Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 117 of 131
Found at i:21027763 original size:3 final size:3
Alignment explanation
Indices: 21027757--21027816 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
21027747 AAAAAAAAGA
21027757 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
21027805 AAT AAT AAT AAT
1 AAT AAT AAT AAT
21027817 GAGGATTTCT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:21028163 original size:21 final size:20
Alignment explanation
Indices: 21028119--21028163 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
21028109 ATATTCATAT
*
21028119 TTTTTGGTGAGATTTTTTAG
1 TTTTTGGTGAGATTTTTTAA
**
21028139 TTTTTGGTGATTTTTTTTCAA
1 TTTTTGGTGAGATTTTTT-AA
21028160 TTTT
1 TTTT
21028164 CAGTGAAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.13, C:0.02, G:0.18, T:0.67
Consensus pattern (20 bp):
TTTTTGGTGAGATTTTTTAA
Found at i:21028494 original size:22 final size:23
Alignment explanation
Indices: 21028469--21028529 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 23
21028459 TATTTTGGTA
* *
21028469 ATTTTATTTTTTTTA-TTATTTT
1 ATTTCATTATTTTTATTTATTTT
21028491 ATTTCATTATTTTTATTTA-TTT
1 ATTTCATTATTTTTATTTATTTT
* *
21028513 ATTCCATT-TGTTTATTT
1 ATTTCATTATTTTTATTT
21028530 TTCTTTTTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 8 0.24
22 23 0.68
23 3 0.09
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.74
Consensus pattern (23 bp):
ATTTCATTATTTTTATTTATTTT
Found at i:21028527 original size:27 final size:25
Alignment explanation
Indices: 21028471--21028531 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 25
21028461 TTTTGGTAAT
**
21028471 TTTATTTTTTTTATTATTTTATTTC
1 TTTATTTTTTTTATTATTCCATTTC
* *
21028496 ATTATTTTTATTTATTTATTCCATTTG
1 TTTATTTTT-TTTA-TTATTCCATTTC
21028523 TTTATTTTT
1 TTTATTTTT
21028532 CTTTTTCTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 8 0.28
26 4 0.14
27 17 0.59
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (25 bp):
TTTATTTTTTTTATTATTCCATTTC
Found at i:21028582 original size:20 final size:21
Alignment explanation
Indices: 21028557--21028597 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
21028547 TTGTATGATT
*
21028557 AAATTTTAGAA-AAAATAAAA
1 AAATTTTAAAACAAAATAAAA
21028577 AAATTTTAAAACAAAATAAAA
1 AAATTTTAAAACAAAATAAAA
21028598 TGTTTTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (21 bp):
AAATTTTAAAACAAAATAAAA
Found at i:21028654 original size:25 final size:25
Alignment explanation
Indices: 21028626--21028674 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
21028616 ATAATTATCT
21028626 AATGATGAAATTTTTA-AAAATTTCA
1 AATGAT-AAATTTTTATAAAATTTCA
*
21028651 AATGGTAAATTTTTATAAAATTTC
1 AATGATAAATTTTTATAAAATTTC
21028675 TATGTGAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (25 bp):
AATGATAAATTTTTATAAAATTTCA
Found at i:21028790 original size:19 final size:19
Alignment explanation
Indices: 21028766--21028803 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
21028756 TTTCAAACAA
21028766 AAAAAATAAAAATAAAAAT
1 AAAAAATAAAAATAAAAAT
**
21028785 AAAAAATATTAATAAAAAT
1 AAAAAATAAAAATAAAAAT
21028804 TTTGGAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (19 bp):
AAAAAATAAAAATAAAAAT
Found at i:21029277 original size:169 final size:172
Alignment explanation
Indices: 21028839--21029292 Score: 549
Period size: 174 Copynumber: 2.6 Consensus size: 172
21028829 AGAATTATAT
* * *
21028839 TCTTAAAAATTTGAAATGGTAAATTTTTAAGAAATCTCTAGGTGAGAAATTTCTCTAAATTTGTC
1 TCTTAAAAATTTCAAATGGTAAATTTTTAAGAAATCTCTAGGTAAAAAATTTCTCTAAATTTGTC
* * * * * * *
21028904 CCAAATGGTAGAATAATTCAGATAAAATTTTAATAAAATTAATTGTATTGTTTTACAAATATAAA
66 ACAAATGGTGGAATAATTTAGATAAAATTTCAATAAAAATAATTGTACTATTTTACAAATATAAA
* * *
21028969 AATTTGGTTGAAAATAATTGATAATTAATCCAATAATGAGAT
131 AATTTGGTTGAAAATAATTGACAAGTAATCCAATAATGAGAC
* *
21029011 TTTTAAAAATTTCAAATGGTAACATTTTTTACA-AAATATCTAGGTAAAAAATTTCTCTAAATTT
1 TCTTAAAAATTTCAAATGGTAA-A-TTTTTA-AGAAATCTCTAGGTAAAAAATTTCTCTAAATTT
* *
21029075 GTCTCAAATGGTGGAATAATTTAGATAAAATTTCAATAAAAATAATTGTACTATTTTCCAAATA-
63 GTCACAAATGGTGGAATAATTTAGATAAAATTTCAATAAAAATAATTGTACTATTTTACAAATAT
* * * * * *
21029139 GAAATTTTGGTTGAAAATATTTGACAAGT-ATCTAATGA-GGGAC
128 AAAAATTTGGTTGAAAATAATTGACAAGTAATCCAATAATGAGAC
* * * * *
21029182 TCTTAGAAATTTCAAATGGTAAATTTCTAAGAAATCTCTAGATCAAAAATTT-TTTAAAATTTGT
1 TCTTAAAAATTTCAAATGGTAAATTTTTAAGAAATCTCTAGGTAAAAAATTTCTCT-AAATTTGT
* * * *
21029246 CACAAATGGTGGAACAATTTAAATGAAATTTCAAGAAAAATAATTGT
65 CACAAATGGTGGAATAATTTAGATAAAATTTCAATAAAAATAATTGT
21029293 CATATTATTT
Statistics
Matches: 243, Mismatches: 34, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
168 3 0.01
169 73 0.30
170 1 0.00
171 23 0.09
172 27 0.11
173 25 0.10
174 90 0.37
175 1 0.00
ACGTcount: A:0.43, C:0.08, G:0.12, T:0.37
Consensus pattern (172 bp):
TCTTAAAAATTTCAAATGGTAAATTTTTAAGAAATCTCTAGGTAAAAAATTTCTCTAAATTTGTC
ACAAATGGTGGAATAATTTAGATAAAATTTCAATAAAAATAATTGTACTATTTTACAAATATAAA
AATTTGGTTGAAAATAATTGACAAGTAATCCAATAATGAGAC
Found at i:21036502 original size:15 final size:15
Alignment explanation
Indices: 21036482--21036524 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
21036472 AAATATGTTT
* *
21036482 ACAAATAAATGAATA
1 ACAAATAAATAAAGA
21036497 ACAAATAAATAAAGA
1 ACAAATAAATAAAGA
21036512 ACAAATAAATAAA
1 ACAAATAAATAAA
21036525 TTAAATGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.72, C:0.07, G:0.05, T:0.16
Consensus pattern (15 bp):
ACAAATAAATAAAGA
Found at i:21036557 original size:16 final size:16
Alignment explanation
Indices: 21036516--21036557 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
21036506 TAAAGAACAA
*
21036516 ATAAATAAATTAAATGG
1 ATAAATAAA-TAAATAG
*
21036533 A-AAACAAATAAATAG
1 ATAAATAAATAAATAG
21036548 ATAAATAAAT
1 ATAAATAAAT
21036558 TACTAAACAT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 7 0.33
16 13 0.62
17 1 0.05
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (16 bp):
ATAAATAAATAAATAG
Found at i:21036895 original size:24 final size:23
Alignment explanation
Indices: 21036855--21036900 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
21036845 TTAGATTTTC
*
21036855 TTTTTCTGTTCTCTCTCTTTCTT
1 TTTTTCTCTTCTCTCTCTTTCTT
*
21036878 TTTTTCTCTATCTTTCTCTTTCT
1 TTTTTCTCT-TCTCTCTCTTTCT
21036901 AGAATCGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.02, C:0.26, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTTTCTCTTCTCTCTCTTTCTT
Found at i:21042388 original size:2 final size:2
Alignment explanation
Indices: 21042381--21042423 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
21042371 AGTCTAGCAC
*
21042381 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21042423 T
1 T
21042424 TTGTACTTAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:21044028 original size:21 final size:20
Alignment explanation
Indices: 21044004--21044054 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
21043994 TAATTAATTA
21044004 CAATCTCACCATTATAGTAAC
1 CAATCTCACCA-TATAGTAAC
* *
21044025 CAATCTCTTCCATATAGTAAT
1 CAATCTC-ACCATATAGTAAC
*
21044046 AAATCTCAC
1 CAATCTCAC
21044055 TTTCATCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 1 0.04
21 21 0.84
22 3 0.12
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.31
Consensus pattern (20 bp):
CAATCTCACCATATAGTAAC
Found at i:21046237 original size:25 final size:25
Alignment explanation
Indices: 21046209--21046256 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
21046199 TTAATTATCC
21046209 AATGATGAAATTTTTA-AAAATTTCA
1 AATGAT-AAATTTTTATAAAATTTCA
*
21046234 AATGGTAAATTTTTATAAAATTT
1 AATGATAAATTTTTATAAAATTT
21046257 TTAGGTAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (25 bp):
AATGATAAATTTTTATAAAATTTCA
Found at i:21050893 original size:14 final size:14
Alignment explanation
Indices: 21050876--21050906 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
21050866 AGGGAAAGAG
21050876 AAAAAAAAGAT-GA
1 AAAAAAAAGATAGA
21050889 AAAAAAAAGATAGA
1 AAAAAAAAGATAGA
21050903 AAAA
1 AAAA
21050907 GAAGACTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (14 bp):
AAAAAAAAGATAGA
Found at i:21050911 original size:13 final size:13
Alignment explanation
Indices: 21050874--21050911 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
21050864 AAAGGGAAAG
21050874 AGAAAAAAAAGAT
1 AGAAAAAAAAGAT
21050887 -GAAAAAAAAAGAT
1 AG-AAAAAAAAGAT
*
21050900 AGAAAAAGAAGA
1 AGAAAAAAAAGA
21050912 CTCAAATTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 1 0.05
13 20 0.91
14 1 0.05
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.05
Consensus pattern (13 bp):
AGAAAAAAAAGAT
Found at i:21051957 original size:22 final size:21
Alignment explanation
Indices: 21051909--21051959 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
21051899 GAATCTTTTG
* *
21051909 ATGAGAATCTTTGAATTTCAA
1 ATGAAAATCATTGAATTTCAA
* *
21051930 AGGAAAATCATTGAGTTCTCAA
1 ATGAAAATCATTGAATT-TCAA
21051952 ATGAAAAT
1 ATGAAAAT
21051960 TTTTTAGTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (21 bp):
ATGAAAATCATTGAATTTCAA
Found at i:21051992 original size:22 final size:21
Alignment explanation
Indices: 21051914--21051992 Score: 61
Period size: 22 Copynumber: 3.7 Consensus size: 21
21051904 TTTTGATGAG
*
21051914 AATCTTTGAA-TTTCAAAGGAA
1 AATCTTTGAATTTTCAAA-TAA
* * *
21051935 AATCATTGAGTTCTCAAATGAA
1 AATCTTTGAATTTTCAAAT-AA
* * *
21051957 AATTTTTTAGTTTTCAAATAA
1 AATCTTTGAATTTTCAAATAA
21051978 GAATCTTTGAATTTT
1 -AATCTTTGAATTTT
21051993 TTAGTTCTCA
Statistics
Matches: 44, Mismatches: 11, Indels: 5
0.73 0.18 0.08
Matches are distributed among these distances:
21 10 0.23
22 34 0.77
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42
Consensus pattern (21 bp):
AATCTTTGAATTTTCAAATAA
Found at i:21051993 original size:30 final size:30
Alignment explanation
Indices: 21051957--21052021 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
21051947 CTCAAATGAA
*
21051957 AATTTTTTAGTTTTCAAATAAGAATCTTTG
1 AATTTTTTAGTTCTCAAATAAGAATCTTTG
* *
21051987 AATTTTTTAGTTCTCAAATGAGAGTCTTTG
1 AATTTTTTAGTTCTCAAATAAGAATCTTTG
21052017 AATTT
1 AATTT
21052022 CAAATGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.49
Consensus pattern (30 bp):
AATTTTTTAGTTCTCAAATAAGAATCTTTG
Found at i:21052437 original size:43 final size:43
Alignment explanation
Indices: 21052380--21052491 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 43
21052370 AGCCTTTGTT
* *
21052380 TTTC-AAAGTTGTTGAGCCTCTATTTAAAGGAGCCTTATTTAC
1 TTTCTAAAGTTGTTGAGCCTCTATTTAAAGAACCCTTATTTAC
* * * * **
