Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 129 of 131
Found at i:23676767 original size:231 final size:230
Alignment explanation
Indices: 23676306--23677002 Score: 638
Period size: 231 Copynumber: 3.0 Consensus size: 230
23676296 CACTATCCAC
* * * *
23676306 TCATTTGATCTCGACTCATGTCAGATCATCCTTTGACCTGTACATTAGTCTAGTCATTTATTTTT
1 TCATTTGATCTCGACTCATGTCAGATCATCCTCTGACCCGCACATTAGTCCAGTCATTTATTTTT
* * * * *
23676371 GACTTTGACTCAGTCCTGGTTGTTTCATTTTAACTTGCAACATTATCCCATTTATTTGATCTCGA
66 GACATTAACTCAGTCCTGGTCGTTTCATTTTAACTTGCAACATCATCCCAGTTATTTGATCTCGA
* * * *
23676436 CTCATGTCAGATCATTTTTAGACTTGTGACATCAGTCCGATCATATATTTTTTATCTTGACTCCA
131 CTCATGTCAGATCATCTTCAGACTTGCGACATCAGTCCGATCATATATTTTTGATCTTGACTCCA
* *
23676501 TCTTGGTCACCTTTTTACTTGTGGCATCATCCTAG
196 TCTTGGTCACCTTTTGACTTGCGGCATCATCCTAG
* * *
23676536 TCATTTGATCTCGACTCATGTCATATCATTCTCTGACCCGCA-ATATCAGTCCGGTCATTTATTT
1 TCATTTGATCTCGACTCATGTCAGATCATCCTCTGACCCGCACAT-T-AGTCCAGTCATTTATTT
** * * *
23676600 TTGACATTAACTTGGTCCTGGTCGTTTTATTTTAACTTGCGACATCATCCCAGTTATTTGATCTT
64 TTGACATTAACTCAGTCCTGGTCGTTTCATTTTAACTTGCAACATCATCCCAGTTATTTGATCTC
* * * * *
23676665 GACTCATGTTAGATCATCTTCAGACTTGCGATATTAGTCTTG-TCATTTATTTTTGA-CTTTGAC
129 GACTCATGTCAGATCATCTTCAGACTTGCGACATCAGTC-CGATCATATATTTTTGATC-TTGAC
* * *
23676728 TCGATCTTGGTCA-CTTTCTGACTTGCGGTATCGTCCTAG
192 TCCATCTTGGTCACCTTT-TGACTTGCGGCATCATCCTAG
** * * * * *
23676767 TTGTTTGATCTTGACTCATGTCAGATCATCTTTTGA-CC-TACGATATAGTTCAGTCATTTATTT
1 TCATTTGATCTCGACTCATGTCAGATCATCCTCTGACCCGCAC-AT-TAGTCCAGTCATTTA-TT
* ** * * * * *** * * *
23676830 TTTGACCTCGACT-TGATTCTGGTCATTTCATTTTGACTTGCGGTATTATCCCA-TTCATCTAAT
63 TTTGACATTAACTCAG-TCCTGGTCGTTTCATTTTAACTTGCAACATCATCCCAGTT-ATTTGAT
* * * * * * * **
23676893 CTCGACTCATATCAGATCATTTTTAGACTCGTGACATCAGT-CAATCATTTATTTACGATCTTGA
126 CTCGACTCATGTCAGATCATCTTCAGACTTGCGACATCAGTCCGATCATATATTTTTGATCTTGA
** * * ** *
23676957 CTTGATCTTGGTCACCCTTAGGTTTGCGGCATCATCCCAG
191 CTCCATCTTGGTCACCTTTTGACTTGCGGCATCATCCTAG
23676997 TCATTT
1 TCATTT
23677003 ATTTGATCTC
Statistics
Matches: 377, Mismatches: 77, Indels: 26
0.79 0.16 0.05
Matches are distributed among these distances:
229 3 0.01
230 108 0.29
231 265 0.70
232 1 0.00
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (230 bp):
TCATTTGATCTCGACTCATGTCAGATCATCCTCTGACCCGCACATTAGTCCAGTCATTTATTTTT
GACATTAACTCAGTCCTGGTCGTTTCATTTTAACTTGCAACATCATCCCAGTTATTTGATCTCGA
CTCATGTCAGATCATCTTCAGACTTGCGACATCAGTCCGATCATATATTTTTGATCTTGACTCCA
TCTTGGTCACCTTTTGACTTGCGGCATCATCCTAG
Found at i:23676796 original size:114 final size:112
Alignment explanation
Indices: 23676308--23676971 Score: 378
Period size: 117 Copynumber: 5.8 Consensus size: 112
23676298 CTATCCACTC
* * * * * *
23676308 ATTTGATCTCGACTCATGTCAGATCATCCTT-TGACCTG-TACATTAGTCTAGTCATTTATTTTT
1 ATTTGATCTCGACTCATGTCAGATCAT-CTTCAGACTTGCGATATCAGTC-CGTCATTTATTTTT
* ** * * *
23676371 GACTTTGACTC-AGTCCTGGTTGTTTCA-TTTTAACTTGCAACATTATCCCATTT
64 GACTTTGACTCGA-T-C---TTG-GTCACTTTTAACTTGCGGCATCATCCTAGTT
* * * * * *
23676424 ATTTGATCTCGACTCATGTCAGATCATTTTTAGACTTGTGACATCAGTCCGATCATATATTTTTT
1 ATTTGATCTCGACTCATGTCAGATCATCTTCAGACTTGCGATATCAGTCCG-TCATTTATTTTTG
* * * *
23676489 A-TCTTGACTCCATCTTGGTCACCTTTTTACTTGTGGCATCATCCTAGTC
65 ACT-TTGACTCGATCTTGGTCA-CTTTTAACTTGCGGCATCATCCTAGTT
* * ** *
23676538 ATTTGATCTCGACTCATGTCATATCAT-TCTCTGACCCGCAATATCAGTCCGGTCATTTATTTTT
1 ATTTGATCTCGACTCATGTCAGATCATCT-TCAGACTTGCGATATCAGTCC-GTCATTTATTTTT
* * * * * * *
23676602 GACATTAACTTGGTCCTGGTCGTTTTA-TTTTAACTTGCGACATCATCCCAGTT
64 GACTTTGACTCGATCTTGGTC-----ACTTTTAACTTGCGGCATCATCCTAGTT
* * * *
23676655 ATTTGATCTTGACTCATGTTAGATCATCTTCAGACTTGCGATATTAGTCTTGTCATTTATTTTTG
1 ATTTGATCTCGACTCATGTCAGATCATCTTCAGACTTGCGATATCAGTC-CGTCATTTATTTTTG
* * *
23676720 ACTTTGACTCGATCTTGGTCACTTTCTGACTTGCGGTATCGTCCTAGTT
65 ACTTTGACTCGATCTTGGTCACTTT-TAACTTGCGGCATCATCCTAGTT
* * ** * * *
23676769 GTTTGATCTTGACTCATGTCAGATCATCTTTTGACCTACGATAT-AGTTCAGTCATTTATTTTTT
1 ATTTGATCTCGACTCATGTCAGATCATCTTCAGACTTGCGATATCAG-TCCGTCATTTA-TTTTT
* * * * * * *
23676833 GACCTCGACTTGAT-TCTGGTCATTTCATTTTGACTTGCGGTATTATCCCA-TT
64 GACTTTGACTCGATCT-TGGTCA---C-TTTTAACTTGCGGCATCATCCTAGTT
* * * * * * * * ** **
23676885 CATCTAATCTCGACTCATATCAGATCATTTTTAGACTCGTGACATCAGTCAATCATTTATTTACG
1 -ATTTGATCTCGACTCATGTCAGATCATCTTCAGACTTGCGATATCAGTCCGTCATTTATTTTTG
*
23676950 A-TCTTGACTTGATCTTGGTCAC
65 ACT-TTGACTCGATCTTGGTCAC
23676972 CCTTAGGTTT
Statistics
Matches: 431, Mismatches: 87, Indels: 63
0.74 0.15 0.11
Matches are distributed among these distances:
112 4 0.01
113 19 0.04
114 162 0.38
115 3 0.01
116 57 0.13
117 178 0.41
118 7 0.02
119 1 0.00
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (112 bp):
ATTTGATCTCGACTCATGTCAGATCATCTTCAGACTTGCGATATCAGTCCGTCATTTATTTTTGA
CTTTGACTCGATCTTGGTCACTTTTAACTTGCGGCATCATCCTAGTT
Found at i:23677290 original size:26 final size:26
Alignment explanation
Indices: 23677261--23677310 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
23677251 AGGCCTATTG
* * *
23677261 ATGTTTAAGCCCATTTGGGCCCATGA
1 ATGTTCAAGCCCAGTTAGGCCCATGA
*
23677287 ATGTTCAAGCTCAGTTAGGCCCAT
1 ATGTTCAAGCCCAGTTAGGCCCAT
23677311 TTGGATCTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
ATGTTCAAGCCCAGTTAGGCCCATGA
Found at i:23677350 original size:3 final size:3
Alignment explanation
Indices: 23677342--23677427 Score: 68
Period size: 3 Copynumber: 27.7 Consensus size: 3
23677332 TAGCTTGTTT
* * *
23677342 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA CTA CTA CTT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* *
23677387 TAA TCA CTT- TTA TTTA TTTA TTTA TTA TTA TTA TTA TTA TT
1 TTA TTA -TTA TTA -TTA -TTA -TTA TTA TTA TTA TTA TTA TT
23677428 GTTTCAATTT
Statistics
Matches: 73, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
2 3 0.04
3 57 0.78
4 13 0.18
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:23683358 original size:20 final size:20
Alignment explanation
Indices: 23683322--23683359 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
23683312 AAATTAACAT
*
23683322 AATAAAAATATATTAAAATA
1 AATAAAAATATACTAAAATA
23683342 AATAAAAAT-TGACTAAAA
1 AATAAAAATAT-ACTAAAA
23683360 ATAATATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
AATAAAAATATACTAAAATA
Found at i:23689733 original size:25 final size:24
Alignment explanation
Indices: 23689705--23689752 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
23689695 AAGATTTATC
*
23689705 ATAACATTCCTTCTAAAATAATAAA
1 ATAACACTCCTTCT-AAATAATAAA
* *
23689730 ATAACACTCTTTGTAAATAATAA
1 ATAACACTCCTTCTAAATAATAA
23689753 TCATTATTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (24 bp):
ATAACACTCCTTCTAAATAATAAA
Found at i:23690455 original size:3 final size:3
Alignment explanation
Indices: 23690449--23690489 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
23690439 TTTTTTTTAA
**
23690449 ATT ATT ATT ATT ATT ATT ATT ATT CCT -TT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
23690490 TTTGAAGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
2 1 0.03
3 33 0.97
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:23692497 original size:146 final size:144
Alignment explanation
Indices: 23692137--23692509 Score: 403
Period size: 144 Copynumber: 2.6 Consensus size: 144
23692127 GCTAAAAAAT
* * * *
23692137 AAGTTTCATGAAATTCCAAGCTCGAAAAGGTCAAATTATGAAAATACCCTTATAAAGATATTTTG
1 AAGTTTCACGAAAATCTAAGCTCGAAAAGG-CAAATTATGAAAATACCCTTATAAAGGTATTTTG
* * *
23692202 ATAATTTTACACTTTT-GAGGTACTGCTATGATTTCAAATACACCAAAAAATCATGAAATATTAT
65 ATAATTTTACACTTTTCAAGGCACTACTATGATTTCAAATACACCAAAAAATCATGAAATATTAT
*
23692266 AAAATTAAGATTGAA
130 AAAATTAAGATTAAA
* * * * * * * *
23692281 AAGTTTCACGAAATTTTGAGCTTGAGAAGGTTAAATTATAAAAATACCCTTAAAAAGGTATTTTG
1 AAGTTTCACGAAAATCTAAGCTCGAAAAGG-CAAATTATGAAAATACCCTTATAAAGGTATTTTG
* * * * * * *
23692346 GTAATTTCATACTTTTCAAGGCACTACTGTGATTTTACATGCACC-AAAAATCATGAAAATATTA
65 ATAATTTTACACTTTTCAAGGCACTACTATGATTTCAAATACACCAAAAAATCATG-AAATATTA
*
23692410 TGAAATTAAGATTTAAA
129 TAAAATTAAGA-TTAAA
* * * *
23692427 AAGTTTTAC-AATAATCTAAGCTCGAAAAGGCGAAATTATGAAAATA-ACTCGATAAGGGTATTT
1 AAGTTTCACGAA-AATCTAAGCTCGAAAAGGC-AAATTATGAAAATACCCT-TATAAAGGTATTT
23692490 TGATAATTTTACACTTTTCA
63 TGATAATTTTACACTTTTCA
23692510 GGATGCAATA
Statistics
Matches: 186, Mismatches: 37, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
144 78 0.42
145 43 0.23
146 65 0.35
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (144 bp):
AAGTTTCACGAAAATCTAAGCTCGAAAAGGCAAATTATGAAAATACCCTTATAAAGGTATTTTGA
TAATTTTACACTTTTCAAGGCACTACTATGATTTCAAATACACCAAAAAATCATGAAATATTATA
AAATTAAGATTAAA
Found at i:23693187 original size:70 final size:70
Alignment explanation
Indices: 23693087--23693220 Score: 153
Period size: 70 Copynumber: 1.9 Consensus size: 70
23693077 GTAAATAGGG
* * * *
23693087 AAATAAAAATGACTGAGTTTAAACTATGAGTCAAAAAACAAAGATGGCTGGGACTAAGCCATAAA
1 AAATAAAAATGACTGAGATTAAACGATGAGTCAAAAAACAAAGATGACTGGGACTAAACCATAAA
23693152 ATGAA
66 ATGAA
* * ** * * *
23693157 AAATAAAAATGACTTG-GATTGAACGGTGAGTTGAAAGACAAATATGACTGGGAGTAAACCATAA
1 AAATAAAAATGAC-TGAGATTAAACGATGAGTCAAAAAACAAAGATGACTGGGACTAAACCATAA
23693221 GTCGAAAAAA
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
70 50 0.96
71 2 0.04
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (70 bp):
AAATAAAAATGACTGAGATTAAACGATGAGTCAAAAAACAAAGATGACTGGGACTAAACCATAAA
ATGAA
Found at i:23693281 original size:35 final size:35
Alignment explanation
Indices: 23693235--23693306 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
23693225 AAAAAAGAAA
*
23693235 ATGATCAAGATTGAA-CTACGAGTCAAGAAATAAAT
1 ATGATCAAGATTGAATC-ACAAGTCAAGAAATAAAT
23693270 ATGATCAAGATTGAATCACAAGTCAAGAAATAAAT
1 ATGATCAAGATTGAATCACAAGTCAAGAAATAAAT
23693305 AT
1 AT
23693307 AACTAGGACT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 34 0.97
36 1 0.03
ACGTcount: A:0.50, C:0.11, G:0.15, T:0.24
Consensus pattern (35 bp):
ATGATCAAGATTGAATCACAAGTCAAGAAATAAAT
Found at i:23693366 original size:35 final size:34
Alignment explanation
Indices: 23693232--23693408 Score: 83
Period size: 35 Copynumber: 5.1 Consensus size: 34
23693222 TCGAAAAAAG
* * * *
23693232 AAAATGATCAAGATTGAACTACGAGTCAAGAAATA
1 AAAATGACCAGGACTGAACTACGAATC-AGAAATA
* * * *
23693267 AATATGATCAAGATTGAA-TCAC-AAGTCAAGAAATA
1 AAAATGACCAGGACTGAACT-ACGAA-TC-AGAAATA
* * * *
23693302 AATATAACTAGGACT-AAGT-CGCAAGTCAGAAGATA
1 AAAATGACCAGGACTGAACTACG-AA-TCAGAA-ATA
23693337 AAAATGACCAGGACTGAACTACGAATCAGAAAATA
1 AAAATGACCAGGACTGAACTACGAATCAG-AAATA
** * * * *
23693372 ACGATGACTAGGATTGAACTGCGAGTCTAGAAATA
1 AAAATGACCAGGACTGAACTACGAATC-AGAAATA
23693407 AA
1 AA
23693409 TATAATTGAG
Statistics
Matches: 114, Mismatches: 18, Indels: 20
0.75 0.12 0.13
Matches are distributed among these distances:
33 1 0.01
34 8 0.07
35 94 0.82
36 9 0.08
37 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.20
Consensus pattern (34 bp):
AAAATGACCAGGACTGAACTACGAATCAGAAATA
Found at i:23693641 original size:35 final size:34
Alignment explanation
Indices: 23693464--23693641 Score: 94
Period size: 35 Copynumber: 5.1 Consensus size: 34
23693454 ATTGAACCGT
* * * *
23693464 AAGTCGAGAAATAAATATGACTTGAACTGAGTAAC
1 AAGTCGAGAAATAAATATGA-TCGGATTGAGTCAC
* * * *
23693499 AAGTC-AGGAAGTGAAA-ATGGCTAGGATTGAATCAC
1 AAGTCGA-GAAAT-AAATAT-GATCGGATTGAGTCAC
** * **
23693534 AAGTTAAGAAATAAATAT-ATCGAGATTGAGCCGT
1 AAGTCGAGAAATAAATATGATCG-GATTGAGTCAC
* * * * *
23693568 AAGTCGA-AGAATAAAGATGACCGGGATTAAATCGC
1 AAGTCGAGA-AATAAATATGATC-GGATTGAGTCAC
23693603 AAGTCGAGAAATAAATATGATTCGGATTGAGTCAC
1 AAGTCGAGAAATAAATATGA-TCGGATTGAGTCAC
23693638 AAGT
1 AAGT
23693642 TAAGAAGTGA
Statistics
Matches: 104, Mismatches: 28, Indels: 22
0.68 0.18 0.14
Matches are distributed among these distances:
33 3 0.03
34 24 0.23
35 69 0.66
36 8 0.08
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (34 bp):
AAGTCGAGAAATAAATATGATCGGATTGAGTCAC
Found at i:23693682 original size:70 final size:70
Alignment explanation
Indices: 23693464--23693690 Score: 212
Period size: 70 Copynumber: 3.3 Consensus size: 70
23693454 ATTGAACCGT
* * * * * * * *
23693464 AAGTCGAGAAATAAATATGACTT-GAACTGAGTAACAAGTCAGGAAGTGAAAATGGCTAGGATTG
1 AAGTTGAGAAATAAATATGA-TTCGGATTGAGTCACAAGTCAAGAAGTGAAAATGACCAGGATTA
23693528 AATCAC
65 AATCAC
* * ** *
23693534 AAGTTAAGAAATAAATAT-A-TCGAGATTGAGCCGTAAGTCGAAGAA-T-AAAGATGACCGGGAT
1 AAGTTGAGAAATAAATATGATTCG-GATTGAGTCACAAGTC-AAGAAGTGAAA-ATGACCAGGAT
*
23693595 TAAATCGC
63 TAAATCAC
* *
23693603 AAGTCGAGAAATAAATATGATTCGGATTGAGTCACAAGTTAAGAAGTGAAAATGACCAGGATTAA
1 AAGTTGAGAAATAAATATGATTCGGATTGAGTCACAAGTCAAGAAGTGAAAATGACCAGGATTAA
* *
23693668 ATTAT
66 ATCAC
*
23693673 GAGTTGAGAAATAAATAT
1 AAGTTGAGAAATAAATAT
23693691 AACCAAGATT
Statistics
Matches: 123, Mismatches: 26, Indels: 16
0.75 0.16 0.10
Matches are distributed among these distances:
67 1 0.01
68 4 0.03
69 47 0.38
70 65 0.53
71 6 0.05
ACGTcount: A:0.44, C:0.10, G:0.23, T:0.23
Consensus pattern (70 bp):
AAGTTGAGAAATAAATATGATTCGGATTGAGTCACAAGTCAAGAAGTGAAAATGACCAGGATTAA
ATCAC
Found at i:23694236 original size:35 final size:35
Alignment explanation
Indices: 23694166--23694317 Score: 114
Period size: 35 Copynumber: 4.3 Consensus size: 35
23694156 GGGCCGTAAA
* * * **
23694166 TCAAAAAATAAAAATGACAAGGATTGAA-CTACAAG
1 TCAAGAAATAAAAATGACCAGGACT-AAGCCGCAAG
* *
23694201 TCAAGAAATAAATATGACCACGACTAAGCCGCAAG
1 TCAAGAAATAAAAATGACCAGGACTAAGCCGCAAG
* * * * *
23694236 TCAA-AAGATAAAAATGATCGGGATTGAA-TCGCGAG
1 TCAAGAA-ATAAAAATGACCAGGACT-AAGCCGCAAG
*
23694271 TCGAAG-AATAAAAATGACTAGGACTAAGCCGCAAG
1 TC-AAGAAATAAAAATGACCAGGACTAAGCCGCAAG
*
23694306 TCAAAAAATAAA
1 TCAAGAAATAAA
23694318 GATAAGCAAA
Statistics
Matches: 89, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
34 8 0.09
35 76 0.85
36 5 0.06
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.16
Consensus pattern (35 bp):
TCAAGAAATAAAAATGACCAGGACTAAGCCGCAAG
Found at i:23694448 original size:70 final size:70
Alignment explanation
Indices: 23694166--23694502 Score: 257
Period size: 70 Copynumber: 4.8 Consensus size: 70
23694156 GGGCCGTAAA
* * * * *
23694166 TCAAAAAATAAAAATGACAAGGATTGAACTACAAGTC-AAGAAATAAATATGACCACGACTAAGC
1 TCAAAAAATAAAAATGACCAGGATTGAACCACAAGTCAAAG-AATAAAAATGACTAGGACTAAGC
