Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 130 of 131
Found at i:23888235 original size:46 final size:46
Alignment explanation
Indices: 23888144--23888239 Score: 129
Period size: 46 Copynumber: 2.1 Consensus size: 46
23888134 TAGAAGAGGC
* *
23888144 TTTTATTTTTCAAAGTCATTGAGCCTCTAATTAGAGGAACCTTTAT
1 TTTTATTTTTCAAAGTCATTGAGCCTCTAATTAAAGGAACATTTAT
* * * * *
23888190 TTTTCTTTTTCAAAGTCATTGAGCCTTTGATTAAATGAGCATTTAT
1 TTTTATTTTTCAAAGTCATTGAGCCTCTAATTAAAGGAACATTTAT
23888236 TTTT
1 TTTT
23888240 TAAAATCGTT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.48
Consensus pattern (46 bp):
TTTTATTTTTCAAAGTCATTGAGCCTCTAATTAAAGGAACATTTAT
Found at i:23888369 original size:13 final size:14
Alignment explanation
Indices: 23888351--23888383 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
23888341 TCTAGTTTTG
*
23888351 AAAAAATAAAA-AA
1 AAAAAACAAAAGAA
23888364 AAAAAACAAAAGAA
1 AAAAAACAAAAGAA
23888378 AAAAAA
1 AAAAAA
23888384 ATGGATGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.91, C:0.03, G:0.03, T:0.03
Consensus pattern (14 bp):
AAAAAACAAAAGAA
Found at i:23888564 original size:12 final size:12
Alignment explanation
Indices: 23888547--23888579 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
23888537 CATCTAGCCC
23888547 AATTATTTTTTT
1 AATTATTTTTTT
23888559 AATTA-TTTTTT
1 AATTATTTTTTT
23888570 AATT-TTTTTT
1 AATTATTTTTT
23888580 GGGTTAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
AATTATTTTTTT
Found at i:23888970 original size:12 final size:12
Alignment explanation
Indices: 23888953--23888978 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23888943 TGAAAAAGGT
23888953 AATTTTTCTAGA
1 AATTTTTCTAGA
23888965 AATTTTTCTAGA
1 AATTTTTCTAGA
23888977 AA
1 AA
23888979 CGTTTTAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (12 bp):
AATTTTTCTAGA
Found at i:23889023 original size:31 final size:31
Alignment explanation
Indices: 23888987--23889053 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
23888977 AACGTTTTAG
*
23888987 TTTTTCGGTGAATATTT-CAACCTC-AGTTGAA
1 TTTTTCAGTGAAT-TTTCCAACCTCGA-TTGAA
*
23889018 TTTTTCAGTGAATTTTCCAGCCTCGATTGAA
1 TTTTTCAGTGAATTTTCCAACCTCGATTGAA
23889049 TTTTT
1 TTTTT
23889054 TGGAGAGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 3 0.09
31 28 0.88
32 1 0.03
ACGTcount: A:0.22, C:0.16, G:0.15, T:0.46
Consensus pattern (31 bp):
TTTTTCAGTGAATTTTCCAACCTCGATTGAA
Found at i:23890224 original size:51 final size:51
Alignment explanation
Indices: 23890168--23890265 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 51
23890158 CCAAAAACGA
* * * * * *
23890168 AAAAAAAAGAATTTTTAAATAGGCCCTAATGTTGAAAAATTTAGAAATTTCG
1 AAAAAAAA-TATTTCTAAATAGACCCAAATGGTAAAAAATTTAGAAATTTCG
*
23890220 AAAAAAAATATTTCTAAATTGACCCAAATGGTAAAAAATTTAGAAA
1 AAAAAAAATATTTCTAAATAGACCCAAATGGTAAAAAATTTAGAAA
23890266 CCCAAATAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
51 31 0.79
52 8 0.21
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.29
Consensus pattern (51 bp):
AAAAAAAATATTTCTAAATAGACCCAAATGGTAAAAAATTTAGAAATTTCG
Found at i:23893773 original size:20 final size:21
Alignment explanation
Indices: 23893750--23893795 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
23893740 ATTTTAGTTA
23893750 TATTAT-TTTTAATGA-ATTTT
1 TATTATATTTTAAT-ATATTTT
23893770 TATT-TATTTTAATATATTTT
1 TATTATATTTTAATATATTTT
23893790 TATTAT
1 TATTAT
23893796 GTTAATTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 2 0.09
20 20 0.87
21 1 0.04
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TATTATATTTTAATATATTTT
Found at i:23895145 original size:374 final size:372
Alignment explanation
Indices: 23894423--23895186 Score: 862
Period size: 374 Copynumber: 2.0 Consensus size: 372
23894413 AAATCTCTAC
23894423 ATATATATCATACATATCCACACATTCTTTCAATGTAGAATTGAGGCAATTACAATCTCTCTACC
1 ATATATATCATACATATCCACACATTCTTTCAATGTAGAATTGAGGCAATTACAATCTCTCTACC
** * * * * * * *
23894488 TTTAAAGCTTGGCATCTTTATTAAACTGAGTCCAACCACAAGACTAAAATGACACTAGATGTTGG
66 TTTAAAGCTTAACATCCTTATCAAACTGAGTCCAACCACAAGACCAAAATCACACCAAATGTTGA
* * * * *
23894553 GATTTAGTCACTCTTATAGCCTTATCGTGTAGCACTTAATGACTTTCCCAGTCGTACTATATAGC
131 GATTTAATCACTCTCATAGCCTTATCGTGTAGCACTTAATGACTCTCACAGCCGTACTATATAGC
* * * *
23894618 ACTTAGTAACTCCCACGATGTAGCACTTACTTCTTATTGACTAGTAGCCGTTCTGATACATTTTG
196 ACTTAGTAACTCCCACGATATAGCACTTACTTCTTATTGACTACTAACCATTCTGATACATTTTG
** ** * *
23894683 TGGAGACCTACACCCAACCTGTGAGGTACTATCTGCTTTGACCTGAAGATCTCATGATTTTGTCC
261 TAAAGACCTACACCCAACCTACGAGGTACTATCTGCTTTGACCTGAAGATCTCACGATTTTATCC
** *
23894748 CAAAAAAGGTGCCTCTCAAGTTTA-AGTTTAGATCTT-TATATATATAT
326 CAAAAAAGGCACCTCTCAAGTTTAGA-TTTAGAT-TTCTACATATATAT
* * * *
23894795 ATATATATCATACCATATCCATACATTCTTTCAATGTAGGATTGGGGGC-ATTACAATCT-TTTC
1 ATATATATCATA-CATATCCACACATTCTTTCAATGTAGAATT-GAGGCAATTACAATCTCTCT-
* * * *
23894858 ACTTTTAAATCTTAACATCCTTATCAAGCTGAGTCCAACCATAAGACCAAAATCACACCAAATGT
63 ACCTTTAAAGCTTAACATCCTTATCAAACTGAGTCCAACCACAAGACCAAAATCACACCAAATGT
* * * * *
23894923 TGAGATTTTAATGACTCTCATAGCTTTATCGTGTAGCATTTAATGACTCTCACGGCCTTACTATA
128 TGAGA-TTTAATCACTCTCATAGCCTTATCGTGTAGCACTTAATGACTCTCACAGCCGTACTATA
* * * **
23894988 TAGCACTTAGTAACTCCCATGATATAGCACTTAGTTTTTGA-TGACTACTAATTATTCTGATACC
192 TAGCACTTAGTAACTCCCACGATATAGCACTTACTTCTT-ATTGACTACTAACCATTCTGATA-C
* * * * * *
23895052 A-TTTGTAAAGACCTATATCCAACCTACGAGGTGCTATCTGTTTTGATCTGAA-AGTCTCACGGT
255 ATTTTGTAAAGACCTACACCCAACCTACGAGGTACTATCTGCTTTGACCTGAAGA-TCTCACGAT
* * *
23895115 TTTATCCCACAGAAGGCACTTCAT-AAGTTTAGATTTAGATTTCTACATATATAT
319 TTTATCCCAAAAAAGGCACCTC-TCAAGTTTAGATTTAGATTTCTACATATATAT
*
23895169 CATACCATATCA-ACATAT
1 -ATA-TATATCATACATAT
23895187 TCTTCCAATG
Statistics
Matches: 325, Mismatches: 55, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
372 14 0.04
373 98 0.30
374 198 0.61
375 9 0.03
376 6 0.02
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.35
Consensus pattern (372 bp):
ATATATATCATACATATCCACACATTCTTTCAATGTAGAATTGAGGCAATTACAATCTCTCTACC
TTTAAAGCTTAACATCCTTATCAAACTGAGTCCAACCACAAGACCAAAATCACACCAAATGTTGA
GATTTAATCACTCTCATAGCCTTATCGTGTAGCACTTAATGACTCTCACAGCCGTACTATATAGC
ACTTAGTAACTCCCACGATATAGCACTTACTTCTTATTGACTACTAACCATTCTGATACATTTTG
TAAAGACCTACACCCAACCTACGAGGTACTATCTGCTTTGACCTGAAGATCTCACGATTTTATCC
CAAAAAAGGCACCTCTCAAGTTTAGATTTAGATTTCTACATATATAT
Found at i:23908604 original size:22 final size:22
Alignment explanation
Indices: 23908579--23908624 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
23908569 GCTAAAAAGA
23908579 TTGACTGAATGAGATAAACACG
1 TTGACTGAATGAGATAAACACG
23908601 TTGACTGAATGAGATAAACACG
1 TTGACTGAATGAGATAAACACG
23908623 TT
1 TT
23908625 AACAATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (22 bp):
TTGACTGAATGAGATAAACACG
Found at i:23912354 original size:17 final size:16
Alignment explanation
Indices: 23912326--23912415 Score: 78
Period size: 17 Copynumber: 5.4 Consensus size: 16
23912316 TTTTGATTTT
23912326 GGGTTTGGATTTTAAG
1 GGGTTTGGATTTTAAG
23912342 GGGTTTCGGATTTT-AG
1 GGGTTT-GGATTTTAAG
23912358 GGGATTTCGGATTTTTATA-
1 GGG-TTT-GGA-TTTTA-AG
23912377 GGGTTTGGA-TTTAAG
1 GGGTTTGGATTTTAAG
* *
23912392 GGATTTTGGATTTTTTAG
1 GG-GTTTGGA-TTTTAAG
23912410 GGGTTT
1 GGGTTT
23912416 TAGAAACCTA
Statistics
Matches: 62, Mismatches: 3, Indels: 17
0.76 0.04 0.21
Matches are distributed among these distances:
14 1 0.02
15 6 0.10
16 17 0.27
17 20 0.32
18 14 0.23
19 3 0.05
20 1 0.02
ACGTcount: A:0.17, C:0.02, G:0.34, T:0.47
Consensus pattern (16 bp):
GGGTTTGGATTTTAAG
Found at i:23912401 original size:16 final size:16
Alignment explanation
Indices: 23912286--23912404 Score: 74
Period size: 17 Copynumber: 7.6 Consensus size: 16
23912276 AGGTTTGAGG
23912286 TTTT-GATTTAA-GGA
1 TTTTGGATTTAAGGGA
*
23912300 -TTTGGATTTTAGGGA
1 TTTTGGATTTAAGGGA
* *
23912315 TTTTTGATTT-TGGG-
1 TTTTGGATTTAAGGGA
*
23912329 -TTTGGATTTTAAGGGG
1 TTTTGGA-TTTAAGGGA
* *
23912345 TTTCGGATTTTAGGGGA
1 TTTTGGA-TTTAAGGGA
*
23912362 TTTCGGATTTTTATAGGG-
1 TTTTGGA--TTTA-AGGGA
23912380 -TTTGGATTTAAGGGA
1 TTTTGGATTTAAGGGA
23912395 TTTTGGATTT
1 TTTTGGATTT
23912405 TTTAGGGGTT
Statistics
Matches: 84, Mismatches: 10, Indels: 20
0.74 0.09 0.18
Matches are distributed among these distances:
13 8 0.10
14 13 0.15
15 13 0.15
16 17 0.20
17 25 0.30
18 5 0.06
19 3 0.04
ACGTcount: A:0.18, C:0.02, G:0.30, T:0.50
Consensus pattern (16 bp):
TTTTGGATTTAAGGGA
Found at i:23912414 original size:33 final size:35
Alignment explanation
Indices: 23912329--23912415 Score: 110
Period size: 33 Copynumber: 2.6 Consensus size: 35
23912319 TGATTTTGGG
* *
23912329 TTTGGA-TTTTAAGGGGTTTCGGATTTTAGGGGAT
1 TTTGGATTTTTTAGGGGTTTCGGATTTTAAGGGAT
*
23912363 TTCGGATTTTTATA-GGGTTT-GGA-TTTAAGGGAT
1 TTTGGATTTTT-TAGGGGTTTCGGATTTTAAGGGAT
23912396 TTTGGATTTTTTAGGGGTTT
1 TTTGGATTTTTTAGGGGTTT
23912416 TAGAAACCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
32 2 0.04
33 25 0.54
34 8 0.17
35 10 0.22
36 1 0.02
ACGTcount: A:0.17, C:0.02, G:0.32, T:0.48
Consensus pattern (35 bp):
TTTGGATTTTTTAGGGGTTTCGGATTTTAAGGGAT
Found at i:23913488 original size:14 final size:14
Alignment explanation
Indices: 23913465--23913495 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
23913455 ATCTTTGTTT
*
23913465 TTTTTTTGTTTCTG
1 TTTTTATGTTTCTG
23913479 TTTTTATGTTTCTG
1 TTTTTATGTTTCTG
23913493 TTT
1 TTT
23913496 GGGTTTGGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.03, C:0.06, G:0.13, T:0.77
Consensus pattern (14 bp):
TTTTTATGTTTCTG
Found at i:23913713 original size:10 final size:10
Alignment explanation
Indices: 23913685--23913719 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
23913675 AAAGGGGATC
*
23913685 TAGGTGGTTG
1 TAGGTGGCTG
23913695 TATGGTGGCTG
1 TA-GGTGGCTG
23913706 TAGGTGGCTG
1 TAGGTGGCTG
23913716 TAGG
1 TAGG
23913720 CTGGTGAACG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.11, C:0.06, G:0.49, T:0.34
Consensus pattern (10 bp):
TAGGTGGCTG
Found at i:23913829 original size:8 final size:8
Alignment explanation
Indices: 23913798--23913832 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
23913788 CCCTACTTTC
*
23913798 TATTTTTC
1 TATTTTTT
23913806 TATTTTTT
1 TATTTTTT
*
23913814 TATGTTTT
1 TATTTTTT
23913822 TATTTTTT
1 TATTTTTT
23913830 TAT
1 TAT
23913833 AAAATTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (8 bp):
TATTTTTT
Found at i:23913847 original size:23 final size:22
Alignment explanation
Indices: 23913821--23913874 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
23913811 TTTTATGTTT
23913821 TTATT-TTTTTATAAAATTAATAA
1 TTATTATTTTT-TAAAATT-ATAA
*
23913844 TTATATATTTTTTAAAATTATTA
1 TTAT-TATTTTTTAAAATTATAA
23913867 TTATTATT
1 TTATTATT
23913875 AAAATTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 4 0.14
23 11 0.39
24 8 0.29
25 5 0.18
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
TTATTATTTTTTAAAATTATAA
Found at i:23913876 original size:18 final size:18
Alignment explanation
Indices: 23913836--23913881 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
23913826 TTTTTATAAA
23913836 ATTAATAATTATATATTTT
1 ATTAA-AATTATATATTTT
23913855 -TTAAAATTAT-TATTATT
1 ATTAAAATTATATATT-TT
23913872 ATTAAAATTA
1 ATTAAAATTA
23913882 AAATAGTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.16
