Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 11 of 131
Found at i:2767961 original size:34 final size:34
Alignment explanation
Indices: 2767882--2768165 Score: 164
Period size: 34 Copynumber: 8.4 Consensus size: 34
2767872 TTTTCAAATG
** *
2767882 TGAATCTGAAAGTTTTTACGAATCTTC-ATTCATTA
1 TGAATCTGAAAG-CCTTGCGAATCTTCAATTC-TTA
* * * *
2767917 CGGATTTGAAAGCCTTGCGAATCTTTAATTCTTA
1 TGAATCTGAAAGCCTTGCGAATCTTCAATTCTTA
* * * * *
2767951 TGAATCTGAAAACTTTGTG-ATCTTTAATTCTTG
1 TGAATCTGAAAGCCTTGCGAATCTTCAATTCTTA
** ** * * *
2767984 CAAATCTGAAAGTTTTTACAAATCTTCATTTCTTA
1 TGAATCTGAAAG-CCTTGCGAATCTTCAATTCTTA
* *
2768019 TGAATCTGAAAACCTTGCGAATCTCCAATTCTTA
1 TGAATCTGAAAGCCTTGCGAATCTTCAATTCTTA
* * * * * * *
2768053 CGAATATGAATGCCTTACAAATCTCCAATTCTTG
1 TGAATCTGAAAGCCTTGCGAATCTTCAATTCTTA
* * * *
2768087 TGAATGTG-AATCTCTTGCGAATCTCCAATTCTTG
1 TGAATCTGAAAGC-CTTGCGAATCTTCAATTCTTA
* * *
2768121 TGAATCTGAAA-TCTTAC-AAGTCTTCAATTCTTG
1 TGAATCTGAAAGCCTTGCGAA-TCTTCAATTCTTA
*
2768154 CGAATCTGAAAG
1 TGAATCTGAAAG
2768166 TTTTGTGAAT
Statistics
Matches: 191, Mismatches: 51, Indels: 15
0.74 0.20 0.06
Matches are distributed among these distances:
32 2 0.01
33 50 0.26
34 104 0.54
35 35 0.18
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.38
Consensus pattern (34 bp):
TGAATCTGAAAGCCTTGCGAATCTTCAATTCTTA
Found at i:2768056 original size:17 final size:16
Alignment explanation
Indices: 2768032--2768160 Score: 71
Period size: 17 Copynumber: 7.7 Consensus size: 16
2768022 ATCTGAAAAC
2768032 CTTGCGAATCTCCAATT
1 CTTGCGAATCT-CAATT
* * * *
2768049 CTTACGAATATGAATGC
1 CTTGCGAATCTCAAT-T
* *
2768066 CTTACAAATCTCCAATT
1 CTTGCGAATCT-CAATT
* * *
2768083 CTTGTGAATGTGAATCT
1 CTTGCGAATCTCAAT-T
2768100 CTTGCGAATCTCCAATT
1 CTTGCGAATCT-CAATT
* * *
2768117 CTTGTGAATCTGAAAT
1 CTTGCGAATCTCAATT
*
2768133 CTTAC-AAGTCTTCAATT
1 CTTGCGAA-TC-TCAATT
2768150 CTTGCGAATCT
1 CTTGCGAATCT
2768161 GAAAGTTTTG
Statistics
Matches: 81, Mismatches: 24, Indels: 15
0.68 0.20 0.12
Matches are distributed among these distances:
15 2 0.02
16 15 0.19
17 56 0.69
18 8 0.10
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.36
Consensus pattern (16 bp):
CTTGCGAATCTCAATT
Found at i:2768071 original size:68 final size:68
Alignment explanation
Indices: 2767900--2768164 Score: 232
Period size: 68 Copynumber: 3.9 Consensus size: 68
2767890 AAAGTTTTTA
* * * * * *
2767900 CGAATCTTC-ATTCATTACGGATTTGAAAGCCTTGCGAATCTTTAATTCTTATGAATCTGAAAAC
1 CGAATCTCCAATTC-TTACGAATCTGAAAGCCTTACAAATCTTCAATTCTTATGAATCTGAAAAC
*
2767964 TTTG
65 CTTG
* ** * * ** *
2767968 TG-ATCTTTAATTCTTGCAAATCTGAAAGTTTTTACAAATCTTCATTTCTTATGAATCTGAAAAC
1 CGAATCTCCAATTCTTACGAATCTGAAAG-CCTTACAAATCTTCAATTCTTATGAATCTGAAAAC
2768032 CTTG
65 CTTG
* * * * * *
2768036 CGAATCTCCAATTCTTACGAATATGAATGCCTTACAAATCTCCAATTCTTGTGAATGTG-AATCT
1 CGAATCTCCAATTCTTACGAATCTGAAAGCCTTACAAATCTTCAATTCTTATGAATCTGAAAAC-
2768100 CTTG
65 CTTG
** * * **
2768104 CGAATCTCCAATTCTTGTGAATCTGAAA-TCTTACAAGTCTTCAATTCTTGCGAATCTGAAA
1 CGAATCTCCAATTCTTACGAATCTGAAAGCCTTACAAATCTTCAATTCTTATGAATCTGAAA
2768165 GTTTTGTGAA
Statistics
Matches: 156, Mismatches: 36, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
67 44 0.28
68 92 0.59
69 20 0.13
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (68 bp):
CGAATCTCCAATTCTTACGAATCTGAAAGCCTTACAAATCTTCAATTCTTATGAATCTGAAAACC
TTG
Found at i:2768239 original size:15 final size:15
Alignment explanation
Indices: 2768205--2768250 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 15
2768195 AAAATTCTTG
2768205 TGAATCTTTGAACCTTA
1 TGAATCTTTGAA--TTA
2768222 TGAATCTTTGAATTA
1 TGAATCTTTGAATTA
2768237 TGAATCTTTGAATT
1 TGAATCTTTGAATT
2768251 TCAAATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 17 0.59
17 12 0.41
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (15 bp):
TGAATCTTTGAATTA
Found at i:2768679 original size:85 final size:84
Alignment explanation
Indices: 2768378--2768701 Score: 341
Period size: 85 Copynumber: 3.8 Consensus size: 84
2768368 TGTTGTAAAG
* * * *
2768378 TCAGACTTCGGTTTCATCCAGGTCATTTTGTTTTTGGATTTCGGCCTATGCCAGAT-TCTTCTTC
1 TCAGACTTCGG-TTCATCTAAGTCATTTTG-TTTTGGATTTCGACCTATGTCAGATCT-TTCTTC
*
2768442 GACTTAGTCCAAGTTATTCATT
63 GGCTTAGTCCAAGTTATTCATT
* * ** * *
2768464 TCAGACTTCGATTCCATCTAAGTCATTTTGTTTTCGAATTTTAACCTATGTCAAATCCTTCTTC-
1 TCAGACTTCGGTT-CATCTAAGTCATTTTGTTTT-GGATTTCGACCTATGTCAGATCTTTCTTCG
*
2768528 GCTTAGTCCAAGTTATTCGTT
64 GCTTAGTCCAAGTTATTCATT
* * * *
2768549 TCAAACTTTGGTTCATTCT-AGATCATTTTGTTTTAGATTTCGACTTATGTCAGATCTTTCTTCG
1 TCAGACTTCGGTTCA-TCTAAG-TCATTTTGTTTTGGATTTCGACCTATGTCAGATCTTTCTTCG
*
2768613 GCTTAGTCCAAGTCATTCA-T
64 GCTTAGTCCAAGTTATTCATT
* * * * *
2768633 TCTAGACTTCGGTTCAGTCTAAGTCATTTTGTTTTGGATTTTGACTTATGTTAGATCTTTTTTTG
1 TC-AGACTTCGGTTCA-TCTAAGTCATTTTGTTTTGGATTTCGACCTATGTCAGATCTTTCTTCG
2768698 GCTT
64 GCTT
2768702 GCATTTCAGA
Statistics
Matches: 198, Mismatches: 32, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
84 29 0.15
85 122 0.62
86 47 0.24
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (84 bp):
TCAGACTTCGGTTCATCTAAGTCATTTTGTTTTGGATTTCGACCTATGTCAGATCTTTCTTCGGC
TTAGTCCAAGTTATTCATT
Found at i:2768833 original size:160 final size:159
Alignment explanation
Indices: 2768571--2769019 Score: 510
Period size: 160 Copynumber: 2.8 Consensus size: 159
2768561 TCATTCTAGA
* * *** * *
2768571 TCATTTTGTTTTAGATTTCGACTTATGTCAGATCTTTCTTCGGCTTAGTCCAAGTCATTCA-TTC
1 TCATTTTGTTTTAGATTTTGACATATGTCAGATCTTTCTTCAATTTATTCCAAGTTATTCACTTC
* * * * * * *
2768635 TAGACTTCGGTTCAGTCTAAGTCATTTTGTTTTGGATTTTGACTTATGTTAGATCTTTTTTTGGC
66 CAGACTTCGATTCAGTCTAGGTCATTTTATTTTGGATTTTGACTTATGTTAGATCCTTCTTTAGC
* * *** *
2768700 TTGCATTTCAGACTTGAATTTTGTTCAAG
131 TTGCATTTCAAACTTCAATTCCATCCAAG
* * * *
2768729 TCATTTTGTTTTCAGATTTTGACCTATATCAGATCTTTCTTCAATTTATTCTAAATTATTCACTT
1 TCATTTTGTTTT-AGATTTTGACATATGTCAGATCTTTCTTCAATTTATTCCAAGTTATTCACTT
* * *
2768794 CCAGACTTCGATTTAGTCTAGGTCATTTCATTTTGGATTTCGACTTATGTTAGATCCTTCTTTAG
65 CCAGACTTCGATTCAGTCTAGGTCATTTTATTTTGGATTTTGACTTATGTTAGATCCTTCTTTAG
2768859 CTTGCATTTCAAACTTCAATTCCATCCAAG
130 CTTGCATTTCAAACTTCAATTCCATCCAAG
* * *
2768889 TCATTTTGTTTTGGATTTTGACATATGTCAAATTCTTT-TTCGACTTT-TTCCAAGTTATTCACT
1 TCATTTTGTTTTAGATTTTGACATATGTCAGA-TCTTTCTTC-AATTTATTCCAAGTTATTCACT
* * * * * * *
2768952 T-CAAACTTTGCTTCAATCTAGGCCATTTTATTTTAGATTTTGGCTTATGTTAGATCCTTCTTTA
64 TCCAGACTTCGATTCAGTCTAGGTCATTTTATTTTGGATTTTGACTTATGTTAGATCCTTCTTTA
2769016 GCTT
129 GCTT
2769020 AGTCCAAGTT
Statistics
Matches: 244, Mismatches: 43, Indels: 8
0.83 0.15 0.03
Matches are distributed among these distances:
158 69 0.28
159 73 0.30
160 102 0.42
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (159 bp):
TCATTTTGTTTTAGATTTTGACATATGTCAGATCTTTCTTCAATTTATTCCAAGTTATTCACTTC
CAGACTTCGATTCAGTCTAGGTCATTTTATTTTGGATTTTGACTTATGTTAGATCCTTCTTTAGC
TTGCATTTCAAACTTCAATTCCATCCAAG
Found at i:2771716 original size:22 final size:19
Alignment explanation
Indices: 2771673--2771715 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 19
2771663 ATTTTTATTT
2771673 TATAAAAATTTAAAATATA
1 TATAAAAATTTAAAATATA
2771692 TATAAAAATTAATAAAA-ATA
1 TATAAAAATT--TAAAATATA
2771712 TATA
1 TATA
2771716 TTCGATTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.45
20 7 0.32
21 5 0.23
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TATAAAAATTTAAAATATA
Found at i:2772483 original size:59 final size:59
Alignment explanation
Indices: 2772367--2772487 Score: 143
Period size: 59 Copynumber: 2.1 Consensus size: 59
2772357 TTGTATATTG
* * * * **
2772367 TTTGAAATATTAACAATCAAGTGCCTCACATAATAGCAATATCAAGTTTTATAATCTAT
1 TTTGAAATATTAACAACCAAATGCCTCACATAACACCAATATCAAGGCTTATAATCTAT
* * * * *
2772426 TTTGGAATATTGACAACCAAATGCCTCACATAACACCAATTTCAGGGCTTATGATCTAT
1 TTTGAAATATTAACAACCAAATGCCTCACATAACACCAATATCAAGGCTTATAATCTAT
2772485 TTT
1 TTT
2772488 TCTTTCTTTG
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (59 bp):
TTTGAAATATTAACAACCAAATGCCTCACATAACACCAATATCAAGGCTTATAATCTAT
Found at i:2774436 original size:39 final size:39
Alignment explanation
Indices: 2774389--2774465 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
2774379 GGATGGGGTA
*
2774389 GGGAGGATTGGGTGTGGTGGGGCGTTGG-GGGGAAGGTG
1 GGGAGGATTGGGTGTGGTGGGACGTTGGAGGGGAAGGTG
*
2774427 GGGAGGGATTGGGTGTGGTGGGATGTTGGAGGGGAAGGT
1 GGGA-GGATTGGGTGTGGTGGGACGTTGGAGGGGAAGGT
2774466 AGAGAAGGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 4 0.11
39 22 0.63
40 9 0.26
ACGTcount: A:0.13, C:0.01, G:0.64, T:0.22
Consensus pattern (39 bp):
GGGAGGATTGGGTGTGGTGGGACGTTGGAGGGGAAGGTG
Found at i:2774476 original size:40 final size:39
Alignment explanation
Indices: 2774392--2774477 Score: 118
Period size: 39 Copynumber: 2.2 Consensus size: 39
2774382 TGGGGTAGGG
* * *
2774392 AGGATTGGGTGTGGTGGGGCGTTGGGGGGAAGGTGGGGA
1 AGGATTGGGTGTGGTGGGACGTTGGGGGGAAGGTAGAGA
* *
2774431 GGGATTGGGTGTGGTGGGATGTTGGAGGGGAAGGTAGAGA
1 AGGATTGGGTGTGGTGGGACGTTGG-GGGGAAGGTAGAGA
2774471 AGGATTG
1 AGGATTG
2774478 ATGGGGGTGG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 22 0.55
40 18 0.45
ACGTcount: A:0.17, C:0.01, G:0.59, T:0.22
Consensus pattern (39 bp):
AGGATTGGGTGTGGTGGGACGTTGGGGGGAAGGTAGAGA
Found at i:2774778 original size:20 final size:20
Alignment explanation
Indices: 2774740--2774777 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2774730 GATTGTGTTA
*
2774740 TATATTAATTTATAATTTTG
1 TATATGAATTTATAATTTTG
2774760 TATATGAATTT-TAATTTT
1 TATATGAATTTATAATTTT
2774778 TTTTGTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
TATATGAATTTATAATTTTG
Found at i:2778476 original size:6 final size:6
Alignment explanation
Indices: 2778467--2778503 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
2778457 TTTAAGTCCA
* *
2778467 GATGAT GATGGT GATGGA GATGGT GATGGT GATGGT G
1 GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT G
2778504 TGAATTTTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.22, C:0.00, G:0.49, T:0.30
Consensus pattern (6 bp):
GATGGT
Found at i:2778493 original size:18 final size:18
Alignment explanation
Indices: 2778466--2778501 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
2778456 GTTTAAGTCC
2778466 AGATGATGATGGTGATGG
1 AGATGATGATGGTGATGG
*
2778484 AGATGGTGATGGTGATGG
1 AGATGATGATGGTGATGG
2778502 TGTGAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.47, T:0.28
Consensus pattern (18 bp):
AGATGATGATGGTGATGG
Found at i:2778877 original size:21 final size:21
Alignment explanation
Indices: 2778851--2778892 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
2778841 TTATTATCCA
*
2778851 CCTCAAATGCATCCTCCACCT
1 CCTCAAATACATCCTCCACCT
*
2778872 CCTCAAATATATCCTCCACCT
1 CCTCAAATACATCCTCCACCT
2778893 TAAATGTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.45, G:0.02, T:0.26
Consensus pattern (21 bp):
CCTCAAATACATCCTCCACCT
Found at i:2778902 original size:18 final size:18
Alignment explanation
Indices: 2778847--2778902 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 18
2778837 ATAGTTATTA
* *
2778847 TCCACCTCAAATGCATCC
1 TCCACCTTAAATGTATCC
*
2778865 TCCACCTCCTCAAATATATCC
1 TCCACCT--T-AAATGTATCC
2778886 TCCACCTTAAATGTATC
1 TCCACCTTAAATGTATC
2778903 AGTTACCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
18 15 0.48
19 1 0.03
21 15 0.48
ACGTcount: A:0.29, C:0.39, G:0.04, T:0.29
Consensus pattern (18 bp):
TCCACCTTAAATGTATCC
Found at i:2778957 original size:33 final size:33
Alignment explanation
Indices: 2778871--2778972 Score: 125
Period size: 33 Copynumber: 3.0 Consensus size: 33
2778861 ATCCTCCACC
*
2778871 TCCTCAAATATATCCTCCACCTTAAATGTATCAG
1 TCCTCAAATATATCTTCCACC-TAAATGTATCAG
* *
2778905 TTACCACAAATATACCTTCCACCATAAATGTATCA-
1 -T-CCTCAAATATATCTTCCACC-TAAATGTATCAG
