Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 7 of 93
Found at i:843828 original size:13 final size:12
Alignment explanation
Indices: 843789--843906 Score: 55
Period size: 12 Copynumber: 9.8 Consensus size: 12
843779 TGTTATTTTT
*
843789 TATTTTTTTAT-
1 TATTTTATTATA
*
843800 TATTTTATTCTA
1 TATTTTATTATA
843812 TATTTTATGTATA
1 TATTTTAT-TATA
*
843825 TATTTTCCTT-TA
1 TATTTT-ATTATA
* *
843837 TATCTTATGTATT
1 TATTTTAT-TATA
* *
843850 TATTAT-TTATT
1 TATTTTATTATA
* *
843861 TATTATTACTATT
1 TATT-TTATTATA
*
843874 TA-TTAATATATA
1 TATTTTAT-TATA
* *
843886 TATTTTATTTTT
1 TATTTTATTATA
843898 TATTTTATT
1 TATTTTATT
843907 TAGTTTTGTA
Statistics
Matches: 81, Mismatches: 17, Indels: 17
0.70 0.15 0.15
Matches are distributed among these distances:
11 20 0.25
12 35 0.43
13 25 0.31
14 1 0.01
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (12 bp):
TATTTTATTATA
Found at i:843906 original size:17 final size:19
Alignment explanation
Indices: 843886--843925 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
843876 TTAATATATA
*
843886 TATTTTA-TTTTTTA-TTT
1 TATTTTAGTTTTGTATTTT
843903 TA-TTTAGTTTTGTATTTT
1 TATTTTAGTTTTGTATTTT
843921 TATTT
1 TATTT
843926 ATCTAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
16 4 0.21
17 8 0.42
18 5 0.26
19 2 0.11
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (19 bp):
TATTTTAGTTTTGTATTTT
Found at i:844907 original size:6 final size:5
Alignment explanation
Indices: 844894--844982 Score: 57
Period size: 5 Copynumber: 18.6 Consensus size: 5
844884 CCTTTTTACC
* ** *
844894 TTTAT TTTAT TTT-T TTT-C TTGGT TTTACT TTTCT -TTAT TTTAT TTTA-
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT
*
844941 TTT-T TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT TTTAT TTT
1 TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
844983 CTTTAAATAA
Statistics
Matches: 66, Mismatches: 9, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
3 3 0.05
4 15 0.23
5 38 0.58
6 6 0.09
7 4 0.06
ACGTcount: A:0.13, C:0.06, G:0.03, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:844963 original size:30 final size:30
Alignment explanation
Indices: 844927--844983 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
844917 TTTACTTTTC
*
844927 TTTATTTTATTTTATTTTTTTATTTTCACT
1 TTTATTTTATTTTATTATTTTATTTTCACT
*
844957 TTTATTTTGTTTTATTATTTTATTTTC
1 TTTATTTTATTTTATTATTTTATTTTC
844984 TTTAAATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (30 bp):
TTTATTTTATTTTATTATTTTATTTTCACT
Found at i:845063 original size:60 final size:58
Alignment explanation
Indices: 844999--845334 Score: 492
Period size: 60 Copynumber: 5.7 Consensus size: 58
844989 ATAAAAATAA
844999 AAAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAA-AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
** * * * *
845058 AAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAGTTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
*
845117 CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
845175 AAAAAAATCAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* ** * *
845235 AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
1 AAAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
845295 AAAAAAAAATTTTTAGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
845335 TCCTGCATAA
Statistics
Matches: 252, Mismatches: 22, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
58 84 0.33
59 56 0.22
60 112 0.44
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.35
Consensus pattern (58 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:846151 original size:26 final size:26
Alignment explanation
Indices: 846113--846165 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
846103 GGCTCAAAAT
846113 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
846139 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
846165 C
1 C
846166 CGAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:846666 original size:26 final size:26
Alignment explanation
Indices: 846614--846666 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
846604 TCGATCCGAT
*
846614 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
846640 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
846666 C
1 C
846667 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:847914 original size:158 final size:159
Alignment explanation
Indices: 847545--847919 Score: 375
Period size: 159 Copynumber: 2.4 Consensus size: 159
847535 GCATAGACAA
*
847545 GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTTAACCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* * * * *
847610 AGGTAGAATGTGCAAGCCAGGGATTGGCTCGGTCCTCCTCTGCGTGCTGCCAGTCCCGCTACCAC
66 AGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCTCCCCTGCGTGCTGCCAGTCCCGCTACCAC
* *
847675 AACCCTCCATCTGGCTAGGGCTTAGACATT
131 AACCCTCCATCTGGCCAGAGCTTAGA-ATT
* * * * * * *** *
847705 -GAATGAATTCCCTATGCCTAAACCAACCCACGAAA-TAGGCGTACGGGCGCTCAGTTGGCCGGA
1 GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGA-GCGTGCGGGCGCTCAACCGACCGGA
** * * * *
847768 GAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCC-CCCCTGCGTGCTGTC-GATCCTGCTGCT
65 GAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCTCCCCTGCGTGCTGCCAG-TCCCGCTACC
* * * *
847831 GCAACCCTCGATCTGATCCA-ATCTTAG-ATT
129 ACAACCCTCCATCTG-GCCAGAGCTTAGAATT
* * **
847861 GGGAATGAACTCCGTATGCTTAAGTTAACCCACGAAACGAGCGTGCGAACGCTCAACCG
1 -GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
847920 GTTGGAGAGG
Statistics
Matches: 168, Mismatches: 41, Indels: 14
0.75 0.18 0.06
Matches are distributed among these distances:
156 3 0.02
157 1 0.01
158 81 0.48
159 83 0.49
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
AGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCTCCCCTGCGTGCTGCCAGTCCCGCTACCAC
AACCCTCCATCTGGCCAGAGCTTAGAATT
Found at i:848074 original size:26 final size:26
Alignment explanation
Indices: 848036--848088 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
848026 CCGATCTGAT
848036 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
848062 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTATATG
848088 C
1 C
848089 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:849617 original size:26 final size:26
Alignment explanation
Indices: 849588--849640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
849578 CTGATCCAAT
*
849588 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
*
849614 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
849640 C
1 C
849641 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:850298 original size:26 final size:26
Alignment explanation
Indices: 850262--850314 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
850252 TTGATCCAAT
850262 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
850288 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
850314 C
1 C
850315 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:851348 original size:159 final size:157
Alignment explanation
Indices: 851046--851547 Score: 460
Period size: 159 Copynumber: 3.2 Consensus size: 157
851036 ACTCCGCATG
*
851046 CTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * * * * **
851110 CCGGTTGAAGAGGCAGAATGCGCAAGTCGGGGACCGACCC-AGTCCCCCCCTGTGTGCTATCGAT
65 CCGGTCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGA-T-CCCCCTTGCGTGCTGCCGAT
* *
851174 CCTGCTATCAGAACCCTCAGTCCGATCCGAT
127 CCTGCTACCACAACCCTCAGTCCGATCCGAT
* * * * *
851205 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* *
851270 CGGTCGGAGAGGCATAATGCGCCAGCCAGGGATCGGCCCGATCCCCCTTTGCGTGCTGCCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGATCCCCC-TTGCGTGCTGCCGATCC
* * * * * **
851335 CGCTACCACAACCCTCGGTTCG-GCTGGGG
129 TGCTACCACAACCCTCAGTCCGATC-CGAT
* ** * *
851364 CTTGGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * * * * *
851429 CAG-CTGGAGAGGCAGAATACGCAAGTAGGGGATCGGCCCGGTCCCTCTTACGTG-TGCCGATCC
66 CGGTC-GGAGAGGCAGAATGCGCAAGCA-GGGATCGGCCCGATCCCCCTTGCGTGCTGCCGATCC
* * * **
851492 TGCTGCCGCAACCCT-TGATCC-AGTTTGAT
129 TGCTACCACAACCCTCAG-TCCGA-TCCGAT
* *
851521 CTTAAACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
851548 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 61, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 45 0.16
158 15 0.05
159 211 0.77
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCTTGCGTGCTGCCGATCCTG
CTACCACAACCCTCAGTCCGATCCGAT
Found at i:851557 original size:26 final size:26
Alignment explanation
Indices: 851521--851573 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
851511 CCAGTTTGAT
* *
851521 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
* *
851547 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
851573 C
1 C
851574 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:851935 original size:26 final size:26
Alignment explanation
Indices: 851896--851952 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
851886 ATGCAAAAAA
851896 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
851922 TCTTAGACAT-GGAATGAACTCCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
*
851948 GCTTA
1 TCTTA
851953 AGCCAAACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:852228 original size:26 final size:26
Alignment explanation
Indices: 852182--852236 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
852172 CTCTGCGTGC
*
852182 TGCTTAGACTGGGAATGAACTCCGTA
1 TGCTTAGACTGGGAATAAACTCCGTA
852208 TGCTTAGACTAGGG-ATAAACTCCGTA
1 TGCTTAGACT-GGGAATAAACTCCGTA
852234 TGC
1 TGC
852237 CTATGTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TGCTTAGACTGGGAATAAACTCCGTA
Found at i:854147 original size:159 final size:157
Alignment explanation
Indices: 853761--854229 Score: 534
Period size: 159 Copynumber: 3.0 Consensus size: 157
853751 CTGTCGATCC
* * * * *
853761 TGCTGCCGGTCCCGCAGCCACAACCCTCGCTCCGGCTGGGGCTTAGATATGGAATGAACTCCCTA
1 TGCTACCGGTCCCGCAGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTA
* ** * ** *
853826 TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCATTCAGCAGGCCAGAAAGGCAGAATGCGCAA
66 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAA
*
853891 GCC-GAGGATCGGCCCAATCCCCCTACG
131 GCCAG-GGATCGGCCCGATCCCCCTACG
* * ** * * * * ** *
853918 TGCTATCGATCTTGCTGTCGCAACCCTCAGT-TCGATCT-GATCTTAGAC-TGGGAATGAACTCT
1 TGCTACCGGTCCCGCAGCCACAACCCTCGGTCT-GA-CTGGGGCTTAGACAT-GGAATGAACTCC
* * * * * * * *
853980 GTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAGCCGATCGGAGAGGTATAATGCG
63 CTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCG
*
854045 CAAGCCAGGGATCGACCCGATCTCCCTCTACG
128 CAAGCCAGGGATCGGCCCGATC-CCC-CTACG
854077 TGCTACCGGTCCCGCAGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTACCGGTCCCGCAGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTA
854142 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCC-AGTCAGAGAGGCAGAATGCGCA
66 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGA-TCAGAGAGGCAGAATGCGCA
*
854206 AGCTAGGGATCGGCCCGATCCCCC
130 AGCCAGGGATCGGCCCGATCCCCC
854230 CGCGTGCTGT
Statistics
Matches: 248, Mismatches: 54, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 109 0.44
158 12 0.05
159 124 0.50
160 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (157 bp):
TGCTACCGGTCCCGCAGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAA
GCCAGGGATCGGCCCGATCCCCCTACG
Found at i:854304 original size:26 final size:26
Alignment explanation
Indices: 854275--854327 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
854265 CCGATCTGAT
854275 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
854301 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
854327 C
1 C
854328 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:854692 original size:26 final size:26
Alignment explanation
Indices: 854654--854706 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
854644 TCGGTCCGAT
*
854654 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
854680 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
854706 C
1 C
854707 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:854814 original size:366 final size:350
Alignment explanation
Indices: 853959--854816 Score: 794
Period size: 366 Copynumber: 2.4 Consensus size: 350
853949 TCGATCTGAT
* * * * *
853959 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGA
* * * *
854024 CGATCGGAGAGGTATAATGCGCAAG-CCAGGGATCGACCCGAT-CTCC-CT-C--T--A-CGTGC
66 CGGTCGGAGAGGTATAATGCGCAAGTCGA-GGATCGACCCGATCCCCCTCTGCTGTCGATCCTGC
*
854080 TACCGGTCCCGCAGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGC
130 TACCGGTCCCGCAGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGC
* * * * *
854145 CTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCAGTCAGAGAGGCAGAATGCGCAAGCT
195 CTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCAGTCAGAGAGGCAAAATGCGCAAGCT
* * * * *
854210 AGGGATCGGCCCGATCCCCCCGCGTGCTGTCGATCTTACTGTCGTAACCCTCGATCCGATCTGAT
260 AGGGATCAGCCCGATCCCCCCGCGTGCTGTCGATCCTACTGCCATAACCCTCGATCCGATCCGAT
854275 CTTAGACTGGGAATGAACTCCGTATG
325 CTTAGACTGGGAATGAACTCCGTATG
* * * * * * **
854301 CTTAGACTAGGGATGAACTCCGTATGCCTGAGTCAACCCATGAAACGAGCATGCTGTCATTCAGA
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGA
* * * * * * *
854366 CGGCCGAAGA-CTCATAATGTGTAATTCGAGGATC-AGCTCGATCCCCCTCTGCATGCTGTCGAT
66 CGGTCGGAGAGGT-ATAATGCGCAAGTCGAGGATCGA-CCCGAT-CCCC-CT-C-TGCTGTCG--
* * * *
854429 CCCACTGCTGGTTCTGCTACTGGTCCTGCTGCCACAACCCTCGGTCCG-GTGGGGGCTTAGACAT
123 ---A-T-C-----CTGCTACCGGTCCCGCAGCCACAACCCTCGGTCCGACT-GGGGCTTAGACAT
*
854493 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACC-GATC-GA
177 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCAG-TCAG-
854556 AGAGGCAAAATGCGCAAG-TCAGGGATCAGCCCGATCCCCCCTGCGTGCTACTGATCCTGCTGAT
240 AGAGGCAAAATGCGCAAGCT-AGGGATCAGCCCGATCCCCCC-GCGTG---CTG----T-C-GA-
* * * *
854620 GGTCCTACTGCCATAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
293 --TCCTACTGCCATAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
854680 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTACGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * *
854744 TCGGTCGGAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCATACGTGCTGTCGATCC
65 ACGGTCGGAGAGGTATAATGCGCAAGTCGAGGATCGACCCGATCCCCC-T-C-TGCTGTCGATCC
854809 TGCTACCG
127 TGCTACCG
854817 TAACCCTTGG
Statistics
Matches: 401, Mismatches: 67, Indels: 72
0.74 0.12 0.13
Matches are distributed among these distances:
341 2 0.00
342 79 0.20
343 2 0.00
344 2 0.00
345 1 0.00
347 1 0.00
348 1 0.00
349 1 0.00
351 1 0.00
358 1 0.00
361 1 0.00
365 4 0.01
366 142 0.35
367 5 0.01
370 3 0.01
371 1 0.00
372 1 0.00
373 1 0.00
374 1 0.00
375 1 0.00
376 2 0.00
377 1 0.00
378 15 0.04
379 130 0.32
380 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (350 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGA
CGGTCGGAGAGGTATAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTGCTGTCGATCCTGCT
ACCGGTCCCGCAGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCC
TAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCAGTCAGAGAGGCAAAATGCGCAAGCTA
GGGATCAGCCCGATCCCCCCGCGTGCTGTCGATCCTACTGCCATAACCCTCGATCCGATCCGATC
TTAGACTGGGAATGAACTCCGTATG
Found at i:855184 original size:26 final size:26
Alignment explanation
Indices: 855155--855207 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
855145 TCGGTCCGAT
855155 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
855181 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
855207 C
1 C
855208 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:855419 original size:501 final size:501
