Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 124 of 131
Found at i:22520343 original size:20 final size:20
Alignment explanation
Indices: 22520317--22520360 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
22520307 ATTTTTATTT
*
22520317 TATAAAAATTA-AAAAAATA
1 TATAAAAACTATAAAAAATA
22520336 TATAAAAACTATAAAAAATA
1 TATAAAAACTATAAAAAATA
22520356 TATAA
1 TATAA
22520361 TTCAGTTCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (20 bp):
TATAAAAACTATAAAAAATA
Found at i:22521604 original size:118 final size:119
Alignment explanation
Indices: 22521414--22521652 Score: 426
Period size: 118 Copynumber: 2.0 Consensus size: 119
22521404 TTACTATAGG
* *
22521414 TATTATGAATTGGATTTGATTTGATTAAATTTAATTGATGTTTAAGTACATACATTAATTTAAAT
1 TATTATGAATTGAATTTGATTTGATTAAATTTAATTCATGTTTAAGTACATACATTAATTTAAAT
*
22521479 TTAATTATTTTAAAAATATTATTAATATATTTAAATTTTCATAATTAAAATTAA
66 TTAATTATTTTAAAAATATTATTAATATATTTAAAATTTCATAATTAAAATTAA
* *
22521533 TATTATGAATTGAATTTGATTTGATTAAATTTAA-TCATGTTTAAGTATATACATTCATTTAAAT
1 TATTATGAATTGAATTTGATTTGATTAAATTTAATTCATGTTTAAGTACATACATTAATTTAAAT
22521597 TTAATTATTTTAAAAATATTATTAATATATTTAAAATTTCATAATTAAAATTAA
66 TTAATTATTTTAAAAATATTATTAATATATTTAAAATTTCATAATTAAAATTAA
22521651 TA
1 TA
22521653 AAAGATATCA
Statistics
Matches: 115, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
118 82 0.71
119 33 0.29
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (119 bp):
TATTATGAATTGAATTTGATTTGATTAAATTTAATTCATGTTTAAGTACATACATTAATTTAAAT
TTAATTATTTTAAAAATATTATTAATATATTTAAAATTTCATAATTAAAATTAA
Found at i:22522729 original size:12 final size:12
Alignment explanation
Indices: 22522714--22522738 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22522704 ATGATAAAAT
22522714 TAAAATTGATAA
1 TAAAATTGATAA
22522726 TAAAATTGATAA
1 TAAAATTGATAA
22522738 T
1 T
22522739 TTGTTATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (12 bp):
TAAAATTGATAA
Found at i:22523860 original size:14 final size:13
Alignment explanation
Indices: 22523824--22523862 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
22523814 TAACTACGAT
22523824 TAAAATAAATTTA
1 TAAAATAAATTTA
*
22523837 TAAAAAAAATTATA
1 TAAAATAAATT-TA
*
22523851 TTAAATAAATTT
1 TAAAATAAATTT
22523863 TACTGAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAATAAATTTA
Found at i:22527006 original size:10 final size:11
Alignment explanation
Indices: 22526981--22527009 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
22526971 CAGAATGATG
22526981 TAATATAAATA
1 TAATATAAATA
22526992 TAATATAAA-A
1 TAATATAAATA
22527002 TAATATAA
1 TAATATAA
22527010 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.50
11 9 0.50
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATATAAATA
Found at i:22527008 original size:15 final size:15
Alignment explanation
Indices: 22526988--22527031 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
22526978 ATGTAATATA
22526988 AATATAATATAAAAT
1 AATATAATATAAAAT
*
22527003 AATATAATTTAAAAT
1 AATATAATATAAAAT
**
22527018 TTTAATAATATAAA
1 AAT-ATAATATAAA
22527032 TTTAATAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 15 0.62
16 9 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AATATAATATAAAAT
Found at i:22528066 original size:25 final size:24
Alignment explanation
Indices: 22528017--22528067 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
22528007 ATCATATAAA
* * *
22528017 ATATTAAAATTTATATTATATTTT
1 ATATAAAAATTTATATAATAATTT
22528041 ATATAAAAATTATATATAATAATTT
1 ATATAAAAATT-TATATAATAATTT
22528066 AT
1 AT
22528068 GTTAATACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 10 0.43
25 13 0.57
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
ATATAAAAATTTATATAATAATTT
Found at i:22528135 original size:24 final size:24
Alignment explanation
Indices: 22528118--22528167 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
22528108 TTTATATATA
22528118 ATTATTCTTAAATTTTTAAATCAT
1 ATTATTCTTAAATTTTTAAATCAT
* * *
22528142 ATTATTTTTATA-TTTTAAATTAT
1 ATTATTCTTAAATTTTTAAATCAT
22528165 ATT
1 ATT
22528168 TATATTCGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (24 bp):
ATTATTCTTAAATTTTTAAATCAT
Found at i:22528846 original size:26 final size:25
Alignment explanation
Indices: 22528795--22528851 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
22528785 TTTTTATTAA
*
22528795 ATTTTTTTTCAAACATAACAAAAAT
1 ATTTTTTTTCAAACACAACAAAAAT
* * *
22528820 ATATTTTTTTCAATCACAACTATAAT
1 AT-TTTTTTTCAAACACAACAAAAAT
22528846 ATTTTT
1 ATTTTT
22528852 ATTATTATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTTTTTTTCAAACACAACAAAAAT
Found at i:22533681 original size:22 final size:23
Alignment explanation
Indices: 22533638--22533681 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
22533628 ATATAATCAC
22533638 ATTTAAAAATTAACATTCAATAA
1 ATTTAAAAATTAACATTCAATAA
* * *
22533661 ATTTGAAATTTAA-ATTTAATA
1 ATTTAAAAATTAACATTCAATA
22533682 TTTATAATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (23 bp):
ATTTAAAAATTAACATTCAATAA
Found at i:22536705 original size:24 final size:24
Alignment explanation
Indices: 22536650--22536706 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
22536640 GTGTTTTTGG
22536650 TAAAAAATACCTTGAACAATACCT
1 TAAAAAATACCTTGAACAATACCT
* * * *
22536674 TCATAAATACCTTGAATAA-CCTCT
1 TAAAAAATACCTTGAACAATAC-CT
22536698 TAAAAAATA
1 TAAAAAATA
22536707 AAAAATAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.49, C:0.19, G:0.04, T:0.28
Consensus pattern (24 bp):
TAAAAAATACCTTGAACAATACCT
Found at i:22537429 original size:12 final size:12
Alignment explanation
Indices: 22537412--22537459 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 12
22537402 TCTATTTAAA
22537412 TATATTAAAAAT
1 TATATTAAAAAT
22537424 TATATTAAATAA-
1 TATATTAAA-AAT
22537436 TATATTAAAAATT
1 TATATTAAAAA-T
*
22537449 TAAATTAAAAA
1 TATATTAAAAA
22537460 AATTATTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
11 2 0.06
12 18 0.56
13 12 0.38
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
TATATTAAAAAT
Found at i:22537442 original size:24 final size:25
Alignment explanation
Indices: 22537410--22537457 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
22537400 AATCTATTTA
*
22537410 AATATATTAAAAA-TTATATTAAAT
1 AATATATTAAAAATTTAAATTAAAT
22537434 AATATATTAAAAATTTAAATTAAA
1 AATATATTAAAAATTTAAATTAAA
22537458 AAAATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
AATATATTAAAAATTTAAATTAAAT
Found at i:22537466 original size:25 final size:24
Alignment explanation
Indices: 22537409--22537468 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 24
22537399 AAATCTATTT
*
22537409 AAATATATTAAAAATTATATTAAA
1 AAATATATTAAAAATTAAATTAAA
*
22537433 TAATATATTAAAAATTTAAATTAAA
1 AAATATATTAAAAA-TTAAATTAAA
22537458 AAA-ATTATTAA
1 AAATA-TATTAA
22537469 TCAAATTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.45
25 17 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AAATATATTAAAAATTAAATTAAA
Found at i:22542935 original size:18 final size:18
Alignment explanation
Indices: 22542893--22542926 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22542883 CAATGCAATT
22542893 ATTTTTATTTTCTTTTAC
1 ATTTTTATTTTCTTTTAC
*
22542911 CTTTTTATTTT-TTTTA
1 ATTTTTATTTTCTTTTA
22542927 TATATTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (18 bp):
ATTTTTATTTTCTTTTAC
Found at i:22544111 original size:26 final size:27
Alignment explanation
Indices: 22544082--22544149 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 27
22544072 ATTAAACTTA
* *
22544082 TTTAAAAAATAAATATGATAAATA-AT
1 TTTAAAAAATAAATATAAAAAATACAT
*
22544108 TTTAAAATCATAAA-ATAAAAAATACAT
1 TTTAAAA-AATAAATATAAAAAATACAT
**
22544135 GATAAAAAATAAATA
1 TTTAAAAAATAAATA
22544150 AATATTTGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (27 bp):
TTTAAAAAATAAATATAAAAAATACAT
Found at i:22544617 original size:23 final size:21
Alignment explanation
Indices: 22544587--22544639 Score: 88
Period size: 23 Copynumber: 2.4 Consensus size: 21
22544577 TTTGAAATTA
22544587 ATAAAATATTATTTTTTAAAAAT
1 ATAAAATATTATTTTTT--AAAT
22544610 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
22544631 ATAAAATAT
1 ATAAAATAT
22544640 AAAATTATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 13 0.43
23 17 0.57
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATAAAATATTATTTTTTAAAT
Found at i:22544680 original size:27 final size:27
Alignment explanation
Indices: 22544629--22544681 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
22544619 TATTTTTTAA
* *
22544629 ATATAAAATATAAAATTATATAAATAC
1 ATATAAAATAAAAAATTATAAAAATAC
22544656 ATATATAAATAAAAAATT-TAAAAATA
1 ATATA-AAATAAAAAATTATAAAAATA
22544682 ATTTTTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (27 bp):
ATATAAAATAAAAAATTATAAAAATAC
Found at i:22550339 original size:59 final size:59