2778940 TCCTCAAATATATCTTCCACCTCAAATGTATCA
1 TCCTCAAATATATCTTCCACCT-AAATGTATCA
2778973 AGAACAAAGG
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
32 1 0.02
33 28 0.47
34 1 0.02
35 1 0.02
36 28 0.47
ACGTcount: A:0.35, C:0.29, G:0.04, T:0.31
Consensus pattern (33 bp):
TCCTCAAATATATCTTCCACCTAAATGTATCAG
Found at i:2778964 original size:18 final size:18
Alignment explanation
Indices: 2778872--2778971 Score: 59
Period size: 18 Copynumber: 5.7 Consensus size: 18
2778862 TCCTCCACCT
*
2778872 CCTCAAATATATCCTCCA
1 CCTCAAATATATCTTCCA
* *
2778890 CCTTAAATGTATCAGTT--A
1 CCTCAAATATATC--TTCCA
* *
2778908 CCACAAATATACCTTCCA
1 CCTCAAATATATCTTCCA
* *
2778926 CCAT-AAATGTATCAT---
1 CC-TCAAATATATCTTCCA
2778941 CCTCAAATATATCTTCCA
1 CCTCAAATATATCTTCCA
*
2778959 CCTCAAATGTATC
1 CCTCAAATATATC
2778972 AAGAACAAAG
Statistics
Matches: 59, Mismatches: 14, Indels: 18
0.65 0.15 0.20
Matches are distributed among these distances:
14 1 0.02
15 11 0.19
16 2 0.03
18 44 0.75
20 1 0.02
ACGTcount: A:0.35, C:0.30, G:0.04, T:0.31
Consensus pattern (18 bp):
CCTCAAATATATCTTCCA
Found at i:2796319 original size:2 final size:2
Alignment explanation
Indices: 2796312--2796337 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2796302 AAGTGAGGAA
2796312 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
2796338 GGTCTCTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2798701 original size:15 final size:14
Alignment explanation
Indices: 2798678--2798714 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
2798668 TTTAATTTGT
2798678 ATAATTTTATCATA
1 ATAATTTTATCATA
*
2798692 ATAATCTTTATCATT
1 ATAAT-TTTATCATA
2798707 ATAATTTT
1 ATAATTTT
2798715 TTTTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (14 bp):
ATAATTTTATCATA
Found at i:2800947 original size:24 final size:24
Alignment explanation
Indices: 2800920--2800968 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
2800910 AATAATAATT
* *
2800920 ATTATTATAGTTATAATTTAAAAA
1 ATTATTATAATTATAATTGAAAAA
*
2800944 ATTATTATAATTGTAATTGAAAAA
1 ATTATTATAATTATAATTGAAAAA
2800968 A
1 A
2800969 ATTAAATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (24 bp):
ATTATTATAATTATAATTGAAAAA
Found at i:2801034 original size:20 final size:21
Alignment explanation
Indices: 2801009--2801047 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
2800999 TTATTGAAAT
2801009 TGATATT-TAAATTTAATTTA
1 TGATATTATAAATTTAATTTA
2801029 TGATATTATAAATTTAATT
1 TGATATTATAAATTTAATT
2801048 GCATCGTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
TGATATTATAAATTTAATTTA
Found at i:2815165 original size:12 final size:13
Alignment explanation
Indices: 2815141--2815170 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
2815131 TACATGATGC
2815141 ATATATGACATAT
1 ATATATGACATAT
2815154 ATATAT-ACATAT
1 ATATATGACATAT
2815166 ATATA
1 ATATA
2815171 AGCCAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (13 bp):
ATATATGACATAT
Found at i:2817593 original size:13 final size:13
Alignment explanation
Indices: 2817577--2817606 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2817567 TGTTTATATT
2817577 ATTTTCATATAAA
1 ATTTTCATATAAA
*
2817590 ATTTTGATATAAA
1 ATTTTCATATAAA
2817603 ATTT
1 ATTT
2817607 GTTATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50
Consensus pattern (13 bp):
ATTTTCATATAAA
Found at i:2817652 original size:17 final size:16
Alignment explanation
Indices: 2817630--2817661 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
2817620 TATAAAAAAT
2817630 AAAATATATATAAATTA
1 AAAATATATA-AAATTA
2817647 AAAATATATAAAATT
1 AAAATATATAAAATT
2817662 TATTTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAATATATAAAATTA
Found at i:2817653 original size:15 final size:16
Alignment explanation
Indices: 2817629--2817658 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
2817619 TTATAAAAAA
2817629 TAAAATATATATAAAT
1 TAAAATATATATAAAT
2817645 TAAAA-ATATATAAA
1 TAAAATATATATAAA
2817659 ATTTATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
TAAAATATATATAAAT
Found at i:2821957 original size:23 final size:23
Alignment explanation
Indices: 2821931--2821978 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
2821921 TATAAATTAA
* *
2821931 AAATTAAGAA-TTGATTTTAGTAT
1 AAATTAA-AATTTCATTTTAATAT
2821954 AAATTAAAATTTCATTTTAATAT
1 AAATTAAAATTTCATTTTAATAT
2821977 AA
1 AA
2821979 TAAAAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (23 bp):
AAATTAAAATTTCATTTTAATAT
Found at i:2832698 original size:2 final size:2
Alignment explanation
Indices: 2832691--2832717 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2832681 GTTTATCTAT
2832691 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
2832718 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:2834669 original size:2 final size:2
Alignment explanation
Indices: 2834662--2834686 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2834652 AAGAAGTAAT
2834662 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
2834687 GAATCAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2836122 original size:19 final size:18
Alignment explanation
Indices: 2836087--2836123 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
2836077 AACCCTATTT
*
2836087 TTTTTTATTTTTTTAAAA
1 TTTTTTATTTTTATAAAA
2836105 TTTTTTATTTTTAATAAAA
1 TTTTTTATTTTT-ATAAAA
2836124 ATTGATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTTATTTTTATAAAA
Found at i:2838734 original size:16 final size:17
Alignment explanation
Indices: 2838713--2838751 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
2838703 CTCATTCTTT
2838713 TTTTTTTTAATT-AAAA
1 TTTTTTTTAATTGAAAA
*
2838729 TTTTTTTTATTTGAAAA
1 TTTTTTTTAATTGAAAA
2838746 TTTTTT
1 TTTTTT
2838752 ATGTTTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (17 bp):
TTTTTTTTAATTGAAAA
Found at i:2839343 original size:2 final size:2
Alignment explanation
Indices: 2839338--2839370 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
2839328 ATGAAATTAT
2839338 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
2839371 GAGGGAAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:2856090 original size:14 final size:14
Alignment explanation
Indices: 2856073--2856106 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
2856063 ATAACTTGAC
2856073 TAAAATAATTTTAA
1 TAAAATAATTTTAA
*
2856087 TAAAGTAATTTTAA
1 TAAAATAATTTTAA
2856101 TAAAAT
1 TAAAAT
2856107 TAATAAAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (14 bp):
TAAAATAATTTTAA
Found at i:2856189 original size:18 final size:17
Alignment explanation
Indices: 2856166--2856210 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
2856156 TAAAGTATAC
2856166 TTGACATAAAGAATAAAG
1 TTGACATAAA-AATAAAG
*
2856184 TTGACA-AAACATAAAG
1 TTGACATAAAAATAAAG
2856200 TTGACATAAAA
1 TTGACATAAAA
2856211 TTGATGTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 12 0.50
17 6 0.25
18 6 0.25
ACGTcount: A:0.56, C:0.09, G:0.13, T:0.22
Consensus pattern (17 bp):
TTGACATAAAAATAAAG
Found at i:2862731 original size:26 final size:26
Alignment explanation
Indices: 2862702--2862751 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
2862692 TTTTTATTAA
2862702 ATTTTTTCTTCAATCACAATTATAGT
1 ATTTTTTCTTCAATCACAATTATAGT
* *
2862728 ATTTTTTTTTCAATCATAATTATA
1 ATTTTTTCTTCAATCACAATTATA
2862752 ATAATTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.12, G:0.02, T:0.54
Consensus pattern (26 bp):
ATTTTTTCTTCAATCACAATTATAGT
Found at i:2864097 original size:24 final size:24
Alignment explanation
Indices: 2864058--2864106 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
2864048 GATAAGATAC
2864058 ATACAATTGATCAAAATTTTACTA
1 ATACAATTGATCAAAATTTTACTA
* *
2864082 ATACAATTTATTAAAATTTTACTA
1 ATACAATTGATCAAAATTTTACTA
2864106 A
1 A
2864107 CTTTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.41
Consensus pattern (24 bp):
ATACAATTGATCAAAATTTTACTA
Found at i:2865103 original size:21 final size:21
Alignment explanation
Indices: 2865065--2865104 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
2865055 TATTAAAAAA
* * *
2865065 TTAATTTTATATTTTATATTT
1 TTAATTTTAAAATATATATTT
2865086 TTAATTTTAAAATATATAT
1 TTAATTTTAAAATATATAT
2865105 CTCTAAATTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTAATTTTAAAATATATATTT
Found at i:2870207 original size:223 final size:219
Alignment explanation
Indices: 2869769--2870216 Score: 824
Period size: 222 Copynumber: 2.0 Consensus size: 219
2869759 TGGGAATGAG
*
2869769 AATGATAGACTGATGGTGGAAAAGATGATTCATAGATAATAACTAATAATTCATGGAAGCAATTT
1 AATGCTAGACTGATGGTGGAAAAGATGATTCATAGATAATAACTAATAATTCATGGAAGCAATTT
2869834 GATTGAAACCAAAAAAAAAAAAAGGGAAAAAAAATACTAGATCAATATTTTCATAGATGCGACTG
66 GATTGAAACCAAAAAAAAAAAAAGGGAAAAAAAATACTAGATCAATATTTTCATAGATGCGACTG
2869899 TTTTTCCACATATCAGTCTGTTTTTCTTGATTATATCAGATAACTTTCAGTTTAGAAATGTCCCT
131 TTTTTCCACATATCAGTCTGTTTTTCTTGATTATATCAGATAACTTTCAGTTTAGAAATGTCCCT
2869964 TGCTAAGATAGGATGTCTTTTAGA
196 TGCTAAGATAGGATGTCTTTTAGA
*
2869988 AATGCTAGACTGATGGTGGAAAAGATGATTCATAGATAATAACTAATAATTCATGGAAGCATTTT
1 AATGCTAGACTGATGGTGGAAAAGATGATTCATAGATAATAACTAATAATTCATGGAAGCAATTT
*
2870053 GATTGAAACCAAAAAACAAAAAAAAAGGGAAAAAAAATACTAGATCAATATTTTCATAGGTGCGA
66 GATTGAAACC--AAAA-AAAAAAAAAGGGAAAAAAAATACTAGATCAATATTTTCATAGATGCGA
2870118 CTGTTTTTCCACATATCAGTCTGTTTTTCATTGATTATATCAGATAACTTTCAGTTTAGAAATGT
128 CTGTTTTTCCACATATCAGTCTGTTTTTC-TTGATTATATCAGATAACTTTCAGTTTAGAAATGT
*
2870183 CCCTTGCTAAGATAGGATGTCTTTTTGA
192 CCCTTGCTAAGATAGGATGTCTTTTAGA
2870211 AATGCT
1 AATGCT
2870217 TCTCATCTTC
Statistics
Matches: 221, Mismatches: 4, Indels: 4
0.97 0.02 0.02
Matches are distributed among these distances:
219 73 0.33
221 4 0.02
222 76 0.34
223 68 0.31
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.33
Consensus pattern (219 bp):
AATGCTAGACTGATGGTGGAAAAGATGATTCATAGATAATAACTAATAATTCATGGAAGCAATTT
GATTGAAACCAAAAAAAAAAAAAGGGAAAAAAAATACTAGATCAATATTTTCATAGATGCGACTG
TTTTTCCACATATCAGTCTGTTTTTCTTGATTATATCAGATAACTTTCAGTTTAGAAATGTCCCT
TGCTAAGATAGGATGTCTTTTAGA
Found at i:2875271 original size:14 final size:15
Alignment explanation
Indices: 2875252--2875285 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
2875242 TTTTCATTCT
2875252 GAAAAAAAA-AAAAA
1 GAAAAAAAAGAAAAA
2875266 GAAAAAAAAGAAAAA
1 GAAAAAAAAGAAAAA
2875281 GAAAA
1 GAAAA
2875286 GTGCAAGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (15 bp):
GAAAAAAAAGAAAAA
Found at i:2876125 original size:15 final size:15
Alignment explanation
Indices: 2876107--2876164 Score: 50
Period size: 15 Copynumber: 4.0 Consensus size: 15
2876097 ATAAAATAAA
2876107 ATAATATTATTTAAT
1 ATAATATTATTTAAT
*
2876122 ATAATTTTA-TT-A-
1 ATAATATTATTTAAT
*
2876134 ATAATATTATTTTAT
1 ATAATATTATTTAAT
* *
2876149 CTTATATTATTATAAT
1 ATAATATTATT-TAAT
2876165 TTTTTATACC
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
12 8 0.24
13 3 0.09
14 3 0.09
15 17 0.50
16 3 0.09
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (15 bp):
ATAATATTATTTAAT
Found at i:2876132 original size:18 final size:18
Alignment explanation
Indices: 2876111--2876171 Score: 54
Period size: 17 Copynumber: 3.3 Consensus size: 18
2876101 AATAAAATAA
2876111 TATTATTTAATATAATTT
1 TATTATTTAATATAATTT
* *
2876129 TATTA-ATAATATTATTT
1 TATTATTTAATATAATTT
*
2876146 TATCTTATATTATTATAATTT
1 TA--TTAT-TTAATATAATTT
2876167 T-TTAT
1 TATTAT
2876172 ACCAAATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
17 12 0.35
18 9 0.26
19 3 0.09
21 10 0.29
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTATTTAATATAATTT
Found at i:2876158 original size:27 final size:27
Alignment explanation
Indices: 2876106--2876164 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
2876096 TATAAAATAA
*
2876106 AATAATATTATTTAATATAATTTTATT
