Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 90 of 93
Found at i:14777852 original size:19 final size:19
Alignment explanation
Indices: 14777780--14777854 Score: 71
Period size: 19 Copynumber: 3.8 Consensus size: 19
14777770 AAATTTTCAT
*
14777780 AATTTTTTAGACTTTTTGAA
1 AATTTTTTAGA-TTTTTAAA
* *
14777800 AATTTTAATA-ATTTTTTAA
1 AATTTT-TTAGATTTTTAAA
**
14777819 AATTCTTTTTTATTTTTAAA
1 AATT-TTTTAGATTTTTAAA
14777839 AATTTTTTAGATTTTT
1 AATTTTTTAGATTTTT
14777855 TATTTCAATT
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
19 22 0.49
20 21 0.47
21 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (19 bp):
AATTTTTTAGATTTTTAAA
Found at i:14777855 original size:20 final size:20
Alignment explanation
Indices: 14777780--14777856 Score: 70
Period size: 20 Copynumber: 3.9 Consensus size: 20
14777770 AAATTTTCAT
* *
14777780 AATTTTTTAGACTTTTTGAA
1 AATTTTTTAGATTTTTTAAA
*
14777800 AATTTTAATA-ATTTTTT-AA
1 AATTTT-TTAGATTTTTTAAA
**
14777819 AATTCTTTTTTA-TTTTTAAA
1 AATT-TTTTAGATTTTTTAAA
14777839 AATTTTTTAGATTTTTTA
1 AATTTTTTAGATTTTTTA
14777857 TTTCAATTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 17 0.37
20 27 0.59
21 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (20 bp):
AATTTTTTAGATTTTTTAAA
Found at i:14780762 original size:16 final size:17
Alignment explanation
Indices: 14780741--14780781 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
14780731 GAATATAAAT
*
14780741 AAATTATTATT-TATAA
1 AAATTATGATTATATAA
14780757 AAATTATGATTATATAA
1 AAATTATGATTATATAA
14780774 AAAGTTAT
1 AAA-TTAT
14780782 AATCGTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.45
17 8 0.36
18 4 0.18
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (17 bp):
AAATTATGATTATATAA
Found at i:14780776 original size:18 final size:18
Alignment explanation
Indices: 14780733--14780781 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
14780723 AACTATTTGA
*
14780733 ATATAAATAAATTATTATT
1 ATATAAA-AAATTATGATT
14780752 -TAT-AAAAATTATGATT
1 ATATAAAAAATTATGATT
*
14780768 ATATAAAAAGTTAT
1 ATATAAAAAATTAT
14780782 AATCGTTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 10 0.38
17 5 0.19
18 11 0.42
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (18 bp):
ATATAAAAAATTATGATT
Found at i:14782230 original size:2 final size:2
Alignment explanation
Indices: 14782223--14782263 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
14782213 TCGTATTATT
14782223 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
14782264 AATGTGGTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14788361 original size:23 final size:23
Alignment explanation
Indices: 14788317--14788370 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
14788307 ACTCTCCCCT
**
14788317 TTTTTTTTTCTCTATTTTTTTAG
1 TTTTTTTTTCTCTATTCCTTTAG
14788340 TTTCTTTTTTCTCT-TTCCTTTAG
1 TTT-TTTTTTCTCTATTCCTTTAG
14788363 TTTTTTTT
1 TTTTTTTT
14788371 AGTTTACGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 5 0.18
23 13 0.46
24 10 0.36
ACGTcount: A:0.06, C:0.13, G:0.04, T:0.78
Consensus pattern (23 bp):
TTTTTTTTTCTCTATTCCTTTAG
Found at i:14791880 original size:25 final size:26
Alignment explanation
Indices: 14791852--14791921 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 26
14791842 TATCTCCAAT
*
14791852 TCTTTTGTTGAAAA-AATTAAGTACA
1 TCTTTTGTTGAAAAGAATTAAATACA
14791877 TCTTTTGTTGAAAAGGCTTAATTAAATACA
1 TCTTTTGTTGAAAA-G---AATTAAATACA
14791907 TCTTTTGTTGAAAAG
1 TCTTTTGTTGAAAAG
14791922 GCTTAATAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
25 14 0.36
29 1 0.03
30 24 0.62
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (26 bp):
TCTTTTGTTGAAAAGAATTAAATACA
Found at i:14791907 original size:30 final size:30
Alignment explanation
Indices: 14791866--14791928 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
14791856 TTGTTGAAAA
*
14791866 AATTAAGTACATCTTTTGTTGAAAAGGCTT
1 AATTAAATACATCTTTTGTTGAAAAGGCTT
14791896 AATTAAATACATCTTTTGTTGAAAAGGCTT
1 AATTAAATACATCTTTTGTTGAAAAGGCTT
14791926 AAT
1 AAT
14791929 AAGTGTTCAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.40
Consensus pattern (30 bp):
AATTAAATACATCTTTTGTTGAAAAGGCTT
Found at i:14802346 original size:21 final size:21
Alignment explanation
Indices: 14802320--14802360 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
14802310 TTTTGAGTGT
*
14802320 CAGAATTTATCTGGAATGGGC
1 CAGAATTTATCCGGAATGGGC
14802341 CAGAATTTATCCGGAATGGG
1 CAGAATTTATCCGGAATGGG
14802361 TTATAAACTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (21 bp):
CAGAATTTATCCGGAATGGGC
Found at i:14803046 original size:52 final size:51
Alignment explanation
Indices: 14802960--14803106 Score: 170
Period size: 52 Copynumber: 2.8 Consensus size: 51
14802950 TATAACCATA
* * * *
14802960 CAAACTTACCCATTAAGAATCTCTCTTCTCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTACCTATTAAGAATCTCT-TTCTTTTAGAATTCTTCTCCTGCAAAT
* * *
14803012 CAAACTTGCCTATTAAGAATCACTTTCCTTTTAGAATTCTTCTCTTGCAAAT
1 CAAACTTACCTATTAAGAATCTCTTT-CTTTTAGAATTCTTCTCCTGCAAAT
* *
14803064 CAAACCTACTTATTAAGAATCTTCTTTCTTTT-GAAATTCTTCT
1 CAAACTTACCTATTAAGAATC-TCTTTCTTTTAG-AATTCTTCT
14803107 TTTGCAAGTC
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
51 3 0.04
52 74 0.91
53 4 0.05
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (51 bp):
CAAACTTACCTATTAAGAATCTCTTTCTTTTAGAATTCTTCTCCTGCAAAT
Found at i:14803168 original size:11 final size:11
Alignment explanation
Indices: 14803143--14803182 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
14803133 AATATATGAT
*
14803143 AAATCTCAAAA
1 AAATCTCAAAC
* *
14803154 AAATTTCTAAC
1 AAATCTCAAAC
14803165 AAATCTCAAAC
1 AAATCTCAAAC
14803176 AAATCTC
1 AAATCTC
14803183 TTATGGGATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.25
Consensus pattern (11 bp):
AAATCTCAAAC
Found at i:14804561 original size:25 final size:24
Alignment explanation
Indices: 14804507--14804562 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
14804497 TATATTTTTA
*
14804507 TTTTATTAAATTTATATATATAAT
1 TTTTATTAAATTTATAAATATAAT
* *
14804531 TATTATTAAAATTTA-AAATCATATT
1 TTTTATT-AAATTTATAAAT-ATAAT
14804556 TTTTATT
1 TTTTATT
14804563 TTTATATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTTATTAAATTTATAAATATAAT
Found at i:14805171 original size:30 final size:30
Alignment explanation
Indices: 14805092--14805195 Score: 109
Period size: 30 Copynumber: 3.4 Consensus size: 30
14805082 TAAATTTTTA
*
14805092 TTATATTTAAATAAATATTTAACATTTAAT
1 TTATATTTAAATAAATTTTTAACATTTAAT
* * * * ***
14805122 TTGTATTCATATAAGTTTTTTGTATTTAAT
1 TTATATTTAAATAAATTTTTAACATTTAAT
*
14805152 TTATATTTAAATAAATTTTTAAACTTTTAAT
1 TTATATTTAAATAAATTTTT-AACATTTAAT
*
14805183 TTATACTTAAATA
1 TTATATTTAAATA
14805196 GTTTCTTAAC
Statistics
Matches: 56, Mismatches: 17, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
30 38 0.68
31 18 0.32
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (30 bp):
TTATATTTAAATAAATTTTTAACATTTAAT
Found at i:14805301 original size:29 final size:29
Alignment explanation
Indices: 14805248--14805303 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
14805238 CAAATTAAAG
* *
14805248 TATAAAAATTTATTTGGATAAAATAAATA
1 TATAAAAATTTATTTGAAAAAAATAAATA
14805277 TATAAAAATTTATTT-AAAAATAATAAA
1 TATAAAAATTTATTTGAAAAA-AATAAA
14805304 ATAATTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 3 0.12
29 21 0.88
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.38
Consensus pattern (29 bp):
TATAAAAATTTATTTGAAAAAAATAAATA
Found at i:14814684 original size:17 final size:17
Alignment explanation
Indices: 14814662--14814694 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14814652 TTAATTTATA
14814662 CATAAATAATTCTTTAC
1 CATAAATAATTCTTTAC
*
14814679 CATAAATAATTTTTTA
1 CATAAATAATTCTTTA
14814695 TTTAAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (17 bp):
CATAAATAATTCTTTAC
Found at i:14814782 original size:29 final size:29
Alignment explanation
Indices: 14814703--14814782 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
14814693 TATTTAAAAC
* * *
14814703 AAAATTTTATTTAGATATAAATTAAAATAT
1 AAAAATTTATTTAAATAT-AATAAAAATAT
*
14814733 AAAAATTTATTTAAATGTAATAAAAATAT
1 AAAAATTTATTTAAATATAATAAAAATAT
*
14814762 AAAAATTTATTTAAAAATAAT
1 AAAAATTTATTTAAATATAAT
14814783 GAAATAAATC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 29 0.66
30 15 0.34
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (29 bp):
AAAAATTTATTTAAATATAATAAAAATAT
Found at i:14816799 original size:41 final size:41
Alignment explanation
Indices: 14816729--14816811 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
14816719 ATCATTTCTC
***
14816729 ATTATTAATACCAAACACTTTCTTAAAAAAACAAAACATTT
1 ATTATTAATACCAAACACACCCTTAAAAAAACAAAACATTT
* * * *
14816770 ATTATTGATACCAAACACACCCTTGAAAAAAGAAAGCATTT
1 ATTATTAATACCAAACACACCCTTAAAAAAACAAAACATTT
14816811 A
1 A
14816812 AACTTCCTGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.28
Consensus pattern (41 bp):
ATTATTAATACCAAACACACCCTTAAAAAAACAAAACATTT
Found at i:14818121 original size:8 final size:8
Alignment explanation
Indices: 14818108--14818144 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
14818098 ATTTTATTTA
14818108 TATATATT
1 TATATATT
*
14818116 TATATAAT
1 TATATATT
14818124 TATATATT
1 TATATATT
*
14818132 TAAATATT
1 TATATATT
14818140 TATAT
1 TATAT
14818145 TTAAAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TATATATT
Found at i:14818148 original size:14 final size:16
Alignment explanation