Alignment explanation
Indices: 22550238--22550351 Score: 147
Period size: 59 Copynumber: 1.9 Consensus size: 59
22550228 TAATTTTTTT
* * * * * *
22550238 AAATATATATTAAAAGATATGTATTATTATTTTAATCATATTTGTAAAGTTAAAATTTA
1 AAATATACATTAAAAAATATATATTATTATCTTAATCATATTTATAAAATTAAAATTTA
* **
22550297 AAATATACATTAAAAAATATATATTATTATCTTAGTTTTATTTATAAAATTAAAA
1 AAATATACATTAAAAAATATATATTATTATCTTAATCATATTTATAAAATTAAAA
22550352 AATTTAACTA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
59 46 1.00
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.45
Consensus pattern (59 bp):
AAATATACATTAAAAAATATATATTATTATCTTAATCATATTTATAAAATTAAAATTTA
Found at i:22550386 original size:2 final size:2
Alignment explanation
Indices: 22550379--22550412 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
22550369 ATTTAATAAT
22550379 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22550413 GGGCGAAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22551458 original size:11 final size:11
Alignment explanation
Indices: 22551427--22551465 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
22551417 ATTTAAAATT
*
22551427 TATTATTTTCA
1 TATTATTTTTA
22551438 TA-TATATTTTA
1 TATTAT-TTTTA
22551449 TATTATTTTTA
1 TATTATTTTTA
22551460 TATTAT
1 TATTAT
22551466 ATCATCGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
10 3 0.12
11 19 0.76
12 3 0.12
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (11 bp):
TATTATTTTTA
Found at i:22552031 original size:20 final size:19
Alignment explanation
Indices: 22551982--22552033 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
22551972 AATATATGAG
* *
22551982 ATTA-AATTTAAATATTTT
1 ATTATAATTTAAAAATTAT
*
22552000 ATTATACCTTTAAAAATTAT
1 ATTATA-ATTTAAAAATTAT
22552020 ATTTATAATTTAAA
1 A-TTATAATTTAAA
22552034 TTATATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 4 0.15
19 1 0.04
20 17 0.63
21 5 0.19
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTATAATTTAAAAATTAT
Found at i:22554895 original size:8 final size:8
Alignment explanation
Indices: 22554884--22554908 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
22554874 ATTAAATTTT
22554884 AAAATTAA
1 AAAATTAA
22554892 AAAATTAA
1 AAAATTAA
22554900 AAAATTAA
1 AAAATTAA
22554908 A
1 A
22554909 GTAAATTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAATTAA
Found at i:22555104 original size:11 final size:11
Alignment explanation
Indices: 22555058--22555108 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
22555048 TGAATCAATA
22555058 AAATTTAATTT
1 AAATTTAATTT
*
22555069 -ATTTTAATTT
1 AAATTTAATTT
* * **
22555079 TAATTAAATAA
1 AAATTTAATTT
22555090 AAATTTAATTT
1 AAATTTAATTT
22555101 AAATTTAA
1 AAATTTAA
22555109 ATTTTATAAT
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
10 9 0.30
11 21 0.70
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
AAATTTAATTT
Found at i:22556669 original size:22 final size:21
Alignment explanation
Indices: 22556635--22556676 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
22556625 CAAATATCTA
*
22556635 TAAATATTGTTTAAGAAAAGT
1 TAAATATTATTTAAGAAAAGT
22556656 TAAATTATTATTTAAGAAAAG
1 TAAA-TATTATTTAAGAAAAG
22556677 AATTTTGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (21 bp):
TAAATATTATTTAAGAAAAGT
Found at i:22558123 original size:22 final size:22
Alignment explanation
Indices: 22558096--22558142 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
22558086 TAAAAATATA
* *
22558096 AAATATATTTTTTAATTTTATT
1 AAATATATTTATGAATTTTATT
*
22558118 AAATATATTTATGATTTTTATT
1 AAATATATTTATGAATTTTATT
22558140 AAA
1 AAA
22558143 AATTTAAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
AAATATATTTATGAATTTTATT
Found at i:22560662 original size:19 final size:19
Alignment explanation
Indices: 22560638--22560678 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
22560628 AACATTCAGT
*
22560638 ATTGAGTTTGCTTTCCATA
1 ATTGAGTTTGCTTTCAATA
22560657 ATTGAGTTTGCTTTCAATA
1 ATTGAGTTTGCTTTCAATA
22560676 ATT
1 ATT
22560679 CTTACAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.49
Consensus pattern (19 bp):
ATTGAGTTTGCTTTCAATA
Found at i:22560784 original size:2 final size:2
Alignment explanation
Indices: 22560772--22560806 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
22560762 GATATAAATG
*
22560772 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22560807 GAACCAAGTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:22566167 original size:18 final size:18
Alignment explanation
Indices: 22566144--22566201 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
22566134 TCATCATTTG
22566144 ATATATATGCATATATGTAT
1 ATATATATGCATATA--TAT
* *
22566164 ATATACATGCATATACAT
1 ATATATATGCATATATAT
* *
22566182 ATATGTGTGCATATATAT
1 ATATATATGCATATATAT
22566200 AT
1 AT
22566202 TTGCATTTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 18 0.56
20 14 0.44
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (18 bp):
ATATATATGCATATATAT
Found at i:22566184 original size:20 final size:20
Alignment explanation
Indices: 22566144--22566185 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
22566134 TCATCATTTG
* **
22566144 ATATATATGCATATATGTAT
1 ATATACATGCATATACATAT
22566164 ATATACATGCATATACATAT
1 ATATACATGCATATACATAT
22566184 AT
1 AT
22566186 GTGTGCATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (20 bp):
ATATACATGCATATACATAT
Found at i:22566419 original size:20 final size:22
Alignment explanation
Indices: 22566368--22566421 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
22566358 TTATATCAAG
*
22566368 ATATTTAAAAATTTGTTATAAT
1 ATATTTAAAAATTTGATATAAT
** *
22566390 ATATAAAAAAATTT-ATAT-TT
1 ATATTTAAAAATTTGATATAAT
22566410 ATATTTAAAAAT
1 ATATTTAAAAAT
22566422 ATTTTTTATA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 11 0.42
21 3 0.12
22 12 0.46
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
ATATTTAAAAATTTGATATAAT
Found at i:22568073 original size:2 final size:2
Alignment explanation
Indices: 22568061--22568097 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
22568051 AAACCACAAC
*
22568061 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22568098 GTATCAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:22569087 original size:20 final size:20
Alignment explanation
Indices: 22569062--22569105 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
22569052 TCAAATAGAT
*
22569062 AGAAAGTGATAGATGAAGAA
1 AGAAAGTGATAGATAAAGAA
*
22569082 AGAAAGTGATAGGTAAAGAA
1 AGAAAGTGATAGATAAAGAA
22569102 AGAA
1 AGAA
22569106 GGAACCTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.30, T:0.14
Consensus pattern (20 bp):
AGAAAGTGATAGATAAAGAA
Found at i:22570146 original size:30 final size:30
Alignment explanation
Indices: 22570088--22570156 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 30
22570078 TAATATTTTT
* * *
22570088 TAAATTAATATCGAATCAATTTAGAATATTA
1 TAAAATAATATC-AATCAATCTAAAATATTA
22570119 CTAAAATAATATC-ATCAATCTAAAATATTA
1 -TAAAATAATATCAATCAATCTAAAATATTA
22570149 TCAAAATA
1 T-AAAATA
22570157 TTATTAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 21 0.64
32 11 0.33
ACGTcount: A:0.52, C:0.10, G:0.03, T:0.35
Consensus pattern (30 bp):
TAAAATAATATCAATCAATCTAAAATATTA
Found at i:22571678 original size:69 final size:69
Alignment explanation
Indices: 22571603--22571738 Score: 236
Period size: 69 Copynumber: 2.0 Consensus size: 69
22571593 CGAGAAAAAA
*
22571603 AATGTTAGATATATACGAATAGGGGTGCAATCGAGTCGAGTTGATACAGTGAGAAACTCGAGCTC
1 AATGTTAGATATATACGAATAGGGGTGCAATCGAGTCGAGTCGATACAGTGAGAAACTCGAGCTC
22571668 GAAC
66 GAAC
* * *
22571672 AATGTTAGATATGTACGAGTAGGGGTGTAATCGAGTCGAGTCGATACAGTGAGAAACTCGAGCTC
1 AATGTTAGATATATACGAATAGGGGTGCAATCGAGTCGAGTCGATACAGTGAGAAACTCGAGCTC
22571737 GA
66 GA
22571739 GCTCGACTCC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (69 bp):
AATGTTAGATATATACGAATAGGGGTGCAATCGAGTCGAGTCGATACAGTGAGAAACTCGAGCTC
GAAC
Found at i:22572803 original size:22 final size:22
Alignment explanation
Indices: 22572778--22572824 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
22572768 TTAAATATGA
22572778 AAATATACTTT-TAATTTTTATT
1 AAATATA-TTTATAATTTTTATT
* *
22572800 AAATTTATTTATAATTTTTGTT
1 AAATATATTTATAATTTTTATT
22572822 AAA
1 AAA
22572825 ATTTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
AAATATATTTATAATTTTTATT
Found at i:22572833 original size:17 final size:16
Alignment explanation
Indices: 22572811--22572852 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
22572801 AATTTATTTA
22572811 TAATTTTTGTTAAAATT
1 TAATTTTTGTT-AAATT
*
22572828 TAATTTTT-TTTAATT
1 TAATTTTTGTTAAATT
*
22572843 TAATATTTGT
1 TAATTTTTGT
22572853 CGAATATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 11 0.50
16 3 0.14
17 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (16 bp):
