTCGACTT
* * * * *
779737 GCGCATTATGCCTCTTAGACCGGTTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTCT
259 GCGCATTATGCCTCTTCGACTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTCT
*
779797 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* ** * *
779862 GCACGCAAGAGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGATGAACTCT
66 GCACGCAAGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGATGAACGCC
* * * *
779927 CGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCA
131 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA
* * * *
779991 GACCGAGGGTTATGGCAGCGGGACTGGCAGCACGCAGAGAGGGACCGGGTTGGTCCTCGACTTGC
196 GACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGCTGATCCTCGACTTGC
* * * *
780056 GCATTATGCCTCTTCGA-TCGGCTCAACGCTCGTACGCTCATTTCGTGGGTTGACTTCT
261 GCATTATGCCTCTTCGACT-GGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTCT
* * ** *
780114 GCATACGAAGTTCATTCCCAGTCTAACATCGGACCAAACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * *
780179 GCACGCAAGAGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTTGGCCGGATGAACGCT
66 GCACGCAAGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGATGAACGCC
* * *
780244 CGCATGCCCGTTTTGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA
131 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA
* * * * * * * *
780309 -ACCAAGGGTTGTGGCAACGGGACCGACAGCATGCAGAGGGGGACCAGGCCGATCCTCGACTTAC
196 GACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGCTGATCCTCGACTTGC
* * * * * * *
780373 GTATTACGCGTCTCCGACTGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTAACTT-A
261 GCATTATGCCTCTTCGACTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTCT
* * * * *
780430 GTCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGATAGTAGGACCAGC
1 G-CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATC-G-
* * ** * * *
780495 AGCAGGATCGGCAACACGTAGGGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTGACTCTTTGG
63 A-CAGCA-C-GC-A-A-G-A---GGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGG
* * * ** * * *
780560 TC-GACTGAGCGCCCGTACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTC
118 CCGGA-TGAACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * *
780624 TAAGCCCCAATC-AGACCGAGGGTTGTGGCAGCAGGACCAACAGC
182 TAAGCCCCAGTCGAGACCGAGGGTTATGGCAGCGGGACCGACAGC
780668 GAAATAGGCA
Statistics
Matches: 739, Mismatches: 110, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
316 140 0.19
317 457 0.62
318 4 0.01
319 1 0.00
320 4 0.01
321 1 0.00
322 2 0.00
323 1 0.00
324 1 0.00
325 1 0.00
326 1 0.00
328 3 0.00
329 123 0.17
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (318 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAAGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGATGAACGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA
GACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGCTGATCCTCGACTTGC
GCATTATGCCTCTTCGACTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTCT
Found at i:780498 original size:159 final size:158
Alignment explanation
Indices: 779481--780480 Score: 826
Period size: 158 Copynumber: 6.3 Consensus size: 158
779471 CCTAGTCTAA
* * * * *
779481 GCATACGGAGTTAATTCCCAGTCTAAGATC-GAACTGGACTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
779545 AGCACGCAAGGGGGACCGGGCC-AGTCCCCAACTTTCGCATTCTGCCTCTCCGGCTGGCT-AAGC
65 AGCACGCAAGAGGGACCGGGCCGA-TCCCCGACTTGCGCATTCTGCCTCTTCGACTGGCTCAA-C
* *
779608 GCCCGCACTCCCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * *
779639 GCATA-GGAGTTCATT-CCATGTCTAAGCCA-CAG-TCGGATCGAGGGTTATGGCAGCGGGATTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG--ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * * * *
779700 GCAGCACGCAGAGAGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTAGACCGGTTCAG
63 ACAGCACGCA-AGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACTGGCTCAA
* * * **
779765 CACCCGCACGCTCGTTTCATGGGTTGACTTCT
127 CGCCCGCACGCCCGTTTCGTGGGTTGACTTAG
* *
779797 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCT-ACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG-TGGCAGCAGGATCGAC
* * * *
779861 AGCACGCAAGAGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGA-TCGGATGAACT
65 AGCACGCAAGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACT-GGCTCAACG
* * * *
779925 CTCGCACACCCGTTTTGTGGGTTGGCTTAG
129 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
* ** * * *
779955 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCAGACCGAGGGTTATGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGTGGCAGCAGGATC-G
* ** * * *
780017 GCAGCACGCAGAGAGGGACCGGGTTGGTCCTCGACTTGCGCATTATGCCTCTTCGA-TCGGCTCA
63 ACAGCACGCA-AGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACT-GGCTCA
* * * * **
780081 ACGCTCGTACGCTCATTTCGTGGGTTGACTTCT
126 ACGCCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * ** * * *
780114 GCATACGAAGTTCATTCCCAGTCTAACATCGGACCAAACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * *
780179 GCACGCAAGAGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTTGGCCGGATGAACGCT
66 GCACGCAAGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACTGGCTCAACGCC
* * * *
780244 CGCATGCCCGTTTTGTGGATTGGCTTAG
131 CGCACGCCCGTTTCGTGGGTTGACTTAG
* ** * * * * * *
780272 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGAACCAAGGGTTGTGGCAACGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * *
780335 CAGCATGCAGAGGGGGACCAGGCCGATCCTCGACTTACGTATTAC-GCGTCTCCGACTGGCTCAG
64 CAGCACGCA-AGAGGGACCGGGCCGATCCCCGACTTGCGCATT-CTGCCTCTTCGACTGGCTCAA
* * *
780399 CGCCCGCACGCTCGTTTTGTGGGTTAACTTAG
127 CGCCCGCACGCCCGTTTCGTGGGTTGACTTAG
*
780431 TCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTG
780481 ATAGTAGGAC
Statistics
Matches: 654, Mismatches: 160, Indels: 55
0.75 0.18 0.06
Matches are distributed among these distances:
156 3 0.00
157 54 0.08
158 313 0.48
159 272 0.42
160 12 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAAGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACTGGCTCAACGCC
CGCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:781173 original size:159 final size:158
Alignment explanation
Indices: 780818--781174 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 158
780808 TAAGCATACA
* * *
780818 GAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAACACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGACCGACAACACATA
* *** * * * * **
780883 GGGGGGATCGGGCTGATCCCCGACTTGCACATTCTGCCTCTCTAGTTGGCTGAGTGCCCGCACGC
66 GGGGGGATCGGGCCGATCCCCGACCAACACATTATGCCTCTCGAGTCGGCTCAACGCCCGCACGC
*
780948 CCGTTTCATGGGTTGGCTTAGGCATAGG
131 CCGTTTCATGGGTTGACTTAGGCATAGG
* * * **
780976 GAGTTCATT-CCATGTCTAAGCCA-CAG-CCAGACCGAGGGTTGTGGCAGC-GAGACCGGCTGCA
1 GAGTTCATTCCCA-GTCTAAG--ATCAGACCGGACCGAGGGTTGCGGCAGCAG-GACCGACAACA
* *
781037 CATAGAGGGGGATCGGGCCGATCCCCGGCCAACGCATTATGCCTCTTCGA-TCGGCTCAACGCCC
62 CATAG-GGGGGATCGGGCCGATCCCCGACCAACACATTATGCCTC-TCGAGTCGGCTCAACGCCC
** * * *
781101 GCACGGTCGTTTCGTGGGTTGACTTATGCATATG
125 GCACGCCCGTTTCATGGGTTGACTTAGGCATAGG
**
781135 GAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTT
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
781175 ACAATAGCAG
Statistics
Matches: 161, Mismatches: 29, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
157 5 0.03
158 50 0.31
159 99 0.61
160 7 0.04
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGACCGACAACACATA
GGGGGGATCGGGCCGATCCCCGACCAACACATTATGCCTCTCGAGTCGGCTCAACGCCCGCACGC
CCGTTTCATGGGTTGACTTAGGCATAGG
Found at i:781316 original size:26 final size:26
Alignment explanation
Indices: 781286--781337 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
781276 GTTGGCTTAG
781286 GCATACGGAATTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
*
781312 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
781338 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:782045 original size:26 final size:26
Alignment explanation
Indices: 782009--782060 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
781999 GTTGACTTAC
*
782009 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
782035 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
782061 CATCGGATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:782535 original size:158 final size:159
Alignment explanation
Indices: 782071--782536 Score: 415
Period size: 158 Copynumber: 2.9 Consensus size: 159
782061 CATCGGATCC
* * ** * * *
782071 GACCAAGGGTTGCAGCAGTAGGATCGGCAGCATGCAGCAGA--GACCAAGCCGATCCCCGGCTTG
1 GACCGAGGGTTGCAGCAGCAGGATCAACAGCACGCAG-AGAGGGATCGAGCCGATCCCCGGCTTG
* * * * * *
782134 CGCATTCTGCCTCTCCGGCCGATTAAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGGATAG
65 CGCATTCTGCCTCTCCAGCCGGTTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
782199 GGAGTTCATTCCATGTCTAAGCCCTAGTCG
130 GGAGTTCATTCCATGTCTAAGACCTAGTCG
** * ** * * *
782229 GACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGAGGGATCGAGTCGATCCCTGGCTTGT
1 GACCGAGGGTTGCAGCAGCAGGATCAACAGCACGCAGAGAGGGATCGAGCCGATCCCCGGCTTGC
* * * * * * * *
782294 GCATTATGCCTCT-CTGACCGGCTCAGTGCCCGCACGCTTGTTTCGTGGTTTGACATAGGCATAC
66 GCATTCTGCCTCTCCAG-CCGGTTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * *
782358 AGAGTTCATTCCCA-ATCTAAGATC-AGATGG
130 GGAGTTCATT-CCATGTCTAAGACCTAG-TCG
* * * * * * *
782388 GATCGAGGGTTGCAGTAGCAGGATCAATAGCACGTAG-GAGGGACTTG-GCCGATCCCCGACTTA
1 GACCGAGGGTTGCAGCAGCAGGATCAACAGCACGCAGAGAGGGA-TCGAGCCGATCCCCGGCTTG
* * * * * *
782451 CGCATTCTACCTCTCCAGTCGGTTGAGTGCCCGCATGCTCATTTCGTGGGTTGGTTTAGGCATAC
65 CGCATTCTGCCTCTCCAGCCGGTTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
782516 GGAGTTCATTCCATGTCTAAG
130 GGAGTTCATTCCATGTCTAAG
782537 CATACGGAGT
Statistics
Matches: 241, Mismatches: 59, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 6 0.02
158 116 0.48
159 116 0.48
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GACCGAGGGTTGCAGCAGCAGGATCAACAGCACGCAGAGAGGGATCGAGCCGATCCCCGGCTTGC
GCATTCTGCCTCTCCAGCCGGTTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGACCTAGTCG
Found at i:782562 original size:26 final size:26
Alignment explanation
Indices: 782510--782562 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
782500 GTTGGTTTAG
*
782510 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
*
782536 GCATACGGAGTTTATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
782562 G
1 G
782563 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:784238 original size:26 final size:26
Alignment explanation
Indices: 784188--784240 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
784178 GTTGGCTTAG
*
784188 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
784214 GCATCCGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
784240 G
1 G
784241 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:785690 original size:21 final size:21
Alignment explanation
Indices: 785665--785707 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
785655 TACATGGGTG
785665 GCTTATGGCAACTTAAGTCCC
