Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 34 of 131
Found at i:7710257 original size:104 final size:105
Alignment explanation
Indices: 7710070--7710292 Score: 286
Period size: 104 Copynumber: 2.1 Consensus size: 105
7710060 CTGGCAACCA
* * * ** *
7710070 AATCTGTAAAACCTCCAGGCAAAATATTTTAAAATTTTTAAAGTTTCAATGCCTTTGATATGAAG
1 AATCTGTAAGACCTACAGGCAAAACATTTTAAAATTTGCAAAGTTTCAATGCCTTTGATACGAAG
* * *
7710135 AGTATTCAAAGATATTGAGATTTATAAGACATCTGGGCAT
66 AGCATTCAAAAATATTGAGATTTATAAGACATCTGGACAT
* *
7710175 AATCTGTAAGACCTACAGGCAAAACATTTT-AAATTTGCAAAGTTTTAATGCCTTTGATACGATG
1 AATCTGTAAGACCTACAGGCAAAACATTTTAAAATTTGCAAAGTTTCAATGCCTTTGATACGAAG
* * * * *
7710239 AGCATTCAAAAATGTTGAGATTTGTAAGGCCTCTGTACAT
66 AGCATTCAAAAATATTGAGATTTATAAGACATCTGGACAT
*
7710279 AATCTCTAAGACCT
1 AATCTGTAAGACCT
7710293 CCATGCATAA
Statistics
Matches: 101, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
104 74 0.73
105 27 0.27
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (105 bp):
AATCTGTAAGACCTACAGGCAAAACATTTTAAAATTTGCAAAGTTTCAATGCCTTTGATACGAAG
AGCATTCAAAAATATTGAGATTTATAAGACATCTGGACAT
Found at i:7710293 original size:22 final size:21
Alignment explanation
Indices: 7710274--7710349 Score: 82
Period size: 22 Copynumber: 3.5 Consensus size: 21
7710264 AAGGCCTCTG
*
7710274 TACATAATCTCTAAGACCTCCA
1 TACATAATCTTTAAGACCT-CA
*
7710296 TGCATAATCTTTAAGACCTCCA
1 TACATAATCTTTAAGACCT-CA
7710318 -AGCATAATCTTTAAGACCTCA
1 TA-CATAATCTTTAAGACCTCA
*
7710339 AAGCATAATCT
1 TA-CATAATCT
7710350 GTAAAATCTC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
21 2 0.04
22 47 0.96
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (21 bp):
TACATAATCTTTAAGACCTCA
Found at i:7712591 original size:3 final size:3
Alignment explanation
Indices: 7712583--7712646 Score: 121
Period size: 3 Copynumber: 21.7 Consensus size: 3
7712573 CAAGTATTTT
7712583 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7712631 TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TT
7712647 CCTACATATT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 58 0.97
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7712799 original size:17 final size:18
Alignment explanation
Indices: 7712771--7712811 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
7712761 TCTATTCTAA
*
7712771 AAAATGTAATAAATAAAT
1 AAAATGTAATAAAAAAAT
7712789 AAAAT-TAATAAAAAAAT
1 AAAATGTAATAAAAAAAT
*
7712806 TAAATG
1 AAAATG
7712812 AAATTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAATGTAATAAAAAAAT
Found at i:7712990 original size:11 final size:11
Alignment explanation
Indices: 7712974--7713000 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7712964 TTAATAAAGG
7712974 ATAAAATATTT
1 ATAAAATATTT
7712985 ATAAAATATTT
1 ATAAAATATTT
7712996 ATAAA
1 ATAAA
7713001 GTATACATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
ATAAAATATTT
Found at i:7715717 original size:30 final size:30
Alignment explanation
Indices: 7715676--7715745 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 30
7715666 GAATAATAAA
*
7715676 ATATAAAAATTTATATATTCATATATGT-T-TT
1 ATAT-AAAATTTACATATT-ATA-ATGTATATT
*
7715707 ATATAAAATTTACATATTATAATTTATATT
1 ATATAAAATTTACATATTATAATGTATATT
7715737 ATATAAAAT
1 ATATAAAAT
7715746 ATATTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 3 0.09
29 4 0.11
30 24 0.69
31 4 0.11
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (30 bp):
ATATAAAATTTACATATTATAATGTATATT
Found at i:7716247 original size:67 final size:67
Alignment explanation
Indices: 7716121--7716247 Score: 191
Period size: 67 Copynumber: 1.9 Consensus size: 67
7716111 TCTCAACTGC
* * **
7716121 AAATATGATTGTTCAATTAGTGTAGGCTCCAATTTTCATGGGGTTGATTAATATGTCTCAGCCAC
1 AAATATGATTGTTCAATTAGTGTAGGCTCCAATTTGCATGGGATTGATTAATAAATCTCAGCCAC
7716186 AA
66 AA
* * *
7716188 AAATATGATTGTTCAATTAGTGTGGGCTCCAATTTGCATGGTATTGATTGATAAATCTCA
1 AAATATGATTGTTCAATTAGTGTAGGCTCCAATTTGCATGGGATTGATTAATAAATCTCA
7716248 ATCAACCGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
67 53 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (67 bp):
AAATATGATTGTTCAATTAGTGTAGGCTCCAATTTGCATGGGATTGATTAATAAATCTCAGCCAC
AA
Found at i:7720294 original size:18 final size:19
Alignment explanation
Indices: 7720273--7720315 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
7720263 AAATTAGACT
**
7720273 TTAAAATT-AAATTTGGGC
1 TTAAAATTGAAATTTAAGC
7720291 TTAAAATTGAAATTTAAGC
1 TTAAAATTGAAATTTAAGC
7720310 TTAAAA
1 TTAAAA
7720316 ATTTGATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.37
Consensus pattern (19 bp):
TTAAAATTGAAATTTAAGC
Found at i:7720764 original size:25 final size:26
Alignment explanation
Indices: 7720710--7720764 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 26
7720700 ATTTTCTTGA
* *
7720710 GTTTTGAATTTTTTTTTTTCAACTTT
1 GTTTTGAATTTTTTATTTTCAAATTT
* *
7720736 -TTTTGGA-TTTTTATTTTGAAATTT
1 GTTTTGAATTTTTTATTTTCAAATTT
7720760 GTTTT
1 GTTTT
7720765 CAAAAACTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.16, C:0.04, G:0.11, T:0.69
Consensus pattern (26 bp):
GTTTTGAATTTTTTATTTTCAAATTT
Found at i:7720886 original size:46 final size:47
Alignment explanation
Indices: 7720794--7721044 Score: 228
Period size: 46 Copynumber: 5.4 Consensus size: 47
7720784 AGGCTTCATT
* * * * *
7720794 ACTTTTGAAAATGAACTTAAAAACACCTTTAAGC-AAAGATTGAATA
1 ACTTTTGAAAATAAATTTAAAAACTCCTTTAAGCAAAAGATTCAACA
* * *
7720840 ATTTTTGAAAATAAATTTTAAAACTCCTTTAAGCAAAAG-TTCAATA
1 ACTTTTGAAAATAAATTTAAAAACTCCTTTAAGCAAAAGATTCAACA
* * * *
7720886 ACTTTT-AAAAGTAAATTTAAAAACTTCATTAAGCAAAGGCTT-AACA
1 ACTTTTGAAAA-TAAATTTAAAAACTCCTTTAAGCAAAAGATTCAACA
* * * * *
7720932 ACTTTTGAAAGTAAATTTAAAAGCTCATTTCAA--TAAAGGTTCAACA
1 ACTTTTGAAAATAAATTTAAAAACTCCTTT-AAGCAAAAGATTCAACA
* * * * *
7720978 ACTTTTAAAAATAAATTAAAAAACTCCCTTAAAC-AAAGATTCTACA
1 ACTTTTGAAAATAAATTTAAAAACTCCTTTAAGCAAAAGATTCAACA
*
7721024 ACTTTTAAAAATAAATTTAAA
1 ACTTTTGAAAATAAATTTAAA
7721045 GCTTTTTTCA
Statistics
Matches: 168, Mismatches: 29, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
45 11 0.07
46 146 0.87
47 11 0.07
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.32
Consensus pattern (47 bp):
ACTTTTGAAAATAAATTTAAAAACTCCTTTAAGCAAAAGATTCAACA
Found at i:7720906 original size:92 final size:92
Alignment explanation
Indices: 7720794--7721073 Score: 264
Period size: 92 Copynumber: 3.1 Consensus size: 92
7720784 AGGCTTCATT
* * * * * * *
7720794 ACTTTTGAAAATGAACTTAAAAACACCTTTAAGCAAAGATTGAATAATTTTTGAAAATAAATTTT
1 ACTTTTAAAAATAAATTTAAAAACTCCATTAAGCAAAGATT-AACAACTTTTGAAAATAAATTTT
* *
7720859 AAAA-CTCCTTT-AAGCAAAAGTTCAATA
65 AAAAGCTCATTTCAA-CAAAAGTTCAACA
* * * *
7720886 ACTTTTAAAAGTAAATTTAAAAACTTCATTAAGCAAAGGCTTAACAACTTTTGAAAGTAAA-TTT
1 ACTTTTAAAAATAAATTTAAAAACTCCATTAAGCAAA-GATTAACAACTTTTGAAAATAAATTTT
* *
7720950 AAAAGCTCATTTCAATAAAGGTTCAACA
65 AAAAGCTCATTTCAACAAAAGTTCAACA
* * * * *
7720978 ACTTTTAAAAATAAATTAAAAAACTCCCTTAAACAAAGATTCTACAACTTTTAAAAATAAA-TTT
1 ACTTTTAAAAATAAATTTAAAAACTCCATTAAGCAAAGATT-AACAACTTTTGAAAATAAATTTT
** * * *
7721042 -AAAGCTTTTTTCAATAAAGGCTCAACA
65 AAAAGCTCATTTCAACAAAAGTTCAACA
7721069 ACTTT
1 ACTTT
7721074 GGAAATTAAA
Statistics
Matches: 157, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
91 39 0.25
92 113 0.72
93 5 0.03
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.33
Consensus pattern (92 bp):
ACTTTTAAAAATAAATTTAAAAACTCCATTAAGCAAAGATTAACAACTTTTGAAAATAAATTTTA
AAAGCTCATTTCAACAAAAGTTCAACA
Found at i:7721382 original size:43 final size:43
Alignment explanation
Indices: 7721320--7721544 Score: 163
Period size: 44 Copynumber: 5.2 Consensus size: 43
7721310 GAAGTTCAAC
*
7721320 AACTTTAAAAATTTAGAAAACCTTATCTAAACAAAGACTTGACA
1 AACTTTAAAAATTT-GAAAAACTTATCTAAACAAAGACTTGACA
* * **
7721364 AACTTTAAAAATTTGAAAAAACTTTTCTAAACAAAAACTCAAC-
1 AACTTTAAAAATTTG-AAAAACTTATCTAAACAAAGACTTGACA
* ** * * *
7721407 AACTTTAAAAACTTAGAAAAACTCCTTTAAA-AAAGGCTAGAC-
1 AACTTTAAAAA-TTTGAAAAACTTATCTAAACAAAGACTTGACA
* * * * *
7721449 AACTTTAAAATTTTGAAAAAGCTTTTCTAAATAGAAG-C-TAAAA
1 AACTTTAAAAATTTGAAAAA-CTTATCTAAACA-AAGACTTGACA
* * * * *
7721492 AATTTTAAAAATTTGGAAAAGTTCATCTAAACAAAGGCTTGATA
1 AACTTTAAAAATTTGAAAAACTT-ATCTAAACAAAGACTTGACA
*
7721536 AATTTTAAA
1 AACTTTAAA
7721545 TGGTTTTTTT
Statistics
Matches: 143, Mismatches: 29, Indels: 18
0.75 0.15 0.09
Matches are distributed among these distances:
41 8 0.06
42 30 0.21
43 51 0.36
44 54 0.38
ACGTcount: A:0.50, C:0.13, G:0.08, T:0.29
Consensus pattern (43 bp):
AACTTTAAAAATTTGAAAAACTTATCTAAACAAAGACTTGACA
Found at i:7721499 original size:85 final size:87
Alignment explanation
Indices: 7721320--7721527 Score: 240
Period size: 85 Copynumber: 2.4 Consensus size: 87
7721310 GAAGTTCAAC
* * *
7721320 AACTTTAAAAATTTAGAAAACCTTATCTAAACAAAGACTTGACAAACTTTAAAAATTTGAAAAAA
1 AACTTTAAAAATTTAGAAAAACTCATCTAAACAAAGACTAGACAAACTTTAAAAATTTGAAAAAA
* *
7721385 CTTTTCTAAACAAAAACTCAAC
66 CTTTTCTAAACAAAAACTAAAA
* * * * * *
7721407 AACTTTAAAAACTTAGAAAAACTCCTTTAAA-AAAGGCTAGAC-AACTTTAAAATTTTGAAAAAG
1 AACTTTAAAAATTTAGAAAAACTCATCTAAACAAAGACTAGACAAACTTTAAAAATTTGAAAAAA
* * *
7721470 CTTTTCTAAATAGAAGCTAAAA
66 CTTTTCTAAACAAAAACTAAAA
* * **
7721492 AATTTTAAAAATTTGGAAAAGTTCATCTAAACAAAG
1 AACTTTAAAAATTTAGAAAAACTCATCTAAACAAAG
7721528 GCTTGATAAA
Statistics
Matches: 99, Mismatches: 21, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
85 60 0.61
86 13 0.13
87 26 0.26
ACGTcount: A:0.50, C:0.13, G:0.08, T:0.28
Consensus pattern (87 bp):
AACTTTAAAAATTTAGAAAAACTCATCTAAACAAAGACTAGACAAACTTTAAAAATTTGAAAAAA
CTTTTCTAAACAAAAACTAAAA
Found at i:7721964 original size:32 final size:33
Alignment explanation
Indices: 7721920--7721996 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 33
7721910 ATCATTTTCA
* *
7721920 TTTACCATTCATTT-TCATTGATT-CATTCATCC
1 TTTATCATTCATTTATCA-TCATTCCATTCATCC
*
7721952 TTTATCATTCATTTATTATCATTCCATTCATCC
1 TTTATCATTCATTTATCATCATTCCATTCATCC
*
7721985 ATT-TCATTCATT
1 TTTATCATTCATT
7721997 CCCTTTACTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
32 26 0.67
33 13 0.33
ACGTcount: A:0.23, C:0.23, G:0.01, T:0.52
Consensus pattern (33 bp):
TTTATCATTCATTTATCATCATTCCATTCATCC
Found at i:7722094 original size:50 final size:49
Alignment explanation
Indices: 7721974--7722095 Score: 115
Period size: 50 Copynumber: 2.4 Consensus size: 49
7721964 TTATTATCAT
* *
7721974 TCCATTCATCCATTTCATTCATTCCCTTTACTTTCCATCATTTTTTCATTCA
1 TCCATTCAT-CATTT-ATTCA-TCACTTCACTTTCCATCATTTTTTCATTCA
* * *
7722026 TCCATCTCTTCA-TCATTCATCACTTCCACTTTCCATTCA-TTTTTCATCTTA
1 TCCAT-TCATCATTTATTCATCACTT-CACTTTCCA-TCATTTTTTCAT-TCA
7722077 T-CATTCATCATTTATTCAT
1 TCCATTCATCATTTATTCAT
7722096 TTTATTCATT
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
49 10 0.17
50 31 0.53
51 7 0.12
52 7 0.12
53 3 0.05
ACGTcount: A:0.20, C:0.30, G:0.00, T:0.49
Consensus pattern (49 bp):
TCCATTCATCATTTATTCATCACTTCACTTTCCATCATTTTTTCATTCA
Found at i:7722356 original size:20 final size:21
Alignment explanation
Indices: 7722333--7722373 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
7722323 CACTCATTCA
7722333 CTTTTATTTCATT-CATTTCT
1 CTTTTATTTCATTCCATTTCT
*
7722353 CTTTTATTTCTTTCCATTTCT
1 CTTTTATTTCATTCCATTTCT
7722374 TATTTTATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.12, C:0.22, G:0.00, T:0.66
Consensus pattern (21 bp):
CTTTTATTTCATTCCATTTCT
Found at i:7722594 original size:34 final size:33
Alignment explanation
Indices: 7722519--7722604 Score: 100
Period size: 34 Copynumber: 2.6 Consensus size: 33
7722509 ATCAGATGCT
* * *
7722519 AGTTAAACTATGCTTAAATCTTATCTTAGTGCC
1 AGTTAAACTAAGCTTAAATCTAATCTTAGTACC
***
7722552 AACAAAACTAAGCTTAAATCTCAATCTTAGTACC
1 AGTTAAACTAAGCTTAAATCT-AATCTTAGTACC
*
