Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 16 of 131
Found at i:3991464 original size:42 final size:41
Alignment explanation
Indices: 3991375--3991465 Score: 96
Period size: 42 Copynumber: 2.2 Consensus size: 41
3991365 AATTTCCAGC
*
3991375 CAGATAAATCAAAAAAATAAAAAAAATTAAACGAAAATAAA
1 CAGATAAATCAAAAAAATAAAAAAAATTAAAAGAAAATAAA
* **
3991416 TCAGATAAAT-AAAAAAATTAACAGATAAATTAAAATTAAATAAA
1 -CAGATAAATCAAAAAAA-TAA-A-AAAAATTAAAAGAAAATAAA
3991460 -AGATAA
1 CAGATAA
3991466 TACATAATCT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
41 7 0.17
42 18 0.43
43 1 0.02
44 16 0.38
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.20
Consensus pattern (41 bp):
CAGATAAATCAAAAAAATAAAAAAAATTAAAAGAAAATAAA
Found at i:3991579 original size:12 final size:12
Alignment explanation
Indices: 3991563--3991648 Score: 70
Period size: 11 Copynumber: 7.0 Consensus size: 12
3991553 CCTAAGATAA
*
3991563 AAAAATAAAAGAA
1 AAAAATAAAA-AT
3991576 AAAAATATATAAAT
1 AAAAATA-A-AAAT
3991590 AAAAATAAAAAT
1 AAAAATAAAAAT
3991602 AAAAAT-AAAAT
1 AAAAATAAAAAT
*
3991613 AGAAAT-AAAAT
1 AAAAATAAAAAT
* *
3991624 AAGAATGTAAAAT
1 AAAAAT-AAAAAT
3991637 ACAAAA-AAAAAT
1 A-AAAATAAAAAT
3991649 GAAGAAAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
11 19 0.31
12 15 0.24
13 14 0.23
14 12 0.19
15 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.17
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:3991591 original size:29 final size:29
Alignment explanation
Indices: 3991559--3991622 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
3991549 AATACCTAAG
* *
3991559 ATAAAAAAATAAAAGAAAAA-AATATATAA
1 ATAAAAAAA-AAAAGAAAAATAAAATAGAA
* *
3991588 ATAAAAATAAAAATAAAAATAAAATAGAA
1 ATAAAAAAAAAAAGAAAAATAAAATAGAA
3991617 ATAAAA
1 ATAAAA
3991623 TAAGAATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 9 0.30
29 21 0.70
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (29 bp):
ATAAAAAAAAAAAGAAAAATAAAATAGAA
Found at i:3991595 original size:6 final size:6
Alignment explanation
Indices: 3991563--3991648 Score: 70
Period size: 6 Copynumber: 14.0 Consensus size: 6
3991553 CCTAAGATAA
*
3991563 AAAAAT AAAAGAA AAAAAT ATATAAAT AAAAAT AAAAAT AAAAAT -AAAAT
1 AAAAAT AAAA-AT AAAAAT A-A-AAAT AAAAAT AAAAAT AAAAAT AAAAAT
* * *
3991613 AGAAAT -AAAAT AAGAAT GTAAAAT ACAAAA- AAAAAT
1 AAAAAT AAAAAT AAAAAT -AAAAAT A-AAAAT AAAAAT
3991649 GAAGAAAAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 13 0.20
6 31 0.48
7 15 0.23
8 5 0.08
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:3991612 original size:17 final size:17
Alignment explanation
Indices: 3991563--3991622 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
3991553 CCTAAGATAA
*
3991563 AAAAAT-AAAAGAAAA-
1 AAAAATAAAAATAAAAT
* *
3991578 AAATATATAAATAAAAAT
1 AAAAATAAAAAT-AAAAT
3991596 AAAAATAAAAATAAAAT
1 AAAAATAAAAATAAAAT
*
3991613 AGAAATAAAA
1 AAAAATAAAA
3991623 TAAGAATGTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
15 5 0.14
16 3 0.08
17 18 0.50
18 10 0.28
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (17 bp):
AAAAATAAAAATAAAAT
Found at i:3991935 original size:41 final size:41
Alignment explanation
Indices: 3991866--3992221 Score: 455
Period size: 41 Copynumber: 8.6 Consensus size: 41
3991856 GAGGCTCAAT
* * * * * *
3991866 GACTTTGAGAAACATAAATGGCTCATCTAATCAGAGGCTCAAC
1 GACTTTGA-AAA-GTAAATTGCTCCTCTAAACAGAGGCACCAC
* * * * * *
3991909 AACTTTAAAAAATAAATTGCTCATCTAAATAGAGGCACCAT
1 GACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
3991950 GACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
1 GACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
3991992 GACTTTTGAAAAGTAAATTGCTCCTTTAAACAGAGGCACCAC
1 GAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
3992034 GACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGGACCAC
1 GACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* * *
3992075 GATTTTGAAAAGTAAATCGCTCCTCTAAACAGAAGCACCAC
1 GACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* *
3992116 GACTTTGAAAAGTAAATTGCTCTTATAAACAGAGGCACCAC
1 GACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
3992157 GACTTTGAAAAGTAAATTGCTCCTCTAAATAGAGGCA--AC
1 GACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
3992196 GAAACTTTGAAAAGTAAATTGCTCCT
1 G--ACTTTGAAAAGTAAATTGCTCCT
3992222 TAACAATCAT
Statistics
Matches: 280, Mismatches: 29, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
39 3 0.01
41 195 0.70
42 73 0.26
43 9 0.03
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (41 bp):
GACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
Found at i:3992570 original size:43 final size:42
Alignment explanation
Indices: 3992511--3992593 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 42
3992501 ATTTAGTAAA
*
3992511 TTTGGAATTCATATCCAAAAA-TCTAAAGCTTTTCATTTGAAT
1 TTTGGAATTCACATCCAAAAATTC-AAAGCTTTTCATTTGAAT
3992553 TTTGGTAATTCACATCCAAAAATTCAAAGCTTTTCATTTGA
1 TTTGG-AATTCACATCCAAAAATTCAAAGCTTTTCATTTGA
3992594 GTTCAAAGGC
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
42 5 0.13
43 31 0.82
44 2 0.05
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.40
Consensus pattern (42 bp):
TTTGGAATTCACATCCAAAAATTCAAAGCTTTTCATTTGAAT
Found at i:3993954 original size:11 final size:11
Alignment explanation
Indices: 3993940--3993994 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
3993930 CATTTTCTCA
3993940 TTTTTTCATCT
1 TTTTTTCATCT
* *
3993951 TTTTTTCCTTTT
1 TTTTTT-CATCT
3993963 TTTTTCTCATCT
1 TTTTT-TCATCT
3993975 TTTTTT--TCT
1 TTTTTTCATCT
3993984 TATTTTTCATC
1 T-TTTTTCATC
3993995 CATTGTTGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
9 4 0.11
10 5 0.14
11 7 0.20
12 18 0.51
13 1 0.03
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTTTCATCT
Found at i:3993956 original size:21 final size:21
Alignment explanation
Indices: 3993932--3993994 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
3993922 TTTTTTTTCA
*
3993932 TTTTCTCATTTTTTCATCTTT
1 TTTTCTCTTTTTTTCATCTTT
*
3993953 TTTTCCTTTTTTTTTCTCATCTTT
1 TTTT-C-TCTTTTTT-TCATCTTT
3993977 TTTT-TCTTATTTTTCATC
1 TTTTCTCTT-TTTTTCATC
3993995 CATTGTTGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
21 12 0.34
22 5 0.14
23 6 0.17
24 12 0.34
ACGTcount: A:0.08, C:0.19, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTTCTCTTTTTTTCATCTTT
Found at i:3993966 original size:13 final size:14
Alignment explanation
Indices: 3993917--3993983 Score: 54
Period size: 14 Copynumber: 4.9 Consensus size: 14
3993907 CAATTTAAAT
*
3993917 ATCTTTTTTTTTTC
1 ATCTTTTTTTTCTC
*
3993931 AT-TTTCTCATTTTTTC
1 ATCTTT-T--TTTTCTC
3993947 ATC-TTTTTTTC-C
1 ATCTTTTTTTTCTC
3993959 -T-TTTTTTTTCTC
1 ATCTTTTTTTTCTC
3993971 ATCTTTTTTTTCT
1 ATCTTTTTTTTCT
3993984 TATTTTTCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 16
0.72 0.02 0.26
Matches are distributed among these distances:
11 9 0.20
12 2 0.05
13 8 0.18
14 13 0.30
15 1 0.02
16 11 0.25
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (14 bp):
ATCTTTTTTTTCTC
Found at i:3993967 original size:24 final size:24
Alignment explanation
Indices: 3993940--3993990 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
3993930 CATTTTCTCA
*
3993940 TTTTT-TCATCTTTTTTTCCTTTT
1 TTTTTCTCATCTTTTTTTCCTTAT
*
3993963 TTTTTCTCATCTTTTTTTTCTTAT
1 TTTTTCTCATCTTTTTTTCCTTAT
3993987 TTTT
1 TTTT
3993991 CATCCATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTCTCATCTTTTTTTCCTTAT
Found at i:3997942 original size:27 final size:26
Alignment explanation
Indices: 3997852--3997943 Score: 71
Period size: 27 Copynumber: 3.3 Consensus size: 26
3997842 TTTTGTGCAA
3997852 AAAAATTGATACTTTCAACTTTTTTTC
1 AAAAATTGATACTTTCAAC-TTTTTTC
* *
3997879 AAAAA-T-ATTCTTTTGAAACTTTAATTTC
1 AAAAATTGATAC-TTT-CAACTTT--TTTC
3997907 GAAGAAAATTGATACTTTCAACTTTTTCTC
1 --A-AAAATTGATACTTTCAACTTTTT-TC
3997937 AAAAATT
1 AAAAATT
3997944 TATTTTTTTG
Statistics
Matches: 51, Mismatches: 4, Indels: 20
0.68 0.05 0.27
Matches are distributed among these distances:
25 3 0.06
26 7 0.14
27 14 0.27
28 5 0.10
29 2 0.04
30 3 0.06
31 10 0.20
32 4 0.08
33 3 0.06
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.43
Consensus pattern (26 bp):
AAAAATTGATACTTTCAACTTTTTTC
Found at i:3997973 original size:17 final size:16
Alignment explanation
Indices: 3997938--3997976 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
3997928 CTTTTTCTCA
**
3997938 AAAATTTATTTTTTTG
1 AAAATTTATTTTTAGG
3997954 AAAATTTATTTTTAAGG
1 AAAATTTATTTTT-AGG
3997971 AAAATT
1 AAAATT
3997977 GATACTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (16 bp):
AAAATTTATTTTTAGG
Found at i:3997982 original size:60 final size:59
Alignment explanation
Indices: 3997853--3998129 Score: 362
Period size: 60 Copynumber: 4.7 Consensus size: 59