1 GCTTATGGCAACTTAAGTCCC
785686 GCTTATGGCAACTTAAGTCCC
1 GCTTATGGCAACTTAAGTCCC
785707 G
1 G
785708 ATCATGGCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (21 bp):
GCTTATGGCAACTTAAGTCCC
Found at i:785714 original size:21 final size:21
Alignment explanation
Indices: 785669--785715 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
785659 TGGGTGGCTT
* *
785669 ATGGCAACTTAAGTCCCGCTT
1 ATGGCAACTTAAGTCCCGATC
785690 ATGGCAACTTAAGTCCCGATC
1 ATGGCAACTTAAGTCCCGATC
785711 ATGGC
1 ATGGC
785716 CCTATACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (21 bp):
ATGGCAACTTAAGTCCCGATC
Found at i:790747 original size:26 final size:26
Alignment explanation
Indices: 790702--790754 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
790692 GTTGACTTAG
*
790702 GCATATGGACTTTATCCCCAGCCTAA
1 GCATATGGACTTCATCCCCAGCCTAA
* * *
790728 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGACTTCATCCCCAGCCTAA
790754 G
1 G
790755 ATCCGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGACTTCATCCCCAGCCTAA
Found at i:791595 original size:26 final size:26
Alignment explanation
Indices: 791565--791617 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
791555 GTTGACTTAG
*
791565 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
791591 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
791617 G
1 G
791618 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:792542 original size:317 final size:315
Alignment explanation
Indices: 791868--792604 Score: 774
Period size: 317 Copynumber: 2.3 Consensus size: 315
791858 ATAGGGACCG
* * * * *
791868 GGCCAATCCCCGGCTTGCTCATTCTGCCTCTACGACCGGTTGAGCGCCCGTACACCCGTTTCGTG
1 GGCC-ATCCCCGGCTTGCGCATTCTG-CTCTCCG-TCGGTTGAGCGCCCGCACACCCGTTTCATG
* * *
791933 GGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAG
63 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTAGTGGCAG
** * * *
791998 CGGGACCGACAGCACATAGAGAGGGATCGGGTCGATCCCCTGCTTGCATATTATGCCTCTTCGAT
128 CAAGACCGACAGCACATAGAGAGGGATCGGCTCGATCCCCTGCTTACACATTATGCCTCTTCGA-
* * * *
792063 CGGTTCAGTGCGCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
192 CGGCTCAGCGCGCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
* ** * * ** *
792128 AGATCGGACTGAACTGAGGGTTACGACAGTAGGATGGGTAGCACGCAATGGTGGACCTCA
257 AGATCAGACTGAACCAAGGGTTACGACAGCAGGATCGACAGCACG-AATGGGGGACCTCA
* * * * * ** *
792188 -TCGATCCCTGGCTTTCGCATTCTGC-CACTTTTCGGTTGAGCACCCGCACACCCGTTTCATGGG
1 GGCCATCCCCGGCTTGCGCATTCTGCTCTC-CGTCGGTTGAGCGCCCGCACACCCGTTTCAT-GG
* * * *
792251 GTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGCCGGATCGAGGGTAGTGGTAGT
64 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTAGTGGCAGC
* ** *
792316 AAGACCGACAGCACTTAGAG-GGGGCCTGAGCT-GAT-CCCTGGCTTACGCATTATGCCTC-TCT
129 AAGACCGACAGCACATAGAGAGGGATC-G-GCTCGATCCCCT-GCTTACACATTATGCCTCTTC-
* *
792377 GGCAGGCTCAGCGC-CTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAG
190 GAC-GGCTCAGCGCGC-GCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAG
* ** * *
792441 TCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACG-TTGGGGGA-CT-A
253 TCTAAGATCAGACTGAACCAAGGGTTACGACAGCAGGATCGACAGCACGAATGGGGGACCTCA
* * * *
792501 GGCCAGTCCCCGACTTGCGCATTCTGCTTCTCCAGTCGGTTGAGCGCCCGCACGCTCATTTCATG
1 GGCCA-TCCCCGGCTTGCGCATTCTGC-TCTCC-GTCGGTTGAGCGCCCGCACACCCGTTTCATG
* *
792566 GGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGC
63 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
792605 ATACGGAGTT
Statistics
Matches: 341, Mismatches: 63, Indels: 30
0.79 0.15 0.07
Matches are distributed among these distances:
313 1 0.00
314 4 0.01
315 24 0.07
316 75 0.22
317 216 0.63
318 20 0.06
319 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (315 bp):
GGCCATCCCCGGCTTGCGCATTCTGCTCTCCGTCGGTTGAGCGCCCGCACACCCGTTTCATGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTAGTGGCAGCAA
GACCGACAGCACATAGAGAGGGATCGGCTCGATCCCCTGCTTACACATTATGCCTCTTCGACGGC
TCAGCGCGCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
CAGACTGAACCAAGGGTTACGACAGCAGGATCGACAGCACGAATGGGGGACCTCA
Found at i:792986 original size:26 final size:26
Alignment explanation
Indices: 792957--793009 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
792947 GTTGACTTAG
*
792957 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
792983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
793009 G
1 G
793010 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:793335 original size:26 final size:26
Alignment explanation
Indices: 793299--793351 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
793289 GTTGGCTTAG
793299 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
793325 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
793351 G
1 G
793352 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:794049 original size:26 final size:26
Alignment explanation
Indices: 794020--794072 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
794010 GTTGACTTAG
*
794020 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTAATCCCCAGTCTAA
* * *
794046 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGAAATTAATCCCCAGTCTAA
794072 G
1 G
794073 ATTGGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTAATCCCCAGTCTAA
Found at i:794792 original size:26 final size:26
Alignment explanation
Indices: 794742--794794 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
794732 GTTGACTTAC
* *
794742 GCATACGGAGTTTATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
794768 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
794794 G
1 G
794795 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:795095 original size:159 final size:157
Alignment explanation
Indices: 794768--795270 Score: 575
Period size: 159 Copynumber: 3.2 Consensus size: 157
794758 CCCATTCTAA
794768 GCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * *
794833 GCACCCAGGGGGGACCGGATCGATCCCCAGCTTGTGCATTCTGCCT-TTTCAGCCAGCGGAGCAC
65 GCACACAGGGGGGACTGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCT-GGTCGGCTGAGCGC
* * * *
794897 CCGCACGCCCTTTTTGTGGGTTGGCTTAG
129 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
** * *
794926 GCAT-CGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGCAGGATCGA
1 GCATAC-GGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * *
794989 CAGCACACAGAGGGGGACTGGGCCGAT-CCCTGACTTGTGCATTATGCCTCTCTGGTCGGCTCAG
63 CAGCACACAG-GGGGGACTGGGTCGATCCCCAG-CTTGTGCATTCTGCCTCTCTGGTCGGCTGAG
* *
795053 TGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
126 CGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
795085 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
795150 GCACGCAGGGTGGGA-TCGGGTCGATCCCCAGCTTATGCATTCTGCCTCTCCGGTCGGCTGAGCG
65 GCACACAGGG-GGGACT-GGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCG
* * *
795214 CCCGTACGCTCGTTTCATGTGTTGGCTTAG
128 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
795244 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
795271 CATATGGAGT
Statistics
Matches: 288, Mismatches: 44, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
157 3 0.01
158 72 0.25
159 203 0.70
160 10 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACACAGGGGGGACTGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCGCCC
GAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:795294 original size:26 final size:26
Alignment explanation
Indices: 795244--795296 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
795234 GTTGGCTTAG
*
795244 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
795270 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
795296 G
1 G
795297 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:795472 original size:197 final size:197
Alignment explanation
Indices: 795137--795501 Score: 466
Period size: 197 Copynumber: 1.9 Consensus size: 197
795127 GGGTTGCGAC
** *
795137 AGCAGGATCGACAGCACGCAGGGTGGGATCGGGTCGATCCCCAGCTTATGCATTCTGCCTCTCCG
1 AGCAGGATCGACAGCACGCAGGAAGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCG
* * * * * * * * * **
795202 GTCGGCTGAGCGCCCGTACGCTCGTTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 ATCAGCTGAACGCCCGCACACTCCTTTCATGGGTTGACTTAGGCATACGAAGTTCACCCCATGTC
*
795267 TAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGTTTGTGGCAGCAGGACCA
131 TAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGTTTGTGGCAGCAGGACCA
795332 AT
196 AT
* * * *
795334 AGCAGGATCGGCAGCACGTAGGAAGGGA-CTGGGTCGATCCTC-GACTTACGCATTTTGCCTCTC
1 AGCAGGATCGACAGCACGCAGGAAGGGATC-GGGTCGATCCCCAG-CTTACGCATTCTGCCTCTC
* * *
795397 CGATCAGCTGAACGCCTGCACATTCCTTTCGTGGGTTGACTTAGGCATACGAAGTTCACCCTCA-
64 CGATCAGCTGAACGCCCGCACACTCCTTTCATGGGTTGACTTAGGCATACGAAGTTCACCC-CAT
**
795461 GTCTAAGCATATGGAGTTCATTCCCTGTCTAAGATCAGACC
128 GTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACC
795502 AGACTGAAGG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
196 2 0.01
197 137 0.97
198 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (197 bp):
AGCAGGATCGACAGCACGCAGGAAGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCG
ATCAGCTGAACGCCCGCACACTCCTTTCATGGGTTGACTTAGGCATACGAAGTTCACCCCATGTC
TAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGTTTGTGGCAGCAGGACCA
AT
Found at i:795980 original size:158 final size:159
Alignment explanation
Indices: 795587--796003 Score: 434
Period size: 160 Copynumber: 2.6 Consensus size: 159
795577 CTCCAGCAGG
* *
795587 CTGAGCGCCCGCACGC-CTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
1 CTGAGCGCCCGCACGCTCAGTTTTGTGGGTTGGCTTA-GCATACGGAGTTCATTCCATGTCTAAG
* * * *
795651 CCCCAGTCAGACTGAGGGTTATGGTAGCAGGACCGACAGCACGCAGAGGTGGACTGGGTCGATTC
65 CCCCAGTCAGACTGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGACTGGGCCGATCC
* * * ** *
795716 TCGACTTGTGCATTATGCCTCTTTGGTAGG
130 CCAACTTATGCATTATGCCTCTCCGGTAGA
* * * * * * *
795746 CTCAGTGCCCGCAAGCTCATTTTTGTGGGTTGACTAATGCATATGGAGTTCATTCCCA-GTCTAA
1 CTGAGCGCCCGCACGCTCAGTTTTGTGGGTTGGCTTA-GCATACGGAGTTCATT-CCATGTCTAA
*** * * *
795810 G-ATTAGATCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCATGCA-AGGGGGGAAC-GGGCCG
64 GCCCCAG-TCAGACTGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGA-GGGGG-ACTGGGCCG
* *
795872 ATCCCCAACTTATGCA-TCTGCCTCTCCGGTCGA
126 ATCCCCAACTTATGCATTATGCCTCTCCGGTAGA
* **
795905 CTGAGCGCCCTCACGCTC-GTTCCGTGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAG
1 CTGAGCGCCCGCACGCTCAGTTTTGTGGGTTGGCTTAG-CATACGGAGTTCATTCCATGTCTAAG
* *
795969 CCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCG
65 CCCCAGTCAGACTGAGGGTTGTGGTAGCAGGACCG
796004 GTAGCAGGAT
Statistics
Matches: 206, Mismatches: 44, Indels: 17
0.77 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 59 0.29
159 44 0.21
160 94 0.46
161 5 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
CTGAGCGCCCGCACGCTCAGTTTTGTGGGTTGGCTTAGCATACGGAGTTCATTCCATGTCTAAGC
CCCAGTCAGACTGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGACTGGGCCGATCCC
CAACTTATGCATTATGCCTCTCCGGTAGA