21052422 TTTCTAAAGTCGTTGAACCTCTGTTTAGAGAACCCTTATTTTT
1 TTTCTAAAGTTGTTGAGCCTCTATTTAAAGAACCCTTATTTAC
*
21052465 TTTTTCAAAGTTGTTGAGCCT-TATTTA
1 TTTCT-AAAGTTGTTGAGCCTCTATTTA
21052492 TTTTTTCAAA
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 4 0.07
43 39 0.70
44 13 0.23
ACGTcount: A:0.24, C:0.16, G:0.15, T:0.45
Consensus pattern (43 bp):
TTTCTAAAGTTGTTGAGCCTCTATTTAAAGAACCCTTATTTAC
Found at i:21052510 original size:115 final size:114
Alignment explanation
Indices: 21052378--21052600 Score: 286
Period size: 115 Copynumber: 1.9 Consensus size: 114
21052368 AGAGCCTTTG
* * *
21052378 TTTTTCAAAGTTGTTGAGCCTCTATTTAAAGGAGCCTTATTT-ACTTTCTAAAGTCGTTGAACCT
1 TTTTTCAAAGTCGTTGAGCCTCTATTTAAAGGAGCCTTATTTAATTTTC-AAAGTCATTGAACCT
* * ** **
21052442 CTGTTTAGAGAACCCTTATTTTTTTTTTCAAAGTTGTTGAGCCTTATTTAT
65 CTATTTAGAAAACCCTTATTTAATTTTT-AAAGTCATTGAGCCTTATTTAT
* * * * *
21052493 TTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGTCTTATTTAATTTTCAAAGTTATTGAGCCTC
1 TTTTTCAAAGTCGTTGAGCCTCTATTTAAAGGAGCCTTATTTAATTTTCAAAGTCATTGAACCTC
*
21052558 TATTTAGAAAAGCCTTATTTAATTTTTAAAGTCATTGAGCCTT
66 TATTTAGAAAACCCTTATTTAATTTTTAAAGTCATTGAGCCTT
21052601 TGCTTAAAGG
Statistics
Matches: 92, Mismatches: 15, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
114 14 0.15
115 73 0.79
116 5 0.05
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.45
Consensus pattern (114 bp):
TTTTTCAAAGTCGTTGAGCCTCTATTTAAAGGAGCCTTATTTAATTTTCAAAGTCATTGAACCTC
TATTTAGAAAACCCTTATTTAATTTTTAAAGTCATTGAGCCTTATTTAT
Found at i:21052520 original size:29 final size:28
Alignment explanation
Indices: 21052455--21052513 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
21052445 TTTAGAGAAC
* *
21052455 CCTTATTTTTTTTTTCAAAGTTGTTGAG
1 CCTTATTTATTTTTTCAAAGTCGTTGAG
21052483 CCTTATTTATTTTTTCAAAGTCGTTGAG
1 CCTTATTTATTTTTTCAAAGTCGTTGAG
21052511 CCT
1 CCT
21052514 CTGTTTAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.53
Consensus pattern (28 bp):
CCTTATTTATTTTTTCAAAGTCGTTGAG
Found at i:21052546 original size:43 final size:43
Alignment explanation
Indices: 21052480--21052697 Score: 226
Period size: 43 Copynumber: 5.1 Consensus size: 43
21052470 CAAAGTTGTT
* *
21052480 GAGCCTTATTTATTTTTTCAAAGTCGTTGAGCCTCTGTTTAGAG
1 GAGCCTTATTTA-ATTTTCAAAGTCATTGAGCCTCTGTTTAGAG
* * * *
21052524 GAGTCTTATTTAATTTTCAAAGTTATTGAGCCTCTATTTAGAA
1 GAGCCTTATTTAATTTTCAAAGTCATTGAGCCTCTGTTTAGAG
* * * * *
21052567 AAGCCTTATTTAATTTTTAAAGTCATTGAGCCTTTGCTTAAAG
1 GAGCCTTATTTAATTTTCAAAGTCATTGAGCCTCTGTTTAGAG
* **
21052610 GAGCCCTATTT-ATTTTCCAAAGTCATT-AGACCTCTACTTAGA-
1 GAGCCTTATTTAATTTT-CAAAGTCATTGAG-CCTCTGTTTAGAG
* * **
21052652 GAGCCTAATTTGATTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
1 GAGCCTTATTTAATTTTCAAAGTCATTGAGCCTCTGTTTAGAG
21052695 GAG
1 GAG
21052698 TTTTTATGAA
Statistics
Matches: 142, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
42 34 0.24
43 97 0.68
44 11 0.08
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (43 bp):
GAGCCTTATTTAATTTTCAAAGTCATTGAGCCTCTGTTTAGAG
Found at i:21052553 original size:71 final size:71
Alignment explanation
Indices: 21052409--21052563 Score: 204
Period size: 71 Copynumber: 2.2 Consensus size: 71
21052399 CTATTTAAAG
**
21052409 GAGCCTTATTTACTTTCTAAAGTCGTTGAACCTCTGTTTAGAGAACCCTTATTTTTTTTTTCAAA
1 GAGCCTTATTTACTTTCTAAAGTCGTTGAACCTCTGTTTAGAGAACCCTTATTTTAATTTTCAAA
*
21052474 GTTGTT
66 GTTATT
* * * * **
21052480 GAGCCTTATTTATTTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGTCTTA-TTTAATTTTCAA
1 GAGCCTTATTTACTTTCT-AAAGTCGTTGAACCTCTGTTTAGAGAACCCTTATTTTAATTTTCAA
21052544 AGTTATT
65 AGTTATT
21052551 GAGCCTCTATTTA
1 GAGCCT-TATTTA
21052564 GAAAAGCCTT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
71 38 0.52
72 35 0.48
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (71 bp):
GAGCCTTATTTACTTTCTAAAGTCGTTGAACCTCTGTTTAGAGAACCCTTATTTTAATTTTCAAA
GTTATT
Found at i:21057705 original size:20 final size:22
Alignment explanation
Indices: 21057667--21057706 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
21057657 AATATAATAG
*
21057667 TTAGCTTTTTTATGTTATGGTA
1 TTAGCTTTTTTATGCTATGGTA
21057689 TTAGC-TTTTTAT-CTATGG
1 TTAGCTTTTTTATGCTATGG
21057707 ATGATAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 7 0.41
22 5 0.29
ACGTcount: A:0.17, C:0.07, G:0.17, T:0.57
Consensus pattern (22 bp):
TTAGCTTTTTTATGCTATGGTA
Found at i:21057823 original size:33 final size:33
Alignment explanation
Indices: 21057763--21057825 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
21057753 TTTATATAAT
* *
21057763 TATTATTACTACTAATAATAATAATAATATTTA
1 TATTATTACTACTAACAAAAATAATAATATTTA
* * *
21057796 TATTATTATTATTAACAAAAATTATAATAT
1 TATTATTACTACTAACAAAAATAATAATAT
21057826 AAAAAAATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (33 bp):
TATTATTACTACTAACAAAAATAATAATATTTA
Found at i:21058871 original size:18 final size:18
Alignment explanation
Indices: 21058831--21058873 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
21058821 ATTGAATATA
21058831 AATAAATTTTGTTACATT
1 AATAAATTTTGTTACATT
* *
21058849 TATAAATTTTATTTA-ATT
1 AATAAATTTT-GTTACATT
21058867 AATAAAT
1 AATAAAT
21058874 ATTAATTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
AATAAATTTTGTTACATT
Found at i:21060340 original size:20 final size:22
Alignment explanation
Indices: 21060301--21060341 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
21060291 AAATACAATA
*
21060301 GTTAGCCTTTTTATGTTATGGT
1 GTTAGCCTTTTTATGCTATGGT
21060323 GTTAG-CTTTTTAT-CTATGG
1 GTTAGCCTTTTTATGCTATGG
21060342 ATGGTAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 8 0.44
22 5 0.28
ACGTcount: A:0.15, C:0.10, G:0.22, T:0.54
Consensus pattern (22 bp):
GTTAGCCTTTTTATGCTATGGT
Found at i:21062428 original size:15 final size:15
Alignment explanation
Indices: 21062408--21062439 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
21062398 GGTGCTATTG
21062408 GCTTCTATGTACCTT
1 GCTTCTATGTACCTT
21062423 GCTTCTATGTACCTT
1 GCTTCTATGTACCTT
21062438 GC
1 GC
21062440 ATTGTTCCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.28, G:0.16, T:0.44
Consensus pattern (15 bp):
GCTTCTATGTACCTT
Found at i:21063550 original size:28 final size:28
Alignment explanation
Indices: 21063510--21063566 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
21063500 GATGGACGGA
*
21063510 GTTATGTTTAAAGGGTCACAAGAAACAT
1 GTTATGTTTAAAGGGTAACAAGAAACAT
*
21063538 GTTATGTTTAAAGGGTAACTAGAAACAT
1 GTTATGTTTAAAGGGTAACAAGAAACAT
21063566 G
1 G
21063567 GTAGCTCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (28 bp):
GTTATGTTTAAAGGGTAACAAGAAACAT
Found at i:21065709 original size:2 final size:2
Alignment explanation
Indices: 21065689--21065748 Score: 75
Period size: 2 Copynumber: 29.5 Consensus size: 2
21065679 ATTTAATAAA
* * *
21065689 AT AT CT AT AT ACT AA AT AT AT AT AT AT GT AT AT AT AT AT AT AT
1 AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
21065732 GT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
21065749 AGATATAGTT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
2 47 0.96
3 2 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:21065723 original size:16 final size:16
Alignment explanation
Indices: 21065704--21065747 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
21065694 TATATACTAA
21065704 ATATATATATATGTAT
1 ATATATATATATGTAT
21065720 ATATATATATATGTAT
1 ATATATATATATGTAT
21065736 ATATATATATAT
1 ATATATATATAT
21065748 AAGATATAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (16 bp):
ATATATATATATGTAT
Found at i:21079016 original size:16 final size:17
Alignment explanation
Indices: 21078995--21079026 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
21078985 TCCATCCTCC
21078995 TTTTTC-TTTTCTCTCA
1 TTTTTCTTTTTCTCTCA
21079011 TTTTTCTTTTTCTCTC
1 TTTTTCTTTTTCTCTC
21079027 TCTCAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.03, C:0.25, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTCTTTTTCTCTCA
Found at i:21082241 original size:2 final size:2
Alignment explanation
Indices: 21082236--21082267 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
21082226 ATTTATTTAC
21082236 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21082268 GGATAAACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:21089289 original size:6 final size:6
Alignment explanation
Indices: 21089280--21089323 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
21089270 AGTATAATTG
* *
21089280 TACATA TACAAA AACAAA TACAAA TACAAA TACAAA TACAAA TA
1 TACAAA TACAAA TACAAA TACAAA TACAAA TACAAA TACAAA TA
21089324 TATACAAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.18
Consensus pattern (6 bp):
TACAAA
Found at i:21089890 original size:13 final size:14
Alignment explanation
Indices: 21089874--21089906 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
21089864 TTTTAATGAA
21089874 AAAAAATTA-TAAT
1 AAAAAATTATTAAT
*
21089887 AAAAATTTATTAAT
1 AAAAAATTATTAAT
21089901 AAAAAA
1 AAAAAA
21089907 ATTAAATCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AAAAAATTATTAAT
Found at i:21089898 original size:16 final size:16
Alignment explanation
Indices: 21089856--21089909 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
21089846 ATAAAATTTT
21089856 TAAAAAAA-TT-TTAA
1 TAAAAAAATTTATTAA
*
21089870 TGAAAAAAAATTA-TAA
1 T-AAAAAAATTTATTAA
21089886 T--AAAAATTTATTAA
1 TAAAAAAATTTATTAA
21089900 TAAAAAAATT
1 TAAAAAAATT
21089910 AAATCTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
13 8 0.24
14 5 0.15
15 7 0.21
16 13 0.39
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (16 bp):
TAAAAAAATTTATTAA
Found at i:21090141 original size:17 final size:17
Alignment explanation
Indices: 21090118--21090159 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
21090108 AATACATGTA
*
21090118 TAAAATAATAA-AATAT
1 TAAAATAATAAGAACAT
21090134 TAAAA-ATATAAGAACAT
1 TAAAATA-ATAAGAACAT
21090151 TAAAATAAT
1 TAAAATAAT
21090160 TTTTTATCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 1 0.05
16 9 0.41
17 11 0.50
18 1 0.05
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
TAAAATAATAAGAACAT
Found at i:21093456 original size:12 final size:13
Alignment explanation
Indices: 21093441--21093469 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
21093431 TTTATGGATT
21093441 TTTTAGG-GTTTA
1 TTTTAGGAGTTTA
21093453 TTTTAGGAGTTTA
1 TTTTAGGAGTTTA
21093466 TTTT
1 TTTT
21093470 TAATATGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (13 bp):
TTTTAGGAGTTTA
Found at i:21093456 original size:13 final size:14
Alignment explanation
