Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 8 of 93
Found at i:922684 original size:26 final size:26
Alignment explanation
Indices: 922654--922706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
922644 GTTGACTTAG
922654 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* *
922680 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
922706 G
1 G
922707 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:923070 original size:163 final size:158
Alignment explanation
Indices: 922680--923186 Score: 384
Period size: 163 Copynumber: 3.2 Consensus size: 158
922670 CCCAGTCTAA
* * * * *
922680 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGATCGCCA
1 GCATGCGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * *
922745 GCACGTAG-GAGGGACTGGGTCGATCCCCGGCTTGAGCATTCTACCTCTCCAGCCGGCTGAGCGG
65 GCACGTAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATACCTCTCCAGCCGGCTCAGCGC
* *
922809 CCGCACGCCTGTGTCGTGGGTTGGCTTAG
130 CCGCACGCCTGTGTCATGGGTTGACTTAG
* ** * * * *
922838 GCATAG-GGAGTTTATTCCATGTCTAAGCCCCA-ACCAGACTGAGGGTTGTGGCAACGGGA-CCA
1 GCAT-GCGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGA
* * * *
922900 GCAGCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTAT-GCTCTCCCGTCGGCCTTT
63 -CAGCACGTAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATACCTCTCCAGCCGG-C--T
* * *
922964 CAGTGCCCGCACAGCTTCGTTTCATGGGTTGAC-TAG
124 CAGCGCCCGCAC-GCCT-GTGTCATGGGTTGACTTAG
*
923000 GCATGCGGAGTTCAATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
1 GCATGCGGAGTTC-ATTCC-AGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *****
923065 AGCACGTA-AGGGGGGTCC-AGGCCGATCCCCT-GCTTGCGCTTTCTGCCTCTCCGGCCAAAAGA
64 AGCACGTAGA-GGGGGACCGA-GCCGAT-CCCTGGCTTGCGCATTATACCTCTCCAGCCGGCTCA
* * * * *
923127 GCGCACGCACGCTTATTTCATGGGTTGGCTTAG
126 GCGCCCGCACGCCTGTGTCATGGGTTGACTTAG
*
923160 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATGCGGAGTTCATTCCA-GTCTAAG
923187 CATAAGGGGT
Statistics
Matches: 273, Mismatches: 55, Indels: 41
0.74 0.15 0.11
Matches are distributed among these distances:
157 4 0.01
158 61 0.22
159 55 0.20
160 19 0.07
161 20 0.07
162 20 0.07
163 79 0.29
164 15 0.05
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATGCGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAG
CACGTAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATACCTCTCCAGCCGGCTCAGCGCC
CGCACGCCTGTGTCATGGGTTGACTTAG
Found at i:923190 original size:26 final size:26
Alignment explanation
Indices: 923160--923212 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
923150 GTTGGCTTAG
*
923160 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATAAGGAGTTCATTTCCA-GTCTAA
*
923186 GCATAAGGGGTTCATTTCCAGTCTAA
1 GCATAAGGAGTTCATTTCCAGTCTAA
923212 G
1 G
923213 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTTCCAGTCTAA
Found at i:923852 original size:159 final size:159
Alignment explanation
Indices: 923675--924053 Score: 413
Period size: 159 Copynumber: 2.4 Consensus size: 159
923665 CGGTCGGCAG
* * * * * *
923675 AGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTACATTCCATGTTTAAGCCCC
1 AGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCC
* * * * *
923740 AACCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACACAGAG-GGGGACCGAGCT-GATCCTC
66 AACCAGACCAAGGGTTGCGGTAGCAGGACCGACAGCACACAG-GTGGGGACCG-GCTCGATCCCC
* * *
923803 GGCTTGTGCATTATGCCTCTTCGGCCGACTC
129 AGCTTGCGCATTATGCCTCTCCGGCCGACTC
* * * *
923834 AGCGCCCGCACGCTCGTTTAATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATC
1 AGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACC
** * * * * *
923898 GGATCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACCCAGGTGGGGATCGGGTCGATCCCCA
65 CAACCAGACCAAGGGTTGCGGTAGCAGGACCGACAGCACACAGGTGGGGACCGGCTCGATCCCCA
* * * *
923963 GCTTGCGCATTCTGCCTCTCCGGTCGGCTG
130 GCTTGCGCATTATGCCTCTCCGGCCGACTC
* * * *
923993 AGTGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG
1 AGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
924054 CATACGGAGT
Statistics
Matches: 180, Mismatches: 36, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
158 6 0.03
159 171 0.95
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
AGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCC
AACCAGACCAAGGGTTGCGGTAGCAGGACCGACAGCACACAGGTGGGGACCGGCTCGATCCCCAG
CTTGCGCATTATGCCTCTCCGGCCGACTC
Found at i:925104 original size:159 final size:157
Alignment explanation
Indices: 924814--925277 Score: 484
Period size: 159 Copynumber: 2.9 Consensus size: 157
924804 CAGACTAGAC
* * * * * * * *
924814 CGAGGGTTGCAGCAGTAGGATCGACAGCACGTAAGGGGGATCGGGTCGATCCCTGACTTGCGCAT
1 CGAGGGTTACGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * * * **
924879 TCTGCCTCTCTGCCGGCTGAGA-TCCCATACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCCTCTCCGCCGGCTGA-ACGCCCGTACACTCATTTCATGGGTTGGCTTAGGCATACAGAGT
***
924943 TCATTCCATGTCTAAGCCCTGGCCGGAT
130 TCATTCCATGTCTAAGCCCAAACCGGAT
** * *
924971 CGAGGGTTGGGGCAGCGGGA-CTGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGC
1 CGAGGGTTACGGCAGCAGGATC-GACAGCACGCA-AGGGGGACCGGGCCGATCCCCGGCTTGCGC
* * * * * *
925035 ATTATGCCTCTCCGACCGGCTCAACGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCCTACAGA
64 ATTCTGCCTCTCCG-CCGGCTGAACGCCCGTACACTCATTTCATGGGTTGGCTTAGGCATACAGA
**
925100 GTTCATTCCCA-GTCTAAGATCAAACCGGAT
128 GTTCATT-CCATGTCTAAGCCCAAACCGGAT
* * * *
925130 CGAGGGTTACGGCAGCAGGATCGACAGCACGCAAGAGGCGACCGGGCAGGTCCCCGGCTTGCACA
1 CGAGGGTTACGGCAGCAGGATCGACAGCACGCAAG-GGGGACCGGGCCGATCCCCGGCTTGCGCA
* * * * * *
925195 TTCTACCTCTCCGGCCAGCTGAACGCCTGCACATTCATTTAATGGGTTGGCTTAGGCATACAGAG
65 TTCTGCCTCTCC-GCCGGCTGAACGCCCGTACACTCATTTCATGGGTTGGCTTAGGCATACAGAG
*
925260 TTCATTCCATGTTTAAGC
129 TTCATTCCATGTCTAAGC
925278 ATATGGAGTT
Statistics
Matches: 249, Mismatches: 49, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 25 0.10
158 44 0.18
159 174 0.70
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
CGAGGGTTACGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
TCTGCCTCTCCGCCGGCTGAACGCCCGTACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTT
CATTCCATGTCTAAGCCCAAACCGGAT
Found at i:925745 original size:26 final size:26
Alignment explanation
Indices: 925706--925783 Score: 111
Period size: 26 Copynumber: 3.0 Consensus size: 26
925696 GTTGACTTAG
* *
925706 GCATACGGAGTTCATCCCCCGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
925732 GCGTACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
925758 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
925784 CATTGGACCA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:926060 original size:159 final size:159
Alignment explanation
Indices: 925758--926575 Score: 652
Period size: 158 Copynumber: 5.2 Consensus size: 159
925748 CCCAGTCTAA
* * ** * * * ** * *
925758 GCATACGAAGTTCATTCCCTGTCTAA-CATTGGACCAGACTGAGGGTTGTGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGTAGCAGGACCGAC
* ** * * *
925822 AGCACGTAG-GGGGGATTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
65 AGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* * *
925886 CCTGCACACCCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
925916 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGATCGAGGGTTGTTGCAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCAGGACCGACA
* * * * * * *
925981 ACACGCAGAGGGGGACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCGATTGGCTCAACGC
66 GCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * * *
926046 CTGTACGCTTGTTTCGTGGGTTGACTTAG
131 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * ** * *
926075 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGGCTGGATCGAGTGTTACGGTAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCTA-GCCGGACCGAGGGTTGTGGTAGCAGGACCGA
* * * * * * * ** * ** *
926138 CAGCACGCA-A-AGGGATCAAGTCGATCCCCAGTTTGCGCAGTCTTTCTTTCCGGCCGGCTGAGG
64 CAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * *
926201 GCCCGCACGCTCATTTCATAGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
**
926232 GCATACGGAGTTCATTCCATGTC-AAGCCCTAGCCGGACCGAGGGTTGTGGTAGTGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCAGGACCGACA
* * * * * * * * * * *
926296 GCACGCAGAGGGGGATCGGGTCGATCCCCGACTTACACATTATGCCTCTCC-AGCCTGCTCAGTG
66 GCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCG
* * *
926360 CCCGTACGCTCATTTCGTGGGTTGACTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *
926390 GCATACGGAGTTCATTCCCA-ATCTAAG-ATTAGACCGGACCAAGGGTTGTAGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGTAGCAGGACCGA
* * * *
926453 CAGCACGCAG-GGGGGACC-AGGCCGATCACCGGCTTGTGCATTCTGCCTCTCTGATCGGTTGAG
64 CAGCACGCAGAGGGGGACCGA-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* * *
926516 TGCCCGCACGCACGTTTCATGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
926548 GCAAACAGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
926576 ATATGGAGTT
Statistics
Matches: 511, Mismatches: 133, Indels: 31
0.76 0.20 0.05
Matches are distributed among these distances:
156 40 0.08
157 82 0.16
158 220 0.43
159 166 0.32
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCAGGACCGACA
GCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:926248 original size:157 final size:159
Alignment explanation
Indices: 925905--926462 Score: 405
Period size: 159 Copynumber: 3.5 Consensus size: 159
925895 CCGTTTCGTG
* * ** * * *** *
925905 GGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGTCGGATCGAGGGTTGTTGCA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCTAGCCGGACCGAGGGTTACGGTA
** * * * * * * * * *
925969 GCGGGACCGACAACACGCAGAGGGGGACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCC-G
65 GTAGGACCGACAGCACGCAGAGAGGGATCAAGTCGATCCCCGACTTACACAGTATGCCTCTCCAG
** ** * * ** * *
926033 ATTGGCTCAACGCCTGTACGCTTGTTTCGTG
130 -CCGGCTCAGGGCCCGCACGCTCATTTCATA
* * *
926064 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGGCTGGATCGAGTGTTACGGTA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTA-GCCGGACCGAGGGTTACGGTA
* * * * * ** * *
926128 GTAGGATCGACAGCACGCA-A-AGGGATCAAGTCGATCCCC-AGTTTGCGCAGTCTTTCTTTCCG
65 GTAGGACCGACAGCACGCAGAGAGGGATCAAGTCGATCCCCGA-CTTACACAGTATGCCTCTCCA
*
926190 GCCGGCTGAGGGCCCGCACGCTCATTTCATA
129 GCCGGCTCAGGGCCCGCACGCTCATTTCATA
* ** **
926221 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTC-AAGCCCTAGCCGGACCGAGGGTTGTGGTA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCTAGCCGGACCGAGGGTTACGGTA
* * ** *
926284 GTGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTACACATTATGCCTCTCCAG
65 GTAGGACCGACAGCACGCAGAGAGGGATCAAGTCGATCCCCGACTTACACAGTATGCCTCTCCAG
* * * * *
926349 CCTGCTCAGTGCCCGTACGCTCATTTCGTG
130 CCGGCTCAGGGCCCGCACGCTCATTTCATA
* * ***
926379 GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGAT-TAGACCGGACCAAGGGTTGTAGTA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTAG-CCGGACCGAGGGTTACGGTA
* *
926443 GCAGGATCGACAGCACGCAG
65 GTAGGACCGACAGCACGCAG
926463 GGGGGACCAG
Statistics
Matches: 311, Mismatches: 76, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
156 40 0.13
157 77 0.25
158 87 0.28
159 104 0.33
160 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTAGCCGGACCGAGGGTTACGGTAG
TAGGACCGACAGCACGCAGAGAGGGATCAAGTCGATCCCCGACTTACACAGTATGCCTCTCCAGC
CGGCTCAGGGCCCGCACGCTCATTTCATA
Found at i:926451 original size:315 final size:317
Alignment explanation
Indices: 925853--926575 Score: 840
Period size: 315 Copynumber: 2.3 Consensus size: 317
925843 CGATCCCCGA
* ** * * * * * * *
925853 CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACACCCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGCAGTCTGCCTCTCCGACCGGCTGAGGGCCCGCACGCACATTTCATAGGTTGGCTTAGGC
* * * *
925918 ATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGATCGAGGGTTGTTGCAGCGGGACCGACAAC
66 ATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAAC
* * * * *
925983 ACGCAGAGGGGGACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCGATTGGCTCAACGCCT
131 ACGCAGAGGGGGACCGAGCCGATCCCCGACTTACACATTATGCCTCTCCGACTGGCTCAACGCCC
** * * *
926048 GTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGCTGGA
196 GTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGA
* * * * * * * *
926113 TCGAGTGTTACGGTAGTAGGATCGACAGCACGCA-AAGGGATCAAGTCGATCCCCAG
261 CCAAGGGTTACAGTAGCAGGATCGACAGCACGCAGAAGGGACCAAGCCGATCACCAG
* ** * * *
926169 TTTGCGCAGTCTTTCTTTCCGGCCGGCTGAGGGCCCGCACGCTCATTTCATAGGTTGGCTTAGGC
1 CTTGCGCAGTCTGCCTCTCCGACCGGCTGAGGGCCCGCACGCACATTTCATAGGTTGGCTTAGGC
* * *
926234 ATACGGAGTTCATTCCATGTC-AAGCCCTAGCCGGACCGAGGGTTGTGGTAGTGGGACCGACAGC
66 ATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAAC
* * * * **
926298 ACGCAGAGGGGGATCGGGTCGATCCCCGACTTACACATTATGCCTCTCCAGCCT-GCTCAGTGCC
131 ACGCAGAGGGGGACCGAGCCGATCCCCGACTTACACATTATGCCTCTCC-GACTGGCTCAACGCC
*
926362 CGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCGG
195 CGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGG
** ** * *
926427 ACCAAGGGTTGTAGTAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCACCGG
260 ACCAAGGGTTACAGTAGCAGGATCGACAGCACGCAGAAGGGACCAAGCCGATCACCAG
* * * * * * * *
926485 CTTGTGCATTCTGCCTCTCTGATCGGTTGAGTGCCCGCACGCACGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCAGTCTGCCTCTCCGACCGGCTGAGGGCCCGCACGCACATTTCATAGGTTGGCTTAGGC
* *
926550 AAACAGAGTTCATTCCATGTCTAAGC
66 ATACGGAGTTCATTCCATGTCTAAGC
926576 ATATGGAGTT
Statistics
Matches: 337, Mismatches: 67, Indels: 5
0.82 0.16 0.01
Matches are distributed among these distances:
315 174 0.52
316 159 0.47
317 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (317 bp):
CTTGCGCAGTCTGCCTCTCCGACCGGCTGAGGGCCCGCACGCACATTTCATAGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAAC
ACGCAGAGGGGGACCGAGCCGATCCCCGACTTACACATTATGCCTCTCCGACTGGCTCAACGCCC
GTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGA
CCAAGGGTTACAGTAGCAGGATCGACAGCACGCAGAAGGGACCAAGCCGATCACCAG
Found at i:927070 original size:26 final size:26
Alignment explanation
Indices: 927032--927084 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
927022 GTTAGCTTAG
*
927032 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
927058 GCATACGGTGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
927084 G
1 G
927085 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:928303 original size:26 final size:26
Alignment explanation
Indices: 928264--928319 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
928254 TGGGTTGGCA
928264 TAAGCATACAGAGTTCATTCC-ATGTC
1 TAAGCATACAGAGTTCATTCCTA-GTC
* *
928290 TAAGCTTACGGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATTCCTAGTC
928316 TAAG
1 TAAG
928320 ATTCGAACGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCTAGTC
Found at i:928636 original size:171 final size:170
Alignment explanation
Indices: 928296--928661 Score: 477
Period size: 171 Copynumber: 2.1 Consensus size: 170
928286 TGTCTAAGCT
** *
928296 TACGGAGTTCATTCCTAGTCTAAGATTCGAACGAATCAAGGGTTGTGGCAGCAGGACCAGCAGCA
1 TACGGAGTTCATTCCTAGTCTAAGCCTCGAACGAATCAAGGGTTGTGGCAGCAGGACCAGCAACA
* * *
928361 GGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCTGACTTACGCATTCTGCTTCTCCGGCCGG
66 GGATCGACAGCACGTAGGAGGGATCGGGCCGATCCCTGACTTACGCATTATGCCTCTCCGGCCGG
* * * *
928426 TTGAGCGCTCGTACGCTCGTTTCATGGGTTGGCTTAGGCA
131 CTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* * **
928466 TACGGAGTTCATTCC-ATGTCTAAGCCTC-AACCGGATCGAGGGTTGTGGCAGCAGGACTGGCAA
1 TACGGAGTTCATTCCTA-GTCTAAGCCTCGAA-CGAATCAAGGGTTGTGGCAGCAGGACCAGCAA
** * * *
928529 TGGGATCGATAGCACGTAGAGAGGGATCGGGCTGAT-CCTCGGCTTACGCATTATGCCTCTCCGG
64 CAGGATCGACAGCACGTAG-GAGGGATCGGGCCGATCCCT-GACTTACGCATTATGCCTCTCCGG
*
928593 CCGGCTAAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCA
127 CCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* *
928637 TACAGAGTTCATCCCTAGTCTAAGC
1 TACGGAGTTCATTCCTAGTCTAAGC
928662 ATACGGAGTT
Statistics
Matches: 169, Mismatches: 22, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
169 3 0.02
170 70 0.41
171 95 0.56
172 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (170 bp):
TACGGAGTTCATTCCTAGTCTAAGCCTCGAACGAATCAAGGGTTGTGGCAGCAGGACCAGCAACA
GGATCGACAGCACGTAGGAGGGATCGGGCCGATCCCTGACTTACGCATTATGCCTCTCCGGCCGG
CTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
Found at i:930070 original size:26 final size:26
Alignment explanation
Indices: 930040--930092 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
930030 GTTGGCTTAG
930040 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
930066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
930092 G
1 G
930093 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:930455 original size:170 final size:171
Alignment explanation
Indices: 930225--930548 Score: 429
Period size: 170 Copynumber: 1.9 Consensus size: 171
930215 TCATTTCGTA
*
930225 GGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAGTCGGACAGAAGGTTGTGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAAGGTTGTGGCAG
* * * * * * * **
930290 CAGGATCGACAGCGA-GATCGATAGCACACAGAGGGGGATCGAGCTGATCCTCGACTCACGTGTT
66 CAGAACCGACAGC-ACGATCGACAGCACACAAAGGGGGACCAAGCTGATCCCCGACTCACGCATT
*
930354 ATGCCTCTTCGATCGACTGAGCGCCTGCAAGCCCGTTTTGTG
130 ATGCCTCTCCGATCGACTGAGCGCCTGCAAGCCCGTTTTGTG
* * *
930396 GGTT-GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATC-GAGGGTTGTGGTA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CAGAAGGTTGTGGCA
** * *
930459 GCAGAACCGGTAGCACGATCGACAGCACGCAAAGGGGGACCAAGCTGATCCCCGACTTACGCATT
65 GCAGAACCGACAGCACGATCGACAGCACACAAAGGGGGACCAAGCTGATCCCCGACTCACGCATT
* *
930524 ATGCCTCTCCGGTCGGCTGAGCGCC
130 ATGCCTCTCCGATCGACTGAGCGCC
930549 CGCTCGCTGG
Statistics
Matches: 131, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
169 1 0.01
170 125 0.95
171 5 0.04
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.22
Consensus pattern (171 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAAGGTTGTGGCAG
CAGAACCGACAGCACGATCGACAGCACACAAAGGGGGACCAAGCTGATCCCCGACTCACGCATTA
TGCCTCTCCGATCGACTGAGCGCCTGCAAGCCCGTTTTGTG
Found at i:930607 original size:26 final size:26