Found at i:796363 original size:26 final size:26
Alignment explanation
Indices: 796326--796378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
796316 GTTGACTTAG
*
796326 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
796352 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
796378 G
1 G
796379 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:796745 original size:158 final size:155
Alignment explanation
Indices: 796352--796852 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 155
796342 CCCAGTCTAA
* * *
796352 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATTGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACAG-ACTGAGGGTTGCGACAG-AGGATAGAC
* * * * *
796416 AGCACGTAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGTCTCTCCGATCGGTTGAGCGC
63 AGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGATCGGCTGAGCGC
* * *
796481 CCACACGCCCATTTCATGGTTTCGCTTAG
128 CCACACGCTCGTTTCATGGGTT-GCTTAG
* * * * * * * * * *
796510 GCATA-GGAGTTCATTTCATGTCTAA-TTCCCAGCCGGTCTGAGGGTTGTGGCAGCGAGATAGGC
1 GCATACGAAGTTCATTCCATGTCTAAGAT--CAGACAGACTGAGGGTTGCGACAGAG-GATAGAC
* * * *
796573 AGCACGTAAAGGGGGA-CTGGGCCGATCCCCGACTTGCGTATTATGCCTCTCCGATCGGCTCAGC
63 AGCACGT-AGGGGGGATC-GGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGATCGGCTGAGC
*
796637 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
126 GCCCACACGCTCGTTTCATGGGTTG-CTTAG
* * *
796668 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGACTGAGGGTTGCGATAGTAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGA-CAGACTGAGGGTTGCGACAG-AGGATAGAC
* ** **
796732 AGCACGTAGGGGGGATCGGGTTGATCCCCGACTTATGTATTCTGCCTCTCCGGCCGGCTGAGCGC
63 AGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGATCGGCTGAGCGC
* *
796797 CTACATGCTCGTTTCATGGGTTGGCTTAG
128 CCACACGCTCGTTTCATGGGTT-GCTTAG
* *
796826 GCGTATGAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
796853 CATACGGAGT
Statistics
Matches: 277, Mismatches: 51, Indels: 30
0.77 0.14 0.08
Matches are distributed among these distances:
156 4 0.01
157 45 0.16
158 179 0.65
159 45 0.16
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (155 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACAGACTGAGGGTTGCGACAGAGGATAGACAGC
ACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGATCGGCTGAGCGCCCA
CACGCTCGTTTCATGGGTTGCTTAG
Found at i:797765 original size:26 final size:26
Alignment explanation
Indices: 797714--797766 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
797704 GTTGGCTTAG
*
797714 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
797740 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
797766 G
1 G
797767 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:801743 original size:158 final size:158
Alignment explanation
Indices: 801303--801871 Score: 469
Period size: 158 Copynumber: 3.5 Consensus size: 158
801293 CCGGTCGACT
* * * * * * *
801303 CAGCTTGCGCATTCTA-CTTCTCCAGTCGATTGAGCACCTGCACGCTTGTTTCATGGGTTGGCTT
1 CAGCTTGCGCATT-AAGCCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * * * **
801367 AGGCATACAGAGCTCATTCCATGTCTAAGTCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGA
65 AGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCAGACCGAGGGTTATGGCAGTAGGA-CGA
801432 CAGCACGCAAAGGGAGATCGAGCCGATCCC
129 CAGCACGCAAAGGGAGATCGAGCCGATCCC
* * * * * * * *
801462 CAGCTTGTGCATTAAGCCTTTCCGGTTGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTA
1 CAGCTTGCGCATTAAGCCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
* * * * * * * ***
801527 GGCATATGGAGTTCATTGCCA-GTCTAAGATCAAACCAGACTGAGTGTTACGATGGTAGGATCGA
66 GGCATACGGAGTTCATT-CCATGTCTAAGACCCAGCCAGACCGAGGGTTATGGCAGTAGGA-CGA
* * * * *
801591 CAGCACG-TAAGGGGGATCGGGGCGGTCCC
129 CAGCACGCAAAGGGAGATCGAGCCGATCCC
* * ** * *
801620 CTGCTTGCGTATTCTGCCTCTCTGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGTTTA
1 CAGCTTGCGCATTAAGCCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
* *
801685 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGTAGGACTGAC
66 GGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCAGACCGAGGGTTATGGCAGTAGGAC-GAC
* * *
801750 AGCGGGATCGGCAGCACGCAGAAGGGGATCGGGCTGATCCC
130 AGC---A-C-GCA--A---AG--GGAGATCGAGCCGATCCC
* * * ** * *
801791 CAGCTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTA
1 CAGCTTGCGCATTAAGCCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
801856 GGCATACGGAGTTCAT
66 GGCATACGGAGTTCAT
801872 CCCTAGTCTA
Statistics
Matches: 314, Mismatches: 79, Indels: 22
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.01
158 119 0.38
159 97 0.31
160 3 0.01
161 1 0.00
162 1 0.00
163 1 0.00
166 1 0.00
169 2 0.01
171 85 0.27
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CAGCTTGCGCATTAAGCCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCAGACCGAGGGTTATGGCAGTAGGACGACA
GCACGCAAAGGGAGATCGAGCCGATCCC
Found at i:801887 original size:26 final size:26
Alignment explanation
Indices: 801857--801909 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
801847 GTTGACTTAG
*
801857 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
801883 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
801909 G
1 G
801910 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:802401 original size:672 final size:668
Alignment explanation
Indices: 801164--802602 Score: 1638
Period size: 672 Copynumber: 2.1 Consensus size: 668
801154 GCTAAGCGTT
* * *
801164 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTATAACCATACGGAGT
1 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * *
801229 GT-ATTCCAAGTCTAAGATCAAATCGGACGAGGGTTGCGACACAGGATCCAGCCCAGGGAGGACC
66 -TCATTCCCAGTCTAAGATCAAACCGAACGAGGGTTGCGACACAGGATCCAGCCCAGGGAGGACC
* * *
801293 CCGGTCGACTCAGCTTGCGCATTCTACTTCTCCAGTCGATTGAGCACCTGCACGCTTGTTTCATG
130 CCGGTCGACTCAGCTTGCGCATTCTACCTCTCCAGTCGATTGAGCACCCGCACGCCTGTTTCATG
* * * *
801358 GGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGTCCCAGTCAGACCGAGGGTTGTGGCAG
195 GGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGCCCCAATCAGACCGAGGGTTATAGCAG
* *
801423 CGGGACCGACAGCACGCAAAGGGAGATCGAGCCGATCCCCAGCTTGTGCATTAAGCCTTTCCGGT
260 CGGGACCGACAGCACACAAAGGGAGATCGAGCCGATCCCCAGCTTATGCATTAAGCCTTTCCGGT
* * * * * * * * *
801488 TGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTGCCAGTCTA
325 CGACTCAACACCCGAACGCTCATTTCATGGGTTGACTTAGACATACGAAGTTCATTCCCAATCTA
** * * * *
801553 AGATCAAACCAGACTGAGTGTTACGATGGTAGGATCGACAGCACGTAAGGGGGATCGGGGCGGTC
390 AGATCAAACCAGACTGAGTGTTACGACAGCAGGATCGACAGCACGCAAGGGGGACCGGGGCGATC
* * *
801618 CCCTGCTTGCGTATTCTGCCTCTCTGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGTT
455 CCCTGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCT
* *
801683 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGTAGGACTG
520 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTATGGCAGTAGGACCG
* * *
801748 ACAGCGGGATCGGCAGCACGCAGAA-GGGGATCGGGCTGATCCCCAGCTTGCGCATTATGCCTCT
585 ACAGCGGGATCGACACCACGCA-AAGGGGGATCGGGCTAATCCCCAGCTTGCGCATTATGCCTCT
**
801812 -CCG-A-TCGGCTGAGTGCC
649 CCCGCAGTCGGCTGAACGCC
* *
801829 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGT
1 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * *
801894 TCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGC-AGCAGTAGGATCGGTAGCACGCAGGG
66 TCATTCCCAGTCTAAGATCAAACCGAAC-GAGGGTTGCGA-CA-CAGGATC--CAGC-C-CAGGG
* * * * * * * * **
801958 GGGA-CCGGGTCGATCCTC-GACTTGTGCATTCTGCCTCTTCGGTCGGTTGAGCGCCCGTGCGCC
124 AGGACCCCGGTCGA--CTCAG-CTTGCGCATTCTACCTCTCCAGTCGATTGAGCACCCGCACGCC
* ** * ** *
802021 TGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGATCGAGGG
186 TGTTTCATGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGCCCCAATCAGACCGAGGG
* * * ** * * * * *
802086 TTATAGTAGCTGGACTGGTAGCACACAGAGGGGGATTGAGCCGATCCCCGGCTTATGCATTAGGC
251 TTATAGCAGCGGGACCGACAGCACACAAAGGGAGATCGAGCCGATCCCCAGCTTATGCATTAAGC
** * * *
802151 CTTTCCGGTCGACTCAATGCCCGAATGCTCGTTTCATGGGTTGACTTAGACATACGAAGTTCTTT
316 CTTTCCGGTCGACTCAACACCCGAACGCTCATTTCATGGGTTGACTTAGACATACGAAGTTCATT
* * * ** * * * * *
802216 CCCAATCTATGATTAGACTGGACTGAGTGTTGCGGCAGCAGTATCGAGAGCACGCAGGGGGGACC
381 CCCAATCTAAGATCAAACCAGACTGAGTGTTACGACAGCAGGATCGACAGCACGCAAGGGGGACC
* ** * *
802281 GGGTCGAT-CCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGGCTGCACGCTCGTTTTG
446 GGGGCGATCCCCT-GCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCG
** * * *
802345 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTGCAGCCGAACCGAGGTTTGTGGT
510 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTATGGC
* * * * *
802410 AGTAGGACCGATAGTGGGATCGACACCACGCAAAGGGGGATCGGGCTAATCCTCGGCTTGTGCAT
575 AGTAGGACCGACAGCGGGATCGACACCACGCAAAGGGGGATCGGGCTAATCCCCAGCTTGCGCAT
802475 TATGCCTCTCCAGCCGACCTCCCCAGTCGGCTGAACGCC
640 TATGCCTCT-C--CCG-------CAGTCGGCTGAACGCC
** * *
802514 CGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGT
1 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
*
802579 TCATT-CCAGTCTAAGATCATACCG
66 TCATTCCCAGTCTAAGATCAAACCG
802603 GACCAAAGGT
Statistics
Matches: 638, Mismatches: 110, Indels: 33
0.82 0.14 0.04
Matches are distributed among these distances:
664 1 0.00
665 83 0.13
666 11 0.02
667 6 0.01
669 3 0.00
670 9 0.01
671 15 0.02
672 414 0.65
676 3 0.00
684 18 0.03
685 75 0.12
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (668 bp):
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCAAACCGAACGAGGGTTGCGACACAGGATCCAGCCCAGGGAGGACCC
CGGTCGACTCAGCTTGCGCATTCTACCTCTCCAGTCGATTGAGCACCCGCACGCCTGTTTCATGG
GTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGCCCCAATCAGACCGAGGGTTATAGCAGC
GGGACCGACAGCACACAAAGGGAGATCGAGCCGATCCCCAGCTTATGCATTAAGCCTTTCCGGTC
GACTCAACACCCGAACGCTCATTTCATGGGTTGACTTAGACATACGAAGTTCATTCCCAATCTAA
GATCAAACCAGACTGAGTGTTACGACAGCAGGATCGACAGCACGCAAGGGGGACCGGGGCGATCC
CCTGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTATGGCAGTAGGACCGA
CAGCGGGATCGACACCACGCAAAGGGGGATCGGGCTAATCCCCAGCTTGCGCATTATGCCTCTCC
CGCAGTCGGCTGAACGCC
Found at i:802593 original size:25 final size:26
Alignment explanation
Indices: 802542--802593 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
802532 GTTGACTTAG
802542 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
802568 GCATATGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
802593 G
1 G
802594 ATCATACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:802848 original size:26 final size:26
Alignment explanation
Indices: 802812--802864 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
802802 GTTGGCTTAG
802812 GCATACGGAGTTCATT-CTATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
802838 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
802864 G
1 G
802865 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:804720 original size:159 final size:159
Alignment explanation
Indices: 804518--804933 Score: 444
Period size: 159 Copynumber: 2.6 Consensus size: 159
804508 GGATCGAGCA
* * * *
804518 GATCCCCGACTTACGTATTCTGCCTCTTCGACCAGCTAAGCGCCCGCACGCCCATTTCATGGGTT