3997843 TTTGTGCAAA
* * * **
3997853 AAAATTGATACTTTCAACTTTTTTTCAAAAATATTCTTTTGAAACTTTAATTTCGAA-G
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGAAAATTTAATTTTTAAGG
3997911 AAAATTGATACTTTCAACTTTTTCTCAAAAATTTATTTTTTTGAAAATTT-ATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTTCTCAAAAA--TATTTTTTTGAAAATTTAATTTTTAAGG
* * *
3997971 AAAATTGATACTTTCAACTTTTCCTCAAAAAAAATTTTTTTTGAAAATTT-ATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTTCTC-AAAAATA-TTTTTTTGAAAATTTAATTTTTAAGG
* * * * **
3998031 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTAGAAACTTTGATTTTCGAGG
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGAAAATTTAATTTTTAAGG
*
3998090 AAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTT
3998130 TAGGTTTTAT
Statistics
Matches: 194, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
58 43 0.22
59 57 0.29
60 89 0.46
61 5 0.03
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGAAAATTTAATTTTTAAGG
Found at i:3998108 original size:119 final size:118
Alignment explanation
Indices: 3997853--3998130 Score: 382
Period size: 118 Copynumber: 2.3 Consensus size: 118
3997843 TTTGTGCAAA
* * *
3997853 AAAATTGATACTTTCAACTTTTTTTCAAAAATA-TTCTTTTGAAACTTTAATTTCGAAGAAAATT
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTTGAAAATTTAATTTCGAAGAAAATT
* * *
3997917 GATACTTTCAACTTTTTCTCAAAAATTTATTTTTTTGAAAATTTATTTTTAAGG
66 GATACTTTCAACTTTTTCCCAAAAA-TTATTTTTTAGAAAATTTATTTTCAAGG
* * **
3997971 AAAATTGATACTTTCAACTTTTCCTCAAAAAAAATTTTTTTTGAAAATTT-ATTTTTAAGAAAAA
1 AAAATTGATACTTTCAACTTTTTCTC-AAAAATATTTTTTTTGAAAATTTAATTTCGAAG-AAAA
* *
3998035 TTGATACTTTCAACTTTTTCCCAAAAA-TATTTTTTAGAAACTTTGATTTTCGAGG
64 TTGATACTTTCAACTTTTTCCCAAAAATTATTTTTTAGAAAATTT-ATTTTCAAGG
*
3998090 AAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTT
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTT
3998131 AGGTTTTATT
Statistics
Matches: 141, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
118 53 0.38
119 45 0.32
120 43 0.30
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (118 bp):
AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTTGAAAATTTAATTTCGAAGAAAATT
GATACTTTCAACTTTTTCCCAAAAATTATTTTTTAGAAAATTTATTTTCAAGG
Found at i:3998179 original size:6 final size:5
Alignment explanation
Indices: 3998146--3998222 Score: 61
Period size: 6 Copynumber: 14.8 Consensus size: 5
3998136 TTATTTATAG
*
3998146 AAAAT AAAAT --AAT AAAAC AAAAT AAAAAT GAAAAT AAAA- AAAAGT
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT AAAAT AAAA-T
*
3998191 AAAACA AAAAT AAAAAT AAAAT AAAGAT AAAA
1 AAAA-T AAAAT -AAAAT AAAAT AAA-AT AAAA
3998223 GAACATTAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
3 3 0.05
4 4 0.07
5 24 0.41
6 28 0.47
ACGTcount: A:0.79, C:0.03, G:0.04, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:3998199 original size:32 final size:32
Alignment explanation
Indices: 3998145--3998215 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
3998135 TTTATTTATA
*
3998145 GAAAAT-AAAATAATAAAAC-AAAATAAAAAT
1 GAAAATAAAAAAAATAAAACAAAAATAAAAAT
3998175 GAAAATAAAAAAAAGTAAAACAAAAATAAAAAT
1 GAAAATAAAAAAAA-TAAAACAAAAATAAAAAT
3998208 -AAAATAAA
1 GAAAATAAA
3998216 GATAAAAGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
30 6 0.16
31 6 0.16
32 14 0.38
33 11 0.30
ACGTcount: A:0.79, C:0.03, G:0.04, T:0.14
Consensus pattern (32 bp):
GAAAATAAAAAAAATAAAACAAAAATAAAAAT
Found at i:3998206 original size:27 final size:28
Alignment explanation
Indices: 3998146--3998222 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 28
3998136 TTATTTATAG
* * * *
3998146 AAAATAAAATAATAAAACAAAATAAAAATG
1 AAAATAAAA-AA-AAGATAAAACAAAAATA
3998176 AAAATAAAAAAAAG-TAAAACAAAAATA
1 AAAATAAAAAAAAGATAAAACAAAAATA
*
3998203 AAAATAAAATAAAGATAAAA
1 AAAATAAAAAAAAGATAAAA
3998223 GAACATTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
27 23 0.56
28 7 0.17
29 2 0.05
30 9 0.22
ACGTcount: A:0.79, C:0.03, G:0.04, T:0.14
Consensus pattern (28 bp):
AAAATAAAAAAAAGATAAAACAAAAATA
Found at i:3998220 original size:11 final size:11
Alignment explanation
Indices: 3998146--3998222 Score: 77
Period size: 11 Copynumber: 6.8 Consensus size: 11
3998136 TTATTTATAG
3998146 AAAATAAAATAA
1 AAAATAAAAT-A
*
3998158 TAAAACAAAATA
1 -AAAATAAAATA
3998170 AAAATGAAAATA
1 AAAAT-AAAATA
*
3998182 AAAA-AAAGTA
1 AAAATAAAATA
3998192 AAACA-AAAATA
1 AAA-ATAAAATA
3998203 AAAATAAAATA
1 AAAATAAAATA
*
3998214 AAGATAAAA
1 AAAATAAAA
3998223 GAACATTAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
10 9 0.16
11 27 0.48
12 11 0.20
13 9 0.16
ACGTcount: A:0.79, C:0.03, G:0.04, T:0.14
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:3998235 original size:32 final size:30
Alignment explanation
Indices: 3998145--3998227 Score: 91
Period size: 33 Copynumber: 2.7 Consensus size: 30
3998135 TTTATTTATA
3998145 GAAAATAAAATAATAA-AACAAAATAAAAAT
1 GAAAATAAAATAA-AAGAACAAAATAAAAAT
3998175 GAAAATAAAA-AAAAGTAAAACAAAAATAAAAAT
1 GAAAATAAAATAAAAG---AAC-AAAATAAAAAT
3998208 -AAAATAAAGATAAAAGAACA
1 GAAAATAAA-ATAAAAGAACA
3998228 TTAAATAATC
Statistics
Matches: 46, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
28 2 0.04
29 2 0.04
30 11 0.24
31 3 0.07
32 11 0.24
33 12 0.26
34 5 0.11
ACGTcount: A:0.77, C:0.04, G:0.06, T:0.13
Consensus pattern (30 bp):
GAAAATAAAATAAAAGAACAAAATAAAAAT
Found at i:3999327 original size:6 final size:5
Alignment explanation
Indices: 3999295--3999387 Score: 73
Period size: 5 Copynumber: 17.0 Consensus size: 5
3999285 CTAAGATAAA
*
3999295 AAAAT AAAAG AAAA- AAATAT ATAAAT AATAAT AAAAAT AAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAA-AT A-AAAT AA-AAT -AAAAT -AAAAT AAAAT
3999344 AGAAAT AAAAT AAGAATGT AAAAT ACAAA- AAAAT AAAAT AAAAT
1 A-AAAT AAAAT AA-AA--T AAAAT A-AAAT AAAAT AAAAT AAAAT
3999388 GAAGAAAAAA
Statistics
Matches: 76, Mismatches: 1, Indels: 22
0.77 0.01 0.22
Matches are distributed among these distances:
4 6 0.08
5 35 0.46
6 26 0.34
7 6 0.08
8 3 0.04
ACGTcount: A:0.75, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:3999378 original size:10 final size:10
Alignment explanation
Indices: 3999295--3999387 Score: 73
Period size: 11 Copynumber: 8.5 Consensus size: 10
3999285 CTAAGATAAA
*
3999295 AAAATAAAAG
1 AAAATAAAAT
3999305 AAAA-AAATAT
1 AAAATAAA-AT
3999315 ATAAATAATAAT
1 A-AAATAA-AAT
3999327 AAAAATAAAAAT
1 -AAAAT-AAAAT
3999339 AAAATAGAAAT
1 AAAATA-AAAT
3999350 AAAATAAGAATGT
1 AAAATAA-AA--T
3999363 AAAATACAAA-
1 AAAATA-AAAT
3999373 AAAATAAAAT
1 AAAATAAAAT
3999383 AAAAT
1 AAAAT
3999388 GAAGAAAAAA
Statistics
Matches: 70, Mismatches: 1, Indels: 24
0.74 0.01 0.25
Matches are distributed among these distances:
9 6 0.09
10 19 0.27
11 20 0.29
12 11 0.16
13 13 0.19
14 1 0.01
ACGTcount: A:0.75, C:0.01, G:0.04, T:0.19
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:3999395 original size:22 final size:21
Alignment explanation
Indices: 3999302--3999398 Score: 76
Period size: 22 Copynumber: 4.5 Consensus size: 21
3999292 AAAAAAATAA
*
3999302 AAGAAAAAAAT-ATAT-AAAT
1 AAGAAAAAAATAAAATAAAAT
*
3999321 AATAATAAAAATAAAAATAAAAT
1 AAGAA-AAAAAT-AAAATAAAAT
3999344 -AGAAATAAAATAAGAATGTAAAAT
1 AAGAAA-AAAATAA-AA--TAAAAT
*
3999368 -ACAAAAAAATAAAATAAAAT
1 AAGAAAAAAATAAAATAAAAT
3999388 GAAGAAAAAAA
1 -AAGAAAAAAA
3999399 GAACATAGAC
Statistics
Matches: 63, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
19 4 0.06
20 12 0.19
21 3 0.05
22 23 0.37
23 11 0.17
24 10 0.16
ACGTcount: A:0.75, C:0.01, G:0.06, T:0.18
Consensus pattern (21 bp):
AAGAAAAAAATAAAATAAAAT
Found at i:3999881 original size:56 final size:54
Alignment explanation
Indices: 3999792--3999910 Score: 152
Period size: 56 Copynumber: 2.2 Consensus size: 54
3999782 ATGAGAATTG
* *
3999792 ACTAAT-AAACATATACCCTCTCATTCTTCTTTAATCCTATAAAG-TATTCTTAAC
1 ACTAATAAAACACATACCCTCTCATTCTTCTTTAAT-CT-TAAAGATATTCTCAAC
* *
3999846 ACTAATAAATACACATACCCTCTTATTCTTTTTTAATCTTAAAGAATATTCTCAAC
1 ACTAATAAA-ACACATACCCTCTCATTCTTCTTTAATCTTAAAG-ATATTCTCAAC
3999902 ACTAATAAA
1 ACTAATAAA
3999911 CATATATCCA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
54 11 0.19
55 4 0.07
56 42 0.74
ACGTcount: A:0.39, C:0.22, G:0.02, T:0.38
Consensus pattern (54 bp):
ACTAATAAAACACATACCCTCTCATTCTTCTTTAATCTTAAAGATATTCTCAAC
Found at i:4000541 original size:2 final size:2
Alignment explanation
Indices: 4000534--4000562 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4000524 ATCTATTTAT
4000534 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4000563 GGATATGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4000890 original size:16 final size:16
Alignment explanation
Indices: 4000869--4000900 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
4000859 GGTAAACTCT
4000869 TAATTTTTGTGATTAG
