genome.fa.s194.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168019.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_273, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40397

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1048--1100	26	2.0	26	92	7	90	26	22	20	30	1.98
1944--1994	26	2.0	26	92	0	84	25	23	19	31	1.98
280--2613	896	2.6	897	86	4	3162	26	23	23	26	2.00
7892--8106	110	2.0	110	100	0	430	26	19	27	26	1.99
8896--8948	26	2.0	26	89	7	81	28	16	24	30	1.97
10377--10770	45	8.7	46	73	8	220	17	30	31	21	1.96
10376--10588	91	2.4	90	82	4	250	15	31	31	21	1.94
10577--10766	90	2.1	90	85	2	249	19	28	31	20	1.97
10623--10814	87	2.2	89	79	6	203	19	32	29	19	1.96
14906--15972	45	23.7	45	71	6	475	18	30	30	21	1.97
15339--15654	134	2.3	135	76	5	316	17	29	31	21	1.96
21886--22724	45	18.9	44	67	11	181	19	29	29	22	1.98
21859--22475	90	7.0	90	70	6	251	19	29	28	22	1.98
22320--22476	83	1.9	83	85	0	215	19	27	31	22	1.97
22513--22685	90	1.9	90	84	0	229	19	30	29	20	1.97
22403--22658	135	1.9	135	80	1	298	18	29	30	21	1.97
22660--22745	45	1.9	45	88	4	129	19	30	29	20	1.97
22668--22761	45	2.1	45	81	0	107	21	30	27	20	1.98
27149--27576	215	2.0	214	89	2	653	18	22	31	27	1.97
35271--35331	26	2.3	26	88	0	86	24	18	26	31	1.97
38321--38370	26	1.9	26	100	0	100	28	16	26	30	1.96
38317--38377	26	2.3	26	85	0	95	27	21	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38177--38548	197	1.9	197	82	4	464	22	27	26	23	1.99
39321--39983	45	14.7	44	72	7	307	19	29	29	21	1.98
39411--39978	135	4.2	134	73	7	407	19	29	29	21	1.98
39656--40008	180	2.0	180	83	0	445	19	29	30	20	1.97
40159--40258	45	2.2	45	89	0	146	18	26	31	25	1.97

Tables:   1

The End!