Alignment explanation
Indices: 930577--930629 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
930567 ACTGACTTAG
*
930577 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
930603 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
930629 G
1 G
930630 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:930888 original size:159 final size:158
Alignment explanation
Indices: 930600--931106 Score: 475
Period size: 159 Copynumber: 3.2 Consensus size: 158
930590 ATCCCCAGTC
* * * * * * * * * * *
930600 TAAGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACAGAGGGTTGCGGTAGAAAGATC
1 TAAGCATACGGAGTTCATT-CCTGTCTAAGCACCAGATCGGACCGAGGGTTACGGCAGCAGGAAC
* * * *
930664 GACAGCACGC-GGTGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGATCGGCTAA
65 GACAACACGCAGG-GGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTAA
* *
930728 ACGCCCGCACGCCCATTTTGTGGGTTGGCT
129 ACGCCCGCACGCTCATTTCGTGGGTTGGCT
* * **
930758 TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGAAC
1 TAAGCATACGGAGTTCATTCC-TGTCTAAGCACCAGATCGGACCGAGGGTTACGGCAGCAGGAAC
* * * *
930822 GGCAACACGCAGAGGGGGATCAGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTAA
65 GACAACACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTAA
* ** * *
930887 ACGCCTGCACGCTTGTTTCGTGAGTTGACT
129 ACGCCCGCACGCTCATTTCGTGGGTTGGCT
* * * * *
930917 TATGCATACGGAGTTCATTCCTAGTCTAAG-ATCAGATCGGACTGAGGGTTACGGTAGCAGGATC
1 TAAGCATACGGAGTTCATTCCT-GTCTAAGCACCAGATCGGACCGAGGGTTACGGCAGCAGGAAC
* * * * * *
930981 GATAGCACGCAGGGGCGGATCGGGCCGATCCCTGGCTTGCGCATTTTGCCTC-TCTGGCCTGCTA
65 GACAACACGCAGGGG-GGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-GGTCGGCTA
* * * *
931045 AGCGCTCGTACGCTCATTTCATGGGTTGGCT
128 AACGCCCGCACGCTCATTTCGTGGGTTGGCT
* * *
931076 TAGGCATACAGAGTTCATTCCCTATCTAAGC
1 TAAGCATACGGAGTTCATT-CCTGTCTAAGC
931107 GTACGGAGTT
Statistics
Matches: 280, Mismatches: 59, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 61 0.22
159 213 0.76
160 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
TAAGCATACGGAGTTCATTCCTGTCTAAGCACCAGATCGGACCGAGGGTTACGGCAGCAGGAACG
ACAACACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTAAAC
GCCCGCACGCTCATTTCGTGGGTTGGCT
Found at i:931838 original size:26 final size:26
Alignment explanation
Indices: 931801--931853 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
931791 GTTGACTTAG
931801 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* *
931827 GCATACTA-AGTTCATTCCTAGTCTAA
1 GCATA-TAGAGTTCATCCCCAGTCTAA
931853 G
1 G
931854 ATTGGGCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:932758 original size:26 final size:26
Alignment explanation
Indices: 932729--932779 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
932719 GTTGACTTAG
*
932729 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
932755 GCATATAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
932780 TGATCGGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:933082 original size:159 final size:158
Alignment explanation
Indices: 932794--933083 Score: 350
Period size: 159 Copynumber: 1.8 Consensus size: 158
932784 CGGACTAGAC
* *
932794 TGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCAT
1 TGAGGGTTGTGGAAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCACAT
* * ** ** * * * *
932859 TCTGCCTCTCCCACCGGTTGAGCACCAGCATGCCCATTCCATGGGTTGGCATAGGTATAGGGAGT
66 TATGCCTCTCCCACCGCTCAAGCACCAGCACACCCATTCCATGGGTTGACATAGGCACACGGAGT
932924 TCATTCCACGTCTAAGCCCTAGCTGGAT
131 TCATTCCACGTCTAAGCCCTAGCTGGAT
* * *
932952 TGAGGGTTGTGGAAGCGGGATCGACAGCACGTAGAGGGGGACCGAGCCGATCCCTGGCTTGCACA
1 TGAGGGTTGTGGAAGCAGGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCACA
* * * * * *
933017 TTATGCCTCTCCGATCGACTCAATGC-CC-GCACACTCGTTTCATGGGTTGACTTAGGCACACGG
65 TTATGCCTCTCCCACCG-CTCAA-GCACCAGCACACCCATTCCATGGGTTGACATAGGCACACGG
933080 AGTT
128 AGTT
933084 ACAGCAGCAT
Statistics
Matches: 108, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
158 31 0.29
159 71 0.66
160 4 0.04
161 2 0.02
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
TGAGGGTTGTGGAAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCACAT
TATGCCTCTCCCACCGCTCAAGCACCAGCACACCCATTCCATGGGTTGACATAGGCACACGGAGT
TCATTCCACGTCTAAGCCCTAGCTGGAT
Found at i:934094 original size:26 final size:26
Alignment explanation
Indices: 934063--934115 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
934053 GTTCGCTTAG
934063 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
934089 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
934115 G
1 G
934116 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:935493 original size:26 final size:26
Alignment explanation
Indices: 935463--935515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
935453 GTTGACTTAG
*
935463 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
935489 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
935515 G
1 G
935516 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:935943 original size:158 final size:158
Alignment explanation
Indices: 935781--936146 Score: 436
Period size: 158 Copynumber: 2.3 Consensus size: 158
935771 GCACCTGAAA
935781 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACCG
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCG
* * *
935845 AGGGTTGCGGTAGCAGGATCGATAGCACATAGGAGGG-ATCGAGCCAATCCCCAACTTACGTATT
65 AGGGTTGCGGCAGCAGGATCGACAGCACACAGG-GGGTATCGAGCCAATCCCCAACTTACGTATT
*
935909 -TCGTCTCTCCGGTC-AGCTGAGCGCCCGCAC
129 CT-GCCTCTCCGGTCGA-CTGAGCGCCCGCAC
* * * *
935939 GCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGA
* * * * * * * **
936004 GGGTTGCTGCAGCAGGATTGACAGCACGCAGGGGGTTTCGGGCTAATCCCCGACTTGTGTATTCT
66 GGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGTATCGAGCCAATCCCCAACTTACGTATTCT
* * *
936069 GCCTCTCTGGTCGACTGTGCGCCCGTAC
131 GCCTCTCCGGTCGACTGAGCGCCCGCAC
* * * *
936097 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATT-CCATGTCTAAG
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
936147 CATACGGAGT
Statistics
Matches: 177, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
157 6 0.03
158 168 0.95
159 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.27
Consensus pattern (158 bp):
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGA
GGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGTATCGAGCCAATCCCCAACTTACGTATTCT
GCCTCTCCGGTCGACTGAGCGCCCGCAC
Found at i:936170 original size:26 final size:26
Alignment explanation
Indices: 936120--936172 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
936110 GTTGGCTTAG
* *
936120 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
936146 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
936172 G
1 G
936173 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:936324 original size:183 final size:184
Alignment explanation
Indices: 935962--936330 Score: 472
Period size: 183 Copynumber: 2.0 Consensus size: 184
935952 GTTGACTTAG
* * ** * * *
935962 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCTGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *** * **
936027 GCACGCAGGGGGTTTCGGGCTAATCCCCGACTTGTGTATTCTGCCTCTCTGGTCGACTGTGCGCC
66 GCACACAGGGGGTATCGGGCTAATCCCCGACTTGCACATTCTGCCTCTCTGATCGACTGAACGCC
* *
936092 CGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
131 CATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** *
936146 GCATACGGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTGCGGTTGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * **
936211 GCACACAGGGGG-ATCGGG-TCGATCCCCGGCTTGCACATTCTGCCTTTCTGATCGGTTGAACGC
66 GCACACAGGGGGTATCGGGCT-AATCCCCGACTTGCACATTCTGCCTCTCTGATCGACTGAACGC
* *
936274 CCATACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
936329 GC
1 GC
936331 CCTAGCTAGA
Statistics
Matches: 157, Mismatches: 27, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
182 1 0.01
183 90 0.57
184 66 0.42
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.27
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACACAGGGGGTATCGGGCTAATCCCCGACTTGCACATTCTGCCTCTCTGATCGACTGAACGCC
CATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:936517 original size:26 final size:26
Alignment explanation
Indices: 936487--936539 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
936477 GTTGACTTAG
*
936487 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
936513 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
936539 G
1 G
936540 ATCGGACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:937013 original size:25 final size:26
Alignment explanation
Indices: 936975--937026 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
936965 GTTGGCTTAG
936975 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
937001 GCATATGG-GTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
937026 G
1 G
937027 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:937338 original size:866 final size:856
Alignment explanation
Indices: 936087--937806 Score: 1894
Period size: 866 Copynumber: 2.0 Consensus size: 856
936077 GGTCGACTGT
* *
936087 GCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATAC
1 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
* * *
936152 GGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTGCGGTTGCAGGATCGATAGCACAC
66 GGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTACGGTGGCAGGAACGATAGCACAC
* * * * ** *
936217 AGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTTTCTGATCGGTTGAACGCCCATACGC
131 AGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCTGACCGACTGAACGCCCACACGC
* * * *
936282 TTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCTAGACCGAGG
196 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCTAGACCAAGG
* * * * * * * * **
936347 TTTGTGGCAGTAGGACAGTCAGCTGGATCGGCAGCACGCAGAGTGGGACTGGGCTAATCCTCTGC
261 GTTGTGGCAGCAGGACAGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGAGCTAATCCCCCAC
* * * *
936412 TTACGCATTATGCCTCTCAAATCGGCCTCTCCAGTCGACTGAGCGCCTGCACACTCGTTTCATGG
326 TTACGCAATATGCCTCTCAAAGCAGCCTCTCCACTCGACTGAGCGCCTGCACACTCGTTTCATGG
* * *
936477 GTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGAT
391 GTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAC
* ** * * *
936542 CGGA-CTAAACCGTGGGTTGCGACAACAGGATCGGTAGCATGCAGGAAGGATCAGGCCGAAACCT
456 CAGATC-AAACCGAAGGTTACGACAACAGGATCGGCAGCACGCAGGAAGGATCAGGCCG-AACCT
* * *
936606 -GACTTACGCATTTTGCCTTTTC-GACCGACTGAGCACCCGCACGCCCGTTT-ATGGGTAT-GCT
519 CGACTTACGCATTTTGCCTCTCCAG-CCGACTGAGCACCCGCACGCCAGTTTCATGGGT-TGGCT
* * *
936667 TAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCTGGA-TCGAGGGTTGTGGTAGCGGGACC
582 TAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAACCGGACT-GAGGGTTGTGGCAGCGGGACC
* * * * * * **
936731 GA-CAGCTTGCAGAGGGGGACCGGGCTAATCCTCGGCTTG-GTTATTATGCC-ACTTTGA-TCAG
646 CATC-GCATGCAGAGGGGGACCAGGCCAATCCTCGACTTGCG-CATTATGCCTA-TCCGACT-AG
** * * * *
936792 CTCAATGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGA
707 CTCAATGCCCGCACGCTCATTCCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGA
* * * ** * * *
936857 TTAAACCAGATCGAGGGTTGCGATAGTAGGATCGACAGCAC-GGAGGGGGGGACCAGGCCGATCC
772 TCAAACCAGATAGAGGGTTGCGACAACAAGATCGACAGCACTCGA-GGAGGGACCAGGCCGATCC
936921 CTGGCTTGCACATTCTGCCAA
836 CTGGCTTGCACATTCTGCCAA
* *
936942 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAT
1 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
* * * *
937007 GG-GTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGATAGTAGGACCAGTAACAAGA
66 GGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTACG---GT-GG--CAGGAAC--GA
* * **
937071 TCAGTAGCACGTAGGGGGGACCGGGTTC-ATCCTCGGCTTGTGCA-TCTACCTCTCTGACCGACT
123 T-AGCA-CAC--A-GGGGGACCGGG-TCGATCCCCGGCTTGCACATTCTACCTCTCTGACCGACT
* * *
937134 -AAGGGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCC
182 GAA-CGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-C
* * * * *
937198 CCAATC-GGACCAAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCGACAGCATGCAGAGGGGGA-
245 CCAAGCTAGACCAAGGGTTGTGGCAGCAGGACAGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
* * ** * * *
937261 TCGAGTTGATCCCCCACTTGTGCAATATGCCTCTC-CAGCAAGCCTTTCCGACT-GGCTGAGCGC
310 T-GAGCTAATCCCCCACTTACGCAATATGCCTCTCAAAGC-AGCCTCTCC-ACTCGACTGAGCGC
*
937324 CTGCACACTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACGGAG
372 CTGCACACTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACGGAG
* ** * * ** * *
937389 TTCATTCCCAGTCTAATACCAGATCGGATCGAAGGTTACGGCAGTAGGATCGGCAGTACGCAGGG
437 TTCATTCCCAGTCTAAGACCAGATCAAACCGAAGGTTACGACAACAGGATCGGCAGCACGCAGGA
* * * * * * * ** * * *
937454 GGGATCGGGTCGATCCTCGGCTTGCTCATTTTGCCTCTCCAGTTGGCTGAGCGCCCGTACGCCAG
502 AGGATCAGGCCGAACCTCGACTTACGCATTTTGCCTCTCCAGCCGACTGAGCACCCGCACGCCAG
*
937519 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTT
567 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAACCGGACTGAGGGTT
* * *
937584 GTGGCAGCGGGACCCATCGCATGCAGAGGGGGATCAGGCCGATCCTTGACTTGCGCATTATGCCT
632 GTGGCAGCGGGACCCATCGCATGCAGAGGGGGACCAGGCCAATCCTCGACTTGCGCATTATGCCT
* * * *
937649 ATCCGACTGGCTCAGTGCCCGCATGCTCATTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCC
697 ATCCGACTAGCTCAATGCCCGCACGCTCATTCCATGGGTTGACTTAGGCATACGAAGTTCATTCC
** * * *
937714 CAATCTAAGATCGGATCAGATAGAGGGTTGCGGCAACAAGATCGACAGCACTCGAGGAGGGACCG
762 CAATCTAAGATCAAACCAGATAGAGGGTTGCGACAACAAGATCGACAGCACTCGAGGAGGGACCA
*
937779 GGCCGATCCCTGGCTTGCGCATTCTGCC
827 GGCCGATCCCTGGCTTGCACATTCTGCC
937807 TCTCTGAANN
Statistics
Matches: 707, Mismatches: 128, Indels: 48
0.80 0.14 0.05
Matches are distributed among these distances:
854 37 0.05
855 63 0.09
857 2 0.00
858 1 0.00
860 5 0.01
862 3 0.00
863 3 0.00
864 3 0.00
865 9 0.01
866 310 0.44
867 262 0.37
868 9 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (856 bp):
GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
GGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTACGGTGGCAGGAACGATAGCACAC
AGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCTGACCGACTGAACGCCCACACGC
TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCTAGACCAAGG
GTTGTGGCAGCAGGACAGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGAGCTAATCCCCCAC
TTACGCAATATGCCTCTCAAAGCAGCCTCTCCACTCGACTGAGCGCCTGCACACTCGTTTCATGG
GTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAC
CAGATCAAACCGAAGGTTACGACAACAGGATCGGCAGCACGCAGGAAGGATCAGGCCGAACCTCG
ACTTACGCATTTTGCCTCTCCAGCCGACTGAGCACCCGCACGCCAGTTTCATGGGTTGGCTTAGG
CATAGGGAGTTCATTCCATATCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCGGGACCCATCG
CATGCAGAGGGGGACCAGGCCAATCCTCGACTTGCGCATTATGCCTATCCGACTAGCTCAATGCC
CGCACGCTCATTCCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAG
ATAGAGGGTTGCGACAACAAGATCGACAGCACTCGAGGAGGGACCAGGCCGATCCCTGGCTTGCA
CATTCTGCCAA
Found at i:939633 original size:26 final size:26
Alignment explanation
Indices: 939597--939649 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
939587 GTTGGCTTAG
939597 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
939623 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
939649 G
1 G
939650 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:939842 original size:26 final size:26
Alignment explanation
Indices: 939806--939858 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
939796 GTTGACTTAG
939806 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
939832 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
939858 G
1 G
939859 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:941164 original size:159 final size:158
Alignment explanation
Indices: 940910--941530 Score: 629
Period size: 159 Copynumber: 3.9 Consensus size: 158
940900 GATCGGATCA
* * * **
940910 AGGGTTGCGGCAGTAGGATCGGTAGCATGCAGGGGGGACCAGATCGATCCCCGGCTTGTGCATTC
1 AGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTC
* * * * * *
940975 TACCTCTTCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTAGGTTCGCTTAGGCATAGGGAGTTC
66 TACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
941040 ATTCCATGTCTAAGCCCCAACCAGACCG
131 ATTCCATGTCTAAGCCCCAACCAGACCG
* * * * * * *
941068 AGGGTTGTGGCAGCAGGACCGGCAGCATGCAGAGGGGCACCGGGTCGATCCCTGGCTTACGCATT
1 AGGGTTGCGGCAGCAGGATCGGTAGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTTACGCATT
** * *
941133 CTACCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
65 CTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
** ** ** *
941198 CATTCCCA-GTCTAAGATCGGACTGGACTG
130 CATT-CCATGTCTAAGCCCCAACCAGACCG
* * * * * * *
941227 AGGGTTGCGGTAGCAGGATCGGTGGCACGCAGGGGGTACCAGGACAATCCCCGACTTACGTATTC
1 AGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTC
* * * * * * * **
941292 TGCCTTTTCGACCGGGTGAGCGCCCGCATGCCCGTTTCATGTCTTGGCTTAGGCATA-GGAAGTT
66 TACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTT
* *
941356 CATTCCATGTCTAAGCCCCAACCAGATCA
130 CATTCCATGTCTAAGCCCCAACCAGACCG
* * * * * * *
941385 AGGCTTGTGGCAGC-GAGATTGGTAGCACGCAGAGGGGGATC-GGGCTGATCCTCGGCTTGCGCA
1 AGGGTTGCGGCAGCAG-GATCGGTAGCACGCAG-GGGGGACCAGGTC-GATCCCCGGCTTACGCA
* * * **
941448 TTCTGCCTCTCCGACCGGCTAAGCTCCCGCGTGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
63 TTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
941513 TTCATTCCATGTCTAAGC
128 TTCATTCCATGTCTAAGC
941531 ATACAGAGTT
Statistics
Matches: 372, Mismatches: 83, Indels: 15
0.79 0.18 0.03
Matches are distributed among these distances:
157 6 0.02
158 146 0.39
159 215 0.58
160 5 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
AGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTC
TACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAACCAGACCG
Found at i:941451 original size:317 final size:317
Alignment explanation
Indices: 940876--941529 Score: 802
Period size: 317 Copynumber: 2.1 Consensus size: 317
940866 TAAGCGTACA
* *
940876 GAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGGCAGTAGGATCGGTAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * ** *
940941 GGGGGGACCAGATCGATCCCCGGCTTGTGCATTCTACCTCTTCGGCCGGCTGAGCACCCGCACGC
66 GGGGGGACCAGATCAATCCCCGACTTACGCATTCTACCTCTTCGACCGGCTGAGCACCCGCACGC
