Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 9 of 93
Found at i:997424 original size:26 final size:26
Alignment explanation
Indices: 997377--997426 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
997367 GGCTTAGGCA
*
997377 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGTTCATTCCATATCTAAGCG
997403 TACGGAGTTCATTCC-TAATCTAAG
1 TACGGAGTTCATTCCAT-ATCTAAG
997427 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCG
Found at i:998601 original size:26 final size:26
Alignment explanation
Indices: 998554--998605 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
998544 TTGACTTAGA
998554 CATACGGAGTTCATCCCTAGTCTAAG
1 CATACGGAGTTCATCCCTAGTCTAAG
* *
998580 CATACGGATTTTATTCCC-AGTCTAAG
1 CATACGGAGTTCA-TCCCTAGTCTAAG
998606 ATCGAACCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATCCCTAGTCTAAG
Found at i:999085 original size:26 final size:26
Alignment explanation
Indices: 999035--999086 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
999025 GTTGGCTTAG
*
999035 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
999061 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
999087 CATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:1000093 original size:159 final size:158
Alignment explanation
Indices: 999772--1000107 Score: 392
Period size: 159 Copynumber: 2.1 Consensus size: 158
999762 CTAAGCATAT
* * * *
999772 GAGTTCATTCCCAGTCTAAGAT--CAGACCGGATCGAGGGTTACGGCAGCAGGATCGATAGCACG
1 GAGTTCATTCCCAGTCTAA-TTCCCAG-TCGGATCGAGGGTTACGGCAACAGGATCGACAGCACG
* * * * * * * *
999835 CAGGGGGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCTGCTGAGTACCCGCAC
64 CAGGGGGGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGAAC
* **
999900 GCCCATTTCGGTGGTTGGCTTACGCATAGG
129 GCCCATTTCGGTGGTTGACTTACGCATACA
* *
999930 GAGTTCATT-CCATGTCTAATTCCCAGTCGGATCGAGGGTTATGGCAACGGGATCGACAGCACGC
1 GAGTTCATTCCCA-GTCTAATTCCCAGTCGGATCGAGGGTTACGGCAACAGGATCGACAGCACGC
* * *
999994 AGAGGGGGATTGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCTAAC
65 AG-GGGGGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGAAC
* * *
1000059 GCTCATTTC-GTGCTTTGACTTAGGCATACA
129 GCCCATTTCGGTG-GTTGACTTACGCATACA
1000089 GAGTTCATTCCCAGTCTAA
1 GAGTTCATTCCCAGTCTAA
1000108 GATCGATCAG
Statistics
Matches: 149, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
157 4 0.03
158 53 0.36
159 89 0.60
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAATTCCCAGTCGGATCGAGGGTTACGGCAACAGGATCGACAGCACGCA
GGGGGGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGAACGC
CCATTTCGGTGGTTGACTTACGCATACA
Found at i:1000203 original size:157 final size:155
Alignment explanation
Indices: 999766--1000265 Score: 497
Period size: 157 Copynumber: 3.2 Consensus size: 155
999756 CCCATTCTAA
* *
999766 GCATATGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGATA
1 GCATACGAGTTCATT-CCATGTCTAAGATC-GATCGGATCGAGGGTTACGGCAGCAGGATCGATA
* * * * *
999830 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCTGCTGAGTACC
64 GCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACC
** * *
999895 CGCACGCCCATTTCGGTGGTTGGCTTAC
129 CTAACGCTCATTTC-GTGGTTGGCTTAG
* * * * * * *
999923 GCATAGGGAGTTCATTCCATGTCTAA-TTCCCAGTCGGATCGAGGGTTATGGCAACGGGATCGAC
1 GCATA-CGAGTTCATTCCATGTCTAAGAT-CGA-TCGGATCGAGGGTTACGGCAGCAGGATCGAT
* * * *
999987 AGCACGCAGAGGGGGATTGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCA
63 AGCACGCAG-GGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCA
* *
1000052 CCCTAACGCTCATTTCGTGCTTTGACTTAG
127 CCCTAACGCTCATTTCGTG-GTTGGCTTAG
* * *
1000082 GCATACAGAGTTCATTCCCA-GTCTAAGATCGATCAGA-CTAAGGGTTACGGTAGCAGGATCGAT
1 GCATAC-GAGTTCATT-CCATGTCTAAGATCGATCGGATC-GAGGGTTACGGCAGCAGGATCGAT
* * * * * * * *
1000145 AGCATGTAGGGGGGATCAGGCCAATCCCTGACTTGTGCATTTTGCCTCTCCGGTCGGCTGAGCA-
63 AGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCAC
* *
1000209 CCTGTACGCTCGTTTCGTGGGTTGGCTTAG
128 CCT-AACGCTCATTTCGT-GGTTGGCTTAG
*
1000239 GCATACGAAATTCATTCCATGTCTAAG
1 GCATACG-AGTTCATTCCATGTCTAAG
1000266 CATACAGAGT
Statistics
Matches: 279, Mismatches: 50, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
156 7 0.03
157 96 0.34
158 84 0.30
159 88 0.32
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (155 bp):
GCATACGAGTTCATTCCATGTCTAAGATCGATCGGATCGAGGGTTACGGCAGCAGGATCGATAGC
ACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCT
AACGCTCATTTCGTGGTTGGCTTAG
Found at i:1000268 original size:26 final size:26
Alignment explanation
Indices: 1000239--1000291 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
1000229 GTTGGCTTAG
1000239 GCATAC-GAAATTCATT-CCATGTCTAA
1 GCATACAG-AATTCATTCCCA-GTCTAA
*
1000265 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
1000291 G
1 G
1000292 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:1001120 original size:158 final size:157
Alignment explanation
Indices: 1000631--1001132 Score: 488
Period size: 158 Copynumber: 3.2 Consensus size: 157
1000621 TCCAGTCTAA
* * * * * *
1000631 GCATACAGAGTTCATTCCCA-ATCTAAGATCGGATTGGACCGAGGGTTGCGACAGCAGGATCTAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACT-GACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * * * *
1000695 AGCACGTATGAGGGATCAAGTCGATCCTCGGCTTACGTATTCTGCCTCTCCGGCCGGTTGAGCGC
64 AGCACGCAGGGGGGATCAGGCCGATCCTCGGCTTACGTATTCTGCCTCTTCGGCCGGCTAAGCGC
* *
1000760 CCGCACGCCCGTTTTGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
1000789 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGAACCGATGGTTGTGGCAGCAAGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTG-ACCGAGGGTTGCGACAGCAGGATCGAC
* * ** * * * *
1000853 AGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTACACATTATGCCTCTTCGGCCAGCTTAGTG
64 AGCACGCAG-GGGGGATCAGGCCGATCCTCGGCTTACGTATTCTGCCTCTTCGGCCGGCTAAGCG
* * * * * *
1000918 CCTGCATGCTCATTTCATGGGTTGACTTAT
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
1000948 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTAGACCGAGGGTTGCGATAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACT-GACCGAGGGTTGCGACAGCAGGATCGAC
* ** * * * *
1001012 AGCACGCAGGGGGGATCAGGCCGATCCCCAACTTGCGTACTCTACCTCTTCGGTCGGCTAAGCGC
64 AGCACGCAGGGGGGATCAGGCCGATCCTCGGCTTACGTATTCTGCCTCTTCGGCCGGCTAAGCGC
*
1001077 CCGCACGTTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
1001106 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
1001133 CATACGGAGT
Statistics
Matches: 267, Mismatches: 69, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 7 0.03
158 137 0.51
159 119 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGCAGGGGGGATCAGGCCGATCCTCGGCTTACGTATTCTGCCTCTTCGGCCGGCTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:1001142 original size:26 final size:26
Alignment explanation
Indices: 1001106--1001158 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1001096 GTTGGCTTAG
1001106 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
1001132 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1001158 G
1 G
1001159 ATCGACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1002624 original size:26 final size:26
Alignment explanation
Indices: 1002588--1002638 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1002578 TTGACTTAGC
*
1002588 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
* *
1002614 CATATGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATCCCCAATCTAA
1002639 AATTGGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAG
Found at i:1002974 original size:159 final size:159
Alignment explanation
Indices: 1002684--1002976 Score: 383
Period size: 159 Copynumber: 1.8 Consensus size: 159
1002674 GACAGCACGC
* * * * * * * * *
1002684 AGGGGGACCGGGCCAATCCTCGGCTTACGCATTCTGCCTCTCCTATCGACTGAGTGCCCGTACGC
1 AGGGGGACCGAGCCAATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGCGACCGTACGC
* * * **
1002749 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACGGAGG
66 CCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGG
1002814 GTTGTGGCAGTGGGACCGACAGCACGATG
131 GTTGTGGCAGTGGGACCGACAGCACGATG
* * *
1002843 AGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGACCGTACGC
1 AGGGGGACCGAGCCAATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGCGACCGTACGC
* *
1002908 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAG-ATCAGACCGGACCAA
66 CCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CATGTCTAAGCACCAG-CCGGACCAA
1002971 GGGTTG
129 GGGTTG
1002977 CAGTAGCACG
Statistics
Matches: 113, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
158 3 0.03
159 108 0.96
160 2 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
AGGGGGACCGAGCCAATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGCGACCGTACGC
CCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGG
GTTGTGGCAGTGGGACCGACAGCACGATG
Found at i:1003117 original size:26 final size:26
Alignment explanation
Indices: 1003087--1003139 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1003077 GTTGGCTTAG
*
1003087 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
*
1003113 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
1003139 G
1 G
1003140 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:1003659 original size:356 final size:354
Alignment explanation
Indices: 1002830--1003762 Score: 965
Period size: 356 Copynumber: 2.6 Consensus size: 354
1002820 GCAGTGGGAC
* * * * * *
1002830 CGACAGCACGATGAGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTC
1 CGACAGCACG-TAAGGGGGATCGAGCCGAT-CCCGGCTTGCACATTCTGCCTCTCCGACCGGCTA
* * **
1002895 AGCGACCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAGATC
64 AGCG-CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCC
** * *
1002959 AGACCGGACCAAGGGTTGCAGTAGCACGATCGATAGCATGCAG-GGGGGATCGGGCTGATCCCTG
127 AG--CGGACCAAGGGTTGTGGTAGCAAGATCGATAGCACGCAGAGGGGGATC-GGCTGATCCCTG
1003023 GCTTACGC---ATG-----C--T-GG-CTCTCCGCCAAGCTGAGCGCCCGCACGCTCGTTTCATG
189 GCTTACGCATTATGCCTTTCGGTCGGCCTCTCCGCCAAGCTGAGCGCCCGCACGCTCGTTTCATG
* * * * * *
1003076 GGTTGGCTTAGGCATACAGAGTTCATTCCTTGTCTAAGCATATAGAGTTCATTCCTAGTCTAAGA
254 GGTTGACTTAGGCATACAAAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
* *
1003141 TCAGACTGGACCGCGGGTTGCGACACCAGGACTAGTAGCAGGAT
319 TCAGACCGGACCGAGGGTT-CG--A-CA-G---AGTAGCAGGAT
* * * * * *
1003185 CGACAGGACGCAGGGAGGGATTGAGCCGATCGCCGGCTTGCACATTCTGCCTCCCCGACCGGCTG
1 CGACAGCACGTAAGG-GGGATCGAGCCGATC-CCGGCTTGCACATTCTGCCTCTCCGACCGGCTA
* * * *
1003250 AGCACCCGCACGCTCGTTTTGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGGCCC
64 AGC-GCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA-GCCC
1003315 AGTCGGACCAAGGGTTGTGGTAGCAAGATCGATAGCACGCAGAGGGGGATCGGCTTGATCCCTGG
127 AG-CGGACCAAGGGTTGTGGTAGCAAGATCGATAGCACGCAGAGGGGGATCGGC-TGATCCCTGG
* * * * *
1003380 CTTACGCATTATGCCTATTCGGTCGGCCTCTCCGATCGA-CTGAGTGCCCGTACGCTCGTTTCGT
190 CTTACGCATTATGCCT-TTCGGTCGGCCTCTCCG-CCAAGCTGAGCGCCCGCACGCTCGTTTCAT
*
1003444 GGGTTGACTTAGGCATACAAAGTTCATCCCCAT-TCTAAGCATACGGAGTTCATTCCCAGTCTAA
253 GGGTTGACTTAGGCATACAAAGTTCAT-CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
**
1003508 GATTGGACCGGACCGAGGGTT-G-C-G-GTAGCAGGAT
317 GATCAGACCGGACCGAGGGTTCGACAGAGTAGCAGGAT
* * *
1003542 CGGCAGCACGTAAGGGGGATCGAGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGACTAA
1 CGACAGCACGTAAGGGGGATCGAGCCGATCCC-GGCTTGCACATTCTGCCTCTCCGACCGGCTAA
* *
1003607 GCGCCTGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTA
65 GCGCC-GTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-A
* * * * *
1003672 GCTGGACCGAGGGTTGTGGCAGCGAGACCTGCA-A-CACGCAGAGGGGGACCGAGCTGATCCCTG
128 GC-GGACCAAGGGTTGTGGTAGCAAGATC-G-ATAGCACGCAGAGGGGGATCG-GCTGATCCCTG
*
1003735 GCTTGCGCATTATGCCTCTTCGGTCGGC
189 GCTTACGCATTATGCCT-TTCGGTCGGC
1003763 TCAGTGCCCG
Statistics
Matches: 487, Mismatches: 62, Indels: 57
0.80 0.10 0.09
Matches are distributed among these distances:
354 5 0.01
355 146 0.30
356 196 0.40
357 25 0.05
358 1 0.00
359 3 0.01
361 1 0.00
363 1 0.00
365 1 0.00
367 2 0.00
368 2 0.00
369 99 0.20
370 5 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (354 bp):
CGACAGCACGTAAGGGGGATCGAGCCGATCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAG
CGCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCG
GACCAAGGGTTGTGGTAGCAAGATCGATAGCACGCAGAGGGGGATCGGCTGATCCCTGGCTTACG
CATTATGCCTTTCGGTCGGCCTCTCCGCCAAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
TTAGGCATACAAAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
GGACCGAGGGTTCGACAGAGTAGCAGGAT
Found at i:1003961 original size:158 final size:156
Alignment explanation
Indices: 1003479--1003983 Score: 514
Period size: 158 Copynumber: 3.2 Consensus size: 156
1003469 ATCCCCATTC
* ** * *
1003479 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATC-
* * * * * * *
1003544 GCAGCACGTAAGGGGGATCGAGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGACTAAGC
65 GAAGCACGTAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGT
*
1003609 GCCTGTACGCCCGTTTCGTGGGTTGGCT
130 GCC-GTACGCTCGTTTCGTGGGTTGGCT
* * * ** * * * *
1003637 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CTGGACCGAGGGTTGTGGCAGC-GAGAC
1 TAAGCATACGGAGTTCATTCCAAGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAACAG-GAT
* * * *
1003700 CTGCAA-CACGCAGAGGGGGACCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCT
64 C-G-AAGCACGTAG-GGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCT
* * *
1003764 CAGTGCCCGTACGCTTGTTTCGTGGGTTGACT
126 AAGTG-CCGTACGCTCGTTTCGTGGGTTGGCT
* * *
1003796 TATGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAATAGGATCG
1 TAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCG
* * * *
1003861 ATAGCACGTAGGGGGGGCCG-GTCCGATCCCTAGCTTGCGCAATCTGCCTCTCCGGTCGGTTAAG
66 A-AGCACGTAGGGGGGACCGAG-CCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAG
* * * *
1003925 TGACCGCACGCTCATTTCTTAGGTTGGCT
129 TG-CCGTACGCTCGTTTCGTGGGTTGGCT
*
1003954 TAAGCATACGGAGTTCATTCCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCAAGTCTAAG
1003984 GATACGGAGT
Statistics
Matches: 280, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 151 0.54
159 123 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
TAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCG
AAGCACGTAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGTG
CCGTACGCTCGTTTCGTGGGTTGGCT
Found at i:1004705 original size:26 final size:26
Alignment explanation
Indices: 1004669--1004721 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1004659 GTTGACTTAG
*
1004669 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
1004695 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1004721 G
1 G
1004722 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1005345 original size:159 final size:158
Alignment explanation
Indices: 1005047--1005429 Score: 455
Period size: 159 Copynumber: 2.4 Consensus size: 158
1005037 ATCCCCAATC
* ** * * ** *
1005047 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGACCGAGGGTTACGGCAGCAGGATC
1 TAAGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGATC
* * * *
1005111 GACAGCATGCAGGGGGGATCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAG
65 GACAGCACGCAAGGGGGATCGAGCCAATCCCCGACTTACGCATTCTGCCTCTCCGGCCGACTGAG
*** *
1005176 CACCCACACGCTTGTTTCGTGGGTTTTGCT
130 CACCCACACGCCCATTTCGTGGG-TTGGCT
* *
1005206 TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGTAGTAGGATCG
1 TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGATCG
* * * **
1005271 ACAGCACGCAAGGGGGA-CTGGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGCCGGTTGAG
66 ACAGCACGCAAGGGGGATC-GAGCCAATCCCCGACTTACGCATTCTGCCTCTCCGGCCGACTGAG
* * *
1005335 CTCCCGCACGCCCATTTTGTGGGTTGGCT
130 CACCCACACGCCCATTTCGTGGGTTGGCT
* * * *
1005364 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAACGAGGGTTGTGGCAGTCGGATCG
1 TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGATCG
1005429 A
66 A
1005430 GGGTTGTGGC
Statistics
Matches: 190, Mismatches: 32, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
158 69 0.36
159 121 0.64
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGATCG
ACAGCACGCAAGGGGGATCGAGCCAATCCCCGACTTACGCATTCTGCCTCTCCGGCCGACTGAGC
ACCCACACGCCCATTTCGTGGGTTGGCT
Found at i:1005430 original size:21 final size:21
Alignment explanation
Indices: 1005401--1005441 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1005391 AAGCCCCAGC
1005401 CGGAACGAGGGTTGTGGCAGT
1 CGGAACGAGGGTTGTGGCAGT
*
1005422 CGGATCGAGGGTTGTGGCAG
1 CGGAACGAGGGTTGTGGCAG
1005442 CGGGACCGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.15, G:0.49, T:0.20
Consensus pattern (21 bp):
CGGAACGAGGGTTGTGGCAGT
Found at i:1005573 original size:180 final size:179
Alignment explanation
Indices: 1005239--1005573 Score: 386
Period size: 180 Copynumber: 1.9 Consensus size: 179