1 AATAATATTATTTAATATAATATTATT
* * *
2876133 AATAATATTATTTTATCTTATATTATT
1 AATAATATTATTTAATATAATATTATT
2876160 -ATAAT
1 AATAAT
2876165 TTTTTATACC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (27 bp):
AATAATATTATTTAATATAATATTATT
Found at i:2877487 original size:2 final size:2
Alignment explanation
Indices: 2877480--2877509 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2877470 TTGTATCTAG
2877480 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2877510 AAATACCTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2882437 original size:24 final size:24
Alignment explanation
Indices: 2882405--2882455 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
2882395 AAAAACAAGT
* *
2882405 ATTCTTATTGCATAAAACAAAGGCC
1 ATTCTTATTGAAGAAAA-AAAGGCC
*
2882430 ATTC-TATTGAAGAAAATAAGGCC
1 ATTCTTATTGAAGAAAAAAAGGCC
2882453 ATT
1 ATT
2882456 TGTTAGTACC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 9 0.39
24 10 0.43
25 4 0.17
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (24 bp):
ATTCTTATTGAAGAAAAAAAGGCC
Found at i:2884180 original size:138 final size:138
Alignment explanation
Indices: 2883927--2884202 Score: 516
Period size: 138 Copynumber: 2.0 Consensus size: 138
2883917 TCAATGAAAG
* *
2883927 ATTCACTAAGATTATTCATCATTAAATCAGTTTTCATTCTAGAGCTAAAATGAGATCTTGTCTAA
1 ATTCACTAAGATTATTCATCATTAAATCAGTCTTCATTCTAGAGCTAAAATGAGATCTTGTCCAA
2883992 GTTTTTGGATTTAATCTACTTACCCAAGTATGTGCTGCCCCTATTCTGTCAAGCTCTTTTAGCAC
66 GTTTTTGGATTTAATCTACTTACCCAAGTATGTGCTGCCCCTATTCTGTCAAGCTCTTTTAGCAC
2884057 CAACATTA
131 CAACATTA
2884065 ATTCACTAAGATTATTCATCATTAAATCAGTCTTCATTCTAGAGCTAAAATGAGATCTTGTCCAA
1 ATTCACTAAGATTATTCATCATTAAATCAGTCTTCATTCTAGAGCTAAAATGAGATCTTGTCCAA
* *
2884130 GTTTTTGGATTTAATCTACTTACCTAAGTATGTGCTGCCCCTATTTTGTCAAGCTCTTTTAGCAC
66 GTTTTTGGATTTAATCTACTTACCCAAGTATGTGCTGCCCCTATTCTGTCAAGCTCTTTTAGCAC
2884195 CAACATTA
131 CAACATTA
2884203 CTTTTTTTCA
Statistics
Matches: 134, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
138 134 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.38
Consensus pattern (138 bp):
ATTCACTAAGATTATTCATCATTAAATCAGTCTTCATTCTAGAGCTAAAATGAGATCTTGTCCAA
GTTTTTGGATTTAATCTACTTACCCAAGTATGTGCTGCCCCTATTCTGTCAAGCTCTTTTAGCAC
CAACATTA
Found at i:2885704 original size:36 final size:36
Alignment explanation
Indices: 2885654--2885740 Score: 84
Period size: 36 Copynumber: 2.4 Consensus size: 36
2885644 TACAAGTACC
* * * *
2885654 ATTATCAATCTCATTAGCACCAATGTTTTTTGCCAA
1 ATTAGCAATATCATTAGCACCAATGCTTTCTGCCAA
* * ** * *
2885690 ATTAGTAGTATCATTTTCACCATTGCTTTCTGCTAA
1 ATTAGCAATATCATTAGCACCAATGCTTTCTGCCAA
2885726 ATTAGCAATATCATT
1 ATTAGCAATATCATT
2885741 TCCACTATTG
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (36 bp):
ATTAGCAATATCATTAGCACCAATGCTTTCTGCCAA
Found at i:2887335 original size:21 final size:20
Alignment explanation
Indices: 2887298--2887341 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
2887288 ATTTTAGGTG
*
2887298 ATTTATTATTTTTAAACACT
1 ATTTATTATTTTTAAACAAT
*
2887318 ATTTTTTATTTTTAAAACAAT
1 ATTTATTATTTTT-AAACAAT
2887339 ATT
1 ATT
2887342 ATAAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTATTATTTTTAAACAAT
Found at i:2890052 original size:16 final size:18
Alignment explanation
Indices: 2890024--2890057 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
2890014 TAATTAGAAT
2890024 ATATAATTATTTT-TAAA
1 ATATAATTATTTTATAAA
2890041 ATATAA-TATTTTATAAA
1 ATATAATTATTTTATAAA
2890058 TTTAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATATAATTATTTTATAAA
Found at i:2890058 original size:16 final size:16
Alignment explanation
Indices: 2890024--2890098 Score: 50
Period size: 16 Copynumber: 4.8 Consensus size: 16
2890014 TAATTAGAAT
2890024 ATATAATTATTTT-TAAA
1 ATATAA-TATTTTAT-AA
2890041 ATATAATATTTTATAA
1 ATATAATATTTTATAA
* *
2890057 ATTTAA-AATTTAT-A
1 ATATAATATTTTATAA
* * *
2890071 TTTTAATA-CTTATAA
1 ATATAATATTTTATAA
2890086 ATTATAATATTTT
1 A-TATAATATTTT
2890099 TTTTTTAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
14 10 0.22
15 8 0.17
16 19 0.41
17 9 0.20
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATAATATTTTATAA
Found at i:2890061 original size:23 final size:23
Alignment explanation
Indices: 2890035--2890098 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
2890025 TATAATTATT
2890035 TTTAAAATATAATATTTT-ATAAA
1 TTTAAAATATAATATTTTAAT-AA
* *
2890058 TTTAAAAT-TTATATTTTAATAC
1 TTTAAAATATAATATTTTAATAA
*
2890080 TTATAAATTATAATATTTT
1 TT-TAAAATATAATATTTT
2890099 TTTTTTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
22 11 0.32
23 15 0.44
24 8 0.24
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTAAAATATAATATTTTAATAA
Found at i:2891256 original size:16 final size:16
Alignment explanation
Indices: 2891235--2891265 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2891225 ATAATAATTT
2891235 ATTAAATTTATTATTC
1 ATTAAATTTATTATTC
*
2891251 ATTAAATTTTTTATT
1 ATTAAATTTATTATT
2891266 TGTTTATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTAAATTTATTATTC
Found at i:2894093 original size:21 final size:21
Alignment explanation
Indices: 2894047--2894093 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
2894037 TTTAAAAGAA
*
2894047 TTAA-TATCATAAATAAATTT
1 TTAATTATAATAAATAAATTT
*
2894067 TAAATTATAATAAA-AAATATT
1 TTAATTATAATAAATAAAT-TT
2894088 TTAATT
1 TTAATT
2894094 TTTAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
TTAATTATAATAAATAAATTT
Found at i:2896506 original size:17 final size:17
Alignment explanation
Indices: 2896469--2896507 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
2896459 AATAAGAAAT
*
2896469 TATTAAAATATTCATAT
1 TATTAAAATATTCATAC
2896486 TATTAAAATAATT-ATAC
1 TATTAAAAT-ATTCATAC
2896503 TATTA
1 TATTA
2896508 TATTAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
TATTAAAATATTCATAC
Found at i:2896600 original size:36 final size:40
Alignment explanation
Indices: 2896516--2896637 Score: 112
Period size: 40 Copynumber: 3.1 Consensus size: 40
2896506 TATATTAAAC
* * * *
2896516 AATATTAATTATTAAAATAAT-AAAATATCATTTACTATACA-
1 AATATTTATTATTGAAATATTAAAAATATC-TATA-TATA-AT
* *
2896557 AATATTTATTATT-TATTATT-AAAATAT-TA-ATATAAT
1 AATATTTATTATTGAAATATTAAAAATATCTATATATAAT
*
2896593 AATATTTATTATTGAAATATTAAAAATATCTATATTTAAT
1 AATATTTATTATTGAAATATTAAAAATATCTATATATAAT
2896633 AATAT
1 AATAT
2896638 ACAAATACAC
Statistics
Matches: 68, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
35 1 0.01
36 17 0.25
37 6 0.09
38 8 0.12
39 2 0.03
40 22 0.32
41 12 0.18
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (40 bp):
AATATTTATTATTGAAATATTAAAAATATCTATATATAAT
Found at i:2896613 original size:15 final size:15
Alignment explanation
Indices: 2896566--2896613 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
2896556 AAATATTTAT
2896566 TATTTATTATTAAAA
1 TATTTATTATTAAAA
*
2896581 TA-TTAATA-TAATAA
1 TATTTATTATTAA-AA
*
2896595 TATTTATTATTGAAA
1 TATTTATTATTAAAA
2896610 TATT
1 TATT
2896614 AAAAATATCT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
13 3 0.11
14 9 0.33
15 13 0.48
16 2 0.07
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
TATTTATTATTAAAA
Found at i:2896918 original size:22 final size:22
Alignment explanation
Indices: 2896893--2896936 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
2896883 AAATGGCATC
*
2896893 ATTTTTCATTGATCAATAAATT
1 ATTTTCCATTGATCAATAAATT
**
2896915 ATTTTCCATTGATTGATAAATT
1 ATTTTCCATTGATCAATAAATT
2896937 TTCTACCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (22 bp):
ATTTTCCATTGATCAATAAATT
Found at i:2903265 original size:18 final size:19
Alignment explanation
Indices: 2903229--2903267 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
2903219 AACAACGACC
2903229 GAACATGATTTCTTTTTTT
1 GAACATGATTTCTTTTTTT
2903248 GAACATGATTTCTTTTTTT
1 GAACATGATTTCTTTTTTT
2903267 G
1 G
2903268 TTCTTTCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.10, G:0.13, T:0.56
Consensus pattern (19 bp):
GAACATGATTTCTTTTTTT
Found at i:2904067 original size:7 final size:8
Alignment explanation
Indices: 2904051--2904077 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
2904041 GGTAGAAGCC
2904051 TTTTCTTT
1 TTTTCTTT
2904059 TTTTCTTT
1 TTTTCTTT
2904067 TTTTCTTT
1 TTTTCTTT
2904075 TTT
1 TTT
2904078 AGCATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTCTTT
Found at i:2909279 original size:234 final size:234
Alignment explanation
Indices: 2909011--2909479 Score: 938
Period size: 234 Copynumber: 2.0 Consensus size: 234
2909001 TTTTAAAGTA
2909011 TAATTTAATTTAAATTATTTATTATTCAATTACTCAAAAAATTTAATCAATCCTATCAAATTTAA
1 TAATTTAATTTAAATTATTTATTATTCAATTACTCAAAAAATTTAATCAATCCTATCAAATTTAA
2909076 TTTAATTTATTAATTTTTAAAATTTATAAATTTGATTCAATTAACGAATATAAAATAATATAATT
66 TTTAATTTATTAATTTTTAAAATTTATAAATTTGATTCAATTAACGAATATAAAATAATATAATT
2909141 CGATTAATTTAATTTTAAATAATTCATTTCGAAATTAACCGAATCAATCGAATAAACACCTTTAA
131 CGATTAATTTAATTTTAAATAATTCATTTCGAAATTAACCGAATCAATCGAATAAACACCTTTAA
2909206 TCTTATACACCAAAATTTGTAGATTTACAAAGATAACCT
196 TCTTATACACCAAAATTTGTAGATTTACAAAGATAACCT
2909245 TAATTTAATTTAAATTATTTATTATTCAATTACTCAAAAAATTTAATCAATCCTATCAAATTTAA
1 TAATTTAATTTAAATTATTTATTATTCAATTACTCAAAAAATTTAATCAATCCTATCAAATTTAA
2909310 TTTAATTTATTAATTTTTAAAATTTATAAATTTGATTCAATTAACGAATATAAAATAATATAATT
66 TTTAATTTATTAATTTTTAAAATTTATAAATTTGATTCAATTAACGAATATAAAATAATATAATT
2909375 CGATTAATTTAATTTTAAATAATTCATTTCGAAATTAACCGAATCAATCGAATAAACACCTTTAA
131 CGATTAATTTAATTTTAAATAATTCATTTCGAAATTAACCGAATCAATCGAATAAACACCTTTAA
2909440 TCTTATACACCAAAATTTGTAGATTTACAAAGATAACCT
196 TCTTATACACCAAAATTTGTAGATTTACAAAGATAACCT
2909479 T
1 T
2909480 GGTTACATTT
Statistics
Matches: 235, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
234 235 1.00
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.41
Consensus pattern (234 bp):
TAATTTAATTTAAATTATTTATTATTCAATTACTCAAAAAATTTAATCAATCCTATCAAATTTAA
TTTAATTTATTAATTTTTAAAATTTATAAATTTGATTCAATTAACGAATATAAAATAATATAATT
CGATTAATTTAATTTTAAATAATTCATTTCGAAATTAACCGAATCAATCGAATAAACACCTTTAA
TCTTATACACCAAAATTTGTAGATTTACAAAGATAACCT
Found at i:2917318 original size:31 final size:31
Alignment explanation
Indices: 2917253--2917396 Score: 113
Period size: 31 Copynumber: 4.7 Consensus size: 31
2917243 TATAAAATAT
* *
2917253 TAAAAATT-TTATATTT-ATATTATTTTTATA
1 TAAAAATTAATATATTTAAT-TTATATTTATA
*
2917283 TAAAAATT-ATATATTATAATTTATATTGATA
1 TAAAAATTAATATATT-TAATTTATATTTATA
* * *
2917314 TAAAAATATAAAATATTTTATTT-TATTTAAA
1 TAAAAAT-TAATATATTTAATTTATATTTATA
* *
2917345 T-ATAATTAATATATTATAATTTATATTAATA
1 TAAAAATTAATATATT-TAATTTATATTTATA
*
2917376 TAAAATTTTAAT-T-TTTAATTT
1 TAAAA-ATTAATATATTTAATTT
2917397 TTAATTTTAT
Statistics
Matches: 92, Mismatches: 14, Indels: 16
0.75 0.11 0.13
Matches are distributed among these distances:
29 8 0.09
30 29 0.32
31 33 0.36
32 11 0.12
33 11 0.12
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (31 bp):
TAAAAATTAATATATTTAATTTATATTTATA
Found at i:2917318 original size:69 final size:61
Alignment explanation
Indices: 2917227--2917386 Score: 155
Period size: 62 Copynumber: 2.5 Consensus size: 61
2917217 ATATGATTAT
*
2917227 TTATAAATTTGTATTATATAAAATATTAAAA-ATTTTATATTTATATTATTTTTATATAAAAATT
1 TTAT-AATTTATATTATATAAAATATTAAAATATTTTAT-TTTAT-TTA-----A-AT-AAAATT
2917291 -ATATA
56 AATATA
*
2917296 TTATAATTTATATTGATATAAAA-ATATAAAATATTTTATTTTATTTAAATATAATTAATATA
1 TTATAATTTATATT-ATATAAAATAT-TAAAATATTTTATTTTATTTAAATAAAATTAATATA
*
2917358 TTATAATTTATATTAATATAAAATTTTAA
1 TTATAATTTATATT-ATATAAAATATTAA
2917387 TTTTTAATTT
Statistics
Matches: 82, Mismatches: 4, Indels: 17
0.80 0.04 0.17
Matches are distributed among these distances:
61 5 0.06
62 32 0.39
63 2 0.02
68 14 0.17
69 22 0.27
70 7 0.09