* * * * *
941006 TCGTTTCGTAGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGG
131 CCGTTTCATAGCTTCGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGG
* *
941071 GTTGTGGCAGCAGGACCGGCAGCATGCAGAGGGGCACCGGGTCGATCCCTGGCTTACGCATTCTA
196 CTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGCACCGGGTCGATCCCTGGCTTACGCATTCTA
** *
941136 CCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
261 CCTCTCCGACCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* * * *
941193 GAGTTCATTCCCAGTCTAAGATCGGA-CTGGA-CTGAGGGTTGCGGTAGCAGGATCGGTGGCACG
1 GAGTTCATTCCCAGTCTAAGATCAGATC-GGATC-AAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * * *
941256 CAGGGGGTACCAGGA-CAATCCCCGACTTACGTATTCTGCCTTTTCGACCGGGTGAGCGCCCGCA
64 CAGGGGGGACCA-GATCAATCCCCGACTTACGCATTCTACCTCTTCGACCGGCTGAGCACCCGCA
* * *
941320 TGCCCGTTTCAT-GTCTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCAGATC
128 CGCCCGTTTCATAG-CTTCGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCAGACC
** * * * *
941384 AAGGCTTGTGGCAGC-GAGATTGGTAGCACGCAGAGGGGGATCGGG-CTGAT-CCTCGGCTTGCG
192 AAGGCTTGTGGCAGCAG-GACCGGCAGCACGCAGAGGGGCACCGGGTC-GATCCCT-GGCTTACG
* * * ** *
941446 CATTCTGCCTCTCCGACCGGCTAAGCTCCCGCGTGCTCGTTTCGTGGGTTGGCTTAGGCATACG
254 CATTCTACCTCTCCGACCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
941510 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
941530 CATACAGAGT
Statistics
Matches: 287, Mismatches: 42, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
316 11 0.04
317 274 0.95
318 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (317 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
GGGGGGACCAGATCAATCCCCGACTTACGCATTCTACCTCTTCGACCGGCTGAGCACCCGCACGC
CCGTTTCATAGCTTCGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGG
CTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGCACCGGGTCGATCCCTGGCTTACGCATTCTA
CCTCTCCGACCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
Found at i:941539 original size:26 final size:26
Alignment explanation
Indices: 941503--941555 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
941493 GTTGGCTTAG
*
941503 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
941529 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
941555 G
1 G
941556 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:942256 original size:26 final size:26
Alignment explanation
Indices: 942223--942273 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
942213 TGGGTTGACT
*
942223 TAGGCATATGGAGTTCATCCCCAGTC
1 TAGGCATAGGGAGTTCATCCCCAGTC
*
942249 TAGGCATAGGGAGTTCATTCCCAGT
1 TAGGCATAGGGAGTTCATCCCCAGT
942274 TTAAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGGCATAGGGAGTTCATCCCCAGTC
Found at i:942618 original size:26 final size:26
Alignment explanation
Indices: 942570--942620 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
942560 TGGCTTAGGT
*
942570 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATATCTAAGC
942596 ATACGGAGTTCATTCCCA-ATCTAAG
1 ATACGGAGTTCATT-CCATATCTAAG
942621 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATATCTAAGC
Found at i:942955 original size:26 final size:26
Alignment explanation
Indices: 942926--942977 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
942916 TGACTTAGGC
942926 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
* *
942952 ATACGGAGTTCATTCCTAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
942978 TCAGATCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGA
Found at i:943386 original size:26 final size:26
Alignment explanation
Indices: 943350--943402 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
943340 GTTGGCTTAG
*
943350 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
943376 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
943402 G
1 G
943403 ATTTTAAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:944359 original size:171 final size:171
Alignment explanation
Indices: 944063--944382 Score: 437
Period size: 171 Copynumber: 1.9 Consensus size: 171
944053 TTTCGTGAGT
**
944063 TGACTTAGGCATACGAAGTTCATCCCCTATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
1 TGACTTAGGCATACGAAGTTCATCCCCTATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
944128 GACCAGATTGAGGGTTACGGCAACAGGATCGGCAGCATGCAGGGGGGATCGGATCGATCCCTGGC
66 GACCAGATCGAGGGTTACGGCAACAGGATCGACAGCACGCAGGGGGGACCGGACCGATCCCCGGC
**
944193 TTGCGCATTCTGCCTCTCCAGCCAGCTGAGCACCCATGGGA
131 TTGCAAATTCTGCCTCTCCAGCCAGCTGAGCACCCATGGGA
* * * * *
944234 TGACTTAGGCATACGGAGTTCATCCCC-AGTCTAAGCATACAGAGTTTATTCCTAGTTTAAGATT
1 TGACTTAGGCATACGAAGTTCATCCCCTA-TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* * *
944298 TGACCAGATCGAGGGTTGCGGCAACAGGATCGATAGCACGCAGGGGGGACCAGG-CCGATCCCCG
65 AGACCAGATCGAGGGTTACGGCAACAGGATCGACAGCACGCAGGGGGGACC-GGACCGATCCCCG
*
944362 GCTTGCAAATTTTGCCTCTCC
129 GCTTGCAAATTCTGCCTCTCC
944383 GGCCGGGTGA
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
170 1 0.01
171 125 0.98
172 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (171 bp):
TGACTTAGGCATACGAAGTTCATCCCCTATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
GACCAGATCGAGGGTTACGGCAACAGGATCGACAGCACGCAGGGGGGACCGGACCGATCCCCGGC
TTGCAAATTCTGCCTCTCCAGCCAGCTGAGCACCCATGGGA
Found at i:944782 original size:159 final size:157
Alignment explanation
Indices: 944309--944808 Score: 547
Period size: 158 Copynumber: 3.2 Consensus size: 157
944299 GACCAGATCG
* * * * * * **
944309 AGGGTTGCGGCAACAGGATCGATAGCACGCA-GGGGGGACCAGGCCGATCCCCGGCTTGCAAATT
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATT
* * *
944373 TTGCCTCTCCGGCCGGGTGAGCGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
66 ATGCCTCTCCGGTC-GGTGAGCGCCCGCACGT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* *
944438 CAATCCATGTCTAAGCCCCAGCCGGACCA
129 CATTCCATGTCTAAGCCCCAGTCGGACCA
* * * * * ** *
944467 ACGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGAGATCGGGCCGATCTTCGGCTTCCGCATT
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATT
* * * *
944532 ATGCCTCTTCGGTCGGTCAGCGCCCGCACGTTCGTTTCATGGGTTGACTTATGCATACGGAGTTC
66 ATGCCTCTCCGGTCGGTGAGCGCCCGCACG-TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* ** * * *
944597 ATTCCCA-ATCTAAG-ATCGGATTGGACCG
130 ATT-CCATGTCTAAGCCCCAG-TCGGACCA
* * *
944625 AGGGTTGTGGCAGCAGGATCGACAGCACCCAGGGGGGGATCGGGCCGATCCCCGACTTGCGCATT
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATT
*** * * *
944690 CCACCTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGTTTAGGCATACGAAGTT
66 ATGCCTCTCCGGTCGG-TGAGCGCCCGCACG-TCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
944755 CATTCCATGTCTAAGCCCCAGTCGGACCA
129 CATTCCATGTCTAAGCCCCAGTCGGACCA
*
944784 AGGGTTGTGGCAGTAGGACCGACAG
1 AGGGTTGTGGCAGCAGGACCGACAG
944809 TGGGATTGAC
Statistics
Matches: 274, Mismatches: 61, Indels: 13
0.79 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 150 0.55
159 120 0.44
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (157 bp):
AGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATT
ATGCCTCTCCGGTCGGTGAGCGCCCGCACGTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCCCCAGTCGGACCA
Found at i:944963 original size:26 final size:26
Alignment explanation
Indices: 944927--944979 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
944917 GTTGACTTAG
944927 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
944953 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
944979 G
1 G
944980 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:945147 original size:26 final size:26
Alignment explanation
Indices: 945111--945180 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
945101 GTTGGCTTAG
945111 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
945137 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
945163 GCATACGGA-TTGCATTCC
1 GCATACGGAGTT-CATTCC
945181 CATCTAAGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 2 0.05
26 39 0.95
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:945899 original size:26 final size:26
Alignment explanation
Indices: 945863--945912 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
945853 GACTTAGGCC
945863 TACGGAGTTCA-TCACCAGTCTAAGCA
1 TACGGAGTTCATTC-CCAGTCTAAGCA
945889 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
945913 ATCGAAACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:946897 original size:367 final size:349
Alignment explanation
Indices: 945973--946982 Score: 981
Period size: 354 Copynumber: 2.8 Consensus size: 349
945963 GACCGAGTCG
* * * * * * * * * * *
945973 ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGTGGCTGCATGCTCGTTTCACGGGTCA
1 ATCCCCGACTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGT-T
* * *
946038 GCTTCGACATATGGAGTTCATTCCATGTCTAAGCATGTA-GAGTTCATTCCCAGTCTAAGATCAG
65 GCTTAGGCATATGGAGTTCATCCCA-GTCTAAGCA--TACGAGTTCATTCCCAGTCTAAGATCAG
* * * * * *
946102 ACTAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGAAAGAGGGATCGGG-TAGATCCTT-GA
127 ACCAGA-CGAGGGTTGCGGCAGTAGGATCGGTAGCACG-TAGGGGGATCGGGCT-GAT-CTTGGC
* * * *
946165 TTACGCATTCTACCTCTTCGATCGGTTGAGCGCCTGCACGCTCATTTCGTGTGTTGGCTTAGGCA
188 TTGCGCATTCTACCTCTCCGATCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCA
* * *
946230 TACGGAGTTCATTCCATGTCTAAGCCCCAGCCATACCCAGGGTTGTGGTAGCAGGATCGGCAGTG
253 TACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCCAGGGTTATGGTAGCAGGATCGGCAGCG
* * * *
946295 AGATCGGTAGCACGTAGAGGGGGATCGGGCTG
318 AGATCGATAGCACATAGAGGGGGATCGAGCTA
* * * * *
946327 ATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTGAACGCCCGAACGCTCGTTTCGTGGGTTG
1 ATCCCCGACTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
946392 ACTTAGGTATATAGAGTTCATCCCCAGTCTAAGGATACAGAGTTCATTCCCAGTCTAAGATC-GA
66 -CTTAGGCATATGGAGTTCAT-CCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCAG-
* * * * * ** *
946456 ACCAGACAAAGGGTTGCGGCAGTTGGATCGATAGTACGTAGGGGGATCGAGCCAATCCTCGGCTT
127 ACCAGAC-GAGGGTTGCGGCAGTAGGATCGGTAGCACGTAGGGGGATCGGGCTGAT-CTTGGCTT
* * * * *
946521 GCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGTACGTTCGTTT-GATGGGTTGGATTAGGCAT
190 GCGCATTCTACCTCTCCGATCGGTTGAGCGCCCGCACGCTCATTTCG-TGGGTTGGCTTAGGCAT
* * * *
946585 ACGGAGGTCATTCCATGTCTAAACCCCAGCCAGACCGAGGGTTATGGTAGTAGGA-CTGGCAGCG
254 ACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCCAGGGTTATGGTAGCAGGATC-GGCAGCG
*
946649 GGATCGATAGCACATAGAGGGTGG-TCGAGCTA
318 AGATCGATAGCACATAGAGGG-GGATCGAGCTA
*
946681 ATCCTCGACTTACGCATTATGCCTCTTCGGTCGGCCTCTCCGATCGACTGAGCGCCCGCACGCTC
1 ATCCCCGACTTACGCATTA-----------T--GCCTCTCCGATCGACTGAGCGCCCGCACGCTC
* *
946746 GTTTCATGGGTTGCCTTAGGCATAGGGAGTTCATCCCTAGTCTAAGCATACGAGTTCATTCCCAA
53 GTTTCATGGGTTG-CTTAGGCATATGGAGTTCATCCC-AGTCTAAGCATACGAGTTCATTCCCAG
* * * * * * *
946811 TCTAAGATCAGACCGGATCGAGTGTTGCGGCAGTAAGATCGGCAGCATGCTGGGGGGACCGGGCT
116 TCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGTAGGATCGGTAGCACG-TAGGGGGATCGGGCT
* * * * * *
946876 GATCTTGGGCTTGCGCATTCTACCTCTCCAACCGGTTGAGTGCCCGCATGCCCTTTTCGTGGGTT
179 GATCTT-GGCTTGCGCATTCTACCTCTCCGATCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTT
* *
946941 GGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
243 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
946983 GAAATTAGGG
Statistics
Matches: 532, Mismatches: 94, Indels: 47
0.79 0.14 0.07
Matches are distributed among these distances:
352 2 0.00
353 20 0.04
354 279 0.52
355 5 0.01
365 1 0.00
366 54 0.10
367 170 0.32
368 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (349 bp):
ATCCCCGACTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTG
CTTAGGCATATGGAGTTCATCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCAGACCA
GACGAGGGTTGCGGCAGTAGGATCGGTAGCACGTAGGGGGATCGGGCTGATCTTGGCTTGCGCAT
TCTACCTCTCCGATCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCAGACCCAGGGTTATGGTAGCAGGATCGGCAGCGAGATCGAT
AGCACATAGAGGGGGATCGAGCTA
Found at i:947294 original size:26 final size:26
Alignment explanation
Indices: 947264--947316 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
947254 GTTGGCTTAG
*
947264 GCATACGGAGTTCGTT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
947290 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
947316 G
1 G
947317 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:948016 original size:26 final size:26
Alignment explanation
Indices: 947987--948036 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
947977 GTTAACTTAG
947987 GCATACGGAGTTCATCCCCAGTCTCA
1 GCATACGGAGTTCATCCCCAGTCTCA
* * *
948013 GCATATGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
948037 AAGATCAGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTCA
Found at i:948498 original size:158 final size:157
Alignment explanation
Indices: 948013--948503 Score: 458
Period size: 159 Copynumber: 3.1 Consensus size: 157
948003 CCCAGTCTCA
* * * * * **
948013 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
948078 GCACGCA-GGGGAATCGGGTCGATCCCCAGCTTACGCATTCTGCC-TCCCTGGCCGACTGAGCGC
66 GCACGCAGGGGGACT-GGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCC-AGTCGACTGAGCGC
948141 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * *
948170 GCATAGGGAGTTCATT-CCATGTCGAAGCCCCA-ACCGGACCGAGGGTTATGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAG-GATCG
* * * * *
948232 ACAGCACACAGAGGGGGACTAGGTCGATCCCAGGCTTGCGCATTATGCCTCTT-CAGTCGACTCA
63 ACAGCACGC--AGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCT-TTCCAGTCGACTGA
* * * * *
948296 GTGCGTC-CATGCTCGTTTCG-GGGCTTGACTTAT
125 GCGC-CCGCACGCTCGTTTCGTGGG-TTGGCTTAG
* * ** * * *
948329 GCATACAGAGTTCATTCCCAGTTTAAGATTGGACGGGACCGAGGGTTGCGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
948394 GCACGCAGGAGGGACTGGGCCGATCCCCGGCTTGTGCATTCTGCCTTTCCAGTCGGCTGAGCGCC
66 GCACGCAGG-GGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCAGTCGACTGAGCGCC
*
948459 CGCACGCTCATTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
948487 GTATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
948504 TAGGTCTAAG
Statistics
Matches: 260, Mismatches: 57, Indels: 33
0.74 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 56 0.22
158 81 0.31
159 107 0.41
160 12 0.05
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCAGTCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:948525 original size:26 final size:25
Alignment explanation
Indices: 948489--948565 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 25
948479 TGGCTTAGGT
948489 ATACGGAGTTCATTCTAGGTCTAAGC
1 ATACGGAGTTCATTCTA-GTCTAAGC
* *
948515 ATACGAAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCTA-GTCTAAGC
*
948541 ATATGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATTCT-AGTCTAAG
948566 ATTTTGAGCC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
26 43 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (25 bp):
ATACGGAGTTCATTCTAGTCTAAGC
Found at i:949751 original size:26 final size:26
Alignment explanation
Indices: 949721--949773 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
949711 GCTGACTTAG
949721 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
949747 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
949773 G
1 G
949774 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:950476 original size:25 final size:25
Alignment explanation
Indices: 950428--950478 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
950418 GTTGACTTAG
*
950428 GCATACGAAGTTCATCCCACTCTAA
1 GCATACGAAGTTCATCCCAATCTAA
**
950453 GCATACGAAGTTCATTTCAATCTAA
1 GCATACGAAGTTCATCCCAATCTAA
950478 G
1 G
950479 ATAAGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAATCTAA
Found at i:950908 original size:156 final size:158
Alignment explanation
Indices: 950525--950951 Score: 454
Period size: 156 Copynumber: 2.7 Consensus size: 158
950515 TAGCACTCAG
* * * ** * *
950525 GAGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCTTGCACCCC
1 GAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCT
* * *
950590 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGG
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGCCAGACCGAGGG
* * ** * *
950655 TTGTGGCAGTGAGATCTGCAGCATGTAGA
131 -TGTGACAGAGAGATCAACAGCACGAAGA
* * * * * * ** *
950684 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCT-CTAGCCGGTTGAGCGCCCGTACGC
1 GAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-TCGACTGAGCGCCCGCACGC
* * **
950748 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACC-GAATTG
65 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCTAG-CCAG-ACCG
*
950810 A-GG-GTGACAGCAG-GATCAACAGCACGAAGT
127 AGGGTGTGACAG-AGAGATCAACAGCACGAAGA
* * *
950840 GAGGGACCGGGCCGATCCCCGGGTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCACACGCT
1 GAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCT
950905 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
950952 CATACGGAGT
Statistics
Matches: 218, Mismatches: 43, Indels: 17
0.78 0.15 0.06
Matches are distributed among these distances:
155 3 0.01
156 110 0.50
157 3 0.01
158 7 0.03
159 92 0.42
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGCCAGACCGAGGG
TGTGACAGAGAGATCAACAGCACGAAGA
Found at i:950955 original size:26 final size:26
Alignment explanation
Indices: 950925--950977 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
950915 GTTGGCTTAG
950925 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
950951 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
950977 G
1 G
950978 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:952047 original size:159 final size:155
Alignment explanation
Indices: 951672--952096 Score: 433
Period size: 159 Copynumber: 2.7 Consensus size: 155
951662 TAAGCATACA
* * * *
951672 AGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGCAGTAGGATCGATAGCACGCAG
1 AGTTCATT-CCAGTCTAAGATCA-ACTGAACCAAGGGTTGCAGCAG-AGGATCGACAGCACGCAG
* * * * * *
951737 GAGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACTCGCATGCC
63 GAGGGATCGGATCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCC
* *
951802 CATTTCATGGGTGTGCTTAGGCATAGGG