17 8 0.32
18 13 0.52
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTAAAATTATATATTTT
Found at i:23914126 original size:23 final size:23
Alignment explanation
Indices: 23914082--23914149 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 23
23914072 AATCGAATTT
* * *
23914082 ATGCTCGGAGATCTTACA-AATC
1 ATGCCCGGAGGTCATACAGAATC
* *
23914104 ATGCCCGTAGGTCATCCAGAATC
1 ATGCCCGGAGGTCATACAGAATC
* *
23914127 ATGCTCGGAGGTCTTACAGAATC
1 ATGCCCGGAGGTCATACAGAATC
23914150 GATTGGGATA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
22 13 0.36
23 23 0.64
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (23 bp):
ATGCCCGGAGGTCATACAGAATC
Found at i:23914256 original size:132 final size:133
Alignment explanation
Indices: 23914016--23914258 Score: 305
Period size: 132 Copynumber: 1.8 Consensus size: 133
23914006 AAACACAAAA
* * ** * *
23914016 CGATTGGGATGACATCGCAAGTTGAAAAATAATTAATCGATCGAGATAACATCGCGAATCGAATT
1 CGATTGGGATAACACCGCAAGTTGAAAAATAAAAAATCGATCGAGATAACACCGCGAATAGAATT
* * ** *
23914081 TATGCTCGGAGATCTTACAAATCATGCCCGTAGGTCATCCAGAATCATGCTCGGAGGTCTTACAG
66 TATGCCCGAAGATCTTACAAATCATGCCCAAAGGTCATACAGAATCATGCTCGGAGGTCTTACAG
23914146 AAT
131 AAT
23914149 CGATTGGGATAACACCGCAAGTT-AAAAATAAAAAATC-ATTC-AGGATAACACCGCGAATAGAA
1 CGATTGGGATAACACCGCAAGTTGAAAAATAAAAAATCGA-TCGA-GATAACACCGCGAATAGAA
* * *
23914211 TTTATGCCCGAAAGA-CTTAGAAATCATGCTCAAAGGTCTTACAGAATC
64 TTTATGCCCG-AAGATCTTACAAATCATGCCCAAAGGTCATACAGAATC
23914259 GACTGGGATA
Statistics
Matches: 93, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
131 2 0.02
132 67 0.72
133 24 0.26
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (133 bp):
CGATTGGGATAACACCGCAAGTTGAAAAATAAAAAATCGATCGAGATAACACCGCGAATAGAATT
TATGCCCGAAGATCTTACAAATCATGCCCAAAGGTCATACAGAATCATGCTCGGAGGTCTTACAG
AAT
Found at i:23914348 original size:110 final size:109
Alignment explanation
Indices: 23914123--23915124 Score: 1086
Period size: 110 Copynumber: 9.2 Consensus size: 109
23914113 GGTCATCCAG
* * * *
23914123 AATCATGCTCGGAGGTCTTACAGAATCGATTGGGATAACACCGCAAGTTAAAAATAAAAAATC-A
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAAATAAAGAATCGA
* *
23914187 TTC-AGGATAACACCGCGAAT-AGAATTTATGCCCGAAAGACTTAGA
66 -TCGA-GATAACACCGCGAATCA-AATTTATGCCCGGAGGACTTAGA
* ** * * * *
23914232 AATCATGCTCAAAGGTCTTACAGAATCGACTGGGATAACACCGTAAGTCGAAAGAT-AAGAAATC
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTC-AAAAATAAAG-AATC
* * * *
23914296 GATCGAAATAACACCACGAATCAAAATTATGCCCGGAGGTCTTAGA
64 GATCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGACTTAGA
* *
23914342 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACTGCAAGTCAAAAATAAAGAATCAA
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAAATAAAGAATCGA
* * * * **
23914407 TCGAGATAATACCGCGCATCGAATTTATACCTAGAGGACTTAGA
66 TCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGACTTAGA
* * *
23914451 AATCATGCCCGAAGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAAATTAAAGAATCG
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAAA-TAAAGAATCG
* * * *
23914516 ATCGGGATAACATCGCCAATCGAATTTAT----GGAGGACTTAGA
65 ATCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGACTTAGA
* * * * *
23914557 AATCATGCTCGGAGGTTTTACATAATTTATTGGGATAACACCACAAGTCAAAAGATAAAGAATCG
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAA-ATAAAGAATCG
* * * * *
23914622 ATCGGGATAACATCGTGAATCGAATTTATGCCCGGAGGTCTTAGA
65 ATCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGACTTAGA
* * * *** * *
23914667 AATCATGCCCGGAGGTCTCACAGAATTGACTGGAATAACATTACATGTCAAAAATAAAAAATCGA
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAAATAAAGAATCGA
* * * * * * *
23914732 TCGGGATAACATCGCGAATCGAATTTATACCTGAAAGACTTAGA
66 TCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGACTTAGA
* * * * * * * *
23914776 AATCATACCTGAAGGTCTTACAGAATCGACTGGGATAACACTGCAAGTCGAAAGATAAAAAATCG
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTC-AAAAATAAAGAATCG
* * * ** * * *
23914841 ATTGAAATAATATTGCGAATCAAAATTATACCCGGAGGTCTTAGA
65 ATCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGACTTAGA
* * * *
23914886 AATTATGCCCGGAGGTCTTACAAAATTTATTGGGATAACACCACAAGTCAAAAGATAAAGAATCG
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAA-ATAAAGAATCG
* *
23914951 ATCGAAATAACACCGCGAATCAAATTTATGCCCGGAGGTCTTAGA
65 ATCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGACTTAGA
* * *
23914996 AATCATACCCGAAGGTCTTACAGAATTGATTGGGATAACACCGTAAGTCAAAAATAAAGAATCGA
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAAATAAAGAATCGA
*
23915061 TC-AGGATAACACCGCGAATCAAATTTATGCTCGGAGGACTTAGA
66 TCGA-GATAACACCGCGAATCAAATTTATGCCCGGAGGACTTAGA
* *
23915105 AATCATGCCCAGAGATCTTA
1 AATCATGCCCGGAGGTCTTA
23915125 GAGATTACGC
Statistics
Matches: 756, Mismatches: 122, Indels: 30
0.83 0.13 0.03
Matches are distributed among these distances:
106 95 0.13
107 1 0.00
108 1 0.00
109 299 0.40
110 357 0.47
111 3 0.00
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (109 bp):
AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAAATAAAGAATCGA
TCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGACTTAGA
Found at i:23914349 original size:22 final size:22
Alignment explanation
Indices: 23914319--23914361 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
23914309 CCACGAATCA
*
23914319 AAATTATGCCCGGAGGTCTTAG
1 AAATCATGCCCGGAGGTCTTAG
23914341 AAATCATGCCCGGAGGTCTTA
1 AAATCATGCCCGGAGGTCTTA
23914362 CAGAATTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (22 bp):
AAATCATGCCCGGAGGTCTTAG
Found at i:23914517 original size:219 final size:218
Alignment explanation
Indices: 23914123--23915114 Score: 1100
Period size: 219 Copynumber: 4.5 Consensus size: 218
23914113 GGTCATCCAG
* * * *
23914123 AATCATGCTCGGAGGTCTTACAGAATCGATTGGGATAACACCGCAAGTTAAAAATAAAAAATC-A
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAAATAAAGAATCGA
* * * * * *
23914187 TTC-AGGATAACACCGCGAATAGAATTTATGCCCGAAAGACTTAGAAATCATGCTCAAAGGTCTT
66 -TCGA-GATAACACCGCGAATCGAATTTATACCCGGAGGACTTAGAAATCATGCCCGAAGGTCTT
** * *
23914251 ACAGAATCGACTGGGATAACACCGTAAGTCGAAAGAT-AAGAAATCGATCGAAATAACACCACGA
129 ACAGAATCGACTGGGATAACACCACAAGTC-AAAAATAAAG-AATCGATCGAAATAACACCGCGA
* *
23914315 ATCAAAATTATGCCCGGAGGTCTTAGA
192 ATCAAATTTATGCCCGGAGGACTTAGA
* *
23914342 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACTGCAAGTCAAAAATAAAGAATCAA
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAAATAAAGAATCGA
* * **
23914407 TCGAGATAATACCGCGCATCGAATTTATACCTAGAGGACTTAGAAATCATGCCCGAAGGTCTTAC
66 TCGAGATAACACCGCGAATCGAATTTATACCCGGAGGACTTAGAAATCATGCCCGAAGGTCTTAC
* ** * *
23914472 AGAATCGATTGGGATAACACCACAAGTCAAAAATTAAAGAATCGATCGGGATAACATCGCCAATC
131 AGAATCGACTGGGATAACACCACAAGTCAAAAA-TAAAGAATCGATCGAAATAACACCGCGAATC
*
23914537 GAATTTAT----GGAGGACTTAGA
195 AAATTTATGCCCGGAGGACTTAGA
* * * * *
23914557 AATCATGCTCGGAGGTTTTACATAATTTATTGGGATAACACCACAAGTCAAAAGATAAAGAATCG
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAA-ATAAAGAATCG
* * * * * * *
23914622 ATCGGGATAACATCGTGAATCGAATTTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTCA
65 ATCGAGATAACACCGCGAATCGAATTTATACCCGGAGGACTTAGAAATCATGCCCGAAGGTCTTA
* * ** * * ** *
23914687 CAGAATTGACTGGAATAACATTACATGTCAAAAATAAAAAATCGATCGGGATAACATCGCGAATC
130 CAGAATCGACTGGGATAACACCACAAGTCAAAAATAAAGAATCGATCGAAATAACACCGCGAATC
* * * * *
23914752 GAATTTATACCTGAAAGACTTAGA
195 AAATTTATGCCCGGAGGACTTAGA
* * * * * * * *
23914776 AATCATACCTGAAGGTCTTACAGAATCGACTGGGATAACACTGCAAGTCGAAAGATAAAAAATCG
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTC-AAAAATAAAGAATCG
* * * ** * * * * *
23914841 ATTGAAATAATATTGCGAATCAAAATTATACCCGGAGGTCTTAGAAATTATGCCCGGAGGTCTTA
65 ATCGAGATAACACCGCGAATCGAATTTATACCCGGAGGACTTAGAAATCATGCCCGAAGGTCTTA
* ** *
23914906 CAAAATTTATTGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCGAAATAACACCGCGAAT
130 CAGAATCGACTGGGATAACACCACAAGTCAAAA-ATAAAGAATCGATCGAAATAACACCGCGAAT
*
23914971 CAAATTTATGCCCGGAGGTCTTAGA
194 CAAATTTATGCCCGGAGGACTTAGA
* * *
23914996 AATCATACCCGAAGGTCTTACAGAATTGATTGGGATAACACCGTAAGTCAAAAATAAAGAATCGA
1 AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAAATAAAGAATCGA
* * *
23915061 TC-AGGATAACACCGCGAATCAAATTTATGCTCGGAGGACTTAGAAATCATGCCC
66 TCGA-GATAACACCGCGAATCGAATTTATACCCGGAGGACTTAGAAATCATGCCC
23915115 AGAGATCTTA
Statistics
Matches: 648, Mismatches: 113, Indels: 24
0.83 0.14 0.03
Matches are distributed among these distances:
215 95 0.15
216 92 0.14
218 5 0.01
219 358 0.55
220 98 0.15
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (218 bp):
AATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCGCAAGTCAAAAATAAAGAATCGA
TCGAGATAACACCGCGAATCGAATTTATACCCGGAGGACTTAGAAATCATGCCCGAAGGTCTTAC
AGAATCGACTGGGATAACACCACAAGTCAAAAATAAAGAATCGATCGAAATAACACCGCGAATCA
AATTTATGCCCGGAGGACTTAGA
Found at i:23914891 original size:22 final size:22
Alignment explanation
Indices: 23914863--23914905 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
23914853 TTGCGAATCA
23914863 AAATTATACCCGGAGGTCTTAG
1 AAATTATACCCGGAGGTCTTAG
*
23914885 AAATTATGCCCGGAGGTCTTA
1 AAATTATACCCGGAGGTCTTA
23914906 CAAAATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (22 bp):
AAATTATACCCGGAGGTCTTAG
Found at i:23915749 original size:33 final size:33
Alignment explanation
Indices: 23915711--23916206 Score: 527
Period size: 33 Copynumber: 15.1 Consensus size: 33
23915701 TTTGAAACTC
* *
23915711 TAAAACTTCTTTTCG-GGCCAAATAAACTGGGCT
1 TAAAACTTCATTT-GAGGCCAGATAAACTGGGCT
* * * *
23915744 TAAAACCTCATTTGAGGTCAAATAAACTGGGCG
1 TAAAACTTCATTTGAGGCCAGATAAACTGGGCT
23915777 T-AAA-TATCA-TTGATGGCCAGATAAACTGGGCT
1 TAAAACT-TCATTTGA-GGCCAGATAAACTGGGCT
* * *
23915809 TAAATCTTTATTTAAGGCCAGATAAACTGGGCT
1 TAAAACTTCATTTGAGGCCAGATAAACTGGGCT
* * * *
23915842 TAAAGCCTCATTTGAGGTCAGATAAACTGGGTT
1 TAAAACTTCATTTGAGGCCAGATAAACTGGGCT
*
23915875 TAAAGCCTT-A-TTGATGGCCAGATAAACTGGGCT
1 TAAA-ACTTCATTTGA-GGCCAGATAAACTGGGCT
* *
23915908 TAAAACTTCATTTGAGGCCAGATAAATTGGGTT
1 TAAAACTTCATTTGAGGCCAGATAAACTGGGCT
* *
23915941 TAAAACATCA-TTGATGGCCAGATAAACTAGGCT
1 TAAAACTTCATTTGA-GGCCAGATAAACTGGGCT
* *
23915974 TAAAACTTCATTTGAGGCAAAATAAACTGGGCT
1 TAAAACTTCATTTGAGGCCAGATAAACTGGGCT
23916007 T-AAA-TGTCA-TTGATGGCCAGATAAACTGGGCT
1 TAAAACT-TCATTTGA-GGCCAGATAAACTGGGCT
*
23916039 TAAAACTTCATTTGAGGCTAGATAAACTGGGCT
1 TAAAACTTCATTTGAGGCCAGATAAACTGGGCT
*
23916072 TAAAGA-TTCA-TTAATGGCCAGATAAACTGGGCT
1 TAAA-ACTTCATTTGA-GGCCAGATAAACTGGGCT
*
23916105 TAAAACTTCATTTGAGACCAGATAAACTGGGCT
1 TAAAACTTCATTTGAGGCCAGATAAACTGGGCT
* * * *
23916138 TAAAGA-TTCA-TTAATGGCCAGATAAACTAGACA
1 TAAA-ACTTCATTTGA-GGCCAGATAAACTGGGCT
*
23916171 T-AATCTTCATTTGAGGCCAGATAAACTGGGCT
1 TAAAACTTCATTTGAGGCCAGATAAACTGGGCT
23916203 TAAA
1 TAAA
23916207 GTTTTTTTTT
Statistics
Matches: 388, Mismatches: 49, Indels: 52
0.79 0.10 0.11
Matches are distributed among these distances:
31 9 0.02
32 86 0.22
33 269 0.69
34 24 0.06
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (33 bp):
TAAAACTTCATTTGAGGCCAGATAAACTGGGCT
Found at i:23916075 original size:131 final size:130
Alignment explanation
Indices: 23915711--23916206 Score: 583
Period size: 131 Copynumber: 3.8 Consensus size: 130
23915701 TTTGAAACTC
* * * *
