Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 31 of 131
Found at i:7248820 original size:18 final size:17
Alignment explanation
Indices: 7248799--7248832 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7248789 TTATAAAATA
7248799 AATTATTAATATATTTAT
1 AATTATTAAT-TATTTAT
*
7248817 AATTATTTATTATTTA
1 AATTATTAATTATTTA
7248833 GATCTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
AATTATTAATTATTTAT
Found at i:7248849 original size:19 final size:19
Alignment explanation
Indices: 7248802--7248850 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 19
7248792 TAAAATAAAT
7248802 TATTAATATATTTATAATTA
1 TATT-ATATATTTATAATTA
*
7248822 T-TTAT-TATTTA-GATCTA
1 TATTATATATTTATAAT-TA
7248839 TATTATATATTT
1 TATTATATATTT
7248851 TATTTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 2 0.08
17 9 0.36
18 6 0.24
19 7 0.28
20 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (19 bp):
TATTATATATTTATAATTA
Found at i:7248909 original size:15 final size:14
Alignment explanation
Indices: 7248889--7248941 Score: 60
Period size: 15 Copynumber: 4.0 Consensus size: 14
7248879 TCTATTCTAT
*
7248889 TTAGTATTATATATA
1 TTAGTATAATAT-TA
7248904 TTAGTATAATATTA
1 TTAGTATAATATTA
7248918 -T--TATAATA-TA
1 TTAGTATAATATTA
7248928 TTAGTATAATATTA
1 TTAGTATAATATTA
7248942 CTATATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
10 2 0.06
11 8 0.24
13 8 0.24
14 4 0.12
15 11 0.33
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (14 bp):
TTAGTATAATATTA
Found at i:7248928 original size:13 final size:12
Alignment explanation
Indices: 7248896--7248947 Score: 63
Period size: 11 Copynumber: 4.4 Consensus size: 12
7248886 TATTTAGTAT
7248896 TATATATATTAG
1 TATATATATTAG
*
7248908 TATA-ATATTAT
1 TATATATATTAG
7248919 TATAATATATTAG
1 TAT-ATATATTAG
*
7248932 TATA-ATATTAC
1 TATATATATTAG
7248943 TATAT
1 TATAT
7248948 TTTTATTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
11 19 0.56
12 6 0.18
13 9 0.26
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (12 bp):
TATATATATTAG
Found at i:7248929 original size:24 final size:24
Alignment explanation
Indices: 7248893--7248946 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
7248883 TTCTATTTAG
7248893 TATTAT-ATATATTAGTATAATAT
1 TATTATAATATATTAGTATAATAT
7248916 TATTATAATATATTAGTATAATAT
1 TATTATAATATATTAGTATAATAT
*
7248940 TACTATA
1 TATTATA
7248947 TTTTTATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 6 0.21
24 23 0.79
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (24 bp):
TATTATAATATATTAGTATAATAT
Found at i:7249065 original size:11 final size:11
Alignment explanation
Indices: 7249049--7249089 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
7249039 AATTTAATAG
7249049 ATAGATTTAAT
1 ATAGATTTAAT
*
7249060 ATAGA--T-AG
1 ATAGATTTAAT
7249068 ATAGATTTAAT
1 ATAGATTTAAT
7249079 ATAGATTTAAT
1 ATAGATTTAAT
7249090 TTATTTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
8 6 0.24
9 1 0.04
10 1 0.04
11 17 0.68
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.41
Consensus pattern (11 bp):
ATAGATTTAAT
Found at i:7249069 original size:19 final size:19
Alignment explanation
Indices: 7249023--7249084 Score: 94
Period size: 19 Copynumber: 3.4 Consensus size: 19
7249013 TAATTTTTTT
7249023 ATATAGAT--ATAGATTTA
1 ATATAGATAGATAGATTTA
*
7249040 ATTTA-ATAGATAGATTTA
1 ATATAGATAGATAGATTTA
7249058 ATATAGATAGATAGATTTA
1 ATATAGATAGATAGATTTA
7249077 ATATAGAT
1 ATATAGAT
7249085 TTAATTTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.05
17 4 0.10
18 13 0.32
19 21 0.52
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (19 bp):
ATATAGATAGATAGATTTA
Found at i:7251485 original size:27 final size:28
Alignment explanation
Indices: 7251455--7251512 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
7251445 ATTAAACTTA
7251455 TATATAATTATTAT-TAAAATTTTAAAT
1 TATATAATTATTATATAAAATTTTAAAT
* * * *
7251482 TATATTATTTTTATATCATATTTTAAAT
1 TATATAATTATTATATAAAATTTTAAAT
7251510 TAT
1 TAT
7251513 CAAATCTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 12 0.46
28 14 0.54
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (28 bp):
TATATAATTATTATATAAAATTTTAAAT
Found at i:7251488 original size:24 final size:24
Alignment explanation
Indices: 7251423--7251490 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 24
7251413 AATAAAAATA
7251423 TAAAA-TATAAAATTTATATT-TTAT
1 TAAAATTAT-AAA-TTATATTATTAT
* *
7251447 TAAACTTATATA-TA-ATTATTAT
1 TAAAATTATAAATTATATTATTAT
*
7251469 TAAAATTTTAAATTATATTATT
1 TAAAATTATAAATTATATTATT
7251491 TTTATATCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
21 3 0.09
22 15 0.43
23 2 0.06
24 12 0.34
25 3 0.09
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (24 bp):
TAAAATTATAAATTATATTATTAT
Found at i:7251821 original size:19 final size:19
Alignment explanation
Indices: 7251786--7251833 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 19
7251776 TTAATTATTA
*
7251786 ATTATTTATTAATAAAATT
1 ATTATTTAATAATAAAATT
7251805 ATTATTTAAT-ATAAAA--
1 ATTATTTAATAATAAAATT
*
7251821 ATAATTTAATAAT
1 ATTATTTAATAAT
7251834 TTATACTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 9 0.35
17 2 0.08
18 6 0.23
19 9 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTATTTAATAATAAAATT
Found at i:7252003 original size:21 final size:21
Alignment explanation
Indices: 7251972--7252030 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
7251962 ATATTTTATT
*
7251972 ATTATTATTATTTTTATAATA
1 ATTAATATTATTTTTATAATA
* **
7251993 TTTAATATTATTACTATAATA
1 ATTAATATTATTTTTATAATA
* *
7252014 ATTAATTTTATATTTAT
1 ATTAATATTATTTTTAT
7252031 CACTATTTTT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTAATATTATTTTTATAATA
Found at i:7254338 original size:18 final size:18
Alignment explanation
Indices: 7254315--7254351 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
7254305 GGGTAAAAGG
7254315 AGCTATGAATAGTATATT
1 AGCTATGAATAGTATATT
*
7254333 AGCTATGAATGGTATATT
1 AGCTATGAATAGTATATT
7254351 A
1 A
7254352 TGATTTCGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (18 bp):
AGCTATGAATAGTATATT
Found at i:7254711 original size:98 final size:98
Alignment explanation
Indices: 7254606--7254793 Score: 342
Period size: 98 Copynumber: 1.9 Consensus size: 98
7254596 TTTTTTAATT
7254606 TTTTTTATTTAAATAAATATCATTATTTCATGAATAACAAATAGAGATCCATAA-TTTTTGAAAA
1 TTTTTTATTTAAATAAATATCATTATTTCATGAATAACAAATAGAGATCCA-AAGTTTTTGAAAA
*
7254670 CCGTTATTTATATATGTCTGTTAAATAAAAAAAG
65 CCGTTATTTATATATGTATGTTAAATAAAAAAAG
*
7254704 TTTTTTATTTAAATAGATATCATTATTTCATGAATAACAAATAGAGATCCAAAGTTTTTGAAAAC
1 TTTTTTATTTAAATAAATATCATTATTTCATGAATAACAAATAGAGATCCAAAGTTTTTGAAAAC
7254769 CGTTATTTATATATGTATGTTAAAT
66 CGTTATTTATATATGTATGTTAAAT
7254794 TTTTTTAATC
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
97 2 0.02
98 85 0.98
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (98 bp):
TTTTTTATTTAAATAAATATCATTATTTCATGAATAACAAATAGAGATCCAAAGTTTTTGAAAAC
CGTTATTTATATATGTATGTTAAATAAAAAAAG
Found at i:7256015 original size:34 final size:34
Alignment explanation
Indices: 7255971--7256050 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 34
7255961 TCAGATATTT
* * * *
7255971 ATTTTGGAAAAGACTCAAAGGTTATTGAATATCC
1 ATTTTTGAAAAGACTCAAAAGCTATCGAATATCC
* * *
7256005 ATTTTTGAAAAGATTCAAAAGCTCTCGAATATTC
1 ATTTTTGAAAAGACTCAAAAGCTATCGAATATCC
7256039 ATTTTTGAAAAG
1 ATTTTTGAAAAG
7256051 TCTTGAGTCT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (34 bp):
ATTTTTGAAAAGACTCAAAAGCTATCGAATATCC
Found at i:7268082 original size:40 final size:39
Alignment explanation
Indices: 7267993--7268082 Score: 119
Period size: 39 Copynumber: 2.3 Consensus size: 39
7267983 TAAAGGAACC
*
7267993 ATTTAAAGTTTTATTGCCTCTAGTTAGAGAAGCTTTTGA
1 ATTTAAAGTTTTATTGCCTCTAGTTAGAAAAGCTTTTGA
* * *
7268032 ATTTAAAGTTTTGTTGTCTTTAGTTAGAAAAGCCCTTTT-A
1 ATTTAAAGTTTTATTGCCTCTAGTTAGAAAAG--CTTTTGA
7268072 ATTTAAAGTTT
1 ATTTAAAGTTT
7268083 CATTACCTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
39 28 0.62
40 12 0.27
41 5 0.11
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.47
Consensus pattern (39 bp):
ATTTAAAGTTTTATTGCCTCTAGTTAGAAAAGCTTTTGA
Found at i:7268109 original size:113 final size:114
Alignment explanation
Indices: 7267953--7268459 Score: 403
Period size: 113 Copynumber: 4.4 Consensus size: 114
7267943 CCTTTCAAAT
* * * * * * *
7267953 TTTTAAATTCAAAGTTTCATTGCCTTTAGTTAAAGGAACCATTTAAAGTTTTATTGCCTCTAGTT
1 TTTT-AATTTAAAGTTTCATTGCCTTTGGTCAAAGGAGCCATTTAAAGTTTTGTTGCCTCTGGTC
* *
7268018 AGA-GAAG-CTTTTGAATTTAAAGTTTTGTTGTCTTTAGTTAGAAAAGCCC
65 AGATGAAGCCTTTTGAATTTAAAGTTTTGTTGTCTTTGGTCAGAAAAG-CC
*
7268067 TTTTAATTTAAAGTTTCATTACCTTTGGTCAAAGGAGCCATTTAAAGTTTTGTTG-C-CTGGTCA
1 TTTTAATTTAAAGTTTCATTGCCTTTGGTCAAAGGAGCCATTTAAAGTTTTGTTGCCTCTGGTCA
* ** * *
7268130 GATG-AGCCTTTTTAATTTAAAGTTTCATT-ACTTTTGGTCACCAGAAA-CC
66 GATGAAGCCTTTTGAATTTAAAGTTTTGTTGTC-TTTGGTCA-GA-AAAGCC
* * * *
7268179 TTTTAAATTAAAGGCTTT-ATTGCCTTTGGTCAAAAGAGCCAATTTAAAG-TTCGTTGCATCTGG
1 TTTTAATTTAAA-G-TTTCATTGCCTTTGGTCAAAGGAGCC-ATTTAAAGTTTTGTTGCCTCTGG
* *** ** * **
7268242 TTAGAT-AAATTTTTTGAATTTAGTGTTTTGTTATCCTTTGGTCAGAGGAGCC
63 TCAGATGAAGCCTTTTGAATTTAAAGTTTTGTTGT-CTTTGGTCAGAAAAGCC
* *
7268294 TTTTTTTAA-TTAAAGTTTCAATTGCCATTTGGTCAAAGAAGCCATTTAAAGTTTTGTTACCT-T
1 ---TTTTAATTTAAAGTTTC-ATTGCC-TTTGGTCAAAGGAGCCATTTAAAGTTTTGTTGCCTCT
* * * * * **
7268357 GGTCAGA-GGAGCCTTCTGAATTTAAAGTTTT-ATGCCTTTGGTTAGATGAGCC
61 GGTCAGATGAAGCCTTTTGAATTTAAAGTTTTGTTGTCTTTGGTCAGAAAAGCC
* * * **
7268409 TTTTAAATTTAAAGTTTCATTACCCTTGCTCAAATTAGCCATTTAAAGTTT
1 TTTT-AATTTAAAGTTTCATTGCCTTTGGTCAAAGGAGCCATTTAAAGTTT
7268460 CATAACCTTT
Statistics
Matches: 313, Mismatches: 56, Indels: 50
0.75 0.13 0.12
Matches are distributed among these distances:
111 10 0.03
112 67 0.21
113 80 0.26
114 29 0.09
115 47 0.15
116 10 0.03
117 43 0.14
118 27 0.09
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (114 bp):
TTTTAATTTAAAGTTTCATTGCCTTTGGTCAAAGGAGCCATTTAAAGTTTTGTTGCCTCTGGTCA
GATGAAGCCTTTTGAATTTAAAGTTTTGTTGTCTTTGGTCAGAAAAGCC
Found at i:7268398 original size:39 final size:39
Alignment explanation
Indices: 7268337--7268425 Score: 108
Period size: 39 Copynumber: 2.3 Consensus size: 39
7268327 CAAAGAAGCC
* *
7268337 ATTTAAAGTTTTGTTACCTTGGTCAGAGGAGCCTTCTGA
1 ATTTAAAGTTTTGATACCTTGGTCAGAGGAGCCTTCTAA
* * * *
7268376 ATTTAAAGTTTT-ATGCCTTTGGTTAGATGAGCCTTTTAA
1 ATTTAAAGTTTTGATACC-TTGGTCAGAGGAGCCTTCTAA
7268415 ATTTAAAGTTT
1 ATTTAAAGTTT
7268426 CATTACCCTT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 3 0.07
39 40 0.93
ACGTcount: A:0.26, C:0.11, G:0.19, T:0.44
Consensus pattern (39 bp):
ATTTAAAGTTTTGATACCTTGGTCAGAGGAGCCTTCTAA
Found at i:7268468 original size:112 final size:114
Alignment explanation
Indices: 7268272--7268476 Score: 256
Period size: 112 Copynumber: 1.8 Consensus size: 114
7268262 TAGTGTTTTG
* * * *
7268272 TTATCCTTTGGTCAGAGGAGCCTTTTTTTAATTAAAGTTTCAATTGCCATTTGGTCAAAGAAGCC
1 TTATCCTTTGGTCAGAGGAGCC-TTTTTAAATTAAAGTTTCAATTACCACTTGCTCAAAGAAGCC
** *
7268337 ATTTAAAGTTTTGTTACC-TTGGTCAGAGGAGCCTTCTGAATTTAAAGTT
65 ATTTAAAGTTTCATAACCTTTGGTCAGAGGAGCCTTCTGAATTTAAAGTT
* * **
7268386 TTATGCCTTTGGTTAGATGAGCC-TTTTAAATTTAAAGTTTC-ATTACC-CTTGCTCAAATTAGC
1 TTAT-CCTTTGGTCAGAGGAGCCTTTTTAAA-TTAAAGTTTCAATTACCACTTGCTCAAAGAAGC