1005229 GTCTAAGCCC
* * * * * *
1005239 CAGTCGGACCAAGGGTTGTGGTAGTAGGATCGACAGCACGCAAGGGGGACTGGGCCGATCCCTGA
1 CAGTCGGACCAAGGGTTGTGGCAGCAGGACCGACAACACGCAAGGGGGACCGGGCCGATCCCCGA
* * * * * * **
1005304 CTTACGCATTCTGCCTCTCCGGCCGGTTGAGCTCCCGCACGCCCATTTTGTGGGTTGGCTTAGGC
66 CTTACGCATTATGCCTCTCCGACCGGCTCAACACCCGCACGCCCATTTTGTGGGTTCACTTAGGC
* * *
1005369 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAACGAGGGTTGTGG
131 ATACGGAGTTAATTCCAAGTCTAAGCCCCAGCCGGAACGAGGGTTGTGG
* * * *
1005418 CAGTCGGATCGAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACCGGGCTGATCCCCG
1 CAGTCGGACCAAGGGTTGTGGCAGCAGGACCGACAACACGCA-AGGGGGACCGGGCCGATCCCCG
* ** * * *
1005483 GCTTGTGCATTATGCCTCTTCGACCGGCTCAACACCCGTACGCTCC-TTTTGTGGGTTCACTTAT
65 ACTTACGCATTATGCCTCTCCGACCGGCTCAACACCCGCACGC-CCATTTTGTGGGTTCACTTAG
1005547 GCATACGGAGTTAATT-CAGAGTCTAAG
129 GCATACGGAGTTAATTCCA-AGTCTAAG
1005574 ATCGGACCCT
Statistics
Matches: 126, Mismatches: 27, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
179 37 0.29
180 87 0.69
181 2 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (179 bp):
CAGTCGGACCAAGGGTTGTGGCAGCAGGACCGACAACACGCAAGGGGGACCGGGCCGATCCCCGA
CTTACGCATTATGCCTCTCCGACCGGCTCAACACCCGCACGCCCATTTTGTGGGTTCACTTAGGC
ATACGGAGTTAATTCCAAGTCTAAGCCCCAGCCGGAACGAGGGTTGTGG
Found at i:1005699 original size:26 final size:26
Alignment explanation
Indices: 1005649--1005701 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1005639 GTTGGCTTAG
**
1005649 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1005675 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1005701 G
1 G
1005702 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1006390 original size:26 final size:26
Alignment explanation
Indices: 1006360--1006412 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1006350 GTTGACTTAG
*
1006360 GCATACGGAGTTCATCCCCAATCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
* *
1006386 GCATAAGGAGTTTATTCCCAATCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
1006412 G
1 G
1006413 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAATCTAA
Found at i:1007026 original size:158 final size:158
Alignment explanation
Indices: 1006775--1007232 Score: 472
Period size: 158 Copynumber: 2.9 Consensus size: 158
1006765 AAGATCGGAT
* * * * *
1006775 CGGACCGAGGGTTACGGTAGCAGGATCGATAGCACGTAGGGGGGATCGAGCCGAT-CCTCGGCTT
1 CGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCT-GGCTT
* * *
1006839 GCGCATTCTGCCTCTCCGGCCGACTGAGCACCCACACACCTATTTCGTGGGTTAGCTTAAGCATA
65 ACGCATTCTGCCTCTCCGACCGACTGAGCACCCACACACCCATTTCGTGGGTTAGCTTAAGCATA
1006904 GGGAGTTCATTCCATGTCTAAGCCCCAGC
130 GGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
1006933 CGGACCGAGGGTTATGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCTGGCTTA
1 CGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTA
* * * ** * * * * * *
1006998 TGTATTCTGCCTCTCCGACTGGTTGAGCACCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAG
66 CGCATTCTGCCTCTCCGACCGACTGAGCACCCACACACCCATTTCGTGGGTTAGCTTAAGCATAG
*
1007063 GGAGTTCATTCCATGTCTAAGCCCCAGT
131 GGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * *
1007091 CGAACGGAGGGTTGTGGTAGCGGGACCGACAACACGCAGAGGGGGACCGGGCCGATCCCCGGCTT
1 CGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTT
* * * ** * * * * * * *
1007156 GCGCATTATACCTCTTTGATCGGCTCAACACCCATACGCTCC-TTTCGTGGGTTCA-CTTATGCA
65 ACGCATTCTGCCTCTCCGACCGACTGAGCACCCACACAC-CCATTTCGTGGGTT-AGCTTAAGCA
*
1007219 TACGGAGTTCATTC
128 TAGGGAGTTCATTC
1007233 AGAGTCTAAG
Statistics
Matches: 245, Mismatches: 51, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
158 162 0.66
159 81 0.33
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTA
CGCATTCTGCCTCTCCGACCGACTGAGCACCCACACACCCATTTCGTGGGTTAGCTTAAGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGC
Found at i:1007407 original size:26 final size:26
Alignment explanation
Indices: 1007357--1007409 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1007347 GTTGGCTTAG
*
1007357 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
1007383 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
1007409 G
1 G
1007410 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:1008696 original size:158 final size:157
Alignment explanation
Indices: 1008385--1008754 Score: 415
Period size: 158 Copynumber: 2.4 Consensus size: 157
1008375 GCTCAATGCT
* * * * *
1008385 CGCACGCTCGTTTCATGGGTTGACTTCGGCATGCGGAGTTCATTCCCAGTCTAAGTTTGGATAGA
1 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAATAGA
** * * * **
1008450 CTGAGGGTTACGGTAGCAAGATCGACAGCACGTAGGGGGGATCGAGTCGATCCTCGACTTACGTA
66 CTGAGGGTTACGACAGCAAGATCGACAGCACGTAGGAGGGACCGAGCCGATCCTCGACTTACACA
*
1008515 TTCTACCTCTTCAGCCGGCTGAGCGCC
131 TTCTACCTCTCCAGCCGGCTGAGCGCC
* *
1008542 CGCACGCTCGTTTCATGGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATTGAACTGG
1 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAA-TAG
* * *
1008607 A-TCGAGGGTTACGACAGCAGGATC-AGTAGCACGTAGGAGGGACC-AGGCCGATCCTCGACTTG
65 ACT-GAGGGTTACGACAGCAAGATCGA-CAGCACGTAGGAGGGACCGA-GCCGATCCTCGACTTA
* * * * *
1008669 CACATTCTGCCTCTCCGGTCGGTTGAGCGCT
127 CACATTCTACCTCTCCAGCCGGCTGAGCGCC
* * * * *
1008700 TGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
1 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
1008755 CCCAGTCGGA
Statistics
Matches: 179, Mismatches: 29, Indels: 9
0.82 0.13 0.04
Matches are distributed among these distances:
157 61 0.34
158 118 0.66
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (157 bp):
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAATAGA
CTGAGGGTTACGACAGCAAGATCGACAGCACGTAGGAGGGACCGAGCCGATCCTCGACTTACACA
TTCTACCTCTCCAGCCGGCTGAGCGCC
Found at i:1008879 original size:158 final size:156
Alignment explanation
Indices: 1008716--1009072 Score: 360
Period size: 158 Copynumber: 2.3 Consensus size: 156
1008706 CCCATTTCAT
* * * *
1008716 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGACC-AAGGGCTGTGGCA
1 GGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACA-TCGGACCGAA-GGCTGTGACA
** * * * **
1008780 GTGGGACCGACAGCATGCAGAAGAGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCTGA
64 GCAGGACCGACAGCACGCAG-AGAGGACCAGGCCGATCCCCAACTTGCGCATTATGCCTCTCCAA
1008845 CCAACGGAGCGCCCGTACGCTCGTTTCGTA
128 CCAACGGAGCGCCCGTACGCTCGTTTCG-A
* * *
1008875 -GGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCACATCGGACCGAAGGTTGTGAT
1 GGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG--CACATCGGACCGAAGGCTGTGAC
* * * * * * *
1008938 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAACTTGTGCATTCTGCCTCTCCAA
63 AGCAGGACCGACAGCACGCAGAGAGGACCAGGCCGATCCCCAACTTGCGCATTATGCCTCTCCAA
**** * *
1009003 TTGGCTGAGCGCCCGTACGCTCGTTTTGA
128 CCAACGGAGCGCCCGTACGCTCGTTTCGA
* * *
1009032 GGGTTGTCTTAGGCATACGGAGTTTATTCCATGTCCAAGCA
1 GGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1009073 TACGGGGTTC
Statistics
Matches: 161, Mismatches: 31, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 4 0.02
158 117 0.73
159 33 0.20
160 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (156 bp):
GGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACATCGGACCGAAGGCTGTGACAGC
AGGACCGACAGCACGCAGAGAGGACCAGGCCGATCCCCAACTTGCGCATTATGCCTCTCCAACCA
ACGGAGCGCCCGTACGCTCGTTTCGA
Found at i:1009209 original size:184 final size:184
Alignment explanation
Indices: 1008886--1009250 Score: 453
Period size: 184 Copynumber: 2.0 Consensus size: 184
1008876 GTTGACTTAG
* * * *
1008886 GCATACGAAGTTCATTCCCAGTCTAAGATCACATCGGACCGAAGGTTGTGATAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCACACCGGACCGAAGGTTGCGACAGCAGGATCAACA
* * * * *
1008951 GCACGCAGGGGGGATCGGGCCGATCCCCAACTTGTGCATTCTGCCTCTCCAATTGGCTGAGCGCC
66 GCACACAGGGGGGATCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCAATCGACTGAGCGCC
* * * * * *
1009016 CGTACGCTCGTTTTGAGGGTTGTCTTAGGCATACGGAGTTTATTCCATGTCCAA
131 CGCACGCTCGTTTCGACGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCCAA
** ** * * *
1009070 GCATACGGGGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCAACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCACACCGGACCGAAGGTTGCGACAGCAGGATCAACA
* * * * *
1009135 GCACATAGGGGGGATCAGGCC-ATTCCCCGACTTGCGCATTCTGCCTCTTCGATCGACTGAGTGC
66 GCACACAGGGGGGATCAGGCCGA-TCCCCAACTTGCGCATTCTGCCTCTCCAATCGACTGAGCGC
* *
1009199 CCGCACGCTCGTTTCGTCGGTAGGCTTAGGCATACGGAGTTCATTGCATGTC
130 CCGCACGCTCGTTTCGACGGTAGGCTTAGGCATACGGAGTTCATTCCATGTC
1009251 TAAACCCCAG
Statistics
Matches: 151, Mismatches: 29, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
183 1 0.01
184 150 0.99
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCACACCGGACCGAAGGTTGCGACAGCAGGATCAACA
GCACACAGGGGGGATCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCAATCGACTGAGCGCC
CGCACGCTCGTTTCGACGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCCAA
Found at i:1009444 original size:26 final size:26
Alignment explanation
Indices: 1009414--1009464 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1009404 TGACTTAGCT
1009414 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
1009440 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
1009465 ATCGAAGTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:1009791 original size:26 final size:26
Alignment explanation
Indices: 1009755--1009807 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1009745 GTTTACTTAG
1009755 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1009781 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1009807 G
1 G
1009808 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1009966 original size:344 final size:339
Alignment explanation
Indices: 1008804--1010124 Score: 1072
Period size: 344 Copynumber: 3.8 Consensus size: 339
1008794 ATGCAGAAGA
* * * * ** * * * *
1008804 GGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCTGACCAACGGAGCGCCCGTACGCTCGT
1 GGACCAGGC-CATCCCAG-CTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCCCGCACGCTCGT
* * * * * * * * *
1008869 TTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCACA-TCGGACCGAAGGT
64 TTCGTGGGTAGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGAACCGAGGGT
** ** * **** * *
1008932 TGTGATAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCAACTTGTGCATTCTGCC
127 TGTGGCAGCAGGATCGGTAGCA-GCAGAGGGGGA-CGGGCTGATCCTTGGCTTGCGCATTATGCC
* ** ** * * * *
1008996 TCTCCAATTGGCTGAGCGCCCGTACGCTCGTTTT-GAGGGTTGTCTTAGGCATACGGAGTTTAT-
190 TCTTCGGTTGGCTGAGCGCCCACACGCTTGTTTTCGATGGTTGACTTAGGCATACGGAGTTCATC
* * * * *
1009059 TCCATGTCCAAGCATACGGGGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAG
255 CCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACAGAGGGTTGCGGCAG
* * *
1009124 CAGGATCAACAGCACATAGGGG
318 TAGGATCAGCAGCACACAGGGG
* * * *
1009146 GGATCAGGCCATTCCCCGACTTGCGCATTCTGCCTCTTCGATCGACTGAGTGCCCGCACGCTCGT
1 GGACCAGGCCA-TCCCAG-CTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCCCGCACGCTCGT
* * * * *
1009211 TTCGTCGGTAGGCTTAGGCATACGGAGTTCATTGCATGTCTAAACCCCAGTCGGACCGAGGGTTG
64 TTCGTGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTG
1009276 TGGCAGCAGGACTGACAGTGAGATCAGCAGAACGTAGAGGGGGACTGGGCTGATCCTTGGCTTGC
129 TGGCAGCAGGA-T--C---G-G-T-AGCAG--C--AGAGGGGGAC-GGGCTGATCCTTGGCTTGC
* ** * **
1009341 GCATTAAGCCTATCCGACAGGCCTCTCCTGCCGGCTGAGC-ACCAGCACGC-TCATTTC-ATGGG
180 GCATTATGCC--T-CTTC-GG----T--T---GGCTGAGCGCCCA-CACGCTTGTTTTCGAT-GG
1009403 TTGACTTA-GCTATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
230 TTGACTTAGGC-ATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
1009467 CGAAGT-AGACAGAGGGCTGCGACAGTAGGATC-GATAGCACGC-GGGG
294 CG-A-TCGGACAGAGGGTTGCGGCAGTAGGATCAG-CAGCACACAGGGG
* * *
1009513 GGACCAGGCCAATCCCCAGCTTGCGCATTCTGCTTCTCCGGTCGACTGAGCGCCCGCACGCTCAT
1 GGACCAGGCC-AT-CCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCCCGCACGCTCGT
* *
1009578 TTCATGGGTAGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTG
64 TTCGTGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTG
* ** *
1009643 TGGCAGCGGGATCGGTAGCATGCACCGGGGGATCGGGCTGATCCTTGGCTTACGCATTATGCCTC
129 TGGCAGCAGGATCGGTAGCA-GCAGAGGGGGA-CGGGCTGATCCTTGGCTTGCGCATTATGCCTC
** *
1009708 TTCGGTTGATTGAGCGCCCACACGCTTGTTTTCGATGGTTTACTTAGGCATACGGAGTTCATCCC
192 TTCGGTTGGCTGAGCGCCCACACGCTTGTTTTCGATGGTTGACTTAGGCATACGGAGTTCATCCC
* * *
1009773 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTGCGGCAGTAA
257 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACAGAGGGTTGCGGCAGTAG
1009838 GATCAGCAGCACACAGGGG
321 GATCAGCAGCACACAGGGG
* * * * * *
1009857 GGACCAAGCCGATCCCTAGCTTGCTCATTCTGCCTCTCCGGTCGGCTGAGTGCCTGGACGCCCGT
1 GGACCAGGCC-ATCCC-AGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCCCGCACGCTCGT
* * * *
1009922 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAG-CCAGATCGAGGGTT
64 TTCGTGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA-ACCGAGGGTT
* * ** ** *
1009986 GTGGCAGCAAGACCGACAGCACGCAGAGGGGGACCAAGCTGATTCC-TGGCTTGTGCATTATGCC
128 GTGGCAGCAGGATCGGTAGCA-GCAGAGGGGGA-CGGGCTGA-TCCTTGGCTTGCGCATTATGCC
* * * ** *
1010050 TTTTCGGTTGGCTCAGCACCTGCACGCTTG-TTTCG-TGTGTTGACTTACGCATACGGAGTTCAT
190 TCTTCGGTTGGCTGAGCGCCCACACGCTTGTTTTCGATG-GTTGACTTAGGCATACGGAGTTCAT
* *
1010113 TCTCAGTCTAAG
254 CCCCAGTCTAAG
1010125 ATCGGACCGG
Statistics
Matches: 792, Mismatches: 132, Indels: 109
0.77 0.13 0.11
Matches are distributed among these distances:
341 6 0.01
342 125 0.16
343 142 0.18
344 186 0.23
345 5 0.01
347 1 0.00
348 1 0.00
350 1 0.00
351 6 0.01
352 3 0.00
353 1 0.00
354 3 0.00
355 61 0.08
356 1 0.00
357 2 0.00
358 6 0.01
359 2 0.00
360 1 0.00
361 1 0.00
363 1 0.00
364 1 0.00
365 1 0.00
366 1 0.00
367 132 0.17
368 99 0.12
369 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (339 bp):
GGACCAGGCCATCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCCCGCACGCTCGTTT
CGTGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTG
GCAGCAGGATCGGTAGCAGCAGAGGGGGACGGGCTGATCCTTGGCTTGCGCATTATGCCTCTTCG
GTTGGCTGAGCGCCCACACGCTTGTTTTCGATGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATCGGACAGAGGGTTGCGGCAGTAGGATCA
GCAGCACACAGGGG
Found at i:1010968 original size:343 final size:344
Alignment explanation
Indices: 1010171--1011666 Score: 1468
Period size: 343 Copynumber: 4.3 Consensus size: 344
1010161 CAGTATATAG
* * * * * * * *
1010171 GGGGGATCGGGTTGATCCCCAGCTAACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGCT
1 GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCACACGCT
* * * * * *
1010236 CATTTCGTTG-GTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGTAGTTCATTC
66 CGTTTC-ATGAGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATAAGGAGTTCATTC
* * *
1010299 CCAGTCTATGATCGG-TCCAGACCGATGGTTGCGACAGCAGG-ACAGGCAGTAGGATCGACAGCA
129 CCAGTCTAAGATCGGAT-CAGATCGAGGGTTGCGACAGCAGGAAC-GGC---A-G--C-AC-GCA
* * * *
1010362 CGCCGAGGGGACCAGGCCAATCCCCGGA-TTGTGCATTCTGCCTCTCCGGCTGGCTGAATGCCCA
184 -G--GAGGGGACCAGGCCGATCCCC-GACTTGTGCATTCTGCCTCTCCGACTGGCTGAACGCCCG
* * * * *
1010426 CATGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGCAAGTCTAAGCCCCAG-TCGGA
245 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGA
* * **
1010490 CCGAA-AGTTGTGGTAGCGGGACCGACAGCACATAAAG-
309 CC-AAGGGTTGTGGCAGCGGGACCGACAGCAC--GCAGC
* *
1010527 GGGGGATCGAGCTGATCCCCGACTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCACACGCT
1 GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCACACGCT
* * *
1010592 CGTTT--TGTAGGTTGACTTAGGCATACAGAGTTCATCCTCAGTCTTAGCATAAGGAGTTCATTC
66 CGTTTCATG-A-GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTC
* * *
1010655 CCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCAGGAACGGTAGCACGCAGGA-GGGACC
129 CCAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAGCAGGAACGGCAGCACGCAGGAGGGGACC
* * ** * *
1010719 -GAGCCGATCCCCGACTTGTGCATTCTGCCTCCCCGACTGACTGAGTGCCCGCACGCCCATTTTG
194 AG-GCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACTGGCTGAACGCCCGCACGCCCGTTTCG
* ** * * *
1010783 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCATAGCTGGACCAAGGGTTATCGT
258 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGC
* *
1010848 AACGGGACCGGCAGCACGCAGC
323 AGCGGGACCGACAGCACGCAGC
* * ** * * *
1010870 GGGGGATTGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGACTGAGCGCCAACACCCT
1 GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCACACGCT
* **
1010935 CGTTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCTA-GAGTTCATTTT
66 CGTTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT-AAGGAGTTCATTCC
* * * * * * * *
1010999 CAGTCTAAGATCGAACCGGA-CTGAGGGTTAC-AGTAGCAGGATCGACAGCATGCA-G-GGGGAC
130 CAGTCTAAGATCGGATCAGATC-GAGGGTTGCGA-CAGCAGGAACGGCAGCACGCAGGAGGGGAC
* * * * * *
1011060 C-GAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCG-GTCGGCTGAGCGCCTGCATGCCCGTTT