23915711 TAAAACTTCTTTTCG-GGCCAAATAAACTGGGCTTAAAACCTCATTTGA-GGTCAAATAAACTGG
1 TAAAACTTCATTT-GAGGCCAAATAAACTGGGCTT-AAAGCTCA-TTGATGGCCAGATAAACTGG
* * *
23915774 GCGTAAA-TATCA-TTGATGGCCAGATAAACTGGGCTTAAATCTTTATTTAA-GGCCAGATAAAC
63 GCTTAAACT-TCATTTGA-GGCCAGATAAACTGGGCTTAAAACTTCA-TTAATGGCCAGATAAAC
23915836 TGGGCT
125 TGGGCT
* * * * * *
23915842 TAAAGCCTCATTTGAGGTCAGATAAACTGGGTTTAAAGCCTTATTGATGGCCAGATAAACTGGGC
1 TAAAACTTCATTTGAGGCCAAATAAACTGGGCTTAAAG-CTCATTGATGGCCAGATAAACTGGGC
* * * * *
23915907 TTAAAACTTCATTTGAGGCCAGATAAATTGGGTTTAAAACATCATTGATGGCCAGATAAACTAGG
65 TT-AAACTTCATTTGAGGCCAGATAAACTGGGCTTAAAACTTCATTAATGGCCAGATAAACTGGG
23915972 CT
129 CT
*
23915974 TAAAACTTCATTTGAGGCAAAATAAACTGGGCTTAAATG-TCATTGATGGCCAGATAAACTGGGC
1 TAAAACTTCATTTGAGGCCAAATAAACTGGGCTTAAA-GCTCATTGATGGCCAGATAAACTGGGC
*
23916038 TTAAAACTTCATTTGAGGCTAGATAAACTGGGCTTAAAGA-TTCATTAATGGCCAGATAAACTGG
65 TT-AAACTTCATTTGAGGCCAGATAAACTGGGCTTAAA-ACTTCATTAATGGCCAGATAAACTGG
23916102 GCT
128 GCT
* * * * * *
23916105 TAAAACTTCATTTGAGACCAGATAAACTGGGCTTAAAGATTCATTAATGGCCAGATAAACTAGAC
1 TAAAACTTCATTTGAGGCCAAATAAACTGGGCTTAAAG-CTCATTGATGGCCAGATAAACTGGGC
* *
23916170 ATAATCTTCATTTGAGGCCAGATAAACTGGGCTTAAA
65 TTAAACTTCATTTGAGGCCAGATAAACTGGGCTTAAA
23916207 GTTTTTTTTT
Statistics
Matches: 314, Mismatches: 40, Indels: 22
0.84 0.11 0.06
Matches are distributed among these distances:
130 9 0.03
131 198 0.63
132 101 0.32
133 6 0.02
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (130 bp):
TAAAACTTCATTTGAGGCCAAATAAACTGGGCTTAAAGCTCATTGATGGCCAGATAAACTGGGCT
TAAACTTCATTTGAGGCCAGATAAACTGGGCTTAAAACTTCATTAATGGCCAGATAAACTGGGCT
Found at i:23916135 original size:230 final size:230
Alignment explanation
Indices: 23915726--23916163 Score: 627
Period size: 230 Copynumber: 1.9 Consensus size: 230
23915716 CTTCTTTTCG
*
23915726 GGCCAAATAAACTGGGCTTAAAACCTCATTTGAGGTCAAATAAACTGGGCGTAAATATCATTGAT
1 GGCCAAATAAACTAGGCTTAAAACCTCATTTGAGGTCAAATAAACTGGGCGTAAATATCATTGAT
* * * *
23915791 GGCCAGATAAACTGGGCTTAAATCTTTATTTAAGGCCAGATAAACTGGGCTTAAAGCCTCATTTG
66 GGCCAGATAAACTGGGCTTAAAACTTCATTTAAGGCCAGATAAACTGGGCTTAAAGACTCATTTA
* * * *
23915856 AGGTCAGATAAACTGGGTTTAAAGCCTTATTGATGGCCAGATAAACTGGGCTTAAA-ACTTCATT
131 AGGCCAGATAAACTGGGCTTAAAGACTTATTGATGACCAGATAAACTGGGCTTAAAGA-TTCA-T
*
23915920 TGA-GGCCAGATAAATTGGGTTTAAAACATCATTGAT
194 TAATGGCCAGATAAATTGGGTTTAAAACATCATTGAT
* * * *
23915956 GGCCAGATAAACTAGGCTTAAAACTTCATTTGAGG-CAAAATAAACTGGGCTTAAATGTCATTGA
1 GGCCAAATAAACTAGGCTTAAAACCTCATTTGAGGTC-AAATAAACTGGGCGTAAATATCATTGA
* * *
23916020 TGGCCAGATAAACTGGGCTTAAAACTTCATTTGAGGCTAGATAAACTGGGCTTAAAGATTCA-TT
65 TGGCCAGATAAACTGGGCTTAAAACTTCATTTAAGGCCAGATAAACTGGGCTTAAAGACTCATTT
23916084 AATGGCCAGATAAACTGGGCTTAAA-ACTTCATTTGA-GACCAGATAAACTGGGCTTAAAGATTC
130 AA-GGCCAGATAAACTGGGCTTAAAGACTT-A-TTGATGACCAGATAAACTGGGCTTAAAGATTC
23916147 ATTAATGGCCAGATAAA
192 ATTAATGGCCAGATAAA
23916164 CTAGACATAA
Statistics
Matches: 185, Mismatches: 17, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
229 10 0.05
230 170 0.92
231 5 0.03
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (230 bp):
GGCCAAATAAACTAGGCTTAAAACCTCATTTGAGGTCAAATAAACTGGGCGTAAATATCATTGAT
GGCCAGATAAACTGGGCTTAAAACTTCATTTAAGGCCAGATAAACTGGGCTTAAAGACTCATTTA
AGGCCAGATAAACTGGGCTTAAAGACTTATTGATGACCAGATAAACTGGGCTTAAAGATTCATTA
ATGGCCAGATAAATTGGGTTTAAAACATCATTGAT
Found at i:23917067 original size:20 final size:19
Alignment explanation
Indices: 23917030--23917074 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
23917020 ATTCATTTCT
23917030 TTCTTTTTTCTTTATTTTA
1 TTCTTTTTTCTTTATTTTA
23917049 TTCTTCTTTTCTTT-TTTT-
1 TTCTT-TTTTCTTTATTTTA
23917067 TT-TTTTTT
1 TTCTTTTTT
23917075 TTGCATCCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.16
17 2 0.08
18 2 0.08
19 9 0.36
20 8 0.32
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.84
Consensus pattern (19 bp):
TTCTTTTTTCTTTATTTTA
Found at i:23917086 original size:27 final size:27
Alignment explanation
Indices: 23917019--23917086 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
23917009 GCTTTCCACC
*
23917019 TATTCATTTCTTTCTTTTTTCTTTATTT
1 TATTCA-TCCTTTCTTTTTTCTTTATTT
* * *
23917047 TATTCTTCTTTTCTTTTTT-TTTTTTT
1 TATTCATCCTTTCTTTTTTCTTTATTT
*
23917073 TTTTGCATCCTTTC
1 TATT-CATCCTTTC
23917087 ACTGAGTAGA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 9 0.28
27 18 0.56
28 5 0.16
ACGTcount: A:0.07, C:0.16, G:0.01, T:0.75
Consensus pattern (27 bp):
TATTCATCCTTTCTTTTTTCTTTATTT
Found at i:23922811 original size:22 final size:22
Alignment explanation
Indices: 23922786--23922834 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
23922776 GGTTTTGATT
*
23922786 TTTGAGTTTGGAGATTTTAGGG
1 TTTGAGTTTGGAGATTTGAGGG
* * * *
23922808 TTTGGGTTTTGAGGTTTGAGGT
1 TTTGAGTTTGGAGATTTGAGGG
23922830 TTTGA
1 TTTGA
23922835 TTTAAGGATT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.37, T:0.49
Consensus pattern (22 bp):
TTTGAGTTTGGAGATTTGAGGG
Found at i:23922832 original size:15 final size:15
Alignment explanation
Indices: 23922785--23922834 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
23922775 GGGTTTTGAT
*
23922785 TTTTGA-GTTTGGAGA
1 TTTTGAGGTTT-GAGG
23922800 TTTT-AGGGTTTG-GG
1 TTTTGA-GGTTTGAGG
23922814 TTTTGAGGTTTGAGG
1 TTTTGAGGTTTGAGG
23922829 TTTTGA
1 TTTTGA
23922835 TTTAAGGATT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
14 12 0.40
15 14 0.47
16 4 0.13
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTGAGG
Found at i:23922853 original size:15 final size:15
Alignment explanation
Indices: 23922835--23922885 Score: 61
Period size: 13 Copynumber: 3.5 Consensus size: 15
23922825 GAGGTTTTGA
23922835 TTTAAGGATTTGGAT
1 TTTAAGGATTTGGAT
*
23922850 TTTAGGGATTTTGGAT
1 TTTAAGGA-TTTGGAT
*
23922866 TTT--GGGTTTGGAT
1 TTTAAGGATTTGGAT
23922879 TTTAAGG
1 TTTAAGG
23922886 GGTTTCAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 10 0.32
14 2 0.06
15 9 0.29
16 10 0.32
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (15 bp):
TTTAAGGATTTGGAT
Found at i:23922864 original size:16 final size:16
Alignment explanation
Indices: 23922843--23922948 Score: 85
Period size: 16 Copynumber: 6.6 Consensus size: 16
23922833 GATTTAAGGA
23922843 TTTGGATTTTAGGGAT
1 TTTGGATTTTAGGGAT
23922859 TTTGGATTTT-GGG--
1 TTTGGATTTTAGGGAT
*
23922872 TTTGGATTTTAAGGGGT
1 TTTGGATTTT-AGGGAT
**
23922889 TTCAGATTTTAGGGGAT
1 TTTGGATTTTA-GGGAT
* *
23922906 TTCGGATTTTTATGGG-G
1 TTTGGA-TTTTA-GGGAT
*
23922923 TTTGGATTTAAGGGAT
1 TTTGGATTTTAGGGAT
*
23922939 TTTGAATTTT
1 TTTGGATTTT
23922949 TTAGGGGTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
13 10 0.14
15 9 0.12
16 23 0.32
17 22 0.31
18 8 0.11
ACGTcount: A:0.18, C:0.02, G:0.31, T:0.49
Consensus pattern (16 bp):
TTTGGATTTTAGGGAT
Found at i:23922898 original size:17 final size:17
Alignment explanation
Indices: 23922876--23922925 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
23922866 TTTGGGTTTG
23922876 GATTTTAAGGGGTTTCA
1 GATTTTAAGGGGTTTCA
*
23922893 GATTTT-AGGGGATTTCG
1 GATTTTAAGGGG-TTTCA
*
23922910 GATTTTTATGGGGTTT
1 GA-TTTTAAGGGGTTT
23922926 GGATTTAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 5 0.18
17 12 0.43
18 7 0.25
19 4 0.14
ACGTcount: A:0.18, C:0.04, G:0.32, T:0.46
Consensus pattern (17 bp):
GATTTTAAGGGGTTTCA
Found at i:23922931 original size:34 final size:32
Alignment explanation
Indices: 23922827--23922958 Score: 98
Period size: 33 Copynumber: 4.2 Consensus size: 32
23922817 TGAGGTTTGA
* *
23922827 GGTTTTGA-TTTAAGGATTTGGA-TTTTA-GG
1 GGTTTGGATTTTAGGGATTTGGATTTTTATGG
* *
23922856 GATTTTGGATTTT-GGG-TTTGGA-TTTTAAGG
1 G-GTTTGGATTTTAGGGATTTGGATTTTTATGG
*
23922886 GGTTTCAGATTTTAGGGGATTTCGGATTTTTATGG
1 GGTTT-GGATTTTA-GGGATTT-GGATTTTTATGG
* *
23922921 GGTTTGGATTTAAGGGATTTTGAATTTTT-TAGG
1 GGTTTGGATTTTAGGGA-TTTGGATTTTTAT-GG
23922954 GGTTT
1 GGTTT
23922959 TAGAAACCTA
Statistics
Matches: 83, Mismatches: 9, Indels: 18
0.75 0.08 0.16
Matches are distributed among these distances:
29 15 0.18
30 16 0.19
31 3 0.04
32 4 0.05
33 21 0.25
34 12 0.14
35 12 0.14
ACGTcount: A:0.18, C:0.02, G:0.32, T:0.48
Consensus pattern (32 bp):
GGTTTGGATTTTAGGGATTTGGATTTTTATGG
Found at i:23924188 original size:26 final size:26
Alignment explanation
Indices: 23924159--23924230 Score: 85
Period size: 28 Copynumber: 2.7 Consensus size: 26
23924149 TTTCAAAAAG
*
23924159 GGGGGTCTGAGAGATTTTTTTTTAGA
1 GGGGATCTGAGAGATTTTTTTTTAGA
23924185 GGGGAT-TCGAGAGATTTTTTTTTTTAGA
1 GGGGATCT-GAGAGA--TTTTTTTTTAGA
*
23924213 GGGGATCCGAGAG-TTTTT
1 GGGGATCTGAGAGATTTTT
23924231 GAATGGGTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
25 6 0.15
26 11 0.28
28 23 0.57
ACGTcount: A:0.19, C:0.06, G:0.33, T:0.42
Consensus pattern (26 bp):
GGGGATCTGAGAGATTTTTTTTTAGA
Found at i:23924207 original size:28 final size:27
Alignment explanation
Indices: 23924173--23924230 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 27
23924163 GTCTGAGAGA
*
23924173 TTTTTTTTTAGAGGGGATTCGAGAGATT
1 TTTTTTTTTAGAGGGGATCCGAGAG-TT
23924201 TTTTTTTTTAGAGGGGATCCGAGAGTT
1 TTTTTTTTTAGAGGGGATCCGAGAGTT
23924228 TTT
1 TTT
23924231 GAATGGGTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.19, C:0.05, G:0.28, T:0.48
Consensus pattern (27 bp):
TTTTTTTTTAGAGGGGATCCGAGAGTT
Found at i:23924367 original size:10 final size:9
Alignment explanation
Indices: 23924354--23924393 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
23924344 TGTTTTTCTC
23924354 TTTTTTA-T
1 TTTTTTATT
23924362 TTTTTTATT
1 TTTTTTATT
*
23924371 TTTTTTGTT
1 TTTTTTATT
*
23924380 TTTTTTGTT
1 TTTTTTATT
23924389 TTTTT
1 TTTTT
23924394 ATAAAATTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
8 7 0.23
9 23 0.77
ACGTcount: A:0.05, C:0.00, G:0.05, T:0.90
Consensus pattern (9 bp):
TTTTTTATT
Found at i:23924436 original size:23 final size:25
Alignment explanation
Indices: 23924387--23924432 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
23924377 GTTTTTTTTG
23924387 TTTTTTTATAAAATTAATAATTATA
1 TTTTTTTATAAAATTAATAATTATA
23924412 TTTTTTT-T-AAATTAAT-ATTAT
1 TTTTTTTATAAAATTAATAATTAT
23924433 TATTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.24
23 8 0.38
24 1 0.05
25 7 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
TTTTTTTATAAAATTAATAATTATA
Found at i:23924438 original size:17 final size:18
Alignment explanation
Indices: 23924399--23924444 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
23924389 TTTTTATAAA
23924399 ATTAATAATT-ATATT-TT
1 ATTAA-AATTAATATTATT
* *
23924416 TTTTAAATTAATATTATT
1 ATTAAAATTAATATTATT
23924434 ATTAAAATTAA
1 ATTAAAATTAA
23924445 AATAGTAGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 4 0.17
17 8 0.35
18 11 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTAAAATTAATATTATT
Found at i:23933170 original size:2 final size:2
Alignment explanation
Indices: 23933154--23933186 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
23933144 CTTTCCCAAC
*
23933154 TA TA TA -A TA TG TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23933187 GTACTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:23938580 original size:48 final size:48
Alignment explanation
Indices: 23938475--23938651 Score: 198
Period size: 47 Copynumber: 3.8 Consensus size: 48
23938465 ATTAAACCTC
