Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 35 of 131
Found at i:7789870 original size:243 final size:236
Alignment explanation
Indices: 7789433--7790133 Score: 762
Period size: 243 Copynumber: 3.0 Consensus size: 236
7789423 TATCCCAATC
* * *
7789433 GATTTTGTTAGATCTTCAGGCATGATTTCTAAGACCTTCAGGCATAATTTCGATTCGCAGTGTTA
1 GATTTTGTAAGA-CCTC-GGCATGATTTCTAAGACC-TCA-GCATAATTTCGATTCGCGGTGTTA
*
7789498 TCTCGATCGATTCTTTATATTTTGACTTGTGGTGTTATCTCAGTCGATTCTGTAAGACCTTCGGG
62 TCTCGATCGATTCTTTAT-TTTTGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGGG
* * *** * ** *
7789563 CATGATTTTTAAGATCTTCAGGCATAAATTCGATTCATGATATTATCTTGATCGATTCTTTATCT
126 CATGATTTTTAAGACCTCCAGGCATAAATTCGATTTGCGATGTTATCCCGATTGATTCTTTATCT
* *
7789628 TTTTACTTGTGGTGTTATCTCAGTCGATTCTATAAGACCTCCGTGCAT
191 TTTTACTTGTGGTGTTATC-CAATCGATTCTGTAAGACCTCCG-GCAT
7789676 GATTTTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGGTGTTA
1 GATTTTGTAAGACCT-C-GGCATGATTTCTAAGACCT-C-AGCATAATTTCGATTCGCGGTGTTA
* * * *
7789741 TTTCGATCGATTCTTTATCTTTTGACTTGTGTTATTATCCCAGTCAATTCTGTAAGACC-TCAGG
62 TCTCGATCGATTCTTTAT-TTTTGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTTC-GG
*
7789805 GCATGATTTTTAAGACCTCCAGGCATAAATTCGATTTGCGATGTTATCCCGATTGATTTTTTATC
125 GCATGATTTTTAAGACCTCCAGGCATAAATTCGATTTGCGATGTTATCCCGATTGATTCTTTATC
* *
7789870 TTTTGACTTGTGGTGTTATCCTAATCGATTCTGTAAGACCTCTAGGCAT
190 TTTTTACTTGTGGTGTTATCC-AATCGATTCTGTAAGACCTC-CGGCAT
* * * * *
7789919 GA-TTTCTAAGACGTC--CA-GA---C----A--T-A--AT--TTT-GATTCGCGATGTTGTCCC
1 GATTTTGTAAGACCTCGGCATGATTTCTAAGACCTCAGCATAATTTCGATTCGCGGTGTTATCTC
* *
7789965 GATCGATTTTTTATTTCTGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGGGCATGA
66 GATCGATTCTTTATTTTTGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGGGCATGA
* * *
7790030 TTTCTAAGACCTCC-GAGCATAATTTCGATTTGCGGTGTTATCCCGATTGATTCTTTAT-TTTTT
131 TTTTTAAGACCTCCAG-GCATAAATTCGATTTGCGATGTTATCCCGATTGATTCTTTATCTTTTT
*** *
7790093 AACTTAAAGTGTTATCCCAATCGATTCTGTAAGATCTCCGG
195 -ACTTGTGGTGTTAT-CCAATCGATTCTGTAAGACCTCCGG
7790134 GCATAAATTC
Statistics
Matches: 403, Mismatches: 45, Indels: 45
0.82 0.09 0.09
Matches are distributed among these distances:
218 7 0.02
219 126 0.31
220 31 0.08
221 3 0.01
223 2 0.00
225 1 0.00
228 1 0.00
230 1 0.00
234 1 0.00
237 2 0.00
238 2 0.00
241 1 0.00
242 16 0.04
243 207 0.51
244 2 0.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (236 bp):
GATTTTGTAAGACCTCGGCATGATTTCTAAGACCTCAGCATAATTTCGATTCGCGGTGTTATCTC
GATCGATTCTTTATTTTTGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGGGCATGA
TTTTTAAGACCTCCAGGCATAAATTCGATTTGCGATGTTATCCCGATTGATTCTTTATCTTTTTA
CTTGTGGTGTTATCCAATCGATTCTGTAAGACCTCCGGCAT
Found at i:7789874 original size:110 final size:110
Alignment explanation
Indices: 7789676--7790137 Score: 574
Period size: 110 Copynumber: 4.2 Consensus size: 110
7789666 CTCCGTGCAT
* * *
7789676 GATTTTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGGTGTTA
1 GATTCTGTAAGACCTCAGGGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGATGTTA
** * * *
7789741 TTTCGATCGATTCTTTATCTTTTGACTTGTGTTATTATCCCAGTC
66 TCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAATC
* * * *
7789786 AATTCTGTAAGACCTCAGGGCATGATTTTTAAGACCTCC-AGGCATAAATTCGATTTGCGATGTT
1 GATTCTGTAAGACCTCAGGGCATGATTTCTAAGACCTCCGA-GCATAATTTCGATTCGCGATGTT
* * *
7789850 ATCCCGATTGATTTTTTATCTTTTGACTTGTGGTGTTATCCTAATC
65 ATCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAATC
* *
7789896 GATTCTGTAAGACCTCTA-GGCATGATTTCTAAGACGTCC-AGACATAATTTTGATTCGCGATGT
1 GATTCTGTAAGACCTC-AGGGCATGATTTCTAAGACCTCCGAG-CATAATTTCGATTCGCGATGT
* * * *
7789959 TGTCCCGATCGATTTTTTAT-TTCTGACTTGTGGTGTTATCCCAGTC
64 TATCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAATC
* *
7790005 GATTCTGTAAGACCTTC-GGGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTTGCGGTGTT
1 GATTCTGTAAGACC-TCAGGGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGATGTT
* * * ***
7790069 ATCCCGATTGATTCTTTATTTTTTAACTTAAAGTGTTATCCCAATC
65 ATCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAATC
* *
7790115 GATTCTGTAAGATCTCCGGGCAT
1 GATTCTGTAAGACCTCAGGGCAT
7790138 AAATTCGATT
Statistics
Matches: 304, Mismatches: 40, Indels: 16
0.84 0.11 0.04
Matches are distributed among these distances:
109 96 0.32
110 207 0.68
111 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (110 bp):
GATTCTGTAAGACCTCAGGGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGATGTTA
TCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAATC
Found at i:7789972 original size:353 final size:351
Alignment explanation
Indices: 7789324--7790055 Score: 952
Period size: 353 Copynumber: 2.1 Consensus size: 351
7789314 AAGATTTTGA
* * * * *
7789324 GATTTGTAAGACCTCCAGGCATAATCTCTAAGACTTTCGGGCATAAATTCGATTCACGGTGTTAT
1 GATTTGTAAGACCTCCGGGCATAATTTCTAAGACCTCCGAGCATAAATTCGATTCACGGTGTTAT
* * * * *
7789389 CTCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAATCGATTTTGTTAGATCTTCAGGC
66 CTCGATCGATTCTTTATCTTTTGACTTGTGGTATTATCCCAATCAATTCTGTAAGATCCTCAGGC
* * *
7789454 ATGATTTCTAAGACCTTCAGGCATAATTTCGATTCGCAGTGTTATCTCGATCGATTCTTTATATT
131 ATGATTTCTAAGACCTCCAGGCATAAATTCGATTCGCAGTGTTATCCCGATCGATTCTTTATATT
* * * *
7789519 TTGACTTGTGGTGTTATCTCAGTCGATTCTGTAAGACCTTCGGGCATGATTTTTAAGATCTTCAG
196 TTGACTTGTGGTGTTATCTCAATCGATTCTGTAAGACCTTCAGGCATGATTTCTAAGATCTCCAG
* * ** * * *
7789584 GCATAAATTCGATTCATGATATTATCTTGATCGATTCTTTATCTTTTTACTTGTGGTGTTATCTC
261 ACATAAATTCGATTCACGATATTATCCCGATCGATTCTTTAT-TTCTGACTTGTGGTGTTATCCC
*
7789649 AGTCGATTCTATAAGACCTCCGTGCAT
325 AGTCGATTCTATAAGACCTCCGGGCAT
* * *
7789676 GATTTTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGGTGTTA
1 GA-TTTGTAAGACCTCCGGGCATAATTTCTAAGACCTCCGAGCATAAATTCGATTCACGGTGTTA
* * *
7789741 TTTCGATCGATTCTTTATCTTTTGACTTGTGTTATTATCCCAGTCAATTCTGTAAGA-CCTCAGG
65 TCTCGATCGATTCTTTATCTTTTGACTTGTGGTATTATCCCAATCAATTCTGTAAGATCCTCA-G
* * * *