Alignment explanation
Indices: 854634--856248 Score: 1402
Period size: 501 Copynumber: 3.3 Consensus size: 501
854624 CTACTGCCAT
*
854634 AACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACT
1 AACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
* * * *
854699 CCGTATGCCTAAGCCAACCCACGGAACGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGTAGAATG
66 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATG
* ** *
854764 CGCAAGTCGAGGATCGACCCGGTCCCCCATACGTGCTGTCGATCCTGCTACCGTAACCCTTGGTC
131 CGCAAGCCGAGGATCGACCCGGTCCCCCATACGTGCTGTCGATCCTGCTACCACAACCCTCGGTC
* * * * * *
854829 CGGTCTGATCTTAGACAGGGAATGAAGTCCGTATGCCTACGTCAACCCATGAGACGAGCGTGCGG
196 CGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCGTACGG
** * * * *
854894 GCGTTGAGCTGGTAGGAAAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTT-TGCGTG
261 GCACTGAGCCGATACGAAAGGCATAATGCACAAGCCGGGGATCGGCCCGGT-CCCCTTCTACGTG
* *** *
854958 CTACT-GGCCCCGGTGCCACAACCCTCGGTTCGACTAGGGCTTAGACATGGAATGAACTCCCTAT
325 CT-CTCGACCCCACAGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTAT
* * *
855022 GCCTAAGCCATCCCATGAAATGGCCGTGCGGGCGCTCAGCTGGCTGGAATGGTAGAATGCGTAAG
389 GCCTAAACCATCCCATCAAACGGCCGTGCGGGCGCTCAGCTGGCTGGAATGGTAGAATGCGTAAG
* * * *
855087 CCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCTGATCCTACTGTCGC
454 CCAAGGATCGGCCCGGTCCACCCTACGTGCTGCCGATCCTACTGTCGC
* * *
855135 AACCTTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAAC
1 AACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAAC
* ** * * *
855199 TCTGTATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAAT
65 TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAAT
** * ** * * *
855264 GCGTTAGCCGAGGATCGGCTTGGTCCCTCACTATGTGCTGTCGATCCTGC-GCCACAACCCTCGG
130 GCGCAAGCCGAGGATCGACCCGGTCCCCCA-TACGTGCTGTCGATCCTGCTACCACAACCCTCGG
* * * *
855328 TCTGGTCTGATCTTAGACAGGGAATGAACTCTGTATGCATAAGTCAACCCATAAAATGAGTGTAC
194 TCCGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCGTAC
* *
855393 GGGCACTGAGCCGAT-CGAAGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCTTTCTACG
259 GGGCACTGAGCCGATACGAA-AGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCTTCTACG
* * * * * *
855457 TGCTGTCGATCCCACAGCCATAACCCTCTGTCCGACTGGGGCTTAGACATGGAATGAACTCTCTA
323 TGCTCTCGACCCCACAGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTA
* *
855522 TGCCTAAACCATCCCATCAAACGGCCGTGCGGGCGCTCGGCTGGCTGGAGTGGTAGAATGCGTAA
388 TGCCTAAACCATCCCATCAAACGGCCGTGCGGGCGCTCAGCTGGCTGGAATGGTAGAATGCGTAA
* ** * *
855587 GTCAAGGATCGGCCCGGTCCACGTTACGTGTTGCCGATCCTACTGTCGT
453 GCCAAGGATCGGCCCGGTCCACCCTACGTGCTGCCGATCCTACTGTCGC
* *
855636 AACCCTCGGTCCGGTCCGATCTTACACTGGGAATG-A------A--C-T-----T----T--A--
1 AACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
* * * * * * * * * ** * *
855678 ---TATGCCTAAGTCAACCTACAAAATGATCGTACGAGCGTTGAGCTGGCCGGAGAGGCATAATA
66 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATG
* * * * * * * * *
855740 CGCGA-CTCGGGGATCGACTCGGTCCCCCTCTACATGCTGTCGGTCCCGCTGCCACAACCCTCGA
131 CGCAAGC-CGAGGATCGACCCGGTCCCCC-ATACGTGCTGTCGATCCTGCTACCACAACCCTCGG
* * * * * * * * *
855804 TCCGG-CTAGAGCTTACACATGGAATGAACTTCC-TATGCCTAAGCCAACCCATGAAATGGGTGT
194 TCCGGTCT-GATCTTAGACAGGGAATGAAC-TCCGTATGCATAAGTCAACCCATAAAACGAGCGT
** * * * * * * * * * * * *
855867 GTGGGCGCTCATCCGACT-GGAGAGGCAGAATGCACAAGCCAGGGATCGACGCGATCCCC-CCTG
257 ACGGGCACTGAGCCGA-TACGAAAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCTTCTA
* * ** * * *
855930 CGTGCTGC-CAATCCTGCTGCCACAACCCTCGGTCCAACTAGGGCTTAGACATGGAACGAACTCC
321 CGTGCT-CTCGACCCCACAGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCC
* * * * * * * * *
855994 CTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAGCCGGCCGGAGA-GGCAGAATGC
385 CTATGCCTAAACCATCCCATCAAACGGCCGTGCGGGCGCTCAGCTGGCTGGA-ATGGTAGAATGC
* * * * * * * * * * *
856058 GCAAGTCGAGAATCAGCCCGGTCC-CTCCTGCGTGCTGTCAATCCTGCTTTTGC
449 GTAAGCCAAGGATCGGCCCGGTCCAC-CCTACGTGCTGCCGATCCTACTGTCGC
* * * * * *
856111 AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TTGGGGATTAAC
1 AACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAAC
* * * * * * * *
856175 TTCATATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAACCGATCGGAGAGGCATAAT
65 TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAAT
*
856240 GCGTAAGCC
130 GCGCAAGCC
856249 AGGGATCAGC
Statistics
Matches: 893, Mismatches: 180, Indels: 82
0.77 0.16 0.07
Matches are distributed among these distances:
474 2 0.00
475 260 0.29
476 103 0.12
477 5 0.01
480 1 0.00
482 2 0.00
484 1 0.00
485 1 0.00
487 1 0.00
489 1 0.00
491 1 0.00
492 1 0.00
494 2 0.00
496 1 0.00
500 11 0.01
501 481 0.54
502 19 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (501 bp):
AACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATG
CGCAAGCCGAGGATCGACCCGGTCCCCCATACGTGCTGTCGATCCTGCTACCACAACCCTCGGTC
CGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCGTACGG
GCACTGAGCCGATACGAAAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCTTCTACGTGC
TCTCGACCCCACAGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGC
CTAAACCATCCCATCAAACGGCCGTGCGGGCGCTCAGCTGGCTGGAATGGTAGAATGCGTAAGCC
AAGGATCGGCCCGGTCCACCCTACGTGCTGCCGATCCTACTGTCGC
Found at i:855861 original size:159 final size:157
Alignment explanation
Indices: 855656--856055 Score: 358
Period size: 158 Copynumber: 2.5 Consensus size: 157
855646 CCGGTCCGAT
** * * ** * *
855656 CTTACAC-TGGGAATGAACTTTATATGCCTAAGTCAACCTACAAAATGATCGTACGAGCGTTGAG
1 CTTACACAT-GGAATGAACTTCCTATGCCTAAGCCAACCCATGAAATGAT-GTACGAGCGCTCAG
* * * * * * * * * **
855720 CTGGCCGGAGAGGCATAATACGCGA-CTCGGGGATCGACTCGGTCCCCCTCTACATGCTGTCGGT
64 CCGACCGGAGAGGCAGAATACACAAGC-CAGGGATCGACGCGATCCCCC-CTACATGCTGCCAAT
**
855784 CCCGCTGCCACAACCCTCGATCCGGCTAGAG
127 CCCGCTGCCACAACCCTCGATCCAACTAGAG
* ** * *
855815 CTTACACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAATGGGTGTGTGGGCGCTCATC
1 CTTACACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAAT-GATGTACGAGCGCTCAGC
* * * * *
855880 CGACTGGAGAGGCAGAATGCACAAGCCAGGGATCGACGCGATCCCCCCTGCGTGCTGCCAATCCT
65 CGACCGGAGAGGCAGAATACACAAGCCAGGGATCGACGCGATCCCCCCTACATGCTGCCAATCCC
* *
855945 GCTGCCACAACCCTCGGTCCAACTAGGG
130 GCTGCCACAACCCTCGATCCAACTAGAG
* * * *
855973 CTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATG--CGGGCGCTCA
1 CTTACACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAAT--G-ATGTACGAGCGCTCA
*
856036 GCCGGCCGGAGAGGCAGAAT
63 GCCGACCGGAGAGGCAGAAT
856056 GCGCAAGTCG
Statistics
Matches: 195, Mismatches: 41, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
158 105 0.54
159 84 0.43
160 6 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTACACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAATGATGTACGAGCGCTCAGCC
GACCGGAGAGGCAGAATACACAAGCCAGGGATCGACGCGATCCCCCCTACATGCTGCCAATCCCG
CTGCCACAACCCTCGATCCAACTAGAG
Found at i:855959 original size:317 final size:317
Alignment explanation
Indices: 855230--855964 Score: 694
Period size: 317 Copynumber: 2.3 Consensus size: 317
855220 ACGAAATGAG
* *** * * ** *
855230 CGTGCGGGTGCTCAGCCGA-TCGGAGAGGCAGAATGCGTTAGCCGAGGATCGGCTTGGTCC-CTC
1 CGTGCGGGCGCTCAGCCGACT-GGAGAGGCAGAATGCACAAGCCAAGGATCGACCCGATCCAC-C
* * * * *
855293 ACTATGTGCTGTCGATCCTGC-GCCACAACCCTCGGTCTGGTCTGATCTTAGACAGGGAATGAAC
64 -CTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTACACAGGGAATGAAC
* * * *
855357 TCTGTATGCATAAGTCAACCCATAAAATGAGTGTACGGGCACTGAGCCGATCGAAGAGGCATAAT
128 TCTATATGCATAAGTCAACCCACAAAATGAGTGTACGAGCACTGAGCCGACCGAAGAGGCATAAT
* * ** * *
855422 GCACAAGCCGGGGATCGGCCTGGTCCCTTTCTACGTGCTGTCGATCCCACAGCCATAACCCTCTG
193 ACACAAGCCGGGGATCGACCTGGTCCCCCTCTACATGCTGTCGATCCCACAGCCACAACCCTCTG
* * * *
855487 TCCGACTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAACCATCCCATCAAACGGC
258 TCCGACTAGAGCTTACACATGGAATGAACTCTCTATGCCTAAACCAACCCATCAAACGGC
* * * * * ** * * * **
855547 CGTGCGGGCGCTCGGCTGGCTGGAGTGGTAGAATGCGTAAGTCAAGGATCGGCCCGGTCCACGTT
1 CGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCACAAGCCAAGGATCGACCCGATCCACCCT
* * * ** * *
855612 ACGTGTTGCCGATCCTACTGTCGTAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTTT
66 ACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTACACAGGGAATGAACTCT
* * ** * * *
855677 ATATGCCTAAGTCAACCTACAAAATGA-TCGTACGAGCGTTGAGCTGGCCGGAGAGGCATAATAC
131 ATATGCATAAGTCAACCCACAAAATGAGT-GTACGAGCACTGAGCCGACCGAAGAGGCATAATAC
* * * * *
855741 GCGA-CTCGGGGATCGA-CTCGGTCCCCCTCTACATGCTGTCGGTCCCGCTGCCACAACCCTC-G
195 ACAAGC-CGGGGATCGACCT-GGTCCCCCTCTACATGCTGTCGATCCCACAGCCACAACCCTCTG
* * * * *
855803 ATCCGGCTAGAGCTTACACATGGAATGAACT-TCCTATGCCTAAGCCAACCCATGAAATGGG
258 -TCCGACTAGAGCTTACACATGGAATGAACTCT-CTATGCCTAAACCAACCCATCAAACGGC
* * * * * *
855864 TGTGTGGGCGCTCATCCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCGACGCGATCCCCCCT
1 CGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCACAAGCCAAGGATCGACCCGATCCACCCT
* *
855929 GCGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCC
66 ACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCC
855965 AACTAGGGCT
Statistics
Matches: 329, Mismatches: 81, Indels: 16
0.77 0.19 0.04
Matches are distributed among these distances:
316 21 0.06
317 306 0.93
318 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (317 bp):
CGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCACAAGCCAAGGATCGACCCGATCCACCCT
ACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTACACAGGGAATGAACTCT
ATATGCATAAGTCAACCCACAAAATGAGTGTACGAGCACTGAGCCGACCGAAGAGGCATAATACA
CAAGCCGGGGATCGACCTGGTCCCCCTCTACATGCTGTCGATCCCACAGCCACAACCCTCTGTCC
GACTAGAGCTTACACATGGAATGAACTCTCTATGCCTAAACCAACCCATCAAACGGC
Found at i:856135 original size:158 final size:158
Alignment explanation
Indices: 855787--856157 Score: 426
Period size: 158 Copynumber: 2.3 Consensus size: 158
855777 TGTCGGTCCC
** * *
855787 GCTGCCACAACCCTCGATCCGGCTAGAGCTTACACATGGAATGAACTTCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCAACTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
** * * * *
855852 CCATGAAATGGGTGTGTGGGCGCTCATCCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCGAC
66 CCATGAAATGGGCATGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAGGAATCGAC
*
855917 GCGATCCCCCCTGCGTGCTGCCAATCCT
131 CCGATCCCCCCTGCGTGCTGCCAATCCT
* * *
855945 GCTGCCACAACCCTCGGTCCAACTAGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCAACTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * *
856010 CCATGAAATGGGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGTC-GAGAATC-A
66 CCATGAAATGGGCATGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAG-GAATCGA
* * *
856073 GCCCGGTCCCTCCTGCGTGCTGTCAATCCT
130 -CCCGATCCCCCCTGCGTGCTGCCAATCCT
**** * * * *
856103 GCTTTTGCAACCCTCGATCCGA-TCCGATCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTGCCACAACCCTCGATCCAACT-AGAGCTTAGACAT-GGAATGAACTCCCTATGC
856158 TTAGATTGGG
Statistics
Matches: 178, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
157 4 0.02
158 174 0.98
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTGCCACAACCCTCGATCCAACTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAATGGGCATGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAGGAATCGAC
CCGATCCCCCCTGCGTGCTGCCAATCCT
Found at i:856489 original size:355 final size:355
Alignment explanation
Indices: 855947--856623 Score: 840
Period size: 355 Copynumber: 1.9 Consensus size: 355
855937 CCAATCCTGC
* * *
855947 TGCCACAACCCTCGGTCCAACTAGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCAACTAGGGCTTAGACATGGAACGAACTCCATATACCTAAGCCAACCA
* * * * *
856012 ATGAAATGGGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGTCGAGAATCAGCCC
66 ACGAAACGAGCATGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTCGAGAATCAGCCC
** * ***
856077 GGTCCCTCCTGCGTGCTGTCAATCCTGCTTTTGCAACCCTCGATCCGATCCGATCTTAGACTGGG
131 GACCCCCCCTGCGTGCTGTCAATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGG
* * * * * * *
856142 AATGAACTCCGTATGCTTAGA-TTGGGGATTAACTTCATATGCCTAAGTCAACCCATGAAACGAG
196 AATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAA
* * * * *
856206 TGTGCGGGCGCTCAACCGATCGGAGAGGCATAATGCGTAAGCCAGGGATC-AGCTCGATCCCCCT
260 CGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGA-CCCGATCCCCCT
856270 CTGCGTGTTGTTGATCACGTTACCGGTCTTGT
324 CTGCGTGTTGTTGATCACGTTACCGGTCTTGT
** * * *
856302 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTATATACCTAAGCCAACCA
1 TGCCACAACCCTCGGTCCAACTAGGGCTTAGACATGGAACGAACTCCATATACCTAAGCCAACCA
* * * * * * *
856367 ACGAAGCGAGCGTGCAGGTGCTCATCCAGCCGGAGATGCAGAATGCGTAAGTC-AGGGATC-GAC
66 ACGAAACGAGCATGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTCGA-GAATCAG-C
* * * * * *
856430 CCGACCCCCCCTGCGTTCTGTCGATCCTGCTGCCGCAACCCTTGCTCCGGTCTGATCTTAGACTG
129 CCGACCCCCCCTGCGTGCTGTCAATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTG
*
856495 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
194 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA
* ** * *
856560 ACGTGCGGGTGCTCAGTCGACCGAAGAGGCAGAATGGGTAAGCCGGGGATCGACCCGATCCCCC
259 ACGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCC
856624 CTACGTGCTG
Statistics
Matches: 268, Mismatches: 50, Indels: 8
0.82 0.15 0.02
Matches are distributed among these distances:
354 2 0.01
355 264 0.99
356 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (355 bp):
TGCCACAACCCTCGGTCCAACTAGGGCTTAGACATGGAACGAACTCCATATACCTAAGCCAACCA
ACGAAACGAGCATGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTCGAGAATCAGCCC
GACCCCCCCTGCGTGCTGTCAATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAAC
GTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCTCT
GCGTGTTGTTGATCACGTTACCGGTCTTGT
Found at i:856516 original size:26 final size:26
Alignment explanation
Indices: 856486--856538 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
856476 CCGGTCTGAT
856486 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
856512 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
856538 C
1 C
856539 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:856611 original size:184 final size:184
Alignment explanation
Indices: 856327--856699 Score: 487
Period size: 184 Copynumber: 2.0 Consensus size: 184
856317 TCCGGCTGGG
* * *
856327 GCTTAGACATGGAATGAACTCTATATACCTAAGCCAACCAACGAAGCGAGCGTGCAGGTGCTCAT
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCAACGAAACGAACGTGCAGGTGCTCAT
* * * * *
856392 CCAGCCGGAGATGCAGAATGCGTAAGTCAGGGATCGACCCGACCCCCCCTGCGTTCTGTCGATCC
66 CCAGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGACCCCCCCTACGTGCTGTCGATCC
* *** ** **
856457 TGCTGCCGCAACCCTTGCTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGACGCAACCCTCAATCCGGTCCAATCTTAGACTGACAATGAACTCCGTAT
* * * *
856511 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCAACGAAACGAACGTGCAGGTGCTCA-
* * * *
856576 TCGA-CCGAAGAGGCAGAATGGGTAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATC
65 TCCAGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGACCCCCCCTACGTGCTGTCGATC
* **
856640 CTGCTGACGTAACCCTCAATTTGGTCCAATCTTAGACTGACAATGAACTCCGTAT
130 CTGCTGACGCAACCCTCAATCCGGTCCAATCTTAGACTGACAATGAACTCCGTAT
856695 GCTTA
1 GCTTA
856700 AGTCAACCCA
Statistics
Matches: 161, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
184 158 0.98
185 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCAACGAAACGAACGTGCAGGTGCTCAT
CCAGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGACCCCCCCTACGTGCTGTCGATCC
TGCTGACGCAACCCTCAATCCGGTCCAATCTTAGACTGACAATGAACTCCGTAT
Found at i:856905 original size:159 final size:157
Alignment explanation