193 CAG-GCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACT-GGCTGAACGCCCGCACGCCCGTTT
* *
1011123 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTG
256 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTG
* * *
1011188 GCAGCAGGACCTACAGCACGTAGC
321 GCAGCGGGACCGACAGCACGCAGC
** * * * * * *
1011212 GCAGGATCGGGCTAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGATTGAGCACCCACACACT
1 GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCACACGCT
* * * **
1011277 TGTTTCCTGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCA-AATGGAGTTCATTCC
66 CGTTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAA-GGAGTTCATTCC
* ** *
1011341 CAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATGGGCAGCATGCA-GAGGGGACCA
130 CAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAGCAGGAACGGCAGCACGCAGGAGGGGACCA
* * ** * * * *
1011405 GGCCGATCCCCGACTTATGCATTTTGCCTCTCCGACCCGCTCAACGTCTGTACGCCCGTTTCGTG
195 GGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACTGGCTGAACGCCCGCACGCCCGTTTCGTG
* * *
1011470 GGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
260 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAG
* * * **
1011535 TGGGACCGGCACCACGCAAA
325 CGGGACCGACAGCACGCAGC
* * * * * *
1011555 GGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCT
1 GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCACACGCT
* * * *
1011620 CATTTCATGGGTTGACTTATGCATACGGAGTTCATCCCTAGTCTAAG
66 CGTTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1011667 ATCAGACTGG
Statistics
Matches: 953, Mismatches: 162, Indels: 63
0.81 0.14 0.05
Matches are distributed among these distances:
340 1 0.00
341 1 0.00
342 287 0.30
343 381 0.40
344 124 0.13
345 5 0.01
347 1 0.00
348 3 0.00
349 2 0.00
350 1 0.00
352 1 0.00
353 3 0.00
356 138 0.14
357 5 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (344 bp):
GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCACACGCT
CGTTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCC
AGTCTAAGATCGGATCAGATCGAGGGTTGCGACAGCAGGAACGGCAGCACGCAGGAGGGGACCAG
GCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACTGGCTGAACGCCCGCACGCCCGTTTCGTGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGC
GGGACCGACAGCACGCAGC
Found at i:1011381 original size:685 final size:686
Alignment explanation
Indices: 1010349--1011666 Score: 1709
Period size: 685 Copynumber: 1.9 Consensus size: 686
1010339 GACAGGCAGT
* *
1010349 AGGATCGACAGCACGCCGAGGGGACCAGGCCAATCCCCGGATTGTGCATTCTGCCTCTCCGGCTG
1 AGGATCGACAGCACGCAGAGGGGACCAGGCCAATCCCCGGATTGCGCATTCTGCCTCTCCGGCTG
* * *
1010414 GCTGAATGCCCACATGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGCAAGTCTAAG
66 GCTGAACGCCCACATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAG
* * ** *
1010479 CCCCAGTCGGACCGAAAGTTGTGGTAGCGGGACCGACAGCACATAAAGGGGGGATCGAGCTGATC
131 CCCCAGTCGGACCGAAAGTTGTGGCAGCAGGACCGACAGCACAT-AAGGCAGGATCGAGCTAATC
* * * **
1010544 CCCGACTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCACACGCTCGTTTTGTAGGTTGACT
195 CCCGACTTACGCATTATGCCTCTCCGACCGACTGAGCACCCACACACTCGTTTCCTAGGTTGACT
* * * *
1010609 TAGGCATACAGAGTTCATCCTCAGTCTTAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCG
260 TAGGCATACAAAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCA
* * *
1010674 GATCGAGGGTTGCGATAGCAGGAACGGTAGCACGCAG-GAGGGACC-GAGCCGATCCCCGACTTG
325 GATCGAGGGTTGCGACAGCAGGAACGGCAGCACGCAGAG-GGGACCAG-GCCGATCCCCGACTTA
* * ** *
1010737 TGCATTCTGCCTCCCCGA-CTGACTGAGTGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATA
388 TGCATTCTGCCTCCCCGACCCG-CTCAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
* * * * * *
1010801 GGGAGTTCATTCCATGTCTAAGGCATAGCTGGACCAAGGGTTATCGTAACGGGACCGGCAGCACG
452 AGGAGTTCATTCCATGTCTAAGCCACAGCCGGACCAAGGGTTATCGCAACGGGACCGGCACCACG
** * * * ** ** *
1010866 CAGCGGGGGATTGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGACTGAGCGCCAACA
517 CAAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTCAGCGCCAACA
*
1010931 CCCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCTAGAGTTCAT
582 CCCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCTAGAGTTCAT
1010996 TTTCAGTCTAAGATCGAACCGGACTGAGGGTTACAGTAGC
647 TTTCAGTCTAAGATCGAACCGGACTGAGGGTTACAGTAGC
* **
1011036 AGGATCGACAGCATGCAG-GGGGACC-GAGCTGATCCCC-GACTTGCGCATTCTGCCTCTCCGG-
1 AGGATCGACAGCACGCAGAGGGGACCAG-GCCAATCCCCGGA-TTGCGCATTCTGCCTCTCCGGC
* ** * *
1011097 TCGGCTGAGCGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
64 T-GGCTGAACGCCCACATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCT
* ** * * *
1011162 AAGCCCCAGTTGGACCGAGGGTTGTGGCAGCAGGACCTACAGCACGT-AGCGCAGGATCGGGCTA
128 AAGCCCCAGTCGGACCGAAAGTTGTGGCAGCAGGACCGACAGCACATAAG-GCAGGATCGAGCTA
* * * * *
1011226 ATCCCCGGCTTGCGCATTATGCCTCTCCGACCGATTGAGCACCCACACACTTGTTTCCTGGGTTG
192 ATCCCCGACTTACGCATTATGCCTCTCCGACCGACTGAGCACCCACACACTCGTTTCCTAGGTTG
1011291 ACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCA-AATGGAGTTCATTCCCAGTCTAAGATCGG
257 ACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATAA-GGAGTTCATTCCCAGTCTAAGATCGG
* ** *
1011355 ATCAGATCGAGGGTTGCGGCAGCAGGATGGGCAGCATGCAGAGGGGACCAGGCCGATCCCCGACT
321 ATCAGATCGAGGGTTGCGACAGCAGGAACGGCAGCACGCAGAGGGGACCAGGCCGATCCCCGACT
* * * * * *
1011420 TATGCATTTTGCCTCTCCGACCCGCTCAACGTCTGTACGCCCGTTTCGTGGGTTGGCTTAGGCAT
386 TATGCATTCTGCCTCCCCGACCCGCTCAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCAT
* * * * **
1011485 AAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGGCACCAC
451 AAGGAGTTCATTCCATGTCTAAGCCACAGCCGGACCAAGGGTTATCGCAACGGGACCGGCACCAC
* * **
1011550 GCAAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGC
516 GCAAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTCAGCGCCAAC
* * * *
1011615 ACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATCCCTAGTCTAAG
581 ACCCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1011667 ATCAGACTGG
Statistics
Matches: 536, Mismatches: 87, Indels: 18
0.84 0.14 0.03
Matches are distributed among these distances:
684 4 0.01
685 382 0.71
686 134 0.25
687 16 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (686 bp):
AGGATCGACAGCACGCAGAGGGGACCAGGCCAATCCCCGGATTGCGCATTCTGCCTCTCCGGCTG
GCTGAACGCCCACATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAG
CCCCAGTCGGACCGAAAGTTGTGGCAGCAGGACCGACAGCACATAAGGCAGGATCGAGCTAATCC
CCGACTTACGCATTATGCCTCTCCGACCGACTGAGCACCCACACACTCGTTTCCTAGGTTGACTT
AGGCATACAAAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCAG
ATCGAGGGTTGCGACAGCAGGAACGGCAGCACGCAGAGGGGACCAGGCCGATCCCCGACTTATGC
ATTCTGCCTCCCCGACCCGCTCAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGA
GTTCATTCCATGTCTAAGCCACAGCCGGACCAAGGGTTATCGCAACGGGACCGGCACCACGCAAA
GGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTCAGCGCCAACACCCT
CATTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCTAGAGTTCATTTTC
AGTCTAAGATCGAACCGGACTGAGGGTTACAGTAGC
Found at i:1011686 original size:159 final size:157
Alignment explanation
Indices: 1011329--1011758 Score: 369
Period size: 159 Copynumber: 2.7 Consensus size: 157
1011319 CTAAGCAAAT
* * ** * *
1011329 GGAGTTCATTCCCAGTCTAAGATCGGA-TCAGATCGAGGGTTGCGGCAGCAGGATGGGCAGCATG
1 GGAGTTCA-TCCCAGTCTAAGATCAGACT-GGATCGAGGGTTGCGGCAGCAGGACCGGCACCACG
* * * * * *
1011393 CAGAGGGGACCAGGCCGATCCCCGACTTATGCATTTTGCCTCTCCGACCCGCTCAACGTCTGTAC
64 CAAAGGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCCGCTCAACGCCCGCAC
* * *
1011458 GCCCGTTTCGTGGGTTGGCTTAGGCATAA
129 GCCCATTTCATGGGTTGACTTAGGCATAA
* ** * * * **
1011487 GGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTGGGACCGGCACCACG
1 GGAGTTCATCCCA-GTCTAAG-ATCAGACTGGATCGAGGGTTGCGGCAGCAGGACCGGCACCACG
* * * * * *
1011551 CAAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCA
64 CAAA-GGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCCGCTCAACGCCCGCA
* * *
1011616 CGCTCATTTCATGGGTTGACTTATGCATAC
128 CGCCCATTTCATGGGTTGACTTAGGCATAA
** ** * * * *
1011646 GGAGTTCATCCCTAGTCTAAGATCAGACTGGATCGAGGGTTATGATAGCAGGATCGACAGCACAC
1 GGAGTTCATCCC-AGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCAGGACCGGCACCACGC
** * ** *
1011711 AGGGTGGGACCAGGCCGATCCCCAACTTGTGCATTCTGCCTCTCCGAC
65 AAAG-GGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGAC
1011759 TAGCTGAGCG
Statistics
Matches: 209, Mismatches: 56, Indels: 13
0.75 0.20 0.05
Matches are distributed among these distances:
157 4 0.02
158 48 0.23
159 156 0.75
160 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (157 bp):
GGAGTTCATCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCAGGACCGGCACCACGCA
AAGGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCCGCTCAACGCCCGCACGC
CCATTTCATGGGTTGACTTAGGCATAA
Found at i:1012563 original size:26 final size:26
Alignment explanation
Indices: 1012534--1012586 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1012524 GTTGACTTAG
1012534 GCATACGGAGTTCA-CCCTCAGTCTAA
1 GCATACGGAGTTCATCCCT-AGTCTAA
*
1012560 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
1012586 G
1 G
1012587 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:1013756 original size:26 final size:26
Alignment explanation
Indices: 1013726--1013778 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1013716 GTTGACTTAG
1013726 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
1013752 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1013778 G
1 G
1013779 ATCGGACAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1014114 original size:159 final size:158
Alignment explanation
Indices: 1013752--1014115 Score: 380
Period size: 159 Copynumber: 2.3 Consensus size: 158
1013742 CCCAGTCTAA
* * * * * * *
1013752 GCATACGGGGTTCATTCCCAGTCTAAGATCGGACAAAACTGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAGGCAGCAGGATCGACA
* * * * * * *
1013817 GCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCT
66 GCACGCAGGGGGGACCAGCTCAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCCCT
* *
1013882 CGCACACCTGTTTCAAGGGTTGTCTTAG
131 CGCACACCTATTTCAAGGGTTGACTTAG
* * ** * * *
1013910 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCC-GAATCGAGGGTTGAGGCAGCGGGATGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCAG-ACCGAGGGTTGAGGCAGCAGGATCG
* *
1013972 ACAGCTCGCAGTGGGGGACCAAGCT-AATCCCCAGCTTGTGCATTATGCCTCTCCGACCGGCTCA
63 ACAGCACGCAG-GGGGGACC-AGCTCAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCA
* *
1014036 GCACCT-GCAC-GCTCATTTCATGGGTTGACTTAG
126 GC-CCTCGCACACCT-ATTTCAAGGGTTGACTTAG
1014069 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
1014116 ACGACAATAG
Statistics
Matches: 164, Mismatches: 32, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
157 5 0.03
158 52 0.32
159 97 0.59
160 10 0.06
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAGGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGCTCAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCCCT
CGCACACCTATTTCAAGGGTTGACTTAG
Found at i:1014256 original size:26 final size:26
Alignment explanation
Indices: 1014226--1014278 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1014216 GTTGGCTTAG
*
1014226 GCATACGAAGTTCA-TTCCATGTCTAA
1 GCATACAAAGTTCATTTCCA-GTCTAA
1014252 GCATACAAAGTTCATTTCCAGTCTAA
1 GCATACAAAGTTCATTTCCAGTCTAA
1014278 G
1 G
1014279 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTTCCAGTCTAA
Found at i:1014459 original size:26 final size:26
Alignment explanation
Indices: 1014423--1014475 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1014413 GTTAACTTAG
1014423 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
1014449 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1014475 G
1 G
1014476 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1014953 original size:158 final size:158
Alignment explanation
Indices: 1014449--1014952 Score: 602
Period size: 158 Copynumber: 3.2 Consensus size: 158
1014439 CCTAGTCTAA
* * ** *
1014449 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGCGACAGTAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCGAC
* * * *
1014513 AGCACGTAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGC
65 AGCACGAAGGGGGGATCGGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGATCGGCTGAGCGC
* *
1014578 CCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCATTTCATGGGTTGACTTAG
* ** * * **
1014607 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCGAC
* * * * *
1014671 AGCACACAAGAGGGGATCGGGCTGATCCCTGGCTTACGCATTATGCCTCTTCGATCGGCTCAGTG
65 AGCAC-GAAGGGGGGATCGGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGATCGGCTGAGCG
* *
1014736 CCCGCACGCTCATTTCGTGGGTTGACTTAT
129 CCCGCACGCTCATTTCATGGGTTGACTTAG
** *
1014766 GCATACGGAGTTCATTCC-TAGTCTAAGATTGGATCAGACCGAGGGTTCCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCGAC
* * * * *
1014830 AGCACGAAGGGGGGATCGGGCTGATCCCTGGCTTGCACATTATACCTCTCC-AGCTGGCTGAGCA
65 AGCACGAAGGGGGGATCGGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGATC-GGCTGAGCG
* **
1014894 CCCGCACGCTTATTAAATGGGTTGACTTAG
129 CCCGCACGCTCATTTCATGGGTTGACTTAG
*
1014924 GCATGCGGAGTTCATTCCATGTCTAAGAT
1 GCATACGGAGTTCATTCCATGTCTAAGAT
1014953 TTTGAGCCAC
Statistics
Matches: 288, Mismatches: 51, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
157 5 0.02
158 148 0.51
159 135 0.47
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCGACA
GCACGAAGGGGGGATCGGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGACTTAG
Found at i:1016135 original size:26 final size:26
Alignment explanation
Indices: 1016099--1016151 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1016089 GTTGGCTTAG
1016099 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
1016125 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1016151 G
1 G
1016152 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1016951 original size:157 final size:156
Alignment explanation
Indices: 1016533--1016995 Score: 427
Period size: 159 Copynumber: 2.9 Consensus size: 156
1016523 GGATTGGACT
* * * * *
1016533 GAGGGTTGCGACAGCAAGATCGACAGCACGTAGGGGGGA-CTGGGCCAATCCCCGGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACG-AAGGGGGATC-GGGCCGATCCCCGGCTTGCGCAT
* * * * * * * * *
1016597 TCTGCCTCTCCGGCCTGCTGAGCACCCGCAGGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
64 TCTGCCTCTCCGGTC-GCTGAGCATCCGTACGCTCGTTTCGTGGGTTGACTTAGGAATAGGAAGT
* *
1016662 TCATTCCATGTCTAAGCCCCAGCCGAACT
128 TCATTCCATGTCTAAGCACCAGCCGAACC
* * * ** * *
1016691 GAGGGTTATGGCAG-TGAGACCGGTAGCACGTAAAGGGGGATCAGGCCGATCCCCGGCTTGCTCA
1 GAGGGTTGTGGCAGCAG-GATCGACAGCACG--AAGGGGGATCGGGCCGATCCCCGGCTTGCGCA
* * * * *
1016755 TTATGCCTCTTCGGTCGGCTCAGC-TCCTGTACGCTCGTTTCGTGGGTTGACTTATGAATATGAA
63 TTCTGCCTCTCCGGTC-GCTGAGCATCC-GTACGCTCGTTTCGTGGGTTGACTTAGGAATAGGAA
**
1016819 GTTCATTCC-TAGTCTAAG-ATTAGACC-AGACC
126 GTTCATTCCAT-GTCTAAGCACCAG-CCGA-ACC
* *
1016850 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTC
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTC
* * * *
1016915 TGCCTCTCCGGTCGACTGAGCATCCGTACGCTCGTTTCGTGGGTTGGCGTAGGCATA-CAGAGTT
66 TGCCTCTCCGGTCG-CTGAGCATCCGTACGCTCGTTTCGTGGGTTGACTTAGGAATAGGA-AGTT
*
1016979 CAGTCCATGTCTAAGCA
129 CATTCCATGTCTAAGCA
1016996 TACAGAGTTC
Statistics
Matches: 242, Mismatches: 50, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 91 0.38
158 32 0.13
159 115 0.48
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GAGGGTTGTGGCAGCAGGATCGACAGCACGAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTC
TGCCTCTCCGGTCGCTGAGCATCCGTACGCTCGTTTCGTGGGTTGACTTAGGAATAGGAAGTTCA
TTCCATGTCTAAGCACCAGCCGAACC
Found at i:1017003 original size:26 final size:26
Alignment explanation
Indices: 1016967--1017019 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1016957 GTTGGCGTAG
1016967 GCATACAGAGTTCAGT-CCATGTCTAA
1 GCATACAGAGTTCAGTCCCA-GTCTAA
*
1016993 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
1017019 G
1 G
1017020 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:1017697 original size:26 final size:26
Alignment explanation
Indices: 1017647--1017699 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1017637 GTTGACTTAG
*
1017647 GCATACAGAGTTCATCTCCGATCTAA
1 GCATACAGAGTTCATCTCCCATCTAA
1017673 GCATACAGAGTTCAT-TCCCAGTCTAA
1 GCATACAGAGTTCATCTCCCA-TCTAA
1017699 G
1 G
1017700 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCCATCTAA
Found at i:1017961 original size:159 final size:157
Alignment explanation
Indices: 1017737--1018345 Score: 546
Period size: 158 Copynumber: 3.8 Consensus size: 157
1017727 CAAGATCGAC
* * *
1017737 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCTGTCTGAGCGC
1 AGCACGCAGGGGGGACCGAACCGATCCCCGGCTTACGCATTCTGCCTCTCCGGC-GGCTGAGCGC
* * * * * * *
1017802 CGGTACGCCCATTTCGTGGGTCGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TC