TAATTTTTGTTAAATT
Found at i:22574312 original size:7 final size:7
Alignment explanation
Indices: 22574300--22574334 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
22574290 AGTGCAAGTC
22574300 ATTGAAG
1 ATTGAAG
22574307 ATTGAAG
1 ATTGAAG
22574314 ATTGAAG
1 ATTGAAG
22574321 ATTGAAG
1 ATTGAAG
22574328 ATTGAAG
1 ATTGAAG
22574335 CTATGGCTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (7 bp):
ATTGAAG
Found at i:22578618 original size:2 final size:2
Alignment explanation
Indices: 22578611--22578636 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
22578601 GAAAAGATAA
22578611 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
22578637 TTGATGAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22588476 original size:25 final size:24
Alignment explanation
Indices: 22588413--22588485 Score: 80
Period size: 24 Copynumber: 3.1 Consensus size: 24
22588403 TTTCAGACTC
*
22588413 ACATAGGATCACTAATCCAGATCA
1 ACATAGAATCACTAATCCAGATCA
* *
22588437 ACAGAAAAT-A--AATCCAGATCCA
1 ACATAGAATCACTAATCCAGAT-CA
*
22588459 ACATAGCATCACTAATCCAGATCA
1 ACATAGAATCACTAATCCAGATCA
22588483 ACA
1 ACA
22588486 AAAAAAAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
21 9 0.23
22 8 0.21
23 2 0.05
24 11 0.28
25 9 0.23
ACGTcount: A:0.47, C:0.26, G:0.10, T:0.18
Consensus pattern (24 bp):
ACATAGAATCACTAATCCAGATCA
Found at i:22589785 original size:24 final size:27
Alignment explanation
Indices: 22589728--22589784 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 27
22589718 TTTAAAAAAA
*
22589728 TTTTAATTTTAATTTTTATACTGTATT
1 TTTTAAATTTAATTTTTATACTGTATT
22589755 TCATTTAAATTTAATTTTTATA-T-TATT
1 T--TTTAAATTTAATTTTTATACTGTATT
22589782 TTT
1 TTT
22589785 ATTTGATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
25 2 0.07
27 6 0.22
28 1 0.04
29 18 0.67
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.67
Consensus pattern (27 bp):
TTTTAAATTTAATTTTTATACTGTATT
Found at i:22592136 original size:23 final size:23
Alignment explanation
Indices: 22592099--22592167 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 23
22592089 ATTAAATTTA
22592099 ATATGTTT-TAAAATCATTTTTTT
1 ATAT-TTTATAAAATCATTTTTTT
**
22592122 GA-ATTTTATAAAATC-TGATTTT
1 -ATATTTTATAAAATCATTTTTTT
* *
22592144 ATATTTTAAAAAATAATTTTTTT
1 ATATTTTATAAAATCATTTTTTT
22592167 A
1 A
22592168 AAATATTTAG
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
21 1 0.03
22 19 0.53
23 15 0.42
24 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.55
Consensus pattern (23 bp):
ATATTTTATAAAATCATTTTTTT
Found at i:22592328 original size:18 final size:19
Alignment explanation
Indices: 22592294--22592333 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
22592284 ATTTTTTAAC
* *
22592294 TTTATATTTTTATAAATCT
1 TTTACATTTTTATAAATAT
22592313 TTTACATTTTTA-AAATAT
1 TTTACATTTTTATAAATAT
22592331 TTT
1 TTT
22592334 GTTTTCATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTACATTTTTATAAATAT
Found at i:22592770 original size:23 final size:23
Alignment explanation
Indices: 22592751--22592805 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 23
22592741 ATCAAATTTT
22592751 AATTTTAAAAAAAAAAAAATATG
1 AATTTTAAAAAAAAAAAAATATG
*
22592774 ATTTTTAAAAAATTCAAAAAAATATG
1 AATTTTAAAAAA---AAAAAAATATG
*
22592800 TATTTT
1 AATTTT
22592806 TTAAATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 11 0.42
26 15 0.58
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (23 bp):
AATTTTAAAAAAAAAAAAATATG
Found at i:22592902 original size:23 final size:24
Alignment explanation
Indices: 22592857--22592920 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 24
22592847 AATATGAAAA
* *
22592857 ATTATAAAAAATCAAATTAATGAT
1 ATTATAAAAAATAAAAATAATGAT
*
22592881 ATTATAAAAAATTAAAAT-ATGAT
1 ATTATAAAAAATAAAAATAATGAT
*
22592904 TTTCA-AAAAAATAAAAA
1 ATT-ATAAAAAATAAAAA
22592921 ATATTATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 18 0.51
24 17 0.49
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (24 bp):
ATTATAAAAAATAAAAATAATGAT
Found at i:22592921 original size:24 final size:23
Alignment explanation
Indices: 22592886--22592930 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
22592876 ATGATATTAT
*
22592886 AAAAAATTAAAATATGATTTTCA
1 AAAAAATAAAAATATGATTTTCA
*
22592909 AAAAAATAAAAAATATTATTTT
1 AAAAAAT-AAAAATATGATTTT
22592931 TATTAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (23 bp):
AAAAAATAAAAATATGATTTTCA
Found at i:22593572 original size:16 final size:16
Alignment explanation
Indices: 22593551--22593581 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22593541 CTTCGATACG
*
22593551 ATAATATAATATAAAT
1 ATAATATAAAATAAAT
22593567 ATAATATAAAATAAA
1 ATAATATAAAATAAA
22593582 AATACGAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAATATAAAATAAAT
Found at i:22596127 original size:7 final size:6
Alignment explanation
Indices: 22596109--22596145 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
22596099 GATAATAATT
*
22596109 AATTTA AATTTA AATTT- TATTTA AA-TTA AATTTA AAT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AAT
22596146 AATTTATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 9 0.33
6 18 0.67
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
AATTTA
Found at i:22596130 original size:11 final size:11
Alignment explanation
Indices: 22596107--22596145 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
22596097 TCGATAATAA
*
22596107 TTAATTTAAAT
1 TTAAATTAAAT
**
22596118 TTAAATTTTAT
1 TTAAATTAAAT
22596129 TTAAATTAAAT
1 TTAAATTAAAT
22596140 TTAAAT
1 TTAAAT
22596146 AATTTATGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TTAAATTAAAT
Found at i:22596132 original size:17 final size:16
Alignment explanation
Indices: 22596110--22596141 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
22596100 ATAATAATTA
22596110 ATTTAAATTTAAATTTT
1 ATTTAAA-TTAAATTTT
22596127 ATTTAAATTAAATTT
1 ATTTAAATTAAATTT
22596142 AAATAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTAAATTAAATTTT
Found at i:22601393 original size:148 final size:147
Alignment explanation
Indices: 22601162--22601461 Score: 521
Period size: 148 Copynumber: 2.0 Consensus size: 147
22601152 CCATTAATTT
22601162 AAAATGCAATGAACTTGAGTACCAAAGCTTCAAAATAACCAAACAGATTGGAACCAACACACTGC
1 AAAATGCAATGAACTTGAGTACCAAAGCTTCAAAATAACCAAACAGATTGGAACCAACACACTGC
* *
22601227 ATAACTGAAATAACGAATAACGCGTGGGAAGGTCATTCATTAAAAACTAACAGAACTAGAGTACC
66 ATAACTGAAATAACGAATAACGCGCGGGAAGGTCATTCATTAAAAACTAACAGAACTACAGTACC
22601292 GAACTTTCAAAATAAGC
131 GAACTTTCAAAATAAGC
22601309 AAAATGCAATGAACTTGAGTACCAAA-CTTTCAAAATAACCAAAACAGATTGGAACCAACACACT
1 AAAATGCAATGAACTTGAGTACCAAAGC-TTCAAAATAACC-AAACAGATTGGAACCAACACACT
* * *
22601373 GCATAACTGAAATAAGGAATAATGCGCGGGAAGGTCATTCATTAAAAACTAACGGAACTACAGTA
64 GCATAACTGAAATAACGAATAACGCGCGGGAAGGTCATTCATTAAAAACTAACAGAACTACAGTA
*
22601438 CTGAACTTTCAAAATAAGC
129 CCGAACTTTCAAAATAAGC
22601457 AAAAT
1 AAAAT
22601462 ATATTTGGAA
Statistics
Matches: 145, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
146 1 0.01
147 38 0.26
148 106 0.73
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.20
Consensus pattern (147 bp):
AAAATGCAATGAACTTGAGTACCAAAGCTTCAAAATAACCAAACAGATTGGAACCAACACACTGC
ATAACTGAAATAACGAATAACGCGCGGGAAGGTCATTCATTAAAAACTAACAGAACTACAGTACC
GAACTTTCAAAATAAGC
Found at i:22608872 original size:186 final size:186
Alignment explanation
Indices: 22608631--22609016 Score: 574
Period size: 186 Copynumber: 2.1 Consensus size: 186
22608621 TAGAATTTGG
* *
22608631 GAATATATTTTTATTTTTTATTTTTTGCATGAAAGGGAAACAAATAATGTAGCCAGCTAATATTA
1 GAATATATTTTTATTTTTTATTTTTTGCATGAAAAGGAAACAAATAATATAGCCAGCTAATATTA
* **
22608696 GGATAATTATGGTTGAATATGTCAATGATAAGGTATATGGTTGTTTTTTTTTTTGGTAAGAAAAA
66 GGACAATTATGGTTGAATATGTCAATGATAAGACATATGGTTGTTTTTTTTTTTGGTAAGAAAAA
* * * * *
22608761 TTTGATGATAAATAGATTGTTCAGTCTCTCATATCAAGATAAGATATATCATTTAA
131 TCTAAGGATAAATAGATTATTCAGTCTCTCAGATCAAGATAAGATATATCATTTAA
* *
22608817 GAATATTTTTTTATTTTTTATTTTTTGCATGAAAAGGAAGCAAATAATATAGCCAGCTAATATTA
1 GAATATATTTTTATTTTTTATTTTTTGCATGAAAAGGAAACAAATAATATAGCCAGCTAATATTA
*
22608882 GGACAATTATGGTTGAATATGTCAATGATAAGACATATGGTTGTTTTTTTTTTTTGTAAGAAAAA
66 GGACAATTATGGTTGAATATGTCAATGATAAGACATATGGTTGTTTTTTTTTTTGGTAAGAAAAA
* * * * *
22608947 TCTAAGGGTAGATAGATTATTCAGTCTCTCAGGTCAGGATAAGATGTATCATATCTAA
131 TCTAAGGATAAATAGATTATTCAGTCTCTCAGATCAAGATAAGATATATCAT-T-TAA
* *
22609005 TAATTTATTTTT
1 GAATATATTTTT
22609017 TTGGTAAGAA
Statistics
Matches: 177, Mismatches: 21, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
186 164 0.93
187 1 0.01
188 12 0.07
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (186 bp):
GAATATATTTTTATTTTTTATTTTTTGCATGAAAAGGAAACAAATAATATAGCCAGCTAATATTA
GGACAATTATGGTTGAATATGTCAATGATAAGACATATGGTTGTTTTTTTTTTTGGTAAGAAAAA