Indices: 856511--857013 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 157
856501 AACTCCGTAT
* *
856511 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGA-GTGCGGGTGCTCAG
* * * * *
856576 TCGACCGAAGAGGCAGAATGGGTAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
65 CCGACCGAAGAGGCAGAATGAGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
* ** **
856641 TGCTGACGTAACCCTCAATTTGGTCCAA
130 CGCTGACACAACCCTCAATCCGGTCCAA
* * * * * * *
856669 TCTTAGAC-TGACAATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGTGTTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG-GAGTGCGGGTGCTCA
* * * * *
856733 ACCGGCCGAAGAGGCATAATGAGCAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTATCGGT
64 GCCGACCGAAGAGGCAGAATGAGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTATCGAT
* ****
856798 CCCGCT-ACCACAACCCTCGATCCGGTTGGG
128 CCCGCTGA-CACAACCCTCAATCCGGTCCAA
* * * *
856828 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGTGAGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG-GAGTGCGGGTGCTCAG
* * * * * * *
856893 CCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCC
65 CCGACCGAAGAGGCAGAATGAGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
* * * * * * *
856958 TGTTGTCGCAACCCTCAGTCCAGTCCGA
130 CGCTGACACAACCCTCAATCCGGTCCAA
* *
856986 TCTTAGA-TTGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
857014 TTAGATTGGG
Statistics
Matches: 271, Mismatches: 67, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 149 0.55
159 119 0.44
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGAGTGCGGGTGCTCAGC
CGACCGAAGAGGCAGAATGAGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCC
GCTGACACAACCCTCAATCCGGTCCAA
Found at i:857016 original size:26 final size:26
Alignment explanation
Indices: 856987--857039 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
856977 CCAGTCCGAT
856987 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
* *
857013 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
857039 C
1 C
857040 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:863639 original size:26 final size:26
Alignment explanation
Indices: 863601--863653 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
863591 GGCTCAAAAT
863601 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
863627 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
863653 C
1 C
863654 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:864520 original size:26 final size:26
Alignment explanation
Indices: 864482--864537 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
864472 CCGGCTTGAT
** *
864482 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
864508 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
864534 CTTA
1 CTTA
864538 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:865023 original size:26 final size:26
Alignment explanation
Indices: 864983--865032 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
864973 TGGTCTGATT
*
864983 TTAGACTGGAAATGAACTTCGTATGC
1 TTAGACTGGAAATGAACTCCGTATGC
**
865009 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTGGAAATGAACTCCGTAT
865033 CCCTAAGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCGTATGC
Found at i:865524 original size:26 final size:26
Alignment explanation
Indices: 865483--865538 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
865473 CCGGTCCGAT
*
865483 CCTAGACTGGGAATGAACTCTGTATG
1 CCTAGACTGGGAATGAACTCCGTATG
865509 CCTAGACTAGGG-ATGAACTCCGTATG
1 CCTAGACT-GGGAATGAACTCCGTATG
865535 CCTA
1 CCTA
865539 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CCTAGACTGGGAATGAACTCCGTATG
Found at i:865678 original size:185 final size:184
Alignment explanation
Indices: 865337--865694 Score: 446
Period size: 184 Copynumber: 1.9 Consensus size: 184
865327 TAGAGATGGA
* ** * *
865337 ATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGTGCGGGCGCTCACCCGGCCAGAGACA
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCACCCGCCCAGAGACA
** * * * *
865402 CAGAATGTGTAAGCCGGGGATCGACTCGATCCCCACTGCGTGCTGCCGATCCTACTGTCGCAACC
66 CAGAATGCATAAGCCGAGGATCGACCCGATCCCCACTGCGTGCTGCCGATCCTACTGCCACAACC
* *
865467 CTTAGTCCGGTCCGATCCTAGACTGGGAATGAACTCTGTATGCCTAGACTAGGG
131 CTTAGTCCGATCCGATCCTAGACTGGGAATGAACTATGTATGCCTAGACTAGGG
* * * ** * **
865521 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCACTCAGTCGCCCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCACCCGCCCAGAGACA
* * * * * *
865586 TAGAATGCATAAGCTGAGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAAC
66 CAGAATGCATAAGCCGAGGATCGACCCGAT-CCCCACTGCGTGCTGCCGATCCTACTGCCACAAC
* *
865651 CCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTATGTATGC
130 CCTTAGTCCGATCCGATCCTAGACTGGGAATGAACTATGTATGC
865695 AAAGTCAACC
Statistics
Matches: 144, Mismatches: 29, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
184 75 0.52
185 69 0.48
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCACCCGCCCAGAGACA
CAGAATGCATAAGCCGAGGATCGACCCGATCCCCACTGCGTGCTGCCGATCCTACTGCCACAACC
CTTAGTCCGATCCGATCCTAGACTGGGAATGAACTATGTATGCCTAGACTAGGG
Found at i:865936 original size:159 final size:158
Alignment explanation
Indices: 865521--866290 Score: 696
Period size: 158 Copynumber: 4.9 Consensus size: 158
865511 TAGACTAGGG
* * * * ** *
865521 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCACTCAG-TCGCCCGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCT-GGCCGGAGAG
* ** * * * * *
865585 GTAGAATGCATAAGCTGAGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAA
65 GCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAA
* * * ** **
865650 CCCTTGGTCCGATCCGATCTTAGAC-TGGGA
130 CCCTCGATCTG-TTGGGGCTTAGACAT-GGA
*** * * * * ** **
865680 ATGAACTATGTATG-CAAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCAGCCAAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCGGAGAGG
* * * * *
865744 CATAATGCACAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAAC
66 CAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAAC
*
865809 CCTCGATCTTGTTGGGGCTTAAACATGGA
131 CCTCGATC-TGTTGGGGCTTAGACATGGA
* * *
865838 ATGTAA-TCCCTATGCCTAAGCCAACCCACGAAAGGCGCGTGCGGACT-CTCAGCTGGCCGGAGA
1 ATG-AACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-GTGCTCAGCTGGCCGGAGA
* * * * *
865901 GGCAGAATGCGCAAGCTGAGGATCGGCTCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGCA
64 GGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACA
* * **
865965 ACCCTCGATCCGATTTGATCTTAGAC-TGAGA
129 ACCCTCGATCTG-TTGGGGCTTAGACATG-GA
* * * * * * * ** *
865996 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGGGTGCTAAGCCGATCGTAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCGGAGAGG
*
866061 CATAATGCGCAAGCC-AGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAA
66 CAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAA
866125 CCCTCGATCCTGTTGGGGCTTAGACATGGA
130 CCCTCGAT-CTGTTGGGGCTTAGACATGGA
* * *
866155 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAGCTGGCTGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCGGAGAGG
* * * * * ** * * *
866220 CAGAATGCGAAAGCCGGGGATCAGCTCGGTCCCCC-CT-CTGTGCTACCGATCCTGCTACCGCAA
66 CAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGC-GTGCTGTCGATCCCGCTGCCACAA
866283 CCCTCGAT
130 CCCTCGAT
866291 TCGGTCCGAT
Statistics
Matches: 488, Mismatches: 107, Indels: 33
0.78 0.17 0.05
Matches are distributed among these distances:
157 8 0.02
158 268 0.55
159 207 0.42
160 5 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCGGAGAGG
CAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAAC
CCTCGATCTGTTGGGGCTTAGACATGGA
Found at i:866011 original size:501 final size:499
Alignment explanation
Indices: 864292--866013 Score: 1816
Period size: 501 Copynumber: 3.4 Consensus size: 499
864282 CTGCTACCAT
* *
864292 AACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
1 AACCCTCGATCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * *
864356 ACGAGCGTGCTGGCGCTCAGCCCACCGGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGGTCC
65 ACGGGCGTGC-GGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC
* *
864421 CCCCTGTGTGCTGTCGATCCTACTGCTGGTCCTACTACCACAACCCTCGATCCGG-CTTGATCTT
129 CCCCTGCGTGCTGTCGAT-C--CTGCT-G--------CCGCAACCCTCGATCCGGTC-TGATCTT
* * * * *
864485 AGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAACTCCGTATGCTTAAGCCAACCCACG
181 AGACTGGGAATGAACTCTGTATGCCTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACG
* ** * * *
864550 AAACGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGTAAG-TCAGGGATCAACCCGA
246 AAACGAACATGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCATAAGCTGA-GGATCGACCCGA
** * * ** * * *
864614 T-ACCCCTGTATGCTGTTGATCCTGCTGTCATAACCCTCGGTTTGGTCCGGTCTTAGACTTGGAA
310 TCACCCCTGCGTGCTGTCGATCCTGCTGCCATAACCCTCGGTCCGATCCGATCTTAGACTGGGAA
* * * * * * * * * * *
864678 TGAAGTCCATATGCCAAAGTCAACCCACAAAATGAGCATACGGGCACTTAGTC-GATCGGAGAGT
375 TGAACTCCGTATG-CAAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAG-CCGAAGAGG
* * * * * ** * * *
864742 CATAATGCGCAAGCTGGGGATCGACCCGGTTCCCCTCTGCATGCTACCGGTTCCACTACCAC
438 CATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
* *
864804 AACACTC-AGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
1 AACCCTCGA-TCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * * * * *
864868 ACGGGCATGCGGGTGCTCAACCGACTGAAGAGGCAGAAAGCGCAAGCCGGGGATCGGCCCGGTCT
65 ACGGGCGTGC-GGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC
* * * * * * *
864933 CCCCTACGTGCTATCGATCCTGCTACCGTAACCCTCGATCTGGTCTGATTTTAGACTGGAAATGA
129 CCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGA
* * * *
864998 ACT-TCGTATGCTTAGACTGGGGATGAACTCCGTATCCCTAAGTTAACCCACGAAACGAACATGC
194 ACTCT-GTATGCCTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGC
* * * * * * *
865062 GGGCGCTTAGTCGGTCAGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCACCCCTACGTG
258 GGGCGCTCAGTCGATCGGAGAGGCAGAATGCATAAGCTGAGGATCGACCCGATCACCCCTGCGTG
* ** * *
865127 CTGTCGAT-CTTCTTGCTGTAACCCTCAGTCC-AGTCCGATCTTGGACTGGGAATGAACTCCGTA
323 CTGTCGATCCTGC-TGCCATAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
865190 TGCATAAGTCAGCCCACGAAATGAGCGTGCGGGCGCTGAGCCGATCGGAA-AGGCATAATGCACA
386 TGCA-AAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCC-AGCCGAAGAGGCATAATGCACA
* *
865254 AGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTTGGTCCCGCTGCCAC
449 AGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
* * *
865305 AACCCTCGATCCAACTGGGGCTTAGAGATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAA
1 AACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * ** * * * *
865370 CGGGCGTGCGGGCGCTCACCCGGCCAGAGACACAGAATGTGTAAGCCGGGGATCGACTCGATCCC
66 CGGGCGTGC-GGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC
* * * * * * *
865435 CACTGCGTGCTGCCGATCCTACTGTCGCAACCCT-TAGTCCGGTCCGATCCTAGACTGGGAATGA
130 CCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGA
* *
865499 ACTCTGTATGCCTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCG
194 ACTCTGTATGCCTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCG
* ** * * *
865564 GGCACTCAGTCGCCCGGAGAGGTAGAATGCATAAGCTGAGGATCGACCCGGTCCCCCCCTGCGTG
259 GGCGCTCAGTCGATCGGAGAGGCAGAATGCATAAGCTGAGGATCGACCCGAT-CACCCCTGCGTG
* * **
865629 CTGTCGATCCTGCTGCCACAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTATGTATG
323 CTGTCGATCCTGCTGCCATAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
865694 CAAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCAGCCAAAGAGGCATAATGCACAAGCC
388 CAAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGCCGAAGAGGCATAATGCACAAGCC
**
865759 GGGGATCGGCCCAATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
453 GGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
** * *
865806 AACCCTCGATCTTGTTGGGGCTTAAACATGGAATGTAA-TCCCTATGCCTAAGCCAACCCACGAA
1 AACCCTCGATCCAGCTGGGGCTTAGACATGGAATG-AACTCCCTATGCCTAAGCCAACCCACGAA
* * * * * * *
865870 A-GGCGCGTGCGGACTCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCTCGGTC
65 ACGG-GCGTGCGG-CGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC
* * *
865934 CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATTTGATCTTAGACTGAGAATG
128 CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATG
865999 AACT-TCGTATGCCTA
193 AACTCT-GTATGCCTA
866014 AGTCAACCCA
Statistics
Matches: 999, Mismatches: 188, Indels: 57
0.80 0.15 0.05
Matches are distributed among these distances:
499 1 0.00
500 142 0.14
501 652 0.65
502 69 0.07
503 4 0.00
509 5 0.01
511 1 0.00
512 124 0.12
513 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (499 bp):
AACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGGCGTGCGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCC
CCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAAC
TCTGTATGCCTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCGGG
CGCTCAGTCGATCGGAGAGGCAGAATGCATAAGCTGAGGATCGACCCGATCACCCCTGCGTGCTG
TCGATCCTGCTGCCATAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCAA
AGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGCCGAAGAGGCATAATGCACAAGCCGGG
GATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
Found at i:866106 original size:317 final size:315
Alignment explanation
Indices: 865521--866327 Score: 1068
Period size: 317 Copynumber: 2.5 Consensus size: 315
865511 TAGACTAGGG
* * * * *
865521 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCACTCAG-TCGCCCGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCTCTCAGCT-GGCCGGAGAG
* * * *
865585 GTAGAATGC-ATAAGCTGAGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
64 GCAGAATGCGA-AAGCTGAGGATCGGCTCGGT-CCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
* * *
865649 ACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTATGTATG-CAAAGTCAACCCATGAAAC
127 ACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACT-TGTATGCCAAAGTCAACCCACGAAAC
* *
865713 GAGCGTGCGGGTGCTGAGCCAGCCAAAGAGGCATAATGCACAAGCCGGGGATCGGCCCAATCCCC
191 GAGCGTGCGGGTGCTAAGCCAGCCAAAGAGGCATAATGCACAAGCCAGGGATCGGCCCAATCCCC
* *
865778 CTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCTTGTTGGGGCTTAAACATGGA
256 CTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCTGTTGGGGCTTAAACATGGA
* * *
865838 ATGTAA-TCCCTATGCCTAAGCCAACCCACGAAAGGCGCGTGCGGACTCTCAGCTGGCCGGAGAG
1 ATG-AACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGG-CTCTCAGCTGGCCGGAGAG
*
865902 GCAGAATGCGCAAGCTGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAAC
64 GCAGAATGCGAAAGCTGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAAC
** * *
865967 CCTCGATCCGATTTGATCTTAGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
129 CCTCGATCCGATCCGATCTTAGACTGGGAATGAACTT-GTATGCCAAAGTCAACCCACGAAACGA
* * * ** * *
866032 GTGTTCGGGTGCTAAGCC-GATCGTAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCC
193 GCGTGCGGGTGCTAAGCCAG-CCAAAGAGGCATAATGCACAAGCCAGGGATCGGCCCAATCCCCC
*
866096 TCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCTGTTGGGGCTTAGACATGGA
257 TCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCTGTTGGGGCTTAAACATGGA
* * *
866155 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAGCTGGCTGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCT-CTCAGCTGGCCGGAGAGG
* * * ** *
866220 CAGAATGCGAAAGCCGGGGATCAGCTCGGTCCCCCCT-CTGTGCTACCGATCCTGCTACCGCAAC
65 CAGAATGCGAAAGCTGAGGATCGGCTCGGTCCCCCCTGC-GTGCTGTCGATCCTGCTGCCGCAAC
* * *
866284 CCTCGATTCGGTCCGATCTTAGACTGGGGATGAACTTTGTATGC
129 CCTCGATCCGATCCGATCTTAGACTGGGAATGAAC-TTGTATGC
866328 TTAGATTGGG
Statistics
Matches: 428, Mismatches: 51, Indels: 22
0.85 0.10 0.04
Matches are distributed among these distances:
315 1 0.00