7722586 AGTTAAACTAGGCTTAAAT
1 AGTTAAACTAAGCTTAAAT
7722605 TTCATTTTTT
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
33 17 0.40
34 25 0.60
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (33 bp):
AGTTAAACTAAGCTTAAATCTAATCTTAGTACC
Found at i:7722796 original size:16 final size:15
Alignment explanation
Indices: 7722769--7722816 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
7722759 CTTTTTCGTC
*
7722769 TCTTATTTTCTTTTT
1 TCTTCTTTTCTTTTT
7722784 TCTTCTCTTTCTTTTCT
1 TCTTCT-TTTCTTTT-T
7722801 T-TTCTTTT-TTTTT
1 TCTTCTTTTCTTTTT
7722814 TCT
1 TCT
7722817 CCAAACTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
13 2 0.07
14 5 0.17
15 8 0.28
16 12 0.41
17 2 0.07
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (15 bp):
TCTTCTTTTCTTTTT
Found at i:7722800 original size:14 final size:13
Alignment explanation
Indices: 7722779--7722817 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
7722769 TCTTATTTTC
7722779 TTTTTTCTTCTCT
1 TTTTTTCTTCTCT
*
7722792 TTCTTTTCTTTTCT
1 TT-TTTTCTTCTCT
*
7722806 TTTTTTTTTCTC
1 TTTTTTCTTCTC
7722818 CAAACTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTCTTCTCT
Found at i:7722816 original size:21 final size:21
Alignment explanation
Indices: 7722760--7722803 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7722750 CATGCTATAC
* *
7722760 TTTTTCGTCTC-TTATTTTCT
1 TTTTTCTTCTCTTTCTTTTCT
7722780 TTTTTCTTCTCTTTCTTTTCT
1 TTTTTCTTCTCTTTCTTTTCT
7722801 TTT
1 TTT
7722804 CTTTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.75
Consensus pattern (21 bp):
TTTTTCTTCTCTTTCTTTTCT
Found at i:7725349 original size:8 final size:8
Alignment explanation
Indices: 7725293--7725368 Score: 57
Period size: 8 Copynumber: 8.9 Consensus size: 8
7725283 CATTCATTTC
7725293 TTTTTTT-
1 TTTTTTTA
*
7725300 TTTTCTTA
1 TTTTTTTA
7725308 TTTTCTTATA
1 TTTT-TT-TA
7725318 TTCTTTTTCA
1 TT-TTTTT-A
*
7725328 -TTTTTCA
1 TTTTTTTA
7725335 TTTTTTTA
1 TTTTTTTA
7725343 TTTTTTTAA
1 TTTTTTT-A
7725352 TTTCCTTTTA
1 TTT--TTTTA
7725362 TTTTTTT
1 TTTTTTT
7725369 TTCTTTCTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
7 7 0.12
8 25 0.45
9 7 0.12
10 11 0.20
11 6 0.11
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7725355 original size:22 final size:21
Alignment explanation
Indices: 7725288--7725370 Score: 55
Period size: 21 Copynumber: 4.0 Consensus size: 21
7725278 CCACTCATTC
7725288 ATTTC-TTTT-TTTTTTTCTTA
1 ATTTCATTTTATTTTTTT-TTA
* * * *
7725308 TTTTC-TTATATTCTTTTTCA
1 ATTTCATTTTATTTTTTTTTA
* *
7725328 TTTTTCATTTTTTTATTTTTTTA
1 -ATTTCATTTTATT-TTTTTTTA
*
7725351 ATTTCCTTTTATTTTTTTTT
1 ATTTCATTTTATTTTTTTTT
7725371 CTTTCTTGTT
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
20 9 0.19
21 18 0.38
22 15 0.31
23 6 0.12
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (21 bp):
ATTTCATTTTATTTTTTTTTA
Found at i:7725941 original size:20 final size:19
Alignment explanation
Indices: 7725918--7725961 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
7725908 ATAATAAAAA
7725918 ATTTTCTGTCTCTTTTTTTC
1 ATTTTCTG-CTCTTTTTTTC
* *
7725938 ATTTTTTGCTTTTTTTTTC
1 ATTTTCTGCTCTTTTTTTC
7725957 ATTTT
1 ATTTT
7725962 TTTTTGCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.07, C:0.14, G:0.05, T:0.75
Consensus pattern (19 bp):
ATTTTCTGCTCTTTTTTTC
Found at i:7727770 original size:48 final size:48
Alignment explanation
Indices: 7727716--7727813 Score: 160
Period size: 48 Copynumber: 2.0 Consensus size: 48
7727706 TATGCCACTT
7727716 TAATGAAATCGATTCTACCATTAAGATGTGCATGATATGAAGTATATG
1 TAATGAAATCGATTCTACCATTAAGATGTGCATGATATGAAGTATATG
* * * *
7727764 TAATGAAATTGATTTTACCATTAAGATGTGCATGTTATGAAGTGTATG
1 TAATGAAATCGATTCTACCATTAAGATGTGCATGATATGAAGTATATG
7727812 TA
1 TA
7727814 CTACCTTGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (48 bp):
TAATGAAATCGATTCTACCATTAAGATGTGCATGATATGAAGTATATG
Found at i:7729170 original size:3 final size:3
Alignment explanation
Indices: 7729162--7729194 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
7729152 TTTTTCCTTT
7729162 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7729195 AAAAATCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7730798 original size:13 final size:13
Alignment explanation
Indices: 7730780--7730806 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7730770 AAGTTTTAAG
7730780 GGTTTTAGGGTTT
1 GGTTTTAGGGTTT
7730793 GGTTTTAGGGTTT
1 GGTTTTAGGGTTT
7730806 G
1 G
7730807 AGAGGTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.41, T:0.52
Consensus pattern (13 bp):
GGTTTTAGGGTTT
Found at i:7730798 original size:22 final size:22
Alignment explanation
Indices: 7730772--7730814 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7730762 TTTGGTTTAA
*
7730772 GTTTTAAGGGTTTTAG-GGTTTG
1 GTTTT-AGGGTTTGAGAGGTTTG
7730794 GTTTTAGGGTTTGAGAGGTTT
1 GTTTTAGGGTTTGAGAGGTTT
7730815 AGGGTTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.14, C:0.00, G:0.37, T:0.49
Consensus pattern (22 bp):
GTTTTAGGGTTTGAGAGGTTTG
Found at i:7730799 original size:29 final size:29
Alignment explanation
Indices: 7730753--7730852 Score: 87
Period size: 29 Copynumber: 3.4 Consensus size: 29
7730743 GGATTTTGGA
*
7730753 TTTTAGAGTTTTGG-TTTAAGTTTTAAGGG
1 TTTTAG-GGTTTGGTTTTAAGTTTTAAGGG
* * *
7730782 TTTTAGGGTTTGGTTTTAGGGTTTGAGAGG
1 TTTTAGGGTTTGGTTTTAAGTTTTAAG-GG
* * *
7730812 -TTTAGGGTTTTGATTTTAGAGTTTAAAAGG
1 TTTTAGGG-TTTGGTTTTA-AGTTTTAAGGG
7730842 TTTTAGGGTTT
1 TTTTAGGGTTT
7730853 CAATTTTAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
28 6 0.11
29 23 0.41
30 16 0.29
31 11 0.20
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (29 bp):
TTTTAGGGTTTGGTTTTAAGTTTTAAGGG
Found at i:7730802 original size:21 final size:21
Alignment explanation
Indices: 7730747--7730814 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
7730737 AGTTTTGGAT
*
7730747 TTTGGATTTTAGAGTTTT--GG
1 TTTGG-TTTTAGGGTTTTAGGG
*
7730767 TTTAAGTTTTAAGGGTTTTAGGG
1 TTT-GGTTTT-AGGGTTTTAGGG
*
7730790 TTTGGTTTTAGGGTTTGAGAGG
1 TTTGGTTTTAGGGTTTTAG-GG
7730812 TTT
1 TTT
7730815 AGGGTTTTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 17 0.44
22 10 0.26
23 5 0.13
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.51
Consensus pattern (21 bp):
TTTGGTTTTAGGGTTTTAGGG
Found at i:7730829 original size:30 final size:31
Alignment explanation
Indices: 7730753--7730852 Score: 100
Period size: 30 Copynumber: 3.4 Consensus size: 31
7730743 GGATTTTGGA
* * * *
7730753 TTTTAGAGTTTTG-GTTTA-AGTTTTAAGGG
1 TTTTAGGGTTTTGATTTTAGAGTTTAAAAGG
* * * *
7730782 TTTTAGGG-TTTGGTTTTAGGGTTTGAGAGG
1 TTTTAGGGTTTTGATTTTAGAGTTTAAAAGG
7730812 -TTTAGGGTTTTGATTTTAGAGTTTAAAAGG
1 TTTTAGGGTTTTGATTTTAGAGTTTAAAAGG
7730842 TTTTAGGGTTT
1 TTTTAGGGTTT
7730853 CAATTTTAAT
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 4 0.07
29 18 0.32
30 25 0.44
31 10 0.18
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (31 bp):
TTTTAGGGTTTTGATTTTAGAGTTTAAAAGG
Found at i:7731229 original size:26 final size:27
Alignment explanation
Indices: 7731200--7731250 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
7731190 TTATTATAAA
7731200 TTTTGT-ATCTATTAT-TTTATTTTAGT
1 TTTTGTCAT-TATTATATTTATTTTAGT
*
7731226 TTTTGTCATTATTATATTTGTTTTA
1 TTTTGTCATTATTATATTTATTTTA
7731251 CATGTCCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.20, C:0.04, G:0.08, T:0.69
Consensus pattern (27 bp):
TTTTGTCATTATTATATTTATTTTAGT
Found at i:7731291 original size:3 final size:3
Alignment explanation
Indices: 7731285--7731353 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
7731275 AATAACACAC
7731285 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7731333 TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
7731354 CAAATATATA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7731444 original size:20 final size:21
Alignment explanation
Indices: 7731409--7731447 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
7731399 TTTGCGTCGA
7731409 TCAATGGTGAGTCAATGCCGG
1 TCAATGGTGAGTCAATGCCGG
*
7731430 TCAATGGT-TGTCAATGCC
1 TCAATGGTGAGTCAATGCC
7731448 TGGCAGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (21 bp):
TCAATGGTGAGTCAATGCCGG
Found at i:7731668 original size:24 final size:23
Alignment explanation
Indices: 7731641--7731686 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7731631 ATTTCATTTC
7731641 AAACCCTTCCTATAAAAAAAAAAG
1 AAACCCTT-CTATAAAAAAAAAAG
* *
7731665 AAACTCTTCTTTAAAAAAAAAA
1 AAACCCTTCTATAAAAAAAAAA
7731687 AACAAAACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.59, C:0.17, G:0.02, T:0.22
Consensus pattern (23 bp):
AAACCCTTCTATAAAAAAAAAAG
Found at i:7733151 original size:17 final size:19
Alignment explanation
Indices: 7733131--7733171 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
7733121 TTTATTTTTC
7733131 TTATATATTT-GT-TGTTA
1 TTATATATTTGGTGTGTTA
*
7733148 TTATTATTTTTGGTGTGTTA
1 TTA-TATATTTGGTGTGTTA
7733168 TTAT
1 TTAT
7733172 TGATATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 3 0.15
18 6 0.30
19 3 0.15
20 8 0.40
ACGTcount: A:0.20, C:0.00, G:0.15, T:0.66
Consensus pattern (19 bp):
TTATATATTTGGTGTGTTA
Found at i:7733616 original size:3 final size:3
Alignment explanation
Indices: 7733610--7733634 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7733600 TAATAAAAAA
7733610 ACT ACT ACT ACT ACT ACT ACT ACT A
1 ACT ACT ACT ACT ACT ACT ACT ACT A
7733635 ATAATAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ACT
Found at i:7733639 original size:3 final size:3
Alignment explanation
Indices: 7733633--7733689 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
7733623 CTACTACTAC
7733633 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7733681 TAA TAA TAA
1 TAA TAA TAA
7733690 AATTGTTATA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7733905 original size:14 final size:14
Alignment explanation
Indices: 7733886--7733941 Score: 67
Period size: 14 Copynumber: 3.9 Consensus size: 14
7733876 TAAACCCTCC
7733886 AAACCCTAAAACTA
1 AAACCCTAAAACTA
* *
7733900 AAACCCAAAATACTTT
1 AAACCCTAAA-AC-TA
7733916 AAACCCTAAAACTA
1 AAACCCTAAAACTA
*
7733930 AAACTCTAAAAC
1 AAACCCTAAAAC
7733942 CCTGTAAATC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
14 21 0.60
15 4 0.11
16 10 0.29
ACGTcount: A:0.55, C:0.27, G:0.00, T:0.18
Consensus pattern (14 bp):
AAACCCTAAAACTA
Found at i:7734035 original size:60 final size:60
Alignment explanation
Indices: 7733817--7734073 Score: 204
Period size: 61 Copynumber: 4.3 Consensus size: 60
7733807 TTCTTTAAAT
* * * * ** *
7733817 CCTAAACCC-C-AAATCCTAAAGTCAAAACCCTAAACCCTCT-AATTCTAAAATCGAAAC
1 CCTAAACCCTCTAAACCCTAAAATCAAAACCCTAAAACCTTTAAACCCTAAAATCAAAAC
* *
7733874 CCTAAACCCTCCAAACCCTAAAA-CTAAAACCC-AAAATACTTTAAACCCTAAAA-CTAAAAC
1 CCTAAACCCTCTAAACCCTAAAATC-AAAACCCTAAAA-CCTTTAAACCCTAAAATC-AAAAC
* * * ** * * * *
7733934 TCTAAAACCCTGTAAATCCTAAAAT-TGAACCTTAAACCCTTTGAACCCTACAATCAAAAC
1 CCT-AAACCCTCTAAACCCTAAAATCAAAACCCTAAAACCTTTAAACCCTAAAATCAAAAC
* * * * *
7733994 CCTTAACCCTTTGAACCCTAAAATCAAAACCCTAAAACCTTTTAAACCTTAAAATGAAAAC
1 CCTAAACCCTCTAAACCCTAAAATCAAAACCCTAAAACC-TTTAAACCCTAAAATCAAAAC
*
7734055 CCTAAACCTTCTAAACCCT
1 CCTAAACCCTCTAAACCCT
7734074 TAAACTCTCA
Statistics
Matches: 152, Mismatches: 36, Indels: 20
0.73 0.17 0.10
Matches are distributed among these distances:
57 9 0.06
58 5 0.03
59 37 0.24
60 48 0.32
61 53 0.35
ACGTcount: A:0.44, C:0.32, G:0.03, T:0.22
Consensus pattern (60 bp):
CCTAAACCCTCTAAACCCTAAAATCAAAACCCTAAAACCTTTAAACCCTAAAATCAAAAC
Found at i:7734054 original size:31 final size:30
Alignment explanation
Indices: 7733831--7734073 Score: 199
Period size: 30 Copynumber: 8.1 Consensus size: 30
7733821 AACCCCAAAT
* * *
