Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 28 of 131
Found at i:6676678 original size:14 final size:14
Alignment explanation
Indices: 6676611--6676807 Score: 95
Period size: 14 Copynumber: 13.9 Consensus size: 14
6676601 ATTTTTGTGT
6676611 TTTA-TATT-TTTA
1 TTTATTATTATTTA
6676623 TTTATT-TTATTTTA
1 TTTATTATTA-TTTA
*
6676637 TTTTATTTTGTATCTTA
1 -TTTATTAT-TAT-TTA
*
6676654 TGTATTTATTATTTA
1 TTTA-TTATTATTTA
*
6676669 TTTATTATTA-CTA
1 TTTATTATTATTTA
* *
6676682 TTTATTAATATATA
1 TTTATTATTATTTA
*
6676696 TTTTTTATTATTTA
1 TTTATTATTATTTA
* * * *
6676710 TCTGTTAATATATA
1 TTTATTATTATTTA
*
6676724 TGTATTTATTA-TTA
1 TTTA-TTATTATTTA
*
6676738 TTTA-T-CTATTTA
1 TTTATTATTATTTA
*
6676750 TATATTATTATTTA
1 TTTATTATTATTTA
* *
6676764 TCTATTAATATTTTTA
1 TTTATT-AT-TATTTA
*
6676780 TTTATCTAATT-TTTT
1 TTTAT-T-ATTATTTA
6676795 TTTATTATCTATT
1 TTTATTAT-TATT
6676808 AACATTTTTT
Statistics
Matches: 142, Mismatches: 25, Indels: 33
0.71 0.12 0.17
Matches are distributed among these distances:
11 2 0.01
12 13 0.09
13 15 0.11
14 53 0.37
15 29 0.20
16 18 0.13
17 12 0.08
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (14 bp):
TTTATTATTATTTA
Found at i:6676736 original size:32 final size:31
Alignment explanation
Indices: 6676660--6676770 Score: 120
Period size: 32 Copynumber: 3.5 Consensus size: 31
6676650 CTTATGTATT
*
6676660 TATTATTTATTTATTATTACTATTTATTAATATA
1 TATTATTTA-TTATTATT--TATCTATTAATATA
*
6676694 TA-T-TTT-TTATTATTTATCTGTTAATATA
1 TATTATTTATTATTATTTATCTATTAATATA
*
6676722 TATGTATTTATTATTATTTATCTATTTATATA
1 TAT-TATTTATTATTATTTATCTATTAATATA
6676754 TTATTATTTATCTATTA
1 -TATTATTTAT-TATTA
6676771 ATATTTTTAT
Statistics
Matches: 67, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
28 14 0.21
30 9 0.13
31 3 0.04
32 30 0.45
33 9 0.13
34 2 0.03
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (31 bp):
TATTATTTATTATTATTTATCTATTAATATA
Found at i:6676793 original size:16 final size:16
Alignment explanation
Indices: 6676726--6676801 Score: 66
Period size: 16 Copynumber: 4.6 Consensus size: 16
6676716 AATATATATG
*
6676726 TATTTATTATTATTTAT
1 TATTTATTAATATTT-T
*
6676743 CTATTTATATATTATTATT
1 -TATTTAT-TAATATT-TT
*
6676762 TATCTATTAATATTTT
1 TATTTATTAATATTTT
6676778 TATTTATCTAAT-TTTT
1 TATTTAT-TAATATTTT
6676794 T-TTTATTA
1 TATTTATTA
6676802 TCTATTAACA
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
14 2 0.04
15 5 0.10
16 13 0.25
17 10 0.19
18 13 0.25
19 8 0.15
20 1 0.02
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTTATTAATATTTT
Found at i:6676803 original size:38 final size:42
Alignment explanation
Indices: 6676656--6676821 Score: 129
Period size: 40 Copynumber: 4.1 Consensus size: 42
6676646 GTATCTTATG
* * *
6676656 TATTTAT-TATTTATTTATTATTA-CTATTTATTAATATATATT
1 TATTTATCTATTTATATATTATTATTTATCTATTAATAT-T-TT
* * * * * *
6676698 T-TTTAT-TATTTATCTGTTAATATATATGTATT--TATTAT
1 TATTTATCTATTTATATATTATTATTTATCTATTAATATTTT
6676736 TATTTATCTATTTATATATTATTATTTATCTATTAATATTTT
1 TATTTATCTATTTATATATTATTATTTATCTATTAATATTTT
*
6676778 TATTTATCTAATTT-T-T-TT-TTA-TTATCTATTAACATTTTT
1 TATTTATCT-ATTTATATATTATTATTTATCTATTAATA-TTTT
6676817 TATTT
1 TATTT
6676822 GGTTTGATTT
Statistics
Matches: 104, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
38 14 0.13
39 18 0.17
40 26 0.25
41 19 0.18
42 23 0.22
43 4 0.04
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (42 bp):
TATTTATCTATTTATATATTATTATTTATCTATTAATATTTT
Found at i:6677629 original size:4 final size:4
Alignment explanation
Indices: 6677611--6677657 Score: 50
Period size: 4 Copynumber: 12.8 Consensus size: 4
6677601 TGTTCCCAAA
6677611 ATTT -TTT ATTTT ATTT ATTT ATTT ATTT A-TT A-TT A-TT A-TT ATTT
1 ATTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
6677655 ATT
1 ATT
6677658 GACTAAATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 15 0.38
4 21 0.52
5 4 0.10
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:6677711 original size:6 final size:6
Alignment explanation
Indices: 6677683--6677727 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
6677673 TATTTAGTAT
*
6677683 TTTTTA -TTTTA -TTTTA -TTCTA TTTTTA TTTTTA TTTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA TTTTT
6677728 TCTCTTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 14 0.40
6 15 0.43
7 6 0.17
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:6677728 original size:21 final size:21
Alignment explanation
Indices: 6677682--6677728 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
6677672 TTATTTAGTA
*
6677682 TTTTTTATTTTATTTTATTCT
1 TTTTTTATTTTATTTTATTAT
*
6677703 ATTTTTATTTTTATTTT-TTAT
1 TTTTTTA-TTTTATTTTATTAT
6677724 TTTTT
1 TTTTT
6677729 CTCTTTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTTATTTTATTTTATTAT
Found at i:6677816 original size:57 final size:59
Alignment explanation
Indices: 6677750--6677910 Score: 229
Period size: 57 Copynumber: 2.7 Consensus size: 59
6677740 AAATTCCAAC
6677750 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAGAA-TAAG-TCTTC-A
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAGTAAGTTCTTCTA
* * * *
6677807 AAAAATATTTTTAAGGAAAAGTTAAAAGTATCAATTTTCCTTGAAAGTTAGTTTTTTTCTA
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAGTAAG--TTCTTCTA
*
6677868 AAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
6677911 TACAAAAGCA
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
56 2 0.02
57 45 0.49
60 4 0.04
61 41 0.45
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.39
Consensus pattern (59 bp):
AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAGTAAGTTCTTCTA
Found at i:6688364 original size:11 final size:11
Alignment explanation
Indices: 6688347--6688404 Score: 56
Period size: 10 Copynumber: 5.7 Consensus size: 11
6688337 GCTTGAACAC
6688347 AAAAAAAGAGA
1 AAAAAAAGAGA
*
6688358 GAAAAAAA-TG-
1 -AAAAAAAGAGA
6688368 -AAAAAAGA-A
1 AAAAAAAGAGA
6688377 AAAAAAAGA-A
1 AAAAAAAGAGA
6688387 AAAAAAA-AGA
1 AAAAAAAGAGA
6688397 AAAAAAAG
1 AAAAAAAG
6688405 TGAATGAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
8 6 0.15
9 1 0.03
10 24 0.62
11 1 0.03
12 7 0.18
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (11 bp):
AAAAAAAGAGA
Found at i:6688372 original size:10 final size:10
Alignment explanation
Indices: 6688368--6688403 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
6688358 GAAAAAAATG
6688368 AAAAAAGAAA
1 AAAAAAGAAA
6688378 AAAAAAGAAAA
1 AAAAAAG-AAA
6688389 AAAAAAGAAA
1 AAAAAAGAAA
6688399 AAAAA
1 AAAAA
6688404 GTGAATGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:6688373 original size:8 final size:7
Alignment explanation
Indices: 6688360--6688401 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
6688350 AAAAGAGAGA
6688360 AAAAAATG
1 AAAAAA-G
6688368 AAAAAAG
1 AAAAAAG
6688375 AAAAAA-
1 AAAAAAG
*
6688381 AAAGAAAA
1 AAA-AAAG
6688389 AAAAAAG
1 AAAAAAG
6688396 AAAAAA
1 AAAAAA
6688402 AAGTGAATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
6 3 0.10
7 19 0.61
8 9 0.29
ACGTcount: A:0.88, C:0.00, G:0.10, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:6688390 original size:28 final size:28
Alignment explanation
Indices: 6688347--6688401 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
6688337 GCTTGAACAC
* * *
6688347 AAAAAAAGAGAGAAAAAAATGAAAAAAG
1 AAAAAAAAAGAAAAAAAAAAGAAAAAAG
6688375 AAAAAAAAAGAAAAAAAAAAGAAAAAA
1 AAAAAAAAAGAAAAAAAAAAGAAAAAA
6688402 AAGTGAATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (28 bp):
AAAAAAAAAGAAAAAAAAAAGAAAAAAG
Found at i:6688414 original size:21 final size:21
Alignment explanation
Indices: 6688359--6688416 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
6688349 AAAAAGAGAG
6688359 AAAA-AAATGAAAAAAGAAAAA
1 AAAAGAAATG-AAAAAGAAAAA
**
6688380 AAAAGAAAAAAAAAAG-AAAA
1 AAAAGAAATGAAAAAGAAAAA
*
6688400 AAAAGTGAATGAAAAAG
1 AAAAG-AAATGAAAAAG
6688417 GATGACTCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
20 9 0.30
21 18 0.60
22 3 0.10
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (21 bp):
AAAAGAAATGAAAAAGAAAAA
Found at i:6689561 original size:40 final size:42
Alignment explanation
Indices: 6689457--6689563 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
6689447 AGCAATTTAC
* * * *
6689457 TTTTCAAAAGTTGTTGAGCCTCTAATTAGAGGAGCTTTGTTTAT
1 TTTTC-AAAGTCGTTGAGCCTCTGATTAGAGGAGC-TCGCTTAT
*
6689501 TTTTTAAAGTCGTTGAGCCTCTGATTAGAGGAG-TCGCTTA-
1 TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTCGCTTAT
*
6689541 TTTTCAAAGTCGTTAAGCCTCTG
1 TTTTCAAAGTCGTTGAGCCTCTG
6689564 CTTATGAGAG
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
40 21 0.38
41 5 0.09
43 26 0.46
44 4 0.07
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.40
Consensus pattern (42 bp):
TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTCGCTTAT
Found at i:6689765 original size:5 final size:5
Alignment explanation
Indices: 6689755--6689804 Score: 54
Period size: 5 Copynumber: 10.8 Consensus size: 5
6689745 TGGGTAGGCC
* *
6689755 TATTT TA-TT T-TTG TATTT TA-TA TA-TT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT
6689801 TATT
1 TATT
6689805 GTATCTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
4 11 0.29
5 27 0.71
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (5 bp):
TATTT
Found at i:6689773 original size:13 final size:12
Alignment explanation
Indices: 6689755--6689801 Score: 53
Period size: 13 Copynumber: 3.9 Consensus size: 12
6689745 TGGGTAGGCC
6689755 TATTTTATTTTT
1 TATTTTATTTTT
*
6689767 GTATTTTATATATT
1 -TATTTTAT-TTTT
6689781 TATTTTA--TTT
1 TATTTTATTTTT
6689791 TATTTTATTTT
1 TATTTTATTTT
6689802 ATTGTATCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
10 9 0.31
12 2 0.07
13 15 0.52
14 3 0.10
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (12 bp):
TATTTTATTTTT
Found at i:6689813 original size:15 final size:14
Alignment explanation
Indices: 6689755--6689932 Score: 60
Period size: 14 Copynumber: 12.8 Consensus size: 14
6689745 TGGGTAGGCC
6689755 TATTTTATT-T-TT
1 TATTTTATTATATT
6689767 GTATTTTA-TATATT
1 -TATTTTATTATATT
*
6689781 TATTTTATTTTATTT
1 TATTTTATTATA-TT
*
6689796 TATTTTATTGTATCT
1 TATTTTATTATAT-T
*
6689811 TA-TATATT-TA-T
1 TATTTTATTATATT
6689822 TA-TTTATT-TATTGT
1 TATTTTATTATA-T-T
*
6689836 TACTATTTATTA-ATA
1 TA-T-TTTATTATATT
6689851 TATTTT-TTATTATT
1 TATTTTATTA-TATT
* *
6689865 TATCTATTAATATATG
1 TAT-T-TTATTATATT
6689881 TA-TTTATTATTATT
1 TATTTTATTA-TATT
* *
6689895 TA-TCTATT-TATA
1 TATTTTATTATATT
*
6689907 TATTATTATT-TATC
1 TATT-TTATTATATT
6689921 TATTATTATTAT
