Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 32 of 131
Found at i:7423801 original size:41 final size:41
Alignment explanation
Indices: 7423671--7423916 Score: 185
Period size: 41 Copynumber: 5.9 Consensus size: 41
7423661 AAAACTCCCT
* * * * *
7423671 TAAATAGAGGCTC-ACAACTTTGAAAAACAAATAAAGCTCTTT
1 TAAACAGAGGCTCAACAACTTTGAAAAA-TAA-AAGGCTCATC
* * * ** *
7423713 TAAGCAGAGGCTTAACAACTTTAAAAAATAAATAAATTACTCCTC
1 TAAACAGAGGCTCAACAACTTTGAAAAAT--A-AAA-GGCTCATC
* * *
7423758 TAAATAGAGGCTCAATAACTTTGAAAAATAAATGGCTCATC
1 TAAACAGAGGCTCAACAACTTTGAAAAATAAAAGGCTCATC
* * *
7423799 TAAACAGAGGCTTAACGATTTTGAAAAATAAAAGGCTCATC
1 TAAACAGAGGCTCAACAACTTTGAAAAATAAAAGGCTCATC
* * * * *
7423840 TAAATAAAGAG-TCAACGACTTTAAAAAATAAAAAGCTTC-TC
1 TAAACAGAG-GCTCAACAACTTTGAAAAATAAAAGGC-TCATC
*
7423881 TAAACATAGGCT-AACAACTTTGAAAAATAAAAGGCT
1 TAAACAGAGGCTCAACAACTTTGAAAAATAAAAGGCT
7423917 ATTCAACAAT
Statistics
Matches: 161, Mismatches: 35, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
39 1 0.01
40 21 0.13
41 78 0.48
42 15 0.09
43 14 0.09
44 3 0.02
45 29 0.18
ACGTcount: A:0.47, C:0.15, G:0.13, T:0.25
Consensus pattern (41 bp):
TAAACAGAGGCTCAACAACTTTGAAAAATAAAAGGCTCATC
Found at i:7424430 original size:22 final size:22
Alignment explanation
Indices: 7424405--7424489 Score: 66
Period size: 22 Copynumber: 3.8 Consensus size: 22
7424395 TTCCCATCTC
7424405 AAAGATTCTCATTTGAAACCAT
1 AAAGATTCTCATTTGAAACCAT
**
7424427 AAAGATTCTTGTTTGAAAACTCA-
1 AAAGATTCTCATTTG-AAAC-CAT
* * * *
7424450 AAA-ATTATCATTTAAAAACTT
1 AAAGATTCTCATTTGAAACCAT
*
7424471 AAAGTTTCTCATTTTGAAA
1 AAAGATTCTCA-TTTGAAA
7424490 TTTAAATACT
Statistics
Matches: 47, Mismatches: 11, Indels: 9
0.70 0.16 0.13
Matches are distributed among these distances:
20 1 0.02
21 6 0.13
22 25 0.53
23 13 0.28
24 2 0.04
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.36
Consensus pattern (22 bp):
AAAGATTCTCATTTGAAACCAT
Found at i:7424563 original size:47 final size:48
Alignment explanation
Indices: 7424509--7424807 Score: 187
Period size: 46 Copynumber: 6.4 Consensus size: 48
7424499 TCTTATTTGA
* * *
7424509 AACTCAAATATTCTCATTCGAGGATTTTTTAAAGATTCTCATTT-AAG
1 AACTCAAAGATTCTCATTCGAAGATTTCTTAAAGATTCTCATTTGAAG
* *
7424556 AACTCAAAGATTCTCATTTGAAGATTTCTTAAAGATTTTCATTTGAAG
1 AACTCAAAGATTCTCATTCGAAGATTTCTTAAAGATTCTCATTTGAAG
* * * * * *
7424604 ATTTCTTAAAGATTCTTATT-TAAGA-ATC--AAAGATTCTCATTTAAAG
1 A--ACTCAAAGATTCTCATTCGAAGATTTCTTAAAGATTCTCATTTGAAG
** * * * *
7424650 ATTTTTTAAAGATTCTCATT--TA-A-TACTCAAAGATTC-CTATTTGAAG
1 A--ACTCAAAGATTCTCATTCGAAGATTTCTTAAAGATTCTC-ATTTGAAG
* * * * *
7424696 ATTTCTTAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTTATTT-AAG
1 A--ACTCAAAGATTCTCATTCGAAGATTTCTTAAAGATTCTCATTTGAAG
* *
7424745 -ACTTAAAGATTCTCATTTG-AGTATTTCTTAAAGATTCTCATTT-AAG
1 AACTCAAAGATTCTCATTCGAAG-ATTTCTTAAAGATTCTCATTTGAAG
* *
7424791 -ACTAAAAAATTCTCATT
1 AACTCAAAGATTCTCATT
7424808 TGAGACTAAA
Statistics
Matches: 211, Mismatches: 29, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
44 2 0.01
45 3 0.01
46 124 0.59
47 39 0.18
48 6 0.03
49 8 0.04
50 29 0.14
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (48 bp):
AACTCAAAGATTCTCATTCGAAGATTTCTTAAAGATTCTCATTTGAAG
Found at i:7424581 original size:14 final size:13
Alignment explanation
Indices: 7424562--7424608 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
7424552 TAAGAACTCA
7424562 AAGATTCTCATTTG
1 AAGATT-TCATTTG
*
7424576 AAGATTTC--TTA
1 AAGATTTCATTTG
7424587 AAGATTTTCATTTG
1 AAGA-TTTCATTTG
7424601 AAGATTTC
1 AAGATTTC
7424609 TTAAAGATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
11 6 0.21
12 4 0.14
13 6 0.21
14 12 0.43
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.45
Consensus pattern (13 bp):
AAGATTTCATTTG
Found at i:7424644 original size:46 final size:43
Alignment explanation
Indices: 7424539--7424910 Score: 246
Period size: 46 Copynumber: 8.1 Consensus size: 43
7424529 AGGATTTTTT
* * *
7424539 AAAGATTCTCATTTAAGAACTCAAAGATTCTCATTTGAAGATTTCTT
1 AAAGATTCTCATTTAAGATCTTAAAGATTCTCATTT-AAGA---CTC
* * *
7424586 AAAGATTTTCATTTGAAGATTTCTTAAAGATTCTTATTTAAGAATC
1 AAAGATTCTCATTT-AAGA--TCTTAAAGATTCTCATTTAAGACTC
* *
7424632 AAAGATTCTCATTTAAAGATTTTTTAAAGATTCTCATTTAATACTC
1 AAAGATTCTCATTT-AAGA--TCTTAAAGATTCTCATTTAAGACTC
* *
7424678 AAAGATTC-CTATTTGAAGATTTCTTAAAGATTCTCATTTGAGGATTTCTT
1 AAAGATTCTC-ATTT-AAGA--TCTTAAAGATTCTCATTT-AAGA---CTC
* * *
7424728 AAAGATTCTTATTTAAGA-CTTAAAGATTCTCATTTGAGTATTTCTT
1 AAAGATTCTCATTTAAGATCTTAAAGATTCTCATTTAAG-A---CTC
* * * *
7424774 AAAGATTCTCATTTAAGA-CTAAAAAATTCTCATTTGAGACTA
1 AAAGATTCTCATTTAAGATCTTAAAGATTCTCATTTAAGACTC
* * * *
7424816 AAAAATTCTCATTTGAAAACGTCTTAATGATTTTCATTTAAGACTC
1 AAAGATTCTCATTT-AAGA--TCTTAAAGATTCTCATTTAAGACTC
* * * *
7424862 AAAGATTCTCATTTAAAAACATCTTAAAGATTTTTATTTGAGACTC
1 AAAGATTCTCATTT---AAGATCTTAAAGATTCTCATTTAAGACTC
7424908 AAA
1 AAA
7424911 AATTTAAAGG
Statistics
Matches: 271, Mismatches: 38, Indels: 33
0.79 0.11 0.10
Matches are distributed among these distances:
42 15 0.06
43 3 0.01
45 3 0.01
46 191 0.70
47 15 0.06
48 7 0.03
49 8 0.03
50 29 0.11
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.41
Consensus pattern (43 bp):
AAAGATTCTCATTTAAGATCTTAAAGATTCTCATTTAAGACTC
Found at i:7424651 original size:14 final size:14
Alignment explanation
Indices: 7424632--7424672 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
7424622 TTTAAGAATC
7424632 AAAGATTCTCATTT
1 AAAGATTCTCATTT
7424646 AAAGATT-T--TTT
1 AAAGATTCTCATTT
7424657 AAAGATTCTCATTT
1 AAAGATTCTCATTT
7424671 AA
1 AA
7424673 TACTCAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 10 0.42
12 1 0.04
13 1 0.04
14 12 0.50
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (14 bp):
AAAGATTCTCATTT
Found at i:7424661 original size:71 final size:71
Alignment explanation
Indices: 7424537--7424789 Score: 256
Period size: 71 Copynumber: 3.6 Consensus size: 71
7424527 CGAGGATTTT
*
7424537 TTAAAGATTCTCATTTAAGA-A-CTCAAAGATTCTCATTTGAAGATTTCTTAAAGATTTTCATTT
1 TTAAAGATTCTCATTTAAGATATCT-AAAGATTCTCATTTAAAGATTTCTTAAAGATTTTCATTT
7424600 GAAGATTTC
65 -AAGA-TTC
* * *
7424609 TTAAAGATTCTTATTTAAGA-ATC-AAAGATTCTCATTTAAAGATTTTTTAAAGATTCTCATTT-
1 TTAAAGATTCTCATTTAAGATATCTAAAGATTCTCATTTAAAGATTTCTTAAAGATTTTCATTTA
*
7424671 A-ATAC
66 AGATTC
* * * *
7424676 TCAAAGATTC-CTATTTGAAGATTTCTTAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTT-A
1 TTAAAGATTCTC-ATTT-AAGATATC-TAAAGATTCTCATTTAAAGATTTCTTAAAGATT-TTCA
7424739 TTTAAGA--C
62 TTTAAGATTC
* *
7424747 TTAAAGATTCTCATTTGAGTATTTCTTAAAGATTCTCATTTAA
1 TTAAAGATTCTCATTTAAG-ATATC-TAAAGATTCTCATTTAA
7424790 GACTAAAAAA
Statistics
Matches: 155, Mismatches: 15, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
67 15 0.10
68 5 0.03
69 3 0.02
70 2 0.01
71 105 0.68
72 23 0.15
73 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (71 bp):
TTAAAGATTCTCATTTAAGATATCTAAAGATTCTCATTTAAAGATTTCTTAAAGATTTTCATTTA
AGATTC
Found at i:7424724 original size:117 final size:117
Alignment explanation
Indices: 7424499--7424878 Score: 479
Period size: 117 Copynumber: 3.3 Consensus size: 117
7424489 ATTTAAATAC
* ** *
7424499 TCTTATTTGAA-ACTCAAATATTCTCATTCGAGGATTTTTTAAAGATTCTCATTTAAGAACTCAA
1 TCTTATTT-AAGACTCAAAGATTCTCATTTAAAGATTTTTTAAAGATTCTCATTTAA-AACTCAA
*
7424563 AGATTCTCATTTGAAGATTTCTTAAAGATTTTCATTTGAAGATTTCTTAAAGAT
64 AGATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTGAAGATTTCTTAAAGAT
* *
7424617 TCTTATTTAAGAATCAAAGATTCTCATTTAAAGATTTTTTAAAGATTCTCATTTAATACTCAAAG
1 TCTTATTTAAGACTCAAAGATTCTCATTTAAAGATTTTTTAAAGATTCTCATTTAAAACTCAAAG
*
7424682 ATTC-CTATTTGAAGATTTCTTAAAGATTCTCATTTGAGGATTTCTTAAAGAT
66 ATTCTC-ATTTGAAGATTTCTTAAAGATTCTCATTTGAAGATTTCTTAAAGAT
* * * * *
7424734 TCTTATTTAAGACTTAAAGATTCTCATTT-GAGTATTTCTTAAAGATTCTCATTTAAGACTAAAA
1 TCTTATTTAAGACTCAAAGATTCTCATTTAAAG-ATTTTTTAAAGATTCTCATTTAAAACTCAAA
* * * * ** *
7424798 AATTCTCATTTG-AGA---CTAAAAAATTCTCATTTGAAAACGTCTTAATGAT
65 GATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTGAAGATTTCTTAAAGAT
7424847 T-TTCATTTAAGACTCAAAGATTCTCATTTAAA
1 TCTT-ATTTAAGACTCAAAGATTCTCATTTAAA
7424879 AACATCTTAA
Statistics
Matches: 232, Mismatches: 24, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
112 2 0.01
113 52 0.22
114 1 0.00
116 6 0.03
117 122 0.53
118 49 0.21
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.42
Consensus pattern (117 bp):
TCTTATTTAAGACTCAAAGATTCTCATTTAAAGATTTTTTAAAGATTCTCATTTAAAACTCAAAG
ATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTGAAGATTTCTTAAAGAT
Found at i:7424830 original size:21 final size:21
Alignment explanation
Indices: 7424732--7424831 Score: 101
Period size: 21 Copynumber: 4.6 Consensus size: 21
7424722 TTTCTTAAAG
* * * *
7424732 ATTCTTATTTAAGACTTAAAG
1 ATTCTCATTTGAGACTAAAAA
* *
7424753 ATTCTCATTTGAGTATTTCTTAAAG
1 ATTCTCATTTGAG-A---CTAAAAA
*
7424778 ATTCTCATTTAAGACTAAAAA
1 ATTCTCATTTGAGACTAAAAA
7424799 ATTCTCATTTGAGACTAAAAA
1 ATTCTCATTTGAGACTAAAAA
7424820 ATTCTCATTTGA
1 ATTCTCATTTGA
7424832 AAACGTCTTA
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
21 48 0.70
22 1 0.01
24 1 0.01
25 19 0.28
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (21 bp):
ATTCTCATTTGAGACTAAAAA
Found at i:7424841 original size:67 final size:67
Alignment explanation
Indices: 7424657--7424877 Score: 210