7789805 GCATGATTTTTAAGACCTCCAGGCATAAATTCGATTTGC-GATGTTATCCCGATTGATTTTTTAT
129 GCATGATTTCTAAGACCTCCAGGCATAAATTCGATTCGCAG-TGTTATCCCGATCGATTCTTTAT
*
7789869 CTTTTGACTTGTGGTGTTATC-CTAATCGATTCTGTAAGACC-TCTAGGCATGATTTCTAAGA-C
193 ATTTTGACTTGTGGTGTTATCTC-AATCGATTCTGTAAGACCTTC-AGGCATGATTTCTAAGATC
* * * * * *
7789931 GTCCAGACATAATTTTGATTCGCGATGTTGTCCCGATCGATTTTTTATTTCTGACTTGTGGTGTT
256 -TCCAGACATAAATTCGATTCACGATATTATCCCGATCGATTCTTTATTTCTGACTTGTGGTGTT
* *
7789996 ATCCCAGTCGATTCTGTAAGACCTTCGGGCAT
320 ATCCCAGTCGATTCTATAAGACCTCCGGGCAT
* *
7790028 GATTTCTAAGACCTCCGAGCATAATTTC
1 GATTTGTAAGACCTCCGGGCATAATTTC
7790056 GATTTGCGGT
Statistics
Matches: 327, Mismatches: 47, Indels: 13
0.84 0.12 0.03
Matches are distributed among these distances:
351 23 0.07
352 56 0.17
353 248 0.76
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (351 bp):
GATTTGTAAGACCTCCGGGCATAATTTCTAAGACCTCCGAGCATAAATTCGATTCACGGTGTTAT
CTCGATCGATTCTTTATCTTTTGACTTGTGGTATTATCCCAATCAATTCTGTAAGATCCTCAGGC
ATGATTTCTAAGACCTCCAGGCATAAATTCGATTCGCAGTGTTATCCCGATCGATTCTTTATATT
TTGACTTGTGGTGTTATCTCAATCGATTCTGTAAGACCTTCAGGCATGATTTCTAAGATCTCCAG
ACATAAATTCGATTCACGATATTATCCCGATCGATTCTTTATTTCTGACTTGTGGTGTTATCCCA
GTCGATTCTATAAGACCTCCGGGCAT
Found at i:7790037 original size:22 final size:22
Alignment explanation
Indices: 7790012--7790055 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7790002 GTCGATTCTG
* * *
7790012 TAAGACCTTCGGGCATGATTTC
1 TAAGACCTCCGAGCATAATTTC
7790034 TAAGACCTCCGAGCATAATTTC
1 TAAGACCTCCGAGCATAATTTC
7790056 GATTTGCGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (22 bp):
TAAGACCTCCGAGCATAATTTC
Found at i:7790061 original size:219 final size:220
Alignment explanation
Indices: 7789676--7790137 Score: 635
Period size: 219 Copynumber: 2.1 Consensus size: 220
7789666 CTCCGTGCAT
* * *
7789676 GATTTTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGGTGTTA
1 GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGATGTTA
** * *
7789741 TTTCGATCGATTCTTTATCTTTTGACTTGTGTTATTATCCCAGTCAATTCTGTAAGACCTCAGGG
66 TCCCGATCGATTCTTTATCTTCTGACTTGTGGTATTATCCCAGTCAATTCTGTAAGACCTCAGGG
* *
7789806 CATGATTTTTAAGACCTCCAGGCATAAATTCGATTTGCGATGTTATCCCGATTGATTTTTTATCT
131 CATGATTTCTAAGACCTCCAGGCATAAATTCGATTTGCGATGTTATCCCGATTGATTCTTTATCT
* *** *
7789871 TTTGACTTGTGGTGTTATCCTAATC
196 TTTAACTTAAAGTGTTATCCCAATC
* * *
7789896 GATTCTGTAAGACCTCTAGGCATGATTTCTAAGACGTCC-AGACATAATTTTGATTCGCGATGTT
1 GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCGAG-CATAATTTCGATTCGCGATGTT
* * * *
7789960 GTCCCGATCGATTTTTTAT-TTCTGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTTC-G
65 ATCCCGATCGATTCTTTATCTTCTGACTTGTGGTATTATCCCAGTCAATTCTGTAAGACC-TCAG
* *
7790023 GGCATGATTTCTAAGACCTCC-GAGCATAATTTCGATTTGCGGTGTTATCCCGATTGATTCTTTA
129 GGCATGATTTCTAAGACCTCCAG-GCATAAATTCGATTTGCGATGTTATCCCGATTGATTCTTTA
*
7790087 TTTTTTAACTTAAAGTGTTATCCCAATC
193 TCTTTTAACTTAAAGTGTTATCCCAATC
* *
7790115 GATTCTGTAAGATCTCCGGGCAT
1 GATTCTGTAAGACCTCCAGGCAT