Indices: 14818108--14818162 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
14818098 ATTTTATTTA
*
14818108 TATATATTTATATAAT
1 TATATATTTAAATAAT
14818124 TATATATTTAAAT-AT
1 TATATATTTAAATAAT
*
14818139 T-TATATTTAAAAAAT
1 TATATATTTAAATAAT
*
14818154 AATAT-TTTA
1 TATATATTTA
14818163 TTAATTTCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
14 10 0.29
15 9 0.26
16 15 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATATATTTAAATAAT
Found at i:14819793 original size:22 final size:22
Alignment explanation
Indices: 14819753--14819794 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
14819743 AAATTAATTC
*
14819753 TTTGAATAAAAATAGATACACT
1 TTTGAATAAAAATAAATACACT
14819775 TTTGAA-AAAAATCAAATACA
1 TTTGAATAAAAAT-AAATACA
14819795 TCTACAGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.29
Consensus pattern (22 bp):
TTTGAATAAAAATAAATACACT
Found at i:14830959 original size:15 final size:16
Alignment explanation
Indices: 14830939--14830970 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
14830929 ATTCTGAAGG
14830939 AGAGAGAAA-AAAAGA
1 AGAGAGAAAGAAAAGA
14830954 AGAGAGAAAGAAAAGA
1 AGAGAGAAAGAAAAGA
14830970 A
1 A
14830971 AGGAAATGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (16 bp):
AGAGAGAAAGAAAAGA
Found at i:14831438 original size:11 final size:12
Alignment explanation
Indices: 14831422--14831454 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
14831412 AAAAATTAAT
14831422 TAATAAAAAA-G
1 TAATAAAAAATG
14831433 TAATAAAAAATG
1 TAATAAAAAATG
*
14831445 TAAGAAAAAA
1 TAATAAAAAA
14831455 AAATTTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (12 bp):
TAATAAAAAATG
Found at i:14845564 original size:17 final size:18
Alignment explanation
Indices: 14845537--14845570 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14845527 CCAAAAATAT
14845537 TTTTTTATTATTTTTTTC
1 TTTTTTATTATTTTTTTC
14845555 TTTTTT-TTATTTTTTT
1 TTTTTTATTATTTTTTT
14845571 TAATAGGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (18 bp):
TTTTTTATTATTTTTTTC
Found at i:14846405 original size:23 final size:23
Alignment explanation
Indices: 14846386--14846428 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
14846376 AATATAAATT
*
14846386 TTTTATTA-TAATTATAATAAAA
1 TTTTAATAGTAATTATAATAAAA
*
14846408 TTTTAATAGTATTTATAATAA
1 TTTTAATAGTAATTATAATAA
14846429 TAATAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
TTTTAATAGTAATTATAATAAAA
Found at i:14846458 original size:24 final size:23
Alignment explanation
Indices: 14846431--14846500 Score: 59
Period size: 24 Copynumber: 2.8 Consensus size: 23
14846421 TATAATAATA
14846431 ATAATTATTTTTTAAAATTTTATT
1 ATAATTATTTTTTAAAATTTTA-T
* ** *
14846455 ATAATTGTTAATAAAAATTTTAT
1 ATAATTATTTTTTAAAATTTTAT
14846478 ATTAATTTAATTTTATTAAAATT
1 A-TAA-TT-ATTTT-TTAAAATT
14846501 AATATTTTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
23 2 0.06
24 21 0.62
25 2 0.06
26 2 0.06
27 7 0.21
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (23 bp):
ATAATTATTTTTTAAAATTTTAT
Found at i:14846498 original size:28 final size:29
Alignment explanation
Indices: 14846456--14846517 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 29
14846446 AATTTTATTA
*
14846456 TAATTGTTAATAAAAATT-TTATATTAATT
1 TAATTGTTAAT-AAAATTAATATATTAATT
* *
14846485 TAATT-TTATTAAAATTAATATTTTAATT
1 TAATTGTTAATAAAATTAATATATTAATT
14846513 TAATT
1 TAATT
14846518 ATAAATACGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 6 0.21
28 18 0.62
29 5 0.17
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (29 bp):
TAATTGTTAATAAAATTAATATATTAATT
Found at i:14851389 original size:25 final size:25
Alignment explanation
Indices: 14851339--14851389 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
14851329 TTCCTTATTC
* *
14851339 TTTTGCTTCTTTTTCCATATCTTTT
1 TTTTGCTTCTTTTTCCACAACTTTT
*
14851364 TTTTGCTTTTTTTTTCCACAACTTTT
1 TTTTGC-TTCTTTTTCCACAACTTTT
14851390 CTCATCTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.10, C:0.20, G:0.04, T:0.67
Consensus pattern (25 bp):
TTTTGCTTCTTTTTCCACAACTTTT
Found at i:14857035 original size:27 final size:27
Alignment explanation
Indices: 14857005--14857056 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
14856995 TTTGTTTAAA
* *
14857005 CGATCTTGGTCTCTATCTTTGGACTGT
1 CGATCATGGTCTCTATATTTGGACTGT
*
14857032 CGATCATGGTCTCTTTATTTGGACT
1 CGATCATGGTCTCTATATTTGGACT
14857057 ACTTCTCTCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.44
Consensus pattern (27 bp):
CGATCATGGTCTCTATATTTGGACTGT
Found at i:14858234 original size:8 final size:8
Alignment explanation
Indices: 14858213--14858255 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
14858203 GGTAAGTTTG
*
14858213 AGAGCACA
1 AGAGAACA
*
14858221 AAAGAACA
1 AGAGAACA
14858229 AGAGAACA
1 AGAGAACA
14858237 AGAGAACA
1 AGAGAACA
*
14858245 AGAGAATA
1 AGAGAACA
14858253 AGA
1 AGA
14858256 AAATTGTTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.63, C:0.12, G:0.23, T:0.02
Consensus pattern (8 bp):
AGAGAACA
Found at i:14860905 original size:21 final size:21
Alignment explanation
Indices: 14860867--14860911 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
14860857 ATAATAAAAT
* *
14860867 ATAAATATTAAAACCAAATCA
1 ATAAATATTAAAAACAAATAA
14860888 ATAAATA-TAATAAACAAATAA
1 ATAAATATTAA-AAACAAATAA
14860909 ATA
1 ATA
14860912 TTAAACTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (21 bp):
ATAAATATTAAAAACAAATAA
Found at i:14862568 original size:12 final size:12
Alignment explanation
Indices: 14862540--14862602 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
14862530 ATTCAAAAAC
14862540 ACCA-TTAGCAA
1 ACCATTTAGCAA
14862551 ACCATTTAG-AA
1 ACCATTTAGCAA
*
14862562 ACACATTCAAG-AA
1 AC-CATT-TAGCAA
*
14862575 ATCATTTAGCAA
1 ACCATTTAGCAA
* *
14862587 ATCATTCAGCAA
1 ACCATTTAGCAA
14862599 ACCA
1 ACCA
14862603 ATATCATACA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
11 10 0.23
12 28 0.65
13 5 0.12
ACGTcount: A:0.46, C:0.24, G:0.08, T:0.22
Consensus pattern (12 bp):
ACCATTTAGCAA
Found at i:14862621 original size:28 final size:28
Alignment explanation
Indices: 14862589--14862657 Score: 120
Period size: 28 Copynumber: 2.5 Consensus size: 28
14862579 TTTAGCAAAT
14862589 CATTCAGCAAACCAATATCATACAATAC
1 CATTCAGCAAACCAATATCATACAATAC
*
14862617 CATTCAGCAAACCAATATCATACAATAT
1 CATTCAGCAAACCAATATCATACAATAC
*
14862645 TATTCAGCAAACC
1 CATTCAGCAAACC
14862658 TTAATATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.45, C:0.28, G:0.04, T:0.23
Consensus pattern (28 bp):
CATTCAGCAAACCAATATCATACAATAC
Found at i:14863662 original size:189 final size:189
Alignment explanation
Indices: 14863334--14863869 Score: 580
Period size: 189 Copynumber: 2.8 Consensus size: 189
14863324 AAAATTTAAA
* * * * ** *
14863334 AAGATTATTGAAGGCGTATTATGCAAAAAATGGCTTTAATAAATTCTTTTAAAAATTTTGAGTGG
1 AAGATTATTGAAGGTGTATTATGTAAAAAATGTCTTTAATAAATTC-TTTAAAAAATTTGAAAGA
*** * * * *
14863399 ATTAGTGAAGATATTTTTAGTCAAAAACACCTATAATAATCTCATCATCAAAATTTTAACAGATT
65 ATTAGTGAAGGCGTTTTTAGTAAAAAAAACCTATAATAATCTCATCATCAAAATTTAAAAAGATT
* *** * * *
14863464 ATTGAAGGTATTTTTGTTAGAAAACTGTCTTCACTGATATTTCTCTTATAAAAATGG-TG
130 ATTGAAGGTATTTTTGATAGAAAACCACCTTCACTGATATTCCCCTAATAAAAATGGATG
* *
14863523 AAGATTGTTGAAGGTGTATTATGTAAAAAATGTCTTAAATAAATTTCTTTAAAAAATTTGAAAGA
1 AAGATTATTGAAGGTGTATTATGTAAAAAATGTCTTTAATAAA-TTCTTTAAAAAATTTGAAAGA
* ** * * *
14863588 ATTAGTGAAGGCGTTTATAGTAAAAAATGCATATAATAATCTCCTCTTCAAAATTTAAAAAGATT
65 ATTAGTGAAGGCGTTTTTAGTAAAAAAAACCTATAATAATCTCATCATCAAAATTTAAAAAGATT
* * *
14863653 ATCGAAGGTATTTTTGATAGAAAACCACCTTCATTGATATTCCCCTAATAGAAATGGATG
130 ATTGAAGGTATTTTTGATAGAAAACCACCTTCACTGATATTCCCCTAATAAAAATGGATG
* * *
14863713 --GTATTATTGAA--TGTATTTTTTACAAAAAAT-TACCTTTAATAAATTCTTTCAAAAAAATTG
1 AAG-ATTATTGAAGGTGTATTATGT--AAAAAATGT--CTTTAATAAATTCTTT-AAAAAATTTG
14863773 AAAGAATTAGTGAAGGCGTTTTTAGTAAAAAAAAAAACCTATAATAATCTCATCATCAAAATTTA
60 AAAGAATTAGTGAAGGCGTTTTTAGT---AAAAAAAACCTATAATAATCTCATCATCAAAATTTA
** * *
14863838 AGGAGATTATTGAAGGTATTTTCGATAAAAAA
122 AAAAGATTATTGAAGGTATTTTTGATAGAAAA
14863870 TCGTCTTTAA
Statistics
Matches: 289, Mismatches: 47, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
187 8 0.03
188 2 0.01
189 173 0.60
190 48 0.17
193 58 0.20
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.36
Consensus pattern (189 bp):
AAGATTATTGAAGGTGTATTATGTAAAAAATGTCTTTAATAAATTCTTTAAAAAATTTGAAAGAA
TTAGTGAAGGCGTTTTTAGTAAAAAAAACCTATAATAATCTCATCATCAAAATTTAAAAAGATTA
TTGAAGGTATTTTTGATAGAAAACCACCTTCACTGATATTCCCCTAATAAAAATGGATG
Found at i:14863886 original size:193 final size:185
Alignment explanation
Indices: 14863371--14863967 Score: 538
Period size: 189 Copynumber: 3.1 Consensus size: 185
14863361 AAATGGCTTT
* ** * *** * * *
14863371 AATAAATTCTTTTAAAAATTTTGAGTGGATTAGTGAAGATATTTTTAGTCAAAAACACCTATAAT
1 AATAAATTC-TTTAAAAAATTTGAAAGAATTAGTGAAGGCGTTTATAGTAAAAAAAACCTATAAT
* * *
14863436 AATCTCATCATCAAAATTTTAACAGATTATTGAAGGTATTTTTGTTAGAAAACTGTCTTCACTGA
65 AATCTCATCATCAAAA-TTTAAAAGATTATTGAAGGTATTTTTGATAGAAAAC-GTCTTCAATGA
* * * * *
14863501 TATTTCTCTTATAAAAATGG-TGAAGATTGTTGAAGGTGTATTATGT-AAAAAATGT--CTTA
128 TATTCCTCTAATAAAAATGGATG--GATTATTGAA--TGTATTTTTTAAAAAAAT-TACCTTA
** *
14863560 AATAAATTTCTTTAAAAAATTTGAAAGAATTAGTGAAGGCGTTTATAGTAAAAAATGCATATAAT
1 AATAAA-TTCTTTAAAAAATTTGAAAGAATTAGTGAAGGCGTTTATAGTAAAAAAAACCTATAAT
* * * ** *
14863625 AATCTCCTCTTCAAAATTTAAAAAGATTATCGAAGGTATTTTTGATAGAAAACCACCTTCATTGA
65 AATCTCATCATCAAAATTT-AAAAGATTATTGAAGGTATTTTTGATAGAAAA-CGTCTTCAATGA