TCTAAGGATAAATAGATTATTCAGTCTCTCAGATCAAGATAAGATATATCATTTAA
Found at i:22610778 original size:16 final size:18
Alignment explanation
Indices: 22610742--22610778 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
22610732 TATTTAATAT
*
22610742 TAAAATTAAAACTTTTTA
1 TAAAATTAAAACTTTTCA
22610760 TAAAATT-AAA-TTTTCA
1 TAAAATTAAAACTTTTCA
22610776 TAA
1 TAA
22610779 TTTTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 3 0.17
18 7 0.39
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (18 bp):
TAAAATTAAAACTTTTCA
Found at i:22610795 original size:25 final size:25
Alignment explanation
Indices: 22610767--22610819 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
22610757 TTATAAAATT
* * *
22610767 AAATTTTCATAATTTTTAATATAAA
1 AAATTTTAATAATTTTTAAAAAAAA
22610792 AAATTTTAATAATTTTTAAAAAAAA
1 AAATTTTAATAATTTTTAAAAAAAA
22610817 AAA
1 AAA
22610820 GAGAGAAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (25 bp):
AAATTTTAATAATTTTTAAAAAAAA
Found at i:22617833 original size:19 final size:20
Alignment explanation
Indices: 22617811--22617859 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
22617801 ATATAAAAAT
22617811 ATTTTATAAATTTTATT-AA
1 ATTTTATAAATTTTATTAAA
**
22617830 A-TTTATATTTTTTTATTAAA
1 ATTTTATA-AATTTTATTAAA
22617850 ATTTTA-AAAT
1 ATTTTATAAAT
22617860 CTATTTTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 6
0.70 0.12 0.18
Matches are distributed among these distances:
18 6 0.26
19 9 0.39
20 4 0.17
21 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTTTATAAATTTTATTAAA
Found at i:22617837 original size:40 final size:42
Alignment explanation
Indices: 22617740--22617837 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 42
22617730 TTATATTTAT
22617740 TTTATATTAAATATATATAAAATATAAAAATTATAATATTAAA
1 TTTATATTAAAT-TATATAAAATATAAAAATTATAATATTAAA
* **
22617783 TTTATATT-AA-TATATCAAATATAAAAA-TATTTTA-TAAA
1 TTTATATTAAATTATATAAAATATAAAAATTATAATATTAAA
22617821 TTT-TATTAAATTTATAT
1 TTTATATTAAA-TTATAT
22617838 TTTTTTATTA
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
37 4 0.08
38 9 0.18
39 5 0.10
40 21 0.43
42 2 0.04
43 8 0.16
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (42 bp):
TTTATATTAAATTATATAAAATATAAAAATTATAATATTAAA
Found at i:22618423 original size:13 final size:13
Alignment explanation
Indices: 22618405--22618430 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22618395 TTAAGTTTTA
22618405 AAAAAATTAAAAT
1 AAAAAATTAAAAT
22618418 AAAAAATTAAAAT
1 AAAAAATTAAAAT
22618431 TCATTAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAAATTAAAAT
Found at i:22618577 original size:27 final size:27
Alignment explanation
Indices: 22618525--22618577 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
22618515 GACTAACTCG
* *
22618525 AATTCAAATATATATTATATATAAATT
1 AATTCAAATATATATAATATAAAAATT
*
22618552 AATTCACATATATATAA-ATTAAAAAT
1 AATTCAAATATATATAATA-TAAAAAT
22618578 AAAATTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 1 0.05
27 21 0.95
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.40
Consensus pattern (27 bp):
AATTCAAATATATATAATATAAAAATT
Found at i:22624129 original size:3 final size:3
Alignment explanation
Indices: 22624121--22624154 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
22624111 AAAATATCGG
22624121 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
22624155 GGTAGAATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:22624775 original size:11 final size:11
Alignment explanation
Indices: 22624745--22624787 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
22624735 CAAAAATTTA
*
22624745 AAATATGATAT
1 AAATATAATAT
22624756 GATAATATAATAT
1 -A-AATATAATAT
22624769 AAATATAATAT
1 AAATATAATAT
*
22624780 AAAAATAA
1 AAATATAA
22624788 AATACAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 17 0.61
12 2 0.07
13 9 0.32
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (11 bp):
AAATATAATAT
Found at i:22624779 original size:24 final size:24
Alignment explanation
Indices: 22624745--22624806 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
22624735 CAAAAATTTA
* * *
22624745 AAATATGATATGATAATATAATAT
1 AAATATAATATGATAATAAAATAC
* *
22624769 AAATATAATATAAAAATAAAATAC
1 AAATATAATATGATAATAAAATAC
22624793 AAA-AGTAATATGAT
1 AAATA-TAATATGAT
22624807 TAAAATTATT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
23 1 0.03
24 29 0.97
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (24 bp):
AAATATAATATGATAATAAAATAC
Found at i:22625537 original size:10 final size:10
Alignment explanation
Indices: 22625520--22625560 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
22625510 ATAATTATTT
22625520 TATATTTAAA
1 TATATTTAAA
*
22625530 TTTATTTAAA
1 TATATTTAAA
*
22625540 TATATTAAAA
1 TATATTTAAA
22625550 TATATATTAAA
1 TATAT-TTAAA
22625561 ATAATATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
10 22 0.85
11 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
TATATTTAAA
Found at i:22625556 original size:12 final size:12
Alignment explanation
Indices: 22625539--22625573 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
22625529 ATTTATTTAA
22625539 ATATATTAAAAT
1 ATATATTAAAAT
22625551 ATATATTAAAAT
1 ATATATTAAAAT
22625563 A-ATATATAAAA
1 ATATAT-TAAAA
22625574 AATTTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 4 0.18
12 18 0.82
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
ATATATTAAAAT
Found at i:22626527 original size:79 final size:80
Alignment explanation
Indices: 22626408--22626568 Score: 245
Period size: 80 Copynumber: 2.0 Consensus size: 80
22626398 TTTTTAAAAG
* * *
22626408 AAAATTTAGGGTTTTGTAGTTTTGAGGGGCTTGTTTATAATCTAAATTTAGCTTGAAATTCGA-T
1 AAAATTTAGGGTTTTGGAGTTTT-AGGGGCTTGTTTATAATCAAAATTTAGCTTGAAATTAGATT
22626472 TTTTTTATGTTAATTT
65 TTTTTTATGTTAATTT
*
22626488 AAAATTTAGGGTTTTGGAGTTGTT-GGGGCTTGTTTATAATCAAAATTTAGTTTGAAATTAGATT
1 AAAATTTAGGGTTTTGGAGTT-TTAGGGGCTTGTTTATAATCAAAATTTAGCTTGAAATTAGATT
*
22626552 TTTTTTGTGTTAATTT
65 TTTTTTATGTTAATTT
22626568 A
1 A
22626569 CTGTCGAATG
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
79 35 0.47
80 37 0.50
81 2 0.03
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.50
Consensus pattern (80 bp):
AAAATTTAGGGTTTTGGAGTTTTAGGGGCTTGTTTATAATCAAAATTTAGCTTGAAATTAGATTT
TTTTTATGTTAATTT
Found at i:22642334 original size:21 final size:21
Alignment explanation
Indices: 22642273--22642335 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
22642263 AATTTGATTT
* *
22642273 ATAAATTTATATATTATTTTAA
1 ATAAATTTTTATA-TATATTAA
*
22642295 TTAAATTTTTA-ATATATTAA
1 ATAAATTTTTATATATATTAA
*
22642315 ATAAATTTTTATATAAATTAA
1 ATAAATTTTTATATATATTAA
22642336 TTATTTTTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 17 0.49
21 9 0.26
22 9 0.26
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATAAATTTTTATATATATTAA
Found at i:22642374 original size:21 final size:21
Alignment explanation
Indices: 22642348--22642389 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
22642338 ATTTTTATTT
22642348 TATAAA-AATTAAAAATATATA
1 TATAAATAA-TAAAAATATATA
22642369 TATAAATAATAAAAATATATA
1 TATAAATAATAAAAATATATA
22642390 ATTTAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
TATAAATAATAAAAATATATA
Found at i:22642453 original size:29 final size:28
Alignment explanation
Indices: 22642427--22642496 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
22642417 CTTAATTTAA
* *
22642427 AATTTAAATTTAATTTAATATATATTTAA
1 AATTTAAATTTAATATAA-ATAAATTTAA
* *
22642456 TATTTAAATTTAATATAAATAAATATAA
1 AATTTAAATTTAATATAAATAAATTTAA
**
22642484 AAAATAAATTTAA
1 AATTTAAATTTAA
22642497 ATCGTATTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 18 0.53
29 16 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (28 bp):
AATTTAAATTTAATATAAATAAATTTAA
Found at i:22642480 original size:23 final size:23
Alignment explanation
Indices: 22642434--22642481 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
22642424 TAAAATTTAA
* *
22642434 ATTTAATTTAATATATATTTAAT
1 ATTTAATTTAATATATAATAAAT
22642457 ATTTAAATTTAATATA-AATAAAT
1 ATTT-AATTTAATATATAATAAAT
22642480 AT
1 AT
22642482 AAAAAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
ATTTAATTTAATATATAATAAAT
Found at i:22643451 original size:29 final size:29
Alignment explanation
Indices: 22643394--22643450 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
22643384 AAATATGTTA
**
22643394 ATTTTTATTTTTATATTATTTTTTAAAAT
1 ATTTTTATTTTTATATTATTAATTAAAAT
22643423 ATTTTTATTTTTA-ATTATATAAATTAAA
1 ATTTTTATTTTTATATTAT-T-AATTAAA
22643451 TTTAATGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.21
29 14 0.58
30 5 0.21
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (29 bp):
ATTTTTATTTTTATATTATTAATTAAAAT
Found at i:22644016 original size:19 final size:19
Alignment explanation