7268448 CATTTAAAGTTTCATAACCTTTGGTCAGA
64 CATTTAAAGTTTCATAACCTTTGGTCAGA
7268477 AGAACTTTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
112 27 0.35
113 20 0.26
114 14 0.18
115 16 0.21
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (114 bp):
TTATCCTTTGGTCAGAGGAGCCTTTTTAAATTAAAGTTTCAATTACCACTTGCTCAAAGAAGCCA
TTTAAAGTTTCATAACCTTTGGTCAGAGGAGCCTTCTGAATTTAAAGTT
Found at i:7268752 original size:81 final size:80
Alignment explanation
Indices: 7268634--7268785 Score: 207
Period size: 81 Copynumber: 1.9 Consensus size: 80
7268624 TCGTTGCCTC
** * * * *
7268634 TGGTTAGATGAGCTTTTTGAATTTAAAGTTTCATTGCCTCTGGTTAG-AGAAGCCTTTTAACATT
1 TGGTTAGAAAAGCCTTTTAAATTTAAAATTTCATTGCCTCTGGTCAGAAG-AGCCTTTTAA-ATT
7268698 TAAAGTTTTATTACTTT
64 TAAAGTTTTATTACTTT
* *
7268715 TGGTTAGAAAAGCCTTTTAAATTTAAAATTTCGTTGCCTTTGGTCAGAAGAGCCTTTTAAATTTA
1 TGGTTAGAAAAGCCTTTTAAATTTAAAATTTCATTGCCTCTGGTCAGAAGAGCCTTTTAAATTTA
7268780 AAGTTT
66 AAGTTT
7268786 CATTGCCTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 11 0.18
81 49 0.79
82 2 0.03
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.43
Consensus pattern (80 bp):
TGGTTAGAAAAGCCTTTTAAATTTAAAATTTCATTGCCTCTGGTCAGAAGAGCCTTTTAAATTTA
AAGTTTTATTACTTT
Found at i:7268800 original size:40 final size:40
Alignment explanation
Indices: 7268614--7268798 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
7268604 CAGAGAAGCC
* * * * *
7268614 ATTTAAAGTTTCGTTGCCTCTGGTTAGATGAGCTTTTTGA
1 ATTTAAAGTTTCATTGCCTTTGGTTAGAAGAGCCTTTTAA
*
7268654 ATTTAAAGTTTCATTGCCTCTGGTTAG-AGAAGCCTTTTAA
1 ATTTAAAGTTTCATTGCCTTTGGTTAGAAG-AGCCTTTTAA
* * * *
7268694 CATTTAAAGTTTTATTACTTTTGGTTAGAAAAGCCTTTTAA
1 -ATTTAAAGTTTCATTGCCTTTGGTTAGAAGAGCCTTTTAA
* * *
7268735 ATTTAAAATTTCGTTGCCTTTGGTCAGAAGAGCCTTTTAA
1 ATTTAAAGTTTCATTGCCTTTGGTTAGAAGAGCCTTTTAA
7268775 ATTTAAAGTTTCATTGCCTTTGGT
1 ATTTAAAGTTTCATTGCCTTTGGT
7268799 CAAATGGGCC
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 89 0.72
41 33 0.27
42 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (40 bp):
ATTTAAAGTTTCATTGCCTTTGGTTAGAAGAGCCTTTTAA
Found at i:7268883 original size:360 final size:359
Alignment explanation
Indices: 7268336--7269159 Score: 1158
Period size: 360 Copynumber: 2.3 Consensus size: 359
7268326 TCAAAGAAGC
* * * * *
7268336 CATTTAAAGTTTTGTTAC-CTTGGTCAGAGGAGCCTTCTGAATTTAAAGTTT-TATGCCTTTGGT
1 CATTTAAAGTTTTATTACTTTTGGTTAGAAGAGCCTTTTGAATTTAAAGTTTCT-TGCCTTTGGT
* * * * *
7268399 TAGATGAGCCTTTTAAATTTAAAGTTTCATTACCCTTGCTCAAATTAGCCATTTAAAGTTTCATA
65 TAGAAGAGCCTTTTAAATTTAAAGTTTCATTGCCTTTGGTCAAATGAGCCATTTAAAGTTTCATA
7268464 ACCTTTGGTCAGAAGAACTTTTTAATTTTAAAAGCCTCTGGTCAGATAACACCATCAAAATT-AG
130 ACCTTTGGTCAGAAGAACTTTTTAATTTTAAAAGCCTCTGGTCAGATAACACCATCAAAATTAAG
***
7268528 ACATGATTTGTAAGATTGAAGGGCATAATCTATAAGT-CTTCCTAGATTTTTAATTTAAAATTTT
195 -CATGATTTGTAAGACCAAAGGGCATAATCTATAAGTCCTTCC-AGATTTTTAATTTAAAATTTT
* * *
7268592 GTTACCTCTGGTCAGAGAAGCCATTTAAAGTTTCGTTGCCTCTGGTTAGATGAGCTTTTTGAATT
258 GTTACCTCTGGTCAGAGAAGCCATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTGAATT
* *
7268657 TAAAGTTTCATTGCCTCTGGTTAGA-GAAGCCTTTTAA
323 AAAAGTATCATTGCCTCTGGTTAGAGGAA-CCTTTTAA
* * *
7268694 CATTTAAAGTTTTATTACTTTTGGTTAGAAAAGCCTTTTAAATTTAAAATTTCGTTGCCTTTGGT
1 CATTTAAAGTTTTATTACTTTTGGTTAGAAGAGCCTTTTGAATTTAAAGTTTC-TTGCCTTTGGT
* *
7268759 CAGAAGAGCCTTTTAAATTTAAAGTTTCATTGCCTTTGGTCAAATGGGCCATTTAAAGTTTCATA
65 TAGAAGAGCCTTTTAAATTTAAAGTTTCATTGCCTTTGGTCAAATGAGCCATTTAAAGTTTCATA
* * * * ***
7268824 ACCTTTGGTCATAAGAGCTTTTTAATTTTAAAAGCCTCTGGTTAGATGACTTTATCAAAATTAAG
130 ACCTTTGGTCAGAAGAACTTTTTAATTTTAAAAGCCTCTGGTCAGATAACACCATCAAAATTAAG
* *
7268889 CATGATTTGTAAGACCAAAGGGCATAATCTATAAGTCCTTTCAGATTTTTAATTTAAAGTTTTGT
195 CATGATTTGTAAGACCAAAGGGCATAATCTATAAGTCCTTCCAGATTTTTAATTTAAAATTTTGT
* * *
7268954 TATCTTTGGTCAGAGGAGCCATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTGAATTAA
260 TACCTCTGGTCAGAGAAGCCATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTGAATTAA
*
7269019 AAGTATCATTGCCTCTGGTTAGAGGCACCTTTTAA
325 AAGTATCATTGCCTCTGGTTAGAGGAACCTTTTAA
* * * *
7269054 CATTTAAAGTTTCATTA-TCTCTGGTTAGATGAGCCTTTTGAATTTAAAGTTTCATTGCCTTTAG
1 CATTTAAAGTTTTATTACT-TTTGGTTAGAAGAGCCTTTTGAATTTAAAGTTTC-TTGCCTTTGG
7269118 TTA-AAGGAGCCTTTTAACATTTAAAGTTTCATTGCCTTTGGT
64 TTAGAA-GAGCCTTTTAA-ATTTAAAGTTTCATTGCCTTTGGT
7269160 TCGAGGAGAC
Statistics
Matches: 412, Mismatches: 45, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
358 17 0.04
359 29 0.07
360 333 0.81
361 33 0.08
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.40
Consensus pattern (359 bp):
CATTTAAAGTTTTATTACTTTTGGTTAGAAGAGCCTTTTGAATTTAAAGTTTCTTGCCTTTGGTT
AGAAGAGCCTTTTAAATTTAAAGTTTCATTGCCTTTGGTCAAATGAGCCATTTAAAGTTTCATAA
CCTTTGGTCAGAAGAACTTTTTAATTTTAAAAGCCTCTGGTCAGATAACACCATCAAAATTAAGC
ATGATTTGTAAGACCAAAGGGCATAATCTATAAGTCCTTCCAGATTTTTAATTTAAAATTTTGTT
ACCTCTGGTCAGAGAAGCCATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTGAATTAAA
AGTATCATTGCCTCTGGTTAGAGGAACCTTTTAA
Found at i:7269007 original size:34 final size:34
Alignment explanation
Indices: 7268940--7269007 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
7268930 CAGATTTTTA
** * *
7268940 ATTTAAAGTTTTGTTATCTTTGGTCAGAGGAGCC
1 ATTTAAAGTTTCATTACCTCTGGTCAGAGGAGCC
* *
7268974 ATTTAAAGTTTCATTACCTCTGGTTAGATGAGCC
1 ATTTAAAGTTTCATTACCTCTGGTCAGAGGAGCC
7269008 TTTTGAATTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (34 bp):
ATTTAAAGTTTCATTACCTCTGGTCAGAGGAGCC
Found at i:7269034 original size:40 final size:40
Alignment explanation
Indices: 7268974--7269372 Score: 417
Period size: 40 Copynumber: 9.9 Consensus size: 40
7268964 CAGAGGAGCC
* * *
7268974 ATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTGA
1 ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTAA
* *
7269014 ATTAAAAGTATCATTGCCTCTGGTTAGAGGCA-CCTTTTAA
1 ATTTAAAGTTTCATTGCCTCTGGTTAGAGG-AGCCTTTTAA
** * *
7269054 CATTTAAAGTTTCATTATCTCTGGTTAGATGAGCCTTTTGA
1 -ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTAA
* * *
7269095 ATTTAAAGTTTCATTGCCTTTAGTTAAAGGAGCCTTTTAA
1 ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTAA
* * *
7269135 CATTTAAAGTTTCATTGCCTTTGGTTCGAGGAGACTTTTAA
1 -ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTAA
** * *
7269176 ATTTAAAGTTTTGTTACCTCTGGTTAGAGGAGCCTTTTGA
1 ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTAA
** * * * * *
7269216 ATTTAAAGTTTCATCACTTTTGGTTAAAAGAGTCTTTTAA
1 ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTAA
* * * *
7269256 CA-TTAAAGTTTCATTGCCTCTAGTTAAAAGAG-CTTTCTGA
1 -ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTT-TAA
** *
7269296 ATTTAAAGTTTTGTTGCCTCTGGTTAGATGAGCCTTTTAA
1 ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTAA
*
7269336 CATTTAAAGTTTCATTGCCTCTAGTTAGAGGAGCCTT
1 -ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTT
7269373 CTGAATTTCA
Statistics
Matches: 296, Mismatches: 54, Indels: 17
0.81 0.15 0.05
Matches are distributed among these distances:
39 5 0.02
40 185 0.62
41 106 0.36
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.41
Consensus pattern (40 bp):
ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTAA
Found at i:7269180 original size:121 final size:120
Alignment explanation
Indices: 7268974--7269372 Score: 478
Period size: 121 Copynumber: 3.3 Consensus size: 120
7268964 CAGAGGAGCC
* * * * * *
7268974 ATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTGA-ATTAAAAGTATCATTGCCTCTGGT
1 ATTTAAAGTTTCATTACCTCTAGTTAAAGGAGCCTTTTAACATTTAAAGTTTCATTGCCTCTGGT
* ** *
7269038 TAGAGGCACCTTTTAACATTTAAAGTTTCATTATCTCTGGTTAGATGAGCCTTTTGA
66 TAGAGG-AGCTTTTAA-ATTTAAAGTTTTGTTACCTCTGGTTAGATGAGCCTTTTGA
* * *
7269095 ATTTAAAGTTTCATTGCCTTTAGTTAAAGGAGCCTTTTAACATTTAAAGTTTCATTGCCTTTGGT
1 ATTTAAAGTTTCATTACCTCTAGTTAAAGGAGCCTTTTAACATTTAAAGTTTCATTGCCTCTGGT
* *
7269160 TCGAGGAGACTTTTAAATTTAAAGTTTTGTTACCTCTGGTTAGAGGAGCCTTTTGA
66 TAGAGGAG-CTTTTAAATTTAAAGTTTTGTTACCTCTGGTTAGATGAGCCTTTTGA
* * * * * * *
7269216 ATTTAAAGTTTCATCACTTTTGGTTAAAAGAGTCTTTTAACA-TTAAAGTTTCATTGCCTCTAGT
1 ATTTAAAGTTTCATTACCTCTAGTTAAAGGAGCCTTTTAACATTTAAAGTTTCATTGCCTCTGGT
* * * * *
7269280 TAAAAGAGCTTTCTGAATTTAAAGTTTTGTTGCCTCTGGTTAGATGAGCCTTTTAA
66 TAGAGGAGCTTT-TAAATTTAAAGTTTTGTTACCTCTGGTTAGATGAGCCTTTTGA
* *
7269336 CATTTAAAGTTTCATTGCCTCTAGTTAGAGGAGCCTT
1 -ATTTAAAGTTTCATTACCTCTAGTTAAAGGAGCCTT
7269373 CTGAATTTCA
Statistics
Matches: 236, Mismatches: 38, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
119 4 0.02
120 64 0.27
121 135 0.57
122 33 0.14
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.41
Consensus pattern (120 bp):
ATTTAAAGTTTCATTACCTCTAGTTAAAGGAGCCTTTTAACATTTAAAGTTTCATTGCCTCTGGT
TAGAGGAGCTTTTAAATTTAAAGTTTTGTTACCTCTGGTTAGATGAGCCTTTTGA
Found at i:7269377 original size:81 final size:80
Alignment explanation
Indices: 7268974--7269380 Score: 460
Period size: 81 Copynumber: 5.0 Consensus size: 80
7268964 CAGAGGAGCC
* * * *
7268974 ATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTGAATTAAAAGTATCATTGCCTCTGGTT
1 ATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTAAATTTAAAGTTTCATTGCCTCTAGTT
*
7269039 AGAGGCA-CCTTTTAA
66 AGAGG-AGCCTTTTGA
* * *
7269054 CATTTAAAGTTTCATTATCTCTGGTTAGATGAGCCTTTTGAATTTAAAGTTTCATTGCCTTTAGT
1 -ATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTAAATTTAAAGTTTCATTGCCTCTAGT
* *
7269119 TAAAGGAGCCTTTTAA
65 TAGAGGAGCCTTTTGA
* * * * * ** * *
7269135 CATTTAAAGTTTCATTGCCTTTGGTTCGAGGAGACTTTTAAATTTAAAGTTTTGTTACCTCTGGT
1 -ATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTAAATTTAAAGTTTCATTGCCTCTAGT
7269200 TAGAGGAGCCTTTTGA
65 TAGAGGAGCCTTTTGA
* * * * * *
7269216 ATTTAAAGTTTCATCACTTTTGGTTAAAAGAGTCTTTTAACA-TTAAAGTTTCATTGCCTCTAGT
1 ATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTAA-ATTTAAAGTTTCATTGCCTCTAGT
* *
7269280 TAAAAGAG-CTTTCTGA
65 TAGAGGAGCCTTT-TGA
** *
7269296 ATTTAAAGTTTTGTTGCCTCTGGTTAGATGAGCCTTTTAACATTTAAAGTTTCATTGCCTCTAGT
1 ATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTAA-ATTTAAAGTTTCATTGCCTCTAGT
*
7269361 TAGAGGAGCCTTCTGA
65 TAGAGGAGCCTTTTGA
7269377 ATTT
1 ATTT
7269381 CACGTCGTTG
Statistics
Matches: 276, Mismatches: 45, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
79 4 0.01
80 94 0.34
81 175 0.63
82 3 0.01
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (80 bp):
ATTTAAAGTTTCATTACCTCTGGTTAGATGAGCCTTTTAAATTTAAAGTTTCATTGCCTCTAGTT
AGAGGAGCCTTTTGA
Found at i:7272339 original size:18 final size:18
Alignment explanation
Indices: 7272312--7272438 Score: 93
Period size: 18 Copynumber: 7.1 Consensus size: 18
7272302 CCTTTGTTCT
7272312 TGATACATTTGAGGTGGA
1 TGATACATTTGAGGTGGA
* * *
7272330 GGATATATTT-A--AGGA
1 TGATACATTTGAGGTGGA
7272345 TGATACATTT-ATGGTGGA
1 TGATACATTTGA-GGTGGA
* * * *
7272363 GGGTACATTTGTGGT-AA
1 TGATACATTTGAGGTGGA
7272380 CTGATACATTTGAGGTGGA
1 -TGATACATTTGAGGTGGA
* *
7272399 AGATATATTTGAGGAGGTGGA
1 TGATACATTT---GAGGTGGA
7272420 TGATACATTTGAGGTGGA
1 TGATACATTTGAGGTGGA
7272438 T
1 T
7272439 AATAACCATA
Statistics
Matches: 82, Mismatches: 18, Indels: 18
0.69 0.15 0.15
Matches are distributed among these distances:
15 12 0.15
17 2 0.02
18 51 0.62
19 1 0.01
21 16 0.20
ACGTcount: A:0.29, C:0.05, G:0.32, T:0.34
Consensus pattern (18 bp):
TGATACATTTGAGGTGGA
Found at i:7272415 original size:21 final size:21