* * *
14863690 TATTCCCCTAATAGAAATGGATGGTATTATTGAATGTATTTTTTACAAAAAATTACCTTT
128 TATTCCTCTAATAAAAATGGATGG-ATTATTGAATGTATTTTTTA-AAAAAATTACCTTA
* *
14863750 AATAAATTCTTTCAAAAAAATTGAAAGAATTAGTGAAGGCGTTTTTAGTAAAAAAAAAAACCTAT
1 AATAAATTCTTT-AAAAAATTTGAAAGAATTAGTGAAGGCGTTTATAGT---AAAAAAAACCTAT
* * * *
14863815 AATAATCTCATCATCAAAATTTAAGGAGATTATTGAAGGTATTTTCGATAAAAAATCGTCTTTAA
62 AATAATCTCATCATCAAAATTTAA-AAGATTATTGAAGGTATTTTTGATAGAAAA-CGTCTTCAA
* * * * * ** *
14863880 TGATATTCATCTGATAAAAATAGAGGGGATTATTGAA-GATCTTTTTTATAAAAAAAACACCTTC
125 TGATATTCCTCTAATAAAAATGGA-TGGATTATTGAATG-T-ATTTTT-TAAAAAAATTACCTTA
*
14863944 AATAAATTTTTTTAAAAAATTTGA
1 AATAAA-TTCTTTAAAAAATTTGA
14863968 GGGGTTAAGT
Statistics
Matches: 333, Mismatches: 56, Indels: 33
0.79 0.13 0.08
Matches are distributed among these distances:
187 8 0.02
188 5 0.02
189 137 0.41
190 49 0.15
192 3 0.01
193 90 0.27
194 34 0.10
195 7 0.02
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.37
Consensus pattern (185 bp):
AATAAATTCTTTAAAAAATTTGAAAGAATTAGTGAAGGCGTTTATAGTAAAAAAAACCTATAATA
ATCTCATCATCAAAATTTAAAAGATTATTGAAGGTATTTTTGATAGAAAACGTCTTCAATGATAT
TCCTCTAATAAAAATGGATGGATTATTGAATGTATTTTTTAAAAAAATTACCTTA
Found at i:14866897 original size:18 final size:18
Alignment explanation
Indices: 14866874--14866911 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
14866864 TATGAGAAAG
14866874 TTCTGAATGTGGAAGAGC
1 TTCTGAATGTGGAAGAGC
14866892 TTCTGAATGTGGAAGAGC
1 TTCTGAATGTGGAAGAGC
14866910 TT
1 TT
14866912 AACTAACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.11, G:0.32, T:0.32
Consensus pattern (18 bp):
TTCTGAATGTGGAAGAGC
Found at i:14870003 original size:161 final size:162
Alignment explanation
Indices: 14869733--14870127 Score: 398
Period size: 161 Copynumber: 2.5 Consensus size: 162
14869723 TGTGTCATTA
* * * *
14869733 AAAGGTAAAAATGC-AAATTAATAGTTATTATTCTATTTTAATAGTTTTGATAGTTTCAATACAT
1 AAAGGTAAAAATACAAAATTAATAGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACAT
*
14869797 GACATTAAACTTATCCAAAGTATTGAACTTAGTTTCCACGGTTGATATGTATGAAAAAA-TTATT
66 GACATTAAACTTATCCAAAGTATTAAACTTAGTTTCCACGGTTGATATGTAT-AAAAAAGTTATT
**
14869861 GTTTATGTCTATTTAAGACT-TTTTATG-TTGTT
130 GTTTACATCTATTTAAGACTATTTT-TGCTTGTT
* * *
14869893 AATAGGTAAAAATACAAAATT-ATTGTTATTGTTCTATTTTAACAGTTTGGATAGCTTGAATACA
1 AA-AGGTAAAAATACAAAATTAATAGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACA
* *** * * * * *
14869957 TGATATTAAACTTATTTGAA-TAATTAAACTTGGTTTCTATGGTTGATATGTGTAAAAAAGTTGT
65 TGACATTAAACTTATCCAAAGT-ATTAAACTTAGTTTCCACGGTTGATATGTATAAAAAAGTTAT
** *
14870021 TGTTTACATCTATTTGGGACTATTTTTGCTTTTT
129 TGTTTACATCTATTTAAGACTATTTTTGCTTGTT
* * * * *
14870055 AAAGGCAAAAATAC-AAATTAA-ACTT-TTGGATGC--TTTTAACAGTTTGCATGGCTTCAATAC
1 AAAGGTAAAAATACAAAATTAATAGTTATT--ATTCTATTTTAACAGTTTGGATAGCTTCAATAC
* *
14870115 ATAATATTAAACT
64 ATGACATTAAACT
14870128 AGTCTAAATA
Statistics
Matches: 195, Mismatches: 31, Indels: 19
0.80 0.13 0.08
Matches are distributed among these distances:
159 38 0.19
160 16 0.08
161 126 0.65
162 15 0.08
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (162 bp):
AAAGGTAAAAATACAAAATTAATAGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACAT
GACATTAAACTTATCCAAAGTATTAAACTTAGTTTCCACGGTTGATATGTATAAAAAAGTTATTG
TTTACATCTATTTAAGACTATTTTTGCTTGTT
Found at i:14871621 original size:33 final size:34
Alignment explanation
Indices: 14871584--14871651 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
14871574 ATACCACCAT
14871584 ATTAGTAG-CATTTTTTA-ATACAAACGTCATTAA
1 ATTAG-AGACATTTTTTAGATACAAACGTCATTAA
* * *
14871617 ATTAGCGATATTTTTTAGATATAAACGTCATTAA
1 ATTAGAGACATTTTTTAGATACAAACGTCATTAA
14871651 A
1 A
14871652 ATAGCGTCGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
32 1 0.03
33 13 0.43
34 16 0.53
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (34 bp):
ATTAGAGACATTTTTTAGATACAAACGTCATTAA
Found at i:14871643 original size:34 final size:33
Alignment explanation
Indices: 14871593--14871657 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 33
14871583 TATTAGTAGC
*
14871593 ATTTTTTAATACAAACGTCATTAAATTAGCGAT
1 ATTTTTTAATACAAACGTCATTAAAATAGCGAT
*
14871626 ATTTTTTAGATATAAACGTCATTAAAATAGCG
1 ATTTTTTA-ATACAAACGTCATTAAAATAGCG
14871658 TCGTTTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 8 0.28
34 21 0.72
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (33 bp):
ATTTTTTAATACAAACGTCATTAAAATAGCGAT
Found at i:14872133 original size:16 final size:16
Alignment explanation
Indices: 14872114--14872191 Score: 95
Period size: 16 Copynumber: 4.8 Consensus size: 16
14872104 ATAAATAAAT
14872114 AATCATGCAAATATTA
1 AATCATGCAAATATTA
* *
14872130 AATCATGTAAAAATATA
1 AATCATGCAAATAT-TA
*
14872147 TAATCATG-AGATATTA
1 -AATCATGCAAATATTA
14872163 AATCATGCAAATATTA
1 AATCATGCAAATATTA
*
14872179 AATTATGCAAATA
1 AATCATGCAAATA
14872192 AACTATAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
15 7 0.13
16 33 0.62
17 6 0.11
18 7 0.13
ACGTcount: A:0.51, C:0.09, G:0.08, T:0.32
Consensus pattern (16 bp):
AATCATGCAAATATTA
Found at i:14872166 original size:33 final size:34
Alignment explanation
Indices: 14872106--14872169 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 34
14872096 GTCATACAAT
14872106 AAATAAATAATCATGCAAATATTAAATCATGTAA
1 AAATAAATAATCATGCAAATATTAAATCATGTAA
* *
14872140 AAATATATAATCATG-AGATATTAAATCATG
1 AAATAAATAATCATGCAAATATTAAATCATG
14872170 CAAATATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 14 0.50
34 14 0.50
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.31
Consensus pattern (34 bp):
AAATAAATAATCATGCAAATATTAAATCATGTAA
Found at i:14872265 original size:17 final size:15
Alignment explanation
Indices: 14872233--14872293 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
14872223 GCAATTATAT
14872233 ATTCATACAAAAATA
1 ATTCATACAAAAATA
14872248 ATTCATACAAATAAATA
1 ATTCATAC-AA-AAATA
*
14872265 AGATCATA-AAAAAT-
1 A-TTCATACAAAAATA
*
14872279 A-TCATGCAAAAATA
1 ATTCATACAAAAATA
14872293 A
1 A
14872294 ATAATCAAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
12 4 0.10
13 6 0.15
14 2 0.05
15 12 0.31
16 4 0.10
17 6 0.15
18 5 0.13
ACGTcount: A:0.61, C:0.11, G:0.03, T:0.25
Consensus pattern (15 bp):
ATTCATACAAAAATA
Found at i:14873820 original size:18 final size:18
Alignment explanation
Indices: 14873799--14873844 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
14873789 ATTAAGCTTG
*
14873799 AAATTAACATAAAAATCA
1 AAATTAAAATAAAAATCA
* *
14873817 AAATTAAAATTACAATCA
1 AAATTAAAATAAAAATCA
*
14873835 AAACTAAAAT
1 AAATTAAAAT
14873845 TTTTAAGCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.65, C:0.11, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATTAAAATAAAAATCA
Found at i:14877853 original size:2 final size:2
Alignment explanation
Indices: 14877846--14877880 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
14877836 TTTTATCATT
14877846 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14877881 TTAATGATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:14878691 original size:30 final size:26
Alignment explanation
Indices: 14878657--14878720 Score: 74
Period size: 30 Copynumber: 2.3 Consensus size: 26
14878647 AAATAAAAAC
14878657 TTATTTAAATACAAATCAAAATATAAGAGT
1 TTATTTAAATAC-AA-CAAAA-ATAA-AGT
* *
14878687 TTATTTGAATACAACACAAATAAAGT
1 TTATTTAAATACAACAAAAATAAAGT
14878713 TTATTTAA
1 TTATTTAA
14878721 GAATAATGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 10 0.32
27 4 0.13
28 4 0.13
29 2 0.06
30 11 0.35
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.36
Consensus pattern (26 bp):
TTATTTAAATACAACAAAAATAAAGT
Found at i:14885119 original size:22 final size:22
Alignment explanation
Indices: 14885091--14885133 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14885081 AAATCTCATA
14885091 AGAGATTTGTTT-GAGATTTGTT
1 AGAGATTTGTTTGGA-ATTTGTT
14885113 AGAGATTTGTTTGGAATTTGT
1 AGAGATTTGTTTGGAATTTGT
14885134 CAGATATTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTGGAATTTGTT
Found at i:14885133 original size:11 final size:11
Alignment explanation
Indices: 14885092--14885125 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
14885082 AATCTCATAA
14885092 GAGATTTGTTT
1 GAGATTTGTTT
*
14885103 GAGATTTGTTA
1 GAGATTTGTTT
14885114 GAGATTTGTTT
1 GAGATTTGTTT
14885125 G
1 G
14885126 GAATTTGTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:14885238 original size:52 final size:52
Alignment explanation
Indices: 14885158--14885314 Score: 153
Period size: 52 Copynumber: 3.0 Consensus size: 52
14885148 TAGACTAGAA
* * *
14885158 GACTTGAAAAAGAAGAATTTTAAGAG-AAA-GGAAATTCTTAATAGGTAAGTTT
1 GACTTGAAAAAGAAGAATTCTAAAAGAAAATGG--ATTCTTAATAGGCAAGTTT
* *
14885210 GACTTGCAATAGAAGAATTCTAAAAGAAAATGGATTCTTAATAGGCAAGTTT
1 GACTTGAAAAAGAAGAATTCTAAAAGAAAATGGATTCTTAATAGGCAAGTTT
** * *
14885262 GACTT-ATAGGAGAAGAATTCTAAGAGGAGAA-GGATTCTTAAT-GGACAAGTTT
1 GACTTGA-AAAAGAAGAATTCTAA-AAGAAAATGGATTCTTAATAGG-CAAGTTT
14885314 G
1 G
14885315 TATGGTTATA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
51 2 0.02
52 78 0.87
53 8 0.09
54 2 0.02
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.28
Consensus pattern (52 bp):
GACTTGAAAAAGAAGAATTCTAAAAGAAAATGGATTCTTAATAGGCAAGTTT
Found at i:14886984 original size:58 final size:58
Alignment explanation
Indices: 14886922--14887075 Score: 148
Period size: 65 Copynumber: 2.5 Consensus size: 58
14886912 CAATTTAAAT
* *** *
14886922 CATATCATATAAAAATTTTATTGGTTTTCGAATTAAATTATAAAAATTTATAATTTTG