7733831 CCTAAAGTCAAAACCCTAAACCCTCT-AAT
1 CCTAAAATCAAAACCCTAAACCCTTTAAAC
* * **
7733860 TCTAAAATCGAAACCCTAAACCCTCCAAAC
1 CCTAAAATCAAAACCCTAAACCCTTTAAAC
* **
7733890 CCTAAAA-CTAAAACCCAAAATACTTTAAAC
1 CCTAAAATC-AAAACCCTAAACCCTTTAAAC
* * *
7733920 CCTAAAA-CTAAAACTCTAAAACCCTGTAAAT
1 CCTAAAATC-AAAACCCT-AAACCCTTTAAAC
** * *
7733951 CCTAAAAT-TGAACCTTAAACCCTTTGAAC
1 CCTAAAATCAAAACCCTAAACCCTTTAAAC
* * *
7733980 CCTACAATCAAAACCCTTAACCCTTTGAAC
1 CCTAAAATCAAAACCCTAAACCCTTTAAAC
*
7734010 CCTAAAATCAAAACCCTAAAACCTTTTAAAC
1 CCTAAAATCAAAACCCT-AAACCCTTTAAAC
* *
7734041 CTTAAAATGAAAACCCTAAA-CCTTCTAAAC
1 CCTAAAATCAAAACCCTAAACCCTT-TAAAC
7734071 CCT
1 CCT
7734074 TAAACTCTCA
Statistics
Matches: 169, Mismatches: 38, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
29 43 0.25
30 85 0.50
31 41 0.24
ACGTcount: A:0.44, C:0.31, G:0.03, T:0.22
Consensus pattern (30 bp):
CCTAAAATCAAAACCCTAAACCCTTTAAAC
Found at i:7734908 original size:38 final size:38
Alignment explanation
Indices: 7734866--7734944 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
7734856 ATGTTGAAGA
7734866 ATTTTAAGATAATTCTTTAACTTAAAGATTTCCTCAAT
1 ATTTTAAGATAATTCTTTAACTTAAAGATTTCCTCAAT
7734904 ATTTTAAGATAATTCTTTAACTTAAAGATTTCCTCAAT
1 ATTTTAAGATAATTCTTTAACTTAAAGATTTCCTCAAT
7734942 ATT
1 ATT
7734945 CCTAAATAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.05, T:0.46
Consensus pattern (38 bp):
ATTTTAAGATAATTCTTTAACTTAAAGATTTCCTCAAT
Found at i:7734931 original size:19 final size:19
Alignment explanation
Indices: 7734871--7734932 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
7734861 GAAGAATTTT
7734871 AAGATAATTCTTTAACTTA
1 AAGATAATTCTTTAACTTA
** * *
7734890 AAGAT--TTCCTCAATATTTT
1 AAGATAATT-CTTTA-ACTTA
7734909 AAGATAATTCTTTAACTTA
1 AAGATAATTCTTTAACTTA
7734928 AAGAT
1 AAGAT
7734933 TTCCTCAATA
Statistics
Matches: 31, Mismatches: 8, Indels: 8
0.66 0.17 0.17
Matches are distributed among these distances:
17 2 0.06
18 3 0.10
19 21 0.68
20 3 0.10
21 2 0.06
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.42
Consensus pattern (19 bp):
AAGATAATTCTTTAACTTA
Found at i:7735997 original size:24 final size:24
Alignment explanation
Indices: 7735965--7736012 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7735955 TATTTTTAGA
7735965 TTCTTTAATTGTGTTACTTACATT
1 TTCTTTAATTGTGTTACTTACATT
7735989 TTCTTTAATTGTGTTACTTACATT
1 TTCTTTAATTGTGTTACTTACATT
7736013 ACATAGGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.12, G:0.08, T:0.58
Consensus pattern (24 bp):
TTCTTTAATTGTGTTACTTACATT
Found at i:7740588 original size:18 final size:18
Alignment explanation
Indices: 7740565--7740613 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
7740555 AAATGAAAGG
7740565 AAAAAAAGAATAAAAAAA
1 AAAAAAAGAATAAAAAAA
* *
7740583 AAAAAAAAACATAAGAAAA
1 AAAAAAAGA-ATAAAAAAA
*
7740602 TAAAAAAGAATA
1 AAAAAAAGAATA
7740614 TATCTCAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.84, C:0.02, G:0.06, T:0.08
Consensus pattern (18 bp):
AAAAAAAGAATAAAAAAA
Found at i:7740589 original size:19 final size:19
Alignment explanation
Indices: 7740565--7740613 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
7740555 AAATGAAAGG
7740565 AAAAAAAGAATAAAAAAAA
1 AAAAAAAGAATAAAAAAAA
*
7740584 AAAAAAA-ACAT-AAGAAAA
1 AAAAAAAGA-ATAAAAAAAA
*
7740602 TAAAAAAGAATA
1 AAAAAAAGAATA
7740614 TATCTCAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.84, C:0.02, G:0.06, T:0.08
Consensus pattern (19 bp):
AAAAAAAGAATAAAAAAAA
Found at i:7741052 original size:217 final size:216
Alignment explanation
Indices: 7740677--7741113 Score: 865
Period size: 217 Copynumber: 2.0 Consensus size: 216
7740667 TTAAATACTT
7740677 GTTTTGGGCCTTTTAATCCTTTTTTTTTATAACCTCAAACCTTAACCTACATCACAACCTTTGAA
1 GTTTTGGGCCTTTTAATCCTTTTTTTTTATAACCTCAAACCTTAACCTACATCACAACCTTTGAA
7740742 AAATCCATATTGAATCAAGCATGGAGGCTTAAAATTGAAGAGTTTCACTTGGAAAAATGGCCATG
66 AAATCCATATTGAATCAAGCATGGAGGCTTAAAATTGAAGAGTTTCACTTGGAAAAATGGCCATG
7740807 AATCTTTTGAGTCCTCTTTTATTACATAATTTTTTATTTGGACCATTAACCTCTTTTGAAAAAAT
131 AATCTTTTGAGTCCTCTTTTATTACATAATTTTTTATTTGGACCATTAACCTCTTTTGAAAAAAT
7740872 TCTTTTCCTCTTTTGGTATTAG
196 TCTTTTCCTCTTTTGG-ATTAG
7740894 GTTTTGGGCCTTTTAATCCTTTTTTTTTATAACCTCAAACCTTAACCTACATCACAACCTTTGAA
1 GTTTTGGGCCTTTTAATCCTTTTTTTTTATAACCTCAAACCTTAACCTACATCACAACCTTTGAA
7740959 AAATCCATATTGAATCAAGCATGGAGGCTTAAAATTGAAGAGTTTCACTTGGAAAAATGGCCATG
66 AAATCCATATTGAATCAAGCATGGAGGCTTAAAATTGAAGAGTTTCACTTGGAAAAATGGCCATG
7741024 AATCTTTTGAGTCCTCTTTTATTACATAATTTTTTATTTGGACCATTAACCTCTTTTGAAAAAAT
131 AATCTTTTGAGTCCTCTTTTATTACATAATTTTTTATTTGGACCATTAACCTCTTTTGAAAAAAT
7741089 TCTTTTCCTCTTTTGGATTAG
196 TCTTTTCCTCTTTTGGATTAG
7741110 GTTT
1 GTTT
7741114 GAATTTTTTA
Statistics
Matches: 220, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
216 9 0.04
217 211 0.96
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.41
Consensus pattern (216 bp):
GTTTTGGGCCTTTTAATCCTTTTTTTTTATAACCTCAAACCTTAACCTACATCACAACCTTTGAA
AAATCCATATTGAATCAAGCATGGAGGCTTAAAATTGAAGAGTTTCACTTGGAAAAATGGCCATG
AATCTTTTGAGTCCTCTTTTATTACATAATTTTTTATTTGGACCATTAACCTCTTTTGAAAAAAT
TCTTTTCCTCTTTTGGATTAG
Found at i:7742092 original size:33 final size:33
Alignment explanation
Indices: 7742033--7742248 Score: 116
Period size: 33 Copynumber: 6.5 Consensus size: 33
7742023 GTTGACCCTT
* * *
7742033 AATCTTAAGCCCAATTTATCTAGCCCCCAAAGA
1 AATCTTAAGCCCAGTTTAACTGGCCCCCAAAGA
*
7742066 AATCTTAAACCCAGTTTAACTGGCCCCCAATA-A
1 AATCTTAAGCCCAGTTTAACTGGCCCCCAA-AGA
* * * * ** *
7742099 AATTTTAAGCCTAGTTGAATTGATCCCCAATGA
1 AATCTTAAGCCCAGTTTAACTGGCCCCCAAAGA
* * * * * ** *
7742132 TATTTTAAGCCAATTTTATCTGGCCCTTAATGA
1 AATCTTAAGCCCAGTTTAACTGGCCCCCAAAGA
* * * *
7742165 AATCTTAAGCCTAGTTTAATTGACCCTCAATA-A
1 AATCTTAAGCCCAGTTTAACTGGCCCCCAA-AGA
* * **
7742198 AAT-TTAAACCCAGTTTATCTGGCCTTCAAAGAA
1 AATCTTAAGCCCAGTTTAACTGGCCCCCAAAG-A
*
7742231 AGAT-TTAAGCCCAATTTA
1 A-ATCTTAAGCCCAGTTTA
7742249 TCTAGTTTAG
Statistics
Matches: 138, Mismatches: 39, Indels: 11
0.73 0.21 0.06
Matches are distributed among these distances:
31 1 0.01
32 20 0.14
33 102 0.74
34 15 0.11
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.31
Consensus pattern (33 bp):
AATCTTAAGCCCAGTTTAACTGGCCCCCAAAGA
Found at i:7742128 original size:66 final size:64
Alignment explanation
Indices: 7742057--7742221 Score: 179
Period size: 66 Copynumber: 2.5 Consensus size: 64
7742047 TTTATCTAGC
* *
7742057 CCCCAAAGAAATCTTAAACCCAGTTTAACTGGCCCCCAATAAAATTTTAAGCCTAGTTGAATTGA
1 CCCCAAAGAAAT-TTAAACCCAGTTTATCTGGCCCCCAATAAAATCTTAAGCCTAGTTGAATTGA
* * * * * ** * *
7742122 TCCCCAATGATATTTTAAGCCAATTTTATCTGGCCCTTAATGAAATCTTAAGCCTAGTTTAATTG
1 -CCCCAAAGA-AATTTAAACCCAGTTTATCTGGCCCCCAATAAAATCTTAAGCCTAGTTGAATTG
7742187 A
64 A
7742188 CCCTCAATA-AAATTTAAACCCAGTTTATCTGGCC
1 CCC-CAA-AGAAATTTAAACCCAGTTTATCTGGCC
7742222 TTCAAAGAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 7
0.78 0.16 0.07
Matches are distributed among these distances:
65 23 0.29
66 55 0.69
67 2 0.03
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.32
Consensus pattern (64 bp):
CCCCAAAGAAATTTAAACCCAGTTTATCTGGCCCCCAATAAAATCTTAAGCCTAGTTGAATTGA
Found at i:7742239 original size:66 final size:66
Alignment explanation
Indices: 7742057--7742241 Score: 166
Period size: 66 Copynumber: 2.8 Consensus size: 66
7742047 TTTATCTAGC
* * ** *
7742057 CCCCAAAG-AAATCTTAAACCCAGTTTAACTGGCCCCCAATA-AAATTTTAAGCCTAGTTGAATT
1 CCCCAATGAAAAT-TTAAACCCAGTTTATCTGGCCTTCAA-AGAAAATTTAAGCCTAGTTGAATT
7742120 GAT
64 GAT
* * * * * * *
7742123 CCCCAATGATATTTTAAGCCAATTTTATCTGGCCCTT-AATG-AAATCTTAAGCCTAGTTTAATT
1 CCCCAATGAAAATTTAAACCCAGTTTATCTGG-CCTTCAAAGAAAAT-TTAAGCCTAGTTGAATT
7742186 GA-
64 GAT
7742188 CCCTCAAT-AAAATTTAAACCCAGTTTATCTGGCCTTCAAAGAAAGATTTAAGCC
1 CCC-CAATGAAAATTTAAACCCAGTTTATCTGGCCTTCAAAGAAA-ATTTAAGCC
7742242 CAATTTATCT
Statistics
Matches: 93, Mismatches: 18, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
64 4 0.04
65 28 0.30
66 55 0.59
67 6 0.06
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.31
Consensus pattern (66 bp):
CCCCAATGAAAATTTAAACCCAGTTTATCTGGCCTTCAAAGAAAATTTAAGCCTAGTTGAATTGA
T
Found at i:7742287 original size:33 final size:33
Alignment explanation
Indices: 7742250--7742313 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
7742240 CCCAATTTAT
*
7742250 CTAGTTTAGTTAG-CCCTAAATGAAATTTTAAAC
1 CTAGTTTAGTTAGTCCCT-AATGAAATCTTAAAC
* *
7742283 CTAGTTTATTTGGTCCCTAATGAAATCTTAA
1 CTAGTTTAGTTAGTCCCTAATGAAATCTTAA
7742314 GCTCAGTTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 23 0.85
34 4 0.15
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (33 bp):
CTAGTTTAGTTAGTCCCTAATGAAATCTTAAAC
Found at i:7742416 original size:33 final size:32
Alignment explanation
Indices: 7742332--7742489 Score: 133
Period size: 33 Copynumber: 4.8 Consensus size: 32
7742322 GGCTGGTCTT
**
7742332 CAATGAAATTTAAGTCC-AGTTTATCTAGCCTT
1 CAATGAAATTTAAG-CCTAGTTTATCTAGCCCC
* *
7742364 TAAAGAAAGATTTAAGCCTAGTTTATCTAGCCCC
1 CAATG-AA-ATTTAAGCCTAGTTTATCTAGCCCC
* * *
7742398 CAATGAAATTTTAAGCCTAGCTTATCTTGCCTC
1 CAATGAAA-TTTAAGCCTAGTTTATCTAGCCCC
* * * *
7742431 TAATGAAATTTTAAG-CTCAGTTTAGCAAGCCCT
1 CAATGAAA-TTTAAGCCT-AGTTTATCTAGCCCC
7742464 CAAT-AAGATTTAAGCCTAGTTTATCT
1 CAATGAA-ATTTAAGCCTAGTTTATCT
7742490 TGCACCATAG
Statistics
Matches: 100, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
32 21 0.21
33 56 0.56
34 23 0.23
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (32 bp):
CAATGAAATTTAAGCCTAGTTTATCTAGCCCC
Found at i:7742502 original size:131 final size:130
Alignment explanation
Indices: 7742250--7742544 Score: 296
Period size: 131 Copynumber: 2.3 Consensus size: 130
7742240 CCCAATTTAT
** * *
7742250 CTAGTTTAGT-TAGCCCTAAATGAAATTTTAAACCTAGTTTATTTGGTCCCTAATGAAATCTTAA
1 CTAGTTTA-TCTAGCCCCCAATGAAATTTTAAGCCTAGCTTATTTGGTCCCTAATGAAATCTTAA
* ** * * *
7742314 GCTCAGTTGGCTGGTCTTCAATGAAATTTAAGTCCAGTTTATCTAGCCTTTAAAGAAAGATTTAA
65 GCTCAGTTAGCAAGCCCTCAATGAAATTTAAGTCCAGTTTATCTAGCC-TCAAAGAAAGATTTAA
7742379 GC
129 GC
*
7742381 CTAGTTTATCTAGCCCCCAATGAAATTTTAAGCCTAGCTTATCTT-G-CCTCTAATGAAATTTTA
1 CTAGTTTATCTAGCCCCCAATGAAATTTTAAGCCTAGCTTAT-TTGGTCC-CTAATGAAATCTTA
* *
7742444 AGCTCAGTTTAGCAAGCCCTCAAT-AAGATTTAAG-CCTAGTTTATCTTGCAC-CATAGAAAGAT
64 AGCTCAG-TTAGCAAGCCCTCAATGAA-ATTTAAGTCC-AGTTTATCTAGC-CTCAAAGAAAGAT
7742506 TTAAGC
125 TTAAGC
* * * *** *
7742512 CCAGATTAGCTAGTATCCAATGAAGTTTTAAGC
1 CTAGTTTATCTAGCCCCCAATGAAATTTTAAGC
7742545 TTAGTTTAGC
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
130 3 0.02
131 102 0.74
132 31 0.23
133 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (130 bp):
CTAGTTTATCTAGCCCCCAATGAAATTTTAAGCCTAGCTTATTTGGTCCCTAATGAAATCTTAAG
CTCAGTTAGCAAGCCCTCAATGAAATTTAAGTCCAGTTTATCTAGCCTCAAAGAAAGATTTAAGC
Found at i:7742509 original size:65 final size:65
Alignment explanation
Indices: 7742332--7742578 Score: 175
Period size: 66 Copynumber: 3.8 Consensus size: 65
7742322 GGCTGGTCTT
* * * * *
7742332 CAATGAAA-TTTAAGTCC-AGTTTATCTAGCCTTTAAAGAAAGATTTAAGCCTAGTTTATCTAGC
1 CAATGAAATTTTAAG-CCTAGCTTATCTTGCCTCT-AAGAAAGATTTAAGCC-AGTTTAGCAAGC
7742395 CCC
63 CCC
*
7742398 CAATGAAATTTTAAGCCTAGCTTATCTTGCCTCTAATGAAA-TTTTAAGCTCAGTTTAGCAAGCC
1 CAATGAAATTTTAAGCCTAGCTTATCTTGCCTCTAA-GAAAGATTTAAGC-CAGTTTAGCAAGCC
*
7742462 CT
64 CC
* * *
7742464 CAAT-AAGA-TTTAAGCCTAGTTTATCTTGCAC-C-ATAGAAAGATTTAAGCCCAGATTAGCTAG
1 CAATGAA-ATTTTAAGCCTAGCTTATCTTGC-CTCTA-AGAAAGATTTAAG-CCAGTTTAGCAAG
***
7742525 TATC
62 CCCC
* * * * * * *
7742529 CAATGAAGTTTTAAGCTTAGTTTAGCTGGCCTTTAAAGAAAGATGTAAGC
1 CAATGAAATTTTAAGCCTAGCTTATCTTGCCTCT-AAGAAAGATTTAAGC
7742579 TTGGTTTAGC
Statistics
Matches: 146, Mismatches: 21, Indels: 28
0.75 0.11 0.14
Matches are distributed among these distances:
64 5 0.03
65 45 0.31
66 59 0.40
67 36 0.25
68 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (65 bp):
CAATGAAATTTTAAGCCTAGCTTATCTTGCCTCTAAGAAAGATTTAAGCCAGTTTAGCAAGCCCC
Found at i:7742509 original size:98 final size:98
Alignment explanation
Indices: 7742370--7742554 Score: 230
Period size: 98 Copynumber: 1.9 Consensus size: 98
7742360 CCTTTAAAGA
* * * * * * * *
7742370 AAGATTTAAGCCTAGTTTATCTAGCCCCCAATGAAATTTTAAGCCTAGCTTATCTTGCCTCTAAT
1 AAGATTTAAGCCTAGTTTATCTAGCCACCAATGAAAATTTAAGCCCAGATTAGCTAGCATCCAAT
7742435 GAAATTTTAAGCTCAGTTTAGCAAGCCCTCAAT
66 GAAATTTTAAGCTCAGTTTAGCAAGCCCTCAAT
* *
7742468 AAGATTTAAGCCTAGTTTATCTTG-CACC-ATAGAAAGATTTAAGCCCAGATTAGCTAGTATCCA
1 AAGATTTAAGCCTAGTTTATCTAGCCACCAAT-GAAA-ATTTAAGCCCAGATTAGCTAGCATCCA
* *
7742531 ATGAAGTTTTAAGCTTAGTTTAGC
64 ATGAAATTTTAAGCTCAGTTTAGC
7742555 TGGCCTTTAA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
96 2 0.03
97 7 0.10
98 64 0.88
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (98 bp):
AAGATTTAAGCCTAGTTTATCTAGCCACCAATGAAAATTTAAGCCCAGATTAGCTAGCATCCAAT
GAAATTTTAAGCTCAGTTTAGCAAGCCCTCAAT
Found at i:7742633 original size:32 final size:33
Alignment explanation
Indices: 7742597--7742666 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 33
7742587 GCTTGCACCC
*
7742597 AATTTTAAGCCCAATTT-TCTGGCCCTCAATAA
1 AATTTTAAGCCCAATTTAGCTGGCCCTCAATAA
* * * *
7742629 AATTTTAAGCCTAGTTTAGCTGGCCCTCGATGA
1 AATTTTAAGCCCAATTTAGCTGGCCCTCAATAA
7742662 AATTT
1 AATTT
7742667 AAACCCAGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 15 0.47
33 17 0.53
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (33 bp):
AATTTTAAGCCCAATTTAGCTGGCCCTCAATAA
Found at i:7742668 original size:32 final size:33
Alignment explanation
Indices: 7742597--7742678 Score: 87
Period size: 32 Copynumber: 2.5 Consensus size: 33
7742587 GCTTGCACCC
* * *
7742597 AATTTTAAGCCCAATTT-TCTGGCCCTCAATAA
1 AATTTTAAACCCAGTTTAGCTGGCCCTCAATAA
* * * *
7742629 AATTTTAAGCCTAGTTTAGCTGGCCCTCGATGA
1 AATTTTAAACCCAGTTTAGCTGGCCCTCAATAA
7742662 AA-TTTAAACCCAGTTTA
1 AATTTTAAACCCAGTTTA
7742679 TTTGGTGCCA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
32 28 0.67
33 14 0.33
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.34
Consensus pattern (33 bp):
AATTTTAAACCCAGTTTAGCTGGCCCTCAATAA
Found at i:7742897 original size:37 final size:37
Alignment explanation
Indices: 7742766--7742936 Score: 102
Period size: 37 Copynumber: 4.7 Consensus size: 37
7742756 GGTGTTGCCT
* * *
7742766 CGATCGATTCTTTA-TTTTTAACTT-ATAGTGTTATTC
1 CGATCGATTTTTTATTTTTTAACTTGAGA-TGTTATCC
* * * * * *
7742802 TGATCGA-TTTTTATTTTTCAAC-TAACAATGTTGTCT
1 CGATCGATTTTTTATTTTTTAACTTGA-GATGTTATCC
* * ** * *
7742838 CGGTCG-TTCTTTATAATTTAACTTGCGATTTTATCC
1 CGATCGATTTTTTATTTTTTAACTTGAGATGTTATCC
* * *
7742874 C-AGTTGATTTTTTATTTTTTAACTTGAGGTGTTATCT
1 CGA-TCGATTTTTTATTTTTTAACTTGAGATGTTATCC
*
7742911 CGATCGATTTTTTATTTTTTGACTTG
1 CGATCGATTTTTTATTTTTTAACTTG
7742937 TTGTGTTGTC
Statistics
Matches: 97, Mismatches: 30, Indels: 15
0.68 0.21 0.11
Matches are distributed among these distances:
35 6 0.06
36 43 0.44
37 47 0.48
38 1 0.01
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.53
Consensus pattern (37 bp):
CGATCGATTTTTTATTTTTTAACTTGAGATGTTATCC
Found at i:7742961 original size:36 final size:37
Alignment explanation
Indices: 7742757--7743080 Score: 184
Period size: 36 Copynumber: 8.9 Consensus size: 37
7742747 TCGATTTGTG
* * **
7742757 GTGTTGCCTCGATCGATTCTTTA-TTTTTAACTTATA
1 GTGTTGTCTCGATCGATTCTTTATTTTTTGACTTGCA
* ** **
7742793 GTGTTAT-TCTGATCGATT-TTTATTTTTCAACTAACA
1 GTGTTGTCTC-GATCGATTCTTTATTTTTTGACTTGCA
* * ** *
7742829 ATGTTGTCTCGGTCG-TTCTTTATAATTTAACTTGC-
1 GTGTTGTCTCGATCGATTCTTTATTTTTTGACTTGCA
* * * * * *
7742864 GATTTTATC-CCAGTTGATTTTTTATTTTTTAACTTG-A
1 G-TGTTGTCTCGA-TCGATTCTTTATTTTTTGACTTGCA
* * **
7742901 GGTGTTATCTCGATCGATTTTTTATTTTTTGACTTGTT
1 -GTGTTGTCTCGATCGATTCTTTATTTTTTGACTTGCA
* * * *
7742939 GTGTTGTCCCAATC-ATTCTTTATTATTTGATTTGCA
1 GTGTTGTCTCGATCGATTCTTTATTTTTTGACTTGCA
* ** *
7742975 ATGTTGTC-CTGATCGA-TCTTTATTTTTTGACTCACG
1 GTGTTGTCTC-GATCGATTCTTTATTTTTTGACTTGCA
* * * * *
7743011 GTGTTGTCTCGATC-ATTTTTTATTCTTCGATTTGTA
1 GTGTTGTCTCGATCGATTCTTTATTTTTTGACTTGCA
*
7743047 GTGTTGTCTCGATCGATACTTTATTTTTTGACTT
1 GTGTTGTCTCGATCGATTCTTTATTTTTTGACTT
7743081 ACGGTGTCAT
Statistics
Matches: 216, Mismatches: 56, Indels: 31
0.71 0.18 0.10
Matches are distributed among these distances:
35 11 0.05
36 130 0.60
37 72 0.33
38 3 0.01
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.52
Consensus pattern (37 bp):
GTGTTGTCTCGATCGATTCTTTATTTTTTGACTTGCA
Found at i:7743015 original size:72 final size:72
Alignment explanation
Indices: 7742903--7743087 Score: 219
Period size: 72 Copynumber: 2.5 Consensus size: 72
7742893 TAACTTGAGG
* * *** *
7742903 TGTTATCTCGATCGATTTTTTATTTTTTGACTTGTTGTGTTGTCCCAATCATTCTTTATTATTTG
1 TGTTGTCTCGATCGA-TCTTTATTTTTTGACTTACGGTGTTGTCCCAATCATTCTTTATTATTCG
7742968 ATTTGCAA
65 ATTTGCAA
* * * * *
7742976 TGTTGTC-CTGATCGATCTTTATTTTTTGACTCACGGTGTTGTCTCGATCATTTTTTATTCTTCG
1 TGTTGTCTC-GATCGATCTTTATTTTTTGACTTACGGTGTTGTCCCAATCATTCTTTATTATTCG
* *
7743040 ATTTGTAG
65 ATTTGCAA
7743048 TGTTGTCTCGATCGATACTTTATTTTTTGACTTACGGTGT
1 TGTTGTCTCGATCGAT-CTTTATTTTTTGACTTACGGTGT
7743088 CATCCCAGTT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
72 60 0.63
73 35 0.37
ACGTcount: A:0.16, C:0.15, G:0.17, T:0.52
Consensus pattern (72 bp):
TGTTGTCTCGATCGATCTTTATTTTTTGACTTACGGTGTTGTCCCAATCATTCTTTATTATTCGA
TTTGCAA
Found at i:7744400 original size:20 final size:20
Alignment explanation
Indices: 7744375--7744414 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7744365 TGTTTTTTTT
7744375 TTTTTTATAAGAAGAGTTTG
1 TTTTTTATAAGAAGAGTTTG
* * *
7744395 TTTTTTTTAGGAAGGGTTTG
1 TTTTTTATAAGAAGAGTTTG
7744415 AAGTGAAATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.53
Consensus pattern (20 bp):
TTTTTTATAAGAAGAGTTTG
Found at i:7744731 original size:20 final size:21
Alignment explanation
Indices: 7744708--7744754 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
7744698 TTTATTTTTC
*
7744708 TTATATATTTGT-TATTATTA
1 TTATATATTGGTGTATTATTA
*
7744728 TTAT-TATTGGTGTGTTATTA
1 TTATATATTGGTGTATTATTA
7744748 TTGATAT
1 TT-ATAT
7744755 TTTAATTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 6 0.27
20 13 0.59
21 2 0.09
22 1 0.05
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.62
Consensus pattern (21 bp):
TTATATATTGGTGTATTATTA
Found at i:7745007 original size:10 final size:10
Alignment explanation
Indices: 7744992--7745029 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
7744982 AATTTAAAAT
7744992 AATAATAATA
1 AATAATAATA
7745002 AATAATAAATA
1 AATAAT-AATA
7745013 AATAA-AATA
1 AATAATAATA
7745022 GAATAATA
1 -AATAATA
7745030 CAAAAAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 4 0.16
10 11 0.44
11 10 0.40
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (10 bp):
AATAATAATA
Found at i:7745010 original size:21 final size:22
Alignment explanation
Indices: 7744986--7745038 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
7744976 TTTGGAAATT
7744986 TAAAAT-AATAATAATA-AATAA
1 TAAAATAAATAA-AATAGAATAA
7745007 T-AAATAAATAAAATAGAATAA
1 TAAAATAAATAAAATAGAATAA
*
7745028 TACAAAAAAAT
1 TA-AAATAAAT
7745039 CTAAAAAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 8 0.30
21 12 0.44
23 7 0.26
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (22 bp):
TAAAATAAATAAAATAGAATAA
Found at i:7745460 original size:57 final size:57
Alignment explanation
Indices: 7745313--7745539 Score: 235
Period size: 57 Copynumber: 3.9 Consensus size: 57
7745303 CATTTTCTTG
* * * * * * *
7745313 AAACCTTAACCCCAAACCCTAAAGTTAAAACCTTAAACCCTCTAAACCC-AAAA-AT
1 AAACCTAAACCTCAAACCTTAAAATCAAAACCCTAAACCCTTTAAACCCTAAAACAT
* * *
7745368 CCAAACCCTAAACCCTCAAAACCCTAAAA-CTAAAACTCTAAACCCTTTAAATCCTAAAACAT
1 --AAA-CCTAAA-CCTC-AAACCTTAAAATC-AAAACCCTAAACCCTTTAAACCCTAAAACAT
* *
7745430 AATCCTAAACCTCAAACCTTAAAATCAAAACCCTAAACCTTTTAAACCCTAAAACAT
1 AAACCTAAACCTCAAACCTTAAAATCAAAACCCTAAACCCTTTAAACCCTAAAACAT
* * **
7745487 AAACCTGAACCTCAAACCTTAAAATCAAAACCCTAAACCATCCAAACCCTAAA
1 AAACCTAAACCTCAAACCTTAAAATCAAAACCCTAAACCCTTTAAACCCTAAA
7745540 CCCTTTAAAC
Statistics
Matches: 145, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
57 89 0.61
58 10 0.07
59 9 0.06
60 31 0.21
61 4 0.03
62 2 0.01
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.19
Consensus pattern (57 bp):
AAACCTAAACCTCAAACCTTAAAATCAAAACCCTAAACCCTTTAAACCCTAAAACAT
Found at i:7745483 original size:30 final size:30
Alignment explanation
Indices: 7745325--7745539 Score: 171
Period size: 30 Copynumber: 7.4 Consensus size: 30
7745315 ACCTTAACCC
* * *
7745325 CAAACCCTAAAGTTAAAACCTTAAACCC-T
1 CAAACCCTAAAATCAAAACCCTAAACCCTT
* *
7745354 CTAAACCCAAAAATCCAAACCCTAAACCC-T
1 C-AAACCCTAAAATCAAAACCCTAAACCCTT
*
7745384 CAAAACCCTAAAA-CTAAAACTCTAAACCCTT
1 C-AAACCCTAAAATC-AAAACCCTAAACCCTT
* * * *
7745415 TAAATCCTAAAA-CATAATCCTAAA-CC-T
1 CAAACCCTAAAATCAAAACCCTAAACCCTT
* *
7745442 CAAACCTTAAAATCAAAACCCTAAACCTTT
1 CAAACCCTAAAATCAAAACCCTAAACCCTT
* *
7745472 TAAACCCTAAAA-CATAAA-CCTGAA-CC-T
1 CAAACCCTAAAATCA-AAACCCTAAACCCTT
* * *
7745499 CAAACCTTAAAATCAAAACCCTAAACCATC
1 CAAACCCTAAAATCAAAACCCTAAACCCTT
7745529 CAAACCCTAAA
1 CAAACCCTAAA
7745540 CCCTTTAAAC
Statistics
Matches: 145, Mismatches: 30, Indels: 21
0.74 0.15 0.11
Matches are distributed among these distances:
27 24 0.17
28 20 0.14
29 19 0.13
30 81 0.56
31 1 0.01
ACGTcount: A:0.48, C:0.32, G:0.01, T:0.19
Consensus pattern (30 bp):
CAAACCCTAAAATCAAAACCCTAAACCCTT
Found at i:7745564 original size:30 final size:30
Alignment explanation
Indices: 7745514--7745725 Score: 169
Period size: 30 Copynumber: 6.9 Consensus size: 30
7745504 CTTAAAATCA
*
7745514 AAACCCTAAACCATCCAAACCCTAAACCCTTT
1 AAACCCTAAA--ATCAAAACCCTAAACCCTTT
* *
7745546 AAACCTTAAAA-CTAAAACCCTAAAACCTTAT
1 AAACCCTAAAATC-AAAACCCTAAACCCTT-T
* * * * * *
7745577 AAATCTTAAAATCGAAATCTTAAACTCTTT
1 AAACCCTAAAATCAAAACCCTAAACCCTTT
*
7745607 AAACCCTAAAATCAAAATCCTAAACCCTTT
1 AAACCCTAAAATCAAAACCCTAAACCCTTT
* * * *
7745637 GAACCCTAAAATTAAAACCTTAAAACCTTTT
1 AAACCCTAAAATCAAAACCCT-AAACCCTTT
* *
7745668 AATCCCTAAAATCAAAACCTTAAA-CCTTT
1 AAACCCTAAAATCAAAACCCTAAACCCTTT
* * *
7745697 CAAACTCTAAAA-CCAACCCCTTAAACCCT
1 -AAACCCTAAAATCAAAACCC-TAAACCCT
7745726 CAAAACTTAA
Statistics
Matches: 145, Mismatches: 28, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
29 10 0.07
30 74 0.51
31 51 0.35
32 10 0.07
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.25
Consensus pattern (30 bp):
AAACCCTAAAATCAAAACCCTAAACCCTTT
Found at i:7745630 original size:91 final size:91
Alignment explanation
Indices: 7745514--7745725 Score: 241
Period size: 91 Copynumber: 2.3 Consensus size: 91
7745504 CTTAAAATCA
* *
7745514 AAACCCTAAACCATCCAAACCCTAAACCCTTTAAACCTTAAAACTAAAACCCTAAAACCTTATAA
1 AAACCCTAAA--ATCAAAACCCTAAACCCTTTAAACCCTAAAACTAAAACCCTAAAACCTT-TAA
* * *
7745579 AT-CTTAAAATCGAAATCTTAAACTCTTT-
63 ATCCCTAAAATCAAAACCTTAAAC-CTTTC
* * * * *
7745607 AAACCCTAAAATCAAAATCCTAAACCCTTTGAACCCTAAAATTAAAACCTTAAAACCTTTTAATC
1 AAACCCTAAAATCAAAACCCTAAACCCTTTAAACCCTAAAACTAAAACCCTAAAACCTTTAAATC
7745672 CCTAAAATCAAAACCTTAAACCTTTC
66 CCTAAAATCAAAACCTTAAACCTTTC
* * *
7745698 AAACTCTAAAA-CCAACCCCTTAAACCCT
1 AAACCCTAAAATCAAAACCC-TAAACCCT
7745726 CAAAACTTAA
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
90 13 0.13
91 79 0.77
93 10 0.10
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.25
Consensus pattern (91 bp):
AAACCCTAAAATCAAAACCCTAAACCCTTTAAACCCTAAAACTAAAACCCTAAAACCTTTAAATC
CCTAAAATCAAAACCTTAAACCTTTC