23694230 CGCAAG
65 CGCAAG
* * * * * * *
23694236 TCAAAAGATAAAAATGATCGGGATTGAATCGCGAGTCGAAGAATAAAAATGACTAGGACTAAGCC
1 TCAAAAAATAAAAATGACCAGGATTGAACCACAAGTCAAAGAATAAAAATGACTAGGACTAAGCC
23694301 GCAAG
66 GCAAG
* * * ** *** * * * ** * *
23694306 TCAAAAAATAAAGATAAGCAAAATTGAACCGTGAGGCAAAAAATAAAGATGGTTGGGACTAAGCT
1 TCAAAAAATAAAAATGACCAGGATTGAACCACAAGTCAAAGAATAAAAATGACTAGGACTAAGCC
23694371 GCAAG
66 GCAAG
* * * * *
23694376 TTAAAATATAAAAATGACCAGGATTGAACCATAAGTCAAAGAATAAAAATGACTAAGACCAAGCC
1 TCAAAAAATAAAAATGACCAGGATTGAACCACAAGTCAAAGAATAAAAATGACTAGGACTAAGCC
* *
23694441 ACGAG
66 GCAAG
* * * * * * *
23694446 TTAGAAAACAAAGATGATC-GAGATTAAACCACAAGTCAAA-ATATAAAGATGACTAGG
1 TCAAAAAATAAAAATGACCAG-GATTGAACCACAAGTCAAAGA-ATAAAAATGACTAGG
23694503 CTTAAATTTT
Statistics
Matches: 207, Mismatches: 57, Indels: 6
0.77 0.21 0.02
Matches are distributed among these distances:
69 2 0.01
70 202 0.98
71 3 0.01
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.17
Consensus pattern (70 bp):
TCAAAAAATAAAAATGACCAGGATTGAACCACAAGTCAAAGAATAAAAATGACTAGGACTAAGCC
GCAAG
Found at i:23694486 original size:140 final size:140
Alignment explanation
Indices: 23694222--23694496 Score: 307
Period size: 140 Copynumber: 2.0 Consensus size: 140
23694212 ATATGACCAC
* * * * * *
23694222 GACTAAGCCGCAAGTCAAAAGATAAAAATGATCGGGATTGAATCGCGAGTCGAAGAATAAAAATG
1 GACTAAGCCGCAAGTCAAAAGATAAAAATGACCAGGATTGAACCACAAGTCAAAGAATAAAAATG
* * * * * ***
23694287 ACTAGGACTAAGCCGCAAGTCAAAAAATAAAGATAAGCAAAATTGAACCGTGAGGCAAAAAATAA
66 ACTAAGACCAAGCCACAAGTCAAAAAACAAAGATAAGCAAAATTAAACCACAAGGCAAAAAATAA
23694352 AGATGGTTGG
131 AGATGGTTGG
* * * *
23694362 GACTAAGCTGCAAGTTAAAATATAAAAATGACCAGGATTGAACCATAAGTCAAAGAATAAAAATG
1 GACTAAGCCGCAAGTCAAAAGATAAAAATGACCAGGATTGAACCACAAGTCAAAGAATAAAAATG
* * * * * * * * *
23694427 ACTAAGACCAAGCCACGAGTTAGAAAACAAAGATGATCGAGATTAAACCACAAGTCAAAATATAA
66 ACTAAGACCAAGCCACAAGTCAAAAAACAAAGATAAGCAAAATTAAACCACAAGGCAAAAAATAA
23694492 AGATG
131 AGATG
23694497 ACTAGGCTTA
Statistics
Matches: 108, Mismatches: 27, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
140 108 1.00
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.17
Consensus pattern (140 bp):
GACTAAGCCGCAAGTCAAAAGATAAAAATGACCAGGATTGAACCACAAGTCAAAGAATAAAAATG
ACTAAGACCAAGCCACAAGTCAAAAAACAAAGATAAGCAAAATTAAACCACAAGGCAAAAAATAA
AGATGGTTGG
Found at i:23694653 original size:100 final size:100
Alignment explanation
Indices: 23694540--23694836 Score: 268
Period size: 100 Copynumber: 3.0 Consensus size: 100
23694530 ACTAAGTTTA
*
23694540 AAAC-TTT-ATTGGTGCCAACCAAACTAGGCTTAAACTTTTCTAGAAGTGTCAGATAAATTGGGC
1 AAACTTTTCATTGGTGCCAACTAAACTAGGCTTAAACTTTTCTAGAAGTGTCAGATAAATTGGGC
* *
23694603 TTAAAATCATCATCAAGTACCAAGTAAATTGGGCTT
66 TTAAAAT-TTCATCAAGTACCAACTAAATTGGGCTT
* * * * *
23694639 -AACTTTTCATTGGTGCCAACTAAGCTAGGCTTAAACTTTTACT-G--GTGCCAAATAAACTAGG
1 AAACTTTTCATTGGTGCCAACTAAACTAGGCTTAAACTTTT-CTAGAAGTGTCAGATAAATTGGG
*** * * **
23694700 CTTAAAATTTCATTGGGTGCCATCTAGGTTGGGCTT
65 CTTAAAATTTCATCAAGTACCAACTAAATTGGGCTT
* * ** * *
23694736 AAACTTTTTAATGAGTGCCAGGTAACCTAGGCTTAAA-TTTT-TATAAGTGTCAGATAAAATTGG
1 AAACTTTTCATTG-GTGCCAACTAAACTAGGCTTAAACTTTTCTAGAAGTGTCAGAT-AAATTGG
* * **
23694799 GCTTAAAATTTTCATCAAATGCCAACTAAGCTGGGCTT
64 GCTTAAAA-TTTCATCAAGTACCAACTAAATTGGGCTT
23694837 GCATGCCTGA
Statistics
Matches: 156, Mismatches: 32, Indels: 18
0.76 0.16 0.09
Matches are distributed among these distances:
96 1 0.01
97 19 0.12
98 38 0.24
99 30 0.19
100 44 0.28
101 24 0.15
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (100 bp):
AAACTTTTCATTGGTGCCAACTAAACTAGGCTTAAACTTTTCTAGAAGTGTCAGATAAATTGGGC
TTAAAATTTCATCAAGTACCAACTAAATTGGGCTT
Found at i:23694685 original size:32 final size:32
Alignment explanation
Indices: 23694634--23694779 Score: 123
Period size: 32 Copynumber: 4.5 Consensus size: 32
23694624 AAGTAAATTG
23694634 GGCTT-AACTTTTCATTGGTGCCAACTAAGCTA
1 GGCTTAAACTTTT-ATTGGTGCCAACTAAGCTA
* * *
23694666 GGCTTAAACTTTTACTGGTGCCAAATAAACTA
1 GGCTTAAACTTTTATTGGTGCCAACTAAGCTA
* * * * * *
23694698 GGCTTAAAATTTCATTGGGTGCCATCTAGGTTG
1 GGCTTAAACTTTTATT-GGTGCCAACTAAGCTA
* ** *
23694731 GGCTTAAACTTTTTAATGAGTGCCAGGTAACCTA
1 GGCTTAAAC-TTTTATTG-GTGCCAACTAAGCTA
*
23694765 GGCTTAAATTTTTAT
1 GGCTTAAACTTTTAT
23694780 AAGTGTCAGA
Statistics
Matches: 87, Mismatches: 23, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
32 34 0.39
33 31 0.36
34 22 0.25
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (32 bp):
GGCTTAAACTTTTATTGGTGCCAACTAAGCTA
Found at i:23694739 original size:65 final size:66
Alignment explanation
Indices: 23694634--23694772 Score: 165
Period size: 65 Copynumber: 2.1 Consensus size: 66
23694624 AAGTAAATTG
** *
23694634 GGCTTAACTTTTCATTGGTGCCAACTAAGCTAGGCTTAAAC-TTTTACTG-GTGCCAAATAAACT
1 GGCTTAAAATTTCATTGGTGCCAACTAAGCTAGGCTTAAACTTTTTAATGAGTGCCAAATAAACT
23694697 A
66 A
* * * * ** *
23694698 GGCTTAAAATTTCATTGGGTGCCATCTAGGTTGGGCTTAAACTTTTTAATGAGTGCCAGGTAACC
1 GGCTTAAAATTTCATT-GGTGCCAACTAAGCTAGGCTTAAACTTTTTAATGAGTGCCAAATAAAC
23694763 TA
65 TA
23694765 GGCTTAAA
1 GGCTTAAA
23694773 TTTTTATAAG
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
64 14 0.23
65 21 0.34
66 7 0.11
67 20 0.32
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (66 bp):
GGCTTAAAATTTCATTGGTGCCAACTAAGCTAGGCTTAAACTTTTTAATGAGTGCCAAATAAACT
A
Found at i:23700511 original size:6 final size:6
Alignment explanation
Indices: 23700501--23700574 Score: 103
Period size: 6 Copynumber: 12.3 Consensus size: 6
23700491 CTTGCTTTCT
* *
23700501 TTATTT TTATTA TTGTTA TTATTA TTATTA TTATTA TTATTA TTATTA
1 TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA
* * *
23700549 TTATTA CTATTA CTATTA CTATTA TT
1 TTATTA TTATTA TTATTA TTATTA TT
23700575 CCCTTTTTAT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 63 1.00
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (6 bp):
TTATTA
Found at i:23700519 original size:9 final size:9
Alignment explanation
Indices: 23700501--23700574 Score: 103
Period size: 9 Copynumber: 8.2 Consensus size: 9
23700491 CTTGCTTTCT
*
23700501 TTATTTTTA
1 TTATTATTA
*
23700510 TTATTGTTA
1 TTATTATTA
23700519 TTATTATTA
1 TTATTATTA
23700528 TTATTATTA
1 TTATTATTA
23700537 TTATTATTA
1 TTATTATTA
23700546 TTATTATTA
1 TTATTATTA
* *
23700555 CTATTACTA
1 TTATTATTA
*
23700564 TTACTATTA
1 TTATTATTA
23700573 TT
1 TT
23700575 CCCTTTTTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 58 1.00
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (9 bp):
TTATTATTA
Found at i:23702454 original size:145 final size:144
Alignment explanation
Indices: 23702175--23702719 Score: 580
Period size: 145 Copynumber: 3.8 Consensus size: 144
23702165 ATTTTGAAGT
* *
23702175 ACCAAAAATCATGAAATATTATAAAATTAAGATCTGAAAAGTTTTCTA-AAAA-TTCGAGCTCAG
1 ACCAAAAATCATGAAATATTATAAAATTAAGATCTGAAAAG-TTTC-ACAAAATTTCGAACTCAA
** * ** * * * *
23702238 GAAAACCAATTTATGAAAATACCCCTATAAGGGTATTTTTGTAATTT-CATTCTTCTCAGGGTAA
64 GAAGGCCAAATTACAAAAATACCCCTATAAGGGTATTTTGGTAATTTACATT-TTTTGA-GGTAT
*
23702302 TGTTGTGATTTCAAATGC
127 TGCTGTGATTTCAAATGC
* *
23702320 ACCAAAAATCATGAAATATTATAAAATTAAAATCTGAAAAGTTTCACAAAATTTCGAACTCAAGG
1 ACCAAAAATCATGAAATATTATAAAATTAAGATCTGAAAAGTTTCACAAAATTTCGAACTCAAGA
* * *
23702385 AGGCCAAATTACAAAAATACCCCTATAAAGGTATTTTGGTCATTTCACATTTTTTGAGGTATTAC
66 AGGCCAAATTACAAAAATACCCCTATAAGGGTATTTTGGTAATTT-ACATTTTTTGAGGTATTGC
23702450 TGTGATTTCAAATGC
130 TGTGATTTCAAATGC
* * * * *
23702465 AACAAAAATCATGAAATATTATGAAATGAAGATTTGAAAAGTTTCACAAAATTT-TAAGCTCGAA
1 ACCAAAAATCATGAAATATTATAAAATTAAGATCTGAAAAGTTTCACAAAATTTCGAA-CTC-AA
* * * * ** *
23702529 -AAGGTCAAATTATAAAAATACCCCTATAATGGTATTTTGCTAATTTTACACATTTTGGGGTATT
64 GAAGGCCAAATTACAAAAATACCCCTATAAGGGTATTTTGGTAA-TTTACATTTTTTGAGGTATT
*
23702593 GC-GATGATTTTAAATGC
128 GCTG-TGATTTCAAATGC
* * * * * *
23702610 ACTAAAAATTATAAAATATTATGAAATTAAGATTTGAAAAGTTTCACAAAATTTTGAACTCAAGA
1 ACCAAAAATCATGAAATATTATAAAATTAAGATCTGAAAAGTTTCACAAAATTTCGAACTCAAGA
* ** * * * *
23702675 ATGCTGAATCACGAAAATACTCCTATGAGGGTATTTTGGTAATTT
66 AGGCCAAATTACAAAAATACCCCTATAAGGGTATTTTGGTAATTT
23702720 TTATACTTTT
Statistics
Matches: 339, Mismatches: 51, Indels: 21
0.82 0.12 0.05
Matches are distributed among these distances:
143 1 0.00
144 16 0.05
145 307 0.91
146 11 0.03
147 4 0.01
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.33
Consensus pattern (144 bp):
ACCAAAAATCATGAAATATTATAAAATTAAGATCTGAAAAGTTTCACAAAATTTCGAACTCAAGA
AGGCCAAATTACAAAAATACCCCTATAAGGGTATTTTGGTAATTTACATTTTTTGAGGTATTGCT
GTGATTTCAAATGC
Found at i:23702710 original size:290 final size:289
Alignment explanation
Indices: 23702177--23702719 Score: 666
Period size: 290 Copynumber: 1.9 Consensus size: 289
23702167 TTTGAAGTAC
* *
23702177 CAAAAATCATGAAATATTATAAAATTAAGATCTGAAAAGTTTTCTAAAAATTCGAGCTCAGGAAA
1 CAAAAATCATGAAATATTATAAAATGAAGATCTGAAAAGTTTTCTAAAAATTCAAGCTCA-GAAA
* * ** *
23702242 ACCAATTTATGAAAATACCCCTATAAGGGTATTTTTGTAATTTCATTCTTCTCAGGGTAATGTTG
65 ACCAAATTATAAAAATACCCCTATAAGGGTATTTTTGTAATTTCACACTTCTCAGGGTAATGTCG
*
23702307 TGATTTCAAATGCACCAAAAATCATGAAATATTATAAAATTAAAATCTGAAAAGTTTCACAAAAT
130 TGATTTCAAATGCACCAAAAATCATAAAATATTATAAAATTAAAATCTGAAAAGTTTCACAAAAT
* * *
23702372 TTCGAACTCAAGGAGGCCAAATTACAAAAATACCCCTATAAAGGTATTTTGGTCATTTCACATTT
195 TTCGAACTCAAGAAGGCCAAATCACAAAAATACCCCTATAAAGGTATTTTGGTAATTTCACATTT
23702437 TTTGAGGTATTACTGTGATTTCAAATGCAA
260 TTTGAGGTATTACTGTGATTTCAAATGCAA
* * *
23702467 CAAAAATCATGAAATATTATGAAATGAAGATTTGAAAAG-TTTC-ACAAAATTTTAAGCTC-GAA
1 CAAAAATCATGAAATATTATAAAATGAAGATCTGAAAAGTTTTCTA-AAAA-TTCAAGCTCAGAA
* * * ** *
23702529 AAGGTCAAATTATAAAAATACCCCTATAATGGTA-TTTTGCTAATTTTACACATT-TTGGGGTAT
64 AA--CCAAATTATAAAAATACCCCTATAAGGGTATTTTTG-TAATTTCACAC-TTCTCAGGGTAA
* * * * * *
23702592 TG-CGATGATTTTAAATGCACTAAAAATTATAAAATATTATGAAATTAAGATTTGAAAAGTTTCA
125 TGTCG-TGATTTCAAATGCACCAAAAATCATAAAATATTATAAAATTAAAATCTGAAAAGTTTCA
* * ** * * * *
23702656 CAAAATTTTGAACTCAAGAATGCTGAATCACGAAAATACTCCTATGAGGGTATTTTGGTAATTT
189 CAAAATTTCGAACTCAAGAAGGCCAAATCACAAAAATACCCCTATAAAGGTATTTTGGTAATTT
23702720 TTATACTTTT
Statistics
Matches: 212, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
288 6 0.03
289 14 0.07
290 190 0.90
291 2 0.01
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.33
Consensus pattern (289 bp):
CAAAAATCATGAAATATTATAAAATGAAGATCTGAAAAGTTTTCTAAAAATTCAAGCTCAGAAAA
CCAAATTATAAAAATACCCCTATAAGGGTATTTTTGTAATTTCACACTTCTCAGGGTAATGTCGT
GATTTCAAATGCACCAAAAATCATAAAATATTATAAAATTAAAATCTGAAAAGTTTCACAAAATT
TCGAACTCAAGAAGGCCAAATCACAAAAATACCCCTATAAAGGTATTTTGGTAATTTCACATTTT
TTGAGGTATTACTGTGATTTCAAATGCAA
Found at i:23718083 original size:18 final size:16
Alignment explanation
Indices: 23718041--23718074 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
23718031 TTAATCTTAC
23718041 TTATCTAATTTTGTTT
1 TTATCTAATTTTGTTT
23718057 TTATCTAATTTTGTTT
1 TTATCTAATTTTGTTT
23718073 TT
1 TT
23718075 TTATTTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.71
Consensus pattern (16 bp):
TTATCTAATTTTGTTT
Found at i:23723105 original size:18 final size:20
Alignment explanation
Indices: 23723072--23723108 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
23723062 TCTTTTTGTG
23723072 AGGAATAAAATGAGTGAAAA
1 AGGAATAAAATGAGTGAAAA
23723092 AGGAA-AAAAT-AGTGAAA
1 AGGAATAAAATGAGTGAAA
23723109 TGATGTGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 5 0.29
20 5 0.29
ACGTcount: A:0.62, C:0.00, G:0.24, T:0.14
Consensus pattern (20 bp):
AGGAATAAAATGAGTGAAAA
Found at i:23723409 original size:8 final size:8
Alignment explanation
Indices: 23723386--23723486 Score: 55
Period size: 8 Copynumber: 12.0 Consensus size: 8
23723376 ACTAATGGAT
23723386 GGAAAGAAA
1 GGAAA-AAA
*
23723395 TGAAAAAA
1 GGAAAAAA
23723403 GGAAAAAAA
1 GG-AAAAAA
*
23723412 AGAAAAAA
1 GGAAAAAA
23723420 TGATGAAAAAA
1 -G--GAAAAAA
23723431 -GAAGAAAA
1 GGAA-AAAA
* *
23723439 GGGAAAAG
1 GGAAAAAA
23723447 GGAAAGAGAA
1 GGAAA-A-AA
23723457 --AAAAAA
1 GGAAAAAA
*
23723463 GAAAAAAA
1 GGAAAAAA
*
23723471 AGAAAAAA
1 GGAAAAAA
23723479 GGAAAAAA
1 GGAAAAAA
23723487 AAAGAATAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 21
0.69 0.11 0.20
Matches are distributed among these distances:
6 2 0.03
7 4 0.06
8 43 0.61
9 14 0.20
10 1 0.01
11 7 0.10
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (8 bp):
GGAAAAAA
Found at i:23723416 original size:17 final size:17
Alignment explanation
Indices: 23723386--23723503 Score: 94
Period size: 17 Copynumber: 6.4 Consensus size: 17
23723376 ACTAATGGAT
* *
23723386 GGAAAGAAATGAAAAAA
1 GGAAAAAAAAGAAAAAA
23723403 GGAAAAAAAAGAAAAAA
1 GGAAAAAAAAGAAAAAA
* *
23723420 TGATGAAAAAAGAAGAAAA
1 GGA-AAAAAAAGAA-AAAA
23723439 GGGAAAAGGGAAAGAGAAAAAAA
1 -GGAAAA---AAA-AG-AAAAAA
*
23723462 AGAAAAAAAAGAAAAAA
1 GGAAAAAAAAGAAAAAA
23723479 GGAAAAAAAAAGAATAAAA
1 GG-AAAAAAAAGAA-AAAA
23723498 -GAAAAA
1 GGAAAAA
23723504 TGAAAGAATG
Statistics
Matches: 83, Mismatches: 8, Indels: 20
0.75 0.07 0.18
Matches are distributed among these distances:
17 29 0.35
18 23 0.28
19 13 0.16
20 2 0.02
22 8 0.10
23 6 0.07
24 2 0.02
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.03
Consensus pattern (17 bp):
GGAAAAAAAAGAAAAAA
Found at i:23723476 original size:14 final size:14
Alignment explanation
Indices: 23723455--23723545 Score: 50
Period size: 15 Copynumber: 6.5 Consensus size: 14
23723445 AGGGAAAGAG
23723455 AAAA-AAAAGAAAA
1 AAAAGAAAAGAAAA
*
23723468 AAAAGAAAA-AAGGA
1 AAAAGAAAAGAA-AA
*
23723482 AAAA-AAAAG-AAT
1 AAAAGAAAAGAAAA
23723494 AAAAGAAAA-ATGAAA
1 AAAAGAAAAGA--AAA
* *
23723509 GAATGAAAATGAAAA
1 AAAAGAAAA-GAAAA
23723524 AATAA-AAAAGAAAGA
1 AA-AAGAAAAGAAA-A
23723539 AAAAGAA
1 AAAAGAA
23723546 GACTTAAATT
Statistics
Matches: 58, Mismatches: 8, Indels: 22
0.66 0.09 0.25
Matches are distributed among these distances:
12 4 0.07
13 15 0.26
14 15 0.26
15 22 0.38
16 1 0.02
17 1 0.02
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.05
Consensus pattern (14 bp):
AAAAGAAAAGAAAA
Found at i:23723479 original size:33 final size:32
Alignment explanation
Indices: 23723424--23723545 Score: 79
Period size: 35 Copynumber: 3.6 Consensus size: 32
23723414 AAAAAATGAT
* **
23723424 GAAAAAAG-AAGAAAAGGGAAAAGGGAAAGAGAA
