Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 66 of 93
Found at i:9268988 original size:22 final size:23
Alignment explanation
Indices: 9268949--9268993 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
9268939 TAAAGTAATA
*
9268949 AAATATAAATATATAACA-ATTT
1 AAATATAAAAATATAACATATTT
9268971 AAATATAAAAA-ATAAACATATTT
1 AAATATAAAAATAT-AACATATTT
9268994 TTTAAATATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 14 0.70
23 4 0.20
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (23 bp):
AAATATAAAAATATAACATATTT
Found at i:9271216 original size:19 final size:20
Alignment explanation
Indices: 9271182--9271221 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
9271172 AAAAGAATTG
*
9271182 ACAACAATATAAATATCAAA
1 ACAACAATAAAAATATCAAA
*
9271202 ACAACAA-AAAAATATTAAA
1 ACAACAATAAAAATATCAAA
9271221 A
1 A
9271222 TTCAATTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.17
Consensus pattern (20 bp):
ACAACAATAAAAATATCAAA
Found at i:9281522 original size:22 final size:21
Alignment explanation
Indices: 9281489--9281546 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 21
9281479 TACCTATACC
9281489 ATAAA-TATATTTATATTATTTA
1 ATAAATTA-ATTT-TATTATTTA
9281511 ATAAATTAA-TTT-TTATTTA
1 ATAAATTAATTTTATTATTTA
*
9281530 ATAATATAAATTTTATT
1 ATAA-ATTAATTTTATT
9281547 TTAGATTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
19 11 0.35
20 5 0.16
21 5 0.16
22 8 0.26
23 2 0.06
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
ATAAATTAATTTTATTATTTA
Found at i:9281528 original size:19 final size:19
Alignment explanation
Indices: 9281504--9281547 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
9281494 TATATTTATA
*
9281504 TTATTTAATAA-ATTAATTT
1 TTATTTAATAATA-TAAATT
9281523 TTATTTAATAATATAAATT
1 TTATTTAATAATATAAATT
9281542 TTATTT
1 TTATTT
9281548 TAGATTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 22 0.96
20 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTATTTAATAATATAAATT
Found at i:9281942 original size:3 final size:3
Alignment explanation
Indices: 9281934--9281994 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
9281924 TAAACCTTTA
9281934 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9281982 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
9281995 CAAGTCTTTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9290457 original size:24 final size:24
Alignment explanation
Indices: 9290425--9290474 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
9290415 AATCCAATTC
9290425 AACACTCTAGAACCAAACATATTG
1 AACACTCTAGAACCAAACATATTG
9290449 AACACTCTAGAACCAAACATATTG
1 AACACTCTAGAACCAAACATATTG
9290473 AA
1 AA
9290475 ATTAGGTGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.24, G:0.08, T:0.20
Consensus pattern (24 bp):
AACACTCTAGAACCAAACATATTG
Found at i:9292684 original size:20 final size:20
Alignment explanation
Indices: 9292659--9292697 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
9292649 TGAAAATCTG
*
9292659 ATGATGTTTTGATATTGATA
1 ATGATGCTTTGATATTGATA
9292679 ATGATGCTTTGATATTGAT
1 ATGATGCTTTGATATTGAT
9292698 GGATATATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.49
Consensus pattern (20 bp):
ATGATGCTTTGATATTGATA
Found at i:9294254 original size:3 final size:3
Alignment explanation
Indices: 9294246--9294279 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
9294236 CATCCATTTT
9294246 ATA ATA ATA ATA ATA ATA A-A ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
9294280 TAGGTTTCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:9299332 original size:16 final size:16
Alignment explanation
Indices: 9299306--9299348 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
9299296 TGAAGAAGAA
* * *
9299306 AAAAAGAAGAAGCATG
1 AAAAATAAGAAACAAG
*
9299322 AAAAATGAGAAACAAG
1 AAAAATAAGAAACAAG
9299338 AAAAATAAGAA
1 AAAAATAAGAA
9299349 TAATAAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.70, C:0.05, G:0.19, T:0.07
Consensus pattern (16 bp):
AAAAATAAGAAACAAG
Found at i:9301869 original size:73 final size:69
Alignment explanation
Indices: 9301790--9302011 Score: 200
Period size: 73 Copynumber: 3.0 Consensus size: 69
9301780 TTTTAAGATT
*
9301790 AAAAACATGATATTTGTTGAAAATATATTATGAAAAAAATTA-TTTTCAGAATTCAACAAAGATA
1 AAAAACA--ATATTTGTTGAAAA-A-A-TATGAAAAAAATTATTTTTCATAATTCAACAAAGATA
9301854 ATATTTTTA
61 ATATTTTTA
* * *
9301863 AAAAACAA-ATGTGCTCTGTATAAAAAATATGAAAAAAATTATTTTTCATAATTCAACAAAAATG
1 AAAAACAATATTTG-T-TG---AAAAAATATGAAAAAAATTATTTTTCATAATTCAACAAAGATA
*
9301927 ATGTTTTTAAAATA
61 AT-ATTTT----TA
*
9301941 AAAACACAATATTTGTTG--AAAATATGAAAACAAATTTATTTTTCATAATTCAACAAAGACAAT
1 AAAA-ACAATATTTGTTGAAAAAATATGAAAA-AAA-TTATTTTTCATAATTCAACAAAGATAAT
9302004 ATTTTTA
63 ATTTTTA
9302011 A
1 A
9302012 GATAAAAAAC
Statistics
Matches: 124, Mismatches: 10, Indels: 33
0.74 0.06 0.20
Matches are distributed among these distances:
70 7 0.06
71 2 0.02
72 16 0.13
73 41 0.33
74 12 0.10
75 29 0.23
78 8 0.06
79 5 0.04
80 4 0.03
ACGTcount: A:0.50, C:0.08, G:0.07, T:0.35
Consensus pattern (69 bp):
AAAAACAATATTTGTTGAAAAAATATGAAAAAAATTATTTTTCATAATTCAACAAAGATAATATT
TTTA
Found at i:9301996 original size:75 final size:75
Alignment explanation
Indices: 9301886--9302065 Score: 233
Period size: 75 Copynumber: 2.4 Consensus size: 75
9301876 CTCTGTATAA
** *
9301886 AAAATATGAAAAAAA-TTATTTTTCATAATTCAACAAAAATGATGTTTTTAAAAT-AAAAACACA
1 AAAATATGAAAAAAATTTATTTTTCATAATTCAACAAAAACAATATTTTTAAAATAAAAAACACA
*
9301949 ATATTT-GTTG
66 AT-TTTAATTG
* *
9301959 AAAATATGAAAACAAATTTATTTTTCATAATTCAACAAAGACAATATTTTTAAGATAAAAAACAC
1 AAAATATGAAAA-AAATTTATTTTTCATAATTCAACAAAAACAATATTTTTAAAATAAAAAACAC
*
9302024 AATTTTAATTT
65 AATTTTAATTG
* *
9302035 AAAATAT-AAAAAAATTTATATTTCAAAATTC
1 AAAATATGAAAAAAATTTATTTTTCATAATTC
9302066 TTTAGTTTAA
Statistics
Matches: 94, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
73 12 0.13
74 21 0.22
75 41 0.44
76 20 0.21
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.36
Consensus pattern (75 bp):
AAAATATGAAAAAAATTTATTTTTCATAATTCAACAAAAACAATATTTTTAAAATAAAAAACACA
ATTTTAATTG
Found at i:9302102 original size:20 final size:20
Alignment explanation
Indices: 9302079--9302124 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
9302069 AGTTTAAATG
*
9302079 AAAATA-ACATTTTTAGGATA
1 AAAATACACAATTTTA-GATA
*
9302099 AAAA-ACACAATTTTAGTTA
1 AAAATACACAATTTTAGATA
9302118 AAAATAC
1 AAAATAC
9302125 GAAAAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.30
Consensus pattern (20 bp):
AAAATACACAATTTTAGATA
Found at i:9302102 original size:83 final size:83
Alignment explanation
Indices: 9302004--9302165 Score: 236
Period size: 83 Copynumber: 2.0 Consensus size: 83
9301994 CAAAGACAAT
* *
9302004 ATTTTTAAGATAAAAAACACAATTTTAATTTAAAATATAAAAAAATTTATATTTCAA-AATTCTT
1 ATTTTTAAGATAAAAAACACAATTTTAATTAAAAATACAAAAAAATTTATATTT-AAGAATTCTT
*
9302068 TAGTTTAAATGAAAATAAC
65 TAGTTTAAACGAAAATAAC
* * * *
9302087 ATTTTTAGGATAAAAAACACAATTTTAGTTAAAAATACGAAAAATTTTATATTTAAGAATTCTTT
1 ATTTTTAAGATAAAAAACACAATTTTAATTAAAAATACAAAAAAATTTATATTTAAGAATTCTTT
*
9302152 AGTTTCAACGAAAA
66 AGTTTAAACGAAAA
9302166 CGCAATTTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
82 2 0.03
83 68 0.97
ACGTcount: A:0.49, C:0.07, G:0.06, T:0.38
Consensus pattern (83 bp):
ATTTTTAAGATAAAAAACACAATTTTAATTAAAAATACAAAAAAATTTATATTTAAGAATTCTTT
AGTTTAAACGAAAATAAC
Found at i:9302736 original size:20 final size:20
Alignment explanation
Indices: 9302699--9302737 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9302689 TTTTGTTATA
* * *
9302699 TCTTGATTGTCCATTCAATG
1 TCTTGATCGTCAAGTCAATG
9302719 TCTTGATCGTCAAGTCAAT
1 TCTTGATCGTCAAGTCAAT
9302738 ACCTACCAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.41
Consensus pattern (20 bp):
TCTTGATCGTCAAGTCAATG
Found at i:9304663 original size:12 final size:12
Alignment explanation
Indices: 9304642--9304674 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
9304632 ATTTTAATCA
*
9304642 TTTTAATTATTT
1 TTTTATTTATTT
9304654 TTTTATTTATTT
1 TTTTATTTATTT
9304666 TTTTATTTA
1 TTTTATTTA
9304675 GTTTAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTATTTATTT
Found at i:9305718 original size:20 final size:20
Alignment explanation
Indices: 9305693--9305734 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
9305683 AAAAAATTAC
*
9305693 AATCATTCAACGAGTAAAGG
1 AATCATTCAAAGAGTAAAGG
9305713 AATCATTCAAAGAGTAAAGG
1 AATCATTCAAAGAGTAAAGG
9305733 AA
1 AA
9305735 ATGAAAGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19
Consensus pattern (20 bp):
AATCATTCAAAGAGTAAAGG
Found at i:9306162 original size:129 final size:128
Alignment explanation
Indices: 9305928--9306186 Score: 500
Period size: 129 Copynumber: 2.0 Consensus size: 128
9305918 TTTTTTATGC
9305928 AATTAGCATGTGGCAAATTTTACACATGATGGAGAAAAAAAAACCTCATAGTTTTAACTTTTGAG
1 AATTAGCATGTGGCAAATTTTACACATGATGGAGAAAAAAAAACCTCATAGTTTTAACTTTTGAG