7790138 AAATTCGATT
Statistics
Matches: 212, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
218 1 0.00
219 139 0.66
220 72 0.34
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (220 bp):
GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGATGTTA
TCCCGATCGATTCTTTATCTTCTGACTTGTGGTATTATCCCAGTCAATTCTGTAAGACCTCAGGG
CATGATTTCTAAGACCTCCAGGCATAAATTCGATTTGCGATGTTATCCCGATTGATTCTTTATCT
TTTAACTTAAAGTGTTATCCCAATC
Found at i:7790186 original size:88 final size:88
Alignment explanation
Indices: 7790034--7790203 Score: 216
Period size: 88 Copynumber: 1.9 Consensus size: 88
7790024 GCATGATTTC
* ** * * *
7790034 TAAGACCTCCGAGCATAATTTCGATTTGCGGTGTTATCCCGATTGATTCTTTATTTTTTAACTTA
1 TAAGACCTCCGAGCATAAATTCGATTCACGATGTTATCCCGATTGATTCATTATTTTTCAACTTA
*
7790099 A-AGTGTTATCCCAATCGATTCTG
66 AGA-TGTCATCCCAATCGATTCTG
* * * *
7790122 TAAGATCTCCGGGCATAAATTCGATTCACGATGTTATCTCGATTGATTCATTATTTTTCGACTTA
1 TAAGACCTCCGAGCATAAATTCGATTCACGATGTTATCCCGATTGATTCATTATTTTTCAACTTA
*
7790187 CGATGTCATCCCAATCG
66 AGATGTCATCCCAATCG
7790204 TTTTGTGTTT
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
88 68 0.99
89 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.39
Consensus pattern (88 bp):
TAAGACCTCCGAGCATAAATTCGATTCACGATGTTATCCCGATTGATTCATTATTTTTCAACTTA
AGATGTCATCCCAATCGATTCTG
Found at i:7790374 original size:12 final size:12
Alignment explanation
Indices: 7790354--7790387 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7790344 TCTACTATTT
*
7790354 TAATTTTAATAA
1 TAATATTAATAA
7790366 TAATATTAATAA
1 TAATATTAATAA
*
7790378 TAATAATAAT
1 TAATATTAAT
7790388 TTAAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATATTAATAA
Found at i:7790436 original size:9 final size:8
Alignment explanation
Indices: 7790414--7790454 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
7790404 TATTAATTTT
7790414 ATAAAAAA
1 ATAAAAAA
*
7790422 ACAAAAAA
1 ATAAAAAA
7790430 ATAAAAAA
1 ATAAAAAA
*
7790438 ATAAAAGA
1 ATAAAAAA
*
7790446 ACAAAAAA
1 ATAAAAAA
7790454 A
1 A
7790455 GAGAAAAACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.85, C:0.05, G:0.02, T:0.07
Consensus pattern (8 bp):
ATAAAAAA
Found at i:7790461 original size:24 final size:24
Alignment explanation
Indices: 7790414--7790462 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
7790404 TATTAATTTT
*
7790414 ATAAAAAAACAAAAAAATAAAAAA
1 ATAAAAAAACAAAAAAAGAAAAAA
* *
7790438 ATAAAAGAACAAAAAAAGAGAAAA
1 ATAAAAAAACAAAAAAAGAAAAAA
7790462 A
1 A
7790463 CAGAAAGTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.84, C:0.04, G:0.06, T:0.06
Consensus pattern (24 bp):
ATAAAAAAACAAAAAAAGAAAAAA
Found at i:7790468 original size:8 final size:8
Alignment explanation
Indices: 7790416--7790464 Score: 53
Period size: 8 Copynumber: 6.1 Consensus size: 8
7790406 TTAATTTTAT
7790416 AAAAAAAC
1 AAAAAAAC
*
7790424 AAAAAAAT
1 AAAAAAAC
*
7790432 AAAAAAAT
1 AAAAAAAC
*
7790440 AAAAGAAC
1 AAAAAAAC
*
7790448 AAAAAAAG
1 AAAAAAAC
*