1 GAAAAAAGAAAAAAAAGAAAAAAGGGAAA-A-AA
*
23723457 -AAAAAAGAAAAAAAAGAAAAAAGGAAAAAAAAA
1 GAAAAAAGAAAAAAAAGAAAAAAGG--GAAAAAA
*
23723490 GAATAAAAGAAAAATGAAAGAATGAAAA-TGAAAAAA
1 GAA-AAAAGAAAAA--AAAGAA--AAAAGGGAAAAAA
*
23723526 TAAAAAAGAAAGAAAAAGAA
1 GAAAAAAGAAA-AAAAAGAA
23723546 GACTTAAATT
Statistics
Matches: 72, Mismatches: 7, Indels: 19
0.73 0.07 0.19
Matches are distributed among these distances:
32 7 0.10
33 15 0.21
34 9 0.12
35 21 0.29
36 10 0.14
37 6 0.08
39 4 0.06
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (32 bp):
GAAAAAAGAAAAAAAAGAAAAAAGGGAAAAAA
Found at i:23723497 original size:9 final size:9
Alignment explanation
Indices: 23723397--23723547 Score: 76
Period size: 9 Copynumber: 16.0 Consensus size: 9
23723387 GAAAGAAATG
*
23723397 AAAAAAGGA
1 AAAAAAAGA
23723406 AAAAAAAGA
1 AAAAAAAGA
*
23723415 AAAAATGATGA
1 AAAAA--AAGA
23723426 AAAAAGAAGA
1 AAAAA-AAGA
23723436 AAAGGGAAAAG-
1 AAA---AAAAGA
** *
23723447 GGAAAGAGA
1 AAAAAAAGA
23723456 AAAAAAAGA
1 AAAAAAAGA
23723465 AAAAAAAG-
1 AAAAAAAGA
*
23723473 AAAAAAGGA
1 AAAAAAAGA
23723482 AAAAAAA-A
1 AAAAAAAGA
*
23723490 GAATAAAAGA
1 -AAAAAAAGA
23723500 AAAATGAAAGA
1 AAAA--AAAGA
* *
23723511 ATGAAAATGA
1 A-AAAAAAGA
23723521 AAAAATAA-A
1 AAAAA-AAGA
*
23723530 AAAGAAAGA
1 AAAAAAAGA
*
23723539 AAAAGAAGA
1 AAAAAAAGA
23723548 CTTAAATTAA
Statistics
Matches: 108, Mismatches: 20, Indels: 28
0.69 0.13 0.18
Matches are distributed among these distances:
8 14 0.13
9 58 0.54
10 14 0.13
11 15 0.14
12 5 0.05
13 2 0.02
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.05
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:23723517 original size:59 final size:60
Alignment explanation
Indices: 23723386--23723536 Score: 159
Period size: 59 Copynumber: 2.5 Consensus size: 60
23723376 ACTAATGGAT
* * ** *
23723386 GGAAAGAAATG-AAAAAAGGAAAAAAAAGAAAAAATGATGAAAAAAGAAGAAAAGGGAAAAG
1 GGAAAG-AATGAAAAAAAAGAAAAAAAAGAAAAAAGGAAAAAAAAAGAAGAAAA-GGAAAAA
*
23723447 GGAAAG-A-GAAAAAAAAGAAAAAAAAGAAAAAAGGAAAAAAAAAGAATAAAA-GAAAAA
1 GGAAAGAATGAAAAAAAAGAAAAAAAAGAAAAAAGGAAAAAAAAAGAAGAAAAGGAAAAA
*
23723504 TGAAAGAATGAAAATGAAAA-AATAAAAAAGAAA
1 GGAAAGAATGAAAA--AAAAGAA-AAAAAAGAAA
23723537 GAAAAAGAAG
Statistics
Matches: 77, Mismatches: 7, Indels: 12
0.80 0.07 0.12
Matches are distributed among these distances:
57 10 0.13
58 2 0.03
59 43 0.56
60 2 0.03
61 20 0.26
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (60 bp):
GGAAAGAATGAAAAAAAAGAAAAAAAAGAAAAAAGGAAAAAAAAAGAAGAAAAGGAAAAA
Found at i:23723530 original size:28 final size:29
Alignment explanation
Indices: 23723458--23723539 Score: 82
Period size: 28 Copynumber: 2.9 Consensus size: 29
23723448 GAAAGAGAAA
* *
23723458 AAAAAGAAAAAAAAGAAAAAAGGAA-AA--
1 AAAAAG-AATAAAAGAAAAAAGAAAGAATG
*
23723485 AAAAAGAATAAAAGAAAAATGAAAGAATG
1 AAAAAGAATAAAAGAAAAAAGAAAGAATG
* *
23723514 AAAATGAA-AAAATAAAAAAGAAAGAA
1 AAAAAGAATAAAAGAAAAAAGAAAGAA
23723540 AAAGAAGACT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
26 15 0.33
27 8 0.17
28 16 0.35
29 7 0.15
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (29 bp):
AAAAAGAATAAAAGAAAAAAGAAAGAATG
Found at i:23725021 original size:41 final size:41
Alignment explanation
Indices: 23724964--23725627 Score: 624
Period size: 41 Copynumber: 16.3 Consensus size: 41
23724954 TGTTGATGAG
* **
23724964 CTTTTATTTTTTAAAGTTGTTATGCCTCTGTTTAGAATAGC
1 CTTTTATTTTTCAAAGTTGTTATGCCTCTGTTTAGAGGAGC
* *
23725005 CTTTTATTTTTCAAAGTTGTTGA-GCCTCTATTTAGAGAAGC
1 CTTTTATTTTTCAAAGTTGTT-ATGCCTCTGTTTAGAGGAGC
* * * * *
23725046 CTTTTTTTCTTTTAAAGTTGTTGTGCCTATGTTTAGAAGAG-
1 CTTTTATT-TTTCAAAGTTGTTATGCCTCTGTTTAGAGGAGC
* * * *
23725087 CTTTTATTTTTCAAAGTTATTGTGTCTCTGTTTAGAAGAGC
1 CTTTTATTTTTCAAAGTTGTTATGCCTCTGTTTAGAGGAGC
* * *
23725128 C-TTTATTTTTCAAAGTTGTTAAGCCTTTATTTAGAGGAG-
1 CTTTTATTTTTCAAAGTTGTTATGCCTCTGTTTAGAGGAGC
* *
23725167 TTTTTA-TTTTCTAAAGTTGTTGTGCCTCTGTTTAGAGGAGC
1 CTTTTATTTTTC-AAAGTTGTTATGCCTCTGTTTAGAGGAGC
* * * *
23725208 CTTTTATTTTTTAAAATTATTATGCCTCTGTTTAAAGGAGC
1 CTTTTATTTTTCAAAGTTGTTATGCCTCTGTTTAGAGGAGC
* * *
23725249 C-TTTATCTTTCCAAAGTTGTTGA-GCTTTTGTTTAGAGGAGC
1 CTTTTAT-TTTTCAAAGTTGTT-ATGCCTCTGTTTAGAGGAGC
* * *
23725290 CTTTTATTTTTTAAAGTCGTTAAGCCAT-TGTTTAGAGGAG-
1 CTTTTATTTTTCAAAGTTGTTATGCC-TCTGTTTAGAGGAGC
* *
23725330 CTTTTATTTTTTAAAGTTGTTGA-GCCTCTATTTAGAGGAGC
1 CTTTTATTTTTCAAAGTTGTT-ATGCCTCTGTTTAGAGGAGC
* * * * *
23725371 ATTTTATTTTTCAAAATCGTTGA-GTCTTTGTTTAGAGGAG-
1 CTTTTATTTTTCAAAGTTGTT-ATGCCTCTGTTTAGAGGAGC
* * *
23725411 CTTTTATTTTTCAAAGTTGTTGTGCTTCTGTTTAAAGGAGC
1 CTTTTATTTTTCAAAGTTGTTATGCCTCTGTTTAGAGGAGC
* *
23725452 CTTTT-TATTTTCTAAAGTTGTTGTGCCTTTGTTTAGAGGAG-
1 CTTTTAT-TTTTC-AAAGTTGTTATGCCTCTGTTTAGAGGAGC
* *
23725493 CTTTTATTTTTCCAAAGTTGTTAAGCCTCTATTTAGAGGAGC
1 CTTTTATTTTT-CAAAGTTGTTATGCCTCTGTTTAGAGGAGC
* ** * * *
23725535 CTTTTATTTTTCAAAATCATTGA-GCCTTTGCTTAGAAGAGC
1 CTTTTATTTTTCAAAGTTGTT-ATGCCTCTGTTTAGAGGAGC
** *
23725576 CTTTTATTTTTCAAAGTCATTGA-GCCTCTGATTAGAGGAGC
1 CTTTTATTTTTCAAAGTTGTT-ATGCCTCTGTTTAGAGGAGC
23725617 C-TTTATTTTTC
1 CTTTTATTTTTC
23725628 TTTTTCAAAG
Statistics
Matches: 519, Mismatches: 80, Indels: 49
0.80 0.12 0.08
Matches are distributed among these distances:
39 6 0.01
40 169 0.33
41 268 0.52
42 76 0.15
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (41 bp):
CTTTTATTTTTCAAAGTTGTTATGCCTCTGTTTAGAGGAGC
Found at i:23725121 original size:82 final size:81
Alignment explanation
Indices: 23724964--23725701 Score: 746
Period size: 82 Copynumber: 9.0 Consensus size: 81
23724954 TGTTGATGAG
* * *
23724964 CTTTTATTTTTTAAAGTTGTTATGCCTCTGTTTAGAATAGCCTTTTATTTTTCAAAGTTGTTGAG
1 CTTTTATTTTTTAAAGTTGTTAAGCCTTTGTTTAGAAGAG-CTTTTATTTTTCAAAGTTGTTGAG
* *
23725029 CCTCTATTTAGAGAAGC
65 CCTCTGTTTAGAGGAGC
* ** * * *
23725046 CTTTTTTTCTTTTAAAGTTGTTGTGCCTATGTTTAGAAGAGCTTTTATTTTTCAAAGTTATTGTG
1 CTTTTATT-TTTTAAAGTTGTTAAGCCTTTGTTTAGAAGAGCTTTTATTTTTCAAAGTTGTTGAG
* *
23725111 TCTCTGTTTAGAAGAGC
65 CCTCTGTTTAGAGGAGC
* * * * *
23725128 C-TTTATTTTTCAAAGTTGTTAAGCCTTTATTTAGAGGAGTTTTTA-TTTTCTAAAGTTGTTGTG
1 CTTTTATTTTTTAAAGTTGTTAAGCCTTTGTTTAGAAGAGCTTTTATTTTTC-AAAGTTGTTGAG
23725191 CCTCTGTTTAGAGGAGC
65 CCTCTGTTTAGAGGAGC
* * * * * *
23725208 CTTTTATTTTTTAAAATTATTATGCCTCTGTTTA-AAGGAGCCTTTATCTTTCCAAAGTTGTTGA
1 CTTTTATTTTTTAAAGTTGTTAAGCCTTTGTTTAGAA-GAGCTTTTAT-TTTTCAAAGTTGTTGA
* *
23725272 GCTTTTGTTTAGAGGAGC
64 GCCTCTGTTTAGAGGAGC
* * * *
23725290 CTTTTATTTTTTAAAGTCGTTAAGCCATTGTTTAGAGGAGCTTTTATTTTTTAAAGTTGTTGAGC
1 CTTTTATTTTTTAAAGTTGTTAAGCCTTTGTTTAGAAGAGCTTTTATTTTTCAAAGTTGTTGAGC
*
23725355 CTCTATTTAGAGGAGC
66 CTCTGTTTAGAGGAGC
* * * * * * * *
23725371 ATTTTATTTTTCAAAATCGTTGAGTCTTTGTTTAGAGGAGCTTTTATTTTTCAAAGTTGTTGTGC
1 CTTTTATTTTTTAAAGTTGTTAAGCCTTTGTTTAGAAGAGCTTTTATTTTTCAAAGTTGTTGAGC
* *
23725436 TTCTGTTTAAAGGAGC
66 CTCTGTTTAGAGGAGC
* ** * *
23725452 CTTTTTATTTTCTAAAGTTGTTGTGCCTTTGTTTAGAGGAGCTTTTATTTTTCCAAAGTTGTTAA
1 C-TTTTATTTTTTAAAGTTGTTAAGCCTTTGTTTAGAAGAGCTTTTATTTTT-CAAAGTTGTTGA
*
23725517 GCCTCTATTTAGAGGAGC
64 GCCTCTGTTTAGAGGAGC
* * ** * * **
23725535 CTTTTATTTTTCAAAATCATTGAGCCTTTGCTTAGAAGAGCCTTTTATTTTTCAAAGTCATTGAG
1 CTTTTATTTTTTAAAGTTGTTAAGCCTTTGTTTAGAAGAG-CTTTTATTTTTCAAAGTTGTTGAG
*
23725600 CCTCTGATTAGAGGAGC
65 CCTCTGTTTAGAGGAGC
* ** * * **
23725617 CTTTATTTTTCTTTTTCAAAGTCATTAAGCCTTTGATTA-AATGAGCATTTATTTTTCAAAGTCA
1 C--T-TTTAT-TTTTT-AAAGTTGTTAAGCCTTTGTTTAGAA-GAGCTTTTATTTTTCAAAGTTG
*
23725681 TTAAGCCTCTGTTTAGAGGAG
60 TTGAGCCTCTGTTTAGAGGAG
23725702 TTATATTTAT
Statistics
Matches: 549, Mismatches: 91, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
79 5 0.01
80 59 0.11
81 137 0.25
82 207 0.38
83 71 0.13
84 1 0.00
85 4 0.01
86 43 0.08
87 22 0.04
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (81 bp):
CTTTTATTTTTTAAAGTTGTTAAGCCTTTGTTTAGAAGAGCTTTTATTTTTCAAAGTTGTTGAGC
CTCTGTTTAGAGGAGC
Found at i:23725189 original size:123 final size:121
Alignment explanation
Indices: 23724964--23725627 Score: 687
Period size: 123 Copynumber: 5.4 Consensus size: 121
23724954 TGTTGATGAG
* * * *
23724964 CTTTTATTTTTTAAAGTTGTTATGCCTCTGTTTAGAATAGCCTTTTATTTTTCAAAGTTGTTGAG
1 CTTTTATTTTTCAAAGTTATTGTGCCTCTGTTTAGAAGAGCC-TTTATTTTTCAAAGTTGTTGAG
* * *
23725029 CCTCTATTTAGAGAAGCCTTTTTTTCTTTTAAAGTTGTTGTGCCTATGTTTAGAAGAG-
65 CCTTTATTTAGAGGAGCC-TTTTAT-TTTTAAAGTTGTTGTGCCTATGTTTAGAAGAGC
* *
23725087 CTTTTATTTTTCAAAGTTATTGTGTCTCTGTTTAGAAGAGCCTTTATTTTTCAAAGTTGTTAAGC
1 CTTTTATTTTTCAAAGTTATTGTGCCTCTGTTTAGAAGAGCCTTTATTTTTCAAAGTTGTTGAGC
* * *
23725152 CTTTATTTAGAGGAG-TTTTTATTTTCTAAAGTTGTTGTGCCTCTGTTTAGAGGAGC
66 CTTTATTTAGAGGAGCCTTTTATTTT-TAAAGTTGTTGTGCCTATGTTTAGAAGAGC
* * * *
23725208 CTTTTATTTTTTAAAATTATTATGCCTCTGTTTA-AAGGAGCCTTTATCTTTCCAAAGTTGTTGA
1 CTTTTATTTTTCAAAGTTATTGTGCCTCTGTTTAGAA-GAGCCTTTAT-TTTTCAAAGTTGTTGA
* * * ** *
23725272 GCTTTTGTTTAGAGGAGCCTTTTATTTTTTAAAGTCGTTAAGCC-ATTGTTTAGAGGAG-
64 GCCTTTATTTAGAGGAGCCTTTTA-TTTTTAAAGTTGTTGTGCCTA-TGTTTAGAAGAGC
* * * * * * * *
23725330 CTTTTATTTTTTAAAGTTGTTGAGCCTCTATTTAGAGGAGCATTTTATTTTTCAAAATCGTTGAG
1 CTTTTATTTTTCAAAGTTATTGTGCCTCTGTTTAGAAGAGC-CTTTATTTTTCAAAGTTGTTGAG
* * * *
23725395 TCTTTGTTTAGAGGAG-CTTTTATTTTTCAAAGTTGTTGTGCTTCTGTTTA-AAGGAGC
65 CCTTTATTTAGAGGAGCCTTTTATTTTT-AAAGTTGTTGTGCCTATGTTTAGAA-GAGC
* * * * *
23725452 CTTTT-TATTTTCTAAAGTTGTTGTGCCTTTGTTTAGAGGAGCTTTTATTTTTCCAAAGTTGTTA
1 CTTTTAT-TTTTC-AAAGTTATTGTGCCTCTGTTTAGAAGAGCCTTTATTTTT-CAAAGTTGTTG
* * ** * * *
23725516 AGCCTCTATTTAGAGGAGCCTTTTATTTTTCAAAATCATTGAGCCTTTGCTTAGAAGAGC
63 AGCCTTTATTTAGAGGAGCCTTTTATTTTT-AAAGTTGTTGTGCCTATGTTTAGAAGAGC
* * * *
23725576 CTTTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCCTTTATTTTTC
1 CTTTTATTTTTCAAAGTTATTGTGCCTCTGTTTAGAAGAGCCTTTATTTTTC
23725628 TTTTTCAAAG
Statistics
Matches: 456, Mismatches: 66, Indels: 39
0.81 0.12 0.07
Matches are distributed among these distances:
119 3 0.01
120 40 0.09
121 66 0.14
122 145 0.32
123 154 0.34
124 45 0.10
125 3 0.01
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (121 bp):
CTTTTATTTTTCAAAGTTATTGTGCCTCTGTTTAGAAGAGCCTTTATTTTTCAAAGTTGTTGAGC
CTTTATTTAGAGGAGCCTTTTATTTTTAAAGTTGTTGTGCCTATGTTTAGAAGAGC
Found at i:23725654 original size:46 final size:46
Alignment explanation
Indices: 23725536--23725672 Score: 160
Period size: 46 Copynumber: 3.1 Consensus size: 46
23725526 TAGAGGAGCC
* *
23725536 TTTTATTTTTCAAAATCATTGAGCCTTTGCTTAGAAGAGCC-----
1 TTTTATTTTTCAAAGTCATTGAGCCTTTGATTAGAAGAGCCTTTAT
* *
23725577 TTTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCCTTTAT
1 TTTTATTTTTCAAAGTCATTGAGCCTTTGATTAGAAGAGCCTTTAT
* * *
23725623 TTTTCTTTTTCAAAGTCATTAAGCCTTTGATTA-AATGAGCATTTAT
1 TTTTATTTTTCAAAGTCATTGAGCCTTTGATTAGAA-GAGCCTTTAT
23725669 TTTT
1 TTTT
23725673 CAAAGTCATT
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
41 37 0.46
45 1 0.01
46 43 0.53
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.46
Consensus pattern (46 bp):
TTTTATTTTTCAAAGTCATTGAGCCTTTGATTAGAAGAGCCTTTAT
Found at i:23725683 original size:40 final size:40
Alignment explanation
Indices: 23724961--23725709 Score: 465
Period size: 41 Copynumber: 18.3 Consensus size: 40
23724951 GATTGTTGAT
* * * * *
23724961 GAGCTTTTATTTTTTAAAGTTGTT-ATGCCTCTGTTTAGAA
1 GAGCTTTTATTTTTCAAAGTCGTTGA-GCCTTTGATTAGAG
* * *
23725001 TAGCCTTTTATTTTTCAAAGTTGTTGAGCCTCT-ATTTAGAG
1 GAG-CTTTTATTTTTCAAAGTCGTTGAGCCTTTGA-TTAGAG
* * * * * * * *
23725042 AAGCCTTTTTTTCTTTTAAAGTTGTTGTGCCTATGTTTAGAA
1 GAG-CTTTTATT-TTTCAAAGTCGTTGAGCCTTTGATTAGAG
** * * * * *
23725084 GAGCTTTTATTTTTCAAAGTTATTGTGTCTCTGTTTAGAA
1 GAGCTTTTATTTTTCAAAGTCGTTGAGCCTTTGATTAGAG
* * *
23725124 GAGCCTTTATTTTTCAAAGTTGTTAAGCCTTT-ATTTAGAG
1 GAGCTTTTATTTTTCAAAGTCGTTGAGCCTTTGA-TTAGAG
* * * * *
23725164 GAGTTTTTA-TTTTCTAAAGTTGTTGTGCCTCTGTTTAGAG
1 GAGCTTTTATTTTTC-AAAGTCGTTGAGCCTTTGATTAGAG
* * ** * * *
23725204 GAGCCTTTTATTTTTTAAAATTATT-ATGCCTCTGTTTAAAG
1 GAG-CTTTTATTTTTCAAAGTCGTTGA-GCCTTTGATTAGAG
* * * * *
23725245 GAGCCTTTATCTTTCCAAAGTTGTTGAGCTTTTGTTTAGAG
1 GAGCTTTTAT-TTTTCAAAGTCGTTGAGCCTTTGATTAGAG
* * * *
23725286 GAGCCTTTTATTTTTTAAAGTCGTTAAGCCATTGTTTAGAG
1 GAG-CTTTTATTTTTCAAAGTCGTTGAGCCTTTGATTAGAG
* * *
23725327 GAGCTTTTATTTTTTAAAGTTGTTGAGCCTCT-ATTTAGAG
1 GAGCTTTTATTTTTCAAAGTCGTTGAGCCTTTGA-TTAGAG
* * *
23725367 GAGCATTTTATTTTTCAAAATCGTTGAGTCTTTGTTTAGAG
1 GAGC-TTTTATTTTTCAAAGTCGTTGAGCCTTTGATTAGAG
* * * *
23725408 GAGCTTTTATTTTTCAAAGTTGTTGTG-CTTCTGTTTAAAG
1 GAGCTTTTATTTTTCAAAGTCGTTGAGCCTT-TGATTAGAG
* * *
23725448 GAGCCTTTT-TATTTTCTAAAGTTGTTGTGCCTTTGTTTAGAG
1 GAG-CTTTTAT-TTTTC-AAAGTCGTTGAGCCTTTGATTAGAG
* * *
23725490 GAGCTTTTATTTTTCCAAAGTTGTTAAGCCTCT-ATTTAGAG
1 GAGCTTTTATTTTT-CAAAGTCGTTGAGCCTTTGA-TTAGAG
* * * *
23725531 GAGCCTTTTATTTTTCAAAATCATTGAGCCTTTGCTTAGAA
1 GAG-CTTTTATTTTTCAAAGTCGTTGAGCCTTTGATTAGAG
* *
23725572 GAGCCTTTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAG
1 GAG-CTTTTATTTTTCAAAGTCGTTGAGCCTTTGATTAGAG
* * * * *
23725613 GAGCCTTTATTTTTCTTTTTCAAAGTCATTAAGCCTTTGATTAAAT
1 GAG-C-----TTTTATTTTTCAAAGTCGTTGAGCCTTTGATTAGAG
* * * * *
23725659 GAGCATTTATTTTTCAAAGTCATTAAGCCTCTGTTTAGAG
1 GAGCTTTTATTTTTCAAAGTCGTTGAGCCTTTGATTAGAG
*
23725699 GAG-TTATATTT
1 GAGCTTTTATTT
23725710 ATTATTTTCG
Statistics
Matches: 581, Mismatches: 96, Indels: 65
0.78 0.13 0.09
Matches are distributed among these distances:
39 14 0.02
40 194 0.33
41 262 0.45
42 73 0.13
43 3 0.01
45 1 0.00
46 34 0.06
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (40 bp):
GAGCTTTTATTTTTCAAAGTCGTTGAGCCTTTGATTAGAG
Found at i:23726457 original size:31 final size:31
Alignment explanation
Indices: 23726412--23726471 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
23726402 TTTTCTAGAA
*
23726412 AATTTTTCAACCTCGATTGAATTTTTTGGTG
1 AATTTTCCAACCTCGATTGAATTTTTTGGTG
*
23726443 AATTTTCCAGCCTCGATTGAATTTTTTGG
1 AATTTTCCAACCTCGATTGAATTTTTTGG
23726472 AGAGTTTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.22, C:0.15, G:0.17, T:0.47
Consensus pattern (31 bp):
AATTTTCCAACCTCGATTGAATTTTTTGGTG
Found at i:23731172 original size:20 final size:21
Alignment explanation
Indices: 23731149--23731194 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
23731139 ATTTTAGTTA
23731149 TATTAT-TTTTAATGA-ATTTT
1 TATTATATTTTAAT-ATATTTT
23731169 TATT-TATTTTAATATATTTT
1 TATTATATTTTAATATATTTT
23731189 TATTAT