Alignment explanation
Indices: 7272391--7272433 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7272381 TGATACATTT
*
7272391 GAGGTGGAAGATATATTTGAG
1 GAGGTGGAAGATACATTTGAG
*
7272412 GAGGTGGATGATACATTTGAG
1 GAGGTGGAAGATACATTTGAG
7272433 G
1 G
7272434 TGGATAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.02, G:0.40, T:0.28
Consensus pattern (21 bp):
GAGGTGGAAGATACATTTGAG
Found at i:7272796 original size:14 final size:15
Alignment explanation
Indices: 7272777--7272805 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7272767 CACCAAAATT
7272777 CATCACCA-TCCATC
1 CATCACCATTCCATC
7272791 CATCACCATTCCATC
1 CATCACCATTCCATC
7272806 ACCATCATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.28, C:0.48, G:0.00, T:0.24
Consensus pattern (15 bp):
CATCACCATTCCATC
Found at i:7276281 original size:26 final size:26
Alignment explanation
Indices: 7276232--7276280 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
7276222 TTTCAAAACT
*
7276232 TAAAAGTTTTCAAACTTATATTTTAA
1 TAAAAGTTTTCAAACCTATATTTTAA
7276258 TAAAA-TTTTCAAACCTATATTTT
1 TAAAAGTTTTCAAACCTATATTTT
7276281 TTATTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (26 bp):
TAAAAGTTTTCAAACCTATATTTTAA
Found at i:7281075 original size:19 final size:18
Alignment explanation
Indices: 7281053--7281096 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
7281043 ATTTTATTAA
*
7281053 TATTTTTATCTTTTATTTT
1 TATTTTTATCTCTT-TTTT
*
7281072 TATTTTTTTCTCTTTTTT
1 TATTTTTATCTCTTTTTT
*
7281090 TGTTTTT
1 TATTTTT
7281097 TTTGTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.09, C:0.07, G:0.02, T:0.82
Consensus pattern (18 bp):
TATTTTTATCTCTTTTTT
Found at i:7281096 original size:9 final size:9
Alignment explanation
Indices: 7281074--7281107 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
7281064 TTTATTTTTA
*
7281074 TTTTTTTCT
1 TTTTTTTGT
7281083 CTTTTTTTGT
1 -TTTTTTTGT
7281093 TTTTTTTGT
1 TTTTTTTGT
7281102 TTTTTT
1 TTTTTT
7281108 AAATAATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.88
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:7281097 original size:19 final size:21
Alignment explanation
Indices: 7281055--7281099 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7281045 TTTATTAATA
*
7281055 TTTTTATCTTTTATTTTTATT
1 TTTTTATCTTTTATTTGTATT
*
7281076 TTTTTCTCTTTT-TTTGT-TT
1 TTTTTATCTTTTATTTGTATT
7281095 TTTTT
1 TTTTT
7281100 GTTTTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 7 0.32
20 4 0.18
21 11 0.50
ACGTcount: A:0.07, C:0.07, G:0.02, T:0.84
Consensus pattern (21 bp):
TTTTTATCTTTTATTTGTATT
Found at i:7282170 original size:3 final size:3
Alignment explanation
Indices: 7282162--7282197 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
7282152 TTCTTTTTAT
7282162 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7282198 CATTATCACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7282603 original size:43 final size:43
Alignment explanation
Indices: 7282535--7282917 Score: 340
Period size: 43 Copynumber: 8.8 Consensus size: 43
7282525 AATATAAAAA
* * *
7282535 CTCCTCTAAAATAGAGGCTCCACGACTTTGAAAAGTAAATAAAG
1 CTCCTCT-AAATAGAGGCTCAACAACTTTGAAAAGTAAATAAGG
* * *
7282579 CTCCTCTAAATAAAGGTTCAACGACTTCTGAAAAGT-AATAAGG
1 CTCCTCTAAATAGAGGCTCAACAACTT-TGAAAAGTAAATAAGG
* *
7282622 CTCATCTAAATAGATGCTCAACAACTTTTGGAAAAGTAAATAAGG
1 CTCCTCTAAATAGAGGCTCAACAAC-TTT-GAAAAGTAAATAAGG
* * *
7282667 CTCCTCTAAACAGAGGCTCAA-AACTTTAAAAAATAAATAAGG
1 CTCCTCTAAATAGAGGCTCAACAACTTTGAAAAGTAAATAAGG
* * * *
7282709 CTCATCTAATTAGAGGCTTCAACGATTTTGAAAAAGTAAATAAGG
1 CTCCTCTAAATAGAGGC-TCAACAACTTTG-AAAAGTAAATAAGG
* * * * * * *
7282754 CTCATTTAAGTAGAGGCTTAACAATTTTGAAAAATAAATAAAG
1 CTCCTCTAAATAGAGGCTCAACAACTTTGAAAAGTAAATAAGG
* * * * *
7282797 CTTCTCTAAGTAAAGGCTCAACAACTTTGAAAA-AATAATAAGA
1 CTCCTCTAAATAGAGGCTCAACAACTTTGAAAAGTA-AATAAGG
* * * * **
7282840 CTTCTCTAAGTAGAGGCTCAATAATTTTTGAAAAAAATAATAAGG
1 CTCCTCTAAATAGAGGCTCAACAA-CTTTGAAAAGTA-AATAAGG
* * *
7282885 CGCCTCTAAACAAAGGCTCAACAACTTTGAAAA
1 CTCCTCTAAATAGAGGCTCAACAACTTTGAAAA
7282918 ATTAATCACT
Statistics
Matches: 282, Mismatches: 47, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
42 28 0.10
43 117 0.41
44 57 0.20
45 80 0.28
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (43 bp):
CTCCTCTAAATAGAGGCTCAACAACTTTGAAAAGTAAATAAGG
Found at i:7282747 original size:87 final size:87
Alignment explanation
Indices: 7282543--7282918 Score: 366
Period size: 88 Copynumber: 4.3 Consensus size: 87
7282533 AACTCCTCTA
* * * * * *
7282543 AAATAGAGGCTCCACGACTTTG-AAAAGTAAATAAAGCTCCTCTAAATAAAGGTTCAACGACTTC
1 AAATAGAGGCTCAACAACTTTGAAAAAGTAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTT-
*
7282607 TGAAAAGT-AATAAGGCTCATCT
65 TGAAAAATAAATAAGGCTCATCT
* * *
7282629 AAATAGATGCTCAACAACTTTTGGAAAAGTAAATAAGGCTCCTCTAAACAGAGGCTCAA-AACTT
1 AAATAGAGGCTCAACAAC-TTTGAAAAAGTAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTT
*
7282693 TAAAAAATAAATAAGGCTCATCT
65 TGAAAAATAAATAAGGCTCATCT
* * * * * * * *
7282716 AATTAGAGGCTTCAACGATTTTGAAAAAGTAAATAAGGCTCATTTAAGTAGAGGCTTAACAATTT
1 AAATAGAGGC-TCAACAACTTTGAAAAAGTAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTT
*
7282781 TGAAAAATAAATAAAGCTTC-TCT
65 TGAAAAATAAATAAGGC-TCATCT
* * * * * * * *
7282804 AAGTAAAGGCTCAACAACTTTGAAAAAAT-AATAAGACTTCTCTAAGTAGAGGCTCAATAATTTT
1 AAATAGAGGCTCAACAACTTTGAAAAAGTAAATAAGGCTCCTCTAAATAGAGGCTCAACAA-CTT
* * *
7282868 TGAAAAAAATAATAAGGCGCCTCT
65 TGAAAAATA-AATAAGGCTCATCT
* *
7282892 AAACAAAGGCTCAACAACTTTGAAAAA
1 AAATAGAGGCTCAACAACTTTGAAAAA
7282919 TTAATCACTT
Statistics
Matches: 242, Mismatches: 39, Indels: 16
0.81 0.13 0.05
Matches are distributed among these distances:
86 46 0.19
87 92 0.38
88 102 0.42
89 2 0.01
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.26
Consensus pattern (87 bp):
AAATAGAGGCTCAACAACTTTGAAAAAGTAAATAAGGCTCCTCTAAATAGAGGCTCAACAACTTT
GAAAAATAAATAAGGCTCATCT
Found at i:7282914 original size:131 final size:129
Alignment explanation
Indices: 7282609--7282919 Score: 349
Period size: 131 Copynumber: 2.4 Consensus size: 129
7282599 ACGACTTCTG
* * *
7282609 AAAAGTAATAAGGCTCATCTAAATAGATGCTCAACAACTTTTGGAAAAGTAAATAAGGCTCCTCT
1 AAAAGTAATAAGGCTCATCTAAATAGAGGCTCAACAAC-TTT-GAAAAATAAATAAAGCTCCTCT
* * * *
7282674 AAACAGAGGCTCAAAACTTTAAAAAATAAATAAGGCTCATCTAATTAGAGGCTTCAACGATTTTG
64 AAACAAAGGCTCAAAACTTTAAAAAATAAATAAGACTCATCTAAGTAGAGGCTTCAACAATTTTG
7282739 A
129 A
* * * * *
7282740 AAAAGTAAATAAGGCTCATTTAAGTAGAGGCTTAACAATTTTGAAAAATAAATAAAGCTTCTCTA
1 AAAAGT-AATAAGGCTCATCTAAATAGAGGCTCAACAACTTTGAAAAATAAATAAAGCTCCTCTA
** *
7282805 AGTAAAGGCTCAACAACTTTGAAAAAAT-AATAAGACTTC-TCTAAGTAGAGGC-TCAATAATTT
65 AACAAAGGCTCAA-AACTTT-AAAAAATAAATAAGAC-TCATCTAAGTAGAGGCTTCAACAA-TT
7282867 TTGAA
126 TTG-A
* * * * *
7282872 AAAAATAATAAGGCGCCTCTAAACAAAGGCTCAACAACTTTGAAAAAT
1 AAAAGTAATAAGGCTCATCTAAATAGAGGCTCAACAACTTTGAAAAAT
7282920 TAATCACTTT
Statistics
Matches: 150, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
130 35 0.23
131 73 0.49
132 42 0.28
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26
Consensus pattern (129 bp):
AAAAGTAATAAGGCTCATCTAAATAGAGGCTCAACAACTTTGAAAAATAAATAAAGCTCCTCTAA
ACAAAGGCTCAAAACTTTAAAAAATAAATAAGACTCATCTAAGTAGAGGCTTCAACAATTTTGA
Found at i:7284599 original size:13 final size:13
Alignment explanation
Indices: 7284581--7284635 Score: 62
Period size: 13 Copynumber: 4.3 Consensus size: 13
7284571 TTTAAAAAAA
7284581 TTTTCATTTTCTT
1 TTTTCATTTTCTT
7284594 TTTTCA-TTTCTCT
1 TTTTCATTTTCT-T
*
7284607 TTCTCATTTTCTT
1 TTTTCATTTTCTT
7284620 TTTT--TTTTCCTT
1 TTTTCATTTT-CTT
7284632 TTTT
1 TTTT
7284636 TTCTTTATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
11 4 0.11
12 12 0.32
13 16 0.43
14 5 0.14
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTCATTTTCTT
Found at i:7284632 original size:12 final size:11
Alignment explanation
Indices: 7284613--7284655 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
7284603 CTCTTTCTCA
7284613 TTTTCTTTTTT
1 TTTTCTTTTTT
*
7284624 TTTTC-CTTTT
1 TTTTCTTTTTT
*
7284634 TTTTCTTTATT
1 TTTTCTTTTTT
*
7284645 TTTTATTTTTT
1 TTTTCTTTTTT
7284656 CATTTTTTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.05, C:0.09, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:7284648 original size:15 final size:15
Alignment explanation
Indices: 7284618--7284668 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
7284608 TCTCATTTTC
*
7284618 TTTT-TTTTTTCCTT
1 TTTTATTTTTTCATT
*
7284632 TTTT-TTCTTT-ATT
1 TTTTATTTTTTCATT
7284645 TTTTATTTTTTCATT
1 TTTTATTTTTTCATT
7284660 TTTTCATTT
1 TTTT-ATTT
7284669 CCTATTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 6 0.19
14 14 0.45
15 7 0.23
16 4 0.13
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTATTTTTTCATT
Found at i:7284654 original size:21 final size:21
Alignment explanation
Indices: 7284613--7284655 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
7284603 CTCTTTCTCA
* *
7284613 TTTTCTTTTTTTTTTCCTTTT
1 TTTTCTTTATTTTTTACTTTT
7284634 TTTTCTTTATTTTTTA-TTTT
1 TTTTCTTTATTTTTTACTTTT
7284654 TT
1 TT
7284656 CATTTTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.05, C:0.09, G:0.00, T:0.86
Consensus pattern (21 bp):
TTTTCTTTATTTTTTACTTTT
Found at i:7289092 original size:19 final size:20
Alignment explanation
Indices: 7289068--7289113 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
7289058 TTTTCTAAAA
7289068 TTTTATTAATA-TTTTTATC
1 TTTTATTAATATTTTTTATC
** *
7289087 TTTTATTTTTATTTTTTCTC
1 TTTTATTAATATTTTTTATC
7289107 TTTTATT
1 TTTTATT
7289114 TTTTTTGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTATTAATATTTTTTATC
Found at i:7289108 original size:20 final size:20
Alignment explanation
Indices: 7289079--7289116 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7289069 TTTATTAATA
7289079 TTTTTATCTTTTATTTTTAT
1 TTTTTATCTTTTATTTTTAT
*
7289099 TTTTTCTCTTTTATTTTT
1 TTTTTATCTTTTATTTTT
7289117 TTTGTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTATCTTTTATTTTTAT
Found at i:7289124 original size:14 final size:13
Alignment explanation
Indices: 7289077--7289117 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
7289067 ATTTTATTAA
*
7289077 TATTTTTATCTTT
1 TATTTTTATTTTT
7289090 TATTTTTATTTTT
1 TATTTTTATTTTT
*
7289103 TCTCTTTTATTTTT
1 TAT-TTTTATTTTT
7289117 T
1 T
7289118 TTGTTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (13 bp):
TATTTTTATTTTT
Found at i:7289260 original size:25 final size:25
Alignment explanation
Indices: 7289213--7289262 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
7289203 TTCTCACCTA
*
7289213 TGAAATTTTATAGAAATTTATCATT
1 TGAAATTTTATACAAATTTATCATT
7289238 TGAAATTTT-TACAAATTTCATCATT
1 TGAAATTTTATACAAATTT-ATCATT
7289263 GGATAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.48
Consensus pattern (25 bp):
TGAAATTTTATACAAATTTATCATT
Found at i:7290345 original size:8 final size:8
Alignment explanation
Indices: 7290332--7290357 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7290322 ATAATAAATG
7290332 AAATAATA
1 AAATAATA
7290340 AAATAATA
1 AAATAATA
7290348 AAATAATA
1 AAATAATA
7290356 AA
1 AA
7290358 TAAAATTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAATAATA
Found at i:7290886 original size:21 final size:21
Alignment explanation