316 76 0.18
317 346 0.81
318 5 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (315 bp):
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCTCTCAGCTGGCCGGAGAGGC
AGAATGCGAAAGCTGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCC
TCGATCCGATCCGATCTTAGACTGGGAATGAACTTGTATGCCAAAGTCAACCCACGAAACGAGCG
TGCGGGTGCTAAGCCAGCCAAAGAGGCATAATGCACAAGCCAGGGATCGGCCCAATCCCCCTCTG
CGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCTGTTGGGGCTTAAACATGGA
Found at i:866337 original size:26 final size:26
Alignment explanation
Indices: 866301--866353 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
866291 TCGGTCCGAT
*
866301 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
* *
866327 CTTAGATTGGGGATGAGCTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
866353 C
1 C
866354 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:867062 original size:26 final size:26
Alignment explanation
Indices: 867024--867076 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
867014 GGCTCAAACT
867024 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
867050 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
867076 C
1 C
867077 CGAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:867683 original size:26 final size:26
Alignment explanation
Indices: 867643--867695 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
867633 TCGGTCCGAT
*
867643 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
* * *
867669 CTTAGATTGGTGATGAGCTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
867695 C
1 C
867696 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.30, T:0.36
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:868653 original size:159 final size:157
Alignment explanation
Indices: 868363--868868 Score: 525
Period size: 159 Copynumber: 3.2 Consensus size: 157
868353 CGTGGCTCAA
* * *
868363 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACAAGCGTGCGGGCGCTC
1 AATCTTAGA-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* * * *
868428 AGCCGGCCGGAA-AGGTAGAATGCACAAGCCAGGGATCGGCCTGGTCCCCTCCTGCGTACTGTCG
65 AGCCGGCC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCT-CTGCGTGCTGTCG
**
868492 ATCCTGCTACCGCAACCCTTAGTCTAGTCC
128 ATCCTGCTACCGCAACCCTCGGTCTAGTCC
* * *
868522 AATCTTAGATGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTA
1 AATCTTAGAT-GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* * * * *
868587 AGCCGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGA
65 AGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGT-CCCCTCTGCGTGCTGTCGA
* * * *
868652 TCCCGCTACCACAACCCTCGGTCT-GACTG
129 TCCTGCTACCGCAACCCTCGGTCTAGTC-C
*** * * * * * * *
868681 GGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCTATGAAATGGGTGTACGGGCACT
1 AATCTTAG--ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT
* * * * * *
868745 CAGCCAGTCGTAGAGGCAGAATACGTAAGCCGGGGATCGGCCTGGTCCCCACTGCGTGCTGTCGA
64 CAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGA
** * *
868810 TCCTGCTGTCGTAACCCTCGGT-TCAGTCT
129 TCCTGCTACCGCAACCCTCGGTCT-AGTCC
868839 AATCTTAGATTGGGAATGAACTCCGTATGC
1 AATCTTAGA-TGGGAATGAACTCCGTATGC
868869 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 62 0.22
159 209 0.74
160 5 0.02
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
AATCTTAGATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGATC
CTGCTACCGCAACCCTCGGTCTAGTCC
Found at i:868878 original size:26 final size:26
Alignment explanation
Indices: 868842--868894 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
868832 TCAGTCTAAT
* *
868842 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
868868 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
868894 C
1 C
868895 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:869880 original size:159 final size:159
Alignment explanation
Indices: 869590--869882 Score: 333
Period size: 159 Copynumber: 1.8 Consensus size: 159
869580 GCGTAGACAT
* * ** *
869590 GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAGCCAATTGGAG
1 GGAATGAACTCCGTATGCATAAGCTAACCCACGAAACGAACGTGCGGGCACTCAGCCAACCGAAG
* ** * * ** *
869655 AGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCGTTCCTGCGTTCTGTCGATCCTGCTATCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCCTGCGTGCTGCCGATCCCACTACCAC
869720 AACCCTCGACCCGATCTGGTCTTATACTG
131 AACCCTCGACCCGATCTGGTCTTATACTG
* * * * *
869749 GGAATTAACTCCGTATGCATAAG-TCAACCCAC-AAAGTGAACGTGCGGGCATTGAGCCTACCGA
1 GGAATGAACTCCGTATGCATAAGCT-AACCCACGAAA-CGAACGTGCGGGCACTCAGCCAACCGA
* * *
869812 AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-CTCTGCGTGCTGCC-AGTCCCACTG
64 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTC-CTGCGTGCTGCCGA-TCCCACTA
869875 CCACAACC
127 CCACAACC
869883 TTTGGTCTGG
Statistics
Matches: 109, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
158 6 0.06
159 103 0.94
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCTAACCCACGAAACGAACGTGCGGGCACTCAGCCAACCGAAG
AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCCTGCGTGCTGCCGATCCCACTACCAC
AACCCTCGACCCGATCTGGTCTTATACTG
Found at i:870266 original size:26 final size:26
Alignment explanation
Indices: 870228--870280 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
870218 CCGGTCTGAT
*
870228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
870254 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
870280 C
1 C
870281 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:870464 original size:26 final size:26
Alignment explanation
Indices: 870412--870464 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
870402 TCGGTCCAAT
* **
870412 CTTAGCCTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCAAATG
*
870438 CTTAGACTGGGGATGAACTCCAAATG
1 CTTAGACTGGGAATGAACTCCAAATG
870464 C
1 C
870465 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCAAATG
Found at i:871186 original size:26 final size:26
Alignment explanation
Indices: 871157--871209 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
871147 GGCTCAAAAT
871157 CTTAGAC-TGGGAACGAACTCCGCATG
1 CTTAGACAT-GGAACGAACTCCGCATG
* *
871183 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAACGAACTCCGCATG
871209 C
1 C
871210 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCGCATG
Found at i:871564 original size:159 final size:159
Alignment explanation
Indices: 871182--871614 Score: 460
Period size: 159 Copynumber: 2.7 Consensus size: 159
871172 AACTCCGCAT
*
871182 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
871247 TCGGCCGGAGAGGCAGAATGCCCAAGCCGGGGATCGACCCAGTCCCCCCTTACGTGCTATCGATC
66 TCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTTACATGCTACCGACC
* * * *
871312 TTGCTATCACAACCTTCAGTCCGGTCTAA
131 CTACTACCACAACCGTCAGTCCGGTCTAA
* * * * * *
871341 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCGTGCAGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
871405 GTCGGCTGAAGAGGTATAATGCGCAAGCCGAGGATC-AGCTCGGT-CCACCTCTGCATGCTGCCG
65 GTCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCAGTCCCCCCT-TACATGCTACCG
* * * **
871468 GCCCTACTGCCACAACCGTCGGTCCGG-CTGGG
128 ACCCTACTACCACAACCGTCAGTCCGGTCT-AA
* * * * *
871500 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
871565 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAGTCCCCCCT
66 TCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCT
871615 GTGTGCTGCT
Statistics
Matches: 216, Mismatches: 51, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
158 9 0.04
159 200 0.93
160 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
TCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTTACATGCTACCGACC
CTACTACCACAACCGTCAGTCCGGTCTAA
Found at i:872052 original size:26 final size:26
Alignment explanation
Indices: 872014--872066 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
872004 CTGGTCTGAT
872014 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
872040 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
872066 C
1 C
872067 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:872130 original size:355 final size:354
Alignment explanation
Indices: 871474--872167 Score: 907
Period size: 355 Copynumber: 2.0 Consensus size: 354
871464 GCCGGCCCTA
* **
871474 CTGCCACAACCGTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCATCCATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** *
871539 CACGAAATGGGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACC
66 CACGAAAAGGGCATGCGGGCGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACC
* **
871604 CAGTCCCCCCTGTGTGCTGCTGATCCTGCTGTCGCAACCCTCGATCTGGTCCGATCTTAGACTAG
131 CAGTCCCCCCTGCGTGCAACTGATCCTGCTGTCGCAACCCTCGATCTGGTCCGATCTTAGACTAG
* ** * *
871669 GAATGAACTCCGTATGCTTAGACTGGGGATAAACTTTGTATGCCTAAGTCAACCCATGAAACGAT
196 GAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
*** * * * * *
871734 CATGCGGTTGCTCAGCCGATCAGAGAGGCTTAATCCGTAAGCCGGGGATCAACCC-AGTCTCTCT
261 CATGCGGGCACTCAGCCGATCAGAGAGGCTGAATACGTAAGCCGGGGACCAACCCGA-TCCCACT
871798 CTGCGTGCTGTCGATCCCACTGTCGGTCCTG
325 -TGCGTGCTGTCGATCCCACTGTCGGTCCTG
*
871829 CTGCCACAACCATCCATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCATCCATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
871894 CACGAAACAAGTG-A-GCGGGTGCTTAGCCAACCAGAGAGGCAGAATGCGCAAGTCGGGGATCG-
66 CACG-AA-AAGGGCATGCGGGCGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGA
* * * * *
871956 GCCTGATCCCCCCTGCGTGCAATTGATCCTGCTGTCGTAACCCTC-AGTCTGGTCTGATCTTAGA
129 CCCAG-TCCCCCCTGCGTGCAACTGATCCTGCTGTCGCAACCCTCGA-TCTGGTCCGATCTTAGA
* *
872020 CTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
192 CTAGGAATGAACTCCGTATGCTTAGAC-TGGGAATAAACTCCGTATGCCTAAGCCAACCCATGAA
* * * *
872084 ACGAGCGTGCGGGCACTCAGCTGATCGGAGAGG-TAGAATACGTAAGCCGGGGACCGACCCGATC
256 ACGAGCATGCGGGCACTCAGCCGATCAGAGAGGCT-GAATACGTAAGCCGGGGACCAACCCGATC
872148 CCACTTGCGTGCTGTCGATC
320 CCACTTGCGTGCTGTCGATC
872168 TAGCTGCCGC
Statistics
Matches: 292, Mismatches: 40, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
354 20 0.07
355 264 0.90
356 5 0.02
357 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (354 bp):
CTGCCACAACCATCCATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAAAGGGCATGCGGGCGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACC
CAGTCCCCCCTGCGTGCAACTGATCCTGCTGTCGCAACCCTCGATCTGGTCCGATCTTAGACTAG
GAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
CATGCGGGCACTCAGCCGATCAGAGAGGCTGAATACGTAAGCCGGGGACCAACCCGATCCCACTT
GCGTGCTGTCGATCCCACTGTCGGTCCTG
Found at i:872184 original size:184 final size:184
Alignment explanation
Indices: 871855--872224 Score: 472
Period size: 184 Copynumber: 2.0 Consensus size: 184
871845 TCCGGCTGGG
* ** *
871855 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGAGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGAGCGGGCACTCAG
* * * * * * *
871920 CCAACCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCTGCGTGCAATTGATCC
66 CCAACCAGAGAGGCAGAATACGCAAGCCGGGGACCGACCCGATCCCACCTGCGTGCAATCGATCC
* * * *
871985 TGCTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
872039 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGAGCGGGCACTCAG
** * * * * * **
872104 CTGATCGGAGAGGTAGAATACGTAAGCCGGGGACCGACCCGATCCCACTTGCGTGCTGTCGAT-C
66 CCAACCAGAGAGGCAGAATACGCAAGCCGGGGACCGACCCGATCCCACCTGCGTGCAATCGATCC
*
872168 TAGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
131 T-GCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
872223 GC
1 GC
872225 CTAAGTCAAC
Statistics
Matches: 157, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
183 2 0.01
184 155 0.99
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGAGCGGGCACTCAG
CCAACCAGAGAGGCAGAATACGCAAGCCGGGGACCGACCCGATCCCACCTGCGTGCAATCGATCC
TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:872386 original size:159 final size:156
Alignment explanation
Indices: 872040--872449 Score: 434
Period size: 159 Copynumber: 2.6 Consensus size: 156
872030 ACTCCGTATG
*
872040 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCAGC
* * * *
872105 TGATCGGAGAGGTAGAATACGTAAGCCGGGGACCGACCCGATCCCACTTGCGTGCTGTCGATCTA
66 TGACCAGAGAGGCAGAATACG-AAGCCGGGGACCGACCCGATCCCACTTGCGTGCTGCCGATCTA
*
872170 GCTGCCGCAACCCTCGGTCCGGTCCGA
130 GCTGCCACAACCCTCGGTCCGGTCCGA
* * * ** *
872197 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGAGTGTGGGCGTTGA
1 -CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCA
* * * *
872261 G-TCGACCAGAGAGGCATAATGTAC-AAGTCGGGGATCGGCCCGATCCC-CTTCTGCGTGCTGCC
64 GCT-GACCAGAGAGGCAGAA--TACGAAGCCGGGGACCGACCCGATCCCAC-T-TGCGTGCTGCC
* **
872323 GATCTCGCTGCCACAACCCTCGGTCCGGCTGGGGA
124 GATCTAGCTGCCACAACCCTCGGTCCGG-T-CCGA
* * * * *
872358 -TTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCAGC
* ** *
872422 CGACTGGAGAGGCAGAATGCGCAAGCCG
66 TGACCAGAGAGGCAGAATACG-AAGCCG
872450 AGGATTGACT
Statistics
Matches: 206, Mismatches: 34, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
157 5 0.02
158 88 0.43
159 106 0.51
160 5 0.02
161 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCAGC
TGACCAGAGAGGCAGAATACGAAGCCGGGGACCGACCCGATCCCACTTGCGTGCTGCCGATCTAG
CTGCCACAACCCTCGGTCCGGTCCGA
Found at i:872556 original size:26 final size:26
Alignment explanation
Indices: 872515--872567 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
872505 CTGGTCGGAT
*
872515 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* *
872541 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
872567 C
1 C
872568 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:873510 original size:26 final size:26
Alignment explanation
Indices: 873481--873533 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
873471 CTAGTTCGAT
* *
873481 CTTATACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
873507 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
873533 C
1 C
873534 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:873887 original size:26 final size:26
Alignment explanation
Indices: 873849--873901 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
873839 CTGGTCTGAT
873849 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
873875 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
873901 C
1 C
873902 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:874439 original size:158 final size:158
Alignment explanation
Indices: 873875--874449 Score: 550
Period size: 158 Copynumber: 3.6 Consensus size: 158
873865 ACTCCATATG
* *
873875 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * *
873940 CGGCTAGAGAGGTAGAATGCGCAAGTCGGGGATCGG-CTCGATCCCCCCTGCGTGCTATCGATCC
66 CGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCT-GATCCCCCCTGCGTGCTATCGATCC
* *
874004 TACTG-TCGCAACCCTCCGTTTC-GTCCGAT
130 TACTGCT-GCAACCCT-CGATCCGGTCCGAT
*** * * *
874033 CTTAGAC-TGGGAATGAACTTTATATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * * * * * * * * *
874097 CAGGTCGGAGAGGCATAATGTGTAGGCCAGGGATCGACCCGATCCCCCTCTGCATGCTACCGGTT
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGATCCCCC-CTGCGTGCTATC-GAT
** ** **
874162 CC-ACTGCCACAACCCTCGATCCGGTTGGGG
128 CCTACTGCTGCAACCCTCGATCCGGTCCGAT
* * * *
874192 CTTAGACATGGAATGGACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* ** * * * *
874257 CTGCTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTATCGATCCT
66 CGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGATCCCCCCTGCGTGCTATCGATCCT
* *
874322 GCTGCTGCAACCCTCGGTCCGGTCCGAT
131 ACTGCTGCAACCCTCGATCCGGTCCGAT
* ** * * * *
874350 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGTGTTCAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * *
874414 CCGACCAGAGAGGCAGGATGCGCAAGCTAGGGATCG
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCG
874450 AACGAGTGGT
Statistics
Matches: 323, Mismatches: 85, Indels: 18
0.76 0.20 0.04
Matches are distributed among these distances:
157 6 0.02
158 199 0.62
159 113 0.35
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
CGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGATCCCCCCTGCGTGCTATCGATCCT
ACTGCTGCAACCCTCGATCCGGTCCGAT
Found at i:874449 original size:317 final size:317
Alignment explanation
Indices: 873874--874450 Score: 782
Period size: 317 Copynumber: 1.8 Consensus size: 317
873864 AACTCCATAT
* * *
873874 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* *
873939 CCGGCTAGAGAGGTAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCC
66 CCGGCTAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTATCGATCC
* * * **
874004 TACTGTCGCAACCCTCCGTTTCGTCCGATCTTAGACTGGGAATGAACTTTATATGCCTAAGTCAA
131 TACTGTCGCAACCCTCCGGTCCGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
* * * ** * * * * *
874069 CCCACGAAATGAGCGTACAGGCGCTGAGCAGGTCGGAGAGGCATAATGTGTAGGCCAGGGATCGA
196 CCCACAAAATGAGCGTACAGGCGCTCAACAGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGA
874134 CCCGATCCCCCTCTGCATGCTACCGGTTCCACTGCCACAACCCTCGATCCGGTTGGG
261 CCCGATCCCCCTCTGCATGCTACCGGTTCCACTGCCACAACCCTCGATCCGGTTGGG
* * *
874191 GCTTAGACATGGAATGGACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
874256 CCTGCTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGC-CTGGTCCCCCCTACGTGCTATCGATC
66 CCGGCTAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTC-GATCCCCCCTACGTGCTATCGATC
* *
874320 CTGCTG-CTGCAACCCT-CGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
130 CTACTGTC-GCAACCCTCCGGTCC-GTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGT
* * * * * * * *
874383 CAACCCATAAAATGAGCGTGCGGGTGTTCAACCGACCAGAGAGGCAGGATGCGCAAGCTAGGGAT
193 CAACCCACAAAATGAGCGTACAGGCGCTCAACAGACCAGAGAGGCAGAATGCGCAAGCCAGGGAT
874448 CGA
258 CGA
874451 ACGAGTGGTA
Statistics
Matches: 221, Mismatches: 36, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
316 6 0.03
317 215 0.97
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCTAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTATCGATCC
TACTGTCGCAACCCTCCGGTCCGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
CCCACAAAATGAGCGTACAGGCGCTCAACAGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGA
CCCGATCCCCCTCTGCATGCTACCGGTTCCACTGCCACAACCCTCGATCCGGTTGGG
Found at i:875077 original size:26 final size:26
Alignment explanation
Indices: 875039--875090 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
875029 GGCTCAAAAT
875039 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
875065 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
875091 TATAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:875356 original size:26 final size:26
Alignment explanation
Indices: 875327--875379 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
875317 CCGGTCTGAT
*
875327 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
875353 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
875379 C
1 C
875380 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:875560 original size:289 final size:288
Alignment explanation
Indices: 875037--875560 Score: 712
Period size: 288 Copynumber: 1.8 Consensus size: 288
875027 GTGGCTCAAA
* * *
875037 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGTATAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCACAAGCCAAC
* * * * * * **
875102 CCACGAAACGAGCGTGCGAGCGCTCAGTCGACTAGAGAGGCAGAATGTGCAAGTTGGGCATCGGC
66 CCACGAAACAAGCATGCGAGCGCTAAGCCGACGAGAGAGGCAGAATGCGCAAGCCGGGCATCGGC
* * *
875167 CTGGTCCCCCCTACATGCTGTCAATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTG
131 CTGATCCCCCCTACATGCTGTCAATCCTGCTGCCACAACCCTCGATCTGGTCTAATCTTAGACTG
*
875232 GCAATGAACTCCGTATGCATAAGTCAACCTATGAAACGAGTGTGCTACAGATCCTGTTGCTGGTC
196 GCAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTGCTACAGATCCTGTTGCTGGTC
875297 CTGCTGCCTTAACCCTCAATCCGGTCTG
261 CTGCTGCCTTAACCCTCAATCCGGTCTG
* *
875325 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCACAAGCCAAC
* * * *
875390 CCATGAAACAAGCATGCGGGCGCTAAGCCGACCGA-AGAGGTAGAATGCGTAAGCCGAGG-ATCG
66 CCACGAAACAAGCATGCGAGCGCTAAGCCGA-CGAGAGAGGCAGAATGCGCAAGCCG-GGCATCG
* ** * * * *
875453 ATCC-GATCCCCCGCTATGTGTTGTCAATCCTGGTGCCACAACCCTCGGTTTGGTCTAATCTTAG
129 -GCCTGATCCCCC-CTACATGCTGTCAATCCTGCTGCCACAACCCTCGATCTGGTCTAATCTTAG
* * *
875517 ACTGGGAATGAACTTCGTATGCATAAGTCAACCCATTAAACGAG
192 ACTGGCAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAG
875561 CGTACGGCTA
Statistics
Matches: 201, Mismatches: 31, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
288 112 0.56
289 89 0.44
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23
Consensus pattern (288 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCACAAGCCAAC
CCACGAAACAAGCATGCGAGCGCTAAGCCGACGAGAGAGGCAGAATGCGCAAGCCGGGCATCGGC
CTGATCCCCCCTACATGCTGTCAATCCTGCTGCCACAACCCTCGATCTGGTCTAATCTTAGACTG
GCAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTGCTACAGATCCTGTTGCTGGTC
CTGCTGCCTTAACCCTCAATCCGGTCTG
Found at i:876307 original size:158 final size:157
Alignment explanation
Indices: 876033--876317 Score: 347
Period size: 158 Copynumber: 1.8 Consensus size: 157
876023 CTCGGTCCAG
** * * *
876033 CTGGGGCTTAGACATGGAATGAACTCTGAATACTTAAGCCAACCCACGAAATGAGTGTGCAGGCG
1 CTGGGGCTTAGACATGGAATGAACTCCCAATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCG
** * ** *
876098 TTCAGCCTGCCGGAGAGGCAGAATAAGGAAGCCTGGGATCGGTCTGGCCCCCTCTACGTGCTGCC
66 CCCAGCCGGCCGGAGAGGCAGAATAAGGAAGCCTGGGATCGACCCGGCCCCCT-TACGTGCTGCC
876163 GATCTTGTTGCCACAACCCTTAGTCTGA
130 GATCTTGTTGCCACAACCCTTAGTCTGA
* * * *
876191 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCG
1 CTGGGGCTTAGACATGGAATGAACTCCCAATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCG
* * ** * * *
876256 CCCAGCCGGTCTGAGAGGCAGAATGCGTAAGCC-GGGATCGACCCGATCCCCCTTGCGTGCTG
66 CCCAGCCGGCCGGAGAGGCAGAATAAGGAAGCCTGGGATCGACCCG-GCCCCCTTACGTGCTG
876318 TTGATCCTGC
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
157 17 0.16
158 87 0.84
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
CTGGGGCTTAGACATGGAATGAACTCCCAATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCG
CCCAGCCGGCCGGAGAGGCAGAATAAGGAAGCCTGGGATCGACCCGGCCCCCTTACGTGCTGCCG
ATCTTGTTGCCACAACCCTTAGTCTGA
Found at i:876383 original size:26 final size:26
Alignment explanation
Indices: 876354--876404 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
876344 CTGATCCAAT
*
876354 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
876380 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
876405 GCCTAGGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:877458 original size:158 final size:158
Alignment explanation
Indices: 877113--877460 Score: 378
Period size: 159 Copynumber: 2.2 Consensus size: 158
877103 GCTTCGACTA
* *
877113 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGCTGAGCCCACCGAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGCTCAACCCACCGAAG
** * * * *
877178 AGGCATTATGCGCAAGCCAGGGATCGGCCCGGCCCCCATCTGCATGCTGCTGATACCGCTACCAT
66 AGGCAGAATGCGCAAGCCAGGGATCGGCCCGGCCCCCA-CTACATGCTGCCGATACCACTACCAC
*** * *
877243 AACCCTCGGTCTGGCTGGGGCTTAGACAT
130 AACCCTCGGTCCAACTCGAGCTTAGACAT
* * * ** * *** *
877272 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTGCGGGCGGTCAACCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGCTCAACCCACCGAAG
* * * *
877337 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTGCCGAT-CCTACTACCG
66 AGGCAGAATGCGCAAGCCAGGGATCGGCCCG-GCCCCCACTACATGCTGCCGATACC-ACTACCA
* *
877400 CAACCCTCGGTCCAATTCGATCTTAGAC-T
129 CAACCCTCGGTCCAACTCGAGCTTAGACAT
877429 GGAAATGAACTCCGTATGCCTAAGTCAACCCA
1 GG-AATGAACTCCGTATGCCTAAGTCAACCCA
877461 TGTAACGAGC
Statistics
Matches: 155, Mismatches: 31, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
157 5 0.03
158 64 0.41
159 81 0.52
160 5 0.03
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGCTCAACCCACCGAAG
AGGCAGAATGCGCAAGCCAGGGATCGGCCCGGCCCCCACTACATGCTGCCGATACCACTACCACA
ACCCTCGGTCCAACTCGAGCTTAGACAT
Found at i:878069 original size:11 final size:11
Alignment explanation
Indices: 878029--878061 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
878019 TTAGGCTCTT
878029 CGGCGATGCTC
1 CGGCGATGCTC
878040 CGGCGATGCTC
1 CGGCGATGCTC
878051 CGGCGATGCTC
1 CGGCGATGCTC
878062 TAGCGATGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.09, C:0.36, G:0.36, T:0.18
Consensus pattern (11 bp):
CGGCGATGCTC
Found at i:879242 original size:159 final size:158
Alignment explanation
Indices: 878858--879320 Score: 417
Period size: 159 Copynumber: 2.9 Consensus size: 158
878848 AACTCCGTAT
* ** * * *
878858 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTGACCGATGCAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
878923 TCGACCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAATCC
66 CCGACCGAAAAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGCCAATCC
* ***
878988 TGCTATTGCAACCCTCAGACTGGTCCAA
131 CGCTACCACAACCCTCAGACTGGTCCAA
* * * * * * * ** * *
879016 ACATAAAC-TGGGAATAAACTTCATGTGCCTAAGTCAACCCACGAAACGAGCGTATGGGCCCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
879080 GCCGACCGAAAAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGCCAGT
65 GCCGACCGAAAAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCC-CTACGTGCTGCCAAT
* * * * *
879145 CCCGCTGCCACAACCCTCGGTCTGG-CTAGG
129 CCCGCTACCACAACCCTCAGACTGGTCCA-A
* * *
879175 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * ** *
879240 CCGGCCAAAAAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCCCCCCTGCGTGCTATCGATCC
66 CCGACCGAAAAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGCCAATCC
* *
879305 TGCTACCATAACCCTC
131 CGCTACCACAACCCTC
879321 GGTCTGATTT
Statistics
Matches: 233, Mismatches: 68, Indels: 8
0.75 0.22 0.03
Matches are distributed among these distances:
157 1 0.00
158 113 0.48
159 118 0.51
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAAAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGCCAATCC
CGCTACCACAACCCTCAGACTGGTCCAA
Found at i:891275 original size:11 final size:11
Alignment explanation
Indices: 891259--891291 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
891249 AGGTTAGGCT
891259 CTCCGGTGATG
1 CTCCGGTGATG
891270 CTCCGGTGATG
1 CTCCGGTGATG
*
891281 CTCCAGTGATG
1 CTCCGGTGATG
891292 GTGCCCTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.12, C:0.27, G:0.33, T:0.27
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:891679 original size:158 final size:157
Alignment explanation
Indices: 891387--891729 Score: 381
Period size: 158 Copynumber: 2.2 Consensus size: 157
891377 ACTCTGTATG
* * *
891387 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCATAAAAGGAGCATGCGGGCGCTCATC
1 CTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCATAAAAGGAGCATGCGGGCGCTCAGC
* * * *
891452 CGATCGGAGAGGTAGAATGTGCAAGTCAGGGATCGACCCGATCCCTCCTACGTGCTGTCGATCCT
65 CGATCGGAGAAGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCTCCTACGTGCTATCGATCCT
* *
891517 ACTGCCGTAACCCTCGGTCCGATCCGAT
130 ACTGCCGCAACCCTCAGTCCGATCCGAT
* * * *
891545 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGG-GCGTGCGGGTGCTCAG
1 CTTAGACT-GGAATGAACTCCGTATGCATAAGCCAACCCAT-AAAAGGAGCATGCGGGCGCTCAG
* * *
891609 CTGATCGGAGAAGCAGAATGCGCAAG-CTGGGGATCGACCCGGA-CCC-CCATCCGTGCTATCGA
64 CCGATCGGAGAAGCAGAATGCGCAAGTC-AGGGATCGACCC-GATCCCTCC-TACGTGCTATCGA
* * * * *
891671 T-CTCACTGCTGCAGCCCTCAGTTCGGTCTGAT
126 TCCT-ACTGCCGCAACCCTCAGTCCGATCCGAT
*
891703 CTTAGACTAGGAATGAACTCCATATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
891730 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
157 6 0.04
158 143 0.92
159 7 0.04
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCATAAAAGGAGCATGCGGGCGCTCAGCC
GATCGGAGAAGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCTCCTACGTGCTATCGATCCTA
CTGCCGCAACCCTCAGTCCGATCCGAT
Found at i:891744 original size:26 final size:26
Alignment explanation
Indices: 891703--891755 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
891693 TCGGTCTGAT
891703 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
891729 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
891755 C
1 C
891756 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:891917 original size:26 final size:26
Alignment explanation
Indices: 891888--891940 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
891878 CCAGTTCGAT
891888 CTTAGAC-TGAGAATGAACTCCATATG
1 CTTAGACATG-GAATGAACTCCATATG
* *
891914 CTTAGGCATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCATATG
891940 C
1 C
891941 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:891942 original size:185 final size:185
Alignment explanation
Indices: 891545--892461 Score: 995
Period size: 185 Copynumber: 5.0 Consensus size: 185
891535 CCGATCCGAT
* * * *
891545 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGGGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * ** * * * * *
891610 TGATCGGAGAAGCAGAATGCGCAAGCTGGGGATCGACCCGGACCCCCAT-CCGTGCTATCGATCT
66 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTGACGTGCTATCGATC-
* * * *
891674 C-ACTGCTGCAGCCCTCAGTTCGGTCTGATCTTAGACT-AGGAATGAACTCCATATG
130 CAACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGA-GAATGAACTCCATATG
* * ** * *
891729 CTTAGACTGGGGATGAACTCCGTATGCCTATGTCAACCCACGAAACAAGCATGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
*
891794 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTGACGTGCTATTGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTGACGTGCTATCGATCC
* *
891859 AACTGCCGCCACCCTCGGTCCAGT-TCGATCTTAGACTGAGAATGAACTCCATATG
131 AACTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGAGAATGAACTCCATATG
* * * * *
891914 CTTAGGCAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* ** * * * * * * **
891978 CCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGACCCCCAT-CCGTGTTGCCGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTGACGTGCTATCGATC
*** * ** * * *
892042 TTGCTGCTGCAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
130 CAACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCATATG
* * * * ** *
892098 CTTAGACTGGGGATGAACTTCTTATGCCTATGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
** * * * *
892163 CGACCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCTCGGTCCCCCCCGACGTGCTATTGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTGACGTGCTATCGATCC
* *
892228 AACTGCCGCAACCCTCGGTCCAGTTTGATCTTAGACTGAGAATGAACTCCATATG
131 AACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCATATG
* * * * * *
892283 CTTAGGCAT-GGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
892347 CCGGTCGGAGAGGCAAAATGCACAAGTCAGGGATCGGCTCGGTCCCCCCATG-CGTGCTATCGAT
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCC-TGACGTGCTATCGAT
* ** * *
892411 ACTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
129 CCAACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTC
892462 TGTATGCCTA
Statistics
Matches: 597, Mismatches: 126, Indels: 19
0.80 0.17 0.03
Matches are distributed among these distances:
183 1 0.00
184 238 0.40
185 354 0.59
186 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTGACGTGCTATCGATCC
AACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCATATG
Found at i:892233 original size:369 final size:369
Alignment explanation
Indices: 891554--892468 Score: 1377
Period size: 369 Copynumber: 2.5 Consensus size: 369
891544 TCTTAGACTG