Indices: 22643989--22644030 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
22643979 TTTTTAATTA
* *
22643989 TAATTATAATAATTTTTTT
1 TAATAATAATAATTATTTT
*
22644008 TAATAATAATTATTATTTT
1 TAATAATAATAATTATTTT
22644027 TAAT
1 TAAT
22644031 CTTATCGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TAATAATAATAATTATTTT
Found at i:22646886 original size:17 final size:17
Alignment explanation
Indices: 22646841--22646886 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
22646831 TAGAAAAAAT
22646841 TTTGAATTA-TTTCAAA
1 TTTGAATTATTTTCAAA
*
22646857 TTTTAATTATTTTC-AA
1 TTTGAATTATTTTCAAA
22646873 TTTGAATATATTTT
1 TTTGAAT-TATTTT
22646887 TTGAATTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 16 0.62
17 10 0.38
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (17 bp):
TTTGAATTATTTTCAAA
Found at i:22648868 original size:43 final size:43
Alignment explanation
Indices: 22648805--22648890 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
22648795 GGAATTGAAT
*
22648805 GAGAGTGAAAAGTATGGGGATATTGTGATTGCTAACAAAGAAA
1 GAGAGTGAAAAGTATAGGGATATTGTGATTGCTAACAAAGAAA
22648848 GAGAGTGAAAAGTATAGGGATATTGTGATTGCTAACAAAGAAA
1 GAGAGTGAAAAGTATAGGGATATTGTGATTGCTAACAAAGAAA
22648891 AGGTACAGAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.43, C:0.05, G:0.29, T:0.23
Consensus pattern (43 bp):
GAGAGTGAAAAGTATAGGGATATTGTGATTGCTAACAAAGAAA
Found at i:22649110 original size:63 final size:63
Alignment explanation
Indices: 22648996--22649184 Score: 362
Period size: 63 Copynumber: 3.0 Consensus size: 63
22648986 TACAATTTGA
22648996 TTGCTTTGGGTGAGTTAGCTTCTC-GGGGTACACATATTATGGTAGTAATGATTGGTTAAAAG
1 TTGCTTTGGGTGAGTTAGCTTCTCGGGGGTACACATATTATGGTAGTAATGATTGGTTAAAAG
22649058 TTGCTTTGGGTGAGTTAGCTTCTCGGGGGTACACATATTATGGTAGTAATGATTGGTTAAAAG
1 TTGCTTTGGGTGAGTTAGCTTCTCGGGGGTACACATATTATGGTAGTAATGATTGGTTAAAAG
*
22649121 TTGCTTTGGGTGAGTTAGTTTCTCGGGGGTACACATATTATGGTAGTAATGATTGGTTAAAAG
1 TTGCTTTGGGTGAGTTAGCTTCTCGGGGGTACACATATTATGGTAGTAATGATTGGTTAAAAG
22649184 T
1 T
22649185 GTACAAGAAT
Statistics
Matches: 125, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
62 24 0.19
63 101 0.81
ACGTcount: A:0.24, C:0.09, G:0.30, T:0.38
Consensus pattern (63 bp):
TTGCTTTGGGTGAGTTAGCTTCTCGGGGGTACACATATTATGGTAGTAATGATTGGTTAAAAG
Found at i:22663245 original size:27 final size:27
Alignment explanation
Indices: 22663193--22663245 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
22663183 TTAAAATTAA
* *
22663193 ATTAATTAAATTATTTTATTTTATTTT
1 ATTAATTAAATTAATTTATTTAATTTT
*
22663220 ATTAATTGAATTGAATTTA-TTAATTT
1 ATTAATTAAATT-AATTTATTTAATTT
22663246 AAAAAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (27 bp):
ATTAATTAAATTAATTTATTTAATTTT
Found at i:22663637 original size:13 final size:13
Alignment explanation
Indices: 22663619--22663643 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22663609 AATCAAATTA
22663619 AATTAATTCAATC
1 AATTAATTCAATC
22663632 AATTAATTCAAT
1 AATTAATTCAAT
22663644 TAAAACCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
AATTAATTCAATC
Found at i:22670310 original size:40 final size:41
Alignment explanation
Indices: 22670237--22670318 Score: 105
Period size: 40 Copynumber: 2.0 Consensus size: 41
22670227 TCTCTTAAAT
* *
22670237 TAAAGTAAGATGTGTCGTACTTAATAATATAAAATAAGTGA
1 TAAAGTAAGATGTGTCGTACTTAACAATATAAAATAAATGA
* *
22670278 TAAA-TAAGATGTGTCGTA-TCTAACAGTCTAAAATAAATGA
1 TAAAGTAAGATGTGTCGTACT-TAACAATATAAAATAAATGA
22670318 T
1 T
22670319 TACAAGTCGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.03
40 31 0.86
41 4 0.11
ACGTcount: A:0.45, C:0.07, G:0.16, T:0.32
Consensus pattern (41 bp):
TAAAGTAAGATGTGTCGTACTTAACAATATAAAATAAATGA
Found at i:22671477 original size:23 final size:23
Alignment explanation
Indices: 22671450--22671533 Score: 105
Period size: 23 Copynumber: 3.5 Consensus size: 23
22671440 ATTTAATTAA
* *
22671450 ATTAAATAAATTTATTCATAAAT
1 ATTAAATAAATATATTTATAAAT
*
22671473 ATTAAATAAATATATTTACAAAT
1 ATTAAATAAATATATTTATAAAT
22671496 ATTTATAAATAAATATATTTATAAAT
1 A--T-TAAATAAATATATTTATAAAT
*
22671522 AATAAATAAATA
1 ATTAAATAAATA
22671534 AATCTTAAAC
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
23 31 0.58
25 1 0.02
26 21 0.40
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
ATTAAATAAATATATTTATAAAT
Found at i:22671511 original size:26 final size:27
Alignment explanation
Indices: 22671475--22671536 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
22671465 TCATAAATAT
**
22671475 TAAATAAATATATTTACAAAT-ATTTA
1 TAAATAAATATATTTACAAATAATAAA
*
22671501 TAAATAAATATATTTATAAATAATAAA
1 TAAATAAATATATTTACAAATAATAAA
22671528 TAAATAAAT
1 TAAATAAAT
22671537 CTTAAACCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 20 0.62
27 12 0.38
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (27 bp):
TAAATAAATATATTTACAAATAATAAA
Found at i:22671548 original size:23 final size:24
Alignment explanation
Indices: 22671500--22671559 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 24
22671490 ACAAATATTT
* *
22671500 ATAAATAAATATAT-TTATAAATA
1 ATAAATAAATAAATCTTATAAACA
*
22671523 ATAAATAAATAAATCTTA-AACCA
1 ATAAATAAATAAATCTTATAAACA
22671546 AT--ATAAATAAATCT
1 ATAAATAAATAAATCT
22671560 AAATAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 12 0.36
23 18 0.55
24 3 0.09
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (24 bp):
ATAAATAAATAAATCTTATAAACA
Found at i:22671568 original size:20 final size:21
Alignment explanation
Indices: 22671517--22671583 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 21
22671507 AATATATTTA
*
22671517 TAAATAATAAATAAATAAATCT
1 TAAATAA-ATATAAATAAATCT
**
22671539 TAAACCAATATAAATAAATC-
1 TAAATAAATATAAATAAATCT
* *
22671559 TAAATAAATATAAACAAATTT
1 TAAATAAATATAAATAAATCT
22671580 TAAA
1 TAAA
22671584 ATAAGAAATA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
20 16 0.43
21 16 0.43
22 5 0.14
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (21 bp):
TAAATAAATATAAATAAATCT
Found at i:22671720 original size:32 final size:29
Alignment explanation
Indices: 22671651--22671740 Score: 90
Period size: 32 Copynumber: 2.9 Consensus size: 29
22671641 GAATGAATTT
22671651 TAAATAAATTAAAATAAATTTATTTATGAA
1 TAAATAAA-TAAAATAAATTTATTTATGAA
*
22671681 TACAAATAAATAAAATAAATGTTTATTTATTTAA
1 T--AAATAAATAAAATAAA--TTTATTTA-TGAA
* *
22671715 TAAATAAATATAACAATATTTATTTA
1 TAAATAAATAAAATAA-ATTTATTTA
22671741 AAATTATTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
30 1 0.02
31 17 0.33
32 20 0.39
33 9 0.18
34 4 0.08
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (29 bp):
TAAATAAATAAAATAAATTTATTTATGAA
Found at i:22671724 original size:36 final size:32
Alignment explanation
Indices: 22671651--22671740 Score: 89
Period size: 31 Copynumber: 2.8 Consensus size: 32
22671641 GAATGAATTT
22671651 TAAATAAATTAAAATAAATTTATTTATGAATA
1 TAAATAAATTAAAATAAATTTATTTATGAATA
* **
22671683 CAAATAAA-TAAAATAAATGTTTATTTATTTA-A
1 TAAATAAATTAAAATAAA--TTTATTTATGAATA
22671715 TAAATAAATATAACAAT--ATTTATTTA
1 TAAATAAAT-TAA-AATAAATTTATTTA
22671741 AAATTATTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
31 17 0.35
32 15 0.31
33 11 0.22
34 3 0.06
35 3 0.06
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (32 bp):
TAAATAAATTAAAATAAATTTATTTATGAATA
Found at i:22672579 original size:18 final size:19
Alignment explanation
Indices: 22672539--22672579 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
22672529 CTATTGTTTG
* *
22672539 ATTTTAAAATAATTTATTA
1 ATTTTAAAATAATTAAATA
22672558 ATTTTAAAAT-ATTAAATA
1 ATTTTAAAATAATTAAATA
22672576 ATTT
1 ATTT
22672580 AAATTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTTAAAATAATTAAATA
Found at i:22675309 original size:15 final size:16
Alignment explanation
Indices: 22675272--22675309 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
22675262 ATAAAAAATT
22675272 TTAATAATAAATTTATA
1 TTAA-AATAAATTTATA
22675289 TT-AAATAAATTT-TA
1 TTAAAATAAATTTATA
22675303 TTAAAAT
1 TTAAAAT
22675310 TAATATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.20
15 13 0.65
16 1 0.05
17 2 0.10
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATAAATTTATA
Found at i:22675318 original size:16 final size:14
Alignment explanation
Indices: 22675263--22675307 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
22675253 ATAATTACAA
*
22675263 TAAA-AAATTTTAA
1 TAAATAAATTTTAT
22675276 T-AATAAATTTATAT
1 TAAATAAATTT-TAT
22675290 TAAATAAATTTTAT
1 TAAATAAATTTTAT
22675304 TAAA
1 TAAA
22675308 ATTAATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 2 0.07
13 7 0.25
14 10 0.36
15 9 0.32
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAAATAAATTTTAT
Found at i:22675319 original size:27 final size:28
Alignment explanation
Indices: 22675263--22675321 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
22675253 ATAATTACAA