Found at i:7745719 original size:61 final size:61
Alignment explanation
Indices: 7745537--7745721 Score: 146
Period size: 61 Copynumber: 3.0 Consensus size: 61
7745527 TCCAAACCCT
* * * * * * * * *
7745537 AAACCCTTTAAACCTTAAAA-CTAAAACCCTAAAACCTTATAAATCTTAAAATCGAAATCTT-
1 AAACCTTTTAAACCCTAAAATC-AAAATCCTAAACCCTT-TAAACCCTAAAACCAAAACCTTA
* **
7745598 AAA-CTCTTTAAACCCTAAAATCAAAATCCTAAACCCTTTGAACCCTAAAATTAAAACCTTA
1 AAACCT-TTTAAACCCTAAAATCAAAATCCTAAACCCTTTAAACCCTAAAACCAAAACCTTA
* * **
7745659 AAACCTTTTAATCCCTAAAATCAAAA-CCTTAAA-CCTTTCAAACTCTAAAACCAACCCCTTA
1 AAACCTTTTAAACCCTAAAATCAAAATCC-TAAACCCTTT-AAACCCTAAAACCAAAACCTTA
7745720 AA
1 AA
7745722 CCCTCAAAAC
Statistics
Matches: 101, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
60 24 0.24
61 74 0.73
62 3 0.03
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.26
Consensus pattern (61 bp):
AAACCTTTTAAACCCTAAAATCAAAATCCTAAACCCTTTAAACCCTAAAACCAAAACCTTA
Found at i:7745732 original size:30 final size:28
Alignment explanation
Indices: 7745685--7745740 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 28
7745675 AAAATCAAAA
*
7745685 CCTTAAACCTTTCAAACTCTAAAACCAACC
1 CCTTAAACCTCTCAAACT-T-AAACCAACC
7745715 CCTTAAACC-CTCAAAACTTAAACCAA
1 CCTTAAACCTCTC-AAACTTAAACCAA
7745741 AACTCTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 7 0.29
29 3 0.12
30 14 0.58
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (28 bp):
CCTTAAACCTCTCAAACTTAAACCAACC
Found at i:7749974 original size:10 final size:11
Alignment explanation
Indices: 7749961--7749989 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7749951 TATTTATCTT
7749961 TTTTTATT-GA
1 TTTTTATTCGA
7749971 TTTTTATTCGA
1 TTTTTATTCGA
7749982 TTTTTATT
1 TTTTTATT
7749990 TAAATTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.44
11 10 0.56
ACGTcount: A:0.17, C:0.03, G:0.07, T:0.72
Consensus pattern (11 bp):
TTTTTATTCGA
Found at i:7752733 original size:22 final size:21
Alignment explanation
Indices: 7752703--7752746 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
7752693 AAAATTTATC
7752703 ATTTCATTAATATAGTATTTTA
1 ATTTCATTAATATA-TATTTTA
* * *
7752725 ATTTTATTATTTTATATTTTA
1 ATTTCATTAATATATATTTTA
7752746 A
1 A
7752747 AAATAAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
ATTTCATTAATATATATTTTA
Found at i:7752793 original size:29 final size:30
Alignment explanation
Indices: 7752756--7752827 Score: 71
Period size: 29 Copynumber: 2.4 Consensus size: 30
7752746 AAAATAAATA
7752756 AAATT-TAATATA-TAATTCAAATTTCA-A-T
1 AAATTATAATATATTAA-TCAAATTT-ATATT
* *
7752784 AAATTATAATTTATTGATCAAATTTATTATT
1 AAATTATAATATATTAATCAAATTTA-TATT
7752815 AAATTATAATATA
1 AAATTATAATATA
7752828 ATATAAATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
28 6 0.17
29 14 0.39
30 3 0.08
31 13 0.36
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (30 bp):
AAATTATAATATATTAATCAAATTTATATT
Found at i:7753771 original size:20 final size:20
Alignment explanation
Indices: 7753723--7753771 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
7753713 AAAGAGTTAA
*
7753723 CATAAAATAGTGAGAATAAT
1 CATAAAATTGTGAGAATAAT
7753743 CATAAAATTGTGAGAATAAT
1 CATAAAATTGTGAGAATAAT
*
7753763 CATAGAATT
1 CATAAAATT
7753772 AGTATTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (20 bp):
CATAAAATTGTGAGAATAAT
Found at i:7754084 original size:216 final size:215
Alignment explanation
Indices: 7753773--7754202 Score: 478
Period size: 216 Copynumber: 2.0 Consensus size: 215
7753763 CATAGAATTA
* *
7753773 GTATTATTTAACGTAAAATTGTTAGAAGTATCATTACACCTTAGAAAAAAATTATAATAATTATA
1 GTATTATTTAACATAAAATTGTTAGAAGTATCATAACACCTTAGAAAAAAATTATAATAATTATA
* ** *
7753838 AACGTAATAAAAAATACTAATAAATGTAAAAAGATATTATTGAAACAT-AATAACTT-AGTAAC-
66 AACATAATAAAAAATAAGAACAAATGT-AAAAGATATTATTGAAACATAAATAA-TTAAGTAACA
* * *
7753900 GTA-AAAAAAATTAGTATTATAAAT-AAAATATAATTTTAAAC-CAAAAAATAAGTGTTAACATA
129 ATAGAAAAAAA-T--TATTATAAATCAAAA-ATAATTCTAAACAAAAAAAATAAGTGTTAACATA
7753962 AAAAAGTGAGAATAATAGTAAAACTG
190 AAAAAGTGAGAATAATAGTAAAACTG
* * * * * *
7753988 GTATTATTTGACATAAAATATGTTAGAAGTATCGTAACACTTTA-AGAAAAAATTGTGATAATTT
1 GTATTATTTAACATAAAAT-TGTTAGAAGTATCATAACACCTTAGA-AAAAAATTATAATAATTA
* * * * * * *
7754052 TAAATATAATAAAAAATAAGAACAAGTGTAAAAGATTTTATTGTAACGTAAATAATTCAATTGAC
64 TAAACATAATAAAAAATAAGAACAAATGTAAAAGATATTATTGAAACATAAATAATT-AAGTAAC
* * *
7754117 AATATGAAAAAAATTATTATAAGTCAAAAGTAATTCTAAACAAAAAAAATACGTGTTAACATAAA
128 AATA-GAAAAAAATTATTATAAATCAAAAATAATTCTAAACAAAAAAAATAAGTGTTAACATAAA
* *
7754182 AATGTGAGAATAATTGTAAAA
192 AAAGTGAGAATAATAGTAAAA
7754203 TTAAAATAAT
Statistics
Matches: 178, Mismatches: 27, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
215 37 0.21
216 64 0.36
217 23 0.13
218 46 0.26
219 1 0.01
220 7 0.04
ACGTcount: A:0.53, C:0.06, G:0.10, T:0.31
Consensus pattern (215 bp):
GTATTATTTAACATAAAATTGTTAGAAGTATCATAACACCTTAGAAAAAAATTATAATAATTATA
AACATAATAAAAAATAAGAACAAATGTAAAAGATATTATTGAAACATAAATAATTAAGTAACAAT
AGAAAAAAATTATTATAAATCAAAAATAATTCTAAACAAAAAAAATAAGTGTTAACATAAAAAAG
TGAGAATAATAGTAAAACTG
Found at i:7754903 original size:19 final size:17
Alignment explanation
Indices: 7754854--7754904 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
7754844 AAAAATTAGC
7754854 ATTATAAATAAAAAATA
1 ATTATAAATAAAAAATA
* *
7754871 ATTCTAAACCAAAAAATA
1 ATTATAAA-TAAAAAATA
7754889 ATTATTAAAGTAAAAA
1 ATTA-TAAA-TAAAAA
7754905 TATGAAAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 7 0.26
18 11 0.41
19 9 0.33
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (17 bp):
ATTATAAATAAAAAATA
Found at i:7754946 original size:214 final size:218
Alignment explanation
Indices: 7754420--7754946 Score: 541
Period size: 214 Copynumber: 2.4 Consensus size: 218
7754410 AAGAATAATT
* * * *
7754420 ATTAGAAATAAATAATAATTCTAAACCAAAAAATAAGTATTAATATAAAAAAGGTGAAAGTAATT
1 ATTATAAATAAAAAATAATTCTAAACCAAAAAATAATTATTAATATAAAAAA--TGAAAATAATT
* * * * * *
7754485 GTAAAATTAGTATTATTTGGCATAAAATGGTTAGAAATGTCACAACACCTTTAAGAAAAAATTAT
64 ATAAAATTAGTATTATTTGACATAAAATAGTTAGAAATATCACAACACCATTAACAAAAAATTAT
* * * ** *
7754550 GATAATTCTTAATATAATGAAAGGCAACAACAAGTGTAAAAAAAAATTATTATAATATAACTAAT
129 AATAATTCTTAACATAATGAAAAGCAACAACAAACGTAAAAAAAAACTATTATAATAT-ACTAAT
* **
7754615 TAAGTTGGTAATGTAAAAAAATTATT
193 TAAATTGGTAATGTAAAAAAATTAGC
* * * * * * * *
7754641 ATTACT-AGTAAAAAATAGTTTTAAA-CAAAAAAAAATTGTTAATATAAAACAGTGAGAATAATC
1 ATTA-TAAATAAAAAATAATTCTAAACCAAAAAATAATTATTAATATAAAA-AATGAAAATAATT
** * ** *
7754704 ATAAAATTAGTATTATTTGATGTAAAATAGTTAGAAGTATCATTACA-CATTAACAAAAAATTGT
64 ATAAAATTAGTATTATTTGACATAAAATAGTTAGAAATATCACAACACCATTAACAAAAAATTAT
* * * * * * *
7754768 AATAATT-TTAAGCGTAATGAAAAGTAACAATAAACGTAAATAGATACTATT-TAA-AT-GTAA-
129 AATAATTCTTAA-CATAATGAAAAGCAACAACAAACGTAAAAAAAAACTATTATAATATACTAAT
*
7754828 TAAATTTGTAATGTAAAAAAATTAGC
193 TAAATTGGTAATGTAAAAAAATTAGC
7754854 ATTATAAATAAAAAATAATTCTAAACCAAAAAATAATTATTAA-AGTAAAAATATGAAAATAATT
1 ATTATAAATAAAAAATAATTCTAAACCAAAAAATAATTATTAATA-TAAAAA-ATGAAAATAATT
*
7754918 ATAAAATTAGTATAATTTGACATAAAATA
64 ATAAAATTAGTATTATTTGACATAAAATA
7754947 TGTTTAAAGT
Statistics
Matches: 247, Mismatches: 52, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
212 1 0.00
213 44 0.18
214 58 0.23
216 2 0.01
217 7 0.03
218 48 0.19
219 46 0.19
220 21 0.09
221 20 0.08
ACGTcount: A:0.53, C:0.06, G:0.10, T:0.31
Consensus pattern (218 bp):
ATTATAAATAAAAAATAATTCTAAACCAAAAAATAATTATTAATATAAAAAATGAAAATAATTAT
AAAATTAGTATTATTTGACATAAAATAGTTAGAAATATCACAACACCATTAACAAAAAATTATAA
TAATTCTTAACATAATGAAAAGCAACAACAAACGTAAAAAAAAACTATTATAATATACTAATTAA
ATTGGTAATGTAAAAAAATTAGC
Found at i:7755051 original size:19 final size:20
Alignment explanation
Indices: 7755014--7755082 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
7755004 GGTAAGAATA
*
7755014 AATATAAAAAAATTTATTG-T
1 AATAT-AAAAAATTAATTGAT
* *
7755034 AATGTAAATAATTAATTGAT
1 AATATAAAAAATTAATTGAT
7755054 AATATAAAAAATT-ATT-AT
1 AATATAAAAAATTAATTGAT
7755072 AA-ATAAAAAAT
1 AATATAAAAAAT
7755083 ATTTTGAACC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
17 9 0.21
18 4 0.09
19 14 0.33
20 16 0.37
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
AATATAAAAAATTAATTGAT
Found at i:7755115 original size:19 final size:20
Alignment explanation
Indices: 7755093--7755135 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7755083 ATTTTGAACC
*
7755093 AAAAA-ATAAGTACTAAT-GT
1 AAAAATATAAG-AATAATCGT
7755112 AAAAATATAAGAATAATCGT
1 AAAAATATAAGAATAATCGT
7755132 AAAA
1 AAAA
7755136 TTGGTATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.63, C:0.05, G:0.09, T:0.23
Consensus pattern (20 bp):
AAAAATATAAGAATAATCGT
Found at i:7755486 original size:215 final size:214
Alignment explanation
Indices: 7755257--7756087 Score: 695
Period size: 215 Copynumber: 3.9 Consensus size: 214
7755247 TAAGAAAGAA
* *
7755257 TTGTGATAATTTTAAATATAATAAAATGTACGAAAAAGTGTAAAAAATATTATTGTAATGTAAAT
1 TTGTGATAATTTTAAATATAATAAAATGTAAGAAAAA-TATAAAAAATATTATTGTAATGTAAAT
* * * *
7755322 AAATAACTTGGTAATGTAAAAGAATTATTATTATAAATACAAAATAATTCTAAACAAAAAATAAA
65 AATTAAGTTGATAATGTAAAA-AATTATTATTATAAATAAAAAATAATTCTAAACAAAAAATAAA
* * * *
7755387 TGTTTATG-T-AAAAGATGAGAATAATTATAAAATTAGTAT-ATTTTATTTAAAATGATTAGAAA
129 TGTTAATGATAAAAAG-TGAGAATAATCATAAAATTAGTATCATTTGATGTAAAATGATTAGAAA
7755449 TGTTGTAACACCCTAAAAAAAAG
193 TGTT-TAACACCCTAAAAAAAAG
* * * * *
7755472 TTGTGATAATTTTAAATATAATAAAAAGTAAGAACAATCATAAAAAAATATTATTGCAGTGTCAA
1 TTGTGATAATTTTAAATATAATAAAATGTAAGAAAAAT-AT-AAAAAATATTATTGTAATGTAAA
* * *
7755537 TAATTAAGTTGACAATGTAAAAAGATTATTATTATAAAT-AAAAATAATTCTGAACACAAAAA-G
64 TAATTAAGTTGATAATGTAAAAA-ATTATTATTATAAATAAAAAATAATTCTAAACA-AAAAATA
* * * * * *
7755600 AATGTTAAAGTTAAAAATTGAAAATAGTCATAAAATTAGTATCATTTGATGTAAAATAAGTTAGA
127 AATGTTAATGATAAAAAGTGAGAATAATCATAAAATTAGTATCATTTGATGTAAAATGA-TTAGA
* * * * * *
7755665 ACTATTATAATACCATAAGAAAGAG
191 AATGTT-TAACACCCTAAAAAAAAG
* * * ** * * *
7755690 TTGTGATGATTTTAAATGT-ATAAAATGTAAGAACAAACATAAAAAA-AAAATTCTCACGTAAAT
1 TTGTGATAATTTTAAATATAATAAAATGTAAGAA-AAATATAAAAAATATTATTGTAATGTAAAT
** *
7755753 AATTAAGTTGGA-AACATAAAAGAATTATTATTATAAATAAAAAATAATTC-AATCAAAAAATAA
65 AATTAAGTT-GATAATGTAAAA-AATTATTATTATAAATAAAAAATAATTCTAAACAAAAAATAA
* * * * * * ** *** *
7755816 GTGTTTATGAAAAAAAATTAGAATAATCGTAAAATTTTTATCATTTGGCATAAAAGTATATTA-A
128 ATGTTAATGATAAAAAGTGAGAATAATCATAAAATTAGTATCATTTGATGTAAAA-T-GATTAGA
* *
7755880 AAGTGTTTTACA-CCT-TAAAAAAG
191 AA-TGTTTAACACCCTAAAAAAAAG
** * * * * * * * *
7755903 TCATAATAATTTTAAACATAATGAAATATAA-AAACAAGTGTAAAGATATATTATTATGATGTAA
1 TTGTGATAATTTTAAATATAATAAAATGTAAGAAA-AA-TATAAA-AAATATTATTGTAATGTAA
* * * *
7755967 ATAATTAAATTGATAATGT-AAAATTTATTATTATAAATAAAAAATAATTCCAAACAAAAAAAAA
63 ATAATTAAGTTGATAATGTAAAAAATTATTATTATAAATAAAAAATAATTCTAAACAAAAAATAA
** * * *
7756031 AGTGTTAA-CCTAAAAAGTAAGAATAATCATAAAATTTA-TATAATTTTATGTAAAATG
128 A-TGTTAATGATAAAAAGTGAGAATAATCATAAAA-TTAGTATCATTTGATGTAAAATG
7756088 GGCTATTGCT
Statistics
Matches: 482, Mismatches: 109, Indels: 52
0.75 0.17 0.08
Matches are distributed among these distances:
212 1 0.00
213 22 0.05
214 49 0.10
215 198 0.41
216 137 0.28
217 33 0.07
218 42 0.09
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (214 bp):
TTGTGATAATTTTAAATATAATAAAATGTAAGAAAAATATAAAAAATATTATTGTAATGTAAATA
ATTAAGTTGATAATGTAAAAAATTATTATTATAAATAAAAAATAATTCTAAACAAAAAATAAATG
TTAATGATAAAAAGTGAGAATAATCATAAAATTAGTATCATTTGATGTAAAATGATTAGAAATGT
TTAACACCCTAAAAAAAAG
Found at i:7755722 original size:711 final size:713
Alignment explanation
Indices: 7754535--7755851 Score: 1515
Period size: 711 Copynumber: 1.8 Consensus size: 713
7754525 CACAACACCT
* *
7754535 TTAAGAAAAAATTATGATAATTCTTAATATAATGAAAGGCAACAACAAGTGTAAAAAAAAATTAT