Indices: 21093440--21093471 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
21093430 TTTTATGGAT
21093440 TTTTTAGG-GTTTA
1 TTTTTAGGAGTTTA
21093453 -TTTTAGGAGTTTA
1 TTTTTAGGAGTTTA
21093466 TTTTTA
1 TTTTTA
21093472 ATATGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 7 0.41
13 5 0.29
14 5 0.29
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.62
Consensus pattern (14 bp):
TTTTTAGGAGTTTA
Found at i:21093553 original size:31 final size:30
Alignment explanation
Indices: 21093510--21093570 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 30
21093500 TTTGTGAGTA
*
21093510 AAATGATAATATTTTATTAATAAATTAAATT
1 AAATAATAATATTTTATTAATAAA-TAAATT
21093541 AAATAATAATATTTTATTAATAAATAAATT
1 AAATAATAATATTTTATTAATAAATAAATT
21093571 TTTTAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 6 0.21
31 23 0.79
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (30 bp):
AAATAATAATATTTTATTAATAAATAAATT
Found at i:21093566 original size:18 final size:17
Alignment explanation
Indices: 21093515--21093581 Score: 56
Period size: 16 Copynumber: 4.1 Consensus size: 17
21093505 GAGTAAAATG
21093515 ATAATATTTTATTAATAA
1 ATAA-ATTTTATTAATAA
21093533 ATTAAA--TTA--AAT-A
1 A-TAAATTTTATTAATAA
21093546 ATAATATTTTATTAATAA
1 ATAA-ATTTTATTAATAA
*
21093564 ATAAATTTT-TTAAAAA
1 ATAAATTTTATTAATAA
21093580 AT
1 AT
21093582 TTTAATTTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 16
0.71 0.02 0.28
Matches are distributed among these distances:
12 3 0.07
13 3 0.07
14 3 0.07
15 3 0.07
16 11 0.27
17 8 0.20
18 7 0.17
19 3 0.07
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATAAATTTTATTAATAA
Found at i:21094247 original size:16 final size:16
Alignment explanation
Indices: 21094226--21094258 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
21094216 TTTCCTTTTG
21094226 AAAGAAAAAGAAATAA
1 AAAGAAAAAGAAATAA
21094242 AAAGAAAAAGAAATAA
1 AAAGAAAAAGAAATAA
21094258 A
1 A
21094259 CTTTGATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (16 bp):
AAAGAAAAAGAAATAA
Found at i:21099849 original size:8 final size:8
Alignment explanation
Indices: 21099836--21099860 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
21099826 GAGGAGCTTT
21099836 AAAGAGAG
1 AAAGAGAG
21099844 AAAGAGAG
1 AAAGAGAG
21099852 AAAGAGAG
1 AAAGAGAG
21099860 A
1 A
21099861 CGCGTGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (8 bp):
AAAGAGAG
Found at i:21107898 original size:136 final size:136
Alignment explanation
Indices: 21107740--21107985 Score: 375
Period size: 136 Copynumber: 1.8 Consensus size: 136
21107730 ATAATATGAC
* * * * * * *
21107740 AATTATTTTTCTTGAAATTTTATTTAAATTCTTCCACAATTTATGACAAATTTAAAGAAATTTCT
1 AATTATTTTTATTCAAAATTTATATAAATTATTCCACAATTTAGGACAAATCTAAAGAAATTTCT
*
21107805 CACCTAGAGATTTCTTAAGAATTTATCATTTGAAATTTCTAAGAAAAATTTTTTTATTTGGAAAA
66 CACCTAGAGATTTCTTAAAAATTTATCATTTGAAATTTCTAAGAAAAATTTTTTTATTTGGAAAA
21107870 GAATAT
131 GAATAT
* * * *
21107876 AATTATTTTTATTCAAAATTTATATAAATTATTCCACTATTTGGGACAAATCTAGATAAATTTCT
1 AATTATTTTTATTCAAAATTTATATAAATTATTCCACAATTTAGGACAAATCTAAAGAAATTTCT
*
21107941 CACCTAGAGATTTTTTAAAAATTTATCATTTGAAATTTCTAAGAA
66 CACCTAGAGATTTCTTAAAAATTTATCATTTGAAATTTCTAAGAA
21107986 TCTTATTATA
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
136 97 1.00
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (136 bp):
AATTATTTTTATTCAAAATTTATATAAATTATTCCACAATTTAGGACAAATCTAAAGAAATTTCT
CACCTAGAGATTTCTTAAAAATTTATCATTTGAAATTTCTAAGAAAAATTTTTTTATTTGGAAAA
GAATAT
Found at i:21108256 original size:16 final size:16
Alignment explanation
Indices: 21108216--21108256 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
21108206 TTTATTCTCA
21108216 AAAATATTTTATTTTTT
1 AAAAT-TTTTATTTTTT
*
21108233 ATATATTTTTATTTTTT
1 A-AAATTTTTATTTTTT
21108250 AAAATTT
1 AAAATTT
21108257 AATTATGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 5 0.24
17 13 0.62
18 3 0.14
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
AAAATTTTTATTTTTT
Found at i:21108617 original size:20 final size:21
Alignment explanation
Indices: 21108570--21108618 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
21108560 TCCTTTAGAT
21108570 TTCTC-TTCTTCTCTCTTTTC
1 TTCTCTTTCTTCTCTCTTTTC
* *
21108590 CTCT-TTTCTTTTC-CTTTTC
1 TTCTCTTTCTTCTCTCTTTTC
21108609 TTCTCTTTCT
1 TTCTCTTTCT
21108619 AAAATTGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (21 bp):
TTCTCTTTCTTCTCTCTTTTC
Found at i:21109196 original size:15 final size:16
Alignment explanation
Indices: 21109147--21109198 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
21109137 AAACCAAATA
21109147 AATAAATAAATTAAT-AT
1 AATAAA-AAA-TAATAAT
21109164 ATATAAAAAATAATAAT
1 A-ATAAAAAATAATAAT
*
21109181 AATAAAAACTAA-AAT
1 AATAAAAAATAATAAT
21109196 AAT
1 AAT
21109199 GAGTGATTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 6 0.19
16 14 0.44
17 7 0.22
18 5 0.16
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (16 bp):
AATAAAAAATAATAAT
Found at i:21109576 original size:43 final size:44
Alignment explanation
Indices: 21109461--21110199 Score: 567
Period size: 43 Copynumber: 16.8 Consensus size: 44
21109451 CTCTAAACAA
* * ** * * *
21109461 AGGCTCAATGACTTTAAAAAAATAAATACGGCTCCTCTAAAT-AA
1 AGGCTCAACGACTTTGAAAAAATAAATAAAGCTCAT-TTAATCAG
**
21109505 AGGCTCAATAACTTTGAAAAAATAAATAAAGCTCATTTAATCAG
1 AGGCTCAACGACTTTGAAAAAATAAATAAAGCTCATTTAATCAG
* ** * * * *
21109549 AGGCTTAATAAGTTT-AGAAAATAAATAAAGATCATCTAATCAG
1 AGGCTCAACGACTTTGAAAAAATAAATAAAGCTCATTTAATCAG
21109592 AGGCTCAACGACTTTGAAAAAATAAATAAAGCTTC-TTTAATCAG
1 AGGCTCAACGACTTTGAAAAAATAAATAAAGC-TCATTTAATCAG
* * * * **
21109636 AGGCT-TACTGATTTTGAAAAAATAAAT-ACGGTTTTTCTAAAT-AG
1 AGGCTCAAC-GACTTTGAAAAAATAAATAAAGCTCATT-T-AATCAG
* * *
21109680 AGGCTCAATGACTTT-AGAAAAATAAA-AAAGCTCTTTTAAACAG
1 AGGCTCAACGACTTTGA-AAAAATAAATAAAGCTCATTTAATCAG
* * * *
21109723 AAGCTTAACGACTTTGAAAAAAATAAATAAAGCTCCTCTAATCAG
1 AGGCTCAACGACTTTG-AAAAAATAAATAAAGCTCATTTAATCAG
* * * *
21109768 AAGCTCAACAACTTTG-AAAAATAAAAAAAGCTCATCTAATCAG
1 AGGCTCAACGACTTTGAAAAAATAAATAAAGCTCATTTAATCAG
* *
21109811 AGGCTCAACGACTTTGAAAAAAATAAATAAAGCTCTTTTAATAAG
1 AGGCTCAACGACTTTG-AAAAAATAAATAAAGCTCATTTAATCAG
* * * * * *
21109856 AGGTTTAACAACTTTG-AAAATTAAATAAAGCTCCTTTAATCAA
1 AGGCTCAACGACTTTGAAAAAATAAATAAAGCTCATTTAATCAG
* ** * *
21109899 AGGCTCAATGACTTTG-AAAAATAAATATGGCTCCTTTAAACAG
1 AGGCTCAACGACTTTGAAAAAATAAATAAAGCTCATTTAATCAG
* ** *
21109942 AGACTCAATAAC-TTGAAAAAATAAATAAAGCT-TTTTAAGT-AG
1 AGGCTCAACGACTTTGAAAAAATAAATAAAGCTCATTTAA-TCAG
* * *
21109984 AGGCTCAACGATTTTGAAAAAAATAAATAAAGCTCATCTAATTAG
1 AGGCTCAACGACTTTG-AAAAAATAAATAAAGCTCATTTAATCAG
* * ** * *
21110029 AGGCACAATGACTTTGGGAAAATAAA-AATAACTCATCTAA-CAG
1 AGGCTCAACGACTTTGAAAAAATAAATAA-AGCTCATTTAATCAG
* * ** *
21110072 AAGCTCAATGACTTTGAAAAAATAAATATGGCTCATCTAAAT-AG
1 AGGCTCAACGACTTTGAAAAAATAAATAAAGCTCAT-TTAATCAG
* * * * * *
21110116 AGACTCAATGACTTTAAAAAAAATAAATAAAGCTCCTTTAAACAA
1 AGGCTCAACGACTTT-GAAAAAATAAATAAAGCTCATTTAATCAG
* * *
21110161 AGGGTCAATGACTTTTGAAAAAAATAAGTAAAGCTCATT
1 AGGCTCAACGAC-TTTG-AAAAAATAAATAAAGCTCATT
21110200 AACAATCATG
Statistics
Matches: 560, Mismatches: 105, Indels: 58
0.77 0.15 0.08
Matches are distributed among these distances:
42 21 0.04
43 216 0.39
44 183 0.33
45 118 0.21
46 22 0.04
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (44 bp):
AGGCTCAACGACTTTGAAAAAATAAATAAAGCTCATTTAATCAG
Found at i:21109682 original size:131 final size:131
Alignment explanation
Indices: 21109461--21110182 Score: 523
Period size: 131 Copynumber: 5.5 Consensus size: 131
21109451 CTCTAAACAA
* ** * * *
21109461 AGGCTCAATGACTTT-AAAAAAATAAATACGGCTCCTCTAAAT-AAAGGCTCAA-TAACTTTGAA
1 AGGCTCAACGACTTTGAAAAAAATAAATAAAGCTCCT-TTAATCAGAGGCT-AACTGACTTTG-A
* * * * * * * *
21109523 AAAATAAATAAAGCTCATT-T-AATCAGAGGCTTAATAAGTTTAGAAAATAAATAAAGATCATCT
63 AAAATAAATAAGGTTC-TTCTAAAT-AGAGGCTCAATAACTTTAAAAAATAAATAAAGCTCTTTT
21109586 AATCAG
126 AATCAG
* * *
21109592 AGGCTCAACGACTTTG-AAAAAATAAATAAAGCTTCTTTAATCAGAGGCTTACTGATTTTGAAAA
1 AGGCTCAACGACTTTGAAAAAAATAAATAAAGCTCCTTTAATCAGAGGCTAACTGACTTTG-AAA
* * * *
21109656 AATAAATACGGTTTTTCTAAATAGAGGCTCAATGACTTTAGAAAAATAAA-AAAGCTCTTTTAAA
65 AATAAATAAGGTTCTTCTAAATAGAGGCTCAATAACTTTA-AAAAATAAATAAAGCTCTTTTAAT
21109720 CAG
129 CAG
* * * * *
21109723 AAGCTTAACGACTTTGAAAAAAATAAATAAAGCTCCTCTAATCAGAAGCTCAAC-AACTTTGAAA
1 AGGCTCAACGACTTTGAAAAAAATAAATAAAGCTCCTTTAATCAGAGGCT-AACTGACTTTGAAA
* * * * **
21109787 AATAAAAAAAGCTCATCT-AATCAGAGGCTCAACGACTTTGAAAAAAATAAATAAAGCTCTTTTA
65 AATAAATAAGGTTCTTCTAAAT-AGAGGCTCAATAACTTT--AAAAAATAAATAAAGCTCTTTTA
*
21109851 ATAAG
127 ATCAG
* * * * *
21109856 AGGTTTAACAACTTTG--AAAATTAAATAAAGCTCCTTTAATCAAAGGCTCAA-TGACTTTGAAA
1 AGGCTCAACGACTTTGAAAAAAATAAATAAAGCTCCTTTAATCAGAGGCT-AACTGACTTTGAAA
* * * * *
21109918 AATAAATATGGCTCCTT-TAAACAGAGACTCAATAACTTGAAAAAATAAATAAAGCT-TTTTAAG
65 AATAAATAAGG-TTCTTCTAAATAGAGGCTCAATAACTTTAAAAAATAAATAAAGCTCTTTTAA-
21109981 T-AG
128 TCAG
* * * * *
21109984 AGGCTCAACGATTTTGAAAAAAATAAATAAAGCTCATCTAATTAGAGGC-ACAATGACTTTGGGA
1 AGGCTCAACGACTTTGAAAAAAATAAATAAAGCTCCTTTAATCAGAGGCTA-ACTGACTTT--GA
* * * * * * ** *
21110048 AAATAAAAATAA--CTCATCT-AACAGAAGCTCAATGACTTTGAAAAAATAAATATGGCTCATCT
63 AAA-ATAAATAAGGTTCTTCTAAATAGAGGCTCAATAACTTT-AAAAAATAAATAAAGCTC-TTT
*
21110110 AAAT-AG
125 TAATCAG
* * * * * *
21110116 AGACTCAATGACTTTAAAAAAAATAAATAAAGCTCCTTTAAACAAAGGGTCAA-TGACTTTTGAA
1 AGGCTCAACGACTTTGAAAAAAATAAATAAAGCTCCTTTAATCAGAGGCT-AACTGAC-TTTGAA
21110180 AAA
64 AAA
21110183 AATAAGTAAA
Statistics
Matches: 472, Mismatches: 89, Indels: 61
0.76 0.14 0.10
Matches are distributed among these distances:
128 21 0.04
129 19 0.04
130 62 0.13
131 214 0.45
132 110 0.23
133 45 0.10
134 1 0.00
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (131 bp):
AGGCTCAACGACTTTGAAAAAAATAAATAAAGCTCCTTTAATCAGAGGCTAACTGACTTTGAAAA
ATAAATAAGGTTCTTCTAAATAGAGGCTCAATAACTTTAAAAAATAAATAAAGCTCTTTTAATCA
G
Found at i:21109693 original size:88 final size:88
Alignment explanation
Indices: 21109461--21110198 Score: 642
Period size: 88 Copynumber: 8.4 Consensus size: 88
21109451 CTCTAAACAA
* * * *
21109461 AGGCTCAATGACTTTAAAAAAATAAATACGGCTCCTCTAAATAAAGGCTCAATAACTTTGAAAAA
1 AGGCTCAATGACTTTGAAAAAATAAATAAGGCTCATCTAAATAGAGGCTCAATAACTTTGAAAAA
21109526 ATAAATAAAGCTCATTTAATCAG
66 ATAAATAAAGCTCATTTAATCAG
* * * * * * **
21109549 AGGCTTAATAAGTTT-AGAAAATAAATAAAGATCATCT-AATCAGAGGCTCAACGACTTTGAAAA
1 AGGCTCAATGACTTTGAAAAAATAAATAAGGCTCATCTAAAT-AGAGGCTCAATAACTTTGAAAA
21109612 AATAAATAAAGCTTC-TTTAATCAG
65 AATAAATAAAGC-TCATTTAATCAG
* * * * * ** *