1 CATATTATATAAAAATTTTATTGAAATTCGAATTAAATTATAAAAATTTATAATTTTA
*
14886980 CATATTATTTAAAAATTTAAATTTTTATTGAAATTCGAATTAAATTATAAAAATTTATAATTTTA
1 CATATTA--T-ATAA---AAA-TTTTATTGAAATTCGAATTAAATTATAAAAATTTATAATTTTA
* * *
14887045 TATATTATTTAAAAATTTAAATT-AAATTCGA
1 CATATTATATAAAAATTT-TATTGAAATTCGA
14887076 TTAGATATGA
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
58 17 0.22
59 6 0.08
60 1 0.01
61 3 0.04
62 2 0.03
63 1 0.01
64 3 0.04
65 45 0.58
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.47
Consensus pattern (58 bp):
CATATTATATAAAAATTTTATTGAAATTCGAATTAAATTATAAAAATTTATAATTTTA
Found at i:14890160 original size:15 final size:15
Alignment explanation
Indices: 14890140--14890170 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14890130 CCTGTGGTCC
14890140 TCACCAACTTGATCT
1 TCACCAACTTGATCT
14890155 TCACCAACTTGATCT
1 TCACCAACTTGATCT
14890170 T
1 T
14890171 GGCAGCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.32, G:0.06, T:0.35
Consensus pattern (15 bp):
TCACCAACTTGATCT
Found at i:14894800 original size:228 final size:228
Alignment explanation
Indices: 14894397--14895080 Score: 697
Period size: 228 Copynumber: 3.0 Consensus size: 228
14894387 GCCAATCAAG
* * * *
14894397 ATGCAGATCTTCGTTAAGACCCTAACTGGCAAGACAATCACCCTGGAAGTCGAGAGTTCCGACAC
1 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACAATTACCTTGGAAGTCGAGAGTTCCGACAC
* * * ** *
14894462 GATCGATAACGTCAAGGCGAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAACAGCGTTTAA
66 AATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAAAGGTTAA
* * * * * * *
14894527 TCTTCGCAGGAAAACAGCTCGAAGACGGCCGAACCTTGGCCGATTACAACATCCAAAAGGAGTCA
131 TCTTTGCTGGGAAGCAACTTGAAGACGGACGAACCTTGGCCGATTACAACATCCAAAAGGAGTCA
* * * *
14894592 ACTCTCCACCTCGTCCTCCGTCTACGTGGTGGT
196 ACTCTTCACCTCGTCTTGCGTCTTCGTGGTGGT
* * * * * * *
14894625 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAAACCATTACCTTGGAAGTCGAAAGCTCTGACAC
1 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACAATTACCTTGGAAGTCGAGAGTTCCGACAC
* * * * *
14894690 AATCGACAATGTCAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAAAGGCTT-
66 AATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAAAGG-TTA
* * * *
14894754 ATCTTTGCTGGGAAGCAACTTGAGGACGGTCGAACTTTGGCCGATTATAACATCCAAAAGGAGTC
130 ATCTTTGCTGGGAAGCAACTTGAAGACGGACGAACCTTGGCCGATTACAACATCCAAAAGGAGTC
* * ** * * * * *
14894819 GACCCTTCATTTGGTTTTGAGGCTTCGTGGTGGG
195 AACTCTTCACCTCGTCTTGCGTCTTCGTGGTGGT
* ** * * * * * * * *
14894853 ATGCAGATCTTTGTCAAGACTTTGACAGGGAAGACTATTACTTTGGAGGTGGAGAGTTCGGATAC
1 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACAATTACCTTGGAAGTCGAGAGTTCCGACAC
* * * *
14894918 AATCGATAACGTCAAGGCGAAGATTCAGGACAAAGAAGGGATTCCACCAGATCAGCAAAGGTTGA
66 AATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAAAGGTTAA
* * * * * * * *
14894983 TTTTTGCTGGGAAGCAA-TTGGAAGATGGAAGGACCTTGGCTGATTACAATATTCAGAAGGAGTC
131 TCTTTGCTGGGAAGCAACTT-GAAGACGGACGAACCTTGGCCGATTACAACATCCAAAAGGAGTC
* *
14895047 CACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGT
195 AACTCTTCACCTCGTCTTGCGTCTTCGTGGTGGT
14895081 TTCTAAGTCT
Statistics
Matches: 363, Mismatches: 90, Indels: 6
0.79 0.20 0.01
Matches are distributed among these distances:
227 4 0.01
228 357 0.98
229 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (228 bp):
ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACAATTACCTTGGAAGTCGAGAGTTCCGACAC
AATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAAAGGTTAA
TCTTTGCTGGGAAGCAACTTGAAGACGGACGAACCTTGGCCGATTACAACATCCAAAAGGAGTCA
ACTCTTCACCTCGTCTTGCGTCTTCGTGGTGGT
Found at i:14895769 original size:59 final size:59
Alignment explanation
Indices: 14895655--14895771 Score: 153
Period size: 59 Copynumber: 2.0 Consensus size: 59
14895645 TATTAACTAA
* * * *
14895655 TGGTTCGAAGGCAAGAGTTACATTATATTATTTGGACTCTGTATCGCAGGTACTAGTAG
1 TGGTTCAAAGGCAAGAGTTACATTATAGTATTTGGACTCTGTATAGCAGGCACTAGTAG
* * * * *
14895714 TGGTTCAAAGGCAAGAGTTGCTTTCTAGTATTTGGACTCTGTATATCTGGCACTAGTA
1 TGGTTCAAAGGCAAGAGTTACATTATAGTATTTGGACTCTGTATAGCAGGCACTAGTA
14895772 CTAGGCTTCT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
59 49 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.35
Consensus pattern (59 bp):
TGGTTCAAAGGCAAGAGTTACATTATAGTATTTGGACTCTGTATAGCAGGCACTAGTAG
Found at i:14899065 original size:47 final size:47
Alignment explanation
Indices: 14898990--14899084 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 47
14898980 CTTTTATACA
14898990 AATGGTGATTCATGCATGAGTCGATTGTTAATAACTATAATAATATG
1 AATGGTGATTCATGCATGAGTCGATTGTTAATAACTATAATAATATG
* *
14899037 AATGGTTATTCATGCATGAGTC-AGTTGTTAGTAACTATAATAATATG
1 AATGGTGATTCATGCATGAGTCGA-TTGTTAATAACTATAATAATATG
14899084 A
1 A
14899085 TTCAATCTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 1 0.02
47 44 0.98
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (47 bp):
AATGGTGATTCATGCATGAGTCGATTGTTAATAACTATAATAATATG
Found at i:14907556 original size:3 final size:3
Alignment explanation
Indices: 14907537--14907580 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
14907527 TCTAGTTATA
* * *
14907537 AAT AAT TAT AGT AAT AAT AAT AAA AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14907581 ACAAAAGATC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14915503 original size:13 final size:13
Alignment explanation
Indices: 14915485--14915510 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14915475 GTTCTCCTTT
14915485 TATGATAGTGTTA
1 TATGATAGTGTTA
14915498 TATGATAGTGTTA
1 TATGATAGTGTTA
14915511 GGTTCGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (13 bp):
TATGATAGTGTTA
Found at i:14915560 original size:13 final size:13
Alignment explanation
Indices: 14915544--14915568 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14915534 CGATCATATT
14915544 ATTTTAAAATAAA
1 ATTTTAAAATAAA
14915557 ATTTTAAAATAA
1 ATTTTAAAATAA
14915569 TATAAAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATTTTAAAATAAA
Found at i:14915843 original size:25 final size:25
Alignment explanation
Indices: 14915809--14915883 Score: 150
Period size: 25 Copynumber: 3.0 Consensus size: 25
14915799 AAAAGAAAAG
14915809 AAAATAAAGAATAAGCAAATATAAC
1 AAAATAAAGAATAAGCAAATATAAC
14915834 AAAATAAAGAATAAGCAAATATAAC
1 AAAATAAAGAATAAGCAAATATAAC
14915859 AAAATAAAGAATAAGCAAATATAAC
1 AAAATAAAGAATAAGCAAATATAAC
14915884 TCAACAAATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (25 bp):
AAAATAAAGAATAAGCAAATATAAC
Found at i:14919918 original size:2 final size:2
Alignment explanation
Indices: 14919911--14919943 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14919901 TGGTTTTTCC
14919911 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14919944 ATGACCTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14920333 original size:2 final size:2
Alignment explanation
Indices: 14920322--14920350 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
14920312 ATTTTGTCTG
14920322 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14920351 GAATCAACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:14936498 original size:12 final size:12
Alignment explanation
Indices: 14936475--14936522 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 12
14936465 ATATATAATT
14936475 TTTTATTATTTAA
1 TTTTA-TATTTAA
14936488 TTTTATATTTATA
1 TTTTATATTTA-A
*
14936501 TATT-TATTTAA
1 TTTTATATTTAA
14936512 TTTTATATTTA
1 TTTTATATTTA
14936523 TATTAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 4 0.13
12 18 0.58
13 9 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTATATTTAA
Found at i:14936512 original size:24 final size:24
Alignment explanation
Indices: 14936480--14936525 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
14936470 TAATTTTTTA
14936480 TTATTTAATTTTATATTTATATAT
1 TTATTTAATTTTATATTTATATAT
14936504 TTATTTAATTTTATATTTATAT
1 TTATTTAATTTTATATTTATAT
14936526 TAAAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (24 bp):
TTATTTAATTTTATATTTATATAT
Found at i:14946843 original size:26 final size:25
Alignment explanation
Indices: 14946807--14946865 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
14946797 TGGTAAAATT
* * *
14946807 AAAAATAATTATAATTATAATTGATA
1 AAAAATTATTATAATAATAATT-AAA
*
14946833 AAAAATTATTATAATAATAGTTAAA
1 AAAAATTATTATAATAATAATTAAA
14946858 AAAAATTA
1 AAAAATTA
14946866 ATAAAAAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 10 0.34
26 19 0.66
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (25 bp):
AAAAATTATTATAATAATAATTAAA
Found at i:14946869 original size:23 final size:23
Alignment explanation
Indices: 14946803--14946869 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 23
14946793 ATTATGGTAA
* *
14946803 AATTAAAAATAATT-ATAATTAT
1 AATTAAAAAAAATTAATAATAAT
*
14946825 AATTGATAAAAAATTATTATAATAAT
1 AATT-AAAAAAAATTA--ATAATAAT
*
14946851 AGTTAAAAAAAATTAATAA
1 AATTAAAAAAAATTAATAA
14946870 AAAGTTTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
22 4 0.11
23 12 0.33
25 10 0.28
26 10 0.28
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (23 bp):
AATTAAAAAAAATTAATAATAAT
Found at i:14950682 original size:2 final size:2
Alignment explanation
Indices: 14950675--14950700 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14950665 AGCAGGCAAC
14950675 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14950701 CTGCCTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14951676 original size:2 final size:2
Alignment explanation