7790456 AGAAAAAC
1 AAAAAAAC
7790464 A
1 A
7790465 GAAAGTAGGG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.84, C:0.06, G:0.06, T:0.04
Consensus pattern (8 bp):
AAAAAAAC
Found at i:7791040 original size:22 final size:22
Alignment explanation
Indices: 7791012--7791060 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
7791002 CCATTTTATT
7791012 AATAAACAAAACAAAA-AAACAA
1 AATAAAC-AAACAAAAGAAACAA
*
7791034 AATAAACAAACAAAAGAAACAG
1 AATAAACAAACAAAAGAAACAA
7791056 AATAA
1 AATAA
7791061 GATAGAAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.78, C:0.12, G:0.04, T:0.06
Consensus pattern (22 bp):
AATAAACAAACAAAAGAAACAA
Found at i:7791053 original size:13 final size:13
Alignment explanation
Indices: 7791015--7791054 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
7791005 TTTTATTAAT
*
7791015 AAACAAAACAAAA
1 AAACAAAACAAAC
*
7791028 AAACAAAATAAAC
1 AAACAAAACAAAC
*
7791041 AAACAAAAGAAAC
1 AAACAAAACAAAC
7791054 A
1 A
7791055 GAATAAGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.80, C:0.15, G:0.03, T:0.03
Consensus pattern (13 bp):
AAACAAAACAAAC
Found at i:7791146 original size:24 final size:24
Alignment explanation
Indices: 7791101--7791147 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7791091 CTGTCGCCAA
*
7791101 CCCCCGACCAACTACCCTACCAGC
1 CCCCCGACCAACTACCCGACCAGC
*
7791125 CCCCCGACCAGCCT-CCCGACCAG
1 CCCCCGACCA-ACTACCCGACCAG
7791148 TCACCCTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.21, C:0.60, G:0.13, T:0.06
Consensus pattern (24 bp):
CCCCCGACCAACTACCCGACCAGC
Found at i:7791971 original size:14 final size:15
Alignment explanation
Indices: 7791947--7792004 Score: 66
Period size: 14 Copynumber: 3.9 Consensus size: 15
7791937 TCTGACTGAA
*
7791947 CCAGAACCGAATCGC
1 CCAGAACCGAACCGC
*
7791962 CCAG-ACCGAACCGAA
1 CCAGAACCGAACCG-C
*
7791977 CCGGAACCGAACCGC
1 CCAGAACCGAACCGC
7791992 CCAG-ACCGAACCG
1 CCAGAACCGAACCG
7792005 AACCGGTACT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
14 17 0.47
15 10 0.28
16 9 0.25
ACGTcount: A:0.33, C:0.43, G:0.22, T:0.02
Consensus pattern (15 bp):
CCAGAACCGAACCGC
Found at i:7791984 original size:30 final size:30
Alignment explanation
Indices: 7791944--7792039 Score: 138
Period size: 30 Copynumber: 3.2 Consensus size: 30
7791934 CGGTCTGACT
* *
7791944 GAACCAGAACCGAATCGCCCAGACCGAACC
1 GAACCGGAACCGAACCGCCCAGACCGAACC
7791974 GAACCGGAACCGAACCGCCCAGACCGAACC
1 GAACCGGAACCGAACCGCCCAGACCGAACC
* * * *
7792004 GAACCGGTACTGGACCGTCCAGACCGAACC
1 GAACCGGAACCGAACCGCCCAGACCGAACC
7792034 GAACCG
1 GAACCG
7792040 TCGAACCAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.32, C:0.40, G:0.24, T:0.04
Consensus pattern (30 bp):
GAACCGGAACCGAACCGCCCAGACCGAACC
Found at i:7794271 original size:112 final size:114
Alignment explanation
Indices: 7794058--7794293 Score: 297
Period size: 112 Copynumber: 2.1 Consensus size: 114
7794048 GTACTTATCC
7794058 GATCGATCCCTCTCTTAAAAGGATCGATCTATTTTTCATACAGAATAGAATTTCCATTTAAAAAT
