Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 61 of 93
Found at i:8064240 original size:98 final size:98
Alignment explanation
Indices: 8064080--8064264 Score: 316
Period size: 98 Copynumber: 1.9 Consensus size: 98
8064070 AGGAAAGACT
8064080 TCCATGAGGAATGCATTGTGACACTTGAAAACAAAATACGGAACAAAGAAGCAATAAACAGCAAA
1 TCCATGAGGAATGCATTGTGACACTTGAAAACAAAATACGGAACAAAGAAGCAATAAACAGCAAA
* *
8064145 CAGAACACACTACCTTTTTTTTAAGGAAAGGTA
66 CAGAAAACAATACCTTTTTTTTAAGGAAAGGTA
* ** *
8064178 TCCATGAGGAATGCATTGTGACACTTGAAAACAAAATATGGAACGGAGAAGCAATAATCAGCAAA
1 TCCATGAGGAATGCATTGTGACACTTGAAAACAAAATACGGAACAAAGAAGCAATAAACAGCAAA
8064243 CAGAAAACAATACCTTTTTTTT
66 CAGAAAACAATACCTTTTTTTT
8064265 TTTTTTCAGA
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 81 1.00
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.22
Consensus pattern (98 bp):
TCCATGAGGAATGCATTGTGACACTTGAAAACAAAATACGGAACAAAGAAGCAATAAACAGCAAA
CAGAAAACAATACCTTTTTTTTAAGGAAAGGTA
Found at i:8068996 original size:23 final size:24
Alignment explanation
Indices: 8068968--8069018 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
8068958 TAACTTTTAA
*
8068968 AATATT-AAAAATTATT-TATTATT
1 AATATTCAAAAATAATTATATT-TT
*
8068991 AATATTCAAACATAATTATATTTT
1 AATATTCAAAAATAATTATATTTT
8069015 AATA
1 AATA
8069019 ATAATATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.25
24 14 0.58
25 4 0.17
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
AATATTCAAAAATAATTATATTTT
Found at i:8069048 original size:19 final size:18
Alignment explanation
Indices: 8069013--8069064 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
8069003 TAATTATATT
8069013 TTAATAATAATATTTAATA
1 TTAA-AATAATATTTAATA
*
8069032 TTAAAATATTATGTTAATA
1 TTAAAATAATAT-TTAATA
*
8069051 -TAAAA-AATACTTAA
1 TTAAAATAATATTTAA
8069065 AATAAAACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
16 4 0.14
17 3 0.10
18 12 0.41
19 10 0.34
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (18 bp):
TTAAAATAATATTTAATA
Found at i:8069118 original size:23 final size:23
Alignment explanation
Indices: 8069088--8069166 Score: 99
Period size: 23 Copynumber: 3.5 Consensus size: 23
8069078 ATTATTCTTT
*
8069088 ATATTATTTAATAATATATTATA
1 ATATTATTTATTAATATATTATA
*
8069111 ATATTATTTATTAACATATTA-A
1 ATATTATTTATTAATATATTATA
* *
8069133 TATATTATTTATTTAT-TAATATA
1 -ATATTATTTATTAATATATTATA
8069156 ATATTATTTAT
1 ATATTATTTAT
8069167 AAGTAAAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
22 16 0.33
23 33 0.67
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (23 bp):
ATATTATTTATTAATATATTATA
Found at i:8069149 original size:19 final size:18
Alignment explanation
Indices: 8069127--8069166 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
8069117 TTTATTAACA
*
8069127 TATTAATATATTATTTATT
1 TATTAATATAATA-TTATT
8069146 TATTAATATAATATTATT
1 TATTAATATAATATTATT
8069164 TAT
1 TAT
8069167 AAGTAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTAATATAATATTATT
Found at i:8080026 original size:14 final size:15
Alignment explanation
Indices: 8080003--8080032 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8079993 GTTATGATTC
8080003 AAAAGCAAAAAAAAA
1 AAAAGCAAAAAAAAA
8080018 AAAAG-AAAAAAAAA
1 AAAAGCAAAAAAAAA
8080032 A
1 A
8080033 CCTTGACTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.90, C:0.03, G:0.07, T:0.00
Consensus pattern (15 bp):
AAAAGCAAAAAAAAA
Found at i:8080027 original size:15 final size:15
Alignment explanation
Indices: 8080003--8080032 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8079993 GTTATGATTC
*
8080003 AAAAGCAAAAAAAAA
1 AAAAGAAAAAAAAAA
8080018 AAAAGAAAAAAAAAA
1 AAAAGAAAAAAAAAA
8080033 CCTTGACTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.90, C:0.03, G:0.07, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAAAAAA
Found at i:8081022 original size:17 final size:17
Alignment explanation
Indices: 8081002--8081058 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
8080992 ATTGTTGTTT
8081002 TAATTTATTTGTTTAAA
1 TAATTTATTTGTTTAAA
* *
8081019 TAATTTTAGGTTGTTT--T
1 TAA-TTTA-TTTGTTTAAA
8081036 TAATTTATTTGTTTAAA
1 TAATTTATTTGTTTAAA
8081053 TAATTT
1 TAATTT
8081059 TAGGTTGTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
15 6 0.19
16 4 0.12
17 12 0.38
18 4 0.12
19 6 0.19
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (17 bp):
TAATTTATTTGTTTAAA
Found at i:8081034 original size:19 final size:19
Alignment explanation
Indices: 8081010--8081068 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
8081000 TTTAATTTAT
8081010 TTGTTTAAATAATTTTAGG
1 TTGTTTAAATAATTTTAGG
* *
8081029 TTGTTT--TTAA-TTTA-T
1 TTGTTTAAATAATTTTAGG
8081044 TTGTTTAAATAATTTTAGG
1 TTGTTTAAATAATTTTAGG
8081063 TTGTTT
1 TTGTTT
8081069 TGAGAATGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
15 6 0.19
16 4 0.12
17 6 0.19
18 4 0.12
19 12 0.38
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (19 bp):
TTGTTTAAATAATTTTAGG
Found at i:8081040 original size:34 final size:34
Alignment explanation
Indices: 8080995--8081069 Score: 143
Period size: 34 Copynumber: 2.2 Consensus size: 34
8080985 TGTTGTCATT
8080995 GTTG-TTTTAATTTATTTGTTTAAATAATTTTAG
1 GTTGTTTTTAATTTATTTGTTTAAATAATTTTAG
8081028 GTTGTTTTTAATTTATTTGTTTAAATAATTTTAG
1 GTTGTTTTTAATTTATTTGTTTAAATAATTTTAG
8081062 GTTGTTTT
1 GTTGTTTT
8081070 GAGAATGGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 4 0.10
34 37 0.90
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.63
Consensus pattern (34 bp):
GTTGTTTTTAATTTATTTGTTTAAATAATTTTAG
Found at i:8099773 original size:84 final size:83
Alignment explanation
Indices: 8099628--8099801 Score: 197
Period size: 84 Copynumber: 2.1 Consensus size: 83
8099618 AGAGAACATT
* * * * *
8099628 CAATATATATGTATTTTCATGCTTCAATTAGGAAGTCTTAATGTCATACATTTGTTGGAAAGCTG
1 CAATATACATGTATTCTCATGCTTCAATCAGGAAGTCTGAATG-CATACATTTGTTAGAAAGCTG
* *
8099693 TTGATAGGAATTCTTAATG
65 TTGATAGCAATTCTGAATG
** *
8099712 CAATATACATGTATTCTCATGCTTTGATCAGGATGTCTGAATG-ATACAGATTTGTTAGAAAGCT
1 CAATATACATGTATTCTCATGCTTCAATCAGGAAGTCTGAATGCATAC--ATTTGTTAGAAAGCT
* **
8099776 TTTGATAGCTGTTCTGAATG
64 GTTGATAGCAATTCTGAATG
8099796 CAATAT
1 CAATAT
8099802 TTGTGTATTA
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
82 4 0.05
84 71 0.95
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (83 bp):
CAATATACATGTATTCTCATGCTTCAATCAGGAAGTCTGAATGCATACATTTGTTAGAAAGCTGT
TGATAGCAATTCTGAATG
Found at i:8108442 original size:4 final size:4
Alignment explanation
Indices: 8108433--8108458 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8108423 ACTTTGAGGG
8108433 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
8108459 ATACTAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:8117285 original size:30 final size:30
Alignment explanation
Indices: 8117251--8117331 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
8117241 ATAAAGTATG
8117251 TTTATAAAACATTTATTAGAT-TATGTTGTA
1 TTTATAAAACATTTATTAGATATATGTT-TA
*
8117281 TTTATAAAACA-TCATTAGATAATATGTTTA
1 TTTATAAAACATTTATTAGAT-ATATGTTTA
* * *
8117311 -ATATAACACATCTATTAGATA
1 TTTATAAAACATTTATTAGATA
8117332 ACCTGTTCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
29 17 0.40
30 20 0.47
31 6 0.14
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.43
Consensus pattern (30 bp):
TTTATAAAACATTTATTAGATATATGTTTA
Found at i:8117332 original size:30 final size:30
Alignment explanation
Indices: 8117283--8117406 Score: 110
Period size: 30 Copynumber: 4.1 Consensus size: 30
8117273 ATGTTGTATT
* *
8117283 TATAAAACATC-ATTAGATAATATGTTTAA
1 TATAACACATCTATTAGATAATATGTTCAA
**
8117312 TATAACACATCTATTAGATAACCTGTTCAA
1 TATAACACATCTATTAGATAATATGTTCAA
* * *
8117342 TATAGCACAT-TCATTAGATTAA-CTGATCAA
1 TATAACACATCT-ATTAGA-TAATATGTTCAA
* * *
8117372 TATAACATATCCCATTAGCTAATATGTTCAA
1 TATAACACAT-CTATTAGATAATATGTTCAA
8117403 TATA
1 TATA
8117407 TATACAATAT
Statistics
Matches: 77, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
29 11 0.14
30 48 0.62
31 18 0.23
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.35
Consensus pattern (30 bp):
TATAACACATCTATTAGATAATATGTTCAA
Found at i:8118091 original size:6 final size:6
Alignment explanation
Indices: 8118080--8118108 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8118070 AGTAAATAAA
8118080 AGATAG AGATAG AGATAG AGATAG AGATA
1 AGATAG AGATAG AGATAG AGATAG AGATA
8118109 ATAACATCGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.31, T:0.17
Consensus pattern (6 bp):
AGATAG
Found at i:8120196 original size:25 final size:26
Alignment explanation
Indices: 8120169--8120218 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
8120159 ACATATTTAA
*
8120169 TTTATTACATTTAT-ACAAACTAACAT
1 TTTATGAC-TTTATAACAAACTAACAT
*
8120195 TTTATGGCTTTATAACAAACTAAC
1 TTTATGACTTTATAACAAACTAAC
8120219 CTAAAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (26 bp):
TTTATGACTTTATAACAAACTAACAT
Found at i:8120790 original size:21 final size:20
Alignment explanation
Indices: 8120761--8120802 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8120751 GATTTAATAA
* *
8120761 TTGTTTAAAAGATTTATGGT
1 TTGTTTTAAAGATTTAGGGT
8120781 TTGTTTTAAAGATTTAGGGT
1 TTGTTTTAAAGATTTAGGGT
8120801 TT
1 TT
8120803 CTGATATCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.52
Consensus pattern (20 bp):
TTGTTTTAAAGATTTAGGGT
Found at i:8120839 original size:15 final size:17
Alignment explanation
Indices: 8120818--8120858 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
8120808 ATCAGGAAAA
8120818 AGAAAAAAGAA-AGAAG
1 AGAAAAAAGAAGAGAAG
8120834 -GAAAAAA-AAGAGAAG
1 AGAAAAAAGAAGAGAAG
*
8120849 ACAAAAAAGA
1 AGAAAAAAGA
8120859 GAACAAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
14 2 0.10
15 12 0.57
16 6 0.29
17 1 0.05