* * * * *
891554 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGGGCGTGCGGGTGCTCAG-CTGATCGGA
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCCAG-TCGGA
* **
891618 GAAGCAGAATGCGCAAGCTGGGGATCGACCCGGACCCCCATCCGTGCTATCGATCTCACTGCTGC
65 GAGGCAGAATGCGCAAGCTGGGGATCGACCCGGACCCCCATCCGTGCTATCGATCTTGCTGCTGC
* * *
891683 AGCCCTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACT
130 AACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
** *
891748 CCGTATGCCTATGTCAACCCACGAAACAAGCATGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATG
195 CCGTATGCCTATGTCAACCCACGAAACAAGCATGCGGGCGCTCAGTCGACCAGAGAGGCAGAATG
* *
891813 CGCAAGCCAGGGATCGGCTCGGTCCCCCCTGACGTGCTATTGATCCAACTGCCGCCACCCTCGGT
260 CGCAAGCCAGGGATCGGCTCGGTCCCCCCCGACGTGCTATTGATCCAACTGCCGCAACCCTCGGT
891878 CCAGTTCGATCTTAGACTGAGAATGAACTCCATATGCTTAGGCAT
325 CCAGTTCGATCTTAGACTGAGAATGAACTCCATATGCTTAGGCAT
*
891923 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCCAGTCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCCAGTCGGAG
* **
891988 AGGCAGAATGCGCAAGCTGGGGATCGACCCGGACCCCCATCCGTGTTGCCGATCTTGCTGCTGCA
66 AGGCAGAATGCGCAAGCTGGGGATCGACCCGGACCCCCATCCGTGCTATCGATCTTGCTGCTGCA
* *
892053 ACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTT
131 ACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTC
* *
892118 CTTATGCCTATGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGC
196 CGTATGCCTATGTCAACCCACGAAACAAGCATGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGC
*
892183 GTAAGCCAGGGATCGGCTCGGTCCCCCCCGACGTGCTATTGATCCAACTGCCGCAACCCTCGGTC
261 GCAAGCCAGGGATCGGCTCGGTCCCCCCCGACGTGCTATTGATCCAACTGCCGCAACCCTCGGTC
*
892248 CAGTTTGATCTTAGACTGAGAATGAACTCCATATGCTTAGGCAT
326 CAGTTCGATCTTAGACTGAGAATGAACTCCATATGCTTAGGCAT
* * * * * *
892292 GGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAACCGGTCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCCAGTCGGAG
* * * * * * * *
892357 AGGCAAAATGCACAAG-TCAGGGATCGGCTCGGTCCCCCCATGCGTGCTATCGATAC-TGCTGCC
66 AGGCAGAATGCGCAAGCT-GGGGATCGACCCGG-ACCCCCATCCGTGCTATCGAT-CTTGCTGCT
* * * *
892420 ACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
128 GCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
892469 CTAAGTCAAC
Statistics
Matches: 494, Mismatches: 48, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
368 1 0.00
369 424 0.86
370 68 0.14
371 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (369 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCCAGTCGGAG
AGGCAGAATGCGCAAGCTGGGGATCGACCCGGACCCCCATCCGTGCTATCGATCTTGCTGCTGCA
ACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTC
CGTATGCCTATGTCAACCCACGAAACAAGCATGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGC
GCAAGCCAGGGATCGGCTCGGTCCCCCCCGACGTGCTATTGATCCAACTGCCGCAACCCTCGGTC
CAGTTCGATCTTAGACTGAGAATGAACTCCATATGCTTAGGCAT
Found at i:892286 original size:26 final size:26
Alignment explanation
Indices: 892257--892309 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
892247 CCAGTTTGAT
892257 CTTAGAC-TGAGAATGAACTCCATATG
1 CTTAGACATG-GAATGAACTCCATATG
* *
892283 CTTAGGCATGGAATGAACTTCATATG
1 CTTAGACATGGAATGAACTCCATATG
892309 C
1 C
892310 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:892581 original size:159 final size:158
Alignment explanation
Indices: 892283--892640 Score: 370
Period size: 159 Copynumber: 2.3 Consensus size: 158
892273 ACTCCATATG
* * *
892283 CTTAGGCATGGAATGAACT-TCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAA
1 CTTAGACATGGAATGAACTCT-ATATGCCTAAGCCAACCCACAAAATGAGCATGCGAGCGCTCAA
*
892347 CCGGTCGGAGAGGCAAAATGCACAAGTCAGGGATCGGCTCGGTCCCCCCATGCGTGCTATCGATA
65 CCGGTCGGAGAGGCAAAATGCACAAGTCAGGGATCGGCTCGATCCCCCCATGCGTGCTATCGATA
* * *
892412 CTGCTGCCACAACCCTCGGTCCGGTCT-GA
130 CCGCTACCACAACCCTCAGTCCGG-CTGGA
* * * * *
892441 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCATGCGAGTGTTGA
1 -CTTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCCACAAAATGAGCATGCGAGCGCTCA
* * ** * *
892505 ATCGG-CAGGAGAGGCATAATGTGCAAG-CTGGGGATCGG-TCTGATCCCCCTC-TGCGTGCTGT
64 ACCGGTC-GGAGAGGCAAAATGCACAAGTC-AGGGATCGGCTC-GATCCCCC-CATGCGTGCTAT
* * *
892566 CGGTCCCGCTACCACAACCCTCAGTTCGGCTGGGA
125 CGATACCGCTACCACAACCCTCAGTCCGGCT-GGA
* **
892601 CTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCA
892641 TGAAACGGTC
Statistics
Matches: 165, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
158 7 0.04
159 153 0.93
160 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACAAAATGAGCATGCGAGCGCTCAAC
CGGTCGGAGAGGCAAAATGCACAAGTCAGGGATCGGCTCGATCCCCCCATGCGTGCTATCGATAC
CGCTACCACAACCCTCAGTCCGGCTGGA
Found at i:892800 original size:26 final size:26
Alignment explanation
Indices: 892759--892811 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
892749 CTGATCTGAT
*
892759 CTTAGACCAGGAATGAACTTCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
* *
892785 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
892811 C
1 C
892812 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:893525 original size:26 final size:25
Alignment explanation
Indices: 893483--893532 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
893473 GGCTCAAACA
*
893483 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGAAATGAACTCTGTATG
893508 CTTAGACATGAAATGAACTCTGTAT
1 CTTAGAC-TGAAATGAACTCTGTAT
893533 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (25 bp):
CTTAGACTGAAATGAACTCTGTATG
Found at i:893861 original size:26 final size:26
Alignment explanation
Indices: 893825--893877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
893815 CTGGTCCGAT
893825 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
893851 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
893877 C
1 C
893878 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:894588 original size:26 final size:26
Alignment explanation
Indices: 894552--894601 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
894542 CAAAATCTTA
894552 GACTGGGAATGAACTCCGTATGCTCG
1 GACTGGGAATGAACTCCGTATGCTCG
*
894578 GACTTGGAATGAACTCCGTATGCT
1 GACTGGGAATGAACTCCGTATGCT
894602 TCAGCCAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (26 bp):
GACTGGGAATGAACTCCGTATGCTCG
Found at i:894693 original size:95 final size:95
Alignment explanation
Indices: 894537--894708 Score: 281
Period size: 95 Copynumber: 1.8 Consensus size: 95
894527 ATGTGCACCA
* * * *
894537 TGGCTCAAAATCTTAGACTGGGAATGAACTCCGTATGCTCGGACTTGGAATGAACTCCGTATGCT
1 TGGCTCAAAATCTTAGACTGGGAATGAACTCCATATGCTCAGACATGGAATGAACTCCGTATGCC
894602 TCAGCCAACCCACGAAACGAGCGTGCATTG
66 TCAGCCAACCCACGAAACGAGCGTGCATTG
* * *
894632 TGGCTCAAACTCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCC
1 TGGCTCAAAATCTTAGACTGGGAATGAACTCCATATGCTCAGACATGGAATGAACTCCGTATGCC
894697 TCAGCCAACCCA
66 TCAGCCAACCCA
894709 AAAAATGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
95 70 1.00
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (95 bp):
TGGCTCAAAATCTTAGACTGGGAATGAACTCCATATGCTCAGACATGGAATGAACTCCGTATGCC
TCAGCCAACCCACGAAACGAGCGTGCATTG
Found at i:895383 original size:125 final size:125
Alignment explanation
Indices: 895182--895410 Score: 300
Period size: 125 Copynumber: 1.8 Consensus size: 125
895172 TCGGTCTGAT
* * * *
895182 CTTAGACTGGAATAAACTCCGTATGCCAAAGTCAACCCACGAAACGAGTGTCCGAGTGCTGAGCC
1 CTTAGACTGGAATAAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTCCGAGTGCTCAGCC
* *
895247 GACCGGAGAGGCATAATGCGCAAGCCG-AGATCGGCCCACAACCCTCGGTCGGACTGGGG
66 GACCAGAGAGGCAGAATGCGCAAGCCGTAGATCGGCCCACAACCCTCGGTCGGACTGGGG
* * * * *
895306 CTTAGACATGGAATGATAC-CCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGAAT-AAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTCCGAGTGCTCAG
* * *
895370 CTGGCCAGAGAGGCAGAATGCGCAAGCCGTGGATCGGCCCA
64 CCGACCAGAGAGGCAGAATGCGCAAGCCGTAGATCGGCCCA
895411 GTCCCCCCTA
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
124 7 0.08
125 68 0.77
126 13 0.15
ACGTcount: A:0.27, C:0.29, G:0.30, T:0.14
Consensus pattern (125 bp):
CTTAGACTGGAATAAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTCCGAGTGCTCAGCC
GACCAGAGAGGCAGAATGCGCAAGCCGTAGATCGGCCCACAACCCTCGGTCGGACTGGGG
Found at i:895573 original size:158 final size:157
Alignment explanation
Indices: 895306--895880 Score: 460
Period size: 158 Copynumber: 3.6 Consensus size: 157
895296 CGGACTGGGG
* * * * * * *
895306 CTTAGACAT-GGAATGATAC-CCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCA
1 CTTAGAC-TGGGAATGA-ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCGCTCA
* ** * * *
895369 GCTGGCCAGAGAGGCAGAATGCGCAAGCCGTGGATCGGCCCAGTCCCCCCTACGTGCTATCGATC
64 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCT-CGTGCTATCGATC
* *
895434 CTACTGCTGCAACCCTCGGTCCGGTCTGAT
128 CTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * *
895464 CTTAGACTGGGAATGAACTCTGTATGCCTAAATCAACCCACGAAATGAGCATTCGGGGGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCGCTCAGC
* * * * * * * *
895529 AG-GCTGGAGAGGCATAATGTGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTACCGGT-
66 CGATC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CT-CGTGCTATCGATC
* ** **
895592 CTCGCTGCCACAACCCTCGGTTTGG-CTGGGG
128 CT-GCTGCCGCAACCCTCGGTCCGGTCT-GAT
** * ** * * *
895623 CTTAGACAAGGAATGAACTCCCTATGAGTAAGCCAACCCACGAAATGGGCATTTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCGCTCAGC
* * * * * * *
895688 CGATCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGAT-CCCCCTCGCATGCTGTTGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTCG--TGCTATCGATCC
* * *
895752 TGCTACCGCAACCCTCGATCCGGTCTAAT
129 TGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * * * * *
895781 CTTACACTGGGAATGAACTCCGTATACCTAAGTTAACCCACGAAATGAGCGTGCAGACGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCGCTCAGC
* * * *
895846 CGACCAGAGAGGCAGGATGCGCAAGCCGCGGATCG
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
895881 AACGGGTGGT
Statistics
Matches: 319, Mismatches: 87, Indels: 22
0.75 0.20 0.05
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 194 0.61
159 116 0.36
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTCGTGCTATCGATCCTG
CTGCCGCAACCCTCGGTCCGGTCTGAT
Found at i:895660 original size:159 final size:159
Alignment explanation
Indices: 895282--895719 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 159
895272 CGAGATCGGC
*
895282 CCACAACCCTCGG-TCGGACTGGGGCTTAGACATGGAATGATAC-CCCTATGCCTAAGCCAACCC
1 CCACAACCCTCGGTTCGGACTGGGGCTTAGACAAGGAATGA-ACTCCCTATGCCTAAGCCAACCC
* * * * * *
895345 ACGAAACGGGCGTGCGGGTGCTCAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGTGGATCGGCCC
65 ACGAAATGGGCATTCGGGGGCTCAGCAGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
*
895410 AGTCCCCCCTACGTGCTATCGATCCTACTG
130 AGTCCCCCCTACGTGCTACCGATCCTACTG
** * * ** ** ** **
895440 CTGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCTGTATGCCTAAATCAACCCA
1 CCACAACCCTCGGTTCGGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * ** * * * **
895504 CGAAATGAGCATTCGGGGGCTGAGCAGGCTGGAGAGGCATAATGTGCAAGTCGGGGATCGGCCTG
66 CGAAATGGGCATTCGGGGGCTCAGCAGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCA
* * *
895569 GTCCCCCTCTGCGTGCTACCGGT-CTCGCTG
131 GTCCCCC-CTACGTGCTACCGATCCT-ACTG
* **
895599 CCACAACCCTCGGTTTGG-CTGGGGCTTAGACAAGGAATGAACTCCCTATGAGTAAGCCAACCCA
1 CCACAACCCTCGGTTCGGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * ** * * *
895663 CGAAATGGGCATTTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGA
66 CGAAATGGGCATTCGGGGGCTCAGCAGGCCAGAGAGGCAGAATGCGCAAGCCGGGGA
895720 CCGACCCGAT
Statistics
Matches: 217, Mismatches: 58, Indels: 9
0.76 0.20 0.03
Matches are distributed among these distances:
157 2 0.01
158 104 0.48
159 111 0.51
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.18
Consensus pattern (159 bp):
CCACAACCCTCGGTTCGGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCA
CGAAATGGGCATTCGGGGGCTCAGCAGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCA
GTCCCCCCTACGTGCTACCGATCCTACTG
Found at i:895858 original size:317 final size:317
Alignment explanation
Indices: 895282--895859 Score: 709
Period size: 317 Copynumber: 1.8 Consensus size: 317
895272 CGAGATCGGC
* *
895282 CCACAACCCTCGGTCGGACTGGGGCTTAGACATGGAATGATACCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCGGACTGGGGCTTAGACAAGGAATGATACCCCTATGACTAAGCCAACCCAC
* * * * * * *
895347 GAAACGGGCGTGCGGGTGCTCAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGTGGATCGGCCCAG
66 GAAACGGGCATGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGTGGACCGACCCAG
* * * * *
895412 TCCCCCCTACGTGCTATCGATCCTACTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
131 TCCCCCCTACGTGCTATCGATCCTACTACCGCAACCCTCGATCCGGTCTAATCTTACACTGGGAA
* * * * ** * * * **
895477 TGAACTCTGTATGCCTAAATCAACCCACGAAATGAGCATTCGGGGGCTGAGCAGGCTGGAGAGGC
196 TGAACTCCGTATACCTAAATCAACCCACGAAATGAGCATGCAGACGCTCAACAGACCAGAGAGGC
895542 ATAATGTGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTACCGGTCTCGCTG
261 ATAATGTGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTACCGGTCTCGCTG
* *
895599 CCACAACCCTCGGTTTGG-CTGGGGCTTAGACAAGGAATGA-ACTCCCTATGAGTAAGCCAACCC
1 CCACAACCCTCGG-TCGGACTGGGGCTTAGACAAGGAATGATAC-CCCTATGACTAAGCCAACCC
* ** * *
895662 ACGAAATGGGCATTTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAG-GGACCGACC
64 ACGAAACGGGCATGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCC-GTGGACCGACC
* * *
895726 C-GAT-CCCCCT-CGCATGCTGTTGATCCTGCTACCGCAACCCTCGATCCGGTCTAATCTTACAC
128 CAG-TCCCCCCTACG--TGCTATCGATCCTACTACCGCAACCCTCGATCCGGTCTAATCTTACAC
* * * *
895788 TGGGAATGAACTCCGTATACCTAAGTTAACCCACGAAATGAGCGTGCAGACGCTCAACCGACCAG
190 TGGGAATGAACTCCGTATACCTAAATCAACCCACGAAATGAGCATGCAGACGCTCAACAGACCAG
895853 AGAGGCA
255 AGAGGCA
895860 GGATGCGCAA
Statistics
Matches: 216, Mismatches: 39, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
315 2 0.01
316 9 0.04
317 201 0.93
318 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
CCACAACCCTCGGTCGGACTGGGGCTTAGACAAGGAATGATACCCCTATGACTAAGCCAACCCAC
GAAACGGGCATGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGTGGACCGACCCAG
TCCCCCCTACGTGCTATCGATCCTACTACCGCAACCCTCGATCCGGTCTAATCTTACACTGGGAA
TGAACTCCGTATACCTAAATCAACCCACGAAATGAGCATGCAGACGCTCAACAGACCAGAGAGGC
ATAATGTGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTACCGGTCTCGCTG
Found at i:896849 original size:26 final size:26
Alignment explanation
Indices: 896820--896872 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
896810 CCGATTAGAT
896820 CTTAGACTGGGAATGAACTCCGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
* * *
896846 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
896872 C
1 C
896873 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:897067 original size:26 final size:26
Alignment explanation
Indices: 897016--897068 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
897006 CCAGATTGAT
*
897016 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
897042 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
897068 C
1 C
897069 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:897154 original size:196 final size:195
Alignment explanation
Indices: 896800--897171 Score: 518
Period size: 196 Copynumber: 1.9 Consensus size: 195
896790 TTGCTATCGC
* * *
896800 AACCCTCGATCCGATTAGATCTTAGACTGGGAATGAACTCCGGATGCTTAGAGTGGGGATGAACT
1 AACCCTCGATCCGATTAGATCTTAGACTGGGAATGAACTCCAGATGCTTAGAATGGGAATGAACT
* * * *
896865 CCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCGACCAGAGAGGTAGAATG
66 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGAGGTAGAATG
896930 CGCAAGCCAAGGATCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTCTATTGGTCGTACTACTG
131 CGCAAGCCAAGGATCGACCCGATCCCCCCC-GCGTGCTGCCGATCCTCTATTGGTCGTACTACTG
896995 T
195 T
* * * *
896996 AACCCTTGATCCAGATT-GATCTTAGACTGGGAATGAACTTCATATGCTTAGACAT-GGAATTAA
1 AACCCTCGATCC-GATTAGATCTTAGACTGGGAATGAACTCCAGATGCTTAGA-ATGGGAATGAA
* * *
897059 CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTTAGCCGGCC-GAAGAGGTAGA
64 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAG-AGAGGTAGA
* * *
897123 ATGCGCAAG-CAGGGGATCGACCCGGTCCCCCCCGCGTGCTGTCGATCCT
128 ATGCGCAAGCCA-AGGATCGACCCGATCCCCCCCGCGTGCTGCCGATCCT
897172 GCTACCACAA
Statistics
Matches: 155, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
195 18 0.12
196 132 0.85
197 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (195 bp):
AACCCTCGATCCGATTAGATCTTAGACTGGGAATGAACTCCAGATGCTTAGAATGGGAATGAACT
CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGAGGTAGAATG
CGCAAGCCAAGGATCGACCCGATCCCCCCCGCGTGCTGCCGATCCTCTATTGGTCGTACTACTGT
Found at i:897432 original size:159 final size:157
Alignment explanation
Indices: 897041--897469 Score: 418
Period size: 159 Copynumber: 2.7 Consensus size: 157
897031 AACTTCATAT
* * * * *
897041 GCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTTAG
* * * * *
897106 CCGGCCGAAGAGGTAGAATGCGCAAGCAGGGGATCGACCCGGTCCCCCCCGCGTGCTGTCGATCC
66 -CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCCGCGTGCTGTCGATCC
*
897171 TGCTACCACAACCTTCAGTCCAGTCCGA
130 CGCTACCACAACCTTCAGTCCAGTCCGA
* ** ** * * *
897199 TCTTAGAC-TGGGAATGAACTTTGTATGCCTAAATCAACCCACGAAACGAGCATTC-GGTGGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGT-GCTT
* * ** * * *
897262 AGCTGGTCGGAGAGGCATAATATACAAACCGGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGG
64 AGC-GGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCC-CCGCGTGCTGTCGA
* * * * * *
897327 TCCCGCTGCCACAACCCTT-GGT-CTGGCTGGG
127 TCCCGCTACCACAA-CCTTCAGTCCAGTC-CGA
* * *
897358 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTTAG
*
897423 TCGACCGGAGAGGCAGAATGCACAAGCCGGGGATC-AGCCCAGTCCCC
66 -CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGA-CCCAGTCCCC
897470 TTTATGTGCT
Statistics
Matches: 213, Mismatches: 48, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 89 0.42
159 112 0.53
160 9 0.04
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTTAG
CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCCGCGTGCTGTCGATCCC
GCTACCACAACCTTCAGTCCAGTCCGA
Found at i:897568 original size:26 final size:26
Alignment explanation
Indices: 897517--897569 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
897507 CTGGTCCGAT
***
897517 CTTAGACTGGGAATGAACTTGGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
897543 CTTAGACTAGGG-ATGAACTCCCTATG
1 CTTAGACT-GGGAATGAACTCCCTATG
897569 C
1 C
897570 GTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:899557 original size:159 final size:159
Alignment explanation
Indices: 899260--899557 Score: 339
Period size: 159 Copynumber: 1.9 Consensus size: 159
899250 CTTAGACATA
* * ** * **
899260 GAATGAACTGCGTATGCCTAAGCCAACCCACGAAACGAGTGTGAGAGTGCTCAGCCGGCCGGAGA
1 GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGAGAGCACTCAGCCGACCAAAGA
* * * * * ** * **
899325 GGTAGAATGCACAAGTTGGGGACTAGCCTGGTCCCCCATTGTGTGCTGTCGATCTCGCTACCGTA
66 GGCAGAATGCACAAGCTGAGGACGAGCCCGGTCCCCCATTGCATGCTGCCGATCTCGCTACCACA
899390 ACCCTCAGTCCGGTCCAATCTTAGACTGG
131 ACCCTCAGTCCGGTCCAATCTTAGACTGG
* ** * *
899419 GAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTTCGGGCACTGAGCCGACCAAAGA
1 GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGAGAGCACTCAGCCGACCAAAGA
* *
899484 GGCATAATGCACAAGCTGAGGATCGA-CCCGGTCCCCC-TCTGCATGCTGCCGGTCTCGCTACCA
66 GGCAGAATGCACAAGCTGAGGA-CGAGCCCGGTCCCCCAT-TGCATGCTGCCGATCTCGCTACCA
*
899547 CAACCTTCAGT
129 CAACCCTCAGT
899558 TTCACTGGGG
Statistics
Matches: 112, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
158 1 0.01
159 109 0.97
160 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGAGAGCACTCAGCCGACCAAAGA
GGCAGAATGCACAAGCTGAGGACGAGCCCGGTCCCCCATTGCATGCTGCCGATCTCGCTACCACA
ACCCTCAGTCCGGTCCAATCTTAGACTGG
Found at i:899762 original size:26 final size:26
Alignment explanation
Indices: 899726--899778 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
899716 CCGGTCCGAT
*
899726 CTTATACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
899752 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
899778 C
1 C
899779 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:900124 original size:26 final size:26
Alignment explanation
Indices: 900095--900147 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
900085 TCGGTTCGAT
*
900095 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
900121 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
900147 C
1 C
900148 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:900893 original size:26 final size:26
Alignment explanation
Indices: 900841--900893 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
900831 CTGATCTGAT
* *
900841 CTTAGATAGGGAATGAACTCTGCATG
1 CTTAGACAGGGAATGAACTCCGCATG
* *
900867 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGCATG
900893 C
1 C
900894 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGCATG
Found at i:901339 original size:26 final size:26
Alignment explanation
Indices: 901310--901360 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
901300 CCGGTCCAAT
901310 CTTAAACT-GGGAATAAACTCCATATG
1 CTTAAACTAGGG-ATAAACTCCATATG
* *
901336 CTTAGACTAGGGATGAACTCCATAT
1 CTTAAACTAGGGATAAACTCCATAT
901361 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (26 bp):
CTTAAACTAGGGATAAACTCCATATG
Found at i:901715 original size:26 final size:26
Alignment explanation
Indices: 901677--901729 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
901667 CCGATCCGAT
901677 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
901703 CTTAGACAT-GGAATGAATTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
901729 C
1 C
901730 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:901873 original size:26 final size:26
Alignment explanation
Indices: 901844--901896 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
901834 GTTGGCTTAG
901844 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
901870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
901896 G
1 G
901897 AGTTTGAGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:903094 original size:26 final size:26
Alignment explanation
Indices: 903065--903115 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
903055 TTGGCTTAGG
903065 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCAT-TCTAAC
*
903091 CATACGGAGTTCTTTCCCATTCTAA
1 CATACGGAGTTCATTCCCATTCTAA
903116 GATCGAAACG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCATTCTAAC
Found at i:903301 original size:26 final size:26
Alignment explanation
Indices: 903265--903334 Score: 113
Period size: 26 Copynumber: 2.7 Consensus size: 26
903255 GTTGGCTTAG
*
903265 ACATACGGAGTTCATTCCATGTCTAA
1 ACATACAGAGTTCATTCCATGTCTAA
903291 ACATACAGAGTTCATTCCATGTCTAA
1 ACATACAGAGTTCATTCCATGTCTAA
* *
903317 GCATATAGAGTTCATTCC
1 ACATACAGAGTTCATTCC
903335 CAGGCTAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (26 bp):
ACATACAGAGTTCATTCCATGTCTAA
Found at i:904169 original size:158 final size:157
Alignment explanation
Indices: 903684--904185 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 157
903674 CCCAATCTAA
* * * * * *
903684 GCATACAGAGTTCATTCCCA-GTCAAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGAT
* * * * * * * * *
903748 GGCATGCT-GGGGGGATAGGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGGCTGGCTGTGCG
65 AGCACG-TAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGTC-GGCTGAGTG
* * * *
903812 CCCGGACGCCCATTTTATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * ** * * *
903842 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTTGGACTGAGGGTTATGGCAGCAGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCGGACTGAGGGTTGTGGCAGCAGGATCGAT
* * * * *
903906 AGCACGTAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTTCGGTTGGCTCAGTG
65 AGCACGTAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTC-TCCGTCGGCTGAGTG
* * * * * *
903971 CCTGCACCCTCGTTTCGTGGGTTGACGTAT
128 CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * *
904001 GCATATGGAGTTCATTCC-TAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGAT
* * *
904065 AGTACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGTGC
65 AGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGTGC
* *
904130 CCGCACGCTTGTTTTGTAGGTTGGCTTAG
129 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
904159 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
904186 CATACAAATT
Statistics
Matches: 272, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 8 0.03
158 141 0.52
159 119 0.44
160 4 0.01
ACGTcount: A:0.18, C:0.24, G:0.32, T:0.26
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGATA
GCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGTGCCC
GCACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:904906 original size:26 final size:26
Alignment explanation
Indices: 904870--904922 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
904860 GTTGACTTAG
904870 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
904896 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
904922 G
1 G
904923 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:905258 original size:159 final size:159
Alignment explanation
Indices: 904895--905274 Score: 405
Period size: 159 Copynumber: 2.4 Consensus size: 159
904885 CCCCAGTCTA
* * * *
904895 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGCTACGGTAGTAGGATCGGC
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAGGATCGGC
* * * * * * * *
904960 AGCATGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCGGCCGGCTGAGCGC
66 AGCATGCAGGGGGGACCGGGCCGATCACCGGCTTGCGCATTATGCCTTTCCGACCAGCTCAGCGC
* *
905025 CCGCACATCCGTTTCATGGGTTGGCTTAG
131 CCACACATCCGTTTCATGGGTTGACTTAG
* * * ** * * * *
905054 AG-ATAGGGAGTTCATT-ACATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGTAGCGGGA-CT
1 AGCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGA-ACCGAGGGTTGCGGTAGCAGGATC-
*
905115 GGCAGCATGCAGAGGGGGACCGGGCCGATCACCGGCTTGCGCATTATGCCTTTCTGACCAGCTCA
63 GGCAGCATGCAG-GGGGGACCGGGCCGATCACCGGCTTGCGCATTATGCCTTTCCGACCAGCTCA
* *
905180 -CTGCCCATAC-GCTCGTTTCATGGGTTGACTTAG
127 GC-GCCCACACATC-CGTTTCATGGGTTGACTTAG
* *
905213 -GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGGAGCAAGATCG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAGGATCG
905275 ATAGCACACA
Statistics
Matches: 174, Mismatches: 37, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
157 6 0.03
158 51 0.29
159 110 0.63
160 7 0.04
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (159 bp):
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAGGATCGGC
AGCATGCAGGGGGGACCGGGCCGATCACCGGCTTGCGCATTATGCCTTTCCGACCAGCTCAGCGC
CCACACATCCGTTTCATGGGTTGACTTAG
Found at i:905409 original size:26 final size:26
Alignment explanation
Indices: 905372--905424 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
905362 GTTGGGTTAG
*
905372 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
905398 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
905424 G
1 G
905425 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:905761 original size:26 final size:26
Alignment explanation
Indices: 905731--905781 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
905721 TTGGCTTAGA
*
905731 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
905757 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
905782 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:906668 original size:26 final size:26
Alignment explanation
Indices: 906639--906691 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
906629 GTTGGCTTAG
906639 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
906665 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
906691 G
1 G
906692 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:907408 original size:26 final size:26
Alignment explanation
Indices: 907361--907411 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
907351 GTTGACTTAG
*
907361 GCATACCGAGTTCATCTTCAGTCTAA
1 GCATACCGAGTTCATCTCCAGTCTAA
*
907387 GCATACGGAGTTCAT-TCCCAGTCTA
1 GCATACCGAGTTCATCT-CCAGTCTA
907412 GGATCGGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACCGAGTTCATCTCCAGTCTAA
Found at i:907573 original size:26 final size:26
Alignment explanation
Indices: 907542--907597 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
907532 TGGGTTGGCT
907542 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
907568 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
907594 TAAG
1 TAAG
907598 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:908260 original size:159 final size:159
Alignment explanation
Indices: 908010--908442 Score: 370
Period size: 159 Copynumber: 2.7 Consensus size: 159
908000 GATAGTACGT
* * * * * * * * ** *
908010 AGGGGGGACCAGGCCGATCCCCGACTGGCGCATTCTGCCTCTCAGGCCAGCTGAGCGCCCGTACG
1 AGGGGGGACCGGGCCGAACCCCGACTTGCGCATTATGCATCTCCGGTCGGCTGAGCGCCCACACA
* * * ** * * * *
908075 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGA
66 CTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAACGAACCGA
**** * ** *
908139 GGGTTGTGGTAGCGTGATCGGCAG-AATGC
131 GGGTTGCAACAACAAGATCGACAGCAA-GC
* * * * *
908168 AGAGGGGGATCGGGCCGAACCCGGGCTTGCGCATTATGCATCTTCGGTCGGCTTAGCGCCCACAC
1 AG-GGGGGACCGGGCCGAACCCCGACTTGCGCATTATGCATCTCCGGTCGGCTGAGCGCCCACAC
* * * * *
908233 ACTCGTTTCGTGGGTTAACTTATGCATACGAAGTTCGTTCC-TAGTCTAAG-ATCAGAACGAATC
65 ACTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGAACGAACC
*
908296 GAGGGTTGCAACAACAAGATCGATAGCAAGC
129 GAGGGTTGCAACAACAAGATCGACAGCAAGC
** * * * *
908327 AGGGGGGACCGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG
1 AGGGGGGACCGGGCCGAACCCCGACTTGCGCATTATGCATCTCCGGTCGGCTGAGCGCCCACACA
* ** *
908392 CTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCA
66 CTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
908443 TACGGAGTTC
Statistics
Matches: 212, Mismatches: 57, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
158 98 0.46
159 112 0.53
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (159 bp):
AGGGGGGACCGGGCCGAACCCCGACTTGCGCATTATGCATCTCCGGTCGGCTGAGCGCCCACACA
CTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAACGAACCGA
GGGTTGCAACAACAAGATCGACAGCAAGC
Found at i:908399 original size:158 final size:157
Alignment explanation
Indices: 907939--908440 Score: 479
Period size: 158 Copynumber: 3.2 Consensus size: 157
907929 CCCAGTCTAA
* * * * *
907939 GCATACAGAGTTTATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGAACGGATCGAGGGTTGCGGTAGCAAGATCGATA
* * * * * * *
908004 GTACGTAGGGGGGACCAGGCCGATCCCCGACTGGCGCATTCTGCCTCTCAGGCCAGCTGAGCGCC
66 G-AAGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * * *
908069 CGTACGCCCATTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * ** *
908097 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGCGTGATCGG
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGAACGGATCGAGGGTTGCGGTAGCAAGATCGA
* * * * * * * * *
908160 CAGAATGCAGAGGGGGATCGGGCCGAACCCGGGCTTGCGCATTATGCATCTTCGGTCGGCTTAGC
64 TAGAA-GCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * ** *
908225 GCCCACACACTCGTTTCGTGGGTTAACTTAT
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *** *