1 TATT-TTATTAT
6689933 TTATCTATTA
Statistics
Matches: 130, Mismatches: 14, Indels: 40
0.71 0.08 0.22
Matches are distributed among these distances:
11 10 0.08
12 9 0.07
13 26 0.20
14 48 0.37
15 20 0.15
16 8 0.06
17 9 0.07
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (14 bp):
TATTTTATTATATT
Found at i:6689825 original size:36 final size:34
Alignment explanation
Indices: 6689755--6689830 Score: 100
Period size: 38 Copynumber: 2.1 Consensus size: 34
6689745 TGGGTAGGCC
*
6689755 TATTTTATTTTTGTATTTTATATATTTATTTTATTT
1 TATTTTATTTTTGTATCTTATATATTTA-TTTA-TT
6689791 TATTTTATTTTATTGTATCTTATATATTTA-TTATT
1 TATTTTA-TTT-TTGTATCTTATATATTTATTTATT
6689826 TATTT
1 TATTT
6689831 ATTGTTACTA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
35 7 0.19
36 10 0.27
37 3 0.08
38 17 0.46
ACGTcount: A:0.24, C:0.01, G:0.03, T:0.72
Consensus pattern (34 bp):
TATTTTATTTTTGTATCTTATATATTTATTTATT
Found at i:6689828 original size:4 final size:4
Alignment explanation
Indices: 6689758--6689982 Score: 89
Period size: 4 Copynumber: 56.5 Consensus size: 4
6689748 GTAGGCCTAT
*
6689758 TTTA TTT- TTGTA TTTTA TATA TTTA TTTTA TTTTA TTTTA TTTTA TTGTA
1 TTTA TTTA TT-TA -TTTA TTTA TTTA -TTTA -TTTA -TTTA -TTTA TT-TA
* * * *
6689808 TCTTA TATA TTTA -TTA TTTA TTTA TTGT- TACTA TTTA TTAA TATA TTT-
1 T-TTA TTTA TTTA TTTA TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA
* * * * *
6689856 TTTA -TTA TTTA TCTA TTAA TATA TGTA TTTA -TTA -TTA TTTA TCTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * *
6689901 TTTA TATA -TTA -TTA TTTA TCTA -TTA -TTA -TTA TTTA TCTA TTAA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * *
6689944 TATT- TTTA TTTA TCTA ATTA TTTTT TTTA ATTA TTTA TT
1 T-TTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TT
6689983 AACATTTTTT
Statistics
Matches: 168, Mismatches: 35, Indels: 36
0.70 0.15 0.15
Matches are distributed among these distances:
3 32 0.19
4 101 0.60
5 32 0.19
6 3 0.02
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:6689830 original size:30 final size:30
Alignment explanation
Indices: 6689786--6689959 Score: 102
Period size: 30 Copynumber: 5.9 Consensus size: 30
6689776 ATATTTATTT
6689786 TATTT-TAT-TTTATT-TTATTGTATCTTATA
1 TATTTATATATTTATTATTATT-TATC-TATA
* *
6689815 TATTTAT-TATTTATTTATT-GTTA-CTATT
1 TATTTATATATTTA-TTATTATTTATCTATA
* *
6689843 TATTAATATATTTTTTATTATTTATCTAT-
1 TATTTATATATTTATTATTATTTATCTATA
* *
6689872 TAATATATGTATTTATTATTATTTATCTATTTA
1 T-ATTTATATATTTATTATTATTTATCTA--TA
*
6689905 TATATTAT-TATTTATCTATTA-TTAT-TATT
1 TAT-TTATATATTTAT-TATTATTTATCTATA
* * *
6689934 TATCTAT-TA-ATATTTTTATTTATCTA
1 TATTTATATATTTATTATTATTTATCTA
6689960 ATTATTTTTT
Statistics
Matches: 116, Mismatches: 14, Indels: 31
0.72 0.09 0.19
Matches are distributed among these distances:
26 4 0.03
27 7 0.06
28 21 0.18
29 20 0.17
30 34 0.29
31 5 0.04
32 16 0.14
33 9 0.08
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (30 bp):
TATTTATATATTTATTATTATTTATCTATA
Found at i:6689941 original size:14 final size:14
Alignment explanation
Indices: 6689857--6689948 Score: 84
Period size: 14 Copynumber: 6.6 Consensus size: 14
6689847 AATATATTTT
6689857 TTATTATTTATCTA
1 TTATTATTTATCTA
* *
6689871 TTAATATATGTATTTA
1 TT-AT-TATTTATCTA
6689887 TTATTATTTATCTA
1 TTATTATTTATCTA
*
6689901 -T-TTATATAT-TA
1 TTATTATTTATCTA
*
6689912 TTATTTATCTAT-TA
1 TTA-TTATTTATCTA
6689926 TTATTATTTATCTA
1 TTATTATTTATCTA
*
6689940 TTAATATTT
1 TTATTATTT
6689949 TTATTTATCT
Statistics
Matches: 64, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
11 2 0.03
12 8 0.12
13 8 0.12
14 32 0.50
15 4 0.06
16 10 0.16
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (14 bp):
TTATTATTTATCTA
Found at i:6689961 original size:17 final size:17
Alignment explanation
Indices: 6689857--6689961 Score: 77
Period size: 17 Copynumber: 5.9 Consensus size: 17
6689847 AATATATTTT
*
6689857 TTATTATTTATCTATTA
1 TTATTATTTATCTAATA
* * * *
6689874 ATA-TATGTATTTATTA
1 TTATTATTTATCTAATA
* *
6689890 TTATTTATCTATTTATATA
1 TTA-TTATTTATCTA-ATA
*
6689909 TTATTATTTATCTATTA
1 TTATTATTTATCTAATA
6689926 TTATTATTTATCTATTAATA
1 TTATTATTTATC---TAATA
*
6689946 TTTTTATTTATCTAAT
1 TTATTATTTATCTAAT
6689962 TATTTTTTTT
Statistics
Matches: 71, Mismatches: 11, Indels: 12
0.76 0.12 0.13
Matches are distributed among these distances:
16 13 0.18
17 20 0.28
18 18 0.25
19 5 0.07
20 15 0.21
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (17 bp):
TTATTATTTATCTAATA
Found at i:6689967 original size:17 final size:19
Alignment explanation
Indices: 6689795--6689965 Score: 100
Period size: 20 Copynumber: 9.3 Consensus size: 19
6689785 TTATTTTATT
6689795 TTATT-TTATTGTATCT-TA
1 TTATTATTATT-TATCTATA
6689813 TATATTTATTATTTAT-T-TA
1 T-TA-TTATTATTTATCTATA
* *
6689832 TTGTTACTATTTAT-TA-A
1 TTATTATTATTTATCTATA
*
6689849 -TA-TATTTTTTAT-TAT-
1 TTATTATTATTTATCTATA
* *
6689864 TTATCTATTAATATATGTAT-
1 TTAT-TATT-ATTTATCTATA
6689884 TTATTATTATTTATCTATTTA
1 TTATTATTATTTATCTA--TA
6689905 TATATTATTATTTATC--TA
1 T-TATTATTATTTATCTATA
6689923 TTATTATTATTTATCTATTA
1 TTATTATTATTTATCTA-TA
* *
6689943 ATATTTTTATTTATCTA-A
1 TTATTATTATTTATCTATA
6689961 TTATT
1 TTATT
6689966 TTTTTTAATT
Statistics
Matches: 124, Mismatches: 12, Indels: 34
0.73 0.07 0.20
Matches are distributed among these distances:
15 10 0.08
16 3 0.02
17 26 0.21
18 21 0.17
19 14 0.11
20 30 0.24
21 6 0.05
22 14 0.11
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (19 bp):
TTATTATTATTTATCTATA
Found at i:6690876 original size:6 final size:6
Alignment explanation
Indices: 6690865--6690922 Score: 70
Period size: 6 Copynumber: 10.2 Consensus size: 6
6690855 AATTATTTAG
*
6690865 TATTTT TA-TTT TA-TTT TA-TTC TATTTT TATTTT TATTTT TA-TTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
6690909 TATTTTT TATTTT T
1 TA-TTTT TATTTT T
6690923 TCTCTTTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
5 19 0.40
6 23 0.49
7 5 0.11
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:6690883 original size:23 final size:22
Alignment explanation
Indices: 6690865--6690921 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 22
6690855 AATTATTTAG
*
6690865 TATTTTTATTTTA-TTTTATTC
1 TATTTTTATTTTATTTTTATTT
6690886 TATTTTTATTTTTATTTTTATTT
1 TATTTTTA-TTTTATTTTTATTT
6690909 TATTTTTTATTTT
1 TA-TTTTTATTTT
6690922 TTCTCTTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 8 0.25
22 5 0.16
23 13 0.41
24 6 0.19
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.81
Consensus pattern (22 bp):
TATTTTTATTTTATTTTTATTT
Found at i:6690890 original size:28 final size:28
Alignment explanation
Indices: 6690858--6690912 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
6690848 AATTTAGAAT
6690858 TATTTAGTATTTTTA-TTTTATTTTATTC
1 TATTT-GTATTTTTATTTTTATTTTATTC
*
6690886 TATTTTTATTTTTATTTTTATTTTATT
1 TATTTGTATTTTTATTTTTATTTTATT
6690913 TTTTATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 8 0.32
28 17 0.68
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (28 bp):
TATTTGTATTTTTATTTTTATTTTATTC
Found at i:6690900 original size:17 final size:17
Alignment explanation
Indices: 6690865--6690920 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
6690855 AATTATTTAG
*
6690865 TATTTTTATTTTA-TTT
1 TATTTATATTTTATTTT
6690881 TATTCTAT-TTTTATTTT
1 TATT-TATATTTTATTTT
*
6690898 TATTTTTATTTTATTTTT
1 TATTTATATTTTA-TTTT
6690916 TATTT
1 TATTT
6690921 TTTCTCTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 11 0.32
17 14 0.41
18 9 0.26
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (17 bp):
TATTTATATTTTATTTT
Found at i:6690921 original size:5 final size:5
Alignment explanation
Indices: 6690868--6690914 Score: 58
Period size: 5 Copynumber: 8.8 Consensus size: 5
6690858 TATTTAGTAT
*
6690868 TTTTA TTTTA TTTTA TTCTA TTTTTA TTTTTA TTTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA -TTTTA TTTTA TTTT
6690915 TTATTTTTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
5 23 0.59
6 16 0.41
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:6691014 original size:17 final size:17
Alignment explanation
Indices: 6690977--6691027 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
6690967 TGAAAGTATC
* * *
6690977 AATTTTCCTTGAAAGTC
1 AATTTTCCTTAAAAATA
6690994 AATTTTCCTTAAAAATA
1 AATTTTCCTTAAAAATA
* *
6691011 AATTTTTCTAAAAAATA
1 AATTTTCCTTAAAAATA
6691028 TTTTAGAAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.43, C:0.12, G:0.04, T:0.41
Consensus pattern (17 bp):
AATTTTCCTTAAAAATA
Found at i:6691074 original size:76 final size:74
Alignment explanation
Indices: 6690930--6691082 Score: 191
Period size: 76 Copynumber: 2.0 Consensus size: 74
6690920 TTTTCTCTTT
* * * *
6690930 AAATAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAGTCA
1 AAATAAAATTTCAAAAAATATATTTTAGAAGAAAAGTTGAAAGTATCAATTTTCCTCGAAAGTAA
6690995 ATTTTCCTTAA
66 ATTTT--TTAA
* * * * *
6691006 AAATAAATTTTTCTAAAAA-ATATTTTAGAAGAAAAGTTGAAAGTATTAATTTTTCTCGAAATTA
1 AAATAAA-ATTTCAAAAAATATATTTTAGAAGAAAAGTTGAAAGTATCAATTTTCCTCGAAAGTA
6691070 AATTTTTTAA
65 AATTTTTTAA
6691080 AAA
1 AAA
6691083 GTTGAAAGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
74 7 0.10
76 51 0.76
77 9 0.13
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.39
Consensus pattern (74 bp):
AAATAAAATTTCAAAAAATATATTTTAGAAGAAAAGTTGAAAGTATCAATTTTCCTCGAAAGTAA
ATTTTTTAA
Found at i:6691124 original size:42 final size:42
Alignment explanation
Indices: 6691037--6691124 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
6691027 ATTTTAGAAG
* * * * *
6691037 AAAAGTTGAAAGTATTAATTTTTCTCGAAATTAAATTTTTTA
1 AAAAGTTGAAAGTATTAATTTTCCTCAAAAATAAATTTCTAA
* *
6691079 AAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAGTTTCTAA
1 AAAAGTTGAAAGTATTAATTTTCCTCAAAAATAAATTTCTAA
6691121 AAAA
1 AAAA
6691125 TATTTTGGGG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (42 bp):
AAAAGTTGAAAGTATTAATTTTCCTCAAAAATAAATTTCTAA
Found at i:6692846 original size:19 final size:19
Alignment explanation
Indices: 6692824--6692861 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
6692814 TTGAAATTAA
*
6692824 AAAAATTAATTTAA-ATAAT
1 AAAAA-TAATATAATATAAT
6692843 AAAAATAATATAATATAAT
1 AAAAATAATATAATATAAT
6692862 TTGATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAATAATATAATATAAT
Found at i:6692893 original size:14 final size:14
Alignment explanation
Indices: 6692829--6692893 Score: 51
Period size: 15 Copynumber: 4.6 Consensus size: 14
6692819 ATTAAAAAAA
6692829 TTAATTTAAATAA-
1 TTAATTTAAATAAT
* **