* * * **
23938475 TGCTTATAGAAGCTTTTTCAAAAT-GAAGTTTAAAGTTGTTGAGTC-T
1 TGCTTAGAGGAGCTTTTTCAAGATAGATTTTTAAAGTTGTTGAGTCTT
* * *
23938521 TGCTTAGAGGAGCTTTTTCGAGATAGATTTTTAAGGTTGTTGAATCTT
1 TGCTTAGAGGAGCTTTTTCAAGATAGATTTTTAAAGTTGTTGAGTCTT
* * * *
23938569 TGCTTAGAGGAGCTTTTTCAACATA-AATTTTAAAGTTGTTGAGCCTC
1 TGCTTAGAGGAGCTTTTTCAAGATAGATTTTTAAAGTTGTTGAGTCTT
* * *
23938616 TACTTAGATGAGCTTTTTCAAGATGGATTTTTAAAG
1 TGCTTAGAGGAGCTTTTTCAAGATAGATTTTTAAAG
23938652 ATAAATTTTA
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
46 20 0.19
47 55 0.51
48 33 0.31
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (48 bp):
TGCTTAGAGGAGCTTTTTCAAGATAGATTTTTAAAGTTGTTGAGTCTT
Found at i:23938583 original size:94 final size:95
Alignment explanation
Indices: 23938475--23938649 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 95
23938465 ATTAAACCTC
* * * *
23938475 TGCTTATAGAAGCTTTTTCAAAATGAAGTTTAAAGTTGTTGAGTCT-TGCTTAGAGGAGCTTTTT
1 TGCTTAGAGAAGCTTTTTCAAAATAAAGTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTT
*
23938539 CGAGATAGATTTTTAAGGTTGTTGAATCTT
66 CAAGATAGATTTTTAAGGTTGTTGAATCTT
* * * *
23938569 TGCTTAGAGGAGCTTTTTCAACATAAATTTTAAAGTTGTTGAGCCTCTACTTAGATGAGCTTTTT
1 TGCTTAGAGAAGCTTTTTCAAAATAAAGTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTT
*
23938634 CAAGATGGATTTTTAA
66 CAAGATAGATTTTTAA
23938650 AGATAAATTT
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
94 40 0.57
95 30 0.43
ACGTcount: A:0.27, C:0.10, G:0.21, T:0.42
Consensus pattern (95 bp):
TGCTTAGAGAAGCTTTTTCAAAATAAAGTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTT
CAAGATAGATTTTTAAGGTTGTTGAATCTT
Found at i:23938741 original size:43 final size:42
Alignment explanation
Indices: 23938653--23938880 Score: 144
Period size: 44 Copynumber: 5.3 Consensus size: 42
23938643 TTTTTAAAGA
* * * * * *
23938653 TAAATTTTAAAATTGTTGAGTCTCTGCTT-AGCGAAGCCTTTTT
1 TAAATTTTAAAAGTGTTAAGCCTTTGCTTAAGTG-AGCC-TCTT
* * *
23938696 TAAATTTTAAAAGCTGTTAAGCCTCTACTTGAGTGAGCCTCTT
1 TAAATTTTAAAAG-TGTTAAGCCTTTGCTTAAGTGAGCCTCTT
* * * *
23938739 TAAATTTTCAAAAGTCATTGAGCCTTTGC-TCAGATGAG-CTTTT
1 TAAATTTT-AAAAGT-GTTAAGCCTTTGCTTAAG-TGAGCCTCTT
*
23938782 TAAATTTTTAAAGTTGTTAAGCCTTTGCTTAAAG-GAGCCTCTT
1 TAAATTTTAAAAG-TGTTAAGCCTTTGCTT-AAGTGAGCCTCTT
* * * *
23938825 TAAATTTTTAAAAGTAGTTGAGTCTCTGCTTAAAG-GAG-CTTTT
1 TAAA-TTTTAAAAGT-GTTAAGCCTTTGCTT-AAGTGAGCCTCTT
23938868 TAAATTTTCAAAA
1 TAAATTTT-AAAA
23938881 ATGTCGTTAA
Statistics
Matches: 151, Mismatches: 22, Indels: 24
0.77 0.11 0.12
Matches are distributed among these distances:
42 22 0.15
43 62 0.41
44 64 0.42
45 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (42 bp):
TAAATTTTAAAAGTGTTAAGCCTTTGCTTAAGTGAGCCTCTT
Found at i:23938752 original size:44 final size:42
Alignment explanation
Indices: 23938694--23938880 Score: 155
Period size: 44 Copynumber: 4.3 Consensus size: 42
23938684 CGAAGCCTTT
* *
23938694 TTTAAATTTTAAAAGCT-GTTAAGCCTCTACTT-GAGTGAGCCTC
1 TTTAAATTTTAAAAG-TAGTTAAGCCTCTGCTTAAAG-GAG-CTC
* * * * * *
23938737 TTTAAATTTTCAAAAGTCA-TTGAGCCTTTGCTCAGATGAGCTT
1 TTTAAATTTT-AAAAGT-AGTTAAGCCTCTGCTTAAAGGAGCTC
* * *
23938780 TTTAAATTTTTAAAGTTGTTAAGCCTTTGCTTAAAGGAGCCTC
1 TTTAAATTTTAAAAGTAGTTAAGCCTCTGCTTAAAGGAG-CTC
* * *
23938823 TTTAAATTTTTAAAAGTAGTTGAGTCTCTGCTTAAAGGAGCTT
1 TTTAAA-TTTTAAAAGTAGTTAAGCCTCTGCTTAAAGGAGCTC
23938866 TTTAAATTTTCAAAA
1 TTTAAATTTT-AAAA
23938881 ATGTCGTTAA
Statistics
Matches: 117, Mismatches: 19, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
42 26 0.22
43 43 0.37
44 46 0.39
45 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (42 bp):
TTTAAATTTTAAAAGTAGTTAAGCCTCTGCTTAAAGGAGCTC
Found at i:23938800 original size:86 final size:86
Alignment explanation
Indices: 23938692--23938880 Score: 238
Period size: 86 Copynumber: 2.2 Consensus size: 86
23938682 AGCGAAGCCT
*
23938692 TTTTTAAATTTTAAAAGCTGTTAAGCCTCTACTT-GAGTGAGCCTCTTTAAATTTTCAAAAGTCA
1 TTTTTAAATTTTAAAAGCTGTTAAGCCTCTACTTAAAG-GAGCCTCTTTAAATTTTCAAAAGT-A
* * *
23938756 -TTGAGCCTTTGCTCAGATGAGC
64 GTTGAGCCTCTGCTCAAAGGAGC
* * * * *
23938778 TTTTTAAATTTTTAAAGTTGTTAAGCCTTTGCTTAAAGGAGCCTCTTTAAATTTTTAAAAGTAGT
1 TTTTTAAATTTTAAAAGCTGTTAAGCCTCTACTTAAAGGAGCCTCTTTAAATTTTCAAAAGTAGT
* *
23938843 TGAGTCTCTGCTTAAAGGAGC
66 TGAGCCTCTGCTCAAAGGAGC
23938864 TTTTTAAATTTTCAAAA
1 TTTTTAAATTTT-AAAA
23938881 ATGTCGTTAA
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
85 1 0.01
86 82 0.93
87 5 0.06
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (86 bp):
TTTTTAAATTTTAAAAGCTGTTAAGCCTCTACTTAAAGGAGCCTCTTTAAATTTTCAAAAGTAGT
TGAGCCTCTGCTCAAAGGAGC
Found at i:23940281 original size:90 final size:90
Alignment explanation
Indices: 23940128--23940308 Score: 344
Period size: 90 Copynumber: 2.0 Consensus size: 90
23940118 AAACCATAAA
23940128 TAATTCAAAAATAATAAAAAAGTAAGAAAAAAAGTTTTTTATTCGACGATGAGATTCAAAGGTAC
1 TAATTCAAAAATAATAAAAAAGTAAGAAAAAAAGTTTTTTATTCGACGATGAGATTCAAAGGTAC
* *
23940193 TCCGAGTAGTGATACCTACGAAATC
66 TCCAAATAGTGATACCTACGAAATC
23940218 TAATTCAAAAATAATAAAAAAGTAAGAAAAAAAGTTTTTTATTCGACGATGAGATTCAAAGGTAC
1 TAATTCAAAAATAATAAAAAAGTAAGAAAAAAAGTTTTTTATTCGACGATGAGATTCAAAGGTAC
23940283 TCCAAATAGTGATACCTACGAAATC
66 TCCAAATAGTGATACCTACGAAATC
23940308 T
1 T
23940309 TTAGGTGAGA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.27
Consensus pattern (90 bp):
TAATTCAAAAATAATAAAAAAGTAAGAAAAAAAGTTTTTTATTCGACGATGAGATTCAAAGGTAC
TCCAAATAGTGATACCTACGAAATC
Found at i:23943361 original size:64 final size:64
Alignment explanation
Indices: 23943287--23943478 Score: 165
Period size: 63 Copynumber: 3.0 Consensus size: 64
23943277 AAAATTGAAT
*
23943287 GGGATTATTGAAGGCATTTTTCGCTAAAAAAACCTTCAATAATCTATTCAAAAAATTTTGGAGA
1 GGGATTATTGAAGGCATTTTTAGCTAAAAAAACCTTCAATAATCTATTCAAAAAATTTTGGAGA
** * * * ** * * * *
23943351 TTGATTATTGAAGACTTTTTTTG-TCAAAAATGCTTTTAATAATCT-CTCATAAAAATTTT-GAA
1 GGGATTATTGAAGGCATTTTTAGCT-AAAAAAACCTTCAATAATCTATTCA-AAAAATTTTGGAG
23943413 A
64 A
* * ** * * *
23943414 GGGATTACTAAAGGTGTTTTTAGCCAAAAACACCTTCAATAATCTATACAAAAAATTTTAGGAGA
1 GGGATTATTGAAGGCATTTTTAGCTAAAAAAACCTTCAATAATCTATTCAAAAAATTTT-GGAGA
23943479 AGGCATTTTT
Statistics
Matches: 95, Mismatches: 27, Indels: 11
0.71 0.20 0.08
Matches are distributed among these distances:
63 47 0.49
64 45 0.47
65 3 0.03
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (64 bp):
GGGATTATTGAAGGCATTTTTAGCTAAAAAAACCTTCAATAATCTATTCAAAAAATTTTGGAGA
Found at i:23950086 original size:28 final size:28
Alignment explanation
Indices: 23950051--23950151 Score: 166
Period size: 28 Copynumber: 3.6 Consensus size: 28
23950041 AAAAAAAAAT
*
23950051 CACTAACACACAACTAACTTCCATAAAC
1 CACTAACACACATCTAACTTCCATAAAC
*
23950079 CATTAACACACATCTAACTTCCATAAAC
1 CACTAACACACATCTAACTTCCATAAAC
*
23950107 CACTAACAAACATCTAACTTCCATAAAC
1 CACTAACACACATCTAACTTCCATAAAC
*
23950135 TACTAACACACATCTAA
1 CACTAACACACATCTAA
23950152 TTTTTCATTA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.22
Consensus pattern (28 bp):
CACTAACACACATCTAACTTCCATAAAC
Found at i:23959571 original size:2 final size:2
Alignment explanation
Indices: 23959564--23959610 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
23959554 GAGGACCATT
23959564 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23959606 TA TA T
1 TA TA T
23959611 TGCAAAACAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:23970589 original size:89 final size:89
Alignment explanation
Indices: 23970426--23970604 Score: 288
Period size: 89 Copynumber: 2.0 Consensus size: 89
23970416 AATAATAATT
* *
23970426 GGGCTAGACTAATACCAAAGCCAATCAGTTTATTAAGAGACTAATTAGTAAAAGAAAAAGGGCTG
1 GGGCTAAACTAATACCAAAGCCAACCAGTTTATTAAGAGACTAATTAGTAAAAGAAAAAGGGCTG
*
23970491 AGTTATTAAATGAAAGAAAACCTA
66 AATTATTAAATGAAAGAAAACCTA
* *
23970515 GGGCTAAACTAATACCAAAGCTC-ACCAGTTTATTAAGAGACTAATTAGTAAAAGAAAAAGTGTT
1 GGGCTAAACTAATACCAAAGC-CAACCAGTTTATTAAGAGACTAATTAGTAAAAGAAAAAGGGCT
*
23970579 GAATTGTTAAATGAAAGAAAACCTA
65 GAATTATTAAATGAAAGAAAACCTA
23970604 G
1 G
23970605 TTATAGAGAA
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
89 82 0.99
90 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.23
Consensus pattern (89 bp):
GGGCTAAACTAATACCAAAGCCAACCAGTTTATTAAGAGACTAATTAGTAAAAGAAAAAGGGCTG
AATTATTAAATGAAAGAAAACCTA
Found at i:23972217 original size:48 final size:47
Alignment explanation
Indices: 23972129--23972220 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 47
23972119 TAAACGAATG
* ** *
23972129 ATAATGATGATTTATGATGATTTTAAAGATTGATCCATGATTTGTAT
1 ATAAAGATGATTTACAATGATTTTAAAGACTGATCCATGATTTGTAT
*
23972176 ATAAAGATGATTTACAATGATTTTTAATGACTGATCCATGATTTG
1 ATAAAGATGATTTACAATGA-TTTTAAAGACTGATCCATGATTTG
23972221 GTTTGATTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 17 0.44
48 22 0.56
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (47 bp):
ATAAAGATGATTTACAATGATTTTAAAGACTGATCCATGATTTGTAT
Found at i:23987222 original size:2 final size:2
Alignment explanation
Indices: 23987215--23987244 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
23987205 GCATTTTCAT
*
23987215 TA TA TA TA TA TA TA TA TA TA GA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23987245 AGTTTCAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:23991757 original size:3 final size:3
Alignment explanation
Indices: 23991740--23991773 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
23991730 TATCTTGTAA
23991740 TAT TA- TAT ATAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT T
23991774 CTTAGATTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 24 0.83
4 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:24003499 original size:19 final size:20
Alignment explanation
Indices: 24003446--24003491 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
24003436 TGAATTTAAT
* *
24003446 TTAATTTTATATTAAATTTGA
1 TTAATTATAT-TTTAATTTGA
24003467 TTAATTATATTTTAATTT-A
1 TTAATTATATTTTAATTTGA
24003486 TTAATT
1 TTAATT
24003492 GATTTTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 7 0.30
20 7 0.30
21 9 0.39
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTAATTATATTTTAATTTGA
Found at i:24003548 original size:25 final size:26
Alignment explanation
Indices: 24003520--24003588 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 26
24003510 TAATATTTAA
24003520 TTATAATTATAATTTTTTTA-TAATT
1 TTATAATTATAATTTTTTTATTAATT
* *
24003545 TTATAA-AAGTAAATTTTTTATTAATT
1 TTATAATTA-TAATTTTTTTATTAATT
* *
24003571 TTAAAATTTATTATTTTT
1 TTATAA-TTATAATTTTT
24003589 AATTATAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
24 1 0.03
25 16 0.47
26 10 0.29
27 6 0.18
28 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (26 bp):
TTATAATTATAATTTTTTTATTAATT
Found at i:24003597 original size:22 final size:23
Alignment explanation
Indices: 24003565--24003625 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
24003555 AAATTTTTTA
*
24003565 TTAATTTTAAA-ATTTATTATTT
1 TTAATTATAAATATTTATTATTT
* *
24003587 TTAATTATAAATTTTTATTA-TA
1 TTAATTATAAATATTTATTATTT
*
24003609 CTAATTTATAAATATTT
1 TTAA-TTATAAATATTT
24003626 TTAATAACAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
22 14 0.44
23 18 0.56
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (23 bp):
TTAATTATAAATATTTATTATTT