128 CATTCCATGGGTGTGCTTAGGCATACGG
* ** * ** * * *
951830 AGTTCATTCCATGTTTAAGCCCCAACTGAACTAAGGGTTGTGGCAGTGAGACCAACAGCACGCA-
1 AGTTCATTCCA-GTCTAAG-ATCAACTGAACCAAGGGTTGCAGCAGAG-GATCGACAGCACGCAG
**
951894 GAGGGAGATCGGATCGATCCTTGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCGCACG
63 GA-GG-GATCGGATCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCGCACG
*
951959 CTCATTCCATGGGT-TGACTTAGGCATACGG
126 CCCATTCCATGGGTGTG-CTTAGGCATACGG
*
951989 AGTTCATTCCTAGTCTAAGATCGAACCGAACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAG
1 AGTTCATTCC-AGTCTAAGATC-AACTGAACCAAGGGTTGCAGCAG-AGGATCGACAGCACGCAG
* * * * * *
952054 GGGGGATAAGG-TCGGTCCCCGGCTTGCACATTCTACCTCTCCG
63 GAGGGAT-CGGATCGATCCCCGGCTTGCGCATTATGCCTCTCCG
952097 GCCTGCTGAG
Statistics
Matches: 214, Mismatches: 42, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
157 6 0.03
158 76 0.36
159 129 0.60
160 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (155 bp):
AGTTCATTCCAGTCTAAGATCAACTGAACCAAGGGTTGCAGCAGAGGATCGACAGCACGCAGGAG
GGATCGGATCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCCCAT
TCCATGGGTGTGCTTAGGCATACGG
Found at i:952909 original size:26 final size:26
Alignment explanation
Indices: 952870--952925 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
952860 TGGGTTGACT
*
952870 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
952896 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
952922 TAAG
1 TAAG
952926 ATTAAATCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:953607 original size:26 final size:26
Alignment explanation
Indices: 953577--953655 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
953567 GTTGACTTAG
*
953577 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTCTAA
953603 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
953629 GCGTACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
953655 G
1 G
953656 ATTGAACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:954149 original size:26 final size:26
Alignment explanation
Indices: 954101--954151 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
954091 TGGCTTAGGT
*
954101 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATATCTAAGC
954127 ATACGGAGTTCATTCC-TAATCTAAG
1 ATACGGAGTTCATTCCAT-ATCTAAG
954152 ATCAAACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATATCTAAGC
Found at i:954551 original size:26 final size:26
Alignment explanation
Indices: 954501--954553 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
954491 GTTGGCTTAG
*
954501 GCATATGGAGTTCATTCCTTGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
954527 GCATATGGAGTTCATTCTCAT-TCTAA
1 GCATATGGAGTTCATTC-CATGTCTAA
954553 G
1 G
954554 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:956419 original size:158 final size:158
Alignment explanation
Indices: 956123--956618 Score: 400
Period size: 158 Copynumber: 3.1 Consensus size: 158
956113 CTAAGAATAT
* * *
956123 GGAGTTCATTCCCA-GTCTAAGATCGAACCGGATCGAGGGTTACGGCACTAGGATCGATAGCACG
1 GGAGTTCATT-CCATGTCTAAGACCGAACCGGATCGAGGGTTACGGCACTAGGACCGACAGCACG
** * * * * *
956187 GAGGGTGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAACGCCCGCAC
65 GAGGGTGGACCAGGTCGAAACCTAGCTTGCGCATTATGCCTCTCCGACTGACTCAACGCCCGAAC
* * *
956252 GCCCGTTTCGTGGGTTGGCTTAGGCATAG
130 GCCCATTTCGTGGGTTGACTTAGGCATAC
* ** *
956281 GGAGTTCATTCCATGTCTAAG-CCGTAGCCGGATCGAGGGTTGTGGCAAC-AGGACCGGCAGCAC
1 GGAGTTCATTCCATGTCTAAGACCG-AACCGGATCGAGGGTTACGGC-ACTAGGACCGACAGCAC
* * *
956344 GCAGAGGG-GGA-CAGGTCGAAACCTAGCTTGTGCATTATGCCTCTCCGA-TCGACTCAACGTCG
64 G--GAGGGTGGACCAGGTCGAAACCTAGCTTGCGCATTATGCCTCTCCGACT-GACTCAACGCCC
*
956406 GAACGCTCATTTCGTGGGTTGACTTAGGCATAC
126 GAACGCCCATTTCGTGGGTTGACTTAGGCATAC
* * * * * * * *
956439 AGAGTTCATTCC-TAGTCTAAGATCAAACC-GAACTGAGGGTTGCGGTAGC-AGGATCGACAGTA
1 GGAGTTCATTCCAT-GTCTAAGACCGAACCGGATC-GAGGGTTACGGCA-CTAGGACCGACAGCA
* * * * ** * * * * * * *
956501 CGTAGGGGGTGACC-GGGCCAGTCCCCAGCTTGCGCATTCTACCTCTCCAACCGACTGAGCGCCC
63 CGGAGGGTG-GACCAGGTCGA-AACCTAGCTTGCGCATTATGCCTCTCCGACTGACTCAACGCCC
* * * * *
956565 GCACGCTCGTTTCATGGGTTGCCTTAGGCATAC
126 GAACGCCCATTTCGTGGGTTGACTTAGGCATAC
956598 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
956619 CATACAGAGT
Statistics
Matches: 271, Mismatches: 51, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
156 4 0.01
157 12 0.04
158 165 0.61
159 84 0.31
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GGAGTTCATTCCATGTCTAAGACCGAACCGGATCGAGGGTTACGGCACTAGGACCGACAGCACGG
AGGGTGGACCAGGTCGAAACCTAGCTTGCGCATTATGCCTCTCCGACTGACTCAACGCCCGAACG
CCCATTTCGTGGGTTGACTTAGGCATAC
Found at i:956622 original size:26 final size:25
Alignment explanation
Indices: 956592--956643 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
956582 GTTGCCTTAG
*
956592 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
956618 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
956643 G
1 G
956644 ATCTGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:956837 original size:26 final size:26
Alignment explanation
Indices: 956801--956853 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
956791 GTTGACTTAG
*
956801 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
956827 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
956853 G
1 G
956854 ATAGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:957181 original size:26 final size:26
Alignment explanation
Indices: 957144--957196 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
957134 GTTGGCTTAG
957144 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
957170 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
957196 G
1 G
957197 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:957341 original size:552 final size:550
Alignment explanation
Indices: 956534--958139 Score: 1753
Period size: 552 Copynumber: 2.9 Consensus size: 550
956524 CCCAGCTTGC
** ** * * *
956534 GCATTCTACCTCTCCAACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGCCTTAGGCATACG
1 GCATTCTACCTCTCCGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
956599 GAGTTCATTCCATGTCTAAGCATACAGAGTTCATT-CCAGTCTAAGATCTGATCGGATCGAGGGT
66 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGT
* * * *
956663 TGCAACAGTAGGACCAGCAGCAGGATCGGTAGCACGCAGGGGAGACCGGGTCGATCCCTAACTTT
131 TGCAACAGTAGGACCAGCAGCAGGATC-GTAGCACGCAGAGG-GACTGGGTCGATCCTTGACTTT
** * * * * * **
956728 TGCATTCTGCCTCTCTAATC-AGCCTCTTCG-GTCGGTTGAGCACCTGCACAT-TTTTTTTCGTG
194 TGCATTCTGCCTCTCCGACCGA-CCTC-TCGACT-GGATGAGCACCTG--TATGCTCATTTCGTG
*
956790 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
254 GGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
* * * *
956855 TAGAATCGAACCGAAGGTTGCGA-CAGCAGGATCGACAGCATGCAGGGGGGACCGGGTCGATCCC
319 TAGAATCGAACCGAGGGTTGCGACCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGTCGATCCC
* * **
956919 CGGCTTGTGCATTCTGCCTCTTTGGCCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTA
384 CAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTA
* * * * *
956984 GGCATAGGGAGTTCATTCCATGTCTAAGTCCCAACCGGACCGAGGGTTGTGGCAGCGGGA-TCGA
449 GGCATAGAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGCAGCGAGACT-GA
* * * *
957048 CATAACGCAGAGAGGGATCGGGTCGATCCCCGACTTAT
513 CAGAAAGCAGAGAGGGATCGAGCCGATCCCCGACTTAT
* * * * *
957086 GCATTCTTCCTTTCCGGTCTGTTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
1 GCATTCTACCTCTCCGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* *
957151 AAGTTCATTCCATGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGATCAGACCGGA-CTGAGGG
66 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGG
* * * * *
957215 TTGCAACCGTAGGACCAGCAGTAGGATCAGCAGCACACATGAGGGACTGGGCCGATCCTTGACTT
130 TTGCAACAGTAGGACCAGCAGCAGGATC-GTAGCACGCA-GAGGGACTGGGTCGATCCTTGACTT
* * *
957280 TTGCATTCTGCCTCTCCGACCGACCTATCCGACTGGAAGAGCACCTGTATGCTCGTTTCGTGGGT
193 TTGCATTCTGCCTCTCCGACCGACCTCT-CGACTGGATGAGCACCTGTATGCTCATTTCGTGGGT
* * * * *
957345 TGACTTAGGCATACAAAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTG
257 TGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATAG
* * * ** * * * *
957410 AATTGTATCGAGGGTTGC-AGTAGTAGGATCGGTAGCACGCAAGGGGGATCGAG-CTGATCCCCA
322 AATCGAACCGAGGGTTGCGACCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGTC-GATCCCCA
* * * * * * * **
957473 GCTTGCGCATTATGCCTCTCCGGCCGACTAAGCACTCGTATGCCCATTTTGTGGGTTGGCTTAGG
386 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGG
* *
957538 CATAGTGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGAGACTGACAG
451 CATAGAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGCAGCGAGACTGACAG
* *
957603 AAAGCAGAGGGGGATCGAGCCGATCCTCGACTTAT
516 AAAGCAGAGAGGGATCGAGCCGATCCCCGACTTAT
**
957638 GCATTCTACCTCTCCGGCCGGTTGAAAGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
1 GCATTCTACCTCTCCGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* *
957703 GAGTTCATTCCATGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGT
66 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGT
* * * * * *
957768 TACAACAGCAAGACCAGGAGCCGGATTCGTAGCACGCAGAGGGGA-TCGAGTCGATCCTTGACTT
131 TGCAACAGTAGGACCAGCAGCAGGA-TCGTAGCACGCAGA-GGGACT-GGGTCGATCCTTGACTT
** * * * * * * ** * *
957832 GCGCATTCTACCTCTCCGACCGGCCCCTCTAGCTAGCTGAGTGCCCGTAAGCTCATTTCGTGGGT
193 TTGCATTCTGCCTCTCCGACCGACCTCTCGA-CTGGATGAGCACCTGTATGCTCATTTCGTGGGT
* * * *
957897 TGGCTTAGGCATACGAAGTTCAT-TCCATGTTTAAGCATACGAAGTTCATTCCCAATCTAAGATT
257 TGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAATCTAAGA-T
* * *
957961 A-AACCGGACCGAGGGTTGCGGTAGTAGGACCAAAGCAGGATCGGCAGCACGCAGAGGGGGATTG
320 AGAATCGAACCGAGGGTTGC--------GACC--AGCAGGATCGGCAGCACGCAG-GGGGGATCG
* * * ** * *
958025 GGTCGATCCCTAGCTTGCACATTCT-CTCTCTCCGACTAGTTGAGCGCCCGTACGCTCGTTTCAT
374 GGTCGATCCCCAGCTTGCGCATTCTGC-CTCTCCGGCCGGCTGAGCGCCCGTACGCTCATTTCAT
* *
958089 GGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCCCCAACCAGAC
438 GGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAACCAGAC
958140 TGAGAGTTAT
Statistics
Matches: 865, Mismatches: 158, Indels: 50
0.81 0.15 0.05
Matches are distributed among these distances:
551 11 0.01
552 616 0.71
553 114 0.13
554 5 0.01
561 1 0.00
563 19 0.02
564 98 0.11
565 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (550 bp):
GCATTCTACCTCTCCGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGT
TGCAACAGTAGGACCAGCAGCAGGATCGTAGCACGCAGAGGGACTGGGTCGATCCTTGACTTTTG
CATTCTGCCTCTCCGACCGACCTCTCGACTGGATGAGCACCTGTATGCTCATTTCGTGGGTTGAC
TTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATAGAATC
GAACCGAGGGTTGCGACCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTG
CGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATAG
AGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGCAGCGAGACTGACAGAAAGC
AGAGAGGGATCGAGCCGATCCCCGACTTAT
Found at i:957735 original size:26 final size:26
Alignment explanation
Indices: 957699--957748 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
957689 GGCTTAGGCA
957699 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGTTCATTCCCA-GTCTAAGCT
957725 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
957749 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:957957 original size:26 final size:26
Alignment explanation
Indices: 957905--957957 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
957895 GTTGGCTTAG
* *
957905 GCATACGAAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATATCTAA
957931 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
957957 G
1 G
957958 ATTAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:958058 original size:209 final size:209
Alignment explanation
Indices: 957673--958060 Score: 505
Period size: 209 Copynumber: 1.9 Consensus size: 209
957663 AAGCCTGCAC
* * * *
957673 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTTACGGAGTTCATT
1 GCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATT
* * * * * *
957738 CCCAGTCTAAGATCAGACCAGATCGAGGGTTACAACAGCAAGACCAGGAGCCGGATTCGTAGCAC
66 CCCAATCTAAGATCAAACCAGACCGAGGGTTACAACAGCAAGACCAGAAGCAGGATTCGCAGCAC
* *
957803 GCAGAGGGGATCGAGTCGATCCTTGACTTGCGCATTCTACCTCTCCGACCGGCCCCTCTAGCTAG
131 GCAGAGGGGATCGAGTCGATCCTAGACTTGCACATTCTACCTCTCCGACCGGCCCCTCTAGCTAG
957868 CTGAGTGCCCGTAA
196 CTGAGTGCCCGTAA
*
957882 GCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTTTAAGCATACGAAGTTCATT
1 GCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATT
* * * *** * *
957947 CCCAATCTAAGATTAAACCGGACCGAGGGTTGCGGTAGTAGGACCA-AAGCAGGA-TCGGCAGCA
66 CCCAATCTAAGATCAAACCAGACCGAGGGTTACAACAGCAAGACCAGAAGCAGGATTC-GCAGCA
* *
958010 CGCAGAGGGGGATTGGGTCGATCCCTAG-CTTGCACATTCT-CTCTCTCCGAC
130 CGCAGA-GGGGATCGAGTCGAT-CCTAGACTTGCACATTCTAC-CTCTCCGAC
958061 TAGTTGAGCG
Statistics
Matches: 152, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
207 2 0.01
208 18 0.12
209 128 0.84
210 4 0.03
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (209 bp):
GCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATT
CCCAATCTAAGATCAAACCAGACCGAGGGTTACAACAGCAAGACCAGAAGCAGGATTCGCAGCAC
GCAGAGGGGATCGAGTCGATCCTAGACTTGCACATTCTACCTCTCCGACCGGCCCCTCTAGCTAG
CTGAGTGCCCGTAA
Found at i:958323 original size:26 final size:26
Alignment explanation
Indices: 958287--958337 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
958277 TGACTTAGGT
*
958287 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAATCTAAGC
*
958313 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATCCCCAATCTAAG
958338 ATCAGACAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAATCTAAGC
Found at i:958854 original size:26 final size:26
Alignment explanation
Indices: 958818--958868 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
958808 TAGCTTAGGC
958818 ATACAGAGTTCATT-CCATGTCTAAGG
1 ATACAGAGTTCATTCCCA-GTCTAAGG
*
958844 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
958869 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:959415 original size:26 final size:26
Alignment explanation
Indices: 959365--959416 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
959355 GTTGACTTAG
* *
959365 GCATACGGAGTTTATCTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAATCTAA
959391 GCATACGGAGTTCAT-TCCCAATCTAA
1 GCATACGGAGTTCATCT-CCAATCTAA
959417 AATCAGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAATCTAA
Found at i:959902 original size:26 final size:26
Alignment explanation
Indices: 959866--959917 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
959856 TTGGCTTAGT
959866 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
959892 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
959918 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:960274 original size:26 final size:26
Alignment explanation
Indices: 960244--960296 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
960234 GTTGACTTAG
960244 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
960270 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
960296 G
1 G
960297 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:960470 original size:26 final size:26
Alignment explanation
Indices: 960440--960492 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
960430 GTTGGCTTAG
960440 GCATACAG-AGCTCATT-CCATGTCTAA
1 GCATA-AGAAGCTCATTCCCA-GTCTAA
*
960466 GCATAAGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGCTCATTCCCAGTCTAA
960492 G
1 G
960493 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 19 0.79
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGCTCATTCCCAGTCTAA
Found at i:967153 original size:36 final size:36
Alignment explanation
Indices: 967082--967154 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
967072 GATCAGATCG
* *
967082 GATCGAGGGTTGCAGTAGCAGGATCGATAGCACGTA
1 GATCGAGGGTTGCAGTAGCAGGATCAACAGCACGTA
*
967118 GATCGAGGGTTGC-GATAGCAGGATCAACAGTACGTA
1 GATCGAGGGTTGCAG-TAGCAGGATCAACAGCACGTA
967154 G
1 G
967155 GGTAGACCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
35 1 0.03
36 32 0.97
ACGTcount: A:0.29, C:0.16, G:0.36, T:0.19
Consensus pattern (36 bp):
GATCGAGGGTTGCAGTAGCAGGATCAACAGCACGTA
Found at i:967587 original size:26 final size:25
Alignment explanation
Indices: 967557--967608 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
967547 GTTGGCTTAG
967557 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
967583 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
967608 G
1 G
967609 ATTTTATGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:968303 original size:159 final size:158
Alignment explanation
Indices: 967924--968312 Score: 426
Period size: 159 Copynumber: 2.4 Consensus size: 158
967914 CTAAGCTTAT
* * * * * *
967924 GGAGTTCATTCCCAGTCTAAGATTGGATCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGC
1 GGAGTTCATTCTCAGTCTAAGATCGAACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCATGC
* * * *
967989 AAAGGGGACCGGGCCGATCCTCAGCTTGCACATTCTACCTCTCCGGCCAGCTGAGCGCCCGTACG
66 AGAGGGGACCGGGCCGATCCTCAGCTTGCACATTCTACCTCTCCGACCAGCTCAGCGCCCGCACG
*
968054 CTTCTTTCATGGGTTGGCTTAGGCATAC
131 CTTCTTTCATGGGTTGACTTAGGCATAC
* ** * * * **
968082 AGAGTTCATT-TCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTTACAGCAGGATCTG-CAGCAT
1 GGAGTTCATTCTCA-GTCTAAGATCGAACCAGACCAAGGGTTGCGACAGCAGGATC-GACAGCAT
* ** * ***
968145 GCAGAGAGGGACCGGGCCGATCCTCGGCTTGTGCATTAC-GCCTCTCCGATTGGCTCAGCGCCCG
64 GCAGAG-GGGACCGGGCCGATCCTCAGCTTGCACATT-CTACCTCTCCGACCAGCTCAGCGCCCG
*
968209 CACGC-TCGTTTCGTGGGTTGACTTAGGCATAC
127 CACGCTTC-TTTCATGGGTTGACTTAGGCATAC
* * *
968241 GGAGTTCATTCTCAGTCTAAGATCGAACCAGACCGAGGGTTACGATAGCAGGATCGACAGCATGC
1 GGAGTTCATTCTCAGTCTAAGATCGAACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCATGC
968306 AGTAGGG
66 AG-AGGG
968313 ATCGAGTCGG
Statistics
Matches: 185, Mismatches: 38, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 52 0.28
159 125 0.68
160 6 0.03
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GGAGTTCATTCTCAGTCTAAGATCGAACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCATGC
AGAGGGGACCGGGCCGATCCTCAGCTTGCACATTCTACCTCTCCGACCAGCTCAGCGCCCGCACG
CTTCTTTCATGGGTTGACTTAGGCATAC
