Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 116 of 131
Found at i:20816394 original size:29 final size:29
Alignment explanation
Indices: 20816347--20816414 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
20816337 TCATTTTTTA
* * *
20816347 TTATTTTTATTCTCATTTTG-GTTAGTTT
1 TTATTTTTATTATAATTTTGAGTTAATTT
20816375 TTATTTTTATTAATAATTTTGAGTTAATTT
1 TTATTTTTATT-ATAATTTTGAGTTAATTT
*
20816405 TT-TTGTTATT
1 TTATTTTTATT
20816415 TGATAGAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 11 0.32
29 14 0.41
30 9 0.26
ACGTcount: A:0.21, C:0.03, G:0.09, T:0.68
Consensus pattern (29 bp):
TTATTTTTATTATAATTTTGAGTTAATTT
Found at i:20816407 original size:31 final size:28
Alignment explanation
Indices: 20816342--20816407 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 28
20816332 TTCCATCATT
* *
20816342 TTTTATTATTTTTATTCTCATTTTGGTTA
1 TTTT-TTATTTTTATTATAATTTTGGTTA
*
20816371 GTTTTTATTTTTATTAATAATTTTGAGTTAA
1 TTTTTTATTTTTATT-ATAATTTTG-GTT-A
20816402 TTTTTT
1 TTTTTT
20816408 TGTTATTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 11 0.37
29 10 0.33
30 3 0.10
31 6 0.20
ACGTcount: A:0.21, C:0.03, G:0.08, T:0.68
Consensus pattern (28 bp):
TTTTTTATTTTTATTATAATTTTGGTTA
Found at i:20816913 original size:20 final size:21
Alignment explanation
Indices: 20816872--20816926 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
20816862 GTAATGACAA
20816872 TAAAAACTAAAAATGATAAAAT
1 TAAAAA-TAAAAATGATAAAAT
* *
20816894 TAAAATTAAAAA-GATTAAAT
1 TAAAAATAAAAATGATAAAAT
20816914 TAGAAAATAAAAA
1 TA-AAAATAAAAA
20816927 AAAATTAACC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 9 0.31
21 15 0.52
22 5 0.17
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (21 bp):
TAAAAATAAAAATGATAAAAT
Found at i:20819987 original size:5 final size:5
Alignment explanation
Indices: 20819944--20819971 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
20819934 TTATTTTCGT
20819944 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
20819972 ACTAAGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:20821303 original size:19 final size:19
Alignment explanation
Indices: 20821279--20821336 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
20821269 AAAATATAAA
*
20821279 TAGAAAAAAAATCAAAAGT
1 TAGAAATAAAATCAAAAGT
** * *
20821298 TAGAAATCCATTAAAAAGT
1 TAGAAATAAAATCAAAAGT
20821317 TAGATAATAAAATCAAAAGT
1 TAGA-AATAAAATCAAAAGT
20821337 CTATTATGAT
Statistics
Matches: 29, Mismatches: 9, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
19 18 0.62
20 11 0.38
ACGTcount: A:0.60, C:0.07, G:0.10, T:0.22
Consensus pattern (19 bp):
TAGAAATAAAATCAAAAGT
Found at i:20822204 original size:21 final size:22
Alignment explanation
Indices: 20822186--20822227 Score: 68
Period size: 21 Copynumber: 1.9 Consensus size: 22
20822176 ATAGATAATC
20822186 AAATAAAT-AAATAAAATAACT
1 AAATAAATAAAATAAAATAACT
20822207 AAATAAATAAAATTAAAATAA
1 AAATAAATAAAA-TAAAATAA
20822228 AATAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.42
22 3 0.16
23 8 0.42
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATAAAATAAAATAACT
Found at i:20823136 original size:43 final size:43
Alignment explanation
Indices: 20823047--20823386 Score: 285
Period size: 43 Copynumber: 7.7 Consensus size: 43
20823037 ACAAATTAAA
* * * *
20823047 CTCCTTTATACAAAGG-TAAACAAATTTAAATTAAAAAAT-AGG
1 CTCCTCTATACAAAGGCTAAACAACTTTAAAATAAGAAATGA-G
* *
20823089 CTCCTCTATACAAAGGCTAAACAACTTTAAAATAGGAAATGAA
1 CTCCTCTATACAAAGGCTAAACAACTTTAAAATAAGAAATGAG
* *
20823132 CTCCTCTATACATAA-GCTAAATAACTTTAAAATTAAGAAATGTG
1 CTCCTCTATACA-AAGGCTAAACAACTTTAAAA-TAAGAAATGAG
* * * ** * *
20823176 CTCGTATTTACTGAGGCTAAACAATTTTGAAATAAGAAAT-AGG
1 CTCCTCTATACAAAGGCTAAACAACTTTAAAATAAGAAATGA-G
* * *
20823219 CTCCTCTCTACAAAGGCTAAACAAAACAATTTTAAAATAGGAAATGGG
1 CTCCTCTATACAAAGGCTAAAC--AAC---TTTAAAATAAGAAATGAG
* * *
20823267 CTGCTCTATACAAAGGCTAAACAATTTTAAAATTAGAAAATG-G
1 CTCCTCTATACAAAGGCTAAACAACTTTAAAATAAG-AAATGAG
* * * * *
20823310 GTCCTTTTATACAAAGGCTAAAACAACTTTAAATTAAAAAATGGG
1 CTCC-TCTATACAAAGGCT-AAACAACTTTAAAATAAGAAATGAG
* *
20823355 CTCATCTATACAAAAGCTAAACAACTTTAAAA
1 CTCCTCTATACAAAGGCTAAACAACTTTAAAA
20823387 ACTTCAAATA
Statistics
Matches: 237, Mismatches: 45, Indels: 31
0.76 0.14 0.10
Matches are distributed among these distances:
42 15 0.06
43 99 0.42
44 68 0.29
45 19 0.08
46 2 0.01
48 34 0.14
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.27
Consensus pattern (43 bp):
CTCCTCTATACAAAGGCTAAACAACTTTAAAATAAGAAATGAG
Found at i:20823263 original size:48 final size:48
Alignment explanation
Indices: 20823194--20823378 Score: 156
Period size: 48 Copynumber: 4.0 Consensus size: 48
20823184 TACTGAGGCT
* *
20823194 AAACAATTTTGAAATAAGAAATAGGCTCCTCTCTACAAAGGCTAAACA
1 AAACAATTTTAAAATAAGAAATAGGCTCCTCTATACAAAGGCTAAACA
* * *
20823242 AAACAATTTTAAAATAGGAAATGGGCTGCTCTATACAAAGGCT-----
1 AAACAATTTTAAAATAAGAAATAGGCTCCTCTATACAAAGGCTAAACA
* * *
20823285 AAACAATTTTAAAATTAGAAA-ATGGGTCCTTTTATACAAAGGCT----A
1 AAACAATTTTAAAATAAGAAATA-GGCTCC-TCTATACAAAGGCTAAACA
* * * * * *
20823330 AAACAACTTTAAATTAAAAAATGGGCTCATCTATACAAAAGCTAAACA
1 AAACAATTTTAAAATAAGAAATAGGCTCCTCTATACAAAGGCTAAACA
20823378 A
1 A
20823379 CTTTAAAAAC
Statistics
Matches: 109, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
43 23 0.21
44 25 0.23
45 21 0.19
48 40 0.37
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.25
Consensus pattern (48 bp):
AAACAATTTTAAAATAAGAAATAGGCTCCTCTATACAAAGGCTAAACA
Found at i:20823308 original size:135 final size:132
Alignment explanation
Indices: 20823047--20823386 Score: 385
Period size: 135 Copynumber: 2.6 Consensus size: 132
20823037 ACAAATTAAA
20823047 CTCCT-TTATACAAAGG-TAAACAAATTTAAATTAAAAAATAGGCTCCTCTATACAAAGGCTAAA
1 CTCCTATTATACAAAGGCTAAACAAATTTAAATTAAAAAATAGGCTCCTCTATACAAAGGCTAAA
*
20823110 C--AACTTTAAAATAGGAAATGAACTCCTCTATACATAAGCTAAATAACTTTAAAATTAAGAAAT
66 CAAAACTTTAAAATAGGAAATGAACTCCTCTATACATAAGCTAAACAACTTTAAAATTAAGAAAT
20823173 GTG
131 G-G
* ** * * *
20823176 CTCGTATT-TACTGAGGCTAAACAATTTTGAAA-TAAGAAATAGGCTCCTCTCTACAAAGGCTAA
1 CTCCTATTATACAAAGGCTAAACAAATTT-AAATTAAAAAATAGGCTCCTCTATACAAAGGCTAA
** * *
20823239 ACAAAACAATTTTAAAATAGGAAATGGGCTGCTCTATACA-AAGGCTAAACAATTTTAAAATT-A
65 ACAAAAC---TTTAAAATAGGAAATGAACTCCTCTATACATAA-GCTAAACAACTTTAAAATTAA
20823302 GAAAATGG
126 G-AAATGG
* * * * * *
20823310 GTCCTTTTATACAAAGGCTAAAACAACTTTAAATTAAAAAATGGGCTCATCTATACAAAAGCTAA
1 CTCCTATTATACAAAGGCT-AAACAAATTTAAATTAAAAAATAGGCTCCTCTATACAAAGGCTAA
20823375 AC--AACTTTAAAA
65 ACAAAACTTTAAAA
20823387 ACTTCAAATA
Statistics
Matches: 176, Mismatches: 22, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
129 10 0.06
130 43 0.24
131 10 0.06
132 3 0.02
134 13 0.07
135 60 0.34
136 37 0.21
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.27
Consensus pattern (132 bp):
CTCCTATTATACAAAGGCTAAACAAATTTAAATTAAAAAATAGGCTCCTCTATACAAAGGCTAAA
CAAAACTTTAAAATAGGAAATGAACTCCTCTATACATAAGCTAAACAACTTTAAAATTAAGAAAT
GG
Found at i:20823472 original size:22 final size:22
Alignment explanation
Indices: 20823444--20823509 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 22
20823434 AAATTTTAGC
*
20823444 TTGAAATCCAAAGGTTCACACT
1 TTGAAATCCAAAGGTCCACACT
**
20823466 TTGAAATTTTAAAGGTCCACACT
1 TTGAAA-TCCAAAGGTCCACACT
**
20823489 TTGAAATTTTAAAGGTCCACA
1 TTGAAA-TCCAAAGGTCCACA
20823510 AACTACAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 6 0.15
23 34 0.85
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (22 bp):
TTGAAATCCAAAGGTCCACACT
Found at i:20823486 original size:23 final size:23
Alignment explanation
Indices: 20823453--20823509 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
20823443 CTTGAAATCC
*
20823453 AAAGGTTCACACTTTGAAATTTT
1 AAAGGTCCACACTTTGAAATTTT
20823476 AAAGGTCCACACTTTGAAATTTT
1 AAAGGTCCACACTTTGAAATTTT
20823499 AAAGGTCCACA
1 AAAGGTCCACA
20823510 AACTACAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.32
Consensus pattern (23 bp):
AAAGGTCCACACTTTGAAATTTT
Found at i:20823937 original size:18 final size:16
Alignment explanation
Indices: 20823901--20823951 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
20823891 AATAATCCAA
20823901 ATATTCGCAAGAATTC
1 ATATTCGCAAGAATTC
*
20823917 ATATTTGCAAGAATTTTC
1 ATATTCGCAAGAA--TTC
**
20823935 ATATTCATAAGAATTC
1 ATATTCGCAAGAATTC
20823951 A
1 A
20823952 AATTTGTAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 16 0.55
18 13 0.45
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (16 bp):
ATATTCGCAAGAATTC
Found at i:20823961 original size:16 final size:16
Alignment explanation
Indices: 20823909--20823969 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
20823899 AAATATTCGC
* *
20823909 AAGAATTCATATTTGC
1 AAGAATTCAAATTTGT
* **
20823925 AAGAATTTTCATATTCAT
1 AAGAA--TTCAAATTTGT
20823943 AAGAATTCAAATTTGT
1 AAGAATTCAAATTTGT
*
20823959 AAGACTTCAAA
1 AAGAATTCAAA
20823970 GATTCACAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