Found at i:24009582 original size:501 final size:495
Alignment explanation
Indices: 24008915--24009812 Score: 1427
Period size: 501 Copynumber: 1.8 Consensus size: 495
24008905 AATTTTGTAA
* * * **
24008915 TTAACTTTTGAAATTTTTTTATATAAAATTTAATTAGTGGTTTTGAAATTTTATAATTAAAAAAA
1 TTAACTTTTGAAATTTTTTTAGATAAAATCTAATTAGAGGGATTGAAATTTTATAATTAAAAAAA
*
24008980 GAGATTAATAATTTAATATAATATATATAAAGATTTTAGATAAAAAATTTTGATAATTTTTTTTT
66 GAGATTAATAATTTAATATAATATATATAAAGATTTTAGATAAAAAATTTTGATAATATTTTTTT
* *
24009045 GTATAAGTTAGATGAAAAATAATTAAAATTAAATATTATATTTTGATTGTGTTATATATTAATTT
131 GTATAAGTTAGACGAAAAATAATTAAAATTAAATATTATATTTTGATTGTGTTAGATATTAATTT
* * *
24009110 ATAATTTTGTATCTG-AATTTTA-AATTTTTTTGTTGTTTTGATATTTATATTATTGTTAATTCT
196 ATAATTTTGTATATGAAATTTAATAATTTTTTTGTTGTTTTGATATTTATATTATTGTCAATTCT
*
24009173 TTTGATATTAGATTAATTCTTGTTATTTTTGT-GTAATTATTGAAGATTGTGTTTATTATAT-AA
261 TTTGATATTAGATTAATTCTTGTTATTTTTGTAGTAATTATTGAAGATTGTATTTATTATATCAA
24009236 T-TATTGAAAGTTATTTGTGAT-AAAAAATTTTATATCAATT-AGTGTATCAAAAAGATTAAGTT
326 TAT-TTGAAAGTTATTTGTGATAAAAAAATTTTATATCAATTCAGTGTAT-AAAAAGATTAAGTT
24009298 ACTTAATAAATTAGCATTTTATGATTTATTACTCTTATTAAGATTAAAAACTAAAAAATAAAAAA
389 ACTTAATAAATTAGCATTTTATGATTTATTACTCTTATTAAGATTAAAAACTAAAAAATAAAAAA
24009363 TATAGGTTTGAAAATTTTATTAAAATATAAGTTTGAAAATTT
454 TATAGGTTTGAAAATTTTATTAAAATATAAGTTTGAAAATTT
* *
24009405 TTAATTTTTGAATTTTCTTTTAGATAAAATCTAATTAGAGGGATTGAAGA-TTTATAATTAAAAA
1 TTAACTTTTGAAATTT-TTTTAGATAAAATCTAATTAGAGGGATTGAA-ATTTTATAATT----A
*
24009469 AAATAAAGAGATTAATAATTTAATATGATATATATATATATAGATATTTTAGATAAAAATTTTTG
60 AAA-AAAGAGATTAATAATTTAATAT-A-ATATATATA-A-AG--ATTTTAGATAAAAAATTTTG
*
24009534 ATAA-ATTTTTTTGTATAAGTTAGACGAAAATTAATTAAAATTAAATATTATATTTTGATTGTGT
118 ATAATATTTTTTTGTATAAGTTAGACGAAAAATAATTAAAATTAAATATTATATTTTGATTGTGT
24009598 TAGATATTAATTTATAATTTTGTATATGAAATTTAATAATTTTTTTGTTGTTTTGATATTTATAT
183 TAGATATTAATTTATAATTTTGTATATGAAATTTAATAATTTTTTTGTTGTTTTGATATTTATAT
*
24009663 TGTTGTCAATTCTTTTGATATTAGATTAATTCTTGTTATTTTTGTAGTAATTATTGAAGATTGTA
248 TATTGTCAATTCTTTTGATATTAGATTAATTCTTGTTATTTTTGTAGTAATTATTGAAGATTGTA
*
24009728 TTTATTATATCAATATTTGAAAGTTATTTGTGATAAAAAAATTTTATATCAATTCAGTGTATTAA
313 TTTATTATATCAATATTTGAAAGTTATTTGTGATAAAAAAATTTTATATCAATTCAGTGTATAAA
*
24009793 AAGATTAAGTTATTTAATAA
378 AAGATTAAGTTACTTAATAA
24009813 TATTTCTTAA
Statistics
Matches: 369, Mismatches: 19, Indels: 24
0.90 0.05 0.06
Matches are distributed among these distances:
490 14 0.04
491 35 0.09
492 1 0.00
495 4 0.01
496 22 0.06
497 1 0.00
498 9 0.02
499 1 0.00
500 2 0.01
501 83 0.22
502 29 0.08
503 71 0.19
504 28 0.08
505 21 0.06
506 41 0.11
507 7 0.02
ACGTcount: A:0.39, C:0.02, G:0.10, T:0.48
Consensus pattern (495 bp):
TTAACTTTTGAAATTTTTTTAGATAAAATCTAATTAGAGGGATTGAAATTTTATAATTAAAAAAA
GAGATTAATAATTTAATATAATATATATAAAGATTTTAGATAAAAAATTTTGATAATATTTTTTT
GTATAAGTTAGACGAAAAATAATTAAAATTAAATATTATATTTTGATTGTGTTAGATATTAATTT
ATAATTTTGTATATGAAATTTAATAATTTTTTTGTTGTTTTGATATTTATATTATTGTCAATTCT
TTTGATATTAGATTAATTCTTGTTATTTTTGTAGTAATTATTGAAGATTGTATTTATTATATCAA
TATTTGAAAGTTATTTGTGATAAAAAAATTTTATATCAATTCAGTGTATAAAAAGATTAAGTTAC
TTAATAAATTAGCATTTTATGATTTATTACTCTTATTAAGATTAAAAACTAAAAAATAAAAAATA
TAGGTTTGAAAATTTTATTAAAATATAAGTTTGAAAATTT
Found at i:24012357 original size:6 final size:6
Alignment explanation
Indices: 24012304--24012358 Score: 74
Period size: 6 Copynumber: 9.2 Consensus size: 6
24012294 TAAGTCCAGA
* * * *
24012304 TGATGA TGATAG TGATAG TGATAG TGATGG TGATGG TGATGG TGATGG
1 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG
24012352 TGATGG T
1 TGATGG T
24012359 ACGAATTTTG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.24, C:0.00, G:0.42, T:0.35
Consensus pattern (6 bp):
TGATGG
Found at i:24012789 original size:18 final size:18
Alignment explanation
Indices: 24012702--24012790 Score: 51
Period size: 18 Copynumber: 5.1 Consensus size: 18
24012692 TATGGTTATT
24012702 ATCCACCTCAAATGTATC
1 ATCCACCTCAAATGTATC
** *
24012720 ATTTACCACAAATGTATC
1 ATCCACCTCAAATGTATC
** *
24012738 CCCCACC-CATAA-ATAT-
1 ATCCACCTCA-AATGTATC
* *
24012754 AT-CATCCTTAAATATATC
1 ATCCA-CCTCAAATGTATC
*
24012772 CTCCACCTCAAATGTATC
1 ATCCACCTCAAATGTATC
24012790 A
1 A
24012791 AGAACAAAGG
Statistics
Matches: 50, Mismatches: 15, Indels: 12
0.65 0.19 0.16
Matches are distributed among these distances:
15 2 0.04
16 4 0.08
17 10 0.20
18 32 0.64
19 2 0.04
ACGTcount: A:0.36, C:0.31, G:0.03, T:0.29
Consensus pattern (18 bp):
ATCCACCTCAAATGTATC
Found at i:24014951 original size:64 final size:64
Alignment explanation
Indices: 24014845--24014972 Score: 213
Period size: 64 Copynumber: 2.0 Consensus size: 64
24014835 TTGAGATAGA
* * *
24014845 AAATTTTGAATCGGCTCTTCAAGTAAAGTCATCATACATCAATTAGATATAATTAATATATGAT
1 AAATTTTGAACCGACGCTTCAAGTAAAGTCATCATACATCAATTAGATATAATTAATATATGAT
24014909 AAATTTTGAACCGACGCTTCAAGTAAAGTCATCATATC-TCAATTAGATATAATTAATATATGAT
1 AAATTTTGAACCGACGCTTCAAGTAAAGTCATCATA-CATCAATTAGATATAATTAATATATGAT
24014973 GAGGTAAGTA
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 59 0.98
65 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (64 bp):
AAATTTTGAACCGACGCTTCAAGTAAAGTCATCATACATCAATTAGATATAATTAATATATGAT
Found at i:24024548 original size:2 final size:2
Alignment explanation
Indices: 24024541--24024571 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
24024531 CCGATTGGTT
*
24024541 TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24024572 TGAGCAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:24026180 original size:2 final size:2
Alignment explanation
Indices: 24026173--24026203 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
24026163 CCTACTTAAT
24026173 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24026204 TAAAGAAGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24043203 original size:8 final size:8
Alignment explanation
Indices: 24043192--24043238 Score: 58
Period size: 8 Copynumber: 5.8 Consensus size: 8
24043182 AAAATATGTA
24043192 TATATATG
1 TATATATG
24043200 TATAGTATG
1 TATA-TATG
*
24043209 TATGTATG
1 TATATATG
* *
24043217 TATTTATT
1 TATATATG
24043225 TATATATG
1 TATATATG
24043233 TATATA
1 TATATA
24043239 CATCTTATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
8 26 0.79
9 7 0.21
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (8 bp):
TATATATG
Found at i:24043848 original size:21 final size:21
Alignment explanation
Indices: 24043805--24043844 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
24043795 TTATTATTTA
24043805 TATTTATTAAAATATAAATAT
1 TATTTATTAAAATATAAATAT
*
24043826 TATTTATTAATATA-AAATA
1 TATTTATTAAAATATAAATA
24043845 ATTAATCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TATTTATTAAAATATAAATAT
Found at i:24044196 original size:21 final size:21
Alignment explanation
Indices: 24044172--24044213 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
24044162 TGTGTAAGTT
24044172 TTTTTGTAATATCATTATCTA
1 TTTTTGTAATATCATTATCTA
24044193 TTTTTGTAATATCATTATCTA
1 TTTTTGTAATATCATTATCTA
24044214 CATGTCTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.05, T:0.57
Consensus pattern (21 bp):
TTTTTGTAATATCATTATCTA
Found at i:24048629 original size:21 final size:21
Alignment explanation
Indices: 24048605--24048645 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24048595 AATAAAAAAT
* *
24048605 TTGATTTAATATTTAAATTAA
1 TTGATATAATATTGAAATTAA
*
24048626 TTGATATATTATTGAAATTA
1 TTGATATAATATTGAAATTA
24048646 TGTTTGAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (21 bp):
TTGATATAATATTGAAATTAA
Found at i:24053192 original size:23 final size:23
Alignment explanation
Indices: 24053159--24053202 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
24053149 AAACAGCTCT
* *
24053159 CTCTTATGAACACAATGATATCC
1 CTCTTAAGAACACAATAATATCC
*
24053182 CTCTTAAGAACATAATAATAT
1 CTCTTAAGAACACAATAATAT
24053203 ACCACTCCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (23 bp):
CTCTTAAGAACACAATAATATCC
Found at i:24054203 original size:16 final size:17
Alignment explanation
Indices: 24054169--24054214 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
24054159 GGACGTAAAG
24054169 CAATAAACACA-ATAACA
1 CAATAAACA-ATATAACA
*
24054186 C-ATAAACAATATATCA
1 CAATAAACAATATAACA
24054202 CAATAAAC-ATATA
1 CAATAAACAATATA
24054215 GTATTAGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 1 0.04
16 18 0.69
17 7 0.27
ACGTcount: A:0.61, C:0.20, G:0.00, T:0.20
Consensus pattern (17 bp):
CAATAAACAATATAACA
Found at i:24068115 original size:2 final size:2
Alignment explanation
Indices: 24068108--24068136 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
24068098 GCCCTTTAAG
24068108 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24068137 AACATTGTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24070159 original size:6 final size:6
Alignment explanation
Indices: 24070135--24070176 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
24070125 GTAAGTTCAT
*
24070135 TTTAT- TTTTTA TTTAATA TTTATA TTTATA TTTTATA TTTAT
1 TTTATA TTTATA TTT-ATA TTTATA TTTATA -TTTATA TTTAT
24070177 TTATTTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 4 0.12
6 17 0.53
7 11 0.34
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTATA
Found at i:24070173 original size:26 final size:26
Alignment explanation
Indices: 24070133--24070209 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
24070123 GAGTAAGTTC
* *
24070133 ATTT-TATTTTTTATTTAATATTTAT
1 ATTTATATTTTATATTTATTATTTAT
24070158 ATTTATATTTTATATTTATTTATTT-T
1 ATTTATATTTTATATTTA-TTATTTAT
* *
24070184 -TTGTATATTATGTATTTATTATTTAT
1 ATT-TATATTTTATATTTATTATTTAT
24070210 TATTATTATT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
25 12 0.27
26 27 0.61
27 5 0.11
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (26 bp):
ATTTATATTTTATATTTATTATTTAT
Found at i:24070176 original size:13 final size:13
Alignment explanation
Indices: 24070133--24070176 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
24070123 GAGTAAGTTC
*
24070133 ATTT-TATTTTTT
1 ATTTATATTTTAT
24070145 ATTTA-ATATTTAT
1 ATTTATAT-TTTAT
24070158 ATTTATATTTTAT
1 ATTTATATTTTAT
24070171 ATTTAT
1 ATTTAT
24070177 TTATTTTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 6 0.21
13 20 0.71
14 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
ATTTATATTTTAT
Found at i:24070179 original size:4 final size:4
Alignment explanation
Indices: 24070135--24070332 Score: 79
Period size: 4 Copynumber: 51.8 Consensus size: 4
24070125 GTAAGTTCAT
*
24070135 TTTA TTT- TTTA TTTA -ATA TTTA --TA TTTA TATT- TTATA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TT-TA TTTA TTTA
* *
24070180 TTTT TTGTA TATTA TGTA TTTA -TTA TTTA -TTA -TTA -TTA TTTA TTAATA
1 TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA
* * * * * *
24070228 TATA TTTA TTTT TTTA ATTA TTTA TCTG TTAATA TATA TTTA -TTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA
* * *
24070276 TTTA TCTA TTTA TATA -TTA -TTA TTTA TCTA -TTA -TTA -TTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* *
24070318 TTTA TCTA ATTA TTT
1 TTTA TTTA TTTA TTT
24070333 TCTTTTAATT
Statistics
Matches: 148, Mismatches: 28, Indels: 36
0.70 0.13 0.17
Matches are distributed among these distances:
2 2 0.01
3 40 0.27
4 91 0.61
5 9 0.06
6 6 0.04
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:24070206 original size:7 final size:7
Alignment explanation
Indices: 24070136--24070322 Score: 106
Period size: 7 Copynumber: 26.1 Consensus size: 7
24070126 TAAGTTCATT
*
24070136 TTATTTT
1 TTATTTA
24070143 TTATTTA
1 TTATTTA
*
24070150 ATATTTA
1 TTATTTA
24070157 -TATTTA
1 TTATTTA
24070163 -TATTT-
1 TTATTTA
24070168 TATATTTA
1 T-TATTTA
*
24070176 TTTATTTTT
1 -TTA-TTTA
24070185 TGTATATTA
1 T-TAT-TTA
24070194 TGTATTTA
1 T-TATTTA
24070202 TTATTTA
1 TTATTTA
24070209 TTA-TTA
1 TTATTTA
24070215 TTATTTA
1 TTATTTA
*
24070222 TTA-ATA
1 TTATTTA
24070228 TATATTTA
1 T-TATTTA
*
24070236 TTTTTTTAA
1 -TTATTT-A
24070245 TTATTTA
1 TTATTTA
*
24070252 TCT-GTTA
1 T-TATTTA
* *
24070259 ATATATA
1 TTATTTA
24070266 TT-TATTA
1 TTAT-TTA
24070273 TTATTTA
1 TTATTTA
24070280 TCTATTTA
1 T-TATTTA
24070288 -TATATTA
1 TTAT-TTA
24070295 TTATTTA
1 TTATTTA
24070302 TCTA-TTA
1 T-TATTTA
24070309 TTA-TTA
1 TTATTTA
24070315 TTATTTA
1 TTATTTA
24070322 T
1 T
24070323 CTAATTATTT
Statistics
Matches: 145, Mismatches: 14, Indels: 42
0.72 0.07 0.21
Matches are distributed among these distances:
6 33 0.23
7 65 0.45
8 32 0.22
9 15 0.10
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (7 bp):
TTATTTA
Found at i:24070212 original size:3 final size:3
Alignment explanation
Indices: 24070189--24070319 Score: 66
Period size: 3 Copynumber: 38.3 Consensus size: 3
24070179 ATTTTTTGTA
*
24070189 TAT TAT GTATT TAT TATT TAT TAT TAT TATT TAT TAA TAT ATATT TAT
1 TAT TAT -TA-T TAT TA-T TAT TAT TAT TA-T TAT TAT TAT -TA-T TAT
* * *
24070237 T-T TTT TAAT TATT TAT CTGT TAA TAT ATATT TAT TAT TATT TAT CTATT
1 TAT TAT T-AT TA-T TAT -TAT TAT TAT -TA-T TAT TAT TA-T TAT -TA-T
24070286 TAT ATAT TAT TATT TAT CTAT TAT TAT TAT TAT T
1 TAT -TAT TAT TA-T TAT -TAT TAT TAT TAT TAT T
24070320 TATCTAATTA
Statistics
Matches: 103, Mismatches: 7, Indels: 36
0.71 0.05 0.25
Matches are distributed among these distances:
2 2 0.02
3 56 0.54
4 41 0.40
5 4 0.04
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:24071193 original size:14 final size:16
Alignment explanation
Indices: 24071157--24071202 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
24071147 TGTTTAGTAT
24071157 TTTATTTTTATTTTTTCC
1 TTTATTTTTA--TTTTCC
24071175 TTTA-TTTTATTTT-C
1 TTTATTTTTATTTTCC
24071189 TTTATTTTTATTTT
1 TTTATTTTTATTTT
24071203 ATTTTTCTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 13 0.48
17 5 0.19
18 4 0.15
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTATTTTTATTTTCC
Found at i:24071507 original size:59 final size:57
Alignment explanation
Indices: 24071217--24071743 Score: 661
Period size: 58 Copynumber: 9.1 Consensus size: 57
24071207 TTCTGTTATT
* * * * *
24071217 ATTTTCTT-TAAATAA-ATTTCAAAAAAATATTTTTAAGGAAGAGTTGAAAGTATCA
1 ATTTTCTTGAAAATAATTTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* *
24071272 ATTTTCTTTGAAAATAAGTTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAATATCA
1 ATTTTC-TTGAAAATAATTTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* * *
24071330 ATTTTTCATGAAAATAAGTTTTCTAAAAAAT-TTTTTGAGAAAAAGTTGAAAGTATCA
1 A-TTTTCTTGAAAATAATTTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* * *
24071387 ATTTTTCTTGAAAAGAATTTATCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATTA
1 A-TTTTCTTGAAAATAATTTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* * *
24071445 ATTTTCATTAAAAATAATTTTTCTAAAAAATATTTTTTGAGAAAAAATTGAAAGTATCA
1 ATTTTC-TTGAAAATAATTTTTCTAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCA
24071504 ATTTTTCTT-AAAA-AATTTTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
1 A-TTTTCTTGAAAATAA-TTTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* *
24071561 ATTTTCCTTGAAAATAAGTTTTTCTAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCA
1 ATTTT-CTTGAAAATAA-TTTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
*
24071620 ATTTTCTTCGAAATTAAAATTTTTTCTAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTCTT-GAAA--ATAA-TTTTTCT-AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* ** * *
24071682 ATTTTCTTCGAAATTAAAGTTTCTAAAAAATA-TTTTGGGGAATAGTTGAAAGTATCA
1 ATTTTCTT-GAAAATAATTTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
24071739 ATTTT
1 ATTTT
24071744 TCTTATACAA
Statistics
Matches: 420, Mismatches: 36, Indels: 30
0.86 0.07 0.06
Matches are distributed among these distances:
55 6 0.01
56 6 0.01
57 120 0.29
58 140 0.33
59 86 0.20
60 7 0.02
61 10 0.02
62 45 0.11
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (57 bp):
ATTTTCTTGAAAATAATTTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
Found at i:24071525 original size:15 final size:15
Alignment explanation
Indices: 24071504--24071539 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
24071494 GAAAGTATCA
24071504 ATTTTTCTTAAAAAAT
1 ATTTTTC-TAAAAAAT
24071520 -TTTTTCTAAAAAAT
1 ATTTTTCTAAAAAAT
24071534 ATTTTT
1 ATTTTT
24071540 GAGGAAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTTCTAAAAAAT
Found at i:24081950 original size:14 final size:14
Alignment explanation
Indices: 24081933--24081991 Score: 54
Period size: 14 Copynumber: 4.3 Consensus size: 14
24081923 AAAAAGAGAG
24081933 AAAAAATGAAATGA
1 AAAAAATGAAATGA
*
24081947 AAAAAATGAAAAAGAA
1 AAAAAATG-AAATG-A
24081963 AAAAAAT-AAA--A
1 AAAAAATGAAATGA
24081974 AAAAAAGTG-AATGA
1 AAAAAA-TGAAATGA
24081988 AAAA
1 AAAA
24081992 GGAGGACTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
11 7 0.18
12 3 0.08
14 16 0.42
15 4 0.11
16 8 0.21
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (14 bp):
AAAAAATGAAATGA
Found at i:24083043 original size:45 final size:45
Alignment explanation
Indices: 24082982--24083155 Score: 251
Period size: 45 Copynumber: 3.8 Consensus size: 45
24082972 GAGCAATTTA
*
24082982 TTTTCAAAAGTTGTTGAACCTCTGATTAGAGGAGCTTTGTTTATGT
1 TTTTC-AAAGTCGTTGAACCTCTGATTAGAGGAGCTTTGTTTATGT
*
24083028 TTTTCAAAGTCGTTGAACCTCTGATTAGAGGAACTTTGTTTATGT
1 TTTTCAAAGTCGTTGAACCTCTGATTAGAGGAGCTTTGTTTATGT
* * *
24083073 TTTTCAAAGTTGTTGAGCCTTTGATTAGAGGAGCTTTGTTTATGT
1 TTTTCAAAGTCGTTGAACCTCTGATTAGAGGAGCTTTGTTTATGT
* * *
24083118 TTTTCAAAGTCGTTGAGCCT-TTACTTAGAGGAGTTTTG
1 TTTTCAAAGTCGTTGAACCTCTGA-TTAGAGGAGCTTTG
24083156 ATCAAATTTT
Statistics
Matches: 118, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
44 2 0.02
45 111 0.94
46 5 0.04
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (45 bp):
TTTTCAAAGTCGTTGAACCTCTGATTAGAGGAGCTTTGTTTATGT
Found at i:24083256 original size:7 final size:7
Alignment explanation
Indices: 24083244--24083332 Score: 72
Period size: 7 Copynumber: 12.1 Consensus size: 7
24083234 GGTAAGCCCA
24083244 TTTTATT
1 TTTTATT
24083251 TTTTATT
1 TTTTATT
*
24083258 TTGTATT
1 TTTTATT
*
24083265 TTGTA-T
1 TTTTATT
*
24083271 TTATATT
1 TTTTATT
*
24083278 ATTTATT
1 TTTTATT
24083285 TATTTATT
1 T-TTTATT
24083293 TATTTATT
1 T-TTTATT
*
24083301 TTGTATT
1 TTTTATT
24083308 TTATGTATT
1 TT-T-TATT
24083317 TATTTATT
1 T-TTTATT
*
24083325 ATTTATT
1 TTTTATT
24083332 T
1 T
24083333 ACTATTACTA
Statistics
Matches: 68, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
6 5 0.07
7 37 0.54
8 19 0.28
9 6 0.09
10 1 0.01
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.74
Consensus pattern (7 bp):
TTTTATT
Found at i:24083305 original size:43 final size:42
Alignment explanation
Indices: 24083245--24083333 Score: 137
Period size: 43 Copynumber: 2.1 Consensus size: 42
24083235 GTAAGCCCAT
24083245 TTTATTTTTTATTTTGTA-TTT-TGTATTTATATTATTTATTTA
1 TTTATTTTTTATTTTGTATTTTATGTATTTAT-TTA-TTATTTA
24083287 TTTATTTATTTATTTTGTATTTTATGTATTTATTTATTATTTA
1 TTTATTT-TTTATTTTGTATTTTATGTATTTATTTATTATTTA
24083330 TTTA
1 TTTA
24083334 CTATTACTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
42 7 0.16
43 22 0.50
44 6 0.14
45 9 0.20
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (42 bp):
TTTATTTTTTATTTTGTATTTTATGTATTTATTTATTATTTA
Found at i:24083348 original size:4 final size:4
Alignment explanation
Indices: 24083245--24083333 Score: 89
Period size: 4 Copynumber: 23.0 Consensus size: 4
24083235 GTAAGCCCAT
* *
24083245 TTTA TTT- TTTA TTT- TGTA TTT- TGTA TTTA TATTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA
* *
24083291 TTTA TTTA TTT- TGTA TTTTA TGTA TTTA TTTA -TTA TTTA TTTA
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA
24083334 CTATTACTAT
Statistics
Matches: 70, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
3 12 0.17
4 51 0.73
5 7 0.10
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:24083411 original size:28 final size:26
Alignment explanation
Indices: 24083366--24083424 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
24083356 ATTTATTTTT
*
24083366 TTATTAATTTTCTGTTAATATATATTTA
1 TTATTAATTTTCTATTAATAT-TA-TTA
24083394 TTATT-ATTTATCTATTAATATTATTA
1 TTATTAATTT-TCTATTAATATTATTA
24083420 TTATT
1 TTATT
24083425 TATCTAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 8 0.28
27 6 0.21
28 15 0.52
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (26 bp):
TTATTAATTTTCTATTAATATTATTA
Found at i:24083421 original size:23 final size:23
Alignment explanation
Indices: 24083391--24083469 Score: 83
Period size: 23 Copynumber: 3.5 Consensus size: 23
24083381 TAATATATAT
24083391 TTATTATTATTTATCTATTAATA
1 TTATTATTATTTATCTATTAATA
*
24083414 TTATTATTATTTATCTAATT-ATT
1 TTATTATTATTTATCT-ATTAATA
* * *
24083437 TTCTT-TTAATTATCTATTAACA
1 TTATTATTATTTATCTATTAATA
*
24083459 TT-TTTTTATTT
1 TTATTATTATTT
24083470 GATTTGATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
21 5 0.11
22 17 0.36
23 22 0.47
24 3 0.06
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTATTATTTATCTATTAATA
Found at i:24084292 original size:9 final size:10
Alignment explanation
Indices: 24084262--24084302 Score: 57
Period size: 9 Copynumber: 4.0 Consensus size: 10
24084252 GTTCCCAGGT
24084262 TTATTTATTTA
1 TTATTTA-TTA
24084273 TTTATTTATTA
1 -TTATTTATTA
24084284 TTA-TTATTA
1 TTATTTATTA
24084293 TTATTTATTA
1 TTATTTATTA
24084303 GATTAGATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.32
10 9 0.32
11 3 0.11
12 7 0.25
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTATTTATTA
Found at i:24084344 original size:6 final size:6
Alignment explanation
Indices: 24084324--24084371 Score: 66
Period size: 6 Copynumber: 8.3 Consensus size: 6
24084314 TTTAGTATTT
24084324 TTTTTA -TTTTA -TTTTA TTTTTA TTTTTA TTTTT- TTCTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT-TTTA TTTTTA
24084370 TT
1 TT
24084372 ATTTTCTGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
5 12 0.31
6 25 0.64
7 2 0.05
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:24084357 original size:24 final size:25
Alignment explanation
Indices: 24084319--24084371 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
24084309 ATTTGTTTAG
*
24084319 TATTTTTTTTATTTTAT-TTTATTTT
1 TATTTTTATTATTTT-TCTTTATTTT
24084344 TATTTTTATT-TTTTTCTTTATTTT
1 TATTTTTATTATTTTTCTTTATTTT
24084368 TATT
1 TATT
24084372 ATTTTCTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 1 0.04
24 16 0.62
25 9 0.35
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (25 bp):