Found at i:969081 original size:26 final size:26
Alignment explanation
Indices: 969045--969097 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
969035 GTTGACTTAG
*
969045 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
969071 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
969097 G
1 G
969098 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:969116 original size:343 final size:343
Alignment explanation
Indices: 968651--969413 Score: 1001
Period size: 343 Copynumber: 2.2 Consensus size: 343
968641 TCTCCGGCCA
* * * * * *
968651 GCCTCTCCGACCGGCTGAGCACCTGCACGCTCGTTTCGTGAGTTGACTTAGCCATACGGAGTTCA
1 GCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
968716 TCCCCAGTCTAAGCATATGTAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTACGATA
66 TCCCCAGTCTAAGCATAAGTAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTACGACA
* * * * * * * *
968781 ATAGGATCAGCAGCACGCAAGGGGGACCGGGCTGATCCCCGTCTTGCGCATTCTGCCTCTCCGAC
131 ACAGCATCAGCAGCACGCAAGGCGGACCGAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGAC
* * * *
968846 CGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTA
196 CGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * *
968911 AACCCCAACCGGACCGAGGGTTGTGGTAGCGAAACCGACAGCATGCAGAGGGGGACTGAGCCGAT
261 AACCCCAACCAGACCGAGGGTTGTGGCAGCGAAACCGACAGCACGCAGAGGGGGACTGAGCCGAT
*
968976 CCTCGGCTTACGCATTAT
326 CCTCAGCTTACGCATTAT
* *
968994 GCCTCTTCGACCGGCTCAACGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
969059 TCCCCAGTCTAAGCATACAG-AGTTCATTGCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCGA
66 TCCCCAGTCTAAGCATA-AGTAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTTACGA
* * * * * * *
969122 CAGCAGCATCGGTAGCATGGAAGGCGGACCGAGCCGATCCCTGGCTTGCACATTTTACCTCTCCG
129 CAACAGCATCAGCAGCACGCAAGGCGGACCGAGCCGATCCCCGGCTTGCACATTCTACCTCTCCG
** *
969187 GTCGGCTGAGCACCCACATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
194 ACCGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * ** *
969252 TAAGCCCCAGCCAGACCGATGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCCG
259 TAAACCCCAACCAGACCGAGGGTTGTGGCAGCGAAACCGACAGCACGCAGAGGGGGACTGAGCCG
*
969317 ATCCTCAGCTTGCGCATTAT
324 ATCCTCAGCTTACGCATTAT
* * * * *
969337 GCCTCTTTGACCGGCTCAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTATGCATA-GGAGTTAA
1 GCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
969401 TTCCCAATCTAAG
66 TCCCCAGTCTAAG
969414 ATTTGATCGA
Statistics
Matches: 362, Mismatches: 56, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
342 19 0.05
343 342 0.94
344 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (343 bp):
GCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATAAGTAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTACGACA
ACAGCATCAGCAGCACGCAAGGCGGACCGAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGAC
CGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AACCCCAACCAGACCGAGGGTTGTGGCAGCGAAACCGACAGCACGCAGAGGGGGACTGAGCCGAT
CCTCAGCTTACGCATTAT
Found at i:969581 original size:26 final size:26
Alignment explanation
Indices: 969545--969597 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
969535 GTTGGCTTAG
*
969545 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
969571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
969597 G
1 G
969598 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:970304 original size:26 final size:26
Alignment explanation
Indices: 970268--970320 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
970258 GTTCACTTAG
970268 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
970294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
970320 G
1 G
970321 GTCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:970770 original size:26 final size:26
Alignment explanation
Indices: 970718--970770 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
970708 GTTGGCTGAG
*
970718 GCATACGAAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
970744 GCATACGGAGTTCATTCACA-GTCTAA
1 GCATACGAAGTTCATTC-CATGTCTAA
970770 G
1 G
970771 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:971131 original size:26 final size:26
Alignment explanation
Indices: 971085--971137 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
971075 GTTGACTTAG
*
971085 GCATACGGAGTTCATCACCAGTTTAA
1 GCATACGGAGTTCATCACCAGTCTAA
971111 GCATACGGAGTTCATTC-CCAGTCTAA
1 GCATACGGAGTTCA-TCACCAGTCTAA
971137 G
1 G
971138 GTCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:971418 original size:159 final size:160
Alignment explanation
Indices: 971166--971614 Score: 491
Period size: 159 Copynumber: 2.8 Consensus size: 160
971156 TTACAACAGT
* * * * * * *
971166 AGGATCGACAGCACGCAG-GGGGGATCGGACCGATCTCCAGCTTGCCCATTCTGCCTCTCCGGCC
1 AGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
* * *
971230 GACTGAGGGCCCGCACGC-CAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
66 GGCTGAGCGCCCGCACGCTCA-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * *
971294 AGCCCCAGTCGGATC-GAGGGTTGTGGCAGC
130 AGCACCAGACCGAGCTGAGGGTTGTGGCAGC
* *
971324 -GAGA-CTGGCAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGA
1 AG-GATC-GACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * * * * * *
971387 CCGGCTCAGCGCCCGTAAGCTCATTTTGTGGGTTGACTTATGCATACGGAGTGCATTCCCA-GTC
64 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTC
*
971451 TAAG-ATCAGACCGAGCTGAGGGTTGTGGCAGC
128 TAAGCACCAGACCGAGCTGAGGGTTGTGGCAGC
* * * ** * *
971483 AGGATCGATAGCATACA-AGGGGAACCATGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGACC
1 AGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
* * * *
971547 GGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
66 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
971612 GCA
131 GCA
971615 TATAGAGTTC
Statistics
Matches: 237, Mismatches: 44, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
157 5 0.02
158 111 0.47
159 114 0.48
160 7 0.03
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (160 bp):
AGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCACCAGACCGAGCTGAGGGTTGTGGCAGC
Found at i:971615 original size:26 final size:26
Alignment explanation
Indices: 971586--971638 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
971576 GTTGGCTTAG
*
971586 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
971612 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
971638 G
1 G
971639 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:972349 original size:26 final size:26
Alignment explanation
Indices: 972320--972372 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
972310 GTTGACTTAG
972320 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
**
972346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
972372 G
1 G
972373 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCCAGTCTAA
Found at i:975810 original size:25 final size:26
Alignment explanation
Indices: 975775--975826 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
975765 GTTGACTTAG
975775 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
975801 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
975826 G
1 G
975827 ATCGGATCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:976594 original size:26 final size:26
Alignment explanation
Indices: 976558--976610 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
976548 GTTGGCTTAG
976558 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
976584 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
976610 G
1 G
976611 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:977121 original size:353 final size:354
Alignment explanation
Indices: 976464--977145 Score: 818
Period size: 353 Copynumber: 1.9 Consensus size: 354
976454 TAAGATCGAT
* * * *
976464 AGCACGAAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGTAC
1 AGCACGAAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCAACCGACTGAGCAC
* ** * * **
976529 CCTCACACTCGTTTTGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAG
66 CCGCACACTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACAAAG
* * * * * *
976594 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGGATCGGTAGCACGCAGGG
131 TCCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGA
* * * ***
976659 GGGATCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACTGACTGAGCATAGACACTTTCG
196 GGGACCGAGCAGATCCCCAGCTTACGCATTCTACCTCTCCGACTGACTGAGCATAGACACGCCCG
* * * *
976724 TTTCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
261 TTTCATGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
976789 GTGGTAGCAGGATCGACAGCGGGATCGGC
326 GTGGTAGCAGGATCGACAGCGGGATCGGC
* * ** * * *
976818 AGCACGCAGAGGGGGACCGTGCTGATCCCTGGCTTACGTATTATGCCTCTCCAACCGACTGAGCG
1 AGCACGAAG-GGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCAACCGACTGAGCA
* * *
976883 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGGGTTCATCCCA-GTCTAAGCATACAAA
65 CCCGCACACTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACAAA
* * * **
976947 GTCCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCGTGCA-G
130 GTCCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGG
* * * *
977011 AGGGACCGAGCA-AGTCCCC-GACTTGCGCATTCTACCTCTCCGA-TCGGCTGAGCGTCCG-CAC
195 AGGGACCGAGCAGA-TCCCCAG-CTTACGCATTCTACCTCTCCGACT-GACTGAGCAT-AGACAC
** * * *
977072 GCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCGCAGCCAGATCGA
256 GCCCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGA
977137 GGGTTGTGG
321 GGGTTGTGG
977146 CAGTCGGACC
Statistics
Matches: 272, Mismatches: 51, Indels: 11
0.81 0.15 0.03
Matches are distributed among these distances:
352 3 0.01
353 108 0.40
354 75 0.28
355 86 0.32
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (354 bp):
AGCACGAAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCAACCGACTGAGCAC
CCGCACACTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACAAAG
TCCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGA
GGGACCGAGCAGATCCCCAGCTTACGCATTCTACCTCTCCGACTGACTGAGCATAGACACGCCCG
TTTCATGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GTGGTAGCAGGATCGACAGCGGGATCGGC
Found at i:977424 original size:159 final size:157
Alignment explanation
Indices: 976950--977439 Score: 436
Period size: 159 Copynumber: 3.1 Consensus size: 157
976940 ATACAAAGTC
* * * ** *
976950 CATTCC-TAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCGTGCA-GAG
1 CATTCCAT-GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGG
* * * * * * *
977013 GGACCGAG-CAAGTCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGTCCGCACGCCCG
65 GGACCGGGCCGA-TCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC-ACCGCACGCTCG
* * *
977077 TTTTGTGGGTTGGCTTAGGCATAGGGAGCT
128 TTTCGTGGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
977107 CATTCCATGTCTAAG-CCGCAGCCAGATCGAGGGTTGTGGCAGTC-GGACCGACAGCACGGAGAG
1 CATTCCATGTCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAG-CAGGATCGGCAGCACGCAG-G
* * * * * * *
977170 GGGGACCGGGCCGAT-CTCTGGCTTGCCCATTATGCCTCTTCGATCGGCTCAGTGATCGTACGCT
63 GGGGACCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG-CACCGCACGCT
* * * * **
977234 TGTTTCATGGGTTGACTTATGCATATAGAGTT
126 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
* *
977266 CATTCCCA-GTCTAAGATGGGACCAGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGG
1 CATT-CCATGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA-GGG
* * * *
977330 GGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCAGTTGAGCACCCGCACGCTCG
64 GGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA-CCGCACGCTCG
*
977395 TTTCGTGGGTTGGCTTAGGCCTACGGAGTT
128 TTTCGTGGGTTGGCTTAGGCATACGGAGTT
*
977425 CGTTCCATGTCTAAG
1 CATTCCATGTCTAAG
977440 CCCCAGTCAG
Statistics
Matches: 255, Mismatches: 63, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 40 0.16
158 9 0.04
159 192 0.75
160 11 0.04
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (157 bp):
CATTCCATGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGG
GACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCGCACGCTCGTTT
CGTGGGTTGGCTTAGGCATACGGAGTT
Found at i:977466 original size:159 final size:158
Alignment explanation
Indices: 977032--978080 Score: 457
Period size: 159 Copynumber: 6.5 Consensus size: 158
977022 AAGTCCCCGA
* * * *
977032 CTTGCGCATTCTACCTCTCCGATCGGCTGAGCGTCCGCACGCCCGTTTTGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGC-ACCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * *
977097 ATAGGGAGCTCATTCCATGTCTAAGCCGCAGCCAGATCGAGGGTTGTGGCAGTC-GGACCGACAG
65 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCAAGGGTTGTGGCAG-CAGGACCGACAG
*
977161 CACGGAGAGGGGGACCGGGCCGATCTCTGG
129 CACGCAGAGGGGGACCGGGCCGATCTCTGG
* * * * * * * * * * *
977191 CTTGCCCATTATGCCTCTTCGATCGGCTCAGTGATCGTACGCTTGTTTCATGGGTTGACTTATGC
1 CTTGCGCATTCTGCCTCTCCGATCGGCTGAG-CACCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
** **** * * * *
977256 ATATAGAGTTCATTCCCA-GTCTAAG-ATGGGACCAGACCGAA-GGTTGCGGCAGCAGGATCGGC
65 ATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGATC-AAGGGTTGTGGCAGCAGGACCGAC
* *
977318 AGCACGCAGGGGGGGATCGGGCCGATC-CTCGG
127 AGCACGCAGAGGGGGACCGGGCCGATCTCT-GG
* * *
977350 CTTGCGCATTCTGCCTCTCCGACCAGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * *
977415 CTACGGAGTTCGTTCCATGTCTAAGCCCCAGTCAGATCAAGGGTTATGGCAGCAGGACCGACAGT
65 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCAAGGGTTGTGGCAGCAGGA-C--C---
* * ***
977480 GGGATCGATAGCACGCAGAGGGGGA-CGGACTGATAC-CCAA
124 --GA-C---AGCACGCAGAGGGGGACCGGGCCGAT-CTCTGG
* * * ** * * * *
977520 CTTGCACATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTCGGC
1 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGC-ACCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * ** * * * ** * *
977585 ATATGGAGTTCATCCCATGTCTAAGCATACGAAGTTCA-TTCTCAGTCTAAGATCGG-ACCA-GA
65 ATACGGAGTTCATTCCATGTCTAAGC---CCCAG-CCAGATC-AAGGGT-TG-T-GGCAGCAGGA
* * * *** * * *
977647 ACGAGAGTTACG--GTAGCAAGATCGGTAACACG--CATC-GA
122 CCGACAG-CACGCAG-AGGGGGACCGG--GC-CGATC-TCTGG
* * * ** * * *
977685 CTTGCGCATTCTGCCTCTCCCACCGACTGAGTGCCAGCACACCCATTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACC-GCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * * *
977750 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CTGAGGATTGTGGCAGCAGGACCAACAG
65 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATC-AAGGGTTGTGGCAGCAGGACCGACAG
* *
977814 CACACAGAGGGGGATCGGGCCGATCT-TCGG
129 CACGCAGAGGGGGACCGGGCCGATCTCT-GG
* * * * * * * *
977844 CTTGCGCATTATGCCTCTTCGGTCGGCTCAATGC-CCGCACGCTCATTTCATGGGTTGACTTATG
1 CTTGCGCATTCTGCCTCTCCGATCGGCT-GA-GCACCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* *** * * * *
977908 CATACAGAGTTCATTCCCA-GTCTAAG-ATTAGACC-GAACTGAGGGTTGTGGCAGTAGGATCGA
64 CATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGATC-AAGGGTTGTGGCAGCAGGACCGA
* * * **
977970 CAGCACGCAGTGGGGGACCGGGCTGATCCCCAG
126 CAGCACGCAGAGGGGGACCGGGCCGATCTCTGG
* * * ** * * * * *
978003 CTTGTGCATTATACCTCTCCGGCCAGCTGAGCGCTCGCACGCTCATTTCATGGGTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC-CGCACGCTCGTTTCGTGGGTTGGCTTAGGC
*
978068 ATACGAAGTTCAT
65 ATACGGAGTTCAT
978081 CCCTAGTCGA
Statistics
Matches: 663, Mismatches: 169, Indels: 116
0.70 0.18 0.12
Matches are distributed among these distances:
157 4 0.01
158 20 0.03
159 383 0.58
160 26 0.04
161 9 0.01
162 5 0.01
163 6 0.01
164 9 0.01
165 73 0.11
166 3 0.00
167 4 0.01
168 1 0.00
170 83 0.13
171 17 0.03
172 1 0.00
173 5 0.01
174 6 0.01
175 2 0.00
176 4 0.01
177 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCAAGGGTTGTGGCAGCAGGACCGACAGCA
CGCAGAGGGGGACCGGGCCGATCTCTGG
Found at i:977898 original size:653 final size:664
Alignment explanation
Indices: 976584--978080 Score: 1825
Period size: 653 Copynumber: 2.3 Consensus size: 664
976574 CCATGTCTAA
* *
976584 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGGATCGGCA
* * *
976649 GCACGCA-GGGGGGATCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGA-CTGACTGAGCA
66 GCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAG-CTGAGCA
* ** *
976712 -TAGACACTTTCGTTTCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
130 CTCG-CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * * *
976776 CGGACCGAGGGTTGTGGTAGCAGGATCGACAGCGGGATCGGCAGCACGCAGAGGGGGACCGTGCT
194 CAGACCAAGGGTTATGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGACCGTGCT
** **
976841 GATCCCTGGCTTACGTATTATGCCTCTCCAACCGACTGAGCGCCCGCACACTCGTTTCATGGGTT
259 GATCCCTAACTTACACATTATGCCTCTCCAACCGACTGAGCGCCCGCACACTCGTTTCATGGGTT
*
976906 GACTTAGGCATACGGGGTTCATCCCAGTCTAAGCATACAAAGTCCATTCCTAGTCTAAGATCGGA
324 GACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAAAGTCCATTCCTAGTCTAAGATCGGA
* * * * * * *
976971 TCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCGTGCAGAGGGACCGAGCAAGTCCCCGACTTG
389 CCAGAACGAGAGTTACGACAGCAAGAT--GCAGCGT-CAGA-GCACC-AGCAAGT--CCGACTTG
* * * * * *
977036 CGCATTCTACCTCTCCGATCGGCTGAGCGTCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAG
447 CGCATTCTACCTCTCCCACCGACTGAGCGTCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAG
* * * **
977101 GGAGCTCATTCCATGTCTAAGCCGCAGCCAGATCGAGGGTTGTGGCAGTCGGACCGACAGCACGG
512 GGAGCTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGATTGTGGCAGTCGGACCAACAGCACAC
* * *
977166 AGAGGGGGACCGGGCCGATCTCTGGCTTGCCCATTATGCCTCTTCGATCGGCTCAGTGATCGTAC
577 AGAGGGGGACCGGGCCGATCTCTGGCTTGCCCATTATGCCTCTTCGATCGGCTCAATGACCGCAC
**
977231 GCTTGTTTCATGGGTTGACTTAT
642 GCTCATTTCATGGGTTGACTTAT
* * * * *
977254 GCATATAGAGTTCATTCCCAGTCTAAGATGGGACCAGACCGAAGGTTGCGGCAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGGATCGGCA
* * *
977319 GCACGCAGGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCAGTTGAGCAC
66 GCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCAC
* * * *
977384 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCCTACGGAGTTCGTTCCATGTCTAAGCCCCAGTCA
131 TCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCA
* * *
977449 GATCAAGGGTTATGGCAGCAGGACCGACAGTGGGATCGATAGCACGCAGAGGGGGA-CG-GACTG