1 TATTAT
23731195 GTTAATTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 2 0.09
20 20 0.87
21 1 0.04
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TATTATATTTTAATATATTTT
Found at i:23732366 original size:361 final size:362
Alignment explanation
Indices: 23731771--23732561 Score: 949
Period size: 361 Copynumber: 2.2 Consensus size: 362
23731761 TTTATCCTAC
* * * * *
23731771 AAAAGGCATCTCA-CAAGTTTGAGTTTAGATCTCTACATATATATCATACCATATTCATACATTT
1 AAAAGGCACCTCATCAAGTTTGAGTTTAGATCTTTACATATATATCATACCATATCCACACATTC
* * * *
23731835 TTTCAATGTAGGATTGGGGCAATTACAATCTCTACCTTTAAAGCTTGGCATCTCTATTAAACCGA
66 TTTCAATGTAGGATTGGGGCAATTACAATCTCTAACTTTAAAGCTTGACATCCCTATCAAACCGA
* * * * * ** *
23731900 GTTAAACCACAGGACTAAAATGACACTAGATGTTAGGATTTAGTGACTCCTAGAGCCTTATCGTG
131 GTCAAACCACAGGACCAAAATCACACCAGATATTAGGATTTAACGACTCATAGAGCCTTATCGTG
*
23731965 TAGCACTTAATGACTCCCCAGCCCTACTATATAGCACTTAGTAACTCCCACGATGTAGCACTTAG
196 TAGCACTTAATGACTCCCCAGCCCCACTATATAGCACTTAGTAACTCCCACGATGTAGCACTTAG
* * ** * *
23732030 TTCTT-ACTGACTAGTAACCGTTCTGATACTATTTGTGGAGACCTACACCCAACCTGTGAGGTAT
261 TTCTTGA-TGACTACTAACCGTTCTGATACCATTTGTAAAGACCTACACCCAACCTGCGAGGTAC
* *
23732094 TATCCT-TTTGATATGAAGGTCTCATGATTTTGTCTCAA
325 TAT-CTATTTGATATGAAAGTCTCATGATTTTGTCCCAA
**
23732132 AAAAGGTGCCTC-TCAAGTTTGAGTTTAGATCTTTACATATATATCATACCATATCCACACATTC
1 AAAAGGCACCTCATCAAGTTTGAGTTTAGATCTTTACATATATATCATACCATATCCACACATTC
* * * * *
23732196 TTTCAATGTAGGATTAGGGGC-ATTACAATCTTTTCAATTTTAAAGCTTGACGTCCCTATCGAGC
66 TTTCAATGTAGGATT-GGGGCAATTACAATC-TCT-AACTTTAAAGCTTGACATCCCTATCAAAC
* * *
23732260 TGAGTCCAACCACAGGACCAAAATCACACCAGATATTGGGATTTTAACGA-T-AT-GA-CCTTAT
128 CGAGTCAAACCACAGGACCAAAATCACACCAGATATTAGGA-TTTAACGACTCATAGAGCCTTAT
* * * *
23732321 CGTGTAGCACTTAATGACT-CTCATGGCCCCACTGTATAGCACTTAGTAACTCCTATGATGTAGC
192 CGTGTAGCACTTAATGACTCCCCA--GCCCCACTATATAGCACTTAGTAACTCCCACGATGTAGC
* * *
23732385 ACTTAGTTTTTGATGACTACTAACCGTTCTGATACCATTTGTAAAGACCTATATCCAACCTGCGA
255 ACTTAGTTCTTGATGACTACTAACCGTTCTGATACCATTTGTAAAGACCTACACCCAACCTGCGA
* * * * *
23732450 GGTGCTGTCTACTTTGATCTGAAAGTCTCATGGTTTTGTCCCAC
320 GGTACTATCTA-TTTGATATGAAAGTCTCATGATTTTGTCCCAA
* * *
23732494 AAAAGGCACTTCAT-AAGTTTGGGTTTAGAT-TTCTACATATATATCATACCATATCCACATATT
1 AAAAGGCACCTCATCAAGTTTGAGTTTAGATCTT-TACATATATATCATACCATATCCACACATT
23732557 CTTTC
65 CTTTC
23732562 GTTGTGGGAT
Statistics
Matches: 365, Mismatches: 53, Indels: 23
0.83 0.12 0.05
Matches are distributed among these distances:
359 3 0.01
360 27 0.07
361 179 0.49
362 94 0.26
363 56 0.15
364 6 0.02
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (362 bp):
AAAAGGCACCTCATCAAGTTTGAGTTTAGATCTTTACATATATATCATACCATATCCACACATTC
TTTCAATGTAGGATTGGGGCAATTACAATCTCTAACTTTAAAGCTTGACATCCCTATCAAACCGA
GTCAAACCACAGGACCAAAATCACACCAGATATTAGGATTTAACGACTCATAGAGCCTTATCGTG
TAGCACTTAATGACTCCCCAGCCCCACTATATAGCACTTAGTAACTCCCACGATGTAGCACTTAG
TTCTTGATGACTACTAACCGTTCTGATACCATTTGTAAAGACCTACACCCAACCTGCGAGGTACT
ATCTATTTGATATGAAAGTCTCATGATTTTGTCCCAA
Found at i:23741097 original size:16 final size:16
Alignment explanation
Indices: 23741076--23741110 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
23741066 TTTGATGACA
23741076 TATCTTTAACAATTGG
1 TATCTTTAACAATTGG
*
23741092 TATCTTTAACATTTGG
1 TATCTTTAACAATTGG
23741108 TAT
1 TAT
23741111 GAGCTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (16 bp):
TATCTTTAACAATTGG
Found at i:23748321 original size:15 final size:15
Alignment explanation
Indices: 23748298--23748328 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23748288 GTTGTAAGAT
23748298 TTTAATATAATTTTA
1 TTTAATATAATTTTA
*
23748313 TTTAGTATAATTTTA
1 TTTAATATAATTTTA
23748328 T
1 T
23748329 GAGCAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (15 bp):
TTTAATATAATTTTA
Found at i:23761117 original size:47 final size:47
Alignment explanation
Indices: 23761040--23761246 Score: 252
Period size: 47 Copynumber: 4.3 Consensus size: 47
23761030 TTTTGAGAAC
* * *
23761040 AGATGAAATTTTTAAAGTTATTAAGCCTCTGCTTATAGGAGCTTTTTCA
1 AGATG-AA-TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCA
* * * *
23761089 AAATGAAGTTTAAAGTTGTTGAGTCTCTGCTTAGAGGAGCTTTTTCG
1 AGATGAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCA
* * *
23761136 AGATAGATTTTTAAAGTTGTTGAACCTTTGCTTAGAGGAGCTTTTTCA
1 AGAT-GAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCA
* * **
23761184 TGATGAATTTTAAAGTTGTTGAGCCTCTACTTAGATAAGCTTTTTCA
1 AGATGAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCA
23761231 AGATGAATTTTTAAAG
1 AGATGAA-TTTTAAAG
23761247 ATAAATTTTA
Statistics
Matches: 134, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
47 80 0.60
48 50 0.37
49 4 0.03
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.41
Consensus pattern (47 bp):
AGATGAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCA
Found at i:23761175 original size:95 final size:95
Alignment explanation
Indices: 23761040--23761246 Score: 274
Period size: 95 Copynumber: 2.2 Consensus size: 95
23761030 TTTTGAGAAC
*
23761040 AGATGAAATTTTTAAAGTTATTAAGCCTCTGCTTATAGGAGCTTTTTCAAAATGAAGTTTAAAGT
1 AGATG-AATTTTTAAAGTTATTAAGCCTCTGCTTAGAGGAGCTTTTTCAAAATGAAGTTTAAAGT
* * * *
23761105 TGTTGAGTCTCTGCTTAGAGGAGCTTTTTCG
65 TGTTGAGCCTCTACTTAGAGAAGCTTTTTCA
* * ** *
23761136 AGAT-AGATTTTTAAAGTTGTTGAA-CCTTTGCTTAGAGGAGCTTTTTCATGATGAATTTTAAAG
1 AGATGA-ATTTTTAAAGTTATT-AAGCCTCTGCTTAGAGGAGCTTTTTCAAAATGAAGTTTAAAG
*
23761199 TTGTTGAGCCTCTACTTAGATAAGCTTTTTCA
64 TTGTTGAGCCTCTACTTAGAGAAGCTTTTTCA
23761231 AGATGAATTTTTAAAG
1 AGATGAATTTTTAAAG
23761247 ATAAATTTTA
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
94 1 0.01
95 89 0.92
96 7 0.07
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.41
Consensus pattern (95 bp):
AGATGAATTTTTAAAGTTATTAAGCCTCTGCTTAGAGGAGCTTTTTCAAAATGAAGTTTAAAGTT
GTTGAGCCTCTACTTAGAGAAGCTTTTTCA
Found at i:23761381 original size:43 final size:43
Alignment explanation
Indices: 23761332--23761518 Score: 168
Period size: 43 Copynumber: 4.3 Consensus size: 43
23761322 AATGAGCCTC
* *
23761332 TTTAAATTTTCAAAAGTCGTTGAGACTTTGCTCAGATGAGCTT
1 TTTAAATTTTCAAAAGTCGTTGAGACTTTGCTCAAAGGAGCTT
* * * * * *
23761375 TCTAAATTTT-TAAAGTTGTTAAG-CATTTGCTTAAAGGAACCTT
1 TTTAAATTTTCAAAAGTCGTTGAGAC-TTTGCTCAAAGG-AGCTT
* * * *
23761418 TTTAAATTTTCAAAAGTCATTGAGCCTTTACTTAGAA-GAGCTCT
1 TTTAAATTTTCAAAAGTCGTTGAGACTTTGCTCA-AAGGAGCT-T
* *
23761462 TTAAAATTTT-AAAAGTCGTTGA-ACCTCTGCTCAAAGGAGCTT
1 TTTAAATTTTCAAAAGTCGTTGAGA-CTTTGCTCAAAGGAGCTT
23761504 TTTAAATTTTCAAAA
1 TTTAAATTTTCAAAA
23761519 ATGTCATTGA
Statistics
Matches: 113, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.01
42 31 0.27
43 51 0.45
44 27 0.24
45 3 0.03
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (43 bp):
TTTAAATTTTCAAAAGTCGTTGAGACTTTGCTCAAAGGAGCTT
Found at i:23761381 original size:86 final size:86
Alignment explanation
Indices: 23761289--23761528 Score: 218
Period size: 86 Copynumber: 2.8 Consensus size: 86
23761279 AGGAACCTTT
* * * * * *
23761289 TTTAAATTTCAAAAGCCGTTAAGTC-TCTACTTGAATGAGCCTCTTTAAATTTTCAAAAGTCGTT
1 TTTAAATTTTAAAAGTCGTTAAG-CATCTACTTAAAGGAACCTCTTTAAATTTTCAAAAGTCATT
* *
23761353 GAGACTTTGCTCAGATGAGCT-
65 GAGACTTTACTCAGAAGAGCTC
* * * * *
23761374 TTCTAAATTTTTAAAGTTGTTAAGCATTTGCTTAAAGGAACCTTTTTAAATTTTCAAAAGTCATT
1 TT-TAAATTTTAAAAGTCGTTAAGCATCTACTTAAAGGAACCTCTTTAAATTTTCAAAAGTCATT
* *
23761439 GAGCCTTTACTTAGAAGAGCTC
65 GAGACTTTACTCAGAAGAGCTC
* * * * *
23761461 TTTAAAATTTTAAAAGTCGTTGAA-CCTCTGCTCAAAGG-AGCTTTTTAAATTTTCAAAAATGTC
1 TTT-AAATTTTAAAAGTCGTT-AAGCATCTACTTAAAGGAACCTCTTTAAATTTTC-AAAA-GTC
23761524 ATTGA
62 ATTGA
23761529 AGCTCTATTT
Statistics
Matches: 127, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
85 3 0.02
86 82 0.65
87 32 0.25
88 10 0.08
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (86 bp):
TTTAAATTTTAAAAGTCGTTAAGCATCTACTTAAAGGAACCTCTTTAAATTTTCAAAAGTCATTG
AGACTTTACTCAGAAGAGCTC
Found at i:23761717 original size:18 final size:18
Alignment explanation
Indices: 23761694--23761733 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
23761684 ATATTATATT
23761694 TTTTCTCTTT-TCTCTTTC
1 TTTTCT-TTTCTCTCTTTC
*
23761712 TTTTCTTTTCTTTCTTTC
1 TTTTCTTTTCTCTCTTTC
23761730 TTTT
1 TTTT
23761734 GGCAGTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTCTTTTCTCTCTTTC
Found at i:23763702 original size:10 final size:10
Alignment explanation
Indices: 23763687--23763722 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
23763677 AAAATTATTC
23763687 TTTTAATAAA
1 TTTTAATAAA
23763697 TTTTAATAAA
1 TTTTAATAAA
*
23763707 TTTTAATTAA
1 TTTTAATAAA
23763717 TTTTAA
1 TTTTAA
23763723 GATTCTGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTAATAAA
Found at i:23765629 original size:64 final size:64
Alignment explanation
Indices: 23765507--23765629 Score: 149
Period size: 64 Copynumber: 1.9 Consensus size: 64
23765497 AAAATTAAAT
* ** * *
23765507 GGGATTATTGAAGGCATTTTTGGCCAAAAATGCCTTCAATAATCCATTCACAAAATTTTGGAGA
1 GGGATTATTGAAGGCATTTTTAGCCAAAAACACCTTCAATAATCCATTAAAAAAATTTTGGAGA
* * * *
23765571 GGGATTGTTGAAGGCGTTTTTAGTCAAAAACACGTTCAATAATCCA-TAAAAAATATTTT
1 GGGATTATTGAAGGCATTTTTAGCCAAAAACACCTTCAATAATCCATTAAAAAA-ATTTT
23765630 TTGTATGGAT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
63 5 0.10
64 44 0.90
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.33
Consensus pattern (64 bp):
GGGATTATTGAAGGCATTTTTAGCCAAAAACACCTTCAATAATCCATTAAAAAAATTTTGGAGA
Found at i:23767288 original size:12 final size:12
Alignment explanation
Indices: 23767271--23767301 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
23767261 CACAATAGTT
23767271 GCTATACCAACA
1 GCTATACCAACA
23767283 GCTATACCAACA
1 GCTATACCAACA
23767295 GCTATAC
1 GCTATAC
23767302 ATATAGTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.32, G:0.10, T:0.19
Consensus pattern (12 bp):
GCTATACCAACA
Found at i:23772654 original size:28 final size:28
Alignment explanation
Indices: 23772610--23772710 Score: 157
Period size: 28 Copynumber: 3.6 Consensus size: 28
23772600 AAAAAAAAAT
*
23772610 CACTAACACACAACTAACTTCCATAAAC
1 CACTAACACACATCTAACTTCCATAAAC
* *
23772638 CATTAACACACATCTAACTTCCATAAAT
1 CACTAACACACATCTAACTTCCATAAAC
*
23772666 CACTAACAAACATCTAACTTCCATAAAC
1 CACTAACACACATCTAACTTCCATAAAC
*
23772694 TACTAACACACATCTAA
1 CACTAACACACATCTAA
23772711 TTTTTCATTA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.23
Consensus pattern (28 bp):
CACTAACACACATCTAACTTCCATAAAC
Found at i:23778793 original size:2 final size:2
Alignment explanation
Indices: 23778786--23778818 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
23778776 GCTTCTACTT
23778786 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23778819 CAGAGTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:23780925 original size:17 final size:19
Alignment explanation
Indices: 23780886--23780925 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 19
23780876 TCAATTCATA
23780886 AATCATTGCAAAATATAGT
1 AATCATTGCAAAATATAGT
*
23780905 -ATCATT-C-AAATATCGT
1 AATCATTGCAAAATATAGT
23780921 AATCA
1 AATCA
23780926 AACCAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
16 8 0.42
17 5 0.26
18 6 0.32
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.33
Consensus pattern (19 bp):
AATCATTGCAAAATATAGT
Found at i:23780987 original size:48 final size:47
Alignment explanation
Indices: 23780929--23781020 Score: 130
Period size: 47 Copynumber: 1.9 Consensus size: 47
23780919 GTAATCAAAC
* * *
23780929 CAAATCATGGATCAGTCATTAAAAATCATCGTAAATCATCTTTATATA
1 CAAATCATGGATCAATC-TTAAAAATCATCATAAATCATCATTATATA
* *
23780977 CAAATTATGGATCAATCTTTAAAATCATCATAAATCATCATTAT
1 CAAATCATGGATCAATCTTAAAAATCATCATAAATCATCATTAT
23781021 CATTCGTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 24 0.62
48 15 0.38
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (47 bp):
CAAATCATGGATCAATCTTAAAAATCATCATAAATCATCATTATATA
Found at i:23782694 original size:88 final size:89
Alignment explanation
Indices: 23782544--23782720 Score: 275
Period size: 88 Copynumber: 2.0 Consensus size: 89
23782534 TTCTCTATAA
* *
23782544 CTAGGTTTTCTTTCATTTAACAATTCAACACTTTTTCTTTTACTAATTAGTCTCTTAATAAACTG
1 CTAGGTTTTCTTTCATTTAACAACTCAACACCTTTTCTTTTACTAATTAGTCTCTTAATAAACTG
* *
23782609 GTGAGCTTTGGTATTAGTTTAGCC
66 ATGAGCTTTGGTATTAGTCTAGCC
* * *
23782633 CTAGG-TTTCTTTCATTTAATAACTCAGCCCCTTTTCTTTTACTAATTAGTCTCTTAATAAACTG
1 CTAGGTTTTCTTTCATTTAACAACTCAACACCTTTTCTTTTACTAATTAGTCTCTTAATAAACTG
*
23782697 ATGGGCTTTGGTATTAGTCTAGCC
66 ATGAGCTTTGGTATTAGTCTAGCC
23782721 TAATTATTAT
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
88 75 0.94
89 5 0.06
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.45
Consensus pattern (89 bp):
CTAGGTTTTCTTTCATTTAACAACTCAACACCTTTTCTTTTACTAATTAGTCTCTTAATAAACTG
ATGAGCTTTGGTATTAGTCTAGCC
Found at i:23787848 original size:90 final size:90
Alignment explanation
Indices: 23787720--23787892 Score: 310
Period size: 90 Copynumber: 1.9 Consensus size: 90
23787710 CTATAACTAT
*
23787720 GTTTTCTTTCATTTAATAACTCAGCCTTTTTTTCTTTTACTAATTAGTCTCTTAATAAACTGGTG
1 GTTTTCTTTCATTTAATAACTCAGCCTTTTTTTCTTTTACTAATTAGTCTCTTAATAAACTGATG
23787785 AGCTTTGATATTAGTCTAGCCCTAG
66 AGCTTTGATATTAGTCTAGCCCTAG
* *
23787810 GTTTTCTTTCATTTAATAACTTAGCCTTTTTTTTTTTTACTAATTAGTCTCTTAATAAACTGATG
1 GTTTTCTTTCATTTAATAACTCAGCCTTTTTTTCTTTTACTAATTAGTCTCTTAATAAACTGATG
*
23787875 AGCTTTGGTATTAGTCTA
66 AGCTTTGATATTAGTCTA
23787893 ATCCAATTAT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.49
Consensus pattern (90 bp):
GTTTTCTTTCATTTAATAACTCAGCCTTTTTTTCTTTTACTAATTAGTCTCTTAATAAACTGATG
AGCTTTGATATTAGTCTAGCCCTAG
Found at i:23791338 original size:6 final size:6
Alignment explanation
Indices: 23791324--23791357 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
23791314 AATTATTTGT
* *
23791324 GCTCAA GCTCTA GCTCTA GCTCTA GCTCGA GCTC
1 GCTCTA GCTCTA GCTCTA GCTCTA GCTCTA GCTC
23791358 AAGATATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.35, G:0.21, T:0.26
Consensus pattern (6 bp):
GCTCTA
Found at i:23796554 original size:3 final size:3
Alignment explanation
Indices: 23796546--23796609 Score: 67
Period size: 3 Copynumber: 21.7 Consensus size: 3
23796536 TAAAAAAGGG
* * * *