Indices: 7290862--7290902 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7290852 ATGTAATATC
7290862 TTTAAAAATA-AAATAAATAAG
1 TTTAAAAATATAAA-AAATAAG
*
7290883 TTTAAAAGTATAAAAAATAA
1 TTTAAAAATATAAAAAATAA
7290903 TATTATCACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (21 bp):
TTTAAAAATATAAAAAATAAG
Found at i:7292571 original size:16 final size:16
Alignment explanation
Indices: 7292542--7292574 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7292532 AGTTTGGGAA
7292542 ATTTATTTACATGAAT
1 ATTTATTTACATGAAT
7292558 ATTT-TTTACTATGAAT
1 ATTTATTTAC-ATGAAT
7292574 A
1 A
7292575 AAGTAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (16 bp):
ATTTATTTACATGAAT
Found at i:7297749 original size:37 final size:37
Alignment explanation
Indices: 7297707--7297778 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 37
7297697 ACAAAATTAT
7297707 TTTATTTATATATTTA-TTAGTTTATTATATAATAAAA
1 TTTATTTATATATTTATTTA-TTTATTATATAATAAAA
*
7297744 TTTATTTATTTATTTATTTATTTATTATATAATAA
1 TTTATTTATATATTTATTTATTTATTATATAATAA
7297779 TAAAATTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
37 30 0.91
38 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (37 bp):
TTTATTTATATATTTATTTATTTATTATATAATAAAA
Found at i:7297752 original size:4 final size:4
Alignment explanation
Indices: 7297743--7297769 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7297733 ATATAATAAA
7297743 ATTT ATTT ATTT ATTT ATTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATT
7297770 ATATAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:7297806 original size:108 final size:104
Alignment explanation
Indices: 7297607--7297816 Score: 341
Period size: 108 Copynumber: 2.0 Consensus size: 104
7297597 AATAATTAAG
7297607 TTTATATATTTATTAGTTTATTATATAATAATAAAATTCATTTATTTATTAATTTATTATATAAT
1 TTTATATATTTATTAGTTTATTATATAATAATAAAATTCATTTATTTATTAATTTATTATATAAT
7297672 AAAATTTATCTATTATATTAAATTAACAAAATTATTTTA
66 AAAATTTATCTATTATATTAAATTAACAAAATTATTTTA
* * *
7297711 TTTATATATTTATTAGTTTATTATATAATAA-AATTTATTTATTTATTTATTTATTTATTATATA
1 TTTATATATTTATTAGTTTATTATATAATAATAA--AATTCATTTATTTATTAATTTA-T-TAT-
7297775 ATAATAAAATTTATCTATTATATTAAATTAACAAAATTATTT
61 ATAATAAAATTTATCTATTATATTAAATTAACAAAATTATTT
7297817 ATAATTTTTA
Statistics
Matches: 98, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
103 2 0.02
104 31 0.32
105 19 0.19
106 1 0.01
107 3 0.03
108 42 0.43
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.54
Consensus pattern (104 bp):
TTTATATATTTATTAGTTTATTATATAATAATAAAATTCATTTATTTATTAATTTATTATATAAT
AAAATTTATCTATTATATTAAATTAACAAAATTATTTTA
Found at i:7297810 original size:27 final size:24
Alignment explanation
Indices: 7297759--7297812 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 24
7297749 TTATTTATTT
* *
7297759 ATTTATTTATTATATAATAATAAA
1 ATTTATCTATTATATAATAACAAA
7297783 ATTTATCTATTATATTAAATTAACAAA
1 ATTTATCTATTATA-T-AA-TAACAAA
7297810 ATT
1 ATT
7297813 ATTTATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 13 0.52
25 1 0.04
26 2 0.08
27 9 0.36
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (24 bp):
ATTTATCTATTATATAATAACAAA
Found at i:7315234 original size:54 final size:54
Alignment explanation
Indices: 7315161--7315314 Score: 157
Period size: 54 Copynumber: 2.9 Consensus size: 54
7315151 CCATTTCTTA
* * * *
7315161 CCAACATGCTCAATGTGCCCTTAAGCACCACACTTCTTGTGTTAAGGTTCCATG
1 CCAACACGCTCAATGTGCCCTTATGCACCACACTTCTTATGTTAAGGTCCCATG
* * * * * *
7315215 CCAACACGCTTAATATGCCC-TAGTGCATCATATTTCTTATGTTAAGGTCCCGTG
1 CCAACACGCTCAATGTGCCCTTA-TGCACCACACTTCTTATGTTAAGGTCCCATG
* * * * *
7315269 CCAAAACGCTCAATGTGCCCTTGTGCACCACATTTATTATGATAAG
1 CCAACACGCTCAATGTGCCCTTATGCACCACACTTCTTATGTTAAG
7315315 ACTTTACACC
Statistics
Matches: 80, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
53 2 0.03
54 77 0.96
55 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (54 bp):
CCAACACGCTCAATGTGCCCTTATGCACCACACTTCTTATGTTAAGGTCCCATG
Found at i:7337035 original size:10 final size:11
Alignment explanation
Indices: 7337006--7337044 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
7336996 AAAACAAAAC
*
7337006 AAAAAAATGAA
1 AAAAAAAAGAA
7337017 ATGAAAAAAAGAA
1 A--AAAAAAAGAA
7337030 AAAAAAAAGAA
1 AAAAAAAAGAA
7337041 AAAA
1 AAAA
7337045 GACTCTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 15 0.60
13 10 0.40
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:7338041 original size:39 final size:39
Alignment explanation
Indices: 7337974--7338431 Score: 353
Period size: 39 Copynumber: 11.7 Consensus size: 39
7337964 AAGGAAATTT
*
7337974 TTTATTTTTAAAGTTGTTGTGCCTTTATTATGGAGAAGCC
1 TTTATTTTTAAAGTT-TTGTGCCTCTATTATGGAGAAGCC
* * * * *
7338014 TTTATTTTTAAAATTATGTGCCTTTATTATAGA-AGAGCT
1 TTTATTTTTAAAGTTTTGTGCCTCTATTATGGAGA-AGCC
*
7338053 TTTATTTTTAAAGTTGTTGTGCATCTATTATGGA-AAGCC
1 TTTATTTTTAAAGTT-TTGTGCCTCTATTATGGAGAAGCC
* * * *
7338092 CTTATTTTTAAAGTTGTTATGCCTCTATTATAGAAAAGCC
1 TTTATTTTTAAAGTT-TTGTGCCTCTATTATGGAGAAGCC
* * * * *
7338132 CTTATTTTTAAAGTTGTATGCCTTTATTATGGACAAG-C
1 TTTATTTTTAAAGTTTTGTGCCTCTATTATGGAGAAGCC
* * ** **
7338170 TCTTATTTTTAAAGTTGTTATGCCTTTATTATAAATG-AGAT
1 T-TTATTTTTAAAGTT-TTGTGCCTCTATTATGGA-GAAGCC
* *
7338211 TTTATTTTTAAAGTTGTTATGCCTCTATTATGGAAAAGCC
1 TTTATTTTTAAAGTT-TTGTGCCTCTATTATGGAGAAGCC
* * * *
7338251 -TTATTTTTAAAG--CTATGCATCTATTATGGAAAAG-C
1 TTTATTTTTAAAGTTTTGTGCCTCTATTATGGAGAAGCC
* * * *
7338286 TCTTATTTTTAAAGTTATGTGCCTTTATTATAGAGAAGCT
1 T-TTATTTTTAAAGTTTTGTGCCTCTATTATGGAGAAGCC
** * *
7338326 TTTATTTTTAAA-ACTTGTGTCTCTATTATTGATG-AGCC
1 TTTATTTTTAAAGTTTTGTGCCTCTATTATGGA-GAAGCC
* * * *
7338364 ATTT-TTTTTAAAGTTGTGTGTCTCTATTGTTGAGAAGCC
1 -TTTATTTTTAAAGTTTTGTGCCTCTATTATGGAGAAGCC
* *
7338403 TTTATTTTTAAAAGTTATGTGCCTTTATT
1 TTTATTTTT-AAAGTTTTGTGCCTCTATT
7338432 TTCGATGAGT
Statistics
Matches: 346, Mismatches: 53, Indels: 38
0.79 0.12 0.09
Matches are distributed among these distances:
35 1 0.00
36 20 0.06
37 12 0.03
38 31 0.09
39 166 0.48
40 115 0.33
41 1 0.00
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (39 bp):
TTTATTTTTAAAGTTTTGTGCCTCTATTATGGAGAAGCC
Found at i:7338064 original size:79 final size:79
Alignment explanation
Indices: 7337973--7338431 Score: 436
Period size: 79 Copynumber: 5.9 Consensus size: 79
7337963 TAAGGAAATT
* *
7337973 TTTTATTTTTAAAGTTGTTGTGCCTTTATTATGGAGAAGCCTTTATTTTTAAAATTATGTGCCTT
1 TTTTATTTTTAAAGTTGTTGTGCCTCTATTATGGAGAAGCCTTTATTTTTAAAATTATGTGCCTC
7338038 TATTATAGAAGAGC
66 TATTATAGAAGAGC
* * * * *
7338052 TTTTATTTTTAAAGTTGTTGTGCATCTATTATGGA-AAGCCCTTATTTTTAAAGTTGTTATGCCT
1 TTTTATTTTTAAAGTTGTTGTGCCTCTATTATGGAGAAGCCTTTATTTTTAAAATT-ATGTGCCT
*
7338116 CTATTATAGAAAAGC
65 CTATTATAGAAGAGC
** * * * * * *
7338131 CCTTATTTTTAAAGTTG-TATGCCTTTATTATGGACAAG-CTCTTATTTTTAAAGTTGTTATGCC
1 TTTTATTTTTAAAGTTGTTGTGCCTCTATTATGGAGAAGCCT-TTATTTTTAAAATT-ATGTGCC
* *
7338194 TTTATTATA-AATGAGA
64 TCTATTATAGAA-GAGC
* * ** *
7338210 TTTTATTTTTAAAGTTGTTATGCCTCTATTATGGAAAAGCC-TTATTTTTAAAGCTA--TGCATC
1 TTTTATTTTTAAAGTTGTTGTGCCTCTATTATGGAGAAGCCTTTATTTTTAAAATTATGTGCCTC
* *
7338272 TATTATGGAAAAGC
66 TATTATAGAAGAGC
* * * * * * *
7338286 TCTTATTTTTAAAGTT-ATGTGCCTTTATTATAGAGAAGCTTTTATTTTTAAAACT-TGTGTCTC
1 TTTTATTTTTAAAGTTGTTGTGCCTCTATTATGGAGAAGCCTTTATTTTTAAAATTATGTGCCTC
* *
7338349 TATTATTGATGAGCC
66 TATTATAGAAGAG-C
* * * *
7338364 ATTT-TTTTTAAAGTTG-TGTGTCTCTATTGTTGAGAAGCCTTTATTTTTAAAAGTTATGTGCCT
1 TTTTATTTTTAAAGTTGTTGTGCCTCTATTATGGAGAAGCCTTTATTTTTAAAA-TTATGTGCCT
*
7338427 TTATT
65 CTATT
7338432 TTCGATGAGT
Statistics
Matches: 315, Mismatches: 51, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
75 18 0.06
76 40 0.13
77 58 0.18
78 39 0.12
79 140 0.44
80 19 0.06
81 1 0.00
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (79 bp):
TTTTATTTTTAAAGTTGTTGTGCCTCTATTATGGAGAAGCCTTTATTTTTAAAATTATGTGCCTC
TATTATAGAAGAGC
Found at i:7338176 original size:118 final size:116
Alignment explanation
Indices: 7337973--7338337 Score: 441
Period size: 118 Copynumber: 3.1 Consensus size: 116
7337963 TAAGGAAATT
* * * * * *
7337973 TTTTATTTTTAAAGTTGTTGTGCCTTTATTATGGAGAAGCCTTTATTTTTAAAATTATGTGCCTT
1 TTTTATTTTTAAAGTTGTTATGCCTCTATTATGGAAAAGCCCTTATTTTTAAAGTTATATGCCTT
* * * *
7338038 TATTATAGAAGAGCTTTTATTTTTAAAGTTGTTGTGCATCTATTATGGAAAGC
66 TATTATGGAA-AGCTCTTATTTTTAAAGTTGTTGTGCCTTTATTAT-GAAAGC
** * *
7338091 CCTTATTTTTAAAGTTGTTATGCCTCTATTATAGAAAAGCCCTTATTTTTAAAGTTGTATGCCTT
1 TTTTATTTTTAAAGTTGTTATGCCTCTATTATGGAAAAGCCCTTATTTTTAAAGTTATATGCCTT
* * *
7338156 TATTATGGACAAGCTCTTATTTTTAAAGTTGTTATGCCTTTATTATAAATGAGA
66 TATTATGGA-AAGCTCTTATTTTTAAAGTTGTTGTGCCTTTATTATGAA--AGC
* * *
7338210 TTTTATTTTTAAAGTTGTTATGCCTCTATTATGGAAAAG-CCTTATTTTTAAAG--CTATGCATC
1 TTTTATTTTTAAAGTTGTTATGCCTCTATTATGGAAAAGCCCTTATTTTTAAAGTTATATGCCTT
*
7338272 TATTATGGAAAAGCTCTTATTTTTAAAGTT-ATGTGCCTTTATTATAGAGAAGC
66 TATTATGG-AAAGCTCTTATTTTTAAAGTTGTTGTGCCTTTATTAT-GA-AAGC
7338325 TTTTATTTTTAAA
1 TTTTATTTTTAAA
7338338 ACTTGTGTCT
Statistics
Matches: 214, Mismatches: 27, Indels: 15
0.84 0.11 0.06
Matches are distributed among these distances:
115 28 0.13
116 35 0.16
117 4 0.02
118 108 0.50
119 39 0.18
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.47
Consensus pattern (116 bp):
TTTTATTTTTAAAGTTGTTATGCCTCTATTATGGAAAAGCCCTTATTTTTAAAGTTATATGCCTT
TATTATGGAAAGCTCTTATTTTTAAAGTTGTTGTGCCTTTATTATGAAAGC
Found at i:7338607 original size:31 final size:31
Alignment explanation
Indices: 7338569--7338627 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
7338559 AACTATAAAC
*
7338569 ACCCTATTTGGTCTGAGCCCAAATCAATTGG
1 ACCCTATTTGGTCTGAGCCCAAACCAATTGG
*
7338600 ACCCTATTTGGTTTGAGCCCAAACCAAT
1 ACCCTATTTGGTCTGAGCCCAAACCAAT
7338628 CCAAGTCTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
ACCCTATTTGGTCTGAGCCCAAACCAATTGG
Found at i:7340449 original size:22 final size:23
Alignment explanation
Indices: 7340419--7340461 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7340409 TTGGTCCAAA
**
7340419 TTGTGAAAATTTAAAAATAAAAT
1 TTGTGAAAATAAAAAAATAAAAT
7340442 TTGT-AAAATAAAAAAATAAA
1 TTGTGAAAATAAAAAAATAAA
7340462 TTCCAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (23 bp):
TTGTGAAAATAAAAAAATAAAAT
Found at i:7342035 original size:121 final size:122
Alignment explanation
Indices: 7341806--7342039 Score: 310
Period size: 121 Copynumber: 1.9 Consensus size: 122
7341796 TTTCAGTTAC
** * * *
7341806 CCATTTTTCAAAATAAAAACATTCATTCTTTTGTAAAAAAAAAAAAAAGATACATTTTCAGAAAT
1 CCATTTTTCAAAATAAAAACATTCATTCCCTCGT----AAAAAAAAAAGATACATTTTAAAAAAT
* *
7341871 TATAACCATTAATTGTAGGAAACAGCTCTCCACTGCAAACACGACATGTAAAAAATTATAA
62 TATAACAATTAATTGTAGGAAACAGCTCTCCACTCCAAACACGACATGTAAAAAATTATAA
*
7341932 CCATTTTTCAAAATAAAAACATTCATTCCCTCGT-AAAAAGAAA-ATACATTTTAAAAAACTTAT
1 CCATTTTTCAAAATAAAAACATTCATTCCCTCGTAAAAAAAAAAGATACATTTTAAAAAA-TTAT
** *
7341995 AACAATTAATTGTAGGAAACAGCTCTCCGTTCCAAGCACGACATG
65 AACAATTAATTGTAGGAAACAGCTCTCCACTCCAAACACGACATG
7342040 GATCCTGTTC
Statistics
Matches: 96, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
120 13 0.14
121 52 0.54
126 31 0.32
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.28
Consensus pattern (122 bp):
CCATTTTTCAAAATAAAAACATTCATTCCCTCGTAAAAAAAAAAGATACATTTTAAAAAATTATA
ACAATTAATTGTAGGAAACAGCTCTCCACTCCAAACACGACATGTAAAAAATTATAA