65 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGATC
* *
1017866 GAA-CTGAGGGTTG-TGGCAGCGGGACCGAT
129 GAATC-GAGGGTTGCT-GCAACAGGACCGAT
* * * * *
1017895 AGCACGCAGAGAGGGACCGAACTGATCCCCGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCG
1 AGCACGCAG-GGGGGACCGAACCGATCCCCGGCTTACGCATTCTGCCTCTCCGG-CGGCTGAGCG
* ***
1017960 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CATAGTCTAAGATTGGAT
64 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAGAT
* *
1018024 CGGATCGAGGGTTGCTGCAACAGGATCGAT
128 CGAATCGAGGGTTGCTGCAACAGGACCGAT
* * ** * *
1018054 AGCACGTAGGGGGGACCGGACCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGC
1 AGCACGCAGGGGGGACCGAACCGATCCCCGGCTTACGCATTCTGCCTCTCCGG-CGGCTGAGCGC
* * *
1018119 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCAGACC
65 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGATC
* * *
1018183 GAACCGAGGGTTGCTATAGCAGGACCAGCAGCAGGATCT
129 GAATCGAGGGTTGC--T-GCA--A-CAGGA-C-CGA--T
* * * ** * * *
1018222 GCAGCACGCAAGGAGCGA-CTAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCAGCTGA
1 --AGCACGC-AGGGGGGACCGA-ACCGATCCCCGGCTTACGCATTCTGCCTCTCC-GGCGGCTGA
* * *
1018286 GTGCCCGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
61 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1018346 CCCCAGCCAG
Statistics
Matches: 366, Mismatches: 61, Indels: 35
0.79 0.13 0.08
Matches are distributed among these distances:
158 125 0.34
159 122 0.33
160 6 0.02
161 3 0.01
163 1 0.00
164 4 0.01
166 2 0.01
168 1 0.00
170 10 0.03
171 91 0.25
172 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
AGCACGCAGGGGGGACCGAACCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGATCGA
ATCGAGGGTTGCTGCAACAGGACCGAT
Found at i:1018444 original size:171 final size:171
Alignment explanation
Indices: 1018085--1018517 Score: 459
Period size: 171 Copynumber: 2.5 Consensus size: 171
1018075 CGATCCCTAG
* *
1018085 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCCGCACGCTAGTTTCATGGGTTGGCTTAGGC
* *
1018150 ATATGGAGTTCATTCCCAGTCTAAG-ATCAGACCGAACCGAGGGTTGCTATAGCAGGACCAGCAG
66 ATACGGAGTTCATT-CCAGTCTAAGCACCAGACCGAACCGAGGGTTGCTATAGCAGGACCAGCAG
* * * *
1018214 CAGGATCTGCAGCACGCAAGGAGCGACTAGGTCGATCCCCGG
130 CAGGATCTGCAGCACGCAAGGAGCGACGAGCTAGATCCCCGA
* * * **
1018256 CTTGCGCATTCTGCCTCTCCAGTCAGCTGAGTGCCCGCACGCTAGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCCGCACGCTAGTTTCATGGGTTGGCTTAGGC
* * * * *
1018321 ATACGGAGTTCATTCCATGTCTAAGCCCCAG-CC-AGACTGAGGGTTG-TGGTAGCAGGACCGGT
66 ATACGGAGTTCATTCCA-GTCTAAGCACCAGACCGA-ACCGAGGGTTGCT-ATAGCAGGACCAGC
* * *
1018383 AGCGGGAT-TAGCAGCGCGC-AGAGAGGGATCGAGCTAG-TCCCCGA
128 AGCAGGATCT-GCAGCACGCAAG-GAGCGA-CGAGCTAGATCCCCGA
* * * * * *
1018427 CTTGCACATTATGCCTCTCCGGCCGGCTGAACACCTGCACGCTCA-TTTTATGGGTTGACTTAGG
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCCGCACGCT-AGTTTCATGGGTTGGCTTAGG
* * *
1018491 CATTCAGAGTTCATCCCCAGTCTAAGC
65 CATACGGAGTTCAT-TCCAGTCTAAGC
1018518 GTACAGAGTT
Statistics
Matches: 218, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
170 8 0.04
171 198 0.91
172 12 0.06
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (171 bp):
CTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCCGCACGCTAGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCAGTCTAAGCACCAGACCGAACCGAGGGTTGCTATAGCAGGACCAGCAGC
AGGATCTGCAGCACGCAAGGAGCGACGAGCTAGATCCCCGA
Found at i:1019041 original size:26 final size:26
Alignment explanation
Indices: 1018991--1019043 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
1018981 GTTGGCATAG
*
1018991 GCATACGAAGTTCATTCCATTTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
1019017 GCATAC-AGAGTTCATTCCCA-GTCTAA
1 GCATACGA-AGTTCATT-CCATGTCTAA
1019043 G
1 G
1019044 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:1020036 original size:155 final size:158
Alignment explanation
Indices: 1019739--1020239 Score: 414
Period size: 155 Copynumber: 3.2 Consensus size: 158
1019729 CCTAGTCTAA
* * * * * * *
1019739 GCATACAGAGTTCATTCCTTATCAAAG-ATCAGACC-GAACCGAGGGTTGCGACAGCAGGATC-A
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAG-ACCAAGGGTTGCGGCAGCA-GA-CGA
* * * * ** * * *
1019801 GCAACACGTAG-GGGGGATCGGGCTGATCCCTGGCTTGTGCATTTTGCCTCTCCGG-CTGGCTGA
63 -CAACACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTC-GGCTAA
* *
1019864 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
126 GCGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * * *
1019897 GCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-CC-GAACCGAGGGTTGTGGCAGCA-A-GACA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAG-ACCAAGGGTTGCGGCAGCAGACGACA
* * * * * ** * *
1019958 GCACGCAGAGGGGGACCGGGCCTATCCTC-GACTTTCGCATTATGCCTCTTTGGTCGGCTCAGTG
65 ACACGCAGAGGGGGACCGAGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGGTCGGCTAAGCG
* *
1020022 CCCGCACACTCGTTTCGTGGGTTGACTTAT
129 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
*** * *
1020052 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCAGACCAAGGGTTGCGGTAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAGCA-GA-CGA
* * * * *
1020115 CAACACGCAGGGGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTTCCTCTCCGGTCGGCTAAGC
63 CAACACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGC
1020180 GCCCGCACACTCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* *
1020211 GCATATGAAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
1020240 TACGGAGTTC
Statistics
Matches: 272, Mismatches: 56, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
154 10 0.04
155 104 0.38
156 6 0.02
157 1 0.00
158 45 0.17
159 104 0.38
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAGCAGACGACAA
CACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGCC
CGCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:1020968 original size:26 final size:26
Alignment explanation
Indices: 1020932--1020984 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1020922 CTTGACTTAG
1020932 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1020958 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1020984 G
1 G
1020985 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1022345 original size:26 final size:26
Alignment explanation
Indices: 1022307--1022359 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1022297 GTTGGCTTAG
*
1022307 GCATACGGAGTTCATT-CCATGTTTAA
1 GCATACAGAGTTCATTCCCA-GTTTAA
*
1022333 GCATACAGTGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTTTAA
1022359 G
1 G
1022360 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTTTAA
Found at i:1022533 original size:26 final size:26
Alignment explanation
Indices: 1022503--1022554 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1022493 GTTGACTTAG
*
1022503 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
1022529 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1022555 AATCAGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1023923 original size:158 final size:159
Alignment explanation
Indices: 1023747--1024099 Score: 376
Period size: 158 Copynumber: 2.2 Consensus size: 159
1023737 TTTCGTGGGA
* * * * *
1023747 TGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCTG-ACTGAGGGTTGTGGCAGC
1 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACC-GAACCGAGGGTTGCGGCAGC
* * *
1023810 GGGACTGGCAGCACGCAGAGGGGG-CCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACC
65 AGGACTGACAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTATACCTCTCCGACC
*
1023874 AGCTCAGCGCCCGCACACTT-GTTTCATGGAT
129 AGCTCAGCACCCGCAC-CTTCGTTTCATGGAT
* *
1023905 TGGCTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCGAACCGAGGGTTGCGGCAGT
1 TGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAGC
* * * * * * * * * * * * *
1023968 AGGATTGACAGCACGTAGGGGGGATCGGGTCGGTCCCTGACTTTCGTATTCTACCTCTCTGATCG
65 AGGACTGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATACCTCTCCGACCA
* * * *
1024033 GCTGAGCACCCGTACGTTCGTTTCATGGTT
130 GCTCAGCACCCGCACCTTCGTTTCATGGAT
1024063 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1024100 TACAGAGTTC
Statistics
Matches: 160, Mismatches: 28, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 12 0.08
158 146 0.91
159 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAGCA
GGACTGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATACCTCTCCGACCAG
CTCAGCACCCGCACCTTCGTTTCATGGAT
Found at i:1024101 original size:26 final size:25
Alignment explanation
Indices: 1024071--1024122 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
1024061 TTTGGCTTAG
*
1024071 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
1024097 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
1024122 G
1 G
1024123 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:1024375 original size:197 final size:197
Alignment explanation
Indices: 1024028--1024408 Score: 459
Period size: 197 Copynumber: 1.9 Consensus size: 197
1024018 CTACCTCTCT
* * * * * *
1024028 GATCGGCTGAGCACCCGTACGTTCGTTTCATGGTTTGGCTTAGGCATACGGAGTTCATTCCATGT
1 GATCGACTGAGCACCCATACGTTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGT
* * * *
1024093 CTAAGCATACAGAGTTCATTCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCAGGATTG
66 CTAAGCATACAGAGTTCATTCCAGTCTAAGATCAGACCGAATCGAGGGTTACGACAGCAAGATTG
* * * **
1024158 GTAGCACATAGGGAGGGATCGGGTCGA-CCCCTGACTTGTGCATTATGCCTCTCCGGCCGACCTT
131 GCAGCACATAGGGAGGGATCGAGCCGATCCCC-GACTTACGCATTATGCCTCTCCGGCCGACCTT
1024222 TTC
195 TTC
*
1024225 GATCGACTGAGCACCCATACGCTT-GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-
1 GATCGACTGAGCACCCATACG-TTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT-CCCAT
** ** *
1024288 GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAA-CTGAGGGTTTTGACAGTAAG
64 GTCTAAGCATACAGAGTTCATT-CCAGTCTAAGATCAGACCGAATC-GAGGGTTACGACAGCAAG
* *
1024352 ATTGGCAGCACGGT-GGG-GGGATCGAGCCGATCCCCGACTTACGCATTTTGCCTCTCC
127 ATTGGCAGCAC-ATAGGGAGGGATCGAGCCGATCCCCGACTTACGCATTATGCCTCTCC
1024409 TGCTGGTTGA
Statistics
Matches: 155, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
197 100 0.65
198 54 0.35
199 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (197 bp):
GATCGACTGAGCACCCATACGTTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGT
CTAAGCATACAGAGTTCATTCCAGTCTAAGATCAGACCGAATCGAGGGTTACGACAGCAAGATTG
GCAGCACATAGGGAGGGATCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCCGACCTTT
TC
Found at i:1025012 original size:26 final size:26
Alignment explanation
Indices: 1024976--1025029 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
1024966 GTTGACTTAG
*
1024976 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1025002 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1025028 GC
1 GC
1025030 TTTTGAGCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1026227 original size:26 final size:26
Alignment explanation
Indices: 1026198--1026250 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1026188 ATTGGCTTAG
*
1026198 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
1026224 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1026250 G
1 G
1026251 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1026564 original size:25 final size:26
Alignment explanation
Indices: 1026525--1026579 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
1026515 TGAGTTGACT
1026525 TAAGCATACGAAGTT-AATCCCAGTC
1 TAAGCATACGAAGTTCAATCCCAGTC
*
1026550 TAAGCATAC-AGAGTTCATTCCCAGTC
1 TAAGCATACGA-AGTTCAATCCCAGTC
1026576 TAAG
1 TAAG
1026580 ATTGGATCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 1 0.04
25 13 0.48
26 13 0.48
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCAATCCCAGTC
Found at i:1027064 original size:26 final size:26
Alignment explanation
Indices: 1027028--1027080 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1027018 GTTGGCTTAG
*
1027028 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
1027054 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1027080 G
1 G
1027081 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1027298 original size:830 final size:836
Alignment explanation
Indices: 1025670--1028056 Score: 2538
Period size: 830 Copynumber: 2.8 Consensus size: 836
1025660 GTTGAGCGTC
* * * * * * *
1025670 CGCATGCTCGTTTCGTGAATTGACTTTGGCATATGAAGTTCATCCCCAGTCTAAGCATACAGAGT
1 CGCACGCTCATTTCATGAGTTGACTTAGGCATACGAAGTTAATCCCCAGTCTAAGCATACAGAGT
* * ** * * *
1025735 TCATTCTCAGTCTATGATCAGATCGGATCGAGGGTTACGGCAGCAGGATCGGTAGCACGAAGGGG
66 TCATTCCCAGTCTAAGATTGGATCGGATCGAAGGATGCGGCAGCAGGATCGGTAGCACGAA-GGG
* * * * * * *
1025800 GGACC-AGGTCGATCCCCGGCTTGCTCATTCTGCC-CACCGACCGGCTGAGTGCCCGCACGCCTG
130 GGACCGA-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACAGAGCGCTCGCACGCCCG
* * *
1025863 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAGTTGGACTGAGGGTT
194 TTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTT
*** * * * * * **
1025928 GTGGCAGCGAGAATGGTAGCATGCAGAGGGGGATCGGGCCGATCCTCGGCTTGTGCATTATGCCT
259 GTGGCAGCG-GACCAGCAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTATGCCT
* * ** * * * * *
1025993 CTCCGGCTGGCTCAACGCCTGCA-TGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
323 CTCCAGCCGGCTCAGTGCCCGAACT-CTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTC
* * * * *
1026057 CC-GATCTAAGATCGAACCGAACCAAGGGTTGCTGCAGCAGGATCGACAACACACAGGGGGTGAC
387 CCAG-TCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGG-GAC
* * * * * * * *
1026121 C-AGGCCGGTCTCGA-CTTGTGCATTCTGGCTCTCCGATCGGCAGAACGCCCTCATGCTCGTTTC
450 CGA-GCC-GTCCCCAGCTTGTGCATTCTAGCTCTCCTACCGGC-TAA-GCCCACACGCTCGTTTC
* *
1026184 GTGGATTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
511 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
1026249 AGATCAGATCGGATCGAA-GGTTGT-GATAGCAAGATGAA-CAGCAAGATCGACAGCACGTAGGG
576 AGATCAGATCGGA-CCAAGGGTT-TCGATAGCAAGA-CAAGCAGCAGGATCGGCAGCACGTAGGG
* * ** * * * ** * * **
1026311 GGGACCGGGCCGAT-CCTCGGCTTACGTATTCTACCTTTTCGACTGGTTGAGTGCCCGTATGCTC
638 GGGACCGGGCTGATCCCT-AGCTTGTGCATTCTACCTCTCCGGTTGGCTAAGTGCCCCCATGCTC
* * * * *
1026375 ATTTCGTGGGTTGGCTTAGGCATATGAAGTTTATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
702 ATTTCATGGGTTGGCTTAGGCAAACGAAGTTCATTCCAAGTCTAAGCCCCAGCCAGACCGAGGGT
* * * *
1026440 TGTGGTAGCAGGACTGGCAGCGGGTTCGACAACACGTAAAGGGGGAC-GG-GGC-TG-A-T-C-C
767 TGTGGTAGCAGGACTAGCAGCAGGTTCGACAACACGCAAAAGGGGACGGGCGGCTTGTACTCCGC
1026498 -CT-G
832 ACTGG
*
1026501 -GCACGCTCATTTCATGAGTTGACTTAAGCATACGAAGTTAAT-CCCAGTCTAAGCATACAGAGT
1 CGCACGCTCATTTCATGAGTTGACTTAGGCATACGAAGTTAATCCCCAGTCTAAGCATACAGAGT
* * *
1026564 TCATTCCCAGTCTAAGATTGGATCGGATCGAAGGATGCGACAGTAGGATCGGCAGCACGCAAGGG
66 TCATTCCCAGTCTAAGATTGGATCGGATCGAAGGATGCGGCAGCAGGATCGGTAGCACG-AAGGG
* * * *
1026629 GGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTTTTC-AGTCGACAGAGCGCTCGCATGCCCG
130 GGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGACAGAGCGCTCGCACGCCCG
* * * *
1026693 TTTCGTGGATTGGCTTATGCATAGGGAGTTCATTCCAGGTCTAAGCCCTAGTCGGACTGAGTGTT
194 TTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTT
1026758 GTGGCAGCAGGACCAGCAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTATGCCT
259 GTGGCAGC-GGACCAGCAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTATGCCT
* * *
1026823 CTCCAGTCGGCTCAGTGCCCGAACTCTCGTTTCATGGGTTGAATTAGGCGTACGAAGTTCATTCC
323 CTCCAGCCGGCTCAGTGCCCGAACTCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCC
* ** * *
1026888 CAGTCTAAGATCGAACCGGATCGAGGGTCACGGCAGCAGGATTGACAGCATGCAGGGGGGACCGA
388 CAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGA
* * * *
1026953 GCCGATCCCCAGCTTGTGCATTCTACCTCTCCTACCGGCTAAGTTCTCGCACGCTCATTTCGTGG
453 GCCG-TCCCCAGCTTGTGCATTCTAGCTCTCCTACCGGCTAAG--CCCACACGCTCGTTTCGTGG
*
1027018 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
515 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
1027083 CAGACCGGACCAAGGGTTTCGATAGCAAGACAAGCAGCAGGATCGGTAGCACGCAGGGGGGACCG
580 CAGATCGGACCAAGGGTTTCGATAGCAAGACAAGCAGCAGGATCGGCAGCACGTAGGGGGGACCG
* *
1027148 GGCTGATCCCTAGCTTGTGCATTCTGCCTCTCCGGTTGGCTAAGTGCCCCCATGCTCGTTTCATG
645 GGCTGATCCCTAGCTTGTGCATTCTACCTCTCCGGTTGGCTAAGTGCCCCCATGCTCATTTCATG
* **
1027213 GGTTGGCTTAGGCAAACGGAGTTCATTCCAAGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAG
710 GGTTGGCTTAGGCAAACGAAGTTCATTCCAAGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAG
*
1027278 CAGGACTAGCAGCAGGTTCGACAGCACGCAAAAGGGGACGGGGCTAATCCCTGGCTTATGCATTA
775 CAGGACTAGCAGCAGGTTCGACAACACGCAAAAGGGGAC-GGG-------C-GGC-T-TG---TA
1027343 TGCCTCTCCGGTCGACTGAGCG
826 -----CTCC-G-C-ACT--G-G
* * * ** *
1027365 CCCGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTAATCCCCAACCTAAGCATACGGA
1 --CGCACGCTCATTTCATGAGTTGACTTAGGCATACGAAGTTAATCCCCAGTCTAAGCATACAGA
* * * * * * *