1 TAATTTTTGTGATTAG
4000885 TAATTTTTGTGATTAG
1 TAATTTTTGTGATTAG
4000901 AAATCAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (16 bp):
TAATTTTTGTGATTAG
Found at i:4004111 original size:21 final size:21
Alignment explanation
Indices: 4004087--4004133 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
4004077 TATGAAAACA
4004087 TAAAAT-ATA-TATTTATTTTAT
1 TAAAATCATATTATTTA--TTAT
*
4004108 TAAATTCATATTATTTATTAT
1 TAAAATCATATTATTTATTAT
4004129 TAAAA
1 TAAAA
4004134 AATTAAATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 13 0.59
22 3 0.14
23 6 0.27
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
TAAAATCATATTATTTATTAT
Found at i:4004136 original size:24 final size:24
Alignment explanation
Indices: 4004091--4004153 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
4004081 AAAACATAAA
**
4004091 ATATATATTTATTTTATTAAATTC
1 ATATATATTTATTTTAAAAAATTC
4004115 ATAT-TATTTATTATTAAAAAATT-
1 ATATATATTTATT-TTAAAAAATTC
*
4004138 AAATCATA-TTATTTTA
1 ATAT-ATATTTATTTTA
4004154 TATTATATCA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
23 14 0.42
24 17 0.52
25 2 0.06
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (24 bp):
ATATATATTTATTTTAAAAAATTC
Found at i:4007368 original size:24 final size:24
Alignment explanation
Indices: 4007335--4007442 Score: 189
Period size: 24 Copynumber: 4.5 Consensus size: 24
4007325 TTCCAATACT
*
4007335 CCTGCTTTTGGTGCCACGAGCACC
1 CCTGCCTTTGGTGCCACGAGCACC
4007359 CCTGCCTTTGGTGCCACGAGCACC
1 CCTGCCTTTGGTGCCACGAGCACC
*
4007383 CCTGCCTTTGGTTCCACGAGCACC
1 CCTGCCTTTGGTGCCACGAGCACC
*
4007407 CCTGCCTTTGGTGCTACGAGCACC
1 CCTGCCTTTGGTGCCACGAGCACC
4007431 CCTGCCTTTGGT
1 CCTGCCTTTGGT
4007443 TCAACTGGAA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 80 1.00
ACGTcount: A:0.11, C:0.39, G:0.24, T:0.26
Consensus pattern (24 bp):
CCTGCCTTTGGTGCCACGAGCACC
Found at i:4007465 original size:48 final size:48
Alignment explanation
Indices: 4007335--4007465 Score: 129
Period size: 48 Copynumber: 2.7 Consensus size: 48
4007325 TTCCAATACT
* * * * * *
4007335 CCTGCTTTTGGTGCCACGAGCACCCCTGCCTTTGGTGCCACGAGCACC
1 CCTGCCTTTGGTTCAACGAGAACCCCAGCATTTGGTGCCACGAGCACC
* * * * *
4007383 CCTGCCTTTGGTTCCACGAGCACCCCTGCCTTTGGTGCTACGAGCACC
1 CCTGCCTTTGGTTCAACGAGAACCCCAGCATTTGGTGCCACGAGCACC
**
4007431 CCTGCCTTTGGTTCAACTG-GAAGTCCAGCATTTGG
1 CCTGCCTTTGGTTCAAC-GAGAACCCCAGCATTTGG
4007466 GAGCACTGGA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 72 0.99
49 1 0.01
ACGTcount: A:0.14, C:0.36, G:0.24, T:0.26
Consensus pattern (48 bp):
CCTGCCTTTGGTTCAACGAGAACCCCAGCATTTGGTGCCACGAGCACC
Found at i:4007563 original size:24 final size:24
Alignment explanation
Indices: 4007536--4007585 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
4007526 TGGAGCAGCA
4007536 AGCACACCTGCTTTTGGCACTTCT
1 AGCACACCTGCTTTTGGCACTTCT
* * **
4007560 AGCACTCCTGTTTTTGGTTCTTCT
1 AGCACACCTGCTTTTGGCACTTCT
4007584 AG
1 AG
4007586 TTCTGCATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.18, T:0.40
Consensus pattern (24 bp):
AGCACACCTGCTTTTGGCACTTCT
Found at i:4013362 original size:22 final size:22
Alignment explanation
Indices: 4013322--4013365 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
4013312 TGTATATTTA
** *
4013322 TATTTGTATTTCTAGAATTAAG
1 TATTTGTATCCCTAAAATTAAG
4013344 TATTTGTATCCCTAAAATTAAG
1 TATTTGTATCCCTAAAATTAAG
4013366 GACAGAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.45
Consensus pattern (22 bp):
TATTTGTATCCCTAAAATTAAG
Found at i:4017813 original size:2 final size:2
Alignment explanation
Indices: 4017806--4017832 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4017796 GAAGAAGGTC
4017806 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
4017833 CCTCACTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:4018121 original size:2 final size:2
Alignment explanation
Indices: 4018114--4018141 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4018104 TGTTGAAATG
4018114 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4018142 TCCTATCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4018909 original size:14 final size:14
Alignment explanation
Indices: 4018890--4018919 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
4018880 GATCATTGAA
4018890 GACGAATGATTCTT
1 GACGAATGATTCTT
4018904 GACGAATGATTCTT
1 GACGAATGATTCTT
4018918 GA
1 GA
4018920 GTCATAGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.33
Consensus pattern (14 bp):
GACGAATGATTCTT
Found at i:4029482 original size:17 final size:17
Alignment explanation
Indices: 4029460--4029495 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
4029450 TGGGTGTTGA
*
4029460 GTGGGGTGGGGGGTGGG
1 GTGGGGTGGGGGGGGGG
4029477 GTGGGGTGGGGGGGGGG
1 GTGGGGTGGGGGGGGGG
4029494 GT
1 GT
4029496 AAGGGGGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.83, T:0.17
Consensus pattern (17 bp):
GTGGGGTGGGGGGGGGG
Found at i:4029677 original size:23 final size:22
Alignment explanation
Indices: 4029651--4029697 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
4029641 TAAAATTAAA
4029651 TATTATAATT-TGATTTTGTTATT
1 TATTA-AATTATGATTTT-TTATT
*
4029674 TATTAATTTATGATTTTTTATT
1 TATTAAATTATGATTTTTTATT
4029696 TA
1 TA
4029698 AAATTTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (22 bp):
TATTAAATTATGATTTTTTATT
Found at i:4029697 original size:22 final size:22
Alignment explanation
Indices: 4029661--4029714 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
4029651 TATTATAATT
*
4029661 TGATTTTGTTATTTATTAATTT-A
1 TGATTTT-TTATTTA-AAATTTAA
4029684 TGATTTTTTATTTAAAATTTAA
1 TGATTTTTTATTTAAAATTTAA
*
4029706 TAATTTTTT
1 TGATTTTTT
4029715 TGTTATTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 5 0.18
22 16 0.57
23 7 0.25
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.65
Consensus pattern (22 bp):
TGATTTTTTATTTAAAATTTAA
Found at i:4030910 original size:12 final size:12
Alignment explanation
Indices: 4030895--4030919 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4030885 TGATTCTCCG
4030895 CATGATTTTGCT
1 CATGATTTTGCT
4030907 CATGATTTTGCT
1 CATGATTTTGCT
4030919 C
1 C
4030920 TCAGCATTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (12 bp):
CATGATTTTGCT
Found at i:4031063 original size:13 final size:13
Alignment explanation
Indices: 4031045--4031071 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4031035 TTGCAGAGCG
4031045 ACTTCACTTAGGC
1 ACTTCACTTAGGC
4031058 ACTTCACTTAGGC
1 ACTTCACTTAGGC
4031071 A
1 A
4031072 GGTAAGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (13 bp):
ACTTCACTTAGGC
Found at i:4032730 original size:15 final size:14
Alignment explanation
Indices: 4032708--4032755 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
4032698 ATAAAATATC
4032708 TTTTGTGAAATAAT
1 TTTTGTGAAATAAT
4032722 TTTTAGTGAAATAACT
1 TTTT-GTGAAATAA-T
* * *
4032738 TCTGGTGAAAGAAT
1 TTTTGTGAAATAAT
4032752 TTTT
1 TTTT
4032756 TATAAAAGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
14 7 0.26
15 17 0.63
16 3 0.11
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (14 bp):
TTTTGTGAAATAAT
Found at i:4034436 original size:94 final size:95
Alignment explanation
Indices: 4034332--4034510 Score: 254
Period size: 95 Copynumber: 1.9 Consensus size: 95
4034322 GTTCAAATAT
**
4034332 TTTTTTTAAGAATGCTAAGTAACAAATGTTTCTTATGG-AGA-TTTCTTTGAATTAACATAAATA
1 TTTTTTTAAGAATGCTAAGTAACAAACATTTCTTA-GGTAGATTTTCTTTGAATTAACATAAATA
*
4034395 AATAAGATGTCTTTCTTGACATACGTTGAAA
65 AATAAAATGTCTTTCTTGACATACGTTGAAA
* * * * *
4034426 TTTTTTTAAGAATGTTAGGTAACAAACATTTTTTAGGTAGATTTTTTTTTAATTAACATAAATAA
1 TTTTTTTAAGAATGCTAAGTAACAAACATTTCTTAGGTAGATTTTCTTTGAATTAACATAAATAA
*
4034491 ATAAAATGTGTTTCTTGACA
66 ATAAAATGTCTTTCTTGACA
4034511 ATCACCTTTG
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
93 2 0.03
94 33 0.45
95 39 0.53
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.43
Consensus pattern (95 bp):
TTTTTTTAAGAATGCTAAGTAACAAACATTTCTTAGGTAGATTTTCTTTGAATTAACATAAATAA
ATAAAATGTCTTTCTTGACATACGTTGAAA
Found at i:4035853 original size:14 final size:15
Alignment explanation
Indices: 4035826--4035855 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
4035816 CATATTAAAA
4035826 AATATGTGATATAAT
1 AATATGTGATATAAT
4035841 AATATGT-ATATAAT
1 AATATGTGATATAAT
4035855 A
1 A
4035856 TAGTACTCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
AATATGTGATATAAT
Found at i:4049693 original size:14 final size:13
Alignment explanation
Indices: 4049670--4049719 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
4049660 AAAAATAAAT
4049670 AAAATT-AAATTA
1 AAAATTAAAATTA
*
4049682 AAATTTAAAAATTA
1 AAAATT-AAAATTA
4049696 AAAATTAAAATTA
1 AAAATTAAAATTA
*
4049709 ATAGATTAAAA
1 A-AAATTAAAA