16 23 0.64
18 13 0.36
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.36
Consensus pattern (16 bp):
AAGAATTCAAATTTGT
Found at i:20824041 original size:17 final size:17
Alignment explanation
Indices: 20824021--20824085 Score: 94
Period size: 17 Copynumber: 3.8 Consensus size: 17
20824011 ATAACTTCAA
* *
20824021 GTTCGCAAGAATTTTAG
1 GTTCACAAGAATTTAAG
*
20824038 GTTCACAAAAATTTAAG
1 GTTCACAAGAATTTAAG
20824055 GTTCACAAGAATTTAAG
1 GTTCACAAGAATTTAAG
*
20824072 GTTCGCAAGAATTT
1 GTTCACAAGAATTT
20824086 TCAAATTCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 43 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (17 bp):
GTTCACAAGAATTTAAG
Found at i:20824100 original size:18 final size:17
Alignment explanation
Indices: 20824026--20824100 Score: 71
Period size: 17 Copynumber: 4.4 Consensus size: 17
20824016 TTCAAGTTCG
* *
20824026 CAAGAATTTTAGGTTCA
1 CAAGAATTTAAGATTCA
* *
20824043 CAAAAATTTAAGGTTCA
1 CAAGAATTTAAGATTCA
* *
20824060 CAAGAATTTAAGGTTCG
1 CAAGAATTTAAGATTCA
20824077 CAAGAATTTTCAA-ATTCA
1 CAAGAA-TTT-AAGATTCA
20824095 CAAGAA
1 CAAGAA
20824101 ATTCAACTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
17 36 0.72
18 12 0.24
19 2 0.04
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (17 bp):
CAAGAATTTAAGATTCA
Found at i:20825506 original size:19 final size:19
Alignment explanation
Indices: 20825482--20825534 Score: 79
Period size: 19 Copynumber: 2.8 Consensus size: 19
20825472 GTTTAAGTCT
*
20825482 TTTTTTTTCTCATTTTTTA
1 TTTTTTTTCTCATTTTTCA
*
20825501 TTTTTTTGCTCATTTTTCA
1 TTTTTTTTCTCATTTTTCA
*
20825520 TCTTTTTTCTCATTT
1 TTTTTTTTCTCATTT
20825535 CTTTTATCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.09, C:0.15, G:0.02, T:0.74
Consensus pattern (19 bp):
TTTTTTTTCTCATTTTTCA
Found at i:20825812 original size:10 final size:9
Alignment explanation
Indices: 20825797--20825821 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
20825787 CATTAATTTC
20825797 TTTTTTTTA
1 TTTTTTTTA
20825806 TTTTTTTTA
1 TTTTTTTTA
20825815 TTTTTTT
1 TTTTTTT
20825822 ATCATTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:20830638 original size:24 final size:24
Alignment explanation
Indices: 20830611--20830676 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
20830601 ATATATTTAA
*
20830611 AAAATAGAT-AATCAATAAATAAAT
1 AAAATAGATAAATAAATAAAT-AAT
*
20830635 AAAATAGTTAAATAAATAAATAAT
1 AAAATAGATAAATAAATAAATAAT
*
20830659 AAAATA-A-AAATACATAAA
1 AAAATAGATAAATAAATAAA
20830677 GTCAGTTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.27
24 17 0.46
25 10 0.27
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.24
Consensus pattern (24 bp):
AAAATAGATAAATAAATAAATAAT
Found at i:20831498 original size:2 final size:2
Alignment explanation
Indices: 20831491--20831521 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
20831481 ATTTGAGTTT
20831491 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20831522 GATTTTAGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20833559 original size:14 final size:14
Alignment explanation
Indices: 20833540--20833572 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
20833530 ATTTTAATAA
*
20833540 ATTTTGATATATAT
1 ATTTTGATATAGAT
20833554 ATTTTGATATAGAT
1 ATTTTGATATAGAT
20833568 ATTTT
1 ATTTT
20833573 TAGTAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (14 bp):
ATTTTGATATAGAT
Found at i:20839516 original size:16 final size:15
Alignment explanation
Indices: 20839497--20839537 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
20839487 TTTTTTTGTA
20839497 GGTTATTTTTTCAATT
1 GGTTATTTTTT-AATT
20839513 GGTTATTATTTTAATT
1 GGTTATT-TTTTAATT
20839529 -G-TATTTTTT
1 GGTTATTTTTT
20839538 TATGTTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 4 0.17
14 4 0.17
15 1 0.04
16 11 0.46
17 4 0.17
ACGTcount: A:0.20, C:0.02, G:0.12, T:0.66
Consensus pattern (15 bp):
GGTTATTTTTTAATT
Found at i:20840231 original size:29 final size:30
Alignment explanation
Indices: 20840194--20840261 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 30
20840184 AATTAACAGA
*
20840194 TTTATAATTCAAATATTACCTTAAAATTTT
1 TTTATAATTCAAATATTACATTAAAATTTT
* * *
20840224 TTTA-AATTTATATATTATATTAAAATTTT
1 TTTATAATTCAAATATTACATTAAAATTTT
*
20840253 ATTATAATT
1 TTTATAATT
20840262 TATGGGTCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 24 0.75
30 8 0.25
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (30 bp):
TTTATAATTCAAATATTACATTAAAATTTT
Found at i:20844105 original size:58 final size:58
Alignment explanation
Indices: 20844043--20844158 Score: 196
Period size: 58 Copynumber: 2.0 Consensus size: 58
20844033 CAAATGGAAG
* * *
20844043 ACTTGAGAACTATATTCTACAAAATCATTACCATGCTGCATGAGGCACTCGAAAGACC
1 ACTTGAGAACTATAATCTACAAAATCATTACCATGATGCATAAGGCACTCGAAAGACC
*
20844101 ACTTGAGAACTATAATCTACAAAATCATTACCGTGATGCATAAGGCACTCGAAAGACC
1 ACTTGAGAACTATAATCTACAAAATCATTACCATGATGCATAAGGCACTCGAAAGACC
20844159 CACAATATAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (58 bp):
ACTTGAGAACTATAATCTACAAAATCATTACCATGATGCATAAGGCACTCGAAAGACC
Found at i:20846059 original size:7 final size:7
Alignment explanation
Indices: 20846047--20846107 Score: 72
Period size: 7 Copynumber: 8.7 Consensus size: 7
20846037 GATGAAATAA
20846047 AAATTTT
1 AAATTTT
20846054 AAATTTT
1 AAATTTT
20846061 AAATTTT
1 AAATTTT
*
20846068 AAA--TA
1 AAATTTT
20846073 AAATTTT
1 AAATTTT
*
20846080 AAAATTAT
1 -AAATTTT
20846088 ATAATTTT
1 A-AATTTT
20846096 AAATTTT
1 AAATTTT
20846103 AAATT
1 AAATT
20846108 AGTGTCAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 4 0.09
7 30 0.65
8 12 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (7 bp):
AAATTTT
Found at i:20846071 original size:27 final size:28
Alignment explanation
Indices: 20846041--20846099 Score: 86
Period size: 27 Copynumber: 2.1 Consensus size: 28
20846031 CATTTTGATG
*
20846041 AAATAAAAATTTT-AAATTTTA-AATTTT
1 AAAT-AAAATTTTAAAATTATATAATTTT
20846068 AAATAAAATTTTAAAATTATATAATTTT
1 AAATAAAATTTTAAAATTATATAATTTT
20846096 AAAT
1 AAAT
20846100 TTTAAATTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 8 0.28
27 11 0.38
28 10 0.34
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
AAATAAAATTTTAAAATTATATAATTTT
Found at i:20846091 original size:18 final size:19
Alignment explanation
Indices: 20846054--20846106 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 19
20846044 TAAAAATTTT
*
20846054 AAATTTTAAATTTTAAATA
1 AAATTTTAAATATTAAATA
20846073 AAATTTTAAA-ATT--ATA
1 AAATTTTAAATATTAAATA
* *
20846089 TAATTTTAAATTTTAAAT
1 AAATTTTAAATATTAAAT
20846107 TAGTGTCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 12 0.43
17 2 0.07
18 2 0.07
19 12 0.43
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
AAATTTTAAATATTAAATA
Found at i:20858075 original size:29 final size:30
Alignment explanation
Indices: 20858046--20858117 Score: 83
Period size: 29 Copynumber: 2.3 Consensus size: 30
20858036 CATCTTAATT
20858046 ATATATAAATATAATAATTTTATT-ATATTA
1 ATATATAAA-ATAATAATTTTATTGATATTA
* * *
20858076 AAATATTAAGTAATAATTTTATTGATATAATA
1 ATATATAAAATAATAATTTTATTGATAT--TA
20858108 ATATATAAAA
1 ATATATAAAA
20858118 ATAAAATAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
29 13 0.39
30 11 0.33
32 9 0.27
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (30 bp):
ATATATAAAATAATAATTTTATTGATATTA
Found at i:20859122 original size:19 final size:20
Alignment explanation
Indices: 20859100--20859143 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
20859090 GCTCATATTT
20859100 AAAAA-ATTTA-AAATATTAA
1 AAAAACATTTATAAA-ATTAA
*
20859119 AAAAACATTTATTAAATTAA
1 AAAAACATTTATAAAATTAA
20859139 AAAAA
1 AAAAA
20859144 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 5 0.23
20 15 0.68
21 2 0.09
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAAACATTTATAAAATTAA
Found at i:20859129 original size:29 final size:29
Alignment explanation
Indices: 20859096--20859151 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
20859086 ATGAGCTCAT
* *
20859096 ATTTAAAAAATTTAAAATATTAAAAAAAC
1 ATTTAAAAAATTAAAAAAATTAAAAAAAC
**
20859125 ATTTATTAAATTAAAAAAATTAAAAAA
1 ATTTAAAAAATTAAAAAAATTAAAAAA
20859152 TAAGTGTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (29 bp):
ATTTAAAAAATTAAAAAAATTAAAAAAAC
Found at i:20859329 original size:19 final size:18
Alignment explanation
Indices: 20859302--20859345 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 18
20859292 AGTCTCACAC
20859302 AAAAAATTTA-AAATTCAA
1 AAAAAATTTATAAATT-AA
20859320 AAAAATATTTATTAAATTAA
1 AAAAA-ATTTA-TAAATTAA
20859340 AAAAAA
1 AAAAAA
20859346 ATAAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 5 0.22
19 6 0.26
20 7 0.30
21 5 0.22
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (18 bp):
AAAAAATTTATAAATTAA
Found at i:20859511 original size:13 final size:14
Alignment explanation
Indices: 20859479--20859511 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
20859469 GAAAAAATAT