196 GACCAAGGGTTATGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGACCGTG-CTG
* *** * *
977512 ATACCC-AACTTGCACATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
260 AT-CCCTAACTTACACATTATGCCTCTCCAACCGACTGAGCGCCCGCACACTCGTTTCATGGGTT
* * * *
977576 GACTTCGGCATATGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATT-CTCAGTCTAAGATCG
324 GACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACAAAGTCCATTCCT-AGTCTAAGATCG
**
977640 GACCAGAACGAGAGTTACGGTAGCAAGAT-C-G-GT-A-A-CA-C-GC-A-T-CGACTTGCGCAT
387 GACCAGAACGAGAGTTACGACAGCAAGATGCAGCGTCAGAGCACCAGCAAGTCCGACTTGCGCAT
* *
977694 TCTGCCTCTCCCACCGACTGAGTG-CCAGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
452 TCTACCTCTCCCACCGACTGAGCGTCC-GCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
* * *
977758 TTCATTCCATGTCTAAGCCCCAGTCGGA-CTGAGGATTGTGGCAG-CAGGACCAACAGCACACAG
516 CTCATTCCATGTCTAAGCCCCAGCCAGATC-GAGGATTGTGGCAGTC-GGACCAACAGCACACAG
* * * *
977821 AGGGGGATCGGGCCGATCT-TCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAATGCCCGCACG
579 AGGGGGACCGGGCCGATCTCT-GGCTTGCCCATTATGCCTCTTCGATCGGCTCAATGACCGCACG
977885 CTCATTTCATGGGTTGACTTAT
643 CTCATTTCATGGGTTGACTTAT
** * *
977907 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACC-GAACTGAGGGTTGTGGCAGTAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGTGGCAGTAGGATCGGC
* * * * * * * *
977971 AGCACGCAGTGGGGGACCGGGCTGATCCCCAGCTTGTGCATTATACCTCTCCGGCCAGCTGAGCG
65 AGCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCA
* * *
978036 CTCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCAT
130 CTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
978081 CCCTAGTCGA
Statistics
Matches: 710, Mismatches: 105, Indels: 41
0.83 0.12 0.05
Matches are distributed among these distances:
652 6 0.01
653 337 0.47
656 1 0.00
657 1 0.00
658 2 0.00
660 1 0.00
661 1 0.00
663 1 0.00
664 1 0.00
666 2 0.00
667 1 0.00
668 1 0.00
669 1 0.00
670 145 0.20
671 206 0.29
672 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (664 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGGATCGGCA
GCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCAC
TCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCA
GACCAAGGGTTATGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGACCGTGCTGA
TCCCTAACTTACACATTATGCCTCTCCAACCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGA
CTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAAAGTCCATTCCTAGTCTAAGATCGGACC
AGAACGAGAGTTACGACAGCAAGATGCAGCGTCAGAGCACCAGCAAGTCCGACTTGCGCATTCTA
CCTCTCCCACCGACTGAGCGTCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCAT
TCCATGTCTAAGCCCCAGCCAGATCGAGGATTGTGGCAGTCGGACCAACAGCACACAGAGGGGGA
CCGGGCCGATCTCTGGCTTGCCCATTATGCCTCTTCGATCGGCTCAATGACCGCACGCTCATTTC
ATGGGTTGACTTAT
Found at i:978715 original size:159 final size:158
Alignment explanation
Indices: 978229--978911 Score: 505
Period size: 159 Copynumber: 4.3 Consensus size: 158
978219 CCCGTACACC
* * * * * * *
978229 CATTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-CAGCCAGACCGAGG
1 CATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCGGA-CCGGACTGAGG
* * * * * * * **
978293 GTTGTGGCAGCGGGATCGATAGTATGCAGA-GGGGAACC-AGGTCGATCCCCGGCTTGTGCATTA
65 GTTGTGGCAGCAGGATCGACAGCA--CAAAGGGGGGACCGAGCT-GATCCCCGACTTACGCATTA
* * * * ** *
978356 TACCTCTTCG-GTCGGCTCAA-TGCCCAAACGCT
127 TGCCTCTCCGACT-GGCT-AAGCGCCCGCACGTT
* * * * ** * **
978388 CGTTTCGTGGGTTGACTTATGCATA-GAGAGTTCATTGCCA-GTCTAAGATCAGATTGGA-TCGA
1 CATTTCATGGGTTGGCTTAGGCATACGA-AGTTCATT-CCATGTCTAAGCCCGGACCGGACT-GA
* * ** *
978450 GGGTTATGGCAGCAGGATCTACAGCACGTAGGGGGGACCG-GACTGATCCCCGACTTACGCATTC
63 GGGTTGTGGCAGCAGGATCGACAGCACAAAGGGGGGACCGAG-CTGATCCCCGACTTACGCATTA
* * * *
978514 TGCCTCTCC-AGTCGGCTAAGCACCCGTACGCT
127 TGCCTCTCCGACT-GGCTAAGCGCCCGCACGTT
* * *
978546 CGTTTCATGGGTTGGCTTAGGTAAACCG-AGTTCATTCCATGTCTAAGCCCTGG-CCGGACTGAG
1 CATTTCATGGGTTGGCTTAGGCATA-CGAAGTTCATTCCATGTCTAAGCCC-GGACCGGACTGAG
* * * *
978609 GGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGACCGAGCTGATCCCCGACTTACGTATTAT
64 GGTTGTGGCAGCAGGATCGACAGCACAAAG-GGGGGACCGAGCTGATCCCCGACTTACGCATTAT
* * *
978674 GCCTCTCCGACTAGCTCAGCGCCTGCACGTT
128 GCCTCTCCGACTGGCTAAGCGCCCGCACGTT
* * **
978705 CATTTCATGGGTTGACTTAGGCATACGAAGTTTATTCCCA-GTCTAAGATCGGACCGGACTGAGG
1 CATTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCGGACCGGACTGAGG
* * * * * * *
978769 GTTGCGGTAGTAAGATCGACAGCACAAAGGGGGGGACC-AGGTCGATCCTC-AGCTTACGCATTT
65 GTTGTGGCAGCAGGATCGACAGCACAAA-GGGGGGACCGAGCT-GATCCCCGA-CTTACGCATTA
* *
978832 TGCCTCTCCGACCGGCTGAGCGCCCGCACGTT
127 TGCCTCTCCGACTGGCTAAGCGCCCGCACGTT
* *
978864 CATTTCGTGGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
1 CATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
978912 ATACGAAGTT
Statistics
Matches: 417, Mismatches: 83, Indels: 48
0.76 0.15 0.09
Matches are distributed among these distances:
157 7 0.02
158 124 0.30
159 274 0.66
160 12 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
CATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCGGACCGGACTGAGGG
TTGTGGCAGCAGGATCGACAGCACAAAGGGGGGACCGAGCTGATCCCCGACTTACGCATTATGCC
TCTCCGACTGGCTAAGCGCCCGCACGTT
Found at i:978771 original size:317 final size:317
Alignment explanation
Indices: 978229--978911 Score: 689
Period size: 317 Copynumber: 2.1 Consensus size: 317
978219 CCCGTACACC
* * * **
978229 CATTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
1 CATTTCATGGGTTAGCTTAGGCA-AACGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
* * * ** * * **
978294 TTGTGGCAGCGGGATCGATAGTATGCAGAGGGGAACCAGGTCGATCCCCGGCTTGTGCATTATAC
65 TTGTGGCAGCGGGACCGACAGCACACAGAGGGGAACCAGCTCGATCCCCGACTTACGCATTATAC
* * * * * * *
978359 CTCTTCGGTCGGCTCAATGCCCAAACGCTCGTTTCGTGGGTTGACTTATGCATAGAGAGTTCATT
130 CTCTCCGCTCAGCTCAACGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATAGAGAGTTCATT
* ** * * * **
978424 GCCAGTCTAAGATCAGATTGGATCGAGGGTTATGGCAGCAGGATCTACAGCACGTA-GGGGGGAC
195 CCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAAGATCGACAGCACAAAGGGGGGGAC
* *
978488 C-GGACTGATCCCC-GACTTACGCATTCTGCCTCTCC-AGTCGGCTAAGCACCCGTACGCT
260 CAGGAC-GATCCCCAG-CTTACGCATTCTGCCTCTCCGA-CCGGCTAAGCACCCGCACGCT
* * * ** * *
978546 CGTTTCATGGGTTGGCTTAGGTAAACCGAGTTCATTCCATGTCTAAGCCCTGGCCGGACTGAGGG
1 CATTTCATGGGTTAGCTTAGGCAAA-CGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
* * *
978611 TTGTGGCAGCGGGACCGACAGCACACAGAGGGGGACCGAGCT-GATCCCCGACTTACGTATTATG
65 TTGTGGCAGCGGGACCGACAGCACACAGAGGGGAACC-AGCTCGATCCCCGACTTACGCATTATA
* *** * *
978675 CCTCTCCGACT-AGCTCAGCGCCTGCACGTTCATTTCATGGGTTGACTTAGGCATACGA-AGTTT
129 CCTCTCCG-CTCAGCTCAACGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATA-GAGAGTTC
* * * *
978738 ATTCCCAGTCTAAGATCGGACCGGA-CTGAGGGTTGCGGTAGTAAGATCGACAGCACAAAGGGGG
192 ATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTACGGCAGCAAGATCGACAGCACAAAGGGGG
* * * * * *
978802 GGACCAGGTCGATCCTCAGCTTACGCATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGTT
256 GGACCAGGACGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCT
* *
978864 CATTTCGTGGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
1 CATTTCATGGGTTAGCTTAGGCAAACG-AGTTCATTCCATGTCTAAGC
978912 ATACGAAGTT
Statistics
Matches: 296, Mismatches: 60, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
316 2 0.01
317 193 0.65
318 96 0.32
319 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (317 bp):
CATTTCATGGGTTAGCTTAGGCAAACGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
TGTGGCAGCGGGACCGACAGCACACAGAGGGGAACCAGCTCGATCCCCGACTTACGCATTATACC
TCTCCGCTCAGCTCAACGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATAGAGAGTTCATTC
CCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAAGATCGACAGCACAAAGGGGGGGACC
AGGACGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCT
Found at i:978920 original size:26 final size:26
Alignment explanation
Indices: 978884--978936 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
978874 GTTAGCTTAG
978884 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
978910 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
978936 G
1 G
978937 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:979470 original size:26 final size:26
Alignment explanation
Indices: 979434--979486 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
979424 GTTGGCTTAG
979434 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
979460 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
979486 G
1 G
979487 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:980182 original size:26 final size:26
Alignment explanation
Indices: 980152--980204 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
980142 GTTGACTTAG
980152 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
980178 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
980204 G
1 G
980205 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:980644 original size:158 final size:157
Alignment explanation
Indices: 980178--980679 Score: 537
Period size: 158 Copynumber: 3.2 Consensus size: 157
980168 CCCAGTCTAA
* * * *
980178 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCAGTAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGAT
* * * * * * *
980242 AGCACGCAGGAGGGTCTAAGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGT
65 AGCACGCAGG-GGGGCGAGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
* * *
980307 CTGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
980336 GCATAGGGAGTTCATTCCATGTCTAAGCCCA-AGCTAGACCGAGGGTTGTGGCAG-TGAGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGATC-AGACCGAGGGTTGCGGTAGCAG-GATCGA
* * * * * *
980399 TAACACG-TGGAGGGGCAGTAGGTCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCTCAG
64 TAGCACGCAGG-GGGGC-G-AGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGACTGAG
* *
980463 CGCCCGCACACTCGTTTCGTGGGTTGACTTAG
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
980495 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGATCAGATCGAGGGTTGCGGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGAT
* * * * *
980559 AGCACGCAGGGGGGACGGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGATTGAACGC
65 AGCACGCAGGGGGG-CGAGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
*
980624 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
980653 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
980680 CATACGGAGT
Statistics
Matches: 277, Mismatches: 56, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 15 0.05
158 135 0.49
159 118 0.43
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGATA
GCACGCAGGGGGGCGAGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:980682 original size:26 final size:26
Alignment explanation
Indices: 980653--980705 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
980643 GTTGGCTTAG
*
980653 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
980679 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCATATCTAA
980705 G
1 G
980706 ATCGAAACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:981924 original size:26 final size:25
Alignment explanation
Indices: 981890--981941 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
981880 GTTGACTTAG
981890 GCATAGGAGTTCATCCCCAGTCTAA
1 GCATAGGAGTTCATCCCCAGTCTAA
*
981915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATA-GGAGTTCATCCCCAGTCTAA
981941 G
1 G
981942 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATAGGAGTTCATCCCCAGTCTAA
Found at i:988106 original size:26 final size:26
Alignment explanation
Indices: 988070--988122 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
988060 GTTGGCTTAG
*
988070 GCATACGGAGTTCATTCCAT-GTCTAA
1 GCATACCGAGTTCATT-CATAGTCTAA
988096 GCATACCGAGTTCATTCATAGTCTAA
1 GCATACCGAGTTCATTCATAGTCTAA
988122 G
1 G
988123 ATTATGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACCGAGTTCATTCATAGTCTAA
Found at i:988831 original size:26 final size:26
Alignment explanation
Indices: 988794--988846 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
988784 GTTGACTTAG
988794 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
988820 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
988846 G
1 G
988847 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:989173 original size:26 final size:26
Alignment explanation
Indices: 989137--989189 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
989127 GTTGGCTTAG
*
989137 GCATACGGAGTTCCTT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
989163 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
989189 G
1 G
989190 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:989573 original size:26 final size:26
Alignment explanation
Indices: 989543--989595 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
989533 GTTGACTTAG
989543 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
989569 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
989595 G
1 G
989596 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:989878 original size:159 final size:156
Alignment explanation
Indices: 989709--990108 Score: 412
Period size: 157 Copynumber: 2.5 Consensus size: 156
989699 TACACGCCCA
* *
989709 TTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCATACTGAGGGTT
1 TTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAACCAAACTGAGGGTT
** * * * *
989774 GTGGCAGCGGGATC-AGTAGCATGCAGAGGGGGACTGGGCCGATCCCCGGCTTACGCATTATGCC
65 GTGGCAGCAAGATCGA-CAGCACGCAGA-GGGGACTGGGCCGATCCCCAGCTTACGCATTATACC
* * * *
989838 TCTTCGGTAGGCTCAGCGCCCGAATGCTTG
128 TCTCCGGCAGGCTCAGCG-CCGAACGCTCG
* * * *
989868 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAGA--TCAGACCAGATTGAGG
1 TTTCATGGGTTG-CTTAGGCATACGGAGTTCATTCCAT-GTCTAA-ACCCCA-ACCAAACTGAGG
* * * * *
989930 GTTGCGGTAGCAAGATCGACAGCACGCAGAGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTAC
62 GTTGTGGCAGCAAGATCGACAGCACGCAGAGGGGACTGGGCCGATCCCCAGCTTACGCATTATAC
* * * *
989995 CTCTCCGGCCGGTTGAGCGCCGCACGCTCG
127 CTCTCCGGCAGGCTCAGCGCCGAACGCTCG
* * * *
990025 TTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTT
1 TTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAACCAAACTGAGGGTT
* *
990090 GTGGCAGCAGGACCGACAG
65 GTGGCAGCAAGATCGACAG
990109 TGGGATCGAC
Statistics
Matches: 196, Mismatches: 36, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
157 72 0.37
158 52 0.27
159 70 0.36
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
TTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAACCAAACTGAGGGTTG
TGGCAGCAAGATCGACAGCACGCAGAGGGGACTGGGCCGATCCCCAGCTTACGCATTATACCTCT
CCGGCAGGCTCAGCGCCGAACGCTCG
Found at i:990263 original size:26 final size:26
Alignment explanation
Indices: 990227--990279 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
990217 GTTCACTTAG
990227 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
990253 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
990279 G
1 G
990280 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:990615 original size:159 final size:158
Alignment explanation
Indices: 990253--990616 Score: 385
Period size: 159 Copynumber: 2.3 Consensus size: 158
990243 CCCAGTCTAA
* * * *
990253 GCATACGG-AGTTTATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGTGACAGCAGTATCGAT
1 GCATA-GGAAGTTCATTCCCAGTCTAAGATCAGATCAGATTGAGGGTTGTGACAGCAGGACCGAT
* * ** * * *
990317 AGCATGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCTGGCTGAGCGC
65 AGCACGCAGGGGGGACAGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCAGGCTCAGCGC
* *
990382 CCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGAACGCCCGTTTCATGGGTTGACTTAG
* ** * * ** *
990411 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGATCGAGGGTTGTGGCAGTGGGACCGG
1 GCATAGGAAGTTCATTCCCA-GTCTAAG-ATCAGATCAGATTGAGGGTTGTGACAGCAGGACCGA
*
990474 TAGCACGCAGAGGGGGACTAG-GCCGATCCCTGGCTTACGCATTATGCCTCTCCGGCAGGCTCAG
64 TAGCACGCAG-GGGGGAC-AGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCAGGCTCAG
* ** *
990538 CGCCCGAATGCTTGTTTCGTGGGTTGACTTAG
127 CGCCCGAACGCCCGTTTCATGGGTTGACTTAG
* ** *
990570 GCATATGAAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTT
1 GCATAGGAAGTTCATTCCCAGTCTAAGATCAGATCAGATTGAGGGTT
990617 ACGGTAGCAA
Statistics
Matches: 166, Mismatches: 33, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.03
158 51 0.31
159 106 0.64
160 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATAGGAAGTTCATTCCCAGTCTAAGATCAGATCAGATTGAGGGTTGTGACAGCAGGACCGATA
GCACGCAGGGGGGACAGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCAGGCTCAGCGCC
CGAACGCCCGTTTCATGGGTTGACTTAG
Found at i:990637 original size:684 final size:684
Alignment explanation
Indices: 989299--990755 Score: 2037
Period size: 684 Copynumber: 2.1 Consensus size: 684
989289 CGGCCGGCTA
* * *
989299 GCGCATTCTGCCTCTCTGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
1 GCGCATTCTACCTCTCCGGTCGGTTGAGCG-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * * *
989364 CGGAGTTCATTCCATGTCTAAGCCCTAGTCGAACCGAGGGTGATGGCAGTAGGACCGACAGCGGG
65 CGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTGATGGCAGCAGGACCGACAGCGGG
* * * * * ***
989429 ATCGACAGCAGGTAGAAGGGGACCAACTCGATCCCCGTCTTGCACATTATGCCTTTTCGGTTGGC
130 ATCGACAGCACGTAAAAGGGGACCAACTCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGC
* * *
989494 CTCTCTGACTGACTGAGCACTCGCATGCTCATTTCACTGGTTGACTTAGGCATACAGAGTTCATC
195 CTCTCTGACCGACTGAGCACCCGCATGCTCATTTCACTGGTTCACTTAGGCATACAGAGTTCATC
*
989559 CCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAAATCGGACCAAGGGTTGCGATAGC
260 CCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAAATCGGACCAAGGGTTGCGACAGC
* ** * * *
989624 AGTATCGATAGCACACAGGGGGGACCGGGTTGATCCTCGGCTTGCGTATTCTACCTCTCCGGTTG
325 AGTATCGATAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTG
* *
989689 GCTGAGTGCCTACACGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAA
390 GCTGAGCGCCCACACGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAA
* * * *
989754 CCCCAACCATACTGAGGGTTGTGGCAGCGGGATCAGTAGCATGCAGAGGGGGACTGGGCCGATCC