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (61 bp):
TTATAATTTATATTATATAAAATATTAAAATATTTTATTTTATTTAAATAAAATTAATATA
Found at i:2919911 original size:20 final size:22
Alignment explanation
Indices: 2919872--2919911 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
2919862 CCTCTAATAT
*
2919872 TATTATAATTATATTTTTATCA
1 TATTATAATTATATTATTATCA
2919894 TATTA-AATT-TATTATTAT
1 TATTATAATTATATTATTAT
2919912 TTTAAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 4 0.24
22 5 0.29
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (22 bp):
TATTATAATTATATTATTATCA
Found at i:2919930 original size:25 final size:23
Alignment explanation
Indices: 2919872--2919931 Score: 61
Period size: 25 Copynumber: 2.6 Consensus size: 23
2919862 CCTCTAATAT
**
2919872 TATTATAATTA-TATTTTTATCA
1 TATTATAATTATTATTTTTAAAA
2919894 TATTA-AATTTATTATTATTTTAAAA
1 TATTATAA-TTATTA-T-TTTTAAAA
2919919 TATTATAATTATT
1 TATTATAATTATT
2919932 TAATTTCACA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
21 2 0.06
22 8 0.26
23 2 0.06
24 1 0.03
25 16 0.52
26 2 0.06
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (23 bp):
TATTATAATTATTATTTTTAAAA
Found at i:2925988 original size:39 final size:39
Alignment explanation
Indices: 2925938--2926018 Score: 117
Period size: 39 Copynumber: 2.1 Consensus size: 39
2925928 GTAACTCAAG
*
2925938 AACTAACTTGCATGTAATAATGCTGAAAATTCAAGAAAA
1 AACTAACTTGCATGTAATAATGCTAAAAATTCAAGAAAA
* * * *
2925977 AACTAATTTGCATGTAATAATTCTAAAAATTTAGGAAAA
1 AACTAACTTGCATGTAATAATGCTAAAAATTCAAGAAAA
2926016 AAC
1 AAC
2926019 CAAGTTTCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.28
Consensus pattern (39 bp):
AACTAACTTGCATGTAATAATGCTAAAAATTCAAGAAAA
Found at i:2926254 original size:79 final size:80
Alignment explanation
Indices: 2926102--2926255 Score: 177
Period size: 79 Copynumber: 1.9 Consensus size: 80
2926092 GATGATAGTT
* **
2926102 AATTTAAACATAAAAGCTGGTTTAAGATTTCATGATGGTTAACTAAAAGTAAAAGCTGGTTCGTT
1 AATTTAAACATAAAAGCTGGTTTAAGATTTCATGATGGTTAACCAAAAGTAAAAGCTGGTTCGCC
* *
2926167 TATTAGGTTATGGTA
66 GATGAGGTTATGGTA
* * * * ** *
2926182 AATTTAAACAT-AAAGCTGGTTTAATATTTCATGATTGTTAACCCAATGTAGTAGCTGGTTTGCC
1 AATTTAAACATAAAAGCTGGTTTAAGATTTCATGATGGTTAACCAAAAGTAAAAGCTGGTTCG-C
2926246 CGA-GAGGTTA
65 CGATGAGGTTA
2926256 AGGGGGAAGA
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
79 49 0.80
80 12 0.20
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (80 bp):
AATTTAAACATAAAAGCTGGTTTAAGATTTCATGATGGTTAACCAAAAGTAAAAGCTGGTTCGCC
GATGAGGTTATGGTA
Found at i:2927490 original size:15 final size:15
Alignment explanation
Indices: 2927451--2927488 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
2927441 ATTACTATAA
*
2927451 TTATAATAAA-AAAT
1 TTATATTAAATAAAT
2927465 TTATATTAAATAAAT
1 TTATATTAAATAAAT
2927480 TT-TATTAAA
1 TTATATTAAA
2927489 ATCAATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTATATTAAATAAAT
Found at i:2933668 original size:17 final size:18
Alignment explanation
Indices: 2933648--2933686 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
2933638 AAATATTTAT
2933648 TAAATATAA-ATAAAAAA
1 TAAATATAATATAAAAAA
*
2933665 TAAATATAATATAAAAAT
1 TAAATATAATATAAAAAA
2933683 TAAA
1 TAAA
2933687 AAAAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAATATAATATAAAAAA
Found at i:2934126 original size:14 final size:14
Alignment explanation
Indices: 2934064--2934130 Score: 53
Period size: 14 Copynumber: 4.3 Consensus size: 14
2934054 TTTATTTTTT
*
2934064 ATAATTTTTTAAAA
1 ATAAATTTTTAAAA
*
2934078 ATAAATTTCTAAAAAA
1 ATAAATTT-T-TAAAA
2934094 TTATAAATATTTTTCAAAA
1 --AT-AA-ATTTTT-AAAA
2934113 ATAAATTTTTAAAA
1 ATAAATTTTTAAAA
2934127 ATAA
1 ATAA
2934131 TAAAAATTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
14 15 0.35
15 7 0.16
16 6 0.14
17 2 0.05
18 2 0.05
19 7 0.16
20 4 0.09
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAAATTTTTAAAA
Found at i:2934127 original size:34 final size:35
Alignment explanation
Indices: 2934066--2934139 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 35
2934056 TATTTTTTAT
* *
2934066 AATTTTTTAAAAATAAATTTCTAAAAAATTATAAA
1 AATTTTTCAAAAATAAATTTCTAAAAAATAATAAA
* *
2934101 TATTTTTCAAAAATAAATTT-TTAAAAATAATAAA
1 AATTTTTCAAAAATAAATTTCTAAAAAATAATAAA
2934135 AATTT
1 AATTT
2934140 ATTTAAAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.47
35 18 0.53
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (35 bp):
AATTTTTCAAAAATAAATTTCTAAAAAATAATAAA
Found at i:2934148 original size:34 final size:34
Alignment explanation
Indices: 2934066--2934149 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 34
2934056 TATTTTTTAT
*
2934066 AATTTTTTAAAAATAAATTTCTAAAAAATTATAAA
1 AATTTTTT-AAAATAAATTTCTAAAAAATAATAAA
* * *
2934101 TATTTTTCAAAAATAAATTT-TTAAAAATAATAAA
1 AATTTTT-TAAAATAAATTTCTAAAAAATAATAAA
2934135 AATTTATTTAAAATA
1 AATTT-TTTAAAATA
2934150 TTTTAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
34 22 0.54
35 19 0.46
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (34 bp):
AATTTTTTAAAATAAATTTCTAAAAAATAATAAA
Found at i:2934226 original size:33 final size:33
Alignment explanation
Indices: 2934172--2934304 Score: 164
Period size: 34 Copynumber: 4.0 Consensus size: 33
2934162 TTATTATCTG
*
2934172 ATTTTTTAAAAATTTATTTTTTAAAAAAATTATA
1 ATTTTTT-AAAATTTATTTTTTAAAAAATTTATA
* *
2934206 ATATTTTAAAATTT-TATTTTTAAAAAGTTATATA
1 ATTTTTTAAAATTTAT-TTTTTAAAAAATT-TATA
*
2934240 ATTTTTTAAAATTTATTTTTTAAAAAATTTATG
1 ATTTTTTAAAATTTATTTTTTAAAAAATTTATA
*
2934273 ATTTTTTGTAAATTTA-TTTTT-AAAAATTTATA
1 ATTTTTT-AAAATTTATTTTTTAAAAAATTTATA
2934305 TGAAAAAAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
32 11 0.13
33 33 0.38
34 42 0.48
35 1 0.01
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (33 bp):
ATTTTTTAAAATTTATTTTTTAAAAAATTTATA
Found at i:2934251 original size:67 final size:68
Alignment explanation
Indices: 2934172--2934305 Score: 200
Period size: 67 Copynumber: 2.0 Consensus size: 68
2934162 TTATTATCTG
2934172 ATTTTTTAAAAATTTATTTTTTAAAAAAATTATAATATTTT-AAAATTTTATTTTTAAAAAGTTA
1 ATTTTTTAAAAATTTATTTTTTAAAAAAATTATAATATTTTGAAAA-TTTATTTTTAAAAAGTTA
2934236 TATA
65 TATA
* * * * *
2934240 ATTTTTT-AAAATTTATTTTTTAAAAAATTTATGATTTTTTGTAAATTTATTTTTAAAAATTTAT
1 ATTTTTTAAAAATTTATTTTTTAAAAAAATTATAATATTTTGAAAATTTATTTTTAAAAAGTTAT
2934304 AT
66 AT
2934306 GAAAAAAAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
67 50 0.83
68 10 0.17
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (68 bp):
ATTTTTTAAAAATTTATTTTTTAAAAAAATTATAATATTTTGAAAATTTATTTTTAAAAAGTTAT
ATA
Found at i:2939166 original size:696 final size:696
Alignment explanation
Indices: 2937905--2945570 Score: 13418
Period size: 696 Copynumber: 11.0 Consensus size: 696
2937895 AATCATCTGC
* * * * *
2937905 TCAGATAAAAGAATTAGAGGCACAAATGACAAGCATGGAACTCAAGTTTGAATCATTGC-GAGTA
1 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAG-GCA
* *
2937969 ACAAACAGAGATATGGAGCTTCAGGTAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCA
65 ACAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCA
* *
2938034 AAATATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGCAGAAGAAC
130 AAACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAAC
* * **
2938099 TCTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAAGAATCATTGTCTAA-AACGGAGAATTT
195 TCTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTC-AAGAGTGGAGAATTT
*
2938163 GACAGTGCAGATCAACAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGG
259 GACAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGG
* *
2938228 AAGAACATATTGTATTTAAAGGTGATGAGGCATCCACTGAAATCAAGAGCTTAATGGGTCAGATA
324 AAGAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATA
* * *
2938293 AATACATTGCAGCAGGAGCTGGAGTCCCTGCACAGGCAGCAAGCAGAAATGGAAGTGCAGCTTGA
389 AATACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGA
*
2938358 GAGAAAAACTCAAGCTATTTCAGATTATGTGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAA
454 GAGAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAA
* *
2938423 GCAAGATCAAGGATCAACA-ACGAGATCTGCAGGAGAAAGACGGTTTGCTGGCACAAGTAAAGGA
519 GCAAGATCAAGGATCAACAGA-GAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGA
* *
2938487 TCTGGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGAACTTAAGAGCTA
583 TCTGGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTA
*
2938552 AAATGGAAGACAATGGTCAGTGGAGGGAGGAAAAGGTGGGTTTACAGGT
648 AAATGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
*
2938601 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCAAGTTGGAATCATTGCAGGCAA
1 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAGGCAA
* *
2938666 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAACAAAAAAGCTGGGAGAGCAA
66 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
*
2938731 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAATT
131 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAACT
* * * * **
2938796 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAAGAATTGTCGTCTAGAGCAGAGAATTTGA
196 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
* * *
2938861 CAGTGCAGATCAACAATCTGTTAGTGGACATGGAGTCACTGCACACCCAGAAAGCTCAGTTGGAA
261 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
*
2938926 GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATATA
326 GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
* *
2938991 TACATTGCAGCAGGAGCTGGAGTCCCTGCACAGGCAGAAAGCAGAACTGAAAGTGCAGCTTGAGA
391 TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAGA
*
2939056 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTCAGC
456 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAAGC
2939121 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
521 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
2939186 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAAC-AACA
586 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAA-A
2939250 ATGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
650 ATGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
* *
2939297 TCAGAAAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAGTCATTGCAGGCAA
1 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAGGCAA
*
2939362 CAAACAGAGATATGGAACTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
66 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
*
2939427 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGTTGATGTCAAAAAAGAGAGAAGAAGAACT
131 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAACT
*
2939492 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGGGGAGAATTTGA
196 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
*
2939557 CAGTGCAGATCACCAATCTGTTAGTGGAAATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
261 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
2939622 GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
326 GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
*
2939687 TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAGAGCAGAACTGGAAGTGCAGCTTGAGA
391 TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAGA
*
2939752 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTCAGC
456 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAAGC
*
2939817 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAAAAGGTTTGCTGGCACAAGTGAAGGATCT
521 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
2939882 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
586 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
2939947 TGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
651 TGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
*
2939993 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAGTCATTGCAGGCAA
1 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAGGCAA
*
2940058 CAAACAGAGATATGGAACTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
66 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
*
2940123 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGTTGATGTCAAAAAAGAGAGAAGAAGAACT
131 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAACT
2940188 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
196 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
2940253 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
261 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
2940318 GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
326 GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
*
2940383 TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGCGCAGCTTGAGA
391 TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAGA
*
2940448 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTCAGC
456 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAAGC
2940513 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
521 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
2940578 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
586 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
2940643 TGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
651 TGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
*
2940689 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAGTCATTGCAGGCAA
1 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAGGCAA
*
2940754 CAAACAGAGATATGGAACTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
66 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
* * *
2940819 AACATGGGACTGCAATCCCAAATTTCTGAACTTGTGTTGATGTCAAAAAAGAGAGAAGAAGAACT
131 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAACT
*
2940884 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATTGTTGTCAAGAGTGGAGAATTTGA
196 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
2940949 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
261 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
*
2941014 GAACATATTGTATTTAGAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
326 GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
2941079 TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAGA
391 TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAGA
*
2941144 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTCAGC
456 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAAGC
2941209 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
521 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
2941274 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
586 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
*
2941339 TGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACTGGT
651 TGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
* * *
2941385 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTTGAGTTGGAATCGTTGAAGGCAA
1 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAGGCAA
*
2941450 CAAACAGAGATATGGAGCTGCGGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
66 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
* *
2941515 AACGTAGGACTGCAATCCCAAATTTCTGAACTTGAGTTGATGTCAAAAAAGAGAGAAGAAGAACT
131 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAACT
2941580 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
196 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
* * *
2941645 CAGTGAAGATCACCAATCTGTTGGTGGAAATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
261 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
2941710 GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
326 GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
2941775 TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAGA
391 TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAGA
*
2941840 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATGGTAAGC
456 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAAGC
2941905 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
521 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
2941970 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
586 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
2942035 TGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
651 TGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
* * *
2942081 TCAGAAAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAGTCATTGCAGGAAA
1 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAGGCAA
*
2942146 CAAACAGAGATATGGAACTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
66 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
*
2942211 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGTTGATGTCAAAAAAGAGAGAAGAAGAACT
131 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAACT
*
2942276 CTTATCTGTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
196 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
2942341 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
261 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
*
2942406 GAACATATTGTATTTAAAGGTGATGAAGCAACGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
326 GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
*
2942471 TACATTGCAGCAGGAGCTGGAGTCCCTGCACAGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAGA
391 TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAGA
*
2942536 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATGGTAAGC
456 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAAGC
2942601 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
521 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
* *
2942666 GGAATTCGAGGTTAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
586 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
* * * * *
2942731 TGGAAGAGAATGGCCAGTGGAGGGAGGAAAAGATGGGTTTACAGGC
651 TGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
** *
2942777 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTCAGAATCATTGCAGACAA
1 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAGGCAA
2942842 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
66 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
* **
2942907 AACAT-GGAACTGCAATTCCAAATTTCCAAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAAC
131 AACATAGG-ACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAAC
* * * * *
2942971 TCTTATCTCTCACAAAGAAATTCGAGGATAATGAGAAGGAATCATTGTCTAGAGCGGAGAATTTG
195 TCTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTG
* *
2943036 ACAGTGCAGATCAACAATCTGTTAGTGGACATGGAGTCACTACGTACCCAGAAAGCTCAGTTGGA
260 ACAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGA
2943101 AGAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAA
325 AGAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAA
*
2943166 ATACATTGCAGCACGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAG
390 ATACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAG
2943231 AGAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAAG
455 AGAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAAG
* *
2943296 CAAGACCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGCTTGCTGGCACAAGTGAAGGATC
520 CAAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATC
2943361 TGGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAA
585 TGGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAA
2943426 ATGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
650 ATGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
2943473 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAGGCAA
1 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAGGCAA
* *
2943538 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTTGGAAAGCAA
66 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
*
2943603 AACATGGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAACT
131 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAACT
2943668 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
196 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
2943733 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGGA
261 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTT--G-
2943798 AGAAGAACATATTGTATTT-AAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGA
323 -GAAGAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGA
* *
2943862 T-AATACATTGCAGCAGGAG-T-GATTCCCTGCACAGGCAGAAAGCAGAACTGGAAGTGCCAGCT
387 TAAATACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTG-CAGCT
2943924 TGAGAGAAAAACTCAAGCTATTTCAGATTATTGAGATTGTACATAGAAAAGGCAAAAGAAGAGAT
451 TGAGAGAAAAACTCAAGCTATTTCAGATTA-TGAGATTG-ACATAGAAAAGGCAAAAGAAGAGAT
* *
2943989 GGTAAGCAA-ATCAAGGATC-ACAGAGAGATCTGCGGGATGAGAGAGAAGGTTTGC-GGCACAAG
514 AGTAAGCAAGATCAAGGATCAACAGAGAGATCTGCAGGA-GA-A-AGAAGGTTTGCTGGCACAAG
* * *
2944051 TGAAGGATCTGGAATTTCACGGTTAGTTCTCTAAAGAATCTGAAAGGTTGAATTGGGAAGAGGA-
576 TGAAGGATCTGGAATTTGA-GGTCAGTTCTCTAAAGAATCTGAAAGG-TGAACT-GGAAGAGGAC
* * *
2944115 TTAAGAACTAAAATGGAGAGA-ATTGGCCA-TTGGAGGGAGGGAAAAGATGGGTTTACAGGT
638 TTAAGAACTAAAATGGA-AGACAATGGTCAGTT-GAGGGA-GGAAAAGGTGGGTTTACAGGT
*
2944175 TCAGTATAAAAGAATTAGTAGGCACAAGTTGACAAGGCTTGGGAACTCGAGTCGGAATCATTGCA
1 TCAG-ATAAAAGAATTAG-AGGCACAAG-TGACAA-GCTT-GGAACTCGAGTTGGAATCATTGCA
2944240 GGCAACAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAG
61 GGCAACAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAG
* * ** *
2944305 AGCAAAACATGGGACTGCAATTCCAAATTTCCAAACTTGAGGTGATGTCAAAAAACAGAGAAGAA
126 AGCAAAACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAA
* * * * * *
2944370 GAACTCTTATCTCTCACAAAGAAATTGGAGGATAATGAGAAAGAATCATTGTCTAGAGCGGAGAA
191 GAACTCTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAA
* *
2944435 TTTGACAGTGCAGATCAACAATCTGTTAGTGGACATGGAGTCACTACGTACCCAGAAAGCTCAGT
256 TTTGACAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGT
2944500 TGGAAGAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAG
321 TGGAAGAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAG
*
2944565 ATAAATACATTGCAGCAGGAGCTGGAGTCCTTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCT
386 ATAAATACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCT
2944630 TGAGAGAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAG
451 TGAGAGAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAG
* * *
2944695 TAAGCAAGACCAAGGATCAGCAGAGAGATCTGCAGGAGAAAGAAGGCTTGCTGGCACAAGTGAAG
516 TAAGCAAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAG
* *
2944760 GGTCTGGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTGAGAAC
581 GATCTGGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAAC
* ** *
2944825 TAAAATGGAAGAGAATGGTCAGCGGAGGGAGGAAAATGTGGGTTTACAGGT
646 TAAAATGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
* *
2944876 TCAGATAAAAGAAGTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCTTTGCAGGCAA
1 TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAGGCAA
* *
2944941 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAATCAAAACAGCTTGGAGAGCAA
66 CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
*
2945006 AACATGGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAACT
131 AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAACT
* * * *
2945071 CTTATCTCTCACAAAGAAATTTGAGGATAATGAGAAAGAATCATTGTCTAGAGTGGAGAATTTGA
196 CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
* *
2945136 CAGTGCAGATCAACAATCTGTTAGTGAACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
261 CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
* * *
2945201 GAACTTATTGTATTGAAAGGTGATGAAGCATCGACCGAAATCAAGAGCTTAATGGGTCAGATAAA
326 GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
* *