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (17 bp):
AGAAAAAAGAAGAGAAG
Found at i:8121723 original size:12 final size:12
Alignment explanation
Indices: 8121706--8121730 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8121696 TAATAATATA
8121706 TAAAAAAATTAT
1 TAAAAAAATTAT
8121718 TAAAAAAATTAT
1 TAAAAAAATTAT
8121730 T
1 T
8121731 TATGATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAAAAAATTAT
Found at i:8125147 original size:34 final size:34
Alignment explanation
Indices: 8125101--8125190 Score: 125
Period size: 34 Copynumber: 2.8 Consensus size: 34
8125091 TACCAAAATT
* *
8125101 TTTTTTTGTCTTTAAATACCAAAAAAAATCGTAA
1 TTTTTTTATCTTTAAATACCAAAAAAAATCATAA
*
8125135 TTTTTTTATCTTTAAATAAC-AAAAAAATCATAA
1 TTTTTTTATCTTTAAATACCAAAAAAAATCATAA
8125168 ---TTTTATCTTTAAATACCAAAAAA
1 TTTTTTTATCTTTAAATACCAAAAAA
8125191 TTGTTTTTGA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
30 16 0.31
31 5 0.10
33 12 0.24
34 18 0.35
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.41
Consensus pattern (34 bp):
TTTTTTTATCTTTAAATACCAAAAAAAATCATAA
Found at i:8125174 original size:30 final size:31
Alignment explanation
Indices: 8125103--8125190 Score: 115
Period size: 30 Copynumber: 2.8 Consensus size: 31
8125093 CCAAAATTTT
* *
8125103 TTTTTGTCTTTAAATACCAAAAAAAATCGTAA
1 TTTTTATCTTTAAATACC-AAAAAAATCATAA
*
8125135 TTTTTTTATCTTTAAATAACAAAAAAATCATAA
1 --TTTTTATCTTTAAATACCAAAAAAATCATAA
8125168 -TTTTATCTTTAAATACCAAAAAA
1 TTTTTATCTTTAAATACCAAAAAA
8125191 TTGTTTTTGA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.44
33 12 0.24
34 16 0.32
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (31 bp):
TTTTTATCTTTAAATACCAAAAAAATCATAA
Found at i:8127996 original size:93 final size:95
Alignment explanation
Indices: 8127803--8127997 Score: 240
Period size: 93 Copynumber: 2.1 Consensus size: 95
8127793 CAAAAAAATT
* * *
8127803 ATTTTTTAAAAAATTAATAAAATATTTCAATAGTTTAATAAGATATTATTTTAAAATTTAAAATT
1 ATTTTTTAAAAAATTAATAAAACATTTCAATAGTTTAAAAAGATATTATCTTAAAATTTAAAATT
* *
8127868 TTCAATAATTTGGTAGCATTAATTTCCATA
66 TTCAATAATTTGGTAGCATTAATTTCAAGA
* * *
8127898 A-TTTTTAAAGAATT-ATTAAACCTTTCAATAGTTTAAAAAGAT-TTA-CTTACAAGATTT-AAA
1 ATTTTTTAAAAAATTAATAAAACATTTCAATAGTTTAAAAAGATATTATCTTA-AA-ATTTAAAA
*
8127958 TTCTTCAATAATTTGGTAGGATTAATTT-AAGA
64 TT-TTCAATAATTTGGTAGCATTAATTTCAAGA
8127990 ATTTTTTA
1 ATTTTTTA
8127998 TTTTTTAAAA
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
91 3 0.03
92 13 0.15
93 58 0.67
94 12 0.14
95 1 0.01
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (95 bp):
ATTTTTTAAAAAATTAATAAAACATTTCAATAGTTTAAAAAGATATTATCTTAAAATTTAAAATT
TTCAATAATTTGGTAGCATTAATTTCAAGA
Found at i:8128021 original size:101 final size:97
Alignment explanation
Indices: 8127801--8128179 Score: 326
Period size: 101 Copynumber: 3.8 Consensus size: 97
8127791 TTCAAAAAAA
* * * ** * *
8127801 TTATTTTTTAAAAAATTAATAAAATATTTCAATAGTTTAATAAGATATTATTTTA-AAATTTAAA
1 TTATTTTTTAAAAAAATCATTAAACCTTCCAATAGTTTAATAAGAT-TTA-ATTACAAATTT-AA
* **
8127865 ATT-TTCAATAATTTGGTAGCATTAATTT-CCA--
63 ATTCTTCAATAATTTGGTAGGATTAATTTAAAATT
* * * * * *
8127896 -TAATTTTT-AAAGAATTATTAAACCTTTCAATAGTTTAAAAAGATTTACTTACAAGATTTAAAT
1 TTATTTTTTAAAAAAATCATTAAACCTTCCAATAGTTTAATAAGATTTAATTACAA-ATTTAAAT
8127959 TCTTCAATAATTTGGTAGGATTAATTTAAGAATTTT
65 TCTTCAATAATTTGGTAGGATTAATTTAA-AA--TT
* * *
8127995 TTATTTTTTAAAAAAATCATTAAACCTTCCAATAGTTTGATATGAGTTAATTACAATATTTAAA-
1 TTATTTTTTAAAAAAATCATTAAACCTTCCAATAGTTTAATAAGATTTAATTACAA-ATTTAAAT
* * * *
8128059 TCTTTTAATAGTTTGATTGGATTAATTTAAAAAATT
65 TC-TTCAATAATTTGGTAGGATTAATTT--AAAATT
* *
8128095 TTATTTTTTTAAACAAGGATCATTAAACCTTCCAATAGTTTAGTAAGATTTAATTACAAAATTTA
1 TTA-TTTTTTAAA-AA-AATCATTAAACCTTCCAATAGTTTAATAAGATTTAATTAC-AAATTTA
8128160 AATTC-TCTAATAATTTGGTA
62 AATTCTTC-AATAATTTGGTA
8128180 AAATTAATAA
Statistics
Matches: 229, Mismatches: 35, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
91 3 0.01
92 10 0.04
93 57 0.25
94 7 0.03
95 1 0.00
100 14 0.06
101 75 0.33
102 5 0.02
103 53 0.23
104 4 0.02
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.44
Consensus pattern (97 bp):
TTATTTTTTAAAAAAATCATTAAACCTTCCAATAGTTTAATAAGATTTAATTACAAATTTAAATT
CTTCAATAATTTGGTAGGATTAATTTAAAATT
Found at i:8128249 original size:20 final size:19
Alignment explanation
Indices: 8128226--8128266 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
8128216 AATATTTAAT
*
8128226 TTAAATAAACAAATTAAAAA
1 TTAAATAAA-AAATAAAAAA
*
8128246 TTAAATTAAAAATAAAAAA
1 TTAAATAAAAAATAAAAAA
8128265 TT
1 TT
8128267 GCCAAAAGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
TTAAATAAAAAATAAAAAA
Found at i:8130264 original size:21 final size:21
Alignment explanation
Indices: 8130239--8130292 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
8130229 TTTAGTAGTC
8130239 TTGCATGATATTTATACGTAA
1 TTGCATGATATTTATACGTAA
8130260 TTGCATGATATTTATACGTAA
1 TTGCATGATATTTATACGTAA
*
8130281 TTGCATGTTATT
1 TTGCATGATATT
8130293 GAGTTTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.30, C:0.09, G:0.15, T:0.46
Consensus pattern (21 bp):
TTGCATGATATTTATACGTAA
Found at i:8139999 original size:55 final size:55
Alignment explanation
Indices: 8139897--8140003 Score: 126
Period size: 55 Copynumber: 1.9 Consensus size: 55
8139887 TAGATTTGAT
* * * * *
8139897 TTTGAAAAATTATGAAAAAAGTAGAAATATCAATTTTTCGTTAAAATTGAATTTGC
1 TTTGAAAAATAAGGAAAAAAGTAGAAATATCAATCTTCCCTTAAAATT-AATTTGC
* * *
8139953 TTTGAAAAATAAGGAAAGAA-TTGAAATATCAATCTTCCCTTGAAATTAATT
1 TTTGAAAAATAAGGAAAAAAGTAGAAATATCAATCTTCCCTTAAAATTAATT
8140004 GATTTTTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
54 4 0.09
55 22 0.51
56 17 0.40
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (55 bp):
TTTGAAAAATAAGGAAAAAAGTAGAAATATCAATCTTCCCTTAAAATTAATTTGC
Found at i:8141989 original size:33 final size:33
Alignment explanation
Indices: 8141914--8141981 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
8141904 GACTTCTTTG
* *
8141914 AACATGT-GAACAAGGTTGTAACCCTTACAAGC
1 AACATGTGGCACAAGGTTGTAACCCTGACAAGC
*
8141946 AACATGTGGCACAAGGTTGTAATCTCTGACAAGC
1 AACATGTGGCACAAGGTTGTAA-CCCTGACAAGC
8141980 AA
1 AA
8141982 TCTTGGCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 7 0.23
33 13 0.42
34 11 0.35
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (33 bp):
AACATGTGGCACAAGGTTGTAACCCTGACAAGC
Found at i:8145568 original size:13 final size:13
Alignment explanation
Indices: 8145550--8145584 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
8145540 GTTAATGGTC
*
8145550 AAAACCTATCTTA
1 AAAACCTACCTTA
8145563 AAAACCTACCTTA
1 AAAACCTACCTTA
8145576 AAAACCTAC
1 AAAACCTAC
8145585 AAAGCAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAACCTACCTTA
Found at i:8146256 original size:109 final size:110
Alignment explanation
Indices: 8146047--8146249 Score: 306
Period size: 109 Copynumber: 1.9 Consensus size: 110
8146037 TGCACTCATA
* *
8146047 AACAAAAATATAAAATTAGGCAAATAATGCATCAAACCTCAATTTGAATACCTTTAGCAAGAATT
1 AACAAAAATATAAAATTAGACAAATAATGCATCAAACCTCAATTTGAATACCATTAGCAAGAATT
*
8146112 CTTCAATGAAAAACAAATGGACAATTTGTTAGCAATTAGAACCAC
66 CTTCAATGAAAAACAAATGAACAATTTGTTAGCAATTAGAACCAC
* *
8146157 AACAAAAA-ATAAAATTAGACAAATAATGCATCAAACCTTAATTTGACTACCATTAGCAA-AGAT
1 AACAAAAATATAAAATTAGACAAATAATGCATCAAACCTCAATTTGAATACCATTAGCAAGA-AT
8146220 TCATT-AATGAAGAAA-AAATGAACAATTTGT
65 TC-TTCAATGAA-AAACAAATGAACAATTTGT
8146250 AGGCAATCAA
Statistics
Matches: 85, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
108 1 0.01
109 71 0.84
110 13 0.15
ACGTcount: A:0.49, C:0.15, G:0.10, T:0.26
Consensus pattern (110 bp):
AACAAAAATATAAAATTAGACAAATAATGCATCAAACCTCAATTTGAATACCATTAGCAAGAATT
CTTCAATGAAAAACAAATGAACAATTTGTTAGCAATTAGAACCAC
Found at i:8146838 original size:3 final size:3
Alignment explanation
Indices: 8146830--8146873 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
8146820 AAAACTGTAA
8146830 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8146874 CATAAAACAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8147961 original size:108 final size:105
Alignment explanation
Indices: 8147829--8148035 Score: 254
Period size: 108 Copynumber: 1.9 Consensus size: 105
8147819 AAATAAAATG
* * **
8147829 TACAACAAATCAAATCAAATAAAAGTATCTCTTCTCAAAGATGCCCT-TCAATTTTTTCTATGGC
1 TACAACAAATCAAAGCAAATAAAAGTATCTCTTCTCAAAGATACCCTCT-AATTTTTT-TATAAC
* *
8147893 ATAAATGAGGTGTATCAGTAAATCAAAGCAACTAAAGGTTGGTA
64 ATAAATGAGATGTAT-AGCAAATCAAAGCAA-TAAAGGTTGGTA
* * * *
8147937 TACAATAAATCAAAGCAAATAAAAGTTTCTCTTTTCAAATATACCCTCTAATTTTTTTATAACAT
1 TACAACAAATCAAAGCAAATAAAAGTATCTCTTCTCAAAGATACCCTCTAATTTTTTTATAACAT
* * *
8148002 AAATTATATGTATAGCAAATGAAAGCAATAAAGG
66 AAATGAGATGTATAGCAAATCAAAGCAATAAAGG
8148036 CTAGTACAAT
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
105 6 0.07
106 13 0.15
107 16 0.19
108 49 0.58
109 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (105 bp):
TACAACAAATCAAAGCAAATAAAAGTATCTCTTCTCAAAGATACCCTCTAATTTTTTTATAACAT
AAATGAGATGTATAGCAAATCAAAGCAATAAAGGTTGGTA
Found at i:8148601 original size:19 final size:19
Alignment explanation
Indices: 8148577--8148614 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
8148567 AATAACTACA
8148577 ATATTTT-TTAGAAAAATAT
1 ATATTTTATTA-AAAAATAT
8148596 ATATTTTATTAAAAAATAT
1 ATATTTTATTAAAAAATAT
8148615 GTACATGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
ATATTTTATTAAAAAATAT
Found at i:8149121 original size:15 final size:16
Alignment explanation
Indices: 8149099--8149130 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8149089 TCAAACTCGA
8149099 ATTTTTTTTATTTGTC
1 ATTTTTTTTATTTGTC
8149115 ATTTTTTTTATTTGTC
1 ATTTTTTTTATTTGTC
8149131 GCTCCAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.75
Consensus pattern (16 bp):
ATTTTTTTTATTTGTC