1 TTAAGAAAAAATTATGATAATTCTTAATATAATAAAAGGCAACAAAAAGTGTAAAAAAAAATTAT
* * * * * *
7754600 TATAATATAACTAATTAAGTTGGTAATGTAAAAAAATTATTATTACTAGTAAAAAATAGTTTTAA
66 TATAATATAAATAAATAACTTGGTAATGTAAAAAAATTATTATTACTAATAAAAAATAATTCTAA
7754665 ACAAAAAAAAATTGTTAATATAAAACAGTGAGAATAATCATAAAATTAGTATTATTTGATGTAAA
131 ACAAAAAAAAATTGTTAATATAAAACAGTGAGAATAATCATAAAATTAGTATTATTTGATGTAAA
* * * * * *
7754730 ATAGTTAGAAGTATCATTACACATTAACAAAAAATTGTAATAATTTTAAGCGTAATGAAAAGTAA
196 ATAGTTAGAAATATCATAACACACTAACAAAAAATTGTAATAATTTTAAACATAATAAAAAGTAA
* * * * * * *
7754795 CAATAAACGTAAATAGATACTATTTAAATGTAATAAATTTGTAATGTAAAAAAATTAGCATTATA
261 CAACAAACATAAAAAAATACTATTGAAATGTAATAAAGTTGCAATGTAAAAAAATTAGCATTATA
* *
7754860 AATAAAAAATAATTCTAAACCAAAAAATAATTATTAAAGTAAAAATATGAAAATAATTATAAAAT
326 AATAAAAAATAATTCTAAACCAAAAAAGAATTATTAAAGTAAAAATATGAAAATAATCATAAAAT
* * *
7754925 TAGTATAATTTGACATAAAATATGTTTAAAGTGTAGTAATACTTAAAAAAAAGCTATAATAATTC
391 TAGTATAATTTGACATAAAATAAGTTTAAACTGTAGTAATACATAAAAAAAAGCTATAATAATTC
* * ** * *
7754990 TAAATATAGTAAAAGGTAAGAATAAATATAAAAAAATTTATTGTAATGTAAATAATTAA-TT-GA
456 TAAATATAGTAAAAGGTAAGAACAAACATAAAAAAA-AAATTCTAACGTAAATAATTAAGTTGGA
* * * *
7755053 TA-ATATAAA-AA-ATTATTATAAATAAAAAATATTTTGAACCAAAAAATAAGTACTAATGTAAA
520 AACATA-AAAGAATATTATTATAAATAAAAAATA-ATTCAACCAAAAAATAAGTACTAATGAAAA
*
7755115 AATATAAGAATAATCGTAAAATTGGTATAATTTAACGTAACTATGTTAAAAGTATTGTAATGTAA
583 AAAATAAGAATAATCGTAAAATTGGTATAATTTAACGTAACTATGTTAAAAGTATTGTAATGTAA
7755180 AAATGTGAAAATAACCATAAAATTGATATTGTTTAGCATAAAATGGGTTAAAAGGGTTGTAATAT
648 AAATGTGAAAATAACCATAAAATTGATATTGTTTAGCATAAAATGGGTTAAAAGGGTTGTAATAT
7755245 C
713 C
* * * * *
7755246 TTAAGAAAGAATTGTGATAATT-TTAAATATAATAAAATG-TACGAAAAAGTGT-AAAAAATATT
1 TTAAGAAAAAATTATGATAATTCTT-AATATAATAAAAGGCAAC-AAAAAGTGTAAAAAAAAATT
* * * *
7755308 ATTGTAATGTAAATAAATAACTTGGTAATGTAAAAGAATTATTATTA-TAAATACAAAATAATTC
64 ATTATAATATAAATAAATAACTTGGTAATGTAAAAAAATTATTATTACT-AATAAAAAATAATTC
* * * * * *
7755372 TAAACAAAAAATAAA-TGTTTATGTAAAAGA-TGAGAATAATTATAAAATTAGTA-TATTTTATT
128 TAAACAAAAAA-AAATTGTTAATATAAAACAGTGAGAATAATCATAAAATTAGTATTATTTGATG
* ** * * *
7755434 TAAAAT-GATTAGAAATGTTGTAACACCCTAA-AAAAAAGTTGTGATAATTTTAAATATAATAAA
192 TAAAATAG-TTAGAAATATCATAACACACTAACAAAAAA-TTGTAATAATTTTAAACATAATAAA
* * * * * *
7755497 AAGTAAGAACAATCATAAAAAAATATTATTGCAGTGTCAATAATTAAGTTGACAATGTAAAAAGA
255 AAGTAACAACAAACATAAAAAAATACTATTGAAATGT-AAT-A--AAGTTG-CAATGTAAAAAAA
** * *
7755562 TTATTATTATAAAT-AAAAATAATTCTGAA-CACAAAAAGAA-TGTTAAAGTTAAAAAT-TGAAA
315 TTAGCATTATAAATAAAAAATAATTCTAAACCA-AAAAAGAATTATTAAAG-TAAAAATATGAAA
* * ** * *
7755623 ATAGTCATAAAATTAGTATCATTTGATGTAAAATAAG-TTAGAACTATTA-TAATACCATAAGAA
378 ATAATCATAAAATTAGTATAATTTGACATAAAATAAGTTTA-AACT-GTAGTAATA-CATAAAAA
* * * * * * * * *
7755686 AGAGTTGTGATGATTTTAAATGTA-TAAAATGTAAGAACAAACATAAAAAAAAAATTCTCACGTA
440 AAAGCTATAATAATTCTAAATATAGTAAAAGGTAAGAACAAACATAAAAAAAAAATTCTAACGTA
*
7755750 AATAATTAAGTTGGAAACATAAAAGAATTATTATTATAAATAAAAAATAATTCAATCAAAAAATA
505 AATAATTAAGTTGGAAACATAAAAGAA-TATTATTATAAATAAAAAATAATTCAACCAAAAAATA
** * *
7755815 AGTGTTTATGAAAAAAAATTAGAATAATCGTAAAATT
569 AGTACTAATGAAAAAAAATAAGAATAATCGTAAAATT
7755852 TTTATCATTT
Statistics
Matches: 496, Mismatches: 88, Indels: 41
0.79 0.14 0.07
Matches are distributed among these distances:
707 7 0.01
708 76 0.15
709 26 0.05
710 109 0.22
711 122 0.25
712 64 0.13
713 28 0.06
714 44 0.09
715 20 0.04
ACGTcount: A:0.52, C:0.05, G:0.11, T:0.32
Consensus pattern (713 bp):
TTAAGAAAAAATTATGATAATTCTTAATATAATAAAAGGCAACAAAAAGTGTAAAAAAAAATTAT
TATAATATAAATAAATAACTTGGTAATGTAAAAAAATTATTATTACTAATAAAAAATAATTCTAA
ACAAAAAAAAATTGTTAATATAAAACAGTGAGAATAATCATAAAATTAGTATTATTTGATGTAAA
ATAGTTAGAAATATCATAACACACTAACAAAAAATTGTAATAATTTTAAACATAATAAAAAGTAA
CAACAAACATAAAAAAATACTATTGAAATGTAATAAAGTTGCAATGTAAAAAAATTAGCATTATA
AATAAAAAATAATTCTAAACCAAAAAAGAATTATTAAAGTAAAAATATGAAAATAATCATAAAAT
TAGTATAATTTGACATAAAATAAGTTTAAACTGTAGTAATACATAAAAAAAAGCTATAATAATTC
TAAATATAGTAAAAGGTAAGAACAAACATAAAAAAAAAATTCTAACGTAAATAATTAAGTTGGAA
ACATAAAAGAATATTATTATAAATAAAAAATAATTCAACCAAAAAATAAGTACTAATGAAAAAAA
ATAAGAATAATCGTAAAATTGGTATAATTTAACGTAACTATGTTAAAAGTATTGTAATGTAAAAA
TGTGAAAATAACCATAAAATTGATATTGTTTAGCATAAAATGGGTTAAAAGGGTTGTAATATC
Found at i:7755902 original size:431 final size:432
Alignment explanation
Indices: 7755247--7756086 Score: 929
Period size: 431 Copynumber: 1.9 Consensus size: 432
7755237 TGTAATATCT
* ** ** *
7755247 TAAGAAAGAATTGTGATAATTTTAAATATAATAAAATGTACGAAAAAGTGTAAAAAATATTATTG
1 TAAGAAAGAATTGTGATAATTTTAAATATAATAAAATGTAAGAAAAAGCATAAAAAATAAAATTC
* * ** *
7755312 TAATGTAAATAAATAACTTGGTAATGTAAAAGAATTATTATTATAAATACAAAATAATTCTAAAC
66 TAACGTAAATAAATAACTTGGAAACATAAAAGAATTATTATTATAAATAAAAAATAATTCTAAAC
* * * * **
7755377 AAAAAATAAATGTTTATGTAAAAGATGAGAATAATTATAAAATTAGTATATTTTATTTAAAATGA
131 AAAAAATAAATGTTTATGAAAAAAATGAGAATAATCATAAAATTAGTATATTTGACATAAAATGA
** * * *
7755442 TTAGAAATGTTGTAACACCCTAAAAAAAAGTTGTGATAATTTTAAATATAAT-AAAAAGTAAGAA
196 TTAGAAATGTTGTAACACCCTAAAAAAAAGTCATAATAATTTTAAACATAATGAAAAA-TAAAAA
* *
7755506 CAA-TCATAAAAAAATATTA-T-TGCAGTGTCAATAATTAAGTTGACAATGTAAAAAGATTATTA
260 CAAGT-ATAAAAAAATATTATTATG-A-TGTAAATAATTAAATTGACAATGT-AAAA-ATTATTA
** * * ** * *
7755568 TTATAAAT-AAAAATAATTCTGAACACAAAAAGAA-TGTTAAAGTTAAAAATTGAA-AATAGTCA
320 TTATAAATAAAAAATAATTCCAAACAAAAAAAAAAGTGTT-AACCTAAAAAGT-AAGAATAATCA
*
7755630 TAAAA-TTAGTATCATTTGATGTAAAATAAGTTAGAACTATTATAATACCA
383 TAAAATTTA-TATAATTTGATGTAAAATAAGTTAGAACTATTATAATACCA
* * *
7755680 TAAGAAAGAGTTGTGATGATTTTAAATGT-ATAAAATGTAAGAACAAA-CATAAAAAA-AAAATT
1 TAAGAAAGAATTGTGATAATTTTAAATATAATAAAATGTAAGAA-AAAGCATAAAAAATAAAATT
* * * *
7755742 CTCACGTAAATAATTAAGTTGGAAACATAAAAGAATTATTATTATAAATAAAAAATAATTC-AAT
65 CTAACGTAAATAAATAACTTGGAAACATAAAAGAATTATTATTATAAATAAAAAATAATTCTAAA
* * * ** *
7755806 CAAAAAATAAGTGTTTATGAAAAAAAATTAGAATAATCGTAAAATTTTTATCATTTGGCATAAAA
130 CAAAAAATAAATGTTTATG-AAAAAAATGAGAATAATCATAAAATTAGTAT-ATTTGACATAAAA
* * * *
7755871 GTATATTA-AAAGTGTT-TTACA-CCT-TAAAAAAGTCATAATAATTTTAAACATAATGAAATAT
193 -T-GATTAGAAA-TGTTGTAACACCCTAAAAAAAAGTCATAATAATTTTAAACATAATGAAAAAT
* * * * *
7755932 AAAAACAAGTGTAAAGATATATTATTATGATGTAAATAATTAAATTGATAATGTAAAATTTATTA
255 AAAAACAAGTATAAAAAAATATTATTATGATGTAAATAATTAAATTGACAATGTAAAAATTATTA
7755997 TTATAAATAAAAAATAATTCCAAACAAAAAAAAAAGTGTTAACCTAAAAAGTAAGAATAATCATA
320 TTATAAATAAAAAATAATTCCAAACAAAAAAAAAAGTGTTAACCTAAAAAGTAAGAATAATCATA
*
7756062 AAATTTATATAATTTTATGTAAAAT
385 AAATTTATATAATTTGATGTAAAAT
7756087 GGGCTATTGC
Statistics
Matches: 337, Mismatches: 56, Indels: 31
0.79 0.13 0.07
Matches are distributed among these distances:
429 16 0.05
430 83 0.25
431 152 0.45
432 39 0.12
433 39 0.12
434 8 0.02
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.32
Consensus pattern (432 bp):
TAAGAAAGAATTGTGATAATTTTAAATATAATAAAATGTAAGAAAAAGCATAAAAAATAAAATTC
TAACGTAAATAAATAACTTGGAAACATAAAAGAATTATTATTATAAATAAAAAATAATTCTAAAC
AAAAAATAAATGTTTATGAAAAAAATGAGAATAATCATAAAATTAGTATATTTGACATAAAATGA
TTAGAAATGTTGTAACACCCTAAAAAAAAGTCATAATAATTTTAAACATAATGAAAAATAAAAAC
AAGTATAAAAAAATATTATTATGATGTAAATAATTAAATTGACAATGTAAAAATTATTATTATAA
ATAAAAAATAATTCCAAACAAAAAAAAAAGTGTTAACCTAAAAAGTAAGAATAATCATAAAATTT
ATATAATTTGATGTAAAATAAGTTAGAACTATTATAATACCA
Found at i:7758659 original size:22 final size:22
Alignment explanation
Indices: 7758631--7758674 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7758621 CTAAATCTTT
* *
7758631 CTTAATTCTAGGGATATAAATA
1 CTTAATTCTAGAGATACAAATA
7758653 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7758675 TAAATATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:7762377 original size:23 final size:23
Alignment explanation
Indices: 7762318--7762402 Score: 116
Period size: 23 Copynumber: 3.6 Consensus size: 23
7762308 TTGAAAAGGT
* *
7762318 TCGGCAATGAAGGCCTAAACAGGAT
1 TCGGCAATGAAGGCCTAAA-A-AAG
*
7762343 TCGACAATGAAGGCCTAAAAAAG
1 TCGGCAATGAAGGCCTAAAAAAG
7762366 TCGGCAATGAAGGCCTAAAAAAG
1 TCGGCAATGAAGGCCTAAAAAAG
*
7762389 TCAGCAATGAAGGC
1 TCGGCAATGAAGGC
7762403 TGAAAATTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
23 36 0.65
24 1 0.02
25 18 0.33
ACGTcount: A:0.41, C:0.19, G:0.26, T:0.14
Consensus pattern (23 bp):
TCGGCAATGAAGGCCTAAAAAAG
Found at i:7762575 original size:22 final size:22
Alignment explanation
Indices: 7762550--7762593 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7762540 CTAAATCTTC
*
7762550 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7762572 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7762594 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:7762911 original size:28 final size:28
Alignment explanation
Indices: 7762840--7762912 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 28
7762830 TTTTGTGTAT
* **
7762840 ACACACACACACACAAATATATGTTTGC
1 ACACACACACACACACATATATGTGCGC
* * * *
7762868 ACACATATATATACACATATATGTGCGC
1 ACACACACACACACACATATATGTGCGC
*
7762896 CCACACACACACACACA
1 ACACACACACACACACA
7762913 CACACATATA
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.42, C:0.32, G:0.07, T:0.19
Consensus pattern (28 bp):
ACACACACACACACACATATATGTGCGC
Found at i:7764860 original size:3 final size:3
Alignment explanation
Indices: 7764854--7764886 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
7764844 TTTTTTCAAC
7764854 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7764887 TGCTTATACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7768838 original size:3 final size:3
Alignment explanation
Indices: 7768818--7768903 Score: 52
Period size: 3 Copynumber: 29.3 Consensus size: 3
7768808 TTATATTGTA
* * * * *
7768818 TAT TGT TAT TAC TAT TAT TAT TAT TAT TA- TAT T-G TACA TAG T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* * * * *
7768861 TAT TAG TAT TAT TAT TGT TAT CAG AAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7768904 TATTTTTCTT
Statistics
Matches: 62, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
2 4 0.06
3 56 0.90
4 2 0.03
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7769276 original size:20 final size:20
Alignment explanation
Indices: 7769240--7769277 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7769230 TTTTAGAATT
*
7769240 GATTTAAGGTTTCTGGGTGA
1 GATTTAAGATTTCTGGGTGA
7769260 GATTTAAAGATTT-TGGGT
1 GATTT-AAGATTTCTGGGT
7769278 TTAATTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.24, C:0.03, G:0.32, T:0.42
Consensus pattern (20 bp):
GATTTAAGATTTCTGGGTGA
Found at i:7769729 original size:22 final size:19
Alignment explanation
Indices: 7769686--7769733 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 19
7769676 TCTTTTTTCA
7769686 TTTATTTTTATTTTTTGAT
1 TTTATTTTTATTTTTTGAT
*
7769705 TTTATTTTTAATTCATTTTGTT
1 TTTATTTTT-ATT--TTTTGAT
7769727 TTTATTT
1 TTTATTT
7769734 GTTTTTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 9 0.36
20 3 0.12
22 13 0.52
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (19 bp):
TTTATTTTTATTTTTTGAT
Found at i:7769745 original size:35 final size:33
Alignment explanation
Indices: 7769682--7769748 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 33
7769672 AGTTTCTTTT
7769682 TTCATTTATTTTTATTTTTTGATTTTATTTTTAA
1 TTCATTTATTTTTATTTTTT-ATTTTATTTTTAA
*
7769716 TTCATTTTGTTTTTATTTGTTT-TTATTATTTTT
1 TTCA-TTTATTTTTATTT-TTTATT-TTATTTTT
7769749 CAGTTTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 6 0.21
35 20 0.69
36 3 0.10
ACGTcount: A:0.16, C:0.03, G:0.04, T:0.76
Consensus pattern (33 bp):
TTCATTTATTTTTATTTTTTATTTTATTTTTAA
Found at i:7769761 original size:32 final size:31
Alignment explanation
Indices: 7769678--7769761 Score: 75
Period size: 32 Copynumber: 2.6 Consensus size: 31
7769668 GCAAAGTTTC