1 GATCCCCGACTTACGCATTCTGCCTCTTCGGCCAGCTAAGCGCCCGCACGCTCATTTCGTGGGTT
* * ** * *
804583 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGACAGCGG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCAAGGGTTGGGACAGCAG
* * *
804647 GACCGACAGCACGTAGAGGGGGA-CCG-GGC
130 GACCGACAGCACGCA-AGGGGCATCCGAGTC
* * * * * * * * *
804676 TGATCCCCGACTTGCGCATTATGCCTCTTTGGCCTGTTCAGCGCCCGTACACTCATTTTGTGGGT
1 -GATCCCCGACTTACGCATTCTGCCTCTTCGGCCAGCTAAGCGCCCGCACGCTCATTTCGTGGGT
* * ** *
804741 TGACTTAGGCATACAGAGTTTGTTCC-TAGTCTAAGATCAGACCGGACCAAGGGTTGGGACAGCA
65 TGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCGGACCAAGGGTTGGGACAGCA
*
804805 GGATCGACAGCACGCAAGGGGCATCCGAGTC
129 GGACCGACAGCACGCAAGGGGCATCCGAGTC
* * * * * * **
804836 GATCCCCGACTTATGCATTCTGCTTCTTCGGTCGGCTAAGCGCCGGCATGCTCGCTTCGTGGGTT
1 GATCCCCGACTTACGCATTCTGCCTCTTCGGCCAGCTAAGCGCCCGCACGCTCATTTCGTGGGTT
804901 GGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAA
804934 CCATATGGAG
Statistics
Matches: 204, Mismatches: 48, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
158 10 0.05
159 191 0.94
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (159 bp):
GATCCCCGACTTACGCATTCTGCCTCTTCGGCCAGCTAAGCGCCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCGGACCAAGGGTTGGGACAGCAGG
ACCGACAGCACGCAAGGGGCATCCGAGTC
Found at i:804945 original size:26 final size:26
Alignment explanation
Indices: 804909--804959 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
804899 TTGGCTTAGG
804909 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
*
804935 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
804960 GATCGAACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:805258 original size:171 final size:170
Alignment explanation
Indices: 804997--805303 Score: 400
Period size: 171 Copynumber: 1.8 Consensus size: 170
804987 GTAGGACCAA
* ** * *
804997 CAGCAGGATCGTCAGCAAGCAGGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCG
1 CAGCAGGATCGACAGCAAGCAAAGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCG
** * *
805062 ATCGGCTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTTAT-TCCATGT
66 ATCGGCTGAGCACCCACACGCTCATTTCATGGGTTGAATTAGGCATACGAAGTTCATCCCCA-GT
805126 CTAAGCACCAGCCAGACCAAAGATTGTGGCTGTAGGATCGG
130 CTAAGCACCAGCCAGACCAAAGATTGTGGCTGTAGGATCGG
* *
805167 CAGCAGGATCGACAGCATGCATAAGGGGACCGGGCTGATCCTCAGCTTGCGCATTATGCCTCTCC
1 CAGCAGGATCGACAGCAAGCA-AAGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCC
* * *** * ** * *
805232 GGTCGGCTGAGCGCCGGTATGCTCATTTTGTGGGTTGAATTAGGTATATGAAGTTCATCCCCAGT
65 GATCGGCTGAGCACCCACACGCTCATTTCATGGGTTGAATTAGGCATACGAAGTTCATCCCCAGT
805297 CTAAGCA
130 CTAAGCA
805304 TATGGAGTTC
Statistics
Matches: 114, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
170 19 0.17
171 92 0.81
172 3 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (170 bp):
CAGCAGGATCGACAGCAAGCAAAGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCG
ATCGGCTGAGCACCCACACGCTCATTTCATGGGTTGAATTAGGCATACGAAGTTCATCCCCAGTC
TAAGCACCAGCCAGACCAAAGATTGTGGCTGTAGGATCGG
Found at i:805306 original size:26 final size:26
Alignment explanation
Indices: 805277--805327 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
805267 TGAATTAGGT
*
805277 ATATGAAGTTCATCCCCAGTCTAAGC
1 ATATGAAGTTCATCCCCAATCTAAGC
* *
805303 ATATGGAGTTCATTCCCAATCTAAG
1 ATATGAAGTTCATCCCCAATCTAAG
805328 ATAAGATCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATATGAAGTTCATCCCCAATCTAAGC
Found at i:805814 original size:26 final size:26
Alignment explanation
Indices: 805776--805828 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
805766 GTTGGCTTAG
805776 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
805802 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
805828 G
1 G
805829 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:806048 original size:869 final size:869
Alignment explanation
Indices: 804342--806052 Score: 2081
Period size: 869 Copynumber: 2.0 Consensus size: 869
804332 TCGATCCAAT
* * *
804342 GCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGTCCGTACGCTCATTTCATGGGTTGACTTAGG
1 GCTTGCGCATCATGCCTCTCCGGTCGACTGAGCGTCCGTACGCTCATTTCATGGGTTGAATTAGG
*** * * **
804407 CATACAGAGTTCATCTTTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATC
66 CATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATAAGATCAGATC
* * * ** * * * *
804472 GAGGGTTGCGGCCGTAAGATTGGTAGCATATAGGGGGGATCGAGCAGATCCCCGACTTACGTATT
131 GAGGGTTGCGACAGTAAGATCGACAGCACATAGGGGGGACCGAGCAGATCCCCCACTTACGCATT
* *
804537 CTGCCTCTTCGACCAGCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTT
196 CTACCTCTTCGACCAGCTAAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTT
* * **
804602 CATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGACAGCGGGACCGACAGCACGTAGAGGG
261 AATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTGGTGACAGCGGGACCGACAGCACACAGAGGG
* * ** * *
804667 GGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTTGGCCTGTTCAGCGCCCGTACACTCAT
326 GGACCGAGCTGATCCCAGACTTGCGCATTATGCCTCTTCCGACTGTTCAACGCCCGTACACTCAT
** ** **
804732 TTTGTGGGTTGACTTAGGCATACAGAGTTTGTTCCTAGTCTAAGATCAGACCGGACCAAGGGTTG
391 TTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGAAAGGACCAAGGGTTG
* * *
804797 GGACAGCAGGATCGACAGCACGCAAGGGGCATCCGAGTCGATCCCCGACTTATGCATTCTGCTTC
456 AGACAGCAGGATCGACAGCACGCAAGGGGCATCCGAGTCGATCCCCGACTTACGCATTCTGCCTC
* * ** * *
804862 TTCGGTCGGCTAAGCGCCGGCATGCTCGCTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
521 TTCAGTCGGCTAAACGCCCACACGCTCACTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * **
804927 TGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGTAGTAGG
586 TGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTGCGACAGTAGG
** *
804992 ACCAACAGCAGGATCGTCAGCAAGCAGGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCT
651 ACCAACAGCAGGATCCACAGCAAGCAGGGGGGATCGGGCTGATCCCCAGCTTACGCATTCTGCCT
* *
805057 CTCCGATCGGCTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTTATTCC
716 CTCCGACCGGCTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCC
* * * * * *
805122 ATGTCTAAGCACCAGCCAGACCAAAGATTGTGGCTGTAGGATCGGCAGCAGGATCGACAGCATGC
781 ATGTCTAAGCACCAGCCAGACCAAAGATTGCGGCTGCAGGACCAGAAGCAAGATCGACAGCATGC
805187 ATAAGGGGACCGGGCTGATCCTCA
846 ATAAGGGGACCGGGCTGATCCTCA
* * * **
805211 GCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCG-CCGGTATGCTCATTTTGTGGGTTGAATTAG
1 GCTTGCGCATCATGCCTCTCCGGTCGACTGAGCGTCC-GTACGCTCATTTCATGGGTTGAATTAG
* * *
805275 GTATA-TGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATAAGATCAGA
65 GCATACAG-AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATAAGATCAGA
* * * * *
805339 TCGAGGGTTGCGACAGTAGGATCGACAGCACGTAGGGGGGACCGGGTC-GATCCCCCCCTTTCGC
129 TCGAGGGTTGCGACAGTAAGATCGACAGCACATAGGGGGGACCGAG-CAGATCCCCCACTTACGC
* * * *
805403 ATTCTACCTCTTTGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
193 ATTCTACCTCTTCGACCAGCTAAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGA
* *
805468 GTTAATTCCATGTCTAAGCCCCAGCCGGA-TCGAGGGTGGTGGCAGCGGGACTGACAGCACACAG
258 GTTAATTCCATGTCTAAGCCCCAGCCGGACT-GAGGGTGGTGACAGCGGGACCGACAGCACACAG
* * *
805532 AGGGGGACCGAGC-GATCCCTAG-CTTGTGCATTATGCCTC-TCCGATTGGTTCAATGCCCGTAC
322 AGGGGGACCGAGCTGATCCC-AGACTTGCGCATTATGCCTCTTCCGACT-GTTCAACGCCCGTAC
* ** * * *
805594 GCTTGTTTCATGGGTTGACTTAGGCATAC-GAAGTTCATTCCTAGTTTAAGATCAGAAAGGATCG
385 ACTCATTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCTAGTCTAAGATCAGAAAGGACCA
* * * * *
805658 AGGGTTGCAG-CAGCAGGATCGACAGCACGCATGGGGGGA-CCGGGTC-AGTCCCCGACTTGCGT
449 AGGGTTG-AGACAGCAGGATCGACAGCACGCA-AGGGGCATCCGAGTCGA-TCCCCGACTTACGC
*
805720 ATTCTGCCTC-TCTAGTCGGCTAAACGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
511 ATTCTGCCTCTTC-AGTCGGCTAAACGCCCACACGCTCACTTCGTGGGTTGGCTTAGGCATACGG
* * * *
805784 AGTTCATTCCATGTCTAAGCATACGGTGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTT
575 AGTTCATTCCATGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTT
* ** * * * **
805849 GCTACAGTAGGACCAGTAGCAGGATCCACAGCGCA-CAATGGGGGA-CAAGG-TCGATCCCTGGC
640 GCGACAGTAGGACCAACAGCAGGATCCACAGC-AAGC-AGGGGGGATC-GGGCT-GATCCCCAGC
* *
805911 TTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACGCTCGTTTCATTGGTTGGCTTAGGCA
701 TTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCA
* * *** * * *
805976 TACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATTGAGGGTTGCGG-TAGCGGGACCAGAA
766 TACGAAGTTCATT-CCATGTCTAAGCACCAG-CCAGACCAAAGATTGCGGCT-GCAGGACCAGAA
806038 GCAAGATCGACAGCA
828 GCAAGATCGACAGCA
806053 CGCAGGGGGG
Statistics
Matches: 707, Mismatches: 117, Indels: 36
0.82 0.14 0.04
Matches are distributed among these distances:
867 7 0.01
868 279 0.39
869 417 0.59
870 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (869 bp):
GCTTGCGCATCATGCCTCTCCGGTCGACTGAGCGTCCGTACGCTCATTTCATGGGTTGAATTAGG
CATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATAAGATCAGATC
GAGGGTTGCGACAGTAAGATCGACAGCACATAGGGGGGACCGAGCAGATCCCCCACTTACGCATT
CTACCTCTTCGACCAGCTAAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTT
AATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTGGTGACAGCGGGACCGACAGCACACAGAGGG
GGACCGAGCTGATCCCAGACTTGCGCATTATGCCTCTTCCGACTGTTCAACGCCCGTACACTCAT
TTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGAAAGGACCAAGGGTTG
AGACAGCAGGATCGACAGCACGCAAGGGGCATCCGAGTCGATCCCCGACTTACGCATTCTGCCTC
TTCAGTCGGCTAAACGCCCACACGCTCACTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
TGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTGCGACAGTAGG
ACCAACAGCAGGATCCACAGCAAGCAGGGGGGATCGGGCTGATCCCCAGCTTACGCATTCTGCCT
CTCCGACCGGCTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCC
ATGTCTAAGCACCAGCCAGACCAAAGATTGCGGCTGCAGGACCAGAAGCAAGATCGACAGCATGC
ATAAGGGGACCGGGCTGATCCTCA
Found at i:806157 original size:170 final size:171
Alignment explanation
Indices: 805802--806169 Score: 402
Period size: 170 Copynumber: 2.2 Consensus size: 171
805792 CCATGTCTAA
* * * * * *
805802 GCATACGGTGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCTACAGTAGGACCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGACCAGAA
* * * **
805867 GCAGGATCCACAGCGCACAATGGGGGACAAGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGA
66 GCAAGATCCACAGCACACAAGGGGGGACAAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGA
* *
805932 CCGGCTGAGCACCCACACGCTCGTTTCATTGGTTGGCTTAG
131 CCGACTGAGCACCCACACGCTCGTTTCATAGGTTGGCTTAG
* * * ** *
805973 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGTAGCGGGACCAGAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGACCAGAA
* * ** * ** *
806038 GCAAGATCGACAGCACGC-AGGGGGGATTAGGTCGGTCCCCAGCTTGTGCATTCTGCCTCTCTGA
66 GCAAGATCCACAGCACACAAGGGGGGACAAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGA
** *
806102 CTTACTGAGCGCCTGCACAC-C-CGTTTCATAGGTTGGCTTAG
131 CCGACTGAGCACC--CACACGCTCGTTTCATAGGTTGGCTTAG
*
806143 GCATAGGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
806170 CCCCAGCCGG
Statistics