Indices: 14951664--14951693 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
14951654 AGTGTCAGGA
*
14951664 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14951694 GCAAAGGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:14951825 original size:13 final size:13
Alignment explanation
Indices: 14951807--14951860 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
14951797 TATATCTATG
14951807 AAATTTATAAAAA
1 AAATTTATAAAAA
*
14951820 AAATTTTTAAAAA
1 AAATTTATAAAAA
* *
14951833 TAATTTA-ATAAA
1 AAATTTATAAAAA
*
14951845 AACTTTAATAAAAA
1 AAATTT-ATAAAAA
14951859 AA
1 AA
14951861 TTAAATTAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
12 8 0.25
13 18 0.56
14 6 0.19
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATTTATAAAAA
Found at i:14952082 original size:21 final size:20
Alignment explanation
Indices: 14952058--14952099 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
14952048 ATGTAACAAA
14952058 AATTTTCGATTTATAAATTTT
1 AATTTTCGATTT-TAAATTTT
* *
14952079 AATTTTTGATTTTAATTTTT
1 AATTTTCGATTTTAAATTTT
14952099 A
1 A
14952100 TTTAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (20 bp):
AATTTTCGATTTTAAATTTT
Found at i:14952092 original size:13 final size:12
Alignment explanation
Indices: 14952074--14952106 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
14952064 CGATTTATAA
14952074 ATTTTAATTTTT
1 ATTTTAATTTTT
14952086 GATTTTAATTTTT
1 -ATTTTAATTTTT
14952099 A-TTTAATT
1 ATTTTAATT
14952107 ATTTCTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.35
12 1 0.05
13 12 0.60
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (12 bp):
ATTTTAATTTTT
Found at i:14952672 original size:21 final size:22
Alignment explanation
Indices: 14952631--14952673 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14952621 CAAATTTAAT
14952631 AAAATATTATTTTTTATAATAA
1 AAAATATTATTTTTTATAATAA
*
14952653 AAAATTTTATTTTTTA-AATAA
1 AAAATATTATTTTTTATAATAA
14952674 TTATATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AAAATATTATTTTTTATAATAA
Found at i:14954286 original size:21 final size:21
Alignment explanation
Indices: 14954262--14954312 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
14954252 TTCGAAATTA
*
14954262 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTAAAAT
14954283 ATAAAATATTATTTTTAAAAT
1 ATAAAATATTATTTTTAAAAT
14954304 AT-AAATATT
1 ATAAAATATT
14954313 TAAAAATATC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 7 0.24
21 22 0.76
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAAAATATTATTTTTAAAAT
Found at i:14954299 original size:20 final size:20
Alignment explanation
Indices: 14954261--14954312 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 20
14954251 ATTCGAAATT
14954261 AATAAAATATTATTTTTTAA
1 AATAAAATATTATTTTTTAA
14954281 ATATAAAATATTA-TTTTTAA
1 A-ATAAAATATTATTTTTTAA
14954301 AATATAAATATT
1 AATA-AAATATT
14954313 TAAAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.10
20 16 0.53
21 11 0.37
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
AATAAAATATTATTTTTTAA
Found at i:14959127 original size:15 final size:15
Alignment explanation
Indices: 14959107--14959135 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14959097 TCAAGAGTTG
14959107 ATTTTTATTTTCATA
1 ATTTTTATTTTCATA
14959122 ATTTTTATTTTCAT
1 ATTTTTATTTTCAT
14959136 TTTAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTATTTTCATA
Found at i:14965516 original size:5 final size:5
Alignment explanation
Indices: 14965506--14965537 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
14965496 AAATACCAAA
14965506 AAAAG AAAAG AAAAG AAAAG AAAAGG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAA-G AAAAG A
14965538 GCCACACTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:14980857 original size:21 final size:20
Alignment explanation
Indices: 14980798--14980858 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
14980788 ATTTTTATCT
14980798 TTTATTTAATTTTATTTTAAAA
1 TTTATTTAA-TTTA-TTTAAAA
* *
14980820 TTTATTTATATTCATTTACAA
1 TTTATTTA-ATTTATTTAAAA
14980841 TTTATTATAATTTATTTA
1 TTTATT-TAATTTATTTA
14980859 TTATTTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 20 0.59
22 13 0.38
23 1 0.03
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTATTTAATTTATTTAAAA
Found at i:15021893 original size:26 final size:26
Alignment explanation
Indices: 15021843--15021911 Score: 111
Period size: 26 Copynumber: 2.6 Consensus size: 26
15021833 CTGATATAAG
*
15021843 TCATATAACTGAAATTTGTAGAGTATT
1 TCATATAACTG-AATTTGTAGAGTATA
*
15021870 TCATATAACTGACTTTGTAGAGTATA
1 TCATATAACTGAATTTGTAGAGTATA
15021896 TCATATAACTGAATTT
1 TCATATAACTGAATTT
15021912 TGTCTAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 28 0.72
27 11 0.28
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (26 bp):
TCATATAACTGAATTTGTAGAGTATA
Found at i:15031492 original size:2 final size:2
Alignment explanation
Indices: 15031487--15031516 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15031477 TATTTTTCCA
15031487 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
15031517 TGTCTCTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:15034025 original size:19 final size:19
Alignment explanation
Indices: 15033997--15034033 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
15033987 AACGGCCGCA
15033997 AAATTACAATAATATCATT
1 AAATTACAATAATATCATT
*
15034016 AAATTGCAATAATATCAT
1 AAATTACAATAATATCAT
15034034 CATTCGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.03, T:0.35
Consensus pattern (19 bp):
AAATTACAATAATATCATT
Found at i:15034767 original size:23 final size:23
Alignment explanation
Indices: 15034739--15034796 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
15034729 TATTATAATT
*
15034739 TGATTTTGTTATTTAGTAATTT-A
1 TGATTTTGTTATTT-GAAATTTAA
15034762 TGATTTTG-TATTTGAAATTTAA
1 TGATTTTGTTATTTGAAATTTAA
* *
15034784 TAATTTTTTTATT
1 TGATTTTGTTATT
15034797 ATTTTAGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 6 0.20
22 12 0.40
23 12 0.40
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (23 bp):
TGATTTTGTTATTTGAAATTTAA
Found at i:15041881 original size:17 final size:17
Alignment explanation
Indices: 15041836--15041883 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
15041826 TCTCTTTTAT
15041836 TTTTGTTTTT-ATTAGG
1 TTTTGTTTTTAATTAGG
*
15041852 TTTTGGTTTTTAATTGGG
1 TTTT-GTTTTTAATTAGG
15041870 TTTTGTTTTTAATT
1 TTTTGTTTTTAATT
15041884 TCTTTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 4 0.14
17 16 0.55
18 9 0.31
ACGTcount: A:0.12, C:0.00, G:0.19, T:0.69
Consensus pattern (17 bp):
TTTTGTTTTTAATTAGG
Found at i:15043772 original size:18 final size:18
Alignment explanation
Indices: 15043749--15043784 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15043739 CGGTCAATGC
*
15043749 ACGGTTCGGTTCGGTCTG
1 ACGGTTCGGCTCGGTCTG
*
15043767 ACGGTTTGGCTCGGTCTG
1 ACGGTTCGGCTCGGTCTG
15043785 GGTGGTTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.22, G:0.39, T:0.33
Consensus pattern (18 bp):
ACGGTTCGGCTCGGTCTG
Found at i:15044694 original size:14 final size:14
Alignment explanation
Indices: 15044677--15044711 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
15044667 AGAAAAAAGG
15044677 AAAAGAAAGAAGAA
1 AAAAGAAAGAAGAA
*
15044691 AAAAAAAAGAAGAA
1 AAAAGAAAGAAGAA
*
15044705 AAGAGAA
1 AAAAGAA
15044712 GAATTCAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AAAAGAAAGAAGAA
Found at i:15044704 original size:17 final size:19
Alignment explanation
Indices: 15044665--15044701 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
15044655 AGATAAGGAT
15044665 GAAGAAAAAAGGAAAAGAAA
1 GAAGAAAAAA-GAAAAGAAA
15044685 GAAGAAAAAA-AAAAGAA
1 GAAGAAAAAAGAAAAGAA
15044702 GAAAAGAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (19 bp):
GAAGAAAAAAGAAAAGAAA
Found at i:15045090 original size:48 final size:48
Alignment explanation
Indices: 15044967--15045252 Score: 298
Period size: 48 Copynumber: 6.0 Consensus size: 48
15044957 TGAAAGTTTA
* ** ** * *
15044967 AAAAGCTCCTCTTAGCTGAGGCTCAACAAC-TTAAAATTTTTTTTTTTTG
1 AAAAGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAA--TTTCATCTTGG
* *
15045016 AAAAGGGCTCCTCTCAGCAAAAGCTCAATAACTTTAAAATTTCATCTTGG
1 AAAA--GCTCCTCTCAGCAAAGGCTCAACAACTTTAAAATTTCATCTTGG
* * *
15045066 AAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCATCTTGG
1 AAAAGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAATTTCATCTTGG
* * **
15045114 AAAAGCTCCTCTCAGCAGAGGCTCAATAACTTTAAAATTT--TCTTAAA
1 AAAAGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAATTTCATCTT-GG
*
15045161 AAAAGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAA--TC-TCAT-G
1 AAAAGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAATTTCATCTTGG
* *
15045205 AAAAGGCTCCTATCAGCAAAGGCTCAACAACTTTAAAATTTTATCTTG
1 AAAA-GCTCCTCTCAGCAAAGGCTCAACAACTTTAAAATTTCATCTTG
15045253 TTTTCAAATT
Statistics
Matches: 201, Mismatches: 26, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
44 4 0.02
45 33 0.16
46 7 0.03
47 36 0.18
48 79 0.39
49 4 0.02
50 11 0.05
51 21 0.10
52 6 0.03
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (48 bp):
AAAAGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAATTTCATCTTGG
Found at i:15045197 original size:95 final size:91
Alignment explanation
Indices: 15045014--15045246 Score: 315
Period size: 95 Copynumber: 2.5 Consensus size: 91
15045004 TTTTTTTTTT
* **
15045014 TGAAAAGGGCTCCTCTCAGCAAAAGCTCAATAACTTTAAAATTTCATCTTGGAAAAGCTCCTCTC
1 TGAAAA-GGCTCCTCTCAGCAAAGGCTCAATAACTTTAAAATTT--TCTTAAAAAAGCTCCTCTC