455 CCCCAACCAGACTGAGGGTTGTGGCAGCGGGACCAGTAGCACGCAGAGGGGGACTAGGCCGATCC
* *
989819 CCGGCTTACGCATTATGCCTCTTCGGTAGGCTCAGCGCCCGAATGCTTGTTTCATGGGTTGACTT
520 CCGGCTTACGCATTATGCCTCTCCGGCAGGCTCAGCGCCCGAATGCTTGTTTCATGGGTTGACTT
* *
989884 AGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGATTGAGGGTTGCGGTAGCAAGATCGA
585 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACGGTAGCAAGATCGA
** **
989949 CAGCACGC-AGAGGGGA-CTGGGTCGATCCCCAGCTT
650 CAGCACGCAAG-GGGGATC-AAGTCGATCCCCAAATT
* * *
989984 GCGCATTCTACCTCTCCGGCCGGTTGAGCGCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAT
1 GCGCATTCTACCTCTCCGGTCGGTTGAGCGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
990049 GGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTG-TGGCAGCAGGACCGACAGTGGG
66 GGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGG-TGATGGCAGCAGGACCGACAGCGGG
** *
990113 ATCGACAGCACGTAAAAGGGGATCGGA-TTGATCCCCGACTTGCACATTATGCCTCTCCGACCGG
130 ATCGACAGCACGTAAAAGGGGA-CCAACTCGATCCCCGACTTGCACATTATGCCTCTCCGACCGG
* * **
990177 CCTCTCTGGCCGACTGAGCACCCGCACT-CTTATTT-TGTGGGTTCACTTAGGCATACAGAGTTC
194 CCTCTCTGACCGACTGAGCACCCGCA-TGCTCATTTCACT-GGTTCACTTAGGCATACAGAGTTC
* *** *
990240 ATCCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGTGAC
257 ATCCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAAATCGGACCAAGGGTTGCGAC
** * *
990305 AGCAGTATCGATAGCATGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGG
322 AGCAGTATCGATAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGG
* * *
990370 CTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
387 CTGGCTGAGCGCCCACACGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCT
* ** * *
990435 AAGCCCCAGTCAGA-TCGAGGGTTGTGGCAGTGGGACCGGTAGCACGCAGAGGGGGACTAGGCCG
452 AAACCCCAACCAGACT-GAGGGTTGTGGCAGCGGGACCAGTAGCACGCAGAGGGGGACTAGGCCG
* *
990499 ATCCCTGGCTTACGCATTATGCCTCTCCGGCAGGCTCAGCGCCCGAATGCTTGTTTCGTGGGTTG
516 ATCCCCGGCTTACGCATTATGCCTCTCCGGCAGGCTCAGCGCCCGAATGCTTGTTTCATGGGTTG
* **
990564 ACTTAGGCATATGAAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTACGGTAGCAAGA
581 ACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACGGTAGCAAGA
* *
990629 TCGACAGCACGCAAGGGGGATCAAGTCGATTCCTAAATT
646 TCGACAGCACGCAAGGGGGATCAAGTCGATCCCCAAATT
* * * * * * * *
990668 ACGCATTCTACCTTTTCGATCGGTTAAGCATCCACAAGCTCGTTTCGTGGGTTGGCTTAGGCATA
1 GCGCATTCTACCTCTCCGGTCGGTTGAGC-GCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
*
990733 CAGAGTTCATTCCATGTCTAAGC
65 CGGAGTTCATTCCATGTCTAAGC
990756 ATACGGAGTT
Statistics
Matches: 678, Mismatches: 86, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
683 2 0.00
684 590 0.87
685 86 0.13
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (684 bp):
GCGCATTCTACCTCTCCGGTCGGTTGAGCGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTGATGGCAGCAGGACCGACAGCGGGA
TCGACAGCACGTAAAAGGGGACCAACTCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCC
TCTCTGACCGACTGAGCACCCGCATGCTCATTTCACTGGTTCACTTAGGCATACAGAGTTCATCC
CCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAAATCGGACCAAGGGTTGCGACAGCA
GTATCGATAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGG
CTGAGCGCCCACACGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAAC
CCCAACCAGACTGAGGGTTGTGGCAGCGGGACCAGTAGCACGCAGAGGGGGACTAGGCCGATCCC
CGGCTTACGCATTATGCCTCTCCGGCAGGCTCAGCGCCCGAATGCTTGTTTCATGGGTTGACTTA
GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACGGTAGCAAGATCGAC
AGCACGCAAGGGGGATCAAGTCGATCCCCAAATT
Found at i:990764 original size:26 final size:26
Alignment explanation
Indices: 990728--990780 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
990718 GTTGGCTTAG
990728 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
990754 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
990780 G
1 G
990781 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:991119 original size:26 final size:26
Alignment explanation
Indices: 991083--991135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
991073 GTTGGCTTAG
* **
991083 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
991109 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
991135 G
1 G
991136 ATCTGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:991345 original size:26 final size:26
Alignment explanation
Indices: 991293--991345 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
991283 GTTGACTTAG
* *
991293 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATATAA
* *
991319 GCATACGAAGTTCATTCCCACTATAA
1 GCATACGAAGTTCATCCCCAATATAA
991345 G
1 G
991346 ATTGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATATAA
Found at i:992582 original size:158 final size:158
Alignment explanation
Indices: 992396--992860 Score: 529
Period size: 159 Copynumber: 2.9 Consensus size: 158
992386 CTGACTGGAC
* * * ** *
992396 TGAGGGTTGTAGCAGTAGGATCGGCAGCATGCAGGGGGGACCGGCCCGATCCCCGGCTTGCGCAT
1 TGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCAT
* * * * *
992461 TCTGCCTCTTCGGTCGACTGAGAGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCCTCTTCGATCGGCTCAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
* **
992526 TCATTCCATGGCTAAGCCCCAATCGGAT
131 TCATTCCATGTCTAAGCCCCAATCAAAT
* * * **
992554 TGAGGGTTGTGGCAGCGGGACCGACAGCAAGCAGAGGGGGATTGGGTCGATCCCCGGCTTGTGCA
1 TGAGGGTTGTGGCAGCAGGATCGACAGCATGCAG-GGGGGACCGGGTCGATCCCCGGCTTGTGCA
* * * * * *
992619 TTATGGCTCTTCGATCGGCTCAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAG
65 TTCTGCCTCTTCGATCGGCTCAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
* ** **
992684 TTAATTCCCA-GTCTAAGATCGGATCAAAT
130 TTCATT-CCATGTCTAAGCCCCAATCAAAT
* * * *
992713 CGAGGGTTGTGGCAGCAGGATCGACCGCATGCAGGGGCAGACCGGGTCGATCCTCGGCTTGTGCA
1 TGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGGG-GGACCGGGTCGATCCCCGGCTTGTGCA
* * * * *
992778 TTCTGCCTC-TCTAATCGGTTCAGTGCCCGTACACTCATTTCGTGGGTTGGCTTAGGCATACGGA
65 TTCTGCCTCTTC-GATCGGCTCAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
992842 GTTCATTCCATGTCTAAGC
129 GTTCATTCCATGTCTAAGC
992861 ATATGGAGTT
Statistics
Matches: 250, Mismatches: 52, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
158 36 0.14
159 211 0.84
160 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (158 bp):
TGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCAT
TCTGCCTCTTCGATCGGCTCAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAATCAAAT
Found at i:992869 original size:26 final size:26
Alignment explanation
Indices: 992833--992885 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
992823 GTTGGCTTAG
992833 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
992859 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
992885 G
1 G
992886 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:993243 original size:26 final size:26
Alignment explanation
Indices: 993213--993265 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
993203 GTTGAGTTAG
*
993213 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
993239 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
993265 G
1 G
993266 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:993601 original size:159 final size:159
Alignment explanation
Indices: 993309--993741 Score: 432
Period size: 159 Copynumber: 2.7 Consensus size: 159
993299 TTGTAGCACG
* *
993309 CAGGGGGGATCGGGTCGAT-CCTCGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCA
1 CAGGGGGGACCGGGTCGATCCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCA
* * * * *
993373 CGCCCGTTTCGTGGGTTTGCTTAGGCGTAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGAACT
66 CGCTCGTTTCATGGG-TTGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCCCCAGCCGAACC
* **
993437 GAGGGTTGTGGCAGTGGGACCGACAGAACA
130 GAGGGTTGCGGCAGCCGGACCGACAGAACA
* * * * *
993467 CAGAGGGGGACCGGGTCGATCCCTTG-CTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGTCCGA
1 CAG-GGGGGACCGGGTCGATCCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
* * **** * *
993531 ACGCTCGTTTCATGGGTTGACATAGGCATACGGAATTCATTCCCA-GTCTAAG-ATTGGATCGGA
65 ACGCTCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCATTCCCATGTCTAAGCCCCAG-CCGAA
* * * **
993594 CCGAGGGTTGCGGCAGCCGGATCGATAGCATG
128 CCGAGGGTTGCGGCAGCCGGACCGACAGAACA
* * ** * *
993626 CAGGGGGGACTGGG-CTGGTCCC-CGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGGCCGC
1 CAGGGGGGACCGGGTC-GATCCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
* *
993689 ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CTATGTCTAAGC
65 ACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCCATGTCTAAGC
993742 ATACGGAGTT
Statistics
Matches: 223, Mismatches: 42, Indels: 19
0.79 0.15 0.07
Matches are distributed among these distances:
157 4 0.02
158 96 0.43
159 116 0.52
160 7 0.03
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (159 bp):
CAGGGGGGACCGGGTCGATCCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCA
CGCTCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCCCCAGCCGAACCG
AGGGTTGCGGCAGCCGGACCGACAGAACA
Found at i:993701 original size:158 final size:157
Alignment explanation
Indices: 993239--993730 Score: 492
Period size: 158 Copynumber: 3.1 Consensus size: 157
993229 CCCAGTCTAA
* * * *
993239 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGTCCGAGGGTTGCGGCAGCAGGATTTG-T
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA-TCGAT
* *
993303 AGCACGCAGGGGGGA-TCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCG
65 AGCACGCAGGGGGGACT-GGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* *
993367 CCCGCACGCCCGTTTCGTGGGTTTGCTTAG
129 CCCGCACGCTCGTTTCATGGG-TTGCTTAG
* * * ** * * * ** *
993397 GCGTAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGAACTGAGGGTTGTGGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
993460 CAGAACACAGAGGGGGACCGGGTCGATCCCTTG-CTTGCGCATTATGCCTCTCCGGTCGGCTCAG
64 TAGCACGCAG-GGGGGACTGGGTCGATCCC-CGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* * *
993524 CGTCCGAACGCTCGTTTCATGGGTTGACATAG
127 CGCCCGCACGCTCGTTTCATGGGTTG-CTTAG
* * * *
993556 GCATACGGAATTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCCGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * ** * *
993621 GCATGCAGGGGGGACTGGG-CTGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGG
66 GCACGCAGGGGGGACTGGGTC-GATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
*
993685 CCGCACGCTCATTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTT-GCTTAG
993714 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
993731 TATGTCTAAG
Statistics
Matches: 263, Mismatches: 59, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 8 0.03
158 133 0.51
159 117 0.44
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGCTTAG
Found at i:993764 original size:26 final size:26
Alignment explanation
Indices: 993714--993766 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
993704 GTTGGCTTAG
* *
993714 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
993740 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
993766 G
1 G
993767 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:993875 original size:184 final size:184
Alignment explanation
Indices: 993556--993977 Score: 540
Period size: 184 Copynumber: 2.3 Consensus size: 184
993546 GTTGACATAG
* * * * * *
993556 GCATACGGAATTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCCGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * * * * *
993621 GCATGCAGGGGGGACTGGGCTGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGGC
66 GCAAGCAGGGGGCACTGGGCTGGTCCCCGACTTACGAATTATGCCTCTCCAACCGACTAAACGCC
* *
993686 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAA
131 CGCACGCTCATTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
993740 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * *
993805 GCAAGTAGGGGGCA-TCGGGCTGGTCCCCGGCTTATGAATTATGCCTCTCCAACCGGCTAAACTC
66 GCAAGCAGGGGGCACT-GGGCTGGTCCCCGACTTACGAATTATGCCTCTCCAACCGACTAAACGC
* * *
993869 CCGCACGCTCGTTTCGTGGCTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAA
130 CCGCACGCTCATTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
993924 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAG
993978 TAAGACCAGT
Statistics
Matches: 203, Mismatches: 34, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
183 1 0.00
184 202 1.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
GCAAGCAGGGGGCACTGGGCTGGTCCCCGACTTACGAATTATGCCTCTCCAACCGACTAAACGCC
CGCACGCTCATTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:993936 original size:26 final size:26
Alignment explanation
Indices: 993900--993950 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
993890 TGGCTTAGGT
*
993900 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
993926 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
993951 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:994136 original size:26 final size:26
Alignment explanation
Indices: 994107--994159 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
994097 GTTGACTTAG
*
994107 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGAAGTTCAACCCCAGTCTAA
* **
994133 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAACCCCAGTCTAA
994159 G
1 G
994160 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCAACCCCAGTCTAA
Found at i:994300 original size:894 final size:873
Alignment explanation
Indices: 992365--994465 Score: 2282
Period size: 894 Copynumber: 2.4 Consensus size: 873
992355 AGGCATACAG
* * * *
992365 AGTTTATTCCTAGTCTAAGATCTGACTGGACTGAGGGTTG-TAGCAGTAGGATCGGCAGCATGCA
1 AGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTTGCGA-CAGTAGGATCGGCAGCATGCA
* *
992429 GGGGGGACCGGCCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGAGCCCGCACGC
64 GGGGGGACCGG-CCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCCGCACGC
* * * *
992494 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGGCTAAGCCCCAATCGGATTGAGG
128 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGG
* * *
992559 GTTGTGGCAGCGGGACCGACAGCAA-GCAGAGGGGGATTGGGTCGATCCCCGGCTTGTGCATTAT
193 GTTGTGGCAGTGGGACCGACAG-AACACAGAGGGGGACTGGGTCGATCCCC-GCTTGTGCATTAT
* * * *
992623 GGCTCTTCGATCGGCTCAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAAGTTA
256 GCCTCTCCGGTCGGCTCAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAA-TTC
* * *
992687 ATTCCCAGTCTAAGATCGGATCAAATCGAGGGTTGTGGCAGCAGGATCGACCGCATGCAGGGGCA
320 ATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGCA
* * * * * ** * *
992752 GACCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCTAATCGGTTCAGTGCCCGTACACTCATT
385 GACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGACTCAGCGCCCGCACACTCATT
* * *
992817 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTC
450 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATC
* * * * * *
992882 TAAGATCAGATCGGACTAAGGGTTGCGGCAGTAGGACCAGCAGCAGGATCGGCAGCACGCATGAG
515 TAAGATCAGACCGGACCAAGGGTTGCAGCAGCAGGACCAGCAGCAAGATAGG-AG-ACGCATGAG
* * * * ** * * *
992947 GGACCAGGCCAATCCCTGGCTTACGCATTCTGCCTCTTCAGTCGACTGAGTGCCTGCACGCTGAT
578 GGA-CAGG---ATCCCCGGCTTACGAATTATGCCTCTCCAACCGACTAACTGCCCGCACGCTGAT
* * ** *
993012 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATAGAGGGCTG
639 TTCGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAAGATAGACAGATG
* * * ** **
993077 TGGTAGCAGGACCGACAGTGAGATCGGTAGCACACAGAGGGGGATCAAGCTGATCCTTGGCTTGT
704 GGGTAGCAGGACAGACAGTGAGATCGGGAGCACACAGAGGGGGATCAAGCTGATCCCCGGCTTAC
** *
993142 GCATTATGTCTCTCCGACCGGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
769 GCATTATACCTCTCCGACCGACCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
993207 AGTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGG
834 ACTTAGGCATACGAAGTTCAACCCCAGTCTAAGCATATGA
* * * * * ** * *
993247 AGTTCATTCCCAATCTAAGATCGGACCGGTCCGAGGGTTGCGGCAGCAGGATTTGTAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTTGCGACAGTAGGATCGGCAGCATGCAG
* * * * * *
993312 GGGGGATCGGGTCGAT-CCTCGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGC
65 GGGGGA-CCGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCCGCACGC
* * * *
993376 CCGTTTCGTGGGTTTGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGG
128 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGG
* * *
993441 GTTGTGGCAGTGGGACCGACAGAACACAGAGGGGGACCGGGTCGATCCCTTGCTTGCGCATTATG
193 GTTGTGGCAGTGGGACCGACAGAACACAGAGGGGGACTGGGTCGATCCC-CGCTTGTGCATTATG
* * * *
993506 CCTCTCCGGTCGGCTCAGCGTCCGAACGCTCGTTTCATGGGTTGACATAGGCATACGGAATTCAT
257 CCTCTCCGGTCGGCTCAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAATTCAT
* ** * * *
993571 TCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCCGGATCGATAGCATGCAGGGG-GGA
322 TCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGCAGA
* * * * * *
993635 CTGGG-CTGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGGCCGCACGCTCATTT
387 CCGGGTC-GATCCCCGACTTGCGCATTCTGCCTCTCCAACCGACTCAGCGCCCGCACACTCATTT
*
993699 CATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCATACGGAGTTCATTCCCAATCT
451 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCT
* * * * *
993764 AAGATCGGACCGGACCAAGGGTTGCAGCAGCAGGATCGGCAGCAAG-TAGG-G-GGCAT-CGGG-
516 AAGATCAGACCGGACCAAGGGTTGCAGCAGCAGGACCAGCAGCAAGATAGGAGACGCATGAGGGA
* * *
993824 CTGG-TCCCCGGCTTATGAATTATGCCTCTCCAACCGGCTAAACT-CCCGCACGCTCG-TTTCGT
581 CAGGATCCCCGGCTTACGAATTATGCCTCTCCAACCGACT-AACTGCCCGCACGCT-GATTTCGT
*
993886 GGCTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
644 GGCTTGGCTTAGGCATACGGAGTTCATTCCATG--T---C-T---AAG--C---CCCAG-C-AAG
* *
993951 ATCAGACCAGATCGAGGGTTGCAGCAGTA-AGACCAGTAGCAGGATCGGCGA-CACGCAG-GGGG
693 AT-AGA-CAGAT-G-GGG-T--AGCAGGACAGA-CAGT-G-A-GATCGG-GAGCACACAGAGGGG
* * *
994013 GATCAAGCTGATCCCCGGCTTACGCATTCTACCTCTTCGACCGACCTCTCCGA-CTGGCTGAGTG
746 GATCAAGCTGATCCCCGGCTTACGCATTATACCTCTCCGACCGACCTCTCCGATC-GGCTGAGCG
* *
994077 CCC-TAGCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAACCCCAGTCTAAGCATATGA
810 CCCGCA-CGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAACCCCAGTCTAAGCATATGA
*
994141 AGTTCATTCCCAGTCTAAGATCGAACTGGACCGAAGGTTGCGACAGTAGGATCGGCAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCG-ACTGGACCGAGGGTTGCGACAGTAGGATCGGCAGCATGCAG