Matches: 162, Mismatches: 32, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
169 3 0.02
170 86 0.53
171 68 0.42
172 5 0.03
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (171 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGACCAGAA
GCAAGATCCACAGCACACAAGGGGGGACAAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGA
CCGACTGAGCACCCACACGCTCGTTTCATAGGTTGGCTTAG
Found at i:806333 original size:26 final size:26
Alignment explanation
Indices: 806303--806353 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
806293 TTAACTTAGG
*
806303 CATACAGAGTTCATCCCCAGTCTAAC
1 CATACAGAGTTCATCCCCAATCTAAC
* *
806329 CATACGGAGTTCATTCCCAATCTAA
1 CATACAGAGTTCATCCCCAATCTAA
806354 GATCGGATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAC
Found at i:806682 original size:343 final size:342
Alignment explanation
Indices: 806037--806697 Score: 778
Period size: 343 Copynumber: 1.9 Consensus size: 342
806027 CGGGACCAGA
** * * *
806037 AGCAAGATCGACAGCACGCAGGGGGGATTAGGTCGGTCCCCAGCTTGTGCATTCTGCCTCTCTGA
1 AGCAAGATCGACAGCACGCAGGGGGGACGAGGCCGATCCCCAGCTTGTGAATTCTGCCTCTCTGA
*
806102 CTTACTGAGCGCCTGCACACCCGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
66 CTTACTGAGCGCCCGCACACCCGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
** * * * * * * *
806167 AAGCCCCAGCCGGATCGAGGGTTGTGGGAGTGGGATCGACAGCACACAGAGGGGGGCTGGGCTGA
131 AAGCCCCAGCCAAACCGAGGGTTGTGGCAGCGGGATCGACAGAACACAGAGGGGAGCTGGACCGA
* * * *
806232 TCCTCGGCTTACACATTATGCCTCTCCGACTGACTCAGCGCTCGAACGCTCGTTTCATGGGTTAA
196 TCCTCGGCTTACACATTATACCTCTCCGACCGACTCAGCGCCCGAACGATCGTTTCATGGGTTAA
806297 CTTAGGCATACAGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCCAATCTAAGATCGGAT
261 CTTAGGCATACAGAGTTCATCCCCAGTCTAACCATACGGAGTTCATT-CCAATCTAAGATCGGAT
806362 CAGACTGAGGGTTGCGAC
325 CAGACTGAGGGTTGCGAC
* *
806380 AGCAGGATCGACAGCACGCAGGGGGGACCGA-GCCGATCCCC-GATTTGTGAATTCTGCCTCTCT
1 AGCAAGATCGACAGCACGCAGGGGGGA-CGAGGCCGATCCCCAG-CTTGTGAATTCTGCCTCTCT
* * ** * *
806443 GA-TTGGCTGAGCGCCCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
64 GACTT-ACTGAGCGCCCGCACACCCGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
** * *
806507 TCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCGGGA-CTGGTAGAACGCAGAGTGGGATC-GG
128 TCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCGGGATC-GACAGAACACAGAG-GGGAGCTGG
*** * ** * * **
806570 ACCGATCC-CTGGCTTGTGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGATCGTTTTGTG
191 ACCGATCCTC-GGCTTACACATTATACCTCTCCGACCGACTCAGCGCCCGAACGATCGTTTCATG
* ** * * *
806634 GTTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATGCGGAGTTCATTCCAATCTAAGA
255 GGTTAACTTAGGCATACAGAGTTCATCCCCA-GTCTAACCATACGGAGTTCATTCCAATCTAAGA
806698 GTTTGAGCCA
Statistics
Matches: 264, Mismatches: 47, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
342 19 0.07
343 240 0.91
344 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (342 bp):
AGCAAGATCGACAGCACGCAGGGGGGACGAGGCCGATCCCCAGCTTGTGAATTCTGCCTCTCTGA
CTTACTGAGCGCCCGCACACCCGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCCCCAGCCAAACCGAGGGTTGTGGCAGCGGGATCGACAGAACACAGAGGGGAGCTGGACCGA
TCCTCGGCTTACACATTATACCTCTCCGACCGACTCAGCGCCCGAACGATCGTTTCATGGGTTAA
CTTAGGCATACAGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCAATCTAAGATCGGATC
AGACTGAGGGTTGCGAC
Found at i:807894 original size:184 final size:184
Alignment explanation
Indices: 807651--807990 Score: 477
Period size: 184 Copynumber: 1.8 Consensus size: 184
807641 GATCGGGTCG
* * *
807651 ATCCTTGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCACCCGCACGATCGTTTCGTGGGTTG
1 ATCCTCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGATCGTTTCGTGGGTTG
* *
807716 ACTTAGGCATACAAAGTTCATCCCTAGT-CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
66 ACTTAGGCATACAAAGTTCATCCCT-GTACTAAGCAGACGGAGATCATTCCCAGTCTAAGATCAG
**
807780 ACCAGACTGAGGATTGTGACAGCAGGATCGACAGCATGCAGGGGGGACCAGGCCA
130 ACCAGACCAAGGATTGTGACAGCAGGATCGACAGCATGCAGGGGGGACCAGGCCA
* **
807835 ATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCAC-ACTCGTTTCGTGGGTT
1 ATCCTCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGA-TCGTTTCGTGGGTT
* *** * *
807899 GAGTTAGGCATATGGAGTTCATTCCTTTACTAAGCAGACGGAGATCATTCCCAGTCTAAGATCAG
65 GACTTAGGCATACAAAGTTCATCCCTGTACTAAGCAGACGGAGATCATTCCCAGTCTAAGATCAG
* * *
807964 ACCGGACCAAGGGTTGTGATAGCAGGA
130 ACCAGACCAAGGATTGTGACAGCAGGA
807991 CCAGCAACAG
Statistics
Matches: 135, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
183 2 0.01
184 133 0.99
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (184 bp):
ATCCTCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGATCGTTTCGTGGGTTG
ACTTAGGCATACAAAGTTCATCCCTGTACTAAGCAGACGGAGATCATTCCCAGTCTAAGATCAGA
CCAGACCAAGGATTGTGACAGCAGGATCGACAGCATGCAGGGGGGACCAGGCCA
Found at i:808144 original size:26 final size:26
Alignment explanation
Indices: 808115--808167 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
808105 GTTGACTTAG
*
808115 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
808141 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
808167 G
1 G
808168 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:808600 original size:158 final size:154
Alignment explanation
Indices: 808148--808630 Score: 441
Period size: 158 Copynumber: 3.1 Consensus size: 154
808138 TAAGCATATG
* ** * *
808148 GAGTTCATTCCCAATCTAAGATCAGATCGGAGCGAGGGTTGCGATAGGAGGATCAGTC-GCACAC
1 GAGTTCATTCCCAGTCTAAGATCA-ATCGGA-CGAGGGTTGCGGCAGCAGGATCA-ACAGCACAC
* * * ** * * *
808212 AGGGGGTATCGGGCCGGTCCCCAACTTGCGCATTCTACCTCTTTGATCGGCTGAGTGCCTGCAAG
63 AGGGGGGATCGGG-CGGTCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
* * * *
808277 CCCATTTTGTGGGTTGGCTTAGGCATAGG
127 CTCGTTTCGTGGGTTGGCTTAGGCATA-C
** * * * * *
808306 GAGTTCATT-CCATGTCTAAGCCCCAGTTGGACAGAGGGTTGTGGCAGCGGGA-CTGACAGCACA
1 GAGTTCATTCCCA-GTCTAAG-ATCAATCGGAC-GAGGGTTGCGGCAGCAGGATC-AACAGCACA
* * * ** * *
808369 TAGAGGGGGATCGGGCTGATCCCCCGCTTTTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCA
62 CAG-GGGGGATCGGGC-GGTCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCA
* **
808434 CGCTCGTTTCGTTGGTTAACTTAGGCATAC
125 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
808464 AGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGGCAGTAGGATCAACAGCACAC
1 -GAGTTCATTCCCAGTCTAAGATC-AATCGGA-CGAGGGTTGCGGCAGCAGGATCAACAGCACAC
** * *
808529 AGGGGGGATCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCGCG
63 AGGGGGGATCGGG-CGGTCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
808594 CTCGTTTCGTGGGTTGGCTTAGGCATAC
127 CTCGTTTCGTGGGTTGGCTTAGGCATAC
808622 GAAGTTCAT
1 G-AGTTCAT
808631 GCCATGTCTA
Statistics
Matches: 255, Mismatches: 56, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 7 0.03
158 126 0.49
159 117 0.46
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (154 bp):
GAGTTCATTCCCAGTCTAAGATCAATCGGACGAGGGTTGCGGCAGCAGGATCAACAGCACACAGG
GGGGATCGGGCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATAC
Found at i:809045 original size:26 final size:26
Alignment explanation
Indices: 809016--809068 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
809006 GTTGAGATAG
809016 GCATA-CGATGTTCATCCCCAATCTAA
1 GCATATCGA-GTTCATCCCCAATCTAA
* * *
809042 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATCGAGTTCATCCCCAATCTAA
809068 G
1 G
809069 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATCGAGTTCATCCCCAATCTAA
Found at i:809425 original size:159 final size:156
Alignment explanation
Indices: 809042--809434 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 156
809032 CCCAATCTAA
* * **
809042 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCCACA
* * * * * *
809107 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTCCATATTCTACCTCTCCGACCGGCTGAGCGCC
65 GCACGTAGGGGAGATCAGGCCGATACCCGACTTCCACATTCTACCTCTCCGACCGGCTCAGCGCC
* *
809172 CACAGAACCGTTTCGTTGGTTGGCTTAG
130 CACAG-ACCGTTTCGTGGGTTGACTTAG
* ** * * *
809200 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGTAGCTGGA-CCGA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCC-A
* ** *** * * *
809263 CAGCACGTAGAGGGAGATCAGGCCGATACTCGGTTTGTGCATTCTCCCTCTCCGACTGGCTCAGT
63 CAGCACGTAG-GGGAGATCAGGCCGATACCCGACTTCCACATTCTACCTCTCCGACCGGCTCAGC
809328 GCCCGTAC-G-CTCGTTTCGTGGGTTGACTTAG
127 GCCC--ACAGAC-CGTTTCGTGGGTTGACTTAG
*
809359 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGA-CTGAGGGTTGTGGCAGCAGGATCCAC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGATC-GAGGGTTGTGGCAGCAGGATCCAC
809423 AGCACGTAGGGG
64 AGCACGTAGGGG
809435 GAATGGGCCA
Statistics
Matches: 191, Mismatches: 33, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
157 4 0.02
158 61 0.32
159 120 0.63
160 4 0.02
161 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCCACAG
CACGTAGGGGAGATCAGGCCGATACCCGACTTCCACATTCTACCTCTCCGACCGGCTCAGCGCCC
ACAGACCGTTTCGTGGGTTGACTTAG
Found at i:809897 original size:26 final size:26
Alignment explanation
Indices: 809868--809923 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
809858 GGGGTTGACT
*
809868 TAAGCATACGGAGTTCA-TCCCTAGTC
1 TAAGCATACAGAGTTCATTCCC-AGTC
809894 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
809920 TAAG
1 TAAG
809924 ATTGGACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:810198 original size:159 final size:157
Alignment explanation
Indices: 810035--810399 Score: 358
Period size: 158 Copynumber: 2.3 Consensus size: 157
810025 CCCAGACACC
* * *
810035 CATTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAGCCAGACTAAGGG
1 CATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCA-AACCAAACTAAGGG
* ** ** ** * * *
810100 TTGTGGTAGCGGGA-CTAGTA-CCATGTAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTAT
65 TTCTAATAGCAAGATC-AACAGCC-CGTAG-GGGGGACCGAGCCGATCCCCGGCTTCTGCATTAT
* *
810163 GCCTCTTCGACTGGCTCAACGCCCGCATGCT
127 GCCTCTTCGACTGGCTCAACACCCGCACGCT
** * * * * * * * *
810194 CATTTTGTGGGTTGACTTATGCATACGAAATTCATTCC-TAGTCTAAGATCAAATCAAACTGAGG
1 CATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG-CCAAACCAAACTAAGG
* *
810258 GTTCTAATAGCAAGATCAACAGCCCGTAGGGGGGACCGAGCCGGTCCCCGGCTTCTGCATTTTGC
64 GTTCTAATAGCAAGATCAACAGCCCGTAGGGGGGACCGAGCCGATCCCCGGCTTCTGCATTATGC
* * *
810323 CTCTTCGGCTGGCTGAGCACCCGCACGCT
129 CTCTTCGACTGGCTCAACACCCGCACGCT
* * *
810352 CGTTTCATTGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGC
1 CATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
810400 ATACGGAGTT
Statistics
Matches: 161, Mismatches: 40, Indels: 12
0.76 0.19 0.06
Matches are distributed among these distances:
158 93 0.58
159 63 0.39
160 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.26
Consensus pattern (157 bp):
CATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCAAACCAAACTAAGGGT
TCTAATAGCAAGATCAACAGCCCGTAGGGGGGACCGAGCCGATCCCCGGCTTCTGCATTATGCCT
CTTCGACTGGCTCAACACCCGCACGCT
Found at i:810401 original size:26 final size:26
Alignment explanation
Indices: 810372--810424 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
810362 GTTGGCTTAG