20859479 TAAAAAACCGAAAA
1 TAAAAAACCGAAAA
20859493 TAAAAAACC-AACAA
1 TAAAAAACCGAA-AA
20859507 TAAAA
1 TAAAA
20859512 TCAAATGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.11
14 16 0.89
ACGTcount: A:0.73, C:0.15, G:0.03, T:0.09
Consensus pattern (14 bp):
TAAAAAACCGAAAA
Found at i:20862126 original size:2 final size:2
Alignment explanation
Indices: 20862119--20862144 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
20862109 TTGGATTTAA
20862119 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
20862145 TCTCTACAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20862826 original size:52 final size:52
Alignment explanation
Indices: 20862748--20862851 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
20862738 TTTAACTAAC
20862748 TAGATTGATCCGAGGCAAATTGATTCTTCTAAACCCACTTTTGTTCATGTGA
1 TAGATTGATCCGAGGCAAATTGATTCTTCTAAACCCACTTTTGTTCATGTGA
20862800 TAGATTGATCCGAGGCAAATTGATTCTTCTAAACCCACTTTTGTTCATGTGA
1 TAGATTGATCCGAGGCAAATTGATTCTTCTAAACCCACTTTTGTTCATGTGA
20862852 ATCTAGAAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (52 bp):
TAGATTGATCCGAGGCAAATTGATTCTTCTAAACCCACTTTTGTTCATGTGA
Found at i:20866292 original size:17 final size:17
Alignment explanation
Indices: 20866270--20866304 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
20866260 TTAAAACACG
20866270 TCTTCAAATATTAAATT
1 TCTTCAAATATTAAATT
20866287 TCTTCAAATATTAAATT
1 TCTTCAAATATTAAATT
20866304 T
1 T
20866305 GATTTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (17 bp):
TCTTCAAATATTAAATT
Found at i:20872121 original size:2 final size:2
Alignment explanation
Indices: 20872114--20872152 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
20872104 ATCCACTTAT
20872114 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20872153 GTTGTCAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:20881798 original size:176 final size:176
Alignment explanation
Indices: 20881497--20881847 Score: 666
Period size: 176 Copynumber: 2.0 Consensus size: 176
20881487 GGTCCAACAT
*
20881497 AAGCATGGAAGAGGAGACTGTTTTATCATGGACCAAATTATCTATCATTCACCAAAAGGAAAAAG
1 AAGCATGGAAGAGGAGACTGTTTTATCATGGACCAAATTATCTATCATTAACCAAAAGGAAAAAG
*
20881562 GCTTTTTCTAGGAGCCTCTTTTTACTTTCTTACAGGTTCAGCTGAAAAAACTTAAAAATCAGAAA
66 GCTTTATCTAGGAGCCTCTTTTTACTTTCTTACAGGTTCAGCTGAAAAAACTTAAAAATCAGAAA
20881627 GATGCAAATAATATTATTGAATCAATGGTCTGAACAGAAAAATCAG
131 GATGCAAATAATATTATTGAATCAATGGTCTGAACAGAAAAATCAG
*
20881673 AAGCATGGAAGAGGAGACTGTTTTATCATGGATCAAATTATCTATCATTAACCAAAAGGAAAAAG
1 AAGCATGGAAGAGGAGACTGTTTTATCATGGACCAAATTATCTATCATTAACCAAAAGGAAAAAG
*
20881738 GCTTTATCTAGGAGCCTCTTTTTACTTTCTTACAGGTTCAGCTGAAAAAACTTGAAAATCAGAAA
66 GCTTTATCTAGGAGCCTCTTTTTACTTTCTTACAGGTTCAGCTGAAAAAACTTAAAAATCAGAAA
20881803 GATGCAAATAATATTATTGAATCAATGGTCTGAACAGAAAAATCA
131 GATGCAAATAATATTATTGAATCAATGGTCTGAACAGAAAAATCA
20881848 CAAATTTCTT
Statistics
Matches: 171, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
176 171 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (176 bp):
AAGCATGGAAGAGGAGACTGTTTTATCATGGACCAAATTATCTATCATTAACCAAAAGGAAAAAG
GCTTTATCTAGGAGCCTCTTTTTACTTTCTTACAGGTTCAGCTGAAAAAACTTAAAAATCAGAAA
GATGCAAATAATATTATTGAATCAATGGTCTGAACAGAAAAATCAG
Found at i:20889907 original size:16 final size:16
Alignment explanation
Indices: 20889883--20889913 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20889873 TACATAAATT
20889883 AATTAATTTAAATTTA
1 AATTAATTTAAATTTA
*
20889899 AATTTATTTAAATTT
1 AATTAATTTAAATTT
20889914 TATTATTTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
AATTAATTTAAATTTA
Found at i:20889921 original size:14 final size:14
Alignment explanation
Indices: 20889888--20889932 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
20889878 AAATTAATTA
*
20889888 ATTTAAATTTAAATTT
1 ATTTAAATTT-TA-TT
20889904 ATTTAAATTTTATT
1 ATTTAAATTTTATT
*
20889918 ATTTAGATTTTATT
1 ATTTAAATTTTATT
20889932 A
1 A
20889933 AGTTATGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 16 0.59
15 1 0.04
16 10 0.37
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (14 bp):
ATTTAAATTTTATT
Found at i:20897424 original size:60 final size:60
Alignment explanation
Indices: 20897331--20897451 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
20897321 ATACTTGTTT
20897331 TGATGTGCATATGATACAACATTGCTCATATATTTCTGTTTTTATGTTCATGTATCTAAA
1 TGATGTGCATATGATACAACATTGCTCATATATTTCTGTTTTTATGTTCATGTATCTAAA
20897391 TGATGTGCATATGATACAACATTGCTCATATATTTCTGTTTTTATGTTCATGTATCTAAA
1 TGATGTGCATATGATACAACATTGCTCATATATTTCTGTTTTTATGTTCATGTATCTAAA
20897451 T
1 T
20897452 CATTGGAGAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.45
Consensus pattern (60 bp):
TGATGTGCATATGATACAACATTGCTCATATATTTCTGTTTTTATGTTCATGTATCTAAA
Found at i:20899376 original size:2 final size:2
Alignment explanation
Indices: 20899369--20899393 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
20899359 ATCAAATAAT
20899369 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
20899394 TTGTCTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20901682 original size:2 final size:2
Alignment explanation
Indices: 20901675--20901701 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
20901665 AAAAATTTAC
20901675 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
20901702 ATACACACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20910871 original size:27 final size:27
Alignment explanation
Indices: 20910841--20910893 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
20910831 CCAATGGCGG
20910841 AGGTGGAGGTGCAGCGCCAAGAGCTCC
1 AGGTGGAGGTGCAGCGCCAAGAGCTCC
* * * *
20910868 AGGTGGAGTTGGAGGGCCAGGAGCTC
1 AGGTGGAGGTGCAGCGCCAAGAGCTC
20910894 GACCTCTAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.45, T:0.13
Consensus pattern (27 bp):
AGGTGGAGGTGCAGCGCCAAGAGCTCC
Found at i:20911158 original size:3 final size:3
Alignment explanation
Indices: 20911150--20911179 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
20911140 CTCGTAAAAA
*
20911150 TGG TGG TGG TGG TGG TGG TGG TTG TGG TGG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG
20911180 AGGAGGAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.63, T:0.37
Consensus pattern (3 bp):
TGG
Found at i:20911753 original size:6 final size:6
Alignment explanation
Indices: 20911699--20911756 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
20911689 CTGTAAGGTT
* * * * * * *
20911699 GAGGGG GTGGTG GAGGTG GAAGGG GAGGGG CAGGGG CAGGGG CAGGGG
1 GAGGGG GAGGGG GAGGGG GAGGGG GAGGGG GAGGGG GAGGGG GAGGGG
20911747 GAGGGG GAGG
1 GAGGGG GAGG
20911757 TGGTGCTGCA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.17, C:0.05, G:0.72, T:0.05
Consensus pattern (6 bp):
GAGGGG
Found at i:20918887 original size:13 final size:13
Alignment explanation
Indices: 20918871--20918895 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20918861 TATTATTGTC
20918871 AAAATTTATAACT
1 AAAATTTATAACT
20918884 AAAATTTATAAC
1 AAAATTTATAAC
20918896 ATTTTAGTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAATTTATAACT
Found at i:20919147 original size:22 final size:22
Alignment explanation
Indices: 20919122--20919164 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
20919112 AATAAATATA
* *
20919122 AAATATATATTTTATTTTTATC
1 AAATATATATATAATTTTTATC
*
20919144 AAATTTATATATAATTTTTAT
1 AAATATATATATAATTTTTAT
20919165 TAAAATTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
AAATATATATATAATTTTTATC
Found at i:20920748 original size:14 final size:14
Alignment explanation
Indices: 20920717--20920759 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
20920707 TAATTAAGAT
20920717 AAAAT-TTATATTA
1 AAAATATTATATTA
*
20920730 AAAATATTATTTTA
1 AAAATATTATATTA
*
20920744 TAAATATTATATTA
1 AAAATATTATATTA
20920758 AA
1 AA
20920760 TTAAAATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
13 5 0.20
14 20 0.80
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AAAATATTATATTA
Found at i:20921849 original size:27 final size:29
Alignment explanation
Indices: 20921809--20921885 Score: 95
Period size: 27 Copynumber: 2.7 Consensus size: 29
20921799 AATTAATAAA
*
20921809 TTTATAATTCAAATATCATA-TAAAATTT
1 TTTATAATTTAAATATCATATTAAAATTT
*
20921837 TTTA-AATTTAAATATCATATTTAATATTT
1 TTTATAATTTAAATATCATA-TTAAAATTT
*
20921866 TATTATAATTTAAAAATCAT
1 T-TTATAATTTAAATATCAT
20921886 TATGTCTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 14 0.33
28 4 0.10
29 8 0.19
30 3 0.07
31 13 0.31
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.49
Consensus pattern (29 bp):
TTTATAATTTAAATATCATATTAAAATTT
Found at i:20923011 original size:13 final size:13
Alignment explanation
Indices: 20922993--20923017 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20922983 AGATTTTATA
20922993 TTATTTTAAAATT
1 TTATTTTAAAATT
20923006 TTATTTTAAAAT
1 TTATTTTAAAAT
20923018 AATATGAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTATTTTAAAATT
Found at i:20933126 original size:14 final size:15