7769678 TTTT-TTCA-TTTATTTTTATTTTTTGATTTTAT
1 TTTTATTCATTTTATTTTTA---TTTGATTTTAT
* *
7769710 TTTTAATTCATTTTGTTTTTATTTGTTTTTAT
1 TTTT-ATTCATTTTATTTTTATTTGATTTTAT
7769742 TATTT-TTCAGTTTTATTTTT
1 T-TTTATTCA-TTTTATTTTT
7769762 GAGAAATTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
31 4 0.09
32 24 0.55
33 3 0.07
34 4 0.09
35 9 0.20
ACGTcount: A:0.15, C:0.04, G:0.05, T:0.76
Consensus pattern (31 bp):
TTTTATTCATTTTATTTTTATTTGATTTTAT
Found at i:7769921 original size:24 final size:26
Alignment explanation
Indices: 7769890--7769941 Score: 81
Period size: 24 Copynumber: 2.1 Consensus size: 26
7769880 TAAAAAATGT
7769890 ATAAAAAAAATC-CTTTC-AATAAAA
1 ATAAAAAAAATCTCTTTCAAATAAAA
*
7769914 ATAAAAAAAATCTTTTTCAAATAAAA
1 ATAAAAAAAATCTCTTTCAAATAAAA
7769940 AT
1 AT
7769942 CCTTACAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 12 0.48
25 4 0.16
26 9 0.36
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.29
Consensus pattern (26 bp):
ATAAAAAAAATCTCTTTCAAATAAAA
Found at i:7770076 original size:9 final size:8
Alignment explanation
Indices: 7770057--7770081 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7770047 TTTTTTTTTC
7770057 AAAAAATA
1 AAAAAATA
7770065 AAAAAATA
1 AAAAAATA
7770073 AAAAAATA
1 AAAAAATA
7770081 A
1 A
7770082 TTTTTATCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAATA
Found at i:7770696 original size:20 final size:20
Alignment explanation
Indices: 7770644--7770702 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
7770634 ATTTTATTCT
* *
7770644 TTTTCATTGCT-TTATTTGC
1 TTTTCATTGTTCTTATTTCC
*
7770663 TTTATTATTTGTTCTTATTTCC
1 TTT-TCA-TTGTTCTTATTTCC
*
7770685 TTTTCATTGTTCATATTT
1 TTTTCATTGTTCTTATTT
7770703 GCTTAATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 3 0.09
20 13 0.41
21 6 0.19
22 10 0.31
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (20 bp):
TTTTCATTGTTCTTATTTCC
Found at i:7773748 original size:77 final size:77
Alignment explanation
Indices: 7773597--7773761 Score: 183
Period size: 77 Copynumber: 2.1 Consensus size: 77
7773587 AGTTTCATTG
* * * * *
7773597 GCAAATAAAAATGAAAAAAGAAAATAAAGGAAAATTGATGGGGCAAAATACCAATATGCTCTACC
1 GCAAA-AAAAATCAAAAAAGAAAAAAAAAGAAAATTGATGGGCCAAAATACCAATATGCTCCACC
7773662 AACACAAAAAAAA
65 AACACAAAAAAAA
* * *
7773675 TGCAAAAAAAATCAAAAAAGAAAAAAAAAG-AAATTGATGGGCCAAAGA-GCCAATGTGTTCCAC
1 -GCAAAAAAAATCAAAAAAGAAAAAAAAAGAAAATTGATGGGCCAAA-ATACCAATATGCTCCA-
*
7773738 CCAA-AGAAAAAAAA
63 CCAACACAAAAAAAA
*
7773752 GAAAAAAAAA
1 GCAAAAAAAA
7773762 ACTGATGAGG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
76 9 0.12
77 34 0.46
78 26 0.35
79 5 0.07
ACGTcount: A:0.61, C:0.13, G:0.15, T:0.12
Consensus pattern (77 bp):
GCAAAAAAAATCAAAAAAGAAAAAAAAAGAAAATTGATGGGCCAAAATACCAATATGCTCCACCA
ACACAAAAAAAA
Found at i:7774085 original size:47 final size:48
Alignment explanation
Indices: 7774025--7774116 Score: 123
Period size: 47 Copynumber: 1.9 Consensus size: 48
7774015 AAGAGAAATG
* ** * *
7774025 AAAAATGAGAAAAAATGTGCAAAAAAAA-AAAGAAGAAGAAAAAATAA
1 AAAAATGACAAAAAAAATGCAAAAAAAAGAAAAAAGAAAAAAAAATAA
*
7774072 AAAAATTACAAAAAAAATGCAAAAAAAAGAAAAAAGAAAAAAAAA
1 AAAAATGACAAAAAAAATGCAAAAAAAAGAAAAAAGAAAAAAAAA
7774117 AGAGAAAAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
47 24 0.63
48 14 0.37
ACGTcount: A:0.78, C:0.03, G:0.11, T:0.08
Consensus pattern (48 bp):
AAAAATGACAAAAAAAATGCAAAAAAAAGAAAAAAGAAAAAAAAATAA
Found at i:7774111 original size:13 final size:14
Alignment explanation
Indices: 7774095--7774126 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
7774085 AAAATGCAAA
7774095 AAAAAGAAAAA-AG
1 AAAAAGAAAAAGAG
7774108 AAAAA-AAAAAGAG
1 AAAAAGAAAAAGAG
7774121 AAAAAG
1 AAAAAG
7774127 GGAGACTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAGAG
Found at i:7775679 original size:32 final size:32
Alignment explanation
Indices: 7775591--7775685 Score: 81
Period size: 32 Copynumber: 3.0 Consensus size: 32
7775581 TTATGGCTAG
*
7775591 TGGTTTCAT-CTCGA-CATTTATTTTTGA-TC-
1 TGGTTTCATCCT-GATCATTCATTTTTGACTCA
* * * *
7775620 TCGATTCAATCCTGGTCACTTCTTTTTTGACTCA
1 TGGTTTC-ATCCTGATCA-TTCATTTTTGACTCA
*
7775654 TGGTTTCATCCTGATCATTCATTTTTGGCTCA
1 TGGTTTCATCCTGATCATTCATTTTTGACTCA
7775686 ATCTAGATTA
Statistics
Matches: 50, Mismatches: 10, Indels: 9
0.72 0.14 0.13
Matches are distributed among these distances:
29 5 0.10
30 3 0.06
31 4 0.08
32 22 0.44
33 11 0.22
34 5 0.10
ACGTcount: A:0.17, C:0.22, G:0.14, T:0.47
Consensus pattern (32 bp):
TGGTTTCATCCTGATCATTCATTTTTGACTCA
Found at i:7776002 original size:13 final size:13
Alignment explanation
Indices: 7775986--7776028 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
7775976 AGGGTTATTT
7775986 TTATTTTAGTATA
1 TTATTTTAGTATA
*
7775999 TTATATTAGTATA
1 TTATTTTAGTATA
* * *
7776012 TTAATATAATATA
1 TTATTTTAGTATA
7776025 TTAT
1 TTAT
7776029 AAGGCAATAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (13 bp):
TTATTTTAGTATA
Found at i:7776051 original size:13 final size:12
Alignment explanation
Indices: 7776036--7776091 Score: 53
Period size: 12 Copynumber: 4.5 Consensus size: 12
7776026 TATAAGGCAA
*
7776036 TATATTATA-GT
1 TATATTATATAT
7776047 TATATTATATAT
1 TATATTATATAT
7776059 TATTATTAT-TAT
1 TA-TATTATATAT
7776071 TATTATTATTATTAT
1 TA-TATTA-TA-TAT
7776086 TATATT
1 TATATT
7776092 GTACATAGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
11 9 0.23
12 14 0.36
13 7 0.18
14 4 0.10
15 5 0.13
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (12 bp):
TATATTATATAT
Found at i:7776064 original size:3 final size:3
Alignment explanation
Indices: 7776049--7776179 Score: 99
Period size: 3 Copynumber: 44.3 Consensus size: 3
7776039 ATTATAGTTA
*
7776049 TAT TAT ATAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT T-G
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
7776093 TACA TAG T-T TAT TAG TAT TAT TAT TGT TAT CAG AAT TAT TAT TAT
1 TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
7776138 TAT TAC TAC TAC TAC TAT TAT TAC TAT TAT TAT T-T TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7776180 TTTCTTTCCT
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
2 6 0.06
3 94 0.90
4 5 0.05
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7776539 original size:20 final size:20
Alignment explanation
Indices: 7776514--7776551 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7776504 TTGTAGAATC
* *
7776514 AATTTGAGGTTTCTAGGTGA
1 AATTTGAAGATTCTAGGTGA
7776534 AATTTGAAGATTCTAGGT
1 AATTTGAAGATTCTAGGT
7776552 CTAAGTTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.39
Consensus pattern (20 bp):
AATTTGAAGATTCTAGGTGA
Found at i:7776705 original size:31 final size:31
Alignment explanation
Indices: 7776668--7776753 Score: 100
Period size: 31 Copynumber: 2.7 Consensus size: 31
7776658 TTTGAATGTT
* *
7776668 TAAATTTTTTGATGAATTTTTCGATGGGATA
1 TAAATTTTTTGATGAATTTTTCAATGGAATA
* * * *
7776699 TGAATTTTCTGATGAGTTTTTTAATGGAATA
1 TAAATTTTTTGATGAATTTTTCAATGGAATA
*
7776730 TAAATTTTTTGATAGGATTTTTCA
1 TAAATTTTTTGAT-GAATTTTTCA
7776754 GAAACGAACA
Statistics
Matches: 43, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
31 36 0.84
32 7 0.16
ACGTcount: A:0.29, C:0.03, G:0.17, T:0.50
Consensus pattern (31 bp):
TAAATTTTTTGATGAATTTTTCAATGGAATA
Found at i:7777216 original size:23 final size:26
Alignment explanation
Indices: 7777188--7777236 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
7777178 AAAAATGTAT
7777188 AAAAAAATC-CTTTC-AATAAAAATA
1 AAAAAAATCTCTTTCAAATAAAAATA
*
7777212 AAAAAAATCTTTTTCAAATAAAAAT
1 AAAAAAATCTCTTTCAAATAAAAAT
7777237 TCTTACAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.41
25 4 0.18
26 9 0.41
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (26 bp):
AAAAAAATCTCTTTCAAATAAAAATA
Found at i:7779631 original size:12 final size:12
Alignment explanation
Indices: 7779611--7779644 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7779601 TCTATTGTTT
*
7779611 TAATTTTAATAA
1 TAATATTAATAA
7779623 TAATATTAATAA
1 TAATATTAATAA
*
7779635 TAATAATAAT
1 TAATATTAAT
7779645 TTAAAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATATTAATAA
Found at i:7780040 original size:13 final size:13
Alignment explanation
Indices: 7780011--7780050 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
7780001 CAAAATACCT
7780011 AAAACAGAAACACA
1 AAAACAGAAACA-A
7780025 AAAACAGAAACAA
1 AAAACAGAAACAA
* *
7780038 AAACCAAAAACAA
1 AAAACAGAAACAA
7780051 CACAGTTCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.75, C:0.20, G:0.05, T:0.00
Consensus pattern (13 bp):
AAAACAGAAACAA
Found at i:7780041 original size:12 final size:14
Alignment explanation
Indices: 7780011--7780040 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7780001 CAAAATACCT
7780011 AAAACAGAAACACA
1 AAAACAGAAACACA
7780025 AAAACAGAAACA-A
1 AAAACAGAAACACA
7780038 AAA
1 AAA
7780041 CCAAAAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.77, C:0.17, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAACAGAAACACA
Found at i:7780041 original size:20 final size:19
Alignment explanation
Indices: 7780012--7780049 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7780002 AAAATACCTA
*
7780012 AAACAGAAACACAAAAACAG
1 AAACAAAAAC-CAAAAACAG
7780032 AAACAAAAACCAAAAACA
1 AAACAAAAACCAAAAACA
7780050 ACACAGTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.74, C:0.21, G:0.05, T:0.00
Consensus pattern (19 bp):
AAACAAAAACCAAAAACAG
Found at i:7781179 original size:16 final size:16
Alignment explanation
Indices: 7781138--7781224 Score: 77
Period size: 16 Copynumber: 5.2 Consensus size: 16
7781128 CTAAGTTTTT
7781138 AAAACCCCTAAAAATCC
1 AAAACCCCT-AAAATCC
* *
7781155 AAAATCCCTTAAATCC
1 AAAACCCCTAAAATCC
*
7781171 AAACCCCCTAAAAT-C
1 AAAACCCCTAAAATCC
**
7781186 AGAAACCTTTAAAATCC
1 A-AAACCCCTAAAATCC
*
7781203 AAAACCCCCCCAAAATCC
1 AAAA--CCCCTAAAATCC
7781221 AAAA
1 AAAA
7781225 TCCCAAACTT
Statistics
Matches: 55, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
15 2 0.04
16 30 0.55
17 10 0.18
18 13 0.24
ACGTcount: A:0.49, C:0.34, G:0.01, T:0.15
Consensus pattern (16 bp):
AAAACCCCTAAAATCC
Found at i:7781184 original size:32 final size:35
Alignment explanation
Indices: 7781142--7781228 Score: 103
Period size: 32 Copynumber: 2.6 Consensus size: 35
7781132 GTTTTTAAAA
7781142 CCCCTAAAAATCCAAAATCCCTT-AAATCC-AAA-C
1 CCCCT-AAAATCCAAAATCCCTTAAAATCCAAAACC
*
7781175 CCCCTAAAAT-CAGAAA-CCTTTAAAATCCAAAACC
1 CCCCTAAAATCCA-AAATCCCTTAAAATCCAAAACC
*
7781209 CCCCCAAAATCCAAAATCCC
1 CCCCTAAAATCCAAAATCCC
7781229 AAACTTTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
31 6 0.13
32 14 0.31
33 8 0.18
34 13 0.29
35 4 0.09
ACGTcount: A:0.45, C:0.38, G:0.01, T:0.16
Consensus pattern (35 bp):
CCCCTAAAATCCAAAATCCCTTAAAATCCAAAACC
Found at i:7781285 original size:45 final size:45
Alignment explanation
Indices: 7781209--7781294 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
7781199 ATCCAAAACC
* * *
7781209 CCCCCAAAATCCAAAATCCCAAACTTTTAAACTCTTAAATCTAAT
1 CCCCCAAAATCCAAAATCCCAAACATCTAAACCCTTAAATCTAAT
*
7781254 CCCCCTAAATCCAAAATCCCTAAA-ATCTAAACCCTTAAATC
1 CCCCCAAAATCCAAAATCCC-AAACATCTAAACCCTTAAATC
7781295 AAAACTCCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
45 33 0.92
46 3 0.08
ACGTcount: A:0.42, C:0.34, G:0.00, T:0.24
Consensus pattern (45 bp):
CCCCCAAAATCCAAAATCCCAAACATCTAAACCCTTAAATCTAAT
Found at i:7781318 original size:14 final size:15
Alignment explanation
Indices: 7781293--7781336 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 15
7781283 AACCCTTAAA
7781293 TCAAAACTCCAAACC
1 TCAAAACTCCAAACC
7781308 TCAAAAC-CCAAACC
1 TCAAAACTCCAAACC
7781322 -CTAAAATCTCCAAAC
1 TC-AAAA-CTCCAAAC
7781337 TTTAAAATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 1 0.04