1 GATCGATCCCTCTCTTAAAAGGATCGATCTATTTTTCATACAGAATAG-ATTTCCATTTAAAAAT
* * * * * *
7794123 TCATAAAAGGGATCGATCCCCTCACATAGGGGATCGATCA-CTTAGGTATGG
65 TAATAAAA-GGATCGATCCCCCCACATAAGAGATCGATCACCTAAGGAAT-G
7794174 GATCGATCCCTCTCTT-AAA-GATCGATCTATTTTT-ATACAGAAT-G-TTATGCTCATTTAAAA
1 GATCGATCCCTCTCTTAAAAGGATCGATCTATTTTTCATACAGAATAGATT-T-C-CATTTAAAA
*
7794234 ATCTAATAAAA-GATCGATCCCCCCATATAAGAGATCGATCACCTAAGGAATG
63 AT-TAATAAAAGGATCGATCCCCCCACATAAGAGATCGATCACCTAAGGAATG
7794286 GATCGATC
1 GATCGATC
7794294 AGGTATACTA
Statistics
Matches: 108, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
110 2 0.02
111 1 0.01
112 37 0.34
113 27 0.25
114 22 0.20
115 3 0.03
116 16 0.15
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (114 bp):
GATCGATCCCTCTCTTAAAAGGATCGATCTATTTTTCATACAGAATAGATTTCCATTTAAAAATT
AATAAAAGGATCGATCCCCCCACATAAGAGATCGATCACCTAAGGAATG
Found at i:7800507 original size:13 final size:13
Alignment explanation
Indices: 7800489--7800513 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7800479 TGGTTTCTTG
7800489 TAAAAATCATCAT
1 TAAAAATCATCAT
7800502 TAAAAATCATCA
1 TAAAAATCATCA
7800514 AATCACACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (13 bp):
TAAAAATCATCAT
Found at i:7802892 original size:95 final size:95
Alignment explanation
Indices: 7802724--7802897 Score: 249
Period size: 95 Copynumber: 1.8 Consensus size: 95
7802714 GTACTTACCC
**
7802724 GATCGATCCCTTTCTTAAAAGGATCAATTTATTTTTCATACAGAATGGAATCCCCATTTAAAAAT
1 GATCGATCCCTCCCTTAAAAGGATCAATTTATTTTTCATACAGAATGGAATCCCCATTTAAAAAT
* *
7802789 CGATAAAAGGGATCGATCACCTAGGCATGG
66 CGAGAAAAGAGATCGATCACCTAGGCATGG
* * ** **
7802819 GATCGATCCCTCCCTTAAAGGGATCGATTTATTTTTCATACAGAATGTTATCCTTATTTAAAAAT
1 GATCGATCCCTCCCTTAAAAGGATCAATTTATTTTTCATACAGAATGGAATCCCCATTTAAAAAT
*
7802884 CTAGAAAAGAGATC
66 CGAGAAAAGAGATC
7802898 AATCCCTTCA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
95 68 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (95 bp):
GATCGATCCCTCCCTTAAAAGGATCAATTTATTTTTCATACAGAATGGAATCCCCATTTAAAAAT
CGAGAAAAGAGATCGATCACCTAGGCATGG
Found at i:7810772 original size:54 final size:54
Alignment explanation
Indices: 7810694--7810809 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
7810684 AAAGTTTTAT
* * * * * *
7810694 CATAATAAATGTGGTGCACAAGGGCACATTGAGCGTTTTGGCACGGGACCTTAA
1 CATAAGAAATATGATGCACAAGGGCACATTAAGCGTGTTGGCACGGAACCTTAA
* * *
7810748 CATAAGAAATATGATGCACTAGGGCATATTAAGCGTGTTGGCATGGAACCTTAA
1 CATAAGAAATATGATGCACAAGGGCACATTAAGCGTGTTGGCACGGAACCTTAA
*
7810802 CACAAGAA
1 CATAAGAA
7810810 GTGTGGTGCT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
CATAAGAAATATGATGCACAAGGGCACATTAAGCGTGTTGGCACGGAACCTTAA
Found at i:7810841 original size:54 final size:54
Alignment explanation
Indices: 7810708--7810841 Score: 128
Period size: 54 Copynumber: 2.5 Consensus size: 54
7810698 ATAAATGTGG
* * *
7810708 TGCAC-AAGGGCACATTGAGCGTTTTGGCACGGGACCTTAACATAAGAAATATGA