Period size: 67 Copynumber: 3.2 Consensus size: 67
7424647 AAGATTTTTT
* * * * ** *
7424657 AAAGATTCTCATTTAATACTCAAAGATTC-CTATTTGAAGATTTCTTAAAGATTCTCATTTGAGG
1 AAAGATTCTCATTTAAGACTAAAAAATTCTC-ATTTGAAAACGTCTTAAAGATTCTCATTT-AAG
*
7424721 ATTTCTT
64 A---CTA
* * * ** **
7424728 AAAGATTCTTATTTAAGACTTAAAGATTCTCATTTGAGTATTTCTTAAAGATTCTCATTTAAGAC
1 AAAGATTCTCATTTAAGACTAAAAAATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAGAC
7424793 TA
66 TA
* * * *
7424795 AAAAATTCTCATTTGAGACTAAAAAATTCTCATTTGAAAACGTCTTAATGATTTTCATTTAAGAC
1 AAAGATTCTCATTTAAGACTAAAAAATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAGAC
*
7424860 TC
66 TA
7424862 AAAGATTCTCATTTAA
1 AAAGATTCTCATTTAA
7424878 AAACATCTTA
Statistics
Matches: 128, Mismatches: 21, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
67 71 0.55
70 3 0.02
71 53 0.41
72 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (67 bp):
AAAGATTCTCATTTAAGACTAAAAAATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAGAC
TA
Found at i:7424893 original size:25 final size:24
Alignment explanation
Indices: 7424531--7424877 Score: 268
Period size: 25 Copynumber: 15.0 Consensus size: 24
7424521 CTCATTCGAG
*
7424531 GATTTTTTAAAGATTCTCATTTAA
1 GATTTCTTAAAGATTCTCATTTAA
* *
7424555 GA--ACTCAAAGATTCTCATTTGAA
1 GATTTCTTAAAGATTCTCATTT-AA
*
7424578 GATTTCTTAAAGATTTTCATTTGAA
1 GATTTCTTAAAGATTCTCATTT-AA
*
7424603 GATTTCTTAAAGATTCTTATTTAA
1 GATTTCTTAAAGATTCTCATTTAA
*
7424627 GA-ATC--AAAGATTCTCATTTAAA
1 GATTTCTTAAAGATTCTCATTT-AA
*
7424649 GATTTTTTAAAGATTCTCATTT-A
1 GATTTCTTAAAGATTCTCATTTAA
* *
7424672 -A-TACTCAAAGATTC-CTATTTGAA
1 GATTTCTTAAAGATTCTC-ATTT-AA
*
7424695 GATTTCTTAAAGATTCTCATTTGAG
1 GATTTCTTAAAGATTCTCATTT-AA
*
7424720 GATTTCTTAAAGATTCTTATTTAA
1 GATTTCTTAAAGATTCTCATTTAA
*
7424744 GA---CTTAAAGATTCTCATTTGA
1 GATTTCTTAAAGATTCTCATTTAA
7424765 GTATTTCTTAAAGATTCTCATTTAA
1 G-ATTTCTTAAAGATTCTCATTTAA
* * *
7424790 GA---CTAAAAAATTCTCATTTGA
1 GATTTCTTAAAGATTCTCATTTAA
* *
7424811 GA---CTAAAAAATTCTCATTTGAA
1 GATTTCTTAAAGATTCTCATTT-AA
* ** * *
7424833 AACGTCTTAATGATTTTCATTTAA
1 GATTTCTTAAAGATTCTCATTTAA
*
7424857 GA---CTCAAAGATTCTCATTTAA
1 GATTTCTTAAAGATTCTCATTTAA
7424878 AAACATCTTA
Statistics
Matches: 266, Mismatches: 36, Indels: 45
0.77 0.10 0.13
Matches are distributed among these distances:
20 1 0.00
21 96 0.36
22 23 0.09
23 9 0.03
24 14 0.05
25 122 0.46
26 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (24 bp):
GATTTCTTAAAGATTCTCATTTAA
Found at i:7426207 original size:37 final size:37
Alignment explanation
Indices: 7426165--7426237 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
7426155 CCTTTTCTCT
*
7426165 TTTTTTTTCCATTTTTTCATTTTTTTCTCTTTTTTTAC
1 TTTTTTCTCCATTTTTTC-TTTTTTTCTCTTTTTTTAC
***
7426203 TTTTTTCTTTTTTTTTTCTTTTTTTCTCTTTTTTT
1 TTTTTTCTCCATTTTTTCTTTTTTTCTCTTTTTTT
7426238 TATCCATTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 17 0.55
38 14 0.45
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (37 bp):
TTTTTTCTCCATTTTTTCTTTTTTTCTCTTTTTTTAC
Found at i:7426208 original size:11 final size:10
Alignment explanation
Indices: 7426157--7426238 Score: 64
Period size: 9 Copynumber: 8.5 Consensus size: 10
7426147 TAAGTATTCC
*
7426157 TTTTCTCTTT
1 TTTTTTCTTT
**
7426167 TTTTTTC-CA
1 TTTTTTCTTT
*
7426176 TTTTTTC-AT
1 TTTTTTCTTT
7426185 TTTTTTCTCTT
1 TTTTTTCT-TT
*
7426196 TTTTTAC-TT
1 TTTTTTCTTT
*
7426205 TTTTCT-TTT
1 TTTTTTCTTT
7426214 TTTTTTCTTT
1 TTTTTTCTTT
*
7426224 TTTTCTCTTT
1 TTTTTTCTTT
7426234 TTTTT
1 TTTTT
7426239 ATCCATTAGT
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
9 27 0.48
10 22 0.39
11 7 0.12
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:7426237 original size:18 final size:18
Alignment explanation
Indices: 7426166--7426237 Score: 85
Period size: 18 Copynumber: 3.9 Consensus size: 18
7426156 CTTTTCTCTT
*
7426166 TTTTTTTC-CATTTTTTC
1 TTTTTTTCTCTTTTTTTC
7426183 ATTTTTTTCTCTTTTTTTAC
1 -TTTTTTTCTCTTTTTTT-C
*
7426203 -TTTTTTCTTTTTTTTTTC
1 TTTTTTTC-TCTTTTTTTC
7426221 TTTTTTTCTCTTTTTTT
1 TTTTTTTCTCTTTTTTT
7426238 TATCCATTAG
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
18 24 0.51
19 22 0.47
20 1 0.02
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTTCTCTTTTTTTC
Found at i:7426238 original size:19 final size:19
Alignment explanation
Indices: 7426157--7426238 Score: 94
Period size: 19 Copynumber: 4.3 Consensus size: 19
7426147 TAAGTATTCC
* * **
7426157 TTTTCTCTTTTTTTTTCCA
1 TTTTTTCTTTTTTTCTCTT
7426176 TTTTTTCATTTTTTTCTCTT
1 TTTTTTC-TTTTTTTCTCTT
* *
7426196 TTTTTAC-TTTTTTCTTTT
1 TTTTTTCTTTTTTTCTCTT
7426214 TTTTTTCTTTTTTTCTCTT
1 TTTTTTCTTTTTTTCTCTT
7426233 TTTTTT
1 TTTTTT
7426239 ATCCATTAGT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
18 16 0.30
19 22 0.42
20 15 0.28
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTTCTTTTTTTCTCTT
Found at i:7426616 original size:7 final size:7
Alignment explanation
Indices: 7426604--7426641 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
7426594 TGGAATTCAT
7426604 TTTTTTC
1 TTTTTTC
*
7426611 TTTTTTT
1 TTTTTTC
7426618 TTTCTTTC
1 TTT-TTTC
7426626 TTTTTTC
1 TTTTTTC
7426633 -TTTTTC
1 TTTTTTC
7426639 TTT
1 TTT
7426642 CTATGTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 6 0.22
7 15 0.56
8 6 0.22
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTTC
Found at i:7426619 original size:11 final size:11
Alignment explanation
Indices: 7426603--7426637 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
7426593 ATGGAATTCA
7426603 TTTTTTTCTTT
1 TTTTTTTCTTT
7426614 TTTTTTTCTTT
1 TTTTTTTCTTT
*
7426625 CTTTTTTCTTT
1 TTTTTTTCTTT
7426636 TT
1 TT
7426638 CTTTCTATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:7426636 original size:17 final size:16
Alignment explanation
Indices: 7426603--7426643 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
7426593 ATGGAATTCA
7426603 TTTT-TTTC-TTTTTT
1 TTTTCTTTCTTTTTTT
7426617 TTTTCTTTCTTTTTTCT
1 TTTTCTTTCTTTTTT-T
7426634 TTTTCTTTCT
1 TTTTCTTTCT
7426644 ATGTTTGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.17
15 4 0.17
16 5 0.21
17 11 0.46
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTCTTTCTTTTTTT
Found at i:7429131 original size:111 final size:111
Alignment explanation
Indices: 7428991--7429194 Score: 320
Period size: 110 Copynumber: 1.8 Consensus size: 111
7428981 GAAATCTAAT
* *
7428991 ATGAAAATGATGTAAGATGCATAATGTTACATATGATAATAAAAATGATGTATGACATGATAATG
1 ATGAAAATGATGTAAGATGCATAATGTTACATATGACAAT-AAAATGATGTATGACATGATAAGG
*
7429056 CAAATGCACAAAGTTAAACAAATAAAATAATTAATTTTATGGATGAA
65 CAAATGCACAAAGTCAAACAAATAAAATAATTAATTTTATGGATGAA
* * * *
7429103 ATGAAAGTGATGT-AGATGCTTGATGTTACATATGACAATGAAATGATGTATGACATGATAAGGC
1 ATGAAAATGATGTAAGATGCATAATGTTACATATGACAATAAAATGATGTATGACATGATAAGGC
*
7429167 AAATGCATAAAGTCAAACAAATAAAATA
66 AAATGCACAAAGTCAAACAAATAAAATA
7429195 GTTAGATCAC
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
110 49 0.58
111 23 0.27
112 12 0.14
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (111 bp):
ATGAAAATGATGTAAGATGCATAATGTTACATATGACAATAAAATGATGTATGACATGATAAGGC
AAATGCACAAAGTCAAACAAATAAAATAATTAATTTTATGGATGAA
Found at i:7431735 original size:16 final size:16
Alignment explanation
Indices: 7431714--7431749 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
7431704 ACCTCCCTAG
7431714 AATTTTTTTAATTTTT
1 AATTTTTTTAATTTTT
*
7431730 AATTTTTTTATTTTTT
1 AATTTTTTTAATTTTT
7431746 AATT
1 AATT
7431750 AATAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
AATTTTTTTAATTTTT
Found at i:7431736 original size:8 final size:8
Alignment explanation
Indices: 7431717--7431749 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
7431707 TCCCTAGAAT
7431717 TTTTTTAA
1 TTTTTTAA
7431725 -TTTTTAA
1 TTTTTTAA
*
7431732 TTTTTTTA
1 TTTTTTAA
7431740 TTTTTTAA
1 TTTTTTAA
7431748 TT
1 TT
7431750 AATAAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTTAA
Found at i:7434769 original size:22 final size:22
Alignment explanation
Indices: 7434744--7434786 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7434734 AACATAAAAT
*
7434744 ATATTTTTTAGTTTTT-TTAAAC
1 ATATTTATT-GTTTTTATTAAAC
7434766 ATATTTATTGTTTTTATTAAA
1 ATATTTATTGTTTTTATTAAA
7434787 ATTTTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (22 bp):
ATATTTATTGTTTTTATTAAAC
Found at i:7438358 original size:32 final size:33
Alignment explanation
Indices: 7438317--7438394 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 33
7438307 AAAAAATATT
*
7438317 TTTTATTATAATAAAAAAAACTCA-TTTATTTTA
1 TTTT-TTATAATAAAAAAAACCCATTTTATTTTA
* * * *
7438350 TTTTTTATAATGAATAAGACCCATTTTGTTTTA
1 TTTTTTATAATAAAAAAAACCCATTTTATTTTA
*
7438383 TTATTTATAATA
1 TTTTTTATAATA
7438395 TAATAAAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
32 15 0.41
33 22 0.59
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.51
Consensus pattern (33 bp):
TTTTTTATAATAAAAAAAACCCATTTTATTTTA
Found at i:7439825 original size:6 final size:6
Alignment explanation
Indices: 7439814--7439839 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7439804 GGCAATATGT
7439814 AAACAA AAACAA AAACAA AAACAA AA
1 AAACAA AAACAA AAACAA AAACAA AA
7439840 TAATGGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (6 bp):
AAACAA
Found at i:7443948 original size:53 final size:53
Alignment explanation