810372 GCATACGGAGTTCAATCC-ATGTCTAA
1 GCATACGGAGTTCAATCCTA-GTCTAA
*
810398 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCAATCCTAGTCTAA
810424 G
1 G
810425 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCTAGTCTAA
Found at i:811117 original size:26 final size:26
Alignment explanation
Indices: 811087--811136 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
811077 GACTTAGGTG
811087 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
811113 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
811137 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:811519 original size:159 final size:158
Alignment explanation
Indices: 811188--811553 Score: 407
Period size: 159 Copynumber: 2.3 Consensus size: 158
811178 CGCAGAGGGA
* * * *
811188 CCCGTTTCATGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACTGAG
1 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAG
** * *
811253 GGTTGTGGCAGCGGGACTGACAGCACGTAGAGGGGGACCAGGTCAATCCCTGGCTTACAGATTAT
66 GGTTGTGGCAGCGGGACTGACAGCACACAGAGAGGGACCAGGTCAATCCCTGACTTACAGATTAT
* *
811318 GCCTCTCCGGCCGACTGAATGCCCCTACG
131 ACCTCTCCGACCGACTG-ATGCCCCTACG
* ** *
811347 CCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCCGAACCGAG
1 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAG
* * * * * * *
811412 GGTTGTGGCAGCGGGATTGACAGCACACAGAGAGGGATC-GGGCTGATCCCTGACTTGCGGATTC
66 GGTTGTGGCAGCGGGACTGACAGCACACAGAGAGGGACCAGGTC-AATCCCTGACTTACAGATTA
* * **
811476 TACCTTTCCGACTGGTTG-TGCGTCCGC-ACG
130 TACCTCTCCGACCGACTGATGC--CC-CTACG
* *
811506 CTCGTTCCATGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAA
1 CCCGTTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAA
811554 ACATATGGAG
Statistics
Matches: 171, Mismatches: 31, Indels: 10
0.81 0.15 0.05
Matches are distributed among these distances:
157 3 0.02
158 4 0.02
159 163 0.95
160 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAG
GGTTGTGGCAGCGGGACTGACAGCACACAGAGAGGGACCAGGTCAATCCCTGACTTACAGATTAT
ACCTCTCCGACCGACTGATGCCCCTACG
Found at i:812288 original size:26 final size:26
Alignment explanation
Indices: 812252--812304 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
812242 GTTGACTTAG
812252 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
812278 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
812304 G
1 G
812305 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:812473 original size:26 final size:26
Alignment explanation
Indices: 812437--812489 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
812427 GTTGGCTTAG
812437 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
812463 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
812489 G
1 G
812490 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:812491 original size:185 final size:184
Alignment explanation
Indices: 812179--812844 Score: 626
Period size: 185 Copynumber: 3.5 Consensus size: 184
812169 ACCACCCGTT
* * * * * * *
812179 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCGGTTAAGCGCCCGCACGCTCGTTTCATGGGT
*
812244 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTG
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
* *
812309 GACCGGATCGAGGGTTACGGTAGCAGGATCAGTTGCATGCAAGGGGGGACCAGGG
131 GACCGGATCGAGGGTTACGGTAACAAGATCAGTTGCATGCAAGGGGGGACC-GGG
* * * *
812364 CGATCCCTGGCTTGTGCATTCTACCTCTCCGGTCGGTAAAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCGGTTAAGCGCCCGCACGCTCGTTTCATGGGT
* * * **
812429 TGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
66 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
* * * * * **
812493 GGACAGGATCGAAGGTTACGATAACAAGACCAGTAGTAGGATCTGTATCACACGAGGCAGACCTG
130 GGACCGGATCGAGGGTTACGGTAACAAGATCAGT--T-GCA--TG---CA-A-G-GGGGGACC-G
812558 GG
183 GG
* * * * * * *
812560 CGAT-CCTCGGCTTGTGCATTCTGTCTCTCCGGCCAGTTGAGTG-ACGCAACGCTTGTTTTATGG
1 CGATCCCT-GGCTTGTGCATTCTGCCTCTCCGGCCGGTTAAGCGCCCGC-ACGCTCGTTTCATGG
* *
812623 GTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGAT
64 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
* * * ** * * ** *
812688 CGAACCAGACCGAGGGTTGGGGCAATAAGATC-GACAGCATGC-AGAGGGGACCGGG
129 CGGACCGGATCGAGGGTTACGGTAACAAGATCAG-TTGCATGCAAGGGGGGACCGGG
* * * *
812743 CCGATCCCTGGCTTGCT-CATTCTGCCTCTCCGGCCGGTTGAGCACCTGCATGCTCGTTTCATGG
1 -CGATCCCTGGCTTG-TGCATTCTGCCTCTCCGGCCGGTTAAGCGCCCGCACGCTCGTTTCATGG
* * * *
812807 GCTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
64 GTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
812845 CTCAACCGGA
Statistics
Matches: 388, Mismatches: 72, Indels: 43
0.77 0.14 0.09
Matches are distributed among these distances:
183 6 0.02
184 82 0.21
185 147 0.38
186 1 0.00
187 1 0.00
188 3 0.01
190 2 0.01
191 2 0.01
193 4 0.01
194 1 0.00
195 8 0.02
196 128 0.33
197 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
CGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCGGTTAAGCGCCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
GACCGGATCGAGGGTTACGGTAACAAGATCAGTTGCATGCAAGGGGGGACCGGG
Found at i:812668 original size:26 final size:26
Alignment explanation
Indices: 812630--812685 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
812620 TGGGTTGACT
*
812630 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAATC
* *
812656 TAAGCATATGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATCCCCAATC
812682 TAAG
1 TAAG
812686 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAATC
Found at i:812947 original size:159 final size:159
Alignment explanation
Indices: 812723--813161 Score: 523
Period size: 159 Copynumber: 2.8 Consensus size: 159
812713 TAAGATCGAC
* * * * * *
812723 AGCATGCAGA-GGGGACCGGGCCGATCCCTGGCTTGCTCATTCTGCCTCTCCGGCCGGTTGAGCA
1 AGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCA
* * *
812787 CCTGCATGCTCGTTTCATGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCTCAAC
66 CCCGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCC-CAAC
* * *
812851 CGGACCCAGGGTTATGGTAGCGGGACCGAT
130 CGGACCCAGGGTTATGGCAACAGGACCGAT
* *
812881 AGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCA
1 AGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCA
*
812946 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCCAACC
66 CCCGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCCAACC
* *
813011 GGACCGAGGGTTATGGCAACAGGACCGGT
131 GGACCCAGGGTTATGGCAACAGGACCGAT
* * * * *
813040 AACACGCAGAGGGGGATCGGGTCGAT-CCTCGGCTT-CACATTATGCATCTCCGACCGACTCAA-
1 AGCACGCAGAGGGGGATCGGGCCGATCCCT-GGCTTGCACATTCTGCCTCTCCGACCGGCT-AAG
* * ** * **
813102 CGA-TCGAACGCTCGTTTGGTGGGTTAACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGT
64 C-ACCCGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGT
813162 ACCCGGAGTT
Statistics
Matches: 246, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
157 1 0.00
158 81 0.33
159 162 0.66
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
AGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCA
CCCGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCCAACC
GGACCCAGGGTTATGGCAACAGGACCGAT
Found at i:813512 original size:26 final size:26
Alignment explanation
Indices: 813478--813528 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
813468 TTGGCTTAGG
813478 CATACGGAGTTCATTC-CATGTCTAAA
1 CATACGGAGTTCATTCTCA-GTCTAAA
*
813504 CATATGGAGTTCATTCTCAGTCTAA
1 CATACGGAGTTCATTCTCAGTCTAA
813529 GATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCTCAGTCTAAA
Found at i:814236 original size:26 final size:26
Alignment explanation
Indices: 814200--814252 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
814190 GTTGACCTAG
814200 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
814226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
814252 G
1 G
814253 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:814966 original size:26 final size:26
Alignment explanation
Indices: 814936--814988 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
814926 ATTGACTTAG
* *
814936 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
814962 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
814988 G
1 G
814989 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:821510 original size:26 final size:26
Alignment explanation
Indices: 821481--821533 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
821471 TCGGTCCGAT
821481 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
821507 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
821533 C
1 C
821534 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:821858 original size:159 final size:158
Alignment explanation
Indices: 821507--821911 Score: 417
Period size: 159 Copynumber: 2.6 Consensus size: 158
821497 ACTCCGTATG
* * * * *
821507 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG-AGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCA-CTCAG
* ** * **
821571 CGGACCGGAGAGGCAGAATGTGCAAGCAGGGGACCGACCCGATCCCCCCTGCGTGCTGTCAATCC
65 CCGACCGGAGAGGCAGAATGCACAAGCAGGGGACCGACCCGATCCCCCCTGCATGCTACCAATCC
* * *
821636 TGCTGCCACAACGCTCGGTCTAGTCTGAT
130 CGCTGCCACAACCCTCGGTCTAGGCTGAT
* * * * *
821665 CTTAGAC-TAGGAATGAGCTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * **
821729 CCGACTGGAGAGGCATAATGCACAAGTC-GGGGATCGACCCGGTCCCCCTCTGCATGCTACCGGT
65 CCGACCGGAGAGGCAGAATGCACAAG-CAGGGGACCGACCCGATCCCCC-CTGCATGCTACCAAT
* *
821793 CCCGCTGTCACAACCCTCGGTCT-GGCTGGGGT
128 CCCGCTGCCACAACCCTCGGTCTAGGCT--GAT
* * * *
821825 -TTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGGAACGGGCGTACGGGCACTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
*
821889 C-AGCCAGAGAGGCAGAATGCACA
66 CGA-CCGGAGAGGCAGAATGCACA
821912 GCCGAGGAAT
Statistics
Matches: 202, Mismatches: 37, Indels: 15
0.80 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 94 0.47
159 104 0.51
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
CGACCGGAGAGGCAGAATGCACAAGCAGGGGACCGACCCGATCCCCCCTGCATGCTACCAATCCC
GCTGCCACAACCCTCGGTCTAGGCTGAT
Found at i:822040 original size:27 final size:27
Alignment explanation
Indices: 821992--822043 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
821982 CTGGTTCGAT
821992 CTTAGACTGGGAATGAACCTCCGTATC
1 CTTAGACTGGGAATGAACCTCCGTATC
822019 CTTAGACTATGGG-ATGAA-CTCCGTA
1 CTTAGAC--TGGGAATGAACCTCCGTA
822044 CTGCCTAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 14 0.61
28 5 0.22
29 4 0.17
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACCTCCGTATC
Found at i:822531 original size:26 final size:26
Alignment explanation
Indices: 822480--822531 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
822470 GGCTCAAAAT
**
822480 CTTAGACTCGGAATGAACTCTTTATG
1 CTTAGACTCGGAATGAACTCCGTATG
822506 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TCGGAATGAACTCCGTATG
822532 GCTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:822895 original size:159 final size:157
Alignment explanation
Indices: 822509--822933 Score: 432
Period size: 159 Copynumber: 2.7 Consensus size: 157
822499 CTTTATGCTT