21109636 AGGCTTACTGATTTTGAAAAAATAAATACGGTTTTTCTAAATAGAGGCTCAATGACTTT-AGAAA
1 AGGCTCAATGACTTTGAAAAAATAAATAAGGCTCATCTAAATAGAGGCTCAATAACTTTGA-AAA
* *
21109700 AATAAA-AAAGCTCTTTTAAACAG
65 AATAAATAAAGCTCATTTAATCAG
* * * * * * *
21109723 AAGCTTAACGACTTTGAAAAAAATAAATAAAGCTCCTCT-AATCAGAAGCTCAACAACTTTG-AA
1 AGGCTCAATGACTTTG-AAAAAATAAATAAGGCTCATCTAAAT-AGAGGCTCAATAACTTTGAAA
* *
21109786 AAATAAAAAAAGCTCATCTAATCAG
64 AAATAAATAAAGCTCATTTAATCAG
* * * * * * *
21109811 AGGCTCAACGACTTTGAAAAAAATAAATAAAGCTC-TTTTAATAAGAGGTTTAACAACTTTG-AA
1 AGGCTCAATGACTTTG-AAAAAATAAATAAGGCTCATCTAAAT-AGAGGCTCAATAACTTTGAAA
* * *
21109874 AATTAAATAAAGCTCCTTTAATCAA
64 AAATAAATAAAGCTCATTTAATCAG
* * * * *
21109899 AGGCTCAATGACTTTG-AAAAATAAATATGGCTCCTTTAAACAGAGACTCAATAAC-TTGAAAAA
1 AGGCTCAATGACTTTGAAAAAATAAATAAGGCTCATCTAAATAGAGGCTCAATAACTTTGAAAAA
*
21109962 ATAAATAAAGCT-TTTTAAGT-AG
66 ATAAATAAAGCTCATTTAA-TCAG
* * * * * * **
21109984 AGGCTCAACGATTTTGAAAAAAATAAATAAAGCTCATCTAATTAGAGGCACAATGACTTTGGGAA
1 AGGCTCAATGACTTTG-AAAAAATAAATAAGGCTCATCTAAATAGAGGCTCAATAACTTTGAAAA
* *
21110049 AATAAA-AATAACTCATCTAA-CAG
65 AATAAATAA-AGCTCATTTAATCAG
* * * * *
21110072 AAGCTCAATGACTTTGAAAAAATAAATATGGCTCATCTAAATAGAGACTCAATGACTTTAAAAAA
1 AGGCTCAATGACTTTGAAAAAATAAATAAGGCTCATCTAAATAGAGGCTCAATAACTTT-GAAAA
* * *
21110137 AATAAATAAAGCTCCTTTAAACAA
65 AATAAATAAAGCTCATTTAATCAG
* * *
21110161 AGGGTCAATGACTTTTGAAAAAAATAAGTAAAGCTCAT
1 AGGCTCAATGAC-TTTG-AAAAAATAAATAAGGCTCAT
21110199 TAACAATCAT
Statistics
Matches: 528, Mismatches: 97, Indels: 47
0.79 0.14 0.07
Matches are distributed among these distances:
85 23 0.04
86 46 0.09
87 184 0.35
88 233 0.44
89 21 0.04
90 4 0.01
91 17 0.03
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (88 bp):
AGGCTCAATGACTTTGAAAAAATAAATAAGGCTCATCTAAATAGAGGCTCAATAACTTTGAAAAA
ATAAATAAAGCTCATTTAATCAG
Found at i:21110308 original size:17 final size:18
Alignment explanation
Indices: 21110288--21110321 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
21110278 CGCAATTTAA
21110288 AGATTCACAAAA-TTTTT
1 AGATTCACAAAACTTTTT
*
21110305 AGATTCATAAAACTTTT
1 AGATTCACAAAACTTTT
21110322 CAGCTTTGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (18 bp):
AGATTCACAAAACTTTTT
Found at i:21110792 original size:42 final size:42
Alignment explanation
Indices: 21110715--21110799 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
21110705 TTTCACATCT
21110715 GAGTTCAAAGTTCTTATTCAAAAATTTAAAGATTCACACCCAA
1 GAGTTCAAAGTTCTTATT-AAAAATTTAAAGATTCACACCCAA
* * *
21110758 GAGTTCAAAGTTTCTTATT-ATAGTTTAAAGATTCACATCCAA
1 GAGTTCAAAG-TTCTTATTAAAAATTTAAAGATTCACACCCAA
21110800 TAAATTTTAG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 20 0.53
43 10 0.26
44 8 0.21
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (42 bp):
GAGTTCAAAGTTCTTATTAAAAATTTAAAGATTCACACCCAA
Found at i:21111861 original size:17 final size:17
Alignment explanation
Indices: 21111820--21111861 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
21111810 CATTTTACAC
21111820 TTTCTTTTATTTCATTT
1 TTTCTTTTATTTCATTT
21111837 TCATT-TTTT-TTTCATTT
1 T--TTCTTTTATTTCATTT
21111854 TTTCTTTT
1 TTTCTTTT
21111862 CCAATTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
15 2 0.09
16 4 0.18
17 10 0.45
18 4 0.18
19 2 0.09
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTCTTTTATTTCATTT
Found at i:21116408 original size:25 final size:26
Alignment explanation
Indices: 21116380--21116439 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 26
21116370 TTCACTTAGG
21116380 AATTTTATAGAAATTT-ATCATTTGA-
1 AATTTTATA-AAATTTCATCATTTGAT
21116405 AATTTCTA-AAAATTTCATCATTTGAT
1 AATTT-TATAAAATTTCATCATTTGAT
21116431 AATTATTAT
1 AATT-TTAT
21116440 TTATTCTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
24 6 0.20
25 15 0.50
26 8 0.27
27 1 0.03
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (26 bp):
AATTTTATAAAATTTCATCATTTGAT
Found at i:21116465 original size:205 final size:206
Alignment explanation
Indices: 21116081--21116475 Score: 446
Period size: 205 Copynumber: 1.9 Consensus size: 206
21116071 AATCAAAAAT
* * ** *
21116081 TTTTTGTTTGGAAAAAAATATAATTATTTTTATTAAAATTTCATTTAAATTATTTTACCATTTGG
1 TTTTTGTTTGGAAAAAAATATAATTATTGTTATTAAAATTTCATCTAAATTATTCCACCATTTGA
*
21116146 GACAAATCTAGAGAAAATTTTCACTTAGAGATTTCTTAAAAATTTACTATTTAAAATTTCTAAAA
66 GACAAATCTAGAAAAAATTTTCACTTAGAGATTTCTTAAAAATTTACTATTTAAAATTTCTAAAA
* ***
21116211 ATCTCGTCTTTAAGTAATAAGTATTTTTCTAAATTTTTATTAATATTTTTATCTTTTATTTTTTT
131 ATCTCATCTTTAAGTAATAAGTATTTTTCTAAATAAATATTAATATTTTTATCTTTTATTTTTTT
21116276 ATTTTTATCCC
196 ATTTTTATCCC
* * *
21116287 TTTTTGTTT-GAAATAAATATTAATTATTGTTATTGAAA-TT-ATCTAAATTATTCCATCATTTG
1 TTTTTGTTTGGAAAAAAATA-TAATTATTGTTATTAAAATTTCATCTAAATTATTCCACCATTTG
* * *
21116349 AGACAAATTTAGACAAAAATTTTCACTTAG-GAATTT-TATAGAAATTTA-TCATTTGAAATTTC
65 AGACAAATCTAGA-AAAAATTTTCACTTAGAG-ATTTCT-TAAAAATTTACT-ATTTAAAATTTC
* * * * * *
21116411 TAAAAATTTCATCATTTGA-TAATTATTATTTATTCTTAAA-AAATATTTTATTTTTTTTATCTT
126 TAAAAATCTCATC-TTTAAGTAATAAGTATTT-TTC-TAAATAAATA--TTAATATTTTTATCTT
21116474 TT
186 TT
21116476 TTTAATTTAA
Statistics
Matches: 157, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
204 32 0.20
205 71 0.45
206 34 0.22
207 4 0.03
208 16 0.10
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.50
Consensus pattern (206 bp):
TTTTTGTTTGGAAAAAAATATAATTATTGTTATTAAAATTTCATCTAAATTATTCCACCATTTGA
GACAAATCTAGAAAAAATTTTCACTTAGAGATTTCTTAAAAATTTACTATTTAAAATTTCTAAAA
ATCTCATCTTTAAGTAATAAGTATTTTTCTAAATAAATATTAATATTTTTATCTTTTATTTTTTT
ATTTTTATCCC
Found at i:21126721 original size:6 final size:6
Alignment explanation
Indices: 21126710--21126734 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
21126700 AGTTAGCTAA
21126710 TATAAT TATAAT TATAAT TATAAT T
1 TATAAT TATAAT TATAAT TATAAT T
21126735 GTAACTAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TATAAT
Found at i:21130830 original size:20 final size:20
Alignment explanation
Indices: 21130801--21130841 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
21130791 TTAAGTTTGT
21130801 AGAGTCAGTGAGAGGTAAAG
1 AGAGTCAGTGAGAGGTAAAG
* * *
21130821 AGAGTTAGTGGGAGGTGAAG
1 AGAGTCAGTGAGAGGTAAAG
21130841 A
1 A
21130842 TTAGGCTATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.02, G:0.44, T:0.17
Consensus pattern (20 bp):
AGAGTCAGTGAGAGGTAAAG
Found at i:21131056 original size:63 final size:63
Alignment explanation
Indices: 21130989--21131119 Score: 149
Period size: 63 Copynumber: 2.1 Consensus size: 63
21130979 ATTTCTAGCA
* * * *
21130989 AAAAATGCCTTGAATAA-TCTTGTCAATAAATTTTTATGAAAGATTATTGAAGATA-TTTTTGTC
1 AAAAATACCTTGAATAATTC-T-TCAATAAATTTTTACGAAAGATTATTAAAGATATTTTTTATC
* * ** *
21131052 AAAAATACCTTTAATAATTCTTCTATAAATTTTTACGAGGGATTATTAAAGGTATTTTTTATC
1 AAAAATACCTTGAATAATTCTTCAATAAATTTTTACGAAAGATTATTAAAGATATTTTTTATC
21131115 AAAAA
1 AAAAA
21131120 CACTTTCAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
62 27 0.47
63 28 0.49
64 2 0.04
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (63 bp):
AAAAATACCTTGAATAATTCTTCAATAAATTTTTACGAAAGATTATTAAAGATATTTTTTATC
Found at i:21131096 original size:62 final size:62
Alignment explanation
Indices: 21131014--21131363 Score: 211
Period size: 62 Copynumber: 5.6 Consensus size: 62
21131004 AATCTTGTCA
* *
21131014 ATAAATTTTTATGAAAGATTATTGAAGATATTTTTGTCAAAAATACCTTTAATAAT-TCTTCT
1 ATAAATTTTTATGAGAGATTATTGAAGATATTTTTGTCAAAAATACCTTTAATAATCCCTT-T
* * * * * *
21131076 ATAAATTTTTACGAGGGATTATTAAAGGTATTTTTTATCAAAAACA-CTTTCAATAATCCCTTT
1 ATAAATTTTTATGAGAGATTATTGAAGATA-TTTTTGTCAAAAATACCTTT-AATAATCCCTTT
* * * * *
21131139 -CAAATTTTT-TTAGGAGATTATTGAAAACATTTTTGGTC-AAAATCACTTTTAATAATACCCTT
1 ATAAATTTTTATGA-GAGATTATTGAAGATATTTTT-GTCAAAAAT-ACCTTTAATAAT-CCCTT
*
21131201 A
62 T
* * *
21131202 ATAAATTTTTATGAGAGATTATTGAATGCAT-TTTTGGTCAAAAGT-GCTTTCAATAA-CCCTTT
1 ATAAATTTTTATGAGAGATTATTGAA-G-ATATTTTTGTCAAAAATACCTTT-AATAATCCCTTT
* * * * * * * *
21131264 -TCAAATTTTGT-TAAAGGGATTATTGAA-AGATTTTTGAGCAAAAACATCATCAATAATCCTCT
1 AT-AAATTTT-TAT-GAGAGATTATTGAAGATATTTTTG-TCAAAAATACCTTTAATAATCC-CT
*
21131326 TA
61 TT
* * *
21131328 ATAAATTTTTATAAG-GTATTATTGAATATGTTTTTG
1 ATAAATTTTTATGAGAG-ATTATTGAAGATATTTTTG
21131364 GGTAAAAATG
Statistics
Matches: 220, Mismatches: 42, Indels: 50
0.71 0.13 0.16
Matches are distributed among these distances:
60 1 0.00
61 16 0.07
62 81 0.37
63 61 0.28
64 49 0.22
65 11 0.05
66 1 0.00
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.42
Consensus pattern (62 bp):
ATAAATTTTTATGAGAGATTATTGAAGATATTTTTGTCAAAAATACCTTTAATAATCCCTTT
Found at i:21131209 original size:126 final size:127
Alignment explanation
Indices: 21131029--21131338 Score: 307
Period size: 126 Copynumber: 2.5 Consensus size: 127
21131019 TTTTTATGAA
* * * * *
21131029 AGATTATTGAAGATATTTTT-GTCAAAAAT-ACCTTTAATAAT-TCTTCTATAAATTTTTACGAG
1 AGATTATTGAAAACATTTTTGGTC-AAAATCACTTTTAATAATCCCTT-AATAAATTTTTACGAG
* * * *
21131091 GGATTATTAAAGGTATTTTTTATCAAAAACACTTTCAATAATCCC-TTTCAAATTTT-TT-TAGG
64 AGATTATTAAAGGCATTTTTGATCAAAAACACTTTCAATAA-CCCTTTTCAAATTTTGTTAAAGG
*
21131153 AGATTATTGAAAACATTTTTGGTCAAAATCACTTTTAATAATACCCTTAATAAATTTTTATGAGA
1 AGATTATTGAAAACATTTTTGGTCAAAATCACTTTTAATAAT-CCCTTAATAAATTTTTACGAGA
* * * ***
21131218 GATTATTGAATGCATTTTTGGTCAAAAGTGCTTTCAATAACCCTTTTCAAATTTTGTTAAAGG
65 GATTATTAAAGGCATTTTTGATCAAAAACACTTTCAATAACCCTTTTCAAATTTTGTTAAAGG
* * * *
21131281 -GATTATTG-AAAGATTTTTGAG-CAAAAACA-TCATCAATAATCCTCTTAATAAATTTTTA
1 AGATTATTGAAAACATTTTTG-GTCAAAATCACT-TTTAATAATCC-CTTAATAAATTTTTA
21131339 TAAGGTATTA
Statistics
Matches: 156, Mismatches: 20, Indels: 18
0.80 0.10 0.09
Matches are distributed among these distances:
124 23 0.15
125 20 0.13
126 96 0.62
127 14 0.09
128 3 0.02
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.41
Consensus pattern (127 bp):
AGATTATTGAAAACATTTTTGGTCAAAATCACTTTTAATAATCCCTTAATAAATTTTTACGAGAG
ATTATTAAAGGCATTTTTGATCAAAAACACTTTCAATAACCCTTTTCAAATTTTGTTAAAGG
Found at i:21131362 original size:126 final size:126
Alignment explanation
Indices: 21131122--21131390 Score: 293
Period size: 126 Copynumber: 2.1 Consensus size: 126
21131112 ATCAAAAACA
* *
21131122 CTTTCAATAATCCC-TTTCAAATTTTTTTAGGAGATTATTGAAAACATTTTTGGTCAAAATCACT
1 CTTTCAATAA-CCCTTTTCAAATTTTTTAAGGAGATTATTGAAAACATTTTTGGTCAAAAACACT
* * * * *
21131186 TTTAATAATACCCTTAATAAATTTTTATGAGAGATTATTGAATGCATTTTT-GGTCAAAAGTG
65 ATCAATAATACCCTTAATAAATTTTTATAAGAGATTATTGAATACATTTTTGGGT-AAAAATG
*
21131248 CTTTCAATAACCCTTTTCAAATTTTGTTAAAGG-GATTATTG-AAAGATTTTTGAG-CAAAAACA