2945266 TACATTGCAGCAGGAGCTGGAGTCCCTGCATGGGCAGAAAGCAGAACTGGTAGTGCAGCTTGAGA
391 TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAGA
* * * * * *
2945331 GAAAAACTCAATCTATTTCAGATCATGTGATTGAGATAGAAAAGGCCAAAGAAGAGATAGTAAGG
456 GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAAGC
*
2945396 AAGATCAAGGATCAACAGAAAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
521 AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
* * *
2945461 AGAATTTGAGATCAATTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
586 GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
* * * * *
2945526 TTGAAGAGAATAGTCAGTTGAGGGAGGAAAAGGTAGGTTTGCAGG
651 TGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGG
2945571 GTCAAATCTT
Statistics
Matches: 6691, Mismatches: 241, Indels: 76
0.95 0.03 0.01
Matches are distributed among these distances:
695 5 0.00
696 5675 0.85
697 63 0.01
698 43 0.01
699 115 0.02
700 68 0.01
701 69 0.01
702 69 0.01
703 67 0.01
704 114 0.02
705 44 0.01
706 56 0.01
707 303 0.05
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.20
Consensus pattern (696 bp):
TCAGATAAAAGAATTAGAGGCACAAGTGACAAGCTTGGAACTCGAGTTGGAATCATTGCAGGCAA
CAAACAGAGATATGGAGCTGCAGATAGAGAACAAAGCAAGTGAAGCAAAACAGCTGGGAGAGCAA
AACATAGGACTGCAATCCCAAATTTCTGAACTTGAGGTGATGTCAAAAAAGAGAGAAGAAGAACT
CTTATCTCTCACAAAGAAATTTGAGGATAGTGAGAAGGAATCGTTGTCAAGAGTGGAGAATTTGA
CAGTGCAGATCACCAATCTGTTAGTGGACATGGAGTCACTACGCACCCAGAAAGCTCAGTTGGAA
GAACATATTGTATTTAAAGGTGATGAAGCATCGACTGAAATCAAGAGCTTAATGGGTCAGATAAA
TACATTGCAGCAGGAGCTGGAGTCCCTGCACGGGCAGAAAGCAGAACTGGAAGTGCAGCTTGAGA
GAAAAACTCAAGCTATTTCAGATTATGAGATTGACATAGAAAAGGCAAAAGAAGAGATAGTAAGC
AAGATCAAGGATCAACAGAGAGATCTGCAGGAGAAAGAAGGTTTGCTGGCACAAGTGAAGGATCT
GGAATTTGAGGTCAGTTCTCTAAAGAATCTGAAAGGTGAACTGGAAGAGGACTTAAGAACTAAAA
TGGAAGACAATGGTCAGTTGAGGGAGGAAAAGGTGGGTTTACAGGT
Found at i:2950094 original size:19 final size:17
Alignment explanation
Indices: 2950062--2950097 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
2950052 ATTTAATTTT
2950062 ATTAAATATAATTTAAA
1 ATTAAATATAATTTAAA
2950079 ATTAAATTATTAATTTAAA
1 ATTAAA-TA-TAATTTAAA
2950098 TAAAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 2 0.12
19 9 0.53
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTAAATATAATTTAAA
Found at i:2951881 original size:2 final size:2
Alignment explanation
Indices: 2951876--2951903 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2951866 ACACACACAC
2951876 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2951904 TCTATAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2959799 original size:61 final size:60
Alignment explanation
Indices: 2959679--2959800 Score: 201
Period size: 61 Copynumber: 2.0 Consensus size: 60
2959669 TGATTTAGTA
* *
2959679 CTATTCGAAAATCAATAAGCTAATTTCTGTATATCTATTTGTCAGGTTGTCCCCTAAACT
1 CTATTCGAAAATCAATAAGCTAATTTCTATATATCTATTTGTCACGTTGTCCCCTAAACT
2959739 CTATTGCGAAAATCAATAAGCTAATTTCTATGATATCTATTTGTCACGTTGTCCCC-AAACT
1 CTATT-CGAAAATCAATAAGCTAATTTCTAT-ATATCTATTTGTCACGTTGTCCCCTAAACT
2959800 C
1 C
2959801 GAGGCAGTTA
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
60 5 0.09
61 30 0.52
62 23 0.40
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.37
Consensus pattern (60 bp):
CTATTCGAAAATCAATAAGCTAATTTCTATATATCTATTTGTCACGTTGTCCCCTAAACT
Found at i:2961210 original size:17 final size:17
Alignment explanation
Indices: 2961174--2961205 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
2961164 TTTACATTAA
2961174 AATATTATATAAATTTT
1 AATATTATATAAATTTT
2961191 AATATT-TAT-AATTTT
1 AATATTATATAAATTTT
2961206 TTAATCAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 3 0.20
17 6 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATATTATATAAATTTT
Found at i:2962226 original size:22 final size:22
Alignment explanation
Indices: 2962201--2962242 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
2962191 CTAGTTGTTA
*
2962201 ATTTTGTCATACATATAATTGT
1 ATTTGGTCATACATATAATTGT
*
2962223 ATTTGGTCATGCATATAATT
1 ATTTGGTCATACATATAATT
2962243 TATCTGAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.48
Consensus pattern (22 bp):
ATTTGGTCATACATATAATTGT
Found at i:2968221 original size:43 final size:43
Alignment explanation
Indices: 2968173--2968254 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
2968163 GGCGGTGTCA
* * *
2968173 GCTTGTCAGTTCTGGAG-AAATGATTTGTAGTACATTTGACGTG
1 GCTTGTCAGTTCTGCAGCAAA-AATTAGTAGTACATTTGACGTG
2968216 GCTTGTCAGTTCTGCAGCAAAAATTAGTAGTACATTTGA
1 GCTTGTCAGTTCTGCAGCAAAAATTAGTAGTACATTTGA
2968255 TATGTGGTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
43 32 0.91
44 3 0.09
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.35
Consensus pattern (43 bp):
GCTTGTCAGTTCTGCAGCAAAAATTAGTAGTACATTTGACGTG
Found at i:2968666 original size:151 final size:151
Alignment explanation
Indices: 2968302--2968757 Score: 851
Period size: 151 Copynumber: 3.0 Consensus size: 151
2968292 TTGTATTAAT
*
2968302 ATTAAATTGATTGGTCCCTCCGTGGAAATGTGATGTATTGCCCCATTTTTCTTGCTTCTTTTTTA
1 ATTAAACTGATTGGTCCCTCCGTGGAAATGTGATGTATTGCCCCATTTTTCTTGCTTCTTTTTTA
*
2968367 ACCACACAAGTAAACCGATAAGTTTTTTGTTAGGCCCATAAGCATATAACGAGAAATCAACGACT
66 ACCACACAAGTAAACCGATAAGTTTTTTGTTAGGCCCATAAGCATATAACGAGAAATCAACTACT
2968432 TCATATAGCTTTTGTCTTTTC
131 TCATATAGCTTTTGTCTTTTC
2968453 ATTAAACTGATTGGTCCCTCCGTGGAAATGTGATGTATTGCCCCATTTTTCTTGCTTCTTTTTTA
1 ATTAAACTGATTGGTCCCTCCGTGGAAATGTGATGTATTGCCCCATTTTTCTTGCTTCTTTTTTA
*
2968518 ACCACACAAGTAAACCGATAAGTTTTTT-TTAAGCCCATAAGCATATAACGAGAAATCAACTACT
66 ACCACACAAGTAAACCGATAAGTTTTTTGTTAGGCCCATAAGCATATAACGAGAAATCAACTACT
2968582 TCATATAGCTTTTGTCTTTTC
131 TCATATAGCTTTTGTCTTTTC
* *
2968603 ATTAAACTGATTGGTCCCTCCGTGGAAATGTGATGTACTGGCCCATTTTTCTTGCTTCTTTTTTA
1 ATTAAACTGATTGGTCCCTCCGTGGAAATGTGATGTATTGCCCCATTTTTCTTGCTTCTTTTTTA
*
2968668 ACCACACAAGTAAACCGATAAGTTTTTTGTTAGGCCCGTAAGCATATAACGAGAAATCAACTACT
66 ACCACACAAGTAAACCGATAAGTTTTTTGTTAGGCCCATAAGCATATAACGAGAAATCAACTACT
2968733 TCATATAGCTTTTGTCTTTTC
131 TCATATAGCTTTTGTCTTTTC
2968754 ATTA
1 ATTA
2968758 TATAATTTCC
Statistics
Matches: 297, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
150 146 0.49
151 151 0.51
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (151 bp):
ATTAAACTGATTGGTCCCTCCGTGGAAATGTGATGTATTGCCCCATTTTTCTTGCTTCTTTTTTA
ACCACACAAGTAAACCGATAAGTTTTTTGTTAGGCCCATAAGCATATAACGAGAAATCAACTACT
TCATATAGCTTTTGTCTTTTC
Found at i:2971547 original size:14 final size:14
Alignment explanation
Indices: 2971528--2971554 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2971518 ATATATTTTT
2971528 AATAAAAAAATAAA
1 AATAAAAAAATAAA
2971542 AATAAAAAAATAA
1 AATAAAAAAATAA
2971555 TTAAATCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (14 bp):
AATAAAAAAATAAA
Found at i:2976618 original size:21 final size:21
Alignment explanation
Indices: 2976594--2976636 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
2976584 GAATCGTTTG
2976594 ATGAAAATTTTTGAATTTCAA
1 ATGAAAATTTTTGAATTTCAA
2976615 ATGAAAATTTTTGAATTTCAA
1 ATGAAAATTTTTGAATTTCAA
2976636 A
1 A
2976637 GTCGAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (21 bp):
ATGAAAATTTTTGAATTTCAA
Found at i:2976681 original size:21 final size:22
Alignment explanation
Indices: 2976594--2976692 Score: 75
Period size: 21 Copynumber: 4.7 Consensus size: 22
2976584 GAATCGTTTG
* *
2976594 ATGAAAATTTTTGA-ATTTCAA
1 ATGAAAATCTTTGAGTTTTCAA
* *
2976615 ATGAAAATTTTTGA-ATTTCAA
1 ATGAAAATCTTTGAGTTTTCAA
* *
2976636 AGTCG--AAT-ATTAAGTTTTCAA
1 A-T-GAAAATCTTTGAGTTTTCAA
2976657 ATGAAAATCTTTGAGTTTT-AA
1 ATGAAAATCTTTGAGTTTTCAA
*
2976678 ATGAGAATCTTTGAG
1 ATGAAAATCTTTGAG
2976693 ATATGAAATC
Statistics
Matches: 66, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
19 1 0.02
20 4 0.06
21 51 0.77
22 9 0.14
23 1 0.02
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.40
Consensus pattern (22 bp):
ATGAAAATCTTTGAGTTTTCAA
Found at i:2977251 original size:41 final size:41
Alignment explanation
Indices: 2977175--2977786 Score: 407
Period size: 41 Copynumber: 14.9 Consensus size: 41
2977165 TGTCAAAAAG
* * ** *
2977175 CTTTTATTTTTTAAAGTTGTTATGTCTTTGTTTAGATGAGC
1 CTTTTATTTTTCAAAGTTGTTGTACCTCTGTTTAGATGAGC
* * * * *
2977216 CATTTATTTTTCAAAGTTATTGTACCTCTGCTTAGAAGGGC
1 CTTTTATTTTTCAAAGTTGTTGTACCTCTGTTTAGATGAGC
* * * * * *
2977257 CTTTTATTTTTTAAAGTTATTGTGCCCCTATTTAGAGGAGC
1 CTTTTATTTTTCAAAGTTGTTGTACCTCTGTTTAGATGAGC
* * * * * *
2977298 ATTTTATTTTTCAAAATTATTGTGCCTCTATTTAAAAT-AG-
1 CTTTTATTTTTCAAAGTTGTTGTACCTCTGTTT-AGATGAGC
* * * * **
2977338 TTTTTATTTTTCAAAGTTGTTATGCCTCTATTTAGCGGAGC
1 CTTTTATTTTTCAAAGTTGTTGTACCTCTGTTTAGATGAGC
* * * ** *
2977379 TTTTTATTTTTTAAAGTTGTTGTGCCTCTACTTAAATGAGC
1 CTTTTATTTTTCAAAGTTGTTGTACCTCTGTTTAGATGAGC
* * * * *
2977420 TTTTTATTTTTTAAAGTCGTTGTGCCTCTGTTTAGAGGAGC
1 CTTTTATTTTTCAAAGTTGTTGTACCTCTGTTTAGATGAGC
* * *
2977461 CTTTTATTTTTCAAAGTCGTTGTGCCTCTGTTTAAATGAGC
1 CTTTTATTTTTCAAAGTTGTTGTACCTCTGTTTAGATGAGC
* * * * * ** *
2977502 ATTTTATTTTTCAAAGTCGTTGAACCTCTATTTAAAAAAGT
1 CTTTTATTTTTCAAAGTTGTTGTACCTCTGTTTAGATGAGC
** * *
2977543 CTTTTATTTTTCAAAAGTCATTG-AGCCTTTGTTTAAATGAGC
1 CTTTTATTTTTC-AAAGTTGTTGTA-CCTCTGTTTAGATGAGC
* * * *
2977585 TTTTTATTTTTCAAAAGTCGTTG-AGCCTCTATTTAGAGGAGC
1 CTTTTATTTTTC-AAAGTTGTTGTA-CCTCTGTTTAGATGAGC
* * * * *
2977627 CTTTTATTTTTTAAAATTGTTG-AGCCTTTGCTTAGAAGAGC
1 CTTTTATTTTTCAAAGTTGTTGTA-CCTCTGTTTAGATGAGC
** *
2977668 C-TTTATTTTTCAAAGTCATTG-AGCCTTTGTTTAGATGAGC
1 CTTTTATTTTTCAAAGTTGTTGTA-CCTCTGTTTAGATGAGC
* * * * *
2977708 TTTATTTTATTTTTCAAAGTTGTTG-AGCTTATGCTTAAATGAG-
1 ---CTTTTATTTTTCAAAGTTGTTGTA-CCTCTGTTTAGATGAGC
2977751 CTTTTATTTTTCAAAGTTGTTG-AGCCTCTGTTTAGA
1 CTTTTATTTTTCAAAGTTGTTGTA-CCTCTGTTTAGA
2977787 AAAGTATTTA
Statistics
Matches: 470, Mismatches: 92, Indels: 19
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.00
40 95 0.20
41 273 0.58
42 69 0.15
44 32 0.07
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.48
Consensus pattern (41 bp):
CTTTTATTTTTCAAAGTTGTTGTACCTCTGTTTAGATGAGC
Found at i:2977518 original size:123 final size:122
Alignment explanation
Indices: 2977176--2977825 Score: 540
Period size: 123 Copynumber: 5.3 Consensus size: 122
2977166 GTCAAAAAGC
* ** * * * * *
2977176 TTTTATTTTTTAAAGTTGTTATGTCTTTGTTTAGATGAGCCATTTATTTTTCAAAGTTATTGTAC
1 TTTTATTTTTCAAAGTCATTGTGCCTTTGTTTAGATGAGCCTTTTATTTTTCAAAGTTGTTGTGC
* * * * * * *
2977241 CTCTGCTTAGAAGG-GCCTTTTATTTTTTAAAGTTATTGTGCCCCTATTTAGAGGAGCA
66 CTCTGTTTA-AAGGAGCCTTTTATTTTTTAAAGTTGTTGAGCCTCTACTTA-AAGAGCT
* * * * * * *
2977299 TTTTATTTTTCAAAATTATTGTGCCTCTATTTAAAAT-AG-TTTTTATTTTTCAAAGTTGTTATG
1 TTTTATTTTTCAAAGTCATTGTGCCTTTGTTT-AGATGAGCCTTTTATTTTTCAAAGTTGTTGTG
* ** * *
2977362 CCTCTATTTAGCGGAGCTTTTTATTTTTTAAAGTTGTTGTGCCTCTACTTAAATGAGCT
65 CCTCTGTTTAAAGGAGCCTTTTATTTTTTAAAGTTGTTGAGCCTCTACTTAAA-GAGCT
* * * * *
2977421 TTTTATTTTTTAAAGTCGTTGTGCCTCTGTTTAGAGGAGCCTTTTATTTTTCAAAGTCGTTGTGC
1 TTTTATTTTTCAAAGTCATTGTGCCTTTGTTTAGATGAGCCTTTTATTTTTCAAAGTTGTTGTGC
* * * * * * *
2977486 CTCTGTTTAAATGAGCATTTTATTTTTCAAAGTCGTTGAACCTCTATTTAAAAAAG-T
66 CTCTGTTTAAAGGAGCCTTTTATTTTTTAAAGTTGTTGAGCCTCTACTT-AAAGAGCT
* * * *
2977543 CTTTTATTTTTCAAAAGTCATTGAGCCTTTGTTTAAATGAGCTTTTTATTTTTCAAAAGTCGTTG
1 -TTTTATTTTTC-AAAGTCATTGTGCCTTTGTTTAGATGAGCCTTTTATTTTTC-AAAGTTGTTG
* * * * * *
2977608 AGCCTCTATTTAGAGGAGCCTTTTATTTTTTAAAATTGTTGAGCCTTTGCTTAGAAGAGC-
63 TGCCTCTGTTTAAAGGAGCCTTTTATTTTTTAAAGTTGTTGAGCCTCTACTTA-AAGAGCT
* * *
2977668 CTTTATTTTTCAAAGTCATTGAGCCTTTGTTTAGATGAGCTTTATTTTATTTTTCAAAGTTGTTG
1 TTTTATTTTTCAAAGTCATTGTGCCTTTGTTTAGATGAGC---CTTTTATTTTTCAAAGTTGTTG
* * * * * * ** *
2977733 AGCTTATGCTTAAATGAG-CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAAAG-T
63 TGCCTCTGTTTAAAGGAGCCTTTTATTTTTTAAAGTTGTTGAGCCTCTACTTA-AAGAGCT
* * * *