* * * **
822509 AGACATGGAATGAACTCCGTATGGCTAAGCCAACCCATAAAACGAGCATGCGGGTGCTCAGCCAA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGG
* * * * * *
822574 TCAGAGAGGCAGAA--CATGCAAGCTGAGGACCGGCCCGATCCCCCGTGCGTGCTATCGATCTGC
66 TCGGAGAGGCAGAATGCA--CAAGCAGAGGATCGGCCCGATCCCCCGTGCGTGCTACCAATCCGC
* * *
822637 TGTCACAACCCTCGGTCTGGTCTGATCTT
129 TGCCACAACCCTCGGTCTGGTCTGAGCTC
* * * * *
822666 AGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTGAACCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCG
* * * *
822730 GCCGGAGAGGCATAATGCACAAGTCAGA-GATCGGCCCGATCCTCCTC-TGTGTGCTGCCAATCC
65 GTCGGAGAGGCAGAATGCACAAG-CAGAGGATCGGCCCGATCC-CC-CGTGCGTGCTACCAAT-C
** *
822793 CGCTGCCATTACCCTCGGTCTGG-CTGGGGCTC
126 CGCTGCCACAACCCTCGGTCTGGTCT-GAGCTC
* * * *
822825 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGGTCAGTCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGG
* *
822890 TCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCTG-TCCCCC
66 TCGGAGAGGCAGAATGCACAAGCAGAGGATCGGCCC-GATCCCCC
822934 CTACATGCTG
Statistics
Matches: 218, Mismatches: 39, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
156 1 0.00
157 82 0.38
158 22 0.10
159 111 0.51
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGG
TCGGAGAGGCAGAATGCACAAGCAGAGGATCGGCCCGATCCCCCGTGCGTGCTACCAATCCGCTG
CCACAACCCTCGGTCTGGTCTGAGCTC
Found at i:824746 original size:26 final size:26
Alignment explanation
Indices: 824717--824769 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
824707 CCGGTCTGAT
* * *
824717 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATCAACTCCGTATG
* *
824743 CTTACATTGGGGATCAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
824769 C
1 C
824770 CTAAGTCAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCGTATG
Found at i:825109 original size:26 final size:26
Alignment explanation
Indices: 825073--825123 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
825063 TCGATCTGAT
* *
825073 CTTAGACTGGGAATGGACTACGTATG
1 CTTAGAATGGGAATGAACTACGTATG
* *
825099 CTTAGAATGGGGATGAACTCCGTAT
1 CTTAGAATGGGAATGAACTACGTAT
825124 ACCTAACTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTACGTATG
Found at i:825462 original size:26 final size:26
Alignment explanation
Indices: 825424--825502 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
825414 CTAGTTCGAT
825424 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
825450 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
825476 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
825502 C
1 C
825503 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:826697 original size:159 final size:158
Alignment explanation
Indices: 826321--826698 Score: 369
Period size: 159 Copynumber: 2.4 Consensus size: 158
826311 AACTCCGTAT
* * *
826321 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGTGTGCGGGCGCTCAG
* * * * * *
826386 TCAGCCGGAGAGGCAGAATGCATAAGCCGGGGAATGGCCCAGTCCCCCCCTGCGTGCTGTTGATC
66 CCAGCCGGAGAGGCAGAATGCATAAGCCGAGGAACGACCCAGTCCCCCCAT-CGTGCTGCTGATC
826451 CTGCTGCCACAACCCTCGGTCCGGTCTGA
130 CTGCTGCCACAACCCTCGGTCCGGTCTGA
* * * * * * * *
826480 TCTTACAC-TGGGAATTAACTCCGTATGCATAAGTCAACCCACGAAAA-GAGTGTACGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-TAAAACGAGTGTGCGGGCGCTC
* ** * *
826543 AGCCTA-CCGGAGAGGCATAATGCGCA-AATTCGAGGACCGACCCGGTCCCCCTCAT-GTGCTGC
64 AGCC-AGCCGGAGAGGCAGAAT--GCATAAGCCGAGGAACGACCCAGTCCCCC-CATCGTGCTG-
* *
826605 CTG-T-CTCGCTGCCAGAACCCTCGGTCCGGT-TGGG
124 CTGATCCT-GCTGCCACAACCCTCGGTCCGGTCT-GA
*
826639 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACG-GATGTGCGGGCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAG-TGTGCGGGCG
826699 GTTAGTCGGT
Statistics
Matches: 175, Mismatches: 32, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
158 9 0.05
159 136 0.78
160 25 0.14
161 5 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGTGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCATAAGCCGAGGAACGACCCAGTCCCCCCATCGTGCTGCTGATCC
TGCTGCCACAACCCTCGGTCCGGTCTGA
Found at i:826834 original size:26 final size:26
Alignment explanation
Indices: 826798--826850 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
826788 CTGGTTCGAT
*
826798 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
* **
826824 CTTAGACTGGGGGTGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
826850 C
1 C
826851 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:827701 original size:26 final size:26
Alignment explanation
Indices: 827665--827717 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
827655 TTGGTTTGAT
* *
827665 CTTAGATTGGGAAGGAACTTCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
* *
827691 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
827717 C
1 C
827718 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:827899 original size:26 final size:26
Alignment explanation
Indices: 827861--827913 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
827851 TCGGTTCGAT
827861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
827887 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
827913 C
1 C
827914 CTAAGCGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:828700 original size:26 final size:26
Alignment explanation
Indices: 828671--828723 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
828661 TCGATCCGAT
828671 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
828697 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
828723 C
1 C
828724 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:828720 original size:322 final size:324
Alignment explanation
Indices: 828163--828744 Score: 803
Period size: 324 Copynumber: 1.8 Consensus size: 324
828153 TGCTGGTCCC
** *
828163 GCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAAC
** * * ** *
828228 CCATTAAACGGGCGTGCGGGCGCTCAGTGGATCGAAGAGGCAAAATCCACAAGGCGGGGATCGAC
66 CCAAGAAACGAGCGTGCGGGCACTCACCGGATCGAAGAGGCAAAATACACAAGGCGGGGATCGAC
* *
828293 CCGATCCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTG
131 CCGATCCCCTCTACATGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTG
* * *
828358 GGAATGAACTTCGTATGCTTAGATTGCGGATGAACTCCGTATGCCTAAGTCAACCCCCGAAACGA
196 GGAATGAACTCCGTATGCTTAGATAGCGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
828423 GCGTGCGGGCGCTCAACCGGCGAAGAGGCATAATGCTGCCGATGCCGATCTCGCTGTCGGTCTT
261 GCGTGCGGGCGCTCAACCGGCGAAGAGGCATAATGCTGCCGATGCCGATCTCGCTGTCGGTCTT
* * * *
828487 GCTGCCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAAAGAACTTCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAAC
* * * * * * *
828552 CCAAGAAATGAGCGTGCGGGCACTCAACCGG-TCGGAGAGGTAGAATACGCAAGTCGGGGATCGG
66 CCAAGAAACGAGCGTGCGGGCACTC-ACCGGATCGAAGAGGCAAAATACACAAGGCGGGGATCGA
* * * * * * * *
828616 CTCGGTCCCC-CTACGTG-TGTCGATCCTGCTGCCGTAATCCTTAGTTCGATCCGATCTTAGACT
130 CCCGATCCCCTCTACATGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACT
*
828679 GGGAATGAACTCCGTATGCTTAGACTAG-GGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
195 GGGAATGAACTCCGTATGCTTAGA-TAGCGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
828743 GA
259 GA
828745 ATGTGCAGGT
Statistics
Matches: 221, Mismatches: 35, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
322 99 0.45
323 7 0.03
324 112 0.51
325 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (324 bp):
GCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAAC
CCAAGAAACGAGCGTGCGGGCACTCACCGGATCGAAGAGGCAAAATACACAAGGCGGGGATCGAC
CCGATCCCCTCTACATGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGATAGCGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAACCGGCGAAGAGGCATAATGCTGCCGATGCCGATCTCGCTGTCGGTCTT
Found at i:829427 original size:26 final size:26
Alignment explanation
Indices: 829389--829438 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
829379 GGTTCAAAAT
829389 CTTAGACTGGGAATGAACTCCATAAG
1 CTTAGACTGGGAATGAACTCCATAAG
829415 CTTAGACAT-GGAATGAACTCCATA
1 CTTAGAC-TGGGAATGAACTCCATA
829439 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATAAG
Found at i:830369 original size:26 final size:26
Alignment explanation
Indices: 830333--830385 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
830323 CCGATCTGAT
*
830333 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
830359 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
830385 C
1 C
830386 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:831595 original size:26 final size:26
Alignment explanation
Indices: 831559--831611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
831549 CTGGTCTAAT
831559 CTTAGACTGGGCATGAAATCCGTATG
1 CTTAGACTGGGCATGAAATCCGTATG
* *
831585 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGCATGAAATCCGTATG
831611 C
1 C
831612 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGCATGAAATCCGTATG
Found at i:831932 original size:171 final size:171
Alignment explanation
Indices: 831584--832150 Score: 523
Period size: 171 Copynumber: 3.4 Consensus size: 171
831574 AAATCCGTAT
* * * * *
831584 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG-ATGCGAGCACTCAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * **
831648 CC-AGCAGGAGAGGC-GTAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTTGA
66 CCGACCA-GAGAGGCAG-AATGCACAAGCCAGGGATCAGCTCGGTCCCCCTCTGCGTGCTACTGA
* *
831711 TACCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCTAACTGGG
129 TACCGCTGTCGGTCCTACTGCCACAACCCTCGGTCTAACTGGA
* * *
831754 GCTTAGACGT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTTA
1 GCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
831818 ACCGACCAGAGAGGCAGAATGCGCAGGCCAGGGATCAGCTCGATCCCACC-CTGCGTGCTACT-A
65 GCCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGGTCCC-CCTCTGCGTGCTACTGA
* * *
831881 TTCCTGCTG-CTGGTCCTACTG-TAGCAACCCTCGGTCTAGTCT-GA
129 TACC-GCTGTC-GGTCCTACTGCCA-CAACCCTCGGTCTA-ACTGGA
* * * * *
831925 TCTTAGACTATGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
831990 CCGATCAGAGAGGCATAATGCACAAGCCAGGGATC-GACTCGGT-CCCC-CT-C-TG---C-G-T
66 CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCAG-CTCGGTCCCCCTCTGCGTGCTACTGAT
** * * * *
832045 ---GCTGTCGGTCCTGTTGCCACAACACTCGATCTGACTGGG
130 ACCGCTGTCGGTCCTACTGCCACAACCCTCGGTCTAACTGGA
* * * * *
832084 GCTTAGACATA-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCTTGCTGGCGCTCA
1 GCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
832148 GCC
65 GCC
832151 AGTCGGAGAG
Statistics
Matches: 330, Mismatches: 51, Indels: 43
0.78 0.12 0.10
Matches are distributed among these distances:
158 2 0.01
159 79 0.24
160 4 0.01
163 1 0.00
164 1 0.00
167 2 0.01
168 1 0.00
169 4 0.01
170 56 0.17
171 172 0.52
172 8 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (171 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGGTCCCCCTCTGCGTGCTACTGATA
CCGCTGTCGGTCCTACTGCCACAACCCTCGGTCTAACTGGA
Found at i:833356 original size:159 final size:158
Alignment explanation
Indices: 833001--833466 Score: 433