1027430 GTTCATTCCCAGTCTAAGATTGGATTGGACCGAAGGATGGGGTAGCAAGATCGATAGCACGTAGG
64 GTTCATTCCCAGTCTAAGATTGGATCGGATCGAAGGATGCGGCAGCAGGATCGGTAGCACG-AAG
* * *
1027495 GGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACAGAGCACTCGCACGCCC
128 GGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACAGAGCGCTCGCACGCCC
* * *
1027560 GTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCGGCCAGA-TCGAGGG
193 GTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACT-GAGGG
* * *
1027624 TTGTGGTAGCGGGACCAGCAGCACGTAGAGGGGGATCGGGCTGATCCCCAACTTACGCATTATGC
257 TTGTGGCAGC-GGACCAGCAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTATGC
* * * * *
1027689 CTCTCCAGCCAGCTCAGTGCCCGAACGCTCATTTCACGGGTTGAATTAGGCATACGGAGTTTATT
321 CTCTCCAGCCGGCTCAGTGCCCGAACTCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATT
* * * *
1027754 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGGGGACC
386 CCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACC
* * * ** *
1027819 GGGCATGTCCCCAGCTTGTGCATTCTAGCTCT-CTGGCCGATTGAGCGCCCACACGCTCGTTTCG
451 GAGC-CGTCCCCAGCTTGTGCATTCTAGCTCTCCT-ACCGGCT-A-AGCCCACACGCTCGTTTCG
* * * *
1027883 TGGGTTGGCTTAGGCGTACGGAGTTCAGTCCATGTCTAAGAATACGGAGTTCATTCCCAGTCCAA
512 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * * * *
1027948 GATCGGATCGGACCGAGGGTTGCGGTAG-TAGAACTAGTAGTAGGATCGGCAGAACATATGAGGG
577 GATCAGATCGGACCAAGGGTTTCGATAGCAAG-ACAAGCAGCAGGATCGGCAGCACGTA-GGGGG
* * *
1028012 GATCGGGCTAATCCCTAGCTTGTGCATTCTACCTCTCCAGTTGGC
640 GACCGGGCTGATCCCTAGCTTGTGCATTCTACCTCTCCGGTTGGC
1028057 CTCTCCAGTG
Statistics
Matches: 1291, Mismatches: 203, Indels: 86
0.82 0.13 0.05
Matches are distributed among these distances:
828 2 0.00
829 124 0.10
830 551 0.43
831 6 0.00
832 2 0.00
841 3 0.00
844 2 0.00
848 1 0.00
854 1 0.00
855 1 0.00
858 1 0.00
860 2 0.00
864 1 0.00
867 43 0.03
868 502 0.39
869 48 0.04
870 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (836 bp):
CGCACGCTCATTTCATGAGTTGACTTAGGCATACGAAGTTAATCCCCAGTCTAAGCATACAGAGT
TCATTCCCAGTCTAAGATTGGATCGGATCGAAGGATGCGGCAGCAGGATCGGTAGCACGAAGGGG
GACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACAGAGCGCTCGCACGCCCGTT
TCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGT
GGCAGCGGACCAGCAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTATGCCTCTC
CAGCCGGCTCAGTGCCCGAACTCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCC
GTCCCCAGCTTGTGCATTCTAGCTCTCCTACCGGCTAAGCCCACACGCTCGTTTCGTGGGTTGGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
GGACCAAGGGTTTCGATAGCAAGACAAGCAGCAGGATCGGCAGCACGTAGGGGGGACCGGGCTGA
TCCCTAGCTTGTGCATTCTACCTCTCCGGTTGGCTAAGTGCCCCCATGCTCATTTCATGGGTTGG
CTTAGGCAAACGAAGTTCATTCCAAGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGAC
TAGCAGCAGGTTCGACAACACGCAAAAGGGGACGGGCGGCTTGTACTCCGCACTGG
Found at i:1027406 original size:171 final size:170
Alignment explanation
Indices: 1027054--1027406 Score: 404
Period size: 171 Copynumber: 2.1 Consensus size: 170
1027044 CCATGTCTAA
* * *
1027054 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTTCGATAGCAAGACAAGCA
1 GCATACGGAGTTCATTCCAAGTCTAAGACCAGACCGGACCAAGGGTTTCGATAGCAAGACAAGCA
** ** * * *
1027119 GCAGGATCGGTAGCACGCAGGGGGGACCGGGCTGATCCCTAGCTTGTGCATTCTGCCTCTCCGGT
66 GCAGGATCGACAGCACGCAAAGGGGACCGGGCTAATCCCTAGCTTATGCATTATGCCTCTCCGGT
* * * * * * *
1027184 TGGCTAAGTGCCCCCATGCTCGTTTCATGGGTTGGCTTAG
131 CGACTAAGCGCCCCCACGCTCATTTAATGGGTTGACTTAG
* * * * * * *
1027224 GCAAACGGAGTTCATTCCAAGTCTAAGCCCCAG-CTGGACCGAGGGTTGT-GGTAGCAGGACTAG
1 GCATACGGAGTTCATTCCAAGTCTAAG-ACCAGACCGGACCAAGGGTT-TCGATAGCAAGACAAG
* * *
1027287 CAGCAGGTTCGACAGCACGCAAAAGGGGACGGGGCTAATCCCTGGCTTATGCATTATGCCTCTCC
64 CAGCAGGATCGACAGCACGC-AAAGGGGACCGGGCTAATCCCTAGCTTATGCATTATGCCTCTCC
* *
1027352 GGTCGACTGAGCGCCCGCACGCTCATTTAATGGGTTGACTTAG
128 GGTCGACTAAGCGCCCCCACGCTCATTTAATGGGTTGACTTAG
1027395 GCATACGGAGTT
1 GCATACGGAGTT
1027407 AATCCCCAAC
Statistics
Matches: 150, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
170 64 0.43
171 86 0.57
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (170 bp):
GCATACGGAGTTCATTCCAAGTCTAAGACCAGACCGGACCAAGGGTTTCGATAGCAAGACAAGCA
GCAGGATCGACAGCACGCAAAGGGGACCGGGCTAATCCCTAGCTTATGCATTATGCCTCTCCGGT
CGACTAAGCGCCCCCACGCTCATTTAATGGGTTGACTTAG
Found at i:1027896 original size:158 final size:158
Alignment explanation
Indices: 1027421--1027923 Score: 435
Period size: 158 Copynumber: 3.2 Consensus size: 158
1027411 CCCAACCTAA
* *** * * * * * *
1027421 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAAGGATGGGGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCAACA
* * * * * * * *
1027486 GCACGTAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACAGAGCACT
66 GCACGTAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTAGCTCTCCGGCCGACTGAGCGCC
* * *
1027551 CGCACGCCCGTTTCGTGGGTTGGCTTAT
131 CACACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
1027579 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCGG-CCAGATCGAGGGTTGTGGTAGCGGGACCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCAA
* * * * * *
1027642 CAGCACGTAGAGGGGGATCGGGCTGATCCCCAACTTACGCATTAT-GCCTCTCCAGCC-AGCTCA
64 CAGCACGTAG-GGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTAG-CTCTCCGGCCGA-CTGA
* * ** **
1027705 GTGCCCGA-ACGCTCATTTCACGGGTTGAATTAG
126 GCGCCC-ACACGCTCGTTTCGTGGGTTGGCTTAG
* **
1027738 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCAACA
* * * *
1027803 GCACGCAGGGGGGACCGGGCATG-TCCCCAGCTTGTGCATTCTAGCTCTCTGGCCGATTGAGCGC
66 GCACGTAGGGGGGACCGGGC-TGATCCCCAGCTTGCGCATTCTAGCTCTCCGGCCGACTGAGCGC
1027867 CCACACGCTCGTTTCGTGGGTTGGCTTAG
130 CCACACGCTCGTTTCGTGGGTTGGCTTAG
* *
1027896 GCGTACGGAGTTCAGT-CCATGTCTAAGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGA
1027924 ATACGGAGTT
Statistics
Matches: 262, Mismatches: 70, Indels: 26
0.73 0.20 0.07
Matches are distributed among these distances:
157 7 0.03
158 135 0.52
159 117 0.45
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCAACA
GCACGTAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTAGCTCTCCGGCCGACTGAGCGCC
CACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:1027949 original size:26 final size:26
Alignment explanation
Indices: 1027899--1027949 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
1027889 GGCTTAGGCG
*
1027899 TACGGAGTTCAGTCCATGTCTAAGAA
1 TACGGAGTTCAGTCCATGTCCAAGAA
*
1027925 TACGGAGTTCATTCCCA-GTCCAAGA
1 TACGGAGTTCAGT-CCATGTCCAAGA
1027950 TCGGATCGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (26 bp):
TACGGAGTTCAGTCCATGTCCAAGAA
Found at i:1028137 original size:26 final size:26
Alignment explanation
Indices: 1028106--1028158 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1028096 GTTAACTTAG
* * *
1028106 GCATACGGAGTTCATCCCCCGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
*
1028132 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
1028158 G
1 G
1028159 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:1028485 original size:26 final size:26
Alignment explanation
Indices: 1028449--1028500 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1028439 ATTGGCTTAG
1028449 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
1028475 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
1028501 CAGTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:1028765 original size:26 final size:26
Alignment explanation
Indices: 1028735--1028784 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1028725 TGACTTAGGC
1028735 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
*
1028761 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATCCCCAGTCTAA
1028785 AATCGAACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGA
Found at i:1029286 original size:26 final size:26
Alignment explanation
Indices: 1029256--1029308 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1029246 GTTGATTTAG
*
1029256 GCATACGGAGTTCA-TCCACAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
*
1029282 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1029308 G
1 G
1029309 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1029757 original size:26 final size:26
Alignment explanation
Indices: 1029727--1029779 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1029717 GTTGGCTTAG
1029727 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
1029753 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
1029779 G
1 G
1029780 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:1033230 original size:26 final size:26
Alignment explanation
Indices: 1033200--1033252 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1033190 GTTGGCTTAG
*
1033200 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCAT-TCTAA
1033226 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCATTCTAA
1033252 G
1 G
1033253 GTTTTGAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCATTCTAA
Found at i:1033952 original size:26 final size:26
Alignment explanation
Indices: 1033922--1033974 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1033912 GTTGACATAG
1033922 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCA-TCTAA
*
1033948 GCATATGGAGTTCATTCCCCATCTAA
1 GCATACGGAGTTCATTCCCCATCTAA
1033974 G
1 G
1033975 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCCATCTAA
Found at i:1041045 original size:26 final size:26
Alignment explanation
Indices: 1041008--1041060 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1040998 GTTGACTTAG
*
1041008 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
1041034 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
1041060 G
1 G
1041061 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:1041393 original size:159 final size:157
Alignment explanation
Indices: 1041034--1041535 Score: 498
Period size: 159 Copynumber: 3.2 Consensus size: 157
1041024 CCCAATCTAA
* *
1041034 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACTGAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACT-GGACCGAGGGTTGCGGTAGCAGGATCGA
* * * * * * * *
1041097 CAGAACGTAGGGGTGACCGAGCCAATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAACG
64 CAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGT-GGCTCAACG
* ** *
1041162 CCCGCACG-CCCGTTTGCGGGTTGGCTTAG
128 CCCGCACGTTCATTTTGTGGGTTGGCTTAG
* * ** ** * * * *
1041191 GCATAGGGAGTTCCTTCCATGTCTAAGCCCCAACTGAACCGAGGGTTGTGGTAGCGGGA-CTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATC-GAC
*
1041255 AGCACGCAGAGGGGGACCGGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGGCTGGCTCAACG
65 AGCACGCAG-GGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGG-TGGCTCAACG
*
1041320 CCCGCACGTTCATTTTGTGGGTTGACTTAG
128 CCCGCACGTTCATTTTGTGGGTTGGCTTAG
* * *
1041350 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACTGGACCGAGGGTTGCAGTAGCAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * *
1041414 AGCACGCAGGGGTGGACCGGACCGATCCCC-AGCTTGCGCATTCTGCCTCTCCGGTTGGC-CGAG
65 AGCACGCAGGGG-GGACCGGGCCAATCCCCGA-CTTGCGCATTCTGCCTCTCCGG-TGGCTC-AA
* * * **
1041477 TGCCTGCACGCTT-GTTTCATGGGTTGGCTTAG
126 CGCCCGCACG-TTCATTTTGTGGGTTGGCTTAG
*
1041509 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
1041536 CATACGGAGT
Statistics
Matches: 281, Mismatches: 51, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
156 4 0.01
157 51 0.18
158 63 0.22
159 157 0.56
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTGGCTCAACGCCC
GCACGTTCATTTTGTGGGTTGGCTTAG
Found at i:1041697 original size:184 final size:185
Alignment explanation
Indices: 1041350--1041720 Score: 494
Period size: 184 Copynumber: 2.0 Consensus size: 185
1041340 GTTGACTTAG
* * *
1041350 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAAGATCGACA
* * *
1041415 GCACGCAGGGGTGGACCGGACCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTTGGCCGAGTGC
66 GCACGCAGGGGTGGACCAGACCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTTGGCCAAGCGC
* *
1041480 CTGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
131 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * ** * * *
1041535 GCATACGGAGTTCATTCCCAGTCTACGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAAGATCGACA
* *** * *
1041600 GCACGCAGGGG-GGACCA-AGTCGATCCTTGGCTTGCGCATTCTGCCTCTTCGGTTGGCTAAGCG
66 GCACGCAGGGGTGGACCAGA-CCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTTGGCCAAGCG
* * * *
1041663 CCCGTAGGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
1041719 GC
1 GC
1041721 CCCAATCGGA
Statistics
Matches: 160, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
183 1 0.01
184 93 0.58
185 66 0.41
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAAGATCGACA
GCACGCAGGGGTGGACCAGACCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTTGGCCAAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:1042622 original size:26 final size:26
Alignment explanation
Indices: 1042586--1042638 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1042576 GTTGGCTTAG
1042586 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1042612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1042638 G
1 G
1042639 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1042973 original size:159 final size:158
Alignment explanation
Indices: 1042652--1043104 Score: 351
Period size: 159 Copynumber: 2.9 Consensus size: 158
1042642 AGACCGGACT
* * * * * * *
1042652 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGAGGGA-CAGGGCCGTTCCTCAGCTTGCGCAT
1 GAGGGTTACGGCAGCAGGACCGACAGCACGCAGGGGGGATC-GGGTCGATCCCCAGCTTGCACAT
* * ** * * * * * * * ***
1042716 TCTGCCTTTCCGGTCGACTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
65 TCAGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCCATACAAAGT
* ***** ** *
1042781 TCATTCC-ATGTCTAAGCCCCAACTGGACT
130 TCATTCCTA-GTCAAATATTGAACCAGACC
** * * * **
1042810 GAGGGTTGTGGCAGCGGGACC-AGCAGCACGCAGAGGGGTATTGGGTCGAT-CCCAGGCTTGTGC
1 GAGGGTTACGGCAGCAGGACCGA-CAGCACGCAG-GGGGGATCGGGTCGATCCCCA-GCTTGCAC
* * *
1042873 ATT-AGCCCTCTCC-AGTCGGCTCAGCGCCCGCTCGCTCGTTTCATGGGTTGACTTAGCCATACG
63 ATTCAG-CCTCTCCGA-CCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCCATACA
*
1042936 GAGTTCATTCCTAGTCAAATATTGAACCAGACC
126 AAGTTCATTCCTAGTCAAATATTGAACCAGACC
* * *
1042969 GAGGGTTACGGTAGCAGGATCGACAGCACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCACATT
1 GAGGGTTACGGCAGCAGGACCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCACATT
* * * * * *
1043034 CTGCCTCTCCGACCGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAAAGTT
66 CAGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCCATACAAAGTT
1043099 CATTCC
131 CATTCC
1043105 ATGTCTAAGC
Statistics
Matches: 233, Mismatches: 51, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 112 0.48
159 118 0.51
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGGGTTACGGCAGCAGGACCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCACATT
CAGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCCATACAAAGTT
CATTCCTAGTCAAATATTGAACCAGACC
Found at i:1043086 original size:158 final size:156
Alignment explanation
Indices: 1042612--1043113 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 156
1042602 CCCAGTCTAA
1042612 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCA-ACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
1042677 GCACGCAGGAGGGA-CAGGGCCGTTCCTCAGCTTGCGCATTCTGCCTTTCCGGTCGACTGAGTGC
64 GCACGCAGGGGGGATC-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* *
1042741 CCGCACACCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * *
1042770 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACTGAGGGTTGTGGCAGCGGGA-CCAGC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAACCGGACTGAGGGTTGCGGCAGCAGGATCGA-C
* * * * *
1042834 AGCACGCAGAGGGGTATTGGGTCGAT-CCCAGGCTTGTGCATT-AGCCCTCTCC-AGTCGGCTCA
63 AGCACGCAG-GGGGGATCGGGTCGATCCCCA-GCTTGCGCATTCTG-CCTCTCCGA-TCGGCTGA
* *
1042896 GCGCCCGCTCGCTCGTTTCATGGGTTGACTTAG
124 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * * *
1042929 CCATACGGAGTTCATTCCTAGTCAAATATTGAACCAGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGA-TCAACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * *
1042994 GCACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCC
64 GCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* *
1043059 TGCACGCTTGTTTCATGGGTTGGCTTAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAG
**
1043087 GCATACAAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
1043114 CATACGGACT
Statistics
Matches: 273, Mismatches: 56, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
157 6 0.02
158 145 0.53
159 119 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGC
ACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:1043497 original size:26 final size:26
Alignment explanation