Alignment explanation
Indices: 20933109--20933137 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
20933099 TTTAAATTAT
20933109 GATTTAAAAA-AAAA
1 GATTTAAAAATAAAA
20933123 GATTTAAAAATAAAA
1 GATTTAAAAATAAAA
20933138 AAGTGAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (15 bp):
GATTTAAAAATAAAA
Found at i:20933738 original size:15 final size:15
Alignment explanation
Indices: 20933703--20933746 Score: 72
Period size: 14 Copynumber: 2.9 Consensus size: 15
20933693 TTATATAAAA
20933703 AAATTAAAATATTTT
1 AAATTAAAATATTTT
20933718 -AATTAAAATATTTT
1 AAATTAAAATATTTT
20933732 AAATTAAAATTATTT
1 AAATTAAAA-TATTT
20933747 ATTTTTTAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.52
15 8 0.30
16 5 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AAATTAAAATATTTT
Found at i:20933747 original size:15 final size:14
Alignment explanation
Indices: 20933703--20933747 Score: 63
Period size: 15 Copynumber: 3.1 Consensus size: 14
20933693 TTATATAAAA
20933703 AAATTAAAATATTT
1 AAATTAAAATATTT
*
20933717 TAATTAAAATATTTT
1 AAATTAAAATA-TTT
20933732 AAATTAAAATTATTT
1 AAATTAAAA-TATTT
20933747 A
1 A
20933748 TTTTTTAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 10 0.37
15 15 0.56
16 2 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AAATTAAAATATTT
Found at i:20934089 original size:28 final size:28
Alignment explanation
Indices: 20934058--20934115 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
20934048 TTTATCTTGC
*
20934058 ATATTTAGATA-ATTTTCT-ATAAATATAT
1 ATATTAAGATATATTTT-TAATAAA-ATAT
*
20934086 ATATTAATATATATTTTTAATAAAATAT
1 ATATTAAGATATATTTTTAATAAAATAT
20934114 AT
1 AT
20934116 TAATTTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (28 bp):
ATATTAAGATATATTTTTAATAAAATAT
Found at i:20934666 original size:13 final size:12
Alignment explanation
Indices: 20934635--20934681 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 12
20934625 AATTCATATT
*
20934635 TTTTATATCATA
1 TTTTATATTATA
20934647 -TTTATATTATA
1 TTTTATATTATA
20934658 TTATTATATTATA
1 TT-TTATATTATA
*
20934671 TTTTAAATTAT
1 TTTTATATTAT
20934682 CATATTTAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
11 10 0.32
12 9 0.29
13 12 0.39
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTTATATTATA
Found at i:20936338 original size:15 final size:16
Alignment explanation
Indices: 20936320--20936349 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
20936310 AAACTTGTTT
20936320 AATTAAAA-TATTTAA
1 AATTAAAATTATTTAA
20936335 AATTAAAATTATTTA
1 AATTAAAATTATTTA
20936350 TTTTTAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATTAAAATTATTTAA
Found at i:20936680 original size:11 final size:11
Alignment explanation
Indices: 20936664--20936769 Score: 54
Period size: 11 Copynumber: 8.9 Consensus size: 11
20936654 ATATTAAAAT
20936664 TATTATATTTA
1 TATTATATTTA
20936675 TATTATACTTTA
1 TATTATA-TTTA
* *
20936687 TATAAAAATTATA
1 TAT-TATATT-TA
**
20936700 TATTATAATTCG
1 TATTAT-ATTTA
20936712 TATTGACATAATTTA
1 TATT---AT-ATTTA
20936727 TATT-T-TTTA
1 TATTATATTTA
* *
20936736 TATCATATTCA
1 TATTATATTTA
20936747 TATTATATTATTA
1 TATTATA-T-TTA
20936760 TATTATATTT
1 TATTATATTT
20936770 TAGATTATCA
Statistics
Matches: 72, Mismatches: 12, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
9 7 0.10
10 1 0.01
11 19 0.26
12 16 0.22
13 19 0.26
15 10 0.14
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (11 bp):
TATTATATTTA
Found at i:20937149 original size:28 final size:28
Alignment explanation
Indices: 20937118--20937177 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
20937108 CTTTAAAAAA
20937118 TAACATAAAAAATTTAAAATTTAAATTC
1 TAACATAAAAAATTTAAAATTTAAATTC
** * *
20937146 TAACATTTATAATTTAACATTTAAATTC
1 TAACATAAAAAATTTAAAATTTAAATTC
20937174 -AACA
1 TAACA
20937178 ATCTACTTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 4 0.14
28 24 0.86
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (28 bp):
TAACATAAAAAATTTAAAATTTAAATTC
Found at i:20937163 original size:14 final size:13
Alignment explanation
Indices: 20937127--20937177 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
20937117 ATAACATAAA
*
20937127 AAATTTAAAATTT
1 AAATTTAACATTT
20937140 AAATTCTAACATTT
1 AAATT-TAACATTT
20937154 ATAATTTAACATTT
1 A-AATTTAACATTT
*
20937168 AAATTCAACA
1 AAATTTAACA
20937178 ATCTACTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 13 0.38
14 17 0.50
15 4 0.12
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (13 bp):
AAATTTAACATTT
Found at i:20942396 original size:26 final size:26
Alignment explanation
Indices: 20942367--20942423 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
20942357 CCTTGAAATA
* * * *
20942367 TAAAAATTCTCACCATCTTCAACTTT
1 TAAAAAATCACACCACCTTCAACTTG
*
20942393 TAAAAAATCACACTACCTTCAACTTG
1 TAAAAAATCACACCACCTTCAACTTG
20942419 TAAAA
1 TAAAA
20942424 GAGCTGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.32
Consensus pattern (26 bp):
TAAAAAATCACACCACCTTCAACTTG
Found at i:20945522 original size:19 final size:20
Alignment explanation
Indices: 20945498--20945535 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
20945488 ATAAATAATA
20945498 AAATAAAAAA-TTTAAAAAT
1 AAATAAAAAACTTTAAAAAT
20945517 AAATAAAAAACTTTAAAAA
1 AAATAAAAAACTTTAAAAA
20945536 ATACAATTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (20 bp):
AAATAAAAAACTTTAAAAAT
Found at i:20945809 original size:20 final size:20
Alignment explanation
Indices: 20945774--20945818 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
20945764 CCATAAATTA
*
20945774 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTAATTTTT-AAT
20945795 ATAAAA-ATTAATTTTTAAT
1 ATAAAATATTAATTTTTAAT
20945814 ATAAA
1 ATAAA
20945819 TATAAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.35
20 9 0.39
21 6 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAAAATATTAATTTTTAAT
Found at i:20945827 original size:20 final size:20
Alignment explanation
Indices: 20945786--20945824 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
20945776 AAAATATTAT
*
20945786 TTTTTAAATATAAAAATTAA
1 TTTTTAAATATAAAAATAAA
*
20945806 TTTTT-AATATAAATATAAA
1 TTTTTAAATATAAAAATAAA
20945825 ATTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTTTAAATATAAAAATAAA
Found at i:20945835 original size:16 final size:17
Alignment explanation
Indices: 20945809--20945869 Score: 74
Period size: 16 Copynumber: 3.6 Consensus size: 17
20945799 AAATTAATTT
20945809 TTAATATAAATATAAAA
1 TTAATATAAATATAAAA
20945826 TTAA-ATAAATATAAAA
1 TTAATATAAATATAAAA
*
20945842 -AAATATATAACTATAAAA
1 TTAATATA-AA-TATAAAA
20945860 TTAA-ATAAAT
1 TTAATATAAAT
20945870 GTTTTAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
15 2 0.05
16 16 0.42
17 8 0.21
18 10 0.26
19 2 0.05
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (17 bp):
TTAATATAAATATAAAA
Found at i:20946898 original size:64 final size:64
Alignment explanation
Indices: 20946829--20946958 Score: 224
Period size: 64 Copynumber: 2.0 Consensus size: 64
20946819 ATCATTATCA
*
20946829 TTATTTTCGGCCTTCATAAATTTTAAATGCTAAATTTAGAGTTGATTGAATGATGACTTAAAGT
1 TTATTTTCGACCTTCATAAATTTTAAATGCTAAATTTAGAGTTGATTGAATGATGACTTAAAGT
* * *
20946893 TTATTTTCGACCTTCGTAAATTTTAAATGTTAAATTTAGAGTTGATTGAATGATGACTTATAGT
1 TTATTTTCGACCTTCATAAATTTTAAATGCTAAATTTAGAGTTGATTGAATGATGACTTAAAGT
20946957 TT
1 TT
20946959 GATGGTAATA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (64 bp):
TTATTTTCGACCTTCATAAATTTTAAATGCTAAATTTAGAGTTGATTGAATGATGACTTAAAGT
Found at i:20947108 original size:17 final size:16
Alignment explanation
Indices: 20947081--20947135 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
20947071 TTGTTTAATG
20947081 TAAATATAAAATTAAA
1 TAAATATAAAATTAAA
* **
20947097 TAAATATAAAAAATATT
1 TAAATAT-AAAATTAAA
*
20947114 TAAATATGAAATTAAA
1 TAAATATAAAATTAAA
20947130 TAAATA
1 TAAATA
20947136 ATTATATATA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
16 18 0.58
17 13 0.42
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (16 bp):
TAAATATAAAATTAAA
Found at i:20947134 original size:24 final size:23
Alignment explanation
Indices: 20947081--20947153 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 23
20947071 TTGTTTAATG
20947081 TAAATATAA-AATT-AA-ATAAAT
1 TAAATA-AATAATTAAATATAAAT
*
20947102 ATAAA-AAATATTTAAATATGAAAT
1 -TAAATAAATAATTAAATAT-AAAT
* *
20947126 TAAATAAATAATTATATATATAT
1 TAAATAAATAATTAAATATAAAT
20947149 TAAAT
1 TAAAT
20947154 CAGGTTGAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
20 2 0.05
21 4 0.10
22 6 0.14
23 14 0.33
24 16 0.38
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (23 bp):
TAAATAAATAATTAAATATAAAT
Found at i:20950193 original size:17 final size:17
Alignment explanation
Indices: 20950152--20950195 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
20950142 GTTTAGTTTC
20950152 TTTATTTTTTATTATAA
1 TTTATTTTTTATTATAA
* *
20950169 TTTGTTTTCTT-TTATAT
1 TTTATTTT-TTATTATAA
20950186 TTTATTTTTT
1 TTTATTTTTT