6692842 TAAAAATAATATAAT
1 TTAATTTAA-ATAAT
* * *
6692857 ATAATTTGATTAAT
1 TTAATTTAAATAAT
6692871 TTAATTTTAAATAAT
1 TTAA-TTTAAATAAT
6692886 TTAATTTA
1 TTAATTTA
6692894 CAATTAATTG
Statistics
Matches: 37, Mismatches: 12, Indels: 5
0.69 0.22 0.09
Matches are distributed among these distances:
13 6 0.16
14 15 0.41
15 16 0.43
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (14 bp):
TTAATTTAAATAAT
Found at i:6693133 original size:2 final size:2
Alignment explanation
Indices: 6693126--6693174 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
6693116 CTTAGCGTGA
6693126 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6693168 AT AT AT A
1 AT AT AT A
6693175 CGAAATATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6693398 original size:148 final size:150
Alignment explanation
Indices: 6693173--6693453 Score: 381
Period size: 148 Copynumber: 1.9 Consensus size: 150
6693163 TATATATATA
* * * * *
6693173 TACGAAATATAAAATTAAAAAATTTTACATATTTTTTTAATTGTTGATTTTAATAGGTTCAAAAA
1 TACGAAATATAAAATTAAAAAATTTTACAAATTTTCTAAATTATTGATTTTAATAGATTCAAAAA
* *
6693238 ATAAAAAGATAAAT-AAAA-AAATAAATGATTAAAATAATATATAAA-ACTTTTTAAATTTTATA
66 ATAAAAAGATAAATAAAAATAAAAAAATGATTAAAACAATATATAAATACTTTTTAAATTTTATA
6693300 ATATATATAATGAATCAACT
131 ATATATATAATGAATCAACT
* *
6693320 TACGTAATATAAAATTAAAAAGCTTTTACAAATTTTCTAAATTATTGATTTTAATAGATTCAAAA
1 TACGAAATATAAAATTAAAAA-ATTTTACAAATTTTCTAAATTATTGATTTTAATAGATTCAAAA
* * ** *
6693385 AATAGAGAA-ATAAATAAAAATTAAAAAAATTATTAAAACAATATATAAATTTTTTTTTAATTTT
65 AATA-AAAAGATAAATAAAAA-TAAAAAAATGATTAAAACAATATATAAATACTTTTTAAATTTT
6693449 ATAAT
128 ATAAT
6693454 GTAAATTAGT
Statistics
Matches: 114, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
147 20 0.18
148 47 0.41
149 7 0.06
151 24 0.21
152 16 0.14
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (150 bp):
TACGAAATATAAAATTAAAAAATTTTACAAATTTTCTAAATTATTGATTTTAATAGATTCAAAAA
ATAAAAAGATAAATAAAAATAAAAAAATGATTAAAACAATATATAAATACTTTTTAAATTTTATA
ATATATATAATGAATCAACT
Found at i:6693658 original size:42 final size:42
Alignment explanation
Indices: 6693598--6693680 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
6693588 ATATTCATTT
* *
6693598 TAAGTTGTTAAGTCATTCAACTTTAATTATCTCTCTTTTATA
1 TAAGTTGTCAAGTCATTCAACTTTAATTATCTATCTTTTATA
*
6693640 TAAGTTGTCAAGTTATTCAACTTTAATTATCTATCTTTTAT
1 TAAGTTGTCAAGTCATTCAACTTTAATTATCTATCTTTTAT
6693681 GTCTTTCATC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.29, C:0.13, G:0.07, T:0.51
Consensus pattern (42 bp):
TAAGTTGTCAAGTCATTCAACTTTAATTATCTATCTTTTATA
Found at i:6697108 original size:13 final size:14
Alignment explanation
Indices: 6697090--6697119 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
6697080 ATTGGAATTT
6697090 TATATTTT-TAAAA
1 TATATTTTATAAAA
6697103 TATATTTTATAAAA
1 TATATTTTATAAAA
6697117 TAT
1 TAT
6697120 TATAATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATATTTTATAAAA
Found at i:6705546 original size:26 final size:25
Alignment explanation
Indices: 6705515--6705567 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 25
6705505 ATTATAATAT
*
6705515 TTATTGTAATTATAATTTTAAAAAAA
1 TTATTGTAATTATAA-TTAAAAAAAA
6705541 TTATTGTAATTATAATTAAAAAAAA
1 TTATTGTAATTATAATTAAAAAAAA
6705566 TT
1 TT
6705568 TAACAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (25 bp):
TTATTGTAATTATAATTAAAAAAAA
Found at i:6706090 original size:2 final size:2
Alignment explanation
Indices: 6706083--6706108 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6706073 GGTCATTTGC
6706083 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6706109 GATTATATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6709818 original size:15 final size:13
Alignment explanation
Indices: 6709781--6709823 Score: 54
Period size: 12 Copynumber: 3.3 Consensus size: 13
6709771 TAATTTAAAT
6709781 TTTTTATTAAAAA
1 TTTTTATTAAAAA
6709794 -TTTTATTAAATAA
1 TTTTTATTAAA-AA
6709807 TTTTTAATT-AAAA
1 TTTTT-ATTAAAAA
6709820 TTTT
1 TTTT
6709824 CACGAATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 10 0.37
13 8 0.30
14 6 0.22
15 3 0.11
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTTTATTAAAAA
Found at i:6712097 original size:24 final size:22
Alignment explanation
Indices: 6712070--6712114 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
6712060 TTTGAGGGAT
*
6712070 TTTTGTGGCTGGAGGAGAAGGGTC
1 TTTTGTGACTGGA--AGAAGGGTC
*
6712094 TTTTTTGACTGGAAGAAGGGT
1 TTTTGTGACTGGAAGAAGGGT
6712115 AGGGACCGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
24 11 0.58
ACGTcount: A:0.20, C:0.07, G:0.40, T:0.33
Consensus pattern (22 bp):
TTTTGTGACTGGAAGAAGGGTC
Found at i:6715474 original size:6 final size:7
Alignment explanation
Indices: 6715458--6715484 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
6715448 CCACCGCTGG
6715458 TTTTTAT
1 TTTTTAT
6715465 TTTTTAT
1 TTTTTAT
6715472 TTTTTAT
1 TTTTTAT
6715479 TTTTTA
1 TTTTTA
6715485 AATTTGGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:6715577 original size:6 final size:6
Alignment explanation
Indices: 6715566--6715597 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
6715556 ACCTTTGAGA
6715566 AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AG
1 AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AG
6715598 TTATTTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (6 bp):
AGGGAG
Found at i:6720633 original size:98 final size:98
Alignment explanation
Indices: 6720464--6720757 Score: 563
Period size: 98 Copynumber: 3.0 Consensus size: 98
6720454 ACTTATTTAG
6720464 GAATGTCTATATTTTAGGTTTTGTAAAGTTATAAACCAGATGTAAGCAAGCAAGAGTGGTGAATG
1 GAATGTCTATATTTTAGGTTTTGTAAAGTTATAAACCAGATGTAAGCAAGCAAGAGTGGTGAATG
6720529 TGGAAGGGTTATTAAAAGATAGAGAACAAGTTA
66 TGGAAGGGTTATTAAAAGATAGAGAACAAGTTA
6720562 GAATGTCTATATTTTAGGTTTTGTAAAGTTATAAACCAGATGTAAGCAAGCAAGAGTGGTGAATG
1 GAATGTCTATATTTTAGGTTTTGTAAAGTTATAAACCAGATGTAAGCAAGCAAGAGTGGTGAATG
6720627 TGGAAGGGTTATTAAAAGATAGAGAACAAGTTA
66 TGGAAGGGTTATTAAAAGATAGAGAACAAGTTA
*
6720660 GAATGTCTATATTTTAGGTTTTGTAAAGTTATAAACCAGATGTAAGC-AGACTAGAGTGGTGAAT
1 GAATGTCTATATTTTAGGTTTTGTAAAGTTATAAACCAGATGTAAGCAAG-CAAGAGTGGTGAAT
6720724 GTGGAAGGGTTATTAAAAGATAGAGAACAAGTTA
65 GTGGAAGGGTTATTAAAAGATAGAGAACAAGTTA
6720758 ATAAGTTGAT
Statistics
Matches: 194, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
97 2 0.01
98 192 0.99
ACGTcount: A:0.38, C:0.06, G:0.26, T:0.30
Consensus pattern (98 bp):
GAATGTCTATATTTTAGGTTTTGTAAAGTTATAAACCAGATGTAAGCAAGCAAGAGTGGTGAATG
TGGAAGGGTTATTAAAAGATAGAGAACAAGTTA
Found at i:6721704 original size:36 final size:36
Alignment explanation
Indices: 6721657--6721728 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
6721647 ATTGAGTTGT
6721657 GATATCCAACTACATGATGCCTTATTCTCTAAAACC
1 GATATCCAACTACATGATGCCTTATTCTCTAAAACC
6721693 GATATCCAACTACATGATGCCTTATTCTCTAAAACC
1 GATATCCAACTACATGATGCCTTATTCTCTAAAACC
6721729 CTAATCAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (36 bp):
GATATCCAACTACATGATGCCTTATTCTCTAAAACC
Found at i:6730777 original size:1 final size:1
Alignment explanation
Indices: 6730771--6730795 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
6730761 ATGTGGAGGG
6730771 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
6730796 ACCAAAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:6732934 original size:218 final size:215
Alignment explanation
Indices: 6732680--6733177 Score: 511
Period size: 215 Copynumber: 2.3 Consensus size: 215
6732670 AAAACCAAAT
* * ** * ** *
6732680 AATAATTCTAAACTAATAAATAACTATTAATGTAAAAAGGTGAAAATAATCATAAAATTGGTGTT
1 AATAATTTTAAACTAAAAAATAAAAATTAATGTAAAAAAGTGAAAATAATCATAAAATTAATATT
* * * * * *
6732745 ATTTAACATAAAATAAGTTAGAAGTGTCGTAATACTTTAATAAAGA-ATTGTGAT-GTTAATAAA
66 ATTTAACATAAAAT-AGTTACAAGTATCATAACACCTTAATAAA-ACATTGTGATAATT-ATAAA
* ** *
6732808 CATTATGAAAAGTAATAACAAGTATAAAAAAATATTATTGTAACAAAAATAATTAAGA-TGGTAA
128 CATAATGAAAAGTAATAACAAGTATAAAAAAA-A-TATTAAAACAAAAATAATTAA-ACTAGTAA
6732872 TATAAAAAAATATTATTACAAATAAA
190 TATAAAAAAATATTATTACAAATAAA
* * **
6732898 AATAATTTTAAAC-AAAGAATAAAAAATTAATGTAAAAAAGTGAGAATAATTGTAAAATTAATAT
1 AATAATTTTAAACTAAAAAAT-AAAAATTAATGTAAAAAAGTGAAAATAATCATAAAATTAATAT
* * * * * * *
6732962 TATTTAACGTAAAATGGTTACACGTATCATTACACCTTAATAAAACATTTTGATAATTTTAAACG
65 TATTTAACATAAAATAGTTACAAGTATCATAACACCTTAATAAAACATTGTGATAATTATAAACA
* * *** * *
6733027 TAATGAAAAGTAATAATAAGTGTAAAAAAAATATTAAAATGTAAATAGTTAAACTAGTAATGTAA
130 TAATGAAAAGTAATAACAAGTATAAAAAAAATATTAAAACAAAAATAATTAAACTAGTAATATAA
*
6733092 AAAAATATTATTATAAATAAA
195 AAAAATATTATTACAAATAAA
* * ** *
6733113 AATAATTTTATACTAAAAAATAGATGTTAATGTAAAAAAAT-AAGAATAATCATAAAATTAATAT
1 AATAATTTTAAACTAAAAAATAAAAATTAATGTAAAAAAGTGAA-AATAATCATAAAATTAATAT
6733177 T
65 T
6733178 TTTTTGGTGT
Statistics
Matches: 228, Mismatches: 46, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
214 2 0.01
215 91 0.40
216 8 0.04
217 65 0.29
218 62 0.27
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.32
Consensus pattern (215 bp):
AATAATTTTAAACTAAAAAATAAAAATTAATGTAAAAAAGTGAAAATAATCATAAAATTAATATT
ATTTAACATAAAATAGTTACAAGTATCATAACACCTTAATAAAACATTGTGATAATTATAAACAT
AATGAAAAGTAATAACAAGTATAAAAAAAATATTAAAACAAAAATAATTAAACTAGTAATATAAA
AAAATATTATTACAAATAAA
Found at i:6733146 original size:215 final size:217
Alignment explanation
Indices: 6732854--6733389 Score: 550
Period size: 215 Copynumber: 2.5 Consensus size: 217
6732844 ATTGTAACAA
* * * *
6732854 AAATAATTAAGATGGTAATATAAAAAAATATTATTACAAATAAAAATAATTTTAAACAAAGAATA
1 AAATAATTAA-CTAGTAATATAAAAAAATATTATTATAAATAAAAATAATTTTAAACAAAAAAT-
* ** * * *
6732919 AAAAATTAATGTAAAAAAGTGAGAATAATTGTAAAATTAATA-TTATTTAACGTAAAATGGTTAC
64 AGATGTTAATGTAAAAAAGTGAGAATAATTATAAAATTAATATTTATTTAACGTAAAATGATTAA
* * * * * *
6732983 ACGTATCATTACACC-TTAATAAAACATTTTGATAATTTTAAACGTAATGAAAAGTAATAAT-AA
129 AAGTATCATAACACCTTTAAGAAAAAATTATGATAATCTTAAACGTAATGAAAAGTAATAATAAA
*
6733046 GTGTAAAAA-A-AATATTAAAATGT
194 CT-TAAAAAGATAATATTAAAATGT
* * *
6733069 AAATAGTTAAACTAGTAATGTAAAAAAATATTATTATAAATAAAAATAATTTTATACTAAAAAAT
1 AAATAATT-AACTAGTAATATAAAAAAATATTATTATAAATAAAAATAATTTTAAAC-AAAAAAT
* * * * ***
6733134 AGATGTTAATGTAAAAAAATAAGAATAATCATAAAATTAATATTTTTTTGGTGTAAAATGATTAA
64 AGATGTTAATGTAAAAAAGTGAGAATAATTATAAAATTAATATTTATTTAACGTAAAATGATTAA
* ** * *
6733199 AAGTGTTGTAACACCTTTAAGAAAAAATTATGATAATCTTAAATGTAATGAAAGGTAATAATAAA
129 AAGTATCATAACACCTTTAAGAAAAAATTATGATAATCTTAAACGTAATGAAAAGTAATAATAAA
* *
6733264 CTTAAAAAGATATTATTATAATGT
194 CTTAAAAAGATAATATTAAAATGT
* * * * * * *