Indices: 1043468--1043520 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1043458 GTTGACTTAG
*
1043468 GCATACGGATTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1043494 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1043520 G
1 G
1043521 ATCAGATTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1043954 original size:158 final size:157
Alignment explanation
Indices: 1043494--1043995 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 157
1043484 CCCAGTCTAA
* * * *
1043494 GCATACGGAGTTCATTCTCAGTCTAAGATCAGAT-TAGACCAAGGGTTGCGACAGCAAGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGAACAGATCT-GACCGAGGGTTGCG-CAGCAAGATCGAT
* * * * * * * *
1043558 AGCACGCAGAGGGGATCGGGTCGATCTCCAACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCAC
64 AGCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGC
* * *
1043623 CCGCACGCCCGTTTCATGGCTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * ** *
1043652 GCATAGGGAGATCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-AACAGATCTGACCGAGGGTTG-CGCAGCAAGATCGA
* * * * * * * *
1043715 CAGCACGTAGAGGGGGA-CTGGGCTGATCCCCGGCTTGTGCGTTATGCCTCTTTGGCCAGCTCAG
63 TAGCACGTAG-GGGGGATC-GGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAG
* * * *
1043779 CGTCCGGACGCTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * *
1043811 GCATACATAGTTCATTCCCAGTCTTAGAACAGATCTGACTGAGGGTTACAGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGAACAGATCTGACCGAGGGTTGC-GCAGCAAGATCGATA
*
1043876 GCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
65 GCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
1043941 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
1043969 GCATGCGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
1043996 CATACGGTGT
Statistics
Matches: 267, Mismatches: 66, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 5 0.02
158 143 0.54
159 116 0.43
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAACAGATCTGACCGAGGGTTGCGCAGCAAGATCGATAG
CACGTAGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:1044007 original size:26 final size:26
Alignment explanation
Indices: 1043969--1044021 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1043959 GTTGGCTTAG
*
1043969 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
1043995 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1044021 G
1 G
1044022 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1044720 original size:26 final size:26
Alignment explanation
Indices: 1044691--1044743 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1044681 GTTGACTTAG
*
1044691 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
1044717 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1044743 G
1 G
1044744 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1045078 original size:159 final size:157
Alignment explanation
Indices: 1044717--1045079 Score: 356
Period size: 159 Copynumber: 2.3 Consensus size: 157
1044707 CCTAGTCTAA
* * * * * * *
1044717 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGGAGCAGCAGGATAGACA
*** * * * * *
1044782 GCATGTAAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGCCGGCTGAGATCCC
66 GCACACAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGCCGGCTCAGAGCCC
* **
1044847 GTACACCCATTTCATGGGTTGGCTTAG
131 GCACACCCATTTCATGGGTTAACTTAG
* ** * *** * *
1044874 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCTGG-TCGGATTAAGGGTTGGGGCAGCGGGAGTAG
1 GCATACGGAGTTCATTTCCA-GTCTAAGATC-GGACCGGACCGAGGGTTGGAGCAGCAGGA-TAG
*
1044937 -CAGCACACAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCA-
63 ACAGCACACA-AGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCG-CCGGCTCAG
* * *
1045000 ACGCCCGCACGCTCATTTCGTGGGTTAACTTAG
126 A-GCCCGCACACCCATTTCATGGGTTAACTTAG
*
1045033 GCATACGGAGTTCATTTCCAGTCTAATATCGGACCGGACCGAGGGTT
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTT
1045080 ACGTAGTAGG
Statistics
Matches: 159, Mismatches: 39, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
156 4 0.03
157 43 0.27
158 47 0.30
159 60 0.38
160 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGGAGCAGCAGGATAGACA
GCACACAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGCCGGCTCAGAGCCC
GCACACCCATTTCATGGGTTAACTTAG
Found at i:1045219 original size:26 final size:26
Alignment explanation
Indices: 1045190--1045242 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1045180 GTTGGCTTAG
*
1045190 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
1045216 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1045242 G
1 G
1045243 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1046338 original size:26 final size:26
Alignment explanation
Indices: 1046302--1046354 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1046292 GTTGGCTTAG
1046302 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
1046328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1046354 G
1 G
1046355 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1046676 original size:355 final size:354
Alignment explanation
Indices: 1046110--1046775 Score: 931
Period size: 355 Copynumber: 1.9 Consensus size: 354
1046100 TGACCGGCTC
* ** * *
1046110 AGCGCTCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCCGTCTAAGATCG
1 AGCGCCCGCACACTCATTTAATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
* ** * * * * *
1046175 GACCGGACTGTGGGTTGTGGCTGCAGGATCGATAGCACGCAGGAGGAATCAGGCTAGTCCCCGGC
66 GACCGAACTAAGGGTTGTGGCAGCAGGATCAACAGCACGCAGGAGGAATCAGGCCAATCCCCGGC
* * *
1046240 TTGCACACTCTGCCTCTCCGGCTGGCTGAGCGCCTGCACACTCGTTTCGTGGGTTGGCTTAGGCA
131 TTACACACTCTGCCTCTCCGGCTGGCTGAGCACCTGCACACTCGTTTCATGGGTTGGCTTAGGCA
* * * *
1046305 TACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA
196 TACAAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACGGGACCGA
* **
1046370 GGGTTGCCGCAGTAGGACCAGC-AGTAAGATCGACAACACGTAGGAGGGATCAGACCGATCACCG
261 GGGTTACAACAGTAGGACCA-CTAGTAAGATCGACAACACGTAGGAGGGATCAGACCGATCACCG
1046434 ACTTGGGCATTCTCTCTCTCCGGTCAACTG
325 ACTTGGGCATTCTCTCTCTCCGGTCAACTG
*
1046464 AGCGCCCGCACGCTCATTTAATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
1 AGCGCCCGCACACTCATTTAATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * * **
1046529 GACTGAACTAAGGGTTGCT-GCAGTAGGATCAACAGCACGCAGGGGGTGATGGGGCCAATCCCCG
66 GACCGAACTAAGGGTTG-TGGCAGCAGGATCAACAGCACGCAGGAGG-AATCAGGCCAATCCCCG
* * * *
1046593 GCTTACGCATTCTGCCTCTCCGGCTGGTTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGG
129 GCTTACACACTCTGCCTCTCCGGCTGGCTGAGCACCTGCACACTCGTTTCATGGGTTGGCTTAGG
* *
1046658 CATACAAAGTTTATTCCATGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACGGGACC
194 CATACAAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACGGGACC
* * * *
1046723 GAGGGTTACAACAGTAGGACTACTAGTAGGATCGACAGCACGTAGGGGGGATC
259 GAGGGTTACAACAGTAGGACCACTAGTAAGATCGACAACACGTAGGAGGGATC
1046776 GGGTTGATCC
Statistics
Matches: 269, Mismatches: 40, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
354 95 0.35
355 174 0.65
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (354 bp):
AGCGCCCGCACACTCATTTAATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
GACCGAACTAAGGGTTGTGGCAGCAGGATCAACAGCACGCAGGAGGAATCAGGCCAATCCCCGGC
TTACACACTCTGCCTCTCCGGCTGGCTGAGCACCTGCACACTCGTTTCATGGGTTGGCTTAGGCA
TACAAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACGGGACCGA
GGGTTACAACAGTAGGACCACTAGTAAGATCGACAACACGTAGGAGGGATCAGACCGATCACCGA
CTTGGGCATTCTCTCTCTCCGGTCAACTG
Found at i:1046686 original size:26 final size:26
Alignment explanation
Indices: 1046657--1046709 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1046647 GTTGGCTTAG
*
1046657 GCATACAAAGTTTATTCC-ATGTCTAA
1 GCATACAAAGTTCATTCCTA-GTCTAA
*
1046683 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
1046709 G
1 G
1046710 ATCAGACGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:1046845 original size:355 final size:354
Alignment explanation
Indices: 1046122--1046868 Score: 899
Period size: 355 Copynumber: 2.1 Consensus size: 354
1046112 CGCTCGCACA
* * * * **
1046122 CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCCGTCTAAGATCGGACCGGACTGTG
1 CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAG
* * * * * *
1046187 GGTTGTGGCTGCAGGATCGATAGCACGCAGGAGGAATCAGGCTAGTCCCCGGCTTGCACACTCTG
66 GGTTGTGGCAGCAGGATCAACAGCACGCAGGAGGAATCAGGCCAATCCCCGGCTTACACACTCTG
* * *
1046252 CCTCTCCGGCTGGCTGAGCGCCTGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT
131 CCTCTCCGGCTGGCTGAGCACCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCAT
* * * * **
1046317 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCCGCAG
196 TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACGGGACCGAGGGTTACAACAG
**
1046382 TAGGACCAGCAGTAAGATCGACAACACGTAGGAGGGATCAGACCGATCACCGACTTGGGCATTCT
261 TAGGACCAGCAGTAAGATCGACAACACGTAGGAGGGATCAGACCGATCACCGACTTACGCATTCT
* *
1046447 CTCTCTCCGGTCAACTGAGCGCCCGCACG
326 CTCTCTCCGGTCAACTGAACGCCCACACG
* *
1046476 CTCATTTAATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGAACTAAG
1 CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAG
* * * ** * *
1046541 GGTTGCT-GCAGTAGGATCAACAGCACGCAGGGGGTGATGGGGCCAATCCCCGGCTTACGCATTC
66 GGTTG-TGGCAGCAGGATCAACAGCACGCAGGAGG-AATCAGGCCAATCCCCGGCTTACACACTC
* * *
1046605 TGCCTCTCCGGCTGGTTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTT
129 TGCCTCTCCGGCTGGCTGAGCACCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTC
*
1046670 ATTCCATGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACGGGACCGAGGGTTACAAC
194 ATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACGGGACCGAGGGTTACAAC
* * * * * *** * * **
1046735 AGTAGGACTA-CTAGTAGGATCGACAGCACGTAGGGGGGATCGGGTTGATCCCCGGCTTACTTAT
259 AGTAGGACCAGC-AGTAAGATCGACAACACGTAGGAGGGATCAGACCGATCACCGACTTACGCAT
** **
1046799 TCTGCT-TCTTTGG-CTGGCTGAACGCCCACACG
323 TCT-CTCTCTCCGGTC-AACTGAACGCCCACACG
** * *
1046831 CTTGTTTCATGGGTTGGCTTAGGCATACAGAGTCCATT
1 CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATT
1046869 ACATGTCTAA
Statistics
Matches: 329, Mismatches: 59, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
354 86 0.26
355 241 0.73
356 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (354 bp):
CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAG
GGTTGTGGCAGCAGGATCAACAGCACGCAGGAGGAATCAGGCCAATCCCCGGCTTACACACTCTG
CCTCTCCGGCTGGCTGAGCACCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCAT
TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACGGGACCGAGGGTTACAACAG
TAGGACCAGCAGTAAGATCGACAACACGTAGGAGGGATCAGACCGATCACCGACTTACGCATTCT
CTCTCTCCGGTCAACTGAACGCCCACACG
Found at i:1048437 original size:26 final size:26
Alignment explanation
Indices: 1048401--1048453 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1048391 GTTGGCTTAG
1048401 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
1048427 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1048453 G
1 G
1048454 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:1048758 original size:355 final size:352
Alignment explanation
Indices: 1048226--1048882 Score: 852
Period size: 355 Copynumber: 1.9 Consensus size: 352
1048216 CGAACACTCA
* * * *
1048226 TTTCATGGATTGACTTAGGCATACGGAGTTCATTCTAGTCTAAGATCGGACCAGACTGTGGGTTG
1 TTTCATGGATTGACATAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTG
*** * * *
1048291 CAGCTACAAGATCGGTAGCACGCAGGAGGGACCGGGCTAGTCCCCGGCTTGCGCATTCTGTCTCT
66 CAGCTACAAGATCAACAGCACGCAGGAGGGACCGGGCCAGTCCCCGGCTTACGCATTCTGCCTCT
* * * * *** *
1048356 CCAACTGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCAT
131 CCAACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAATTCATTCCAT
* * ** *
1048421 GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-CTAGACTGAGGGTTGTGGCAGCAGG
196 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTACGACAGCAGG
*
1048485 ACCAA-CAGCAGGATCGACAGCACGCAGTGGGGATCGAGTCGATCACTGGCTTGCGCATTCTTGC
260 A-CAAGCAGCAGGATCGACAGCACGCAG-GGGGATCGAGCCGATCACTGGCTTGCGCATTCTTGC
1048549 TCTCCGTTCGACTGAGCCCTCGCACGCTCG
323 TCTCCGTTCGACTGAGCCCTCGCACGCTCG
* * *
1048579 TTTCGTGGGTTGACATAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
1 TTTCATGGATTGACATAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTT
* * * * ** * *
1048644 GCTG-TAGCAGGATCAACAGCATGCAGGGGGTGATGGGGCCAGTCCCTGGCTTATGCATTCTGCC
65 GCAGCTA-CAAGATCAACAGCACGCAGGAGG-GACCGGGCCAGTCCCCGGCTTACGCATTCTGCC
* *
1048708 TCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAATTTATTC
128 TCTCCAACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAATTCATTC
* ** *
1048773 CATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTACGACAGCA
193 CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGCA
* *
1048838 GGACAAGCAGTAGGATCGACAGCATGCAGGGGGATCGAGCCGATC
258 GGACAAGCAGCAGGATCGACAGCACGCAGGGGGATCGAGCCGATC
1048883 CCCGACTTGC
Statistics
Matches: 256, Mismatches: 43, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
353 32 0.12
354 65 0.25
355 158 0.62
356 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (352 bp):
TTTCATGGATTGACATAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTG
CAGCTACAAGATCAACAGCACGCAGGAGGGACCGGGCCAGTCCCCGGCTTACGCATTCTGCCTCT
CCAACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAATTCATTCCAT
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGCAGGA
CAAGCAGCAGGATCGACAGCACGCAGGGGGATCGAGCCGATCACTGGCTTGCGCATTCTTGCTCT
CCGTTCGACTGAGCCCTCGCACGCTCG
Found at i:1049357 original size:184 final size:185
Alignment explanation
Indices: 1049014--1049360 Score: 466
Period size: 184 Copynumber: 1.9 Consensus size: 185
1049004 GTAGGACCGA
* * * * * *
1049014 TAGTGGGATCGATAGCACACAGAGAGGGATTGGGCCGATCCCCGGCCTACACATTATGCCTCTCT
1 TAGTAGGATCGACAGCACACAGAGAGGGATCGGGCCGATCCCCGACCTACACATGATGCCTCTCC
* * *
1049079 GACTGGCTGATCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCCTCCCCAGT
66 GACTGGCTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCAAGT
**
1049144 CTAAGCATATTGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
131 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* *
1049199 TAGTAGGATCGACAGCACACAG-G-GGAGATCGGGCCGATCCCCGACTTACACATGCTGCCTCTC
1 TAGTAGGATCGACAGCACACAGAGAGG-GATCGGGCCGATCCCCGACCTACACATGATGCCTCTC
* * * * * * *
1049262 CGATTGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCAAT
65 CGACTGGCTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCAA-
*
1049326 GTCTAAGCATACAGAGTTCATTCCTAGTCTAAGAT
129 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
1049361 TTTGAGCCAC
Statistics
Matches: 139, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
183 4 0.03
184 115 0.83
185 20 0.14
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (185 bp):
TAGTAGGATCGACAGCACACAGAGAGGGATCGGGCCGATCCCCGACCTACACATGATGCCTCTCC
GACTGGCTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCAAGT
CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
Found at i:1050024 original size:26 final size:26
Alignment explanation
Indices: 1049994--1050046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1049984 GTTGACTTAG
*
1049994 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1050020 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1050046 G
1 G
1050047 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1050921 original size:159 final size:159
Alignment explanation
Indices: 1050673--1051064 Score: 366
Period size: 159 Copynumber: 2.5 Consensus size: 159
1050663 TCTGCATCTC
* * * *
1050673 CGATCGGCTGAGAGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
1 CGATCGGCTCAGAGCCCGCACGCCCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
* ** * *
1050738 TCTAAGCCTCAGCCAAACTGAGGGTTATGGCAGCGGGATCGACAGCACACAGAGG-GGGACCGGG
66 TCTAAGCATCAGCCAAACCAAGGGTTACGGCAGCAGGATCGACAGCACACA-AGGAGGGACCGGG
1050802 ATGATCCTTGGCTTGCATATTTTGCCTTTT
130 ATGATCCTTGGCTTGCATATTTTGCCTTTT
* * *
1050832 CGATCGGCTCAGCGCCCGTACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-
1 CGATCGGCTCAGAGCCCGCACGCCCGTTACATGGGTTGACTTAGGCATACGGAGTTCATT-CCAT
* ** * * *
1050896 GTCTAAG-ATCGGACCGGACCAAGGGTTACGGTAGCAGGATTGATAGCACACAAGGAGGGACCGG
65 GTCTAAGCATCAG-CCAAACCAAGGGTTACGGCAGCAGGATCGACAGCACACAAGGAGGGACCGG
* * * *
1050960 GCCA-G-TCCCTGACTT--ATGCATTCTGCCTCTT
129 G--ATGATCCTTGGCTTGCAT--ATTTTGCCTTTT
* * * * * * * * * * * *
1050991 CGACCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGCCTTACGCATATGGAGTTCATTACATG
1 CGATCGGCTCAGAGCCCGCACGCCCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
1051056 TCTAAGCAT
66 TCTAAGCAT
1051065 ACGAAGTTCA
Statistics
Matches: 191, Mismatches: 33, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 8 0.04
159 174 0.91
160 6 0.03
161 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
CGATCGGCTCAGAGCCCGCACGCCCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