9305993 TTTTCATGATTTTTATTTGTGGTCTCTTAAATAGATCTAAACCGTTAGATCCGTGATGGAGGA
66 TTTTCATGATTTTTATTTGTGGTCTCTTAAATAGATCTAAACCGTTAGATCCGTGATGGAGGA
*
9306056 AATTAGCATGTGGCAAATTTTACACATGATGGAGAAAAAAAAACCTTATAGTTTTAAACTTTTGA
1 AATTAGCATGTGGCAAATTTTACACATGATGGAGAAAAAAAAACCTCATAGTTTT-AACTTTTGA
9306121 GTTTTCATGATTTTTATTTGTGGTCTCTTAAATAGATCTAAACCGTTAGATCCGTGATGGAGGA
65 GTTTTCATGATTTTTATTTGTGGTCTCTTAAATAGATCTAAACCGTTAGATCCGTGATGGAGGA
9306185 AA
1 AA
9306187 ATTCAACCAC
Statistics
Matches: 129, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
128 54 0.42
129 75 0.58
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.36
Consensus pattern (128 bp):
AATTAGCATGTGGCAAATTTTACACATGATGGAGAAAAAAAAACCTCATAGTTTTAACTTTTGAG
TTTTCATGATTTTTATTTGTGGTCTCTTAAATAGATCTAAACCGTTAGATCCGTGATGGAGGA
Found at i:9308469 original size:23 final size:25
Alignment explanation
Indices: 9308432--9308482 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
9308422 AATCATTGAT
9308432 TTATGTGGAAAAACTAA-AATAAAA
1 TTATGTGGAAAAACTAAGAATAAAA
*
9308456 TTATGT-GAAAAACTAAGAGTAAAA
1 TTATGTGGAAAAACTAAGAATAAAA
9308480 TTA
1 TTA
9308483 AATGTATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 10 0.40
24 15 0.60
ACGTcount: A:0.55, C:0.04, G:0.14, T:0.27
Consensus pattern (25 bp):
TTATGTGGAAAAACTAAGAATAAAA
Found at i:9312126 original size:18 final size:18
Alignment explanation
Indices: 9312093--9312127 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9312083 TAATCCATGA
* *
9312093 GAACTAGAAGTTTTACCT
1 GAACTAGAAATCTTACCT
9312111 GAACTAGAAATCTTACC
1 GAACTAGAAATCTTACC
9312128 CAAATAACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GAACTAGAAATCTTACCT
Found at i:9312551 original size:26 final size:26
Alignment explanation
Indices: 9312496--9312545 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
9312486 CTCTGATACC
9312496 ATGTGAAAAAACTAAGAAATAAAACT
1 ATGTGAAAAAACTAAGAAATAAAACT
*
9312522 ATGTG-AAAAACTAAG-AGTAAAACT
1 ATGTGAAAAAACTAAGAAATAAAACT
9312546 GAATGTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.35
25 10 0.43
26 5 0.22
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.20
Consensus pattern (26 bp):
ATGTGAAAAAACTAAGAAATAAAACT
Found at i:9312729 original size:22 final size:22
Alignment explanation
Indices: 9312688--9312731 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
9312678 ATTTTTTATC
*
9312688 CTTAATTCTAGGAATGCAAATA
1 CTTAATTCTAGGAATACAAATA
9312710 CTTAATTCTAGAGAA-ACAAATA
1 CTTAATTCTAG-GAATACAAATA
9312732 TAAATATACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (22 bp):
CTTAATTCTAGGAATACAAATA
Found at i:9313380 original size:27 final size:26
Alignment explanation
Indices: 9313341--9313393 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
9313331 TTTGAATTAT
* *
9313341 TTTGAACGTAATTTTTTCTTTTTGTA
1 TTTGAACGTAATTTTTGCATTTTGTA
*
9313367 TTTGAACTTCAATTTTTGCATTTTGTA
1 TTTGAACGT-AATTTTTGCATTTTGTA
9313394 CATAACAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.21, C:0.09, G:0.11, T:0.58
Consensus pattern (26 bp):
TTTGAACGTAATTTTTGCATTTTGTA
Found at i:9313499 original size:95 final size:95
Alignment explanation
Indices: 9313326--9313499 Score: 294
Period size: 95 Copynumber: 1.8 Consensus size: 95
9313316 TTATCTAAGA
** *
9313326 CAAAGTTTGAATTATTTTGAACGTAATTTTTTCTTTTTGTATTTGAACTTCAATTTTTGCATTTT
1 CAAAGTTTGAATTATTTTGAAAATAATTTTTTCTTTTTGTATTTGAACTTCAACTTTTGCATTTT
* *
9313391 GTACATAACAAAATGAAAAATAAAAAATGT
66 GTACACAAAAAAATGAAAAATAAAAAATGT
*
9313421 CAAATTTTGAATTATTTTGAAAATAATTTTTTCTTTTTGTATTTGAACTTCAACTTTTGCATTTT
1 CAAAGTTTGAATTATTTTGAAAATAATTTTTTCTTTTTGTATTTGAACTTCAACTTTTGCATTTT
9313486 GTACACAAAAAAAT
66 GTACACAAAAAAAT
9313500 TCATGAGAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 73 1.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.46
Consensus pattern (95 bp):
CAAAGTTTGAATTATTTTGAAAATAATTTTTTCTTTTTGTATTTGAACTTCAACTTTTGCATTTT
GTACACAAAAAAATGAAAAATAAAAAATGT
Found at i:9317420 original size:13 final size:13
Alignment explanation
Indices: 9317404--9317428 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9317394 TTTTCTTTTT
9317404 CTCTTTTCCCTTC
1 CTCTTTTCCCTTC
9317417 CTCTTTTCCCTT
1 CTCTTTTCCCTT
9317429 TAGTTTTCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (13 bp):
CTCTTTTCCCTTC
Found at i:9319105 original size:35 final size:35
Alignment explanation
Indices: 9319066--9319181 Score: 99
Period size: 35 Copynumber: 3.3 Consensus size: 35
9319056 TACAAGTCAA
* *
9319066 AATAAATATGACTAGGATTAAACCATGAGTTGAAG
1 AATAAAAATGACTAGAATTAAACCATGAGTTGAAG
* * * ** *
9319101 AATAAAAATGACAAGAATTGAACTATGAGTCAAAA
1 AATAAAAATGACTAGAATTAAACCATGAGTTGAAG
* * * * *
9319136 AATAAATATTA-TTGATATTAAATCACGAGTTGAAG
1 AATAAAAATGACTAGA-ATTAAACCATGAGTTGAAG
9319171 AATAAAAATGA
1 AATAAAAATGA
9319182 TTAAGATTGA
Statistics
Matches: 59, Mismatches: 21, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
34 2 0.03
35 57 0.97
ACGTcount: A:0.52, C:0.07, G:0.16, T:0.26
Consensus pattern (35 bp):
AATAAAAATGACTAGAATTAAACCATGAGTTGAAG
Found at i:9319233 original size:70 final size:70
Alignment explanation
Indices: 9319064--9319236 Score: 185
Period size: 70 Copynumber: 2.5 Consensus size: 70
9319054 ACTACAAGTC
* * *
9319064 AAAATAAATATGACTAGGATTAAACCATGAGTTGAAGAATAAAAATGACAAGAATTGAACTATGA
1 AAAATAAATATGATTGGGATTAAACCACGAGTTGAAGAATAAAAATGACAAGAATTGAACTATGA
9319129 GTCAA
66 GTCAA
* ** * *
9319134 AAAATAAATATTATTGATATTAAATCACGAGTTGAAGAATAAAAATGATTAAG-ATTGAAC-A-G
1 AAAATAAATATGATTGGGATTAAACCACGAGTTGAAGAATAAAAATGA-CAAGAATTGAACTATG
9319196 CAAGT-AA
65 --AGTCAA
*
9319203 AGAAATGAAA-ATGATTGGGATTGAACCACGAGTT
1 A-AAAT-AAATATGATTGGGATTAAACCACGAGTT
9319237 AGGGATTGAA
Statistics
Matches: 85, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
68 1 0.01
69 4 0.05
70 74 0.87
71 6 0.07
ACGTcount: A:0.50, C:0.08, G:0.18, T:0.25
Consensus pattern (70 bp):
AAAATAAATATGATTGGGATTAAACCACGAGTTGAAGAATAAAAATGACAAGAATTGAACTATGA
GTCAA
Found at i:9319243 original size:19 final size:19
Alignment explanation
Indices: 9319219--9319255 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
9319209 GAAAATGATT
9319219 GGGATTGAACCACGAGTTA
1 GGGATTGAACCACGAGTTA
*
9319238 GGGATTGAACCATGAGTT
1 GGGATTGAACCACGAGTT
9319256 GAAGAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.24
Consensus pattern (19 bp):
GGGATTGAACCACGAGTTA
Found at i:9319277 original size:35 final size:35
Alignment explanation
Indices: 9319238--9319322 Score: 134
Period size: 35 Copynumber: 2.4 Consensus size: 35
9319228 CCACGAGTTA
* *
9319238 GGGATTGAACCATGAGTTGAAGAATAAATATGATC
1 GGGATTGAACCATGAGTCGAAAAATAAATATGATC
*
9319273 GGGATTGAAACATGAGTCGAAAAATAAATATGATC
1 GGGATTGAACCATGAGTCGAAAAATAAATATGATC
*
9319308 AGGATTGAACCATGA
1 GGGATTGAACCATGA
9319323 ATCAAAGAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 45 1.00
ACGTcount: A:0.42, C:0.09, G:0.25, T:0.24
Consensus pattern (35 bp):
GGGATTGAACCATGAGTCGAAAAATAAATATGATC
Found at i:9319352 original size:18 final size:18
Alignment explanation
Indices: 9319329--9319388 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
9319319 ATGAATCAAA
9319329 GAATGAAAATATGACTAG
1 GAATGAAAATATGACTAG
* *
9319347 GAATGAACCATATG-TTAG
1 GAATGAA-AATATGACTAG
9319365 GAAATGAAAAT-T-ACTAG
1 G-AATGAAAATATGACTAG
*
9319382 GATTGAA
1 GAATGAA
9319389 CAAAGAGTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 5 0.15
17 5 0.15
18 13 0.38
19 11 0.32
ACGTcount: A:0.47, C:0.07, G:0.22, T:0.25
Consensus pattern (18 bp):
GAATGAAAATATGACTAG
Found at i:9319416 original size:35 final size:35
Alignment explanation
Indices: 9319377--9319491 Score: 101
Period size: 35 Copynumber: 3.3 Consensus size: 35
9319367 AATGAAAATT
*
9319377 ACTAGGATTGAACAAAGAGTCAAAGAATAAATAGA
1 ACTAGGATTGAACTAAGAGTCAAAGAATAAATAGA
* * * * *
9319412 ACTAGGACTAAACTACGAGTTGAAA-AATAAA-AAA
1 ACTAGGATTGAACTAAGAG-TCAAAGAATAAATAGA
* * *
9319446 GACCAGGATTGAATTATGAGTCAAAGAATAAATATG-
1 -ACTAGGATTGAACTAAGAGTCAAAGAATAAATA-GA
9319482 ACTAGGATTG
1 ACTAGGATTG
9319492 GACTGCAAGT
Statistics
Matches: 61, Mismatches: 14, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
34 6 0.10
35 50 0.82
36 5 0.08
ACGTcount: A:0.50, C:0.10, G:0.20, T:0.21
Consensus pattern (35 bp):
ACTAGGATTGAACTAAGAGTCAAAGAATAAATAGA
Found at i:9320653 original size:11 final size:11
Alignment explanation
Indices: 9320639--9320685 Score: 62
Period size: 10 Copynumber: 4.4 Consensus size: 11
9320629 TTTTTTTTTG
9320639 TTTTTCTTCTT
1 TTTTTCTTCTT
9320650 TTTTTCTATCTT
1 TTTTTCT-TCTT
*
9320662 TTTTTTTTC-T
1 TTTTTCTTCTT
9320672 TTTTT-TTCTT
1 TTTTTCTTCTT
9320682 TTTT
1 TTTT
9320686 AAGCTTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
9 3 0.09
10 11 0.33
11 9 0.27
12 10 0.30
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTCTTCTT
Found at i:9320654 original size:20 final size:20
Alignment explanation
Indices: 9320628--9320718 Score: 80