4049720 ATATTTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 5 0.16
13 8 0.25
14 19 0.59
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (13 bp):
AAAATTAAAATTA
Found at i:4049694 original size:8 final size:7
Alignment explanation
Indices: 4049676--4049721 Score: 58
Period size: 7 Copynumber: 6.6 Consensus size: 7
4049666 AAATAAAATT
4049676 AAATTAA
1 AAATTAA
*
4049683 AATTTAA
1 AAATTAA
4049690 AAATTAA
1 AAATTAA
4049697 AAATT-A
1 AAATTAA
4049703 AAATTAA
1 AAATTAA
*
4049710 TAGATTAA
1 -AAATTAA
4049718 AAAT
1 AAAT
4049722 ATTTTATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
6 6 0.18
7 21 0.64
8 6 0.18
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (7 bp):
AAATTAA
Found at i:4049700 original size:21 final size:21
Alignment explanation
Indices: 4049676--4049721 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
4049666 AAATAAAATT
4049676 AAATTAAAATTTAA-AAATTAA
1 AAATTAAAA-TTAATAAATTAA
*
4049697 AAATTAAAATTAATAGATTAA
1 AAATTAAAATTAATAAATTAA
4049718 AAAT
1 AAAT
4049722 ATTTTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
AAATTAAAATTAATAAATTAA
Found at i:4055740 original size:63 final size:63
Alignment explanation
Indices: 4055673--4055811 Score: 149
Period size: 65 Copynumber: 2.2 Consensus size: 63
4055663 TTATATGAGA
* * *
4055673 AGATTATTGAAAGCGTTTTTTACCAAAAAATGCCTTTAATAATTCTCT-T-TAA-TTTTTTGGAA
1 AGATTATTGAAAGCGTTTTTTACC-AAAAATACCTTCAATAA-TCT-TATGTAATTTTTTTAGAA
4055735 G
63 G
* ** *
4055736 AGATTATTGATGATGTTTTTTTTGCCAAAAATACCTTCAATAATCTTATGTAATTTTTTTAGAAG
1 AGATTATTGA--AAGCGTTTTTTACCAAAAATACCTTCAATAATCTTATGTAATTTTTTTAGAAG
4055801 AGATTATTGAA
1 AGATTATTGAA
4055812 GGTATTTTTG
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
62 1 0.02
63 15 0.23
64 18 0.28
65 30 0.47
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.44
Consensus pattern (63 bp):
AGATTATTGAAAGCGTTTTTTACCAAAAATACCTTCAATAATCTTATGTAATTTTTTTAGAAG
Found at i:4055756 original size:64 final size:65
Alignment explanation
Indices: 4055688--4055810 Score: 162
Period size: 65 Copynumber: 1.9 Consensus size: 65
4055678 ATTGAAAGCG
* * *
4055688 TTTTTTACCAAAAAATGCCTTTAATAATTCTCT-T-TAA-TTTTTTGGAAGAGATTATTGATGAT
1 TTTTTTACC-AAAAATACCTTCAATAA-TCT-TATGTAATTTTTTTAGAAGAGATTATTGATGAT
4055750 GTT
63 GTT
*
4055753 TTTTTTGCCAAAAATACCTTCAATAATCTTATGTAATTTTTTTAGAAGAGATTATTGA
1 TTTTTTACCAAAAATACCTTCAATAATCTTATGTAATTTTTTTAGAAGAGATTATTGA
4055811 AGGTATTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
62 1 0.02
63 4 0.08
64 18 0.35
65 28 0.55
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.46
Consensus pattern (65 bp):
TTTTTTACCAAAAATACCTTCAATAATCTTATGTAATTTTTTTAGAAGAGATTATTGATGATGTT
Found at i:4062184 original size:68 final size:68
Alignment explanation
Indices: 4062109--4062250 Score: 275
Period size: 68 Copynumber: 2.1 Consensus size: 68
4062099 ATATGAAATA
4062109 ATTTTAATATAAGATCATTATAATTATATATTATATATGTTTGTCATTTTTATTTGAAAGATTTT
1 ATTTTAATATAAGATCATTATAATTATATATTATATATGTTTGTCATTTTTATTTGAAAGATTTT
4062174 GAT
66 GAT
4062177 ATTTTAATATAAGATCATTATAATTATATATTATATATGTTTGTCATTTTTATTTGAAAGATTTT
1 ATTTTAATATAAGATCATTATAATTATATATTATATATGTTTGTCATTTTTATTTGAAAGATTTT
4062242 GAT
66 GAT
4062245 AGTTTT
1 A-TTTT
4062251 TCTTTAAATC
Statistics
Matches: 73, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
68 69 0.95
69 4 0.05
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.54
Consensus pattern (68 bp):
ATTTTAATATAAGATCATTATAATTATATATTATATATGTTTGTCATTTTTATTTGAAAGATTTT
GAT
Found at i:4062751 original size:2 final size:2
Alignment explanation
Indices: 4062744--4062768 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4062734 CCAGATCTTA
4062744 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
4062769 TTTTGAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:4070205 original size:31 final size:31
Alignment explanation
Indices: 4070169--4070230 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
4070159 ATCCTGAAAA
4070169 TGGCTCAAAGAAACATGGTGATCAATGTGGC
1 TGGCTCAAAGAAACATGGTGATCAATGTGGC
4070200 TGGCTCAAAGAAACATGGTGATCAATGTGGC
1 TGGCTCAAAGAAACATGGTGATCAATGTGGC
4070231 ACAACCATCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (31 bp):
TGGCTCAAAGAAACATGGTGATCAATGTGGC
Found at i:4078810 original size:190 final size:190
Alignment explanation
Indices: 4078481--4078860 Score: 688
Period size: 190 Copynumber: 2.0 Consensus size: 190
4078471 TTAGGGTTTA
4078481 AAGAGAATGAGTTTGGGGAAGAAGAATAACAAGTGAAGAGGCTGAAATGATCGGCCAAAAGAGAA
1 AAGAGAATGAGTTTGGGGAAGAAGAATAACAAGTGAAGAGGCTGAAATGATCGGCCAAAAGAGAA
*
4078546 GGGACCCGATTTGAACAAGCCAAAATGGTGTGCATAGTGCCCATTATACATGACCTGATTGATCG
66 GGGACCCGATTTGAACAAGCCAAAATGGTGTGCATAGTGCCCATTATACATGACCTGATCGATCG
* *
4078611 GTTGTGATGGAGGATCGATCGGTTATGTGTTTGAATTAGACTGATCGATTGGTTATAATG
131 GTGGTGATGGAGGATCGATCGGTTATGTGTTTGAATTAGACTGATCGATCGGTTATAATG
* * *
4078671 AAGAGAATGAGTTTGGGGAAGAAGAATAACAGGTGAAGAGGTTGAAATGATCGGCCAAAGGAGAA
1 AAGAGAATGAGTTTGGGGAAGAAGAATAACAAGTGAAGAGGCTGAAATGATCGGCCAAAAGAGAA
4078736 GGGACCCGATTTGAACAAGCCAAAATGGTGTGCATAGTGCCCATTATACATGACCTGATCGATCG
66 GGGACCCGATTTGAACAAGCCAAAATGGTGTGCATAGTGCCCATTATACATGACCTGATCGATCG
* *
4078801 GTGGTGATGGAGGATCGATCGGTTATGTGTTTGCATTGGACTGATCGATCGGTTATAATG
131 GTGGTGATGGAGGATCGATCGGTTATGTGTTTGAATTAGACTGATCGATCGGTTATAATG
4078861 GGGGATCGAT
Statistics
Matches: 182, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
190 182 1.00
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.25
Consensus pattern (190 bp):
AAGAGAATGAGTTTGGGGAAGAAGAATAACAAGTGAAGAGGCTGAAATGATCGGCCAAAAGAGAA
GGGACCCGATTTGAACAAGCCAAAATGGTGTGCATAGTGCCCATTATACATGACCTGATCGATCG
GTGGTGATGGAGGATCGATCGGTTATGTGTTTGAATTAGACTGATCGATCGGTTATAATG
Found at i:4078869 original size:21 final size:21
Alignment explanation
Indices: 4078843--4078896 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
4078833 GCATTGGACT
4078843 GATCGATCGGTTATAATGGGG
1 GATCGATCGGTTATAATGGGG
4078864 GATCGATCGGTTATAATGGGG
1 GATCGATCGGTTATAATGGGG
4078885 GATCGATCGGTT
1 GATCGATCGGTT
4078897 CTTCATGGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.22, C:0.11, G:0.37, T:0.30
Consensus pattern (21 bp):
GATCGATCGGTTATAATGGGG
Found at i:4079263 original size:116 final size:116
Alignment explanation
Indices: 4079059--4079292 Score: 459
Period size: 116 Copynumber: 2.0 Consensus size: 116
4079049 GGTGAACTTG
4079059 GTATGATGAATGCTCCTTAAAATGAATACCTTGATGTTATGATGAATGTTGCAATCTTGAGTGAT
1 GTATGATGAATGCTCCTTAAAATGAATACCTTGATGTTATGATGAATGTTGCAATCTTGAGTGAT
4079124 CAAATGTATGTCTATATTTTTGTTAAGCTTGTGTATGATTGTATGATACAT
66 CAAATGTATGTCTATATTTTTGTTAAGCTTGTGTATGATTGTATGATACAT
*
4079175 GTATGATGAATGCTCCTTAAAATGAATATCTTGATGTTATGATGAATGTTGCAATCTTGAGTGAT
1 GTATGATGAATGCTCCTTAAAATGAATACCTTGATGTTATGATGAATGTTGCAATCTTGAGTGAT
4079240 CAAATGTATGTCTATATTTTTGTTAAGCTTGTGTATGATTGTATGATACAT
66 CAAATGTATGTCTATATTTTTGTTAAGCTTGTGTATGATTGTATGATACAT
4079291 GT
1 GT
4079293 TTGAATGCTC
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 117 1.00
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (116 bp):
GTATGATGAATGCTCCTTAAAATGAATACCTTGATGTTATGATGAATGTTGCAATCTTGAGTGAT
CAAATGTATGTCTATATTTTTGTTAAGCTTGTGTATGATTGTATGATACAT
Found at i:4081505 original size:9 final size:9
Alignment explanation
Indices: 4081491--4081542 Score: 59
Period size: 9 Copynumber: 5.7 Consensus size: 9
4081481 AAAAATTACC
4081491 TTTGATGAT
1 TTTGATGAT
*
4081500 TTTGATGGT
1 TTTGATGAT
*
4081509 ATTGATGAT
1 TTTGATGAT
*
4081518 CTTTGATAAT
1 -TTTGATGAT
*
4081528 ATTGATGAT
1 TTTGATGAT
4081537 TTTGAT
1 TTTGAT
4081543 TGTATGAACA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
9 27 0.79
10 7 0.21
ACGTcount: A:0.25, C:0.02, G:0.21, T:0.52
Consensus pattern (9 bp):
TTTGATGAT
Found at i:4081913 original size:20 final size:21
Alignment explanation
Indices: 4081867--4081919 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
4081857 GTTTTGATAG
*
4081867 AAGGGATCGAT-CCCTAAAGGA
1 AAGGGATCGATCCCCT-AAGCA
4081888 AA-GGATCGATCCCCT-AGCA
1 AAGGGATCGATCCCCTAAGCA
4081907 AAGGGATCGATCC
1 AAGGGATCGATCC
4081920 ATCTTTCTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 5 0.17
20 18 0.62
21 6 0.21
ACGTcount: A:0.34, C:0.25, G:0.26, T:0.15
Consensus pattern (21 bp):
AAGGGATCGATCCCCTAAGCA
Found at i:4082697 original size:8 final size:8
Alignment explanation
Indices: 4082684--4082783 Score: 101
Period size: 8 Copynumber: 12.5 Consensus size: 8
4082674 AACATACATA
4082684 TGTATGTG
1 TGTATGTG
4082692 TGTATGTG
1 TGTATGTG
*
4082700 CGTATGTG
1 TGTATGTG
*
4082708 CGTATGTG
1 TGTATGTG
*
4082716 CGTATGTG
1 TGTATGTG
*
4082724 CGTATGTG
1 TGTATGTG
*
4082732 CGTATGTG
1 TGTATGTG
* *
4082740 CGTATGTA
1 TGTATGTG
*
4082748 TGTATGTA
1 TGTATGTG
*
4082756 TGTATGTA