1 CTTTCAATAACCCTTTTCAAATTTT-TT-AAGGAGATTATTGAAAACATTTTTG-GTCAAAAACA
**
21131310 -TCATCAATAAT-CCTCTTAATAAATTTTTATAAG-GTATTATTGAATATGTTTTTGGGTAAAAA
63 CT-ATCAATAATACC-CTTAATAAATTTTTATAAGAG-ATTATTGAATACATTTTTGGGTAAAAA
21131372 TG
125 TG
* *
21131374 CATTTAAATAATCCTTT
1 C-TTTCAATAACCCTTT
21131391 CAATTATGAC
Statistics
Matches: 122, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
125 7 0.06
126 85 0.70
127 27 0.22
128 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (126 bp):
CTTTCAATAACCCTTTTCAAATTTTTTAAGGAGATTATTGAAAACATTTTTGGTCAAAAACACTA
TCAATAATACCCTTAATAAATTTTTATAAGAGATTATTGAATACATTTTTGGGTAAAAATG
Found at i:21131469 original size:62 final size:62
Alignment explanation
Indices: 21131401--21131615 Score: 193
Period size: 62 Copynumber: 3.4 Consensus size: 62
21131391 CAATTATGAC
* *
21131401 AAAAAATGCCTTCAATAATCCCTTTCAAATTTTTTTAAAAGATTATTGAAGG-TTGTTTTGGT
1 AAAAAATGCCTTCAATAATCCCTTTCAAATTTTTTTAAAAGATTATTGAAGGCAT-TTTTAGT
* * ** **
21131463 AAAAAATACCTTTAATAATCCTCTCAACAAAATTTTTTGT-ATGGATTATTGAAGGCACATTTTT
1 AAAAAATGCCTTCAATAATCC-CT-TTC-AAATTTTTT-TAAAAGATTATTGAAGG--CATTTTT
21131527 AG-
60 AGT
* * * * * *
21131529 ACAAAAACGTCTTTAATAATCCTTTTCAAATTTTTTCAAGAGATTATTGAAGGCATTTTTAGT
1 A-AAAAATGCCTTCAATAATCCCTTTCAAATTTTTTTAAAAGATTATTGAAGGCATTTTTAGT
*
21131592 AAAAAATGTCTTCAATAATTCCCT
1 AAAAAATGCCTTCAATAA-TCCCT
21131616 CGATAAATTT
Statistics
Matches: 122, Mismatches: 20, Indels: 21
0.75 0.12 0.13
Matches are distributed among these distances:
62 43 0.35
63 7 0.06
64 23 0.19
65 23 0.19
66 3 0.02
67 22 0.18
68 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (62 bp):
AAAAAATGCCTTCAATAATCCCTTTCAAATTTTTTTAAAAGATTATTGAAGGCATTTTTAGT
Found at i:21131624 original size:64 final size:62
Alignment explanation
Indices: 21131401--21131674 Score: 207
Period size: 64 Copynumber: 4.3 Consensus size: 62
21131391 CAATTATGAC
* * * *
21131401 AAAAAATGCCTTCAATAATCCCTTTCAAATTTTTTTAAAAGATTATTGAAGG-TTGTTTTGGT
1 AAAAAATGCCTTCAATAATCCCTATCAAATTTTTTTAAGAGATTATTGAAGGCAT-TTTTAGT
* * * *
21131463 AAAAAATACCTTTAATAATCCTCTCAACAAAATTTTTTGTATG-GATTATTGAAGGCACATTTTT
1 AAAAAATGCCTTCAATAATCC-CT-ATC-AAATTTTTT-TAAGAGATTATTGAAGG--CATTTTT
21131527 AG-
60 AGT
* * * * * *
21131529 ACAAAAACGTCTTTAATAATCCTTTTCAAATTTTTTCAAGAGATTATTGAAGGCATTTTTAGT
1 A-AAAAATGCCTTCAATAATCCCTATCAAATTTTTTTAAGAGATTATTGAAGGCATTTTTAGT
* * * * *
21131592 AAAAAATGTCTTCAATAATTCCCTCGAT-AAATTTTTATGAG-GAATTATTGAAGGTATTTTTGG
1 AAAAAATGCCTTCAATAA-TCCCT--ATCAAATTTTTTTAAGAG-ATTATTGAAGGCATTTTTAG
*
21131655 C
62 T
* *
21131656 CAAAAATGCTTTCAATAAT
1 AAAAAATGCCTTCAATAAT
21131675 TCTTTCAATA
Statistics
Matches: 169, Mismatches: 29, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
62 43 0.25
63 11 0.07
64 65 0.38
65 23 0.14
66 4 0.02
67 22 0.13
68 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (62 bp):
AAAAAATGCCTTCAATAATCCCTATCAAATTTTTTTAAGAGATTATTGAAGGCATTTTTAGT
Found at i:21131686 original size:64 final size:65
Alignment explanation
Indices: 21131400--21131705 Score: 174
Period size: 64 Copynumber: 4.8 Consensus size: 65
21131390 TCAATTATGA
* * * ** *
21131400 CAAAAAATGCCTTCAATAA-TCCCT--TTCAAATTTTTT-TAAAAGATTATTGAAGG-TTGTTTT
1 CAAAAAATGTCTTCAATAATTCCCTCAATAAAATTTTTTGTAGGA-ATTATTGAAGGCAT-TTTT
*
21131460 GG
64 AG
* ** * *
21131462 TAAAAAATACCTTTAATAA-TCCTCTCAACAAAATTTTTTGTATGG-ATTATTGAAGGCACATTT
1 CAAAAAATGTCTTCAATAATTCC-CTCAATAAAATTTTTTGTA-GGAATTATTGAAGG--CATTT
21131525 TTAG
62 TTAG
* * ** * * *
21131529 -ACAAAAACGTCTTTAATAA-T-CCT-TTTCAAATTTTTT-CAAGAGATTATTGAAGGCATTTTT
1 CA-AAAAATGTCTTCAATAATTCCCTCAATAAAATTTTTTGTAGGA-ATTATTGAAGGCATTTTT
21131589 AG
64 AG
* * * *
21131591 TAAAAAATGTCTTCAATAATTCCCTCGAT-AAATTTTTATG-AGGAATTATTGAAGGTATTTTTG
1 CAAAAAATGTCTTCAATAATTCCCTCAATAAAATTTTT-TGTAGGAATTATTGAAGGCATTTTTA
21131654 G
65 G
* ** *
21131655 CCAAAAATG-CTTTCAATAATTCTTTCAATAAAATTTTTTGTATGAATTATT
1 CAAAAAATGTC-TTCAATAATTCCCTCAATAAAATTTTTTGTAGGAATTATT
21131706 AAAAACGTTT
Statistics
Matches: 192, Mismatches: 32, Indels: 37
0.74 0.12 0.14
Matches are distributed among these distances:
62 44 0.23
63 6 0.03
64 73 0.38
65 44 0.23
66 4 0.02
67 20 0.10
68 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.41
Consensus pattern (65 bp):
CAAAAAATGTCTTCAATAATTCCCTCAATAAAATTTTTTGTAGGAATTATTGAAGGCATTTTTAG
Found at i:21139544 original size:33 final size:33
Alignment explanation
Indices: 21139480--21139544 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 33
21139470 CAAGCCCTAC
* * *
21139480 AAAATAAACAAAAAAATAAAAAAAATCAGTTTTT
1 AAAAAAAAAAAAAAAAGAAAAAAAA-CAGTTTTT
21139514 AAAAAAAAAAAAAAAAGAAAAGAAAA-AGTTT
1 AAAAAAAAAAAAAAAAGAAAA-AAAACAGTTT
21139545 AAAAACCACA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 5 0.19
34 18 0.67
35 4 0.15
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.17
Consensus pattern (33 bp):
AAAAAAAAAAAAAAAAGAAAAAAAACAGTTTTT
Found at i:21140725 original size:28 final size:28
Alignment explanation
Indices: 21140686--21140788 Score: 68
Period size: 28 Copynumber: 3.6 Consensus size: 28
21140676 TAAAAAGTAT
** *
21140686 AAACCCTAAAACCTTAACTCTAAAATCA
1 AAACCCTAAAACCAAAACCCTAAAATCA
*
21140714 AAACCCGT-AAACCAAAACCCTAAAATGA
1 AAACCC-TAAAACCAAAACCCTAAAATCA
* **
21140742 AAACTC-AAAACTTC-AAACCCTTGAATCTA
1 AAACCCTAAAAC--CAAAACCCTAAAATC-A
21140771 AAACCCTTAAAATCCAAA
1 AAACCC-TAAAA-CCAAA
21140789 CTCCAAAACG
Statistics
Matches: 57, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
27 4 0.07
28 37 0.65
29 8 0.14
30 1 0.02
31 6 0.11
32 1 0.02
ACGTcount: A:0.50, C:0.28, G:0.03, T:0.18
Consensus pattern (28 bp):
AAACCCTAAAACCAAAACCCTAAAATCA
Found at i:21140744 original size:14 final size:14
Alignment explanation
Indices: 21140686--21140789 Score: 52
Period size: 14 Copynumber: 7.3 Consensus size: 14
21140676 TAAAAAGTAT
* *
21140686 AAACCCTAAAACCT
1 AAACCCTAAAATCA
* *
21140700 TAACTCTAAAATCA
1 AAACCCTAAAATCA
*
21140714 AAACCCGT-AAACCA
1 AAACCC-TAAAATCA
*
21140728 AAACCCTAAAATGA
1 AAACCCTAAAATCA
*
21140742 AAACTC-AAAACTTC-
1 AAACCCTAAAA--TCA
**
21140756 AAACCCTTGAATCTA
1 AAACCCTAAAATC-A
*
21140771 AAACCCTTAAAATCC
1 AAACCC-TAAAATCA
21140786 AAAC
1 AAAC
21140790 TCCAAAACGT
Statistics
Matches: 65, Mismatches: 17, Indels: 15
0.67 0.18 0.15
Matches are distributed among these distances:
13 7 0.11
14 39 0.60
15 14 0.22
16 5 0.08
ACGTcount: A:0.50, C:0.29, G:0.03, T:0.18
Consensus pattern (14 bp):
AAACCCTAAAATCA
Found at i:21147644 original size:15 final size:16
Alignment explanation
Indices: 21147624--21147657 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
21147614 CATGGTGAGT
21147624 AAAAAAAAT-CAAATA
1 AAAAAAAATACAAATA
*
21147639 AAAAAAAATAGAAATA
1 AAAAAAAATACAAATA
21147655 AAA
1 AAA
21147658 GTGGCTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAAAAAATACAAATA
Found at i:21148343 original size:31 final size:31
Alignment explanation
Indices: 21148285--21148344 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
21148275 TAGTTGACAC
* *
21148285 ATAAGCCTAGATTATTTGGCACCAATGAAAT
1 ATAAGCCTAGATTATCTAGCACCAATGAAAT
* * *
21148316 ATAAGCTTAGTTTATCTAGCACTAATGAA
1 ATAAGCCTAGATTATCTAGCACCAATGAA
21148345 GTTTTAAGCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (31 bp):
ATAAGCCTAGATTATCTAGCACCAATGAAAT
Found at i:21148359 original size:32 final size:31
Alignment explanation
Indices: 21148286--21148398 Score: 95
Period size: 32 Copynumber: 3.6 Consensus size: 31
21148276 AGTTGACACA
* * * * *
21148286 TAAGCCTAGATTATTTGGCACCAATGAAATA
1 TAAGCCTAGTTTATCTAGCACTAATGAAATT
* *
21148317 TAAGCTTAGTTTATCTAGCACTAATGAAGTTT
1 TAAGCCTAGTTTATCTAGCACTAATGAA-ATT
*
21148349 TAAGCCTAGTTTAGT-TGGC-CTTTAATGAAATT
1 TAAGCCTAGTTTA-TCTAGCAC--TAATGAAATT
*
21148381 TAAGCCCAGTTTATCTAG
1 TAAGCCTAGTTTATCTAG
21148399 TCATCAATAA
Statistics
Matches: 65, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
31 25 0.38
32 32 0.49
33 8 0.12
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (31 bp):
TAAGCCTAGTTTATCTAGCACTAATGAAATT
Found at i:21148793 original size:41 final size:44
Alignment explanation
Indices: 21148748--21148850 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 44
21148738 TCATGAAGGG
*
21148748 GACATTTGCATTTGCATCACTTGCATTTGCA-C-CAC-AAGAAA
1 GACATTTGCATTTGCATCACTTGCATTTGAATCGCACTAAGAAA
* * *
21148789 GACATTAGCATTTGCATCATTTGTATTTGAATTCGCACTAAGAAA
1 GACATTTGCATTTGCATCACTTGCATTTGAA-TCGCACTAAGAAA
21148834 -A-ATTTGCATTTGCATCA
1 GACATTTGCATTTGCATCA
21148851 TGGCATCTGC
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
41 27 0.51
43 16 0.30
44 4 0.08
45 6 0.11
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (44 bp):
GACATTTGCATTTGCATCACTTGCATTTGAATCGCACTAAGAAA
Found at i:21149152 original size:21 final size:21
Alignment explanation
Indices: 21149126--21149165 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
21149116 TGAGATTTGG
21149126 TAAGACCTCCGAGCATAATAT
1 TAAGACCTCCGAGCATAATAT
*
21149147 TAAGACCTTCGAGCATAAT
1 TAAGACCTCCGAGCATAAT
21149166 TTTGATTCGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (21 bp):
TAAGACCTCCGAGCATAATAT
Found at i:21149380 original size:37 final size:37
Alignment explanation
Indices: 21149196--21149616 Score: 241
Period size: 37 Copynumber: 11.4 Consensus size: 37
21149186 CGATCAATTT
* * *
21149196 TTTATTTTTTGACTTACGGTGTTATCCCGGTTGATTC
1 TTTACTTTTTGACTTACGGTGTTATCTCGGTCGATTC
* * ** * * * *
21149233 -TTA-ATTTCGACTCGCAGTGTTATC-CTAGTTG-TTT
1 TTTACTTTTTGACTTACGGTGTTATCTC-GGTCGATTC
* * * * * *
21149267 TCTTACTTTTTTAACTCACGGTATTATCTCGATCGTTTT
1 T-TTAC-TTTTTGACTTACGGTGTTATCTCGGTCGATTC
* *
21149306 TTTACTTTTTTAACTCACGGTGTTATC-CTGGTCGATTC
1 TTTAC-TTTTTGACTTACGGTGTTATCTC-GGTCGATTC
* * *
21149344 TTTACTATTTGACTTACGGTGTTGTCTCGGTTGATTC
1 TTTACTTTTTGACTTACGGTGTTATCTCGGTCGATTC
* * * *
21149381 TTTA-TTTTGTGATTTACGGTGTTGTCTCGATTGATTC
1 TTTACTTTT-TGACTTACGGTGTTATCTCGGTCGATTC
** * * *
21149418 TTTACTTTTCAACTTACGGTGTTATCCCGATCGATTT
1 TTTACTTTTTGACTTACGGTGTTATCTCGGTCGATTC
* *
21149455 TTTACTTATTT--TTTACGGTGTTATCTCGGTTGATTC
1 TTTACTT-TTTGACTTACGGTGTTATCTCGGTCGATTC
* ** * * *
21149491 CTTACTTTTTGACTCGCGATGTTATCCCCGTCGATTC
1 TTTACTTTTTGACTTACGGTGTTATCTCGGTCGATTC
** *
21149528 TCCA-TTGTTCGACTTACGGTGTTATC-CTGGTCGATTC
1 TTTACTT-TTTGACTTACGGTGTTATCTC-GGTCGATTC
* * ** * * * *
21149565 TTCACTGTTCAACTTACGATGTTGTCTCGATCCATTC
1 TTTACTTTTTGACTTACGGTGTTATCTCGGTCGATTC
21149602 TTTACTTTTTGACTT
1 TTTACTTTTTGACTT
21149617 GTGGTGTTGT
Statistics
Matches: 298, Mismatches: 68, Indels: 36
0.74 0.17 0.09
Matches are distributed among these distances:
34 3 0.01
35 23 0.08