Period size: 20 Copynumber: 4.5 Consensus size: 20
9320618 AAATCGTCTC
*
9320628 CTTTTTTTTT-GTTTTTCTT
1 CTTTTTTTTTCTTTTTTCTT
9320647 CTTTTTTTCTATCTTTTTT-TT
1 CTTTTTTT-T-TCTTTTTTCTT
* ***
9320668 TTCTTTTTTTTCTTTTTTAAG
1 CT-TTTTTTTTCTTTTTTCTT
9320689 CTTTTTTTTTCTTTTTTCTT
1 CTTTTTTTTTCTTTTTTCTT
9320709 -TTATTTTTTT
1 CTT-TTTTTTT
9320719 AAGTAAAATA
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
19 10 0.17
20 31 0.53
21 6 0.10
22 11 0.19
ACGTcount: A:0.04, C:0.11, G:0.02, T:0.82
Consensus pattern (20 bp):
CTTTTTTTTTCTTTTTTCTT
Found at i:9320697 original size:33 final size:33
Alignment explanation
Indices: 9320628--9320721 Score: 90
Period size: 32 Copynumber: 2.9 Consensus size: 33
9320618 AAATCGTCTC
* * *
9320628 CTTTTTTTTTGTTTTTCTTCTTTTTT--TCTAT
1 CTTTTTTTTTTTTTTTTTTCTTTTTTAAGCTAT
9320659 CTTTTTTTTTTCTTTTTTTTCTTTTTTAAGCT-T
1 CTTTTTTTTTT-TTTTTTTTCTTTTTTAAGCTAT
9320692 -TTTTTTTCTTTTTTCTTTTAT-TTTTTTAAG
1 CTTTTTTT-TTTTTT-TTTT-TCTTTTTTAAG
9320722 TAAAATATTT
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
31 10 0.19
32 24 0.44
33 17 0.31
34 3 0.06
ACGTcount: A:0.06, C:0.11, G:0.03, T:0.80
Consensus pattern (33 bp):
CTTTTTTTTTTTTTTTTTTCTTTTTTAAGCTAT
Found at i:9327893 original size:36 final size:36
Alignment explanation
Indices: 9327846--9327916 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
9327836 AGAACAAACA
* *
9327846 TTATATCTGTGTATGATTGATTGACTTGTCTTTGGG
1 TTATATCTGTGTAGGATTGATTAACTTGTCTTTGGG
*
9327882 TTATATCTGTGTGGGATTGATTAACTTGTCTTTGG
1 TTATATCTGTGTAGGATTGATTAACTTGTCTTTGG
9327917 CTTCGCTATC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.17, C:0.08, G:0.25, T:0.49
Consensus pattern (36 bp):
TTATATCTGTGTAGGATTGATTAACTTGTCTTTGGG
Found at i:9331275 original size:30 final size:29
Alignment explanation
Indices: 9331236--9331293 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
9331226 TTCTCAAAAA
*
9331236 AAATCAAAACCTCTAAA-CCGAAAACCTTG
1 AAATCAAAACC-CCAAACCCGAAAACCTTG
*
9331265 AAATCTAAAACCCCAAACCCTAAAACCTT
1 AAATC-AAAACCCCAAACCCGAAAACCTT
9331294 TAAAACCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.48, C:0.31, G:0.03, T:0.17
Consensus pattern (29 bp):
AAATCAAAACCCCAAACCCGAAAACCTTG
Found at i:9331298 original size:24 final size:24
Alignment explanation
Indices: 9331270--9331324 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
9331260 CCTTGAAATC
*
9331270 TAAAACCCCAAACCCTAAAACCTT
1 TAAAACCCCAAAACCTAAAACCTT
* * * *
9331294 TAAAACCCTAAAACTTCAAAGCTT
1 TAAAACCCCAAAACCTAAAACCTT
9331318 TAAAACC
1 TAAAACC
9331325 TTCTAAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.47, C:0.31, G:0.02, T:0.20
Consensus pattern (24 bp):
TAAAACCCCAAAACCTAAAACCTT
Found at i:9333680 original size:3 final size:3
Alignment explanation
Indices: 9333672--9333709 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
9333662 CAAAAGGAAG
9333672 TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9333710 CACAAATGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:9335289 original size:18 final size:18
Alignment explanation
Indices: 9335266--9335300 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9335256 ATATCTCAGT
9335266 ACTTATATGGCATATAAC
1 ACTTATATGGCATATAAC
*
9335284 ACTTATGTGGCATATAA
1 ACTTATATGGCATATAA
9335301 TTGTGTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (18 bp):
ACTTATATGGCATATAAC
Found at i:9337424 original size:18 final size:18
Alignment explanation
Indices: 9337401--9337435 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9337391 TAATTTTTAA
9337401 GAAAGAAAAAAACAAAAG
1 GAAAGAAAAAAACAAAAG
*
9337419 GAAAGAGAAAAACAAAA
1 GAAAGAAAAAAACAAAA
9337436 AAAATAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.77, C:0.06, G:0.17, T:0.00
Consensus pattern (18 bp):
GAAAGAAAAAAACAAAAG
Found at i:9338353 original size:23 final size:25
Alignment explanation
Indices: 9338327--9338382 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
9338317 GTTTGTTGAA
*
9338327 ATTTGTT-TAGGTT-TTGGTTATAT
1 ATTTGTTATAAGTTGTTGGTTATAT
*
9338350 ATTTGTTATAATTTGTTGGTTATAT
1 ATTTGTTATAAGTTGTTGGTTATAT
9338375 ATTT-TTAT
1 ATTTGTTAT
9338383 TGGATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 7 0.24
24 8 0.28
25 14 0.48
ACGTcount: A:0.21, C:0.00, G:0.16, T:0.62
Consensus pattern (25 bp):
ATTTGTTATAAGTTGTTGGTTATAT
Found at i:9338356 original size:59 final size:60
Alignment explanation
Indices: 9338193--9338346 Score: 188
Period size: 59 Copynumber: 2.6 Consensus size: 60
9338183 TTAATTTTTT
* * * *
9338193 GTTATA-AATTGTTGAAATTTGTTTGGGTTTTGATTACCAATGTG-TTGAGTTTTTGTTA
1 GTTATATATTTGTTGAAATTTGTTTGGGTTTTGGTTACCAATTTGTTTGAGTTTTAGTTA
* * * *
9338251 GTTATTTATTTCTTGAAATTTATTTGGGTTTTGGTTACCAATTTGTTTGA-TTTTAGTTG
1 GTTATATATTTGTTGAAATTTGTTTGGGTTTTGGTTACCAATTTGTTTGAGTTTTAGTTA
* * *
9338310 GTTCTATGTTTGTTGAAATTTGTTTAGGTTTTGGTTA
1 GTTATATATTTGTTGAAATTTGTTTGGGTTTTGGTTA
9338347 TATATTTGTT
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
58 5 0.06
59 71 0.89
60 4 0.05
ACGTcount: A:0.19, C:0.04, G:0.21, T:0.55
Consensus pattern (60 bp):
GTTATATATTTGTTGAAATTTGTTTGGGTTTTGGTTACCAATTTGTTTGAGTTTTAGTTA
Found at i:9346353 original size:10 final size:9
Alignment explanation
Indices: 9346333--9346379 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
9346323 GTTTTTTGGA
9346333 TTTTATTTT
1 TTTTATTTT
*
9346342 TTTTACTTT
1 TTTTATTTT
*
9346351 TTTT-TTTA
1 TTTTATTTT
*
9346359 TTTT-TGTT
1 TTTTATTTT
9346367 TTTTATTTT
1 TTTTATTTT
9346376 TTTT
1 TTTT
9346380 CATTAATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
8 12 0.39
9 19 0.61
ACGTcount: A:0.09, C:0.02, G:0.02, T:0.87
Consensus pattern (9 bp):
TTTTATTTT
Found at i:9346353 original size:26 final size:24
Alignment explanation
Indices: 9346324--9346379 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 24
9346314 TTTATAATTG
*
9346324 TTTTTTGGATTTTATTTTTTTTACTT
1 TTTTTTGGATTTT-TGTTTTTTA-TT
**
9346350 TTTTTTTTATTTTTGTTTTTTATT
1 TTTTTTGGATTTTTGTTTTTTATT
9346374 TTTTTT
1 TTTTTT
9346380 CATTAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 8 0.30
25 8 0.30
26 11 0.41
ACGTcount: A:0.09, C:0.02, G:0.05, T:0.84
Consensus pattern (24 bp):
TTTTTTGGATTTTTGTTTTTTATT
Found at i:9346354 original size:13 final size:12
Alignment explanation
Indices: 9346338--9346394 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
9346328 TTGGATTTTA
*
9346338 TTTTTTTTACTT
1 TTTTTTTTATTT
9346350 TTTTTTTTATTT
1 TTTTTTTTATTT
9346362 TTGTTTTTTATTT
1 TT-TTTTTTATTT
*
9346375 TTTTTCATTAATTT
1 TTTTT--TTTATTT
9346389 TTTTTT
1 TTTTTT
9346395 GTGTTTCTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
12 17 0.43
13 12 0.30
14 11 0.28
ACGTcount: A:0.11, C:0.04, G:0.02, T:0.84
Consensus pattern (12 bp):
TTTTTTTTATTT
Found at i:9346375 original size:21 final size:20
Alignment explanation
Indices: 9346333--9346378 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
9346323 GTTTTTTGGA
9346333 TTTTATTTTTTTTACTTTTTT
1 TTTTATTTTTTTTA-TTTTTT
9346354 TTTTATTTTTGTTT-TTTATTT
1 TTTTATTTTT-TTTATTT-TTT
9346375 TTTT
1 TTTT
9346379 TCATTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 3 0.13
21 17 0.74
22 3 0.13
ACGTcount: A:0.09, C:0.02, G:0.02, T:0.87
Consensus pattern (20 bp):
TTTTATTTTTTTTATTTTTT
Found at i:9346390 original size:34 final size:33
Alignment explanation
Indices: 9346333--9346400 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 33
9346323 GTTTTTTGGA
** *
9346333 TTTTATTTTTTTTACTTTTTTTTTTATTTTTGTT
1 TTTTATTTTTTTTACTTAATTTTTT-TTTGTGTT
9346367 TTTTATTTTTTTT-CATTAATTTTTTTTTGTGTT
1 TTTTATTTTTTTTAC-TTAATTTTTTTTTGTGTT
9346400 T
1 T
9346401 CTTGAATTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
33 9 0.30
34 21 0.70
ACGTcount: A:0.10, C:0.03, G:0.04, T:0.82
Consensus pattern (33 bp):
TTTTATTTTTTTTACTTAATTTTTTTTTGTGTT
Found at i:9346728 original size:21 final size:21
Alignment explanation
Indices: 9346704--9346792 Score: 99
Period size: 21 Copynumber: 4.1 Consensus size: 21
9346694 GTTTTGTTTG
*
9346704 AAGGTCTTGGAAATTATGCC-A
1 AAGGTCTTAGAAA-TATGCCTA
*
9346725 AAGGTCTTAGAGATTATGCCTA
1 AAGGTCTTAGA-AATATGCCTA
* *
9346747 GAGGTCTTAGAGATATGCCTA
1 AAGGTCTTAGAAATATGCCTA
*
9346768 GAGGTCTTAGAAATATGCCTGA
1 AAGGTCTTAGAAATATGCCT-A
9346790 AAG
1 AAG
9346793 CCTTACAAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
21 43 0.74
22 15 0.26
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (21 bp):
AAGGTCTTAGAAATATGCCTA
Found at i:9346931 original size:82 final size:82
Alignment explanation
Indices: 9346794--9346948 Score: 220
Period size: 82 Copynumber: 1.9 Consensus size: 82
9346784 GCCTGAAAGC
* * * * *
9346794 CTTACAAATCTTAACTTTTTTTAATGCTCCTCATATCAGAGGCATTGAAACTTTAAAAATTTAAA
1 CTTACAAATCTTAACATCTTTGAATGCTCCTCATATCAAAGGCATTGAAACTTTAAAAACTTAAA
9346859 ATGTTTTGTCTAGAGGT
66 ATGTTTTGTCTAGAGGT
* ** **
9346876 CTTACAAATCTTGACATCTTTGAATGCTCCTTGTATCAAAGGTGTTGAAACTTTAAAAACTTAAA