1 TGTATGTG
*
4082764 TGTATGTA
1 TGTATGTG
*
4082772 TGTATGTA
1 TGTATGTG
4082780 TGTA
1 TGTA
4082784 AGTTTTGGAG
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 89 1.00
ACGTcount: A:0.18, C:0.06, G:0.32, T:0.44
Consensus pattern (8 bp):
TGTATGTG
Found at i:4082706 original size:16 final size:16
Alignment explanation
Indices: 4082685--4082746 Score: 115
Period size: 16 Copynumber: 3.9 Consensus size: 16
4082675 ACATACATAT
*
4082685 GTATGTGTGTATGTGC
1 GTATGTGCGTATGTGC
4082701 GTATGTGCGTATGTGC
1 GTATGTGCGTATGTGC
4082717 GTATGTGCGTATGTGC
1 GTATGTGCGTATGTGC
4082733 GTATGTGCGTATGT
1 GTATGTGCGTATGT
4082747 ATGTATGTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.13, C:0.10, G:0.37, T:0.40
Consensus pattern (16 bp):
GTATGTGCGTATGTGC
Found at i:4082720 original size:24 final size:24
Alignment explanation
Indices: 4082685--4082746 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
4082675 ACATACATAT
*
4082685 GTATGTGTGTATGTGCGTATGTGC
1 GTATGTGCGTATGTGCGTATGTGC
4082709 GTATGTGCGTATGTGCGTATGTGC
1 GTATGTGCGTATGTGCGTATGTGC
4082733 GTATGTGCGTATGT
1 GTATGTGCGTATGT
4082747 ATGTATGTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.13, C:0.10, G:0.37, T:0.40
Consensus pattern (24 bp):
GTATGTGCGTATGTGCGTATGTGC
Found at i:4082750 original size:12 final size:12
Alignment explanation
Indices: 4082741--4082783 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
4082731 GCGTATGTGC
4082741 GTATGTATGTAT
1 GTATGTATGTAT
4082753 GTATGTATGTAT
1 GTATGTATGTAT
4082765 GTATGTATGTAT
1 GTATGTATGTAT
4082777 GTATGTA
1 GTATGTA
4082784 AGTTTTGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (12 bp):
GTATGTATGTAT
Found at i:4082844 original size:95 final size:95
Alignment explanation
Indices: 4082741--4082930 Score: 290
Period size: 95 Copynumber: 2.0 Consensus size: 95
4082731 GCGTATGTGC
* * * *
4082741 GTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAAGTTTTGGAGTTATTTTTTGTT
1 GTATGTATGTATGTATATATGTATGTATGTATATATATATCTAAGTTTTGGAGTTATTTTTTGTT
4082806 GCTTTTACATCATCTCCTAGTCTTATCTTA
66 GCTTTTACATCATCTCCTAGTCTTATCTTA
* * * * * *
4082836 GTATGTATGTATGTCTATGTGTGTGTGTGTATATATATGTCTCAGTTTTGGAGTTATTTTTTGTT
1 GTATGTATGTATGTATATATGTATGTATGTATATATATATCTAAGTTTTGGAGTTATTTTTTGTT
4082901 GCTTTTACATCATCTCCTAGTCTTATCTTA
66 GCTTTTACATCATCTCCTAGTCTTATCTTA
4082931 ATCCATTTGT
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
95 85 1.00
ACGTcount: A:0.19, C:0.10, G:0.19, T:0.52
Consensus pattern (95 bp):
GTATGTATGTATGTATATATGTATGTATGTATATATATATCTAAGTTTTGGAGTTATTTTTTGTT
GCTTTTACATCATCTCCTAGTCTTATCTTA
Found at i:4085024 original size:237 final size:237
Alignment explanation
Indices: 4084551--4085025 Score: 749
Period size: 239 Copynumber: 2.0 Consensus size: 237
4084541 AAACAACTAC
* * *
4084551 AAGATTAAACCCATTGATACCCCTTCTTAAGGATAAAATATCTGAGCTTATCATGAATATATCCA
1 AAGATTAAACACATCGATACCCCTTCTTAAGGATAAAATATCTGAGCTTATCATGAACATATCCA
*
4084616 GGCATAAGTCATAAATCATAGAATCCTCAACTTTTGTTGCCTTTACATTTATAAATATATAATTT
66 GGCATAAGTCATAAATCATAGAATCCTCAACTTTTGTTGCCTTTACATTTATAAATATATAATTA
* * * *
4084681 CTGTTCTTTAATATATGTCTCATTTTACTCTTTGGTTTCATTAGTAATAAGACTTTGCTGCTCGT
131 CTGTCCTTTAAGAAATGTCTCATTTTACTC--TGGTTTCATTAGTAATAAGACTTTGCTGCTCAT
4084746 GTATCTTAAGCTAAAAATTGAAGGTCTTCAGAAATATTCTATAT
194 GTATCTTAAGCTAAAAATTGAAGGTCTTCAGAAATATTCTATAT
*
4084790 AAGATTAAACACATCGATAGCCCTTCTTAAGGATAAAATATCTGAGCTTATCATGAACATA-CCA
1 AAGATTAAACACATCGATACCCCTTCTTAAGGATAAAATATCTGAGCTTATCATGAACATATCCA
*
4084854 GGCATAAGTCATAAATCATAGAATCCTCAACTTTTGTT-CTCTTTACGTTTATAAATATTATAAT
66 GGCATAAGTCATAAATCATAGAATCCTCAACTTTTGTTGC-CTTTACATTTATAAATA-TATAAT
*
4084918 TACTGTCCTTTAAGAAATTTCTCATTTTACTC-GAGTTTCATTAGTAATAAGACTTTGCTGCTCA
129 TACTGTCCTTTAAGAAATGTCTCATTTTACTCTG-GTTTCATTAGTAATAAGACTTTGCTGCTCA
* * **
4084982 TTTATCTTAAGCTAAAAGTTGAAGGTCTTTGGAAATATTCTATA
193 TGTATCTTAAGCTAAAAATTGAAGGTCTTCAGAAATATTCTATA
4085026 CAGTTCCTAG
Statistics
Matches: 218, Mismatches: 15, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
236 1 0.00
237 70 0.32
238 57 0.26
239 90 0.41
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.38
Consensus pattern (237 bp):
AAGATTAAACACATCGATACCCCTTCTTAAGGATAAAATATCTGAGCTTATCATGAACATATCCA
GGCATAAGTCATAAATCATAGAATCCTCAACTTTTGTTGCCTTTACATTTATAAATATATAATTA
CTGTCCTTTAAGAAATGTCTCATTTTACTCTGGTTTCATTAGTAATAAGACTTTGCTGCTCATGT
ATCTTAAGCTAAAAATTGAAGGTCTTCAGAAATATTCTATAT
Found at i:4088315 original size:2 final size:2
Alignment explanation
Indices: 4088308--4088341 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
4088298 TAGTTTTATG
4088308 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4088342 GGACGACTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4092614 original size:2 final size:2
Alignment explanation
Indices: 4092607--4092639 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4092597 TTATACTGTA
4092607 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
4092640 TTGCACTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:4094799 original size:1 final size:1
Alignment explanation
Indices: 4094793--4094817 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
4094783 TCTTTATCTC
4094793 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
4094818 GAGTGGCACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:4098884 original size:2 final size:2
Alignment explanation
Indices: 4098877--4098909 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4098867 TATAATCTCT
4098877 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4098910 TTCCGGTATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4107312 original size:6 final size:6
Alignment explanation
Indices: 4107301--4107331 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
4107291 ATTTCAATGA
4107301 TCCTAT TCCTAT TCCTAT TCCTAT TCCTAT T
1 TCCTAT TCCTAT TCCTAT TCCTAT TCCTAT T
4107332 ACCCTTGGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (6 bp):
TCCTAT
Found at i:4108066 original size:2 final size:2
Alignment explanation
Indices: 4108059--4108092 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
4108049 CCTCTTGCCC
4108059 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
4108093 TTGCTTTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:4110251 original size:55 final size:55
Alignment explanation
Indices: 4110186--4110326 Score: 160
Period size: 54 Copynumber: 2.6 Consensus size: 55
4110176 ATTTTAAAAA
* *
4110186 ATTTTAATTTTAAGAAAAACTTGATATTTCAAAATTTTCCTAAAATCTCAAAATT
1 ATTTTTATTTTAAGAAAAAATTGATATTTCAAAATTTTCCTAAAATCTCAAAATT
** * ** **
4110241 ATTTTTATTTT-AGAAAAAATTGATATTTCAACTTTTTCCTCATTTCTTGAAATT
1 ATTTTTATTTTAAGAAAAAATTGATATTTCAAAATTTTCCTAAAATCTCAAAATT
* *
4110295 ATTTTTGTTTTAA-AGAAAATTTGATATTTCAA
1 ATTTTTATTTTAAGA-AAAAATTGATATTTCAA
4110327 TCTCTTTGTC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
54 46 0.63
55 27 0.37
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.48
Consensus pattern (55 bp):
ATTTTTATTTTAAGAAAAAATTGATATTTCAAAATTTTCCTAAAATCTCAAAATT
Found at i:4110453 original size:16 final size:16
Alignment explanation
Indices: 4110432--4110475 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
4110422 CAACTCTGTC
*
4110432 CTCATTTTAAAAAAAT
1 CTCATTTTAAAAAAAA
*
4110448 CTCATTTAAAAAAAAA
1 CTCATTTTAAAAAAAA
4110464 CTCA-TTTAAAAA
1 CTCATTTTAAAAA
4110476 TATATTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 7 0.28
16 18 0.72
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.32
Consensus pattern (16 bp):
CTCATTTTAAAAAAAA
Found at i:4122780 original size:16 final size:17
Alignment explanation
Indices: 4122753--4122784 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
4122743 TAGCCTATTA
4122753 TTATTAGTTTGGCCTTC
1 TTATTAGTTTGGCCTTC
4122770 TTATT-GTTTGGCCTT
1 TTATTAGTTTGGCCTT
4122785 ATCTTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.09, C:0.16, G:0.19, T:0.56
Consensus pattern (17 bp):
TTATTAGTTTGGCCTTC
Found at i:4126896 original size:127 final size:127
Alignment explanation
Indices: 4126670--4126922 Score: 373
Period size: 127 Copynumber: 2.0 Consensus size: 127
4126660 CAACTATTTC
* * *
4126670 AATAATGCTCATTACATTATGAGAAAAAACAATCAAAAAATTTTCGAATAATATTTATTAAAATA
1 AATAATGCTCATTACATTATAAGAAAAAACAATAAAAAAATTTTCCAATAATATTTATTAAAATA
* *
4126735 TAAACTCAATATACATACACTTTTTTTGTCATTCCACATCCATATATATACATATGTATATT
66 TAAACTCAATATACATACACTTTTTTTGTCATTCCACATACATATATATACATATATATATT
* *
4126797 AATAATGCTCATTACATTATAAGAAAAAACCATAAAAAAATTTTCCTATAATATTTTATTAAAAT
1 AATAATGCTCATTACATTATAAGAAAAAACAATAAAAAAATTTTCCAATAATA-TTTATTAAAAT
* * * * * *
4126862 ATAAACTCAATATACCTGCAC-TTTTTTGTTATTCCATATATATATATATATATATATATAT
65 ATAAACTCAATATACATACACTTTTTTTGTCATTCCACATACATATATATACATATATATAT