6733288 AAATAATTAAGTTGACAACATAAAATAATTTATTATTATAAATAAAAATAATTCTAAACACAAAA
1 AAATAATTAACTAG-TAATATAAAA-AA-ATATTATTATAAATAAAAATAATTTTAAACAAAAAA
6733353 -AG-TGTTAATGT-AAAAAGATGA-AAGTAATTATAAAATT
63 TAGATGTTAATGTAAAAAAG-TGAGAA-TAATTATAAAATT
6733390 GGAATCCTTT
Statistics
Matches: 262, Mismatches: 47, Indels: 21
0.79 0.14 0.06
Matches are distributed among these distances:
215 83 0.32
216 34 0.13
217 53 0.20
218 31 0.12
219 27 0.10
220 7 0.03
221 27 0.10
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.33
Consensus pattern (217 bp):
AAATAATTAACTAGTAATATAAAAAAATATTATTATAAATAAAAATAATTTTAAACAAAAAATAG
ATGTTAATGTAAAAAAGTGAGAATAATTATAAAATTAATATTTATTTAACGTAAAATGATTAAAA
GTATCATAACACCTTTAAGAAAAAATTATGATAATCTTAAACGTAATGAAAAGTAATAATAAACT
TAAAAAGATAATATTAAAATGT
Found at i:6738331 original size:18 final size:18
Alignment explanation
Indices: 6738308--6738343 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
6738298 TCAAGACTAA
6738308 AAGTCAAGTTTTGTACTG
1 AAGTCAAGTTTTGTACTG
6738326 AAGTCAAGTTTTGTACTG
1 AAGTCAAGTTTTGTACTG
6738344 TATTCTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (18 bp):
AAGTCAAGTTTTGTACTG
Found at i:6739659 original size:20 final size:20
Alignment explanation
Indices: 6739631--6740031 Score: 185
Period size: 20 Copynumber: 19.9 Consensus size: 20
6739621 CGCCAAAATG
* *
6739631 AAACCCTTAAACCCCAAACC
1 AAACTCTTAAACCCTAAACC
*
6739651 AAACTCTTAAAACCTAAACC
1 AAACTCTTAAACCCTAAACC
* * *
6739671 AAACTTTTAGACCCTAAATC
1 AAACTCTTAAACCCTAAACC
*
6739691 AAAATCTTTAAACCCTAAACC
1 AAACTC-TTAAACCCTAAACC
6739712 AAA-TCCTTAAACCAC-AAACC
1 AAACT-CTTAAACC-CTAAACC
* *
6739732 AAAC-CTTAAACCCCCAAATC
1 AAACTCTTAAA-CCCTAAACC
* * ** *
6739752 AAACCCTTATACATTAAATCA
1 AAACTCTTAAACCCTAAA-CC
*
6739773 AAAC-CTTCATACTCC-AAACC
1 AAACTCTT-AAAC-CCTAAACC
6739793 AAACTCTTAAACCCTAAACC
1 AAACTCTTAAACCCTAAACC
* *
6739813 AAACCCTTAGA-CCTCAAACC
1 AAACTCTTAAACCCT-AAACC
6739833 AAGA-TCCTTAAACCC-AAACC
1 AA-ACT-CTTAAACCCTAAACC
*
6739853 AAAC-CTTTAAATCCTAAACC
1 AAACTC-TTAAACCCTAAACC
* *
6739873 AAA-TCCTTAAATCCTAAATCA
1 AAACT-CTTAAACCCTAAA-CC
* *
6739894 AAACCCTTAAACCC-AAATC
1 AAACTCTTAAACCCTAAACC
* *
6739913 GAAC-CTTTAAACCTTTAAACCC
1 AAACTC-TTAAACC-CTAAA-CC
* *
6739935 CAA-TCCATCCAAACCCTAAACC
1 AAACT-C-T-TAAACCCTAAACC
*
6739957 AAA-TCTTCAAA-TC-AAACC
1 AAACTCTT-AAACCCTAAACC
* *
6739975 TAAACTCTAAAACCCCAAACC
1 -AAACTCTTAAACCCTAAACC
*
6739996 AAAC-CTTAAA-TC-AAACC
1 AAACTCTTAAACCCTAAACC
*
6740013 TAAACTTTTAAA-CCTAAAC
1 -AAACTCTTAAACCCTAAAC
6740032 TAACCCAAAC
Statistics
Matches: 295, Mismatches: 48, Indels: 76
0.70 0.11 0.18
Matches are distributed among these distances:
17 5 0.02
18 12 0.04
19 48 0.16
20 145 0.49
21 64 0.22
22 10 0.03
23 6 0.02
24 5 0.02
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.20
Consensus pattern (20 bp):
AAACTCTTAAACCCTAAACC
Found at i:6739755 original size:81 final size:79
Alignment explanation
Indices: 6739635--6740005 Score: 240
Period size: 81 Copynumber: 4.6 Consensus size: 79
6739625 AAAATGAAAC
* * * * *
6739635 CCTTAAACCCCAAACCAAACTCTTAAAACCTAAACCAAACTTTTAGACCCTAAATCAAAATCTTT
1 CCTTAAA-CCCAAACCAAAC-CTTAAACCCCAAACCAAACTCTTAAACCCTAAATCAAAACCTTT
6739700 AAACCCTAAACCAAAT
64 AAACCCTAAACCAAAT
* * * ** *
6739716 CCTTAAACCACAAACCAAACCTTAAACCCCCAAATCAAACCCTTATACATTAAATCAAAACCTTC
1 CCTTAAACC-CAAACCAAACCTTAAA-CCCCAAACCAAACTCTTAAACCCTAAATCAAAACCTTT
*
6739781 ATACTCC-AAACCAAA-
64 AAAC-CCTAAACCAAAT
* * *
6739796 CTCTTAAACCCTAAACCAAACCCTTAGACCTCAAACCAAGA-TCCTTAAACCC-AAA-CCAAACC
1 C-CTTAAACCC-AAACCAAA-CCTTAAACCCCAAACCAA-ACT-CTTAAACCCTAAATCAAAACC
*
6739858 TTTAAATCCTAAACCAAAT
61 TTTAAACCCTAAACCAAAT
* * * * * * * *
6739877 CCTTAAATCCTAAATCAAAACCCTTAAA-CCCAAATCGAAC-CTTTAAACCTTTAAACCCCAATC
1 CCTTAAA-CCCAAA-CCAAA-CCTTAAACCCCAAACCAAACTC-TTAAACC-CTAAA-TCAAAAC
**
6739940 CATCCAAACCCTAAACCAAAT
60 C-TTTAAACCCTAAACCAAAT
* *
6739961 -CTTCAAA-TCAAACCTAAACTCTAAAACCCCAAACCAAAC-CTTAAA
1 CCTT-AAACCCAAACC-AAAC-CTTAAACCCCAAACCAAACTCTTAAA
6740006 TCAAACCTAA
Statistics
Matches: 228, Mismatches: 39, Indels: 45
0.73 0.12 0.14
Matches are distributed among these distances:
78 1 0.00
79 10 0.04
80 44 0.19
81 103 0.45
82 31 0.14
83 20 0.09
84 19 0.08
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (79 bp):
CCTTAAACCCAAACCAAACCTTAAACCCCAAACCAAACTCTTAAACCCTAAATCAAAACCTTTAA
ACCCTAAACCAAAT
Found at i:6739863 original size:60 final size:59
Alignment explanation
Indices: 6739631--6739925 Score: 249
Period size: 60 Copynumber: 4.9 Consensus size: 59
6739621 CGCCAAAATG
* * * * *
6739631 AAACCCTTAAACCCCAAACCAAA-CTCTTAAAACCTAAACCAAACTTTTAGACCCTAAATCA
1 AAACCCTTAAACCTCAAACCAAATC-CTT-AAACCCAAACCAAACCTTTAAACCCTAAA-CC
* * * *
6739692 AAATCTTTAAACC-CTAAACCAAATCCTTAAACCACAAACCAAACC-TTAAACCCCCAAATC
1 AAACCCTTAAACCTC-AAACCAAATCCTTAAACC-CAAACCAAACCTTTAAA-CCCTAAACC
* * * * * *
6739752 AAACCCTTATACATTAAATCAAAACCTTCATACTCCAAACCAAA-CTCTTAAACCCTAAACC
1 AAACCCTTAAACCTCAAACCAAATCCTT-AAAC-CCAAACCAAACCT-TTAAACCCTAAACC
* *
6739813 AAACCCTTAGACCTCAAACCAAGATCCTTAAACCCAAACCAAACCTTTAAATCCTAAACC
1 AAACCCTTAAACCTCAAACCAA-ATCCTTAAACCCAAACCAAACCTTTAAACCCTAAACC
* * * * *
6739873 AAATCCTTAAATCCT-AAATCAAAACCCTTAAACCCAAATCGAACCTTTAAACC
1 AAACCCTTAAA-CCTCAAA-CCAAATCCTTAAACCCAAACCAAACCTTTAAACC
6739926 TTTAAACCCC
Statistics
Matches: 189, Mismatches: 32, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
60 92 0.49
61 85 0.45
62 12 0.06
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.20
Consensus pattern (59 bp):
AAACCCTTAAACCTCAAACCAAATCCTTAAACCCAAACCAAACCTTTAAACCCTAAACC
Found at i:6739903 original size:101 final size:99
Alignment explanation
Indices: 6739635--6739925 Score: 272
Period size: 101 Copynumber: 2.9 Consensus size: 99
6739625 AAAATGAAAC
* * * * * *
6739635 CCTTAAACCCCAAACCAAA-CTCTTAAAACCTAAACCAAACTTTTAGACCCTAAATCAAAATCTT
1 CCTTAAACCCCAAACCAAACCT-TTAAATCCTAAACCAAAC-CTTAAATCCTAAATCAAAACCCT
*
6739699 TAAACCCTAAACCAAATCCTTAAACCACAAACCAAA
64 TAAACCCTAAACCAAACCCTTAAACCACAAACCAAA
* * * * *
6739735 CCTTAAACCCCCAAATCAAACCCTTATACAT--TAAATCAAAACCTTCATACTCC-AAA-CCAAA
1 CCTTAAA-CCCCAAACCAAA-CCTT-TAAATCCTAAA-CCAAACCTT-A-AATCCTAAATCAAAA
* * *
6739796 CTCTTAAACCCTAAACCAAACCCTTAGACCTCAAACCAAGA
60 CCCTTAAACCCTAAACCAAACCCTTAAACCACAAACCAA-A
6739837 TCCTTAAA-CCCAAACCAAACCTTTAAATCCTAAACCAAATCCTTAAATCCTAAATCAAAACCCT
1 -CCTTAAACCCCAAACCAAACCTTTAAATCCTAAACCAAA-CCTTAAATCCTAAATCAAAACCCT
* * *
6739901 TAAACCC-AAATCGAACCTTTAAACC
64 TAAACCCTAAACCAAACCCTTAAACC
6739926 TTTAAACCCC
Statistics
Matches: 152, Mismatches: 25, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
99 8 0.05
100 33 0.22
101 86 0.57
102 11 0.07
103 14 0.09
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.21
Consensus pattern (99 bp):
CCTTAAACCCCAAACCAAACCTTTAAATCCTAAACCAAACCTTAAATCCTAAATCAAAACCCTTA
AACCCTAAACCAAACCCTTAAACCACAAACCAAA
Found at i:6739904 original size:41 final size:40
Alignment explanation
Indices: 6739651--6739907 Score: 163
Period size: 41 Copynumber: 6.3 Consensus size: 40
6739641 ACCCCAAACC
* * * *
6739651 AAACTCTTAAAACCTAAACCAAA-CTTTTAGACCCTAAATCA
1 AAACCCTTAAACCCTAAACCAAATC-CTTA-AACCTAAATCA
* * * *
6739692 AAATCTTTAAACCCTAAACCAAATCCTTAAACC-ACAAACC
1 AAACCCTTAAACCCTAAACCAAATCCTTAAACCTA-AATCA
* * * * *
6739732 AAA-CCTTAAACCCCCAAATCAAACCCTTATACATTAAATCA
1 AAACCCTTAAA-CCCTAAACCAAATCCTTAAAC-CTAAATCA
* *
6739773 AAA-CCTTCATACTCC-AAACCAAA-CTCTTAAACCCTAAA-CC
1 AAACCCTT-AAAC-CCTAAACCAAATC-CTTAAA-CCTAAATCA
* * *
6739813 AAACCCTTAGA-CCTCAAACCAAGATCCTTAAACCCAAA-CC
1 AAACCCTTAAACCCT-AAACCAA-ATCCTTAAACCTAAATCA
* *
6739853 AAACCTTTAAATCCTAAACCAAATCCTTAAATCCTAAATCA
1 AAACCCTTAAACCCTAAACCAAATCCTTAAA-CCTAAATCA
6739894 AAACCCTTAAACCC
1 AAACCCTTAAACCC
6739908 AAATCGAACC
Statistics
Matches: 170, Mismatches: 29, Indels: 34
0.73 0.12 0.15
Matches are distributed among these distances:
38 2 0.01
39 16 0.09
40 68 0.40
41 76 0.45
42 8 0.05
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.21
Consensus pattern (40 bp):
AAACCCTTAAACCCTAAACCAAATCCTTAAACCTAAATCA
Found at i:6739989 original size:39 final size:38
Alignment explanation
Indices: 6739945--6740031 Score: 122
Period size: 38 Copynumber: 2.3 Consensus size: 38
6739935 CAATCCATCC
*
6739945 AAACCCTAAACCAAATCTTCAAATCAAACCTAAACTCTA
1 AAACCCTAAACCAAACCTT-AAATCAAACCTAAACTCTA
* * *
6739984 AAACCCCAAACCAAACCTTAAATCAAACCTAAACTTTT
1 AAACCCTAAACCAAACCTTAAATCAAACCTAAACTCTA
6740022 AAA-CCTAAAC
1 AAACCCTAAAC
6740032 TAACCCAAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
37 6 0.14
38 20 0.47
39 17 0.40
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (38 bp):
AAACCCTAAACCAAACCTTAAATCAAACCTAAACTCTA
Found at i:6740026 original size:38 final size:39
Alignment explanation
Indices: 6739945--6740018 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
6739935 CAATCCATCC
* *
6739945 AAACCCTAAACCAAATCTTCAAATCAAACCTAAACTCTA
1 AAACCCCAAACCAAACCTTCAAATCAAACCTAAACTCTA
6739984 AAACCCCAAACCAAACCTT-AAATCAAACCTAAACT
1 AAACCCCAAACCAAACCTTCAAATCAAACCTAAACT
6740019 TTTAAACCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
38 16 0.48
39 17 0.52
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (39 bp):
AAACCCCAAACCAAACCTTCAAATCAAACCTAAACTCTA
Found at i:6740103 original size:12 final size:12
Alignment explanation
Indices: 6739968--6740103 Score: 55
Period size: 12 Copynumber: 10.6 Consensus size: 12
6739958 AATCTTCAAA
6739968 TCAAACCTAAAC
1 TCAAACCTAAAC
*
6739980 TCTAAAACCCCAAAC
1 TC--AAA-CCTAAAC
6739995 -CAAACCTTAAA-
1 TCAAACC-TAAAC
6740006 TCAAACCTAAAC
1 TCAAACCTAAAC
*
6740018 TTTTAAACCTAAAC
1 --TCAAACCTAAAC
*
6740032 TAACCCAAACCCCAAAC
1 T----CAAA-CCTAAAC
*
6740049 -CAAACCCTAATC
1 TCAAA-CCTAAAC
*
6740061 -CAAACTCTAAAA
1 TCAAAC-CTAAAC
*
6740073 TCAAACATAAAC
1 TCAAACCTAAAC
* *
6740085 CCTAACCTAAAC
1 TCAAACCTAAAC
6740097 TCAAACC
1 TCAAACC
6740104 AACTTTTAAA
Statistics
Matches: 93, Mismatches: 16, Indels: 30
0.67 0.12 0.22
Matches are distributed among these distances:
11 7 0.08
12 51 0.55
13 5 0.05
14 15 0.16
15 6 0.06
16 3 0.03
17 6 0.06
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.17
Consensus pattern (12 bp):
TCAAACCTAAAC
Found at i:6740156 original size:18 final size:19
Alignment explanation
Indices: 6740110--6740157 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
6740100 AACCAACTTT
* *
6740110 TAAACCCAAACCAAATCCT
1 TAAACCCTAACCAAATCCC
6740129 TAAACCCTAACCAAA-CCC
1 TAAACCCTAACCAAATCCC
*
6740147 TAAGCCCTAAC
1 TAAACCCTAAC
6740158 TTAAGTCCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.44, C:0.40, G:0.02, T:0.15