Indices: 7443873--7443977 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 53
7443863 CTGTTGTACA
* *
7443873 TTGTCTATAATTTGAACGTTTTTCACCAGAAGTTATTGGTTAAAATCAAACTT
1 TTGTCTATAATTTGAACGTTTTTCAACAGAAGTAATTGGTTAAAATCAAACTT
* * * ** *
7443926 TTGTCTATAGTTTTAACTTTTTTCAATTGTAGTAATTGGTTAAAATCAAACT
1 TTGTCTATAATTTGAACGTTTTTCAACAGAAGTAATTGGTTAAAATCAAACT
7443978 AGGACTATTT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.45
Consensus pattern (53 bp):
TTGTCTATAATTTGAACGTTTTTCAACAGAAGTAATTGGTTAAAATCAAACTT
Found at i:7464835 original size:2 final size:2
Alignment explanation
Indices: 7464828--7464870 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
7464818 GTCTTAAAAG
7464828 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7464870 T
1 T
7464871 TCTTATATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:7471811 original size:16 final size:16
Alignment explanation
Indices: 7471778--7471836 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
7471768 ATCAAAAATG
* **
7471778 AAAAAGAAAATATGAA
1 AAAAAGAAAAAAAAAA
7471794 AAAAAGAAAAAAAAAA
1 AAAAAGAAAAAAAAAA
7471810 AAAAATGAAGAAAATAAAA
1 AAAAA-GAA-AAAA-AAAA
*
7471829 AGAAAGAA
1 AAAAAGAA
7471837 TTGATTAAGG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
16 18 0.50
17 3 0.08
18 7 0.19
19 8 0.22
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (16 bp):
AAAAAGAAAAAAAAAA
Found at i:7471812 original size:25 final size:25
Alignment explanation
Indices: 7471778--7471829 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
7471768 ATCAAAAATG
* *
7471778 AAAAAGAAAATATGAAAAAAAGAAA
1 AAAAAAAAAAAATGAAAAAAAGAAA
* *
7471803 AAAAAAAAAAAATGAAGAAAATAAA
1 AAAAAAAAAAAATGAAAAAAAGAAA
7471828 AA
1 AA
7471830 GAAAGAATTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.08
Consensus pattern (25 bp):
AAAAAAAAAAAATGAAAAAAAGAAA
Found at i:7473324 original size:22 final size:22
Alignment explanation
Indices: 7473298--7473398 Score: 82
Period size: 21 Copynumber: 4.6 Consensus size: 22
7473288 TTTGTATGCA
* *
7473298 AATATCTAAATTTTCATATATG
1 AATATTTAAATTTTCAGATATG
* * *
7473320 AATATTTGAA-TTTCAGATGTA
1 AATATTTAAATTTTCAGATATG
* * *
7473341 AATCTTTAAAGTTTTTCAAATGTG
1 AATATTTAAA--TTTTCAGATATG
7473365 AAT-TTTAAATTTT-AGATATG
1 AATATTTAAATTTTCAGATATG
*
7473385 AATATCTAAATTTT
1 AATATTTAAATTTT
7473399 GTTGAATGTG
Statistics
Matches: 63, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
20 8 0.13
21 29 0.46
22 8 0.13
23 6 0.10
24 12 0.19
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.47
Consensus pattern (22 bp):
AATATTTAAATTTTCAGATATG
Found at i:7473363 original size:24 final size:22
Alignment explanation
Indices: 7473330--7473377 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 22
7473320 AATATTTGAA
*
7473330 TTTCAGATGTAAATCTTTAAAGTT
1 TTTCAAATGTAAAT-TTTAAA-TT
*
7473354 TTTCAAATGTGAATTTTAAATT
1 TTTCAAATGTAAATTTTAAATT
7473376 TT
1 TT
7473378 AGATATGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 4 0.18
23 6 0.27
24 12 0.55
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.50
Consensus pattern (22 bp):
TTTCAAATGTAAATTTTAAATT
Found at i:7473533 original size:21 final size:21
Alignment explanation
Indices: 7473509--7473550 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7473499 AATGTGAATT
7473509 TTTTCAATGAGAATCTTTAAA
1 TTTTCAATGAGAATCTTTAAA
* *
7473530 TTTTGAATGTGAATCTTTAAA
1 TTTTCAATGAGAATCTTTAAA
7473551 ATATTTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.45
Consensus pattern (21 bp):
TTTTCAATGAGAATCTTTAAA
Found at i:7473820 original size:18 final size:18
Alignment explanation
Indices: 7473799--7473922 Score: 83
Period size: 18 Copynumber: 6.9 Consensus size: 18
7473789 CTTACTAATG
7473799 TTTGAACTCTTGCAAATC
1 TTTGAACTCTTGCAAATC
** *
7473817 TTTGATTTCTTACAAATC
1 TTTGAACTCTTGCAAATC
* *
7473835 TTTGATCT-TTTCAAATC
1 TTTGAACTCTTGCAAATC
* ** *
7473852 TATGATTTCTTGCTAATC
1 TTTGAACTCTTGCAAATC
* *
7473870 TTTAAACTCTTATG-AATTC
1 TTTGAACTC-T-TGCAAATC
**
7473889 -TTGAACTCTTGCAAGCC
1 TTTGAACTCTTGCAAATC
*
7473906 TTTGAATTCTTGCAAAT
1 TTTGAACTCTTGCAAAT
7473923 TTTATTTTTG
Statistics
Matches: 80, Mismatches: 21, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
16 2 0.03
17 18 0.22
18 54 0.68
19 4 0.05
20 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.10, T:0.45
Consensus pattern (18 bp):
TTTGAACTCTTGCAAATC
Found at i:7473851 original size:17 final size:18
Alignment explanation
Indices: 7473777--7473872 Score: 79
Period size: 18 Copynumber: 5.4 Consensus size: 18
7473767 AACTTTTATG
* * *
7473777 AATCTCTGATCTCTTACT
1 AATCTTTGATTTCTTACA
* ** *
7473795 AATGTTTGAACTCTTGCA
1 AATCTTTGATTTCTTACA
7473813 AATCTTTGATTTCTTACA
1 AATCTTTGATTTCTTACA
7473831 AATCTTTGATCTT-TT-CA
1 AATCTTTGAT-TTCTTACA
* * *
7473848 AATCTATGATTTCTTGCT
1 AATCTTTGATTTCTTACA
7473866 AATCTTT
1 AATCTTT
7473873 AAACTCTTAT
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
16 2 0.03
17 13 0.21
18 46 0.73
19 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48
Consensus pattern (18 bp):
AATCTTTGATTTCTTACA
Found at i:7473858 original size:35 final size:36
Alignment explanation
Indices: 7473777--7473880 Score: 120
Period size: 35 Copynumber: 2.9 Consensus size: 36
7473767 AACTTTTATG
* * *
7473777 AATCTCTGATCTCTTACTAATGTTTGAACTCTTGCA
1 AATCTATGATTTCTTACTAATCTTTGAACTCTTGCA
* * * *
7473813 AATCTTTGATTTCTTACAAATCTTTGATCT-TTTCA
1 AATCTATGATTTCTTACTAATCTTTGAACTCTTGCA
* *
7473848 AATCTATGATTTCTTGCTAATCTTTAAACTCTT
1 AATCTATGATTTCTTACTAATCTTTGAACTCTT
7473881 ATGAATTCTT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
35 29 0.52
36 27 0.48
ACGTcount: A:0.26, C:0.19, G:0.08, T:0.47
Consensus pattern (36 bp):
AATCTATGATTTCTTACTAATCTTTGAACTCTTGCA
Found at i:7474548 original size:25 final size:24
Alignment explanation
Indices: 7474507--7474553 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
7474497 TGTTATTTGG
7474507 TAAAAAAATATCAATTTTGATTTTT
1 TAAAAAAATATCAATTTT-ATTTTT
*
7474532 TAAAAAAATTAT-GATTTTATTT
1 TAAAAAAA-TATCAATTTTATTT
7474554 AGATTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 4 0.20
25 13 0.65
26 3 0.15
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (24 bp):
TAAAAAAATATCAATTTTATTTTT
Found at i:7475626 original size:20 final size:22
Alignment explanation
Indices: 7475601--7475640 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7475591 AATTAATTTT
7475601 TAAATC-TAA-TTTTATTAATA
1 TAAATCATAACTTTTATTAATA
*
7475621 TAAATCATAACTTTTTTTAA
1 TAAATCATAACTTTTATTAA
7475641 AAAAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 3 0.18
22 8 0.47
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.50
Consensus pattern (22 bp):
TAAATCATAACTTTTATTAATA
Found at i:7476847 original size:5 final size:5
Alignment explanation
Indices: 7476837--7476862 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7476827 GTAATATCAG
7476837 TAAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA T
7476863 TTGAGTACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:7479094 original size:26 final size:27
Alignment explanation
Indices: 7479043--7479094 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
7479033 TATTAAAATC
*
7479043 ATAAGAAAAGTAAAAAGATTATATTAT
1 ATAAGAAAAGTAAAAAGATTAAATTAT
*
7479070 ATAA-AAAATTAAAAA-ATATAAATTA
1 ATAAGAAAAGTAAAAAGAT-TAAATTA
7479095 GTTTTTAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 2 0.09
26 16 0.73
27 4 0.18
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (27 bp):
ATAAGAAAAGTAAAAAGATTAAATTAT
Found at i:7482344 original size:21 final size:21
Alignment explanation
Indices: 7482318--7482357 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7482308 CGTAGACTTT
7482318 GAAAAA-AATGACTTGAAAGTG
1 GAAAAACAATG-CTTGAAAGTG
*
7482339 GAAAAACATTGCTTGAAAG
1 GAAAAACAATGCTTGAAAG
7482358 GGGATAGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.20
Consensus pattern (21 bp):
GAAAAACAATGCTTGAAAGTG
Found at i:7482623 original size:2 final size:2
Alignment explanation
Indices: 7482616--7482643 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7482606 TCGTTGGTAC
7482616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7482644 GGACTCAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7482906 original size:1 final size:1
Alignment explanation
Indices: 7482900--7482925 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
7482890 CATTCCACAG
7482900 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
7482926 CGCAATACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7485228 original size:25 final size:28
Alignment explanation
Indices: 7485200--7485264 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 28
7485190 GAGTAAAAAC
7485200 AATAAATATAAAAAGATT-TATA-T-TT
1 AATAAATATAAAAAGATTATATATTATT
** * *
7485225 AATATGTATATAAATATTATATATTATT
1 AATAAATATAAAAAGATTATATATTATT
*
7485253 AATAAATTTAAA
1 AATAAATATAAA
7485265 TATTAATTTT
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
25 14 0.48
26 4 0.14
27 1 0.03
28 10 0.34
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (28 bp):
AATAAATATAAAAAGATTATATATTATT
Found at i:7488261 original size:31 final size:30
Alignment explanation
Indices: 7488210--7488285 Score: 100
Period size: 30 Copynumber: 2.5 Consensus size: 30
7488200 AAATTATATT
* *
7488210 TTTTAGAATTTTTTATAATTTTTAAAACAA
1 TTTTAAAATTTTTTATAATTTTTAAAAAAA