1 CTTACAAATCTTAACATCTTTGAATGCTCCTCATATCAAAGGCATTGAAACTTTAAAAACTTAAA
9346941 ATGTTTTG
66 ATGTTTTG
9346949 CCTGAAGGTT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
82 63 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (82 bp):
CTTACAAATCTTAACATCTTTGAATGCTCCTCATATCAAAGGCATTGAAACTTTAAAAACTTAAA
ATGTTTTGTCTAGAGGT
Found at i:9347208 original size:105 final size:104
Alignment explanation
Indices: 9346870--9347263 Score: 412
Period size: 104 Copynumber: 3.8 Consensus size: 104
9346860 TGTTTTGTCT
** ** * **
9346870 AGAGGTCTTACAAATCTTGACATCTTTGAATGCTCCTTGTATCAAAGGTGTTGAAACTTTAAAAA
1 AGAGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCATATCAGAGGCATTGAAACTTTAAAAA
* *
9346935 CTTAAAATGTTTTGCCTGAAGGTTTTACAGATTATGCTC
66 TTTAAAATGTTTTGCCTGAAGGTTTTAGAGATTATGCTC
* * * *
9346974 -GCAGGTCTTGCAAATCTCAACATCTTTGAATGCTCATCATGTCAGAGGCATTGAAATTTTAAAA
1 AG-AGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCATATCAGAGGCATTGAAACTTTAAAA
* * *
9347038 ATTTAAAATTTTTTGCTTGGAGGTTTTAGAGATTATGCTC
65 ATTTAAAATGTTTTGCCTGAAGGTTTTAGAGATTATGCTC
* * * * * * * ** *
9347078 GGAGATTTTACAAATCTCAACATCTTTAAATACTCCTCATATTAGAGGCATTGGAGTTTTGAAAA
1 AGAGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCATATCAGAGGCATTGAAACTTTAAAAA
** * * *
9347143 TTTAAAATGTTTTGCCAAAAAGGTCTTAGAGATTATTCCC
66 TTTAAAATGTTTTGCC-TGAAGGTTTTAGAGATTATGCTC
** * * * * *
9347183 AGAGGTCTTACAAATCTTGACATCTTTGATTGCTTCTCGTATTAGAGGCATTGAAACTTTAAAAT
1 AGAGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCATATCAGAGGCATTGAAACTTTAAAAA
*
9347248 TTTAAAATCTTTTGCC
66 TTTAAAATGTTTTGCC
9347264 CATAGATCTT
Statistics
Matches: 236, Mismatches: 51, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
103 1 0.00
104 152 0.64
105 83 0.35
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.37
Consensus pattern (104 bp):
AGAGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCATATCAGAGGCATTGAAACTTTAAAAA
TTTAAAATGTTTTGCCTGAAGGTTTTAGAGATTATGCTC
Found at i:9347335 original size:187 final size:185
Alignment explanation
Indices: 9347080--9347445 Score: 448
Period size: 187 Copynumber: 2.0 Consensus size: 185
9347070 TTATGCTCGG
* * ** *
9347080 AGATTTTACAAATCTCAACATCTTTAAATACTCCTCATATTAGAGGCATTGGAGTTTTGAAAATT
1 AGATCTTACAAATCTCAACATCTTTAAATACTCCTCATATTAGAGGCATTGAAACTTTAAAAATT
** * * * * **
9347145 TAAAATGTTTTGC-CAAAAAGGTCTTAGAGATTATTCCCAGAGGTCTTACAAATCTTGACATCTT
66 TAAAAAATTTTGCTC--AAAGGTCTTAAAGATTATGCACAGAGGTCTTACAAATATCAACA-CTT
* * * *
9347209 TGATTGCTTCTCGTATTAGAGGCATTGAAACTTT-AAAATTTTAAAATCTTTTGCCCAT
128 TAAATGCTCCTCGTATCAGAGGCATTGAAACTTTGAAAA-TTTAAAATCTTTTGCCCAT
* * * *
9347267 AGATCTTACAAATCTCAACTTCTTTGAATGCTCCTTATATTAGAGGCATTGAAACTTTAAAAATT
1 AGATCTTACAAATCTCAACATCTTTAAATACTCCTCATATTAGAGGCATTGAAACTTTAAAAATT
* **
9347332 TAAAAAATTTTGCTCAGAGGTCTTAAAGATTATGCATGGAGGTCTTACAAATATCAACACTTTAA
66 TAAAAAATTTTGCTCAAAGGTCTTAAAGATTATGCACAGAGGTCTTACAAATATCAACACTTTAA
* *
9347397 ATGCTCCTCGTATCAGAGGCATTGAAATTTTGAAAATTTAAAATGTTTT
131 ATGCTCCTCGTATCAGAGGCATTGAAACTTTGAAAATTTAAAATCTTTT
9347446 AGTCAGAGTC
Statistics
Matches: 151, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
185 44 0.29
186 39 0.26
187 67 0.44
188 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (185 bp):
AGATCTTACAAATCTCAACATCTTTAAATACTCCTCATATTAGAGGCATTGAAACTTTAAAAATT
TAAAAAATTTTGCTCAAAGGTCTTAAAGATTATGCACAGAGGTCTTACAAATATCAACACTTTAA
ATGCTCCTCGTATCAGAGGCATTGAAACTTTGAAAATTTAAAATCTTTTGCCCAT
Found at i:9347356 original size:82 final size:82
Alignment explanation
Indices: 9347180--9347356 Score: 237
Period size: 82 Copynumber: 2.2 Consensus size: 82
9347170 AGAGATTATT
** * * *
9347180 CCCAGAGGTCTTACAAATCTTGACATCTTTGATTGCTTCTCGTATTAGAGGCATTGAAACTTTAA
1 CCCAGAGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCATATTAGAGGCATTGAAACTTTAA
* **
9347245 AATTTTAAAATCTTTTG
66 AAATTTAAAAAATTTTG
* * * *
9347262 CCCATAGATCTTACAAATCTCAACTTCTTTGAATGCTCCTTATATTAGAGGCATTGAAACTTTAA
1 CCCAGAGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCATATTAGAGGCATTGAAACTTTAA
9347327 AAATTTAAAAAATTTTG
66 AAATTTAAAAAATTTTG
*
9347344 CTCAGAGGTCTTA
1 CCCAGAGGTCTTA
9347357 AAGATTATGC
Statistics
Matches: 80, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (82 bp):
CCCAGAGGTCTTACAAATCTCAACATCTTTGAATGCTCCTCATATTAGAGGCATTGAAACTTTAA
AAATTTAAAAAATTTTG
Found at i:9347452 original size:103 final size:103
Alignment explanation
Indices: 9347270--9347466 Score: 263
Period size: 103 Copynumber: 1.9 Consensus size: 103
9347260 TGCCCATAGA
* * * * *
9347270 TCTTACAAATCTCAACTTCTTTGAATGCTCCTTATATTAGAGGCATTGAAACTTTAAAAATTTAA
1 TCTTACAAATATCAACTACTTTAAATGCTCCTCATATCAGAGGCATTGAAACTTTAAAAATTTAA
9347335 AAAATTTTGCTCAGAGGTCTTAAAGATTATGCATGGAGG
66 AAAATTTTGCTCAGA-GTCTTAAAGATTATGCATGGAGG
* * *
9347374 TCTTACAAATATCAAC-ACTTTAAATGCTCCTCGTATCAGAGGCATTGAAATTTTGAAAATTTAA
1 TCTTACAAATATCAACTACTTTAAATGCTCCTCATATCAGAGGCATTGAAACTTTAAAAATTTAA
** *
9347438 AATGTTTTAG-TCAGAGTCTTACAGATTAT
66 AAAATTTT-GCTCAGAGTCTTAAAGATTAT
9347467 CTTGGGTGTC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
102 13 0.16
103 52 0.64
104 16 0.20
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (103 bp):
TCTTACAAATATCAACTACTTTAAATGCTCCTCATATCAGAGGCATTGAAACTTTAAAAATTTAA
AAAATTTTGCTCAGAGTCTTAAAGATTATGCATGGAGG
Found at i:9347523 original size:32 final size:32
Alignment explanation
Indices: 9347482--9347569 Score: 117
Period size: 32 Copynumber: 2.8 Consensus size: 32
9347472 GTGTCAGTTT
9347482 GACTGGGCTTAGTTTGATTTAAGTGCC-AGCTA
1 GACTGGGCTTAGTTTGATTTAAGTGCCAAG-TA
9347514 GACTGGGCTTAGTTTGATTTGAA-TGCCAAGTA
1 GACTGGGCTTAGTTTGATTT-AAGTGCCAAGTA
* * *
9347546 AATTGGGCTTAGTTTAATTTAAGT
1 GACTGGGCTTAGTTTGATTTAAGT
9347570 ACTAGCTAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
31 2 0.04
32 44 0.88
33 4 0.08
ACGTcount: A:0.25, C:0.11, G:0.26, T:0.38
Consensus pattern (32 bp):
GACTGGGCTTAGTTTGATTTAAGTGCCAAGTA
Found at i:9347687 original size:23 final size:23
Alignment explanation
Indices: 9347566--9347827 Score: 133
Period size: 23 Copynumber: 11.6 Consensus size: 23
9347556 AGTTTAATTT
* * *
9347566 AAGTACTAGCTAAACTAAGCTTA
1 AAGTGCTAGCTAATCTAGGCTTA
* *
9347589 AAGTACTAGGTAATCTAGGCTT-
1 AAGTGCTAGCTAATCTAGGCTTA
** ** * * *
9347611 GGGTTTTAGCTGATATGGGCTT-
1 AAGTGCTAGCTAATCTAGGCTTA
* * *
9347633 AGGTGCTAGTTAAT-TTGGACTTAA
1 AAGTGCTAGCTAATCTAGG-CTT-A
*
9347657 AAGCGCTAGCTAATCTAGGCTTA
1 AAGTGCTAGCTAATCTAGGCTTA
* *
9347680 AAGTGCTAGCTAATCTGGGCTTG
1 AAGTGCTAGCTAATCTAGGCTTA
* * * * * *
9347703 GA-TACCAACTACTCTGGGCTT-
1 AAGTGCTAGCTAATCTAGGCTTA
*
9347724 AGGTG-TAAGCTAATCTAGGCTT-
1 AAGTGCT-AGCTAATCTAGGCTTA
** * *
9347746 GGGTGCCAGCTAATCTAGGCATA
1 AAGTGCTAGCTAATCTAGGCTTA
* * *
9347769 AAGTGCTAGCTAATTTATGCATA
1 AAGTGCTAGCTAATCTAGGCTTA
* *
9347792 AAGTGCCAGCTAATCTAGGCTTG
1 AAGTGCTAGCTAATCTAGGCTTA
*
9347815 TAGTGCTAGCTAA
1 AAGTGCTAGCTAA
9347828 ATTGGGCTTA
Statistics
Matches: 180, Mismatches: 51, Indels: 16
0.73 0.21 0.06
Matches are distributed among these distances:
21 3 0.02
22 72 0.40
23 88 0.49
24 14 0.08
25 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (23 bp):
AAGTGCTAGCTAATCTAGGCTTA
Found at i:9348033 original size:27 final size:27
Alignment explanation
Indices: 9347983--9348055 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
9347973 GACTTCCTTA
9347983 TCTCTTT-TTTTCTTTTTTT-TTTTTT
1 TCTCTTTCTTTTCTTTTTTTCTTTTTT
*
9348008 TCTCTTTCTTTACTTTTTTTCTTTTTT
1 TCTCTTTCTTTTCTTTTTTTCTTTTTT
* *
9348035 CCTCTTTCTTTTTTTTTTTTC
1 TCTCTTTCTTTTCTTTTTTTC
9348056 ATTTCACTAC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.17
26 11 0.26
27 24 0.57
ACGTcount: A:0.01, C:0.18, G:0.00, T:0.81
Consensus pattern (27 bp):
TCTCTTTCTTTTCTTTTTTTCTTTTTT
Found at i:9348067 original size:45 final size:42
Alignment explanation
Indices: 9347985--9348067 Score: 105
Period size: 45 Copynumber: 1.9 Consensus size: 42
9347975 CTTCCTTATC
**
9347985 TCTTTTTTTCTTTTTTTTTTTTTTCTCTTTCTTTACTTTTTT
1 TCTTTTTTTCTTTTTTTTTTTTTTCTCTTTCACTACTTTTTT
9348027 TCTTTTTTCCTCTTTCTTTTTTTTTTT-TCATTTCACTACTT
1 TCTTTTTT--TCTTT-TTTTTTTTTTTCTC-TTTCACTACTT
9348068 AAAATATTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
42 8 0.23
44 7 0.20
45 20 0.57
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (42 bp):
TCTTTTTTTCTTTTTTTTTTTTTTCTCTTTCACTACTTTTTT
Found at i:9348465 original size:15 final size:15
Alignment explanation
Indices: 9348445--9348475 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
9348435 TGTTTTTCTC
*
9348445 ATGATGCATATGCAA
1 ATGATGCAAATGCAA
9348460 ATGATGCAAATGCAA
1 ATGATGCAAATGCAA
9348475 A
1 A
9348476 GATTTTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (15 bp):
ATGATGCAAATGCAA
Found at i:9350502 original size:16 final size:17
Alignment explanation
Indices: 9350481--9350513 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
9350471 TGTTATTCAA
9350481 AAAATTGCATA-AAAAT