Found at i:8149826 original size:13 final size:13
Alignment explanation
Indices: 8149792--8149830 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
8149782 TCTTTTAGTG
*
8149792 TAATTTAAAAAAA
1 TAATTTAAAAAAC
**
8149805 TAAAATAAAAAAC
1 TAATTTAAAAAAC
8149818 TAATTTAAAAAAC
1 TAATTTAAAAAAC
8149831 AAGTGAGACA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (13 bp):
TAATTTAAAAAAC
Found at i:8150561 original size:20 final size:22
Alignment explanation
Indices: 8150534--8150582 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
8150524 TAAGATAGTT
* *
8150534 TTTTTTTTTTTAAATAAGATAA
1 TTTTTTTATTAAAATAAGATAA
*
8150556 TTTTTTTATTACAAATTAGATAA
1 TTTTTTTATTA-AAATAAGATAA
8150579 TTTT
1 TTTT
8150583 AAATTTATTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (22 bp):
TTTTTTTATTAAAATAAGATAA
Found at i:8151277 original size:9 final size:10
Alignment explanation
Indices: 8151247--8151279 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
8151237 TTTTTTATTT
8151247 TTTTCACATA
1 TTTTCACATA
8151257 TTTTCACATA
1 TTTTCACATA
*
8151267 TTTT-TCATA
1 TTTTCACATA
8151276 TTTT
1 TTTT
8151280 ATATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTCACATA
Found at i:8151391 original size:23 final size:23
Alignment explanation
Indices: 8151339--8151395 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 23
8151329 TTTTATTATT
* * *
8151339 TAATTTA-TTATTTAACAACATA
1 TAATTTATTTTTTTAAAAAAATA
*
8151361 TATTTTTATTTTTTTAAAAAAATA
1 TA-ATTTATTTTTTTAAAAAAATA
8151385 TAATTTATTTT
1 TAATTTATTTT
8151396 ATTTGTTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
22 2 0.07
23 12 0.43
24 14 0.50
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (23 bp):
TAATTTATTTTTTTAAAAAAATA
Found at i:8151975 original size:2 final size:2
Alignment explanation
Indices: 8151968--8151998 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8151958 TTGTCTGAAA
8151968 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8151999 ACTCATGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8152226 original size:4 final size:4
Alignment explanation
Indices: 8152219--8152245 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8152209 TATATATATA
8152219 TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TAT
8152246 GTGATGCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:8160080 original size:37 final size:37
Alignment explanation
Indices: 8160030--8160105 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
8160020 GTATCCAAGG
8160030 CTAGGATAAAAAGCTACTGTAACCTAGTATAATTATT
1 CTAGGATAAAAAGCTACTGTAACCTAGTATAATTATT
*
8160067 CTAGGATAAAAAGCTATTGTAACCTAGTATAATTATT
1 CTAGGATAAAAAGCTACTGTAACCTAGTATAATTATT
8160104 CT
1 CT
8160106 TTTAGACACA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (37 bp):
CTAGGATAAAAAGCTACTGTAACCTAGTATAATTATT
Found at i:8165117 original size:25 final size:26
Alignment explanation
Indices: 8165070--8165127 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
8165060 GAGGAACCAT
*
8165070 ACCCTCACCTTCCCCCTCTTTCCCTC
1 ACCCTCACCTTCCCCCTCCTTCCCTC
* *
8165096 ACCCTC-CCTTTCCTCTCCTTCCCTTC
1 ACCCTCACCTTCCCCCTCCTTCCC-TC
8165122 -CCCTCA
1 ACCCTCA
8165128 TGGCACCCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 19 0.70
26 8 0.30
ACGTcount: A:0.07, C:0.60, G:0.00, T:0.33
Consensus pattern (26 bp):
ACCCTCACCTTCCCCCTCCTTCCCTC
Found at i:8166079 original size:22 final size:22
Alignment explanation
Indices: 8166051--8166095 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
8166041 ATCTGTATAT
8166051 ATTTGTATCCCTAAAATTAAGA
1 ATTTGTATCCCTAAAATTAAGA
*
8166073 ATTTGTATCCCTAGAATTAAGA
1 ATTTGTATCCCTAAAATTAAGA
8166095 A
1 A
8166096 CAAAATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (22 bp):
ATTTGTATCCCTAAAATTAAGA
Found at i:8176230 original size:14 final size:14
Alignment explanation
Indices: 8176211--8176240 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8176201 CAAGACCACC
8176211 AGTTGTATGTGAAA
1 AGTTGTATGTGAAA
8176225 AGTTGTATGTGAAA
1 AGTTGTATGTGAAA
8176239 AG
1 AG
8176241 GGAGAAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (14 bp):
AGTTGTATGTGAAA
Found at i:8182679 original size:16 final size:16
Alignment explanation
Indices: 8182658--8182689 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8182648 ATTAGATCAT
8182658 AATATTTGGTAACTAC
1 AATATTTGGTAACTAC
8182674 AATATTTGGTAACTAC
1 AATATTTGGTAACTAC
8182690 TTAGTGATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (16 bp):
AATATTTGGTAACTAC
Found at i:8186424 original size:22 final size:22
Alignment explanation
Indices: 8186398--8186441 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8186388 TGTATATTTA
*
8186398 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
8186420 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
8186442 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:8190327 original size:22 final size:22
Alignment explanation
Indices: 8190301--8190344 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8190291 TGTATATTTA
*
8190301 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
8190323 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
8190345 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:8199184 original size:21 final size:21
Alignment explanation
Indices: 8199160--8199200 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8199150 TCTTAAATTG
8199160 AAAGAATATGAACTTCATTTC
1 AAAGAATATGAACTTCATTTC
* *
8199181 AAAGAGTATGGACTTCATTT
1 AAAGAATATGAACTTCATTT
8199201 TAAGGGTCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (21 bp):
AAAGAATATGAACTTCATTTC
Found at i:8199280 original size:59 final size:58
Alignment explanation
Indices: 8199206--8199401 Score: 192
Period size: 59 Copynumber: 3.5 Consensus size: 58
8199196 CATTTTAAGG
* *
8199206 GTCGTTGAGATTTGTTCTTAAATTAAAATAGTATAAACTTAACTTCAATTACTTCAAGA
1 GTCGCTGAGACTTGTTCTTAAATTAAAATAGTATAAACTTAACTTC-ATTACTTCAAGA
* * * ** *
8199265 GTCGTTGATACTTGTTCTTAAATT-AAA-AG-A-ATA-TGGACTTCATT--TT-AAGG
1 GTCGCTGAGACTTGTTCTTAAATTAAAATAGTATAAACTTAACTTCATTACTTCAAGA
* * *
8199315 GTCGCCGAGATTTGTTCTTAAACTAAAATAGTATAAACTTAACTTCCATTACTTCAAGA
1 GTCGCTGAGACTTGTTCTTAAATTAAAATAGTATAAACTTAACTT-CATTACTTCAAGA
* * *
8199374 GTCGCTGATACTTATCCTTAAATTAAAA
1 GTCGCTGAGACTTGTTCTTAAATTAAAA
8199402 GCGTATGGAC
Statistics
Matches: 107, Mismatches: 21, Indels: 18
0.73 0.14 0.12
Matches are distributed among these distances:
50 22 0.21
51 5 0.05
52 2 0.02
53 4 0.04
54 8 0.07
55 7 0.07
56 5 0.05
57 2 0.02
58 5 0.05
59 47 0.44
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.37
Consensus pattern (58 bp):
GTCGCTGAGACTTGTTCTTAAATTAAAATAGTATAAACTTAACTTCATTACTTCAAGA
Found at i:8199336 original size:50 final size:50
Alignment explanation
Indices: 8199181--8199342 Score: 153
Period size: 50 Copynumber: 3.1 Consensus size: 50
8199171 ACTTCATTTC
*
8199181 AAAGAGTATGGACTTCATTTTAAGGGTCGTTGAGATTTGTTCTTAAATTAA
1 AAAGAATATGGACTTCATTTTAAGGGTCGTTGAGATTTGTTCTTAAATT-A
* ** * * *
8199232 AATAGTATAAACTTAACTTCAATTACTTCAAGAGTCGTTGATACTTGTTCTTAAATTA
1 AA-AG-A-ATA-TGGACTTC-ATT--TT-AAGGGTCGTTGAGATTTGTTCTTAAATTA
** *
8199290 AAAGAATATGGACTTCATTTTAAGGGTCGCCGAGATTTGTTCTTAAACTA
1 AAAGAATATGGACTTCATTTTAAGGGTCGTTGAGATTTGTTCTTAAATTA
8199340 AAA
1 AAA
8199343 TAGTATAAAC
Statistics
Matches: 87, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
50 26 0.30
51 4 0.05
52 2 0.02
53 4 0.05
54 7 0.08
55 8 0.09
56 4 0.05
57 2 0.02
58 5 0.06
59 25 0.29
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.37
Consensus pattern (50 bp):
AAAGAATATGGACTTCATTTTAAGGGTCGTTGAGATTTGTTCTTAAATTA
Found at i:8199372 original size:109 final size:109
Alignment explanation
Indices: 8199181--8199415 Score: 389
Period size: 109 Copynumber: 2.2 Consensus size: 109
8199171 ACTTCATTTC
** *
8199181 AAAGAGTATGGACTTCATTTTAAGGGTCGTTGAGATTTGTTCTTAAATTAAAATAGTATAAACTT
1 AAAGAGTATGGACTTCATTTTAAGGGTCGCCGAGATTTGTTCTTAAACTAAAATAGTATAAACTT
* * *
8199246 AACTTCAATTACTTCAAGAGTCGTTGATACTTGTTCTTAAATTA
66 AACTTCAATTACTTCAAGAGTCGCTGATACTTATCCTTAAATTA
*
8199290 AAAGAATATGGACTTCATTTTAAGGGTCGCCGAGATTTGTTCTTAAACTAAAATAGTATAAACTT
1 AAAGAGTATGGACTTCATTTTAAGGGTCGCCGAGATTTGTTCTTAAACTAAAATAGTATAAACTT
*
8199355 AACTTCCATTACTTCAAGAGTCGCTGATACTTATCCTTAAATTA
66 AACTTCAATTACTTCAAGAGTCGCTGATACTTATCCTTAAATTA
*
8199399 AAAGCGTATGGACTTCA
1 AAAGAGTATGGACTTCA
8199416 CTTCAAAGGT
Statistics
Matches: 116, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
109 116 1.00
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.36
Consensus pattern (109 bp):
AAAGAGTATGGACTTCATTTTAAGGGTCGCCGAGATTTGTTCTTAAACTAAAATAGTATAAACTT
AACTTCAATTACTTCAAGAGTCGCTGATACTTATCCTTAAATTA
Found at i:8199437 original size:50 final size:50
Alignment explanation
Indices: 8199383--8199497 Score: 133
Period size: 50 Copynumber: 2.3 Consensus size: 50
8199373 AGTCGCTGAT
* ** *
8199383 ACTTATCCTTAAATT-AAAAGCGTATGGACTTCACTTCAAAGGTCATTGAG
1 ACTTATTCTTAAATTGAAAA-AATATGGACTTCACTTCAAAGGTCATTAAG
* * ** *
8199433 ACTTATTATTGAATTGAAAAAATATGGACTTTGCTTCAAGGGTCATTAAG
1 ACTTATTCTTAAATTGAAAAAATATGGACTTCACTTCAAAGGTCATTAAG
8199483 ACTTATTCTTAAATT
1 ACTTATTCTTAAATT
8199498 TGAATAAGAA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
50 49 0.92
51 4 0.08
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.37
Consensus pattern (50 bp):
ACTTATTCTTAAATTGAAAAAATATGGACTTCACTTCAAAGGTCATTAAG
Found at i:8199924 original size:37 final size:37
Alignment explanation
Indices: 8199878--8199990 Score: 138
Period size: 37 Copynumber: 3.1 Consensus size: 37
8199868 ACTTTGATTT
* *
8199878 TTCATATCTTCACTCTCCAAGAATTATCTTCTTGATC
1 TTCAAATCTTCATTCTCCAAGAATTATCTTCTTGATC
* *
8199915 TTCAAATCTTCTTTCTCCAAGAATTATC-TCTTTGATT
1 TTCAAATCTTCATTCTCCAAGAATTATCTTC-TTGATC
* * * *