Consensus pattern (19 bp):
TAAACCCTAACCAAATCCC
Found at i:6740648 original size:29 final size:31
Alignment explanation
Indices: 6740616--6740684 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
6740606 AAATTTTGTT
*
6740616 TTTTTAAGAATTTAAAA-T-AAAATAATTTA
1 TTTTTAAGAATATAAAATTCAAAATAATTTA
* *
6740645 TTTTTAA-AATATAAAATTCAAAATGATTTG
1 TTTTTAAGAATATAAAATTCAAAATAATTTA
*
6740675 GTTTTAAGAA
1 TTTTTAAGAA
6740685 ATATTTTTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 8 0.24
29 8 0.24
30 15 0.45
31 2 0.06
ACGTcount: A:0.48, C:0.01, G:0.07, T:0.43
Consensus pattern (31 bp):
TTTTTAAGAATATAAAATTCAAAATAATTTA
Found at i:6744965 original size:30 final size:31
Alignment explanation
Indices: 6744914--6744978 Score: 107
Period size: 30 Copynumber: 2.1 Consensus size: 31
6744904 TGAGGTGAAA
6744914 AGTTGTGATTTTGGTCGTTTATTGAATCTTG
1 AGTTGTGATTTTGGTCGTTTATTGAATCTTG
6744945 AGTTGTGA-TTTGGT-GATTTATTGAATCTTG
1 AGTTGTGATTTTGGTCG-TTTATTGAATCTTG
6744975 AGTT
1 AGTT
6744979 ATTATGTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
29 1 0.03
30 24 0.73
31 8 0.24
ACGTcount: A:0.18, C:0.05, G:0.26, T:0.51
Consensus pattern (31 bp):
AGTTGTGATTTTGGTCGTTTATTGAATCTTG
Found at i:6745839 original size:21 final size:21
Alignment explanation
Indices: 6745810--6745874 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 21
6745800 AATAAACTAT
*
6745810 CAATTATTATACCATTACCAA
1 CAATAATTATACCATTACCAA
*
6745831 CAATAATTA-A-C--T---AT
1 CAATAATTATACCATTACCAA
*
6745845 CAATTATTATACCATTACCAA
1 CAATAATTATACCATTACCAA
6745866 CAATAATTA
1 CAATAATTA
6745875 AGTTTTGTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 14
0.63 0.10 0.27
Matches are distributed among these distances:
14 9 0.28
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 1 0.03
20 1 0.03
21 17 0.53
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (21 bp):
CAATAATTATACCATTACCAA
Found at i:6745846 original size:35 final size:35
Alignment explanation
Indices: 6745804--6745875 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
6745794 AGTTTAAATA
6745804 AACTATCAATTATTATACCATTACCAACAATAATT
1 AACTATCAATTATTATACCATTACCAACAATAATT
6745839 AACTATCAATTATTATACCATTACCAACAATAATT
1 AACTATCAATTATTATACCATTACCAACAATAATT
6745874 AA
1 AA
6745876 GTTTTGTAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.33
Consensus pattern (35 bp):
AACTATCAATTATTATACCATTACCAACAATAATT
Found at i:6750384 original size:28 final size:29
Alignment explanation
Indices: 6750329--6750393 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
6750319 TGAAGGCTTT
* **
6750329 TATCATTCATGCATTTGTTCATTTATTTG
1 TATCATTCATGCATTTATTCATACATTTG
*
6750358 -ATCATTCATTCATTTATTCATACATTTG
1 TATCATTCATGCATTTATTCATACATTTG
6750386 TAT-ATTCA
1 TATCATTCA
6750394 CTCAATAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 29 0.94
29 2 0.06
ACGTcount: A:0.26, C:0.15, G:0.06, T:0.52
Consensus pattern (29 bp):
TATCATTCATGCATTTATTCATACATTTG
Found at i:6753038 original size:4 final size:4
Alignment explanation
Indices: 6753029--6753063 Score: 52
Period size: 4 Copynumber: 8.2 Consensus size: 4
6753019 ATTACTTTAA
6753029 AAAT AAAT AAAAT AAAT AAAT AAAT AAAT GAAAT A
1 AAAT AAAT -AAAT AAAT AAAT AAAT AAAT -AAAT A
6753064 CCAAAAGAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 21 0.72
5 8 0.28
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:6753042 original size:9 final size:9
Alignment explanation
Indices: 6753028--6753056 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
6753018 AATTACTTTA
6753028 AAAATAAAT
1 AAAATAAAT
6753037 AAAATAAAT
1 AAAATAAAT
6753046 -AAATAAAT
1 AAAATAAAT
6753054 AAA
1 AAA
6753057 TGAAATACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AAAATAAAT
Found at i:6753047 original size:13 final size:13
Alignment explanation
Indices: 6753029--6753063 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
6753019 ATTACTTTAA
6753029 AAATAAATAAAAT
1 AAATAAATAAAAT
6753042 AAATAAAT-AAAT
1 AAATAAATAAAAT
6753054 AAATGAAATA
1 AAAT-AAATA
6753064 CCAAAAGAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:6754237 original size:44 final size:44
Alignment explanation
Indices: 6754184--6754541 Score: 216
Period size: 44 Copynumber: 7.9 Consensus size: 44
6754174 TATAGAAGAT
* * * *
6754184 TCCTTTAAATAGAGGCTTAATGACTTTTGAAAGATAAATCAAGC
1 TCCTCTAAATAGAGGCTCAACGACTTTTGAAAAATAAATCAAGC
* * * * *
6754228 TCCTCTAAATAGAGGTTTAACAACTTTTTGAAACTAAATAAATAAATC
1 TCCTCTAAATAGAGGCTCAACGAC-TTTTG-AA--AAATAAATCAAGC
* * * * * *
6754276 TCATCTAAACAGAGGTTCAACGACTTTTGAAAGATTAATTAAGC
1 TCCTCTAAATAGAGGCTCAACGACTTTTGAAAAATAAATCAAGC
* * * * *
6754320 TCTTTTAAATAAAGGCTCAACGAATTTT-AAAAGATGAATCAAGC
1 TCCTCTAAATAGAGGCTCAACGACTTTTGAAAA-ATAAATCAAGC
* * * * *
6754364 TCCTTTAAATAGAGGCACAATGATTTTTGAAAAATAAATAAATAAAGC
1 TCCTCTAAATAGAGGCTCAACGACTTTTG---AA-AAATAAATCAAGC
* * * * * *
6754412 TCATATAAACAGAGGCTCAACAACTTTTGAAAAATGAATCAGGC
1 TCCTCTAAATAGAGGCTCAACGACTTTTGAAAAATAAATCAAGC
** * * * * *
6754456 TTTTCTAAATAAAAGCTCAATGACTTTTGAAAAATAAACAAGTAAAGT
1 TCCTCTAAATAGAGGCTCAACGACTTTTGAAAAAT--A-AA-TCAAGC
* * *
6754504 TCATCTAAACAGAGGCTCAA-TACTTTTGAAAAATAAAT
1 TCCTCTAAATAGAGGCTCAACGACTTTTGAAAAATAAAT
6754542 AAATAAAGCC
Statistics
Matches: 241, Mismatches: 59, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
43 4 0.02
44 122 0.51
45 8 0.03
46 4 0.02
47 20 0.08
48 81 0.34
49 2 0.01
ACGTcount: A:0.44, C:0.14, G:0.13, T:0.30
Consensus pattern (44 bp):
TCCTCTAAATAGAGGCTCAACGACTTTTGAAAAATAAATCAAGC
Found at i:6754432 original size:136 final size:134
Alignment explanation
Indices: 6754187--6754550 Score: 390
Period size: 136 Copynumber: 2.7 Consensus size: 134
6754177 AGAAGATTCC
* * * * * *
6754187 TTTAAATAGAGGCTTAATGACTTTTGAAAGATAAATCAAGCTCCTCTAAATAGAGGTTTAACAAC
1 TTTAAATAAAGGCTCAATGACTTTTAAAAGATAAATCAAGCTCCTCTAAATAGAGGCTCAA-TA-
* * * * * * * *
6754252 TTTTTG-AAACTAAATAAATAAATCTCATCTAAACAGAGGTTCAACGACTTTTGAAAGATTAATT
64 TTTTTGAAAAATAAATAAATAAAGCTCATATAAACAGAGGCTCAACAACTTTTGAAAAATGAATC
6754316 AAGCTCT
129 AAGCT-T
* * * * *
6754323 TTTAAATAAAGGCTCAACGAATTTTAAAAGATGAATCAAGCTCCTTTAAATAGAGGCACAATGAT
1 TTTAAATAAAGGCTCAATGACTTTTAAAAGATAAATCAAGCTCCTCTAAATAGAGGCTCAAT-AT
6754388 TTTTGAAAAATAAATAAATAAAGCTCATATAAACAGAGGCTCAACAACTTTTGAAAAATGAATCA
65 TTTTGAAAAATAAATAAATAAAGCTCATATAAACAGAGGCTCAACAACTTTTGAAAAATGAATCA
*
6754453 GGCTT
130 AGCTT
* * * * *
6754458 TTCTAAATAAAAGCTCAATGACTTTTGAAAA-ATAAACAAGTAAAGTTCATCTAAACAGAGGCTC
1 TT-TAAATAAAGGCTCAATGACTTTT-AAAAGAT--A-AA-TCAAGCTCCTCTAAATAGAGGCTC
*
6754522 AATACTTTTGAAAAATAAATAAATAAAGC
60 AATATTTTTGAAAAATAAATAAATAAAGC
6754551 CTTTTTAAGT
Statistics
Matches: 189, Mismatches: 31, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
135 9 0.05
136 128 0.68
137 4 0.02
139 27 0.14
140 21 0.11
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (134 bp):
TTTAAATAAAGGCTCAATGACTTTTAAAAGATAAATCAAGCTCCTCTAAATAGAGGCTCAATATT
TTTGAAAAATAAATAAATAAAGCTCATATAAACAGAGGCTCAACAACTTTTGAAAAATGAATCAA
GCTT
Found at i:6754449 original size:92 final size:92
Alignment explanation
Indices: 6754332--6754537 Score: 258
Period size: 92 Copynumber: 2.2 Consensus size: 92
6754322 TTTTAAATAA
* * *
6754332 AGGCTCAACGAA-TTTT-AAAAGATGAATCAAGCTCCTT-TAAATAGAGGCACAATGATTTTTGA
1 AGGCTCAAC-AACTTTTGAAAA-ATGAATCAAGCT-CTTCTAAATAAAAGCACAATGACTTTTGA
*
6754394 AAAATAAATAAATAAAGCTCATATAAACAG
63 AAAATAAACAAATAAAGCTCATATAAACAG
* * *
6754424 AGGCTCAACAACTTTTGAAAAATGAATCAGGCTTTTCTAAATAAAAGCTCAATGACTTTTGAAAA
1 AGGCTCAACAACTTTTGAAAAATGAATCAAGCTCTTCTAAATAAAAGCACAATGACTTTTGAAAA
* * *
6754489 ATAAACAAGTAAAGTTCATCTAAACAG
66 ATAAACAAATAAAGCTCATATAAACAG
*
6754516 AGGCTCAA-TACTTTTGAAAAAT
1 AGGCTCAACAACTTTTGAAAAAT
6754538 AAATAAATAA
Statistics
Matches: 100, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
91 17 0.17
92 79 0.79
93 4 0.04
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (92 bp):
AGGCTCAACAACTTTTGAAAAATGAATCAAGCTCTTCTAAATAAAAGCACAATGACTTTTGAAAA
ATAAACAAATAAAGCTCATATAAACAG
Found at i:6763481 original size:25 final size:25
Alignment explanation
Indices: 6763421--6763484 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
6763411 CATTTGAGAT
6763421 AAATTTTTAAAAAAATTTCACCTAG
1 AAATTTTTAAAAAAATTTCACCTAG
* * * *
6763446 AGATTTATTAAAAAATTTATCA-TTTG
1 AAATTT-TTAAAAAAATT-TCACCTAG
6763472 AAATTTTTAAAAA
1 AAATTTTTAAAAA
6763485 TCTCATCATT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
25 12 0.38
26 17 0.53
27 3 0.09
ACGTcount: A:0.48, C:0.06, G:0.05, T:0.41
Consensus pattern (25 bp):
AAATTTTTAAAAAAATTTCACCTAG
Found at i:6763626 original size:13 final size:13
Alignment explanation
Indices: 6763608--6763632 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6763598 AAATACTTTA
6763608 AAAATAAATAAAC
1 AAAATAAATAAAC
6763621 AAAATAAATAAA
1 AAAATAAATAAA
6763633 ATACCAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAATAAATAAAC
Found at i:6766137 original size:180 final size:181
Alignment explanation
Indices: 6765828--6766161 Score: 528
Period size: 180 Copynumber: 1.9 Consensus size: 181
6765818 AAATTTTGTT
* *
6765828 GTATTATTAGAAATTAAGATAAGAATCTAATGAAGAATGTCTTGTACAGTTGCAACTAGCTAGCA
1 GTATTATTAGAAATTAAGATAAGAATCTAATGAAGAATGTCTTGCACAGTCGCAACTAGCTAGCA
* ** * *
6765893 GATGTTGACAGGATCAAAGCCATCCAACTGCAATACGTTGATTCGTGCCCCTGGCATTCCTAGC-
66 GAGGTTGACAGGATCAAAGCCATCCAACTGCAATACACTGATTCGAGCCCCTGGCATCCCTAGCT
6765957 TCAGTCACCCTTTCTTCGGGAATACAATATATATATATATATATATATTTG
131 TCAGTCACCCTTTCTTCGGGAATACAATATATATATATATATATATATTTG
* *
6766008 GTATTATTAGAAATTAAGATCAGAATCTAATGAAGAATGTCTTGCACAGTCGCACCTAGCTAGCA
1 GTATTATTAGAAATTAAGATAAGAATCTAATGAAGAATGTCTTGCACAGTCGCAACTAGCTAGCA
* **
6766073 GAGGTTGACAGGATCAAAGCCATCCAGCTGCAATACACTGATTCGAGCCTCC-GTTATCCCTAGC
66 GAGGTTGACAGGATCAAAGCCATCCAACTGCAATACACTGATTCGAGCC-CCTGGCATCCCTAGC
*
6766137 TTCAGTCACCCTTTCTTGGGGAATA
130 TTCAGTCACCCTTTCTTCGGGAATA
6766162 AACTGATGGT
Statistics
Matches: 139, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
180 114 0.82
181 25 0.18
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (181 bp):
GTATTATTAGAAATTAAGATAAGAATCTAATGAAGAATGTCTTGCACAGTCGCAACTAGCTAGCA
GAGGTTGACAGGATCAAAGCCATCCAACTGCAATACACTGATTCGAGCCCCTGGCATCCCTAGCT
TCAGTCACCCTTTCTTCGGGAATACAATATATATATATATATATATATTTG
Found at i:6772068 original size:130 final size:126
Alignment explanation
Indices: 6771811--6772149 Score: 306
Period size: 130 Copynumber: 2.6 Consensus size: 126
6771801 TTAATAATTT
* ** * * * *