2977792 ATTTATTTTTCGAAAGTTATGGAGCCTTTGTTTA
1 TTTTATTTTTC-AAAGTCATTGTGCCTTTGTTTA
2977826 AAGGAATTTT
Statistics
Matches: 429, Mismatches: 82, Indels: 30
0.79 0.15 0.06
Matches are distributed among these distances:
121 5 0.01
122 93 0.22
123 128 0.30
124 97 0.23
125 95 0.22
126 11 0.03
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (122 bp):
TTTTATTTTTCAAAGTCATTGTGCCTTTGTTTAGATGAGCCTTTTATTTTTCAAAGTTGTTGTGC
CTCTGTTTAAAGGAGCCTTTTATTTTTTAAAGTTGTTGAGCCTCTACTTAAAGAGCT
Found at i:2977716 original size:84 final size:82
Alignment explanation
Indices: 2977176--2977827 Score: 545
Period size: 82 Copynumber: 7.9 Consensus size: 82
2977166 GTCAAAAAGC
* * * * * * *
2977176 TTTTATTTTTTAAAGTTGTT-ATGTCTTTGTTTAGATGAGCCATTTATTTTTCAAAGTTATTGTA
1 TTTTATTTTTCAAAGTCGTTGA-GCCTCTGTTTAGAGGAGCCTTTTATTTTTCAAAGTTGTTG-A
* * *
2977240 -CCTCTGCTTAGAA-GGGCC
64 GCCTTTGCTTA-AATGAGCT
* ** * * * * * * *
2977258 TTTTATTTTTTAAAGTTATTGTGCCCCTATTTAGAGGAGCATTTTATTTTTCAAAATTATTGTGC
1 TTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCCTTTTATTTTTCAAAGTTGTTGAGC
* **
2977323 CTCTATTTAAAAT-AG-T
66 CTTTGCTT-AAATGAGCT
* * * * * *
2977339 TTTTATTTTTCAAAGTTGTT-ATGCCTCTATTTAGCGGAGCTTTTTATTTTTTAAAGTTGTTGTG
1 TTTTATTTTTCAAAGTCGTTGA-GCCTCTGTTTAGAGGAGCCTTTTATTTTTCAAAGTTGTTGAG
* *
2977403 CCTCTACTTAAATGAGCT
65 CCTTTGCTTAAATGAGCT
* * * *
2977421 TTTTATTTTTTAAAGTCGTTGTGCCTCTGTTTAGAGGAGCCTTTTATTTTTCAAAGTCGTTGTGC
1 TTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCCTTTTATTTTTCAAAGTTGTTGAGC
* * *
2977486 CTCTGTTTAAATGAGCA
66 CTTTGCTTAAATGAGCT
* * * ** * **
2977503 TTTTATTTTTCAAAGTCGTTGAACCTCTATTTAAAAAAGTCTTTTATTTTTCAAAAGTCATTGAG
1 TTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCCTTTTATTTTTC-AAAGTTGTTGAG
*
2977568 CCTTTGTTTAAATGAGCT
65 CCTTTGCTTAAATGAGCT
* * *
2977586 TTTTATTTTTCAAAAGTCGTTGAGCCTCTATTTAGAGGAGCCTTTTATTTTTTAAAATTGTTGAG
1 TTTTATTTTTC-AAAGTCGTTGAGCCTCTGTTTAGAGGAGCCTTTTATTTTTCAAAGTTGTTGAG
2977651 CCTTTGCTTAGAA-GAGC-
65 CCTTTGCTTA-AATGAGCT
* * * * *
2977668 CTTTATTTTTCAAAGTCATTGAGCCTTTGTTTAGATGAGCTTTATTTTATTTTTCAAAGTTGTTG
1 TTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC---CTTTTATTTTTCAAAGTTGTTG
2977733 AG-CTTATGCTTAAATGAGC-
63 AGCCTT-TGCTTAAATGAGCT
* ** * *
2977752 TTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAAAG--TATTTATTTTTCGAAAGTTATGGA
1 TTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCCT-TTTATTTTTC-AAAGTTGTTGA
*
2977815 GCCTTTGTTTAAA
64 GCCTTTGCTTAAA
2977828 GGAATTTTTA
Statistics
Matches: 476, Mismatches: 75, Indels: 39
0.81 0.13 0.07
Matches are distributed among these distances:
79 1 0.00
80 14 0.03
81 106 0.22
82 189 0.40
83 65 0.14
84 101 0.21
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.47
Consensus pattern (82 bp):
TTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCCTTTTATTTTTCAAAGTTGTTGAGC
CTTTGCTTAAATGAGCT
Found at i:2977819 original size:165 final size:162
Alignment explanation
Indices: 2977218--2977827 Score: 473
Period size: 165 Copynumber: 3.7 Consensus size: 162
2977208 AGATGAGCCA
* * * * * * ** *
2977218 TTTATTTTTCAAAGTTATTGTACCTCTGCTTAGAA-GGGCCTTTTATTTTTTAAAGTTATTGTGC
1 TTTATTTTTCAAAGTTGTTG-AGCTTTGCTTA-AATGAGCTTTTTATTTTTCAAAGTCGTTGAGC
* * * * * * ** **
2977282 CCCTATTTAGAGGAGCATTTTATTTTTCAAAATTATTGTGCCTCTATTTAAAAT-AG-TTTTTAT
64 CTCTGTTTAGAGGAGC-TTTTATTTTTCAAAGTTGTTGAGCCTTTGCTT-AAATGAGCACTTTAT
** * ****
2977345 TTTTCAAAGTTGTT-ATGCCTCTATTTAGCGGAGCT-T
127 TTTTCAAAGTCATTGA-ACCTCTATTTAAAAAAG-TAT
* * * * * *
2977381 TTTATTTTTTAAAGTTGTTGTGCCTCTACTTAAATGAGCTTTTTATTTTTTAAAGTCGTTGTGCC
1 TTTATTTTTCAAAGTTGTTGAG-CTTTGCTTAAATGAGCTTTTTATTTTTCAAAGTCGTTGAGCC
* * * * *
2977446 TCTGTTTAGAGGAGCCTTTTATTTTTCAAAGTCGTTGTGCCTCTGTTTAAATGAGCATTTTATTT
65 TCTGTTTAGAGGAG-CTTTTATTTTTCAAAGTTGTTGAGCCTTTGCTTAAATGAGCACTTTATTT
* *
2977511 TTCAAAGTCGTTGAACCTCTATTTAAAAAAGTCT
129 TTCAAAGTCATTGAACCTCTATTTAAAAAAGTAT
** *
2977545 TTTATTTTTCAAAAGTCATTGAGCCTTTGTTTAAATGAGCTTTTTATTTTTCAAAAGTCGTTGAG
1 TTTATTTTTC-AAAGTTGTTGAG-CTTTGCTTAAATGAGCTTTTTATTTTTC-AAAGTCGTTGAG
* * *
2977610 CCTCTATTTAGAGGAGCCTTTTATTTTTTAAAATTGTTGAGCCTTTGCTTAGAA-GAGC-CTTTA
63 CCTCTGTTTAGAGGAG-CTTTTATTTTTCAAAGTTGTTGAGCCTTTGCTTA-AATGAGCACTTTA
* * * * **
2977673 TTTTTCAAAGTCATTGAGCCTTTGTTTAGATGAGCTTTAT
126 TTTTTCAAAGTCATTGAACCTCTATTTAAAAAAG---TAT
*
2977713 TTTATTTTTCAAAGTTGTTGAGCTTATGCTTAAATGAGC-TTTTATTTTTCAAAGTTGTTGAGCC
1 TTTATTTTTCAAAGTTGTTGAGCTT-TGCTTAAATGAGCTTTTTATTTTTCAAAGTCGTTGAGCC
** * * *
2977777 TCTGTTTAGAAAAG-TATTTATTTTTCGAAAGTTATGGAGCCTTTGTTTAAA
65 TCTGTTTAGAGGAGCT-TTTATTTTTC-AAAGTTGTTGAGCCTTTGCTTAAA
2977828 GGAATTTTTA
Statistics
Matches: 372, Mismatches: 59, Indels: 31
0.81 0.13 0.07
Matches are distributed among these distances:
162 6 0.02
163 96 0.26
164 53 0.14
165 108 0.29
166 73 0.20
167 24 0.06
168 12 0.03
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (162 bp):
TTTATTTTTCAAAGTTGTTGAGCTTTGCTTAAATGAGCTTTTTATTTTTCAAAGTCGTTGAGCCT
CTGTTTAGAGGAGCTTTTATTTTTCAAAGTTGTTGAGCCTTTGCTTAAATGAGCACTTTATTTTT
CAAAGTCATTGAACCTCTATTTAAAAAAGTAT
Found at i:2978859 original size:172 final size:172
Alignment explanation
Indices: 2978545--2978872 Score: 386
Period size: 172 Copynumber: 1.9 Consensus size: 172
2978535 GAATAAATAC
*
2978545 TAATTATCCAATGATGAAATTTTTAAAAATTTCAAATGATAAATTTCTATAAAATTCCTATGAGA
1 TAATTATCCAATGATGAAATTTTTAAAAATTTCAAATGATAAATTCCTATAAAATTCCTATGAGA
* * * * *
2978610 TAAATTTTTTCTAAATTTATCCCAAATTGTGAAATAATTTATATAAAATTTCAATAACAATAATT
66 GAAATTTCTTCTAAATTTATCCCAAATTGTGAAATAATTTAAATAAAATTTCAAGAAAAATAATT
**
2978675 AATATTTATTTTC-AATAAAAAATTTTGGTTAAAAATATTTAA
131 AATAACTATTTTCTAA-AAAAAATTTTGGTTAAAAATATTTAA
* *
2978717 TAATTA-CTCAATGATGAAATTTTTAAAAATTTTAAATGGTAAATTCCTA-AGAAA-TCTCTA-G
1 TAATTATC-CAATGATGAAATTTTTAAAAATTTCAAATGATAAATTCCTATA-AAATTC-CTATG
* *
2978778 ATGAGAAATTTCTT-TAAATTTATCCTAAA-TGATGGAAA-AATTTAAATGAAATTTCAAGAAAA
63 A-GAGAAATTTCTTCTAAATTTATCCCAAATTG-T-GAAATAATTTAAATAAAATTTCAAGAAAA
*
2978840 ATAATT-GTCACACTATTTTCTTAAAAAAAATTT
125 ATAATTAAT-A-ACTATTTTC-TAAAAAAAATTT
2978873 CTAAATAGGT
Statistics
Matches: 133, Mismatches: 13, Indels: 19
0.81 0.08 0.12
Matches are distributed among these distances:
170 3 0.02
171 48 0.36
172 71 0.53
173 9 0.07
174 2 0.02
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (172 bp):
TAATTATCCAATGATGAAATTTTTAAAAATTTCAAATGATAAATTCCTATAAAATTCCTATGAGA
GAAATTTCTTCTAAATTTATCCCAAATTGTGAAATAATTTAAATAAAATTTCAAGAAAAATAATT
AATAACTATTTTCTAAAAAAAATTTTGGTTAAAAATATTTAA
Found at i:2978983 original size:14 final size:14
Alignment explanation
Indices: 2978964--2978990 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2978954 ATATATTTTC
2978964 AATAAAAAAATAAA
1 AATAAAAAAATAAA
2978978 AATAAAAAAATAA
1 AATAAAAAAATAA
2978991 TTAAACCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (14 bp):
AATAAAAAAATAAA
Found at i:2990474 original size:29 final size:29
Alignment explanation
Indices: 2990412--2990475 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
2990402 TAAGAGGTTT
**
2990412 ACTCACATACAACATCTTTCCATGATTGA
1 ACTCACATACAACATCTTTCCATGATCAA
* * *
2990441 GCTCACGTACAACATCTTTTCATGATCAA
1 ACTCACATACAACATCTTTCCATGATCAA
2990470 ACTCAC
1 ACTCAC
2990476 TCTTATCATC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (29 bp):
ACTCACATACAACATCTTTCCATGATCAA
Found at i:2995929 original size:13 final size:14
Alignment explanation
Indices: 2995902--2995932 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
2995892 CTACTCACTT
2995902 TAAATATTATTTAA
1 TAAATATTATTTAA
2995916 TAAATATT-TTTAA
1 TAAATATTATTTAA
2995929 TAAA
1 TAAA
2995933 AAAATGTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TAAATATTATTTAA
Found at i:2998881 original size:2 final size:2
Alignment explanation
Indices: 2998874--2998906 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
2998864 TGGTACATTC
2998874 AT AT AT AT AT AT AT AT AT AT GA- AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT A
2998907 GGAACTTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 1 0.03
2 27 0.93
3 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:2999719 original size:9 final size:9
Alignment explanation
Indices: 2999675--2999723 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
2999665 TCACATCAAT
2999675 ATTAAAAAA
1 ATTAAAAAA
* *
2999684 ATTTAAAAG
1 ATTAAAAAA
*
2999693 ATTCACAAAA
1 ATT-AAAAAA
2999703 ATTCAAAAAA
1 ATT-AAAAAA
2999713 ATTAAAAAA
1 ATTAAAAAA
2999722 AT
1 AT
2999724 CTTAAATGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
9 18 0.55
10 15 0.45
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.24
Consensus pattern (9 bp):
ATTAAAAAA
Found at i:2999761 original size:8 final size:8
Alignment explanation
Indices: 2999733--2999813 Score: 56
Period size: 8 Copynumber: 9.4 Consensus size: 8
2999723 TCTTAAATGT
2999733 TTTAAAAA
1 TTTAAAAA
2999741 -TTAAAATA
1 TTTAAAA-A
2999749 TTTAAAAA
1 TTTAAAAA
*
2999757 TTTAAAATT
1 TTTAAAA-A
2999766 TTTAAAAAAA
1 TTT--AAAAA
*
2999776 TTATGAAAA
1 TT-TAAAAA
*
2999785 CTTAAAAA
1 TTTAAAAA
2999793 TTTTTAAAAA
1 --TTTAAAAA
*
2999803 TATAAAAA
1 TTTAAAAA
2999811 TTT
1 TTT
2999814 TAATAAAAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
7 6 0.11
8 23 0.40
9 14 0.25
10 9 0.16
11 5 0.09
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (8 bp):
TTTAAAAA
Found at i:2999802 original size:18 final size:17
Alignment explanation
Indices: 2999727--2999847 Score: 83
Period size: 17 Copynumber: 7.1 Consensus size: 17
2999717 AAAAAATCTT
2999727 AAATGTTTTAAAAATT-A
1 AAAT-TTTTAAAAATTAA
* *
2999744 AAATATTTAAAAATTTA
1 AAATTTTTAAAAATTAA
2999761 AAATTTTT---AA--AA
1 AAATTTTTAAAAATTAA
* * *
2999773 AAATTATGAAAACTTAA
1 AAATTTTTAAAAATTAA
2999790 AAATTTTTAAAAATATAA
1 AAATTTTTAAAAAT-TAA
**
2999808 AAATTTTAATAAAAATCCA
1 AAATTTT--TAAAAATTAA
2999827 AAATTTTTCAAAAAATTAA
1 AAATTTTT--AAAAATTAA
2999846 AA
1 AA
2999848 TTAAAAAAAT
Statistics
Matches: 80, Mismatches: 13, Indels: 20
0.71 0.12 0.18
Matches are distributed among these distances:
12 7 0.09
14 2 0.03
15 1 0.01
16 10 0.12
17 26 0.32
18 10 0.12
19 17 0.21
20 7 0.09
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (17 bp):
AAATTTTTAAAAATTAA
Found at i:2999822 original size:20 final size:18
Alignment explanation
Indices: 2999787--2999849 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
2999777 TATGAAAACT
2999787 TAAAAATTTTTAAAAATA
1 TAAAAATTTTTAAAAATA
2999805 TAAAAATTTTAATAAAAAT-
1 TAAAAATTTT--TAAAAATA
**
2999824 CCAAAATTTTTCAAAAA-A
1 TAAAAATTTTT-AAAAATA
*
2999842 TTAAAATT
1 TAAAAATT
2999850 AAAAAAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
17 1 0.03
18 21 0.57
19 8 0.22
20 7 0.19
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAAAATTTTTAAAAATA
Found at i:2999840 original size:19 final size:16
Alignment explanation
Indices: 2999727--2999865 Score: 65
Period size: 17 Copynumber: 8.4 Consensus size: 16
2999717 AAAAAATCTT
*
2999727 AAATGTTTTAAAAATTA
1 AAAT-TTTTAAAAAATA
* *
2999744 AAATATTTAAAAATTTA
1 AAATTTTTAAAAA-ATA
2999761 AAATTTTT---AAA-A
1 AAATTTTTAAAAAATA
* * **
2999773 AAATTATGAAAACTTAA
1 AAATTTTTAAAAAAT-A
2999790 AAATTTTTAAAAATATAA
1 AAATTTTTAAAAA-AT-A
*
2999808 AAATTTTAATAAAAATCCA
1 AAATTTTTA-AAAAAT--A
2999827 AAATTTTTCAAAAAATTA
1 AAATTTTT-AAAAAA-TA
*
2999845 AAA--TTAAAAAAATA
1 AAATTTTTAAAAAATA
2999859 AAATTTT
1 AAATTTT
2999866 CTTAAAATAC
Statistics
Matches: 94, Mismatches: 15, Indels: 27
0.69 0.11 0.20
Matches are distributed among these distances:
12 7 0.07
14 7 0.07
15 7 0.07
16 12 0.13
17 25 0.27
18 17 0.18
19 17 0.18
20 2 0.02
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (16 bp):
AAATTTTTAAAAAATA
Found at i:2999848 original size:18 final size:18
Alignment explanation
Indices: 2999789--2999865 Score: 60