1 AAAATTGCATAGAAAAT
*
9350497 AAAATTTCATAGAAAAT
1 AAAATTGCATAGAAAAT
9350514 TGAAAGCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (17 bp):
AAAATTGCATAGAAAAT
Found at i:9356878 original size:5 final size:5
Alignment explanation
Indices: 9356854--9356903 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
9356844 CATGCATTAA
* *
9356854 AAAAT AAAAAC AAAAT -AAAT AAAAT TAAA- AAAAT AAAAT AAAAAT AAAAT
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT
9356904 CTTAAAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
4 7 0.19
5 21 0.57
6 9 0.24
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:9356887 original size:14 final size:13
Alignment explanation
Indices: 9356852--9356897 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 13
9356842 AACATGCATT
*
9356852 AAAAAATAAAAACA
1 AAAAAAT-AAAATA
9356866 AAATAAATAAAATTA
1 AAA-AAATAAAA-TA
9356881 AAAAAATAAAATA
1 AAAAAATAAAATA
9356894 AAAA
1 AAAA
9356898 TAAAATCTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 6 0.21
14 15 0.52
15 8 0.28
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAATAAAATA
Found at i:9356894 original size:19 final size:18
Alignment explanation
Indices: 9356865--9356902 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
9356855 AAATAAAAAC
*
9356865 AAAATAAATAAAATTAAA
1 AAAATAAATAAAAATAAA
9356883 AAAATAAAATAAAAATAAA
1 AAAAT-AAATAAAAATAAA
9356902 A
1 A
9356903 TCTTAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAATAAATAAAAATAAA
Found at i:9358742 original size:5 final size:5
Alignment explanation
Indices: 9358734--9358771 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
9358724 TTATTTTTTT
9358734 TAAAA TAAAA TAAAA TAAAA TAATAA TAATAA -AAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAA-AA TAA-AA TAAAA TA
9358772 TATATGAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 2 0.06
5 21 0.68
6 8 0.26
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (5 bp):
TAAAA
Found at i:9358769 original size:16 final size:15
Alignment explanation
Indices: 9358734--9358771 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
9358724 TTATTTTTTT
9358734 TAAAATAAAATAAAA
1 TAAAATAAAATAAAA
9358749 TAAAATAATAATAATAA
1 TAAAATAA-AATAA-AA
9358766 -AAAATA
1 TAAAATA
9358772 TATATGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.38
16 11 0.52
17 2 0.10
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
TAAAATAAAATAAAA
Found at i:9359138 original size:3 final size:3
Alignment explanation
Indices: 9359132--9359204 Score: 85
Period size: 3 Copynumber: 24.7 Consensus size: 3
9359122 AGAAGAAGAA
* * * *
9359132 GAT GAT GAT GAT GAC GAT GAT GAT GAT GGT AAT G-T GAT GAT GTT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
9359179 GAT GAT AAT GAT GAC GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
9359205 AACACGTGAG
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
2 2 0.04
3 55 0.96
ACGTcount: A:0.33, C:0.03, G:0.33, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:9361698 original size:15 final size:15
Alignment explanation
Indices: 9361678--9361707 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9361668 GATGGATGTT
9361678 ATTGATGTTCTATGA
1 ATTGATGTTCTATGA
*
9361693 ATTGATGTTTTATGA
1 ATTGATGTTCTATGA
9361708 TGTTTTATGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.20, T:0.50
Consensus pattern (15 bp):
ATTGATGTTCTATGA
Found at i:9361858 original size:19 final size:18
Alignment explanation
Indices: 9361806--9361874 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 18
9361796 TAGCATATTT
*
9361806 AAATAATTACACATGTTTA
1 AAATAATTACA-AGGTTTA
9361825 AATTATAATTTACAAGGTTTGA
1 AA--ATAA-TTACAAGGTTT-A
* *
9361847 AAATAATTACAAGTTTTTT
1 AAATAATTACAAG-GTTTA
9361866 AAATAATTA
1 AAATAATTA
9361875 TAAATATTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
19 18 0.43
20 7 0.17
21 9 0.21
22 8 0.19
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (18 bp):
AAATAATTACAAGGTTTA
Found at i:9361886 original size:20 final size:19
Alignment explanation
Indices: 9361847--9361886 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9361837 CAAGGTTTGA
*
9361847 AAATAATTACAAGTTTTTT
1 AAATAATTACAAATTTTTT
*
9361866 AAATAATTATAAATATTTTT
1 AAATAATTACAAAT-TTTTT
9361886 A
1 A
9361887 TTTAAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (19 bp):
AAATAATTACAAATTTTTT
Found at i:9362923 original size:41 final size:40
Alignment explanation
Indices: 9362878--9362967 Score: 103
Period size: 41 Copynumber: 2.2 Consensus size: 40
9362868 AATGTAAGGC
**
9362878 ATGAAAAAAAAGAAGCCTAAAAAATGAAAAAA-ATAAAAAAA
1 ATGAAAAAAAAGAAGAATAAAAAA-GAAAAAAGA-AAAAAAA
* * *
9362919 ATGAAAAATAAGAATAATAAAAAAGAAAAAAGAAAGAAAA
1 ATGAAAAAAAAGAAGAATAAAAAAGAAAAAAGAAAAAAAA
9362959 A-GAAAAAAA
1 ATGAAAAAAA
9362968 TTGATTGTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 7 0.17
40 14 0.33
41 21 0.50
ACGTcount: A:0.78, C:0.02, G:0.11, T:0.09
Consensus pattern (40 bp):
ATGAAAAAAAAGAAGAATAAAAAAGAAAAAAGAAAAAAAA
Found at i:9362949 original size:9 final size:9
Alignment explanation
Indices: 9362896--9362967 Score: 58
Period size: 9 Copynumber: 7.7 Consensus size: 9
9362886 AAAGAAGCCT
*
9362896 AAAAAATGA
1 AAAAAAAGA
9362905 AAAAAATA-A
1 AAAAAA-AGA
*
9362914 AAAAAATGA
1 AAAAAAAGA
*
9362923 AAAATAAGA
1 AAAAAAAGA
9362932 ATAATAAAA-A
1 A-AA-AAAAGA
9362942 AGAAAAAAGA
1 A-AAAAAAGA
9362952 AAGAAAAAGA
1 AA-AAAAAGA
9362962 AAAAAA
1 AAAAAA
9362968 TTGATTGTGA
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
9 31 0.61
10 17 0.33
11 3 0.06
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:9365918 original size:21 final size:20
Alignment explanation
Indices: 9365868--9365911 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
9365858 AAACGAGAGG
*
9365868 AAAGGAAAAAAGCTATTTTA
1 AAAGAAAAAAAGCTATTTTA
*
9365888 AAAGAAAAAAAGCTCTTTTA
1 AAAGAAAAAAAGCTATTTTA
9365908 AAAG
1 AAAG
9365912 CATAAAATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.23
Consensus pattern (20 bp):
AAAGAAAAAAAGCTATTTTA
Found at i:9368997 original size:24 final size:24
Alignment explanation
Indices: 9368965--9369014 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
9368955 AACATGGAAG
9368965 CATAAAGAGATAACTTAGATTTAA
1 CATAAAGAGATAACTTAGATTTAA
9368989 CATAAAGAGATAACTTAGATTTAA
1 CATAAAGAGATAACTTAGATTTAA
9369013 CA
1 CA
9369015 AAGGAACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (24 bp):
CATAAAGAGATAACTTAGATTTAA
Found at i:9371810 original size:17 final size:15
Alignment explanation
Indices: 9371749--9371809 Score: 59
Period size: 17 Copynumber: 3.7 Consensus size: 15
9371739 AGCCAAATAA
*
9371749 AAATATAAAAAATCATT
1 AAATA-AAAAAATTA-T
9371766 AAATAAAAAAATTAT
1 AAATAAAAAAATTAT
*
9371781 AAAAAAATTAAAATTAT
1 AAATAAA--AAAATTAT
9371798 AAATAATAAAAA
1 AAATAA-AAAAA
9371810 AATAAAAATG
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
15 7 0.18
16 12 0.32
17 18 0.47
18 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (15 bp):
AAATAAAAAAATTAT
Found at i:9373807 original size:17 final size:17
Alignment explanation
Indices: 9373779--9373817 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
9373769 ATTATGCTTA
9373779 AATAATAATAATAATAT
1 AATAATAATAATAATAT
9373796 ATATAA-AATAATAATAT
1 A-ATAATAATAATAATAT
9373813 AATAA
1 AATAA
9373818 CTCCATCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.19
17 13 0.62
18 4 0.19
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AATAATAATAATAATAT
Found at i:9373860 original size:5 final size:6
Alignment explanation
Indices: 9373845--9373870 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
9373835 GAAATTATTA
9373845 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
9373871 TAAAGGATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:9374060 original size:13 final size:12
Alignment explanation
Indices: 9374042--9374103 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 12
9374032 TAAATTATCA
9374042 AAACCCTAAAGTG
1 AAACCCTAAAG-G
*
9374055 AAACCCTAAAATG
1 AAACCCT-AAAGG
** *
9374068 AAGTCCTAAAAGA
1 AAACCCT-AAAGG
9374081 AAACCCTAAAAGG
1 AAACCCT-AAAGG
9374094 AAACCCTAAA
1 AAACCCTAAA
9374104 TCCTATGTAA
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
12 3 0.08
13 34 0.85
14 3 0.08
ACGTcount: A:0.53, C:0.23, G:0.11, T:0.13
Consensus pattern (12 bp):
AAACCCTAAAGG
Found at i:9374101 original size:26 final size:27
Alignment explanation
Indices: 9374042--9374103 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 27
9374032 TAAATTATCA
* *
9374042 AAACCCT-AAAGTGAAACCCTAAAATG
1 AAACCCTAAAAGTAAAACCCTAAAAGG
**
9374068 AAGTCCTAAAAG-AAAACCCTAAAAGG
1 AAACCCTAAAAGTAAAACCCTAAAAGG
9374094 AAACCCTAAA
1 AAACCCTAAA
9374104 TCCTATGTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.53, C:0.23, G:0.11, T:0.13
Consensus pattern (27 bp):
AAACCCTAAAAGTAAAACCCTAAAAGG
Found at i:9374331 original size:17 final size:17