*
15045079 AACAGAGGCTCAACAACTTTAAAATCTCA
63 AACAAAGGCTCAACAACTTTAAAATCTCA
*
15045108 TCTTGGAAAA-GCTCCTCTCAGCAGAGGCTCAATAACTTTAAAATTTTCTTAAAAAAAGCTCCTC
1 ---T-GAAAAGGCTCCTCTCAGCAAAGGCTCAATAACTTTAAAATTTTCTT-AAAAAAGCTCCTC
*
15045172 TCAGCAAAGGCTCAACAACTTTAAAATCTCA
61 TCAACAAAGGCTCAACAACTTTAAAATCTCA
* *
15045203 TGAAAAGGCTCCTATCAGCAAAGGCTCAACAACTTTAAAATTTT
1 TGAAAAGGCTCCTCTCAGCAAAGGCTCAATAACTTTAAAATTTT
15045247 ATCTTGTTTT
Statistics
Matches: 124, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
91 5 0.04
92 35 0.28
94 4 0.03
95 40 0.32
96 34 0.27
97 1 0.01
98 5 0.04
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (91 bp):
TGAAAAGGCTCCTCTCAGCAAAGGCTCAATAACTTTAAAATTTTCTTAAAAAAGCTCCTCTCAAC
AAAGGCTCAACAACTTTAAAATCTCA
Found at i:15056345 original size:1 final size:1
Alignment explanation
Indices: 15056339--15056388 Score: 73
Period size: 1 Copynumber: 50.0 Consensus size: 1
15056329 TGTGTGTGAA
* * *
15056339 TTTTTTTTGTTTTTTTTTTTTATTTGTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
15056389 ACTAAAAATG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.02, C:0.00, G:0.04, T:0.94
Consensus pattern (1 bp):
T
Found at i:15057176 original size:190 final size:191
Alignment explanation
Indices: 15056851--15057224 Score: 644
Period size: 190 Copynumber: 2.0 Consensus size: 191
15056841 TTTATTTATT
*
15056851 AAAAAAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGGAATAATTCTTAAAATGTTC
1 AAAAAAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTTC
* *
15056916 CAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTTG
66 CAATACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCG
*
15056981 GAATACTTTTAGAATCTCATCTTT-GGAGG-CTTGAATTTATTTTTCGTAAAAAAATGTTAA
131 GAATACTTTTAGAATCTCATCTTTGGGAGGTC-TAAATTTATTTTTCGTAAAAAAATGTTAA
* * *
15057041 AAAAAAAATTATTCTCGAGAAAAATAAATTAAAGCCTTTTTATTGAAATAATTCTTAAAATGTTT
1 AAAAAAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTTC
* *
15057106 CAATACGTTGGTACCATTAAAAGAACTCTTTCTCACTTAGAGATTTCTTAAAGCATCTCTACTCG
66 CAATACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCG
15057171 GAATACTTTTAGAATCTCATCTTTGGGAGGTCTAAATTTATTTTTCGTAAAAAA
131 GAATACTTTTAGAATCTCATCTTTGGGAGGTCTAAATTTATTTTTCGTAAAAAA
15057225 TTATGTCATG
Statistics
Matches: 173, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
190 146 0.84
191 26 0.15
192 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (191 bp):
AAAAAAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTTC
CAATACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCG
GAATACTTTTAGAATCTCATCTTTGGGAGGTCTAAATTTATTTTTCGTAAAAAAATGTTAA
Found at i:15057299 original size:12 final size:12
Alignment explanation
Indices: 15057282--15057315 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15057272 TTTTCAAAAA
15057282 TTTTATTAATTG
1 TTTTATTAATTG
*
15057294 TTTTATTAATTT
1 TTTTATTAATTG
15057306 TTTTAATTAA
1 TTTT-ATTAA
15057316 AATTAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (12 bp):
TTTTATTAATTG
Found at i:15057863 original size:16 final size:15
Alignment explanation
Indices: 15057840--15057887 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
15057830 TTTAATATGC
* *
15057840 ATAAATATTAATAAA
1 ATAAATATAAAAAAA
15057855 ATAATATATAAAAAAA
1 ATAA-ATATAAAAAAA
*
15057871 ATAAAAATTAAAAAAA
1 ATAAATA-TAAAAAAA
15057887 A
1 A
15057888 ATTTTTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 6 0.21
16 22 0.79
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (15 bp):
ATAAATATAAAAAAA
Found at i:15057883 original size:15 final size:15
Alignment explanation
Indices: 15057840--15057886 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
15057830 TTTAATATGC
*
15057840 ATAAATATTAATAAA
1 ATAAATATTAAAAAA
*
15057855 ATAATATATAAAAAAA
1 ATAA-ATATTAAAAAA
*
15057871 ATAAAAATTAAAAAA
1 ATAAATATTAAAAAA
15057886 A
1 A
15057887 AATTTTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAATATTAAAAAA
Found at i:15058916 original size:12 final size:12
Alignment explanation
Indices: 15058884--15058924 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
15058874 AAAAAAATTT
15058884 AAATAAATAATA
1 AAATAAATAATA
15058896 ATAAT-AATAATA
1 A-AATAAATAATA
*
15058908 AAATAAATAAAA
1 AAATAAATAATA
15058920 AAATA
1 AAATA
15058925 GTGTTTACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 3 0.12
12 20 0.77
13 3 0.12
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAATAAATAATA
Found at i:15059748 original size:19 final size:19
Alignment explanation
Indices: 15059724--15059786 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
15059714 GTGGCATCTT
15059724 TTTTTTTTTTTCATTTTCA
1 TTTTTTTTTTTCATTTTCA
*** *
15059743 TTTTTTTTTTAGTTTTTGA
1 TTTTTTTTTTTCATTTTCA
* *
15059762 -TTTTTTGTTTCATTTTTA
1 TTTTTTTTTTTCATTTTCA
15059780 TTTTTTT
1 TTTTTTT
15059787 AAAATTTTTT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
18 13 0.38
19 21 0.62
ACGTcount: A:0.10, C:0.05, G:0.05, T:0.81
Consensus pattern (19 bp):
TTTTTTTTTTTCATTTTCA
Found at i:15059796 original size:37 final size:37
Alignment explanation
Indices: 15059725--15059796 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
15059715 TGGCATCTTT
* ***
15059725 TTTTTTTTTTCATTTTCATTTTTTTTTTAGTTTTTGA
1 TTTTTTGTTTCATTTTCATTTTTTTAAAAGTTTTTGA
* *
15059762 TTTTTTGTTTCATTTTTATTTTTTTAAAATTTTTT
1 TTTTTTGTTTCATTTTCATTTTTTTAAAAGTTTTT
15059797 TACATTTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.14, C:0.04, G:0.04, T:0.78
Consensus pattern (37 bp):
TTTTTTGTTTCATTTTCATTTTTTTAAAAGTTTTTGA
Found at i:15063538 original size:17 final size:18
Alignment explanation
Indices: 15063516--15063549 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
15063506 TTTTTGGCAT
15063516 TCAAATTTTC-ATCAACC
1 TCAAATTTTCAATCAACC
15063533 TCAAATTTTCAATCAAC
1 TCAAATTTTCAATCAAC
15063550 ATTCAAGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.38, C:0.26, G:0.00, T:0.35
Consensus pattern (18 bp):
TCAAATTTTCAATCAACC
Found at i:15064209 original size:20 final size:20
Alignment explanation
Indices: 15064168--15064208 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
15064158 TTTGATTGTG
*
15064168 TTATATATTAATTTATAATT
1 TTATATATGAATTTATAATT
15064188 TTATATATGAATTT-TAATT
1 TTATATATGAATTTATAATT
15064207 TT
1 TT
15064209 TTTTGTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTATATATGAATTTATAATT
Found at i:15064463 original size:25 final size:26
Alignment explanation
Indices: 15064434--15064482 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
15064424 TAAAAAATAA
*
15064434 AAAATATAGGTTTGAAAA-TTTTATT
1 AAAATATAAGTTTGAAAACTTTTATT
15064459 AAAATATAAGTTTGAAAACTTTTA
1 AAAATATAAGTTTGAAAACTTTTA
15064483 ATTTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41
Consensus pattern (26 bp):
AAAATATAAGTTTGAAAACTTTTATT
Found at i:15066550 original size:16 final size:16
Alignment explanation
Indices: 15066525--15066568 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
15066515 TCTAGCATCT
*
15066525 TTTTATAATATTATTA
1 TTTTAAAATATTATTA
15066541 TTTTAAAATATTA--A
1 TTTTAAAATATTATTA
15066555 -TTTAAAATA-TATTA
1 TTTTAAAATATTATTA
15066569 CTCTAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 2 0.08
13 9 0.36
14 2 0.08
16 12 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTAAAATATTATTA
Found at i:15066988 original size:29 final size:29
Alignment explanation
Indices: 15066926--15066988 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
15066916 GTATTTAAAA
* *
15066926 AATATGTTTATTTTTTATACTTAAATGCT
1 AATATATTTATTTTTTATACTTAAATGAT
* *
15066955 TATATATTTATTTTTTATTACTTTAAT-AT
1 AATATATTTATTTTTTA-TACTTAAATGAT
15066984 AATAT
1 AATAT
15066989 TGTTATAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
29 20 0.71
30 8 0.29
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (29 bp):
AATATATTTATTTTTTATACTTAAATGAT
Found at i:15068287 original size:18 final size:18
Alignment explanation
Indices: 15068264--15068388 Score: 96
Period size: 18 Copynumber: 6.9 Consensus size: 18
15068254 ATGGTTATTA
15068264 TCCACCTCAAATGTATCC
1 TCCACCTCAAATGTATCC
*
15068282 TCCACCTCCTCAAATATATCC
1 TCCA---CCTCAAATGTATCC
**
15068303 TCCACCTCAAATGTATTAG
1 TCCACCTCAAATGTA-TCC
* * *
15068322 T-TACCACAAATGTACCC
1 TCCACCTCAAATGTATCC
* *
15068339 TCCACCACAAATGTATCA
1 TCCACCTCAAATGTATCC
* *
15068357 T---CCTTAAATATATCC
1 TCCACCTCAAATGTATCC
15068372 TCCACCTCAAATGTATC
1 TCCACCTCAAATGTATC
15068389 AAGAACAAAG
Statistics
Matches: 81, Mismatches: 18, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
15 11 0.14
17 1 0.01
18 50 0.62
19 2 0.02
21 17 0.21
ACGTcount: A:0.32, C:0.34, G:0.05, T:0.29
Consensus pattern (18 bp):
TCCACCTCAAATGTATCC
Found at i:15068294 original size:21 final size:21
Alignment explanation
Indices: 15068268--15068310 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
15068258 TTATTATCCA
*
15068268 CCTCAAATGTATCCTCCACCT
1 CCTCAAATATATCCTCCACCT
15068289 CCTCAAATATATCCTCCACCT
1 CCTCAAATATATCCTCCACCT
15068310 C
1 C
15068311 AAATGTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.44, G:0.02, T:0.28
Consensus pattern (21 bp):
CCTCAAATATATCCTCCACCT
Found at i:15068383 original size:33 final size:34
Alignment explanation
Indices: 15068288--15068389 Score: 125
Period size: 33 Copynumber: 3.0 Consensus size: 34
15068278 ATCCTCCACC
*
15068288 TCCTCAAATATATCCTCCACCTCAAATGTATTAG
1 TCCTCAAATATATCCTCCACCTCAAATGTATCAG
* * * *
15068322 TTACCACAAATGTACCCTCCACCACAAATGTATCA-
1 -T-CCTCAAATATATCCTCCACCTCAAATGTATCAG