Found at i:7346339 original size:21 final size:21
Alignment explanation
Indices: 7346313--7346357 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
7346303 TAAAGGTTCT
*
7346313 TAAGATGTACAATGTAGACTA
1 TAAGATGTACAATGTAGAATA
7346334 TAAGATGTACAATGTAGAATA
1 TAAGATGTACAATGTAGAATA
7346355 TAA
1 TAA
7346358 AGTCCTCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.47, C:0.07, G:0.18, T:0.29
Consensus pattern (21 bp):
TAAGATGTACAATGTAGAATA
Found at i:7348408 original size:2 final size:2
Alignment explanation
Indices: 7348401--7348464 Score: 94
Period size: 2 Copynumber: 32.5 Consensus size: 2
7348391 ATCCAAGCAA
* *
7348401 AT AT AT AT AC AT AT AT AT AT AT AT AT A- AT AT AT AT AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7348442 AT AC AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
7348465 AAGCCAAATA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
1 1 0.02
2 54 0.98
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:7349352 original size:3 final size:3
Alignment explanation
Indices: 7349344--7349379 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
7349334 TTTTAATATA
7349344 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7349380 TTCTTTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7351309 original size:29 final size:29
Alignment explanation
Indices: 7351269--7351328 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
7351259 ACATTATAAT
* *
7351269 AAAATATTTAATGTGATATTTAAATTTTA
1 AAAATATTTAATGTAATATTTAAATTATA
*
7351298 AAAAT-TTATAATTTAATATTTAAATTATA
1 AAAATATT-TAATGTAATATTTAAATTATA
7351327 AA
1 AA
7351329 TTTATTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 25 0.93
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (29 bp):
AAAATATTTAATGTAATATTTAAATTATA
Found at i:7351329 original size:27 final size:28
Alignment explanation
Indices: 7351284--7351343 Score: 79
Period size: 27 Copynumber: 2.1 Consensus size: 28
7351274 ATTTAATGTG
7351284 ATATTTAAATTTTAAAAATTTA-TAATTTA
1 ATATTTAAA-TTTAAAAATTTATTAA-TTA
*
7351313 ATATTTAAA-TTATAAATTTATTAATTA
1 ATATTTAAATTTAAAAATTTATTAATTA
7351340 ATAT
1 ATAT
7351344 AATATTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 17 0.59
28 3 0.10
29 9 0.31
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (28 bp):
ATATTTAAATTTAAAAATTTATTAATTA
Found at i:7351496 original size:16 final size:16
Alignment explanation
Indices: 7351470--7351507 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
7351460 AAATTCAAAT
7351470 ATTACATTATAATTATA
1 ATTA-ATTATAATTATA
*
7351487 ATTAATTATAGTTATA
1 ATTAATTATAATTATA
7351503 ATTAA
1 ATTAA
7351508 GAGTAATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (16 bp):
ATTAATTATAATTATA
Found at i:7355315 original size:17 final size:17
Alignment explanation
Indices: 7355293--7355334 Score: 75
Period size: 17 Copynumber: 2.4 Consensus size: 17
7355283 ACTTCCTTTC
7355293 TTTTTCTTTAGGTATAT
1 TTTTTCTTTAGGTATAT
7355310 TTTTTCTTTAGGTATAT
1 TTTTTCTTTAGGTATAT
7355327 TTCTTTCT
1 TT-TTTCT
7355335 GAAGTAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 19 0.79
18 5 0.21
ACGTcount: A:0.14, C:0.10, G:0.10, T:0.67
Consensus pattern (17 bp):
TTTTTCTTTAGGTATAT
Found at i:7357229 original size:78 final size:76
Alignment explanation
Indices: 7357106--7357250 Score: 166
Period size: 78 Copynumber: 1.9 Consensus size: 76
7357096 TGAAAAGATG
* **
7357106 AAATTTTTTTTTCATAATTCAATAAAAATAATGTTTCTAAGATAAAAAAAACATGATTTTTATTA
1 AAATTTTTTTTTCAGAATTCAATAAAAATAACATTTCTAAGATAAAAAAAACA--ATTTTTATTA
7357171 AAAATATGAAAAA
64 AAAATATGAAAAA
* * * * * * *
7357184 AAATTTATTTTTT-AGAATTTAATAAATATAACATTTTTAATATAAAGAATACAATTTTTATTGA
1 AAATTT-TTTTTTCAGAATTCAATAAAAATAACATTTCTAAGATAAAAAAAACAATTTTTATTAA
7357248 AAA
65 AAA
7357251 GATAACATTT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
76 13 0.23
78 37 0.66
79 6 0.11
ACGTcount: A:0.50, C:0.04, G:0.05, T:0.41
Consensus pattern (76 bp):
AAATTTTTTTTTCAGAATTCAATAAAAATAACATTTCTAAGATAAAAAAAACAATTTTTATTAAA
AATATGAAAAA
Found at i:7357260 original size:20 final size:20
Alignment explanation
Indices: 7357205--7357261 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
7357195 TTAGAATTTA
*
7357205 ATAAATATAACATTTTTAAT
1 ATAAAGATAACATTTTTAAT
*
7357225 ATAAAGA-ATACAATTTTTATT
1 ATAAAGATA-AC-ATTTTTAAT
7357246 GA-AAAGATAACATTTT
1 -ATAAAGATAACATTTT
7357262 AAAGATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
19 1 0.03
20 13 0.42
21 15 0.48
22 2 0.06
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.40
Consensus pattern (20 bp):
ATAAAGATAACATTTTTAAT
Found at i:7357574 original size:174 final size:176
Alignment explanation
Indices: 7357286--7357633 Score: 682
Period size: 175 Copynumber: 2.0 Consensus size: 176
7357276 TATAAACATG
7357286 AAAAAAAAATTCCAAAATTTAATAAAGACAATGTTTTTAAAATTAAAAAAAAAATGAGATTTTTG
1 AAAAAAAAATTCCAAAATTTAATAAAGACAATGTTTTTAAAATTAAAAAAAAAATGAGATTTTTG
7357351 TTGAAAAAATGATGTTTTCAAAATAAAAACACAATATTTGTTAAAAACATG-AAAAAAATATTTT
66 TTGAAAAAATGATGTTTTCAAAATAAAAACACAATATTTGTTAAAAACATGAAAAAAAATATTTT
7357415 TTAGAATTTAACAAAGATAAAATAATAAAAAAAAATGCAGTGTTGA
131 TTAGAATTTAACAAAGATAAAATAATAAAAAAAAATGCAGTGTTGA
7357461 AAAAAAAAATTCCAAAATTTAATAAAGACAATGTTTTTAAAATT-AAAAAAAAATGAGATTTTTG
1 AAAAAAAAATTCCAAAATTTAATAAAGACAATGTTTTTAAAATTAAAAAAAAAATGAGATTTTTG
7357525 TTGAAAAAATGATGTTTTCAAAATAAAAACACAATATTTGTTAAAAACATGAAAAAAAATATTTT
66 TTGAAAAAATGATGTTTTCAAAATAAAAACACAATATTTGTTAAAAACATGAAAAAAAATATTTT
7357590 TTAGAATTTAACAAAGATAAAATAATAAAAAAAAATGCAGTGTT
131 TTAGAATTTAACAAAGATAAAATAATAAAAAAAAATGCAGTGTT
7357634 CATTAAAAAG
Statistics
Matches: 172, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
174 71 0.41
175 101 0.59
ACGTcount: A:0.55, C:0.05, G:0.09, T:0.30
Consensus pattern (176 bp):
AAAAAAAAATTCCAAAATTTAATAAAGACAATGTTTTTAAAATTAAAAAAAAAATGAGATTTTTG
TTGAAAAAATGATGTTTTCAAAATAAAAACACAATATTTGTTAAAAACATGAAAAAAAATATTTT
TTAGAATTTAACAAAGATAAAATAATAAAAAAAAATGCAGTGTTGA
Found at i:7357877 original size:41 final size:40
Alignment explanation
Indices: 7357791--7357876 Score: 100
Period size: 42 Copynumber: 2.1 Consensus size: 40
7357781 AGCATTCAAT
**
7357791 AAAAATGACATTTCTAAAATAAAAATGTAGCCTTTTGTTA
1 AAAAATGACATTTCTAAAATAAAAATACAGCCTTTTGTTA
* ** *
7357831 AAAAATCGACTTTTCTAAAATAAAAAATACAGTTTTTTGTTG
1 AAAAAT-GACATTTCTAAAAT-AAAAATACAGCCTTTTGTTA
7357873 AAAA
1 AAAA
7357877 TTTTTTAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 6 0.16
41 13 0.34
42 19 0.50
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (40 bp):
AAAAATGACATTTCTAAAATAAAAATACAGCCTTTTGTTA
Found at i:7357938 original size:37 final size:38
Alignment explanation
Indices: 7357888--7357968 Score: 105
Period size: 37 Copynumber: 2.2 Consensus size: 38
7357878 TTTTTAAAAA
*
7357888 ATAAAA-CATAAAATATC-TTGACATAATATTATTATAT
1 ATAAAATCATAAAATA-CATTGACATAATATTATTATAC
* *
7357925 ATAAAATC-TAAAATACATTTACTTAATATTATTATAC
1 ATAAAATCATAAAATACATTGACATAATATTATTATAC
7357962 ATAAAAT
1 ATAAAAT
7357969 TTATTTATAG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
36 1 0.03
37 37 0.95
38 1 0.03
ACGTcount: A:0.52, C:0.09, G:0.01, T:0.38
Consensus pattern (38 bp):
ATAAAATCATAAAATACATTGACATAATATTATTATAC
Found at i:7358817 original size:18 final size:19
Alignment explanation
Indices: 7358791--7358827 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7358781 AATGCAGAGA
7358791 TTAAAATTATTT-ATTTAT
1 TTAAAATTATTTAATTTAT
*
7358809 TTAATATTATTTAATTTAT
1 TTAAAATTATTTAATTTAT
7358828 GTGTATGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTAAAATTATTTAATTTAT
Found at i:7368955 original size:21 final size:21
Alignment explanation
Indices: 7368931--7368974 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7368921 ATCAAAATAG
*
7368931 GTTGTACATATA-ATATTATAT
1 GTTGTA-ATATATATATTAGAT
7368952 GTTGTAATATATATATTAGAT
1 GTTGTAATATATATATTAGAT
7368973 GT
1 GT
7368975 GTGGTTTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (21 bp):
GTTGTAATATATATATTAGAT
Found at i:7376827 original size:32 final size:31
Alignment explanation
Indices: 7376785--7376849 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 31
7376775 TTAACTTCGG
*
7376785 TATTTAAAAAAA-ATATTTTTTTATTTATTTTT
1 TATTTAAAAAAACATA-TTTATTA-TTATTTTT
*
7376817 TATTTTAAAAAACATATTTATTATTATTTTT
1 TATTTAAAAAAACATATTTATTATTATTTTT
7376848 TA
1 TA
7376850 GTATTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 10 0.33
32 17 0.57
33 3 0.10
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (31 bp):
TATTTAAAAAAACATATTTATTATTATTTTT
Found at i:7376844 original size:31 final size:33
Alignment explanation
Indices: 7376787--7376849 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
7376777 AACTTCGGTA
*
7376787 TTTAAAAAAAATATTTTTTTATTTATTTTTTAT
1 TTTAAAAAAAATATTTTATTATTTATTTTTTAT
*
7376820 TTTAAAAAACATA-TTTATTA-TTATTTTTTA
1 TTTAAAAAAAATATTTTATTATTTATTTTTTA
7376850 GTATTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 10 0.36
32 6 0.21
33 12 0.43
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (33 bp):
TTTAAAAAAAATATTTTATTATTTATTTTTTAT
Found at i:7378081 original size:17 final size:17
Alignment explanation
Indices: 7378035--7378086 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
7378025 CTAACAGGGC
7378035 TATTTTTTTT-TTTCCT
1 TATTTTTTTTCTTTCCT
* * *
7378051 TATTTTTCTCCTTTCTT
1 TATTTTTTTTCTTTCCT
*
7378068 TATTTTTTTTCTTTTCT
1 TATTTTTTTTCTTTCCT
7378085 TA
1 TA
7378087 AGCTAAGATT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
16 8 0.29
17 20 0.71
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (17 bp):
TATTTTTTTTCTTTCCT
Found at i:7380497 original size:54 final size:53
Alignment explanation
Indices: 7380412--7380539 Score: 134
Period size: 54 Copynumber: 2.3 Consensus size: 53
7380402 ACTTACATGT
* *
7380412 TTTAATTTTTCTTATCTATACCAACGGTTAGAGATTGT-TGTATAGAATTGTATGC
1 TTTAATTTTT-TTAT-TATACCAACGGTTAGAGATTGTCAGTATAGAATTATAT-C
* * *
7380467 TTTAATTTTTTTACTTATACCGA-GGATTAGAGATTGTCAGTATAGACTTATATT
1 TTTAATTTTTTTA-TTATACCAACGG-TTAGAGATTGTCAGTATAGAATTATATC
*
7380521 TTTTATTTTTTTAATTATA
1 TTTAATTTTTTT-ATTATA
7380540 TTTTATTGAC
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
53 2 0.03
54 37 0.59
55 24 0.38
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.50
Consensus pattern (53 bp):
TTTAATTTTTTTATTATACCAACGGTTAGAGATTGTCAGTATAGAATTATATC
Found at i:7380835 original size:15 final size:15
Alignment explanation
Indices: 7380815--7380843 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7380805 TATTAAGTCT
7380815 GATAAAACAAACATC
1 GATAAAACAAACATC
7380830 GATAAAACAAACAT
1 GATAAAACAAACAT
7380844 AAATAAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.17, G:0.07, T:0.14
Consensus pattern (15 bp):
GATAAAACAAACATC
Found at i:7380849 original size:15 final size:15
Alignment explanation
Indices: 7380816--7380850 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7380806 ATTAAGTCTG
**
7380816 ATAAAACAAACATCG
1 ATAAAACAAACATAA
7380831 ATAAAACAAACATAA
1 ATAAAACAAACATAA
7380846 ATAAA
1 ATAAA
7380851 GAGTTACACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.69, C:0.14, G:0.03, T:0.14
Consensus pattern (15 bp):
ATAAAACAAACATAA
Found at i:7381466 original size:68 final size:68
Alignment explanation
Indices: 7381375--7381501 Score: 193