23796546 AAT AAT AAT AAT AAT AAT AAT AAA AAT AA- AAA AAT AAT CAT AAT CAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
23796593 AAT CAT AAT CAT AAT AA
1 AAT AAT AAT AAT AAT AA
23796610 AGAAAGCAAC
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
2 2 0.04
3 47 0.96
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:23797649 original size:23 final size:24
Alignment explanation
Indices: 23797623--23797671 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
23797613 CTCCCAAATT
*
23797623 TAGTATATTTTC-TAGACTAAAAC
1 TAGTATATTTTCGTAGACCAAAAC
23797646 TAGTATATTTTCGTAGACCAAAAC
1 TAGTATATTTTCGTAGACCAAAAC
23797670 TA
1 TA
23797672 TCTTTTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (24 bp):
TAGTATATTTTCGTAGACCAAAAC
Found at i:23798013 original size:46 final size:46
Alignment explanation
Indices: 23797960--23798053 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
23797950 TTATTTTAAT
23797960 TTTTCAAAAAAATATATATAGGTTAATAAATAAAATAAATTGTATG
1 TTTTCAAAAAAATATATATAGGTTAATAAATAAAATAAATTGTATG
23798006 TTTTCAAAAAAATATATATAGGTTAATAAATAAAATAAATTGTATG
1 TTTTCAAAAAAATATATATAGGTTAATAAATAAAATAAATTGTATG
23798052 TT
1 TT
23798054 AGTTATTATT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.38
Consensus pattern (46 bp):
TTTTCAAAAAAATATATATAGGTTAATAAATAAAATAAATTGTATG
Found at i:23798017 original size:23 final size:24
Alignment explanation
Indices: 23797981--23798054 Score: 82
Period size: 23 Copynumber: 3.2 Consensus size: 24
23797971 ATATATATAG
23797981 GTTAATAAATAAAATAAATTGTAT
1 GTTAATAAATAAAATAAATTGTAT
* * * *
23798005 GTT-TTCAAA-AAAATATA-TATAG
1 GTTAAT-AAATAAAATAAATTGTAT
23798027 GTTAATAAATAAAATAAATTGTAT
1 GTTAATAAATAAAATAAATTGTAT
23798051 GTTA
1 GTTA
23798055 GTTATTATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
22 9 0.24
23 16 0.42
24 13 0.34
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.38
Consensus pattern (24 bp):
GTTAATAAATAAAATAAATTGTAT
Found at i:23798632 original size:9 final size:9
Alignment explanation
Indices: 23798620--23798651 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
23798610 AAGATGAAAA
23798620 AAAAAAGAC
1 AAAAAAGAC
23798629 -AAAAAGAC
1 AAAAAAGAC
23798637 AAAAAAGAC
1 AAAAAAGAC
23798646 AAAAAA
1 AAAAAA
23798652 AAATGCTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.81, C:0.09, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAGAC
Found at i:23798640 original size:7 final size:8
Alignment explanation
Indices: 23798621--23798650 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
23798611 AGATGAAAAA
23798621 AAAAAGAC
1 AAAAAGAC
23798629 AAAAAGAC
1 AAAAAGAC
23798637 AAAAAAGAC
1 -AAAAAGAC
23798646 AAAAA
1 AAAAA
23798651 AAAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.80, C:0.10, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAGAC
Found at i:23798846 original size:13 final size:13
Alignment explanation
Indices: 23798816--23798858 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
23798806 AAGTTAGGAT
23798816 AAAAAAAAGAG-A
1 AAAAAAAAGAGCA
23798828 TGAAAAAAAAG-GCA
1 --AAAAAAAAGAGCA
23798842 AAAAAAAAGAGCA
1 AAAAAAAAGAGCA
23798855 AAAA
1 AAAA
23798859 CAATTTTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 9 0.33
13 8 0.30
14 10 0.37
ACGTcount: A:0.77, C:0.05, G:0.16, T:0.02
Consensus pattern (13 bp):
AAAAAAAAGAGCA
Found at i:23801487 original size:15 final size:15
Alignment explanation
Indices: 23801467--23801498 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23801457 AATAAAAGGA
*
23801467 AAGGAAGAAGAAAAG
1 AAGGAAAAAGAAAAG
23801482 AAGGAAAAAGAAAAG
1 AAGGAAAAAGAAAAG
23801497 AA
1 AA
23801499 ATGAATGGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (15 bp):
AAGGAAAAAGAAAAG
Found at i:23802522 original size:32 final size:32
Alignment explanation
Indices: 23802396--23802700 Score: 114
Period size: 32 Copynumber: 9.3 Consensus size: 32
23802386 CTGGCCCTAA
** **
23802396 TGAAAATTTAAGCCCAAG-TTACCTGGCACTTG
1 TGAAAATTTAAGCCC-AGCTTAGTTGGCACCAG
* * *
23802428 ATGAAAAGTTTAAGTCCAACTTAGTTGGCACCCAA
1 -TGAAAA-TTTAAGCCCAGCTTAGTTGGCA-CCAG
* **
23802463 TGAAATTTTAA-CCCTAATTTA-TCTGGCACCAG
1 TGAAAATTTAAGCCC-AGCTTAGT-TGGCACCAG
* * *
23802495 TGAAAGTTTAAGCCCAGCTTAGTTGGCACTAA
1 TGAAAATTTAAGCCCAGCTTAGTTGGCACCAG
* ** * *
23802527 TGAAAATTTAAGTCCAATTTACTTGGCACCTG
1 TGAAAATTTAAGCCCAGCTTAGTTGGCACCAG
** * * ** **
23802559 ATGCTGATTTTAAGCCCAGTTTACCTGGCACTTG
1 -TG-AAAATTTAAGCCCAGCTTAGTTGGCACCAG
* * * *
23802593 TAGAAAAATTTTAGCCTAGCTTGGTTGGCACCAA
1 T-G-AAAATTTAAGCCCAGCTTAGTTGGCACCAG
* * * * * ** *
23802627 TTAAAGTTTAAGCCTAGTTTACTTGGTGCTAG
1 TGAAAATTTAAGCCCAGCTTAGTTGGCACCAG
* * * *
23802659 TGAAAATTTAAGCCTAGCTTCGCTAGCACCAG
1 TGAAAATTTAAGCCCAGCTTAGTTGGCACCAG
23802691 TG-AAATTTAA
1 TGAAAATTTAA
23802701 AACTCAGTTT
Statistics
Matches: 198, Mismatches: 64, Indels: 22
0.70 0.23 0.08
Matches are distributed among these distances:
31 8 0.04
32 96 0.48
33 29 0.15
34 64 0.32
35 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (32 bp):
TGAAAATTTAAGCCCAGCTTAGTTGGCACCAG
Found at i:23802638 original size:100 final size:97
Alignment explanation
Indices: 23802396--23802652 Score: 223
Period size: 100 Copynumber: 2.6 Consensus size: 97
23802386 CTGGCCCTAA
** ** * *
23802396 TGAAAATTTAAGCCCAAG-TTACCTGGCACTTGATGAAAAGTTTAAGTCCAACTTAGTTGGCACC
1 TGAAAATTTAAGCCC-AGCTTAGTTGGCAC-CAATG-AAAGTTTAAGTCCAATTTACTTGGCACC
*
23802460 CAATGAAATTTTAACCCTAATTTATCTGGCACCAG
63 CAATGAAATTTTAACCCTAATTTACCTGGCACCAG
* * * **
23802495 TGAAAGTTTAAGCCCAGCTTAGTTGGCACTAATGAAAATTTAAGTCCAATTTACTTGGCACCTGA
1 TGAAAATTTAAGCCCAGCTTAGTTGGCACCAATGAAAGTTTAAGTCCAATTTACTTGGCACCCAA
** * **
23802560 TGCTGATTTTAAGCCC-AGTTTACCTGGCACTTG
66 TG-AAATTTTAA-CCCTAATTTACCTGGCACCAG
* * * * *
23802593 TAGAAAAATTTTAGCCTAGCTTGGTTGGCACCAATTAAAGTTTAAG-CCTAGTTTACTTGG
1 T-G-AAAATTTAAGCCCAGCTTAGTTGGCACCAATGAAAGTTTAAGTCC-AATTTACTTGG
23802653 TGCTAGTGAA
Statistics
Matches: 129, Mismatches: 23, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
97 28 0.22
98 27 0.21
99 29 0.22
100 45 0.35
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32
Consensus pattern (97 bp):
TGAAAATTTAAGCCCAGCTTAGTTGGCACCAATGAAAGTTTAAGTCCAATTTACTTGGCACCCAA
TGAAATTTTAACCCTAATTTACCTGGCACCAG
Found at i:23802717 original size:64 final size:64
Alignment explanation
Indices: 23802597--23802740 Score: 139
Period size: 64 Copynumber: 2.2 Consensus size: 64
23802587 CACTTGTAGA
* * * * * ** * * **
23802597 AAAATTTTAGCCTAGCTTGGTTGGCACCAATTAAAGTTTAAGCCTAGTTTACTTGGTGCTAGTG
1 AAAATTTAAGCCTAGCTTCGCTAGCACCAATGAAAGTTTAAAACTAGTTTACTTGGTACCAAAG
*
23802661 AAAATTTAAGCCTAGCTTCGCTAGCACCAGTGAAA-TTTAAAACTCAGTTT-CTTTGGTACCAAA
1 AAAATTTAAGCCTAGCTTCGCTAGCACCAATGAAAGTTTAAAACT-AGTTTAC-TTGGTACCAAA
23802724 G
64 G
23802725 AAAGATTTAAGCCTAG
1 AAA-ATTTAAGCCTAG
23802741 TCATCTTTAT
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
63 8 0.12
64 45 0.69
65 12 0.18
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (64 bp):
AAAATTTAAGCCTAGCTTCGCTAGCACCAATGAAAGTTTAAAACTAGTTTACTTGGTACCAAAG
Found at i:23802858 original size:70 final size:70
Alignment explanation
Indices: 23802784--23803069 Score: 210
Period size: 70 Copynumber: 4.1 Consensus size: 70
23802774 GATTATCTTC
* *
23802784 ATTTTCTT-ACTTGCATCTCGGTCCTAATCAT-TTTTTTTCTTTGACTCGTGGTTCAATCCTGGT
1 ATTTT-TTAACTTGCA-CTCAGTCCTAATCATATTTATTTCTTTGACTCGTGGTTCAATCCTGGT
*
23802847 TATTTTT
64 CATTTTT
* * * * *** *
23802854 ATTTTTTAAATTGTGACTTAGTCCTAATCATCTTTATTT-TTT-ACTTACGGTTCAATCATGGTC
1 ATTTTTTAACTTG-CACTCAGTCCTAATCATATTTATTTCTTTGACTCGTGGTTCAATCCTGGTC
* *
23802917 ATATCT
65 ATTTTT
** ** * * * ** **
23802923 ATTTTTGGACTTGTGGCTTAGTCCCAATCATTTTTA-TTCTTCAACTCGTGGTTCAATCCTAATC
1 ATTTTTTAACTTG-CACTCAGTCCTAATCATATTTATTTCTTTGACTCGTGGTTCAATCCTGGTC
23802987 ATTTTT
65 ATTTTT
* * *
23802993 ATTTTTTGACTTGCAACTCAGTGCC-GATCATATTTATTTC-TTGACTCGTAGTTCAATCCCT-G
1 ATTTTTTAACTTGC-ACTCAGT-CCTAATCATATTTATTTCTTTGACTCGTGGTTCAAT-CCTGG
23803055 TCATTTTT
63 TCATTTTT
23803063 ATTTTTT
1 ATTTTTT
23803070 GATTTGTGGG
Statistics
Matches: 170, Mismatches: 37, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
68 2 0.01
69 54 0.32
70 99 0.58
71 15 0.09
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.50
Consensus pattern (70 bp):
ATTTTTTAACTTGCACTCAGTCCTAATCATATTTATTTCTTTGACTCGTGGTTCAATCCTGGTCA
TTTTT
Found at i:23803064 original size:35 final size:34
Alignment explanation
Indices: 23802950--23803071 Score: 86
Period size: 35 Copynumber: 3.5 Consensus size: 34
23802940 TTAGTCCCAA
* * *
23802950 TCATTTTTA-TTCTTCAACTCGTGGTTCAATCCTAA
1 TCATTTTTATTTCTT-GACTCGTAGTTCAATCCT-G
* * * ** *
23802985 TCATTTTTATTTTTTGACTTGCAACTCAGTGCC-G
1 TCATTTTTATTTCTTGACTCGTAGTTCAAT-CCTG
*
23803019 ATCATATTTATTTCTTGACTCGTAGTTCAATCCCTG
1 -TCATTTTTATTTCTTGACTCGTAGTTCAAT-CCTG
*
23803055 TCATTTTTATTTTTTGA
1 TCATTTTTATTTCTTGA
23803072 TTTGTGGGTC
Statistics
Matches: 64, Mismatches: 19, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
35 57 0.89
36 7 0.11
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (34 bp):
TCATTTTTATTTCTTGACTCGTAGTTCAATCCTG
Found at i:23803084 original size:70 final size:70
Alignment explanation
Indices: 23802922--23803086 Score: 181
Period size: 70 Copynumber: 2.4 Consensus size: 70
23802912 TGGTCATATC
* * * *
23802922 TATTTTTGGACTTGTGGCTTAGTCCCAATCATTTTTATTCTTCAACTCGTGGTTCAATCCTAATC
1 TATTTTTTGACTTGTGGCTCAGTCCCAATCATATTTATTCTTCAACTCGTAGTTCAATCCTAATC
23802987 ATTTT
66 ATTTT
*** * * * *
23802992 TATTTTTTGACTTGCAACTCAGTGCCGATCATATTTATTTCTT-GACTCGTAGTTCAATCCCT-G
1 TATTTTTTGACTTGTGGCTCAGTCCCAATCATATTTA-TTCTTCAACTCGTAGTTCAAT-CCTAA
23803055 TCATTTT
64 TCATTTT
* *
23803062 TATTTTTTGATTTGTGGGTCAGTCC
1 TATTTTTTGACTTGTGGCTCAGTCC
23803087 TAGTTATACT
Statistics
Matches: 76, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
70 68 0.89
71 8 0.11
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (70 bp):
TATTTTTTGACTTGTGGCTCAGTCCCAATCATATTTATTCTTCAACTCGTAGTTCAATCCTAATC
ATTTT
Found at i:23803294 original size:34 final size:34
Alignment explanation
Indices: 23803231--23803344 Score: 97
Period size: 34 Copynumber: 3.3 Consensus size: 34
23803221 TTGGTCCCGC
* ** *
23803231 TCATATTTGTTTCTCAACTCGCGATTCAATCCAG
1 TCATATTTATTTCTTGACTTGCGATTCAATCCAG
* *
23803265 TCAT-TTTCATTTTTTGACTTGCGATTCAAT-TAGG
1 TCATATTT-ATTTCTTGACTTGCGATTCAATCCA-G
* **
23803299 TTATATTTATTTCTTGACTTATGATTCAATCCTAG
1 TCATATTTATTTCTTGACTTGCGATTCAATCC-AG
*
23803334 TCATCTTTATT
1 TCATATTTATT
23803345 CTCCAACTTG
Statistics
Matches: 62, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
33 4 0.06
34 44 0.71
35 13 0.21
36 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.11, T:0.48
Consensus pattern (34 bp):
TCATATTTATTTCTTGACTTGCGATTCAATCCAG
Found at i:23803422 original size:35 final size:35
Alignment explanation
Indices: 23803383--23803494 Score: 107
Period size: 35 Copynumber: 3.2 Consensus size: 35
23803373 ATTCATTTCC
* *
23803383 TGACTTATGGCTCAGTCTCAATCATATTTATTTTT
1 TGACTTATAGCTCAGTCTCGATCATATTTATTTTT
* * * * * *
23803418 TGACTCACAGTTCAATCTCGATCATTTTTATTTTC
1 TGACTTATAGCTCAGTCTCGATCATATTTATTTTT
* * * * *
23803453 TAACTTGTAGCTTAGTCTCGGTCATATTTATTTCT
1 TGACTTATAGCTCAGTCTCGATCATATTTATTTTT
23803488 TGACTTA
1 TGACTTA
23803495 CAATTCAATC
Statistics
Matches: 56, Mismatches: 21, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
35 56 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (35 bp):
TGACTTATAGCTCAGTCTCGATCATATTTATTTTT
Found at i:23803511 original size:35 final size:35
Alignment explanation
Indices: 23803472--23803582 Score: 111
Period size: 35 Copynumber: 3.2 Consensus size: 35
23803462 GCTTAGTCTC
*
23803472 GGTCATATTTATTTCTTGACTTACAATTCAATCCT
1 GGTCATATTTATTTCTTGACTTGCAATTCAATCCT
* *
23803507 GGTCAT-TTTCACTTT-TTGACTGGC-ATCTCAATCTT
1 GGTCATATTT-A-TTTCTTGACTTGCAAT-TCAATCCT
* * *
23803542 GGTTATATTTATTTCTCGACTTGCAATTCAATTCT
1 GGTCATATTTATTTCTTGACTTGCAATTCAATCCT
*
23803577 AGTCAT
1 GGTCAT
23803583 TTTCACCTCT
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
34 8 0.13
35 44 0.73
36 8 0.13
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.46
Consensus pattern (35 bp):
GGTCATATTTATTTCTTGACTTGCAATTCAATCCT
Found at i:23803513 original size:70 final size:69
Alignment explanation
Indices: 23803404--23803622 Score: 188
Period size: 70 Copynumber: 3.1 Consensus size: 69
23803394 TCAGTCTCAA
* * * * * * * * *
23803404 TCATATTTATTTTTTGACTCACAGTTCAATCTCGATCATTTTTA-TTTTCTAACTTGTAGCTTAG
1 TCATATTTATTTCTTGACTTACAATTCAATCT-GGTCATTTTCACTTTT-TAACTGGCAGCTCAA
23803468 TCTCGG
64 TCTCGG
* *
23803474 TCATATTTATTTCTTGACTTACAATTCAATCCTGGTCATTTTCACTTTTTGACTGGCATCTCAAT
1 TCATATTTATTTCTTGACTTACAATTCAAT-CTGGTCATTTTCACTTTTTAACTGGCAGCTCAAT
*
23803539 CTTGG
65 CTCGG
* * * * * * * * **
23803544 TTATATTTATTTCTCGACTTGCAATTCAATTCTAGTCATTTTCACCTCTCAACTTGTGGCTCAAT
1 TCATATTTATTTCTTGACTTACAATTCAA-TCTGGTCATTTTCACTTTTTAACTGGCAGCTCAAT
*
23803609 CTTGG
65 CTCGG
23803614 TCATATTTA
1 TCATATTTA
23803623 ATTATCAACT
Statistics
Matches: 121, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
70 114 0.94
71 7 0.06
ACGTcount: A:0.22, C:0.21, G:0.11, T:0.47
Consensus pattern (69 bp):
TCATATTTATTTCTTGACTTACAATTCAATCTGGTCATTTTCACTTTTTAACTGGCAGCTCAATC
TCGG
Found at i:23804176 original size:34 final size:35
Alignment explanation
Indices: 23804086--23804178 Score: 91
Period size: 35 Copynumber: 2.7 Consensus size: 35
23804076 TTGACTCGTT
* * **
23804086 GTTCAATCCCGATCATTTTTATTTTTCATTTTATG
1 GTTCAATCCCGATCATTTTTATTTTTCATCTCACA
* * * *
23804121 GCTCAATCCC-AGTGATCTTTATTTTTGA-CTCACA
1 GTTCAATCCCGA-TCATTTTTATTTTTCATCTCACA
23804155 GTTCAATCCCGATCATTTTTATTT
1 GTTCAATCCCGATCATTTTTATTT
23804179 CCCTATTTAT
Statistics
Matches: 45, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
34 22 0.49
35 23 0.51
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.47
Consensus pattern (35 bp):
GTTCAATCCCGATCATTTTTATTTTTCATCTCACA
Found at i:23804362 original size:18 final size:18
Alignment explanation
Indices: 23804339--23804375 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
23804329 TTCAACTTAA
23804339 AAAAAAAAAAAACAAAAC
1 AAAAAAAAAAAACAAAAC
*
23804357 AAAAAATAAAAACAAAAC
1 AAAAAAAAAAAACAAAAC
23804375 A
1 A