36 38 0.13
37 167 0.56
38 62 0.21
39 5 0.02
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.48
Consensus pattern (37 bp):
TTTACTTTTTGACTTACGGTGTTATCTCGGTCGATTC
Found at i:21149527 original size:110 final size:110
Alignment explanation
Indices: 21149280--21149593 Score: 285
Period size: 110 Copynumber: 2.8 Consensus size: 110
21149270 TACTTTTTTA
* * * * * * *
21149280 ACTCACGGTATTATCTCGATCGTTTTTTTACTTTTTTAACTCACGGTGTTATCCTGGTCGATTCT
1 ACTCACGATGTTATCCCGATCGATTCTTTAC-TTTTCAACTTACGGTGTTATCCTGGTCGATTCT
* *
21149345 TTACTATTTGACTTACGGTGTTGTCTCGGTTGATTCTTTATTTTGTG
65 TTACTATTT-ACTTACGGTGTTATCTCGGTTGATTCCTTATTTTGTG
* * * * * * * * *
21149392 ATTTACGGTGTTGTCTCGATTGATTCTTTACTTTTCAACTTACGGTGTTATCCCGATCGATTTTT
1 ACTCACGATGTTATCCCGATCGATTCTTTACTTTTCAACTTACGGTGTTATCCTGGTCGATTCTT
*
21149457 TACTTATTT-TTTACGGTGTTATCTCGGTTGATTCCTTACTTTT-TG
66 TAC-TATTTACTTACGGTGTTATCTCGGTTGATTCCTTA-TTTTGTG
* ** *
21149502 ACTCGCGATGTTATCCCCG-TCGATTCTCCA-TTGTTCGACTTACGGTGTTATCCTGGTCGATTC
1 ACTCACGATGTTAT-CCCGATCGATTCTTTACTT-TTCAACTTACGGTGTTATCCTGGTCGATTC
* * * * *
21149565 TTCACTGTTCAACTTACGATGTTGTCTCG
64 TTTACTATT-TACTTACGGTGTTATCTCG
21149594 ATCCATTCTT
Statistics
Matches: 162, Mismatches: 34, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
109 5 0.03
110 75 0.46
111 53 0.33
112 29 0.18
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.46
Consensus pattern (110 bp):
ACTCACGATGTTATCCCGATCGATTCTTTACTTTTCAACTTACGGTGTTATCCTGGTCGATTCTT
TACTATTTACTTACGGTGTTATCTCGGTTGATTCCTTATTTTGTG
Found at i:21149527 original size:147 final size:147
Alignment explanation
Indices: 21149269--21149611 Score: 334
Period size: 147 Copynumber: 2.3 Consensus size: 147
21149259 AGTTGTTTTC
* * * *
21149269 TTACTTTTTTAACTCACGGTATTATCTCGATCGTTTTTTTACTTTTTTAACTCACGGTGTTATCC
1 TTAC-TTTTCAACTTACGGTGTTATCTCGATCGATTTTTTACTTTTTT-A-TCACGGTGTTATCC
* * * * * * * ** * *
21149334 TGGTCGATTCTTTACTATTTGACTTACGGTGTTGTCTCGGTTGATTCTTTATT-TTGTGATTTAC
63 TGGTCGATTCCTTACTATTTGACTCACGATGTTATCCCCGTCGATTCTCCATTGTT-CGACTTAC
* *
21149398 GGTGTTGT-CTCGATTGATTCT
127 GGTGTTATCCT-GATCGATTCT
* *
21149419 TTACTTTTCAACTTACGGTGTTATCCCGATCGATTTTTTACTTATTTT-TTACGGTGTTAT-CTC
1 TTACTTTTCAACTTACGGTGTTATCTCGATCGATTTTTTACTT-TTTTATCACGGTGTTATCCT-
* * *
21149482 GGTTGATTCCTTACTTTTTGACTCGCGATGTTATCCCCGTCGATTCTCCATTGTTCGACTTACGG
64 GGTCGATTCCTTACTATTTGACTCACGATGTTATCCCCGTCGATTCTCCATTGTTCGACTTACGG
*
21149547 TGTTATCCTGGTCGATTCT
129 TGTTATCCTGATCGATTCT
* * * * * *
21149566 TCACTGTTCAACTTACGATGTTGTCTCGATCCATTCTTTACTTTTT
1 TTACTTTTCAACTTACGGTGTTATCTCGATCGATTTTTTACTTTTT
21149612 GACTTGTGGT
Statistics
Matches: 159, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
146 5 0.03
147 108 0.68
148 4 0.03
149 34 0.21
150 8 0.05
ACGTcount: A:0.15, C:0.20, G:0.16, T:0.48
Consensus pattern (147 bp):
TTACTTTTCAACTTACGGTGTTATCTCGATCGATTTTTTACTTTTTTATCACGGTGTTATCCTGG
TCGATTCCTTACTATTTGACTCACGATGTTATCCCCGTCGATTCTCCATTGTTCGACTTACGGTG
TTATCCTGATCGATTCT
Found at i:21149824 original size:109 final size:109
Alignment explanation
Indices: 21149620--21149824 Score: 252
Period size: 109 Copynumber: 1.9 Consensus size: 109
21149610 TTGACTTGTG
* * * * * *
21149620 GTGTTGTCCTAATTGATTTTTTATTTTTGACTTGCAGTGTTATCCCGGTTGATTCTGTAAGACTT
1 GTGTTGTCCCAATTGATTCTTTATTTTTGAATTACAGTGTTATCCCAGTCGATTCTGTAAGACTT
* * *
21149685 TCGGACATAATCTTTAAGATCTACAGGCATAATTTCAATTCACA
66 CCGGACATAATCTTTAAGACCTACAAGCATAATTTCAATTCACA
* * *
21149729 GTGTTGTCCCAATTGATTCTTTATTTTTTAATTACGGTGTTGTCCCAGTCGATTCTGTAAGAAC-
1 GTGTTGTCCCAATTGATTCTTTATTTTTGAATTACAGTGTTATCCCAGTCGATTCTGTAAG-ACT
* *
21149793 TCCGGACATAAT-TTCTTAGACCTTCAAGCATA
65 TCCGGACATAATCTT-TAAGACCTACAAGCATA
21149825 GTCTTTAAGA
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
108 2 0.03
109 76 0.95
110 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (109 bp):
GTGTTGTCCCAATTGATTCTTTATTTTTGAATTACAGTGTTATCCCAGTCGATTCTGTAAGACTT
CCGGACATAATCTTTAAGACCTACAAGCATAATTTCAATTCACA
Found at i:21150015 original size:74 final size:74
Alignment explanation
Indices: 21149887--21150106 Score: 255
Period size: 74 Copynumber: 3.0 Consensus size: 74
21149877 TCTTTATTTA
* * * * * *
21149887 TTGACTTGCGGTGTTATCCTAGTCAATTCTTTACTTCTTGACTCT-TAGTATTGTCCCGATCATT
1 TTGACTTGCGGTGTTATCCCAATCAATTCTTTACTTCTCGACT-TGCAGTGTTGTCCCGGTCATT
*
21149951 TTTTTACTTT
65 TTCTTACTTT
* * * *
21149961 TTGACTTGCAGTGTTATCCCAATCGATTCTTTACTTCTCGACTTGCAATGTTGTCCTGGTCATTT
1 TTGACTTGCGGTGTTATCCCAATCAATTCTTTACTTCTCGACTTGCAGTGTTGTCCCGGTCATTT
21150026 TCTTACTTT
66 TCTTACTTT
* * * * * * *
21150035 TCGACTCGTGGTGTTGTCTCGATCAATT-TTTACTTCTCGACTCGCAGTGTTGTCCCGGTCATTT
1 TTGACTTGCGGTGTTATCCCAATCAATTCTTTACTTCTCGACTTGCAGTGTTGTCCCGGTCATTT
21150099 TCTTACTT
66 TCTTACTT
21150107 CTCAACTCGC
Statistics
Matches: 123, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
73 42 0.34
74 81 0.66
ACGTcount: A:0.15, C:0.23, G:0.16, T:0.46
Consensus pattern (74 bp):
TTGACTTGCGGTGTTATCCCAATCAATTCTTTACTTCTCGACTTGCAGTGTTGTCCCGGTCATTT
TCTTACTTT
Found at i:21150052 original size:111 final size:110
Alignment explanation
Indices: 21149858--21150139 Score: 282
Period size: 111 Copynumber: 2.6 Consensus size: 110
21149848 TATCGATTCA
* * * * * * * *
21149858 CAGTGTTATCCTAATCGATTCTTTATTTATTGACTTGCGGTGTTATCCTAGTCA-ATTCTTTACT
1 CAGTGTTATCCCAATCGATTCTTTACTTCTCGACTTGCGATGTTGTCCTGGTCATTTTC-TTACT
* * * * *
21149922 TCTTGACTCTTAGTATTGTCCCGATCATTTTTTTACTTTTTGACTTG
65 TCTTGACTCGTAGTATTGTCCCGATCA-ATTTTTACTTCTCGACTCG
*
21149969 CAGTGTTATCCCAATCGATTCTTTACTTCTCGACTTGCAATGTTGTCCTGGTCATTTTCTTACTT
1 CAGTGTTATCCCAATCGATTCTTTACTTCTCGACTTGCGATGTTGTCCTGGTCATTTTCTTACTT
* * *
21150034 -TTCGACTCGTGGTGTTGTCTCGATCAATTTTTACTTCTCGACTCG
66 CTT-GACTCGTAGTATTGTCCCGATCAATTTTTACTTCTCGACTCG
* ** * * * * *
21150079 CAGTGTTGTCCCGGTC-ATTTTCTTACTTCTCAACTCGCGATGTCGTCCTGGTCGTTTTCTT
1 CAGTGTTATCCCAATCGATTCT-TTACTTCTCGACTTGCGATGTTGTCCTGGTCATTTTCTT
21150140 TATCACTTGA
Statistics
Matches: 142, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
109 4 0.03
110 64 0.45
111 71 0.50
112 3 0.02
ACGTcount: A:0.15, C:0.23, G:0.16, T:0.46
Consensus pattern (110 bp):
CAGTGTTATCCCAATCGATTCTTTACTTCTCGACTTGCGATGTTGTCCTGGTCATTTTCTTACTT
CTTGACTCGTAGTATTGTCCCGATCAATTTTTACTTCTCGACTCG
Found at i:21150115 original size:37 final size:37
Alignment explanation
Indices: 21149917--21150116 Score: 179
Period size: 37 Copynumber: 5.4 Consensus size: 37
21149907 AGTCAATTCT
* ** * *
21149917 TTACTTCTTGACTCTTAGTATTGTCCCGATCATTTTT
1 TTACTTCTCGACTCGCAGTGTTGTCCCGATCATTTTC
* * * * * *
21149954 TTACTTTTTGACTTGCAGTGTTATCCCAATCGATTCT-
1 TTACTTCTCGACTCGCAGTGTTGTCCCGATC-ATTTTC
* * * *
21149991 TTACTTCTCGACTTGCAATGTTGTCCTGGTCATTTTC
1 TTACTTCTCGACTCGCAGTGTTGTCCCGATCATTTTC
* ** * *
21150028 TTACTTTTCGACTCGTGGTGTTGTCTCGATCAATTT-
1 TTACTTCTCGACTCGCAGTGTTGTCCCGATCATTTTC
*
21150064 TTACTTCTCGACTCGCAGTGTTGTCCCGGTCATTTTC
1 TTACTTCTCGACTCGCAGTGTTGTCCCGATCATTTTC
*
21150101 TTACTTCTCAACTCGC
1 TTACTTCTCGACTCGC
21150117 GATGTCGTCC
Statistics
Matches: 128, Mismatches: 32, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
36 34 0.27
37 90 0.70
38 4 0.03
ACGTcount: A:0.15, C:0.24, G:0.15, T:0.46
Consensus pattern (37 bp):
TTACTTCTCGACTCGCAGTGTTGTCCCGATCATTTTC
Found at i:21150128 original size:110 final size:111
Alignment explanation
Indices: 21149937--21150139 Score: 257
Period size: 110 Copynumber: 1.8 Consensus size: 111
21149927 ACTCTTAGTA
* * * * *
21149937 TTGTCCCGATCATTTTTTTACTTTTTGACTTGCAGTGTTATCCCAATCGATTCTTTACTTCTCGA
1 TTGTCCCGATCATATTTTTACTTCTCGACTCGCAGTGTTATCCCAATCGATTCTTTACTTCTCAA
* *
21150002 CTTGCAATGTTGTCCTGGTCATTTTCTTACTTTTCGACTCGTGGTG
66 CTCGCAATGTCGTCCTGGTCATTTTCTTACTTTTCGACTCGTGGTG
* * ** *
21150048 TTGTCTCGATCA-ATTTTTACTTCTCGACTCGCAGTGTTGTCCCGGTC-ATTTTCTTACTTCTCA
1 TTGTCCCGATCATATTTTTACTTCTCGACTCGCAGTGTTATCCCAATCGATTCT-TTACTTCTCA
* *
21150111 ACTCGCGATGTCGTCCTGGTCGTTTTCTT
65 ACTCGCAATGTCGTCCTGGTCATTTTCTT
21150140 TATCACTTGA
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
109 4 0.05
110 62 0.81
111 11 0.14
ACGTcount: A:0.13, C:0.25, G:0.17, T:0.45
Consensus pattern (111 bp):
TTGTCCCGATCATATTTTTACTTCTCGACTCGCAGTGTTATCCCAATCGATTCTTTACTTCTCAA
CTCGCAATGTCGTCCTGGTCATTTTCTTACTTTTCGACTCGTGGTG
Found at i:21150137 original size:37 final size:37
Alignment explanation
Indices: 21149991--21150139 Score: 160
Period size: 37 Copynumber: 4.1 Consensus size: 37
21149981 AATCGATTCT
* *
21149991 TTACTTCTCGACTTGCAATGTTGTCCTGGTCATTTTC
1 TTACTTCTCGACTCGCGATGTTGTCCTGGTCATTTTC
* * * * *
21150028 TTACTTTTCGACTCGTGGTGTTGT-CTCGATCAATTT-
1 TTACTTCTCGACTCGCGATGTTGTCCT-GGTCATTTTC
*
21150064 TTACTTCTCGACTCGC-AGTGTTGTCCCGGTCATTTTC
1 TTACTTCTCGACTCGCGA-TGTTGTCCTGGTCATTTTC
* * *
21150101 TTACTTCTCAACTCGCGATGTCGTCCTGGTCGTTTTC
1 TTACTTCTCGACTCGCGATGTTGTCCTGGTCATTTTC
21150138 TT
1 TT
21150140 TATCACTTGA
Statistics
Matches: 90, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
36 29 0.32
37 60 0.67
38 1 0.01
ACGTcount: A:0.12, C:0.26, G:0.18, T:0.44
Consensus pattern (37 bp):
TTACTTCTCGACTCGCGATGTTGTCCTGGTCATTTTC
Found at i:21150924 original size:14 final size:14
Alignment explanation
Indices: 21150902--21150943 Score: 59
Period size: 15 Copynumber: 3.0 Consensus size: 14
21150892 ACCTTCTCAC
21150902 AAAAA-AAAAAAAA
1 AAAAACAAAAAAAA
21150915 AAAAACAAAAAAAA
1 AAAAACAAAAAAAA
*
21150929 ACAAACCAAAAAAAA
1 A-AAAACAAAAAAAA
21150944 TATAACACAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 5 0.19
14 9 0.35
15 12 0.46
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAACAAAAAAAA
Found at i:21151912 original size:21 final size:21
Alignment explanation
Indices: 21151858--21151920 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
21151848 TTAAAGTAGG
21151858 ATAATAA-CTAAAAAA-AATA
1 ATAATAATCTAAAAAATAATA
* *
21151877 CTAAAAATGCTTAAAAAATAATA
1 ATAATAAT-C-TAAAAAATAATA
*
21151900 ATAATAATCTAAAAATTAATA
1 ATAATAATCTAAAAAATAATA
21151921 TTAAGAATAG
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 5 0.14
21 12 0.34
22 8 0.23
23 10 0.29
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (21 bp):
ATAATAATCTAAAAAATAATA
Found at i:21151913 original size:20 final size:20
Alignment explanation
Indices: 21151858--21151920 Score: 56
Period size: 23 Copynumber: 3.0 Consensus size: 20
21151848 TTAAAGTAGG
*
21151858 ATAATAA-CTAAAAAAAATA
1 ATAATAATCTAAAAATAATA
* *
21151877 CTAAAAATGCTTAAAAAATAATA
1 ATAATAAT-C-T-AAAAATAATA
21151900 ATAATAATCTAAAAATTAATA
1 ATAATAATCTAAAAA-TAATA
21151921 TTAAGAATAG
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