20950196 CAAACTAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 2 0.09
17 19 0.83
18 2 0.09
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTATTTTTTATTATAA
Found at i:20950327 original size:14 final size:14
Alignment explanation
Indices: 20950302--20950342 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
20950292 AAAGTTTTGA
*
20950302 TTAATTTTTTTATC
1 TTAATATTTTTATC
**
20950316 TTTTTATTTTTATC
1 TTAATATTTTTATC
20950330 TTAATATTTTTAT
1 TTAATATTTTTAT
20950343 TAAAAAAATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (14 bp):
TTAATATTTTTATC
Found at i:20961043 original size:47 final size:47
Alignment explanation
Indices: 20960989--20961094 Score: 178
Period size: 47 Copynumber: 2.3 Consensus size: 47
20960979 AGGCTGCCTC
*
20960989 GAAAGCTCTTCTCACCAAAGGCTTTACAACTTTTTAAAAGTTGAAAG-
1 GAAAGCTCTTCTCACCAAAGGCTTCACAACTTTTTAAAAGTT-AAAGT
*
20961036 GAAAGCTCTTCTCACCAAAGGCTTCACAACTTTTTGAAAGTTAAAGT
1 GAAAGCTCTTCTCACCAAAGGCTTCACAACTTTTTAAAAGTTAAAGT
20961083 GAAAGCTCTTCT
1 GAAAGCTCTTCT
20961095 TGCAAAAGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
46 4 0.07
47 52 0.93
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (47 bp):
GAAAGCTCTTCTCACCAAAGGCTTCACAACTTTTTAAAAGTTAAAGT
Found at i:20961111 original size:47 final size:47
Alignment explanation
Indices: 20960989--20961130 Score: 148
Period size: 47 Copynumber: 3.1 Consensus size: 47
20960979 AGGCTGCCTC
* * ** *
20960989 GAAAGCTCTTCTCACCAAAGGCTTTACAACTTTTTAAAAGTTGAAAG-
1 GAAAGCTCTTCTCACAAAAGACTCCACAACTTTTTGAAAGTT-AAAGT
* * *
20961036 GAAAGCTCTTCTCACCAAAGGCTTCACAACTTTTTGAAAGTTAAAGT
1 GAAAGCTCTTCTCACAAAAGACTCCACAACTTTTTGAAAGTTAAAGT
** *
20961083 GAAAGCTCTTCTTGCAAAAGACTCCACAAC--TTTGAAAG-TAAATT
1 GAAAGCTCTTCTCACAAAAGACTCCACAACTTTTTGAAAGTTAAAGT
20961127 GAAA
1 GAAA
20961131 TGAAAACTTC
Statistics
Matches: 86, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
44 9 0.10
45 8 0.09
46 4 0.05
47 65 0.76
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (47 bp):
GAAAGCTCTTCTCACAAAAGACTCCACAACTTTTTGAAAGTTAAAGT
Found at i:20961181 original size:43 final size:43
Alignment explanation
Indices: 20961128--20961231 Score: 113
Period size: 43 Copynumber: 2.4 Consensus size: 43
20961118 AAGTAAATTG
* * *
20961128 AAATGAAAACTTCTCTCACTACAA-GTTTTATAAC-TTAAAATAA
1 AAATGAAAACTCCTCTCACCA-AAGGTTCTATAACTTTAAAA-AA
* * *
20961171 AAATAAAAACTCCTTTCACCAAAGGTTCTATAACTTTAAAAAT
1 AAATGAAAACTCCTCTCACCAAAGGTTCTATAACTTTAAAAAA
*
20961214 AAATGAAAACTCTTCTCA
1 AAATGAAAACTCCTCTCA
20961232 TAAGAGGTTC
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
42 2 0.04
43 42 0.84
44 6 0.12
ACGTcount: A:0.46, C:0.18, G:0.05, T:0.31
Consensus pattern (43 bp):
AAATGAAAACTCCTCTCACCAAAGGTTCTATAACTTTAAAAAA
Found at i:20964102 original size:33 final size:33
Alignment explanation
Indices: 20964043--20964133 Score: 112
Period size: 33 Copynumber: 2.8 Consensus size: 33
20964033 TAACCTAAAT
* * **
20964043 TGAACC-AAGTCTAAAAATGATTTGACTTGGAC
1 TGAACCGAAGTTTGAAAATGAAATGACTTGGAC
* *
20964075 TGAACCGAAGTTTGAAAATTAAATGACTTGGAT
1 TGAACCGAAGTTTGAAAATGAAATGACTTGGAC
*
20964108 TGAACTGAAGTTTGAAAATGAAATGA
1 TGAACCGAAGTTTGAAAATGAAATGA
20964134 TCGGGATTGA
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
32 6 0.12
33 44 0.88
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.29
Consensus pattern (33 bp):
TGAACCGAAGTTTGAAAATGAAATGACTTGGAC
Found at i:20964218 original size:34 final size:35
Alignment explanation
Indices: 20964089--20964264 Score: 138
Period size: 33 Copynumber: 5.3 Consensus size: 35
20964079 CCGAAGTTTG
* * **
20964089 AAAATTAAATGACTT-GGATTGAA-CT-GAAGTTTG
1 AAAATGAAATGA-TTGGGATTGAATCTACAAGTTCA
* * ** *
20964122 AAAATGAAATGATCGGGATTGAGT-TATGAGTTAA
1 AAAATGAAATGATTGGGATTGAATCTACAAGTTCA
* *
20964156 AAAATGAAATGACT-GGATT-AAACTACAAGTTCA
1 AAAATGAAATGATTGGGATTGAATCTACAAGTTCA
* *
20964189 GAAATGAAATGATTGGGATTGAATC-ACAAGTT-G
1 AAAATGAAATGATTGGGATTGAATCTACAAGTTCA
* *
20964222 AAAATGAAATGATTGTGAATGAA-CTACAAG-TCA
1 AAAATGAAATGATTGGGATTGAATCTACAAGTTCA
20964255 AAAATGAAAT
1 AAAATGAAAT
20964265 AACAATGGGG
Statistics
Matches: 113, Mismatches: 22, Indels: 16
0.75 0.15 0.11
Matches are distributed among these distances:
32 4 0.04
33 78 0.69
34 28 0.25
35 3 0.03
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.27
Consensus pattern (35 bp):
AAAATGAAATGATTGGGATTGAATCTACAAGTTCA
Found at i:20964247 original size:67 final size:66
Alignment explanation
Indices: 20964122--20964264 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 66
20964112 CTGAAGTTTG
* * ** *
20964122 AAAATGAAATGATCGGGATTGAGTTATGAGTTAAAAAATGAAATGACTGGATTAAACTACAAGTT
1 AAAATGAAATGATCGGGATTGAATCACAAGTTAAAAAATGAAATGACTGGAATAAACTACAAG-T
20964187 CA
65 CA
* * * * *
20964189 GAAATGAAATGATTGGGATTGAATCACAAGTT-GAAAATGAAATGATTGTGAATGAACTACAAGT
1 AAAATGAAATGATCGGGATTGAATCACAAGTTAAAAAATGAAATGACTG-GAATAAACTACAAGT
20964253 CA
65 CA
20964255 AAAATGAAAT
1 AAAATGAAAT
20964265 AACAATGGGG
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
66 26 0.41
67 38 0.59
ACGTcount: A:0.46, C:0.07, G:0.21, T:0.26
Consensus pattern (66 bp):
AAAATGAAATGATCGGGATTGAATCACAAGTTAAAAAATGAAATGACTGGAATAAACTACAAGTC
A
Found at i:20964334 original size:33 final size:32
Alignment explanation
Indices: 20964280--20964370 Score: 112
Period size: 33 Copynumber: 2.8 Consensus size: 32
20964270 TGGGGACTGG
20964280 ACCACAAGTCAAAAATGAAATGACTAAGACTAA
1 ACCACAAGTCAAAAATGAAATGACTAA-ACTAA
* * * *
20964313 ACCATAAGTTAAAAA-GAAAATGACCGAAACTGA
1 ACCACAAGTCAAAAATG-AAATGA-CTAAACTAA
20964346 ACCACAAGTCAAAAATGAAATGACT
1 ACCACAAGTCAAAAATGAAATGACT
20964371 GAGATTGAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
32 2 0.04
33 42 0.88
34 4 0.08
ACGTcount: A:0.54, C:0.18, G:0.13, T:0.15
Consensus pattern (32 bp):
ACCACAAGTCAAAAATGAAATGACTAAACTAA
Found at i:20964395 original size:66 final size:65
Alignment explanation
Indices: 20964275--20964433 Score: 160
Period size: 66 Copynumber: 2.4 Consensus size: 65
20964265 AACAATGGGG
* * *
20964275 ACTGGACCACAAGTCAAAAATGAAATGACTAAGACTAAACCATAAGTTAAAAAGAAA-ATGACCG
1 ACTGAACCACAAGTCAAAAATGAAATGACTAAGACTAAACCAGAAGTGAAAAAGAAATAT--CCG
20964339 AA
64 AA
* * * * *
20964341 ACTGAACCACAAGTCAAAAATGAAATGACTGAGATTGAATC-GAAGTCGAGAAAGAAATATCCGA
1 ACTGAACCACAAGTCAAAAATGAAATGACTAAGACTAAACCAGAAGT-GAAAAAGAAATATCCGA
*
20964405 G
65 A
* * * *
20964406 ACTAAATCACCAGTTAAAAATGAAATGA
1 ACTGAACCACAAGTCAAAAATGAAATGA
20964434 TTGGGGTTGT
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
65 32 0.41
66 44 0.56
67 2 0.03
ACGTcount: A:0.50, C:0.16, G:0.17, T:0.17
Consensus pattern (65 bp):
ACTGAACCACAAGTCAAAAATGAAATGACTAAGACTAAACCAGAAGTGAAAAAGAAATATCCGAA
Found at i:20965871 original size:21 final size:21
Alignment explanation
Indices: 20965845--20965886 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
20965835 GGAAGTAAAC
*
20965845 GCAGCATGCAAAAATGCAAAT
1 GCAGCATACAAAAATGCAAAT
* *
20965866 GCAGCATACAGAGATGCAAAT
1 GCAGCATACAAAAATGCAAAT
20965887 ATAGATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.19, G:0.21, T:0.14
Consensus pattern (21 bp):
GCAGCATACAAAAATGCAAAT
Found at i:20970734 original size:16 final size:16
Alignment explanation
Indices: 20970713--20970752 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
20970703 TCAAACTTTC
20970713 TTTTCTTTCCCTATTT
1 TTTTCTTTCCCTATTT
* *
20970729 TTTTCTCTCCTTATTT
1 TTTTCTTTCCCTATTT
20970745 TTCTTCTT
1 TT-TTCTT
20970753 CTCTTTCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.05, C:0.25, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTCTTTCCCTATTT
Found at i:20970787 original size:12 final size:12
Alignment explanation
Indices: 20970710--20970792 Score: 55
Period size: 12 Copynumber: 6.8 Consensus size: 12
20970700 TTTTCAAACT
20970710 TTCTTTTCTTTCC
1 TTCTTTT-TTTCC
* *
20970723 CTATTTTTTTCTC
1 TTCTTTTTTTC-C
*
20970736 TCCTTATTTTT-C
1 TTCTT-TTTTTCC
* *
20970748 TTCTTCTCTTTCAT
1 TTCTT-TTTTTC-C
20970762 TTCTTTTTTT--
1 TTCTTTTTTTCC
20970772 TTCTTTTTTTCC
1 TTCTTTTTTTCC
20970784 TTCTTTTTT
1 TTCTTTTTT
20970793 CCTATGTCGT
Statistics
Matches: 54, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
10 10 0.19
12 22 0.41
13 12 0.22
14 10 0.19
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.73
Consensus pattern (12 bp):
TTCTTTTTTTCC
Found at i:20970933 original size:25 final size:24
Alignment explanation
Indices: 20970904--20970962 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
20970894 ATCGACCTTC
* *
20970904 TTTTCTCTTTCTTTTTTTCTCATTT
1 TTTTCTCTTTCTTCTTATCT-ATTT
* *
20970929 TTTTCTTTTTCTTCTTATCTTTTT
1 TTTTCTCTTTCTTCTTATCTATTT
20970953 TTTTCTCTTT
1 TTTTCTCTTT
20970963 TTCCCAATTG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 12 0.41
25 17 0.59
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTCTCTTTCTTCTTATCTATTT
Found at i:20970943 original size:20 final size:20
Alignment explanation
Indices: 20970911--20970953 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