23804376 CTAAAAGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.86, C:0.11, G:0.00, T:0.03
Consensus pattern (18 bp):
AAAAAAAAAAAACAAAAC
Found at i:23805140 original size:145 final size:143
Alignment explanation
Indices: 23804789--23805141 Score: 341
Period size: 145 Copynumber: 2.4 Consensus size: 143
23804779 TGAGAAATAC
** * * *
23804789 AAAATTATAAAAATA-CCTTTATAGGGTTATTTTTGTAATTTGACC-TTTCTGAGGTTAGATTTT
1 AAAATTACCAAAATATCC-TTATAGGGGTA-TTTTGTAATTTG-CCTTTTC-GAGCTTAGAATTT
* ** * *
23804852 TGTGAAATTTTTTAAATATTAATTTTATAATATTTCAGGATTTTTGGTGTATGAAAAATCACAAT
62 TGTGAAACTTTCCAAATATTAATTTCATAATATTTCAGAATTTTTGGTGTATGAAAAATCACAAT
* *
23804917 ACTACCTTAAAAAATGT
127 AATACCTCAAAAAATGT
* * * * *
23804934 AAAATTACCAAAATATCATTCTAAGGGTATATTTGTAATTTGGCCTTTTCAACCTTAGAATTTTG
1 AAAATTACCAAAATATCCTTATAGGGGTAT-TTTGTAATTT-GCCTTTTCGAGCTTAGAATTTTG
* * * * *** * *
23804999 TGAAACTTTCCAAATGTTAATTTCATAATATTTTATAATTTTTTGTGTATTTGAAATCATAGTAA
64 TGAAACTTTCCAAATATTAATTTCATAATATTTCAGAATTTTTGGTGTATGAAAAATCACAATAA
* *
23805064 TACCTCAAGAAGTGT
129 TACCTCAAAAAATGT
* * *
23805079 GAAATTACCAAAATATCCTTATAGGGGTATTTTCATAATTTAGCCTTTTCGAGCTTGGAATTT
1 AAAATTACCAAAATATCCTTATAGGGGTATTTT-GTAATTT-GCCTTTTCGAGCTTAGAATTT
23805142 CATAAAACTT
Statistics
Matches: 166, Mismatches: 37, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
144 4 0.02
145 156 0.94
146 6 0.04
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.42
Consensus pattern (143 bp):
AAAATTACCAAAATATCCTTATAGGGGTATTTTGTAATTTGCCTTTTCGAGCTTAGAATTTTGTG
AAACTTTCCAAATATTAATTTCATAATATTTCAGAATTTTTGGTGTATGAAAAATCACAATAATA
CCTCAAAAAATGT
Found at i:23805659 original size:2 final size:2
Alignment explanation
Indices: 23805654--23805716 Score: 117
Period size: 2 Copynumber: 31.5 Consensus size: 2
23805644 GAGTAAATTA
*
23805654 AG AG AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
23805696 AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG A
23805717 TGAGCAACAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.49, C:0.02, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23806836 original size:3 final size:3
Alignment explanation
Indices: 23806828--23806887 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
23806818 TTATTTCAAA
23806828 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
23806876 AAT AAT AAT AAT
1 AAT AAT AAT AAT
23806888 TTAGAAATAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:23812187 original size:21 final size:18
Alignment explanation
Indices: 23812151--23812189 Score: 51
Period size: 21 Copynumber: 2.0 Consensus size: 18
23812141 AGCTGAGCCG
23812151 TTTTTTTTTTTTTTTTGC
1 TTTTTTTTTTTTTTTTGC
23812169 TTTTTATTTATTTATTTTTGC
1 TTTTT-TTT-TTT-TTTTTGC
23812190 ATGATTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 3 0.17
20 3 0.17
21 7 0.39
ACGTcount: A:0.08, C:0.05, G:0.05, T:0.82
Consensus pattern (18 bp):
TTTTTTTTTTTTTTTTGC
Found at i:23817964 original size:41 final size:41
Alignment explanation
Indices: 23817907--23818792 Score: 737
Period size: 40 Copynumber: 21.9 Consensus size: 41
23817897 TGTCGATGAG
* * * * *
23817907 CTTTTAATTTTAAAAGTTGTTGTGTCTATGTTTAGAAGAGC
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGC
23817948 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAG-AGAAGC
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAG-AGC
* * * *
23817989 CTTTTATTTTTTAAAGTTGTTGTA-TCTCTATTTAGAGGAGC
1 CTTTTATTTTTCAAAGTTGTTG-AGCCTCTGTTTAGAAGAGC
* * *
23818030 C-TTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGAGGAGC
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGC
* * * *
23818070 C-TTTATTTTTCAAAATTGTTAAGCCTTTGTTTAGAGGAG-
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGC
* * *
23818109 CTTTTATTTTTTAAAGTTATT-ATGCCTCTATTTAGAAGAGC
1 CTTTTATTTTTCAAAGTTGTTGA-GCCTCTGTTTAGAAGAGC
* * *
23818150 C-ATTATTTTTCAAAGTTATT-ATGCCTCTGTTTAGAGGAGC
1 CTTTTATTTTTCAAAGTTGTTGA-GCCTCTGTTTAGAAGAGC
* * *
23818190 C-TTTATTCTTCAAAGTTGTTAAGCCTCTATTTA-AAGGAG-
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA-GAGC
* * *
23818229 CTTTTA-TTTTCTAAAGTTGTT-ATGCCTCTATTTAGACGAGA
1 CTTTTATTTTTC-AAAGTTGTTGA-GCCTCTGTTTAGAAGAGC
* * * * *
23818270 CTTTTA-TTTTCTAAAATTATTGTGCCTCTATTTAGAGGAG-
1 CTTTTATTTTTC-AAAGTTGTTGAGCCTCTGTTTAGAAGAGC
* * *
23818310 CTTTTATCTTTCTAAAGTTGTTGAGCCTTTGTTTAGAAAAGC
1 CTTTTATTTTTC-AAAGTTGTTGAGCCTCTGTTTAGAAGAGC
* * * *
23818352 CTTTTATTTTTTAAAGTCGTTGAGTCTTTGTTTAGATA-AGC
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGA-AGAGC
* * * *
23818393 CTTTTATTTTTTAAAATTGTTGAACCTTTGTTTA-AAGGAGC
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA-GAGC
* * * * *
23818434 CTTTTA-TTTTCAAAGTCGTTGAGCATTTGCTTATAAGAGC
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGC
* * *
23818474 CTTTTATTTTTCAAAGTCGTTAAGCCTCTGTTTAGAGGAGC
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGC
** * *
23818515 C-TTTATTTTTCAAAGTCATTGAGGCTCTGTTTAGAGGAGC
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGC
* * *
23818555 CTTTTA-TTTTCTAAAGTTGTT-ATGCTTTTGTTTAGCAGAGC
1 CTTTTATTTTTC-AAAGTTGTTGA-GCCTCTGTTTAGAAGAGC
* * *
23818596 C-TTTATCTCTCCAAAGTTGTTGAGCCTTTGTTTA-AAGGAG-
1 CTTTTAT-TTTTCAAAGTTGTTGAGCCTCTGTTTAGAA-GAGC
* * * * *
23818636 CTTTTATTTTTCAAAGTCGTTGAGCTTTTGCTTAGAGGAGC
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGC
** ** *
23818677 CTTTTATTTTTCAAAGTCATTGAGCCTCTAATTAGATGAGC
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGC
* **
23818718 C-TTTATTTTTCAAAGTCGTTGAGCCTCTAATTA-AAGGAGC
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA-GAGC
** *
23818758 C-TTTATTTTTCAAAGTCATTGAGCTTCTGTTTAGA
1 CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGA
23818793 GAAGCCATAT
Statistics
Matches: 713, Mismatches: 98, Indels: 68
0.81 0.11 0.08
Matches are distributed among these distances:
39 11 0.02
40 369 0.52
41 316 0.44
42 17 0.02
ACGTcount: A:0.24, C:0.14, G:0.17, T:0.45
Consensus pattern (41 bp):
CTTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGC
Found at i:23818056 original size:81 final size:81
Alignment explanation
Indices: 23817907--23818812 Score: 708
Period size: 81 Copynumber: 11.1 Consensus size: 81
23817897 TGTCGATGAG
* * ** * *
23817907 CTTTTAATTTTAAAAGTTGTTGTGTCTATGTTTAGAAGAGCCTTTTATTTTTCAAAGTTGTTGAG
1 CTTTTATTTTTTAAAGTTGTTGTACCTCTGTTTAGAGGAGCC-TTTATTTTTCAAAGTTGTTGAG
*
23817972 CCTCTGTTTAGAGAAGC
65 CCTCTGTTTAGAGGAGC
* * *
23817989 CTTTTATTTTTTAAAGTTGTTGTATCTCTATTTAGAGGAGCCTTTATTTTTCAAAGTTGTTGTGC
1 CTTTTATTTTTTAAAGTTGTTGTACCTCTGTTTAGAGGAGCCTTTATTTTTCAAAGTTGTTGAGC
*
23818054 CTCTATTTAGAGGAGC
66 CTCTGTTTAGAGGAGC
* * * * * * *
23818070 C-TTTATTTTTCAAAATTGTT-AAGCCTTTGTTTAGAGGAGCTTTTATTTTTTAAAGTTATT-AT
1 CTTTTATTTTTTAAAGTTGTTGTA-CCTCTGTTTAGAGGAGCCTTTATTTTTCAAAGTTGTTGA-
* *
23818132 GCCTCTATTTAGAAGAGC
64 GCCTCTGTTTAGAGGAGC
* * * * * * *
23818150 C-ATTATTTTTCAAAGTTATTATGCCTCTGTTTAGAGGAGCCTTTATTCTTCAAAGTTGTTAAGC
1 CTTTTATTTTTTAAAGTTGTTGTACCTCTGTTTAGAGGAGCCTTTATTTTTCAAAGTTGTTGAGC
* *
23818214 CTCTATTTAAAGGAG-
66 CTCTGTTTAGAGGAGC
* * * * * * * * *
23818229 CTTTTATTTTCTAAAGTTGTTATGCCTCTATTTAGACGAGACTTT-TATTTTCTAAAATTATTGT
1 CTTTTATTTTTTAAAGTTGTTGTACCTCTGTTTAGAGGAGCCTTTAT-TTTTC-AAAGTTGTTGA
*
23818293 GCCTCTATTTAGAGGAG-
64 GCCTCTGTTTAGAGGAGC
* * ** * *
23818310 CTTTTATCTTTCTAAAGTTGTTG-AGCCTTTGTTTAGAAAAGCCTTTTATTTTTTAAAGTCGTTG
1 CTTTTAT-TTTTTAAAGTTGTTGTA-CCTCTGTTTAGAGGAGCC-TTTATTTTTCAAAGTTGTTG
* * **
23818374 AGTCTTTGTTTAGATAAGC
63 AGCCTCTGTTTAGAGGAGC
* * * * *
23818393 CTTTTATTTTTTAAAATTGTTGAACCTTTGTTTAAAGGAGCCTTT-TATTTTCAAAGTCGTTGAG
1 CTTTTATTTTTTAAAGTTGTTGTACCTCTGTTTAGAGGAGCCTTTAT-TTTTCAAAGTTGTTGAG
* * * * *
23818457 CATTTGCTTATAAGAGC
65 CCTCTGTTTAGAGGAGC
* * * **
23818474 CTTTTATTTTTCAAAGTCGTT-AAGCCTCTGTTTAGAGGAGCCTTTATTTTTCAAAGTCATTGAG
1 CTTTTATTTTTTAAAGTTGTTGTA-CCTCTGTTTAGAGGAGCCTTTATTTTTCAAAGTTGTTGAG
*
23818538 GCTCTGTTTAGAGGAGC
65 CCTCTGTTTAGAGGAGC
* * * * * * *
23818555 CTTTTATTTTCTAAAGTTGTTATGCTTTTGTTTAGCA-GAGCCTTTATCTCTCCAAAGTTGTTGA
1 CTTTTATTTTTTAAAGTTGTTGTACCTCTGTTTAG-AGGAGCCTTTAT-TTTTCAAAGTTGTTGA
* *
23818619 GCCTTTGTTTAAAGGAG-
64 GCCTCTGTTTAGAGGAGC
* * * * * **
23818636 CTTTTATTTTTCAAAGTCGTTG-AGCTTTTGCTTAGAGGAGCCTTTTATTTTTCAAAGTCATTGA
1 CTTTTATTTTTTAAAGTTGTTGTA-CCTCTGTTTAGAGGAGCC-TTTATTTTTCAAAGTTGTTGA
** *
23818700 GCCTCTAATTAGATGAGC
64 GCCTCTGTTTAGAGGAGC
* * ** * **
23818718 C-TTTATTTTTCAAAGTCGTTG-AGCCTCTAATTAAAGGAGCCTTTATTTTTCAAAGTCATTGAG
1 CTTTTATTTTTTAAAGTTGTTGTA-CCTCTGTTTAGAGGAGCCTTTATTTTTCAAAGTTGTTGAG
* *
23818781 CTTCTGTTTAGAGAAGC
65 CCTCTGTTTAGAGGAGC
23818798 CATATTTATTATTTT
1 C-T-TTTATT-TTTT
23818813 CAAAAGTTAT
Statistics
Matches: 671, Mismatches: 126, Indels: 52
0.79 0.15 0.06
Matches are distributed among these distances:
79 3 0.00
80 208 0.31
81 291 0.43
82 144 0.21
83 21 0.03
84 4 0.01
ACGTcount: A:0.24, C:0.14, G:0.17, T:0.45
Consensus pattern (81 bp):
CTTTTATTTTTTAAAGTTGTTGTACCTCTGTTTAGAGGAGCCTTTATTTTTCAAAGTTGTTGAGC
CTCTGTTTAGAGGAGC
Found at i:23818910 original size:19 final size:18
Alignment explanation
Indices: 23818877--23818912 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
23818867 CATTTGGTTT
*
23818877 TAAAAAAATGAAAAAAAA
1 TAAAAAAAAGAAAAAAAA
23818895 TAAAAGAAAAGAAAAAAA
1 TAAAA-AAAAGAAAAAAA
23818913 GTGAATATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.83, C:0.00, G:0.08, T:0.08
Consensus pattern (18 bp):
TAAAAAAAAGAAAAAAAA
Found at i:23850224 original size:28 final size:28
Alignment explanation
Indices: 23850184--23850288 Score: 174
Period size: 28 Copynumber: 3.8 Consensus size: 28
23850174 CCATAAACAA
*
23850184 AAACCACTAACACACAACTAACTTCCAT
1 AAACCACTAACACACATCTAACTTCCAT
* *
23850212 AAACCATTAACACACATCTAACATCCAT
1 AAACCACTAACACACATCTAACTTCCAT
*
23850240 AAACCACTAACAAACATCTAACTTCCAT
1 AAACCACTAACACACATCTAACTTCCAT
23850268 AAACCACTAACACACATCTAA
1 AAACCACTAACACACATCTAA
23850289 TTGTTCATCA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 70 1.00
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (28 bp):
AAACCACTAACACACATCTAACTTCCAT
Found at i:23857031 original size:142 final size:143
Alignment explanation
Indices: 23856775--23857133 Score: 508
Period size: 142 Copynumber: 2.5 Consensus size: 143
23856765 CTCCAATTCG
* *
23856775 AAATAAACTGCTAAACTTGGATTATATGAATTTGGAAATTTAACAAAAGTTTAAATTGTTTGACT
1 AAATAAACTGCTAAACTTGGACTATATGAATTTGGAAATTTAACAAAAGTTTAAATTGTTTGACC
* *
23856840 ATCTACATATGCAAATAATAGACAACTAATATTGTGGGGGTGCACAGTGAGTGAGGCCCGTGGAA
66 ATCTACATATACAAATAATAGACAACTAATATTGTGGGGGTGCAAAGTGAGTGAGGCCCGTGGAA
23856905 GTTG-CCCAA-AC
131 GTTGCCCCAACAC
* * *
23856916 AAATAAACTACTAAAGTTGGACTATATGAATTTGGAAATTTTGACAAAAGTTTAAATTGTTTGAC
1 AAATAAACTGCTAAACTTGGACTATATGAATTTGGAAA-TTTAACAAAAGTTTAAATTGTTTGAC
* * * * * *
23856981 CATCTACATCTACAAATAATATATAACGT-ATCTTGTGGGGGTGCAAAGTGAGTGAGGTCTGTGG
65 CATCTACATATACAAATAATAGACAAC-TAATATTGTGGGGGTGCAAAGTGAGTGAGGCCCGTGG
*
23857045 AAGTTGCCCCAACCCC
129 AAGTTGCCCCAA-CAC
* * *
23857061 AAATAAACTGCTAAACTTGCACTCTATGAATTTGGCAATTTAACAAAAGTTTAAATTGTTTGACC
1 AAATAAACTGCTAAACTTGGACTATATGAATTTGGAAATTTAACAAAAGTTTAAATTGTTTGACC
*
23857126 ATTTACAT
66 ATCTACAT
23857134 TTGCACTGAG
Statistics
Matches: 192, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
141 35 0.18
142 84 0.44
143 6 0.03
144 33 0.17
145 34 0.18
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (143 bp):
AAATAAACTGCTAAACTTGGACTATATGAATTTGGAAATTTAACAAAAGTTTAAATTGTTTGACC
ATCTACATATACAAATAATAGACAACTAATATTGTGGGGGTGCAAAGTGAGTGAGGCCCGTGGAA
GTTGCCCCAACAC
Found at i:23861518 original size:144 final size:142
Alignment explanation
Indices: 23860991--23861544 Score: 606
Period size: 147 Copynumber: 3.8 Consensus size: 142
23860981 CACCCTTGAG
* * * ** ** * * **
23860991 AAGTATAAAATTCCAAAAATACCCCTTATAAGGGTATTTTTGTAATTTAACCTTCTAGAGCTCAA
1 AAGTATGAAATTAC-AAAATA-CCCTTATAGGGGTATTTTCATAATTTGGCTTTCTCGAGCTTGA
* * *
23861056 ATTTTTTTGAAACTTTTCAAATCTTAATTTCATAATTATTTCATGATTTTTGGTTCATTTAAAAT
64 A-TTTTGTGAAACTTTTCAAATCTTAATTTCATAA-TATTTCATGATTTTT-TTTCATTTGAAAT
23861121 CACAGCAATACCCCAAA
126 CACAGCAATACCCCAAA
* * *
23861138 AAGTATGAAATTACTAAAATACCCTTATAAGGGTATTTTCATAATTTGGCTTTTTTCAAGCTTGA
1 AAGTATGAAATTAC-AAAATACCCTTATAGGGGTATTTTCATAATTTGGC-TTTCTCGAGCTTG-
*
23861203 AATTTTGTGAAACTTTTCAGATCTTAATTTCATAATATTTCATGATTTTTTTTGCATTTGGAAAT
63 AATTTTGTGAAACTTTTCAAATCTTAATTTCATAATATTTCATGATTTTTTTT-CATTT-GAAAT
* * *
23861268 CACAACAGTACTCCAAA
126 CACAGCAATACCCCAAA
* * * * *
23861285 AATTATGAAAATGACCAAAATGCCCTTATAGGGGTATTTTCATAATTTGGCCTTC-CTGAGCTCA
1 AAGTATG-AAATTA-CAAAATACCCTTATAGGGGTATTTTCATAATTTGGCTTTCTC-GAGCT-T
* *
23861349 GAATTTTGTGAAACTTTTCAGATCTTAATTTCATAATATTTCATGATTTTTTTTTATTTGAAATC
62 GAATTTTGTGAAACTTTTCAAATCTTAATTTCATAATATTTCATGATTTTTTTTCATTTGAAATC
* *
23861414 ATAGCAATACCCCCAA
127 ACAGCAATACCCCAAA
* * *
23861430 AAGTGTGAAATTATCAAAATACTCTTATAGGGGTATTTTCATAAATTGGCTTTCTCGAGCTTGAA
1 AAGTATGAAATTA-CAAAATACCCTTATAGGGGTATTTTCATAATTTGGCTTTCTCGAGCTTGAA
* * * * * *
23861495 TTTTCATAAAACTTTTTAAATCTTAATTTTATAACATTTCATGACTTTTT
65 TTTT-GTGAAACTTTTCAAATCTTAATTTCATAATATTTCATGATTTTTT
23861545 GTACTTTAAA
Statistics
Matches: 347, Mismatches: 50, Indels: 23
0.83 0.12 0.05
Matches are distributed among these distances:
143 7 0.02
144 84 0.24
145 25 0.07
146 50 0.14
147 139 0.40
148 41 0.12
149 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (142 bp):
AAGTATGAAATTACAAAATACCCTTATAGGGGTATTTTCATAATTTGGCTTTCTCGAGCTTGAAT
TTTGTGAAACTTTTCAAATCTTAATTTCATAATATTTCATGATTTTTTTTCATTTGAAATCACAG
CAATACCCCAAA
Found at i:23864066 original size:3 final size:3
Alignment explanation
Indices: 23864060--23864109 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
23864050 TAAAAAAAGG
* * * * *
23864060 AAT AAT AAT AAT AGT AAT AAT AAA AAT AAA AAA AAT AAT AAT CAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
23864108 AA
1 AA
23864110 AGAAAAGCAA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:23864098 original size:21 final size:21
Alignment explanation
Indices: 23864074--23864115 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23864064 ATAATAATAG
23864074 TAATAATAAAAATAAAAAAAA
1 TAATAATAAAAATAAAAAAAA
* * *
23864095 TAATAATCATAATAAAGAAAA
1 TAATAATAAAAATAAAAAAAA