*
22675263 TAAA-AAATTTTAATAATAAATTTATAT
1 TAAATAAATTTTAATAATAAATTAATAT
*
22675290 TAAATAAATTTT-ATTA-AAATTAATATT
1 TAAATAAATTTTAATAATAAATTAATA-T
22675317 TAAAT
1 TAAAT
22675322 TTTACTGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 8 0.29
27 13 0.46
28 7 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
TAAATAAATTTTAATAATAAATTAATAT
Found at i:22680020 original size:24 final size:23
Alignment explanation
Indices: 22679967--22680021 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
22679957 TTTAAGAATA
*
22679967 GTAATACTATTTTAAAAAGATTTT
1 GTAATA-TAATTTAAAAAGATTTT
22679991 GT--TATAATTTAATAAAGATTTT
1 GTAATATAATTTAA-AAAGATTTT
*
22680013 TTAATATAA
1 GTAATATAA
22680022 AATATAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 7 0.27
22 12 0.46
24 7 0.27
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (23 bp):
GTAATATAATTTAAAAAGATTTT
Found at i:22680030 original size:137 final size:140
Alignment explanation
Indices: 22679840--22680119 Score: 512
Period size: 137 Copynumber: 2.0 Consensus size: 140
22679830 AATATAAATA
22679840 AAAAAGATTTTTGTTATAATTTAATAATAGATATTTTCAATATAAAATATAAATATTTTAACAGT
1 AAAAAGATTTTTGTTATAATTTAATAATAGATATTTTCAATATAAAATATAAATATTTTAACAGT
22679905 ACAAATATTTTAATAATAAATATTACTATTTTAATATTAATAAAAATAATATTTTAAGAATAGTA
66 ACAAATATTTTAATAATAAATATTACTATTTTAATATTAATAAAAATAATATTTTAAGAATAGTA
22679970 ATACTATTTT
131 ATACTATTTT
*
22679980 AAAAAGA-TTTTGTTATAATTTAATAA-AGAT-TTTTTAATATAAAATATAAATATTTTAACAGT
1 AAAAAGATTTTTGTTATAATTTAATAATAGATATTTTCAATATAAAATATAAATATTTTAACAGT
* *
22680042 ATAAATATTTTAATAATAAATATTACTATTTTAATATTCATAAAAATAATATTTTAAGAATAGTA
66 ACAAATATTTTAATAATAAATATTACTATTTTAATATTAATAAAAATAATATTTTAAGAATAGTA
22680107 ATACTATTTT
131 ATACTATTTT
22680117 AAA
1 AAA
22680120 TATTTTAAAA
Statistics
Matches: 137, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
137 107 0.78
138 4 0.03
139 19 0.14
140 7 0.05
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.44
Consensus pattern (140 bp):
AAAAAGATTTTTGTTATAATTTAATAATAGATATTTTCAATATAAAATATAAATATTTTAACAGT
ACAAATATTTTAATAATAAATATTACTATTTTAATATTAATAAAAATAATATTTTAAGAATAGTA
ATACTATTTT
Found at i:22680035 original size:21 final size:20
Alignment explanation
Indices: 22680011--22680077 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 20
22680001 AATAAAGATT
22680011 TTTTAATATAAAATATAAATA
1 TTTTAATA-AAAATATAAATA
* *
22680032 -TTT--TAACAGTATAAATA
1 TTTTAATAAAAATATAAATA
* *
22680049 TTTTAATAATAAATATTACTA
1 TTTTAATAA-AAATATAAATA
22680070 TTTTAATA
1 TTTTAATA
22680078 TTCATAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
17 10 0.28
18 5 0.14
20 6 0.17
21 15 0.42
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.46
Consensus pattern (20 bp):
TTTTAATAAAAATATAAATA
Found at i:22680062 original size:15 final size:16
Alignment explanation
Indices: 22680025--22680065 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
22680015 AATATAAAAT
22680025 ATAAATATTTTAACAG
1 ATAAATATTTTAACAG
*
22680041 TATAAATATTTTAATA-
1 -ATAAATATTTTAACAG
22680057 ATAAATATT
1 ATAAATATT
22680066 ACTATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.39
17 14 0.61
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
ATAAATATTTTAACAG
Found at i:22680172 original size:137 final size:136
Alignment explanation
Indices: 22679878--22680153 Score: 421
Period size: 137 Copynumber: 2.0 Consensus size: 136
22679868 AGATATTTTC
22679878 AATATAAAATATAAATATTTTAACAGTACAAATATTTTAATAATAAATATTACTATTTTAATATT
1 AATATAAAATATAAATATTTTAACAGTACAAATATTTTAATAATAAATATTACTATTTTAATATT
*** *
22679943 AATAAAAATAATATTTTAAGAATAGTAATACTATTTTAAAAAGATTTTGTTATAATTTAATAAAG
66 AATAAAAATAATATTTTAAGAATAGTAATACTATTTT-AAAAGATTTTAAAATAATTAAATAAAG
* ** *
22680008 ATTTTTT
130 AATAATA
*
22680015 AATATAAAATATAAATATTTTAACAGTATAAATATTTTAATAATAAATATTACTATTTTAATATT
1 AATATAAAATATAAATATTTTAACAGTACAAATATTTTAATAATAAATATTACTATTTTAATATT
* *
22680080 CATAAAAATAATATTTTAAGAATAGTAATACTATTTT-AAATATTTTAAAAT-ATTAATATAAAG
66 AATAAAAATAATATTTTAAGAATAGTAATACTATTTTAAAAGATTTTAAAATAATTAA-ATAAAG
22680143 AATAATA
130 AATAATA
22680150 AATA
1 AATA
22680154 GTTTTATTTT
Statistics
Matches: 127, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
134 4 0.03
135 23 0.18
137 100 0.79
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (136 bp):
AATATAAAATATAAATATTTTAACAGTACAAATATTTTAATAATAAATATTACTATTTTAATATT
AATAAAAATAATATTTTAAGAATAGTAATACTATTTTAAAAGATTTTAAAATAATTAAATAAAGA
ATAATA
Found at i:22680198 original size:19 final size:19
Alignment explanation
Indices: 22680174--22680212 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22680164 AAGTATTTTT
22680174 ATATT-AATATAATGTATTA
1 ATATTAAATATAAT-TATTA
*
22680193 ATATTAAATATTATTATTA
1 ATATTAAATATAATTATTA
22680212 A
1 A
22680213 AATATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
ATATTAAATATAATTATTA
Found at i:22681442 original size:327 final size:326
Alignment explanation
Indices: 22680776--22683312 Score: 2414
Period size: 328 Copynumber: 7.8 Consensus size: 326
22680766 TGGTAGTGGA
* * * * * * *
22680776 TAGTTAAGAAGAAAGCAATAAATGGCTGAATTTCTTTATGGAAAATTTTTT-GTTATTATAACAG
1 TAGTTAGGAAGAATGCAACAAATGGCTGAACTTCTTCAT-GAAAATTTTTTAGTTACTACAACAG
* * *
22680840 ATAAAATAATTTAAAATCAATAATTT-AATTAATTTTCATCTTATTTTGT-TCAATTGATCATGG
65 ATAAAACAATTTAAAATCAAT-ATTTCAATTAATTTTCACCCTATTTTGTCT-AATTGATCATGG
* * * * * * * * * **
22680903 GTCTTAGATCAACTTATTAATATT-GAGATTGGGATGGTCTAATTTAATTAAGTATAAATCTATA
128 GTCTTGGACCGACATATTAATATTAG-GATTGGGATGGCCTAACTTAATTAGGTATATATCCACG
* * * * * *
22680967 TACCCCATCTGTTGGAGTTCCACATACATCATCTCCAATATTCATGGAAGAATGAAGACAATGTA
192 TACCCCATCTATTGGAGTTTCACATACATCATCTTCAATATTCATGGATGAATGAAGGCAACGTA
* * * * * *
22681032 TTAAATAGATAGGGTATGGAACAGATAA-AGTATTCTCCATCCTA-TCTCTAAATTTTTGTAAAT
257 TTATATAGGTAGGGTATGGGA-AG-TAAGAGTATT-TCCATCCCATTCTC-AATTTTTTATAAAT
* *
22681095 GACT-AGGG
318 GGCTGAAGG
* * * * * *
22681103 TTGGTAAGGAAGAATGCAACAAATGGTTGAACTTCTTTATGAAAATTTTTTAGTTACTATAATAC
1 -TAGTTAGGAAGAATGCAACAAATGGCTGAACTTCTTCATGAAAATTTTTTAGTTACTACAACA-
* *
22681168 G-TAAAACAATTTAAAATCAATATTTCAATTAATTTTCACCCTATTTTATTTAATTGATCATGGG
64 GATAAAACAATTTAAAATCAATATTTCAATTAATTTTCACCCTATTTTGTCTAATTGATCATGGG
* *
22681232 -CTTTGGACCGACATATTAATA-TGGGATTGGGATGGCCTAACTTAATTAGGTATATATCCACAT
129 TC-TTGGACCGACATATTAATATTAGGATTGGGATGGCCTAACTTAATTAGGTATATATCCACGT
* * * *
22681295 ACCCCATCTATTAGAGTTTCACAAACATCATCTTTAATATTCATGGATAAATGAAGGCAACGTAT
193 ACCCCATCTATTGGAGTTTCACATACATCATCTTCAATATTCATGGATGAATGAAGGCAACGTAT
* * * * * * *
22681360 TAAATGGGTAAGATAGGGGATAGTAAGAGCATTTCGCATCCCA-TCACAAGTTTTTTATAAATGG
258 TATATAGGTAGGGTATGGGA-AGTAAGAGTATTTC-CATCCCATTCTCAA-TTTTTTATAAATGG
**
22681424 CTGGGGG
320 CTGAAGG
* * * * * *
22681431 TAGTTAGGAAGAATGGAACAAATGGTTAAACATT-TTCAAGGAAATTTTTCAGTTACTACAACTA
1 TAGTTAGGAAGAATGCAACAAATGGCTGAAC-TTCTTCATGAAAATTTTTTAGTTACTACAAC-A
* * *
22681495 -ATAAAATAATTTAAAATCAATATTTCAATTAATTATCACCCTATTTTGTCTAATTGAACAT-GG
64 GATAAAACAATTTAAAATCAATATTTCAATTAATTTTCACCCTATTTTGTCTAATTGATCATGGG
* * *
22681558 TCTTGGACCGACATATTAATATTAGGATTGGAATGGTCC-AACTTAATTAGGAATATATCCATGT
129 TCTTGGACCGACATATTAATATTAGGATTGGGATGG-CCTAACTTAATTAGGTATATATCCACGT
* * * *
22681622 ACCCTC-TCTATTAGAGTTCCACATACATCATTTTCAATATTCATGGATGAATGATAGGAAACGT
193 ACCC-CATCTATTGGAGTTTCACATACATCATCTTCAATATTCATGGATGAATGA-AGGCAACGT
* *
22681686 ATTATA-CGGATAGGGTATGGGACAGGT-AGAGTATTCTCCATCCTATT-TCCAATTTTTTATAA
256 ATTATATAGG-TAGGGTATGGGA-A-GTAAGAGTATT-TCCATCCCATTCT-CAATTTTTTATAA
*
22681748 ATGGCTAAAGG
316 ATGGCTGAAGG
* * * * * * *
22681759 TATTTAGGAAGAATGCAACAAATGGCTGAACTTCTTCATGAAATTTTTTTAATTATTATAGCAAA
1 TAGTTAGGAAGAATGCAACAAATGGCTGAACTTCTTCATGAAAATTTTTTAGTTACTACAACAGA
*
22681824 TAAAACAATTT-AAATCAATATTTCAATTAAGTTTCACCCTATTTTGTCTAACTT-ATCATGGGT
66 TAAAACAATTTAAAATCAATATTTCAATTAATTTTCACCCTATTTTGTCTAA-TTGATCATGGGT
** * * * * * *
22681887 -TGTGGATTGACATATTAATATTATGATTGAGATGGCCTAACTTAATAAAGTATAAATTCACGTA
130 CT-TGGACCGACATATTAATATTAGGATTGGGATGGCCTAACTTAATTAGGTATATATCCACGTA
* * * * * * *
22681951 CCCTATC-ATTGAAGTATCACATACATCATCTTCAATATTCATTGATGAATAAAGGCAAAGAATT
194 CCCCATCTATTGGAGTTTCACATACATCATCTTCAATATTCATGGATGAATGAAGGCAACGTATT
* * ** * * * *
22682015 AAAT-GAGTAAGGTATGGGGTGGACAAAATATTAT-CATTCCATT-T-ATAGTTTTTTATAAATG
259 ATATAG-GTAGGGTATGGGAAGTA-AGAGTATT-TCCATCCCATTCTCA-A-TTTTTTATAAATG
22682076 GCTGAAGG
319 GCTGAAGG
* * * * **
22682084 TAGTTAGAAAGAGTGCAACAAATGACTGAACTTCTTCATGAAAATTTTTTAGTTATTACAGTAGA
1 TAGTTAGGAAGAATGCAACAAATGGCTGAACTTCTTCATGAAAATTTTTTAGTTACTACAACAGA
* * *
22682149 TAAAACAATTTAAAATCAATATTTCACTTAATTTTCACCTTATTTTGTCTAACTGATCAT-GGTC
66 TAAAACAATTTAAAATCAATATTTCAATTAATTTTCACCCTATTTTGTCTAATTGATCATGGGTC
* * * * * *
22682213 ATAGATCGACATATTAATATT-GGATTGAGATGGCCTAACTTAATTAAGTATATATCC-CTGTAA