*
7488240 TTTTAAAATTTTTTTTGAATTTTTAAAAAAA
1 TTTTAAAATTTTTTAT-AATTTTTAAAAAAA
*
7488271 TTTT-AGATTTTTTAT
1 TTTTAAAATTTTTTAT
7488286 TTTTATTGGA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 23 0.57
31 17 0.43
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (30 bp):
TTTTAAAATTTTTTATAATTTTTAAAAAAA
Found at i:7488334 original size:9 final size:10
Alignment explanation
Indices: 7488320--7488373 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
7488310 AAAAAAACTA
7488320 TTTTAG-AAT
1 TTTTAGAAAT
*
7488329 TTTTAGAAAAA
1 TTTTAG-AAAT
7488340 TTTTAGAAAT
1 TTTTAGAAAT
*
7488350 TTTTAGAATT
1 TTTTAGAAAT
7488360 TCTTTA-AAAT
1 T-TTTAGAAAT
7488370 TTTT
1 TTTT
7488374 TTTTTTTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
9 9 0.24
10 17 0.45
11 12 0.32
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (10 bp):
TTTTAGAAAT
Found at i:7488352 original size:21 final size:20
Alignment explanation
Indices: 7488319--7488357 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
7488309 AAAAAAAACT
7488319 ATTTTAGAATTTTTAGAAAA
1 ATTTTAGAATTTTTAGAAAA
7488339 ATTTTAGAAATTTTTAGAA
1 ATTTTAG-AATTTTTAGAA
7488358 TTTCTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (20 bp):
ATTTTAGAATTTTTAGAAAA
Found at i:7488394 original size:16 final size:17
Alignment explanation
Indices: 7488362--7488394 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7488352 TTAGAATTTC
*
7488362 TTTAAAATTTTTTTTTT
1 TTTAAAATTTTTCTTTT
7488379 TTTAAAA-TTTTCTTTT
1 TTTAAAATTTTTCTTTT
7488395 AAAGATGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTAAAATTTTTCTTTT
Found at i:7491323 original size:104 final size:104
Alignment explanation
Indices: 7491143--7491351 Score: 409
Period size: 104 Copynumber: 2.0 Consensus size: 104
7491133 TGAGAAAAAA
*
7491143 AAAAAAAAAAACATAGGACTCCATTTAATTTGGTCTCCCTTTTGTCTAAATGGAAAGGAATCCAA
1 AAAAAAAAAAACATAGGACTCCATTTAATTTGGTCTCCCTTTTGTCTAAATGGAAAGGAATCAAA
7491208 AAAGGCTTATCAGCTCAATTATAACATCTTTGTCTCACG
66 AAAGGCTTATCAGCTCAATTATAACATCTTTGTCTCACG
7491247 AAAAAAAAAAACATAGGACTCCATTTAATTTGGTCTCCCTTTTGTCTAAATGGAAAGGAATCAAA
1 AAAAAAAAAAACATAGGACTCCATTTAATTTGGTCTCCCTTTTGTCTAAATGGAAAGGAATCAAA
7491312 AAAGGCTTATCAGCTCAATTATAACATCTTTGTCTCACG
66 AAAGGCTTATCAGCTCAATTATAACATCTTTGTCTCACG
7491351 A
1 A
7491352 TTGGATTAGA
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 104 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (104 bp):
AAAAAAAAAAACATAGGACTCCATTTAATTTGGTCTCCCTTTTGTCTAAATGGAAAGGAATCAAA
AAAGGCTTATCAGCTCAATTATAACATCTTTGTCTCACG
Found at i:7494116 original size:3 final size:3
Alignment explanation
Indices: 7494108--7494146 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
7494098 GCTACAATGA
*
7494108 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7494147 TTTTTTTCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:7494710 original size:12 final size:11
Alignment explanation
Indices: 7494680--7494709 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7494670 GATTGAAAAT
7494680 AATTTTTTAGG
1 AATTTTTTAGG
*
7494691 TATTTTTTAGG
1 AATTTTTTAGG
7494702 AATTTTTT
1 AATTTTTT
7494710 TGACACACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.63
Consensus pattern (11 bp):
AATTTTTTAGG
Found at i:7502055 original size:12 final size:12
Alignment explanation
Indices: 7502013--7502055 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
7502003 TTTTTTTTCC
*
7502013 TTTTTTCTTTTT
1 TTTTTTCATTTT
7502025 TTCTTTTCATTTT
1 TT-TTTTCATTTT
**
7502038 CATTTTCATTTT
1 TTTTTTCATTTT
7502050 TTTTTT
1 TTTTTT
7502056 TCTTCTCATT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
12 16 0.64
13 9 0.36
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTTTTCATTTT
Found at i:7512544 original size:58 final size:58
Alignment explanation
Indices: 7512454--7512739 Score: 405
Period size: 58 Copynumber: 4.9 Consensus size: 58
7512444 CTTTGAAAAA
* * * *
7512454 TTATTTTTAAGAAAAATCGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGT
1 TTATTTTCAAGGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGC
* *
7512512 TTATTTTCAAGGAAAATTGATACTTTCAACTTTTC-CTCAAAATTATTTTTTTTAGAAAAAC
1 TTATTTTCAAGGAAAATTGATACTTTCAACTTTTCTC-CAAAA--ATATTTTTTAG-AAAGC
* * *
7512573 TTATTTTCAAGGAAAATCGATACTTTAAACTTTTCTCAAAAAATATTTTTTAGAAAGC
1 TTATTTTCAAGGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGC
*
7512631 TTATTTTCAAGAAAAATTGATACTTTCAACTTTT-TCTCAAAAATATTTTTTAGAAAGC
1 TTATTTTCAAGGAAAATTGATACTTTCAACTTTTCTC-CAAAAATATTTTTTAGAAAGC
* *
7512689 TTATTTTCAAGGAAAATTGATACTCTCAACTTTTCTTCAAAAATATTTTTT
1 TTATTTTCAAGGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTT
7512740 GAATTTTATT
Statistics
Matches: 203, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
57 3 0.01
58 138 0.68
59 11 0.05
60 10 0.05
61 40 0.20
62 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (58 bp):
TTATTTTCAAGGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGC
Found at i:7512590 original size:119 final size:117
Alignment explanation
Indices: 7512448--7512759 Score: 447
Period size: 119 Copynumber: 2.7 Consensus size: 117
7512438 TGAAAACTTT
* *
7512448 GAAAAA-TTATTTTTAAGAAAAATCGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGT
1 GAAAAACTTATTTTCAAGGAAAATCGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGT
*
7512512 TTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAATTATTTTTTTTA
66 TTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAA--ATATTTTTTA
* * *
7512566 GAAAAACTTATTTTCAAGGAAAATCGATACTTTAAACTTTTCTCAAAAAATATTTTTTAGAAAGC
1 GAAAAACTTATTTTCAAGGAAAATCGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGT
* *
7512631 TTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTA
66 TTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTA
* * * * *
7512683 G-AAAGCTTATTTTCAAGGAAAATTGATACTCTCAACTTTTCTTCAAAAATATTTTTT-G-AATT
1 GAAAAACTTATTTTCAAGGAAAATCGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGT
7512745 TTA-TTTCAA-GAAAAT
66 TTATTTTCAAGGAAAAT
7512760 AAAATAAATA
Statistics
Matches: 176, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
112 5 0.03
113 6 0.03
114 5 0.03
115 1 0.01
116 50 0.28
117 10 0.06
118 6 0.03
119 93 0.53
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.42
Consensus pattern (117 bp):
GAAAAACTTATTTTCAAGGAAAATCGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGT
TTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTA
Found at i:7512603 original size:30 final size:27
Alignment explanation
Indices: 7512569--7512670 Score: 64
Period size: 29 Copynumber: 3.5 Consensus size: 27
7512559 TTTTTTAGAA
7512569 AAACTTATTTTCAAGGAAAATCGATACTTT
1 AAACTT-TTTTCAA-GAAAAT-GATACTTT
* **
7512599 AAACTTTTCTCAA-AAAAT-ATTTTTT
1 AAACTTTTTTCAAGAAAATGATACTTT
7512624 AGAAAGCTTATTTTCAAGAAAAATTGATACTTT
1 --AAA-CTT-TTTTCAAG-AAAA-TGATACTTT
*
7512657 CAACTTTTTCTCAA
1 AAACTTTTT-TCAA
7512671 AAATATTTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 18
0.69 0.09 0.22
Matches are distributed among these distances:
25 5 0.09
27 8 0.14
28 3 0.05
29 15 0.27
30 13 0.23
31 6 0.11
32 1 0.02
33 5 0.09
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (27 bp):
AAACTTTTTTCAAGAAAATGATACTTT
Found at i:7512763 original size:5 final size:5
Alignment explanation
Indices: 7512755--7512793 Score: 62
Period size: 5 Copynumber: 7.8 Consensus size: 5
7512745 TTATTTCAAG
7512755 AAAAT AAAAT -AAAT AAAAT AAAAT AAAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAA
7512794 AGTATTAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.12
5 23 0.72
6 5 0.16
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7512770 original size:9 final size:9
Alignment explanation
Indices: 7512756--7512792 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
7512746 TATTTCAAGA
7512756 AAATAAAAT
1 AAATAAAAT
7512765 AAATAAAAT
1 AAATAAAAT
*
7512774 AAA-ATAA-
1 AAATAAAAT
7512781 AAATAAAAT
1 AAATAAAAT
7512790 AAA
1 AAA
7512793 AAGTATTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
7 3 0.12
8 6 0.25
9 15 0.62
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:7512794 original size:11 final size:10
Alignment explanation
Indices: 7512755--7512793 Score: 62
Period size: 11 Copynumber: 3.9 Consensus size: 10
7512745 TTATTTCAAG
7512755 AAAATAAAAT
1 AAAATAAAAT
7512765 -AAATAAAAT
1 AAAATAAAAT
7512774 AAAATAAAAAT
1 AAAAT-AAAAT
7512785 AAAATAAAA
1 AAAATAAAA
7512794 AGTATTAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 9 0.33
10 8 0.30
11 10 0.37
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:7513641 original size:3 final size:3
Alignment explanation
Indices: 7513633--7513746 Score: 50
Period size: 3 Copynumber: 33.7 Consensus size: 3
7513623 TAAATAGATA
* *
7513633 AAT AAT AAT AAT AAT CGAT AAAT AAT AAT AAAT AAT AGAT ATAT AAAC
1 AAT AAT AAT AAT AAT -AAT -AAT AAT AAT -AAT AAT A-AT A-AT -AAT
* * *
7513681 AGAT AAGT AAT AGT AA- AAT ATAT ATAT ATT AAT AAAT AGT AAT AAT
1 A-AT AA-T AAT AAT AAT AAT A-AT A-AT AAT AAT -AAT AAT AAT AAT
7513727 AGAT AAAT AAAT AAT AAT AA
1 A-AT -AAT -AAT AAT AAT AA
7513747 ATAAAATACA
Statistics
Matches: 88, Mismatches: 12, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
2 2 0.02
3 48 0.55
4 36 0.41
5 2 0.02
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7513654 original size:20 final size:21
Alignment explanation