8199952 TTCAAATCTTCATTATCCATGAATTATTTTCTTAATC
1 TTCAAATCTTCATTCTCCAAGAATTATCTTCTTGATC
8199989 TT
1 TT
8199991 TATATCCACA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
36 2 0.03
37 60 0.94
38 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.04, T:0.48
Consensus pattern (37 bp):
TTCAAATCTTCATTCTCCAAGAATTATCTTCTTGATC
Found at i:8207029 original size:23 final size:22
Alignment explanation
Indices: 8206984--8207031 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
8206974 AAGTTTTAAC
*
8206984 TTTAATTTATTTAATATTAAAA
1 TTTAATTTATTTAAAATTAAAA
*
8207006 TTTAATTTTTTATAAAATTAAAA
1 TTTAATTTATT-TAAAATTAAAA
8207029 TTT
1 TTT
8207032 CATGATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTAATTTATTTAAAATTAAAA
Found at i:8207051 original size:23 final size:22
Alignment explanation
Indices: 8206984--8207051 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 22
8206974 AAGTTTTAAC
8206984 TTTAAT-TTATTTAATATTAAAA
1 TTTAATATT-TTTAATATTAAAA
* *
8207006 TTTAATTTTTTATAAAATTAAAA
1 TTTAATATTTT-TAATATTAAAA
* *
8207029 TTTCATGATTTTTAATATCAAAA
1 TTTAAT-ATTTTTAATATTAAAA
8207052 AGTAAAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
22 8 0.21
23 26 0.68
24 4 0.11
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (22 bp):
TTTAATATTTTTAATATTAAAA
Found at i:8209813 original size:15 final size:16
Alignment explanation
Indices: 8209789--8209830 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
8209779 CATATGATTC
8209789 TTTT-ATTTTTAA-TT
1 TTTTAATTTTTAACTT
8209803 TTTTAATTTTTAACTT
1 TTTTAATTTTTAACTT
*
8209819 TTGTAAATTTTT
1 TT-TTAATTTTT
8209831 GTTAATGTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 8 0.33
16 4 0.17
17 8 0.33
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTTAATTTTTAACTT
Found at i:8211588 original size:16 final size:16
Alignment explanation
Indices: 8211567--8211598 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8211557 CTGCCAGTGA
*
8211567 ATTTTTTTATCTTGAT
1 ATTTTTTTACCTTGAT
8211583 ATTTTTTTACCTTGAT
1 ATTTTTTTACCTTGAT
8211599 CTTGGTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.09, G:0.06, T:0.66
Consensus pattern (16 bp):
ATTTTTTTACCTTGAT
Found at i:8214306 original size:52 final size:52
Alignment explanation
Indices: 8214224--8214328 Score: 158
Period size: 52 Copynumber: 2.0 Consensus size: 52
8214214 CCTCAATTGG
*
8214224 CCTAATATCATACTGTAAGCTGATGGGACATTGACAATCATAAATTT-TATGA
1 CCTAATATCATACTGTAAGCTGATGAGACATTGACAATCAT-AATTTCTATGA
** *
8214276 CCTAATATCATGTTGTAGGCTGATGAGACATTGACAATCATAATTTCTATGA
1 CCTAATATCATACTGTAAGCTGATGAGACATTGACAATCATAATTTCTATGA
8214328 C
1 C
8214329 TGAAATGATA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
51 5 0.10
52 43 0.90
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Consensus pattern (52 bp):
CCTAATATCATACTGTAAGCTGATGAGACATTGACAATCATAATTTCTATGA
Found at i:8214807 original size:21 final size:22
Alignment explanation
Indices: 8214778--8214821 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
8214768 TTGAATTGGC
8214778 TCATCTTTTCAAACTTTTTTTT
1 TCATCTTTTCAAACTTTTTTTT
** *
8214800 TCAT-TTTTTGACCTTTTTTTT
1 TCATCTTTTCAAACTTTTTTTT
8214821 T
1 T
8214822 GTTTTGGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.68
Consensus pattern (22 bp):
TCATCTTTTCAAACTTTTTTTT
Found at i:8216712 original size:15 final size:16
Alignment explanation
Indices: 8216685--8216714 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8216675 ATTTAAAGTA
8216685 ATATGTAAAATAAAAT
1 ATATGTAAAATAAAAT
8216701 ATATGT-AAATAAAA
1 ATATGTAAAATAAAA
8216715 GTTTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (16 bp):
ATATGTAAAATAAAAT
Found at i:8217608 original size:30 final size:27
Alignment explanation
Indices: 8217554--8217609 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
8217544 CATTTAATAT
*
8217554 ATTTTATTAATAAAATAACATTATACG
1 ATTTTATTAATAAAATAAAATTATACG
*
8217581 ATTTTATTGATAATATATAAAATTTATAC
1 ATTTTATTAATAA-A-ATAAAA-TTATAC
8217610 ATTAACAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 12 0.50
28 1 0.04
29 5 0.21
30 6 0.25
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (27 bp):
ATTTTATTAATAAAATAAAATTATACG
Found at i:8225505 original size:33 final size:33
Alignment explanation
Indices: 8225463--8225530 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
8225453 AGGGCAAACA
*
8225463 ATAACATATGTCCCAATTAGATATGATCTCTTC
1 ATAACATATGCCCCAATTAGATATGATCTCTTC
* *
8225496 ATAACATATGCCCCAATTATATATGATTTCTTC
1 ATAACATATGCCCCAATTAGATATGATCTCTTC
8225529 AT
1 AT
8225531 CAAAAGCCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (33 bp):
ATAACATATGCCCCAATTAGATATGATCTCTTC
Found at i:8226218 original size:20 final size:21
Alignment explanation
Indices: 8226188--8226239 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
8226178 ACCTAAAATT
8226188 AATATAATAAAAATATATTAA
1 AATATAATAAAAATATATTAA
* *
8226209 AATA-AATAAAATTTTATTAA
1 AATATAATAAAAATATATTAA
8226229 AA-ATAATAAAA
1 AATATAATAAAA
8226240 CTAAAATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 1 0.04
20 23 0.82
21 4 0.14
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AATATAATAAAAATATATTAA
Found at i:8228410 original size:12 final size:12
Alignment explanation
Indices: 8228395--8228429 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
8228385 TTTTTTTTTC
*
8228395 TTATTTTCCTTT
1 TTATTTTACTTT
8228407 TTATTTTACTTT
1 TTATTTTACTTT
8228419 TTATTTTACTT
1 TTATTTTACTT
8228430 CTTTCTCTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.74
Consensus pattern (12 bp):
TTATTTTACTTT
Found at i:8228725 original size:10 final size:11
Alignment explanation
Indices: 8228705--8228735 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
8228695 TTTGATTCAT
8228705 AAAAATAAAAA
1 AAAAATAAAAA
8228716 AAAAATAAAAA
1 AAAAATAAAAA
8228727 AAAAGATAA
1 AAAA-ATAA
8228736 GATAAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (11 bp):
AAAAATAAAAA
Found at i:8230538 original size:21 final size:22
Alignment explanation
Indices: 8230507--8230553 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
8230497 ATCATTGTAA
* *
8230507 TCTCTTTCTCTTTCCCTTTCCC
1 TCTCTTTCTCTCTCCCTCTCCC
8230529 TCTC-TTCTCTCTCCCTCTCCC
1 TCTCTTTCTCTCTCCCTCTCCC
8230550 TCTC
1 TCTC
8230554 CCTCTCTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (22 bp):
TCTCTTTCTCTCTCCCTCTCCC
Found at i:8230572 original size:27 final size:27
Alignment explanation
Indices: 8230518--8230598 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
8230508 CTCTTTCTCT
*
8230518 TTCCCTTTCCCTCTCTTCTCT-CTCC-C
1 TTCCC-TTCCCTCTCTTATCTCCTCCTC
8230544 TCTCCCTCTCCCTCTCTTATCTCCTCCTC
1 T-TCCCT-TCCCTCTCTTATCTCCTCCTC
** *
8230573 TTCAATTCCCTC-CTCATCTCCTCCTC
1 TTCCCTTCCCTCTCTTATCTCCTCCTC
8230599 CATAACCTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
26 15 0.32
27 23 0.49
28 7 0.15
29 2 0.04
ACGTcount: A:0.05, C:0.53, G:0.00, T:0.42
Consensus pattern (27 bp):
TTCCCTTCCCTCTCTTATCTCCTCCTC
Found at i:8245553 original size:88 final size:88
Alignment explanation
Indices: 8245454--8245633 Score: 297
Period size: 88 Copynumber: 2.0 Consensus size: 88
8245444 AGCATAGGAT
**
8245454 AATTTATTTATTGGTCAAAATTATCCTTCCTCAAAGTTTAAACAAATTAAATTATTCATGTAATT
1 AATTTATTTATTGGTCAAAATTATCCTTCCTCAAAGTTTAAACAAATTAAATTATTCACATAATT
8245519 TTAAGGGTATAATAAAACATGTA
66 TTAAGGGTATAATAAAACATGTA
* * *
8245542 AATTTATTTATTGGTCAAAATTATCCTTCCTCGAAGTTTATACAAATTAAATTATTGACATAATT
1 AATTTATTTATTGGTCAAAATTATCCTTCCTCAAAGTTTAAACAAATTAAATTATTCACATAATT
**
8245607 TTAAGGGTATAATAGGACATGTA
66 TTAAGGGTATAATAAAACATGTA
8245630 AATT
1 AATT
8245634 CAATCCAATG
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (88 bp):
AATTTATTTATTGGTCAAAATTATCCTTCCTCAAAGTTTAAACAAATTAAATTATTCACATAATT
TTAAGGGTATAATAAAACATGTA
Found at i:8246963 original size:2 final size:2
Alignment explanation
Indices: 8246958--8246983 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8246948 AAACTAAAAA
8246958 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8246984 TATTTTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8248988 original size:18 final size:18
Alignment explanation
Indices: 8248967--8249024 Score: 53
Period size: 21 Copynumber: 2.9 Consensus size: 18
8248957 CAATAATAAG
8248967 ATAATAAATTATGCAATA
1 ATAATAAATTATGCAATA
*
8248985 ATAATAAACTATCATACAATA
1 ATAATAAA-T-T-ATGCAATA
*
8249006 ATATTAATTATTATGCAAT
1 ATAATAA--ATTATGCAAT
8249025 TAAATATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
18 8 0.25
19 1 0.03
20 7 0.22
21 14 0.44
22 1 0.03
23 1 0.03
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (18 bp):
ATAATAAATTATGCAATA
Found at i:8249186 original size:17 final size:15
Alignment explanation
Indices: 8249166--8249197 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8249156 AAACAACCAT
8249166 AATAA-ATATAAAAA
1 AATAATATATAAAAA
8249180 AATAATATATAAAAA
1 AATAATATATAAAAA
8249195 AAT
1 AAT
8249198 TAGAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (15 bp):
AATAATATATAAAAA
Found at i:8249605 original size:20 final size:20
Alignment explanation
Indices: 8249582--8249627 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
8249572 AACTTCCATT
8249582 ATAAAAATCAAAC-AAAACCC
1 ATAAAAAT-AAACAAAAACCC
* *
8249602 ATAAATATGAACAAAAACCC
1 ATAAAAATAAACAAAAACCC
8249622 A-AAAAA
1 ATAAAAA
8249628 AATCCAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.67, C:0.20, G:0.02, T:0.11
Consensus pattern (20 bp):
ATAAAAATAAACAAAAACCC
Found at i:8249939 original size:14 final size:14
Alignment explanation
Indices: 8249898--8249940 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
8249888 ACCCAGAAGC
8249898 CCCAAAACTCAAAAA
1 CCCAAAAC-CAAAAA
* **
8249913 TCCAAAAATAAAAA
1 CCCAAAACCAAAAA
8249927 CCCAAAACCAAAAA