131 TTGGACCGACATATTAATATTAGGATTGGGATGGCCTAACTTAATTAGGTATATATCCAC-GTAC
* * *
22682276 CCTATCTATTGGAGTTTCACATACATCATCTTCAATATACATGGATGAATGAAGGCAACATATTA
195 CCCATCTATTGGAGTTTCACATACATCATCTTCAATATTCATGGATGAATGAAGGCAACGTATTA
* * * * *
22682341 TATAGGTAGGGTATGGGACGGGT-AGAGTATTCCCCATCCCATCCCCAATTTTTTATAAATGGTT
260 TATAGGTAGGGTATGGGA--AGTAAGAGTATT-TCCATCCCATTCTCAATTTTTTATAAATGGCT
*
22682405 GATGG
322 GAAGG
* * * * * *
22682410 TAGATAGAAAGAATGAAACAAATGGTTGAACTTTTTCATGAAAATTTTTTAGTTACTACAATAGA
1 TAGTTAGGAAGAATGCAACAAATGGCTGAACTTCTTCATGAAAATTTTTTAGTTACTACAACAGA
* ** * * *
22682475 TAAAATAATTTAAAATCAATATTTCTTTTAATTTTCACCTTA-TTTGTCTAATTGATTATAGGTC
66 TAAAACAATTTAAAATCAATATTTCAATTAATTTTCACCCTATTTTGTCTAATTGATCATGGGTC
* * * *
22682539 TTGGACCGACATATTAATATTAAGATTGGAATGGCCTAACTTAATTAGGTATATATCGATGTACC
131 TTGGACCGACATATTAATATTAGGATTGGGATGGCCTAACTTAATTAGGTATATATCCACGTACC
* * * *** * *
22682604 CCATTTGTTGGAG-TTCTACATACGTCATCTTTGGTATTCATGGATGAATAAAGGCAACATATTA
196 CCATCTATTGGAGTTTC-ACATACATCATCTTCAATATTCATGGATGAATGAAGGCAACGTATTA
* * **
22682668 TATAGGTAGGGTATAGGGCAGGT-AGAGTATTTTCTATCATATTCTCAATTTTTTTATAAATGGC
260 TATAGGTAGGGTAT-GGG-AAGTAAGAGTA-TTTCCATCCCATTCTCAA-TTTTTTATAAATGGC
* *
22682732 TGGAGA
321 TGAAGG
* * * * * *
22682738 TAGTTAGGAAAAATGAAACAAATGGTTGAACTTTTTCATGAAAATTTTTTAGTTATTATAACAGA
1 TAGTTAGGAAGAATGCAACAAATGGCTGAACTTCTTCATGAAAATTTTTTAGTTACTACAACAGA
* * * *
22682803 TAAAACAATTTAAAATCAATATTTCAATTAA-TTTCACCCTATTTTATCCAATTGCTTATGGGTC
66 TAAAACAATTTAAAATCAATATTTCAATTAATTTTCACCCTATTTTGTCTAATTGATCATGGGTC
* * * * * ** * * * *
22682867 TTAGACCAACTTATTAACATTGGGATTGAAATGACCTAGCTTAATTAGGCATATATCCACATACC
131 TTGGACCGACATATTAATATTAGGATTGGGATGGCCTAACTTAATTAGGTATATATCCACGTACC
* * * * * * * *
22682932 CAATCTGTTGAAGTTTCACATACATCATATTCAATATTCATAGATAAATGAAATG-AACATATTA
196 CCATCTATTGGAGTTTCACATACATCATCTTCAATATTCATGGATGAATG-AAGGCAACGTATTA
* * * * ** *
22682996 TATTGATAGGGTATGGGACGGATAGAGTATTCTGTATCCCATTCTCAGTTTTTTATAAATGGCT-
260 TATAGGTAGGGTATGGGAAGTA-AGAGTATT-TCCATCCCATTCTCAATTTTTTATAAATGGCTG
22683060 AAGGG
323 AA-GG
* * * *
22683065 TAGTTAGGAAGAAAT-CAACAAATGACTGAACTTCTTCGTGAAAAATTTTTAGTTACTACAACAA
1 TAGTTAGGAAG-AATGCAACAAATGGCTGAACTTCTTCATGAAAATTTTTTAGTTACTACAACAG
* * * * * * *
22683129 ACAAAATAATTTAAAATCAATATTTCATTTAATTTTCACCTTATTTTGTTTGATTGATCATAGGT
65 ATAAAACAATTTAAAATCAATATTTCAATTAATTTTCACCCTATTTTGTCTAATTGATCATGGGT
* * *
22683194 CTTGGACCAATATATTAATATTAGGATTGGGATGGCCAAACTTAATTAGGTATATATCCACGTAC
130 CTTGGACCGACATATTAATATTAGGATTGGGATGGCCTAACTTAATTAGGTATATATCCACGTAC
** * * * * * * *
22683259 CATATTTGTTGGAGTTCCACATATATCACCTTTAATATTCATAGATGAATGAAG
195 CCCATCTATTGGAGTTTCACATACATCATCTTCAATATTCATGGATGAATGAAG
22683313 ACAATATATT
Statistics
Matches: 1833, Mismatches: 312, Indels: 129
0.81 0.14 0.06
Matches are distributed among these distances:
323 2 0.00
324 43 0.02
325 201 0.11
326 250 0.14
327 656 0.36
328 664 0.36
329 17 0.01
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.36
Consensus pattern (326 bp):
TAGTTAGGAAGAATGCAACAAATGGCTGAACTTCTTCATGAAAATTTTTTAGTTACTACAACAGA
TAAAACAATTTAAAATCAATATTTCAATTAATTTTCACCCTATTTTGTCTAATTGATCATGGGTC
TTGGACCGACATATTAATATTAGGATTGGGATGGCCTAACTTAATTAGGTATATATCCACGTACC
CCATCTATTGGAGTTTCACATACATCATCTTCAATATTCATGGATGAATGAAGGCAACGTATTAT
ATAGGTAGGGTATGGGAAGTAAGAGTATTTCCATCCCATTCTCAATTTTTTATAAATGGCTGAAG
G
Found at i:22683633 original size:19 final size:20
Alignment explanation
Indices: 22683597--22683639 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
22683587 AATTAATCCA
*
22683597 AAAT-AAAATTTATATTATT
1 AAATAAAAATTAATATTATT
*
22683616 GAATAAAAATTAAT-TTATT
1 AAATAAAAATTAATATTATT
22683635 AAATA
1 AAATA
22683640 TATAAATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
AAATAAAAATTAATATTATT
Found at i:22686104 original size:22 final size:22
Alignment explanation
Indices: 22686079--22686124 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
22686069 GTATAAGAGT
22686079 AAATGCAAATGATTAAA-ATTTA
1 AAATGCAAAT-ATTAAATATTTA
**
22686101 AAATTTAAATATTAAATATTTA
1 AAATGCAAATATTAAATATTTA
22686123 AA
1 AA
22686125 TTTAAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (22 bp):
AAATGCAAATATTAAATATTTA
Found at i:22686108 original size:14 final size:14
Alignment explanation
Indices: 22686094--22686136 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
22686084 CAAATGATTA
22686094 AAATTTAAA-ATTT
1 AAATTTAAATATTT
22686107 AAATATTAAATATTT
1 AAAT-TTAAATATTT
*
22686122 AAATTTAAATTTTT
1 AAATTTAAATATTT
22686136 A
1 A
22686137 TTGTCTTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 4 0.15
14 15 0.56
15 8 0.30
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
AAATTTAAATATTT
Found at i:22686114 original size:21 final size:22
Alignment explanation
Indices: 22686085--22686131 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
22686075 GAGTAAATGC
22686085 AAATGATTAAA-ATTTAAAATTT
1 AAATGATTAAATATTT-AAATTT
22686107 AAAT-ATTAAATATTTAAATTT
1 AAATGATTAAATATTTAAATTT
22686128 AAAT
1 AAAT
22686132 TTTTATTGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AAATGATTAAATATTTAAATTT
Found at i:22689317 original size:21 final size:22
Alignment explanation
Indices: 22689299--22689346 Score: 62
Period size: 25 Copynumber: 2.1 Consensus size: 22
22689289 AGAAATATGT
22689299 AATA-AAAAATATAAAATATAA
1 AATACAAAAATATAAAATATAA
22689320 AATACAAAAATAATACAAAATATAA
1 AATACAAAAAT-AT--AAAATATAA
22689345 AA
1 AA
22689347 AAATACAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 6 0.26
23 2 0.09
25 11 0.48
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (22 bp):
AATACAAAAATATAAAATATAA
Found at i:22689351 original size:17 final size:17
Alignment explanation
Indices: 22689311--22689356 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
22689301 TAAAAAATAT
*
22689311 AAAATATAAAATACAAA
1 AAAATACAAAATACAAA
*
22689328 AATAATACAAAATATAAA
1 AA-AATACAAAATACAAA
22689346 AAAATACAAAA
1 AAAATACAAAA
22689357 AAAAACAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (17 bp):
AAAATACAAAATACAAA
Found at i:22696188 original size:15 final size:15
Alignment explanation
Indices: 22696165--22696204 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
22696155 TCCTTTGTTT
* *
22696165 TTTTTTTTTTTTTAA
1 TTTTATTTTTGTTAA
22696180 TTTTATTTTTGTTAA
1 TTTTATTTTTGTTAA
*
22696195 ATTTATTTTT
1 TTTTATTTTT
22696205 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (15 bp):
TTTTATTTTTGTTAA
Found at i:22696210 original size:22 final size:21
Alignment explanation
Indices: 22696175--22696226 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
22696165 TTTTTTTTTT
*
22696175 TTTAATTTTATTTTTGTTAAA
1 TTTAATTTTATTTTTATTAAA
*
22696196 TTTATTTTTATTTTTTATTAAA
1 TTTAATTTTA-TTTTTATTAAA
*
22696218 -TAAATTTTA
1 TTTAATTTTA
22696227 CAATAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTAATTTTATTTTTATTAAA
Found at i:22696447 original size:16 final size:18
Alignment explanation
Indices: 22696408--22696447 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 18
22696398 TATATATAAA
22696408 TATATATTTTATTATTTAT
1 TATAT-TTTTATTATTTAT
22696427 T-TATTTTTA-TA-TTAT
1 TATATTTTTATTATTTAT
22696442 TATATT
1 TATATT
22696448 ATTAAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.25
16 6 0.30
17 5 0.25
18 3 0.15
19 1 0.05
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TATATTTTTATTATTTAT
Found at i:22696562 original size:17 final size:18
Alignment explanation
Indices: 22696526--22696563 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
22696516 TTCTTTTTTT
*
22696526 AATTTTATTTATTAAATA
1 AATTTTATTTAATAAATA
*
22696544 AATTTTA-TTAATCAATA
1 AATTTTATTTAATAAATA
22696561 AAT
1 AAT
22696564 AAAAAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTTTATTTAATAAATA
Found at i:22698421 original size:2 final size:2
Alignment explanation
Indices: 22698410--22698441 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
22698400 ATTTTTATTA
22698410 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22698442 CACACATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22702425 original size:40 final size:40
Alignment explanation
Indices: 22702369--22702448 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
22702359 TCTTATCCAA
22702369 GGCAAATTGGAAGAAGATCGAGAAATGAGAGATGTAAGCT
1 GGCAAATTGGAAGAAGATCGAGAAATGAGAGATGTAAGCT
*
22702409 GGCAAATTGGAGGAAGATCGAGAAATGAGAGATGTAAGCT
1 GGCAAATTGGAAGAAGATCGAGAAATGAGAGATGTAAGCT
22702449 TTCTCTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.41, C:0.07, G:0.34, T:0.17
Consensus pattern (40 bp):
GGCAAATTGGAAGAAGATCGAGAAATGAGAGATGTAAGCT
Found at i:22709589 original size:2 final size:2
Alignment explanation
Indices: 22709582--22709608 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22709572 TTCCTCACAA