TCTAAGCATCAGCCAAACCAAGGGTTACGGCAGCAGGATCGACAGCACACAAGGAGGGACCGGGA
TGATCCTTGGCTTGCATATTTTGCCTTTT
Found at i:1050937 original size:539 final size:539
Alignment explanation
Indices: 1049910--1050937 Score: 1285
Period size: 539 Copynumber: 1.9 Consensus size: 539
1049900 TGAACCCACC
* * *
1049910 TACCACCCGTTCGATTCTCGGCTTGTGCATCCTGCCTTTCTAGTCGGCTGAGCGTCCGCACGCTT
1 TACCACCCGTTCGATTCTCGGCTTGCGCATCCTACCTTTCTAGTCGGCTGAGCGTCCGCACGCTC
* * *
1049975 GTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
66 GTTTCATGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCACA
* * * * ** * *
1050040 GTCTAAGATCGGATCGGATGGAGGGTTACGACAGTAGGATCGACAGCACATAAAGGGGCCCGGGC
131 ATCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGACAGCACATAAAGGGGACCAGGC
* * * *** * *
1050105 CAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGTTGGCATGCTCATTTCATGGGT
196 CAATCCCCGACTTGCGCATTCTGCATCTCCGACCGACTGAGAGCCCGCACGCCCATTTCATGGGT
* ** *
1050170 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTCGCGG
261 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAATCGAGGGTTATGGTCGCGG
** **
1050235 GACCGACAGCATGCAAAGGGGGACCGGTCCAATCCCCAGCTTGCAAATTATGCCTCTCCAATCGA
326 GACCGACAGCACACAAAGGGGGACCGGGACAATCCCCAGCTTGCAAATTATGCCTCTCCAATCGA
* * *
1050300 CTCAACACCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGA
391 CTCAACACCCACACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGA
* * * *
1050365 TCGGATCGGACCGAGGGTTGCGGTAGTAGGATTGGATTGAGAGTTGGATTAGGCATACGGAGTCC
456 TCGGACCGGACCAAGGGTTACGGTAGCAGGATTGGATTGAGAGTTGGATTAGGCATACGGAGTCC
1050430 ATTCCATGTCTAACCCATT
521 ATTCCATGTCTAACCCATT
* *
1050449 TACCACCCGTTCGA-TCTCGGGCTTGCGCATCCTACCTCTT-TGGTCGGTTGAGCG-CCTGCACG
1 TACCACCCGTTCGATTCTC-GGCTTGCGCATCCTACCT-TTCTAGTCGGCTGAGCGTCC-GCACG
* * * * *
1050511 CTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATCGCTAGTCTAAGCATATGGATTTCATTC
63 CTCGTTTCATGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * * * **
1050576 ACAATCTAAGATTAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGGACGA-AGGGGGGACC
128 ACAATCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGACAGCAC-ATAAAGGGGACC
* * * * * *
1050640 AGGTCGATCCCCGGCTTGCGCATTCTGCATCTCCGATCGGCTGAGAGCCCGCACGCCCGTTTCAT
192 AGGCCAATCCCCGACTTGCGCATTCTGCATCTCCGACCGACTGAGAGCCCGCACGCCCATTTCAT
*
1050705 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCCAAA-CTGAGGGTTATGG-
257 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAATC-GAGGGTTATGGT
* * ** *** * * * *
1050768 CAGCGGGATCGACAGCACACAGAGGGGGACCGGGATGATCCTTGGCTTGCATATTTTGCCTTTTC
321 C-GCGGGACCGACAGCACACAAAGGGGGACCGGGACAATCCCCAGCTTGCAAATTATGCCTCTCC
* * * * ** *
1050833 GATCGGCTCAGCGCCCGTACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
385 AATCGACTCAACACCCACACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
1050898 CTAAGATCGGACCGGACCAAGGGTTACGGTAGCAGGATTG
450 CTAAGATCGGACCGGACCAAGGGTTACGGTAGCAGGATTG
1050938 ATAGCACACA
Statistics
Matches: 408, Mismatches: 75, Indels: 12
0.82 0.15 0.02
Matches are distributed among these distances:
538 8 0.02
539 397 0.97
540 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (539 bp):
TACCACCCGTTCGATTCTCGGCTTGCGCATCCTACCTTTCTAGTCGGCTGAGCGTCCGCACGCTC
GTTTCATGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCACA
ATCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGACAGCACATAAAGGGGACCAGGC
CAATCCCCGACTTGCGCATTCTGCATCTCCGACCGACTGAGAGCCCGCACGCCCATTTCATGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAATCGAGGGTTATGGTCGCGG
GACCGACAGCACACAAAGGGGGACCGGGACAATCCCCAGCTTGCAAATTATGCCTCTCCAATCGA
CTCAACACCCACACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGA
TCGGACCGGACCAAGGGTTACGGTAGCAGGATTGGATTGAGAGTTGGATTAGGCATACGGAGTCC
ATTCCATGTCTAACCCATT
Found at i:1051207 original size:184 final size:185
Alignment explanation
Indices: 1050876--1051246 Score: 467
Period size: 184 Copynumber: 2.0 Consensus size: 185
1050866 GTTGACTTAG
* * *
1050876 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCAGGATTGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATCGATA
* * * *
1050941 GCACACAAGGAGGGACCGGGCCAGTCCCTGACTTATGCATTCTGCCTCTTCGACCGGCTGAGCGC
66 GCACACAAGGAGGGACCGGGCCAGTCCCCGACTTACGCATTCTACCTCTTCGACCAGCTGAGCGC
** *
1051006 CTGCACGCTCATTTCGTGGGTTGCCTTACGCATATGGAGTTCATTACATGTCTAA
131 CCACACGCTCATTTCGTGGGTTGCCTTACGCATACGGAGTTCATTACATGTCTAA
* * * * * ** *
1051061 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGTTAGTGGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATCGATA
* * * * *
1051126 GCACGCAAGG-GGGATCGGGCC-GATCCCCGGCTTGCGCATTCTACCTCTTCGACCAGCTGAGTG
66 GCACACAAGGAGGGACCGGGCCAG-TCCCCGACTTACGCATTCTACCTCTTCGACCAGCTGAGCG
* * * * *
1051189 CCCACACGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCCACACGCTCATTTCGTGGGTTGCCTTACGCATACGGAGTTCATTACATGTCTAA
1051245 GC
1 GC
1051247 CCCAGCCGAA
Statistics
Matches: 157, Mismatches: 28, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
183 1 0.01
184 93 0.59
185 63 0.40
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (185 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATCGATA
GCACACAAGGAGGGACCGGGCCAGTCCCCGACTTACGCATTCTACCTCTTCGACCAGCTGAGCGC
CCACACGCTCATTTCGTGGGTTGCCTTACGCATACGGAGTTCATTACATGTCTAA
Found at i:1052641 original size:26 final size:26
Alignment explanation
Indices: 1052611--1052660 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1052601 GTTGACTTAG
*
1052611 GCATACGGAGTTCATCCCCAGTCTGA
1 GCATACAGAGTTCATCCCCAGTCTGA
* *
1052637 GCATACAGAGTTCATTCCTAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
1052661 AAGATAGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTGA
Found at i:1052991 original size:26 final size:26
Alignment explanation
Indices: 1052952--1053004 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1052942 GTAGGCTTAG
1052952 GCATACGGAATTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
*
1052978 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
1053004 G
1 G
1053005 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:1053351 original size:26 final size:26
Alignment explanation
Indices: 1053321--1053371 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1053311 TGACTTAGGC
*
1053321 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
*
1053347 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
1053372 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:1053475 original size:26 final size:26
Alignment explanation
Indices: 1053439--1053489 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1053429 TGACTTAGGC
1053439 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
1053465 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
1053490 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:1053479 original size:118 final size:118
Alignment explanation
Indices: 1053271--1053505 Score: 434
Period size: 118 Copynumber: 2.0 Consensus size: 118
1053261 GTATTATGCC
*
1053271 TCTCCGACCCACTGAGCGCCCCCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
1 TCTCCGACCCACTGAGCGCCCCCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATCC
1053336 CCAGTCTAAGTATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGT
66 CCAGTCTAAGTATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGT
*
1053389 TCTCCGACCGACTGAGCGCCCCCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATCC
1 TCTCCGACCCACTGAGCGCCCCCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATCC
* *
1053454 CCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAG
66 CCAGTCTAAGTATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAG
1053506 GGTTGCGGCA
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 113 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (118 bp):
TCTCCGACCCACTGAGCGCCCCCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATCC
CCAGTCTAAGTATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGT
Found at i:1053928 original size:158 final size:155
Alignment explanation
Indices: 1053465--1053964 Score: 497
Period size: 158 Copynumber: 3.2 Consensus size: 155
1053455 CAGTCTAAGT
* **
1053465 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCGGCAGCAGGATC-AGTAG
1 ATACGGAGTTCATT-CCAGTCTAAGATCAGACAG-ACTGAGGGTTGCTACAGCAGGATCGA-TAG
* * * * * *
1053529 CACGCAGGGTGGATCGAACTGATCCCCAGCTTACGCATTCTACCTCTTCGATCGGTTGAGCACCC
63 CACGCAGGG-GGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGTTGAGCACCC
* * *
1053594 GCACACCCGTTTCGTGGGTTGGCTTAGGC
127 GTACACTCGTTTAGTGGGTTGGCTTAGGC
* ** * * *
1053623 ATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGGACTGAGGGTTG-TGACAGCGGGATCGGTA
1 ATACGGAGTTCATTCCA-GTCTAAG-ATCAGAC-AGACTGAGGGTTGCT-ACAGCAGGATCGATA
* * ** * * * * *
1053686 GCATGCAAAGGGGGATC-AGACCGATCCCTGGCTTGTGCATTATGCCTCTCCGACCAGCTCAGCG
62 GCACGC--AGGGGGATCGAG-CCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGTTGAGCA
*
1053750 CCCGTACACTCGTTTAGTGGGTT-GATTGAGGC
124 CCCGTACACTCGTTTAGTGGGTTGGCTT-AGGC
* * * * *
1053782 ATACAGAGTTCATTCTCAGTCTTAGATCGGATCAGACCGAGGGTTGCTACAGCAGGATCGACAGC
1 ATACGGAGTTCATTC-CAGTCTAAGATCAGA-CAGACTGAGGGTTGCTACAGCAGGATCGATAGC
1053847 ACGCAGGGAGGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGTTGAGCACCCG
64 ACGCAGGG-GGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGTTGAGCACCCG
* * *
1053912 TACGCTCATTTTGTGGGTTGGCTTAGGC
128 TACACTCGTTTAGTGGGTTGGCTTAGGC
1053940 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCA-GTCTAAG
1053965 CATACGGAGT
Statistics
Matches: 272, Mismatches: 53, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
157 9 0.03
158 139 0.51
159 116 0.43
160 8 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (155 bp):
ATACGGAGTTCATTCCAGTCTAAGATCAGACAGACTGAGGGTTGCTACAGCAGGATCGATAGCAC
GCAGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGTTGAGCACCCGTAC
ACTCGTTTAGTGGGTTGGCTTAGGC
Found at i:1053967 original size:26 final size:26
Alignment explanation
Indices: 1053938--1053990 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1053928 GTTGGCTTAG
1053938 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
1053964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1053990 G
1 G
1053991 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1054848 original size:26 final size:26
Alignment explanation
Indices: 1054819--1054871 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1054809 GTTGGCTTAG
* *
1054819 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1054845 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1054871 G
1 G
1054872 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1056566 original size:26 final size:26
Alignment explanation
Indices: 1056529--1056581 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
1056519 GTTGGCTTAG
1056529 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
1056555 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
1056581 G
1 G
1056582 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1058003 original size:127 final size:127
Alignment explanation
Indices: 1057767--1058014 Score: 442
Period size: 127 Copynumber: 1.9 Consensus size: 127
1057757 TTAGGCACAC
* *
1057767 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTTTAAGATCAGACTGGACCGAGGG
1 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCGGACCGAGGG
* *
1057832 TTGCAACAGCAGGACCAGCAGCAGTATCGACAGCACGTAGGGGGGATCGAGCCTAAGCATAT
66 TTGCAACAGCAGGACCAGCAACAGGATCGACAGCACGTAGGGGGGATCGAGCCTAAGCATAT
*
1057894 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCGTTCCCAGTTTAAGATCAGACCGGACCGAGGG
1 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCGGACCGAGGG
1057959 TTGCAACAGACAGGACCAGCAACAGGATCGACAGCACGTAGGGGGGATCGAGCCTA
66 TTGCAACAG-CAGGACCAGCAACAGGATCGACAGCACGTAGGGGGGATCGAGCCTA
1058015 TCCCCGACTT
Statistics
Matches: 115, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
127 71 0.62
128 44 0.38
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (127 bp):
GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCGGACCGAGGG
TTGCAACAGCAGGACCAGCAACAGGATCGACAGCACGTAGGGGGGATCGAGCCTAAGCATAT
Found at i:1058299 original size:26 final size:26
Alignment explanation
Indices: 1058270--1058320 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1058260 GTTGACTTAG
1058270 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCCT-AGTCTAA
*
1058296 GCATATGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCTAGTCTA
1058321 GGATCGGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:1059506 original size:26 final size:26
Alignment explanation
Indices: 1059468--1059520 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1059458 GTTGACTTAG
*
1059468 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
1059494 GCATACAGTGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1059520 G
1 G
1059521 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1061903 original size:159 final size:159
Alignment explanation
Indices: 1061583--1062091 Score: 473
Period size: 159 Copynumber: 3.2 Consensus size: 159
1061573 CCCATTTTAA
* * * * * *
1061583 GCATATGGAGTTCATTACCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGTGACAGCAGGATCGA
1 GCATAAGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
1061646 CAGC-CTGTAGGGGGGACTAAACCGATCCCCGGCTTGCGCATTCTGTCTCTCCAGCCGGCTGAGC
65 CAGCAC-GTAGGGGGGACTGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * * *
1061710 CCCCGCACGCCCATTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
1061741 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATAAGGAGTTCATTCCATGTCTAAGCACCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * ** * *
1061805 AGCACGTAGAGGGGGACTGGGCCAATCCTCGGCTTGCACATTATGCCTCTCCGGTTTGCTCAGTG
66 AGCACGTAG-GGGGGACTGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* *
1061870 CCCGCACGCTCGTTTCATGGGTTGACTTGG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
1061900 GCATACGAAGTTCATTCC-TAGTCTAAG-ATCAGATCGGACT-AAGATT-T-GCAAGAACAGGAT
1 GCATAAGGAGTTCATTCCAT-GTCTAAGCACCAGATCGGACTGAGGGTTGTGGC-AG--CAGGAT
* * * **
1061960 CGAAAGCACATAGGGAGGGA-TCGAGCCGATCCTCGACTTATGCATTCTGCCTCTCCGGTCGGCT
62 CGACAGCACGTAGGG-GGGACT-GAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCT
*
1062024 GAGCGCCCGTACGTATGCTCGTTTCATGGGTTGGCTTAG
125 GAGCGCCCG--C--ACGCTCGTTTCATGGGTTGGCTTAG
1062063 GCATACA-GAGTTCATTCCATGTCTAAGCA
1 GCATA-AGGAGTTCATTCCATGTCTAAGCA
1062092 TACAGAGTTC
Statistics
Matches: 282, Mismatches: 51, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 67 0.24
159 160 0.57
161 1 0.00
163 44 0.16
164 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (159 bp):
GCATAAGGAGTTCATTCCATGTCTAAGCACCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGAC
AGCACGTAGGGGGGACTGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:1062093 original size:26 final size:26
Alignment explanation
Indices: 1062063--1062115 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1062053 GTTGGCTTAG
1062063 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
1062089 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1062115 G
1 G
1062116 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1062449 original size:26 final size:26
Alignment explanation
Indices: 1062419--1062471 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1062409 GTTGACTTAG
1062419 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1062445 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1062471 G
1 G
1062472 ATCCGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1062949 original size:26 final size:26
Alignment explanation
Indices: 1062919--1062971 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1062909 GTTGACTTAG
1062919 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1062945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1062971 G
1 G
1062972 ATCAGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1063211 original size:501 final size:501
Alignment explanation
Indices: 1062394--1063667 Score: 1466
Period size: 501 Copynumber: 2.5 Consensus size: 501
1062384 GAGCGCCTGT
1062394 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * * **
1062459 TTCCCAGTCTAAGATCCGATCGAACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGA
66 TTCCCAGTCTAAGATCAGATCG-ACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGGGA
* * * *** *
1062524 TCGGGCTGAT-CCCTGCTTGA-GCATTCTGCCACTCTGGTCGATTGAGCACCCGCACGCCCGTTT
130 TCGGGCGGATCCCCAGCTT-ACGCATTCTGCCTCTCTAACCGATTGAGCGCCCGCACGCCCGTTT
* * * *
1062587 CATGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTAAGCCTCAGCCGGAACGAGGGTTGTG
194 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACAAGGGTTGTG
* * * ** *
1062652 GCAGCGAGACTGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTACGCATTATGCCTCTT
259 GCAGCGAGACCGACAGCAAGCAGAAAGGGACCGGGCTGATCCCCGACTTACACATTATGCCTCTT
* * * * **
1062717 TGGTTGGCTAAGCG-CCTGCATGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTTATTTGTA
324 CGGCTGGCTAAGCGTCC-GCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCTA
* * * **
1062781 GTCTAAGATCGA-ATCGGACCGAGGGTTATGACAGTAGGATCGACAACACGTA-GGGGGGACCGG
388 GTCTAAGAT-GAGACCGGACCAAGGGTTACGACAGTAGGATCGACAACACACAGGGGGGGACCGG
* *
1062844 G-TCGATCCCCGGCTTGCACATTCTACCTCTCCGGTCGACTGACTGCCCGC
452 GCT-GATCCCCGACTTGCACATTCTACCTCTCCGGTCGACTAACTGCCCGC
1062894 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* *
1062959 TTCCCAGTCTAAGATCAGACCTGACTGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGGGA
66 TTCCCAGTCTAAGATCAGATC-GACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGGGA
* * * *
1063024 TCGGGTC-GATCCCCGGCTTACGCATTCTGCCTCTCTTACCGATTGAGTGCCCGCACTCCCGTTT
130 TCGGG-CGGATCCCCAGCTTACGCATTCTGCCTCTCTAACCGATTGAGCGCCCGCACGCCCGTTT
** **
1063088 CGGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATTAAGGGTTGTG
194 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACAAGGGTTGTG
* * * * *
1063153 GCAGTGGGACCGACAGCAAGCAGAAAGGGACGGGGCTGATCCTCGACTTGCACATTATGCCTCTT
259 GCAGCGAGACCGACAGCAAGCAGAAAGGGACCGGGCTGATCCCCGACTTACACATTATGCCTCTT
* * * * *
1063218 CGGCTGGCTCAGCGTCCGTACGCTCGTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCTAG
324 CGGCTGGCTAAGCGTCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCTAG
* * ** * * **
1063283 TCTAAGATTAGACCGGACCAAGGGTTGCGGTAGTGGGATCGACAGCACACAGGGGGGGATTGGGC
389 TCTAAGATGAGACCGGACCAAGGGTTACGACAGTAGGATCGACAACACACAGGGGGGGACCGGGC
* * * * * *
1063348 TGATCCCTGACTTGCACATTTTGCCTTTCCGGTCGGCTAAGTGCCCGC
454 TGATCCCCGACTTGCACATTCTACCTCTCCGGTCGACTAACTGCCCGC
* * * * *
1063396 ACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTC
* *
1063460 ATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGTTACAGGACCAGCAGCAGGATCAACAG
65 ATTCCCAGTCTAAGATCAGATC-GACCGAGGG-T-T-G---C---A--A-CAGCAGGATCGACAG
* * * * * * *
1063525 CACGTAGGGGGGATCGAGCGGATCCCCAACTTGCGCATTCTACCTCTCCAACCGGTTGAGCGCCC
117 CACGCAGGGGGGATCGGGCGGATCCCCAGCTTACGCATTCTGCCTCTCTAACCGATTGAGCGCCC
* ** * * * * *
1063590 ACACGCTTGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAACCCCAACCGGA
182 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
* *
1063655 CCGAGGGTTGTGG
247 ACAAGGGTTGTGG
1063668 TAGCAGGACC
Statistics
Matches: 652, Mismatches: 100, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
500 131 0.20
501 248 0.38
502 134 0.21
503 2 0.00
504 1 0.00
505 1 0.00
508 1 0.00
511 1 0.00
513 2 0.00
514 131 0.20
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (501 bp):
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGATCGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGGGAT
CGGGCGGATCCCCAGCTTACGCATTCTGCCTCTCTAACCGATTGAGCGCCCGCACGCCCGTTTCA
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACAAGGGTTGTGGC
AGCGAGACCGACAGCAAGCAGAAAGGGACCGGGCTGATCCCCGACTTACACATTATGCCTCTTCG
GCTGGCTAAGCGTCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCTAGTC
TAAGATGAGACCGGACCAAGGGTTACGACAGTAGGATCGACAACACACAGGGGGGGACCGGGCTG
ATCCCCGACTTGCACATTCTACCTCTCCGGTCGACTAACTGCCCGC
Found at i:1063266 original size:159 final size:160
Alignment explanation
Indices: 1063072--1063449 Score: 428
Period size: 159 Copynumber: 2.4 Consensus size: 160
1063062 CCGATTGAGT
* * * * *
1063072 GCCCGCACTCCCGTTTCGGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
** *
1063136 CCAGATTAAGGGTTGTGGCAGTGGGACCGACAGCA-AGCAGAAAGGGACGGGGCTGAT-CCTCGA
66 CCAGACCAAGGGTTGCGGCAGTGGGACCGACAGCACA-CAGAAAGGGACGGGGCTGATCCCT-GA
*
1063199 CTTGCACATTATGCCTCTT-CGG-CTGGCTCAGC
129 CTTGCACATTATGCCT-TTCCGGTC-GGCTAAGC
* * * **
1063231 GTCCGTACGCTCGTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATTAG
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG
* * * *** **
1063294 ACCGGACCAAGGGTTGCGGTAGTGGGATCGACAGCACACAGGGGGGGATTGGGCTGATCCCTGAC
65 ACCAGACCAAGGGTTGCGGCAGTGGGACCGACAGCACACAGAAAGGGACGGGGCTGATCCCTGAC
* *
1063359 TTGCACATTTTGCCTTTCCGGTCGGCTAAGT
130 TTGCACATTATGCCTTTCCGGTCGGCTAAGC
* *
1063390 GCCCGCACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1063450 TACGGAGTTC
Statistics
Matches: 182, Mismatches: 29, Indels: 15
0.81 0.13 0.07
Matches are distributed among these distances:
158 5 0.03
159 170 0.93
160 7 0.04
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.26
Consensus pattern (160 bp):
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
CCAGACCAAGGGTTGCGGCAGTGGGACCGACAGCACACAGAAAGGGACGGGGCTGATCCCTGACT
TGCACATTATGCCTTTCCGGTCGGCTAAGC
Found at i:1063457 original size:26 final size:26
Alignment explanation
Indices: 1063421--1063473 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1063411 GTTGGCTTAG
1063421 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
1063447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1063473 G
1 G
1063474 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1063831 original size:26 final size:26
Alignment explanation
Indices: 1063801--1063853 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1063791 GTTGACTTAG
*
1063801 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
1063827 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
1063853 G
1 G
1063854 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:1070421 original size:26 final size:26
Alignment explanation
Indices: 1070391--1070443 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1070381 GTTGACTTAG
* *
1070391 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
1070417 GCATACATAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
1070443 G
1 G
1070444 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:1070940 original size:26 final size:26
Alignment explanation
Indices: 1070891--1070943 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1070881 GTTGGCTTAG
* **
1070891 GCATACAGAGTTCATTTCGTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1070917 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1070943 G
1 G
1070944 ATTGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1071956 original size:159 final size:158
Alignment explanation
Indices: 1071296--1071956 Score: 551
Period size: 159 Copynumber: 4.2 Consensus size: 158
1071286 CCCAATCGAA
* ***
1071296 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGCCACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-ACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * ** * * * *
1071360 AGCATGC-TGGGGGGACCGAGCCGATCCCTAGCTTGCGCATTCTACCTCTCTGGCCGACTGAGCA
64 AGCACGCATAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* *
1071424 CCCACACGCCCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCCCATTTCGTGGGTTGACTTAG
* ** * ** *
1071454 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGTGGGAAT-GGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAACCGGACCGAGGGTTGTGGCAGCAGG-ATCGAC
* * * * ** ** ** *
1071518 AGCACGCA-AGTGGGATCGGGTCGATCCCCGTATTATGCATTCTGCCTCTCCGGTTGGTTGA-CT
64 AGCACGCATAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC-
* * *
1071581 GCTCGCACGCCCACTTCGTGGGTTGAATTAG
128 GCCCGCACGCCCATTTCGTGGGTTGACTTAG
* * ** * ** **
1071612 GCATAGGGAGTTCATTCCTTGTCTAACCTCCAGCCGGACCGAGGGTTGTGGCAGTGGGGCCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGAT-CAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * * * * * *
1071677 -CAACGTATAAGAGGAACAAGCCGATCCTCGGCATGCGCATTATGCCTCTTCGGTCGGCTCAGTG
65 GC-ACGCATAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * * *
1071741 CCCGCACGCTCGTTTCATGGGTTGACTTAT
129 CCCGCACGCCCATTTCGTGGGTTGACTTAG
* * * * *
1071771 GCATACGGAGTTCATTTCAAGTCTAAGATTAGGCCGGACTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCA-ACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
** * *
1071836 GCACGCAGGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGC
65 GCACGCATAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
** *
1071901 CCGCACGCTTATTTCGTGGGTTGGCTTAG
130 CCGCACGCCCATTTCGTGGGTTGACTTAG
*
1071930 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
1071957 CATACGGAGC
Statistics
Matches: 386, Mismatches: 105, Indels: 23
0.75 0.20 0.04
Matches are distributed among these distances:
157 6 0.02
158 169 0.44
159 210 0.54
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCATAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCCCATTTCGTGGGTTGACTTAG
Found at i:1072035 original size:185 final size:185
Alignment explanation
Indices: 1071771--1072363 Score: 690
Period size: 185 Copynumber: 3.1 Consensus size: 185
1071761 GTTGACTTAT
* * * * ** *
1071771 GCATACGGAGTTCATTTCAAGTCTAAGATTAGG-CCGGACTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * *
1071835 AGCACGCAGGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCG
65 AGCACGCAAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* *
1071900 CCCGCACGCTTATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
1071956 GCATACGGAGCTCATTCCCAATCTAAGATCGGACC-GCACCAAGGGTTGCGGCAGCAGGAAT-GA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCAAGGGTTGCGGCAGCAGG-ATCGA
* * * * * * *
1072019 CAGCACTCAAGGGGGGACCAAGCCGGTCCCCGACTTGCGCATTCTACCTCTCTGGCTGACTGAGC
64 CAGCACGCAAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* *
1072084 GCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAA
129 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
1072141 GAATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGACTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGG-T-T----GC-GG-C-AGC-
* * *
1072206 GTAGGATCGACAGCACGC-AGAGGGGGATCGCGCCAATCCCCGACTTGCGCATTCTGCCTCTCCG
56 --AGGATCGACAGCACGCAAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG
* ** *
1072270 GCCAGCTGAGCGCTTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCC
118 GCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
1072335 TAA
183 TAA
*
1072338 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1072364 AAGTTTGAGC
Statistics
Matches: 342, Mismatches: 48, Indels: 24
0.83 0.12 0.06
Matches are distributed among these distances:
184 4 0.01
185 190 0.56
186 4 0.01
187 1 0.00
191 2 0.01
192 2 0.01
193 1 0.00
194 3 0.01
196 4 0.01
197 131 0.38
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:1073165 original size:26 final size:26
Alignment explanation
Indices: 1073135--1073187 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1073125 GTTGACTTAG
*
1073135 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
1073161 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1073187 G
1 G
1073188 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1073643 original size:158 final size:156
Alignment explanation
Indices: 1073161--1073662 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 156
1073151 CTCAGTCTAA
* * * *
1073161 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGATAGCAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGGCA
* * *
1073226 GCATGCAGAGGGGACCGGGCCGATCC-CTGGCTTGCACATTCTACCTCTCCGGTCGGTTGAGCAC
65 GCATACAGAGGGGACCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCC-GTCGGTTGAGCAC
1073290 CCGCATGCTCATTTCGTGGGTTGGCTTAG
128 CCGCATGCTCATTTCGTGGGTTGGCTTAG
* ** ** * *
1073319 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAAACCGAGGGTTACGACAGC-GTGA-CTG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGATAGCAG-GATC-G
* ** * *
1073381 GCAGCACACAGAGGGGGACTAGGCCGAT-CTCCGACTTGCGCATTATGCCTCTCCGATCGGCTT-
62 GCAGCATACAGA-GGGGACCGGGCCGATCCT-CGGCTTGCGCATTCTGCCTCTCCG-TCGG-TTG
* * * * * * **
1073444 TGCTCCTGAATGCTCGTTTTGTGGGTTAACTTAG
123 AGCACCCGCATGCTCATTTCGTGGGTTGGCTTAG
* * * **
1073478 GCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGGCA
* * * *
1073543 GCATACAGTGGGGACCGGGTCAATCCTCGGCTTACGCATTCTGCCTCTCCAGTCGGTTGAGCACC
65 GCATACAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC-GTCGGTTGAGCACC
* *
1073608 CGCAGGCTCATTTCATGGGTTGGCTTAG
129 CGCATGCTCATTTCGTGGGTTGGCTTAG
1073636 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
1073663 CATACGAAGT
Statistics
Matches: 268, Mismatches: 59, Indels: 34
0.74 0.16 0.09
Matches are distributed among these distances:
157 8 0.03
158 138 0.51
159 116 0.43
160 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGGCAG
CATACAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGTCGGTTGAGCACCCG
CATGCTCATTTCGTGGGTTGGCTTAG
Found at i:1073666 original size:26 final size:26
Alignment explanation
Indices: 1073636--1073688 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1073626 GTTGGCTTAG
*
1073636 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
1073662 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1073688 G
1 G
1073689 ATCGATTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1074221 original size:26 final size:26
Alignment explanation
Indices: 1074171--1074223 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1074161 GTAGGTTTAG
*
1074171 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
1074197 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
1074223 G
1 G
1074224 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:1074381 original size:184 final size:183
Alignment explanation
Indices: 1073827--1074554 Score: 651
Period size: 185 Copynumber: 4.0 Consensus size: 183
1073817 GTTGACTTAG
* * * * *
1073827 GCATACGGAGTTCATCCCCAGTCTAAGATCAGATCGAAGTGAGGGTTGCGGTAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCAACA
* * * * *
1073892 GCACGCAGGTGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTACCTCTTCGATCGGTTGAGCAC
66 GCACGTAGG-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATC-GATGAGCAC
* * * *
1073957 CCGCACGCTCGTTTCATAGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAA
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* ** * * * * * * **
1074012 GCATAGGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAAGGTTACGGCAGCAGGATTGATT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGA-TCAAC
* * ** * * * *
1074077 A-CACGTGGGGAGGGATCGGGCCGATCCCCAGCTTGCATATTCTGCCTCTCTGGTTGGCTGAGCA
65 AGCACGTAGGG-GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-TCGATCGATGAGCA
* * * *
1074141 CCCGCACGCTCATTTTGTGGGTAGGTTTAGGCATACAGAGTTCATTCCATGTCTAA
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* ** *
1074197 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGGGTTGCTACAGCAGGACCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCAACA
* * **
1074262 GCACGTAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTC-AGTCGATGGAGTGC
66 GCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGA-TCGAT-GAGCAC
* * *
1074326 CCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAA
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAA
* * ** ** *
1074381 GTATACAGAGTTCATTCTTAGTCTAAGATCAGATTGGA-TCGAGGGTT-----A-C--GAT--AC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GAGGGTTGCGGCAGCAGGATCAAC
* * * * * *
1074435 --CACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGATTGAGCGC
65 AGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGA-TGAGCAC
** * * **
1074498 CCATACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
1074553 GC
1 GC
1074555 CCTAACCGGA
Statistics
Matches: 435, Mismatches: 97, Indels: 35
0.77 0.17 0.06
Matches are distributed among these distances:
171 3 0.01
172 95 0.22
173 1 0.00
174 2 0.00
176 2 0.00
178 1 0.00
179 1 0.00
183 5 0.01
184 122 0.28
185 197 0.45
186 6 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCAACA
GCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGATGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:1074728 original size:26 final size:26
Alignment explanation
Indices: 1074699--1074751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1074689 GTTGACTTAG
*
1074699 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
1074725 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1074751 G
1 G
1074752 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1079973 original size:26 final size:26
Alignment explanation
Indices: 1079937--1079989 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1079927 GTTGACTTAG
1079937 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
*
1079963 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
1079989 G
1 G
1079990 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:1080487 original size:26 final size:26
Alignment explanation
Indices: 1080437--1080489 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1080427 GTTGGCTTAG
* *
1080437 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
1080463 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
1080489 G
1 G
1080490 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Done.