6771811 CATAATAAAAAATTGAAGGAGATTATTGAAGATATTTTTTATTAAAAAAAAAAGCCTTCAATAAT
1 CATAATAAAAAATTAAAGGAGATTATTGAAGGCATTTTCT-GTAAAAAAAACA-CCATCAATAAT
* * * * * * ** *
6771876 TTCTTGTAAAAATTTTCAGTGGATTATTGAAG--GTATTTGCGATTAAAAATGCCTTCAATAATC
64 TCCTT-TAAAATTTTTCAATAGATAATGGAAGACGT-TTT-TTACTAAAAATGCCTTCAATAATC
6771939 AC
126 -C
* * *
6771941 C-TAATAAAATATTAAAGGGGATTATTGAAGGCATTTTCTGTAAAAAAGAAAACACCATGAATAA
1 CATAATAAAAAATTAAAGGAGATTATTGAAGGCATTTTCTGT--AAAA-AAAACACCATCAATAA
*
6772005 TTTCCTTTAAAATTTTTCAATAGATAATGGAAGACGTTTTTTACTAAAAATGCCTTCAGTAATCC
63 -TTCCTTTAAAATTTTTCAATAGATAATGGAAGACGTTTTTTACTAAAAATGCCTTCAATAATCC
** * ** * ** *
6772070 CATAATAAAAAATTGGAGGAGATTATTGAATGTGTTTTTTGTAAAAAAAATGCCTTCAATAATTC
1 CATAATAAAAAATTAAAGGAGATTATTGAAGGCATTTTCTGTAAAAAAAACACCATCAATAATTC
6772135 CTTTAAAATTTTTCA
66 CTTTAAAATTTTTCA
6772150 GTAAATTATT
Statistics
Matches: 170, Mismatches: 32, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
126 18 0.11
127 12 0.07
128 5 0.03
129 34 0.20
130 86 0.51
131 13 0.08
132 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.35
Consensus pattern (126 bp):
CATAATAAAAAATTAAAGGAGATTATTGAAGGCATTTTCTGTAAAAAAAACACCATCAATAATTC
CTTTAAAATTTTTCAATAGATAATGGAAGACGTTTTTTACTAAAAATGCCTTCAATAATCC
Found at i:6772158 original size:63 final size:60
Alignment explanation
Indices: 6772091--6772270 Score: 179
Period size: 63 Copynumber: 3.0 Consensus size: 60
6772081 ATTGGAGGAG
* * *
6772091 ATTATTGAATGTGTTTTTTGTAAAAAAAATGCCTTCAATAATTCCTTTAAAATTTTTCAGT
1 ATTATTGAAGGTATTTTTTGTAAAAAAAATGCCTTTAATAATTCCTTTAAAATTTTTC-GT
* * * *
6772152 AAATTATTGAAGGCATTTTCTGTAAAAAAAATACCTTTAATAAGT--TTTAAAATTTTT--T
1 --ATTATTGAAGGTATTTTTTGTAAAAAAAATGCCTTTAATAATTCCTTTAAAATTTTTCGT
* ** * *
6772210 ATTATTGAAGGTGTTTTTTACAAAAAAAAAAGCCTTTAATAAGTTCCTTTAAAAATTTTCG
1 ATTATTGAAGGTATTTTTT-GTAAAAAAAATGCCTTTAATAA-TTCCTTTAAAATTTTTCG
6772271 GTGCATTATT
Statistics
Matches: 95, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
56 16 0.17
57 18 0.19
58 2 0.02
60 11 0.12
61 12 0.13
63 36 0.38
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (60 bp):
ATTATTGAAGGTATTTTTTGTAAAAAAAATGCCTTTAATAATTCCTTTAAAATTTTTCGT
Found at i:6777502 original size:13 final size:13
Alignment explanation
Indices: 6777484--6777520 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
6777474 CTTCTCAATG
6777484 TCTTTATATATGT
1 TCTTTATATATGT
*
6777497 TCTTTACATATGT
1 TCTTTATATATGT
*
6777510 TTTTTATATAT
1 TCTTTATATAT
6777521 TTGTTTTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.62
Consensus pattern (13 bp):
TCTTTATATATGT
Found at i:6778931 original size:161 final size:158
Alignment explanation
Indices: 6778723--6779461 Score: 644
Period size: 161 Copynumber: 4.6 Consensus size: 158
6778713 AATTTACAGT
* * * * * * * *
6778723 TATTGTTTTGTTTTAATAATTTTGATAGTTTCAATACATGATATTAAACTTATCCAAATTATT-A
1 TATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCCAAATAATTGA
* ** * **
6778787 ACCTTAGTTTTCATGGTTGATATGTATGAAAAAGTTATTGTTTACATCTATTTAGGACATTTTGT
66 A-CTTGGTTTTCACAGTTGATATGTGTGAAAAAGTTATCATTTACATCTATTTAGGACATTTTGT
** *
6778852 GCCATTAATAGGTAAAAATAAAAATTTAGACA
130 GCTGTTAAAAGG-AAAAATAAAAATTT-G-CA
* * * * *
6778884 AATTGTTCTATTTTAAAAGTTTGGATAGCTCCAATACATGGTATTAAACTTGTCCGAATAATTGA
1 TATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCCAAATAATTGA
* * *
6778949 ACTTGGTTTCCACAGTTGATATGTGTGAAAAAGTTATCATTTACATCTATTTAAGACTTTTTGTG
66 ACTTGGTTTTCACAGTTGATATGTGTGAAAAAGTTATCATTTACATCTATTTAGGACATTTTGTG
* * * ** **
6779014 CTGCTAAGAGGCAAACATGCAAATTTGTTGT
131 CTGTTAAAAGG-AAAAATAAAAATTTG--CA
* * * *
6779045 TATTGTTCTATTTTAACAGTTCGTATAGCTTCAATTCATGATATTAAACTTGTCAAAATAATTGA
1 TATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCCAAATAATTGA
* * * ** * *
6779110 AATTGGTTTTCACAGTTGATATGTGTGAAAAAGTTAACGTTTACGCCTGTTTAGGACATTTTATG
66 ACTTGGTTTTCACAGTTGATATGTGTGAAAAAGTTATCATTTACATCTATTTAGGACATTTTGTG
* * *
6779175 CTGTAAAAAAGGCAAAATGCAAAA-TTGCTA
131 CTGT-TAAAAGGAAAAAT-AAAAATTTGC-A
* * *** *
6779205 TTATTGTTCTATTTTAACAGCTTGGATAGCTTTAATACATGATATTAAACTTGTTTGAATGATTG
1 -TATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCCAAATAATTG
** * *
6779270 AACTTGG-TTTCTATGGTTGATATGTGTGAAAAAGTTGTCATTTACATCTATTTAGAACTATTTT
65 AACTTGGTTTTC-ACAGTTGATATGTGTGAAAAAGTTATCATTTACATCTATTTAGGAC-ATTTT
* * * * *
6779334 -TTCTGTTAAAAGATAAAAATACAAATTTACTGT
128 GTGCTGTTAAAAG-GAAAAATAAAAATTTGC--A
** * * * * * * *
6779367 TATTAATCTATTTTAACAGTTTGGATGGCTTCAATATATGATATTCAACTTTTTCGAATGATTGA
1 TATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCCAAATAATTGA
6779432 ACTTGG-TTTC-CATGATTGATATGTGTGAAA
66 ACTTGGTTTTCACA-G-TTGATATGTGTGAAA
6779462 GGCCCAAATG
Statistics
Matches: 466, Mismatches: 99, Indels: 26
0.79 0.17 0.04
Matches are distributed among these distances:
160 14 0.03
161 437 0.94
162 15 0.03
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (158 bp):
TATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCCAAATAATTGA
ACTTGGTTTTCACAGTTGATATGTGTGAAAAAGTTATCATTTACATCTATTTAGGACATTTTGTG
CTGTTAAAAGGAAAAATAAAAATTTGCA
Found at i:6780982 original size:21 final size:21
Alignment explanation
Indices: 6780919--6780976 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
6780909 GGCCTTCTAT
6780919 TACTCAAGTTGGTGATAATGA
1 TACTCAAGTTGGTGATAATGA
6780940 TACTCAAGTTGGTGATAATGA
1 TACTCAAGTTGGTGATAATGA
*
6780961 TACTTAAGTTGGTGAT
1 TACTCAAGTTGGTGAT
6780977 CGTGATGTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (21 bp):
TACTCAAGTTGGTGATAATGA
Found at i:6783229 original size:13 final size:13
Alignment explanation
Indices: 6783213--6783247 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
6783203 CTCAATGTCT
6783213 TTTATATATGTTC
1 TTTATATATGTTC
* *
6783226 TTTACATATGTTT
1 TTTATATATGTTC
6783239 TTTATATAT
1 TTTATATAT
6783248 TCATTTTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.63
Consensus pattern (13 bp):
TTTATATATGTTC
Found at i:6784927 original size:322 final size:320
Alignment explanation
Indices: 6784393--6785189 Score: 825
Period size: 322 Copynumber: 2.5 Consensus size: 320
6784383 ATAATTTGCA
* * * ** * * * * *
6784393 ATTTACGTCTATTTACAACT-TTTCTGTCATTACAAGGTAATAATGCAAATTTACAATTATTGTT
1 ATTTACATCTATTTAGAACTATTTTTGTTGTTAAAAGGCAAAAATACAAATTTACTATTATTGTT
* * * * * * * * *
6784457 TTATTTTAATAATTTTGATAGTTTCAATACATGTTATTAAACTTATCTAAATTATTGACCTTAGT
66 CTATTTTAA-CAGTTTGATAGCTTCAATACATGATATTAAATTTATC-AAATAATTGAACTTGGT
* * ** * * *
6784522 TTTCACAGTTGATATGTATGAAAAAGTTATTATTTACATCTATTTAGGATAGTTTATGCCATTAA
129 TTTCACAATTGATATGTGTGAAAAAGTTAACATTTACACCTATTTAGGACAGTTTATGCCATAAA
*
6784587 TAGGTAAAAATACAAATTTAGACA-AATTGTTCTATTTTAAAAGTTTGGATAGCTCCAATACATG
194 AAGGTAAAAATACAAATTT-GACATAATTGTTCTATTTTAAAAGTTTGGATAGCTCCAATACATG
* * *
6784651 ATATTAAACTTGT-TCGAATAATTGAACTTGATTT-TCACAGTTGATATGTGTGAAAAAGTTATC
258 ATATTAAACTTATCT-AAATAATTGAACTTGGTTTCT-ACAGTTGATATGTGTGAAAAAGTTATC
* * * * ** *
6784714 ATTTACATCTGTTTA-AGACT-TTTTGTGTTGTTAAGAGGCAAACATGCAAATTTGTTGTTATTG
1 ATTTACATCTATTTAGA-ACTATTTT-TGTTGTTAAAAGGCAAAAATACAAATTTACTATTATTG
* * *
6784777 TTCTATTTTAACAGTTTGCATAGCTTCAATACATGACATTAAATTTGTCAAAATAATTGAAATTG
64 TTCTATTTTAACAGTTTG-ATAGCTTCAATACATGATATTAAATTTATC-AAATAATTGAACTTG
* * * * **
6784842 GTTTTCACAATTGATATGTGTGAAAAAGTTAACGTTTACGCCTGTTTAGGACATTTTATGCTGTA
127 GTTTTCACAATTGATATGTGTGAAAAAGTTAACATTTACACCTATTTAGGACAGTTTATGCCAT-
* * * * * **
6784907 AAAAAGG-CAAAATGCAAATTTGATATTATTGTTCTATTTTAACAGTTTGGATAGCTTTAATACA
191 AAAAAGGTAAAAATACAAATTTGACATAATTGTTCTATTTTAAAAGTTTGGATAGCTCCAATACA
* **
6784971 TGATATTAAACTTATCTAAATGATTGAACTTGGTTTCTATGGTTGATATGTGTGAAAAAGTTATC
256 TGATATTAAACTTATCTAAATAATTGAACTTGGTTTCTACAGTTGATATGTGTGAAAAAGTTATC
* **
6785036 ATTTACATCTATTTAGAACTATTTTTGTTGTTAAAAGGTAAAAATACAAATTTACTATTATTAAT
1 ATTTACATCTATTTAGAACTATTTTTGTTGTTAAAAGGCAAAAATACAAATTTACTATTATTGTT
* * * * * *
6785101 CTATTTTTAACAGTTTGAATGGCTTTAATACATGATATTCAACTTTTTCGAATGATTGAACTTGG
66 CTA-TTTTAACAGTTTG-ATAGCTTCAATACATGATATT-AAATTTATCAAATAATTGAACTTGG
**
6785166 TTTTCATGATTGATATGTGTGAAA
128 TTTTCACAATTGATATGTGTGAAA
6785190 GGCCCAAATG
Statistics
Matches: 390, Mismatches: 75, Indels: 20
0.80 0.15 0.04
Matches are distributed among these distances:
320 1 0.00
321 27 0.07
322 277 0.71
323 78 0.20
324 7 0.02
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (320 bp):
ATTTACATCTATTTAGAACTATTTTTGTTGTTAAAAGGCAAAAATACAAATTTACTATTATTGTT
CTATTTTAACAGTTTGATAGCTTCAATACATGATATTAAATTTATCAAATAATTGAACTTGGTTT
TCACAATTGATATGTGTGAAAAAGTTAACATTTACACCTATTTAGGACAGTTTATGCCATAAAAA
GGTAAAAATACAAATTTGACATAATTGTTCTATTTTAAAAGTTTGGATAGCTCCAATACATGATA
TTAAACTTATCTAAATAATTGAACTTGGTTTCTACAGTTGATATGTGTGAAAAAGTTATC
Found at i:6785167 original size:162 final size:164
Alignment explanation
Indices: 6784426--6785189 Score: 747
Period size: 161 Copynumber: 4.7 Consensus size: 164
6784416 CTGTCATTAC
* * * * * * * *
6784426 AAGGTAATAATGCAAATTT-ACAATTATTGTTTTATTTTAATAATTTTGATAGTTTCAATACATG
1 AAGGTAAAAATACAAATTTGACTATTATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATG
* * * * * * * *
6784490 TTATTAAAC-TTATCTAAATTATTGACCTTAGTTTTCACAGTTGATATGTATGAAAAAGTTATTA
66 ATATTAAACTTTTTCAAAATAATTGAACTTGGTTTTCACAGTTGATATGTGTGAAAAAGTTATCA
* * **
6784554 TTTACATCTATTTAGGA-TAGTTTATGCCATTAA
131 TTTACATCTATTTAGAACTATTTTATGCTGTTAA
* * * *
6784587 TAGGTAAAAATACAAATTTAGAC-A-AATTGTTCTATTTTAAAAGTTTGGATAGCTCCAATACAT
1 AAGGTAAAAATACAAATTT-GACTATTATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACAT
* * *
6784650 GATATTAAACTTGTTC-GAATAATTGAACTTGATTTTCACAGTTGATATGTGTGAAAAAGTTATC
65 GATATTAAACTTTTTCAAAATAATTGAACTTGGTTTTCACAGTTGATATGTGTGAAAAAGTTATC
* * *
6784714 ATTTACATCTGTTTA-AGACT-TTTTGTGTTGTTAA
130 ATTTACATCTATTTAGA-ACTATTTTATGCTGTTAA
* * * * * * *
6784748 GAGGCAAACATGCAAATTTG-TTGTTATTGTTCTATTTTAACAGTTTGCATAGCTTCAATACATG
1 AAGGTAAAAATACAAATTTGACTATTATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATG
* * * * * *
6784812 ACATTAAA-TTTGTCAAAATAATTGAAATTGGTTTTCACAATTGATATGTGTGAAAAAGTTAACG
66 ATATTAAACTTTTTCAAAATAATTGAACTTGGTTTTCACAGTTGATATGTGTGAAAAAGTTATCA
** * * *
6784876 TTTACGCCTGTTTAGGAC-ATTTTATGCTGTAAAA
131 TTTACATCTATTTAGAACTATTTTATGCTGT-TAA
* * *
6784910 AAGG-CAAAATGCAAATTTGA-TATTATTGTTCTATTTTAACAGTTTGGATAGCTTTAATACATG
1 AAGGTAAAAATACAAATTTGACTATTATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATG
* * * **
6784973 ATATTAAAC-TTATCTAAATGATTGAACTTGG-TTTCTATGGTTGATATGTGTGAAAAAGTTATC
66 ATATTAAACTTTTTCAAAATAATTGAACTTGGTTTTC-ACAGTTGATATGTGTGAAAAAGTTATC
*
6785036 ATTTACATCTATTTAGAACTATTTT-TGTTGTTAA
130 ATTTACATCTATTTAGAACTATTTTATGCTGTTAA