4126923 ATCACTTCAG
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
127 82 0.73
128 30 0.27
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.39
Consensus pattern (127 bp):
AATAATGCTCATTACATTATAAGAAAAAACAATAAAAAAATTTTCCAATAATATTTATTAAAATA
TAAACTCAATATACATACACTTTTTTTGTCATTCCACATACATATATATACATATATATATT
Found at i:4126902 original size:2 final size:2
Alignment explanation
Indices: 4126897--4126924 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4126887 TTGTTATTCC
4126897 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4126925 CACTTCAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4130547 original size:42 final size:43
Alignment explanation
Indices: 4130488--4130588 Score: 150
Period size: 42 Copynumber: 2.3 Consensus size: 43
4130478 TACAGAGCTG
4130488 TTTTGAGGACTTTGAGGACTATGCACGTTCTCATCATGGC-TC
1 TTTTGAGGACTTTGAGGACTATGCACGTTCTCATCATGGCTTC
* **
4130530 TTTTGAGGACTTTGAGGACTATGCATGTTCTCATTGTGGCTTC
1 TTTTGAGGACTTTGAGGACTATGCACGTTCTCATCATGGCTTC
4130573 TCTTTCGAGGACTTTG
1 T-TTT-GAGGACTTTG
4130589 GGTATCTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
42 37 0.70
43 3 0.06
44 3 0.06
45 10 0.19
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.40
Consensus pattern (43 bp):
TTTTGAGGACTTTGAGGACTATGCACGTTCTCATCATGGCTTC
Found at i:4130600 original size:36 final size:35
Alignment explanation
Indices: 4130560--4130732 Score: 125
Period size: 36 Copynumber: 4.8 Consensus size: 35
4130550 ATGCATGTTC
* *
4130560 TCATTGTGGCTTCTCTTTCGAGGACTTTGGGTATCT
1 TCATTGTGGCTTCTCTTT-GAGGACTTTGCGCATCT
* * *
4130596 TCATTGTGGCTTATATGTTGAGGACTTTGTGCATCT
1 TCATTGTGGCTTCTCT-TTGAGGACTTTGCGCATCT
* * * * * * * *
4130632 TTATTATAGTTTATATGTTGAGGACTATGCACAT-T
1 TCATTGTGGCTTCTCT-TTGAGGACTTTGCGCATCT
*
4130667 CTCATTGTGGCTTCTCTTTTGAGGACTTTGCGTATCT
1 -TCATTGTGGCTTCTC-TTTGAGGACTTTGCGCATCT
* *
4130704 TCATCGTGGCTTAC-CTTTTGAGGAGTTTG
1 TCATTGTGGCTT-CTC-TTTGAGGACTTTG
4130733 AGTGGTATCA
Statistics
Matches: 110, Mismatches: 22, Indels: 10
0.77 0.15 0.07
Matches are distributed among these distances:
35 1 0.01
36 104 0.95
37 5 0.05
ACGTcount: A:0.16, C:0.16, G:0.23, T:0.45
Consensus pattern (35 bp):
TCATTGTGGCTTCTCTTTGAGGACTTTGCGCATCT
Found at i:4130796 original size:36 final size:36
Alignment explanation
Indices: 4130756--4130840 Score: 143
Period size: 36 Copynumber: 2.4 Consensus size: 36
4130746 AGGCTTATAC
4130756 CTTGAGGACTTTGGGTCTTTTCCTTCTGGCTCATCT
1 CTTGAGGACTTTGGGTCTTTTCCTTCTGGCTCATCT
* *
4130792 CTTGAGGACTTTGTGTCTTTTCCTTCTGGCTTATCT
1 CTTGAGGACTTTGGGTCTTTTCCTTCTGGCTCATCT
*
4130828 CATGAGGACTTTG
1 CTTGAGGACTTTG
4130841 TATATTTTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.45
Consensus pattern (36 bp):
CTTGAGGACTTTGGGTCTTTTCCTTCTGGCTCATCT
Found at i:4134916 original size:12 final size:12
Alignment explanation
Indices: 4134899--4134935 Score: 58
Period size: 11 Copynumber: 3.1 Consensus size: 12
4134889 ATTTTATTAT
4134899 ATTTAAAAAATA
1 ATTTAAAAAATA
4134911 ATTT-AAAAATA
1 ATTTAAAAAATA
4134922 ATTTAAAATAATA
1 ATTTAAAA-AATA
4134935 A
1 A
4134936 AATAAGTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 11 0.48
12 7 0.30
13 5 0.22
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATTTAAAAAATA
Found at i:4135179 original size:26 final size:26
Alignment explanation
Indices: 4135150--4135199 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
4135140 TCAAATTCGA
*
4135150 TTTTA-TTTTATTTATTTATTTTAAAT
1 TTTTATTTTTATATA-TTATTTTAAAT
*
4135176 TTTTGTTTTTATATATTATTTTAA
1 TTTTATTTTTATATATTATTTTAA
4135200 TATAATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 13 0.62
27 8 0.38
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (26 bp):
TTTTATTTTTATATATTATTTTAAAT
Found at i:4136916 original size:20 final size:20
Alignment explanation
Indices: 4136893--4136935 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
4136883 ATAAATATAG
4136893 ATATATA-TATTAAAATTTTA
1 ATATATATTATTAAAA-TTTA
* *
4136913 ATATTTATTATTTAAATTTA
1 ATATATATTATTAAAATTTA
4136933 ATA
1 ATA
4136936 AAATAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATATATTATTAAAATTTA
Found at i:4137765 original size:15 final size:16
Alignment explanation
Indices: 4137745--4137778 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
4137735 TCTGAATTAA
*
4137745 TAAAATATTATTTT-T
1 TAAAATAATATTTTAT
4137760 TAAAATAATATTTTAT
1 TAAAATAATATTTTAT
4137776 TAA
1 TAA
4137779 TATCATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TAAAATAATATTTTAT
Found at i:4139494 original size:31 final size:30
Alignment explanation
Indices: 4139422--4139498 Score: 93
Period size: 30 Copynumber: 2.5 Consensus size: 30
4139412 ATCTACACAG
* *
4139422 AATTATTTCAAAGTTTAAGGATCAAAATAA
1 AATTATTTCAAATTTTAAAGATCAAAATAA
*
4139452 AATTCTTTCAAATTTTAAAGATC-AAATACGA
1 AATTATTTCAAATTTTAAAGATCAAAATA--A
*
4139483 AATTATCTCAAATTTT
1 AATTATTTCAAATTTT
4139499 TATATATTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
29 5 0.12
30 20 0.50
31 15 0.38
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.38
Consensus pattern (30 bp):
AATTATTTCAAATTTTAAAGATCAAAATAA
Found at i:4139666 original size:18 final size:19
Alignment explanation
Indices: 4139639--4139686 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
4139629 TTAAAAATTC
* *
4139639 AATATCATTTTTAAATAAA
1 AATATTATTTTCAAATAAA
* *
4139658 AA-ATTATTTTCCATTAAA
1 AATATTATTTTCAAATAAA
4139676 AATATTATTTT
1 AATATTATTTT
4139687 ACTAAAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (19 bp):
AATATTATTTTCAAATAAA
Found at i:4139692 original size:17 final size:17
Alignment explanation
Indices: 4139654--4139696 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
4139644 CATTTTTAAA
*
4139654 TAAAAAATTATTTTCCAT
1 TAAAAAATTATTTT-CAC
4139672 TAAAAATATTATTTT-AC
1 TAAAAA-ATTATTTTCAC
4139689 TAAAAAAT
1 TAAAAAAT
4139697 CATAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 2 0.09
17 7 0.30
18 6 0.26
19 8 0.35
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAAAAATTATTTTCAC
Found at i:4139694 original size:18 final size:19
Alignment explanation
Indices: 4139655--4139696 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
4139645 ATTTTTAAAT
* *
4139655 AAAAA-ATTATTTTCCATT
1 AAAAATATTATTTTACATA
4139673 AAAAATATTATTTTAC-TA
1 AAAAATATTATTTTACATA
4139691 AAAAAT
1 AAAAAT
4139697 CATAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAAATATTATTTTACATA
Found at i:4155965 original size:12 final size:12
Alignment explanation
Indices: 4155948--4155993 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
4155938 TCATGTGTAG
4155948 TTTTTGAAATTT
1 TTTTTGAAATTT
4155960 TTTTTGAAA---
1 TTTTTGAAATTT
4155969 TTTTT--AATTT
1 TTTTTGAAATTT
4155979 TTTTTGAAATTT
1 TTTTTGAAATTT
4155991 TTT
1 TTT
4155994 ATCTTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
7 2 0.07
9 5 0.17
10 5 0.17
12 17 0.59
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.70
Consensus pattern (12 bp):
TTTTTGAAATTT
Found at i:4155979 original size:19 final size:19
Alignment explanation
Indices: 4155955--4155992 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
4155945 TAGTTTTTGA
4155955 AATTTTTTTTGAAATTTTT
1 AATTTTTTTTGAAATTTTT
4155974 AATTTTTTTTGAAATTTTT
1 AATTTTTTTTGAAATTTTT
4155993 TATCTTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (19 bp):
AATTTTTTTTGAAATTTTT
Found at i:4156254 original size:13 final size:13
Alignment explanation
Indices: 4156236--4156262 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4156226 AAAGATATTG
4156236 TAAATAATATTAT
1 TAAATAATATTAT
4156249 TAAATAATATTAT
1 TAAATAATATTAT
4156262 T
1 T
4156263 TAGTACACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAATAATATTAT
Found at i:4157279 original size:21 final size:22
Alignment explanation
Indices: 4157253--4157310 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 22
4157243 TTATATATAT
4157253 ATATATTATTTATCTATTAACA
1 ATATATTATTTATCTATTAACA
*
4157275 TATATTATTATTTATCTATTAA-T
1 -ATA-TATTATTTATCTATTAACA
*
4157298 ATATATTTTTTAT
1 ATATATTATTTAT
4157311 TTTTATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 9 0.28
22 3 0.09
23 3 0.09
24 17 0.53
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (22 bp):
ATATATTATTTATCTATTAACA
Found at i:4157283 original size:24 final size:24
Alignment explanation
Indices: 4157249--4157304 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
4157239 GTATTTATAT
4157249 ATATATATATTATTTATCTATTAAC
1 ATATAT-TATTATTTATCTATTAAC
*
4157274 ATATATTATTATTTATCTATTAAT
1 ATATATTATTATTTATCTATTAAC
4157298 ATATATT
1 ATATATT
4157305 TTTTATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 24 0.80
25 6 0.20
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (24 bp):
ATATATTATTATTTATCTATTAAC