Alignment explanation
Indices: 9374304--9374342 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
9374294 TTCGTAACTT
*
9374304 AAAATAATAAAAT-TAA
1 AAAAGAATAAAATATAA
9374320 ATAAAGAATAAAATATAA
1 A-AAAGAATAAAATATAA
9374338 AAAAG
1 AAAAG
9374343 GAGATTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 15 0.75
18 4 0.20
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAAGAATAAAATATAA
Found at i:9374547 original size:20 final size:20
Alignment explanation
Indices: 9374522--9374559 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
9374512 ATATATATAT
* *
9374522 ATATTTATTTTTAATTATTG
1 ATATTTAATGTTAATTATTG
9374542 ATATTTAATGTTAATTAT
1 ATATTTAATGTTAATTAT
9374560 ATCATTCTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
ATATTTAATGTTAATTATTG
Found at i:9378402 original size:20 final size:21
Alignment explanation
Indices: 9378377--9378428 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
9378367 ATATAATTAT
9378377 ATATTTATATTTT-AAAAATA
1 ATATTTATATTTTAAAAAATA
9378397 ATATTTTATATTTTAAAAAATA
1 ATA-TTTATATTTTAAAAAATA
9378419 ATATTT-TATT
1 ATATTTATATT
9378429 CATTTTAGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.23
21 13 0.43
22 10 0.33
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
ATATTTATATTTTAAAAAATA
Found at i:9378406 original size:21 final size:22
Alignment explanation
Indices: 9378375--9378427 Score: 90
Period size: 22 Copynumber: 2.4 Consensus size: 22
9378365 TTATATAATT
9378375 ATATATTTATATTTT-AAAAATA
1 ATAT-TTTATATTTTAAAAAATA
9378397 ATATTTTATATTTTAAAAAATA
1 ATATTTTATATTTTAAAAAATA
9378419 ATATTTTAT
1 ATATTTTAT
9378428 TCATTTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 10 0.33
22 20 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATATTTTATATTTTAAAAAATA
Found at i:9380986 original size:15 final size:14
Alignment explanation
Indices: 9380968--9381034 Score: 59
Period size: 15 Copynumber: 4.6 Consensus size: 14
9380958 AAAATTGAAG
9380968 AAGAGAAAAGAATAA
1 AAGAGAAAAGAA-AA
*
9380983 AAGAAAAAAGAAAA
1 AAGAGAAAAGAAAA
9380997 AA-AGAAGAAAGAAAA
1 AAGAG-A-AAAGAAAA
9381012 AAGA-AGAAAGAAAA
1 AAGAGA-AAAGAAAA
9381026 GAAGA-AAAA
1 -AAGAGAAAA
9381035 TGAATGGGTG
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
13 1 0.02
14 18 0.39
15 26 0.57
16 1 0.02
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.01
Consensus pattern (14 bp):
AAGAGAAAAGAAAA
Found at i:9380993 original size:22 final size:20
Alignment explanation
Indices: 9380968--9381034 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 20
9380958 AAAATTGAAG
9380968 AAGAGAAAAGAATAAAAGAAAA
1 AAGA-AAAAGAA-AAAAGAAAA
*
9380990 AAGAAAAAAAGAAGAAAGAAAA
1 AAG--AAAAAGAAAAAAGAAAA
9381012 AAGAAGAAAGAAAAGAAGAAAA
1 AAGAA-AAAGAAAA-AAGAAAA
9381034 A
1 A
9381035 TGAATGGGTG
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
20 2 0.05
21 7 0.18
22 22 0.56
23 7 0.18
24 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.01
Consensus pattern (20 bp):
AAGAAAAAGAAAAAAGAAAA
Found at i:9381014 original size:37 final size:35
Alignment explanation
Indices: 9380949--9381034 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 35
9380939 GTGAAAGAAT
* ** *
9380949 GAAAAAGGAAAAATTGAAGAAGAGAAAAGAATAAAA
1 GAAAAAAGAAAAAAAGAAGAAGAAAAAAGAA-AAAA
*
9380985 GAAAAAAGAAAAAAAGAAGAAAGAAAAAAGAAGAAA
1 GAAAAAAGAAAAAAAGAAG-AAGAAAAAAGAAAAAA
9381021 GAAAAGAAGAAAAA
1 GAAAA-AAGAAAAA
9381035 TGAATGGGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
36 24 0.56
37 19 0.44
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (35 bp):
GAAAAAAGAAAAAAAGAAGAAGAAAAAAGAAAAAA
Found at i:9381990 original size:34 final size:34
Alignment explanation
Indices: 9381961--9382190 Score: 161
Period size: 34 Copynumber: 6.9 Consensus size: 34
9381951 TTTTAAGTTC
* * *
9381961 AGTTTAACTTGCACCTATGAAAAGATTTAAACCT
1 AGTTTAACTAGCACCAATGAAAAGATTTAAGCCT
* * * *
9381995 GGTTTAGCTAGCACCTATGAAAATATTTAAGCCT
1 AGTTTAACTAGCACCAATGAAAAGATTTAAGCCT
* *
9382029 AGTTTAACTGGTACCAAT-AAAA-ATTTAAG-CT
1 AGTTTAACTAGCACCAATGAAAAGATTTAAGCCT
* * * *
9382060 CAGCTTATCTAGCACCAATG-AAA-ACTTAAGCAT
1 -AGTTTAACTAGCACCAATGAAAAGATTTAAGCCT
* * ** *
9382093 AGTTTAGCTATCACTTATAAAAAGATTTAAGCCT
1 AGTTTAACTAGCACCAATGAAAAGATTTAAGCCT
* * *
9382127 AGTTTAATTGGCACCCAATGGAAA-ATTTAAAGCCT
1 AGTTTAACTAGCA-CCAATGAAAAGATTT-AAGCCT
* *
9382162 AGTTTAGCTGGCACCTAAT-AAAA-ATTTAA
1 AGTTTAACTAGCACC-AATGAAAAGATTTAA
9382191 TCCCATGAAA
Statistics
Matches: 153, Mismatches: 35, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
31 2 0.01
32 43 0.28
33 10 0.07
34 72 0.47
35 26 0.17
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (34 bp):
AGTTTAACTAGCACCAATGAAAAGATTTAAGCCT
Found at i:9382273 original size:32 final size:31
Alignment explanation
Indices: 9382235--9382332 Score: 106
Period size: 32 Copynumber: 3.1 Consensus size: 31
9382225 TGATGAAAAG
*
9382235 ATTTAAACTTAGTCTAGTTGACACCAATGAAA
1 ATTTAAACCTAGT-TAGTTGACACCAATGAAA
* * *
9382267 ATTTAAACCTAGTTTATTTGGCATCTAATGAAA
1 ATTTAAACCTAG-TTAGTTGACA-CCAATGAAA
* * *
9382300 ATTTAAGCCTAATTAGCTGACACCAATGAAA
1 ATTTAAACCTAGTTAGTTGACACCAATGAAA
9382331 AT
1 AT
9382333 CTAAGTCCAG
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
31 10 0.19
32 25 0.46
33 19 0.35
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (31 bp):
ATTTAAACCTAGTTAGTTGACACCAATGAAA
Found at i:9382345 original size:64 final size:66
Alignment explanation
Indices: 9382195--9382353 Score: 173
Period size: 64 Copynumber: 2.4 Consensus size: 66
9382185 ATTTAATCCC
* * * * *
9382195 ATGAAAATGTAAGTCCAGTTTAGCTGGCATTGATGAAAAGATTTAAACTTAGTCTAGTTGACACC
1 ATGAAAATCTAAGTCCAGTTTAGCTGGCATTAATGAAAAGATTTAAACCTAATCTAGCTGACACC
9382260 A
66 A
* * ** *
9382261 ATGAAAATTTAA-ACCTAGTTTATTTGGCATCTAATG-AAA-ATTTAAGCCTAAT-TAGCTGACA
1 ATGAAAATCTAAGTCC-AGTTTAGCTGGCAT-TAATGAAAAGATTTAAACCTAATCTAGCTGACA
9382322 CCA
64 CCA
*
9382325 ATGAAAATCTAAGTCCAGTTTAACTGGCA
1 ATGAAAATCTAAGTCCAGTTTAGCTGGCA
9382354 CCTAGGTTTT
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
64 33 0.43
65 14 0.18
66 26 0.34
67 4 0.05
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (66 bp):
ATGAAAATCTAAGTCCAGTTTAGCTGGCATTAATGAAAAGATTTAAACCTAATCTAGCTGACACC
A
Found at i:9382413 original size:61 final size:64
Alignment explanation
Indices: 9382320--9382464 Score: 145
Period size: 66 Copynumber: 2.3 Consensus size: 64
9382310 AATTAGCTGA
* * * *
9382320 CACCAATGAAAATCTAAGTCCAGTTTAACTGGCACCT-AG-G-TTTTAAGCCTAGTTTTGTTAG
1 CACCTATGAAAATTTAAGTCCAATTTAACTGGCACCTGAGAGATTTTAAGCCTAGTTTAGTTAG
* ** * *
9382381 CA-CTCATGAAAATTTAAGTCTAATTTTTCTGGCACTTGAGATAGATTTTAAGCTTAGTTTAGTT
1 CACCT-ATGAAAATTTAAGTCCAATTTAACTGGCACCTGAG--AGATTTTAAGCCTAGTTTAGTT
9382445 AG
63 AG
*
9382447 CACCTATGAAACTTTAAG
1 CACCTATGAAAATTTAAG
9382465 CTTAGTTTAG
Statistics
Matches: 67, Mismatches: 10, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
60 1 0.01
61 28 0.42
62 2 0.03
65 1 0.01
66 33 0.49
67 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (64 bp):
CACCTATGAAAATTTAAGTCCAATTTAACTGGCACCTGAGAGATTTTAAGCCTAGTTTAGTTAG
Found at i:9382563 original size:22 final size:22
Alignment explanation
Indices: 9382522--9382569 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
9382512 CAAGCCTAGA
*
9382522 TTAGCTAGCACATAAACTCATT
1 TTAGCTAGCACATAAACTCAGT
** *
9382544 TTAGCTAGCATGTAAGCTCAGT
1 TTAGCTAGCACATAAACTCAGT
9382566 TTAG
1 TTAG
9382570 TTGGCAATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (22 bp):
TTAGCTAGCACATAAACTCAGT
Found at i:9382650 original size:44 final size:44
Alignment explanation
Indices: 9382544--9382652 Score: 139
Period size: 44 Copynumber: 2.5 Consensus size: 44
9382534 TAAACTCATT
* *
9382544 TTAGCTAGCATGTAAGCTCAGTTTAGTTGGCAATCAAGCCTAGA
1 TTAGCTAGCACGTAAGCTCAGTTTAGCTGGCAATCAAGCCTAGA
* * * *
9382588 CTATCTAGCACATTAGCTCAGTTTAGCTGGCATAT-AAGCCTAGA
1 TTAGCTAGCACGTAAGCTCAGTTTAGCTGGCA-ATCAAGCCTAGA
*
9382632 TTAGCTAGTACGTAAGCTCAG
1 TTAGCTAGCACGTAAGCTCAG
9382653 AATGGCTGAA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 51 0.96
45 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (44 bp):
TTAGCTAGCACGTAAGCTCAGTTTAGCTGGCAATCAAGCCTAGA
Found at i:9382864 original size:33 final size:30
Alignment explanation
Indices: 9382822--9382926 Score: 86
Period size: 32 Copynumber: 3.3 Consensus size: 30
9382812 AAGTCAACTC
*
9382822 AAATTTAAGTCCAGTTTAGCTAGCATCTAATGG
1 AAATTTAAGT-CAGTTTAGCTAGCA-CCAAT-G
**
9382855 AAATTTAAGTTGGTTTAGCTAGCACCAATG
1 AAATTTAAGTCAGTTTAGCTAGCACCAATG
* *
9382885 AAGATTTAAGCTTAATTTAGCT-GCCACCAATG
1 AA-ATTTAAG-TCAGTTTAGCTAG-CACCAATG
*
9382917 CAAAATTAAG
1 -AAATTTAAG
9382927 CTTAGAGTAG
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
30 3 0.05
31 12 0.19
32 35 0.56
33 12 0.19
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.31
Consensus pattern (30 bp):
AAATTTAAGTCAGTTTAGCTAGCACCAATG
Found at i:9382876 original size:32 final size:31
Alignment explanation