1 CCCAAAACCAAAAA
8249941 AAATTCCCAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.65, C:0.28, G:0.00, T:0.07
Consensus pattern (14 bp):
CCCAAAACCAAAAA
Found at i:8252638 original size:2 final size:2
Alignment explanation
Indices: 8252598--8252624 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8252588 TAATCCTTAC
8252598 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8252625 ACACTCAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8254565 original size:2 final size:2
Alignment explanation
Indices: 8254558--8254586 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8254548 CAATCCCCAA
8254558 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8254587 AATCAAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8261546 original size:2 final size:2
Alignment explanation
Indices: 8261539--8261564 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8261529 GATACATTCT
8261539 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
8261565 AGTGTGTGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8265891 original size:20 final size:18
Alignment explanation
Indices: 8265845--8265891 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
8265835 TTTTTTATTC
*
8265845 ATTACTTTTTTATAACAT
1 ATTACTTTTTTAAAACAT
8265863 ATATA-TTTTTTAAAAGACAT
1 AT-TACTTTTTT-AAA-ACAT
8265883 ATTACTTTT
1 ATTACTTTT
8265892 CTCTCTTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 8 0.33
19 6 0.25
20 10 0.42
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.53
Consensus pattern (18 bp):
ATTACTTTTTTAAAACAT
Found at i:8271804 original size:16 final size:16
Alignment explanation
Indices: 8271791--8271821 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8271781 TAGATTGACT
8271791 TTAAATTTTTTTGAAA
1 TTAAATTTTTTTGAAA
*
8271807 TTAAATTTTTATGAA
1 TTAAATTTTTTTGAA
8271822 TATATATAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (16 bp):
TTAAATTTTTTTGAAA
Found at i:8272190 original size:26 final size:27
Alignment explanation
Indices: 8272156--8272207 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
8272146 TTCTAAAATT
*
8272156 TCTTGTTTTT-AGTAATTTCATACTTGA
1 TCTTGTTTTTCAATAA-TTCATACTTGA
8272183 TCTT-TTTTTCAATAATTCATACTTG
1 TCTTGTTTTTCAATAATTCATACTTG
8272208 TTCATAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.23, C:0.13, G:0.08, T:0.56
Consensus pattern (27 bp):
TCTTGTTTTTCAATAATTCATACTTGA
Found at i:8272253 original size:2 final size:2
Alignment explanation
Indices: 8272246--8272274 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8272236 GTTAAAAGCA
8272246 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8272275 GAAAGCGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8277486 original size:2 final size:2
Alignment explanation
Indices: 8277479--8277512 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8277469 ATTAAATTAG
8277479 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8277513 CAATTCTTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8278764 original size:4 final size:4
Alignment explanation
Indices: 8278755--8278819 Score: 76
Period size: 4 Copynumber: 16.2 Consensus size: 4
8278745 ATATATTGTT
* * * * *
8278755 ATAG ATAG ATAG ATAG ATAG ATAG ATGG ATGG ATGG ATAA ATTG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
*
8278803 ATAG ATAG ATAA ATAG A
1 ATAG ATAG ATAG ATAG A
8278820 ACATATAAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 53 1.00
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:8279578 original size:2 final size:2
Alignment explanation
Indices: 8279571--8279596 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8279561 TTCAATATCG
8279571 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8279597 CTTCTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8286423 original size:14 final size:14
Alignment explanation
Indices: 8286406--8286439 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
8286396 AAAACTTGAG
8286406 TTGAAAAAGTATAT
1 TTGAAAAAGTATAT
8286420 TTG-AAAAGTATAT
1 TTGAAAAAGTATAT
8286433 TTGAAAA
1 TTGAAAA
8286440 GTGTGGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (14 bp):
TTGAAAAAGTATAT
Found at i:8286426 original size:13 final size:13
Alignment explanation
Indices: 8286410--8286441 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
8286400 CTTGAGTTGA
8286410 AAAAGTATATTTG
1 AAAAGTATATTTG
8286423 AAAAGTATATTTG
1 AAAAGTATATTTG
8286436 AAAAGT
1 AAAAGT
8286442 GTGGTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (13 bp):
AAAAGTATATTTG
Found at i:8288100 original size:16 final size:17
Alignment explanation
Indices: 8288047--8288102 Score: 51
Period size: 16 Copynumber: 3.2 Consensus size: 17
8288037 TGCATGAAAT
*
8288047 AAAAAATAGAATAGGAGAA
1 AAAAAAT-G-ATAGTAGAA
* *
8288066 AAGAAAATGATTGTTGAA
1 AA-AAAATGATAGTAGAA
8288084 AAAAAATGA-AGTAGAA
1 AAAAAATGATAGTAGAA
8288100 AAA
1 AAA
8288103 CAAGATTGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
16 8 0.26
17 7 0.23
18 8 0.26
19 3 0.10
20 5 0.16
ACGTcount: A:0.64, C:0.00, G:0.20, T:0.16
Consensus pattern (17 bp):
AAAAAATGATAGTAGAA
Found at i:8299108 original size:2 final size:2
Alignment explanation
Indices: 8299101--8299125 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8299091 GCTAAAAGTA
8299101 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8299126 GAAAGTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8300211 original size:2 final size:2
Alignment explanation
Indices: 8300204--8300231 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8300194 TCGACATCAC
8300204 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8300232 CCTCTACTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8302220 original size:23 final size:24
Alignment explanation
Indices: 8302175--8302222 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
8302165 CCATTTCTCC
*
8302175 TATTCCAAACCATTTCATGTGTTA
1 TATTCCAAACCATTTCATATGTTA
*
8302199 TATTCCAAA-CATTTCTTATGTTA
1 TATTCCAAACCATTTCATATGTTA
8302222 T
1 T
8302223 GTGTTTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.59
24 9 0.41
ACGTcount: A:0.29, C:0.19, G:0.06, T:0.46
Consensus pattern (24 bp):
TATTCCAAACCATTTCATATGTTA
Found at i:8305793 original size:86 final size:87
Alignment explanation
Indices: 8305638--8305811 Score: 206
Period size: 86 Copynumber: 2.0 Consensus size: 87
8305628 TTTTACTTTA
* * * * *
8305638 AACTTTTATGCTTGTCCTAATCTAGTGTCGTACCATGTTAGAAAGCAATTAGAAAGACCTAGATG
1 AACTGTTATGCTTGTCATAATCTAGTGTCGTACAATATTAGAAAGCAATTAGAAAGACCTAGATA
* *
8305703 ATACAATAATTTAGGGAAACTC
66 ATACAAGAATTAAGGGAAACTC
* * * * * * * *
8305725 AACTGTTATGCTTGT-ATGATCTAGTTTTGTACAATATTATAAAGCAATTAGCAATATCTATATA
1 AACTGTTATGCTTGTCATAATCTAGTGTCGTACAATATTAGAAAGCAATTAGAAAGACCTAGATA
8305789 ATACAAGAATTAAGGGAAACTC
66 ATACAAGAATTAAGGGAAACTC
8305811 A
1 A
8305812 CTTATCTTAC
Statistics
Matches: 72, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
86 58 0.81
87 14 0.19
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33
Consensus pattern (87 bp):
AACTGTTATGCTTGTCATAATCTAGTGTCGTACAATATTAGAAAGCAATTAGAAAGACCTAGATA
ATACAAGAATTAAGGGAAACTC
Found at i:8317939 original size:86 final size:87
Alignment explanation
Indices: 8317820--8317992 Score: 222
Period size: 86 Copynumber: 2.0 Consensus size: 87
8317810 TTTACGTTAG
* * * * *
8317820 ACTTTTATGCTTGTCCTGATCTAGTGTTGTACCATGTTAGAAAGCAATTAGAAAGATCTAGACGA
1 ACTTTTATGCTTGTCATGATCTAGTGTTATACCATATTAGAAAACAATTAGAAAGATCTAGACAA
* *
8317885 TACAACAATTTAGGGAAGCTCA
66 TACAACAATTAAGGGAAACTCA
* * * * *
8317907 ACTTTTATGCTTGT-ATGATCTAGTTTTATACCATATTATAAAACAATTAGCAAGATCTATATAA
1 ACTTTTATGCTTGTCATGATCTAGTGTTATACCATATTAGAAAACAATTAGAAAGATCTAGACAA
*
8317971 TACAAGAATTAAGGGAAACTCA
66 TACAACAATTAAGGGAAACTCA
8317993 CTTATCTTAC
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
86 59 0.81
87 14 0.19
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (87 bp):
ACTTTTATGCTTGTCATGATCTAGTGTTATACCATATTAGAAAACAATTAGAAAGATCTAGACAA
TACAACAATTAAGGGAAACTCA
Found at i:8319547 original size:16 final size:17
Alignment explanation
Indices: 8319528--8319560 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8319518 ATTTTATAAT
*
8319528 CAAATC-TATTTAAATA
1 CAAATCATATTAAAATA
8319544 CAAATCATATTAAAATA
1 CAAATCATATTAAAATA
8319561 ATATAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (17 bp):
CAAATCATATTAAAATA
Found at i:8320207 original size:15 final size:16
Alignment explanation
Indices: 8320187--8320219 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8320177 AGTTTGATCT
*
8320187 TTATTATTTA-TAAAA
1 TTATTATTAATTAAAA
8320202 TTATTATTAATTAAAA
1 TTATTATTAATTAAAA
8320218 TT
1 TT
8320220 TAAAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATTATTAATTAAAA
Found at i:8322372 original size:22 final size:22
Alignment explanation
Indices: 8322347--8322388 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8322337 TTATGGATAT
8322347 TTTCTTC-TTTTAATTTTCTTTC
1 TTTCTTCGTTTT-ATTTTCTTTC
*
8322369 TTTCTTCGTTTTTTTTTCTT
1 TTTCTTCGTTTTATTTTCTT
8322389 ATAGCTTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTCTTCGTTTTATTTTCTTTC
Found at i:8322611 original size:2 final size:2
Alignment explanation
Indices: 8322604--8322639 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8322594 TTCGATATCA
*
8322604 AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8322640 CCTCAACTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8324927 original size:17 final size:17
Alignment explanation
Indices: 8324905--8324939 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8324895 ACATAAAGCC
*
8324905 AAAATAAATAAAACAAA
1 AAAATAAACAAAACAAA
*
8324922 AAAATAAACAAAATAAA
1 AAAATAAACAAAACAAA
8324939 A
1 A
8324940 GCAGCTCCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAATAAACAAAACAAA
Found at i:8324928 original size:13 final size:13
Alignment explanation
Indices: 8324881--8324938 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 13
8324871 AATATTTTTA
8324881 AAATAAA-AATAAT
1 AAATAAACAA-AAT
8324894 AACATAAAGCCAAAAT
1 AA-ATAAA--CAAAAT
8324910 AAATAAAACAAAA-
1 AAAT-AAACAAAAT
8324923 AAATAAACAAAAT
1 AAATAAACAAAAT
8324936 AAA
1 AAA
8324939 AGCAGCTCCG
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
12 8 0.21
13 9 0.23
14 10 0.26
15 2 0.05
16 8 0.21
17 2 0.05
ACGTcount: A:0.76, C:0.09, G:0.02, T:0.14
Consensus pattern (13 bp):
AAATAAACAAAAT
Found at i:8326111 original size:44 final size:44
Alignment explanation
Indices: 8326051--8326211 Score: 164
Period size: 44 Copynumber: 3.7 Consensus size: 44
8326041 TCTCAATAAA
* * *
8326051 AGGCTCAACAATTTTTGAAAAATAAGTAAAGCTTCTT-TAAATAG
1 AGGCTCAATAACTTTTGAAAAATAAATAAAGC-TCTTATAAATAG
*
8326095 AGGCTCAATAACTTTTGAAAAATAAATAAGGCTCTTATAAATAG
1 AGGCTCAATAACTTTTGAAAAATAAATAAAGCTCTTATAAATAG
* * * * *
8326139 AAGCTCAATTACTTTTGAAAAATAAAT-AAGACTCCTCTAAACAG
1 AGGCTCAATAACTTTTGAAAAATAAATAAAG-CTCTTATAAATAG
** ** *
8326183 AGGCTTGATGCCTTTTTAAAAATAAATAA
1 AGGCTCAATAACTTTTGAAAAATAAATAA
8326212 GACTTTTTAA
Statistics
Matches: 98, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
43 6 0.06
44 91 0.93
45 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.30
Consensus pattern (44 bp):
AGGCTCAATAACTTTTGAAAAATAAATAAAGCTCTTATAAATAG
Found at i:8334521 original size:2 final size:2
Alignment explanation
Indices: 8334514--8334549 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
8334504 TTGGACATCA
* *
8334514 AT AT AT AT AA AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8334550 CCCTCTACTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:8339053 original size:2 final size:2
Alignment explanation
Indices: 8339046--8339088 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
8339036 AATTGAATTC
*
8339046 AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8339087 AT
1 AT
8339089 CTACAATTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8339815 original size:86 final size:87
Alignment explanation
Indices: 8339645--8339820 Score: 248
Period size: 86 Copynumber: 2.0 Consensus size: 87
8339635 TGTTTTACTT
*
8339645 TCAACTTTTATGCTTGCCCTGATCTAGTGTTGTACCATGTTAGAAAGCAATTAGAAAGATCTAGA
1 TCAACTTTTATGCTTGCCCTGATCTAGTGTTGTACCATATTAGAAAGCAATTAGAAAGATCTAGA
*
8339710 CAATACAATAATTTAGGGAAGC
66 CAATACAATAATTTAGGGAAAC
* * * * *
8339732 TCAACTTTTATGCTTG-TCTGATCTAGTTTTGTACCATATTATAAAGCAATTAGCAAGATCTATA
1 TCAACTTTTATGCTTGCCCTGATCTAGTGTTGTACCATATTAGAAAGCAATTAGAAAGATCTAGA
* *
8339796 TAATTCAATAA-TTAGGGGAAAC
66 CAATACAATAATTTA-GGGAAAC
8339818 TCA
1 TCA
8339821 CTTATGTTAC
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
85 3 0.04
86 60 0.76
87 16 0.20
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (87 bp):
TCAACTTTTATGCTTGCCCTGATCTAGTGTTGTACCATATTAGAAAGCAATTAGAAAGATCTAGA
CAATACAATAATTTAGGGAAAC
Found at i:8343594 original size:15 final size:16
Alignment explanation
Indices: 8343576--8343608 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8343566 TGCCAACAAG
8343576 GATAAGGCTGAC-AGA
1 GATAAGGCTGACGAGA
*
8343591 GATAGGGCTGACGAGA
1 GATAAGGCTGACGAGA
8343607 GA
1 GA
8343609 AAAAGGAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.36, C:0.12, G:0.39, T:0.12
Consensus pattern (16 bp):
GATAAGGCTGACGAGA
Found at i:8350008 original size:22 final size:23
Alignment explanation
Indices: 8349983--8350025 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
8349973 TTATAGATGT
8349983 TTTCTTC-TTTTGGTTTTCTTTC
1 TTTCTTCGTTTTGGTTTTCTTTC
**
8350005 TTTCTTCGTTTTTTTTTTCTT
1 TTTCTTCGTTTTGGTTTTCTT
8350026 GTAGCTTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.00, C:0.16, G:0.07, T:0.77
Consensus pattern (23 bp):
TTTCTTCGTTTTGGTTTTCTTTC
Found at i:8350962 original size:10 final size:10
Alignment explanation
Indices: 8350947--8350980 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
8350937 TAATCAATTG
8350947 ATTTTTTAAA
1 ATTTTTTAAA
8350957 ATTTTTTAAA
1 ATTTTTTAAA
8350967 A-TTTTTAAA
1 ATTTTTTAAA
8350976 ATTTT
1 ATTTT
8350981 CAAGAATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.39
10 14 0.61
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
ATTTTTTAAA
Found at i:8350971 original size:9 final size:9
Alignment explanation
Indices: 8350949--8350980 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
8350939 ATCAATTGAT
8350949 TTTTTAAAA
1 TTTTTAAAA
8350958 TTTTTTAAAA
1 -TTTTTAAAA
8350968 TTTTTAAAA
1 TTTTTAAAA
8350977 TTTT
1 TTTT
8350981 CAAGAATGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:8364066 original size:160 final size:158
Alignment explanation
Indices: 8363715--8365132 Score: 941
Period size: 160 Copynumber: 8.9 Consensus size: 158
8363705 AAGCATTAAA
* * * * * * * * *
8363715 TGAAAAATTTGCAATTTATATTTGTTTAGAACTTTTTATGTCGTTAAAGGGAAAAAATATAAATT
1 TGAAAAAGTTACAATTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGGAAAAATTAT-AATT
* * * * * * * * ***
8363780 TACAGTTATTGTTCTATTTTAACAATTTTGATAACTTCAATATATGATATTAAACTAGTATGAAT
65 TGCAATTATTATT-TGTTTTAACAATTTAGATAGCTT-AATACATGATATTAAACTTGTCCAAAT
* * * * **
8363845 GATTGAACTTGGTTT-AATAGCTACATATGTG
128 AATTGAACTTGATTTCCATA-ATTGATATGTG
*
8363876 TGAAAAAGTTACAATTTATATTTGTTTAGGACTTTTTGTGCCATTAAAAGGAAAAATTATAATTA
1 TGAAAAAGTTACAATTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGGAAAAATTATAATT-
* * * * * *
8363941 TGCAGTTATTATTTATTATAACAGTTTAGATAGTTTAAATACATAATATTAAACTTGTCCAAATA
65 TGCAATTATTATTTGTTTTAACAATTTAGATAGCTT-AATACATGATATTAAACTTGTCCAAATA
*
8364006 ATTAAACTTGATTTCCATAATTGATATGTG
129 ATTGAACTTGATTTCCATAATTGATATGTG
* * * * * **
8364036 TAAAAAAATTACAATTTATATTTTTTTAGGACTTTTTGTGCCCTTAAAAGGTAAAAAAGA-AAGT
1 TGAAAAAGTTACAATTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGG-AAAAATTATAA-T
*
8364100 TTGCAATTATGT-TTTGTTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTCTAAA
64 TTGCAATTAT-TATTTGTTTTAACAATTTAGATAGCTT-AATACATGATATTAAACTTGTCCAAA
* *
8364164 CAATTGAACTT-AGTTTCCATTATTGATATGTG
127 TAATTGAACTTGA-TTTCCATAATTGATATGTG
* * * * * ** ** * *
8364196 TGAAACAGTTATAGTTTCTATTTGTTTATAACTTTTTGTGCCATTAATGGGCAAAATTGTAATTA
1 TGAAAAAGTTACAATTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGGAAAAATTATAATT-
* * * * *
8364261 TTCATTTATTATTTTGTTTTAACAATTTAGATAGCCTAAATAAATGATACTAAACTTGTCCAAAT
65 TGCAATTATTA-TTTGTTTTAACAATTTAGATAG-CTTAATACATGATATTAAACTTGTCCAAAT
* * * *
8364326 AATTAAACTTGGTTTCTATGATT-ACTATGTG
128 AATTGAACTTGATTTCCATAATTGA-TATGTG
** * * *** **
8364357 TGAAAAAGTTATGATTTATGTCTATTTAGGAC-TTTTGTGCTGCTAAAAGGAAAAAAAATGCAAA
1 TGAAAAAGTTACAATTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGGAAAAATTAT---AA
* * * * * *
8364421 TTTGCAATTATTGTTTTGTTTTAATAGTTTAAATAGCTT--TA-GTGATATT-AACTTGTCCCAA
63 TTTGCAATTATT-ATTTGTTTTAACAATTTAGATAGCTTAATACATGATATTAAACTTGTCCAAA
* * * * *
8364482 TTATTGAACTTGGTTTTCACAGTTGATATGTG
127 TAATTGAACTTGATTTCCATAATTGATATGTG
* * * * * * * * * **
8364514 CGAAAAAGTTGCATTTTATGTTTGTTCAAGACATTTTGTGTCGTTAAAAGGCAAAATTGCAAGTT
1 TGAAAAAGTTACAATTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGGAAAAATTATAA-TT
* * * * * * * * *
8364579 TACAGTTATTGTTCTATTTTAATAATTTAGATAGCTTCGATATAAGATATTAAACTTATCCAAAT
65 TGCAATTATTATT-TGTTTTAACAATTTAGATAGCTT-AATACATGATATTAAACTTGTCCAAAT
* ** * *
8364644 AATTGAACTTGGTTTGTACAATTGATATATG
128 AATTGAACTTGATTTCCATAATTGATATGTG
*** * * * *
8364675 TGAAAAAGTTATGGTTTATGTTTGTTTAGGACTTTTTATACCATTAAAAGGCAAAATTGTAA-TT
1 TGAAAAAGTTACAATTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGGAAAAATTATAATTT
* * * * * * * *
8364739 GCACTTACTATTCTATTTTAACAATTTAGATAACCTAAATACAAT-ATATTAAACTTTTTCGAAT
66 GCAATTATTATT-TGTTTTAACAATTTAGAT-AGCTTAATAC-ATGATATTAAACTTGTCCAAAT
* * * * * *
8364803 GATTGAA-TTTAGTTTTCACAATTGATATTTA
128 AATTGAACTTGA-TTTCCATAATTGATATGTG
* ** * *
8364834 TGAAAAAGTTGCGTTTTATGTTTGTTT-GAGACTTTTTGTGTCAGT-AAAGGTAAAAATGTA-AA
1 TGAAAAAGTTACAATTTATGTTTGTTTAG-GACTTTTTGTGCCATTAAAAGG-AAAAAT-TATAA
* * * * * * *
8364896 TTTACAATTATTGTTTTGTTTTAATAGTTTAAATAGCTTTAATATATGATATTAAACTTGTCTAA
63 TTTGCAATTATT-ATTTGTTTTAACAATTTAGATAGC-TTAATACATGATATTAAACTTGTCCAA
* * **
8364961 ATGATTGAACTTG-GTTCCACT-ATTGATATGCA
126 ATAATTGAACTTGATTTCCA-TAATTGATATGTG
** * *
8364993 TGAAAAAGTTATTATTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAGGGCAAAAA-TATAATT
1 TGAAAAAGTTACAATTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGG-AAAAATTATAATT
* * * * * * * *
8365057 TGGTAGTTATAATTCTCTTTTAATAGTTTAAATAGGTTTAATACATGAT-TTCAAACTTGTCCAA
65 T-GCAATTATTATT-TGTTTTAACAATTTAGATA-GCTTAATACATGATATT-AAACTTGTCCAA
8365121 ATAATTGAACTT
126 ATAATTGAACTT
8365133 AGTTTTCACG
Statistics
Matches: 990, Mismatches: 222, Indels: 91
0.76 0.17 0.07
Matches are distributed among these distances:
155 4 0.00
156 30 0.03
157 57 0.06
158 36 0.04
159 185 0.19
160 385 0.39
161 260 0.26
162 29 0.03
163 4 0.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (158 bp):
TGAAAAAGTTACAATTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGGAAAAATTATAATTT
GCAATTATTATTTGTTTTAACAATTTAGATAGCTTAATACATGATATTAAACTTGTCCAAATAAT
TGAACTTGATTTCCATAATTGATATGTG
Found at i:8364395 original size:320 final size:319
Alignment explanation
Indices: 8363728--8365140 Score: 1097
Period size: 320 Copynumber: 4.4 Consensus size: 319
8363718 AAAATTTGCA
* * * * * * * * * * * * *
8363728 ATTTATATTTGTTTAGAACTTTTTATGTCGTTAAAGGGAAAAAATATAAATTTACAGTTATTGTT
1 ATTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAAGGCAAAAA-AGAAATTTGCAATTACTATT
* * * * * * * * *
8363793 CTATTTTAACAATTTTGATAACTTCAATATATGATATTAAACTAGTATGAATGATTGAACTT-GG
65 CTGTTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTCTAAATAATTGAACTTAGT
* ** * *
8363857 TTTAATAGCTACATATGTGTGAAAAAGTTACAATTTATATTTGTTTAGGACTTTTTGTGCCATTA
130 TTTCATAG-TTGATATGTGTGAAAAAGTTACAGTTTATATTTGTTTA-AACTTTTTGTGCCATTA
* * * * * * * *
8363922 AAAGGAAAAATTATAATTATGCAGTTATTA-TTTATTATAACAGTTTAGATAGTTTAAATACATA
193 AAAGGCAAAATTGTAATT-TACAGTTATTATTTTATTTTAACAATTTAGATAGCTTAAATAAATG
* * * **
8363986 ATATTAAACTTGTCCAAATAATTAAACTTGATTTCCATAATTGATATGTGTAAAAAAATTACA
257 ATATTAAACTTGTCCAAATAATTAAACTTGGTTTCCATAATTGATATGTGTGAAAAAGTTATG
* * * * * *
8364049 ATTTATATTTTTTTAGGACTTTTTGTGCCCTTAAAAGGTAAAAAAGAAAGTTTGCAATTA-TGTT
1 ATTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAAGGCAAAAAAGAAA-TTTGCAATTACTATT
* *
8364113 TTGTTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTCTAAACAATTGAACTTAGT
65 CTGTTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTCTAAATAATTGAACTTAGT
* * * *
8364178 TTCCATTA-TTGATATGTGTGAAACAGTTATAGTTTCTATTTGTTTATAACTTTTTGTGCCATTA
130 TTTCA-TAGTTGATATGTGTGAAAAAGTTACAGTTTATATTTGTTTA-AACTTTTTGTGCCATTA
** * * * *
8364242 ATGGGCAAAATTGTAATTATTCATTTATTATTTTGTTTTAACAATTTAGATAGCCTAAATAAATG
193 AAAGGCAAAATTGTAATT-TACAGTTATTATTTTATTTTAACAATTTAGATAGCTTAAATAAATG
* * *
8364307 ATACTAAACTTGTCCAAATAATTAAACTTGGTTTCTATGATT-ACTATGTGTGAAAAAGTTATG
257 ATATTAAACTTGTCCAAATAATTAAACTTGGTTTCCATAATTGA-TATGTGTGAAAAAGTTATG
* *** * * *
8364370 ATTTATGTCTATTTAGGAC-TTTTGTGCTGCTAAAAGGAAAAAAAATGCAAATTTGCAATTATTG
1 ATTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAAGG-CAAAAAA-G-AAATTTGCAATTACTA
* * * * * ** * *
8364434 TTTTGTTTTAATAGTTTAAATAGCTT---TA-GTGATATT-AACTTGTCCCAATTATTGAACTTG
63 TTCTGTTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTCTAAATAATTGAACTTA
* * * * * * * * *
8364494 GTTTTCACAGTTGATATGTGCGAAAAAGTTGCATTTTATGTTTGTTCAAGACATTTTGTGTCGTT
128 GTTTTCATAGTTGATATGTGTGAAAAAGTTACAGTTTATATTTGTTTAA-ACTTTTTGTGCCATT
* * * * **
8364559 AAAAGGCAAAATTGCAAGTTTACAGTTATTGTTCTATTTTAATAATTTAGATAGCTTCGATATAA
192 AAAAGGCAAAATTGTAA-TTTACAGTTATTATTTTATTTTAACAATTTAGATAGCTTAAATA-AA
* * ** * *
8364624 -GATATTAAACTTATCCAAATAATTGAACTTGGTTTGTACAATTGATATATGTGAAAAAGTTATG
255 TGATATTAAACTTGTCCAAATAATTAAACTTGGTTTCCATAATTGATATGTGTGAAAAAGTTATG
* * * * ** * *
8364688 GTTTATGTTTGTTTAGGACTTTTTATACCATTAAAAGGCAAAATTGTAA-TTGCACTTACTATTC
1 ATTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAAGGCAAAAAAGAAATTTGCAATTACTATTC
* * * * * * * *
8364752 TATTTTAACAATTTAGATAACCTAAATACAAT-ATATTAAACTT-TTTCGAATGATTGAATTTAG
66 TGTTTTAACAATTTAGATAGCTTCAATAC-ATGATATTAAACTTGTCT-AAATAATTGAACTTAG
* * * * * * * * *
8364815 TTTTCACAATTGATATTTATGAAAAAGTTGC-GTTTTATGTTTGTTTGAGACTTTTTGTGTCAGT
129 TTTTCATAGTTGATATGTGTGAAAAAGTTACAG-TTTATATTTGTTT-AAACTTTTTGTGCCATT
* * * * * * * * * *
8364879 -AAAGGTAAAAATGTAAATTTACAATTATTGTTTTGTTTTAATAGTTTAAATAGCTTTAATATAT
192 AAAAGGCAAAATTGT-AATTTACAGTTATTATTTTATTTTAACAATTTAGATAGCTTAAATAAAT
* * * ** *
8364943 GATATTAAACTTGTCTAAATGATTGAACTTGG-TTCCACT-ATTGATATGCATGAAAAAGTTATT
256 GATATTAAACTTGTCCAAATAATTAAACTTGGTTTCCA-TAATTGATATGTGTGAAAAAGTTATG
* * * *
8365006 ATTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAGGGCAAAAATA-TAATTTGGTAGTTA-TAA
1 ATTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAAGGCAAAAA-AGAAATTT-GCAATTACT-A
* * * * * * *
8365069 TTCTCTTTTAATAGTTTAAATAGGTTTAATACATGAT-TTCAAACTTGTCCAAATAATTGAACTT
63 TTCTGTTTTAACAATTTAGATAGCTTCAATACATGATATT-AAACTTGTCTAAATAATTGAACTT
8365133 AGTTTTCA
127 AGTTTTCA
8365141 CGGTTGATGT
Statistics
Matches: 876, Mismatches: 182, Indels: 69
0.78 0.16 0.06
Matches are distributed among these distances:
315 28 0.03
316 2 0.00
317 3 0.00
318 256 0.29
319 115 0.13
320 278 0.32
321 153 0.17
322 13 0.01
323 28 0.03
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (319 bp):
ATTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAAGGCAAAAAAGAAATTTGCAATTACTATTC
TGTTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTCTAAATAATTGAACTTAGTT
TTCATAGTTGATATGTGTGAAAAAGTTACAGTTTATATTTGTTTAAACTTTTTGTGCCATTAAAA
GGCAAAATTGTAATTTACAGTTATTATTTTATTTTAACAATTTAGATAGCTTAAATAAATGATAT
TAAACTTGTCCAAATAATTAAACTTGGTTTCCATAATTGATATGTGTGAAAAAGTTATG
Found at i:8365080 original size:479 final size:477
Alignment explanation
Indices: 8363729--8365137 Score: 1244
Period size: 479 Copynumber: 2.9 Consensus size: 477
8363719 AAATTTGCAA
** * * * * * * * * *
8363729 TTTATATTTGTTTAGAACTTTTTATGTCGTTAAAGGGAAAAAATATAAATT-TACAGTTATTGTT
1 TTTATATTTGTTTAGAACTTTTTATACCATTAAAAGGCAAAATTGT-AATTATGCACTTACTATT
* * * * * * *** * *
8363793 CTATTTTAACAATTTTGATAACTTCAATATATGATATTAAACTAGTATGAATGATTGAACTTGGT
65 CTATTTTAACAATTTAGATAACCTAAATAAATGATACTAAACTTGTCCAAATAATTAAACTTGGT
* * ** * * * *
8363858 TT-AATAGCTACATATGTGTGAAAAAGTTACAATTTATATTTGTTTAGGACTTTTTGTGCCATTA
130 TTCTACAATTAC-TATGTATGAAAAAGTTACGATTTATGTTTGTTTAGGACTTTTTGTG-CAGTA
* * * * * *
8363922 AAAGGAAAAAT-TATAATTATGCAGTTATT-ATTTATTATAACAGTTTAGATAG-TTTAAATACA
193 AAAGGAAAAATGTA-AATT-TGCAATTATTGTTTTGTTTTAATAGTTTAAATAGCTTT-AATA-A
* * * * *
8363984 TAATATTAAACTTGTCCAAATAATTAAACTTGATTTCCA-TAATTGATATGTGTAAAAAAATTAC
254 TGATATTAAACTTGTCCAAATAATTGAACTTG-GTTCCACT-ATTGATATGTGTGAAAAAGTTA-
* * * * * *
8364048 AATTTATATTTTTTTAGGACTTTTTGTGCCCTTAAAAGGTAAAAA-AGAAAGTTTGCAATTATGT
316 TATTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGGCAAAAATA-AAAGTTTGCAGTTATGT
* * * * *
8364112 TTTGTTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTCTAAACAATTGAACTTAG
380 TCTATTTTAATAATTTAGATAGCTTCAATACATGATATTAAACTTGTCCAAATAATTGAACTTAG
** * *
8364177 TTTCCATTATTGATATGTGTGAAACAGTTATAG
445 TTTCCACAATTGATATATGTGAAAAAGTTATAG
* * * * ** * * * *
8364210 TTTCTATTTGTTTATAACTTTTTGTGCCATTAATGGGCAAAATTGTAATTATTCATTTATTATTT
1 TTTATATTTGTTTAGAACTTTTTATACCATTAAAAGGCAAAATTGTAATTATGCACTTACTATTC
* *
8364275 TGTTTTAACAATTTAGATAGCCTAAATAAATGATACTAAACTTGTCCAAATAATTAAACTTGGTT
66 TATTTTAACAATTTAGATAACCTAAATAAATGATACTAAACTTGTCCAAATAATTAAACTTGGTT
** * * * * *
8364340 TCTATGATTACTATGTGTGAAAAAGTTATGATTTATGTCTATTTAGGAC-TTTTGTGCTGCTAAA
131 TCTACAATTACTATGTATGAAAAAGTTACGATTTATGTTTGTTTAGGACTTTTTGTGCAG-TAAA
* *
8364404 AGGAAAAAAAATGCAAATTTGCAATTATTGTTTTGTTTTAATAGTTTAAATAGC-TT--TAGTGA
195 AGG---AAAAATGTAAATTTGCAATTATTGTTTTGTTTTAATAGTTTAAATAGCTTTAATAATGA
* * * *
8364466 TATT-AACTTGTCCCAATTATTGAACTTGGTTTTCAC-AGTTGATATGTGCGAAAAAGTTGCAT-
257 TATTAAACTTGTCCAAATAATTGAACTTGG-TTCCACTA-TTGATATGTGTGAAAAAGTT--ATA
* * * * * * ** *
8364528 TTTATGTTTGTTCAAGACATTTTGTGTCGTTAAAAGGCAAAATTGCAAGTTTACAGTTATTGTTC
318 TTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGGCAAAAATAAAAGTTTGCAGTTA-TGTTC
* * * * *
8364593 TATTTTAATAATTTAGATAGCTTCGATATAAGATATTAAACTTATCCAAATAATTGAACTTGGTT
382 TATTTTAATAATTTAGATAGCTTCAATACATGATATTAAACTTGTCCAAATAATTGAACTTAGTT
** *
8364658 TGTACAATTGATATATGTGAAAAAGTTATGG
447 TCCACAATTGATATATGTGAAAAAGTTATAG
* *
8364689 TTTATGTTTGTTTAGGACTTTTTATACCATTAAAAGGCAAAATTGTAA-T-TGCACTTACTATTC
1 TTTATATTTGTTTAGAACTTTTTATACCATTAAAAGGCAAAATTGTAATTATGCACTTACTATTC
* * * * * * * *
8364752 TATTTTAACAATTTAGATAACCTAAATACAAT-ATATTAAACTTTTTCGAATGATTGAATTTAGT
66 TATTTTAACAATTTAGATAACCTAAATA-AATGATACTAAACTTGTCCAAATAATTAAACTTGGT
* * *
8364816 TT-TCACAATTGA-TATTTATGAAAAAGTTGCGTTTTATGTTTGTTT-GAGACTTTTTGTGTCAG
130 TTCT-ACAATT-ACTATGTATGAAAAAGTTACGATTTATGTTTGTTTAG-GACTTTTTGTG-CAG
*
8364878 T-AAAGGTAAAAATGTAAATTTACAATTATTGTTTTGTTTTAATAGTTTAAATAGCTTTAATATA
191 TAAAAGG-AAAAATGTAAATTTGCAATTATTGTTTTGTTTTAATAGTTTAAATAGCTTTAATA-A
* * **
8364942 TGATATTAAACTTGTCTAAATGATTGAACTTGGTTCCACTATTGATATGCATGAAAAAGTTATTA
254 TGATATTAAACTTGTCCAAATAATTGAACTTGGTTCCACTATTGATATGTGTGAAAAAGTTA-TA
* * * * *
8365007 TTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAGGGCAAAAATATAA-TTTGGTAGTTATAATT
318 TTTATGTTTGTTTAGGACTTTTTGTGCCATTAAAAGGCAAAAATAAAAGTTT-GCAGTTAT-GTT
* * * * *
8365071 CTCTTTTAATAGTTTAAATAGGTTTAATACATGAT-TTCAAACTTGTCCAAATAATTGAACTTAG
381 CTATTTTAATAATTTAGATAGCTTCAATACATGATATT-AAACTTGTCCAAATAATTGAACTTAG
8365135 TTT
445 TTT
8365138 TCACGGTTGA
Statistics
Matches: 744, Mismatches: 151, Indels: 68
0.77 0.16 0.07
Matches are distributed among these distances:
475 46 0.06
476 4 0.01
477 102 0.14
478 109 0.15
479 261 0.35
480 44 0.06
481 133 0.18
482 14 0.02
483 30 0.04
484 1 0.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (477 bp):
TTTATATTTGTTTAGAACTTTTTATACCATTAAAAGGCAAAATTGTAATTATGCACTTACTATTC
TATTTTAACAATTTAGATAACCTAAATAAATGATACTAAACTTGTCCAAATAATTAAACTTGGTT
TCTACAATTACTATGTATGAAAAAGTTACGATTTATGTTTGTTTAGGACTTTTTGTGCAGTAAAA
GGAAAAATGTAAATTTGCAATTATTGTTTTGTTTTAATAGTTTAAATAGCTTTAATAATGATATT
AAACTTGTCCAAATAATTGAACTTGGTTCCACTATTGATATGTGTGAAAAAGTTATATTTATGTT
TGTTTAGGACTTTTTGTGCCATTAAAAGGCAAAAATAAAAGTTTGCAGTTATGTTCTATTTTAAT
AATTTAGATAGCTTCAATACATGATATTAAACTTGTCCAAATAATTGAACTTAGTTTCCACAATT
GATATATGTGAAAAAGTTATAG
Found at i:8365162 original size:318 final size:316
Alignment explanation
Indices: 8363871--8365273 Score: 1054
Period size: 318 Copynumber: 4.4 Consensus size: 316
8363861 ATAGCTACAT
* * ** * * *
8363871 ATGTGTGAAAAAGTTACAATTTATATTTGTTTAGGACTTTTTGTGCCATTAAAAGG-AAAAAT-T
1 ATGTATGAAAAAGTTGCGTTTTATGTTTGTTTA-GACTTTTTGTGTCAGTAAAAGGCAAAAATGT
* * * * * * * *
8363934 ATAATTATGCAGTTATTATT-TATTATAACAGTTTAGATAG-TTTAAATACATAATATTAAACTT
65 A-AATT-TACAATTATTGTTCTATTTTAATAATTTAGATAGCTTT-AATATATGATATTAAACTT
* * * * * ** * * *
8363997 GTCCAAATAATTAAACTTGATTTCCA-TAATTGATATGTGTAAAAAAATTACAATTTATATTTTT
127 GTCCAAATAATTGAACTTGGTTTCTACT-ATTGATATGTGTGAAAAAGTTATGATTTATGTCTGT
* * * * * * * *
8364061 TTAGGACTTTTTGTGCCCTTAAAAGGTAAAAA-AGAAAGTTTGCAATTATGTTTTGTTTTAACAA
191 TTAGGACTTTTTGTGCCATTAAAAGGCAAAAATA-TAA-TTTGCAATTATATTCTATTTTAATAG
* * * * * *
8364125 TTTAGATAGCTTCAATACATGATATTAAACTTGTCTAAACAATTGAACTTAGTTTCCATTA-TTG
254 TTTAAATAGCTTTAATACAT-AT-TTAAACTTGTCCAAATAATTGAACTTAGTTTTCA-CAGTTG
8364189 A
316 A