Period size: 68 Copynumber: 1.9 Consensus size: 68
7381365 ATAGAAGGTA
** * *
7381375 AGAAGGTAATCATTTATTCATATACTAG-TAAAAATAATTTTATAAACATCTTATTCATTCATAT
1 AGAAGGTAATCATCCATTCATATACCAGCT-AAAATAATTTTATAAACATCCTATTCATTCATAT
7381439 ATAT
65 ATAT
*
7381443 AGAAGGTAATCATCCATTTATATACCAGCTAAAATAATTTTATAAACATCCTATTCATT
1 AGAAGGTAATCATCCATTCATATACCAGCTAAAATAATTTTATAAACATCCTATTCATT
7381502 AGTGTAATGC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
68 52 0.98
69 1 0.02
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (68 bp):
AGAAGGTAATCATCCATTCATATACCAGCTAAAATAATTTTATAAACATCCTATTCATTCATATA
TAT
Found at i:7388066 original size:19 final size:19
Alignment explanation
Indices: 7388042--7388081 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
7388032 GCGAGTTAAA
7388042 GACTAAAAGGCAAGGTAAG
1 GACTAAAAGGCAAGGTAAG
7388061 GACTAAAAGGCAAGGTAAG
1 GACTAAAAGGCAAGGTAAG
7388080 GA
1 GA
7388082 TGGTGGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.10, G:0.33, T:0.10
Consensus pattern (19 bp):
GACTAAAAGGCAAGGTAAG
Found at i:7390739 original size:31 final size:31
Alignment explanation
Indices: 7390701--7390762 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
7390691 TATTGTTATG
*
7390701 GCCCATCTTATTATTGTTTTTCAAGATGATT
1 GCCCATCTTATTATTGTCTTTCAAGATGATT
7390732 GCCCATCTTATTATTGTCTTTCAAGATGATT
1 GCCCATCTTATTATTGTCTTTCAAGATGATT
7390763 TTGCTAGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.47
Consensus pattern (31 bp):
GCCCATCTTATTATTGTCTTTCAAGATGATT
Found at i:7393202 original size:116 final size:116
Alignment explanation
Indices: 7392992--7393206 Score: 310
Period size: 116 Copynumber: 1.9 Consensus size: 116
7392982 TGTTTTTGGT
*
7392992 CAAAAACACGTTTAATAATCCACAAATTATTCATTTAGAGGAGATTATTCAAGATATTTTCTATA
1 CAAAAACACGTTGAATAATCCACAAATTATTCATTTAGAGGAGATTATTCAAGATATTTTCTATA
* * *
7393057 AAAAGCACCTTTAATAATCCTAGCATTTTTTTTTTTTGGAATATTTAAGGC
66 AAAAGCACCTTCAATAATCATAACATTTTTTTTTTTTGGAATATTTAAGGC
* * *
7393108 CAAAAACATC-TTGAATAATCCATAAATTATTCATTTAGAAGG-GATTGTTCAAGATATTTTCTG
1 CAAAAACA-CGTTGAATAATCCACAAATTATTCATTTAG-AGGAGATTATTCAAGATATTTTCTA
*
7393171 TGAAAAA-CACCTTCAATAATCATAACGTTTTTTTTT
64 T-AAAAAGCACCTTCAATAATCATAACATTTTTTTTT
7393207 AATATTCAAG
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
116 79 0.90
117 9 0.10
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (116 bp):
CAAAAACACGTTGAATAATCCACAAATTATTCATTTAGAGGAGATTATTCAAGATATTTTCTATA
AAAAGCACCTTCAATAATCATAACATTTTTTTTTTTTGGAATATTTAAGGC
Found at i:7393608 original size:27 final size:26
Alignment explanation
Indices: 7393552--7393611 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
7393542 TAAAGTTAAA
* *
7393552 AAATTTTTAATCTAATATTTAATTAT
1 AAATTTTTAATCTAATATATAATTAC
*
7393578 AAATTTATTAAT-TAATATAATACTTAC
1 AAATTT-TTAATCTAATAT-ATAATTAC
7393605 AAATTTT
1 AAATTTT
7393612 ATTTAAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 13 0.45
27 16 0.55
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (26 bp):
AAATTTTTAATCTAATATATAATTAC
Found at i:7393750 original size:27 final size:27
Alignment explanation
Indices: 7393715--7393767 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7393705 TTATTAGAGG
* * *
7393715 AAAATATTATGAATTAATATTTTTTTT
1 AAAAAATTAGGAATAAATATTTTTTTT
7393742 AAAAAATTAGGAATAAATATTTTTTT
1 AAAAAATTAGGAATAAATATTTTTTT
7393768 GAGCTTATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (27 bp):
AAAAAATTAGGAATAAATATTTTTTTT
Found at i:7394569 original size:3 final size:3
Alignment explanation
Indices: 7394561--7394591 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
7394551 ATCATATTAG
7394561 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7394592 CCCTGAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7395535 original size:30 final size:29
Alignment explanation
Indices: 7395487--7395549 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
7395477 TTAAAAAATG
* * * *
7395487 AAATATTTAAAAATTTAAAAATTTTTAAAA
1 AAATATGTAAAAACTT-AAAATATTCAAAA
*
7395517 AAATATGTCAAAACTTAAAATATTCAAAA
1 AAATATGTAAAAACTTAAAATATTCAAAA
7395546 AAAT
1 AAAT
7395550 CTTAAAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 15 0.54
30 13 0.46
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (29 bp):
AAATATGTAAAAACTTAAAATATTCAAAA
Found at i:7395553 original size:20 final size:20
Alignment explanation
Indices: 7395526--7395589 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
7395516 AAAATATGTC
7395526 AAAA-CTTAAAATATTCAAA
1 AAAATCTTAAAATATTCAAA
*
7395545 AAAATCTTAAAAT-TTTAATA
1 AAAATCTTAAAATATTCAA-A
7395565 AAAATTTCTTAAAATA--CAAA
1 AAAA--TCTTAAAATATTCAAA
7395585 AAAAT
1 AAAAT
7395590 TCACAAAAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
18 1 0.03
19 8 0.21
20 18 0.47
21 2 0.05
22 9 0.24
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAATCTTAAAATATTCAAA
Found at i:7395649 original size:20 final size:18
Alignment explanation
Indices: 7395619--7395664 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
7395609 TGAAAATAAA
**
7395619 AAAAAATTAAACTTTTTT
1 AAAAAATTAAAAATTTTT
7395637 GAAAAAATCTAAAAATTTTT
1 -AAAAAAT-TAAAAATTTTT
7395657 AAAAAATT
1 AAAAAATT
7395665 GTAAATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 1 0.04
19 14 0.58
20 9 0.38
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (18 bp):
AAAAAATTAAAAATTTTT
Found at i:7395669 original size:20 final size:20
Alignment explanation
Indices: 7395632--7395681 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
7395622 AAATTAAACT
7395632 TTTTTGAAAAAATCTAAA-AA
1 TTTTT-AAAAAATCTAAATAA
*
7395652 TTTTTAAAAAATTGTAAATAA
1 TTTTTAAAAAA-TCTAAATAA
*
7395673 TTTATAAAA
1 TTTTTAAAA
7395682 TTTATGACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 6 0.23
20 10 0.38
21 10 0.38
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (20 bp):
TTTTTAAAAAATCTAAATAA
Found at i:7395748 original size:20 final size:18
Alignment explanation
Indices: 7395725--7395785 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 18
7395715 ATTTTAATTT
7395725 TTTTTTATATATTTCATGAA
1 TTTTTTAT-TATTT-ATGAA
*
7395745 TTTTTT-TTATTTTTTGATA
1 TTTTTTATTA-TTTATGA-A
7395764 TTTTTTATTATTTAT-AA
1 TTTTTTATTATTTATGAA
7395781 TTTTT
1 TTTTT
7395786 AGCATATTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
17 6 0.17
18 6 0.17
19 15 0.42
20 9 0.25
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.72
Consensus pattern (18 bp):
TTTTTTATTATTTATGAA
Found at i:7395769 original size:17 final size:16
Alignment explanation
Indices: 7395747--7395786 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
7395737 TTCATGAATT
*
7395747 TTTTTTATTTTTTGATA
1 TTTTTTATTATTT-ATA
7395764 TTTTTTATTATTTATA
1 TTTTTTATTATTTATA
*
7395780 ATTTTTA
1 TTTTTTA
7395787 GCATATTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTTTTATTATTTATA
Found at i:7395823 original size:37 final size:37
Alignment explanation
Indices: 7395761--7395854 Score: 88
Period size: 37 Copynumber: 2.6 Consensus size: 37
7395751 TTATTTTTTG
* *
7395761 ATATT-TTTTATTATTT-ATAATTTTTAGC-ATATTTCA
1 ATATTATTTTATT-TTTAAAAACTTTTAGCAAT-TTTCA
* *
7395797 ATATTATTTTATTTTTAAAAACTTTTAGGAATTTTTA
1 ATATTATTTTATTTTTAAAAACTTTTAGCAATTTTCA
*
7395834 ATA-AATTTTATATTTTAAAAA
1 ATATTATTTTAT-TTTTAAAAA
7395855 AATTAAAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
36 15 0.31
37 32 0.65
38 2 0.04
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.56
Consensus pattern (37 bp):
ATATTATTTTATTTTTAAAAACTTTTAGCAATTTTCA
Found at i:7395957 original size:17 final size:17
Alignment explanation
Indices: 7395935--7395999 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
7395925 GTGAATTTTT
7395935 TTTTTAATTTTAAGAAA
1 TTTTTAATTTTAAGAAA
*
7395952 TTTTTATTTTTATTA-AAA
1 TTTTTAATTTTA--AGAAA
* **
7395970 TTTTTATTTTTTTG-AA
1 TTTTTAATTTTAAGAAA
7395986 TTTTTAAGTTTTAA
1 TTTTTAA-TTTTAA
7396000 TTATTTTTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
16 8 0.21
17 15 0.39
18 14 0.37
19 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.65
Consensus pattern (17 bp):
TTTTTAATTTTAAGAAA
Found at i:7396071 original size:21 final size:19
Alignment explanation
Indices: 7396047--7396089 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
7396037 ATATTTTTTT
7396047 AATTTTTATAAAAGTTTTTAG
1 AATTTTT-TAAAA-TTTTTAG
*
7396068 AATTTTTTAAAATTTTTTG
1 AATTTTTTAAAATTTTTAG
7396087 AAT
1 AAT
7396090 CTTTCTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 5 0.24
21 7 0.33
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (19 bp):
AATTTTTTAAAATTTTTAG
Found at i:7396076 original size:10 final size:10
Alignment explanation
Indices: 7396047--7396085 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
7396037 ATATTTTTTT
7396047 AATTTTTATAA
1 AATTTTT-TAA
* *
7396058 AAGTTTTTAG
1 AATTTTTTAA
7396068 AATTTTTTAA
1 AATTTTTTAA
7396078 AATTTTTT
1 AATTTTTT
7396086 GAATCTTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
10 18 0.75
11 6 0.25
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:7400532 original size:26 final size:24
Alignment explanation
Indices: 7400475--7400536 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 24
7400465 AAATCTGAAG
*
7400475 ATAAATCAAATC-AAAAAATAAAAG
1 ATAAAT-AAATCAAAAAAATAAAAA
7400499 A-AAA-AAATCAAAATAAATAAAATA
1 ATAAATAAATCAAAA-AAATAAAA-A
7400523 ATAAATAAAT-AAAA
1 ATAAATAAATCAAAA
7400537 CTCAAAAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
21 5 0.16
22 3 0.09
23 11 0.34
24 2 0.06
25 7 0.22
26 4 0.12
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.18
Consensus pattern (24 bp):
ATAAATAAATCAAAAAAATAAAAA
Found at i:7400927 original size:44 final size:45
Alignment explanation
Indices: 7400858--7401244 Score: 256
Period size: 43 Copynumber: 8.7 Consensus size: 45
7400848 ACATAAAAAC
* * * * *
7400858 TCCTCTAAATAGAGGCACCACGAC-TTCAAAAAAGTAAACAAAGG
1 TCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAGTAAACAAAGG
* * *
7400902 TCCTCTAAACAGAGGCTTAATGACTTTGAAAAAAATAAATC-AAGA
1 TCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAGTAAA-CAAAGG
* *
7400947 TCCTCTAAACAGAGGCTCAATGACTTTGAAAAAA-TAAATAAAGC
1 TCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAGTAAACAAAGG
* * *
7400991 TCCTCTAAGCAGAGGCTCAACGACTTTGAAAAAAGTAAATAAAGG
1 TCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAGTAAACAAAGG
* * ** * * *
7401036 CTCTTCTAAACAGAAGCTCAAAAACTTTG-AAGAA-TAAACAATGC
1 -TCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAGTAAACAAAGG
* * * ** * * * *
7401080 TTCTCTAATCAAAGGCTCAACAACTTTG-AAGAA-TAAATAATGC
1 TCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAGTAAACAAAGG
** * ** *
7401123 TCCTCTAATTAGAGGCTTAACAACTTTGAAAAAAGTAAATAAAGG
1 TCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAGTAAACAAAGG
** * ** * * * *
7401168 CTTATCTAAACAGAAGCTCAACAACTTTG-AAGAA-TAAATAATGC
1 -TCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAGTAAACAAAGG
7401212 TCCTCTAATA-AGAGGCTCAA-GAACTTTGAAAAA
1 TCCTCTAA-ACAGAGGCTCAATG-ACTTTGAAAAA
7401245 TAAAATAAGG
Statistics
Matches: 281, Mismatches: 51, Indels: 22
0.79 0.14 0.06
Matches are distributed among these distances:
43 81 0.29
44 81 0.29
45 73 0.26
46 46 0.16
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.23
Consensus pattern (45 bp):
TCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAGTAAACAAAGG
Found at i:7400952 original size:45 final size:45
Alignment explanation
Indices: 7400857--7401328 Score: 305
Period size: 44 Copynumber: 10.8 Consensus size: 45
7400847 AACATAAAAA
* * * * * * *
7400857 CTCCTCTAAATAGAGGCACCACGAC-TTCAAAAAAGTAAACAAAG
1 CTCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAATAAATAAAG
* * *
7400901 GTCCTCTAAACAGAGGCTTAATGACTTTGAAAAAAATAAATCAAG
1 CTCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAATAAATAAAG
*
7400946 ATCCTCTAAACAGAGGCTCAATGACTTTG-AAAAAATAAATAAAG
1 CTCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAATAAATAAAG
* * *
7400990 CTCCTCTAAGCAGAGGCTCAACGACTTTGAAAAAAGTAAATAAAGG
1 CTCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAATAAATAAA-G
* * ** * * *
7401036 CTCTTCTAAACAGAAGCTCAAAAACTTTG--AAGAATAAACAATG
1 CTCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAATAAATAAAG
* * * ** * *
7401079 CTTCTCTAATCAAAGGCTCAACAACTTTG--AAGAATAAATAATG
1 CTCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAATAAATAAAG
** * ** *
7401122 CTCCTCTAATTAGAGGCTTAACAACTTTGAAAAAAGTAAATAAAGG
1 CTCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAATAAATAAA-G
** * ** * *
7401168 CTTATCTAAACAGAAGCTCAACAACTTTG--AAGAATAAATAATG
1 CTCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAATAAATAAAG
* *
7401211 CTCCTCTAATA-AGAGGCTCAA-GAACTTTGAAAAATA-AAATAAGG
1 CTCCTCTAA-ACAGAGGCTCAATG-ACTTTGAAAAAAATAAATAAAG
* ** * * ** *
7401255 TTTCC-CTAAGTATAGGCTTAACAACTTTG-GAAAAATAAAT--A-
1 -CTCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAATAAATAAAG
7401296 CTCCTCTAAACAGAGGCTCACA--ACTTTGAAAAA
1 CTCCTCTAAACAGAGGCTCA-ATGACTTTGAAAAA
7401329 TAAAGCTCTT
Statistics
Matches: 341, Mismatches: 70, Indels: 37
0.76 0.16 0.08
Matches are distributed among these distances:
40 9 0.03
41 14 0.04
42 1 0.00
43 89 0.26
44 108 0.32
45 71 0.21
46 49 0.14
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (45 bp):
CTCCTCTAAACAGAGGCTCAATGACTTTGAAAAAAATAAATAAAG
Found at i:7400995 original size:89 final size:85
Alignment explanation
Indices: 7400857--7401332 Score: 372
Period size: 89 Copynumber: 5.4 Consensus size: 85
7400847 AACATAAAAA
* * * ** * * *
7400857 CTCCTCTAAATAGAGGCACCACGACTTCAAAAAAGTAAACAAAGGTCCTCTAAACAGAGGCTTAA
1 CTCCTCTAAACAGAGGC-TCAAGACTTTGAAAAA-TAAATAAAGCTCCTCTAAACAGAGGCTCAA
**
7400922 TGACTTTGAAAAAAATAAATCAA-G
64 CAACTTTG--AAAAATAAAT-AATG
* *
7400946 ATCCTCTAAACAGAGGCTCAATGACTTTGAAAAAATAAATAAAGCTCCTCTAAGCAGAGGCTCAA
1 CTCCTCTAAACAGAGGCTCAA-GACTTTG-AAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAA
* *
7401011 CGACTTTGAAAAAAGTAAATAAAGG
64 CAACTTTG-AAAAA-TAAAT-AATG
* * * * * * * * *
7401036 CTCTTCTAAACAGAAGCTCAAAAACTTTGAAGAATAAACAATGCTTCTCTAATCAAAGGCTCAAC
1 CTCCTCTAAACAGAGGCTC-AAGACTTTGAAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAAC
*
7401101 AACTTTGAAGAATAAATAATG
65 AACTTTGAAAAATAAATAATG
** * * ** *
7401122 CTCCTCTAATTAGAGGCTTAACAACTTTGAAAAAAGTAAATAAAGGCTTATCTAAACAGAAGCTC
1 CTCCTCTAAACAGAGGCTCAA-GACTTTG-AAAAA-TAAATAAA-GCTCCTCTAAACAGAGGCTC
*
7401187 AACAACTTTGAAGAATAAATAATG
62 AACAACTTTGAAAAATAAATAATG
* * ** * *
7401211 CTCCTCTAATA-AGAGGCTCAAGAACTTTGAAAAATAAAATAAGGTTTCC-CTAAGTATAGGCTT
1 CTCCTCTAA-ACAGAGGCTCAAG-ACTTTGAAAAAT-AAATAAAG-CTCCTCTAAACAGAGGCTC
7401274 AACAACTTTGGAAAAATAAAT-A--
62 AACAACTTT-GAAAAATAAATAATG
7401296 CTCCTCTAAACAGAGGCTCACA-ACTTTGAAAAATAAA
1 CTCCTCTAAACAGAGGCTCA-AGACTTTGAAAAATAAA
7401333 GCTCTTTGAT
Statistics
Matches: 321, Mismatches: 50, Indels: 38
0.78 0.12 0.09
Matches are distributed among these distances:
83 3 0.01
84 13 0.04
85 20 0.06
86 25 0.08
87 30 0.09
88 40 0.12
89 160 0.50
90 28 0.09
91 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (85 bp):
CTCCTCTAAACAGAGGCTCAAGACTTTGAAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACA
ACTTTGAAAAATAAATAATG
Found at i:7401105 original size:43 final size:43
Alignment explanation
Indices: 7400902--7401332 Score: 322
Period size: 43 Copynumber: 9.9 Consensus size: 43
7400892 TAAACAAAGG
* * ** *
7400902 TCCTCTAAACAGAGGCTTAATGACTTTGAAAAAAATAAATCAA-GA
1 TCCTCTAAACAAAGGCTCAACAACTTTG--AAAAATAAAT-AATGC
* ** *
7400947 TCCTCTAAACAGAGGCTCAATGACTTTGAAAAAATAAATAAAGC
1 TCCTCTAAACAAAGGCTCAACAACTTTG-AAAAATAAATAATGC
* * * *
7400991 TCCTCTAAGCAGAGGCTCAACGACTTTGAAAAAAGTAAATAAAGGC
1 TCCTCTAAACAAAGGCTCAACAACTTTG-AAAAA-TAAAT-AATGC
* * * *
7401037 TCTTCTAAACAGAA-GCTCAAAAACTTTGAAGAATAAACAATGC
1 TCCTCTAAACA-AAGGCTCAACAACTTTGAAAAATAAATAATGC
* * *
7401080 TTCTCTAATCAAAGGCTCAACAACTTTGAAGAATAAATAATGC
1 TCCTCTAAACAAAGGCTCAACAACTTTGAAAAATAAATAATGC
** * * *
7401123 TCCTCTAATTAGAGGCTTAACAACTTTGAAAAAAGTAAATAAAGGC
1 TCCTCTAAACAAAGGCTCAACAACTTTG-AAAAA-TAAAT-AATGC
** *
7401169 TTATCTAAACAGAA-GCTCAACAACTTTGAAGAATAAATAATGC
1 TCCTCTAAACA-AAGGCTCAACAACTTTGAAAAATAAATAATGC
* * * *
7401212 TCCTCTAATA-AGAGGCTCAAGAACTTTGAAAAATAAAATAAGGTT
1 TCCTCTAA-ACAAAGGCTCAACAACTTTGAAAAAT-AAATAATG-C
** * *
7401257 TCC-CTAAGTATAGGCTTAACAACTTTGGAAAAATAAAT-A--C
1 TCCTCTAAACAAAGGCTCAACAACTTT-GAAAAATAAATAATGC
*
7401297 TCCTCTAAACAGAGGCTC-ACAACTTTGAAAAATAAA
1 TCCTCTAAACAAAGGCTCAACAACTTTGAAAAATAAA
7401333 GCTCTTTGAT
Statistics
Matches: 322, Mismatches: 48, Indels: 38
0.79 0.12 0.09
Matches are distributed among these distances:
39 10 0.03
40 11 0.03
41 10 0.03
42 3 0.01
43 95 0.30
44 87 0.27
45 55 0.17
46 49 0.15
47 2 0.01
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.25
Consensus pattern (43 bp):
TCCTCTAAACAAAGGCTCAACAACTTTGAAAAATAAATAATGC
Found at i:7401151 original size:132 final size:132
Alignment explanation
Indices: 7400885--7401332 Score: 493
Period size: 132 Copynumber: 3.4 Consensus size: 132
7400875 CCACGACTTC
* * * ** *
7400885 AAAAAAGTAAACAAAGG-TCCTCTAAACAGAGGCTTAATGACTTTGAAAAAAATAAATCAA-GAT
1 AAAAAAGTAAATAAAGGCTCCTCTAAACAGAAGCTCAACAACTTTG--AAAAATAAA-CAATGCT
* * ** * * *
7400948 CCTCTAAACAGAGGCTCAATGACTTTGAAAAAATAAATAAAGCTCCTCTAAGCAGAGGCTCAACG
63 CCTCTAATCAAAGGCTCAACAACTTTG-AAAAATAAATAAAGCTCCTCTAAGTAGAGGCTTAACA
7401013 ACTTTG
127 ACTTTG
* * * *
7401019 AAAAAAGTAAATAAAGGCTCTTCTAAACAGAAGCTCAAAAACTTTGAAGAATAAACAATGCTTCT
1 AAAAAAGTAAATAAAGGCTCCTCTAAACAGAAGCTCAACAACTTTGAAAAATAAACAATGCTCCT
* * *
7401084 CTAATCAAAGGCTCAACAACTTTGAAGAATAAATAATGCTCCTCTAATTAGAGGCTTAACAACTT
66 CTAATCAAAGGCTCAACAACTTTGAAAAATAAATAAAGCTCCTCTAAGTAGAGGCTTAACAACTT
7401149 TG
131 TG
** * *
7401151 AAAAAAGTAAATAAAGGCTTATCTAAACAGAAGCTCAACAACTTTGAAGAATAAATAATGCTCCT
1 AAAAAAGTAAATAAAGGCTCCTCTAAACAGAAGCTCAACAACTTTGAAAAATAAACAATGCTCCT
* * * *
7401216 CTAAT-AAGAGGCTCAAGAACTTTGAAAAATAAAATAAGGTTTCC-CTAAGTATAGGCTTAACAA
66 CTAATCAA-AGGCTCAACAACTTTGAAAAAT-AAATAAAG-CTCCTCTAAGTAGAGGCTTAACAA
7401279 CTTTG
128 CTTTG
* *
7401284 GAAAAA-TAAAT--A--CTCCTCTAAACAGAGGCTC-ACAACTTTGAAAAATAAA
1 AAAAAAGTAAATAAAGGCTCCTCTAAACAGAAGCTCAACAACTTTGAAAAATAAA
7401333 GCTCTTTGAT
Statistics
Matches: 274, Mismatches: 35, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
127 17 0.06
128 16 0.06
130 1 0.00
131 2 0.01
132 130 0.47
133 66 0.24
134 19 0.07
135 23 0.08
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (132 bp):
AAAAAAGTAAATAAAGGCTCCTCTAAACAGAAGCTCAACAACTTTGAAAAATAAACAATGCTCCT
CTAATCAAAGGCTCAACAACTTTGAAAAATAAATAAAGCTCCTCTAAGTAGAGGCTTAACAACTT
TG
Found at i:7401765 original size:21 final size:21
Alignment explanation
Indices: 7401739--7401780 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7401729 AGTTTCACAT
*
7401739 TTCAAAGATTCTCATTTGAAA
1 TTCAAAGACTCTCATTTGAAA
7401760 TTCAAAGACTCTCATTTGAAA
1 TTCAAAGACTCTCATTTGAAA
7401781 ACTAAACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (21 bp):
TTCAAAGACTCTCATTTGAAA
Found at i:7402332 original size:71 final size:71
Alignment explanation
Indices: 7402198--7402333 Score: 157
Period size: 71 Copynumber: 1.9 Consensus size: 71
7402188 ACTTGATAGC
* * * *
7402198 AATTCACAGGCTTTTCAGCACTAGCAATTTCAGAACAAATTTCGTCAATTGATCTATACTATTTT
1 AATTCACAGGCTTCTCAACACTAGCAATTTCAGAACAAATTTCGTCAATTGATCCACACTATTTT
7402263 CACCAT
66 CACCAT
* * * * * * *
7402269 AATTCATAGGCTTCTCAACACTAGCCATTTTAGAATAAATTTTGTC-CTCTGATCCACATTATTT
1 AATTCACAGGCTTCTCAACACTAGCAATTTCAGAACAAATTTCGTCAAT-TGATCCACACTATTT
7402333 T
65 T
7402334 TATCATTCGA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
70 1 0.02
71 52 0.98
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.38
Consensus pattern (71 bp):
AATTCACAGGCTTCTCAACACTAGCAATTTCAGAACAAATTTCGTCAATTGATCCACACTATTTT
CACCAT
Found at i:7402993 original size:18 final size:17
Alignment explanation
Indices: 7402949--7403061 Score: 90
Period size: 18 Copynumber: 6.7 Consensus size: 17
7402939 TTTCCTCTCC
*
7402949 TTTTCATTTTTTCCTTT
1 TTTTCATTTTTTCTTTT
** *
7402966 TTCGCTTTTCTTTCTTTT
1 TTTTCATTT-TTTCTTTT
**
7402984 TTTTCA---TTTCTCAT
1 TTTTCATTTTTTCTTTT
* *
7402998 CTTTCATTCTTTCATTTT
1 TTTTCATTTTTTC-TTTT
*
7403016 TTTTCATTTTTTC-ATT
1 TTTTCATTTTTTCTTTT
7403032 TTTTCATTTTTTCATTTT
1 TTTTCATTTTTTC-TTTT
7403050 TTTTCATTTTTT
1 TTTTCATTTTTT
7403062 TTAATTTTTT
Statistics
Matches: 73, Mismatches: 16, Indels: 13
0.72 0.16 0.13
Matches are distributed among these distances:
14 11 0.15
16 15 0.21
17 10 0.14
18 37 0.51
ACGTcount: A:0.09, C:0.17, G:0.01, T:0.73
Consensus pattern (17 bp):
TTTTCATTTTTTCTTTT
Found at i:7403022 original size:10 final size:10
Alignment explanation
Indices: 7403007--7403086 Score: 82
Period size: 10 Copynumber: 8.3 Consensus size: 10
7402997 TCTTTCATTC
7403007 TTTCATTTTT
1 TTTCATTTTT
7403017 TTTCA--TTT
1 TTTCATTTTT
7403025 TTTCA--TTT
1 TTTCATTTTT
7403033 TTTCA--TTT
1 TTTCATTTTT
7403041 TTTCATTTTT
1 TTTCATTTTT
7403051 TTTCATTTTT
1 TTTCATTTTT
*
7403061 TTTAATTTTTTGT
1 TTTCA--TTTT-T
7403074 TTTCATTTTT
1 TTTCATTTTT
7403084 TTT
1 TTT
7403087 ATCCATTAGT
Statistics
Matches: 63, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
8 24 0.38
10 26 0.41
11 4 0.06
12 4 0.06
13 5 0.08
ACGTcount: A:0.11, C:0.09, G:0.01, T:0.79
Consensus pattern (10 bp):
TTTCATTTTT
Found at i:7403036 original size:26 final size:25
Alignment explanation
Indices: 7402949--7403061 Score: 83
Period size: 26 Copynumber: 4.5 Consensus size: 25
7402939 TTTCCTCTCC
* *
7402949 TTTTCATTTTTTC-CTTTTTCGCTTT
1 TTTTCATTTTTTCATTTTTTC-ATTT
* *
7402974 TCTTTCTTTTTTTTCA-TTTCTCA--T
1 T-TTTC-ATTTTTTCATTTTTTCATTT
* *
7402998 CTTTCATTCTTTCATTTTTTTTCA-TT
1 TTTTCATTTTTTCA--TTTTTTCATTT
7403024 TTTTCATTTTTTCATTTTTTCATTTT
1 TTTTCATTTTTTCATTTTTTCA-TTT
7403050 TTTTCATTTTTT
1 TTTTCATTTTTT
7403062 TTAATTTTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
22 7 0.10
23 4 0.06
24 9 0.13
25 7 0.10
26 31 0.44
27 12 0.17
ACGTcount: A:0.09, C:0.17, G:0.01, T:0.73
Consensus pattern (25 bp):
TTTTCATTTTTTCATTTTTTCATTT
Found at i:7403037 original size:34 final size:34
Alignment explanation
Indices: 7402949--7403061 Score: 133
Period size: 34 Copynumber: 3.4 Consensus size: 34
7402939 TTTCCTCTCC
* * *
7402949 TTTTCATTTTTTCCTTTTTCGCTTTTCTTTC-TTTT
1 TTTTCATTTTTTCATTTTT-TC-ATTCTTTCATTTT
* *
7402984 TTTTCA-TTTCTCA-TCTTTCATTCTTTCATTTT
1 TTTTCATTTTTTCATTTTTTCATTCTTTCATTTT
*
7403016 TTTTCATTTTTTCATTTTTTCATTTTTTCATTTT
1 TTTTCATTTTTTCATTTTTTCATTCTTTCATTTT
7403050 TTTTCATTTTTT
1 TTTTCATTTTTT
7403062 TTAATTTTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