Indices: 7513625--7513750 Score: 102
Period size: 21 Copynumber: 6.1 Consensus size: 21
7513615 ATAATATGTA
7513625 AATAGATAAATAATAAT-AAT
1 AATAGATAAATAATAATAAAT
*
7513645 AATCGATAAATAATAATAAAT
1 AATAGATAAATAATAATAAAT
* * *
7513666 AATAGATATATAAACAGATAAGT
1 AATAGATAAAT-AATA-ATAAAT
*
7513689 AATAG-T-AA-AATATATATAT
1 AATAGATAAATAATA-ATAAAT
* *
7513708 ATTA-ATAAATAGTAAT-AAT
1 AATAGATAAATAATAATAAAT
*
7513727 AGATAAATAAATAATAATAAAT
1 A-ATAGATAAATAATAATAAAT
7513749 AA
1 AA
7513751 AATACAAAAA
Statistics
Matches: 82, Mismatches: 15, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
19 14 0.17
20 22 0.27
21 28 0.34
22 8 0.10
23 10 0.12
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (21 bp):
AATAGATAAATAATAATAAAT
Found at i:7513663 original size:10 final size:10
Alignment explanation
Indices: 7513625--7513754 Score: 81
Period size: 10 Copynumber: 12.7 Consensus size: 10
7513615 ATAATATGTA
7513625 AATAGATAAAT
1 AATA-ATAAAT
7513636 AATAAT-AAT
1 AATAATAAAT
*
7513645 AATCGATAAAT
1 AAT-AATAAAT
7513656 AATAATAAAT
1 AATAATAAAT
*
7513666 AATAGATATAT
1 AATA-ATAAAT
* *
7513677 AAACAGATAAGT
1 -AATA-ATAAAT
*
7513689 AATAGT-AA-
1 AATAATAAAT
*
7513697 AATATATATAT
1 AATA-ATAAAT
*
7513708 ATTAATAAAT
1 AATAATAAAT
*
7513718 AGTAAT-AAT
1 AATAATAAAT
7513727 AGATAAATAAAT
1 A-AT-AATAAAT
7513739 AATAATAAAT
1 AATAATAAAT
7513749 AA-AATA
1 AATAATA
7513755 CAAAAATACA
Statistics
Matches: 94, Mismatches: 15, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
8 4 0.04
9 16 0.17
10 36 0.38
11 26 0.28
12 12 0.13
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (10 bp):
AATAATAAAT
Found at i:7513692 original size:33 final size:32
Alignment explanation
Indices: 7513625--7513747 Score: 94
Period size: 35 Copynumber: 3.7 Consensus size: 32
7513615 ATAATATGTA
* *
7513625 AATAGATAAATAATAATA-ATAATC-GATAAAT
1 AATA-ATAAATAATAATATATAAACAGATAAGT
7513656 AATAATAAATAATAGATATATAAACAGATAAGT
1 AATAATAAATAATA-ATATATAAACAGATAAGT
* *
7513689 AATAGTAAAATATATATATATTAATAAATAG-TAA-T
1 AATAAT-AAATA-ATA-ATA-T-ATAAACAGATAAGT
7513724 AATAGATAAATAAATAATA-ATAAA
1 AATA-ATAAAT-AATAATATATAAA
7513748 TAAAATACAA
Statistics
Matches: 77, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
30 10 0.13
31 12 0.16
32 5 0.06
33 11 0.14
34 8 0.10
35 18 0.23
36 6 0.08
37 7 0.09
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.30
Consensus pattern (32 bp):
AATAATAAATAATAATATATAAACAGATAAGT
Found at i:7513750 original size:35 final size:37
Alignment explanation
Indices: 7513659--7513751 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 37
7513649 GATAAATAAT
*
7513659 AATAAATAATAGATATATAAACAGATAAGTAATAGTA
1 AATAAATAATAGATAAATAAACAGATAAGTAATAGTA
* * * *
7513696 AA-ATATATATATATTAATAAATAG-TAA-TAATAGATA
1 AATAAATA-ATAGATAAATAAACAGATAAGTAATAG-TA
7513732 AATAAATAATA-ATAAATAAA
1 AATAAATAATAGATAAATAAA
7513752 ATACAAAAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
35 14 0.30
36 14 0.30
37 18 0.39
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.30
Consensus pattern (37 bp):
AATAAATAATAGATAAATAAACAGATAAGTAATAGTA
Found at i:7513759 original size:7 final size:7
Alignment explanation
Indices: 7513749--7513794 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
7513739 AATAATAAAT
7513749 AAAATAC
1 AAAATAC
7513756 AAAAATAC
1 -AAAATAC
*
7513764 AAAATAA
1 AAAATAC
7513771 AAAATAC
1 AAAATAC
7513778 AAAAT--
1 AAAATAC
7513783 AAAATA-
1 AAAATAC
7513789 AAAATA
1 AAAATA
7513795 AAACAAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 5 0.14
6 6 0.17
7 17 0.49
8 7 0.20
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAATAC
Found at i:7513775 original size:14 final size:14
Alignment explanation
Indices: 7513749--7513797 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
7513739 AATAATAAAT
7513749 AAAATACAAAAATAC
1 AAAATA-AAAAATAC
7513764 AAAATAAAAAATAC
1 AAAATAAAAAATAC
7513778 AAAAT--AAAATA-
1 AAAATAAAAAATAC
7513789 AAAATAAAA
1 AAAATAAAA
7513798 CAAAACTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
11 5 0.16
12 6 0.19
13 2 0.06
14 13 0.41
15 6 0.19
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAATAAAAAATAC
Found at i:7513783 original size:34 final size:35
Alignment explanation
Indices: 7513731--7513802 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
7513721 AATAATAGAT
* * *
7513731 AAATAAATAATAATAAATAAAATACAAA-AATACA
1 AAATAAAAAATAATAAATAAAATAAAAATAAAACA
7513765 AAATAAAAAATACA-AAATAAAATAAAAATAAAACA
1 AAATAAAAAATA-ATAAATAAAATAAAAATAAAACA
7513800 AAA
1 AAA
7513803 CTGAAAATGG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 24 0.73
35 9 0.27
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.17
Consensus pattern (35 bp):
AAATAAAAAATAATAAATAAAATAAAAATAAAACA
Found at i:7514928 original size:22 final size:22
Alignment explanation
Indices: 7514880--7514947 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
7514870 AAAAAGCTAG
*
7514880 TTTATTAATAT-ATAATAATATTA
1 TTTATTAATATAAT-ATTAT-TTA
* *
7514903 TTTATTAATGTAATGTTATTTA
1 TTTATTAATATAATATTATTTA
7514925 TTTATTAATATAATATTATTTA
1 TTTATTAATATAATATTATTTA
7514947 T
1 T
7514948 AAGTAAAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
22 24 0.62
23 13 0.33
24 2 0.05
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (22 bp):
TTTATTAATATAATATTATTTA
Found at i:7515100 original size:22 final size:22
Alignment explanation
Indices: 7515055--7515104 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
7515045 AAAAAAAAAT
*
7515055 TTATTTTTTATTGATCAATAAA
1 TTATTTTTTATTAATCAATAAA
* *
7515077 TTATTTTTTATTAATTAATTAA
1 TTATTTTTTATTAATCAATAAA
7515099 TT-TTTT
1 TTATTTT
7515105 ACTAAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (22 bp):
TTATTTTTTATTAATCAATAAA
Found at i:7515119 original size:18 final size:18
Alignment explanation
Indices: 7515071--7515119 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
7515061 TTTATTGATC
*
7515071 AATAAATTATTTTTTATTA
1 AATAAA-TATTTTTTACTA
* *
7515090 ATTAATTAATTTTTTACTA
1 AATAAAT-ATTTTTTACTA
7515109 AATAAATATTT
1 AATAAATATTT
7515120 AAAAATATGA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (18 bp):
AATAAATATTTTTTACTA
Found at i:7515148 original size:14 final size:14
Alignment explanation
Indices: 7515129--7515156 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7515119 TAAAAATATG
7515129 AAAATAATTTTTCA
1 AAAATAATTTTTCA
7515143 AAAATAATTTTTCA
1 AAAATAATTTTTCA
7515157 CGAAGGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
AAAATAATTTTTCA
Found at i:7519029 original size:22 final size:22
Alignment explanation
Indices: 7519001--7519044 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7518991 ATTTTCTGTC
7519001 CTTAATTCTAG-GTATACAAATA
1 CTTAATTCTAGAG-ATACAAATA
7519023 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7519045 TAAATATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:7523116 original size:31 final size:31
Alignment explanation
Indices: 7523068--7523127 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
7523058 TTTGTCCTTA
7523068 ATTCAAGGGATACAAATACTTAATTCTAGGG
1 ATTCAAGGGATACAAATACTTAATTCTAGGG
* *
7523099 ATTCTAGGGGTACAAATACTTAATTCTAG
1 ATTCAAGGGATACAAATACTTAATTCTAG
7523128 AGATACAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (31 bp):
ATTCAAGGGATACAAATACTTAATTCTAGGG
Found at i:7529402 original size:14 final size:14
Alignment explanation
Indices: 7529383--7529421 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
7529373 ACAGATATAT
7529383 ACAGATTACAATCA
1 ACAGATTACAATCA
7529397 ACAGATTACAATCA
1 ACAGATTACAATCA
7529411 ACAGATTACAA
1 ACAGATTACAA
7529422 AATACAACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.51, C:0.21, G:0.08, T:0.21
Consensus pattern (14 bp):
ACAGATTACAATCA
Found at i:7531327 original size:1 final size:1
Alignment explanation
Indices: 7531321--7531349 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
7531311 GGGAGAGTGA
7531321 GGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGG
7531350 AGAAAGATCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:7534286 original size:28 final size:28
Alignment explanation
Indices: 7534246--7534299 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
7534236 ATGGCGTGGA
7534246 AAAATTTCTCTTAGTGGTATTAGTTGGC
1 AAAATTTCTCTTAGTGGTATTAGTTGGC
7534274 AAAATTTCTCTTAGTGGTATTAGTTG
1 AAAATTTCTCTTAGTGGTATTAGTTG
7534300 ACAATAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.26, C:0.09, G:0.20, T:0.44
Consensus pattern (28 bp):
AAAATTTCTCTTAGTGGTATTAGTTGGC
Found at i:7534551 original size:22 final size:22
Alignment explanation
Indices: 7534523--7534566 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7534513 CTAAATCTTC
*
7534523 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7534545 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7534567 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:7537552 original size:61 final size:59
Alignment explanation
Indices: 7537453--7537568 Score: 137
Period size: 60 Copynumber: 1.9 Consensus size: 59
7537443 AAAATTGTAT
* *
7537453 TTTTTATCTTAAAAAATATATCTTTTCAAGAAAAATTATGTTTTTTATTTTAGAAATATCA
1 TTTTTATCTTAAAAAATATATCTTTT-AAGAAAAATTAT-ATTTCTATTTTAGAAATATCA
* *
7537514 TTTTTATCTT-AAAAATGTTGTCTTTT-AGATAAAGATTATATTTCTATTTTAGAAA
1 TTTTTATCTTAAAAAAT-ATATCTTTTAAGA-AAA-ATTATATTTCTATTTTAGAAA