** * * *
6785070 AAGGTAAAAATACAAATTT-ACTATTATTAATCTATTTTTAACAGTTTGAATGGCTTTAATACAT
1 AAGGTAAAAATACAAATTTGACTATTATTGTTCTA-TTTTAACAGTTTGGATAGCTTCAATACAT
* * * *
6785134 GATATTCAACTTTTTC-GAATGATTGAACTTGGTTTTCA-TGATTGATATGTGTGAAA
65 GATATTAAACTTTTTCAAAATAATTGAACTTGGTTTTCACAG-TTGATATGTGTGAAA
6785190 GGCCCAAATG
Statistics
Matches: 498, Mismatches: 84, Indels: 41
0.80 0.13 0.07
Matches are distributed among these distances:
160 16 0.03
161 390 0.78
162 82 0.16
163 10 0.02
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (164 bp):
AAGGTAAAAATACAAATTTGACTATTATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATG
ATATTAAACTTTTTCAAAATAATTGAACTTGGTTTTCACAGTTGATATGTGTGAAAAAGTTATCA
TTTACATCTATTTAGAACTATTTTATGCTGTTAA
Found at i:6786502 original size:33 final size:34
Alignment explanation
Indices: 6786452--6786534 Score: 134
Period size: 33 Copynumber: 2.5 Consensus size: 34
6786442 GCTAAATTCG
*
6786452 AAATTTAGTGGCGTTTGTAGTATAAAATG-CACT
1 AAATTTAGTGGCATTTGTAGTATAAAATGCCACT
6786485 AAATTTTAG-GGCATTTGTAGTATAAAATGCCACT
1 AAA-TTTAGTGGCATTTGTAGTATAAAATGCCACT
6786519 AAATTTAGTGGCATTT
1 AAATTTAGTGGCATTT
6786535 TTCTATACAA
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
33 27 0.59
34 19 0.41
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (34 bp):
AAATTTAGTGGCATTTGTAGTATAAAATGCCACT
Found at i:6788886 original size:19 final size:20
Alignment explanation
Indices: 6788864--6788917 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
6788854 ATATATAAAA
6788864 TAAAATAATAAAATTTA-AT
1 TAAAATAATAAAATTTATAT
*
6788883 TAAAATAATAAAAATATATAT
1 TAAAATAAT-AAAATTTATAT
6788904 T-AAAT-ATAAAATTT
1 TAAAATAATAAAATTT
6788918 TGATCAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 6 0.19
19 11 0.35
20 11 0.35
21 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAATAATAAAATTTATAT
Found at i:6789209 original size:18 final size:18
Alignment explanation
Indices: 6789186--6789223 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
6789176 TTTTGTACTT
6789186 ATTTATGAAGTACCACTA
1 ATTTATGAAGTACCACTA
6789204 ATTTATGAAGTACCACTA
1 ATTTATGAAGTACCACTA
6789222 AT
1 AT
6789224 GTTAGCGACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (18 bp):
ATTTATGAAGTACCACTA
Found at i:6790118 original size:3 final size:3
Alignment explanation
Indices: 6790110--6790137 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6790100 ACCATCAAAG
6790110 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
6790138 CTCCACCACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:6793614 original size:80 final size:79
Alignment explanation
Indices: 6793481--6793640 Score: 225
Period size: 80 Copynumber: 2.0 Consensus size: 79
6793471 CAAGTGTGTT
6793481 GATTTCACTCTTGTGGCTAGTTCCTCTATGCTTTTCAATTTTCATTTTGTGATTCATTTGATGGT
1 GATTTCACTC-TGTGGCTAGTTCCTCTATGCTTTTCAATTTTCATTTTGTGATTCATTTGATGGT
* * *
6793546 GCGTTCTTTGTTTGG
65 ACATTCTTTATTTGG
* *
6793561 GATTTCACTC-GTGGCTAGTTCCTCT-TGTGTCTTTCCATTTTCATTTTGCTGATTCATTTGATG
1 GATTTCACTCTGTGGCTAGTTCCTCTATG-CT-TTTCAATTTTCATTTTG-TGATTCATTTGATG
6793624 GTACATTCTTTATTTGG
63 GTACATTCTTTATTTGG
6793641 TTAGTAGTGA
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
77 2 0.03
78 16 0.22
79 16 0.22
80 38 0.53
ACGTcount: A:0.13, C:0.17, G:0.19, T:0.51
Consensus pattern (79 bp):
GATTTCACTCTGTGGCTAGTTCCTCTATGCTTTTCAATTTTCATTTTGTGATTCATTTGATGGTA
CATTCTTTATTTGG
Found at i:6800926 original size:15 final size:15
Alignment explanation
Indices: 6800906--6800939 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
6800896 TGTCCCTTCA
6800906 CCCTCCCCTCCCCTT
1 CCCTCCCCTCCCCTT
6800921 CCCTCCCCTCCCCTT
1 CCCTCCCCTCCCCTT
6800936 CCCT
1 CCCT
6800940 TGCCGCCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.74, G:0.00, T:0.26
Consensus pattern (15 bp):
CCCTCCCCTCCCCTT
Found at i:6800940 original size:5 final size:5
Alignment explanation
Indices: 6800906--6800939 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
6800896 TGTCCCTTCA
* *
6800906 CCCTC CCCTC CCCTT CCCTC CCCTC CCCTT CCCT
1 CCCTC CCCTC CCCTC CCCTC CCCTC CCCTC CCCT
6800940 TGCCGCCTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.00, C:0.74, G:0.00, T:0.26
Consensus pattern (5 bp):
CCCTC
Found at i:6803686 original size:33 final size:34
Alignment explanation
Indices: 6803626--6803721 Score: 99
Period size: 33 Copynumber: 2.9 Consensus size: 34
6803616 TTCATTTTTG
*
6803626 GAAAA-TTTTAAAGGTTTTTGGAGATGTATATC-A
1 GAAAACTTTTAAAGGTTTTT-GAAATGTATATCTA
*
6803659 -AAAACTTTTAAAGGTTTTTGAAAATGTACATCTA
1 GAAAACTTTTAAAGGTTTTTG-AAATGTATATCTA
** * *
6803693 GAATCCTTTTAGAGGTTTTAGAAATGTAT
1 GAAAACTTTTAAAGGTTTTTGAAATGTAT
6803722 GTTTCCAAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
32 5 0.10
33 23 0.44
34 8 0.15
35 16 0.31
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.40
Consensus pattern (34 bp):
GAAAACTTTTAAAGGTTTTTGAAATGTATATCTA
Found at i:6806261 original size:28 final size:28
Alignment explanation
Indices: 6806229--6806282 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
6806219 GATATACAAC
6806229 ATATGCATTAAAAAAGTTGCTAAATAAA
1 ATATGCATTAAAAAAGTTGCTAAATAAA
* * *
6806257 ATATGCATTAAAGAATTTGTTAAATA
1 ATATGCATTAAAAAAGTTGCTAAATA
6806283 TATAAATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (28 bp):
ATATGCATTAAAAAAGTTGCTAAATAAA
Found at i:6808065 original size:21 final size:21
Alignment explanation
Indices: 6808039--6808090 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
6808029 TTAGCTGATG
6808039 TGGCTATTGACCATTCTAATA
1 TGGCTATTGACCATTCTAATA
6808060 TGGCTATTGACCATTCTAATA
1 TGGCTATTGACCATTCTAATA
6808081 TGGCT-TTGAC
1 TGGCTATTGAC
6808091 TTCAATGATG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 5 0.16
21 26 0.84
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38
Consensus pattern (21 bp):
TGGCTATTGACCATTCTAATA
Found at i:6808309 original size:13 final size:13
Alignment explanation
Indices: 6808291--6808338 Score: 71
Period size: 13 Copynumber: 3.7 Consensus size: 13
6808281 AAAACTTGCT
*
6808291 ATAATATTCTCTC
1 ATAATATTCTATC
6808304 ATAATATTCTATC
1 ATAATATTCTATC
6808317 ATAATATT-TAGTC
1 ATAATATTCTA-TC
6808330 ATAATATTC
1 ATAATATTC
6808339 ATATATTATC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
12 2 0.06
13 30 0.94
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.46
Consensus pattern (13 bp):
ATAATATTCTATC
Found at i:6810935 original size:34 final size:32
Alignment explanation
Indices: 6810897--6810960 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 32
6810887 TTTTTAGATT
*
6810897 TTTTTATTGTTGGTTTTATCCTATTTTTATTTAC
1 TTTTTATTATTGGTTTTAT--TATTTTTATTTAC
*
6810931 TTTTTATTATTTGTTTTATTATTTTTATTT
1 TTTTTATTATTGGTTTTATTATTTTTATTT
6810961 TTGTTTCACA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 11 0.39
34 17 0.61
ACGTcount: A:0.16, C:0.05, G:0.06, T:0.73
Consensus pattern (32 bp):
TTTTTATTATTGGTTTTATTATTTTTATTTAC
Found at i:6811107 original size:19 final size:18
Alignment explanation
Indices: 6811083--6811121 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
6811073 TTGTTATTAT
6811083 TTTTATATATTTATTTCTA
1 TTTTATATATTTATTT-TA
*
6811102 TTTTATTTATTTATTTTA
1 TTTTATATATTTATTTTA
6811120 TT
1 TT
6811122 ATTTTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTATATATTTATTTTA
Found at i:6811110 original size:15 final size:14
Alignment explanation
Indices: 6811090--6811127 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
6811080 TATTTTTATA
6811090 TATTTATTTCTATTT
1 TATTTATTT-TATTT
6811105 TATTTA-TTTATTT
1 TATTTATTTTATTT
6811118 TA-TTATTTTA
1 TATTTATTTTA
6811128 AAATTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.14
13 11 0.50
14 2 0.09
15 6 0.27
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (14 bp):
TATTTATTTTATTT
Found at i:6812700 original size:17 final size:18
Alignment explanation
Indices: 6812678--6812721 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 18
6812668 GAATCAATAA
6812678 AAAAAATTAAAAAAAAG-
1 AAAAAATTAAAAAAAAGC
6812695 AAAAAATT-AAAAAAAGC
1 AAAAAATTAAAAAAAAGC
6812712 AAAAAATTAA
1 AAAAAATTAA
6812722 GAGTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.32
17 16 0.64
18 1 0.04
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (18 bp):
AAAAAATTAAAAAAAAGC
Found at i:6822982 original size:10 final size:10
Alignment explanation
Indices: 6822966--6823025 Score: 58
Period size: 10 Copynumber: 6.5 Consensus size: 10
6822956 AGATATTTTT
6822966 AATTTATATA
1 AATTTATATA
*
6822976 TATTTATATA
1 AATTTATATA
6822986 AATTTATAT-
1 AATTTATATA
*
6822995 -ATTTTTA-A
1 AATTTATATA
6823003 AATTT-T-TA
1 AATTTATATA
6823011 AATTTATATA
1 AATTTATATA
*
6823021 TATTT
1 AATTT
6823026 TTGTTAAAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 13 0.32
9 5 0.12
10 23 0.56
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
AATTTATATA
Found at i:6823139 original size:21 final size:21
Alignment explanation
Indices: 6823115--6823157 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
6823105 GTCATTTACT
6823115 TAACTATTGCAATAACTTCCA
1 TAACTATTGCAATAACTTCCA
6823136 TAACTATTGCAATAACTTCCA
1 TAACTATTGCAATAACTTCCA
6823157 T
1 T
6823158 TAAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (21 bp):
TAACTATTGCAATAACTTCCA
Found at i:6824432 original size:17 final size:18
Alignment explanation
Indices: 6824407--6824440 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6824397 GAATACTTGC
*
6824407 AGAAGAAAAATT-TTAAG
1 AGAAAAAAAATTCTTAAG
6824424 AGAAAAAAAATTCTTAA
1 AGAAAAAAAATTCTTAA
6824441 TAGGTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.24
Consensus pattern (18 bp):
AGAAAAAAAATTCTTAAG
Found at i:6825391 original size:21 final size:21
Alignment explanation
Indices: 6825365--6825406 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
6825355 TTGACATTGC
6825365 CTTCTAAAATATGCTGAATCA
1 CTTCTAAAATATGCTGAATCA
6825386 CTTCTAAAATATGCTGAATCA
1 CTTCTAAAATATGCTGAATCA
6825407 TATCATACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (21 bp):
CTTCTAAAATATGCTGAATCA
Found at i:6825761 original size:2 final size:2
Alignment explanation
Indices: 6825754--6825801 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
6825744 AGGTAGATGG
*
6825754 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6825796 TA TA TA
1 TA TA TA
6825802 AAATTGTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6826936 original size:2 final size:2
Alignment explanation
Indices: 6826925--6826963 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