19 5 0.15
20 5 0.15
21 7 0.21
22 2 0.06
23 15 0.44
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (20 bp):
ATAATAATCTAAAAATAATA
Found at i:21152044 original size:3 final size:3
Alignment explanation
Indices: 21152038--21152067 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
21152028 ACAAAAAAAT
*
21152038 TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
21152068 ATTTTCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:21152316 original size:22 final size:22
Alignment explanation
Indices: 21152290--21152338 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
21152280 ACCCTTGAAT
*
21152290 CCAAAACCCT-AAAATCCAAACC
1 CCAAAACCCTCAAAA-CCAAAAC
*
21152312 CCAAAACCTTCAAAACCAAAAC
1 CCAAAACCCTCAAAACCAAAAC
21152334 CCAAA
1 CCAAA
21152339 GTTTGAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.53, C:0.39, G:0.00, T:0.08
Consensus pattern (22 bp):
CCAAAACCCTCAAAACCAAAAC
Found at i:21154296 original size:2 final size:2
Alignment explanation
Indices: 21154289--21154339 Score: 63
Period size: 2 Copynumber: 26.0 Consensus size: 2
21154279 CAACTCTGTG
21154289 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TGA TGA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A T-A TA TA TA
21154331 -A TA TA TA TA
1 TA TA TA TA TA
21154340 AAAAATATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
1 3 0.07
2 38 0.84
3 4 0.09
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (2 bp):
TA
Found at i:21159127 original size:25 final size:28
Alignment explanation
Indices: 21159082--21159153 Score: 73
Period size: 26 Copynumber: 2.7 Consensus size: 28
21159072 TGAATTATAA
*
21159082 TAAAATATTTTATATAGTATTTAAATAT
1 TAAAATATTTTATATAGTATTAAAATAT
21159110 TAAAAT-TTTTA-ATA-TATTAAAATTAT
1 TAAAATATTTTATATAGTATTAAAA-TAT
* *
21159136 GAATATA-TTTAT-TAGTAT
1 TAAAATATTTTATATAGTAT
21159154 AATCTTTAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
25 7 0.19
26 16 0.43
27 8 0.22
28 6 0.16
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (28 bp):
TAAAATATTTTATATAGTATTAAAATAT
Found at i:21159128 original size:17 final size:17
Alignment explanation
Indices: 21159101--21159144 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
21159091 TTATATAGTA
21159101 TTTAA-ATATTAAAATT
1 TTTAATATATTAAAATT
21159117 TTTAATATATTAAAATT
1 TTTAATATATTAAAATT
* *
21159134 ATGAATATATT
1 TTTAATATATT
21159145 TATTAGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 5 0.20
17 20 0.80
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (17 bp):
TTTAATATATTAAAATT
Found at i:21159737 original size:11 final size:11
Alignment explanation
Indices: 21159721--21159760 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
21159711 AATCTCATAA
21159721 GAGATTTGTTT
1 GAGATTTGTTT
*
21159732 GAGATTTGTTA
1 GAGATTTGTTT
21159743 GAGATTTGTTT
1 GAGATTTGTTT
21159754 GAGATTT
1 GAGATTT
21159761 TTCAGATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:21159874 original size:52 final size:52
Alignment explanation
Indices: 21159787--21159943 Score: 226
Period size: 52 Copynumber: 3.0 Consensus size: 52
21159777 TGGACAAGAA
*
21159787 GACTTGCAAAAGAAGAATTCTAAGA-GAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAG-GGATTCTTAATAGGTAAGTTT
* *
21159839 GATTTGCAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGTAAGTTT
* * * * *
21159891 GACTTACAGGAGAAGAATTCTAAGAGGAGAGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGTAAGTTT
21159943 G
1 G
21159944 TATGGTTATA
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 89 0.95
53 5 0.05
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.27
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGTAAGTTT
Found at i:21160467 original size:31 final size:31
Alignment explanation
Indices: 21160429--21160543 Score: 169
Period size: 31 Copynumber: 3.7 Consensus size: 31
21160419 GGCTTTTAGC
21160429 CCAACAAATGGTATCAGAGCTGTGGTGATCT
1 CCAACAAATGGTATCAGAGCTGTGGTGATCT
* *
21160460 CCAACAAATGGTATCGGAGCTGTGGTGTTCT
1 CCAACAAATGGTATCAGAGCTGTGGTGATCT
*
21160491 TCAACAAATGGTATCAGAGCTGTGGT-ATTCT
1 CCAACAAATGGTATCAGAGCTGTGGTGA-TCT
* *
21160522 CGAACAAGTGGTATCAGAGCTG
1 CCAACAAATGGTATCAGAGCTG
21160544 AAGGTTTGAA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
CCAACAAATGGTATCAGAGCTGTGGTGATCT
Found at i:21160571 original size:25 final size:25
Alignment explanation
Indices: 21160537--21160625 Score: 65
Period size: 25 Copynumber: 3.6 Consensus size: 25
21160527 AAGTGGTATC
21160537 AGAGCTGAAGGTTTGAAATGTGAGA
1 AGAGCTGAAGGTTTGAAATGTGAGA
* * * *
21160562 AGAGTTGAA-GATTCAAGATGT-AAA
1 AGAGCTGAAGGTTTGAA-ATGTGAGA
* * * *
21160586 AGAGCTGAAAGTTCGAGATGTGGGA
1 AGAGCTGAAGGTTTGAAATGTGAGA
* *
21160611 AGAGTTAAAGGTTTG
1 AGAGCTGAAGGTTTG
21160626 GGAAGTGCAT
Statistics
Matches: 46, Mismatches: 15, Indels: 6
0.69 0.22 0.09
Matches are distributed among these distances:
24 19 0.41
25 27 0.59
ACGTcount: A:0.37, C:0.04, G:0.34, T:0.25
Consensus pattern (25 bp):
AGAGCTGAAGGTTTGAAATGTGAGA
Found at i:21160604 original size:24 final size:25
Alignment explanation
Indices: 21160537--21160607 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 25
21160527 AAGTGGTATC
* * * *
21160537 AGAGCTGAAGGTTTGAAATGTGAGA
1 AGAGCTGAAAGTTCGAGATGTGAAA
* *
21160562 AGAGTTG-AAGATTCAAGATGT-AAA
1 AGAGCTGAAAG-TTCGAGATGTGAAA
21160586 AGAGCTGAAAGTTCGAGATGTG
1 AGAGCTGAAAGTTCGAGATGTG
21160608 GGAAGAGTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
24 19 0.54
25 16 0.46
ACGTcount: A:0.38, C:0.06, G:0.32, T:0.24
Consensus pattern (25 bp):
AGAGCTGAAAGTTCGAGATGTGAAA
Found at i:21160687 original size:18 final size:19
Alignment explanation
Indices: 21160664--21160700 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
21160654 AAGCAAGTTC
21160664 AGAAGAGCTCGA-TTCGAG
1 AGAAGAGCTCGAGTTCGAG
*
21160682 AGAAGAGTTCGAGTTCGAG
1 AGAAGAGCTCGAGTTCGAG
21160701 TTTTGAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.32, C:0.14, G:0.35, T:0.19
Consensus pattern (19 bp):
AGAAGAGCTCGAGTTCGAG
Found at i:21160888 original size:11 final size:11
Alignment explanation
Indices: 21160872--21160911 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
21160862 AATCCCATAA
21160872 GAGATTTGTTT
1 GAGATTTGTTT
*
21160883 GAGATTTGTTA
1 GAGATTTGTTT
21160894 GAGATTTGTTT
1 GAGATTTGTTT
*
21160905 AAGATTT
1 GAGATTT
21160912 TTCAGATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:21161026 original size:52 final size:52
Alignment explanation
Indices: 21160938--21161094 Score: 215
Period size: 52 Copynumber: 3.0 Consensus size: 52
21160928 TGGATAAGAA
* * ** *
21160938 GACTTACAAAAGAAGAATTCTAAAAGAAAAAAGATTCTTAATAGGTAAGTTT
1 GACTTACAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
*
21160990 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTACAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
* * * * *
21161042 GACTTACAGGAGAAGAATTCTAAGAGGAGAGGGATTCTTAATGGGCACGTTT
1 GACTTACAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
21161094 G
1 G
21161095 TATGATTATA
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 93 1.00
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.25
Consensus pattern (52 bp):
GACTTACAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
Found at i:21162380 original size:17 final size:18
Alignment explanation
Indices: 21162360--21162393 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
21162350 ATAAATTTAA
21162360 TTAAAAATTTC-AATATC
1 TTAAAAATTTCTAATATC
*
21162377 TTAAATATTTCTAATAT
1 TTAAAAATTTCTAATAT
21162394 ACTTTCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAAAAATTTCTAATATC
Found at i:21163968 original size:2 final size:2
Alignment explanation
Indices: 21163961--21163987 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
21163951 CTTCTTTGTA
21163961 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
21163988 GATAGATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21166551 original size:404 final size:398
Alignment explanation
Indices: 21165798--21166594 Score: 953
Period size: 404 Copynumber: 2.0 Consensus size: 398
21165788 GAAAACAATA
* * * ***
21165798 TCAAATCATTTATCAACTATTCAATTGGCAACAACCCTAGCTCAATTTGCAAATTACTCAAATTC
1 TCAAATCATTTATCAACCATTCAATCGACAACAACCCTAGCTCAATCCACAAATTACTCAAATTC
* ** *
21165863 AAATTAGTCTTAAGTCTTCAATCAACAATCAAGAGTAAAAATAGAAAGTTAAATTACCTCTTTTT
66 AAATCAACCTCAAGTCTTCAATCAACAATCAAGAGTAAAAATAGAAAGTTAAATTACCTC-TTTT
* * * * *
21165928 TTTTTTTTTTGCAAAATTTCTATAAAATAATATTTATCTTTGTGAGAATTTGAAAGAGACGAGGG
130 TTATCTTTTTGCAAAATTTCTATAAAATAATATCTATCTTTATAAGAATTTGAAAGAGACGAGGG
* * * * * * * * *
21165993 AGGTACTCTGTAGAAACTAGGCAGGTGATAGTGACGACGGTATGCAAGAGAGAGTGAGAGATGCA
195 ACGTAATATGTAGAAACTAGACAGGTGACAATAACGACGGTATGCAAGAAAGAGTGAAAGATGCA
*** * * *
21166058 AAGAAAAATGAGAGAAAAAGAAGACGCTTGAGGCATGAAGAACAGAAGAAGATTTGAGGAGGGAA
260 AAGAAAAATGAGAGAAAAAGAAGACGCCCAAGGCATAAAGAACAAAAAAAGATTTGAGGAGGGAA
* *
21166123 TTAGATAGCTAAAATTTGGGGGAAATTTAGGGA-GTGGTGGATAGAGTGGGACGAAAGGGGAAGG
325 TTAGATAGCCAAAATTTGGGGGAAATTTA-GGATG-GGTGGATAGAGTGGGACAAAAGGGGAAGG
21166187 GTGGGGTGAGG
388 GTGGGGTGAGG
* *
21166198 TCAAATCATTTATCAACCATTCAATCGACAGCAACCCTAGCTCAATCCATAAATTA-TCTAAATT
1 TCAAATCATTTATCAACCATTCAATCGACAACAACCCTAGCTCAATCCACAAATTACTC-AAATT
*
21166262 CAAATCAACCTCAAGTCTTCAATCAACAATCAAGATTAAAAAAGGTAAGAAGAGAAAGTTAAATT
65 CAAATCAACCTCAAGTCTTCAATCAACAATCAAGAGT-AAAAA--T------AGAAAGTTAAATT
* * *
21166327 A-C-C-TTTTTATCTTTTTGCAAACA-TT-TGTAAAATAATGTCTATCTTTATAAGAATTTGATA
121 ACCTCTTTTTTATCTTTTTGCAAA-ATTTCTATAAAATAATATCTATCTTTATAAGAATTTGAAA
* ** * *
21166387 GAGATGAGGGACGTAATATGTAGGCACTAGATAGGTGACAATAACGA-GAGTATGCGAGAAAGAG
185 GAGACGAGGGACGTAATATGTAGAAACTAGACAGGTGACAATAACGACG-GTATGCAAGAAAGAG
* *
21166451 TGAAAGATGCAAAGAAAAATGGGAGAATAAGAAGACGCCCAAGGCATAAAGAACAAAAAAAGATT
249 TGAAAGATGCAAAGAAAAATGAGAGAAAAAGAAGACGCCCAAGGCATAAAGAACAAAAAAAGATT
* * * * *
21166516 TGAGGAGGGAATTAGGTAGCCAAATTTTTGGGGAAATTTAGGATGGGTGGGTGGAGTGGGACAAA
314 TGAGGAGGGAATTAGATAGCCAAAATTTGGGGGAAATTTAGGATGGGTGGATAGAGTGGGACAAA
21166581 AGGGGAAGGGTGGG
379 AGGGGAAGGGTGGG
21166595 TTTTTTATTT
Statistics
Matches: 334, Mismatches: 50, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
399 2 0.01
400 85 0.25
401 5 0.01
403 36 0.11
404 171 0.51
405 18 0.05
406 1 0.00
407 1 0.00
408 1 0.00
409 14 0.04
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (398 bp):
TCAAATCATTTATCAACCATTCAATCGACAACAACCCTAGCTCAATCCACAAATTACTCAAATTC
AAATCAACCTCAAGTCTTCAATCAACAATCAAGAGTAAAAATAGAAAGTTAAATTACCTCTTTTT
TATCTTTTTGCAAAATTTCTATAAAATAATATCTATCTTTATAAGAATTTGAAAGAGACGAGGGA