7537569 CATCGTTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
59 3 0.06
60 23 0.48
61 22 0.46
ACGTcount: A:0.37, C:0.06, G:0.07, T:0.50
Consensus pattern (59 bp):
TTTTTATCTTAAAAAATATATCTTTTAAGAAAAATTATATTTCTATTTTAGAAATATCA
Found at i:7539685 original size:28 final size:29
Alignment explanation
Indices: 7539652--7539709 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
7539642 ATGTTGTGTG
* *
7539652 TTGTATTTTAATGTA-CATCACTAATATA
1 TTGTATTTTAATCTAGCATCACTAACATA
*
7539680 TTGTATTTTAATCTAGCATCATTAACATA
1 TTGTATTTTAATCTAGCATCACTAACATA
7539709 T
1 T
7539710 GCATTCATCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.47
Consensus pattern (29 bp):
TTGTATTTTAATCTAGCATCACTAACATA
Found at i:7541943 original size:4 final size:4
Alignment explanation
Indices: 7541926--7541973 Score: 53
Period size: 4 Copynumber: 12.0 Consensus size: 4
7541916 AAATATTTCC
* * *
7541926 AAAT AAAT ACAT AAAT -AAT CAAAT AAAT AAAC AAAC AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT
7541974 GGACAATTAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
3 3 0.08
4 32 0.84
5 3 0.08
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:7541955 original size:16 final size:16
Alignment explanation
Indices: 7541930--7541973 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
7541920 ATTTCCAAAT
* *
7541930 AAATACATAAATAATC
1 AAATAAATAAATAAAC
*
7541946 AAATAAATAAACAAAC
1 AAATAAATAAATAAAC
7541962 AAATAAATAAAT
1 AAATAAATAAAT
7541974 GGACAATTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.20
Consensus pattern (16 bp):
AAATAAATAAATAAAC
Found at i:7541979 original size:16 final size:16
Alignment explanation
Indices: 7541925--7541972 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
7541915 AAAATATTTC
* *
7541925 CAAATAAATACATAAA
1 CAAACAAATAAATAAA
* *
7541941 TAATCAAATAAATAAA
1 CAAACAAATAAATAAA
7541957 CAAACAAATAAATAAA
1 CAAACAAATAAATAAA
7541973 TGGACAATTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (16 bp):
CAAACAAATAAATAAA
Found at i:7542710 original size:38 final size:39
Alignment explanation
Indices: 7542668--7542753 Score: 140
Period size: 38 Copynumber: 2.3 Consensus size: 39
7542658 TGTAAAAAAA
7542668 ATTTTATTTTTAGAAA-TATCTTTCAATATGTTGGTAAG
1 ATTTTATTTTTAGAAATTATCTTTCAATATGTTGGTAAG
* *
7542706 ATTTT-TTGTTAGAAATTATCTTTCAATATGTTGGTAGG
1 ATTTTATTTTTAGAAATTATCTTTCAATATGTTGGTAAG
7542744 ATTTTATTTT
1 ATTTTATTTT
7542754 ATTTAAATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
37 9 0.21
38 31 0.72
39 3 0.07
ACGTcount: A:0.28, C:0.05, G:0.14, T:0.53
Consensus pattern (39 bp):
ATTTTATTTTTAGAAATTATCTTTCAATATGTTGGTAAG
Found at i:7542800 original size:4 final size:4
Alignment explanation
Indices: 7542791--7542854 Score: 58
Period size: 4 Copynumber: 15.8 Consensus size: 4
7542781 AAATATTTAC
* * * *
7542791 AAAT AAAT AAAT ACAT AAAT -AGT CAAAT AAAT AAAAT AAAC AAAT AAAC
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT -AAAT AAAT AAAT AAAT
*
7542840 AAAC AAAT AAAT AAA
1 AAAT AAAT AAAT AAA
7542855 ATAGTCAATT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
3 2 0.04
4 41 0.84
5 6 0.12
ACGTcount: A:0.72, C:0.08, G:0.02, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:7542973 original size:4 final size:4
Alignment explanation
Indices: 7542964--7543009 Score: 60
Period size: 4 Copynumber: 12.0 Consensus size: 4
7542954 GATTTTTGAT
* *
7542964 ATAA ATAA ATAA ATAA ATAA AT-A A-AA ATAA ACAA ATAA ATAG ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
7543010 TTATGTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
3 4 0.11
4 32 0.89
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (4 bp):
ATAA
Found at i:7542992 original size:22 final size:22
Alignment explanation
Indices: 7542966--7543009 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7542956 TTTTTGATAT
*
7542966 AAATAAATAAATAAATAAATAA
1 AAATAAACAAATAAATAAATAA
*
7542988 AAATAAACAAATAAATAGATAA
1 AAATAAACAAATAAATAAATAA
7543010 TTATGTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.20
Consensus pattern (22 bp):
AAATAAACAAATAAATAAATAA
Found at i:7542993 original size:18 final size:18
Alignment explanation
Indices: 7542970--7543004 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7542960 TGATATAAAT
*
7542970 AAATAAATAAATAAATAA
1 AAATAAACAAATAAATAA
7542988 AAATAAACAAATAAATA
1 AAATAAACAAATAAATA
7543005 GATAATTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (18 bp):
AAATAAACAAATAAATAA
Found at i:7545176 original size:24 final size:23
Alignment explanation
Indices: 7545135--7545179 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
7545125 GCTGGAGAAA
* *
7545135 GAAATAATAAAAAGAAGAAAAAT
1 GAAAAAATAAAAAAAAGAAAAAT
7545158 GAAAAAATGAAAAAAAAGAAAA
1 GAAAAAAT-AAAAAAAAGAAAA
7545180 GAAAAGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (23 bp):
GAAAAAATAAAAAAAAGAAAAAT
Found at i:7545188 original size:27 final size:27
Alignment explanation
Indices: 7545130--7545189 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
7545120 TAGGGGCTGG
*
7545130 AGAAAGAAATAATAAAAAGAAGAAAAA
1 AGAAAGAAATAAAAAAAAGAAGAAAAA
*
7545157 TGAAA-AAATGAAAAAAAAGAA-AAGAAA
1 AGAAAGAAAT-AAAAAAAAGAAGAA-AAA
7545184 AGAAAG
1 AGAAAG
7545190 TGTGGGTCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.07
Consensus pattern (27 bp):
AGAAAGAAATAAAAAAAAGAAGAAAAA
Found at i:7545882 original size:14 final size:15
Alignment explanation
Indices: 7545865--7545912 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
7545855 AATAATACCG
*
7545865 ATTTTATAAAAA-AT
1 ATTTTATAAAAATAA
*
7545879 ATTTTTTAAAAATAA
1 ATTTTATAAAAATAA
7545894 ATTTTA-AAAAATTAA
1 ATTTTATAAAAA-TAA
7545909 ATTT
1 ATTT
7545913 AAATATAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
14 16 0.55
15 13 0.45
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTTTATAAAAATAA
Found at i:7556810 original size:14 final size:15
Alignment explanation
Indices: 7556776--7556839 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 15
7556766 TCGAAAAGAT
7556776 TTTTTTATTTTACTATA
1 TTTTTTATTTTA-T-TA
7556793 TTTTTTATTTT-TTA
1 TTTTTTATTTTATTA
*
7556807 TTTTCTT-GTTT-TTA
1 TTTT-TTATTTTATTA
7556821 TTTTATTATTATTATTA
1 TTTT-TTATT-TTATTA
7556838 TT
1 TT
7556840 ATTCTTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 18 0.45
15 4 0.10
16 2 0.05
17 16 0.40
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTTTATTTTATTA
Found at i:7556839 original size:38 final size:39
Alignment explanation
Indices: 7556777--7556857 Score: 98
Period size: 38 Copynumber: 2.1 Consensus size: 39
7556767 CGAAAAGATT
7556777 TTTTTATTTTACTATATTTTTTATT-TT-TTATTTTCTTG
1 TTTTTATTTTACTATATTTTTTATTATTCTT-TTTTCTTG
*
7556815 TTTTTATTTTA-T-TATTATTATTATTATTCTTTTTTTTTG
1 TTTTTATTTTACTATATT-TT-TTATTATTCTTTTTTCTTG
7556854 TTTT
1 TTTT
7556858 CTAGAAAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
36 4 0.11
37 3 0.08
38 16 0.42
39 13 0.34
40 2 0.05
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (39 bp):
TTTTTATTTTACTATATTTTTTATTATTCTTTTTTCTTG
Found at i:7556996 original size:32 final size:34
Alignment explanation
Indices: 7556925--7557007 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 34
7556915 AATAAATAAC
*
7556925 AAATAAAAATCAATAAAATGAAATAAATAAAATTGA
1 AAATAAAAAT-AA-AAAATGAAATAAATAAAATTAA
* *
7556961 AAATCAAAATAAAAAAT-AAATAAA-ACAATTAA
1 AAATAAAAATAAAAAATGAAATAAATAAAATTAA
* *
7556993 AAATTAAAATTAAAA
1 AAATAAAAATAAAAA
7557008 TAGAAAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
32 19 0.45
33 7 0.17
34 5 0.12
35 2 0.05
36 9 0.21
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.22
Consensus pattern (34 bp):
AAATAAAAATAAAAAATGAAATAAATAAAATTAA
Found at i:7557824 original size:5 final size:5
Alignment explanation
Indices: 7557816--7557943 Score: 102
Period size: 5 Copynumber: 25.4 Consensus size: 5
7557806 AGAAAAAAAA
* * *
7557816 ATAAT ATAAT ACAAT ATAGT ATAAT ATAAT ATAAT ATAAT ATGAT AT-A-
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* * * * *
7557864 ATAAT AATAAT AGTAAT GTAAC ATACT ATAGT AATAAT ATACT ATAAT
1 ATAAT -ATAAT A-TAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT
*
7557912 AT-A- ATAAT ACAAT AGTAAT AATAAT ATAAT AT
1 ATAAT ATAAT ATAAT A-TAAT -ATAAT ATAAT AT
7557944 GATAATATGG
Statistics
Matches: 98, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
3 4 0.04
4 4 0.04
5 69 0.70
6 20 0.20
7 1 0.01
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (5 bp):
ATAAT
Found at i:7557826 original size:8 final size:8
Alignment explanation
Indices: 7557815--7558010 Score: 73
Period size: 8 Copynumber: 22.9 Consensus size: 8
7557805 AAGAAAAAAA
7557815 AATAATAT
1 AATAATAT
7557823 AATACAATAT
1 AAT--AATAT
7557833 AGTATAATAT
1 A--ATAATAT
7557843 AAT-ATA-
1 AATAATAT
7557849 ATATAATAT
1 A-ATAATAT
7557858 GATATAATAAT
1 -A-ATAAT-AT
7557869 AATAATAGT
1 AATAATA-T
*
7557878 AATGTAACAT
1 AA--TAATAT
*
7557888 ACT-ATAGT
1 AATAATA-T
7557896 AATAATAT
1 AATAATAT
7557904 ACTATAATAT
1 A--ATAATAT
*
7557914 AATAATAC
1 AATAATAT
*
7557922 AATAGTAAT
1 AATAAT-AT
7557931 AATAATAT
1 AATAATAT
7557939 AAT-ATGAT
1 AATAAT-AT
*
7557947 AAT-ATGGT
1 AATAAT-AT
*
7557955 -ATAATGT
1 AATAATAT
7557962 AATATAGTAT
1 AATA-A-TAT
*
7557972 AGT-ATGAT
1 AATAAT-AT
*
7557980 AACAATAT
1 AATAATAT
*
7557988 GATAATAT
1 AATAATAT