31 7 0.10
32 11 0.16
33 9 0.13
34 34 0.51
35 6 0.09
ACGTcount: A:0.09, C:0.17, G:0.01, T:0.73
Consensus pattern (34 bp):
TTTTCATTTTTTCATTTTTTCATTCTTTCATTTT
Found at i:7403084 original size:8 final size:8
Alignment explanation
Indices: 7402949--7403061 Score: 86
Period size: 8 Copynumber: 13.5 Consensus size: 8
7402939 TTTCCTCTCC
7402949 TTTTCATT
1 TTTTCATT
*
7402957 TTTTCCTT
1 TTTTCATT
* *
7402965 TTTCGCTTT
1 TTT-TCATT
*
7402974 TCTTTCTTTT
1 T-TTTC-ATT
7402984 TTTTCA-T
1 TTTTCATT
*
7402991 TTCTCA-T
1 TTTTCATT
*
7402998 CTTTCATT
1 TTTTCATT
*
7403006 CTTTCATTTT
1 TTTTCA--TT
7403016 TTTTCATT
1 TTTTCATT
7403024 TTTTCATT
1 TTTTCATT
7403032 TTTTCATT
1 TTTTCATT
7403040 TTTTCATTTT
1 TTTTCA--TT
7403050 TTTTCATT
1 TTTTCATT
7403058 TTTT
1 TTTT
7403062 TTAATTTTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
7 11 0.12
8 47 0.53
9 9 0.10
10 21 0.24
ACGTcount: A:0.09, C:0.17, G:0.01, T:0.73
Consensus pattern (8 bp):
TTTTCATT
Found at i:7403084 original size:34 final size:33
Alignment explanation
Indices: 7403007--7403086 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
7402997 TCTTTCATTC
* *
7403007 TTTCATTTTTTTTCATTTTTTCATTTTTTCATTT
1 TTTCATTTTTTTTCATTTTTTCAATTTTT-ATGT
*
7403041 TTTCATTTTTTTTCATTTTTTTTAATTTTT-TGT
1 TTTCATTTTTTTTCA-TTTTTTCAATTTTTATGT
7403074 TTTCATTTTTTTT
1 TTTCATTTTTTTT
7403087 ATCCATTAGT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
33 15 0.36
34 15 0.36
35 12 0.29
ACGTcount: A:0.11, C:0.09, G:0.01, T:0.79
Consensus pattern (33 bp):
TTTCATTTTTTTTCATTTTTTCAATTTTTATGT
Found at i:7405315 original size:64 final size:65
Alignment explanation
Indices: 7405242--7405678 Score: 284
Period size: 64 Copynumber: 6.7 Consensus size: 65
7405232 ATTGTATGGC
* *
7405242 ATTATTGAAGGTATTTTTTACCAAAAACATCTTCAATAATCCAT-TCAAAAAATTTTGAAGAGGG
1 ATTATTGAAGGCATTTTTTACCAAAAACACCTTCAATAATCCATATCAAAAAATTTTGAAGAGGG
* ** **
7405306 ATTATTGAAGGCGTTTTCAACCAAAAATGCCTTCAATAATCCAATAATCTATACAAAAAATTTTG
1 ATTATTGAAGGCATTTTTTACCAAAAACACCTTCAATAATCC----A--TAT-CAAAAAATTTTG
7405371 AA-AGGG
59 AAGAGGG
** * * * *
7405377 ATTATTGAAGGCA-TTTTTATCCAAAAATGCTTTCAATAATCTATAT-AAAAATTTTTTTAAG-G
1 ATTATTGAAGGCATTTTTTA-CCAAAAACACCTTCAATAATCCATATCAAAAA-ATTTTGAAGAG
7405439 GG
64 GG
* ** ** * * * * *
7405441 ATTATTAAAGGCATTTTTGGCTGAAAACACCTTCAATAATCC-TCTTAATAAATTTTTATTGAGG
1 ATTATTGAAGGCATTTTTTACCAAAAACACCTTCAATAATCCATATCAAAAAATTTTGA-AGAGG
7405505 AG
65 -G
* ***** ** * *
7405507 ATTATTGAATGCATTTTCGGTTAAAAATGCCTTCAATAATTCATA-CAAAAAATTTTGAAGA-GA
1 ATTATTGAAGGCATTTTTTACCAAAAACACCTTCAATAATCCATATCAAAAAATTTTGAAGAGGG
* * * * **
7405570 ATTATTAAAGGTATTTTTGT-CCATAAACGCCTTCAATAATCCATAT-AAAAAATTTTGTTGAGG
1 ATTATTGAAGGCATTTTT-TACCAAAAACACCTTCAATAATCCATATCAAAAAATTTTGAAGA-G
7405633 GG
64 GG
* ** *
7405635 ATTATTAAAGGCA-TTTTTAGCCAAAAATGCCTTTAATAATCCAT
1 ATTATTGAAGGCATTTTTTA-CCAAAAACACCTTCAATAATCCAT
7405679 GAATTATTCA
Statistics
Matches: 292, Mismatches: 58, Indels: 45
0.74 0.15 0.11
Matches are distributed among these distances:
63 61 0.21
64 82 0.28
65 45 0.15
66 45 0.15
67 2 0.01
68 1 0.00
70 5 0.02
71 37 0.13
72 14 0.05
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.36
Consensus pattern (65 bp):
ATTATTGAAGGCATTTTTTACCAAAAACACCTTCAATAATCCATATCAAAAAATTTTGAAGAGGG
Found at i:7405401 original size:71 final size:72
Alignment explanation
Indices: 7405275--7405417 Score: 225
Period size: 71 Copynumber: 2.0 Consensus size: 72
7405265 AAAACATCTT
* *
7405275 CAATAATCCATTCAAAAAATTTTGAAGAGGGATTATTGAAGGCGTTTTCAACCAAAAATGCCTTC
1 CAATAATCCATACAAAAAATTTTGAAGAGGGATTATTGAAGGCATTTTCAACCAAAAATGCCTTC
7405340 AATAATC
66 AATAATC
* * * *
7405347 CAATAATCTATACAAAAAATTTTGAA-AGGGATTATTGAAGGCATTTTTATCCAAAAATGCTTTC
1 CAATAATCCATACAAAAAATTTTGAAGAGGGATTATTGAAGGCATTTTCAACCAAAAATGCCTTC
7405411 AATAATC
66 AATAATC
7405418 TATATAAAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
71 41 0.63
72 24 0.37
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (72 bp):
CAATAATCCATACAAAAAATTTTGAAGAGGGATTATTGAAGGCATTTTCAACCAAAAATGCCTTC
AATAATC
Found at i:7405673 original size:65 final size:65
Alignment explanation
Indices: 7405347--7405678 Score: 291
Period size: 63 Copynumber: 5.2 Consensus size: 65
7405337 TTCAATAATC
* * * * * *
7405347 CAATAATCTATACAAAAAATTTTG--AAAGGGATTATTGAAGGCATTTTTATCCAAAAATGCTTT
1 CAATAATCCATATAAAAAATTTTGTTAAGGGGATTATTAAAGGCATTTTTAGCCAAAAATGCCTT
* * * ** **
7405410 CAATAATCTATAT-AAAAATTTTTTTAAGGGGATTATTAAAGGCATTTTTGGCTGAAAACACCTT
1 CAATAATCCATATAAAAAATTTTGTTAAGGGGATTATTAAAGGCATTTTTAGCCAAAAATGCCTT
* * * * * * * ** **
7405474 CAATAATCC-TCTTAATAAATTTTTATTGAGGAGATTATTGAATGCATTTTCGGTTAAAAATGCC
1 CAATAATCCAT-ATAA-AAAATTTTGTTAAGGGGATTATTAAAGGCATTTTTAGCCAAAAATGCC
7405538 TT
64 TT
* * * * * * *
7405540 CAATAATTCATACAAAAAATTTTG--AAGAGAATTATTAAAGGTATTTTT-GTCCATAAACGCCT
1 CAATAATCCATATAAAAAATTTTGTTAAGGGGATTATTAAAGGCATTTTTAG-CCAAAAATGCCT
7405602 T
65 T
*
7405603 CAATAATCCATATAAAAAATTTTGTTGAGGGGATTATTAAAGGCATTTTTAGCCAAAAATGCCTT
1 CAATAATCCATATAAAAAATTTTGTTAAGGGGATTATTAAAGGCATTTTTAGCCAAAAATGCCTT
*
7405668 TAATAATCCAT
1 CAATAATCCAT
7405679 GAATTATTCA
Statistics
Matches: 209, Mismatches: 50, Indels: 18
0.75 0.18 0.06
Matches are distributed among these distances:
62 10 0.05
63 60 0.29
64 39 0.19
65 49 0.23
66 50 0.24
67 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (65 bp):
CAATAATCCATATAAAAAATTTTGTTAAGGGGATTATTAAAGGCATTTTTAGCCAAAAATGCCTT
Found at i:7405759 original size:62 final size:61
Alignment explanation
Indices: 7405681--7406012 Score: 147
Period size: 62 Copynumber: 5.3 Consensus size: 61
7405671 TAATCCATGA
*
7405681 ATTATTCAAGGT-ATTTTTAGCTAGAAACGCATTCAATAACCTCATTAAAAATTTTGTAAGGG
1 ATTATTCAA-GTCATTTTTAGCTAAAAACGCATTCAATAACC-CATTAAAAATTTTGTAAGGG
* * * *
7405743 ATTATTCAAGTCATTTTCTGGCTAAAAACATC-TTCAA-AATCCCATCATAAAAA--TTGAAAGA
1 ATTATTCAAGTCATTTT-TAGCTAAAAAC-GCATTCAATAA-CCCAT--TAAAAATTTTGTAAGG
7405804 G
61 G
* * * * ** *
7405805 ATTATTCAAAG-CATTTTATTGGC-AAAAATGCTTTGAATATGCC---AAAAATGCCTTTAATAA
1 ATTATTC-AAGTCA-TTT-TTAGCTAAAAACGCATTCAATAACCCATTAAAAAT---TTT-GT-A
* *
7405865 TCCATGA
58 ---AGGG
* *
7405872 ATTATTCAAGGT-ATTTTTAGCTAGAAACGCATTCAATAACCTCATTAAATATTTTGTAAGGG
1 ATTATTCAA-GTCATTTTTAGCTAAAAACGCATTCAATAACC-CATTAAAAATTTTGTAAGGG
* *
7405934 ATTATTCAAGTCATTTTCTGGCTAAAAACATC-TTCAA-AATCCCATCATAAAAA--TTG-AAGG
1 ATTATTCAAGTCATTTT-TAGCTAAAAAC-GCATTCAATAA-CCCAT--TAAAAATTTTGTAAGG
7405994 AG
61 -G
*
7405996 ATTATTCAAGGCATTTT
1 ATTATTCAAGTCATTTT
7406013 ATTGGCAAAA
Statistics
Matches: 204, Mismatches: 31, Indels: 70
0.67 0.10 0.23
Matches are distributed among these distances:
57 5 0.02
61 9 0.04
62 89 0.44
63 43 0.21
64 15 0.07
65 5 0.02
66 19 0.09
67 14 0.07
70 5 0.02
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (61 bp):
ATTATTCAAGTCATTTTTAGCTAAAAACGCATTCAATAACCCATTAAAAATTTTGTAAGGG
Found at i:7405978 original size:191 final size:191
Alignment explanation
Indices: 7405654--7406043 Score: 735
Period size: 191 Copynumber: 2.0 Consensus size: 191
7405644 GGCATTTTTA
7405654 GCCAAAAATGCCTTTAATAATCCATGAATTATTCAAGGTATTTTTAGCTAGAAACGCATTCAATA
1 GCCAAAAATGCCTTTAATAATCCATGAATTATTCAAGGTATTTTTAGCTAGAAACGCATTCAATA
7405719 ACCTCATTAAAAATTTTGTAAGGGATTATTCAAGTCATTTTCTGGCTAAAAACATCTTCAAAATC
66 ACCTCATTAAAAATTTTGTAAGGGATTATTCAAGTCATTTTCTGGCTAAAAACATCTTCAAAATC
*
7405784 CCATCATAAAAATTGAAAGAGATTATTCAAAGCATTTTATTGGCAAAAATGCTTTGAATAT
131 CCATCATAAAAATTGAAAGAGATTATTCAAAGCATTTTATTGGCAAAAACGCTTTGAATAT
7405845 GCCAAAAATGCCTTTAATAATCCATGAATTATTCAAGGTATTTTTAGCTAGAAACGCATTCAATA
1 GCCAAAAATGCCTTTAATAATCCATGAATTATTCAAGGTATTTTTAGCTAGAAACGCATTCAATA
*
7405910 ACCTCATTAAATATTTTGTAAGGGATTATTCAAGTCATTTTCTGGCTAAAAACATCTTCAAAATC
66 ACCTCATTAAAAATTTTGTAAGGGATTATTCAAGTCATTTTCTGGCTAAAAACATCTTCAAAATC
* *
7405975 CCATCATAAAAATTGAAGGAGATTATTCAAGGCATTTTATTGGCAAAAACGCTTTGAATAT
131 CCATCATAAAAATTGAAAGAGATTATTCAAAGCATTTTATTGGCAAAAACGCTTTGAATAT
*
7406036 TCCAAAAA
1 GCCAAAAA
7406044 AAAAATACTA
Statistics
Matches: 194, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
191 194 1.00
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (191 bp):
GCCAAAAATGCCTTTAATAATCCATGAATTATTCAAGGTATTTTTAGCTAGAAACGCATTCAATA
ACCTCATTAAAAATTTTGTAAGGGATTATTCAAGTCATTTTCTGGCTAAAAACATCTTCAAAATC
CCATCATAAAAATTGAAAGAGATTATTCAAAGCATTTTATTGGCAAAAACGCTTTGAATAT
Found at i:7406326 original size:62 final size:62
Alignment explanation
Indices: 7406175--7406329 Score: 170
Period size: 63 Copynumber: 2.5 Consensus size: 62
7406165 TATTTAAGAT
* * * * * *
7406175 ATTTTTAGCCAAAAATGCTTTCAATAACCCCATATAATATTTTGTAAAGGATTATTTAATGC
1 ATTTTTAGTCAAAAATGCTTTCAATAATCCCATATAATATATTGGAAAGGATTATTGAAAGC
* * *
7406237 ATTTTTTAGTTAAAAACGCCTTCAATAATCCCATCATAA-A-ATTGGAAAGGGATTATTGAAAGC
1 A-TTTTTAGTCAAAAATGCTTTCAATAATCCCAT-ATAATATATTGGAAA-GGATTATTGAAAGC
* *
7406300 ATTTTTGGTCAAAAATGCTTTTAATAATCC
1 ATTTTTAGTCAAAAATGCTTTCAATAATCC
7406330 ACTAATAAAA
Statistics
Matches: 76, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
62 31 0.41
63 41 0.54
64 4 0.05
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (62 bp):
ATTTTTAGTCAAAAATGCTTTCAATAATCCCATATAATATATTGGAAAGGATTATTGAAAGC
Found at i:7413100 original size:24 final size:24
Alignment explanation
Indices: 7413060--7413106 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7413050 AAAACATATC
* *
7413060 ATATTATGATTATAAATA-AATTA
1 ATATTATAATTAAAAATATAATTA
7413083 ATATTAATAATTAAAAATATAATT
1 ATATT-ATAATTAAAAATATAATT
7413107 TTTAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 11 0.55
25 4 0.20
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
ATATTATAATTAAAAATATAATTA
Found at i:7413419 original size:69 final size:69
Alignment explanation
Indices: 7413308--7413448 Score: 237
Period size: 69 Copynumber: 2.0 Consensus size: 69
7413298 CGTTATAGGT
* *
7413308 AAGAATATTAAAAAAAATACAAATCTATACTCATGGATGCTAAGCGTTGATATAGGTAAGAACAA
1 AAGAATATTAAAAAAAATACAAATCTATACTCATGGATGCTAAACGTCGATATAGGTAAGAACAA
7413373 TTAA
66 TTAA
* * *
7413377 AAGAATATTAAAAAAAATACAAGTCTATACTGATGGATGCTAAACGTCGGTATAGGTAAGAACAA
1 AAGAATATTAAAAAAAATACAAATCTATACTCATGGATGCTAAACGTCGATATAGGTAAGAACAA
7413442 TTAA
66 TTAA
7413446 AAG
1 AAG
7413449 TCTATACTAA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.49, C:0.10, G:0.16, T:0.25
Consensus pattern (69 bp):
AAGAATATTAAAAAAAATACAAATCTATACTCATGGATGCTAAACGTCGATATAGGTAAGAACAA
TTAA
Found at i:7416248 original size:2 final size:2
Alignment explanation
Indices: 7416241--7416283 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
7416231 TAAGATCCTC
7416241 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7416282 AT
1 AT
7416284 TCTATTCAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7416832 original size:40 final size:40
Alignment explanation
Indices: 7416777--7416856 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
7416767 AAAAGAAAAA
7416777 AAAAAAAATCTAGACAACCAACAAGCATAAATCTTGAACT
1 AAAAAAAATCTAGACAACCAACAAGCATAAATCTTGAACT
*
7416817 AAAAAAAATCTAGACAACCAACAAGCATATATCTTGAACT
1 AAAAAAAATCTAGACAACCAACAAGCATAAATCTTGAACT
7416857 TCTATTCTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.54, C:0.20, G:0.07, T:0.19
Consensus pattern (40 bp):
AAAAAAAATCTAGACAACCAACAAGCATAAATCTTGAACT
Done.