Indices: 9382835--9382916 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 31
9382825 TTTAAGTCCA
*
9382835 GTTTAGCTAGCATCTAATGGAA-ATTTAAGTTG
1 GTTTAGCTAGCA-CCAAT-GAAGATTTAAGTTG
*
9382867 GTTTAGCTAGCACCAATGAAGATTTAAGCTTA
1 GTTTAGCTAGCACCAATGAAGATTTAAG-TTG
*
9382899 ATTTAGCT-GCCACCAATG
1 GTTTAGCTAG-CACCAATG
9382917 CAAAATTAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
30 3 0.07
31 12 0.27
32 29 0.66
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (31 bp):
GTTTAGCTAGCACCAATGAAGATTTAAGTTG
Found at i:9382926 original size:32 final size:33
Alignment explanation
Indices: 9382850--9382957 Score: 111
Period size: 32 Copynumber: 3.4 Consensus size: 33
9382840 GCTAGCATCT
* *
9382850 AATGGAAATTTAAG-TT-GGTTTAGCTAG-CACC
1 AATGCAAATTTAAGCTTAGATTTAGCT-GCCACC
9382881 AATG-AAGATTTAAGCTTA-ATTTAGCTGCCACC
1 AATGCAA-ATTTAAGCTTAGATTTAGCTGCCACC
* * *
9382913 AATGCAAAATTAAGCTTAGA-GTAGTTGCCACC
1 AATGCAAATTTAAGCTTAGATTTAGCTGCCACC
9382945 AATGCAAATTTAA
1 AATGCAAATTTAA
9382958 TCCCAAAGTA
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
30 2 0.03
31 12 0.18
32 49 0.74
33 3 0.05
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (33 bp):
AATGCAAATTTAAGCTTAGATTTAGCTGCCACC
Found at i:9382968 original size:32 final size:32
Alignment explanation
Indices: 9382906--9382996 Score: 103
Period size: 32 Copynumber: 2.8 Consensus size: 32
9382896 TTAATTTAGC
* ** *
9382906 TGCCACCAATGCAAAATTAAGCTTAGAGTAGT
1 TGCCACCAATGCAAATTTAAGCCCAAAGTAGT
*
9382938 TGCCACCAATGCAAATTTAATCCCAAAGTAGT
1 TGCCACCAATGCAAATTTAAGCCCAAAGTAGT
*
9382970 TAG-CACCCAGTGCAAATTTAAGCCCAA
1 T-GCCA-CCAATGCAAATTTAAGCCCAA
9382997 TTTAGTTGGC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
32 30 0.60
33 20 0.40
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.23
Consensus pattern (32 bp):
TGCCACCAATGCAAATTTAAGCCCAAAGTAGT
Found at i:9383028 original size:31 final size:33
Alignment explanation
Indices: 9382986--9383064 Score: 99
Period size: 31 Copynumber: 2.5 Consensus size: 33
9382976 CCAGTGCAAA
* * *
9382986 TTTAAGCCCAATTTAGTTGG-CATCAA-GAAAT
1 TTTAAGCCCAATTTAGTTGGTAACCAATAAAAT
*
9383017 TTTAAGGCCAATTTAGTTGGTAACCAATAAAAT
1 TTTAAGCCCAATTTAGTTGGTAACCAATAAAAT
*
9383050 TTTAAGTCCAATTTA
1 TTTAAGCCCAATTTA
9383065 ACTGACATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
31 19 0.46
32 4 0.10
33 18 0.44
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (33 bp):
TTTAAGCCCAATTTAGTTGGTAACCAATAAAAT
Found at i:9383169 original size:22 final size:22
Alignment explanation
Indices: 9383134--9383185 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
9383124 CACCCAAATT
*
9383134 TAAGCCCAGTTTAGTTGACACA
1 TAAGCCCAGATTAGTTGACACA
* * *
9383156 TAAGCCTAGATTAGTTGGCACG
1 TAAGCCCAGATTAGTTGACACA
9383178 TAAGCCCA
1 TAAGCCCA
9383186 AAATTAATTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (22 bp):
TAAGCCCAGATTAGTTGACACA
Found at i:9383799 original size:21 final size:19
Alignment explanation
Indices: 9383775--9383813 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
9383765 TCCTTAAATA
9383775 AAAAAATAAATGAAAATTATG
1 AAAAAATAAAT--AAATTATG
*
9383796 AAAATATAAATAAATTAT
1 AAAAAATAAATAAATTAT
9383814 AAATTATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
21 10 0.59
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (19 bp):
AAAAAATAAATAAATTATG
Found at i:9383834 original size:17 final size:17
Alignment explanation
Indices: 9383796--9383841 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
9383786 GAAAATTATG
*
9383796 AAAA-TATAAATAAATTA
1 AAAATTATAAA-AAAATA
*
9383813 TAAATTATAAAAAAATA
1 AAAATTATAAAAAAATA
9383830 AAAATTATAAAA
1 AAAATTATAAAA
9383842 TGACAAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 19 0.76
18 6 0.24
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
AAAATTATAAAAAAATA
Found at i:9383842 original size:25 final size:24
Alignment explanation
Indices: 9383772--9383883 Score: 95
Period size: 25 Copynumber: 4.6 Consensus size: 24
9383762 AATTCCTTAA
*
9383772 ATAAAAAAAT--AAATGA-AAATT
1 ATAAAAAAATAAAAATTATAAATT
* *
9383793 ATGAAAATATAAATAAATTATAAATT
1 ATAAAAAAAT-AA-AAATTATAAATT
*
9383819 ATAAAAAAATAAAAATTATAAAATG
1 ATAAAAAAATAAAAATTAT-AAATT
* * * *
9383844 ACAAAAAGATAAAAACTATAAATA
1 ATAAAAAAATAAAAATTATAAATT
9383868 ATAAAAAAAATAAAAA
1 AT-AAAAAAATAAAAA
9383884 ATACTTGACC
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
21 8 0.11
24 12 0.17
25 39 0.54
26 13 0.18
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (24 bp):
ATAAAAAAATAAAAATTATAAATT
Found at i:9385936 original size:17 final size:17
Alignment explanation
Indices: 9385914--9385946 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
9385904 ATTGTACTTA
9385914 AAAAAATAATAATATAT
1 AAAAAATAATAATATAT
9385931 AAAAAATAATAATATA
1 AAAAAATAATAATATA
9385947 ATAATTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAAAATAATAATATAT
Found at i:9385940 original size:14 final size:16
Alignment explanation
Indices: 9385916--9385947 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
9385906 TGTACTTAAA
9385916 AAAATAATAAT-ATAT
1 AAAATAATAATAATAT
9385931 AAAA-AATAATAATAT
1 AAAATAATAATAATAT
9385946 AA
1 AA
9385948 TAATTTCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAATAATAATAATAT
Found at i:9386187 original size:26 final size:26
Alignment explanation
Indices: 9386158--9386218 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
9386148 TAAATTAGCA
* *
9386158 AAACCCTAAAGCAAAACT-CTAAAATG
1 AAACCCTAAAAC-AAACTCCTAAAAAG
*
9386184 AAACCCTAAAACGAACTCCTAAAAAG
1 AAACCCTAAAACAAACTCCTAAAAAG
9386210 -AACCCTAAA
1 AAACCCTAAA
9386219 TCTTAGGCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 13 0.42
26 18 0.58
ACGTcount: A:0.54, C:0.26, G:0.07, T:0.13
Consensus pattern (26 bp):
AAACCCTAAAACAAACTCCTAAAAAG
Found at i:9386218 original size:12 final size:12
Alignment explanation
Indices: 9386185--9386218 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
9386175 TCTAAAATGA
*
9386185 AACCCTAAAACG
1 AACCCTAAAAAG
9386197 AACTCCTAAAAAG
1 AAC-CCTAAAAAG
9386210 AACCCTAAA
1 AACCCTAAA
9386219 TCTTAGGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.53, C:0.29, G:0.06, T:0.12
Consensus pattern (12 bp):
AACCCTAAAAAG
Found at i:9389087 original size:26 final size:25
Alignment explanation
Indices: 9389044--9389101 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
9389034 TCTCTCTCTC
* * **
9389044 TTTCTCTCTCTTTTTTTTTCTTTTTT
1 TTTCTCTCTC-TCTCTTTTCTTCATT
9389070 TTTCTCTCTCTCTCTTTTCTTCATT
1 TTTCTCTCTCTCTCTTTTCTTCATT
9389095 TTTCTCT
1 TTTCTCT
9389102 AGATTTATCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 18 0.64
26 10 0.36
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (25 bp):
TTTCTCTCTCTCTCTTTTCTTCATT
Found at i:9396988 original size:14 final size:14
Alignment explanation
Indices: 9396969--9397005 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
9396959 TATTGGCTAT
9396969 TAAATATAAAAAAA
1 TAAATATAAAAAAA
9396983 TAAATAT-AAAAAA
1 TAAATATAAAAAAA
*
9396996 TAGATATAAA
1 TAAATATAAA
9397006 GAACAACTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (14 bp):
TAAATATAAAAAAA
Found at i:9398666 original size:3 final size:3
Alignment explanation
Indices: 9398658--9398696 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
9398648 AAATTAAATT
* *
9398658 TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAT TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9398697 AAGAGAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:9398903 original size:19 final size:18
Alignment explanation
Indices: 9398859--9398901 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 18
9398849 ATATTGGAAA
*
9398859 ATTATCAAATAATAATAAT
1 ATTAT-AAATAATAACAAT
9398878 A--ATAAATAATAACAAT
1 ATTATAAATAATAACAAT
9398894 ATTATAAA
1 ATTATAAA
9398902 ATTTTCAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
16 13 0.62
17 2 0.10
18 5 0.24
19 1 0.05
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (18 bp):
ATTATAAATAATAACAAT
Found at i:9399147 original size:19 final size:19
Alignment explanation
Indices: 9399125--9399186 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
9399115 ACTTTATATG
9399125 AAACTCGAAAGCCTAGGTA
1 AAACTCGAAAGCCTAGGTA
9399144 AAACTCGAAAGCCTAGGTA
1 AAACTCGAAAGCCTAGGTA
*
9399163 AAACTCGAAAGCCTTAGGTG
1 AAACTCGAAAGCC-TAGGTA
9399183 AAAC
1 AAAC
9399187 CCAAAATCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
19 32 0.78
20 9 0.22
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.16
Consensus pattern (19 bp):
AAACTCGAAAGCCTAGGTA
Found at i:9402499 original size:20 final size:20
Alignment explanation
Indices: 9402474--9402512 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
9402464 CTTAATTAGA
9402474 TACCTATGATAAACCAATTT
1 TACCTATGATAAACCAATTT
9402494 TACCTATGATAAACCAATT
1 TACCTATGATAAACCAATT
9402513 AATGAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (20 bp):