20970901 TTCTTTTCTC
20970911 TTTCTTTTTTTCTCAT-TTT
1 TTTCTTTTTTTCTCATCTTT
*
20970930 TTTCTTTTTCTTCTTATCTTT
1 TTTCTTTTT-TTCTCATCTTT
20970951 TTT
1 TTT
20970954 TTTCTCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 6 0.29
21 6 0.29
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTCTTTTTTTCTCATCTTT
Found at i:20971409 original size:3 final size:3
Alignment explanation
Indices: 20971401--20971436 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
20971391 TAATTAGTAA
20971401 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
20971437 TGTATCCAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:20978784 original size:13 final size:13
Alignment explanation
Indices: 20978765--20978795 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
20978755 TAATAATTTT
20978765 AAATATGATATAA
1 AAATATGATATAA
*
20978778 TAATATGATATAA
1 AAATATGATATAA
20978791 AAATA
1 AAATA
20978796 ATACGATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (13 bp):
AAATATGATATAA
Found at i:20984891 original size:22 final size:22
Alignment explanation
Indices: 20984866--20984959 Score: 86
Period size: 21 Copynumber: 4.4 Consensus size: 22
20984856 AAAATTCATA
*
20984866 ATTGAAAGTTTTCGGGATTCAC
1 ATTGAAAGTTTTCGAGATTCAC
* * *
20984888 ATTGAAAATTTTAGAGATTCAT
1 ATTGAAAGTTTTCGAGATTCAC
*
20984910 ATTGAAAG-TTTCAAGATTCAC
1 ATTGAAAGTTTTCGAGATTCAC
* *
20984931 ATAGAAA-TGTTT-GAAATTCAC
1 ATTGAAAGT-TTTCGAGATTCAC
*
20984952 ACTGAAAG
1 ATTGAAAG
20984960 GTTCTTGAAA
Statistics
Matches: 56, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
21 28 0.50
22 28 0.50
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (22 bp):
ATTGAAAGTTTTCGAGATTCAC
Found at i:20984928 original size:21 final size:21
Alignment explanation
Indices: 20984837--20984929 Score: 71
Period size: 22 Copynumber: 4.2 Consensus size: 21
20984827 TCATTCAAAC
* *
20984837 ATTCATATATGAAAAG-TTAAAA
1 ATTCATAT-TG-AAAGTTTCAAG
**
20984859 ATTCATAATTGAAAGTTTTCGGG
1 ATTCAT-ATTGAAAG-TTTCAAG
* * *
20984882 ATTCACATTGAAAATTTTAGAG
1 ATTCATATTGAAAGTTTCA-AG
20984904 ATTCATATTGAAAGTTTCAAG
1 ATTCATATTGAAAGTTTCAAG
20984925 ATTCA
1 ATTCA
20984930 CATAGAAATG
Statistics
Matches: 55, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
21 14 0.25
22 32 0.58
23 9 0.16
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.37
Consensus pattern (21 bp):
ATTCATATTGAAAGTTTCAAG
Found at i:20984937 original size:21 final size:21
Alignment explanation
Indices: 20984866--20984959 Score: 82
Period size: 22 Copynumber: 4.4 Consensus size: 21
20984856 AAAATTCATA
**
20984866 ATTGAAAGTTTTCGGGATTCAC
1 ATTGAAAG-TTTCAAGATTCAC
* * *
20984888 ATTGAAAATTTTAGAGATTCAT
1 ATTGAAAGTTTCA-AGATTCAC
20984910 ATTGAAAGTTTCAAGATTCAC
1 ATTGAAAGTTTCAAGATTCAC
* *
20984931 ATAGAAATGTTTGAA-ATTCAC
1 ATTGAAA-GTTTCAAGATTCAC
*
20984952 ACTGAAAG
1 ATTGAAAG
20984960 GTTCTTGAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
20 1 0.02
21 27 0.47
22 30 0.52
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (21 bp):
ATTGAAAGTTTCAAGATTCAC
Found at i:20985449 original size:37 final size:37
Alignment explanation
Indices: 20985408--20985480 Score: 94
Period size: 39 Copynumber: 1.9 Consensus size: 37
20985398 TTTGAAAATT
* *
20985408 TAAAA-TTTTTCTTAAAATTTATTTCTCAACCAAAACC
1 TAAAATTTTTTCTAAAAAATT-TTTCTCAACCAAAACC
20985445 TAAAATCTTTTTTCTAAAAAATTTTTCTCAACCAAA
1 TAAAA--TTTTTTCTAAAAAATTTTTCTCAACCAAA
20985481 GATAAAAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
37 5 0.16
39 13 0.42
40 13 0.42
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (37 bp):
TAAAATTTTTTCTAAAAAATTTTTCTCAACCAAAACC
Found at i:20992499 original size:53 final size:53
Alignment explanation
Indices: 20992416--20992517 Score: 186
Period size: 53 Copynumber: 1.9 Consensus size: 53
20992406 CCCACTATGG
* *
20992416 AAAAGTTACCTGCAAAATATCAGCCCCTGGGTAATGTTCTTAACATGAAGTGT
1 AAAAGTTACCTGCAAAATATCAGCCACTGGGTAAAGTTCTTAACATGAAGTGT
20992469 AAAAGTTACCTGCAAAATATCAGCCACTGGGTAAAGTTCTTAACATGAA
1 AAAAGTTACCTGCAAAATATCAGCCACTGGGTAAAGTTCTTAACATGAA
20992518 ATTCTAGTCT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (53 bp):
AAAAGTTACCTGCAAAATATCAGCCACTGGGTAAAGTTCTTAACATGAAGTGT
Found at i:20995967 original size:19 final size:20
Alignment explanation
Indices: 20995945--20995996 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
20995935 AAAATTAATT
*
20995945 TAAAGATAAAATTTTA-AAA
1 TAAAGATAAAATTTAATAAA
* *
20995964 TAAAGTTAATATTTAATAAA
1 TAAAGATAAAATTTAATAAA
*
20995984 TATGAGATAAAAT
1 TA-AAGATAAAAT
20995997 CAATTAATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 13 0.52
20 5 0.20
21 7 0.28
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (20 bp):
TAAAGATAAAATTTAATAAA
Found at i:20996747 original size:9 final size:9
Alignment explanation
Indices: 20996733--20996771 Score: 78
Period size: 9 Copynumber: 4.3 Consensus size: 9
20996723 AACCTAATAT
20996733 AAAATTTTA
1 AAAATTTTA
20996742 AAAATTTTA
1 AAAATTTTA
20996751 AAAATTTTA
1 AAAATTTTA
20996760 AAAATTTTA
1 AAAATTTTA
20996769 AAA
1 AAA
20996772 CTTAACATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
AAAATTTTA
Found at i:20997303 original size:20 final size:20
Alignment explanation
Indices: 20997274--20997311 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
20997264 ATTGATTCAA
* *
20997274 TTGATTAAAATTTTTTATCT
1 TTGATGAAAAATTTTTATCT
20997294 TTGATGAAAAATTTTTAT
1 TTGATGAAAAATTTTTAT
20997312 ATTCGAATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (20 bp):
TTGATGAAAAATTTTTATCT
Found at i:21000381 original size:2 final size:2
Alignment explanation
Indices: 21000374--21000403 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
21000364 CTACCTTCTT
21000374 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21000404 ATTGTATGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:21008890 original size:35 final size:35
Alignment explanation
Indices: 21008848--21008919 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
21008838 GGCGGTGAAG
*
21008848 AAGCACAAAATCAGCGAAAGAGATGCAAACTGTGA
1 AAGCACAAAATCAGCGAAAGAGATGCAAACGGTGA
*
21008883 AAGCACAAAATCAGTGAAAGAGATGCAAACGGTGA
1 AAGCACAAAATCAGCGAAAGAGATGCAAACGGTGA
21008918 AA
1 AA
21008920 TACTTGGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.50, C:0.15, G:0.24, T:0.11
Consensus pattern (35 bp):
AAGCACAAAATCAGCGAAAGAGATGCAAACGGTGA
Found at i:21010962 original size:28 final size:28
Alignment explanation
Indices: 21010930--21010990 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
21010920 TCTCTAAAAA
*
21010930 CTTGCACGGT-ATCTGTAAAGCTAACATG
1 CTTGC-CGGTCATCTGCAAAGCTAACATG
** *
21010958 CTTGCCTTTCTTCTGCAAAGCTAACATG
1 CTTGCCGGTCATCTGCAAAGCTAACATG
21010986 CTTGC
1 CTTGC
21010991 TTTTCTTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 2 0.07
28 26 0.93
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (28 bp):
CTTGCCGGTCATCTGCAAAGCTAACATG
Found at i:21010995 original size:28 final size:28
Alignment explanation
Indices: 21010941--21010999 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
21010931 TTGCACGGTA
*
21010941 TCTGTAAAGCTAACATGCTTGCCTTTCT
1 TCTGCAAAGCTAACATGCTTGCCTTTCT
*
21010969 TCTGCAAAGCTAACATGCTTGCTTTTCT
1 TCTGCAAAGCTAACATGCTTGCCTTTCT
21010997 TCT
1 TCT
21011000 TTTCCTTCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (28 bp):
TCTGCAAAGCTAACATGCTTGCCTTTCT
Found at i:21015065 original size:17 final size:18
Alignment explanation
Indices: 21015028--21015066 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
21015018 CAATCTTGGA
*
21015028 TTTTTAATCCAAGTCCAC
1 TTTTTAAACCAAGTCCAC
*
21015046 TTTTTAAACCAATTCC-C
1 TTTTTAAACCAAGTCCAC
21015063 TTTT
1 TTTT
21015067 ACAATCCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.46
Consensus pattern (18 bp):
TTTTTAAACCAAGTCCAC
Found at i:21017397 original size:12 final size:11
Alignment explanation
Indices: 21017347--21017397 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
21017337 TATATTTATG
21017347 TATTT-ATTATT
1 TATTTAATT-TT
21017358 TATTTAATTTT
1 TATTTAATTTT
*
21017369 AATTTTAATTTT
1 TA-TTTAATTTT
*
21017381 AATTTAATTTTT
1 TATTTAA-TTTT
21017393 TATTT
1 TATTT
21017398 TTATGGGCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
11 13 0.37
12 22 0.63
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TATTTAATTTT
Found at i:21017401 original size:6 final size:6
Alignment explanation
Indices: 21017360--21017391 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
21017350 TTATTATTTA
21017360 TTTAAT TTTAAT TTTAAT TTTAA- TTTAAT TTT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTT
21017392 TTATTTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTAAT
Found at i:21018836 original size:171 final size:171
Alignment explanation
Indices: 21018497--21018892 Score: 650
Period size: 172 Copynumber: 2.3 Consensus size: 171
21018487 ATTAAATATA
* * *