Period size: 158 Copynumber: 2.9 Consensus size: 158
832991 AACTCCGTAT
* * * * *
833001 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAATGACCGTACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAA
* * * *
833066 CCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGATCCCTCCTACGTGCTGTCGATCC
66 CCGATCGAAGAGGCAGAATGTGCAAGCCGAGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCC
** *
833131 TGCTGCCACAACCCTCGATCCAGTCTGA
131 CACTGCCACAACCCTCGATCCAGTCGGA
* * * * * * *
833159 TCTTAGAC-TGGGAATGAACTCCATTTGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCA
*
833223 ACCGA-CTGAAGAGGCATAATGTGCAAGCCGAGGATCGGCTCGATCCCCCTCTACGTGCTGCC-A
65 ACCGATC-GAAGAGGCAGAATGTGCAAGCCGAGGATCGGCTCGATCCCCC-CTACGTGCTGCCGA
** *
833286 GTCCCACTGCCACAACCCTC-AGTCTGGAT-GGG
128 -TCCCACTGCCACAACCCTCGA-TCCAG-TCGGA
* * * *
833318 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC-AGACACTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAG-CGCTCA
** * * *** * * * * * *
833382 GTCGACCGAAGAGGTAGAATGCATAAGCCGGGGATCGAC-CTGGTCCCCCCTGCATGCTGTCGAT
65 ACCGATCGAAGAGGCAGAATGTGCAAGCCGAGGATCGGCTC-GATCCCCCCTACGTGCTGCCGAT
* *
833446 CCTACTGCCGCAACCCTCGAT
129 CCCACTGCCACAACCCTCGAT
833467 ACGATCTGAT
Statistics
Matches: 247, Mismatches: 49, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 124 0.50
159 118 0.48
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAA
CCGATCGAAGAGGCAGAATGTGCAAGCCGAGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCC
CACTGCCACAACCCTCGATCCAGTCGGA
Found at i:833508 original size:26 final size:26
Alignment explanation
Indices: 833479--833529 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
833469 GATCTGATTG
833479 TAGACTCAGAATGAACTCTGTATGCT
1 TAGACTCAGAATGAACTCTGTATGCT
* ** *
833505 TAGATTGGGGATGAACTCTGTATGC
1 TAGACTCAGAATGAACTCTGTATGC
833530 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
TAGACTCAGAATGAACTCTGTATGCT
Found at i:834341 original size:158 final size:157
Alignment explanation
Indices: 833880--834382 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 157
833870 AACTCTGTAT
** * *
833880 GCTTAGACACAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAA
* * * * * *
833945 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCTCTTACGTGCTG-TCGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCC-CCTGCGTGCTGCT-GAT
* * ** *
834009 CTGGCTACTGCAACCCTCAATCCGGTCAGA
129 CTCGCTGC-GCAACCCTCGGTCCGCTCAGA
* * ** * * * *
834039 ACTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAATGAAAGTGGGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCA
* * * * * * *
834103 GCCGACTGGAGAGGCATAATGCACGAA-CCGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGA
65 ACCGACCGGAGAGGCAGAATGCGC-AAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGCTGA
* * *
834167 TCCCGCTGC-CACACCCTCGGTCCGACT-GGG
128 TCTCGCTGCGCA-ACCCTCGGTCCG-CTCAGA
* * * *
834197 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGACGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAA
*
834262 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCTGATCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCTGATCT
* * * *
834327 TGCTGTCGCAACCCTCGGTCTGGTCTGA
131 CGCTG-CGCAACCCTCGGTCCGCTCAGA
* *
834355 TCTTAGAC-TAGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
834383 TTAGGCTGGA
Statistics
Matches: 270, Mismatches: 62, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 24 0.09
158 138 0.51
159 106 0.39
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCTGATCT
CGCTGCGCAACCCTCGGTCCGCTCAGA
Found at i:834385 original size:26 final size:26
Alignment explanation
Indices: 834356--834408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
834346 CTGGTCTGAT
834356 CTTAGACTAGGA-ATGAACTCTGTATG
1 CTTAGACT-GGAGATGAACTCTGTATG
*
834382 CTTAGGCTGGAGATGAACTCTGTATG
1 CTTAGACTGGAGATGAACTCTGTATG
834408 C
1 C
834409 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCTGTATG
Found at i:837269 original size:26 final size:26
Alignment explanation
Indices: 837229--837281 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
837219 GGCTCAAAGT
837229 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGTAATGAACTCCATATG
*
837255 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGTAATGAACTCCATATG
837281 C
1 C
837282 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCATATG
Found at i:837598 original size:159 final size:158
Alignment explanation
Indices: 837254--837612 Score: 413
Period size: 158 Copynumber: 2.3 Consensus size: 158
837244 AACTCCATAT
837254 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGTGCTCAG
* * *
837319 CCGACCGTAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTATGTGCTATCGATCC
66 CCGACCGTAAAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCCTATGTGCTATCGATCC
** * *
837384 TGCTGCCGCAACTCTCAGTCCGGTCTGA
131 CACTGCCACAACCCTCAGTCCGGTCTGA
* * ** * * * *
837412 TCTTAGA-TTGGGAATGAACTCCGTATGCAAAAGTCAACCCACGAAA-TAAGCGTGCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAA-CGTACGGGTGCTC
* ** * * *
837475 AGCCGGCCG-AAGAGGCCTAATGCACAAGCCAGGGATTGGCCTAGTCCGCCTCTATGTGCTA-CT
64 AGCCGACCGTAA-AGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCC-CCCCTATGTGCTATC-
* *
837538 GGTCCCACTGCCACAACCCTCAGTCCGG-CTGGG
126 GATCCCACTGCCACAACCCTCAGTCCGGTCT-GA
*
837571 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
837613 AAAAAGGCAT
Statistics
Matches: 165, Mismatches: 29, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 5 0.03
158 89 0.54
159 70 0.42
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGTGCTCAG
CCGACCGTAAAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCCTATGTGCTATCGATCC
CACTGCCACAACCCTCAGTCCGGTCTGA
Found at i:837765 original size:26 final size:26
Alignment explanation
Indices: 837729--837781 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
837719 CTGGACCAAT
*
837729 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* **
837755 CTTAGATTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
837781 C
1 C
837782 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:838139 original size:26 final size:26
Alignment explanation
Indices: 838110--838162 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
838100 CCGGTCCAAT
838110 CTTAGA-ATGGAAATGAACTCCATATG
1 CTTAGACATGG-AATGAACTCCATATG
*
838136 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
838162 C
1 C
838163 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:842227 original size:32 final size:30
Alignment explanation
Indices: 842183--842292 Score: 93
Period size: 33 Copynumber: 3.5 Consensus size: 30
842173 ACTATGCTTG
*
842183 AAAAAAA-TGAAAAAGAAAAAAATGATGAAAT
1 AAAAAAAGAGAAAAAGAAAAAAATGA--AAAT
842214 AAAAAAAGAGAAAAA-ATGAAAAAATGAAAAAT
1 AAAAAAAGAGAAAAAGA--AAAAAATG-AAAAT
*
842246 GAAAAAATAGA-AAAAATAAAAAAATGAAAA-
1 -AAAAAA-AGAGAAAAAGAAAAAAATGAAAAT
*
842276 AAGAAAAAGTGAAAAAG
1 AA-AAAAAGAGAAAAAG
842293 GAGGACTCAA
Statistics
Matches: 67, Mismatches: 3, Indels: 19
0.75 0.03 0.21
Matches are distributed among these distances:
29 4 0.06
30 9 0.13
31 12 0.18
32 18 0.27
33 19 0.28
34 5 0.07
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (30 bp):
AAAAAAAGAGAAAAAGAAAAAAATGAAAAT
Found at i:842236 original size:40 final size:40
Alignment explanation
Indices: 842182--842291 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 40
842172 TACTATGCTT
**
842182 GAAAAAAATGAAAAAGAAAAAAATGATGAAATA-AAAAAA
1 GAAAAAAATGAAAAAGAAAAAAATGAAAAAATAGAAAAAA
*
842221 GAGAAAAAATGAAAAA-ATGAAAAATGAAAAAATAGAAAAAA
1 GA-AAAAAATGAAAAAGA-AAAAAATGAAAAAATAGAAAAAA
* *
842262 TAAAAAAATGAAAAA-AGAAAAAGTGAAAAA
1 GAAAAAAATGAAAAAGA-AAAAAATGAAAAA
842292 GGAGGACTCA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
39 3 0.05
40 51 0.84
41 7 0.11
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (40 bp):
GAAAAAAATGAAAAAGAAAAAAATGAAAAAATAGAAAAAA
Found at i:842292 original size:8 final size:8
Alignment explanation
Indices: 842184--842291 Score: 107
Period size: 8 Copynumber: 13.6 Consensus size: 8
842174 CTATGCTTGA
842184 AAAAAATG
1 AAAAAATG
842192 -AAAAA-G
1 AAAAAATG
842198 AAAAAAATG
1 -AAAAAATG
** *
842207 ATGAAATA
1 AAAAAATG
*
842215 AAAAAAGAG
1 AAAAAA-TG
842224 AAAAAATG
1 AAAAAATG
842232 AAAAAATG
1 AAAAAATG
842240 -AAAAATG
1 AAAAAATG
842247 AAAAAATAG
1 AAAAAAT-G
*
842256 AAAAAATA
1 AAAAAATG
842264 AAAAAATG
1 AAAAAATG
842272 AAAAAA-G
1 AAAAAATG
*
842279 AAAAAGTG
1 AAAAAATG
842287 AAAAA
1 AAAAA
842292 GGAGGACTCA
Statistics
Matches: 82, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
6 1 0.01
7 18 0.22
8 48 0.59
9 15 0.18
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:843379 original size:42 final size:42
Alignment explanation
Indices: 843297--843555 Score: 364
Period size: 42 Copynumber: 6.1 Consensus size: 42
843287 ATGATTGTCA
*
843297 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
*
843338 AGAAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
**
843380 AGGAGCAATTTAC-TTTCAAAAGTCGTGGTGCCTCCATTTAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
843421 AGGAGCAATTTAC-TTTC-AAAGTCGTGGTGCCTTTGTTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCC-----TCTGTTTAG
*
843466 AGGAGCAATTTACTTTTCAAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
* * * *
843508 AGGAGCAATTTATTTTTCCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
843550 AGGAGC
1 AGGAGC
843556 TTTGGTTAAA
Statistics
Matches: 197, Mismatches: 13, Indels: 15
0.88 0.06 0.07
Matches are distributed among these distances:
40 14 0.07
41 60 0.30
42 86 0.44
45 20 0.10
46 4 0.02
47 13 0.07
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (42 bp):
AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
Found at i:843791 original size:16 final size:16
Alignment explanation
Indices: 843769--843808 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
843759 GGTAAGTCCA
843769 ATTTTATTTTTGTTATT
1 ATTTTATTTTT-TTATT
843786 -TTTTATTTTTTTATT
1 ATTTTATTTTTTTATT
843801 ATTTTATT
1 ATTTTATT
843809 CTATATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (16 bp):
ATTTTATTTTTTTATT
Found at i:843795 original size:8 final size:8
Alignment explanation
Indices: 843770--843808 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
843760 GTAAGTCCAA
843770 TTTTATTT
1 TTTTATTT
843778 TTGTTA-TT
1 TT-TTATTT
843786 TTTTATTT
1 TTTTATTT
*
843794 TTTTATTA
1 TTTTATTT
843802 TTTTATT
1 TTTTATT
843809 CTATATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 3 0.11
8 22 0.79
9 3 0.11
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (8 bp):
TTTTATTT
Found at i:843807 original size:23 final size:24
Alignment explanation
Indices: 843770--843817 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
843760 GTAAGTCCAA
* * *
843770 TTTTATTTTTGTTATTTTTTATTT
1 TTTTATTATTGTTATTCTATATTT
843794 TTTTATTATT-TTATTCTATATTT
1 TTTTATTATTGTTATTCTATATTT
843817 T
1 T
843818 ATGTATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (24 bp):
TTTTATTATTGTTATTCTATATTT
Done.