7557996 AATAATAT
1 AATAATAT
*
7558004 GATAATA
1 AATAATA
7558011 ACAAAATAAT
Statistics
Matches: 147, Mismatches: 17, Indels: 48
0.69 0.08 0.23
Matches are distributed among these distances:
6 1 0.01
7 14 0.10
8 70 0.48
9 20 0.14
10 34 0.23
11 6 0.04
12 2 0.01
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (8 bp):
AATAATAT
Found at i:7557850 original size:30 final size:29
Alignment explanation
Indices: 7557816--7557972 Score: 115
Period size: 30 Copynumber: 5.3 Consensus size: 29
7557806 AGAAAAAAAA
7557816 ATAATATAATACAATATAGTATAATATAAT
1 ATAATATAATA-AATATAGTATAATATAAT
*
7557846 ATAATATAATATGATATA--ATAATAATAAT
1 ATAATATAATA-AATATAGTATAAT-ATAAT
* * * *
7557875 AGTAATGTAACATACTATAGTAATAATATACT
1 A-TAATATAATA-AATATAGT-ATAATATAAT
* *
7557907 ATAATATAAT-AATACAATAGTAATAATAAT
1 ATAATATAATAAATATAGTA-TAAT-ATAAT
* * *
7557937 ATAATATGAT-AATATGGTATAATGTAAT
1 ATAATATAATAAATATAGTATAATATAAT
*
7557965 ATAGTATA
1 ATAATATA
7557973 GTATGATAAC
Statistics
Matches: 100, Mismatches: 20, Indels: 16
0.74 0.15 0.12
Matches are distributed among these distances:
28 16 0.16
29 19 0.19
30 48 0.48
31 7 0.07
32 5 0.05
33 5 0.05
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (29 bp):
ATAATATAATAAATATAGTATAATATAAT
Found at i:7559451 original size:9 final size:9
Alignment explanation
Indices: 7559439--7559463 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7559429 TTTTCTCTTT
7559439 TTTTTTTCA
1 TTTTTTTCA
7559448 TTTTTTTCA
1 TTTTTTTCA
7559457 TTTTTTT
1 TTTTTTT
7559464 TCCAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:7564094 original size:20 final size:21
Alignment explanation
Indices: 7564064--7564109 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
7564054 TTTTACCATA
*
7564064 TTTTTATTTTTTATT-TTCTTG
1 TTTTTA-TTTTTATTATTATTG
7564085 TTTTTA-TTTTATTATTATTG
1 TTTTTATTTTTATTATTATTG
7564105 TTTTT
1 TTTTT
7564110 TTTGTTTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 7 0.30
20 10 0.43
21 6 0.26
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.80
Consensus pattern (21 bp):
TTTTTATTTTTATTATTATTG
Found at i:7564111 original size:37 final size:37
Alignment explanation
Indices: 7564048--7564119 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
7564038 TCGAAAAGAT
*
7564048 TTTTTATTTTACCATATTTTTATTTTTTATTTTCTTG
1 TTTTTATTTTACCATATTGTTATTTTTTATTTTCTTG
** *
7564085 TTTTTATTTTATTATTATTGTT-TTTTTTGTTTTCT
1 TTTTTATTTTACCA-TATTGTTATTTTTTATTTTCT
7564120 AGAAAAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 24 0.80
38 6 0.20
ACGTcount: A:0.14, C:0.06, G:0.04, T:0.76
Consensus pattern (37 bp):
TTTTTATTTTACCATATTGTTATTTTTTATTTTCTTG
Found at i:7564190 original size:17 final size:17
Alignment explanation
Indices: 7564172--7564203 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7564162 TCATTCAATA
7564172 AAAAT-AAATAACTAAT
1 AAAATGAAATAACTAAT
7564188 AAAATGAAATAACTAA
1 AAAATGAAATAACTAA
7564204 AAGTGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.69, C:0.06, G:0.03, T:0.22
Consensus pattern (17 bp):
AAAATGAAATAACTAAT
Found at i:7564226 original size:19 final size:19
Alignment explanation
Indices: 7564202--7564298 Score: 96
Period size: 19 Copynumber: 5.2 Consensus size: 19
7564192 TGAAATAACT
7564202 AAAAGTGAAAATAAAAATA
1 AAAAGTGAAAATAAAAATA
7564221 AAAAGTGAAAATAAAAATA
1 AAAAGTGAAAATAAAAATA
* *
7564240 AAAAGTTAAAATATAAAACA
1 AAAAGTGAAAATA-AAAATA
7564260 AATAA---AAAAT-AAAATCA
1 AA-AAGTGAAAATAAAAAT-A
* *
7564277 AAAAATG-AAATTAAAATA
1 AAAAGTGAAAATAAAAATA
7564295 AAAA
1 AAAA
7564299 AAGCATGCGA
Statistics
Matches: 68, Mismatches: 3, Indels: 15
0.79 0.03 0.17
Matches are distributed among these distances:
16 6 0.09
17 3 0.04
18 14 0.21
19 36 0.53
20 7 0.10
21 2 0.03
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.18
Consensus pattern (19 bp):
AAAAGTGAAAATAAAAATA
Found at i:7564250 original size:13 final size:12
Alignment explanation
Indices: 7564168--7564273 Score: 61
Period size: 13 Copynumber: 8.1 Consensus size: 12
7564158 CAAATCATTC
7564168 AATAAAAATAAA
1 AATAAAAATAAA
7564180 TAACTAATAAAATGAAA
1 -AA-T-A-AAAAT-AAA
* *
7564197 TAACTAAAAGTGAA
1 -AA-TAAAAATAAA
7564211 AATAAAAATAAA
1 AATAAAAATAAA
*
7564223 AAGTGAAAATAAA
1 AA-TAAAAATAAA
*
7564236 AATAAAAAGTTAA
1 AATAAAAA-TAAA
* *
7564249 AATATAAA-ACA
1 AATAAAAATAAA
7564260 AATAAAAAATAAA
1 AAT-AAAAATAAA
7564273 A
1 A
7564274 TCAAAAAATG
Statistics
Matches: 73, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
11 4 0.05
12 19 0.26
13 28 0.38
14 3 0.04
15 5 0.07
16 6 0.08
17 8 0.11
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.19
Consensus pattern (12 bp):
AATAAAAATAAA
Found at i:7564281 original size:13 final size:12
Alignment explanation
Indices: 7564228--7564297 Score: 54
Period size: 13 Copynumber: 5.8 Consensus size: 12
7564218 ATAAAAAGTG
7564228 AAAATAAAAATAA
1 AAAAT-AAAATAA
* *
7564241 AAAGTTAAAATAT
1 AAA-ATAAAATAA
*
7564254 AAAA-CAAATAA
1 AAAATAAAATAA
7564265 AAAATAAAATCAA
1 AAAATAAAAT-AA
* *
7564278 AAAATGAAAT-T
1 AAAATAAAATAA
7564289 AAAATAAAA
1 AAAATAAAA
7564298 AAAGCATGCG
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
11 17 0.38
12 4 0.09
13 23 0.51
14 1 0.02
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:7564298 original size:6 final size:6
Alignment explanation
Indices: 7564168--7564273 Score: 61
Period size: 6 Copynumber: 16.2 Consensus size: 6
7564158 CAAATCATTC
* *
7564168 AATAAA AATAAA TAACTAATAA AATGAAA TAACTAAA AGTGAA AATAAA
1 AATAAA AATAAA -AA-T-A-AA AAT-AAA -AA-TAAA AATAAA AATAAA
* * * *
7564217 AATAAA AAGTGAA AATAAA AATAAA AAGTTAA AATATA AA-ACA AATAAAA
1 AATAAA AA-TAAA AATAAA AATAAA AA-TAAA AATAAA AATAAA AAT-AAA
7564267 AATAAA A
1 AATAAA A
7564274 TCAAAAAATG
Statistics
Matches: 78, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.05
6 40 0.51
7 20 0.26
8 8 0.10
9 4 0.05
10 2 0.03
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:7565100 original size:13 final size:13
Alignment explanation
Indices: 7565084--7565108 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7565074 GAAAAGAAAG
7565084 AAATAAAATAAAT
1 AAATAAAATAAAT
7565097 AAATAAAATAAA
1 AAATAAAATAAA
7565109 AATAAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATAAAATAAAT
Found at i:7565124 original size:5 final size:5
Alignment explanation
Indices: 7565116--7565272 Score: 88
Period size: 5 Copynumber: 30.6 Consensus size: 5
7565106 AAAAATAAAA
* * *
7565116 ATAAT ATAAT ATAGT ATAGT ATAAT GTAAT ATAAT ATGACAT AATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-A-AT -ATAAT
* * * * * * *
7565164 AGTAGT AGTAAT GTAGT ATACT ATAGT AATAAT ATACT ATACT ATAAT
1 A-TAAT A-TAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT
* * *
7565212 AT-A- ATAAT ACAAT AGTAAT AATAAT ATAAT AT-A- ATAAT ATGAT ACAAT
1 ATAAT ATAAT ATAAT A-TAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
*
7565260 ATAAT ATAGT ATA
1 ATAAT ATAAT ATA
7565273 GTATGAAAAC
Statistics
Matches: 120, Mismatches: 21, Indels: 22
0.74 0.13 0.13
Matches are distributed among these distances:
3 4 0.03
4 4 0.03
5 84 0.70
6 22 0.18
7 4 0.03
8 2 0.02
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.36
Consensus pattern (5 bp):
ATAAT
Found at i:7565126 original size:20 final size:19
Alignment explanation
Indices: 7565084--7565126 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7565074 GAAAAGAAAG
*
7565084 AAAT-AAAATAAATAAATA
1 AAATAAAAATAAAAAAATA
7565102 AAATAAAAATAAAAATAATA
1 AAATAAAAATAAAAA-AATA
*
7565122 TAATA
1 AAATA
7565127 TAGTATAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 9 0.43
20 8 0.38
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (19 bp):
AAATAAAAATAAAAAAATA
Found at i:7565191 original size:21 final size:21
Alignment explanation
Indices: 7565166--7565244 Score: 65
Period size: 21 Copynumber: 3.9 Consensus size: 21
7565156 ATAATAATAG
* * *
7565166 TAGTAGTAATGTAGTATACTA
1 TAGTAATAATATACTATACTA
7565187 TAGTAATAATATACTATACTA
1 TAGTAATAATATACTATACTA
* * *
7565208 TAAT-ATAATAATACAATAGTA
1 TAGTAATAAT-ATACTATACTA
*
7565229 -A-TAATAATATAATATA
1 TAGTAATAATATACTATA
7565245 ATAATATGAT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
19 7 0.15
20 11 0.23
21 30 0.62
ACGTcount: A:0.51, C:0.05, G:0.08, T:0.37
Consensus pattern (21 bp):
TAGTAATAATATACTATACTA
Found at i:7565201 original size:16 final size:15
Alignment explanation
Indices: 7565180--7565214 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
7565170 AGTAATGTAG
*
7565180 TATACTATAGTAATAA
1 TATACTATACT-ATAA
7565196 TATACTATACTATAA
1 TATACTATACTATAA
7565211 TATA
1 TATA
7565215 ATAATACAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.40
Consensus pattern (15 bp):
TATACTATACTATAA
Found at i:7565220 original size:8 final size:8
Alignment explanation
Indices: 7565190--7565310 Score: 56
Period size: 8 Copynumber: 15.0 Consensus size: 8
7565180 TATACTATAG
7565190 TAATAATA
1 TAATAATA
*
7565198 TACT-ATA
1 TAATAATA
7565205 CT-ATAATA
1 -TAATAATA
7565213 TAATAATA
1 TAATAATA
* *
7565221 CAAT-A-G
1 TAATAATA
7565227 TAATAATA
1 TAATAATA
7565235 -ATATAATA
1 TA-ATAATA
7565243 TAATAATA
1 TAATAATA
*
7565251 TGATACAATA
1 T-A-ATAATA
7565261 TAATATAGTA
1 TAATA-A-TA
*
7565271 TAGT-ATGA
1 TAATAAT-A
* *
7565279 AAACAATA
1 TAATAATA
*
7565287 TGATAATA
1 TAATAATA
7565295 TAATAATA
1 TAATAATA
*