908256 GCATACGAAGTTCGTTCCTAGTCTAAGATCAGAACGAATCGAGGGTTGCAACAACAAGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGAACGGATCGAGGGTTGCGGTAGCAAGATCGATA
*
908321 GCAAGCAGGGGGGACCGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
66 G-AAGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
*
908386 CGCACGCTTGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
908414 GCATACGGAGTTTATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
908441 CATACGGAGT
Statistics
Matches: 264, Mismatches: 72, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
157 3 0.01
158 146 0.55
159 112 0.42
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGAACGGATCGAGGGTTGCGGTAGCAAGATCGATA
GAAGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:909640 original size:159 final size:155
Alignment explanation
Indices: 909156--909652 Score: 455
Period size: 158 Copynumber: 3.1 Consensus size: 155
909146 AAGCATATAG
* * * *
909156 AGTTCATTCCCAGTCTAAGATCAAATTGGATCGAGGGTTGCGGTAGCAGGATCAGCAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCAGA-TGGATCGAGGGTTGTGGTAGCAGGATGA-CAGCACGCAG
* * * * * * * *
909221 GGGGGATCAGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCAGCTGAGCGCCTGCACACC
64 GGGGGATCAGGTCGATCCCCTACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCT
* **
909286 CATTTCATGGGATGGCTTAGGCATAGGG
129 CATTTCATGGGTTGGCTTAGGCATA-CA
** * * * *
909314 AGTTCATT-CCATGTCTAAGCCCCAGCTAGATCGAGGGTTGTGGCAGTC-GGACCGACAGCACGT
1 AGTTCATTCCCA-GTCTAAG-ATCAGATGGATCGAGGGTTGTGGTAG-CAGGA-TGACAGCACG-
* ** * * * * * * *
909377 AAAAGGGGA-CCGAGCCGAT-CCCTGACTTGCACATTATACC-CTTCGGTCGGCTCATCGCCCGC
61 CAGGGGGGATCAG-GTCGATCCCCT-ACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGC
* * *
909439 ACGCTCGTTTCATGGGTTGACTTAGGGATACGA
124 ACGCTCATTTCATGGGTTGGCTTAGGCATAC-A
* * * *
909472 AGTTCATTCCCAGTCTAAGATCAGATCGGATAGAGGGTTGTGATAGCAGGATTGATAGTACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGAT-GGATCGAGGGTTGTGGTAGCAGGA-TGACAGCACGCA-
*
909537 GGGGGGATCAGGTCGATCCCCTACTTGCGCATTCTACCTCTCCGGTTGGCTGAGCGCCCGCACGC
63 GGGGGGATCAGGTCGATCCCCTACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGC
* *
909602 TTATTTCGTGGGTTGGCTTAGGCATACA
128 TCATTTCATGGGTTGGCTTAGGCATACA
909630 TAGTTCATTCCCAGTCTAAGATC
1 -AGTTCATTCCCAGTCTAAGATC
909653 GGACAGGACT
Statistics
Matches: 262, Mismatches: 61, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
157 9 0.03
158 151 0.58
159 102 0.39
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (155 bp):
AGTTCATTCCCAGTCTAAGATCAGATGGATCGAGGGTTGTGGTAGCAGGATGACAGCACGCAGGG
GGGATCAGGTCGATCCCCTACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCA
TTTCATGGGTTGGCTTAGGCATACA
Found at i:910512 original size:26 final size:26
Alignment explanation
Indices: 910482--910534 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
910472 GTTAGCTTAG
**
910482 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
910508 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
910534 G
1 G
910535 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:916233 original size:159 final size:160
Alignment explanation
Indices: 916057--916418 Score: 403
Period size: 159 Copynumber: 2.3 Consensus size: 160
916047 ACACCTGTTT
* * * *
916057 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCTGACCGA-CGAT-T
1 CGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGCGATAT
* * *
916119 GTGGCAGCAGGACCGGCAACACGTAGAGGGGGACCGGG-TCGATCCCCGACTTTCACATTATGCC
66 G-GGCAGCAAGACCGACAACACGTAG-GGGGGACCGGGCT-GATCCCCGACTTGCACATTATGCC
* * *
916183 TCTCCAGCT-GGCTCAGCGCCCGCACGCTCATTT
128 CCTCC-GCTCGGCTCAGCACCCGCACGCTCATTA
* * * * * *
916216 TGTGAGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAG-ATCAGACCAGACCGAGGGCTAT
1 CGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGCGATAT
* * * * * *
916280 GGGCAGCAAGATCGATAGCACGTAGGGGGGATCGGGCTGATCCCCGGCTTGCACATTCTGCCCCT
66 GGGCAGCAAGACCGACAACACGTAGGGGGGACCGGGCTGATCCCCGACTTGCACATTATGCCCCT
* * *
916345 CCGGTCGGCTGAGCACCCGCACGCTCGTTA
131 CCGCTCGGCTCAGCACCCGCACGCTCATTA
* *
916375 CGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCA
1 CGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
916419 TACGGAGTTC
Statistics
Matches: 167, Mismatches: 30, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
158 5 0.03
159 137 0.82
160 23 0.14
161 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
CGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGCGATAT
GGGCAGCAAGACCGACAACACGTAGGGGGGACCGGGCTGATCCCCGACTTGCACATTATGCCCCT
CCGCTCGGCTCAGCACCCGCACGCTCATTA
Found at i:916428 original size:26 final size:26
Alignment explanation
Indices: 916392--916442 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
916382 TGGCTTAGGT
916392 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
916418 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
916443 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:916809 original size:26 final size:25
Alignment explanation
Indices: 916771--916822 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
916761 GTTGACTTAG
916771 GCATACGAGTTCATCCCCAGTCTAA
1 GCATACGAGTTCATCCCCAGTCTAA
*
916796 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATCCCCAGTCTAA
916822 G
1 G
916823 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGAGTTCATCCCCAGTCTAA
Found at i:917124 original size:159 final size:159
Alignment explanation
Indices: 916851--917300 Score: 460
Period size: 159 Copynumber: 2.8 Consensus size: 159
916841 TTACGGTAGT
* * *
916851 AGGATCGATAGCACGCAG-GGGGGACCAGGCCGATCCCTGGCTTGTGCATTCA-TCCTCTTTGAC
1 AGGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGTGCATT-ATTCCTCTTCGAC
* * * * * * *
916914 CGGTTGGGCACCCACACGCCCGTTTCTTGGGGTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
65 CGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * **** *
916979 AGCCCCAGCCAGACCGAGGGTTGTGGCAGC
130 AGCCCAAACCAGACCGAGGGGTACAACAAC
* * *
917009 AGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCCTGACTTGTGCATTATTCCTCTTCGACC
1 AGGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGTGCATTATTCCTCTTCGACC
* * * * * * * *
917074 AGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCC-TAGTCTC
66 GGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTA
**
917138 AGATCAAACCAGACCGAGGGGTACAACAAC
130 AGCCCAAACCAGACCGAGGGGTACAACAAC
* * * * * * *
917168 AGGATCGACAGCTCGCA-AGGAGGGACCGGGGTGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGA
1 AGGATCGATAGCACGCAGAGG-GGGACCGGGCTGATCCCT-GGCTTGTGCATTATTCCTCTTCGA
* *
917231 CTGGCTGAGCGCCCCACACGCTCGTTTCGCGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
64 CCGGCTGAGCG-CCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
917296 TAAGC
128 TAAGC
917301 ATACGGAGTT
Statistics
Matches: 233, Mismatches: 52, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
158 25 0.11
159 159 0.68
160 48 0.21
161 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
AGGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGTGCATTATTCCTCTTCGACC
GGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCAAACCAGACCGAGGGGTACAACAAC
Found at i:917414 original size:11 final size:11
Alignment explanation
Indices: 917398--917427 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
917388 AGGGCACCAC
917398 CGTCGGAGCAT
1 CGTCGGAGCAT
917409 CGTCGGAGCAT
1 CGTCGGAGCAT
917420 CGTCGGAG
1 CGTCGGAG
917428 ACCCTAACCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.17, C:0.27, G:0.40, T:0.17
Consensus pattern (11 bp):
CGTCGGAGCAT
Found at i:918546 original size:26 final size:26
Alignment explanation
Indices: 918510--918562 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
918500 GTTGGCTTAG
918510 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
918536 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
918562 G
1 G
918563 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:918668 original size:183 final size:183
Alignment explanation
Indices: 918353--918719 Score: 519
Period size: 183 Copynumber: 2.0 Consensus size: 183
918343 GTTGACTTAG
* * * *
918353 GCATACAGAGTTCATTCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGCAGTAGGATCGACAG
1 GCATACAGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACAG
* * *
918418 CACGCAAAGGGGGACTAGGTCATCTCCGGCTTACGCATTCTGCCTCTTTGATCGACTGAGCACCC
66 CACGCAAAGGGGGACTAGGCCATCCCCGGCTTACGCATTCTGCCTCTTCGATCGACTGAGCACCC
*
918483 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
131 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAA
* *
918536 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGTTTGCGACAGTAGGATCGACA
1 GCATACAGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
* * ** *
918601 GCACGC-AGGGGGGA-TCGGGCCATCCCCGGCTTGTGCATTCTGCCT-TTCCGA-CTGACTTAGC
65 GCACGCAAAGGGGGACT-AGGCCATCCCCGGCTTACGCATTCTGCCTCTT-CGATC-GACTGAGC
918662 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
127 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
918719 G
1 G
918720 ATTTTGAGCC
Statistics
Matches: 164, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
182 4 0.02
183 108 0.66
184 52 0.32
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (183 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACAG
CACGCAAAGGGGGACTAGGCCATCCCCGGCTTACGCATTCTGCCTCTTCGATCGACTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:919426 original size:26 final size:26
Alignment explanation
Indices: 919390--919442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
919380 GTTGACTTAG
*
919390 GCATATAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
919416 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
919442 G
1 G
919443 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:919915 original size:158 final size:156
Alignment explanation
Indices: 919424--919916 Score: 490
Period size: 159 Copynumber: 3.1 Consensus size: 156
919414 AAGCATACAA
** * *
919424 AGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAA
1 AGTTCATTCCTAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACATAG
* ** * * * * *
919489 GGGGACCAGGTTGAT-CCTCGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCC
65 GGGGACCGGGCCGATCCCT-GGCTTGTGCATTATGCCTCTTCGACTGGTTGAGCGCCCGCACGCT
* *
919553 CATTTCGTGGGTTGGCTTAGGCATAGGG
129 CGTTTCGTGGGTTGGCTTAGGCATACGG
* ** * ** *
919581 TGTTCATTCC-ATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGTGGGACCGACAGCACAC
1 AGTTCATTCCTA-GTCTAAG-ATCAGACCGGAC-GAGGGTTGCGGCAGCAGGATCGACAG--CAC
* ** * * * * *
919644 AAAGGGGGATTGGGCCGATCCCCGACTTGTGCATTATGCCTATTCGA-TCGGCTCAGCGCCCGCA
61 ATAGGGGGACCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCGACT-GGTTGAGCGCCCGCA
* *
919708 CGCTCGTTTCGTGGGTTGACTTATGCATACGG
125 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * *
919740 AGTTCATTCCCAATCTAAGATTAGACCAGATCGAGGGTTGCGGCAGCAGGATTGACAGCACATAG
1 AGTTCATTCCTAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACATA-
** * *
919805 GGGGGACCGGGCCGATCCCTGGCTTGCACATTTTGCCTCTTCGACTGGTTGAGTGCCCGCACGCT
64 GGGGGACCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCGACTGGTTGAGCGCCCGCACGCT
919870 CGTTTCGTGGGTTGGCTTAGGCATACGG
129 CGTTTCGTGGGTTGGCTTAGGCATACGG
* *
919898 AGTTCATTCTTTGTCTAAG
1 AGTTCATTCCTAGTCTAAG
919917 CATATGGAGT
Statistics
Matches: 264, Mismatches: 60, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 46 0.17
158 98 0.37
159 114 0.43
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
AGTTCATTCCTAGTCTAAGATCAGACCGGACGAGGGTTGCGGCAGCAGGATCGACAGCACATAGG
GGGACCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCGACTGGTTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGG
Found at i:919939 original size:26 final size:26
Alignment explanation
Indices: 919890--919942 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
919880 GTTGGCTTAG
***
919890 GCATACGGAGTTCATTCTTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
919916 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
919942 G
1 G
919943 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:921765 original size:159 final size:158
Alignment explanation
Indices: 921572--921959 Score: 411
Period size: 158 Copynumber: 2.4 Consensus size: 158
921562 CTACCTATCT
* * * * *
921572 GGCCGGTTGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
1 GGCCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
** * ** ** *
921637 CTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGTGGGACCAGCACCACGC-AGAGGAGGACCGGGC
66 CTAAGCCCCAACCGAACCAAGGGTTGCAGCAGCAGGACCAACACCACGCAAGA-G-GGACCGGGC
* * *
921701 CGATCCCCGATTTACACATTATGCCTTTTC
129 CGATCCCCGACTTACACATTATGCCTCTCC
* * * *
921731 GGCCGGCTTAGAGCCCGCACGCTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAG
1 GGCCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-G
* ** * * * * * *
921795 TCTCAGATCGAACCGAACCAAGGGTTGCAGTAGCAGGATCAACAGCACGCAAGAGGGATCGGGTC
65 TCTAAGCCCCAACCGAACCAAGGGTTGCAGCAGCAGGACCAACACCACGCAAGAGGGACCGGGCC
* * *
921860 GATCCCCGACTTGCGCATTCTGCCTCTCC
130 GATCCCCGACTTACACATTATGCCTCTCC
* * * *
921889 GGTCGGCTGAGCGCCCGCACACTCGTTTCATGGGTAGGCTTAGGCATACGGAGTTCATTCCATGT
1 GGCCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
921954 CTAAGC
66 CTAAGC
921960 ATACGGAGTT
Statistics
Matches: 184, Mismatches: 42, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
158 91 0.49
159 90 0.49
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GGCCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCCAACCGAACCAAGGGTTGCAGCAGCAGGACCAACACCACGCAAGAGGGACCGGGCCG
ATCCCCGACTTACACATTATGCCTCTCC
Found at i:921931 original size:158 final size:158
Alignment explanation
Indices: 921508--921958 Score: 465
Period size: 159 Copynumber: 2.8 Consensus size: 158
921498 AGGGTTACGA
* * * * * * * *
921508 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTACCTATCTG
1 CAGCAGGATCAACAGCACGCAAGAGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTATCCG
* * * *
921573 GCCGGTTGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* ** * **
921638 TAAGCCCCAGTCGAACCGAGGGTTGTGG
131 TAAGACCCAACCGAACCAAGGGTTGCAG
** * * * * * * * * * *
921666 CAGTGGGACCAGCACCACGC-AGAGGAGGACCGGGCCGATCCCCGATTTACACATTATGCCTTTT
1 CAGCAGGATCAACAGCACGCAAGA-G-GGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTATC
* * * * *
921730 CGGCCGGCTTAGAGCCCGCACGCTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TA
64 CGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-
* * *
921794 GTCTCAGATCGAACCGAACCAAGGGTTGCAG
128 GTCTAAGACCCAACCGAACCAAGGGTTGCAG
* * *
921825 TAGCAGGATCAACAGCACGCAAGAGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCG
1 CAGCAGGATCAACAGCACGCAAGAGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTATCCG
* * *
921890 GTCGGCTGAGCGCCCGCACACTCGTTTCATGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTC
66 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
921955 TAAG
131 TAAG
921959 CATACGGAGT
Statistics
Matches: 227, Mismatches: 61, Indels: 10
0.76 0.20 0.03
Matches are distributed among these distances:
157 1 0.00
158 106 0.47
159 117 0.52
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
CAGCAGGATCAACAGCACGCAAGAGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTATCCG
GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGACCCAACCGAACCAAGGGTTGCAG
Found at i:921962 original size:26 final size:26
Alignment explanation
Indices: 921932--921984 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
921922 GTAGGCTTAG
921932 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
921958 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
921984 G
1 G
921985 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.