TACCTATGATAAACCAATTT
Found at i:9402970 original size:3 final size:3
Alignment explanation
Indices: 9402962--9403043 Score: 74
Period size: 3 Copynumber: 26.0 Consensus size: 3
9402952 GCAAAAAGAG
* * *
9402962 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA CAA CAGA TAAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A T-AA T-AA
* **
9403010 TAAA TAA TGA TAA TAA TAA TAA TGT TAA TAA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9403044 CATGAATGGA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
3 57 0.83
4 11 0.16
5 1 0.01
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:9404132 original size:16 final size:16
Alignment explanation
Indices: 9404111--9404141 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9404101 AAATTTCTAG
9404111 ATTTTAATATTATTAC
1 ATTTTAATATTATTAC
*
9404127 ATTTTATTATTATTA
1 ATTTTAATATTATTA
9404142 TTATTAAAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTTAATATTATTAC
Found at i:9404893 original size:21 final size:22
Alignment explanation
Indices: 9404856--9404908 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
9404846 CGTGTCCGGA
9404856 GTCAATCAGA-TCATGTCTAGG
1 GTCAATCAGACTCATGTCTAGG
*
9404877 GTCAATCAGACT-GTGTCTAGG
1 GTCAATCAGACTCATGTCTAGG
*
9404898 GTCAATTAGAC
1 GTCAATCAGAC
9404909 CGTATTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (22 bp):
GTCAATCAGACTCATGTCTAGG
Found at i:9404951 original size:3 final size:3
Alignment explanation
Indices: 9404911--9405001 Score: 54
Period size: 3 Copynumber: 33.0 Consensus size: 3
9404901 AATTAGACCG
* * * *
9404911 TAT T-T TAT TAT TTT TGT TA- TAT TA- TAT TA- TAG TAT TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
9404955 TA- TAT TA- TAG TAT CAT TGT TA- TAT TAT TAT TAT TAT TAG TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9404999 TAT
1 TAT
9405002 ATGATGTTAC
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
2 16 0.23
3 53 0.77
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:9404958 original size:22 final size:21
Alignment explanation
Indices: 9404933--9405002 Score: 76
Period size: 22 Copynumber: 3.4 Consensus size: 21
9404923 TTTGTTATAT
9404933 TATATTATAGTATTATTATTA
1 TATATTATAGTATTATTATTA
* *
9404954 CTATATTATAGTATCATT-GT-
1 -TATATTATAGTATTATTATTA
9404974 TATATTAT--TATTATTATTA
1 TATATTATAGTATTATTATTA
9404993 GTATATTATA
1 -TATATTATA
9405003 TGATGTTACT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
17 6 0.15
18 1 0.03
19 8 0.20
20 8 0.20
21 1 0.03
22 16 0.40
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.56
Consensus pattern (21 bp):
TATATTATAGTATTATTATTA
Found at i:9405023 original size:3 final size:3
Alignment explanation
Indices: 9405009--9405160 Score: 119
Period size: 3 Copynumber: 50.7 Consensus size: 3
9404999 TATATGATGT
* * * * * * *
9405009 TAC TAT TAC TAC TAC TAC TAC TAC AAC AAC AAC -AA TAAC AAC AAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T-AC TAC TAC
* *
9405054 TAC TAC TAC TAC TAC TAC TAC TAT TAC TAC TAC AAC TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
* * * * * * * *
9405102 TAC TAC TAC TAC AAC AAC -AA TAAC AAC AAC AAC AAC AAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC T-AC TAC TAC TAC TAC TAC TAC TAC
9405147 TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TA
9405161 TTATTATTAT
Statistics
Matches: 129, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
2 2 0.02
3 125 0.97
4 2 0.02
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.25
Consensus pattern (3 bp):
TAC
Found at i:9405657 original size:20 final size:21
Alignment explanation
Indices: 9405620--9405659 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9405610 TCCGAGCAAA
* *
9405620 TTTGGGAAAGTTTGGGATTTT
1 TTTGGAAAAATTTGGGATTTT
9405641 TTTGGAAAAATTT-GGATTT
1 TTTGGAAAAATTTGGGATTT
9405660 GGATGAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (21 bp):
TTTGGAAAAATTTGGGATTTT
Found at i:9406053 original size:37 final size:40
Alignment explanation
Indices: 9406001--9406092 Score: 113
Period size: 37 Copynumber: 2.4 Consensus size: 40
9405991 TTCATTTTTA
9406001 TTTTATTTTTTATTTTC-ATTTATTT-TCATATTTTAAGT
1 TTTTATTTTTTATTTTCAATTTATTTATCATATTTTAAGT
* *
9406039 TTTTA-TTTTTATTTTCAATTTTTTTATCTTATTTT-A-T
1 TTTTATTTTTTATTTTCAATTTATTTATCATATTTTAAGT
9406076 TTTACTATTTTTTATTT
1 TTT--TATTTTTTATTT
9406093 ATTTTATTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
37 15 0.32
38 13 0.28
39 10 0.21
40 9 0.19
ACGTcount: A:0.20, C:0.05, G:0.01, T:0.74
Consensus pattern (40 bp):
TTTTATTTTTTATTTTCAATTTATTTATCATATTTTAAGT
Found at i:9406086 original size:25 final size:24
Alignment explanation
Indices: 9406006--9406101 Score: 81
Period size: 25 Copynumber: 3.8 Consensus size: 24
9405996 TTTTATTTTA
9406006 TTTTTTATTT-TCATTTATTTTCATAT
1 TTTTTTATTTAT--TTTATTTTCA-AT
*
9406032 TTTAAGTT-TTTATTTTTATTTTCAAT
1 TTT--TTTATTTA-TTTTATTTTCAAT
*
9406058 TTTTTTATCTTATTTTATTTT-ACT
1 TTTTTTAT-TTATTTTATTTTCAAT
9406082 ATTTTTTATTTATTTTATTT
1 -TTTTTTATTTATTTTATTT
9406102 AGTAATTCAA
Statistics
Matches: 60, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
24 15 0.25
25 18 0.30
26 11 0.18
27 13 0.22
28 2 0.03
29 1 0.02
ACGTcount: A:0.20, C:0.05, G:0.01, T:0.74
Consensus pattern (24 bp):
TTTTTTATTTATTTTATTTTCAAT
Found at i:9406102 original size:13 final size:12
Alignment explanation
Indices: 9405995--9406101 Score: 56
Period size: 12 Copynumber: 8.2 Consensus size: 12
9405985 TTCTTTTTCA
9405995 TTTTTATTTTAT
1 TTTTTATTTTAT
9406007 TTTTTATTTTCATTT
1 TTTTTATTTT-A--T
*
9406022 ATTTTCATATTTTAAG
1 -TTTT--TATTTT-AT
9406038 TTTTTATTTTTAT
1 TTTTTA-TTTTAT
**
9406051 TTTCAATTTT-T
1 TTTTTATTTTAT
9406062 TTATCTTATTTTAT
1 TT-T-TTATTTTAT
*
9406076 TTTACTATTTT-T
1 TTT-TTATTTTAT
*
9406088 TATTTATTTTAT
1 TTTTTATTTTAT
9406100 TT
1 TT
9406102 AGTAATTCAA
Statistics
Matches: 72, Mismatches: 12, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
11 9 0.12
12 20 0.28
13 20 0.28
14 7 0.10
15 5 0.07
16 4 0.06
18 7 0.10
ACGTcount: A:0.20, C:0.05, G:0.01, T:0.75
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:9410309 original size:18 final size:18
Alignment explanation
Indices: 9410254--9410330 Score: 66
Period size: 18 Copynumber: 4.1 Consensus size: 18
9410244 AAAGAAAAGG
* *
9410254 AAAAAGGAAAAAGCAAACA
1 AAAAAAGAAAAAGTAAA-A
*
9410273 AAAAAAGGGAAAAAATAAAA
1 AAAAAA--GAAAAAGTAAAA
*
9410293 AATAAAA-AATAAGTAAAA
1 AA-AAAAGAAAAAGTAAAA
9410311 AAAAAAGAAAAAGTGAAAA
1 AAAAAAGAAAAAGT-AAAA
9410330 A
1 A
9410331 GAGAAACAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
17 4 0.09
18 17 0.36
19 10 0.21
20 3 0.06
21 13 0.28
ACGTcount: A:0.78, C:0.03, G:0.13, T:0.06
Consensus pattern (18 bp):
AAAAAAGAAAAAGTAAAA
Found at i:9411945 original size:121 final size:120
Alignment explanation
Indices: 9411760--9412378 Score: 462
Period size: 121 Copynumber: 5.1 Consensus size: 120
9411750 GTCAGTCTTA
* ** * * ** * * * *
9411760 GTCACTTTATCTTTTTAACTC-GGGATTTTGTCTTGGTCATTTGATCTCGGCTCTATCCAAATCA
1 GTCACTTTATCTTTTTAACTCATGG-TTTCATCCTGATCATTCAATCTTGGCTCTGTCTAGATCA
* * * * * * * *
9411824 TTTTTTTGATTCGTGGTTTCATCCCAGTTATTCATCTTTGACCTCAACTTGATCCTG
65 TTTTTTTGACTCGCGGTTCCATCCCAGTCA-CCATCTTTAACCTCGACTCGATCCTG
*** * * * *
9411881 GTTGGTTTATCTTTTTGACTCATGATTTCATCCTGATCATTCAATTTTGACTCTGTCTAGATCA-
1 GTCACTTTATCTTTTTAACTCATGGTTTCATCCTGATCATTCAATCTTGGCTCTGTCTAGATCAT
* * * * *
9411945 TTTTTTGACTCGCGATTCCATCCCACTCAACCATCTTCAACCTCGACTCGGTCCTA
66 TTTTTTGACTCGCGGTTCCATCCCAGTC-ACCATCTTTAACCTCGACTCGATCCTG
* * *
9412001 GTCATTTTATCTTTTCAACTCATGGTTTCATCCTGATCATTCAATCTTGGCTCTATCTAGATCAT
1 GTCACTTTATCTTTTTAACTCATGGTTTCATCCTGATCATTCAATCTTGGCTCTGTCTAGATCAT
** * * * * *
9412066 TTTCCTGATTCGCGGTTCCATCTC-GATCAGCTATCTTTAACCTCGACTCGGTTCTG
66 TTTTTTGACTCGCGGTTCCATCCCAG-TCA-CCATCTTTAACCTCGACTCGATCCTG
* * * * *
9412122 GTCACTTTATCTTTTTAACTCATGGTTTTATCCT-AGTCATTCGATCTCGGTTCTGTCTAGATTA
1 GTCACTTTATCTTTTTAACTCATGGTTTCATCCTGA-TCATTCAATCTTGGCTCTGTCTAGATCA
* ** * * *
9412186 -TTTTTTGACTAGTAGTTTCAT-CCAGGTCAGCCATCTTTAATCTCGACTTGATCCTG
65 TTTTTTTGACTCGCGGTTCCATCCCA-GTCA-CCATCTTTAACCTCGACTCGATCCTG
* * * * * *
9412242 GTCACTTTATCTTTTTGACTCGTGGTTTCATCTTGGTCATTCGATCTTGGTTCTAGTCTAGATCA
1 GTCACTTTATCTTTTTAACTCATGGTTTCATCCTGATCATTCAATCTTGGCTCT-GTCTAGATCA
* * * * * * * * * * *
9412307 -TTTGTTGACTTGCGATTCTATCTCAATCAATCACCTTTGACCTCGACT-TAGTCATG
65 TTTTTTTGACTCGCGGTTCCATCCCAGTC-ACCATCTTTAACCTCGACTCGA-TCCTG
9412363 GTCACTTTATCTTTTT
1 GTCACTTTATCTTTTT
9412379 GTAGTTTCAT
Statistics
Matches: 392, Mismatches: 93, Indels: 26
0.77 0.18 0.05
Matches are distributed among these distances:
119 1 0.00
120 185 0.47
121 202 0.52
122 4 0.01
ACGTcount: A:0.18, C:0.24, G:0.14, T:0.43
Consensus pattern (120 bp):
GTCACTTTATCTTTTTAACTCATGGTTTCATCCTGATCATTCAATCTTGGCTCTGTCTAGATCAT
TTTTTTGACTCGCGGTTCCATCCCAGTCACCATCTTTAACCTCGACTCGATCCTG
Done.