7565303 TGATAATA
1 TAATAATA
7565311 ACAAAATAAT
Statistics
Matches: 83, Mismatches: 17, Indels: 26
0.66 0.13 0.21
Matches are distributed among these distances:
6 3 0.04
7 9 0.11
8 54 0.65
9 6 0.07
10 11 0.13
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (8 bp):
TAATAATA
Found at i:7567198 original size:36 final size:36
Alignment explanation
Indices: 7567093--7567198 Score: 104
Period size: 37 Copynumber: 2.9 Consensus size: 36
7567083 AGATTTTTAG
* * * *
7567093 TTTAAAGTTTTATTGCCTTTGGTCAAATGAGCTTTT
1 TTTAAAGTATCATTGCCTCTGGTCAAATGAGCTTTC
* * ** *
7567129 TTTAAAAGTATCATAGTCTCTACTCATATGAGCTTTC
1 TTT-AAAGTATCATTGCCTCTGGTCAAATGAGCTTTC
* *
7567166 TTTAAAGTGTCATTGCCTCTGGTCAAAAGAGCT
1 TTTAAAGTATCATTGCCTCTGGTCAAATGAGCT
7567199 ATTTAATTTT
Statistics
Matches: 53, Mismatches: 16, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
36 26 0.49
37 27 0.51
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (36 bp):
TTTAAAGTATCATTGCCTCTGGTCAAATGAGCTTTC
Found at i:7567593 original size:114 final size:114
Alignment explanation
Indices: 7567457--7567704 Score: 275
Period size: 114 Copynumber: 2.2 Consensus size: 114
7567447 CTTCTCAGAC
* * * * * * * *
7567457 TTTTAAATTTAAAGTTTCATTGCCTTTTGTCATAGGAGCCTTTTAAGTTTAAAGTTTCAT-AGCT
1 TTTTAAATTTAAAATTTCATTGCCTCTAGTCAGAGAAGCATTTTAAATTTAAAGTTTCATAATC-
* * * * *
7567521 TCTAATTAGAAGAGCTC-TTCAAAGTTTCATTTCTTTTGGTAATATGAGCT
65 TCTAATTAGAAGAGC-CATTCAAAGTTTCATTGCTTATAGTAAGAAGAGCT
* *
7567571 TTTTAAATTTAAAATTTTATTGCCTCTAGTTAGAGAAGCATTTTAAATTTAAAGTTTCATAATCT
1 TTTTAAATTTAAAATTTCATTGCCTCTAGTCAGAGAAGCATTTTAAATTTAAAGTTTCATAATCT
** * * *
7567636 CTTGTTAGAGGAGCCATTTAAAGTTTCATTGCTTATAGTCAGAAGAGCT
66 CTAATTAGAAGAGCCATTCAAAGTTTCATTGCTTATAGTAAGAAGAGCT
*
7567685 TTTTAAATTTAAAGTTTCAT
1 TTTTAAATTTAAAATTTCAT
7567705 AGTCTATGGT
Statistics
Matches: 110, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
113 1 0.01
114 107 0.97
115 2 0.02
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (114 bp):
TTTTAAATTTAAAATTTCATTGCCTCTAGTCAGAGAAGCATTTTAAATTTAAAGTTTCATAATCT
CTAATTAGAAGAGCCATTCAAAGTTTCATTGCTTATAGTAAGAAGAGCT
Found at i:7567604 original size:74 final size:74
Alignment explanation
Indices: 7567467--7567604 Score: 170
Period size: 74 Copynumber: 1.9 Consensus size: 74
7567457 TTTTAAATTT
* * * *
7567467 AAAGTTTCATTGCCTTTTGTCATAGGAGCCTTTTAAGTTTAAAGTTTCATAGCTTCTAATTAGAA
1 AAAGTTTCATTGCCTTTTGTAATAGGAGCCTTTTAAATTTAAAATTTCATAGCCTCTAATTAGAA
7567532 GAGCTCTTC
66 GAGCTCTTC
* * * * * *
7567541 AAAGTTTCATT-TCTTTTGGTAATATGAGCTTTTTAAATTTAAAATTTTATTGCCTCTAGTTAGA
1 AAAGTTTCATTGCCTTTT-GTAATAGGAGCCTTTTAAATTTAAAATTTCATAGCCTCTAATTAGA
7567605 GAAGCATTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
73 5 0.09
74 48 0.91
ACGTcount: A:0.28, C:0.13, G:0.14, T:0.44
Consensus pattern (74 bp):
AAAGTTTCATTGCCTTTTGTAATAGGAGCCTTTTAAATTTAAAATTTCATAGCCTCTAATTAGAA
GAGCTCTTC
Found at i:7567643 original size:40 final size:41
Alignment explanation
Indices: 7567571--7567654 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 41
7567561 AATATGAGCT
* **
7567571 TTTTAAATTTAAAATTTTATTGCCTCTAGTTAGAGAAG-CA
1 TTTTAAATTTAAAATTTCATAACCTCTAGTTAGAGAAGCCA
* * * *
7567611 TTTTAAATTTAAAGTTTCATAATCTCTTGTTAGAGGAGCCA
1 TTTTAAATTTAAAATTTCATAACCTCTAGTTAGAGAAGCCA
7567652 TTT
1 TTT
7567655 AAAGTTTCAT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
40 31 0.86
41 5 0.14
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.44
Consensus pattern (41 bp):
TTTTAAATTTAAAATTTCATAACCTCTAGTTAGAGAAGCCA
Found at i:7570164 original size:10 final size:10
Alignment explanation
Indices: 7570149--7570173 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7570139 CTGAAATTTT
7570149 TTTTAATAAA
1 TTTTAATAAA
7570159 TTTTAATAAA
1 TTTTAATAAA
7570169 TTTTA
1 TTTTA
7570174 GGATTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTAATAAA
Found at i:7572985 original size:27 final size:26
Alignment explanation
Indices: 7572940--7572990 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
7572930 GCTAAATTTA
7572940 AAAAAATTACTCATCTAAAGATTTTTT
1 AAAAAATTACTCATCTAAA-ATTTTTT
*
7572967 AAAAAATTGACT-ATTTAAAATTTT
1 AAAAAATT-ACTCATCTAAAATTTT
7572991 AATTTTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 5 0.23
27 14 0.64
28 3 0.14
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (26 bp):
AAAAAATTACTCATCTAAAATTTTTT
Found at i:7573193 original size:16 final size:17
Alignment explanation
Indices: 7573162--7573195 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7573152 AAGAAGTAAC
7573162 TAAATAGAACAAATAAA
1 TAAATAGAACAAATAAA
*
7573179 TAAATA-AACACATAAA
1 TAAATAGAACAAATAAA
7573195 T
1 T
7573196 GACTTAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.68, C:0.09, G:0.03, T:0.21
Consensus pattern (17 bp):
TAAATAGAACAAATAAA
Found at i:7573396 original size:7 final size:7
Alignment explanation
Indices: 7573384--7573408 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7573374 TTTAAGGTTG
7573384 ATTTTAA
1 ATTTTAA
7573391 ATTTTAA
1 ATTTTAA
7573398 ATTTTAA
1 ATTTTAA
7573405 ATTT
1 ATTT
7573409 AGCTCGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTTAA
Found at i:7573582 original size:10 final size:10
Alignment explanation
Indices: 7573557--7573587 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
7573547 ATATTTTATT
7573557 TATTAAAATA
1 TATTAAAATA
7573567 -ATTAAAATA
1 TATTAAAATA
7573576 TATTAAAATA
1 TATTAAAATA
7573586 TA
1 TA
7573588 AAAACTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
TATTAAAATA
Found at i:7574290 original size:24 final size:24
Alignment explanation
Indices: 7574263--7574308 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7574253 TTTCACTTAT
*
7574263 AAACATCTTTAGCTTCCGTGTTAC
1 AAACATCGTTAGCTTCCGTGTTAC
*
7574287 AAACATCGTTAGCTTTCGTGTT
1 AAACATCGTTAGCTTCCGTGTT
7574309 TTTATAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (24 bp):
AAACATCGTTAGCTTCCGTGTTAC
Found at i:7578830 original size:80 final size:80
Alignment explanation
Indices: 7578731--7578980 Score: 353
Period size: 80 Copynumber: 3.1 Consensus size: 80
7578721 AGAAACACCA
* * * *
7578731 TTCAACAAACCATTTAGCATATGATTTAGCCCCTCAATATCATACAAAACCATTTAGCAAAACAG
1 TTCAGCAAACCATTCAGCATATGATTTAGCCCCTCAATATCATACAAAACCATTTAGCAAAATAA
7578796 TATCAGACAACAAGG
66 TATCAGACAACAAGG
*
7578811 TTCAGCAAACCATTCAGCATATGATTTAGCCCC-CTAATATCATA-AAATACCA-TTCGACAAAA
1 TTCAGCAAACCATTCAGCATATGATTTAGCCCCTC-AATATCATACAAA-ACCATTTAG-CAAAA
* *
7578873 TAATATCAAACAATAAGG
63 TAATATCAGACAACAAGG
* * * *
7578891 TTCAGCAAACCATTCAGCATAAGATTTAACCCCTCAATATCATACAATACCATTAAGCAAAATAA
1 TTCAGCAAACCATTCAGCATATGATTTAGCCCCTCAATATCATACAAAACCATTTAGCAAAATAA
7578956 TATCAGACAACAAGG
66 TATCAGACAACAAGG
7578971 TTCAGCAAAC
1 TTCAGCAAAC
7578981 TACAATATTT
Statistics
Matches: 150, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
79 7 0.05
80 138 0.92
81 5 0.03
ACGTcount: A:0.44, C:0.24, G:0.09, T:0.24
Consensus pattern (80 bp):
TTCAGCAAACCATTCAGCATATGATTTAGCCCCTCAATATCATACAAAACCATTTAGCAAAATAA
TATCAGACAACAAGG
Found at i:7581200 original size:59 final size:56
Alignment explanation
Indices: 7581118--7581383 Score: 223
Period size: 58 Copynumber: 4.7 Consensus size: 56
7581108 AAATATTTCT
*
7581118 AAAAAATTATTTT-AAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAGATAAAATTA
1 AAAAAAATATTTTGAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAA-ATAAAATTA
** * * *
7581174 AAAAATATATATTTTTGAAGG-AAAGTTGATTGTATCAA-TTTCCTT---TTAACA-CA
1 AAAAA-A-ATA-TTTTGAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAATTA
* *
7581227 AAAAATAT-TTTTGAAGGGAAAGTTGAAAGTATCAATTTT-CTTGGAAAATAAAAGGTTA
1 AAAAAAATATTTTGAAGGAAAAGTTGAAAGTATCAATTTTCCTT--AAAATAAAA--TTA
* *
7581285 AAAAAAGTATTTTG-AGGAAAAGTTGGAAGTA-CTAATTTTCCTTAAAAATAAAAATTA
1 AAAAAAATATTTTGAAGGAAAAGTTGAAAGTATC-AATTTTCCTT-AAAAT-AAAATTA
*
7581342 TCAAGAAAAACATTTT-AAGGAAAAGTTGAAAGTATCAATTTT
1 --AA-AAAAATATTTTGAAGGAAAAGTTGAAAGTATCAATTTT
7581384 TCTTGTATAA
Statistics
Matches: 167, Mismatches: 20, Indels: 42
0.73 0.09 0.18
Matches are distributed among these distances:
49 9 0.05
50 18 0.11
51 5 0.03
53 6 0.04
54 4 0.02
55 4 0.02
56 5 0.03
57 5 0.03
58 42 0.25
59 33 0.20
60 35 0.21
61 1 0.01
ACGTcount: A:0.46, C:0.06, G:0.14, T:0.34
Consensus pattern (56 bp):
AAAAAAATATTTTGAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAATTA
Found at i:7581394 original size:58 final size:58
Alignment explanation
Indices: 7581235--7581396 Score: 134
Period size: 60 Copynumber: 2.7 Consensus size: 58
7581225 CAAAAAATAT
* * * *
7581235 TTTTGAAGGGAAAGTTGAAAGTATCAA-TTTTCTTGGAA-AATAAAAGGTTAAAAAAAGTA
1 TTTT-AAGGAAAAGTTGAAAGTATCAATTTTTCTT-GAATAA-AAAAGATCAAAAAAAGCA
* * * * **
7581294 TTTTGAGGAAAAGTTGGAAGTA-CTAATTTTCCTTAAAAATAAAAATTATCAAGAAAAA-CA
1 TTTTAAGGAAAAGTTGAAAGTATC-AATTTTTCTT--GAATAAAAAAGATCAA-AAAAAGCA
*
7581354 TTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGTATAAAAA
1 TTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAATAAAAA
7581397 CAATGAGTTC
Statistics
Matches: 81, Mismatches: 16, Indels: 13
0.74 0.15 0.12
Matches are distributed among these distances:
57 1 0.01
58 24 0.30
59 10 0.12
60 38 0.47
61 8 0.10
ACGTcount: A:0.46, C:0.06, G:0.16, T:0.33
Consensus pattern (58 bp):
TTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAATAAAAAAGATCAAAAAAAGCA
Done.