14 11 0.42
15 8 0.31
16 6 0.23
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.14
Consensus pattern (15 bp):
TCAAAACTCCAAACC
Found at i:7781335 original size:30 final size:29
Alignment explanation
Indices: 7781295--7781356 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
7781285 CCCTTAAATC
*
7781295 AAAACTCCAAACCTCAAAACCCAAACCCT
1 AAAACTCCAAACCTCAAAACCAAAACCCT
* * *
7781324 AAAATCTCCAAACTTTAAAATCAAAACCCT
1 AAAA-CTCCAAACCTCAAAACCAAAACCCT
7781354 AAA
1 AAA
7781357 CCTTCCATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (29 bp):
AAAACTCCAAACCTCAAAACCAAAACCCT
Found at i:7782510 original size:21 final size:21
Alignment explanation
Indices: 7782485--7782530 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7782475 CAATGGTTGG
*
7782485 ATTTAATTGATTTTATTTTAT
1 ATTTAATTGAATTTATTTTAT
* *
7782506 ATTTAATTTAATTTCTTTTAT
1 ATTTAATTGAATTTATTTTAT
7782527 -TTTA
1 ATTTA
7782531 TTTTTTTGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTTAATTGAATTTATTTTAT
Found at i:7788140 original size:33 final size:33
Alignment explanation
Indices: 7788046--7788678 Score: 575
Period size: 33 Copynumber: 19.5 Consensus size: 33
7788036 AAAAAAAAAC
* * *
7788046 TTTAAGCCCAGTTTATCTGACCATTAATGAAGC
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
7788079 TTTAAG-CCAGTTTATCTGGCC-TCAAATGAAGA
1 TTTAAGCCCAGTTTATCTGGCCATC-AATGAAGA
* * *
7788111 TTTAAGCCTAGTTTATCTAGCCATCAATG-ACA
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
*
7788143 TTTAAGCCCAGTTTATCT-GCCAT-AAT-AAGT
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
* *
7788173 TTTAA-CCCAGTTTATCTGGCCATTAATGAAGC
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
* * *
7788205 TTTAAGCCCAGTTTATCTGGCCTTAAATAAAGA
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
* * * **
7788238 TTTAAACCCAGTTTATCTGGCCATTAATAAATC
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
*
7788271 TTTAAG-CCAGTTTATCTGGTC-TCAAATGAAGA
1 TTTAAGCCCAGTTTATCTGGCCATC-AATGAAGA
* * *
7788303 TTTAAGCTCAGTTTATCTGGCCATTAATGAAGC
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
* *
7788336 TTTAAGCCCAATTTATCTGGCCAAT-AATGAAGC
1 TTTAAGCCCAGTTTATCTGGCC-ATCAATGAAGA
* * *
7788369 TTTAAGCTCAGTTTATTTGGCC-TCAAATGAAGT
1 TTTAAGCCCAGTTTATCTGGCCATC-AATGAAGA
* *
7788402 TTTAAGCTCAGTTTATCTGGCCATCAATG-ACA
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
* *
7788434 TTTAAGCCCAGTTTATCTAGCCATCAAT-AAGTT
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAG-A
* *
7788467 TTTAAAACCCAGTTTATTTGGCC-TCAAATGAAGA
1 TTT-AAGCCCAGTTTATCTGGCCATC-AATGAAGA
* * *
7788501 TCTAAGCCCAGTTTATCTGGCTATCAATG-ATA
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
* *
7788533 TTTAAGCCCAGTTTATCTGGCC-TCAAATGAGGT
1 TTTAAGCCCAGTTTATCTGGCCATC-AATGAAGA
* * * ** * *
7788566 TTTAAGCCTAATTTAGCTAACCTTCAAT-AAAA
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
* * * *
7788598 TTTAAGCCTAGTTTATCTGGCC-TAAAATGAGGT
1 TTTAAGCCCAGTTTATCTGGCCAT-CAATGAAGA
* * * *
7788631 TTTAAGCCCAATTTAACTGGCCTTCAAT-AAAA
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
*
7788663 TTTAAGTCCAGTTTAT
1 TTTAAGCCCAGTTTAT
7788679 TTGGTCTCAA
Statistics
Matches: 491, Mismatches: 82, Indels: 55
0.78 0.13 0.09
Matches are distributed among these distances:
29 12 0.02
30 14 0.03
31 14 0.03
32 169 0.34
33 246 0.50
34 33 0.07
35 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (33 bp):
TTTAAGCCCAGTTTATCTGGCCATCAATGAAGA
Found at i:7788154 original size:65 final size:65
Alignment explanation
Indices: 7788046--7788699 Score: 616
Period size: 65 Copynumber: 10.1 Consensus size: 65
7788036 AAAAAAAAAC
* *
7788046 TTTAAGCCCAGTTTATCTGACCATTAATGAAGCTTTAAG-CCAGTTTATCTGGCCTCAAATGAAG
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAA-CTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
7788110 A
65 A
* *
7788111 TTTAAGCCTAGTTTATCTAGCCATCAATG-ACATTTAAGCCCAGTTTATCT-G-C-CATAAT-AA
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAC-TTTAAGCCCAGTTTATCTGGCCTCA-AATGAA
*
7788171 GT
64 GA
* * *
7788173 TTTAA-CCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCTTAAATAAAG
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAA-CTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
7788237 A
65 A
* * * *
7788238 TTTAAACCCAGTTTATCTGGCCATTAATAAATCTTTAAG-CCAGTTTATCTGGTCTCAAATGAAG
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAA-CTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
7788302 A
65 A
* * * *
7788303 TTTAAGCTCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAATTTATCTGGCC-AATAATGAA
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAA-CTTTAAGCCCAGTTTATCTGGCCTCA-AATGAA
*
7788367 GC
64 GA
* * * *
7788369 TTTAAGCTCAGTTTATTTGGCC-TCAAATGAAGTTTTAAGCTCAGTTTATCTGGCCATC-AATG-
1 TTTAAGCCCAGTTTATCTGGCCATC-AATGAA-CTTTAAGCCCAGTTTATCTGGCC-TCAAATGA
*
7788431 ACA
63 AGA
* * * *
7788434 TTTAAGCCCAGTTTATCTAGCCATCAAT-AAGTTTTTAAAACCCAGTTTATTTGGCCTCAAATGA
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAA--CTTT-AAGCCCAGTTTATCTGGCCTCAAATGA
7788498 AGA
63 AGA
* * *
7788501 TCTAAGCCCAGTTTATCTGGCTATCAATGATA-TTTAAGCCCAGTTTATCTGGCCTCAAATGAGG
1 TTTAAGCCCAGTTTATCTGGCCATCAATGA-ACTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
*
7788565 T
65 A
* * * ** * * * * * * *
7788566 TTTAAGCCTAATTTAGCTAACCTTCAATAAAATTTAAGCCTAGTTTATCTGGCCTAAAATGAGGT
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAACTTTAAGCCCAGTTTATCTGGCCTCAAATGAAGA
* * * * * * * * * *
7788631 TTTAAGCCCAATTTAACTGGCCTTCAATAAAATTTAAGTCCAGTTTATTTGGTCTCAAAAGAAGT
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAACTTTAAGCCCAGTTTATCTGGCCTCAAATGAAGA
7788696 TTTA
1 TTTA
7788700 GAGTTTCAAA
Statistics
Matches: 498, Mismatches: 68, Indels: 46
0.81 0.11 0.08
Matches are distributed among these distances:
61 20 0.04
62 29 0.06
63 7 0.01
64 15 0.03
65 270 0.54
66 128 0.26
67 27 0.05
68 1 0.00
69 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (65 bp):
TTTAAGCCCAGTTTATCTGGCCATCAATGAACTTTAAGCCCAGTTTATCTGGCCTCAAATGAAGA
Found at i:7788416 original size:164 final size:162
Alignment explanation
Indices: 7788045--7788678 Score: 607
Period size: 164 Copynumber: 3.9 Consensus size: 162
7788035 AAAAAAAAAA
* * * *
7788045 CTTTAAGCCCAGTTTATCTGACCAT-TAATGAAGCTTTAAGCCAGTTTATCTGGCCTCAAATGAA
1 CTTTAAGCCCAGTTTATCTGGCC-TCAAATGAAGTTTTAAGCCAGTTTATCTGGCCT-TAAT-AA
* *
7788109 GATTTAAGCCTAGTTTATCTAGCCATCAATG-ACATTTAAGCCCAGTTTATCT-GCCA-TAAT-A
63 AATTTAAGCCTAGTTTATCTAGCCATCAATGAAGATTTAAGCCCAGTTTATCTGGCCATTAATGA
* *
7788170 AGTTTTAA-CCCAGTTTATCTGGCCATTAATGAAG
128 AGATTTAAGCCCAGTTTATCTGGCCAATAATGAAG
* * * *
7788204 CTTTAAGCCCAGTTTATCTGGCCTTAAATAAAGATTTAAACCCAGTTTATCTGGCCATTAATAAA
1 CTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG-TTTTAAGCCAGTTTATCTGGCC-TTAATAAA
* * * *
7788269 TCTTTAAGCC-AGTTTATCTGGTC-TCAAATGAAGATTTAAGCTCAGTTTATCTGGCCATTAATG
64 -ATTTAAGCCTAGTTTATCTAGCCATC-AATGAAGATTTAAGCCCAGTTTATCTGGCCATTAATG
* *
7788332 AAGCTTTAAGCCCAATTTATCTGGCCAATAATGAAG
127 AAGATTTAAGCCCAGTTTATCTGGCCAATAATGAAG
* * * * *
7788368 CTTTAAGCTCAGTTTATTTGGCCTCAAATGAAGTTTTAAGCTCAGTTTATCTGGCCATCAATGAC
1 CTTTAAGCCCAGTTTATCTGGCCTCAAATGAAGTTTTAAGC-CAGTTTATCTGGCC-TTAATAAA
* * * * *
7788433 ATTTAAGCCCAGTTTATCTAGCCATCAAT-AAGTTTTTAAAACCCAGTTTATTTGGCC-TCAAAT
64 ATTTAAGCCTAGTTTATCTAGCCATCAATGAAG-ATTT-AAGCCCAGTTTATCTGGCCAT-TAAT
* *
7788496 GAAGATCTAAGCCCAGTTTATCTGG-CTATCAATGATA-
126 GAAGATTTAAGCCCAGTTTATCTGGCCAAT-AATGA-AG
* * * **
7788533 -TTTAAGCCCAGTTTATCTGGCCTCAAATGAGGTTTTAAGCCTAATTTAGCTAACCTTCAATAAA
1 CTTTAAGCCCAGTTTATCTGGCCTCAAATGAAGTTTTAAGCC-AGTTTATCTGGCCTT-AATAAA
* * * * * *
7788597 ATTTAAGCCTAGTTTATCTGGCC-TAAAATGAGGTTTTAAGCCCAATTTAACTGGCC-TTCAAT-
64 ATTTAAGCCTAGTTTATCTAGCCAT-CAATGAAGATTTAAGCCCAGTTTATCTGGCCATT-AATG
* *
7788659 AAAATTTAAGTCCAGTTTAT
127 AAGATTTAAGCCCAGTTTAT
7788679 TTGGTCTCAA
Statistics
Matches: 393, Mismatches: 59, Indels: 43
0.79 0.12 0.09
Matches are distributed among these distances:
158 3 0.01
159 45 0.11
160 49 0.12
161 5 0.01
162 21 0.05
163 47 0.12
164 172 0.44
165 50 0.13
166 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (162 bp):
CTTTAAGCCCAGTTTATCTGGCCTCAAATGAAGTTTTAAGCCAGTTTATCTGGCCTTAATAAAAT
TTAAGCCTAGTTTATCTAGCCATCAATGAAGATTTAAGCCCAGTTTATCTGGCCATTAATGAAGA
TTTAAGCCCAGTTTATCTGGCCAATAATGAAG
Found at i:7789521 original size:110 final size:109
Alignment explanation
Indices: 7789324--7789690 Score: 461
Period size: 110 Copynumber: 3.3 Consensus size: 109
7789314 AAGATTTTGA
* * * * * *
7789324 GATT-TGTAAGACCTCCAGGCATAATCTCTAAGACTTTCGGGCATAAATTCGATTCACGGTGTTA
1 GATTCTGTAAGACCTTCAGGCATGATTTCTAAGACCTTCAGGCATAAATTCGATTC-CAGTGTTA
* *
7789388 TCTCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAATC
65 TCTCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCTCAGTC
* * * *
7789433 GATTTTGTTAGATCTTCAGGCATGATTTCTAAGACCTTCAGGCATAATTTCGATTCGCAGTGTTA
1 GATTCTGTAAGACCTTCAGGCATGATTTCTAAGACCTTCAGGCATAAATTCGATTC-CAGTGTTA
*
7789498 TCTCGATCGATTCTTTATATTTTGACTTGTGGTGTTATCTCAGTC
65 TCTCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCTCAGTC
* * * *
7789543 GATTCTGTAAGACCTTCGGGCATGATTTTTAAGATCTTCAGGCATAAATTCGATT-CATGATATT
1 GATTCTGTAAGACCTTCAGGCATGATTTCTAAGACCTTCAGGCATAAATTCGATTCCA-G-TGTT
* *
7789607 ATCTTGATCGATTCTTTATCTTTTTACTTGTGGTGTTATCTCAGTC
64 ATCTCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCTCAGTC
* * *
7789653 GATTCTATAAGACC-TCCGTGCATGATTTTGTAAGACCT
1 GATTCTGTAAGACCTTCAG-GCATGA-TTTCTAAGACCT
7789691 CCGGGCATGA
Statistics
Matches: 225, Mismatches: 28, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
108 2 0.01
109 8 0.04
110 205 0.91
111 10 0.04
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.41
Consensus pattern (109 bp):
GATTCTGTAAGACCTTCAGGCATGATTTCTAAGACCTTCAGGCATAAATTCGATTCCAGTGTTAT
CTCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCTCAGTC
Found at i:7789703 original size:133 final size:133
Alignment explanation
Indices: 7789543--7789830 Score: 366
Period size: 133 Copynumber: 2.2 Consensus size: 133
7789533 TATCTCAGTC
* * * * *
7789543 GATTCTGTAAGACCTTCGGGCATGATTTTTAAGATCTTCAG-GCATAAATTCGATTCATGATATT
1 GATTTTGTAAGACCTCCGGGCATGATTTCTAAGA-CCTCAGAGCATAAATTCGATTCACGATATT
* * * * *
7789607 ATCTT-GATCGATTCTTTATCTTTTTACTTGTGGTGTTATCTCAGTCGATTCTATAAGACCTCCG
65 AT-TTCGATCGATTCTTTATCTTTTGACTTGTGGTATTATCCCAGTCAATTCTATAAGACCTCAG
*
7789671 TGCAT
129 GGCAT
* * * * *
7789676 GATTTTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGGTGTTA
1 GATTTTGTAAGACCTCCGGGCATGATTTCTAAGACCTCAGAGCATAAATTCGATTCACGATATTA
* *
7789741 TTTCGATCGATTCTTTATCTTTTGACTTGTGTTATTATCCCAGTCAATTCTGTAAGACCTCAGGG
66 TTTCGATCGATTCTTTATCTTTTGACTTGTGGTATTATCCCAGTCAATTCTATAAGACCTCAGGG
7789806 CAT
131 CAT
*
7789809 GATTTT-TAAGACCTCCAGGCAT
1 GATTTTGTAAGACCTCCGGGCAT
7789831 AAATTCGATT
Statistics
Matches: 134, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
132 21 0.16
133 113 0.84
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (133 bp):
GATTTTGTAAGACCTCCGGGCATGATTTCTAAGACCTCAGAGCATAAATTCGATTCACGATATTA
TTTCGATCGATTCTTTATCTTTTGACTTGTGGTATTATCCCAGTCAATTCTATAAGACCTCAGGG
CAT
Found at i:7789711 original size:22 final size:22
Alignment explanation
Indices: 7789660--7789726 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
7789650 GTCGATTCTA
* *
7789660 TAAGACCTCCGTGCATGATTTTG
1 TAAGACCTCCGAGCATGA-TTTC
*
7789683 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGAGCATGATTTC
*
7789705 TAAGACCTCCGAGCATAATTTC
1 TAAGACCTCCGAGCATGATTTC
7789727 GATTCGCGGT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
22 23 0.57
23 17 0.43
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (22 bp):
TAAGACCTCCGAGCATGATTTC
Done.