TATTTTTATTATTTTTCTTTATTTT
Found at i:24084376 original size:18 final size:18
Alignment explanation
Indices: 24084314--24084378 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
24084304 ATTAGATTTG
* *
24084314 TTTAGTATTTTTTTTA-T
1 TTTATTATTTTCTTTATT
24084331 TTTATT-TTATT-TTTATT
1 TTTATTATT-TTCTTTATT
*
24084348 TTTATTTTTTTCTTTATT
1 TTTATTATTTTCTTTATT
24084366 TTTATTATTTTCT
1 TTTATTATTTTCT
24084379 GTAAATAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
16 6 0.14
17 16 0.38
18 20 0.48
ACGTcount: A:0.15, C:0.03, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTATTATTTTCTTTATT
Found at i:24085910 original size:22 final size:22
Alignment explanation
Indices: 24085853--24085935 Score: 66
Period size: 22 Copynumber: 3.8 Consensus size: 22
24085843 ATAGCATTTG
*
24085853 ATAAAATTTTGGTAA-C-CTTA
1 ATAAAATTTTAGTAATCTCTTA
* *
24085873 TATACAA-TTTAGGTAATTTC-TA
1 -ATAAAATTTTA-GTAATCTCTTA
*
24085895 ATAAAAATTTTAGTAATCTCTTG
1 AT-AAAATTTTAGTAATCTCTTA
*
24085918 ATATAATTTTAGTAATCT
1 ATAAAATTTTAGTAATCT
24085936 TTTGATAACT
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
20 3 0.06
21 11 0.22
22 27 0.55
23 8 0.16
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (22 bp):
ATAAAATTTTAGTAATCTCTTA
Found at i:24085940 original size:22 final size:22
Alignment explanation
Indices: 24085900--24085942 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
24085890 TTCTAATAAA
24085900 AATTTTAGTAATCTCTTGATAT
1 AATTTTAGTAATCTCTTGATAT
*
24085922 AATTTTAGTAATCTTTTGATA
1 AATTTTAGTAATCTCTTGATA
24085943 ACTTATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.51
Consensus pattern (22 bp):
AATTTTAGTAATCTCTTGATAT
Found at i:24086293 original size:22 final size:22
Alignment explanation
Indices: 24086275--24086403 Score: 114
Period size: 22 Copynumber: 5.9 Consensus size: 22
24086265 ATGTTATGAG
*
24086275 TGATTTATTACTAAATTATCAA
1 TGATTTACTACTAAATTATCAA
* **
24086297 TGATATACTGTTAAATTATCAA
1 TGATTTACTACTAAATTATCAA
* * * *
24086319 TAATTTAGTACTAAATTAACAT
1 TGATTTACTACTAAATTATCAA
** * *
24086341 TGATTTACTACTAAGCTATGAT
1 TGATTTACTACTAAATTATCAA
* **
24086363 TGATTTACTACTAAATTGTTGA
1 TGATTTACTACTAAATTATCAA
*
24086385 TGATTTACTACTAAGTTAT
1 TGATTTACTACTAAATTAT
24086404 TGATGGATTG
Statistics
Matches: 82, Mismatches: 25, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 82 1.00
ACGTcount: A:0.37, C:0.10, G:0.09, T:0.43
Consensus pattern (22 bp):
TGATTTACTACTAAATTATCAA
Found at i:24086459 original size:22 final size:22
Alignment explanation
Indices: 24086434--24086485 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
24086424 ATAACTGATT
24086434 TATTATTA-ATTTATTA-CTATTA
1 TATTATTATATTT-TTAGC-ATTA
*
24086456 TATTTTTATATTTTTAGCATTA
1 TATTATTATATTTTTAGCATTA
*
24086478 TGTTATTA
1 TATTATTA
24086486 CTGATTAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.62
Consensus pattern (22 bp):
TATTATTATATTTTTAGCATTA
Found at i:24086705 original size:22 final size:22
Alignment explanation
Indices: 24086642--24086854 Score: 87
Period size: 22 Copynumber: 9.7 Consensus size: 22
24086632 GATGATTAAC
*
24086642 TACTACTAAATTAT-ATTTATT
1 TACTACTAAATTATCATTGATT
** * * *
24086663 TACTTTTAAGTTTTCAATGATT
1 TACTACTAAATTATCATTGATT
*
24086685 AACTACTAAATTATCATTGATT
1 TACTACTAAATTATCATTGATT
* * *
24086707 TACTATTAAGTTAT-TTATG-TT
1 TACTACTAAATTATCAT-TGATT
* *
24086728 TACTATTAAATTTATCAATT-AAT
1 TACTACTAAA-TTATC-ATTGATT
* * * *
24086751 TACTATTAAATTGA-AACTAATT
1 TACTACTAAATT-ATCATTGATT
** * *
24086773 TACTGTTAAATTATCACTAATT
1 TACTACTAAATTATCATTGATT
* *
24086795 TACTATTAAATTATTATTGATT
1 TACTACTAAATTATCATTGATT
* * *
24086817 TATTATTAAGTTATCAATT-ATT
1 TACTACTAAATTATC-ATTGATT
* * *
24086839 AATTACTAAGTTATCA
1 TACTACTAAATTATCA
24086855 CTTATTCTTT
Statistics
Matches: 149, Mismatches: 33, Indels: 20
0.74 0.16 0.10
Matches are distributed among these distances:
21 26 0.17
22 106 0.71
23 16 0.11
24 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.49
Consensus pattern (22 bp):
TACTACTAAATTATCATTGATT
Found at i:24086743 original size:44 final size:43
Alignment explanation
Indices: 24086642--24086838 Score: 125
Period size: 44 Copynumber: 4.5 Consensus size: 43
24086632 GATGATTAAC
*
24086642 TACTACTAAATTAT-ATTTATTTACTTTTAAGTTTTCAATGATT
1 TACTACTAAATTATCA-TTATTTACTATTAAGTTTTCAATGATT
* *
24086685 AACTACTAAATTATCATTGATTTACTATTAAGTTATT-TATG-TT
1 TACTACTAAATTATCATT-ATTTACTATTAAGTT-TTCAATGATT
* * * ** *
24086728 TACTATTAAATTTATCAATTAATTACTATTAA-ATTGAAACTAATT
1 TACTACTAAA-TTATC-ATTATTTACTATTAAGTTTTCAA-TGATT
** * * *
24086773 TACTGTTAAATTATCACTAATTTACTATTAAATTATT-ATTGATT
1 TACTACTAAATTATCA-TTATTTACTATTAAGTT-TTCAATGATT
* * *
24086817 TATTATTAAGTTATCAATTATT
1 TACTACTAAATTATC-ATTATT
24086839 AATTACTAAG
Statistics
Matches: 121, Mismatches: 21, Indels: 23
0.73 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
43 28 0.23
44 72 0.60
45 19 0.16
46 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.50
Consensus pattern (43 bp):
TACTACTAAATTATCATTATTTACTATTAAGTTTTCAATGATT
Found at i:24086859 original size:22 final size:22
Alignment explanation
Indices: 24086818--24086860 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
24086808 TTATTGATTT
*
24086818 ATTATTAAGTTATCAATTATTA
1 ATTACTAAGTTATCAATTATTA
*
24086840 ATTACTAAGTTATCACTTATT
1 ATTACTAAGTTATCAATTATT
24086861 CTTTGTTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.49
Consensus pattern (22 bp):
ATTACTAAGTTATCAATTATTA
Found at i:24087195 original size:44 final size:44
Alignment explanation
Indices: 24087141--24087249 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 44
24087131 ATAATTGATA
*
24087141 ATTAAGTTATTAATTATTTACTACTAAATAATCAATGATGTACT
1 ATTAAGTTATTAATAATTTACTACTAAATAATCAATGATGTACT
* ** * * * * *
24087185 ATTAATTTATTAATAATTTGTTACTAATTTATGAATGATTTATT
1 ATTAAGTTATTAATAATTTACTACTAAATAATCAATGATGTACT
* *
24087229 ATTAAGTTATAAATGATTTAC
1 ATTAAGTTATTAATAATTTAC
24087250 CAATTATTAT
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (44 bp):
ATTAAGTTATTAATAATTTACTACTAAATAATCAATGATGTACT
Found at i:24087203 original size:11 final size:11
Alignment explanation
Indices: 24087187--24087508 Score: 76
Period size: 11 Copynumber: 29.9 Consensus size: 11
24087177 GATGTACTAT
24087187 TAATTTATTAA
1 TAATTTATTAA
* *
24087198 TAATTTGTTAC
1 TAATTTATTAA
*
24087209 TAATTTATGAA
1 TAATTTATTAA
* *
24087220 TGATTTATTAT
1 TAATTTATTAA
* *
24087231 TAAGTTATAAA
1 TAATTTATTAA
* **
24087242 TGATTTACCAA
1 TAATTTATTAA
* *
24087253 TTA-TTATTGA
1 TAATTTATTAA
** *
24087263 TAATTTACCAC
1 TAATTTATTAA
*
24087274 TAAATTATTAA
1 TAATTTATTAA
* *
24087285 CAATTTATT-T
1 TAATTTATTAA
*
24087295 TATAGTTA-TAA
1 TA-ATTTATTAA
* * * *
24087306 CTGATGTAGTAC
1 -TAATTTATTAA
**
24087318 TAATTTACCAA
1 TAATTTATTAA
*
24087329 TAATTTACTAA
1 TAATTTATTAA
* *
24087340 AAAATTATTAA
1 TAATTTATTAA
*
24087351 TAA-TTA--AT
1 TAATTTATTAA
* *
24087359 TAATTTACTAC
1 TAATTTATTAA
* *
24087370 TAAATTATCAA
1 TAATTTATTAA
24087381 TAATTTA-TAA
1 TAATTTATTAA
*
24087391 TTAAGTTATTAA
1 -TAATTTATTAA
24087403 TAATTTATT-A
1 TAATTTATTAA
* *
24087413 TTATGTTATTAG
1 TAAT-TTATTAA
* *
24087425 TAATTTACTAC
1 TAATTTATTAA
*
24087436 TAAGTT-TT--
1 TAATTTATTAA
* *
24087444 CAATTTATTAC
1 TAATTTATTAA
* *
24087455 TAAATTATCAA
1 TAATTTATTAA
* *
24087466 TTATTTATTAT
1 TAATTTATTAA
24087477 TATATTT-TT-A
1 TA-ATTTATTAA
*
24087487 TATATTTATTAT
1 TA-ATTTATTAA
*
24087499 TAAGTTATTA
1 TAATTTATTA
24087509 TTGATTTAGT
Statistics
Matches: 213, Mismatches: 80, Indels: 36
0.65 0.24 0.11
Matches are distributed among these distances:
8 8 0.04
9 5 0.02
10 25 0.12
11 160 0.75
12 15 0.07
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.49
Consensus pattern (11 bp):
TAATTTATTAA
Found at i:24087238 original size:22 final size:22
Alignment explanation
Indices: 24087122--24087248 Score: 83
Period size: 22 Copynumber: 5.8 Consensus size: 22
24087112 AGTATAATAA
* * *
24087122 AAGTTATCAATAATTGATAATT
1 AAGTTATCAATGATTTATTATT
* * * *
24087144 AAGTTATTAATTATTTACTACT
1 AAGTTATCAATGATTTATTATT
* * * *
24087166 AAATAATCAATGATGTACTATT
1 AAGTTATCAATGATTTATTATT
* * * * *
24087188 AATTTATTAATAATTTGTTACT
1 AAGTTATCAATGATTTATTATT
* *
24087210 AATTTATGAATGATTTATTATT
1 AAGTTATCAATGATTTATTATT
*
24087232 AAGTTATAAATGATTTA
1 AAGTTATCAATGATTTA
24087249 CCAATTATTA
Statistics
Matches: 79, Mismatches: 26, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 79 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (22 bp):
AAGTTATCAATGATTTATTATT
Found at i:24087392 original size:33 final size:33
Alignment explanation
Indices: 24087329--24087410 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 33
24087319 AATTTACCAA
* *
24087329 TAATTTACTAAAAAATTATTAATAA--T-TAAT
1 TAATTTACTAATAAATTATCAATAATTTATAAT
*
24087359 TAATTTACTACTAAATTATCAATAATTTATAAT
1 TAATTTACTAATAAATTATCAATAATTTATAAT
* * *
24087392 TAAGTTATTAATAATTTAT
1 TAATTTACTAATAAATTAT
24087411 TATTATGTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
30 22 0.52
32 1 0.02
33 19 0.45
ACGTcount: A:0.48, C:0.05, G:0.01, T:0.46
Consensus pattern (33 bp):
TAATTTACTAATAAATTATCAATAATTTATAAT
Found at i:24087450 original size:19 final size:19
Alignment explanation
Indices: 24087426--24087467 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
24087416 TGTTATTAGT
* *
24087426 AATTTACTACTAAGTTTTC
1 AATTTACTACTAAATTATC
*
24087445 AATTTATTACTAAATTATC
1 AATTTACTACTAAATTATC
24087464 AATT
1 AATT
24087468 ATTTATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (19 bp):
AATTTACTACTAAATTATC
Found at i:24087456 original size:85 final size:86
Alignment explanation
Indices: 24087360--24087550 Score: 226
Period size: 85 Copynumber: 2.2 Consensus size: 86
24087350 ATAATTAATT
* *
24087360 AATTTACTACTAAATTATCAATAATTTATAATTA-AGTTATTAATA-ATTTATTATTATGTTATT
1 AATTTATTACTAAATTATCAATAATTTATAATTATA-TT-TTAATATATTTATTATTAAGTTATT
* *
24087423 AGTAATTTACTAC-TAAGTTTTC
64 AGTAATTTACTACTTAAATTTTA
* * * *
24087445 AATTTATTACTAAATTATCAATTATTTATTATTATATTTTTATATATTTATTATTAAGTTATTAT
1 AATTTATTACTAAATTATCAATAATTTATAATTATATTTTAATATATTTATTATTAAGTTATTAG
* *
24087510 TGATTTAGTACTTAAATTTTA
66 TAATTTACTACTTAAATTTTA
*
24087531 ATTATTTATTACAAAATTAT
1 A--ATTTATTACTAAATTAT
24087551 TACTGAGTTA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
84 5 0.06
85 60 0.67
86 9 0.10
88 16 0.18
ACGTcount: A:0.38, C:0.05, G:0.04, T:0.53
Consensus pattern (86 bp):
AATTTATTACTAAATTATCAATAATTTATAATTATATTTTAATATATTTATTATTAAGTTATTAG
TAATTTACTACTTAAATTTTA
Found at i:24087473 original size:22 final size:22
Alignment explanation
Indices: 24087353--24087552 Score: 115
Period size: 22 Copynumber: 9.2 Consensus size: 22
24087343 ATTATTAATA
*
24087353 ATTAATTAATTTACTACTAAATT
1 ATTAATT-ATTTATTACTAAATT
* * * * *
24087376 ATCAATAATTTATAATTAAGTT
1 ATTAATTATTTATTACTAAATT
* * **
24087398 ATTAATAATTTATTATTATGTT
1 ATTAATTATTTATTACTAAATT
* * * *
24087420 ATTAGTAATTTACTACTAAGTT
1 ATTAATTATTTATTACTAAATT
*
24087442 -TTCA--ATTTATTACTAAATT
1 ATTAATTATTTATTACTAAATT
* * *
24087461 ATCAATTATTTATTATTATATT
1 ATTAATTATTTATTACTAAATT
* * *
24087483 -TTTATATATTTATTATTAAGTT
1 ATTAAT-TATTTATTACTAAATT
*
24087505 ATT-ATTGATTTAGTACTTAAATT
1 ATTAATT-ATTTATTAC-TAAATT
*