6826915 ACGGCAAATG
6826925 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6826964 TCACTTCCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:6827289 original size:2 final size:2
Alignment explanation
Indices: 6827282--6827314 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
6827272 CATACATACA
6827282 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6827315 TTTTTCGACT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:6829509 original size:50 final size:51
Alignment explanation
Indices: 6829451--6829551 Score: 161
Period size: 50 Copynumber: 2.0 Consensus size: 51
6829441 CTCTATCTTT
*
6829451 ATAATTTTT-TCTGATTTTTATTTTAT-AAAAAAATACTCTAACAACTTCTG
1 ATAATTTTTCT-TGATTTTTATTTTATAAAAAAAAAACTCTAACAACTTCTG
6829501 ATAATTTTTCTTGATTTTTATTTTATAAAAAAAAAAACTCTAACAACTTCT
1 ATAATTTTTCTTGATTTTTATTTTAT-AAAAAAAAAACTCTAACAACTTCT
6829552 AACTTCTACG
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
50 24 0.51
51 1 0.02
52 22 0.47
ACGTcount: A:0.39, C:0.12, G:0.03, T:0.47
Consensus pattern (51 bp):
ATAATTTTTCTTGATTTTTATTTTATAAAAAAAAAACTCTAACAACTTCTG
Found at i:6831470 original size:3 final size:3
Alignment explanation
Indices: 6831462--6831517 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
6831452 TAAAATAATT
6831462 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6831510 TTA TTA TT
1 TTA TTA TT
6831518 TCCTTCAGAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:6834378 original size:4 final size:4
Alignment explanation
Indices: 6834371--6834397 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
6834361 TATATATATA
6834371 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
6834398 ATGCTCGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:6837164 original size:2 final size:2
Alignment explanation
Indices: 6837157--6837189 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6837147 ATAATCTCAA
6837157 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6837190 AACTAGCTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6838565 original size:26 final size:26
Alignment explanation
Indices: 6838530--6838591 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 26
6838520 GTAGATCTTG
*
6838530 ATTTCAATTTAAATAA-TTATCTAAAAT
1 ATTT-AATTTAAATAATTTAT-TAAAAA
6838557 ATTTAATTTAAATAATTTATTAAAAA
1 ATTTAATTTAAATAATTTATTAAAAA
*
6838583 ATTTTATTT
1 ATTTAATTT
6838592 GATAAATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 24 0.75
27 8 0.25
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (26 bp):
ATTTAATTTAAATAATTTATTAAAAA
Found at i:6838744 original size:16 final size:18
Alignment explanation
Indices: 6838723--6838755 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
6838713 TTAGATTTAA
6838723 AATTTTA-ATT-TATATT
1 AATTTTATATTATATATT
6838739 AATTTTATATTATATAT
1 AATTTTATATTATATAT
6838756 AGATAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
AATTTTATATTATATATT
Found at i:6841123 original size:2 final size:2
Alignment explanation
Indices: 6841116--6841142 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6841106 CAAAGCTAGA
6841116 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
6841143 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6841147 original size:2 final size:2
Alignment explanation
Indices: 6841142--6841180 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
6841132 ATATATATAT
6841142 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
6841181 AAGAAGCTGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:6841725 original size:5 final size:5
Alignment explanation
Indices: 6841715--6841739 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
6841705 ACCACATTAA
6841715 ACTCC ACTCC ACTCC ACTCC ACTCC
1 ACTCC ACTCC ACTCC ACTCC ACTCC
6841740 TCTGGTACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.60, G:0.00, T:0.20
Consensus pattern (5 bp):
ACTCC
Found at i:6844211 original size:28 final size:28
Alignment explanation
Indices: 6844154--6844211 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
6844144 TTTATGTTTT
*
6844154 TTAAATATATTTTAAAATACAAATTAAA
1 TTAAATATATTTTAAAATACAAATAAAA
*
6844182 TTAAA-ATATTTTATTAATA-AAATAATAA
1 TTAAATATATTTTA-AAATACAAATAA-AA
6844210 TT
1 TT
6844212 CGATCAAGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (28 bp):
TTAAATATATTTTAAAATACAAATAAAA
Found at i:6845655 original size:3 final size:3
Alignment explanation
Indices: 6845647--6845673 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
6845637 TACAATTAAT
6845647 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
6845674 ATAAATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6846765 original size:6 final size:6
Alignment explanation
Indices: 6846756--6846809 Score: 81
Period size: 6 Copynumber: 9.0 Consensus size: 6
6846746 TTTTTTTACA
* *
6846756 AAAATT AAAATT AAAATT AAGATT AAAATT AAAATT AAAATC AAAATT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
*
6846804 AGAATT
1 AAAATT
6846810 TTTTGGGCCT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:6847609 original size:3 final size:3
Alignment explanation
Indices: 6847603--6847651 Score: 71
Period size: 3 Copynumber: 16.3 Consensus size: 3
6847593 TTTTTACTAC
* * *
6847603 TAT TAT TAT TAT TAT TAT TGT TGT TGT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6847651 T
1 T
6847652 TTGTAATTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:6853687 original size:165 final size:162
Alignment explanation
Indices: 6853007--6853922 Score: 833
Period size: 159 Copynumber: 5.7 Consensus size: 162
6852997 AAAACACATA
* ** * * * * * *
6853007 TTCACACATATTAAGTATGGCAATCAAGTTCAATCATTCGAACAACTTTAATATTATGTATTAGA
1 TTCACACATATCAAGCGTGGCAACCAAGTTCAACCATTCGAACAAGTTTAATATCATATATTGGA
* * * * *
6853072 GCTATCTAAATTGTTAAAACAGAAATATAACTGA-AAATATATATTTTT-GCCCTTTGATGA-CA
66 GCTATCTAAACTGTTAAAATAGAAATATAACT-ACAAATTTATATTTTTAG-CATTTGATCAGCA
** *
6853134 CAAAAAGTCTTAAAAACATATAAATTATAACATT
129 CAAAAAGTCTTAAAAACATATAAATCGTAATATT
* * * * ** * **
6853168 TTTACATATATCAAACTTGATAGCCAAGTTCAATTATTC-AACAAGTTTAATATCATATATTGGA
1 TTCACACATATCAAGCGTGGCAACCAAGTTCAACCATTCGAACAAGTTTAATATCATATATTGGA
* * * *
6853232 GCTATTTAAAATGTTAAAATAGAAATGTAATTACAAATTTATATTTTTAGCATTTGAT-AGCAC-
66 GCTATCTAAACTGTTAAAATAGAAATATAACTACAAATTTATATTTTTAGCATTTGATCAGCACA
* * ** * *
6853295 AAATGTCCTAAAAACGCATAAATCATAACA-T
131 AAAAGTCTTAAAAACATATAAATCGTAATATT
* * * * * *
6853326 TTCACACATATCAAGTGTGGCAACCAAGTTTAACCATTAGGATAAGTTTAATATTATATATTGGA
1 TTCACACATATCAAGCGTGGCAACCAAGTTCAACCATTCGAACAAGTTTAATATCATATATTGGA
* * * * * *
6853391 GCTATCTAAACTATTAAAATAGAAATATAACT-CAAATTTA-CTTTTTACCTTTTGA-CAGTATA
66 GCTATCTAAACTGTTAAAATAGAAATATAACTACAAATTTATATTTTTAGCATTTGATCAGCACA
* *
6853453 AAAAGTCCTAAACACATATAAATCGTAATATT
131 AAAAGTCTTAAAAACATATAAATCGTAATATT
* * * * * * *
6853485 TTTACACATATCAAGTGTGGTAGCCAAGTTTAACCATTCGTACAAGTTTAATATCATATATTTGA
1 TTCACACATATCAAGCGTGGCAACCAAGTTCAACCATTCGAACAAGTTTAATATCATATATTGGA
* * * *
6853550 GCTATCTAAACTATTAAAATAGATATATATAAAACTAAAAATTTACATTTTTAGCATTTGATGA-
66 GCTATCTAAACTGTTAAAATAGA-A-ATAT--AACTACAAATTTATATTTTTAGCATTTGATCAG
*
6853614 CACAAAAAGTCTTAAAAACATATAAACCGTAATATT
127 CACAAAAAGTCTTAAAAACATATAAATCGTAATATT
* * *
6853650 TTCACACATATCAAGCGTGGCGACCAAGTTCAACCATTCGAACAAGTTTAAAATCATGTATTGGA
1 TTCACACATATCAAGCGTGGCAACCAAGTTCAACCATTCGAACAAGTTTAATATCATATATTGGA
* * * *
6853715 GCTATCTAGATTGTTAAAATGGAAATATAACTACAAATTTATATTTTT-GCCATTT-AACAGCAT
66 GCTATCTAAACTGTTAAAATAGAAATATAACTACAAATTTATATTTTTAG-CATTTGATCAGCA-
* *
6853778 AAAAAAGTCTTACATAGACATA-AAAT-GTAATATT
129 CAAAAAGTCTTA-A-AAACATATAAATCGTAATATT
* * * * ** * * * *
6853812 TTCACACATATCAAGCATGGCAGCTAAGTTTAAATATTTGGACAAGTTTAACATC--ATGTTGGA
1 TTCACACATATCAAGCGTGGCAACCAAGTTCAACCATTCGAACAAGTTTAATATCATATATTGGA
* * ** *
6853875 GTTATCTAAATTGTTAAAGCATAAATATAAC-AGCAAATTTATATTTTT
66 GCTATCTAAACTGTTAAAATAGAAATATAACTA-CAAATTTATATTTTT
6853923 TTCCCCTTTA
Statistics
Matches: 620, Mismatches: 115, Indels: 41
0.80 0.15 0.05
Matches are distributed among these distances:
157 15 0.02
158 60 0.10
159 158 0.25
160 121 0.20
161 58 0.09
162 64 0.10
163 12 0.02
164 14 0.02
165 117 0.19
166 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (162 bp):
TTCACACATATCAAGCGTGGCAACCAAGTTCAACCATTCGAACAAGTTTAATATCATATATTGGA
GCTATCTAAACTGTTAAAATAGAAATATAACTACAAATTTATATTTTTAGCATTTGATCAGCACA
AAAAGTCTTAAAAACATATAAATCGTAATATT
Found at i:6857766 original size:52 final size:52
Alignment explanation
Indices: 6857704--6857808 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 52
6857694 TTGAAAGAAC
* *
6857704 TCTAGTCAATGACCTTGATGGTATAGACTTTCCATGAAAATATCAATTAACG
1 TCTAGTCAATGACCTTGATGGTACAGACTTTCCATGAAAATACCAATTAACG
*
6857756 TCTAGTCAATGACCTTGATGGTGCAGACTTTCCATGAAAATACCAATTAACG
1 TCTAGTCAATGACCTTGATGGTACAGACTTTCCATGAAAATACCAATTAACG
6857808 T
1 T
6857809 GTCTCGATAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (52 bp):
TCTAGTCAATGACCTTGATGGTACAGACTTTCCATGAAAATACCAATTAACG
Found at i:6859591 original size:16 final size:17
Alignment explanation
Indices: 6859572--6859605 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
6859562 TGAAAAATTC
*
6859572 ATAATAAAA-AAATTTT
1 ATAAAAAAATAAATTTT
6859588 ATAAAAAAATAAATTTT
1 ATAAAAAAATAAATTTT
6859605 A
1 A
6859606 ATCCTACCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAAAAAAATAAATTTT
Found at i:6863040 original size:18 final size:17
Alignment explanation
Indices: 6863017--6863069 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
6863007 TTTTATTGTG
6863017 ATTATTTTTGTTGTTATT
1 ATTATTTTTGTT-TTATT
6863035 ATTATTTTTAG-TTTATT
1 ATTATTTTT-GTTTTATT
*
6863052 ATTATTTCT-TTTTATT
1 ATTATTTTTGTTTTATT
6863068 AT
1 AT
6863070 ATTATTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 8 0.25
17 13 0.41
18 10 0.31
19 1 0.03
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.72
Consensus pattern (17 bp):
ATTATTTTTGTTTTATT
Found at i:6863044 original size:33 final size:32
Alignment explanation
Indices: 6863001--6863077 Score: 79
Period size: 33 Copynumber: 2.4 Consensus size: 32
6862991 TAATTAATAA
*
6863001 ATTA-ATTTTTA-TTGTGATTATT-TTTGTTGTT
1 ATTATATTTTTAGTT-T-ATTATTATTTCTTGTT
*
6863032 ATTATTATTTTTAGTTTATTATTATTTCTTTTT
1 ATTA-TATTTTTAGTTTATTATTATTTCTTGTT
6863065 ATTATATTATTTA
1 ATTATATT-TTTA
6863078 AAATTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
31 4 0.10
32 10 0.26
33 23 0.59
34 2 0.05
ACGTcount: A:0.23, C:0.01, G:0.06, T:0.69
Consensus pattern (32 bp):
ATTATATTTTTAGTTTATTATTATTTCTTGTT
Done.