Period size: 20 Copynumber: 4.4 Consensus size: 18
2999779 TGAAAACTTA
2999789 AAAATTTTT-AAAAATAT
1 AAAATTTTTAAAAAATAT
*
2999806 AAAAATTTTAATAAAA-AT
1 AAAATTTTTAA-AAAATAT
2999824 CCAAAATTTTTCAAAAAAT-T
1 --AAAATTTTT-AAAAAATAT
2999844 AAAA---TTAAAAAA-AT
1 AAAATTTTTAAAAAATAT
2999858 AAAATTTT
1 AAAATTTT
2999866 CTTAAAATAC
Statistics
Matches: 48, Mismatches: 2, Indels: 20
0.69 0.03 0.29
Matches are distributed among these distances:
14 11 0.23
15 2 0.04
17 9 0.19
18 7 0.15
19 4 0.08
20 13 0.27
21 2 0.04
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAATTTTTAAAAAATAT
Found at i:2999906 original size:25 final size:26
Alignment explanation
Indices: 2999878--2999944 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 26
2999868 TAAAATACAA
2999878 AAAAAATCACAAAA-CTAAAAAA-TTG
1 AAAAAATCA-AAAATCTAAAAAATTTG
2999903 AAAATAA-CAAAAATCTAAAAAATTTTG
1 AAAA-AATCAAAAATCTAAAAAA-TTTG
2999930 AAAAAATCTAAAAAT
1 AAAAAATC-AAAAAT
2999945 TTTTACAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
24 4 0.11
25 14 0.39
26 4 0.11
27 8 0.22
28 6 0.17
ACGTcount: A:0.67, C:0.09, G:0.03, T:0.21
Consensus pattern (26 bp):
AAAAAATCAAAAATCTAAAAAATTTG
Found at i:2999948 original size:20 final size:20
Alignment explanation
Indices: 2999911--2999947 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
2999901 TGAAAATAAC
2999911 AAAAATCTAAAAAATTTTGA
1 AAAAATCTAAAAAATTTTGA
2999931 AAAAATCT-AAAAATTTT
1 AAAAATCTAAAAAATTTT
2999948 TACAAAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (20 bp):
AAAAATCTAAAAAATTTTGA
Found at i:2999954 original size:20 final size:20
Alignment explanation
Indices: 2999909--2999970 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
2999899 ATTGAAAATA
*
2999909 ACAAAAATCTAAAAAATTTTG
1 ACAAAAATCT-AAAAATTTTT
2999930 A-AAAAATCTAAAAATTTTT
1 ACAAAAATCTAAAAATTTTT
* *
2999949 ACAAAATTGTAAAAATATTTT
1 ACAAAAATCTAAAAAT-TTTT
2999970 A
1 A
2999971 AATTTTATGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 10 0.28
20 20 0.56
21 6 0.17
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.34
Consensus pattern (20 bp):
ACAAAAATCTAAAAATTTTT
Found at i:3000051 original size:19 final size:20
Alignment explanation
Indices: 3000014--3000067 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 20
3000004 ACAATTTTAA
* *
3000014 ATTTTTATATATTTATGAAT
1 ATTTTTAGATTTTTATGAAT
*
3000034 -TTTTTAGATTTTTTTGAAT
1 ATTTTTAGATTTTTATGAAT
* *
3000053 ATTATTGGATTTTTA
1 ATTTTTAGATTTTTA
3000068 ATAAAATTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (20 bp):
ATTTTTAGATTTTTATGAAT
Found at i:3000152 original size:19 final size:21
Alignment explanation
Indices: 3000128--3000174 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 21
3000118 TGCATATTTC
*
3000128 ATTTTTTTGAA-AA-TTTTTA
1 ATTTTTTTAAACAATTTTTTA
3000147 A-TTTTTTAAACAATTTTTTA
1 ATTTTTTTAAACAATTTTTTA
3000167 ATTTTTTT
1 ATTTTTTT
3000175 TTTAAATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.33
19 3 0.12
20 7 0.29
21 6 0.25
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
ATTTTTTTAAACAATTTTTTA
Found at i:3000219 original size:41 final size:40
Alignment explanation
Indices: 3000174--3000251 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 40
3000164 TTAATTTTTT
3000174 TTTTAA-ATTTGTAAAAAATTTTAAGAATTTTTTTAATAAAA
1 TTTTAAGATTTGTAAAAAATTTT-AG-ATTTTTTTAATAAAA
* *
3000215 TTTTAAGGTTTTTTAAAAAATTTTAGATTTTTTTAAT
1 TTTTAA-GATTTGTAAAAAATTTTAGATTTTTTTAAT
3000252 TTTCAATTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
41 17 0.52
42 2 0.06
43 14 0.42
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (40 bp):
TTTTAAGATTTGTAAAAAATTTTAGATTTTTTTAATAAAA
Found at i:3000246 original size:20 final size:20
Alignment explanation
Indices: 3000185--3000250 Score: 80
Period size: 20 Copynumber: 3.1 Consensus size: 20
3000175 TTTAAATTTG
3000185 TAAAAAATTTTAAGAATTTTTT
1 TAAAAAATTTT-AG-ATTTTTT
*
3000207 TAATAAAATTTTA-AGGTTTTT
1 TAA-AAAATTTTAGA-TTTTTT
3000228 TAAAAAATTTTAGATTTTTT
1 TAAAAAATTTTAGATTTTTT
3000248 TAA
1 TAA
3000251 TTTTCAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
20 18 0.46
21 9 0.23
22 4 0.10
23 8 0.21
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (20 bp):
TAAAAAATTTTAGATTTTTT
Found at i:3000287 original size:20 final size:22
Alignment explanation
Indices: 3000262--3000302 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
3000252 TTTCAATTTG
3000262 TTTAAA-TG-AAGTTTTTTTAC
1 TTTAAATTGTAAGTTTTTTTAC
3000282 TTTAAATTTGTAAGTTTTTTT
1 TTTAAA-TTGTAAGTTTTTTT
3000303 TTTTATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
22 2 0.11
23 10 0.56
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (22 bp):
TTTAAATTGTAAGTTTTTTTAC
Found at i:3000364 original size:21 final size:21
Alignment explanation
Indices: 3000340--3000380 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3000330 TAAAATTTTC
3000340 ATTTTTTTGAACTATTTAAGA
1 ATTTTTTTGAACTATTTAAGA
* *
3000361 ATTTTTTTGAATTTTTTAAG
1 ATTTTTTTGAACTATTTAAG
3000381 TTTTAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.59
Consensus pattern (21 bp):
ATTTTTTTGAACTATTTAAGA
Found at i:3000392 original size:29 final size:28
Alignment explanation
Indices: 3000360--3000419 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
3000350 ACTATTTAAG
* *
3000360 AATTTTTTTGAAT-TTTTTAAGTTTTAATA
1 AATTTTTTT-AATATTTATAA-TTTTAAAA
3000389 AATTTTTTTAATATTTATAATTTTAAAA
1 AATTTTTTTAATATTTATAATTTTAAAA
3000417 AAT
1 AAT
3000420 ATTTCATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (28 bp):
AATTTTTTTAATATTTATAATTTTAAAA
Found at i:3000408 original size:19 final size:19
Alignment explanation
Indices: 3000372--3000412 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
3000362 TTTTTTTGAA
3000372 TTTTTTAAGTTTTAATAAAT
1 TTTTTTAAGTTTTAAT-AAT
3000392 TTTTTTAA-TATTT-ATAAT
1 TTTTTTAAGT-TTTAATAAT
3000410 TTT
1 TTT
3000413 AAAAAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
18 6 0.30
19 3 0.15
20 11 0.55
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTTTAAGTTTTAATAAT
Found at i:3000420 original size:19 final size:19
Alignment explanation
Indices: 3000398--3000489 Score: 62
Period size: 19 Copynumber: 4.8 Consensus size: 19
3000388 AAATTTTTTT
3000398 AATATTTATAATTTTAAAA
1 AATATTTATAATTTTAAAA
**
3000417 AATATTTCAT-ATTTTTCAA
1 AATATTT-ATAATTTTAAAA
** * *
3000436 TTTTTTTATAATTTTTAAA
1 AATATTTATAATTTTAAAA
*
3000455 AATATTTCAT-ATGTTAAAA
1 AATATTT-ATAATTTTAAAA
* *
3000474 AGATAATTAAAATTTT
1 A-ATATTTATAATTTT
3000490 TTTATTAATA
Statistics
Matches: 54, Mismatches: 14, Indels: 9
0.70 0.18 0.12
Matches are distributed among these distances:
18 2 0.04
19 39 0.72
20 13 0.24
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.51
Consensus pattern (19 bp):
AATATTTATAATTTTAAAA
Found at i:3007784 original size:29 final size:28
Alignment explanation
Indices: 3007740--3007798 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
3007730 AAATTAAATA
** *
3007740 TTATATTTTGATTTTGTTATTTATTAAT
1 TTATATTTTGATTTTGAAATTTAATAAT
3007768 TTATGATTTT-ATATTTGAAATTTAATAAT
1 TTAT-ATTTTGAT-TTTGAAATTTAATAAT
3007797 TT
1 TT
3007799 TTTGTTGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.63
Consensus pattern (28 bp):
TTATATTTTGATTTTGAAATTTAATAAT
Found at i:3010175 original size:23 final size:23
Alignment explanation
Indices: 3010149--3010194 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
3010139 AAATAAACTA
3010149 AATTGCAGCTTAAAAAAAACATT
1 AATTGCAGCTTAAAAAAAACATT
** *
3010172 AATTGCTTCTTAAAAACAACATT
1 AATTGCAGCTTAAAAAAAACATT
3010195 CGACAGACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (23 bp):
AATTGCAGCTTAAAAAAAACATT
Found at i:3016183 original size:2 final size:2
Alignment explanation
Indices: 3016178--3016206 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
3016168 TATATATATA
3016178 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
3016207 TTCAAGTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:3024291 original size:31 final size:31
Alignment explanation
Indices: 3024253--3024313 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
3024243 TTTTGTCATG
3024253 TAATGATGTGATGGGAAAACGAAAAAGATAC
1 TAATGATGTGATGGGAAAACGAAAAAGATAC
3024284 TAATGATGTGATGGGAAAACGAAAAAGATA
1 TAATGATGTGATGGGAAAACGAAAAAGATA
3024314 GTTCGAGACC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.49, C:0.05, G:0.26, T:0.20
Consensus pattern (31 bp):
TAATGATGTGATGGGAAAACGAAAAAGATAC
Found at i:3028642 original size:15 final size:16
Alignment explanation
Indices: 3028616--3028645 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
3028606 TATTAATTAA
3028616 AAAGAAATTAAAGAAT
1 AAAGAAATTAAAGAAT
3028632 AAAGAAA-TAAAGAA
1 AAAGAAATTAAAGAA
3028646 ATTTGGGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (16 bp):
AAAGAAATTAAAGAAT
Found at i:3029322 original size:18 final size:18
Alignment explanation
Indices: 3029299--3029333 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3029289 GCGCGCTTGT
*
3029299 TTCTATGCGTTCATGTTG
1 TTCTATGCGTCCATGTTG
*
3029317 TTCTATGTGTCCATGTT
1 TTCTATGCGTCCATGTT
3029334 TATGGTAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.17, G:0.20, T:0.51
Consensus pattern (18 bp):
TTCTATGCGTCCATGTTG
Found at i:3040364 original size:61 final size:61
Alignment explanation
Indices: 3040269--3040390 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
3040259 CTTACTTTCT
* * *
3040269 TCCTCACCAAACCTTTAAACACTTTCATTGATTTGAACATTAAAATGCTTCCCAAATACTA
1 TCCTCACCAAAACTTTAAACACTTTCACTGATTTGAACATTAAAATGCTTCCCAAAAACTA
*
3040330 TCCTCACCAAAACTTTAGACACTTTCACTGATTTGAACATTAAAATGCTTCCCAAAAACTA
1 TCCTCACCAAAACTTTAAACACTTTCACTGATTTGAACATTAAAATGCTTCCCAAAAACTA
3040391 ACTTCGACAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (61 bp):
TCCTCACCAAAACTTTAAACACTTTCACTGATTTGAACATTAAAATGCTTCCCAAAAACTA
Found at i:3045447 original size:18 final size:19
Alignment explanation
Indices: 3045412--3045450 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
3045402 TATATATTAA
**
3045412 TGTAATGTTTAATTATAAT
1 TGTAATGTTTAAAAATAAT
3045431 TGTAAT-TTTAAAAATAAT
1 TGTAATGTTTAAAAATAAT
3045449 TG
1 TG
3045451 ATTTTTTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
TGTAATGTTTAAAAATAAT
Found at i:3046324 original size:18 final size:19
Alignment explanation
Indices: 3046292--3046345 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
3046282 AAATTTAAAT
*
3046292 ATTATTTTATATAAATT-TA
1 ATTATTTAAT-TAAATTATA
*
3046311 GTTATTTAATTAAATTATA
1 ATTATTTAATTAAATTATA
3046330 ATTA-TTAATT-AATTAT
1 ATTATTTAATTAAATTAT
3046346 TCAATGATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 6 0.19
18 12 0.39
19 13 0.42
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
ATTATTTAATTAAATTATA
Found at i:3050817 original size:13 final size:14
Alignment explanation
Indices: 3050782--3050820 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
3050772 TATTAATTTT
*
3050782 TATAAATTATTTAA
1 TATAAATTTTTTAA
*
3050796 TATAAATTTTTTAT
1 TATAAATTTTTTAA
3050810 TA-AAATTTTTT
1 TATAAATTTTTT
3050821 TAATTATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 9 0.39
14 14 0.61
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATAAATTTTTTAA
Found at i:3050817 original size:24 final size:23
Alignment explanation
Indices: 3050763--3050817 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
3050753 ATCATCAATT
*
3050763 AAATTTAAATATTAATTTTTATA
1 AAATTTAAATATAAATTTTTATA
3050786 AATTATTT-AATATAAATTTTTTATTA
1 AA--ATTTAAATATAAA-TTTTTA-TA
3050812 AAATTT
1 AAATTT
3050818 TTTTAATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
23 2 0.07
24 11 0.41
25 10 0.37
26 4 0.15
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
AAATTTAAATATAAATTTTTATA
Done.