24087528 -TTAATTATTTATTACAAAATT
1 ATTAATTATTTATTACTAAATT
24087549 ATTA
1 ATTA
24087553 CTGAGTTATC
Statistics
Matches: 138, Mismatches: 30, Indels: 19
0.74 0.16 0.10
Matches are distributed among these distances:
19 13 0.09
20 2 0.01
21 11 0.08
22 97 0.70
23 15 0.11
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.53
Consensus pattern (22 bp):
ATTAATTATTTATTACTAAATT
Found at i:24087494 original size:63 final size:63
Alignment explanation
Indices: 24087359--24087504 Score: 150
Period size: 63 Copynumber: 2.3 Consensus size: 63
24087349 AATAATTAAT
* * * * * *
24087359 TAATTTACTACTAAATTATCAATAATTTATAATTAAGTTATTAATAATTTATTATTATGTTATTA
1 TAATTTACTACTAAGTTTTC---AATTTATAACTAAATTATCAATAATTTATTATTATATTATTA
24087424 G
63 G
* * *
24087425 TAATTTACTACTAAGTTTTCAATTTATTACTAAATTATCAATTATTTATTATTATATTTTTA-
1 TAATTTACTACTAAGTTTTCAATTTATAACTAAATTATCAATAATTTATTATTATATTATTAG
* *
24087487 TATATTTATTATTAAGTT
1 TA-ATTTACTACTAAGTT
24087505 ATTATTGATT
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
62 2 0.03
63 48 0.71
66 18 0.26
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.53
Consensus pattern (63 bp):
TAATTTACTACTAAGTTTTCAATTTATAACTAAATTATCAATAATTTATTATTATATTATTAG
Found at i:24087679 original size:22 final size:21
Alignment explanation
Indices: 24087605--24087893 Score: 93
Period size: 22 Copynumber: 13.4 Consensus size: 21
24087595 ATTGCTTTAT
* *
24087605 TTAAATTATGTATAATTTATTA
1 TTAAATTAT-AATAATTTACTA
* *
24087627 -TAAAGTTATTAATGATTAACTA
1 TTAAA-TTA-TAATAATTTACTA
** *
24087649 TTATGTTATCGATAATTTACTA
1 TTAAATTAT-AATAATTTACTA
* *
24087671 TTAAATTATACTAATTTACTT
1 TTAAATTATAATAATTTACTA
* * * *
24087692 TTAAGTTTTCAATAAATAACTA
1 TTAAATTAT-AATAATTTACTA
* * *
24087714 CTAAATTATCAATGATTTATTA
1 TTAAATTAT-AATAATTTACTA
* * *
24087736 CTAATTTATAATTGATTTACTA
1 TTAAATTATAA-TAATTTACTA
* * *
24087758 CTAAATTATTTATTATTTACTA
1 TTAAATTA-TAATAATTTACTA
* *
24087780 TT--ATTA-ATTAA-TTATTA
1 TTAAATTATAATAATTTACTA
* * *
24087797 TTAAACTAAAACTGATTTACTA
1 TTAAATTATAA-TAATTTACTA
* * *
24087819 TTAAATTTTCACTCATTTACTA
1 TTAAATTAT-AATAATTTACTA
* * * * *
24087841 TTAAGTTATCATTGATTTATTG
1 TTAAATTAT-AATAATTTACTA
* *
24087863 CTAAATTATTAATAATTAACTA
1 TTAAATTA-TAATAATTTACTA
*
24087885 TTAAGTTAT
1 TTAAATTAT
24087894 CATTTTTTTT
Statistics
Matches: 192, Mismatches: 61, Indels: 29
0.68 0.22 0.10
Matches are distributed among these distances:
17 7 0.04
18 2 0.01
19 3 0.02
20 5 0.03
21 26 0.14
22 142 0.74
23 7 0.04
ACGTcount: A:0.39, C:0.08, G:0.04, T:0.48
Consensus pattern (21 bp):
TTAAATTATAATAATTTACTA
Found at i:24087857 original size:44 final size:44
Alignment explanation
Indices: 24087809--24087897 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
24087799 AAACTAAAAC
* * * *
24087809 TGATTTACTATTAAATT-TTCACTCATTTACTATTAAGTTATCAT
1 TGATTTACTACTAAATTATT-AATAATTAACTATTAAGTTATCAT
* *
24087853 TGATTTATTGCTAAATTATTAATAATTAACTATTAAGTTATCAT
1 TGATTTACTACTAAATTATTAATAATTAACTATTAAGTTATCAT
24087897 T
1 T
24087898 TTTTTTTGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 36 0.95
45 2 0.05
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.49
Consensus pattern (44 bp):
TGATTTACTACTAAATTATTAATAATTAACTATTAAGTTATCAT
Found at i:24088019 original size:22 final size:22
Alignment explanation
Indices: 24087994--24088077 Score: 66
Period size: 22 Copynumber: 3.8 Consensus size: 22
24087984 TATTATTTTA
* *
24087994 TTATTATATATTTACTAAAAAG
1 TTATCATATATTTACTATAAAG
*
24088016 TTATCA-ACTATTGACTATTAAA-
1 TTATCATA-TATTTACTA-TAAAG
* *
24088038 TTATCATTTATTTACTATTAAG
1 TTATCATATATTTACTATAAAG
*
24088060 TTATTACTA-ATTTACTAT
1 TTATCA-TATATTTACTAT
24088078 TTAGTCATCA
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
21 4 0.08
22 41 0.84
23 4 0.08
ACGTcount: A:0.38, C:0.10, G:0.04, T:0.49
Consensus pattern (22 bp):
TTATCATATATTTACTATAAAG
Found at i:24088077 original size:44 final size:44
Alignment explanation
Indices: 24087944--24088105 Score: 107
Period size: 44 Copynumber: 3.7 Consensus size: 44
24087934 TGCATTTATA
* * * * *
24087944 ATTATATTATAATTAATTTACCATTAAAG-TATTA-TACATTTATT
1 ATTAAATTATCATTTATTTACTATT-AAGTTATTACTA-ATTTACT
** * * ** * *
24087988 ATTTTATTATTATATATTTACTAAAAAGTTATCAACT-ATTGACT
1 ATTAAATTATCATTTATTTACTATTAAGTTAT-TACTAATTTACT
24088032 ATTAAATTATCATTTATTTACTATTAAGTTATTACTAATTTACT
1 ATTAAATTATCATTTATTTACTATTAAGTTATTACTAATTTACT
* * * * *
24088076 ATTTAGTCATCAATGA-TTACTATTAAGTTA
1 ATTAAATTATCATTTATTTACTATTAAGTTA
24088106 GACTGATTAT
Statistics
Matches: 91, Mismatches: 23, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
43 20 0.22
44 69 0.76
45 1 0.01
46 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (44 bp):
ATTAAATTATCATTTATTTACTATTAAGTTATTACTAATTTACT
Found at i:24088078 original size:22 final size:22
Alignment explanation
Indices: 24088003--24088105 Score: 84
Period size: 22 Copynumber: 4.7 Consensus size: 22
24087993 ATTATTATAT
**
24088003 ATTTACTAAAAAGTTATCAACT-
1 ATTTACTATTAAGTTATC-ACTA
* * * *
24088025 ATTGACTATTAAATTATCATTT
1 ATTTACTATTAAGTTATCACTA
*
24088047 ATTTACTATTAAGTTATTACTA
1 ATTTACTATTAAGTTATCACTA
* * * *
24088069 ATTTACTATTTAGTCATCAATG
1 ATTTACTATTAAGTTATCACTA
24088091 A-TTACTATTAAGTTA
1 ATTTACTATTAAGTTA
24088106 GACTGATTAT
Statistics
Matches: 63, Mismatches: 17, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
21 14 0.22
22 49 0.78
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.46
Consensus pattern (22 bp):
ATTTACTATTAAGTTATCACTA
Found at i:24088135 original size:21 final size:20
Alignment explanation
Indices: 24088087--24088135 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
24088077 TTTAGTCATC
24088087 AATGATTACTATTAAGTTAG
1 AATGATTACTATTAAGTTAG
* *
24088107 ACTGATTA-TATTTAAGTTTTG
1 AATGATTACTA-TTAAG-TTAG
24088128 AATGATTA
1 AATGATTA
24088136 ATTACTAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 2 0.08
20 12 0.50
21 10 0.42
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.45
Consensus pattern (20 bp):
AATGATTACTATTAAGTTAG
Found at i:24090310 original size:17 final size:17
Alignment explanation
Indices: 24090266--24090310 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
24090256 AATTTTTCCT
*
24090266 TTATTTAAAAA-TTTTA
1 TTATATAAAAATTTTTA
* *
24090282 TTATACATAAATTTTTA
1 TTATATAAAAATTTTTA
24090299 TTATATAAAAAT
1 TTATATAAAAAT
24090311 ATTAAAATAC
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TTATATAAAAATTTTTA
Found at i:24090765 original size:22 final size:23
Alignment explanation
Indices: 24090709--24090766 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
24090699 TATTATTAGC
24090709 GATTTACTACT-AAGCTATCAAT
1 GATTTACTACTAAAGCTATCAAT
* * *
24090731 GATATATTGCTAAAG-TATCAAT
1 GATTTACTACTAAAGCTATCAAT
24090753 GATTTACTACTAAA
1 GATTTACTACTAAA
24090767 TTAGCATAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
22 26 0.90
23 3 0.10
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (23 bp):
GATTTACTACTAAAGCTATCAAT
Found at i:24101935 original size:20 final size:23
Alignment explanation
Indices: 24101908--24101961 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 23
24101898 TATTTTTGTT
24101908 ATTATTATAGTATA-TATTAT-A
1 ATTATTATAGTATACTATTATAA
* *
24101929 A-TATTATGGTATACTATTGTAA
1 ATTATTATAGTATACTATTATAA
24101951 ATTATTATAGT
1 ATTATTATAGT
24101962 GTTATTATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 11 0.41
21 6 0.22
22 2 0.07
23 8 0.30
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (23 bp):
ATTATTATAGTATACTATTATAA
Found at i:24101956 original size:23 final size:21
Alignment explanation
Indices: 24101908--24101969 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
24101898 TATTTTTGTT
24101908 ATTATTATAGTATATATTATA
1 ATTATTATAGTATATATTATA
* *
24101929 A-TATTATGGTATACTATTGTAA
1 ATTATTATAGTATA-TATTAT-A
*
24101951 ATTATTATAGTGT-TATTAT
1 ATTATTATAGTATATATTAT
24101970 TATTGTATCA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
20 11 0.33
21 11 0.33
22 2 0.06
23 9 0.27
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.52
Consensus pattern (21 bp):
ATTATTATAGTATATATTATA
Found at i:24101969 original size:3 final size:3
Alignment explanation
Indices: 24101963--24102069 Score: 85
Period size: 3 Copynumber: 36.7 Consensus size: 3
24101953 TATTATAGTG
* * * * * *
24101963 TTA TTA TTA TT- GTA TCA -TA TTA TTA TTA TTA TTA TCA TCA TCA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
24102009 TCA TCA TTA TCA TTA TCA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
24102056 TTT TTA TTA CTA TT
1 TTA TTA TTA TTA TT
24102070 GTCATTTTTT
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
2 4 0.05
3 83 0.95
ACGTcount: A:0.32, C:0.09, G:0.01, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:24102076 original size:18 final size:18
Alignment explanation
Indices: 24102014--24102078 Score: 60
Period size: 18 Copynumber: 3.7 Consensus size: 18
24102004 CATCATCATC
* * *
24102014 ATTATCATTATCATTATT
1 ATTATCATTTTTATTACT
* *
24102032 ATTAT-ATTATTATTATT
1 ATTATCATTTTTATTACT
*
24102049 ATTATTATTTTTATTACT
1 ATTATCATTTTTATTACT
*
24102067 ATTGTCATTTTT
1 ATTATCATTTTT
24102079 TCTTTTCTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
17 16 0.39
18 25 0.61
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (18 bp):
ATTATCATTTTTATTACT
Found at i:24102599 original size:21 final size:20
Alignment explanation
Indices: 24102560--24102600 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
24102550 AGATTTGGAC
* *
24102560 GAATTTTTTGATGAGTTTTT
1 GAATTTTTTCATGAATTTTT
24102580 GAATTTTTTCATTGAATTTTT
1 GAATTTTTTCA-TGAATTTTT
24102601 CGACGAGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.22, C:0.02, G:0.15, T:0.61
Consensus pattern (20 bp):
GAATTTTTTCATGAATTTTT
Found at i:24102978 original size:18 final size:18
Alignment explanation
Indices: 24102955--24102993 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
24102945 CTTTTTTCAG
24102955 TTTATTTTTAAATTTTAT
1 TTTATTTTTAAATTTTAT
**
24102973 TTTATTTTTATTTTTTAT
1 TTTATTTTTAAATTTTAT
24102991 TTT
1 TTT
24102994 CTATTTTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTATTTTTAAATTTTAT
Found at i:24102988 original size:13 final size:13
Alignment explanation
Indices: 24102955--24103010 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
24102945 CTTTTTTCAG
* *
24102955 TTTATTTTTAAAT
1 TTTATTTTTTATT
24102968 TTTA--TTTTATT
1 TTTATTTTTTATT
24102979 TTTATTTTTTATT
1 TTTATTTTTTATT
* *
24102992 TTCTATTTTATCTT
1 TT-TATTTTTTATT
24103006 TTTAT
1 TTTAT
24103011 ACAATTTCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 9 0.25
13 16 0.44
14 11 0.31
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTATTTTTTATT
Found at i:24103007 original size:7 final size:6
Alignment explanation
Indices: 24102955--24103010 Score: 51
Period size: 7 Copynumber: 8.8 Consensus size: 6
24102945 CTTTTTTCAG
* *
24102955 TTTATT TTTAAAT TTTA-T TTTATT TTTATTT TTTATT TTCTATT TTATCTT
1 TTTATT TTT-ATT TTTATT TTTATT TTTA-TT TTTATT TT-TATT TT-TATT
24103006 TTTAT
1 TTTAT
24103011 ACAATTTCAC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
5 5 0.12
6 15 0.36
7 22 0.52
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTATT
Done.