23864116 GCAAGAAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (21 bp):
TAATAATAAAAATAAAAAAAA
Found at i:23864931 original size:19 final size:19
Alignment explanation
Indices: 23864907--23864943 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
23864897 TGTCGAAGAC
23864907 TTTGAAGATATTTCTTTAA
1 TTTGAAGATATTTCTTTAA
*
23864926 TTTGAAGATTTTTCTTTA
1 TTTGAAGATATTTCTTTA
23864944 TAGTCCTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.57
Consensus pattern (19 bp):
TTTGAAGATATTTCTTTAA
Found at i:23866080 original size:16 final size:15
Alignment explanation
Indices: 23866053--23866104 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
23866043 CGACAAGATG
23866053 AAAAAA-AAAAAGAC
1 AAAAAACAAAAAGAC
*
23866067 AAAAAGACAAAAAGGAG
1 AAAAA-ACAAAAA-GAC
* *
23866084 AAAAAAGAAAAAGAT
1 AAAAAACAAAAAGAC
23866099 AAAAAA
1 AAAAAA
23866105 AAAGGTGCTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
14 5 0.16
15 9 0.28
16 11 0.34
17 7 0.22
ACGTcount: A:0.81, C:0.04, G:0.13, T:0.02
Consensus pattern (15 bp):
AAAAAACAAAAAGAC
Found at i:23866299 original size:12 final size:12
Alignment explanation
Indices: 23866284--23866312 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
23866274 AAAAGAGATG
23866284 AAAAAAG-GCAA
1 AAAAAAGAGCAA
23866295 AAAAAAGAGCAA
1 AAAAAAGAGCAA
23866307 AAAAAA
1 AAAAAA
23866313 AAATTATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAAAAGAGCAA
Found at i:23868397 original size:6 final size:6
Alignment explanation
Indices: 23868386--23868412 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
23868376 AGAGGCATGT
23868386 AAACAA AAACAA AAACAA AAACAA AAA
1 AAACAA AAACAA AAACAA AAACAA AAA
23868413 AAAGAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (6 bp):
AAACAA
Found at i:23869863 original size:33 final size:32
Alignment explanation
Indices: 23869774--23870111 Score: 141
Period size: 32 Copynumber: 10.2 Consensus size: 32
23869764 AGCATGCAAA
*
23869774 CCCAGCTTAGC-TGGCACCTAATAAAAATTTTAAG
1 CCCAGCTTA-CTTGGCA-CTAATGAAAA-TTTAAG
* *
23869808 CCTAGTTTTA-TCTGGCACTAATGAAAATTTAAG
1 CCCAG-CTTACT-TGGCACTAATGAAAATTTAAG
*
23869841 CCCAGGTTACTTGGCACTTAATGAAAAGTTTAAG
1 CCCAGCTTACTTGGCAC-TAATGAAAA-TTTAAG
* * * * * *
23869875 TCCAACTTAGC-TGGCACCCATTTAAATTTTAAG
1 CCCAGCTTA-CTTGGCA-CTAATGAAAATTTAAG
* * * * *
23869908 CCTAG-TT-CATCTGGCATTAGTGAAAGTTGAAG
1 CCCAGCTTAC-T-TGGCACTAATGAAAATTTAAG
*
23869940 CCCAGCTTAGTTGGCACTAATGAAAATTTAAG
1 CCCAGCTTACTTGGCACTAATGAAAATTTAAG
* * * * * *
23869972 CCTA-ATATACTTAGCACCTGATGATGATTTTAAG
1 CCCAGCT-TACTTGGCA-CTAATGA-AAATTTAAG
* * * **
23870006 CTCAGTTTACCTGGCACTTGTAGAAAAGTTTAAG
1 CCCAGCTTACTTGGCACTAAT-GAAAA-TTTAAG
* * * *
23870040 CCTAGCTTGGC-TGGCACCAATGAAAGTTTAAG
1 CCCAGCTT-ACTTGGCACTAATGAAAATTTAAG
* * * * *
23870072 CCTAGTTTACTAGGCACCAGTGAAAATTTAAG
1 CCCAGCTTACTTGGCACTAATGAAAATTTAAG
*
23870104 CCTAGCTT
1 CCCAGCTT
23870112 GGCTAGCACC
Statistics
Matches: 226, Mismatches: 57, Indels: 44
0.69 0.17 0.13
Matches are distributed among these distances:
30 1 0.00
31 2 0.01
32 90 0.40
33 50 0.22
34 71 0.31
35 12 0.05
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (32 bp):
CCCAGCTTACTTGGCACTAATGAAAATTTAAG
Found at i:23869954 original size:99 final size:99
Alignment explanation
Indices: 23869779--23869971 Score: 264
Period size: 99 Copynumber: 1.9 Consensus size: 99
23869769 GCAAACCCAG
* *
23869779 CTTAGCTGGCACCTAATAAAAATTTTAAGCCTAGTTTTATCTGGCACTAATGAAAATTTAAGCCC
1 CTTAGCTGGCACCTAATAAAAATTTTAAGCCTAGTTTCATCTGGCACTAATGAAAATTGAAGCCC
*
23869844 AGGTTACTTGGCACTTAATGAAAAGTTTAAGTCCAA
66 AGCTTACTTGGCAC-TAATGAAAA-TTTAAGTCCAA
* ** * * *
23869880 CTTAGCTGGCACC-CATTTAAATTTTAAGCCTAG-TTCATCTGGCATTAGTGAAAGTTGAAGCCC
1 CTTAGCTGGCACCTAATAAAAATTTTAAGCCTAGTTTCATCTGGCACTAATGAAAATTGAAGCCC
*
23869943 AGCTTAGTTGGCACTAATGAAAATTTAAG
66 AGCTTACTTGGCACTAATGAAAATTTAAG
23869972 CCTAATATAC
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
97 6 0.07
98 9 0.11
99 37 0.45
100 17 0.21
101 13 0.16
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (99 bp):
CTTAGCTGGCACCTAATAAAAATTTTAAGCCTAGTTTCATCTGGCACTAATGAAAATTGAAGCCC
AGCTTACTTGGCACTAATGAAAATTTAAGTCCAA
Found at i:23870071 original size:32 final size:32
Alignment explanation
Indices: 23870030--23870134 Score: 140
Period size: 32 Copynumber: 3.3 Consensus size: 32
23870020 CACTTGTAGA
*
23870030 AAAGTTTAAGCCTAGCTTGGCTGGCACCAATG
1 AAAGTTTAAGCCTAGCTTGGCTGGCACCAGTG
**
23870062 AAAGTTTAAGCCTAG-TTTACTAGGCACCAGTG
1 AAAGTTTAAGCCTAGCTTGGCT-GGCACCAGTG
* *
23870094 AAAATTTAAGCCTAGCTTGGCTAGCACCAGTG
1 AAAGTTTAAGCCTAGCTTGGCTGGCACCAGTG
*
23870126 AAATTTTAA
1 AAAGTTTAA
23870135 ACTCAGTTTC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
31 4 0.06
32 55 0.87
33 4 0.06
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (32 bp):
AAAGTTTAAGCCTAGCTTGGCTGGCACCAGTG
Found at i:23870143 original size:64 final size:66
Alignment explanation
Indices: 23869998--23870143 Score: 192
Period size: 64 Copynumber: 2.2 Consensus size: 66
23869988 CCTGATGATG
** *
23869998 ATTTTAAGCTCAGTTTACCTGGCACTTGTAGAAAAGTTTAAGCCTAGCTTGGCTGGCACCAATGA
1 ATTTTAAGCTCAGTTTACCTGGCACCAGTAGAAAAGTTTAAGCCTAGCTTGGCTAGCACCAATGA
23870063 A
66 A
* *
23870064 AGTTTAAGC-CTAGTTTA-CTAGGCACCAGT-GAAAA-TTTAAGCCTAGCTTGGCTAGCACCAGT
1 ATTTTAAGCTC-AGTTTACCT-GGCACCAGTAGAAAAGTTTAAGCCTAGCTTGGCTAGCACCAAT
23870125 GAA
64 GAA
*
23870128 ATTTTAAACTCAGTTT
1 ATTTTAAGCTCAGTTT
23870144 CTTTGGTACC
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
64 40 0.57
65 9 0.13
66 21 0.30
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (66 bp):
ATTTTAAGCTCAGTTTACCTGGCACCAGTAGAAAAGTTTAAGCCTAGCTTGGCTAGCACCAATGA
A
Found at i:23870282 original size:70 final size:68
Alignment explanation
Indices: 23870169--23870412 Score: 174
Period size: 70 Copynumber: 3.5 Consensus size: 68
23870159 AAGATTTAAG
* * * *
23870169 CCTAGTCATCTTTATTTTTTGATTTGCGGTTCAAT-TTCGATTATCTTCATTTTTTAACTTGTGG
1 CCTAGTCATCTTTATTCTTTGACTCGTGGTTCAATCTT-GATTATCTT-ATTTTTTAACTTGTGG
23870233 CTCGGT
64 CTC-GT
* * * * ** *
23870239 CCTAGTCATTTTTATTCTTTAACTCGTGGTTCAATCTTGATTATTTTTATTTTTTAAATTACGAC
1 CCTAGTCATCTTTATTCTTTGACTCGTGGTTCAATCTTGATTA-TCTTATTTTTTAACTTGTGGC
*
23870304 TCAT
65 TCGT
* * * **
23870308 CCCT-GTCATCTTTATT-TTTTACTCATGGTTCAATCCT-AGTCATATC-TATTTTTGGACTTGT
1 -CCTAGTCATCTTTATTCTTTGACTCGTGGTTCAATCTTGA-T--TATCTTATTTTTTAACTTGT
* *
23870369 AGCTTAGT
62 GGC-TCGT
* * *
23870377 CCCAATCATTTTTATTCTTTGACTCGTGGTTCAATC
1 CCTAGTCATCTTTATTCTTTGACTCGTGGTTCAATC
23870413 CTAATCATTT
Statistics
Matches: 134, Mismatches: 31, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
67 1 0.01
68 32 0.24
69 25 0.19
70 71 0.53
71 5 0.04
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.50
Consensus pattern (68 bp):
CCTAGTCATCTTTATTCTTTGACTCGTGGTTCAATCTTGATTATCTTATTTTTTAACTTGTGGCT
CGT
Found at i:23870426 original size:35 final size:34
Alignment explanation
Indices: 23870313--23870434 Score: 120
Period size: 35 Copynumber: 3.5 Consensus size: 34
23870303 CTCATCCCTG
* * * *
23870313 TCATCTTTATTTTTTACTCATGGTTCAATCCTAG
1 TCATTTTTATTTTTGACTCGTGGTTCAATCCTAA
* * * * * *
23870347 TCATATCTATTTTTGGACTTGTAGCTT-AGTCCCAA
1 TCATTTTTATTTTT-GACTCGT-GGTTCAATCCTAA
23870382 TCATTTTTATTCTTTGACTCGTGGTTCAATCCTAA
1 TCATTTTTATT-TTTGACTCGTGGTTCAATCCTAA
23870417 TCATTTTTATTTTTGACT
1 TCATTTTTATTTTTGACT
23870435 TGCAGCTCAG
Statistics
Matches: 69, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
34 22 0.32
35 41 0.59
36 6 0.09
ACGTcount: A:0.20, C:0.19, G:0.11, T:0.50
Consensus pattern (34 bp):
TCATTTTTATTTTTGACTCGTGGTTCAATCCTAA
Found at i:23870454 original size:34 final size:34
Alignment explanation
Indices: 23870337--23870499 Score: 112
Period size: 35 Copynumber: 4.7 Consensus size: 34
23870327 TACTCATGGT
* * * * *
23870337 TCAATCCTAGTCATATCTATTTTTGGACTTGTAGC
1 TCAATCCTAATCATTTTTATTTTT-GACTCGCAGC
* * * ** *
23870372 TTAGTCCCAATCATTTTTATTCTTTGACTCGTGGT
1 TCAATCCTAATCATTTTTATT-TTTGACTCGCAGC
*
23870407 TCAATCCTAATCATTTTTATTTTTGACTTGCAGC
1 TCAATCCTAATCATTTTTATTTTTGACTCGCAGC
* * * * * *
23870441 TCAGTCCTGATCATATTTATTTCTCGACTCACAGT
1 TCAATCCTAATCATTTTTATTT-TTGACTCGCAGC
*
23870476 TCAATCCCT-GTCATTTTTATTTTT
1 TCAAT-CCTAATCATTTTTATTTTT
23870500 TGATTTATGG
Statistics
Matches: 98, Mismatches: 27, Indels: 7
0.74 0.20 0.05
Matches are distributed among these distances:
34 29 0.30
35 63 0.64
36 6 0.06
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (34 bp):
TCAATCCTAATCATTTTTATTTTTGACTCGCAGC
Found at i:23870470 original size:69 final size:69
Alignment explanation
Indices: 23870309--23870499 Score: 192
Period size: 69 Copynumber: 2.8 Consensus size: 69
23870299 ACGACTCATC
* * * * * *
23870309 CCTG-TCATCTTTATTT-TTTACTCATGGTTCAATCCTAGTCATATCTATTTTTGGACTTGTAGC
1 CCTGATCATATTTATTTCTTGACTCATGGTTCAATCCTAATCATTTTTATTTTT-GACTTGCAGC
*
23870372 TTAGT
65 TCAGT
** * *
23870377 CCCAATCATTTTTA-TTCTTTGACTCGTGGTTCAATCCTAATCATTTTTATTTTTGACTTGCAGC
1 CCTGATCATATTTATTTC-TTGACTCATGGTTCAATCCTAATCATTTTTATTTTTGACTTGCAGC
23870441 TCAGT
65 TCAGT
* ** *
23870446 CCTGATCATATTTATTTCTCGACTCACAGTTCAATCCCT-GTCATTTTTATTTTT
1 CCTGATCATATTTATTTCTTGACTCATGGTTCAAT-CCTAATCATTTTTATTTTT
23870500 TGATTTATGG
Statistics
Matches: 100, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
68 4 0.04
69 59 0.59
70 37 0.37
ACGTcount: A:0.20, C:0.21, G:0.11, T:0.48
Consensus pattern (69 bp):
CCTGATCATATTTATTTCTTGACTCATGGTTCAATCCTAATCATTTTTATTTTTGACTTGCAGCT
CAGT
Found at i:23870863 original size:35 final size:35
Alignment explanation
Indices: 23870813--23870915 Score: 120
Period size: 35 Copynumber: 2.9 Consensus size: 35
23870803 ATTCATTTCC
**
23870813 TGACTTGTGGCTCAATCCT-ATTCATATTTATTTTT
1 TGACTTGCAGCTCAATCCTCA-TCATATTTATTTTT
** * *
23870848 TGACTTGCATTTCAATCCTGATCATTTTTATTTTT
1 TGACTTGCAGCTCAATCCTCATCATATTTATTTTT
23870883 TGACTTGCAGCTCAAT-CTCAGTCATATTTATTT
1 TGACTTGCAGCTCAATCCTCA-TCATATTTATTT
23870916 CTCAACTCAT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
34 3 0.05
35 53 0.93
36 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.11, T:0.50
Consensus pattern (35 bp):
TGACTTGCAGCTCAATCCTCATCATATTTATTTTT
Found at i:23870887 original size:70 final size:69
Alignment explanation
Indices: 23870813--23871132 Score: 206
Period size: 70 Copynumber: 4.6 Consensus size: 69
23870803 ATTCATTTCC
* **
23870813 TGACTTGTGGCTCAATCCTATTCATATTTATTTTTTGACTTGCATTTCAATCCTGATCATTTTTA
1 TGACTTGTGGCTCAATCCTATTCATATTTATTTCTCAACTTGCATTTCAAT-CTGATCATTTTTA
*
23870878 TTTTT
65 CTTTT
** * * *
23870883 TGACTTGCAGCTCAAT-CTCAGTCATATTTATTTCTCAAC-T-CATGGTTCAATTTCGGTCATTT
1 TGACTTGTGGCTCAATCCT-ATTCATATTTATTTCTCAACTTGCAT--TTCAATCT-GATCATTT
* *
23870945 TCACATTT
62 TTACTTTT
* *** * * * * *
23870953 TGACTGGCATCTAAATCCTGGTT-ATATTTATTTCTCGACTTGCAATTCAATCTTAGTCATTTTT
1 TGACTTGTGGCTCAATCCT-ATTCATATTTATTTCTCAACTTGCATTTCAATCTGA-TCATTTTT
*
23871017 ACTTCT
64 ACTTTT
* * ** *
23871023 CGACTTGTGGCTTAATCCTACTT-ATATTTATTTCTCAACTTGTGGTTT-AATCCTGATCATCTT
1 TGACTTGTGGCTCAATCCTA-TTCATATTTATTTCTCAACTTG-CATTTCAAT-CTGATCATTTT
23871086 TA-TTCTT
63 TACTT-TT
* * * *
23871093 TGACTTATGGCTCAGTCCCGA-TCATATTTATTTCTTAACT
1 TGACTTGTGGCTCAAT-CCTATTCATATTTATTTCTCAACT
23871133 AGTGATTCAA
Statistics
Matches: 191, Mismatches: 45, Indels: 28
0.72 0.17 0.11
Matches are distributed among these distances:
68 3 0.02
69 7 0.04
70 167 0.87
71 12 0.06
72 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.11, T:0.47
Consensus pattern (69 bp):
TGACTTGTGGCTCAATCCTATTCATATTTATTTCTCAACTTGCATTTCAATCTGATCATTTTTAC
TTTT
Found at i:23871058 original size:35 final size:35
Alignment explanation
Indices: 23870974--23871076 Score: 100
Period size: 35 Copynumber: 2.9 Consensus size: 35
23870964 TAAATCCTGG
** * *
23870974 TTATATTTATTTCTCGACTTG-CAATTCAATCTTAG
1 TTATATTTATTTCTCGACTTGTGGATT-AATCCTAC
* * * *
23871009 TCATTTTTACTTCTCGACTTGTGGCTTAATCCTAC
1 TTATATTTATTTCTCGACTTGTGGATTAATCCTAC
* *
23871044 TTATATTTATTTCTCAACTTGTGGTTTAATCCT
1 TTATATTTATTTCTCGACTTGTGGATTAATCCT
23871077 GATCATCTTT
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
35 52 0.96
36 2 0.04
ACGTcount: A:0.21, C:0.19, G:0.10, T:0.50
Consensus pattern (35 bp):
TTATATTTATTTCTCGACTTGTGGATTAATCCTAC
Found at i:23871088 original size:35 final size:35
Alignment explanation
Indices: 23871009--23871089 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
23870999 TCAATCTTAG
* * *
23871009 TCATTTTTACTTCTCGACTTGTGGCTTAATCCTAC
1 TCATATTTATTTCTCAACTTGTGGCTTAATCCTAC
* *
23871044 TTATATTTATTTCTCAACTTGTGGTTTAATCCTGA-
1 TCATATTTATTTCTCAACTTGTGGCTTAATCCT-AC
*
23871079 TCATCTTTATT
1 TCATATTTATT
23871090 CTTTGACTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
35 37 0.97
36 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.51
Consensus pattern (35 bp):
TCATATTTATTTCTCAACTTGTGGCTTAATCCTAC
Found at i:23871362 original size:35 final size:34
Alignment explanation
Indices: 23871323--23871405 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 34
23871313 CCAGTCATCG
* *
23871323 TTATTTTTTGACTAGCGATTCAATCTTGATTATAT
1 TTATTTTTTGACTAGCAATTCAATCCTGATTAT-T
* * * *
23871358 TTATTTCTTGACTCGTAATTTAATCCTGATTATT
1 TTATTTTTTGACTAGCAATTCAATCCTGATTATT
23871392 TTCATTTTTTGACT
1 TT-ATTTTTTGACT
23871406 TCCGGTTTAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
34 3 0.08
35 37 0.93
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.54
Consensus pattern (34 bp):
TTATTTTTTGACTAGCAATTCAATCCTGATTATT
Found at i:23873875 original size:3 final size:3
Alignment explanation
Indices: 23873743--23873860 Score: 184
Period size: 3 Copynumber: 39.0 Consensus size: 3
23873733 TTATTTCAAA
* *
23873743 AAT AAT AAT AAA AAGG AAT AAT AAT AAT ACA- AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
23873789 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
23873837 AGT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT
23873861 TTTAATTTTA
Statistics
Matches: 107, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
2 1 0.01
3 103 0.96
4 3 0.03
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:23881468 original size:7 final size:7
Alignment explanation
Indices: 23881456--23881499 Score: 61
Period size: 7 Copynumber: 6.0 Consensus size: 7
23881446 ATTTTTTTGC