*
15068357 TCCTTAAATATATCCTCCACCTCAAATGTATCA
1 TCCTCAAATATATCCTCCACCTCAAATGTATCA
15068390 AGAACAAAGG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
33 27 0.48
34 1 0.02
35 1 0.02
36 27 0.48
ACGTcount: A:0.34, C:0.31, G:0.05, T:0.29
Consensus pattern (34 bp):
TCCTCAAATATATCCTCCACCTCAAATGTATCAG
Found at i:15069002 original size:13 final size:13
Alignment explanation
Indices: 15068984--15069008 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15068974 TTTTCCCTTT
15068984 TTTTAATTTTTTG
1 TTTTAATTTTTTG
15068997 TTTTAATTTTTT
1 TTTTAATTTTTT
15069009 ATTAGATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (13 bp):
TTTTAATTTTTTG
Found at i:15071343 original size:3 final size:3
Alignment explanation
Indices: 15071335--15071401 Score: 107
Period size: 3 Copynumber: 22.3 Consensus size: 3
15071325 GCCTAATCAA
* * *
15071335 TGT TGT TGT TGT TGT TGT TAT TGT TAT TAT TGT TGT TGT TGT TGT TGT
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
15071383 TGT TGT TGT TGT TGT TGT T
1 TGT TGT TGT TGT TGT TGT T
15071402 ATTATTATTA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.04, C:0.00, G:0.28, T:0.67
Consensus pattern (3 bp):
TGT
Found at i:15072199 original size:26 final size:25
Alignment explanation
Indices: 15072145--15072220 Score: 64
Period size: 26 Copynumber: 2.8 Consensus size: 25
15072135 TTCCTTTCTT
*
15072145 TTTTTTATTTTACTTTTA-TGTTTACA
1 TTTTTTA-TTTA-TTTTATTGTTTAAA
*
15072171 TTTTTTATTTATTTTATTTTTTAGAA
1 TTTTTTATTTATTTTATTGTTTA-AA
*
15072197 TTTTCTTTTATTATTATTATTGTT
1 TTTT-TTAT-TTATT-TTATTGTT
15072221 GTTGCTGTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
24 5 0.12
25 9 0.22
26 12 0.29
27 3 0.07
28 5 0.12
29 7 0.17
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.72
Consensus pattern (25 bp):
TTTTTTATTTATTTTATTGTTTAAA
Found at i:15072200 original size:25 final size:25
Alignment explanation
Indices: 15072146--15072214 Score: 61
Period size: 25 Copynumber: 2.7 Consensus size: 25
15072136 TCCTTTCTTT
*
15072146 TTTTTATTTTACTTTTA-TGTTTACAT
1 TTTTTA-TTTA-TTTTATTGTTTACAA
* *
15072172 TTTTTATTTATTTTATTTTTTAGAA
1 TTTTTATTTATTTTATTGTTTACAA
15072197 TTTTCT-TTTATTATTATT
1 TTTT-TATTTATT-TTATT
15072215 ATTGTTGTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
24 5 0.14
25 20 0.54
26 12 0.32
ACGTcount: A:0.20, C:0.04, G:0.03, T:0.72
Consensus pattern (25 bp):
TTTTTATTTATTTTATTGTTTACAA
Found at i:15075116 original size:15 final size:16
Alignment explanation
Indices: 15075086--15075121 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 16
15075076 TTTATTAATA
15075086 TTTTTATTGAATTATTG
1 TTTTTATT-AATTATTG
15075103 TTTTTATT-ATTATTG
1 TTTTTATTAATTATTG
15075118 TTTT
1 TTTT
15075122 ATCGAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 11 0.58
17 8 0.42
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.72
Consensus pattern (16 bp):
TTTTTATTAATTATTG
Found at i:15075616 original size:16 final size:16
Alignment explanation
Indices: 15075595--15075625 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15075585 ATTTATTTTT
*
15075595 ATTTATTTCAACAAAA
1 ATTTATTCCAACAAAA
15075611 ATTTATTCCAACAAA
1 ATTTATTCCAACAAA
15075626 TATAAATACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTTATTCCAACAAAA
Found at i:15076359 original size:12 final size:11
Alignment explanation
Indices: 15076342--15076371 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
15076332 GTAATGAGTA
*
15076342 TTTTTTTTATC
1 TTTTTTTTACC
15076353 TTTTTTTTACC
1 TTTTTTTTACC
15076364 TTTTTTTT
1 TTTTTTTT
15076372 GTAAGGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTTTACC
Found at i:15076811 original size:48 final size:48
Alignment explanation
Indices: 15076720--15076970 Score: 277
Period size: 48 Copynumber: 5.2 Consensus size: 48
15076710 AAAAAAAATT
* * * *
15076720 AAAAAGCTCATTTAATCAGAGGCTTAACAACTTTAAAAATTCATCTTAA
1 AAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTT-AAAATTCATCTTAA
*
15076769 AAAAAGCTCCTCTAAGCATAGGCTCAACAACTTTAAAATTCATCTTGAA
1 AAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCATCTT-AA
* * * * *
15076818 AAAAAGCTCATCTAAACTGAGGCTCAACAATTTTAAAATTCATCTTGA
1 AAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCATCTTAA
** * * * **
15076866 AAAAAGCTCCTCTAAGTGGATGCTCAATAGCTTTAAAATTCATCTTGG
1 AAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCATCTTAA
** * * *
15076914 AAAAAGCTCCTCTAAGTGGATGCTCAATAACTTTAAAATTCATCTTAG
1 AAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCATCTTAA
*
15076962 AAAAGGCTC
1 AAAAAGCTC
15076971 AACAACTTTA
Statistics
Matches: 178, Mismatches: 23, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
48 106 0.60
49 72 0.40
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (48 bp):
AAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCATCTTAA
Found at i:15076891 original size:97 final size:96
Alignment explanation
Indices: 15076720--15077312 Score: 302
Period size: 97 Copynumber: 6.3 Consensus size: 96
15076710 AAAAAAAATT
* * * * * *
15076720 AAAAAGCTCATTTAATCAGAGGCTTAACAACTTTAAAAATTCATCTTAAAAAAAGCTCCTCTAAG
1 AAAAAGCTCATCTAAACTGAGGCTCAACAA-TTTTAAAATTCATCTTGAAAAAAGCTCCTCTAAG
*
15076785 CATAGGCTCAACAACTTTAAAATTCATCTTGAA
65 CAGAGGCTCAACAACTTTAAAATTCATCTTG-A
*
15076818 AAAAAGCTCATCTAAACTGAGGCTCAACAATTTTAAAATTCATCTTGAAAAAAGCTCCTCTAAGT
1 AAAAAGCTCATCTAAACTGAGGCTCAACAATTTTAAAATTCATCTTGAAAAAAGCTCCTCTAAGC
* * * * *
15076883 GGATGCTCAATAGCTTTAAAATTCATCTTGG
66 AGAGGCTCAACAACTTTAAAATTCATCTTGA
* * * * * * *
15076914 AAAAAGCTCCTCT-AAGTGGATGCTCAATAACTTTAAAATTCATCTT-AGAAAAG--GCTC-AA-
1 AAAAAGCTCATCTAAACT-GAGGCTCAACAATTTTAAAATTCATCTTGAAAAAAGCTCCTCTAAG
* * ****
15076973 CA-A--CTTTAA-AA--TT--CATT--TTGGAA
65 CAGAGGC-TCAACAACTTTAAAATTCATCTTGA
* ** * * ** ** * * * *
15076996 AAG--GCTTTTCTAAGCAGAGGCTCAACAA-TTTTAAAAATTCAT-AT-TGGAAAAG--CTCTTC
1 AAAAAGCTCATCTAAACTGAGGCT---CAACAATTTTAAAAT--TCATCTTGAAAAAAGCTCCTC
*
15077054 TAAGTAGAGGCTCAACAACTTTAAAGATTCATCTTGA
61 TAAGCAGAGGCTCAACAACTTTAAA-ATTCATCTTGA
* * * * * ** *
15077091 GAAAAGCTCCTCT-AAGTAGAGGCAT-AATAACTTTAAAGATTCATCTTGGGAAAGGCTCCTCTA
1 AAAAAGCTCATCTAAACT-GAGGC-TCAACAATTTTAAA-ATTCATCTTGAAAAAAGCTCCTCTA
* *
15077154 AGCAGAGGCTCAATAATTTTAAAAATTCATCTTG-
63 AGCAGAGGCTCAACAACTTT-AAAATTCATCTTGA
* * * * * * * *
15077188 AAAAAGCTTATCTAAGCAGAGGCTTAACAACTTTAAAGATTCATCTTGGAAAAGGCTCATCTAAG
1 AAAAAGCTCATCTAAACTGAGGCTCAACAATTTTAAA-ATTCATCTTGAAAAAAGCTCCTCTAAG
* *
15077253 CAGAGGCTAAACAACTTTAAATATTCATCTTGG
65 CAGAGGCTCAACAACTTTAAA-ATTCATCTTGA
* *
15077286 AAAAAGCACATCTAAACAGAGGCTCAA
1 AAAAAGCTCATCTAAACTGAGGCTCAA
15077313 TGACTTTAAA
Statistics
Matches: 364, Mismatches: 92, Indels: 78
0.68 0.17 0.15
Matches are distributed among these distances:
80 11 0.03
81 1 0.00
82 9 0.02
83 10 0.03
84 6 0.02
85 1 0.00
86 3 0.01
87 3 0.01
88 5 0.01
89 3 0.01
90 3 0.01
92 2 0.01
93 6 0.02
94 3 0.01
95 18 0.05
96 47 0.13
97 145 0.40
98 85 0.23
99 3 0.01
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.28
Consensus pattern (96 bp):
AAAAAGCTCATCTAAACTGAGGCTCAACAATTTTAAAATTCATCTTGAAAAAAGCTCCTCTAAGC
AGAGGCTCAACAACTTTAAAATTCATCTTGA
Found at i:15076978 original size:32 final size:32
Alignment explanation
Indices: 15076935--15077001 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
15076925 CTAAGTGGAT
*
15076935 GCTCAATAACTTTAAAATTCATCTTAGAAAAG
1 GCTCAACAACTTTAAAATTCATCTTAGAAAAG
* *
15076967 GCTCAACAACTTTAAAATTCATTTTGGAAAAG
1 GCTCAACAACTTTAAAATTCATCTTAGAAAAG
15076999 GCT
1 GCT
15077002 TTTCTAAGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.31
Consensus pattern (32 bp):
GCTCAACAACTTTAAAATTCATCTTAGAAAAG
Found at i:15077020 original size:80 final size:81
Alignment explanation
Indices: 15076887--15077047 Score: 198
Period size: 80 Copynumber: 2.0 Consensus size: 81
15076877 CTAAGTGGAT
* * ** * *
15076887 GCTCAATAGCTTTAAAATTCATCTTGGAAAAAGCTCCTCTAAGTGGATGCTCAATAACTTT-AAA
1 GCTCAACAACTTTAAAATTCATCTTGGAAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAA
*
15076951 ATTCATCTTAGAAAAG
66 ATTCATATTAGAAAAG
* * ** *
15076967 GCTCAACAACTTTAAAATTCATTTTGGAAAAGGCTTTTCTAAGCAGAGGCTCAACAATTTTAAAA
1 GCTCAACAACTTTAAAATTCATCTTGGAAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAA
*
15077032 ATTCATATTGGAAAAG
66 ATTCATATTAGAAAAG
15077048 CTCTTCTAAG
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 50 0.75
81 17 0.25
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (81 bp):
GCTCAACAACTTTAAAATTCATCTTGGAAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAA
ATTCATATTAGAAAAG
Found at i:15077047 original size:49 final size:49
Alignment explanation
Indices: 15076965--15077330 Score: 427
Period size: 49 Copynumber: 7.5 Consensus size: 49
15076955 ATCTTAGAAA
* **
15076965 AGGCTCAACAACTTT-AAAATTCATTTTGGAAAAGGCTTTTCTAAGCAG
1 AGGCTCAACAACTTTAAAAATTCATCTTGGAAAAGGCTCATCTAAGCAG
* * * *
15077013 AGGCTCAACAATTTTAAAAATTCATATTGGAAAA-GCTCTTCTAAGTAG
1 AGGCTCAACAACTTTAAAAATTCATCTTGGAAAAGGCTCATCTAAGCAG
* * *
15077061 AGGCTCAACAACTTTAAAGATTCATCTTGAGAAAA-GCTCCTCTAAGTAG
1 AGGCTCAACAACTTTAAAAATTCATCTTG-GAAAAGGCTCATCTAAGCAG
* * * *
15077110 AGGCAT-AATAACTTTAAAGATTCATCTTGGGAAAGGCTCCTCTAAGCAG
1 AGGC-TCAACAACTTTAAAAATTCATCTTGGAAAAGGCTCATCTAAGCAG
* * * *
15077159 AGGCTCAATAATTTTAAAAATTCATCTT-GAAAAAGCTTATCTAAGCAG
1 AGGCTCAACAACTTTAAAAATTCATCTTGGAAAAGGCTCATCTAAGCAG
* *
15077207 AGGCTTAACAACTTTAAAGATTCATCTTGGAAAAGGCTCATCTAAGCAG
1 AGGCTCAACAACTTTAAAAATTCATCTTGGAAAAGGCTCATCTAAGCAG
* * * * *
15077256 AGGCTAAACAACTTTAAATATTCATCTTGGAAAAAGCACATCTAAACAG