Found at i:4158044 original size:3 final size:3
Alignment explanation
Indices: 4158038--4158084 Score: 69
Period size: 3 Copynumber: 15.7 Consensus size: 3
4158028 TTTTTTTCTT
*
4158038 TTA TTA TTA TTA TTA TTA TT- TCTT TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
4158083 TT
1 TT
4158085 TATTGATTAG
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
2 1 0.02
3 39 0.95
4 1 0.02
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:4158064 original size:24 final size:24
Alignment explanation
Indices: 4158032--4158081 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
4158022 AAAAGTTTTT
4158032 TTTCTTTTATTATTATTATTATTA
1 TTTCTTTTATTATTATTATTATTA
4158056 TTTCTTTTATTATTATTATTATTA
1 TTTCTTTTATTATTATTATTATTA
4158080 TT
1 TT
4158082 ATTTATTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTCTTTTATTATTATTATTATTA
Found at i:4158134 original size:6 final size:6
Alignment explanation
Indices: 4158119--4158166 Score: 66
Period size: 6 Copynumber: 8.5 Consensus size: 6
4158109 GTATTTCTTA
*
4158119 TTTA-T TTTATT TTTATT TTTATT TTTATC TTTA-T TTTA-T TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
4158164 TTT
1 TTT
4158167 TGGTTTTCTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
5 13 0.33
6 26 0.67
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:4158134 original size:29 final size:27
Alignment explanation
Indices: 4158102--4158164 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 27
4158092 TAGATTAGAA
4158102 TTATTTAGTATTTCTTA-TTTATTTTATTT
1 TTATTT-GTATTT-TTACTTTATTTTA-TT
*
4158131 TTATTTTTATTTTTATCTTTATTTTATT
1 TTATTTGTATTTTTA-CTTTATTTTATT
4158159 TTATTT
1 TTATTT
4158165 TTTGGTTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
27 3 0.10
28 13 0.42
29 15 0.48
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.76
Consensus pattern (27 bp):
TTATTTGTATTTTTACTTTATTTTATT
Found at i:4158364 original size:57 final size:58
Alignment explanation
Indices: 4158194--4158470 Score: 355
Period size: 58 Copynumber: 4.8 Consensus size: 58
4158184 AATTCCAAAA
* * *
4158194 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATTAATTTTCCTTGAAAATAAGTTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAATTTTCT
* *
4158252 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAATTTTCT
* *
4158310 AAAAAATATTTTCGAGAAAAAGTTGAAAGTATCAA-TTTTCTTTGAAAAT-AATTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAAATTTTCT
* * * *
4158367 AAAAAAAGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTC-
1 -AAAAAA--TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAATTTTCT
* * *
4158427 AGAAAAACATTATAG-GGAAAAGTTGAAAGTATCAATTTTTCTTG
1 A-AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
4158471 TACAAAAGCA
Statistics
Matches: 194, Mismatches: 18, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
57 41 0.21
58 104 0.54
59 1 0.01
60 37 0.19
61 11 0.06
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAATTTTCT
Found at i:4158447 original size:118 final size:115
Alignment explanation
Indices: 4158210--4158470 Score: 346
Period size: 118 Copynumber: 2.2 Consensus size: 115
4158200 TATTTTTGAG
*
4158210 GAAAAGTTGAAAGTATTAATTTTCCTTGAAAATAAGTTTTCTAAAAAATATTTTTGAGAAAAAGT
1 GAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCTAAAAAATATTTTTGAGAAAAAGT
* * * * *
4158275 TGAAAGTATCAATTTTTCTTAAAAATAAATTTTCTAAAAAATATTTTCGA
66 TGAAAGTATCAATTTTTCTCAAAAATAAAGTTTCTAAAAAACATTATAGA
* * *
4158325 GAAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAA-TTTTCTAAAAAAAGTTTTTTTTGAGGAA
1 G-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT-AAAAAA--TATTTTTGAGAAA
* * *
4158389 AAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTC-AGAAAAACATTATAGG
62 AAGTTGAAAGTATCAATTTTTCTCAAAAATAAAGTTTCTA-AAAAACATTATAGA
*
4158443 GAAAAGTTGAAAGTATCAATTTTTCTTG
1 GAAAAGTTGAAAGTATCAATTTTCCTTG
4158471 TACAAAAGCA
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
115 7 0.06
116 38 0.30
117 26 0.20
118 56 0.44
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.38
Consensus pattern (115 bp):
GAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCTAAAAAATATTTTTGAGAAAAAGT
TGAAAGTATCAATTTTTCTCAAAAATAAAGTTTCTAAAAAACATTATAGA
Found at i:4158549 original size:16 final size:16
Alignment explanation
Indices: 4158522--4158561 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
4158512 TAAAGCTGAA
4158522 TTATTT-TTTTTCATT
1 TTATTTCTTTTTCATT
*
4158537 TTATTTCTTTTTCTTT
1 TTATTTCTTTTTCATT
*
4158553 TTGTTTCTT
1 TTATTTCTT
4158562 GAATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.07, C:0.10, G:0.03, T:0.80
Consensus pattern (16 bp):
TTATTTCTTTTTCATT
Found at i:4168968 original size:10 final size:10
Alignment explanation
Indices: 4168953--4168982 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
4168943 ATGGAAATTA
*
4168953 AAAAAAAAAT
1 AAAAAAAAAG
4168963 AAAAAAAAAG
1 AAAAAAAAAG
4168973 AAAAAAAAAG
1 AAAAAAAAAG
4168983 TGGATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:4170062 original size:42 final size:41
Alignment explanation
Indices: 4170006--4170120 Score: 149
Period size: 42 Copynumber: 2.8 Consensus size: 41
4169996 CAAGGAGCCG
* *
4170006 TTTATTTTCAAAAGTCGTTGAGCCTTTGATTAAAAGAGTAA
1 TTTATTTTCAAAAGTCGTTGAGCCTCTGATTAAAAGAGCAA
* * * * *
4170047 TTTACTTTTTAAAAGTCGTTGAGCCTCTAATTAGAGGAGCCA
1 TTTA-TTTTCAAAAGTCGTTGAGCCTCTGATTAAAAGAGCAA
*
4170089 TGTATTTTCAAAAGTCGTTGAGCCTCTGATTA
1 TTTATTTTCAAAAGTCGTTGAGCCTCTGATTA
4170121 GCCTAGTCCA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 30 0.48
42 33 0.52
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (41 bp):
TTTATTTTCAAAAGTCGTTGAGCCTCTGATTAAAAGAGCAA
Found at i:4170113 original size:41 final size:41
Alignment explanation
Indices: 4169998--4170121 Score: 158
Period size: 41 Copynumber: 3.0 Consensus size: 41
4169988 ATGATTGTCA
* * *
4169998 AGGAGCCGTTTATTTTCAAAAGTCGTTGAGCCTTTGATTAA
1 AGGAGCCATTTATTTTCAAAAGTCGTTGAGCCTCTGATTAG
* ** * *
4170039 AAGAGTAATTTACTTTTTAAAAGTCGTTGAGCCTCTAATTAG
1 AGGAGCCATTTA-TTTTCAAAAGTCGTTGAGCCTCTGATTAG
*
4170081 AGGAGCCATGTATTTTCAAAAGTCGTTGAGCCTCTGATTAG
1 AGGAGCCATTTATTTTCAAAAGTCGTTGAGCCTCTGATTAG
4170122 CCTAGTCCAA
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
41 35 0.51
42 33 0.49
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (41 bp):
AGGAGCCATTTATTTTCAAAAGTCGTTGAGCCTCTGATTAG
Found at i:4170209 original size:16 final size:19
Alignment explanation
Indices: 4170170--4170225 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
4170160 TTTTATTTAT
*
4170170 TTATTTATTATTACTATTA
1 TTATTTATTAATACTATTA
4170189 TTATTTATTAATA-TATATA
1 TTATTTATTAATACTAT-TA
*
4170208 TTATTTATTTAT-CTATTA
1 TTATTTATTAATACTATTA
4170226 ACATATATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 5 0.15
19 28 0.85
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATTTATTAATACTATTA
Found at i:4170210 original size:31 final size:31
Alignment explanation
Indices: 4170161--4170258 Score: 78
Period size: 31 Copynumber: 3.2 Consensus size: 31
4170151 TTTTAAAATT
* * *
4170161 TTTATTTATTTATTTATTATTACTATTATTA
1 TTTATTAATATATATATTATTACTATTATTA
4170192 TTTATTAATATATATATTATT--TA-T-TTA
1 TTTATTAATATATATATTATTACTATTATTA
* * *
4170219 TCTATTAACATATATTATTATTTATCTATTAATA
1 TTTATTAATATATA-TATTA-TTA-CTATTATTA
*
4170253 TATATT
1 TTTATT
4170259 TTTTATTTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
27 15 0.28
28 6 0.11
29 4 0.08
31 18 0.34
32 2 0.04
33 1 0.02
34 7 0.13
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (31 bp):
TTTATTAATATATATATTATTACTATTATTA
Found at i:4171052 original size:21 final size:22
Alignment explanation
Indices: 4171019--4171063 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
4171009 TCGAGCCATC
*
4171019 TTTTTTATCTTGAGTCGAGCCG
1 TTTTTTATCTTGAGCCGAGCCG
*
4171041 TTTTTTA-GTTGAGCCGAGCCG
1 TTTTTTATCTTGAGCCGAGCCG
4171062 TT
1 TT
4171064 CCAAAGGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.13, C:0.18, G:0.24, T:0.44
Consensus pattern (22 bp):
TTTTTTATCTTGAGCCGAGCCG
Found at i:4171143 original size:10 final size:10
Alignment explanation
Indices: 4171130--4171154 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
4171120 TTATTTACTA
4171130 TTTTTTATTT
1 TTTTTTATTT
4171140 TTTTTTATTT
1 TTTTTTATTT
4171150 TTTTT
1 TTTTT
4171155 GGTTTTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:4171220 original size:58 final size:58
Alignment explanation
Indices: 4171157--4171394 Score: 245
Period size: 58 Copynumber: 4.1 Consensus size: 58
4171147 TTTTTTTTGG
*
4171157 TTTTCTTT-AAATAAAATTTCAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAA
1 TTTTCTTTGAAATAAATTTTCAAAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAA
* * * *