23881456 TATTTTT
1 TATTTTT
23881463 TATTTTT
1 TATTTTT
23881470 TATTTATT
1 TATTT-TT
23881478 TATTTTT
1 TATTTTT
*
23881485 TGTTTGTT
1 TATTT-TT
23881493 TATTTTT
1 TATTTTT
23881500 AGGGATATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 20 0.61
8 13 0.39
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.82
Consensus pattern (7 bp):
TATTTTT
Found at i:23881479 original size:15 final size:14
Alignment explanation
Indices: 23881456--23881499 Score: 61
Period size: 15 Copynumber: 3.0 Consensus size: 14
23881446 ATTTTTTTGC
23881456 TATTTTTTATTTTT
1 TATTTTTTATTTTT
23881470 TATTTATTTATTTTT
1 TATTT-TTTATTTTT
*
23881485 TGTTTGTTTATTTTT
1 TATTT-TTTATTTTT
23881500 AGGGATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 5 0.19
15 22 0.81
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.82
Consensus pattern (14 bp):
TATTTTTTATTTTT
Found at i:23885914 original size:9 final size:9
Alignment explanation
Indices: 23885902--23886006 Score: 81
Period size: 9 Copynumber: 11.6 Consensus size: 9
23885892 GGAAAGAAAT
23885902 GAAAAAAAA
1 GAAAAAAAA
23885911 GAAAAAAAA
1 GAAAAAAAA
*
23885920 G-AAAAAAT
1 GAAAAAAAA
*
23885928 GATGAAAAAA
1 GA-AAAAAAA
*
23885938 G-AAGAAAA
1 GAAAAAAAA
* **
23885946 GAGAAAAGG
1 GAAAAAAAA
* *
23885955 GAAAGAGAA
1 GAAAAAAAA
23885964 -AAAAAAAA
1 GAAAAAAAA
23885972 GAAAAAAAA
1 GAAAAAAAA
23885981 GAAAAAAAA
1 GAAAAAAAA
23885990 GAGAATAAAAGA
1 GA-AA-AAAA-A
23886002 GAAAA
1 GAAAA
23886007 TGAAAGAATG
Statistics
Matches: 73, Mismatches: 16, Indels: 13
0.72 0.16 0.13
Matches are distributed among these distances:
8 19 0.26
9 36 0.49
10 9 0.12
11 6 0.08
12 3 0.04
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:23885967 original size:15 final size:15
Alignment explanation
Indices: 23885931--23886044 Score: 57
Period size: 13 Copynumber: 8.0 Consensus size: 15
23885921 AAAAAATGAT
23885931 GAAAAAAGAAGAAAA
1 GAAAAAAGAAGAAAA
* *
23885946 GAGAAAAG--GGAAA
1 GAAAAAAGAAGAAAA
*
23885959 GAGAAAA-AA-AAAA
1 GAAAAAAGAAGAAAA
23885972 GAAAAAA-AAGAAAA
1 GAAAAAAGAAGAAAA
* *
23885986 -AAAAGAGAATAAAA
1 GAAAAAAGAAGAAAA
* *
23886000 GAGAAAATGAA-AGAAT
1 GA-AAAAAGAAGA-AAA
*
23886016 G-AAAATGAA-AAAA
1 GAAAAAAGAAGAAAA
*
23886029 TAAAAAAGAGAGAAAA
1 GAAAAAAGA-AGAAAA
23886045 AGAAGACTCA
Statistics
Matches: 77, Mismatches: 12, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
13 29 0.38
14 25 0.32
15 10 0.13
16 13 0.17
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.04
Consensus pattern (15 bp):
GAAAAAAGAAGAAAA
Found at i:23886000 original size:54 final size:55
Alignment explanation
Indices: 23885912--23886050 Score: 142
Period size: 53 Copynumber: 2.5 Consensus size: 55
23885902 GAAAAAAAAG
* **
23885912 AAAAAAAAG-AAAAAATGATGAAAAA-AGAAGAAAAGAGAAAAGGGAAAG-A-GAA
1 AAAAAAAAGAAAAAAAAGAAAAAAAAGAGAAGAAAAGAGAAAA-GGAAAGAATGAA
* *
23885964 AAAAAAAAGAAAAAAAAGAAAAAAAAGAGAATAAAAGAGAAAATGAAAGAATGAA
1 AAAAAAAAGAAAAAAAAGAAAAAAAAGAGAAGAAAAGAGAAAAGGAAAGAATGAA
* *
23886019 AATGAAAAAATAAAAAAGAGAGAAAAAGAAGA
1 AA--AAAAAAGAAAAAA-A-AGAAAAAAAAGA
23886051 CTCAAATTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
52 9 0.12
53 18 0.25
54 16 0.22
55 5 0.07
57 12 0.17
58 1 0.01
59 11 0.15
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.05
Consensus pattern (55 bp):
AAAAAAAAGAAAAAAAAGAAAAAAAAGAGAAGAAAAGAGAAAAGGAAAGAATGAA
Found at i:23887636 original size:83 final size:79
Alignment explanation
Indices: 23887469--23887791 Score: 281
Period size: 80 Copynumber: 4.0 Consensus size: 79
23887459 TGAGCTTTTA
* * * *
23887469 TTTTTTAAAGTTGTTATGCCTCTATTTAGAATAGCCTTTTATTTTTCAAAGTTGTTGAGCCTCTA
1 TTTTTTAAAGTTGTTGTGCCTCTATTTAGAAGAGCC-TTTAATTTTCAAAGTTATTGAGCCTCTA
*
23887534 TTTAGAGAAGCCTTTTTT
65 TTTAGAAAAGCC---TTT
* * * *
23887552 TTTTTTAAAGTTGTTGTGCCTCTATTTAGAAGAGTCTTTAATTTTCAAAGTTATTGCGCCTTTGT
1 TTTTTTAAAGTTGTTGTGCCTCTATTTAGAAGAGCCTTTAATTTTCAAAGTTATTGAGCCTCTAT
*
23887617 TTAGAAAAGGCTTT
66 TTAGAAAAGCCTTT
* * * * * * *
23887631 ATTTTTCAAAGTTATTGTGCCTCTGTTTAGAGGAACCTTT-ATTCTTCAAAGTTGTTAAGCCTCT
1 -TTTTTTAAAGTTGTTGTGCCTCTATTTAGAAGAGCCTTTAATT-TTCAAAGTTATTGAGCCTCT
**
23887695 ATTTAGATGAG-CTTT
64 ATTTAGAAAAGCCTTT
* * * * * * * * *
23887710 TATTTTCTAAAGCTATTGTGTCTCTGTTTAGAGGAGCCTTTTATTTTTTAAAATTATTGTGCCTC
1 T-TTTT-TAAAGTTGTTGTGCCTCTATTTAGAAGAGCC-TTTAATTTTCAAAGTTATTGAGCCTC
* *
23887775 TGTTTAGAAGAGCCTTT
63 TATTTAGAAAAGCCTTT
23887792 ATCTTGCCAA
Statistics
Matches: 198, Mismatches: 35, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
78 1 0.01
79 14 0.07
80 84 0.42
81 27 0.14
82 39 0.20
83 33 0.17
ACGTcount: A:0.23, C:0.13, G:0.16, T:0.47
Consensus pattern (79 bp):
TTTTTTAAAGTTGTTGTGCCTCTATTTAGAAGAGCCTTTAATTTTCAAAGTTATTGAGCCTCTAT
TTAGAAAAGCCTTT
Found at i:23887893 original size:41 final size:40
Alignment explanation
Indices: 23887460--23887893 Score: 338
Period size: 41 Copynumber: 10.7 Consensus size: 40
23887450 GATTGTCGAT
* * * *
23887460 GAGCTTTTATTTTTTAAAGTTGTT-ATGCCTCTATTTAGAA
1 GAGCTTTTATTTTTCAAAGTTATTGA-GCCTCTGTTTAGAG
* * *
23887500 TAGCCTTTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAG
1 GAG-CTTTTATTTTTCAAAGTTATTGAGCCTCTGTTTAGAG
* * * * * * *
23887541 AAGCCTTTTTTTTTTTTAAAGTTGTTGTGCCTCTATTTAGAA
1 GAG-C-TTTTATTTTTCAAAGTTATTGAGCCTCTGTTTAGAG
* * * *
23887583 GAG-TCTTTAATTTTCAAAGTTATTGCGCCTTTGTTTAGAA
1 GAGCT-TTTATTTTTCAAAGTTATTGAGCCTCTGTTTAGAG
* *
23887623 AAGGC-TTTATTTTTCAAAGTTATTGTGCCTCTGTTTAGAG
1 GA-GCTTTTATTTTTCAAAGTTATTGAGCCTCTGTTTAGAG
* * * * * * *
23887663 GAACCTTTATTCTTCAAAGTTGTTAAGCCTCTATTTAGAT
1 GAGCTTTTATTTTTCAAAGTTATTGAGCCTCTGTTTAGAG
* * *
23887703 GAGCTTTTA-TTTTCTAAAGCTATTGTGTCTCTGTTTAGAG
1 GAGCTTTTATTTTTC-AAAGTTATTGAGCCTCTGTTTAGAG
* * * *
23887743 GAGCCTTTTATTTTTTAAAATTATTGTGCCTCTGTTTAGAA
1 GAG-CTTTTATTTTTCAAAGTTATTGAGCCTCTGTTTAGAG
* ** * *
23887784 GAGCCTTTATCTTGCCAAAGTTGTTGAGCCTTTGTTTAGAG
1 GAGCTTTTAT-TTTTCAAAGTTATTGAGCCTCTGTTTAGAG
* * **
23887825 AAGCCTTTTATTTTTCACAGTCGTTGAGCCAT-TGTTTAGAG
1 GAG-CTTTTATTTTTCAAAGTTATTGAGCC-TCTGTTTAGAG
23887866 GAGCTTTTTATTTTTCAAAGTTATTGAG
1 GAGC-TTTTATTTTTCAAAGTTATTGAG
23887894 GAGCCTTTTA
Statistics
Matches: 317, Mismatches: 63, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
39 6 0.02
40 127 0.40
41 138 0.44
42 46 0.15
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (40 bp):
GAGCTTTTATTTTTCAAAGTTATTGAGCCTCTGTTTAGAG
Found at i:23887920 original size:28 final size:28
Alignment explanation
Indices: 23887863--23887921 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
23887853 CCATTGTTTA
* * *
23887863 GAGGAGCTTTTTATTTTTCAAAGTTATT
1 GAGGAGCCTTTTATTTTCCAAAGTCATT
*
23887891 GAGGAGCCTTTTATTTTCCAAAGTCGTT
1 GAGGAGCCTTTTATTTTCCAAAGTCATT
23887919 GAG
1 GAG
23887922 CCTCTGTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.42
Consensus pattern (28 bp):
GAGGAGCCTTTTATTTTCCAAAGTCATT
Found at i:23887936 original size:41 final size:41
Alignment explanation
Indices: 23887891--23888279 Score: 347
Period size: 41 Copynumber: 9.4 Consensus size: 41
23887881 CAAAGTTATT
*
23887891 GAGGAGCCTTTTATTTTCCAAAGTCGTTGAGCCTCTGTTTA
1 GAGGAGCCTTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
**
23887932 GAGGAGCC-TTTATTTTTCAAAGTCGTTTTGCCTCTGTTTA
1 GAGGAGCCTTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
* * * * * *
23887972 GAAGAGCC-TTTATTTTTCAAAATTGTTGTGCCACTATTTA
1 GAGGAGCCTTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
* * *
23888012 GAGGAGCCTTTT-TATTTTCTAAAGTTGTTGTGCCTTTGTTTA
1 GAGGAGCCTTTTAT-TTTTC-AAAGTCGTTGAGCCTCTGTTTA
* **
23888054 GAGGAG-CTTTTATCTTTTCAAAGTTGTTGAGCCTCCATTTA
1 GAGGAGCCTTTTAT-TTTTCAAAGTCGTTGAGCCTCTGTTTA
* * *
23888095 GAGGAGCCTTTTATTTTTCAAAATCGTTGAGCCTTTGCTTA
1 GAGGAGCCTTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
* * * **
23888136 GAAGAGGCTTTTATTTTTCAAAGTCATTGAGCCTCTAATTA
1 GAGGAGCCTTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
* * * * *
23888177 GAGGAACCTTTATTTTTCTTTTTCAAAGTCATTGAGCCTTTGATTA
1 GAGGAGCC-----TTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
* * * * *
23888223 AATGAG-CATTTATTTTTTAAAATCGTTGAGCCTCTGTTTA
1 GAGGAGCCTTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
*
23888263 GAAGAGCCATATTTATT
1 GAGGAGCC-T-TTTATT
23888280 ATTTTTGAAA
Statistics
Matches: 284, Mismatches: 51, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
40 101 0.36
41 106 0.37
42 37 0.13
43 6 0.02
45 1 0.00
46 33 0.12
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.43
Consensus pattern (41 bp):
GAGGAGCCTTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
Found at i:23887937 original size:69 final size:68
Alignment explanation
Indices: 23887826--23887954 Score: 206
Period size: 69 Copynumber: 1.9 Consensus size: 68
23887816 TGTTTAGAGA
* * *
23887826 AGCCTTTTATTTTTCACAGTCGTTGAGCCATTGTTTAGAGGAGCTTTTTATTTTTCAAAGTTATT
1 AGCCTTTTATTTTCCAAAGTCGTTGAGCCATTGTTTAGAGGAGC-CTTTATTTTTCAAAGTTATT
23887891 GAGG
65 GAGG
23887895 AGCCTTTTATTTTCCAAAGTCGTTGAGCC-TCTGTTTAGAGGAGCCTTTATTTTTCAAAGT
1 AGCCTTTTATTTTCCAAAGTCGTTGAGCCAT-TGTTTAGAGGAGCCTTTATTTTTCAAAGT
23887955 CGTTTTGCCT
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
68 16 0.29
69 40 0.71
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.43
Consensus pattern (68 bp):
AGCCTTTTATTTTCCAAAGTCGTTGAGCCATTGTTTAGAGGAGCCTTTATTTTTCAAAGTTATTG
AGG
Found at i:23887955 original size:40 final size:40
Alignment explanation
Indices: 23887891--23888270 Score: 337
Period size: 40 Copynumber: 9.2 Consensus size: 40
23887881 CAAAGTTATT
*
23887891 GAGGAGCCTTTTATTTTCCAAAGTCGTTGAGCCTCTGTTTA
1 GAGGAGCC-TTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
**
23887932 GAGGAGCCTTTATTTTTCAAAGTCGTTTTGCCTCTGTTTA
1 GAGGAGCCTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
* * * * * *
23887972 GAAGAGCCTTTATTTTTCAAAATTGTTGTGCCACTATTTA
1 GAGGAGCCTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
* * * *
23888012 GAGGAGCCTTTTTATTTTCTAAAGTTGTTGTGCCTTTGTTTA
1 GAGGAGCCTTTAT-TTTTC-AAAGTCGTTGAGCCTCTGTTTA
* * **
23888054 GAGGAGCTTTTATCTTTTCAAAGTTGTTGAGCCTCCATTTA
1 GAGGAGCCTTTAT-TTTTCAAAGTCGTTGAGCCTCTGTTTA
* * *
23888095 GAGGAGCCTTTTATTTTTCAAAATCGTTGAGCCTTTGCTTA
1 GAGGAGCC-TTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
* * * **
23888136 GAAGAGGCTTTTATTTTTCAAAGTCATTGAGCCTCTAATTA
1 GAGGA-GCCTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
* * * *
23888177 GAGGAACCTTTATTTTTCTTTTTCAAAGTCATTGAGCCTTTGATTA
1 GAGGAGCCTTTA------TTTTTCAAAGTCGTTGAGCCTCTGTTTA
* * * * *
23888223 AATGAGCATTTATTTTTTAAAATCGTTGAGCCTCTGTTTA
1 GAGGAGCCTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
*
23888263 GAAGAGCC
1 GAGGAGCC
23888271 ATATTTATTA
Statistics
Matches: 276, Mismatches: 53, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
40 107 0.39
41 94 0.34
42 41 0.15
46 34 0.12
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (40 bp):
GAGGAGCCTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTA
Found at i:23887981 original size:191 final size:192
Alignment explanation
Indices: 23887731--23888084 Score: 491
Period size: 191 Copynumber: 1.8 Consensus size: 192
23887721 GCTATTGTGT
* *
23887731 CTCTGTTTAGAGGAGCCTTTTATTTTTTAAAATTATTGTGCCTCTGTTTAGAAGAGCCTTTATCT
1 CTCTGTTTAGAGGAGCCTTTTATTTTTCAAAATCATTGTGCCTCTGTTTAGAAGAGCCTTTAT-T
* ** * *
23887796 TGCCAAAGTTGTTGAGCCTTTGTTTAGAGAAGCC-TTTTATTTT-TCACAGTCGTTGAGCCATTG
65 TGCCAAAATTGTTGAGCCACTATTTAGAGAAGCCTTTTTATTTTCT-AAAGTCGTTGAGCCATTG
23887859 TTTAGAGGAGCTTTTTAT-TTTTCAAAGTTATTGAGGAGCCTTTTATTTTCCAAAGTCGTTGAGC
129 TTTAGAGGAGC-TTTTATCTTTTCAAAGTTATTGAGGAGCCTTTTATTTTCCAAAGTCGTTGAGC
* * *
23887923 CTCTGTTTAGAGGAGCC-TTTATTTTTCAAAGTCGTTTTGCCTCTGTTTAGAAGAGCCTTTATTT
1 CTCTGTTTAGAGGAGCCTTTTATTTTTCAAAATCATTGTGCCTCTGTTTAGAAGAGCCTTTATTT
** * * * * *
23887987 TTCAAAATTGTTGTGCCACTATTTAGAGGAGCCTTTTTATTTTCTAAAGTTGTTGTGCCTTTGTT
66 GCCAAAATTGTTGAGCCACTATTTAGAGAAGCCTTTTTATTTTCTAAAGTCGTTGAGCCATTGTT
*
23888052 TAGAGGAGCTTTTATCTTTTCAAAGTTGTTGAG
131 TAGAGGAGCTTTTATCTTTTCAAAGTTATTGAG
23888085 CCTCCATTTA
Statistics
Matches: 141, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
190 33 0.23
191 90 0.64
192 18 0.13
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.44
Consensus pattern (192 bp):
CTCTGTTTAGAGGAGCCTTTTATTTTTCAAAATCATTGTGCCTCTGTTTAGAAGAGCCTTTATTT
GCCAAAATTGTTGAGCCACTATTTAGAGAAGCCTTTTTATTTTCTAAAGTCGTTGAGCCATTGTT
TAGAGGAGCTTTTATCTTTTCAAAGTTATTGAGGAGCCTTTTATTTTCCAAAGTCGTTGAGC
Found at i:23887981 original size:232 final size:230
Alignment explanation
Indices: 23887660--23888116 Score: 577
Period size: 232 Copynumber: 2.0 Consensus size: 230
23887650 CCTCTGTTTA
* * *
23887660 GAGGAACCTTTATTCTTCAAAGTTGTTAAGCCTCTATTTAGATGAGCTTTTATTTTCTAAAGCTA
1 GAGGAACCTTTATTCTTCAAAGTCGTTAAGCCTCTATTTAGAGGAGCCTTTATTTTCTAAAGCTA
* * * * *
23887725 TTGTGTCTCTGTTTAGAGGAGCCTTTTATTTTTTAAAATTATTGTGCCTCTGTTTAGAAGAGCC-
66 TTGTGCCTCTGTTTAGAAGAGCC-TTTATTTTTCAAAATTATTGTGCCACTATTTAGAAGAGCCT
*
23887789 TTTATCTTGCCAAAGTTGTTGAGCCTTTGTTTAGAGAAGCCTTTTAT-TTTTCACAGTCGTTGAG
130 TTTAT-TTGCCAAAGTTGTTGAGCCTTTGTTTAGAGAAG-CTTTTATCTTTTCAAAGTCGTTGAG
** *
23887853 CCAT-TGTTTAGAGGAGCTTTTTATTTTTCAAAGTTATT
193 CC-TCCATTTAGAGGAGCCTTTTATTTTTCAAAGTTATT
* * *
23887891 GAGGAGCCTTTTATT-TTCCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCCTTTATTTT-TCAAAG
1 GAGGAACC-TTTATTCTT-CAAAGTCGTTAAGCCTCTATTTAGAGGAGCCTTTATTTTCT-AAAG
* *
23887954 TCGT-TT-TGCCTCTGTTTAGAAGAGCCTTTATTTTTCAAAATTGTTGTGCCACTATTTAGAGGA
63 -C-TATTGTGCCTCTGTTTAGAAGAGCCTTTATTTTTCAAAATTATTGTGCCACTATTTAGAAGA
* * * * *
23888017 GCCTTTTTATTTTCTAAAGTTGTTGTGCCTTTGTTTAGAGGAGCTTTTATCTTTTCAAAGTTGTT
126 GCC-TTTTATTTGCCAAAGTTGTTGAGCCTTTGTTTAGAGAAGCTTTTATCTTTTCAAAGTCGTT
23888082 GAGCCTCCATTTAGAGGAGCCTTTTATTTTTCAAA
190 GAGCCTCCATTTAGAGGAGCCTTTTATTTTTCAAA
23888117 ATCGTTGAGC
Statistics
Matches: 195, Mismatches: 22, Indels: 17
0.83 0.09 0.07
Matches are distributed among these distances:
231 53 0.27
232 133 0.68
233 8 0.04
234 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.44
Consensus pattern (230 bp):
GAGGAACCTTTATTCTTCAAAGTCGTTAAGCCTCTATTTAGAGGAGCCTTTATTTTCTAAAGCTA
TTGTGCCTCTGTTTAGAAGAGCCTTTATTTTTCAAAATTATTGTGCCACTATTTAGAAGAGCCTT
TTATTTGCCAAAGTTGTTGAGCCTTTGTTTAGAGAAGCTTTTATCTTTTCAAAGTCGTTGAGCCT
CCATTTAGAGGAGCCTTTTATTTTTCAAAGTTATT
Done.