1 AGGCTCAACAACTTTAAAAATTCATCTTGGAAAAGGCTCATCTAAGCAG
**
15077305 AGGCTCAATGACTTTAAAAATCTCAT
1 AGGCTCAACAACTTTAAAAAT-TCAT
15077331 TTATTCTCGA
Statistics
Matches: 279, Mismatches: 32, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
48 97 0.35
49 177 0.63
50 5 0.02
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (49 bp):
AGGCTCAACAACTTTAAAAATTCATCTTGGAAAAGGCTCATCTAAGCAG
Found at i:15077251 original size:146 final size:145
Alignment explanation
Indices: 15076965--15077330 Score: 486
Period size: 146 Copynumber: 2.5 Consensus size: 145
15076955 ATCTTAGAAA
* * ** *
15076965 AGGCTCAACAACTTTAAAATTCATTTTGGAAAAGGCTTTTCTAAGCAGAGGCTCAACAATTTTAA
1 AGGCTAAACAACTTTAAAATTCATCTTGGAAAAGGCTCATCTAAGCAGAGGCTCAATAATTTTAA
* *
15077030 AAATTCATATTGGAAAAGCTCTTCTAAGTAGAGGCTCAACAACTTTAAAGATTCATCTTGAGAAA
66 AAATTCATATTGAAAAAGCTCTTCTAAGCAGAGGCTCAACAACTTTAAAGATTCATCTTGAGAAA
* *
15077095 AGCTCCTCTAAGTAG
131 AGCTCATCTAAGCAG
* * *
15077110 AGGC-ATAATAACTTTAAAGATTCATCTTGGGAAAGGCTCCTCTAAGCAGAGGCTCAATAATTTT
1 AGGCTA-AACAACTTTAAA-ATTCATCTTGGAAAAGGCTCATCTAAGCAGAGGCTCAATAATTTT
* *
15077174 AAAAATTCATCTTGAAAAAGCT-TATCTAAGCAGAGGCTTAACAACTTTAAAGATTCATCTTG-G
64 AAAAATTCATATTGAAAAAGCTCT-TCTAAGCAGAGGCTCAACAACTTTAAAGATTCATCTTGAG
15077237 AAAAGGCTCATCTAAGCAG
128 AAAA-GCTCATCTAAGCAG
* * * * *
15077256 AGGCTAAACAACTTTAAATATTCATCTTGGAAAAAGCACATCTAAACAGAGGCTCAATGACTTTA
1 AGGCTAAACAACTTTAAA-ATTCATCTTGGAAAAGGCTCATCTAAGCAGAGGCTCAATAATTTTA
15077321 AAAATCTCAT
65 AAAAT-TCAT
15077331 TTATTCTCGA
Statistics
Matches: 193, Mismatches: 22, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
145 21 0.11
146 167 0.87
147 5 0.03
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (145 bp):
AGGCTAAACAACTTTAAAATTCATCTTGGAAAAGGCTCATCTAAGCAGAGGCTCAATAATTTTAA
AAATTCATATTGAAAAAGCTCTTCTAAGCAGAGGCTCAACAACTTTAAAGATTCATCTTGAGAAA
AGCTCATCTAAGCAG
Found at i:15080406 original size:199 final size:199
Alignment explanation
Indices: 15079870--15080599 Score: 742
Period size: 201 Copynumber: 3.6 Consensus size: 199
15079860 GAATCTACTG
* ** * * * * *
15079870 TGACAATAAAATAAAATATCACATTATGCCTTTTTTTT-TTACGTTAGTTTTCATAAGTTATATA
1 TGACAATAAAATCAAACGTCACCTTATG--TTTTTTTTGTGACGTTAGTTTTCATTAGCTATTTA
* ** * *
15079934 T-AAAAAAAAATCCATTAAAGGCTATAATTGTCACAAAATAAATGATAAAATC-ATATATGTTAG
64 TGAAAAAAACAT-CATTAAAGGCTATAATCATCATAAAATAAATGATAAAATCTA-ATATATTAG
* ** * ** * * *
15079997 TAATGAAAGGTAGATCGTCACAGTATTGGTGACACAATAATCATCACCAATAATTGTAAGATAAT
127 TGACAAAAGGTAAATAATCACAATAATGGTGACACAATTATCATCACCAATAATTGTAAGATAAT
** * *
15080062 GTTTATTG
192 GTCAAATA
* * *
15080070 TAACAATAAAATCAAACGTCAACTTATGCTTTAATTTTTGTGACATTAGTTTTCATTAGCTATTT
1 TGACAATAAAATCAAACGTCACCTTATG-TTT--TTTTTGTGACGTTAGTTTTCATTAGCTATTT
* *
15080135 ATGAAAAAAA-GTCATTAAAGGTTATAATCATCATAAAATAAATGATAAAATCTAATATATTAGT
63 ATGAAAAAAACATCATTAAAGGCTATAATCATCATAAAATAAATGATAAAATCTAATATATTAGT
* ** * ** *
15080199 GACAAAAGGTTAATAATCATTATAATGGTGACATAATTATTGTCACCAATTATTGTAAGATAATG
128 GACAAAAGGTAAATAATCACAATAATGGTGACACAATTATCATCACCAATAATTGTAAGATAATG
15080264 TCAAATA
193 TCAAATA
* * *
15080271 TGACAATAAAATCAAATGTTACCTTATG-TTTTTTTGTGACGTTAGCTTTCATTAGCTATTTATG
1 TGACAATAAAATCAAACGTCACCTTATGTTTTTTTTGTGACGTTAGTTTTCATTAGCTATTTATG
* * * *
15080335 AAGAAAAACATCATTGAAGGCTATAATCATCATAAAATAAATGATAAATTCTTATATATTAGTGC
66 AA-AAAAACATCATTAAAGGCTATAATCATCATAAAATAAATGATAAAATCTAATATATTAGTGA
** * * * * * *
15080400 CAAAAGGTAAATTGTGACAATACTTGTGACACAATTATCATTACAAATGATTGTAAGATAATGTC
130 CAAAAGGTAAATAATCACAATAATGGTGACACAATTATCATCACCAATAATTGTAAGATAATGTC
15080465 AAA-A
195 AAATA
* * *
15080469 GTGATAATAAAAAT-AAACATCACATTATGCTTTATTTTTTGTGACGTTAGTTTTCATT-GACTA
1 -TGACAAT-AAAATCAAACGTCACCTTATG--TT-TTTTTTGTGACGTTAGTTTTCATTAG-CTA
* *
15080532 TTAATG-AAAAAACATCATTAAAGGCTATAATCATCACAAAATAAATGATAAAATCTAATATATT
60 TTTATGAAAAAAACATCATTAAAGGCTATAATCATCATAAAATAAATGATAAAATCTAATATATT
15080596 -GTGA
125 AGTGA
15080600 TGAAAAGTAA
Statistics
Matches: 441, Mismatches: 75, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
197 34 0.08
198 6 0.01
199 127 0.29
200 30 0.07
201 179 0.41
202 27 0.06
203 38 0.09
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (199 bp):
TGACAATAAAATCAAACGTCACCTTATGTTTTTTTTGTGACGTTAGTTTTCATTAGCTATTTATG
AAAAAAACATCATTAAAGGCTATAATCATCATAAAATAAATGATAAAATCTAATATATTAGTGAC
AAAAGGTAAATAATCACAATAATGGTGACACAATTATCATCACCAATAATTGTAAGATAATGTCA
AATA
Found at i:15081130 original size:5 final size:5
Alignment explanation
Indices: 15081122--15081146 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
15081112 GCAAAGCAAG
15081122 CCAAA CCAAA CCAAA CCAAA CCAAA
1 CCAAA CCAAA CCAAA CCAAA CCAAA
15081147 TGTAGAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.40, G:0.00, T:0.00
Consensus pattern (5 bp):
CCAAA
Found at i:15082890 original size:59 final size:58
Alignment explanation
Indices: 15082678--15083127 Score: 548
Period size: 58 Copynumber: 7.7 Consensus size: 58
15082668 TAAAATTCCA
* * *
15082678 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATTAATTTTCCTTAAAAAGAAATTTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
**
15082736 AAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTT
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
* ** * *
15082793 CAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATTAATTTTTCTTAAAAATAAATTTTT
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
* * *
15082851 AAAAAAATGGTTTTTGAGGGAAATTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTTTT
1 AAAAAAAT-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA--TTTTT
* ** * **
15082912 AAAAAAA-A-TTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTT
* *
15082970 AAAAAAATATTTTTG-GGAAAAAGTTGAAAGTACCAATTTTGCTTAAAAATAAATTTTT
1 AAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
** * * *
15083028 AAAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
1 AAAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
* *
15083088 AAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
15083128 TCCTGCACAA
Statistics
Matches: 340, Mismatches: 41, Indels: 22
0.84 0.10 0.05
Matches are distributed among these distances:
57 53 0.16
58 145 0.43
59 50 0.15
60 78 0.23
61 14 0.04
ACGTcount: A:0.45, C:0.06, G:0.14, T:0.36
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
Found at i:15082920 original size:15 final size:16
Alignment explanation
Indices: 15082894--15082923 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15082884 TCAATTTTCC
15082894 TTAAAAATAAATTTTT
1 TTAAAAATAAATTTTT
15082910 TTAAAAA-AAATTTT
1 TTAAAAATAAATTTT
15082924 AAGGAAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAAATAAATTTTT
Found at i:15086155 original size:10 final size:11
Alignment explanation
Indices: 15086140--15086166 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
15086130 GAAGATGATG
15086140 AAAAAAATAAA
1 AAAAAAATAAA
15086151 AAAAAAATAAA
1 AAAAAAATAAA
15086162 AAAAA
1 AAAAA
15086167 GGAAAGAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:15086179 original size:17 final size:18
Alignment explanation
Indices: 15086152--15086200 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
15086142 AAAAATAAAA
15086152 AAAAAAT-AAAAAAAAGG
1 AAAAAATGAAAAAAAAGG
* *
15086169 AAAGAA-GAAAAAAAATG
1 AAAAAATGAAAAAAAAGG
15086186 AAAAAATGAAAAAAA
1 AAAAAATGAAAAAAA
15086201 GATTCAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 19 0.70
18 8 0.30
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (18 bp):
AAAAAATGAAAAAAAAGG
Found at i:15087800 original size:41 final size:41
Alignment explanation
Indices: 15087742--15087989 Score: 424
Period size: 41 Copynumber: 6.0 Consensus size: 41
15087732 ATGATTGTCA
15087742 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
15087783 AGGAGCAATTTATTTTTCAAAGTCGTGGTGTCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
15087824 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
15087865 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTT-TCAAAGTCGTGGTGCCTCTGTTTAG
* *
15087907 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTTTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
15087948 AGGAGCAATTTACTTTTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
15087989 A
1 A
15087990 AAAGCTTTAA
Statistics
Matches: 194, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
41 154 0.79
42 40 0.21
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:15087981 original size:124 final size:123
Alignment explanation
Indices: 15087742--15087989 Score: 424
Period size: 124 Copynumber: 2.0 Consensus size: 123
15087732 ATGATTGTCA
* *
15087742 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTC
* *
15087807 GTGGTGTCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAG
66 GTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGAGCCTCTATTTAG
15087865 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGT
1 AGGAGCAATTTACTTT-TCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGT
* * *
15087930 CGTGGTGCCTTTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTTGAGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGAGCCTCTATTTAG
15087989 A
1 A
15087990 AAAGCTTTAA
Statistics
Matches: 117, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
123 16 0.14
124 101 0.86
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (123 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTC
GTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGAGCCTCTATTTAG
Done.