4171215 TTTTCTTTGAAAATAAGTTTTC-TAAAAAATATTTTCGAGGAAAAGTCGAAAGTATCAA
1 TTTTCTTTG-AAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA
* ** * * *
4171273 TTTTCTTTGAAA-ACATTTTTCTAAAAAAGGTTTTTTTTTAGGAAAAATTGAAAGTATCAA
1 TTTTCTTTGAAATA-AATTTTC-AAAAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAA
* *
4171333 TTTT-TCTCGAAATTAAAGTTTCAAAAAAAATA-TTTTG-GGAAAAAGTTGAAAGTATCAA
1 TTTTCT-TTGAAA-TAAATTTTCAAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAA
4171391 TTTT
1 TTTT
4171395 TCTTGTACAA
Statistics
Matches: 148, Mismatches: 22, Indels: 20
0.78 0.12 0.11
Matches are distributed among these distances:
56 1 0.01
57 11 0.07
58 70 0.47
59 11 0.07
60 49 0.33
61 5 0.03
62 1 0.01
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (58 bp):
TTTTCTTTGAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA
Found at i:4174021 original size:2 final size:2
Alignment explanation
Indices: 4174014--4174049 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4174004 GTATGTTACA
4174014 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4174050 GATTAAAGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4175435 original size:2 final size:2
Alignment explanation
Indices: 4175428--4175455 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4175418 TGTTGGACTA
4175428 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4175456 GTGTGTGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4176899 original size:17 final size:17
Alignment explanation
Indices: 4176873--4176905 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4176863 AGTGAATTAT
*
4176873 TTTATTAATAAAAATAA
1 TTTATAAATAAAAATAA
4176890 TTTATAAATAAAAATA
1 TTTATAAATAAAAATA
4176906 TTAGATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTTATAAATAAAAATAA
Found at i:4177157 original size:22 final size:22
Alignment explanation
Indices: 4177132--4177188 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
4177122 TTTTTGTTTT
*
4177132 ATATATATTTTTACTTTTTATG
1 ATATATATTTTTAATTTTTATG
*
4177154 ATAT-TCAATTTTTAATTTTTATT
1 ATATAT--ATTTTTAATTTTTATG
*
4177177 AGATATATTTTT
1 ATATATATTTTT
4177189 TGCAAATATT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 1 0.03
22 10 0.34
23 17 0.59
24 1 0.03
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (22 bp):
ATATATATTTTTAATTTTTATG
Found at i:4178183 original size:21 final size:21
Alignment explanation
Indices: 4178159--4178200 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
4178149 TATTAATAAC
4178159 CTTATTT-TTTGTATTTTTAAA
1 CTTATTTATTTG-ATTTTTAAA
4178180 CTTATTTATTTGATTTTTAAA
1 CTTATTTATTTGATTTTTAAA
4178201 AATATTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (21 bp):
CTTATTTATTTGATTTTTAAA
Found at i:4178206 original size:21 final size:21
Alignment explanation
Indices: 4178161--4178224 Score: 58
Period size: 21 Copynumber: 2.9 Consensus size: 21
4178151 TTAATAACCT
**
4178161 TATTT-TTTGTATTTTTAAACT
1 TATTTATTTG-ATTTTTAAAAA
4178182 TATTTATTTGATTTTTAAAAA
1 TATTTATTTGATTTTTAAAAA
*
4178203 TATTATATATTTATTTTATAAA
1 TATT-TAT-TTGATTTT-TAAA
4178225 TTATTAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 18 0.50
22 7 0.19
23 7 0.19
24 4 0.11
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (21 bp):
TATTTATTTGATTTTTAAAAA
Found at i:4178229 original size:23 final size:21
Alignment explanation
Indices: 4178170--4178230 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 21
4178160 TTATTTTTTG
4178170 TATTTTTAAACTTATT-TATTT
1 TATTTTTAAA-TTATTATATTT
* *
4178191 GATTTTTAAAAATATTATATATT
1 TATTTTT-AAATTATTATAT-TT
4178214 TATTTTATAAATTATTA
1 TATTTT-TAAATTATTA
4178231 ATAAGATTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
21 10 0.31
22 6 0.19
23 15 0.47
24 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TATTTTTAAATTATTATATTT
Found at i:4179202 original size:34 final size:34
Alignment explanation
Indices: 4179142--4179247 Score: 90
Period size: 33 Copynumber: 3.1 Consensus size: 34
4179132 AACTTAGCAG
***
4179142 CATTTTA-AAGTACAAACGTCGTTAAATTTAATGA
1 CATTTTATAA-TACAAACGTTACTAAATTTAATGA
** * * * *
4179176 TGTTTTCTTATACAAACGTTACTAAA-TTAGTGG
1 CATTTTATAATACAAACGTTACTAAATTTAATGA
**
4179209 CATTTTATAATACAAACGTTACTAAATTTAGCGA
1 CATTTTATAATACAAACGTTACTAAATTTAATGA
4179243 CATTT
1 CATTT
4179248 ATAGTTAAAA
Statistics
Matches: 55, Mismatches: 15, Indels: 4
0.74 0.20 0.05
Matches are distributed among these distances:
33 27 0.49
34 27 0.49
35 1 0.02
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (34 bp):
CATTTTATAATACAAACGTTACTAAATTTAATGA
Found at i:4179313 original size:74 final size:74
Alignment explanation
Indices: 4179199--4179372 Score: 174
Period size: 74 Copynumber: 2.3 Consensus size: 74
4179189 AAACGTTACT
* *
4179199 AAATTAGTGGCATTT-TATAATACAAACGTTACTAAATTTAGC-GACATTTATAG-TTAAAAATA
1 AAATTAGTGACATTTGTATAA-A-AAACGATACTAAATTTAGCAG-CATTTAT-GTTTAAAAATA
** * *
4179261 TCGTTAAATTATG
62 TCACTAAATGATA
** * *
4179274 AAATTAGTGACATTTGTATAAAAAACGATGTTAAATTTAGCAGCATTTGTGTTTAAAAATGTCAC
1 AAATTAGTGACATTTGTATAAAAAACGATACTAAATTTAGCAGCATTTATGTTTAAAAATATCAC
*
4179339 TAAATGCTA
66 TAAATGATA
*
4179348 AAAATAGTGACATTTGTAGTAAAAA
1 AAATTAGTGACATTTGTA-TAAAAA
4179373 TATCACTAAA
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
73 1 0.01
74 55 0.66
75 22 0.27
76 5 0.06
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.35
Consensus pattern (74 bp):
AAATTAGTGACATTTGTATAAAAAACGATACTAAATTTAGCAGCATTTATGTTTAAAAATATCAC
TAAATGATA
Found at i:4186091 original size:6 final size:7
Alignment explanation
Indices: 4186062--4186089 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
4186052 GAGAGTAGAG
4186062 TATTTTT
1 TATTTTT
4186069 TATTTTT
1 TATTTTT
4186076 TATTTTT
1 TATTTTT
4186083 TATTTTT
1 TATTTTT
4186090 ATATGATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TATTTTT
Found at i:4186862 original size:122 final size:123
Alignment explanation
Indices: 4186724--4186964 Score: 475
Period size: 123 Copynumber: 2.0 Consensus size: 123
4186714 TGGCATCACG
4186724 AATATTTTGCCATGCATGTATATATAAAAAGAGCTAATAGTACTTG-TTTATTAAAATTTAGATG
1 AATATTTTGCCATGCATGTATATATAAAAAGAGCTAATAGTACTTGTTTTATTAAAATTTAGATG
4186788 TTTTTCTCTTCAATATAACATGAAAAAATCAGTTAAAATGGTTTCATATCAACATATC
66 TTTTTCTCTTCAATATAACATGAAAAAATCAGTTAAAATGGTTTCATATCAACATATC
4186846 AATATTTTGCCATGCATGTATATATAAAAAGAGCTAATAGTACTTGTTTTATTAAAATTTAGATG
1 AATATTTTGCCATGCATGTATATATAAAAAGAGCTAATAGTACTTGTTTTATTAAAATTTAGATG
4186911 TTTTTCTCTTCAATATAACATGAAAAAATCAGTTAAAATGGTTTCATATCAACA
66 TTTTTCTCTTCAATATAACATGAAAAAATCAGTTAAAATGGTTTCATATCAACA
4186965 AATTACATAT
Statistics
Matches: 118, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
122 46 0.39
123 72 0.61
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (123 bp):
AATATTTTGCCATGCATGTATATATAAAAAGAGCTAATAGTACTTGTTTTATTAAAATTTAGATG
TTTTTCTCTTCAATATAACATGAAAAAATCAGTTAAAATGGTTTCATATCAACATATC
Found at i:4187573 original size:13 final size:13
Alignment explanation
Indices: 4187555--4187579 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4187545 TTAAATATAA
4187555 TTTAATAAAAAAT
1 TTTAATAAAAAAT
4187568 TTTAATAAAAAA
1 TTTAATAAAAAA
4187580 AATTTAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TTTAATAAAAAAT
Found at i:4187580 original size:14 final size:13
Alignment explanation
Indices: 4187553--4187586 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
4187543 TTTTAAATAT
4187553 AATTTAATAAAAA
1 AATTTAATAAAAA
*
4187566 ATTTTAATAAAAAA
1 AATTTAAT-AAAAA
4187580 AATTTAA
1 AATTTAA
4187587 ATAATAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
AATTTAATAAAAA
Found at i:4187581 original size:15 final size:15
Alignment explanation
Indices: 4187561--4187590 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
4187551 ATAATTTAAT
*
4187561 AAAAAATTTTAATAA
1 AAAAAATTTAAATAA
4187576 AAAAAATTTAAATAA
1 AAAAAATTTAAATAA
4187591 TAAATTAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAAATTTAAATAA
Found at i:4190781 original size:21 final size:20
Alignment explanation
Indices: 4190750--4190789 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
4190740 TTAATATAAT
4190750 AATAAATAAAAATT-TTATTA
1 AATAAAT-AAAATTATTATTA
4190770 AATAATATAAAATTATTATT
1 AATAA-ATAAAATTATTATT
4190790 TTTAGATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
AATAAATAAAATTATTATTA
Found at i:4191032 original size:24 final size:23
Alignment explanation
Indices: 4191000--4191048 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
4190990 ATATTTATTA
*
4191000 AATATAAATACAAAAATAAATAT
1 AATATAAATACAAAAATAAAAAT
**
4191023 AATATAAAATTTAAAAATAAAAAT
1 AATAT-AAATACAAAAATAAAAAT
4191047 AA
1 AA
4191049 AAAATATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (23 bp):
AATATAAATACAAAAATAAAAAT
Done.