21018497 AATTACCCAAAGATGAGATTCTTAGAAATTTCAAATGGTAAATTTTTAAGAAATCTCTAAGTGAG
1 AATTATCCAATGATGAGATTCTTAGAAATTTCAAATGGTAAATTTCTAAGAAATCTCTAAGTGAG
21018562 AAATTTCTCTAAATTTGTCCCAAATGGTGGAATAATTTAGATGAAATTTCAATAAAAGTAATTGT
66 AAATTTCTCTAAATTTGTCCCAAATGGTGGAATAATTTAGATGAAATTTCAATAAAAGTAATTGT
* *
21018627 ATTCTTTTCCAAATATAAAAATTTGGTTGAAAATATTTGAT
131 ATTCTTTTCCAAATATAAAAATTTGGTTAAAAATATTTGAC
21018668 AATTATCCAATGATGAGATTCTTAGAAATTTCAAATGGTAACATTTCTAAGAAATCTCTAAGTGA
1 AATTATCCAATGATGAGATTCTTAGAAATTTCAAATGGTAA-ATTTCTAAGAAATCTCTAAGTGA
21018733 GAAATTTCTCTAAATTTGTCCCAAATGGTGGAATAATTTAGATGAAATTTCAATAAAAGTAATTG
65 GAAATTTCTCTAAATTTGTCCCAAATGGTGGAATAATTTAGATGAAATTTCAATAAAAGTAATTG
**
21018798 TATTCTTTTCCAAATA-AAAGTTTTGGTTAAAAATATTTGAC
130 TATTCTTTTCCAAATATAAAAATTTGGTTAAAAATATTTGAC
** * * * * *
21018839 AATTATTGAATGATGGGACTCTTAGAAATTTTAAATGATAAATTCCTAAGAAAT
1 AATTATCCAATGATGAGATTCTTAGAAATTTCAAATGGTAAATTTCTAAGAAAT
21018893 TTCTCACTAA
Statistics
Matches: 210, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
170 12 0.06
171 95 0.45
172 103 0.49
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.37
Consensus pattern (171 bp):
AATTATCCAATGATGAGATTCTTAGAAATTTCAAATGGTAAATTTCTAAGAAATCTCTAAGTGAG
AAATTTCTCTAAATTTGTCCCAAATGGTGGAATAATTTAGATGAAATTTCAATAAAAGTAATTGT
ATTCTTTTCCAAATATAAAAATTTGGTTAAAAATATTTGAC
Found at i:21023112 original size:21 final size:20
Alignment explanation
Indices: 21023086--21023125 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
21023076 AAAGATATCA
*
21023086 ATAATGAACGAAAGAAAAGAT
1 ATAATGAAAGAAA-AAAAGAT
21023107 ATAATGAAAGAAAAAAAGA
1 ATAATGAAAGAAAAAAAGA
21023126 AAAAAATGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.68, C:0.03, G:0.17, T:0.12
Consensus pattern (20 bp):
ATAATGAAAGAAAAAAAGAT
Found at i:21023126 original size:8 final size:8
Alignment explanation
Indices: 21023113--21023193 Score: 60
Period size: 8 Copynumber: 10.1 Consensus size: 8
21023103 AGATATAATG
21023113 AAAGAAAA
1 AAAGAAAA
21023121 AAAGAAAA
1 AAAGAAAA
*
21023129 AAATGGAAA
1 AAA-GAAAA
*
21023138 AATGAAAA
1 AAAGAAAA
*
21023146 AATGAAAA
1 AAAGAAAA
*
21023154 AGAAG-GAA
1 A-AAGAAAA
21023162 AAA-AAAA
1 AAAGAAAA
**
21023169 AGGGAAAGA
1 AAAGAAA-A
21023178 AAA-AAAA
1 AAAGAAAA
21023185 AAAGAAAA
1 AAAGAAAA
21023193 A
1 A
21023194 TGAAAGAATG
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
7 9 0.16
8 38 0.67
9 10 0.18
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (8 bp):
AAAGAAAA
Found at i:21023144 original size:25 final size:25
Alignment explanation
Indices: 21023116--21023164 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
21023106 TATAATGAAA
21023116 GAAAAAAAGAAAAA-AATGGAAAAAT
1 GAAAAAAAGAAAAAGAA-GGAAAAAT
*
21023141 GAAAAAATGAAAAAGAAGGAAAAA
1 GAAAAAAAGAAAAAGAAGGAAAAA
21023165 AAAAAGGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (25 bp):
GAAAAAAAGAAAAAGAAGGAAAAAT
Found at i:21023186 original size:23 final size:22
Alignment explanation
Indices: 21023160--21023211 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
21023150 AAAAAGAAGG
*
21023160 AAAAAAAAAAGGGAAAGAAAAA
1 AAAAAAAAAAAGGAAAGAAAAA
* **
21023182 AAAAAAGAAAAATGAAAGAATGA
1 AAAAAA-AAAAAGGAAAGAAAAA
21023205 AAAAAAA
1 AAAAAAA
21023212 TGTAAAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (22 bp):
AAAAAAAAAAAGGAAAGAAAAA
Found at i:21024479 original size:16 final size:19
Alignment explanation
Indices: 21024458--21024506 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 19
21024448 TTTTATGTAT
21024458 TGTATTATTTATT-AT-TA
1 TGTATTATTTATTAATATA
*
21024475 T-TATTATGTATTAATATA
1 TGTATTATTTATTAATATA
21024493 TGTATATATTTATT
1 TGTAT-TATTTATT
21024507 TATTTATTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 10 0.38
17 3 0.12
18 3 0.12
19 3 0.12
20 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (19 bp):
TGTATTATTTATTAATATA
Found at i:21024507 original size:57 final size:57
Alignment explanation
Indices: 21024446--21024567 Score: 128
Period size: 57 Copynumber: 2.1 Consensus size: 57
21024436 TCTTCTTTTG
*
21024446 TATTTTATGTATTG-TATTATTTA-T-TATTATTATTATGTAT-TAATATATGTATATATT
1 TATTTTATGTATTGTTAATATTTAGTGTATT-TTATTATGTATGT-ATATA--TATATATT
* *
21024503 TA-TTTATTTATTGTTAATATTTATGTGTATTTTATTATTTATGTATATATATATATT
1 TATTTTATGTATTGTTAATATTTA-GTGTATTTTATTATGTATGTATATATATATATT
*
21024560 TTTTTTAT
1 TATTTTAT
21024568 CTTTTTTATT
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
56 10 0.18
57 19 0.35
58 5 0.09
59 16 0.29
60 5 0.09
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.64
Consensus pattern (57 bp):
TATTTTATGTATTGTTAATATTTAGTGTATTTTATTATGTATGTATATATATATATT
Found at i:21024543 original size:18 final size:18
Alignment explanation
Indices: 21024502--21024546 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
21024492 ATGTATATAT
21024502 TTATTTAT-TTATTGTTA
1 TTATTTATGTTATTGTTA
*
21024519 ATATTTATGTGTATT-TTA
1 TTATTTATGT-TATTGTTA
21024537 TTATTTATGT
1 TTATTTATGT
21024547 ATATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 7 0.29
18 13 0.54
19 4 0.17
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (18 bp):
TTATTTATGTTATTGTTA
Found at i:21024563 original size:28 final size:30
Alignment explanation
Indices: 21024449--21024567 Score: 79
Period size: 31 Copynumber: 4.0 Consensus size: 30
21024439 TCTTTTGTAT
** * *
21024449 TTTATGTATTGTAT-TATTTATTATTATTA
1 TTTATGTATAATATATATATATTTTTATTA
* *
21024478 -TTATGTATTAATATATGTATATATTTATTTA
1 TTTATGTA-TAATATATATATATTTTTA-TTA
* * *
21024509 TTTATTGT-TAATATTTATGTGTATTTTATTA
1 TTTA-TGTATAATATATATATAT-TTTTATTA
21024540 TTTATGTAT-ATATATATAT-TTTTT-TTA
1 TTTATGTATAATATATATATATTTTTATTA
21024567 T
1 T
21024568 CTTTTTTATT
Statistics
Matches: 70, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
27 4 0.06
28 11 0.16
29 5 0.07
30 19 0.27
31 21 0.30
32 7 0.10
33 3 0.04
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (30 bp):
TTTATGTATAATATATATATATTTTTATTA
Found at i:21024576 original size:63 final size:61
Alignment explanation
Indices: 21024467--21024642 Score: 146
Period size: 63 Copynumber: 2.8 Consensus size: 61
21024457 TTGTATTATT
* * *
21024467 TATTATTATTA-TTATGTAT-TAATATATGTATATATTTATTTATTTATTGTTAAT-ATTTATGT
1 TATT-TTATTATTTATGTATAT-ATATATATATTTTTTTATTTATTTATT-TTAATCATTT-T-T
21024529 G
61 G
* *
21024530 TATTTTATTATTTATGTATATATATATAT-TTTTTTTATCTTTTTTATTTTATTCATTTTTG
1 TATTTTATTATTTATGTATATATATATATATTTTTTTAT-TTATTTATTTTAATCATTTTTG
* *
21024591 TATTTTTACTTATCTAAT-TATATATCTGATATATTTTTTTATTATTATTTAT
1 TA-TTTTA-TTAT-TTATGTATATATAT-ATATATTTTTTTA-T-TTATTTAT
21024643 CCTATAATAT
Statistics
Matches: 94, Mismatches: 9, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
61 4 0.04
62 23 0.24
63 43 0.46
64 8 0.09
65 8 0.09
66 8 0.09
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (61 bp):
TATTTTATTATTTATGTATATATATATATATTTTTTTATTTATTTATTTTAATCATTTTTG
Found at i:21024998 original size:26 final size:24
Alignment explanation
Indices: 21024956--21025009 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
21024946 CTGGGAGTGA
*
21024956 GAAAAATTTTTTAGAAATTTTTGG
1 GAAAAATTTTTTAGAAATTTCTGG
* *
21024980 CGAAAATTTTTTCTGGAAATTTCTGG
1 -GAAAAATTTTT-TAGAAATTTCTGG
21025006 GAAA
1 GAAA
21025010 TTTCCAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.41
Consensus pattern (24 bp):
GAAAAATTTTTTAGAAATTTCTGG
Found at i:21025077 original size:31 final size:31
Alignment explanation
Indices: 21025018--21025084 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
21025008 AATTTCCAGA
* * ** *
21025018 TTCCGACGAAAATTTCGACGAAGTTTGAATT
1 TTCCGACGAAAATTCCGACAAACCTTGAAGT
*
21025049 TTCCGACGAAAATTCCGGCAAACCTTGAAGT
1 TTCCGACGAAAATTCCGACAAACCTTGAAGT
21025080 TTCCG
1 TTCCG
21025085 GCGACCTGCC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (31 bp):
TTCCGACGAAAATTCCGACAAACCTTGAAGT
Found at i:21025147 original size:19 final size:20
Alignment explanation
Indices: 21025123--21025161 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
21025113 GGTCTTCTCG
21025123 TTCCGG-CAAATTTTCCAGA
1 TTCCGGTCAAATTTTCCAGA
* *
21025142 TTCCGGTGACATTTTCCAGA
1 TTCCGGTCAAATTTTCCAGA
21025162 AGGTACCGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (20 bp):
TTCCGGTCAAATTTTCCAGA
Found at i:21025474 original size:1 final size:1
Alignment explanation
Indices: 21025468--21025536 Score: 111
Period size: 1 Copynumber: 69.0 Consensus size: 1
21025458 CCGCTCCAGG
* * *
21025468 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTATTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
21025533 TTTT
1 TTTT
21025537 ATTTCTTTAG
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 62 1.00
ACGTcount: A:0.04, C:0.00, G:0.00, T:0.96
Consensus pattern (1 bp):
T
Found at i:21025537 original size:24 final size:23
Alignment explanation
Indices: 21025468--21025545 Score: 111
Period size: 23 Copynumber: 3.3 Consensus size: 23
21025458 CCGCTCCAGG
* *
21025468 TTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTATTTTTTTTTTTTTTA
*
21025491 TTTTTTTTTTTTTTTTTTTTTTA
1 TTTTTTTATTTTTTTTTTTTTTA
21025514 TTTTTTTATTTATTTTTTTTTTTA
1 TTTTTTTATTT-TTTTTTTTTTTA
*
21025538 TTTCTTTA
1 TTTTTTTA
21025546 GATTAGGTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 32 0.63
24 19 0.37
ACGTcount: A:0.06, C:0.01, G:0.00, T:0.92
Consensus pattern (23 bp):
TTTTTTTATTTTTTTTTTTTTTA
Found at i:21025755 original size:116 final size:115
Alignment explanation
Indices: 21025613--21026012 Score: 599
Period size: 116 Copynumber: 3.4 Consensus size: 115
21025603 TAAAAATAAA
21025613 AAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
1 AAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
*
21025678 CCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAT
66 CCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-AGAAAT
21025729 -AAATTTCGAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATT
1 AAAATTTC-AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATT
*
21025793 TCCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAAT
65 TCCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCCTAGAAAT
* *
21025845 AAAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGCAATAAATT
1 AAAATTTC-AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATT
* * * *
21025910 TTCAAAAAA-AGGGTTTTCGAGGAAAAGTTGGAAGTATCAATTTTCCTTGAAAAT
65 TCCAAAAAATA---TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTAG-AAAT
* * *
21025964 CGAAATTTC-CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 -AAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT
21026013 TCCTAAAAAA
Statistics
Matches: 264, Mismatches: 12, Indels: 14
0.91 0.04 0.05
Matches are distributed among these distances:
115 7 0.03
116 100 0.38
117 75 0.28
118 46 0.17
119 29 0.11
120 7 0.03
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (115 bp):
AAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
CCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAT
Found at i:21025772 original size:59 final size:57
Alignment explanation
Indices: 21025614--21026012 Score: 566
Period size: 59 Copynumber: 6.8 Consensus size: 57
21025604 AAAAATAAAA
*
21025614 AAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
1 AAATTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
* *
21025672 AAATTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAT
1 AAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
*
21025729 AAATTTCGAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
1 AAATTTC--AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
* * *
21025788 AAATTTCCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAAT
1 AAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
*
21025845 AAAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGCAAT
1 -AAATTTC--AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
** * * *
21025905 AAATTTTCAAAAAAAGGGTTTTCGAGGAAAAGTTGGAAGTATCAATTTTCCTT-GAAAAT
1 AAA-TTTCAAAAAAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT
*
21025964 CGAAATTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 --AAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
21026013 TCCTAAAAAA
Statistics
Matches: 305, Mismatches: 26, Indels: 19
0.87 0.07 0.05
Matches are distributed among these distances:
57 100 0.33
58 22 0.07
59 120 0.39
60 60 0.20
61 3 0.01
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (57 bp):
AAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
Found at i:21026884 original size:21 final size:21
Alignment explanation
Indices: 21026835--21026884 Score: 50
Period size: 20 Copynumber: 2.4 Consensus size: 21
21026825 CTCCAAAATT
* *
21026835 TGAATCTTTAAATGTTGGATG
1 TGAATCCTTAAATGTTGCATG
*
21026856 T-AAGCCTTACAAT-TTGCATG
1 TGAATCCTTA-AATGTTGCATG
21026876 TGAATCCTT
1 TGAATCCTT
21026885 GAATTAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (21 bp):
TGAATCCTTAAATGTTGCATG
Found at i:21026982 original size:15 final size:15
Alignment explanation
Indices: 21026947--21026976 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
21026937 CTAAATTCTA
*
21026947 GTGAATCTTTGAATT
1 GTGAACCTTTGAATT
21026962 GTGAACCTTTGAATT
1 GTGAACCTTTGAATT
21026977 TCGAACTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (15 bp):
GTGAACCTTTGAATT
Found at i:21027143 original size:44 final size:43
Alignment explanation
Indices: 21027056--21027401 Score: 292
Period size: 44 Copynumber: 8.3 Consensus size: 43
21027046 AAGTTTGTAA
* * **
21027056 AGGAGCATTATTTATTTTTCAAAGTCGTTTAGCCTCTAATTAG
1 AGGAGCATTATTTATTTTTCAAAGTTGTTAAGCCTCTGTTTAG
21027099 AGGAGCATTATTTATTTTTCAAAAGTTGTTAAGCCTCTGTTTAG
1 AGGAGCATTATTTATTTTTC-AAAGTTGTTAAGCCTCTGTTTAG
* * *
21027143 AGAAGCATTATTTATTTTTCAAAAGTTGTTAAGCTTCTGATTAG
1 AGGAGCATTATTTATTTTTC-AAAGTTGTTAAGCCTCTGTTTAG
* * * * *
21027187 AAGAGCTTTATTT-TTCTAC-AA-TTGTTAAGCCTTTGTTTAG
1 AGGAGCATTATTTATTTTTCAAAGTTGTTAAGCCTCTGTTTAG
* * * * *
21027227 ATGAGC---CTTTATTTTTCTAAAGTTATTGAGCCTCTGTGTAG
1 AGGAGCATTATTTATTTTTC-AAAGTTGTTAAGCCTCTGTTTAG
* * *
21027268 AGGAGCCCTTA-TTA-TTCT-AAAGTTGTTGAGCCTCTGTTTAG
1 AGGAG-CATTATTTATTTTTCAAAGTTGTTAAGCCTCTGTTTAG
* *
21027309 AGGA--ACT-TTTATTTTTCAAAGTTG-TAGAGCCTTTGTTTAG
1 AGGAGCATTATTTATTTTTCAAAGTTGTTA-AGCCTCTGTTTAG
* * * *
21027349 A--AG-AGTCTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCATTATTTATTTTTCAAAGTTGTTAAGCCTCTGTTTAG
*
21027389 AGGAGCTTTATTT
1 AGGAGCATTATTT
21027402 TTCAAGTTGT
Statistics
Matches: 244, Mismatches: 40, Indels: 38
0.76 0.12 0.12
Matches are distributed among these distances:
37 3 0.01
38 9 0.04
39 6 0.02
40 72 0.30
41 47 0.19
42 3 0.01
43 31 0.13
44 73 0.30
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.43
Consensus pattern (43 bp):
AGGAGCATTATTTATTTTTCAAAGTTGTTAAGCCTCTGTTTAG
Found at i:21027259 original size:41 final size:41
Alignment explanation
Indices: 21027066--21027426 Score: 326
Period size: 40 Copynumber: 8.9 Consensus size: 41
21027056 AGGAGCATTA
* * ** *
21027066 TTTATTTTTC-AAAGTCGTTTAGCCTCTAATTAGAGGAGCATTA
1 TTTATTTTTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAGC---C
* * * *
21027109 TTTATTTTTCAAAAGTTGTTAAGCCTCTGTTTAGAGAAGCATTA
1 TTTATTTTTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAGC---C
* * * * *
21027153 TTTATTTTTCAAAAGTTGTTAAGCTTCTGATTAGAAGAG-C
1 TTTATTTTTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAGCC
* * *
21027193 TTTATTTTTCTACAA-TTGTTAAGCCTTTGTTTAGATGAGCC
1 TTTATTTTTCTA-AAGTTGTTGAGCCTCTGTTTAGAGGAGCC
* *
21027234 TTTATTTTTCTAAAGTTATTGAGCCTCTGTGTAGAGGAGCC
1 TTTATTTTTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAGCC
* * * *
21027275 CTTATTATTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAACT
1 TTTATTTTTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAGCC
* * * *
21027316 TTTATTTTTC-AAAGTTGTAGAGCCTTTGTTTAGAAGAGTC
1 TTTATTTTTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAGCC
*
21027356 TTTATTTTTC-AAAGTCGTTGAGCCTCTGTTTAGAGGAG-C
1 TTTATTTTTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAGCC
* *
21027395 TTTATTTTTC--AAGTTG-TGAGTCACTGTTTAGA
1 TTTATTTTTCTAAAGTTGTTGAGCCTCTGTTTAGA
21027427 AAAATTCTTA
Statistics
Matches: 273, Mismatches: 41, Indels: 14
0.83 0.12 0.04
Matches are distributed among these distances:
37 14 0.05
38 5 0.02
39 11 0.04
40 91 0.33
41 79 0.29
43 10 0.04
44 63 0.23
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.44
Consensus pattern (41 bp):
TTTATTTTTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAGCC
Found at i:21027359 original size:122 final size:120
Alignment explanation
Indices: 21027109--21027427 Score: 344
Period size: 122 Copynumber: 2.6 Consensus size: 120
21027099 AGGAGCATTA
* * * *
21027109 TTTATTTTTCAAAAGTTGTTAAGCCTCTGTTTAGAGAAGCATTATTTATTTTTCAAAAGTTGTTA
1 TTTATTTTTC-AAAGTTGTTGAGCCTCTGTTTAGAGGAGCATTA-TTA---TTCTAAAGTTGTTG
* * * *
21027174 AGCTTCTGATTAGAAGAGCTTTATTTTTCTACAATTGTTAAGCCTTTGTTTAGATGAGCC
61 AGCCTCTGTTTAGAAGAACTTTATTTTTCTACAATTGTTAAGCCTTTGTTTAGAAGAGCC
* * *
21027234 TTTATTTTTCTAAAGTTATTGAGCCTCTGTGTAGAGGAGCCCTTATTATTCTAAAGTTGTTGAGC
1 TTTATTTTTC-AAAGTTGTTGAGCCTCTGTTTAGAGGAG-CATTATTATTCTAAAGTTGTTGAGC
* *
21027299 CTCTGTTTAGAGGAACTTTTATTTTTC-A-AAGTTG-TAGAGCCTTTGTTTAGAAGAGTC
64 CTCTGTTTAGAAGAAC-TTTATTTTTCTACAA-TTGTTA-AGCCTTTGTTTAGAAGAGCC
* * * * *
21027356 TTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCTTTATT-TT-TCAAGTTG-TGAGTCA
1 TTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCATTATTATTCTAAAGTTGTTGAGCCT
21027418 CTGTTTAGAA
66 CTGTTTAGAA
21027428 AAATTCTTAT
Statistics
Matches: 168, Mismatches: 22, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
117 14 0.08
118 7 0.04
119 2 0.01
120 6 0.04
121 29 0.17
122 59 0.35
123 10 0.06
125 37 0.22
126 4 0.02
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.44
Consensus pattern (120 bp):
TTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCATTATTATTCTAAAGTTGTTGAGCCT
CTGTTTAGAAGAACTTTATTTTTCTACAATTGTTAAGCCTTTGTTTAGAAGAGCC
Done.