CGTAATATGTAGAAACTAGACAGGTGACAATAACGACGGTATGCAAGAAAGAGTGAAAGATGCAA
AGAAAAATGAGAGAAAAAGAAGACGCCCAAGGCATAAAGAACAAAAAAAGATTTGAGGAGGGAAT
TAGATAGCCAAAATTTGGGGGAAATTTAGGATGGGTGGATAGAGTGGGACAAAAGGGGAAGGGTG
GGGTGAGG
Found at i:21166851 original size:23 final size:22
Alignment explanation
Indices: 21166815--21166860 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
21166805 TAAAATTAAA
21166815 TATTATATTTTGATTTTGTTATT
1 TATTATATTTTGATTTTG-TATT
21166838 TATTA-ATTTATGATTTTGTATT
1 TATTATATTT-TGATTTTGTATT
21166860 T
1 T
21166861 GAAATTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (22 bp):
TATTATATTTTGATTTTGTATT
Found at i:21166861 original size:29 final size:28
Alignment explanation
Indices: 21166817--21166875 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
21166807 AAATTAAATA
** *
21166817 TTATATTTTGATTTTGTTATTTATTAAT
1 TTATATTTTGATTTTGAAATTTAATAAT
21166845 TTATGATTTTG-TATTTGAAATTTAATAAT
1 TTAT-ATTTTGAT-TTTGAAATTTAATAAT
21166874 TT
1 TT
21166876 TTTTGTTGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (28 bp):
TTATATTTTGATTTTGAAATTTAATAAT
Found at i:21167755 original size:2 final size:2
Alignment explanation
Indices: 21167748--21167776 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
21167738 GGTTGGAGTA
21167748 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21167777 AAGAAGGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21170068 original size:21 final size:21
Alignment explanation
Indices: 21170029--21170073 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
21170019 TTTTTTTTCA
* *
21170029 TTTTATTTTATTTTATTTATT
1 TTTTATCTTATTTTATTTAAT
21170050 TTTTATCTTATTATT-TTTAAT
1 TTTTATCTTATT-TTATTTAAT
21170071 TTT
1 TTT
21170074 ATAATTTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTATCTTATTTTATTTAAT
Found at i:21170072 original size:26 final size:27
Alignment explanation
Indices: 21170021--21170072 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
21170011 CACAAGGTTT
* *
21170021 TTTTTTCATTTTATTTTATTTTATTTA
1 TTTTTTCATCTTATTTTATTTAATTTA
21170048 TTTTTT-ATCTTATTATT-TTTAATTT
1 TTTTTTCATCTTATT-TTATTTAATTT
21170073 TATAATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (27 bp):
TTTTTTCATCTTATTTTATTTAATTTA
Found at i:21170080 original size:15 final size:14
Alignment explanation
Indices: 21170034--21170081 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
21170024 TTTCATTTTA
21170034 TTTTATTTTATTTATT
1 TTTTATTTTA-TTA-T
*
21170050 TTTTATCTTATTAT
1 TTTTATTTTATTAT
*
21170064 TTTTAATTTTATAAT
1 TTTT-ATTTTATTAT
21170079 TTT
1 TTT
21170082 ACTAGTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 5 0.18
15 14 0.50
16 9 0.32
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTATTTTATTAT
Found at i:21183232 original size:15 final size:15
Alignment explanation
Indices: 21183210--21183254 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
21183200 ATTTTCAAAT
21183210 TTTA-TTTTATTTTA
1 TTTATTTTTATTTTA
*
21183224 TTTATTTTTATCTTA
1 TTTATTTTTATTTTA
21183239 -TTATTTTTAGTTTTA
1 TTTATTTTTA-TTTTA
21183254 T
1 T
21183255 AATTTTACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (15 bp):
TTTATTTTTATTTTA
Found at i:21183234 original size:20 final size:20
Alignment explanation
Indices: 21183209--21183254 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
21183199 TATTTTCAAA
* *
21183209 TTTTATTTTATT-TTATTTAT
1 TTTTATCTTATTATT-TTTAG
21183229 TTTTATCTTATTATTTTTAG
1 TTTTATCTTATTATTTTTAG
21183249 TTTTAT
1 TTTTAT
21183255 AATTTTACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTATCTTATTATTTTTAG
Found at i:21183259 original size:15 final size:14
Alignment explanation
Indices: 21183214--21183260 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 14
21183204 TCAAATTTTA
21183214 TTTTATTTTATTTAT
1 TTTTATTTTA-TTAT
*
21183229 TTTTATCTTATTAT
1 TTTTATTTTATTAT
*
21183243 TTTTAGTTTTATAAT
1 TTTTA-TTTTATTAT
21183258 TTT
1 TTT
21183261 ACTAGTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 9 0.32
15 19 0.68
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (14 bp):
TTTTATTTTATTAT
Found at i:21183268 original size:17 final size:18
Alignment explanation
Indices: 21183246--21183279 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21183236 TTATTATTTT
21183246 TAGTTTT-ATAATTTTAC
1 TAGTTTTCATAATTTTAC
*
21183263 TAGTTTTCATATTTTTA
1 TAGTTTTCATAATTTTA
21183280 TTCAATATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (18 bp):
TAGTTTTCATAATTTTAC
Found at i:21188242 original size:21 final size:21
Alignment explanation
Indices: 21188218--21188269 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
21188208 AAGTTTCATT
21188218 ACTTTTGATAAAATTTTGATA
1 ACTTTTGATAAAATTTTGATA
* *
21188239 ACTTTTGATATAATTTTGTTA
1 ACTTTTGATAAAATTTTGATA
*
21188260 ACCTTTGATA
1 ACTTTTGATA
21188270 TTAATATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.50
Consensus pattern (21 bp):
ACTTTTGATAAAATTTTGATA
Found at i:21188246 original size:10 final size:10
Alignment explanation
Indices: 21188218--21188269 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
21188208 AAGTTTCATT
21188218 ACTTTTGATAA
1 ACTTTTGAT-A
*
21188229 AATTTTGATA
1 ACTTTTGATA
21188239 ACTTTTGATA
1 ACTTTTGATA
* *
21188249 TAATTTTGTTA
1 -ACTTTTGATA
*
21188260 ACCTTTGATA
1 ACTTTTGATA
21188270 TTAATATAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 17 0.52
11 16 0.48
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.50
Consensus pattern (10 bp):
ACTTTTGATA
Found at i:21188413 original size:20 final size:22
Alignment explanation
Indices: 21188350--21188424 Score: 66
Period size: 21 Copynumber: 3.5 Consensus size: 22
21188340 TTATTACCTC
* **
21188350 TTAATGTAATTTTAGTAACAT-
1 TTAATATAATTTTAGTAATTTA
* *
21188371 TTCATATAATTTTGGTAATTTA
1 TTAATATAATTTTAGTAATTTA
*
21188393 -TAATATATTTTTAGTAA-TTA
1 TTAATATAATTTTAGTAATTTA
*
21188413 TTAATAAAATTT
1 TTAATATAATTT
21188425 GTGCATCATA
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 3 0.07
21 39 0.93
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.52
Consensus pattern (22 bp):
TTAATATAATTTTAGTAATTTA
Found at i:21188698 original size:22 final size:22
Alignment explanation
Indices: 21188668--21188731 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
21188658 AAGTTATACA
*
21188668 ATTAAATTATCATTAATTTACT
1 ATTAAATTATCAATAATTTACT
* *
21188690 ATTATATTATCAATAATTTATT
1 ATTAAATTATCAATAATTTACT
* **
21188712 ACTAAATTATTGATAATTTA
1 ATTAAATTATCAATAATTTA
21188732 TTACTTAGTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (22 bp):
ATTAAATTATCAATAATTTACT
Found at i:21188732 original size:22 final size:22
Alignment explanation
Indices: 21188702--21188756 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
21188692 TATATTATCA
21188702 ATAATTTATTACTAAATTATTG
1 ATAATTTATTACTAAATTATTG
* *
21188724 ATAATTTATTACTTAGTTATTG
1 ATAATTTATTACTAAATTATTG
*
21188746 ATGATTTATTA
1 ATAATTTATTA
21188757 AAAAGCTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.53
Consensus pattern (22 bp):
ATAATTTATTACTAAATTATTG
Found at i:21188923 original size:119 final size:119
Alignment explanation
Indices: 21188778--21189013 Score: 384
Period size: 119 Copynumber: 2.0 Consensus size: 119
21188768 GTTATTTATG
**
21188778 ACTAATTTATTGATGATTTACTTCAAAGTTAACAATGATTAACTAATTTATTACTAAATTATCAT
1 ACTAATTTATCAATGATTTACTTCAAAGTTAACAATGATTAACTAATTTATTACTAAATTATCAT
* *
21188843 TGATTTACAATTAAGTTAAGCGATTTACTAGT-AATAAGTTATCAATAATTTACT
66 TGATTTACAAGTAAGTTAAGCAATTTACTA-TCAATAAGTTATCAATAATTTACT
* *
21188897 ACTAATTTATCAATGATTTATTTCAAAGTTAACAATGATTAACTAATTTATTATTAAATTATCAT
1 ACTAATTTATCAATGATTTACTTCAAAGTTAACAATGATTAACTAATTTATTACTAAATTATCAT
* *
21188962 TGCTTTACAAGTAAGTTAAGTAATTTACTATCAATAAGTTATCAATAATTTA
66 TGATTTACAAGTAAGTTAAGCAATTTACTATCAATAAGTTATCAATAATTTA
21189014 TTATTAAATA
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
118 1 0.01
119 107 0.99
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (119 bp):
ACTAATTTATCAATGATTTACTTCAAAGTTAACAATGATTAACTAATTTATTACTAAATTATCAT
TGATTTACAAGTAAGTTAAGCAATTTACTATCAATAAGTTATCAATAATTTACT
Found at i:21189133 original size:21 final size:23
Alignment explanation
Indices: 21189097--21189156 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 23
21189087 GTTTTCGATT
*
21189097 ATTTATTATAAAATTATTACA-A
1 ATTTATTATTAAATTATTACATA
*
21189119 ATTTA-TATTAAATTA-TCCATA
1 ATTTATTATTAAATTATTACATA
*
21189140 ATTTATTATTAAGTTAT
1 ATTTATTATTAAATTAT
21189157 CATTGATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
20 3 0.09
21 15 0.47
22 14 0.44
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (23 bp):
ATTTATTATTAAATTATTACATA
Found at i:21189149 original size:22 final size:22
Alignment explanation
Indices: 21189097--21189285 Score: 111
Period size: 22 Copynumber: 8.7 Consensus size: 22
21189087 GTTTTCGATT
* * *
21189097 ATTTATTATAAAATTATTACA-A
1 ATTTATTATTAAATTA-TCCATG
*
21189119 ATTTA-TATTAAATTATCCATA
1 ATTTATTATTAAATTATCCATG
*
21189140 ATTTATTATTAAGTTAT-CATTG
1 ATTTATTATTAAATTATCCA-TG
* * **
21189162 ATTAACTATTAAATTATTGATG
1 ATTTATTATTAAATTATCCATG
* *
21189184 ATTTACTATTAAGTTAT--ATTG
1 ATTTATTATTAAATTATCCA-TG
* * *
21189205 ATTTACTT-TTAAGTTTTCAATG
1 ATTTA-TTATTAAATTATCCATG
* **
21189227 ATTAATTATTAAATTATCGTTG
1 ATTTATTATTAAATTATCCATG
**
21189249 ATTTATTATTAAATTATTTATG
1 ATTTATTATTAAATTATCCATG
* *
21189271 ATTTACTACTAAATT
1 ATTTATTATTAAATT
21189286 TATTAATTAA
Statistics
Matches: 135, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
20 4 0.03
21 34 0.25
22 95 0.70
23 2 0.01
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.51
Consensus pattern (22 bp):
ATTTATTATTAAATTATCCATG
Found at i:21189251 original size:65 final size:67
Alignment explanation
Indices: 21189119--21189277 Score: 191
Period size: 65 Copynumber: 2.4 Consensus size: 67
21189109 ATTATTACAA
** * * *
21189119 ATTTA-TATTAAATTATCCATAATTTA-TTATTAAGTTATCATTGATTAACTATTAAATTATTGA
1 ATTTACTATTAAATTATATATGATTTACTTATTAAGTTATCAATGATTAACTATTAAATTATCGA
21189182 TG
66 TG
* * * *
21189184 ATTTACTATTAAGTTATAT-TGATTTACTT-TTAAGTTTTCAATGATTAATTATTAAATTATCGT
1 ATTTACTATTAAATTATATATGATTTACTTATTAAGTTATCAATGATTAACTATTAAATTATCGA
21189247 TG
66 TG
* *
21189249 ATTTATTATTAAATTATTTATGATTTACT
1 ATTTACTATTAAATTATATATGATTTACT
21189278 ACTAAATTTA
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
65 58 0.73
66 21 0.27
ACGTcount: A:0.35, C:0.06, G:0.07, T:0.52
Consensus pattern (67 bp):
ATTTACTATTAAATTATATATGATTTACTTATTAAGTTATCAATGATTAACTATTAAATTATCGA
TG
Done.