22709582 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
22709609 AATGTAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:22713209 original size:12 final size:12
Alignment explanation
Indices: 22713192--22713216 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22713182 AATCAGATAA
22713192 GGTAAATAGTGT
1 GGTAAATAGTGT
22713204 GGTAAATAGTGT
1 GGTAAATAGTGT
22713216 G
1 G
22713217 TATACTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (12 bp):
GGTAAATAGTGT
Found at i:22726904 original size:44 final size:44
Alignment explanation
Indices: 22726854--22726945 Score: 148
Period size: 44 Copynumber: 2.1 Consensus size: 44
22726844 AATTTTACAA
* * *
22726854 TATTTAGGTTAAACTCGAAGTTACAGTACATGTATGAATAAGTT
1 TATTTAGGTAAAACTCGAAGTTACAGTACAAGTACGAATAAGTT
*
22726898 TATTTAGGTAAAACTTGAAGTTACAGTACAAGTACGAATAAGTT
1 TATTTAGGTAAAACTCGAAGTTACAGTACAAGTACGAATAAGTT
22726942 TATT
1 TATT
22726946 CATAATTATG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (44 bp):
TATTTAGGTAAAACTCGAAGTTACAGTACAAGTACGAATAAGTT
Found at i:22727651 original size:30 final size:29
Alignment explanation
Indices: 22727617--22727702 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 29
22727607 TATTAAAAAC
22727617 TTATTTAGGTATAAATTAAATATTAAAGGT
1 TTATTTAGGTATAAATTAAA-ATTAAAGGT
* * *
22727647 TTATTT-GCATACAAATTAAAAGTTAAATGT
1 TTATTTAG-GTATAAATTAAAA-TTAAAGGT
* *
22727677 TTATTTATGTGTAAATTAAAAATTAA
1 TTATTTAGGTATAAATT-AAAATTAA
22727703 GAGCTTATTT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
29 2 0.04
30 39 0.87
31 4 0.09
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.43
Consensus pattern (29 bp):
TTATTTAGGTATAAATTAAAATTAAAGGT
Found at i:22731391 original size:30 final size:30
Alignment explanation
Indices: 22731335--22731392 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
22731325 ATATTAATAT
*
22731335 AAAAAAAAGGAAAAATGATGTGTGTTTTTAC
1 AAAAAAAAGAAAAAAT-ATGTGTGTTTTTAC
*
22731366 AAAAAAAAGAAAAGAAT-TGTTTGTTTT
1 AAAAAAAAGAAAA-AATATGTGTGTTTT
22731393 ACTTTTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 9 0.38
31 12 0.50
32 3 0.12
ACGTcount: A:0.50, C:0.02, G:0.17, T:0.31
Consensus pattern (30 bp):
AAAAAAAAGAAAAAATATGTGTGTTTTTAC
Found at i:22731530 original size:16 final size:15
Alignment explanation
Indices: 22731485--22731536 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 15
22731475 AAAAAAATCT
22731485 ATTTGAATCAAATTTG
1 ATTTGAATC-AATTTG
22731501 -TTTAGAAT-AATTTG
1 ATTT-GAATCAATTTG
22731515 ATTTGAATCGAATTTG
1 ATTTGAATC-AATTTG
22731531 ATTTGA
1 ATTTGA
22731537 TTTTTTACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
14 10 0.31
15 6 0.19
16 16 0.50
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (15 bp):
ATTTGAATCAATTTG
Found at i:22731770 original size:20 final size:19
Alignment explanation
Indices: 22731730--22731771 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
22731720 TTTTTATTTT
*
22731730 TAAAAATTTAAAATATGTA
1 TAAAAATTTAAAATATATA
22731749 TAAAAATTAATAAAA-ATATA
1 TAAAAATT--TAAAATATATA
22731769 TAA
1 TAA
22731772 TTTATTTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
20 7 0.35
21 5 0.25
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAAAATTTAAAATATATA
Found at i:22735740 original size:25 final size:25
Alignment explanation
Indices: 22735705--22735758 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
22735695 TAGTATTAAG
*
22735705 TTTG-AGCTTG-AGTTTGATTTGAAA
1 TTTGAAGCTTGAAATTTGATTTG-AA
*
22735729 TTTGAAGCTTGAAATTTGGTTTGAA
1 TTTGAAGCTTGAAATTTGATTTGAA
22735754 TTTGA
1 TTTGA
22735759 TTTAATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 4 0.15
25 13 0.50
26 9 0.35
ACGTcount: A:0.26, C:0.04, G:0.24, T:0.46
Consensus pattern (25 bp):
TTTGAAGCTTGAAATTTGATTTGAA
Found at i:22742494 original size:11 final size:11
Alignment explanation
Indices: 22742478--22742584 Score: 58
Period size: 11 Copynumber: 9.7 Consensus size: 11
22742468 AGCAATGAAA
22742478 TTATTAATAAT
1 TTATTAATAAT
* *
22742489 TTATTATTAAA
1 TTATTAATAAT
*
22742500 TTACTAATAAT
1 TTATTAATAAT
* *
22742511 TTATTATTAAA
1 TTATTAATAAT
*
22742522 TTA-TAATTGAT
1 TTATTAA-TAAT
* *
22742533 TTACTATTAAT
1 TTATTAATAAT
* *
22742544 TTATCAATGAT
1 TTATTAATAAT
22742555 TTAATATAA-AA-
1 TT-AT-TAATAAT
*
22742566 TTATTAATAGT
1 TTATTAATAAT
*
22742577 TAATTAAT
1 TTATTAAT
22742585 TTACTATAAA
Statistics
Matches: 69, Mismatches: 21, Indels: 12
0.68 0.21 0.12
Matches are distributed among these distances:
9 3 0.04
10 5 0.07
11 54 0.78
12 5 0.07
13 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (11 bp):
TTATTAATAAT
Found at i:22742500 original size:22 final size:22
Alignment explanation
Indices: 22742475--22742574 Score: 112
Period size: 22 Copynumber: 4.5 Consensus size: 22
22742465 AGTAGCAATG
22742475 AAATTATTAATAATTTATTATT
1 AAATTATTAATAATTTATTATT
*
22742497 AAATTACTAATAATTTATTATT
1 AAATTATTAATAATTTATTATT
* *
22742519 AAATTA-TAATTGATTTACTATT
1 AAATTATTAA-TAATTTATTATT
* * * * *
22742541 AATTTATCAATGATTTAATATA
1 AAATTATTAATAATTTATTATT
22742563 AAATTATTAATA
1 AAATTATTAATA
22742575 GTTAATTAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
21 3 0.05
22 61 0.92
23 2 0.03
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (22 bp):
AAATTATTAATAATTTATTATT
Found at i:22742515 original size:33 final size:33
Alignment explanation
Indices: 22742478--22742611 Score: 98
Period size: 33 Copynumber: 4.2 Consensus size: 33
22742468 AGCAATGAAA
22742478 TTATTAATAATTTATTATTAAATTACTAATAAT
1 TTATTAATAATTTATTATTAAATTACTAATAAT
* * * * * *
22742511 TTATTATTAAATTATAATTGATTTACTATTAAT
1 TTATTAATAATTTATTATTAAATTACTAATAAT
* * * * * *
22742544 TTATCAATGATTTAATATAAAATTATTAAT-AG
1 TTATTAATAATTTATTATTAAATTACTAATAAT
* *
22742576 TTA--ATTAATTTACTA-TAAATTA-TCAATAAT
1 TTATTAATAATTTATTATTAAATTACT-AATAAT
22742606 TTATTA
1 TTATTA
22742612 CTATATTATT
Statistics
Matches: 74, Mismatches: 23, Indels: 9
0.70 0.22 0.08
Matches are distributed among these distances:
28 1 0.01
29 9 0.12
30 13 0.18
32 5 0.07
33 46 0.62
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (33 bp):
TTATTAATAATTTATTATTAAATTACTAATAAT
Found at i:22742557 original size:66 final size:66
Alignment explanation
Indices: 22742443--22742574 Score: 149
Period size: 66 Copynumber: 2.0 Consensus size: 66
22742433 ACTATTGACG
* * * *
22742443 ATTTATTATTAAATTATGACTGAGTAGCAATGAAATTATTAATAATTTATTATTAAATTACTAAT
1 ATTTATTATTAAATTATAACTGAGTAGCAATGAAATTATCAATAATTTAATATAAAATTACTAAT
22742508 A
66 A
* * * * * * *
22742509 ATTTATTATTAAATTATAATTGATTTA-CTATTAATTTATCAATGATTTAATATAAAATTATTAA
1 ATTTATTATTAAATTATAACTGA-GTAGCAATGAAATTATCAATAATTTAATATAAAATTACTAA
22742573 TA
65 TA
22742575 GTTAATTAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
66 52 0.96
67 2 0.04
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (66 bp):
ATTTATTATTAAATTATAACTGAGTAGCAATGAAATTATCAATAATTTAATATAAAATTACTAAT
A
Found at i:22742611 original size:29 final size:30
Alignment explanation
Indices: 22742553--22742611 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
22742543 TTTATCAATG
* *
22742553 ATTTAATATAAAATTATTAATAGTTAATTA
1 ATTTAATATAAAATTATCAATAATTAATTA
* *
22742583 ATTTACTAT-AAATTATCAATAATTTATTA
1 ATTTAATATAAAATTATCAATAATTAATTA
22742612 CTATATTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.47
Consensus pattern (30 bp):
ATTTAATATAAAATTATCAATAATTAATTA
Found at i:22742629 original size:22 final size:21
Alignment explanation
Indices: 22742604--22742688 Score: 73
Period size: 22 Copynumber: 3.9 Consensus size: 21
22742594 ATTATCAATA
*
22742604 ATTTATTACTATATTATTATAT
1 ATTTACTACTATATTATTAT-T
* *
22742626 ATTTACCACTATGTTATTATTT
1 ATTTACTACTATATTATTA-TT
22742648 ATTTACTACT-TAATTATTGATT
1 ATTTACTACTAT-ATTATT-ATT
* * *
22742670 ATTTATTACAAAATTATTA
1 ATTTACTACTATATTATTA
22742689 CAAATTAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
21 2 0.04
22 47 0.92
23 2 0.04
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.54
Consensus pattern (21 bp):
ATTTACTACTATATTATTATT
Found at i:22742774 original size:43 final size:44
Alignment explanation
Indices: 22742725--22742868 Score: 150
Period size: 43 Copynumber: 3.3 Consensus size: 44
22742715 CATCACTATC
* *
22742725 AAGTTATTATTGATTTA-TATTTAATTATCAATAATTTATTATT
1 AAGTTATTATTGATTTATTATTAAATTATCAATAATTTATTACT
* * *
22742768 AAGTTATCATTGATTAATTATTAAATTATCAATTATTTATTACT
1 AAGTTATTATTGATTTATTATTAAATTATCAATAATTTATTACT
* * * * *
22742812 AAATTA-TATTGATTTACTT-TTAAATTTTCAATGATTAACTACT
1 AAGTTATTATTGATTTA-TTATTAAATTATCAATAATTTATTACT
* *
22742855 AAATTATCATTGAT
1 AAGTTATTATTGAT
22742869 ATACTACTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
43 49 0.58
44 36 0.42
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.51
Consensus pattern (44 bp):
AAGTTATTATTGATTTATTATTAAATTATCAATAATTTATTACT
Done.