* ** *
994206 GGGGGACCAGGCCGATCCCTGGCTTGTGCATTCTGCCTCTTCGACCGATTGAGCGCCCGCACGCC
65 GGGGGACC-GGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCCGCACGCC
* * * * *
994271 TGTTTCATGGGTTGGGTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
129 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGG
* * * * * *
994336 TTGTGGCAGTGGGATCGGC--AACATGCGGATGGGGTCTGGGTCGATCCCCGACTTGTGCATTCT
194 TTGTGGCAGTGGGACCGACAGAACA--CAGAGGGGGACTGGGTCGATCCCCG-CTTGTGCATTAT
* * * * * * *
994399 ACCTTTCCGGCCGACTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
256 GCCTCTCCGGTCGGCTCAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAATTCA
994464 TT
321 TT
994466 ACATGTCTAA
Statistics
Matches: 1004, Mismatches: 170, Indels: 78
0.80 0.14 0.06
Matches are distributed among these distances:
869 73 0.07
870 3 0.00
871 1 0.00
873 3 0.00
874 1 0.00
875 4 0.00
876 4 0.00
878 4 0.00
880 5 0.00
881 152 0.15
882 317 0.32
883 11 0.01
884 1 0.00
885 4 0.00
886 3 0.00
887 2 0.00
888 1 0.00
889 2 0.00
890 1 0.00
891 2 0.00
892 14 0.01
893 6 0.01
894 374 0.37
895 15 0.01
896 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (873 bp):
AGTTCATTCCCAGTCTAAGATCGACTGGACCGAGGGTTGCGACAGTAGGATCGGCAGCATGCAGG
GGGGACCGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCCGCACGCCCG
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTT
GTGGCAGTGGGACCGACAGAACACAGAGGGGGACTGGGTCGATCCCCGCTTGTGCATTATGCCTC
TCCGGTCGGCTCAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCC
AGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGCAGACCGG
GTCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGACTCAGCGCCCGCACACTCATTTCATGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
CAGACCGGACCAAGGGTTGCAGCAGCAGGACCAGCAGCAAGATAGGAGACGCATGAGGGACAGGA
TCCCCGGCTTACGAATTATGCCTCTCCAACCGACTAACTGCCCGCACGCTGATTTCGTGGCTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAAGATAGACAGATGGGGTAGCAGGAC
AGACAGTGAGATCGGGAGCACACAGAGGGGGATCAAGCTGATCCCCGGCTTACGCATTATACCTC
TCCGACCGACCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
GAAGTTCAACCCCAGTCTAAGCATATGA
Found at i:995703 original size:26 final size:26
Alignment explanation
Indices: 995666--995718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
995656 GTTGGCTTAG
*
995666 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
995692 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
995718 G
1 G
995719 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:996249 original size:342 final size:346
Alignment explanation
Indices: 995541--996276 Score: 878
Period size: 342 Copynumber: 2.1 Consensus size: 346
995531 CTAAGATCGG
* * * * * *** * *
995541 ATCGGACCGAGGGTTGCGACAGCAGGATCGATAGCACACA-GGGGGATTAGGTCTG-ACCTCGGC
1 ATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGTACGCAGGGGGGACCGGGTCGGTCCCT-GGC
* * * * * * * *
995604 TTGGGCATTCTGCCTCTCCTG-CCGGTTGAGCATCCACACGCTCGTTTCGTGGGTTGGCTTAGGC
65 TTGCGCAATCTGCCTCTCC-GACAGGCTGTGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
*
995668 ATACGGAGTTCATTCCAAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGACCG
129 ATACGGAGTTCATTCCAAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACTAGACCG
* * * *
995733 AGGGTTACGGCAGCAGGACCAGCAGTAGGATGGGCAGCACGCAGGGGGGACCGGGCCGATCCTCG
194 AGGGTT-----AGCA-G--CAGCAGTAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCG
* * * **
995798 ACTTGCGTATTCTACCTCTCCGATCGACTGAGTGCTAGCACACTCATTTTGTGGGTTGGCTTAGG
251 ACTTGCGTATTCTACCTCTCCGACCGACTGAGTGCCAGCACACCCATTTCATGGGTTGGCTTAGG
995863 CATACGGAGTTCATTCCATGTCTAAACCCCA
316 CATACGGAGTTCATTCCATGTCTAAACCCCA
* * *
995894 GTCGAACCGAGGGTTGCGGTAGCAGGATTGACAGTACGCAGGGGGGACCGGGTCGGTCCCTGGCT
1 ATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGTACGCAGGGGGGACCGGGTCGGTCCCTGGCT
*
995959 TGCGCAATCTGCCTCTCCGACAGGCTGTGCACCCGCACGCTCTTTTCATGGGTTGGCTTAGGCAT
66 TGCGCAATCTGCCTCTCCGACAGGCTGTGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* * *
996024 ACGGAGTTCATTCCATGTCTAAGCATGC-AGAGTTCATTCCCAATCTAAGATTC-GACTGGACCG
131 ACGGAGTTCATTCCAAGTCTAAGCATACGA-AGTTCATTCCCAATCTAAGA-TCAGACTAGACCG
* * * *
996087 AGGGTT-GC-G-A-CAGTAGGATCGATAGCACGCAGGGGGGCCCAGGCCTATCCCCGTCTTGCGT
194 AGGGTTAGCAGCAGCAGTAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGT
* * * *
996148 ATTCTACCTCTTCGGCCGACTGAGTGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGA
259 ATTCTACCTCTCCGACCGACTGAGTGCCAGCACACCCATTTCATGGGTTGGCTTAGGCATACGGA
*
996213 GTTCATTCCATGTCTAAGCCCCA
324 GTTCATTCCATGTCTAAACCCCA
* * *
996236 ATCGGACCGAGGGTTGTGGCAGCGGGATCGACAGTACGCAG
1 ATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGTACGCAG
996277 AGAGGGATCG
Statistics
Matches: 328, Mismatches: 50, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
342 156 0.48
343 1 0.00
346 1 0.00
348 2 0.01
353 34 0.10
354 129 0.39
355 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (346 bp):
ATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGTACGCAGGGGGGACCGGGTCGGTCCCTGGCT
TGCGCAATCTGCCTCTCCGACAGGCTGTGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
ACGGAGTTCATTCCAAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACTAGACCGAG
GGTTAGCAGCAGCAGTAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGTAT
TCTACCTCTCCGACCGACTGAGTGCCAGCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAACCCCA
Found at i:996911 original size:26 final size:26
Alignment explanation
Indices: 996875--996926 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
996865 TGACTTAGGC
*
996875 ATACGGAGTTCATCCCCAATCTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
* *
996901 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
996927 TCGGATCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAATCTAAGA
Found at i:997216 original size:853 final size:836
Alignment explanation
Indices: 995129--999086 Score: 2700
Period size: 854 Copynumber: 4.7 Consensus size: 836
995119 CTCTGGTCGA
* ** * *
995129 CTGAGCATCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATCCCTAGTCTAAGC
1 CTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * **
995194 ATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGAACAAGGGTTGCTCCAGCAGGATCGACAGC
66 ATACGAAGTTCATTCCCAGTCTAAGATC-GA-CGGAACGAGGGTTGCGACAGCAGGATCGACAGC
* * * * *
995259 ATGC-AGGGGGTATCGGGTCGATCCCTGGCTTGCGCATTCAGCCTCTTTGGCCGACTGAGCGCCC
129 ATGCAAGGGGG-ATCAGGTCGATCCCTCGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGTGCCC
**
995323 GCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
193 GCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGATGGA
** * * * * * *
995388 CCGAGGGTTGTGGCAGTAGGACGGGCAGCACGCAGAGGGGGAACGGGCCGATCCCCGGTTTGTAC
258 CCGAGGGTTGTGGCAGCGGGTCCGACAGTACGCAGAGAGGGAACGGGCCGATCCCCGGCTTGTAC
* *
995453 ATTATGCCTCTCCGACTGGCTCAGTGCCCGCACGCTCGTTCTATGGGTTGACTTACGTATACAGA
323 ATTATGCCTCTCCGACTGGCTCAGTGCCCGCACGCTCGTTC-ATGGGTTGACTTAGGCATACAGA
* **
995518 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGATAGCACACA-G
387 GTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCG-CAGCAGGATCGATAGCACGTAGG
* * * * * * * * * *
995582 GGGGATTAGGTCTGACCTCGGCTTGGGCATTCTGCCTCTCCTGCCGGTTGAGCATCCACACGCTC
450 GGGGA-TCGGGCCGTCCTTGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTC
*
995647 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGAAGTTCATTCCCA
514 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG-AGTTCATTCCCA
* * *
995712 GTCTAAGATCAGA-CTAGACCGAGGGTTACGGCAGCAGGACCAGCAGTAGGATGGGCAGCACGCA
578 GTCTAAGATCAGATCGA-ACCGAGGGTTACGGCAGCA-G---AG-A-T-CGA----CAGCACGTA
** * * * * * **
995776 GGGGGGACCGGGCCGATCCTCGACTTGCGTATTCTACCTCTCCGATC-GACTGAGTGCTAGCACA
631 GGGGGGA-CAAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGACCAG-CTGAGCGCCCGCACA
* ** * *
995840 CTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGTCGAACCGAG
694 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGAACCGAG
* * * * * * *
995905 GGTTGCGGTAGCAGGATTGACAGTACGCAGGGGGGACCGGGTCGGTCCCTGGCTTGCGCAATCTG
759 GGTAGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCTGACTTGCACAATATG
995970 CCTCTCCGACAGG
824 CCTCTCCGACAGG
* * * * * *
995983 CTGTGCACCCGCACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAG
1 CTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAG
* * * * *
996047 CATGC-AGAGTTCATTCCCAATCTAAGATTCGACTGGACCGAGGGTTGCGACAGTAGGATCGATA
65 CATACGA-AGTTCATTCCCAGTCTAAGA-TCGAC-GGAACGAGGGTTGCGACAGCAGGATCGACA
* * ** * * * *
996111 GCACGCAGGGGGGCCCAGGCCTATCCC-CGTCTTGCGTATTCTACCTCTTCGGCCGACTGAGTGC
127 GCATGCAAGGGGGATCAGGTCGATCCCTCG-CTTGCGCATTCTGCCTCTTCGGCCGACTGAGTGC
*
996175 CCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATC
191 CCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGAT-
* *
996239 GGACCGAGGGTTGTGGCAGCGGGAT-CGACAGTACGCAGAGAGGGATCGGGCCGATCCTCGGCTT
255 GGACCGAGGGTTGTGGCAGCGGG-TCCGACAGTACGCAGAGAGGGAACGGGCCGATCCCCGGCTT
** * * ** * * * *
996303 ACACATTATGCCTTTTCGACCAGCTCAGCGCCCGCAGGCTCGCTTCGTGGGTTAACTTAGGCATA
319 GTACATTATGCCTCTCCGACTGGCTCAGTGCCCGCACGCTCG-TTCATGGGTTGACTTAGGCATA
* ** * *
996368 CAAAGTTCATTCGTAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGACAGCACG
383 CAGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGC-GCAGCAGGATCGATAGCACG
* * * * * * *
996433 TAGGGGGGACCGGGCCGTCCTTGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGTACA
446 TAGGGGGGATCGGGCCGTCCTTGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACG
** ** * * *
996498 CTTATTTCACGAGTTGCCTTAGGCAGACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
511 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-GAGTTCATTC
996563 CCAGTCTAAGATCAGATCGAACCGAGGGTTACGGCAGCAG-GATCGACAGCACGTA-GGGGGATC
575 CCAGTCTAAGATCAGATCGAACCGAGGGTTACGGCAGCAGAGATCGACAGCACGTAGGGGGGA-C
** * * * *
996626 AAGCTGATCCCCGACTTATGCATTCTGCCTCTCCGA-CAGTTGAGCACCCGCACATTCGTTTCAT
639 AAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCGCCCGCACACTCGTTTCAT
* *
996690 GGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAAGGTTGTGGCA
704 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGAACCG-AGG--GT---A
* * *
996755 GCTGGATCGACAGTGGGATCGACAGCATGCAGAGGGGGACCGGG-CTGAT-CCTCGACTTGTACA
763 GC-GG-TAG-CA---GGATCGACAGCACGCAG-GGGGGACCGGGTC-GATCCCT-GACTTGCACA
* * * *
996818 TTATGGCTCTTCGGCAGG
819 ATATGCCTCTCCGACAGG
* * * * *
996836 TTGAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGA
1 CTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * *
996901 ATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGACAGCAGGATCGACAGC
66 ATACGAAGTTCATTCCCAGTCTAAGATC-GA-CGGAACGAGGGTTGCGACAGCAGGATCGACAGC
* * * * *
996966 ATGCAAGGGGGATCAGATCGATCCCTTGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCTCG
129 ATGCAAGGGGGATCAGGTCGATCCCTCGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGTGCCCG
* *
997031 CACGCCCGTTTCATGGGTT-GCTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGGTGGA
194 CACACCCGTTTCATGGGTTGGC-TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGATGGA
** * * * * * * **
997095 TTGAGGGTTGTGGCAACGGGTCCGATAGTACACAGAAAGGGACCGGGCCGATCCCCAGCTTGTGT
258 CCGAGGGTTGTGGCAGCGGGTCCGACAGTACGCAGAGAGGGAACGGGCCGATCCCCGGCTTGTAC
* * * ** *
997160 ATTATGTCTCTCCGATTGGCTCAATGCCCAAACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
323 ATTATGCCTCTCCGACTGGCTCAGTGCCCGCACGCTCG-TTCATGGGTTGACTTAGGCATACAGA
** * *
997225 GTTCATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTACGGCAGTAGGATCGATAGCACGTAGG
387 GTTCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGC-GCAGCAGGATCGATAGCACGTAGG
* * * * ** *
997290 GGGGATCGGGTCGGTCCCTGGCTTGCGCATTTTGCCTCTCCAACCGGCTGAGTGCCCGCATGCTC
450 GGGGATCGGG-CCGTCCTTGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTC
* *
997355 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGTACGGAGTTCATTCCTA
514 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-GAGTTCATTCCCA
* * * * *
997420 ATCTAAGATCGGATCGGACCGAGGCTTGCGGCAGTAGGACCAGCAACAAGATCGACAGCACGTTA
578 GTCTAAGATCAGATCGAACCGAGGGTTACGGC---A-G--CAG-----AGATCGACAGCACG-TA
* * * *
997485 GGGGGGACAAGCTGATCCCCGGCTCGCACATTCTACCTCTCCGACCAGCTGAGCGCCCGCACGCT
631 GGGGGGACAAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCGCCCGCACACT
** ***** * *
997550 CGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACC-AAG
696 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAATCGAACCGAGG
* * * * ** * * * * * *
997613 G--G-GG-ATC-GGGTTG--ATCAC-CAGCTTGTG--C--AT-TATGCCT--C-T-C-CGAT-CG
760 GTAGCGGTAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTCGATCCCTGACTTGCACAATATG
* *
997659 ACCTCTCCGGTC-GA
824 -CCTCTCC-GACAGG
* * * * * * * *
997673 CTAAGCGCCTGCACGCTCGTTTCGTGGGTTGAATTAAGCATACGGAGTTCATTCCTAG--T--G-
1 CTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * ** *
997733 -T---AAG---------A-TC--AGAT---CGGACCGAGGGTTACGGTAGTAGGATCGACAGCAT
66 ATACGAAGTTCATTCCCAGTCTAAGATCGACGGAACGAGGGTTGCGACAGCAGGATCGACAGCAT
* * ** * * * * * *
997779 GC-AGGGCAGACCAGACCGAT-CCTCGGCTTGCGCATTTTACCTCTTCAGCCGGCTAAGCGCCCG
131 GCAAGGG-GGATCAGGTCGATCCCTC-GCTTGCGCATTCTGCCTCTTCGGCCGACTGAGTGCCCG
* ** * * * * *
997842 TATGCCCGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCTAG-CGGAA
194 CACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGATGG-A
* * * * * * * * ** ** * * **
997906 CTGAGGGTTATGGCAACGGGACCGACAGCACACAGAGGGGGATCGAACTTATCCTCAGCTTGCGC
258 CCGAGGGTTGTGGCAGCGGGTCCGACAGTACGCAGAGAGGGAACGGGCCGATCCCCGGCTTGTAC
* ** ** * * * ** * * *
997971 ATTATGCCTCTCCG-GTCGATTCAGCACCTGAACGCTCATTTTGTGGGTTGGCTTTGGCATACGG
323 ATTATGCCTCTCCGACT-GGCTCAGTGCCCGCACGCTC-GTTCATGGGTTGACTTAGGCATACAG
* * ** * ** *
998035 AGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTAAGACAGTAGGATTTATAGCACGCAT
386 AGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCG-CAGCAGGATCGATAGCACGTA-
* * ** * * ** * *
998100 GGGGGGATTGGGTCGGTCCCCGGCTTGCGCATTCTGTCTCTCC-GACCGGTTGAGTGCCCGTACA
448 GGGGGGATCGGG-CCGTCCTTGGCTTGCGCATTCTGCCTCTCCAG-CCGGCTGAGCACCCGCACG
* * *
998164 CTCATTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
511 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-GAGTTCATTC
* *
998229 TCAGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGACCAGCAGTAGGATC-AGCAGCAC
575 CCAGTCTAAGATCAGATCGAACCGAGGGTT-----A-C-GG--CAGCAG-A-GATCGA-CAGCAC
* ** ** * * * * * * * *
998293 GTAAGGAGGGACCGGGCTGATCCCCGGTTTGTGCGTTCTGCCTCTTCGATCGGCTGAGTGCCCGT
628 GT-AGGGGGGA-CAAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCGCCCGC
* * * *
998358 ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAA-CCAGAC
691 ACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGA-AC
* * * * * * *
998422 CGAGGGTTGTGGCAGCAAACCAACAGCGGAATCGACAGCACGTAAAGGGGGATCGGGTTGATCCC
755 CGAGGGTAGCGGTAG--------CA--GG-ATCGACAGCACG-CAGGGGGGACCGGGTCGATCCC
* * ** * * * **
998487 -CAGCTTGCGCCTTATGCCCCTCTGGCCTG
808 TGA-CTTGCACAATATGCCTCTCCGACAGG
* ** * * * *
998516 CTGAGCGCCCGTGCGCTC-TATTTGTGGGTTGACTTAGACATACGGAGTTCATCCCTAGTCTAAG
1 CTGAGCACCCGCACACTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * * * * *
998580 CATACGGATTTTATTCCCAGTCTAAGATCGAACCTGACCGAGGGTTGCGATAGCAGGATCAACAG
65 CATACGAAGTTCATTCCCAGTCTAAGATCG-A-CGGAACGAGGGTTGCGACAGCAGGATCGACAG
* * * * * * ** * *
998645 CATGCAGGGGGGACCGGGTCGATCCC-CGGCTTACGCATTCTACCTCTCCGGTTGGCTGAGCGCC
128 CATGCAAGGGGGATCAGGTCGATCCCTC-GCTTGCGCATTCTGCCTCTTCGGCCGACTGAGTGCC
* * * * ** *
998709 CGCACGCTCGCTTCTTGGGTTACCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
192 CGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGATGG
* * * * * * * * **
998774 ATCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCG
257 ACCGAGGGTTGTGGCAGCGGGTCCGACAGTACGCAGAGAGGGAACGGGCCGATCCCCGGCTTGTA
998839 CATTATG-C-CT-C-AC--G---A--------ACGCTCGTTTCATGGGTTGACTTAGGCATATC-
322 CATTATGCCTCTCCGACTGGCTCAGTGCCCGCACGCTCG-TTCATGGGTTGACTTAGGCATA-CA
* * * * * * * *
998886 GAGTTTATACCCAGTCTAAGATCGGACCGGA-TGAGGGTTGTGGCAGCAGGATCGACAACATGCA
385 GAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTG-CGCAGCAGGATCGATAGCACGTA
* * ** * * * *** *
998950 GGGGGGACCAGGTCAATCCTCGGCTTGCGCGTTCTGCCTCTCC-GACTGGCTG-GGGGCTGCACG
448 GGGGGGATC-GGGCCGTCCTTGGCTTGCGCATTCTGCCTCTCCAG-CCGGCTGAGCACCCGCACG
999013 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
511 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-GAGTTCATTC
*
999078 CCAATCTAA
575 CCAGTCTAA
999087 CATTTTGAGC
Statistics
Matches: 2452, Mismatches: 499, Indels: 311
0.75 0.15 0.10
Matches are distributed among these distances:
810 11 0.00
811 278 0.11
812 162 0.07
813 88 0.04
814 3 0.00
815 3 0.00
816 5 0.00
817 3 0.00
818 5 0.00
819 3 0.00
821 1 0.00
826 1 0.00
828 3 0.00
829 2 0.00
830 2 0.00
831 1 0.00
832 4 0.00
833 3 0.00
834 1 0.00
835 2 0.00
836 1 0.00
837 59 0.02
838 6 0.00
839 1 0.00
840 68 0.03
841 40 0.02
842 14 0.01
843 59 0.02
844 1 0.00
845 2 0.00
846 4 0.00
847 9 0.00
848 6 0.00
849 78 0.03
850 43 0.02
851 24 0.01
852 77 0.03
853 408 0.17
854 621 0.25
855 20 0.01
857 3 0.00
858 1 0.00
859 1 0.00
860 4 0.00
861 1 0.00
862 2 0.00
864 5 0.00
866 16 0.01
867 35 0.01
868 71 0.03
869 184 0.08
870 7 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (836 bp):
CTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGAAGTTCATTCCCAGTCTAAGATCGACGGAACGAGGGTTGCGACAGCAGGATCGACAGCAT
GCAAGGGGGATCAGGTCGATCCCTCGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGTGCCCGCA
CACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGATGGACCG
AGGGTTGTGGCAGCGGGTCCGACAGTACGCAGAGAGGGAACGGGCCGATCCCCGGCTTGTACATT
ATGCCTCTCCGACTGGCTCAGTGCCCGCACGCTCGTTCATGGGTTGACTTAGGCATACAGAGTTC
ATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGCAGCAGGATCGATAGCACGTAGGGGGGAT
CGGGCCGTCCTTGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTCGTTTCGT
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAGTTCATTCCCAGTCTAAGA
TCAGATCGAACCGAGGGTTACGGCAGCAGAGATCGACAGCACGTAGGGGGGACAAGCTGATCCCC
GACTTGCGCATTCTACCTCTCCGACCAGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGAACCGAGGGTAGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCTGACTTGCACAATATGCCTCTCCGACAGG
Done.