* * ** * * * ** *
8364190 TATGTGTGAAACAGTTATAGTTTCTA--TTTGTTTATAACTTTTTGTGCCATTAATGGGCAAAAT
1 -ATGTATGAAAAAGTT-GCGTTT-TATGTTTGTTTA-GACTTTTTGTGTCAGTAAAAGGCAAAAA
* * * * * * * * * *
8364253 TGT-AATTATTCATTTATTATTTTGTTTTAACAATTTAGATAGCCTAAATAAATGATACTAAACT
62 TGTAAATT-TACAATTATTGTTCTATTTTAATAATTTAGATAGCTTTAATATATGATATTAAACT
*
8364317 TGTCCAAATAATTAAACTTGGTTTCTA-TGATT-ACTATGTGTGAAAAAGTTATGATTTATGTCT
126 TGTCCAAATAATTGAACTTGGTTTCTACT-ATTGA-TATGTGTGAAAAAGTTATGATTTATGTCT
* *** * * * * *
8364380 ATTTAGGAC-TTTTGTGCTGCTAAAAGGAAAAAAAATGCAAATTTGCAATTATTGTTTTGTTTTA
189 GTTTAGGACTTTTTGTGCCATTAAAAGGCAAAAATAT---AATTTGCAATTA-TATTCTATTTTA
* * * * *
8364444 ATAGTTTAAATAGCTTTAGT-GATA-TT-AACTTGTCCCAATTATTGAACTTGGTTTTCACAGTT
250 ATAGTTTAAATAGCTTTAATACATATTTAAACTTGTCCAAATAATTGAACTTAGTTTTCACAGTT
8364506 GA
315 GA
** * * * *
8364508 TATGTGCGAAAAAGTTGCATTTTATGTTTGTTCAAGACATTTTGTGTC-GTTAAAAGGCAAAATT
1 -ATGTATGAAAAAGTTGCGTTTTATGTTTGTT-TAGACTTTTTGTGTCAG-TAAAAGGCAAAAAT
* * * ** * *
8364572 GCAAGTTTACAGTTATTGTTCTATTTTAATAATTTAGATAGCTTCGATATAAGATATTAAACTTA
63 GTAAATTTACAATTATTGTTCTATTTTAATAATTTAGATAGCTTTAATATATGATATTAAACTTG
* * * * *
8364637 TCCAAATAATTGAACTTGGTTTGTACAATTGATATATGTGAAAAAGTTATGGTTTATGTTTGTTT
128 TCCAAATAATTGAACTTGGTTTCTACTATTGATATGTGTGAAAAAGTTATGATTTATGTCTGTTT
* * * * * * *
8364702 AGGACTTTTTATACCATTAAAAGGCAAAATTGTAA-TTGCACTTACTATTCTATTTTAACAATTT
193 AGGACTTTTTGTGCCATTAAAAGGCAAAAATATAATTTGCAATTA-TATTCTATTTTAATAGTTT
* * * * * * * * * *
8364766 AGATAACCTAAATACAATATATTAAACTTTTTCGAATGATTGAATTTAGTTTTCACAATTGA
257 AAATAGCTTTAATAC-ATAT-TTAAACTTGTCCAAATAATTGAACTTAGTTTTCACAGTTGA
* *
8364828 TATTTATGAAAAAGTTGCGTTTTATGTTTGTTTGAGACTTTTTGTGTCAGT-AAAGGTAAAAATG
1 -ATGTATGAAAAAGTTGCGTTTTATGTTTGTTT-AGACTTTTTGTGTCAGTAAAAGGCAAAAATG
* * * *
8364892 TAAATTTACAATTATTGTTTTGTTTTAATAGTTTAAATAGCTTTAATATATGATATTAAACTTGT
64 TAAATTTACAATTATTGTTCTATTTTAATAATTTAGATAGCTTTAATATATGATATTAAACTTGT
* * * ** *
8364957 CTAAATGATTGAACTTGG-TTCCACTATTGATATGCATGAAAAAGTTATTATTTATGTCTGTTTA
129 CCAAATAATTGAACTTGGTTTCTACTATTGATATGTGTGAAAAAGTTATGATTTATGTCTGTTTA
* * * *
8365021 GGACTTTTTGTGCCATTAAAGGGCAAAAATATAATTTGGTAGTTATAATTCTCTTTTAATAGTTT
194 GGACTTTTTGTGCCATTAAAAGGCAAAAATATAATTT-GCAATTAT-ATTCTATTTTAATAGTTT
* *
8365086 AAATAGGTTTAATACATGATTTCAAACTTGTCCAAATAATTGAACTTAGTTTTCACGGTTG-
257 AAATAGCTTTAATACAT-ATTT-AAACTTGTCCAAATAATTGAACTTAGTTTTCACAGTTGA
* * * * *
8365147 ATGTATGAGAAAGTTGCCG-TTTATATCTATTTAGGA-TTTTT-TGTTATGTCAAAAGGCAAAAA
1 ATGTATGAAAAAGTTG-CGTTTTATGTTTGTTTA-GACTTTTTGTGTCA-GT-AAAAGGCAAAAA
* * * * * * *
8365209 TATAAATTTGCAATTGTTGTTCCATTTTAATAGTTTAGATAGCTTTAATGTATCATATTAAACTT
62 TGTAAATTTACAATTATTGTTCTATTTTAATAATTTAGATAGCTTTAATATATGATATTAAACTT
8365274 ATCCGATTGT
Statistics
Matches: 866, Mismatches: 179, Indels: 77
0.77 0.16 0.07
Matches are distributed among these distances:
315 30 0.03
316 8 0.01
317 15 0.02
318 269 0.31
319 183 0.21
320 214 0.25
321 102 0.12
322 16 0.02
323 29 0.03
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.42
Consensus pattern (316 bp):
ATGTATGAAAAAGTTGCGTTTTATGTTTGTTTAGACTTTTTGTGTCAGTAAAAGGCAAAAATGTA
AATTTACAATTATTGTTCTATTTTAATAATTTAGATAGCTTTAATATATGATATTAAACTTGTCC
AAATAATTGAACTTGGTTTCTACTATTGATATGTGTGAAAAAGTTATGATTTATGTCTGTTTAGG
ACTTTTTGTGCCATTAAAAGGCAAAAATATAATTTGCAATTATATTCTATTTTAATAGTTTAAAT
AGCTTTAATACATATTTAAACTTGTCCAAATAATTGAACTTAGTTTTCACAGTTGA
Found at i:8371270 original size:28 final size:26
Alignment explanation
Indices: 8371215--8371270 Score: 60
Period size: 26 Copynumber: 2.1 Consensus size: 26
8371205 TGTGATTTCA
* *
8371215 TTTTCATATATTTCTTACATTGTTAT
1 TTTTCATATATTTCTTAAATTGTAAT
8371241 TTTTCATATATATTCATTAAAATT-TAAT
1 TTTTCATATAT-TTC-TT-AAATTGTAAT
8371269 TT
1 TT
8371271 GAGAAGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
26 11 0.44
27 3 0.12
28 7 0.28
29 4 0.16
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (26 bp):
TTTTCATATATTTCTTAAATTGTAAT
Found at i:8373924 original size:86 final size:87
Alignment explanation
Indices: 8373804--8373972 Score: 250
Period size: 86 Copynumber: 2.0 Consensus size: 87
8373794 TTTTACTTTA
* * * *
8373804 AACTTTTATGCTTGTCATGGTCTAGTGTTGTACCATGTTAAAAAGCAATTAGAAAGATCTAGATG
1 AACTTTTATACTTGTCATGATCTAGTGTTGTACCATATTAAAAAGCAATTAGAAAGATCTAGATA
* *
8373869 ATACAATAATTTAGGGAAGCTT
66 ATACAAGAATTAAGGGAAGCTT
* * *
8373891 AACTTTTATACTTGT-ATGATCTAGTTTTGTACCATATTATAAAGCAATTAGAAAGATCTATATA
1 AACTTTTATACTTGTCATGATCTAGTGTTGTACCATATTAAAAAGCAATTAGAAAGATCTAGATA
8373955 ATACAAGAATTAAGGGAA
66 ATACAAGAATTAAGGGAA
8373973 ACTCACTTAT
Statistics
Matches: 73, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
86 59 0.81
87 14 0.19
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.35
Consensus pattern (87 bp):
AACTTTTATACTTGTCATGATCTAGTGTTGTACCATATTAAAAAGCAATTAGAAAGATCTAGATA
ATACAAGAATTAAGGGAAGCTT
Found at i:8376552 original size:91 final size:91
Alignment explanation
Indices: 8376404--8376582 Score: 268
Period size: 91 Copynumber: 2.0 Consensus size: 91
8376394 GGCTATAAGT
** * * *
8376404 AATGCCATATTTCCCATTATAAAAATTGTACATAGAATGCCTAGGGTATAAATAAAATAAATAAT
1 AATGCCATACATCCCATTATAAAAATTGTACATAGAATACATAGGGTATAAATAAAATAAATAAC
*
8376469 ATATATTTTATTTTACCTTTATAAAG
66 ATATATTTTATTCTACCTTTATAAAG
* * * *
8376495 AATGCCATACATCTCATTATGAAAATTGTACATAGAATACATATGGTATAAATAAAATTAATAAC
1 AATGCCATACATCCCATTATAAAAATTGTACATAGAATACATAGGGTATAAATAAAATAAATAAC
8376560 ATATATTTTATTCTACCTTTATA
66 ATATATTTTATTCTACCTTTATA
8376583 GGTTTTGAAT
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
91 78 1.00
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (91 bp):
AATGCCATACATCCCATTATAAAAATTGTACATAGAATACATAGGGTATAAATAAAATAAATAAC
ATATATTTTATTCTACCTTTATAAAG
Found at i:8388399 original size:38 final size:38
Alignment explanation
Indices: 8388357--8388433 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
8388347 CATAACTGTC
8388357 AAAAATCTCTATCTTATAGGTATTCACCCTAATATGTT
1 AAAAATCTCTATCTTATAGGTATTCACCCTAATATGTT
8388395 AAAAATCTCTATCTTATAGGTATTCACCCTAATATGTT
1 AAAAATCTCTATCTTATAGGTATTCACCCTAATATGTT
8388433 A
1 A
8388434 GAGAATTCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (38 bp):
AAAAATCTCTATCTTATAGGTATTCACCCTAATATGTT
Found at i:8393389 original size:13 final size:13
Alignment explanation
Indices: 8393371--8393397 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8393361 TGCTTGCTGC
8393371 AAATGTATTATGG
1 AAATGTATTATGG
8393384 AAATGTATTATGG
1 AAATGTATTATGG
8393397 A
1 A
8393398 CCTTAAGGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (13 bp):
AAATGTATTATGG
Found at i:8397076 original size:1 final size:1
Alignment explanation
Indices: 8397070--8397096 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
8397060 ATTTAAAAGT
8397070 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
8397097 CATCGTGCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8400772 original size:19 final size:19
Alignment explanation
Indices: 8400748--8400787 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
8400738 AGTTATACAA
8400748 TTACAAATCTAGAAATGAT
1 TTACAAATCTAGAAATGAT
8400767 TTACAAATCTAGAAATGAT
1 TTACAAATCTAGAAATGAT
8400786 TT
1 TT
8400788 TTAAGTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (19 bp):
TTACAAATCTAGAAATGAT
Found at i:8404174 original size:2 final size:2
Alignment explanation
Indices: 8404167--8404192 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8404157 TTCATAATAA
8404167 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8404193 TAATGATCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8408811 original size:2 final size:2
Alignment explanation
Indices: 8408804--8408847 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
8408794 TCACTAACAA
8408804 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8408846 TC
1 TC
8408848 AATGGCGCCG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8409850 original size:19 final size:20
Alignment explanation
Indices: 8409828--8409865 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
8409818 TTGATTGGAA
8409828 AAAAAAAAAAAC-TAAAAAC
1 AAAAAAAAAAACTTAAAAAC
*
8409847 AAAAACAAAAACTTAAAAA
1 AAAAAAAAAAACTTAAAAA
8409866 GAATGAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.82, C:0.11, G:0.00, T:0.08
Consensus pattern (20 bp):
AAAAAAAAAAACTTAAAAAC
Found at i:8412117 original size:70 final size:70
Alignment explanation
Indices: 8412004--8412141 Score: 224
Period size: 70 Copynumber: 2.0 Consensus size: 70
8411994 GGAAGGAAAA
* * * *
8412004 TGGATGGATTTGCACCTTTCCTTTCCCTCATAATTCGATCCTTCCAAAAGTTG-AAGACATTCAT
1 TGGATGGATTTGCACCTTTCCTTTCACTCATAATCCAATCCTTCCAAAAG-TGAAAGACACTCAT
8412068 TCAACT
65 TCAACT
8412074 TGGATGGATTTGCACCTTTCCTTTCACTCATAATCCAATCCTTCCAAAAGTGAAAGACACTCATT
1 TGGATGGATTTGCACCTTTCCTTTCACTCATAATCCAATCCTTCCAAAAGTGAAAGACACTCATT
8412139 CAA
66 CAA
8412142 GTTGAATTAA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
69 2 0.03
70 61 0.97
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.33
Consensus pattern (70 bp):
TGGATGGATTTGCACCTTTCCTTTCACTCATAATCCAATCCTTCCAAAAGTGAAAGACACTCATT
CAACT
Found at i:8413519 original size:30 final size:29
Alignment explanation
Indices: 8413484--8413585 Score: 105
Period size: 30 Copynumber: 3.3 Consensus size: 29
8413474 TAAAATTTTA
* * *
8413484 TTTATTTAATTATAAACTCAAAATTGAAAT
1 TTTATTTAAATATAAA-TAAAAATTAAAAT
* *
8413514 TTTATTTAAATATAAATTAAAATATAAAAA
1 TTTATTTAAATATAAATAAAAAT-TAAAAT
8413544 TTTATTTAAATATAAATTAAAAATTAAAGAT
1 TTTATTTAAATATAAA-TAAAAATTAAA-AT
8413575 TTAATATTTAA
1 TT--TATTTAA
8413586 TATTTAATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
29 6 0.10
30 39 0.64
31 9 0.15
33 7 0.11
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (29 bp):
TTTATTTAAATATAAATAAAAATTAAAAT
Done.