1 TGCACTAA-GGCACATTGAGCGTGTTGGCACGGAACCTTAACACAAGAAATATGA
* * * * * * *
7810762 TGCACTAGGGCATATTAAGCGTGTTGGCATGGAACCTTAACACAAGAAGTGTGG
1 TGCACTAAGGCACATTGAGCGTGTTGGCACGGAACCTTAACACAAGAAATATGA
* *
7810816 TGC-TTAAAGGCACATTGAGCATGTTG
1 TGCACT-AAGGCACATTGAGCGTGTTG
7810842 ATAAGAAATG
Statistics
Matches: 63, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
53 1 0.02
54 61 0.97
55 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (54 bp):
TGCACTAAGGCACATTGAGCGTGTTGGCACGGAACCTTAACACAAGAAATATGA
Found at i:7819351 original size:22 final size:22
Alignment explanation
Indices: 7819308--7819351 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7819298 ATAATTATTT
* *
7819308 ATTTATTTAAAATTATAAATAA
1 ATTTATATAAAATAATAAATAA
* *
7819330 ATTTATATAATATAATACATAA
1 ATTTATATAAAATAATAAATAA
7819352 TAAACAAATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTATATAAAATAATAAATAA
Found at i:7821283 original size:25 final size:24
Alignment explanation
Indices: 7821224--7821290 Score: 86
Period size: 25 Copynumber: 2.9 Consensus size: 24
7821214 AAATTTAGAT
7821224 TTTTCAAATAAGAATCTTT--GAA
1 TTTTCAAATAAGAATCTTTAAGAA
* *
7821246 TTTT-GAATGAGAATCTTTAAGAA
1 TTTTCAAATAAGAATCTTTAAGAA
7821269 GTTTTCAAATAAGAATCTTTAA
1 -TTTTCAAATAAGAATCTTTAA
7821291 ATGAGCATCT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 12 0.32
22 4 0.11
23 3 0.08
24 4 0.11
25 14 0.38
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (24 bp):
TTTTCAAATAAGAATCTTTAAGAA
Found at i:7821300 original size:14 final size:14
Alignment explanation
Indices: 7821251--7821316 Score: 50
Period size: 14 Copynumber: 4.9 Consensus size: 14
7821241 TTGAATTTTG
7821251 AATGAGAATCTTT-
1 AATGAGAATCTTTA
*
7821264 AA-GA-AGT-TTTCA
1 AATGAGAATCTTT-A
*
7821276 AATAAGAATCTTTA
1 AATGAGAATCTTTA
* * *
7821290 AATGAGCATCTATG
1 AATGAGAATCTTTA
7821304 AATGAGAATCTTT
1 AATGAGAATCTTT
7821317 GTCATTGAGT
Statistics
Matches: 39, Mismatches: 9, Indels: 9
0.68 0.16 0.16
Matches are distributed among these distances:
10 3 0.08
11 2 0.05
12 4 0.10
13 3 0.08
14 24 0.62
15 3 0.08
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (14 bp):
AATGAGAATCTTTA
Found at i:7821423 original size:45 final size:46
Alignment explanation
Indices: 7821341--7821428 Score: 124
Period size: 45 Copynumber: 1.9 Consensus size: 46
7821331 AATGAAAGTC
7821341 TTGGATGTGAATCACCAAAAGTTTTCGAATGAAAACCTTTGAAATT
1 TTGGATGTGAATCACCAAAAGTTTTCGAATGAAAACCTTTGAAATT
* * * * *
7821387 TTGGATGTGAA-CCCCTAAATTTTTTGAATGAGAACCTTTGAA
1 TTGGATGTGAATCACCAAAAGTTTTCGAATGAAAACCTTTGAA
7821429 TTTAGATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 26 0.70
46 11 0.30
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (46 bp):
TTGGATGTGAATCACCAAAAGTTTTCGAATGAAAACCTTTGAAATT
Found at i:7821430 original size:23 final size:23
Alignment explanation
Indices: 7821362--7821431 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 23
7821352 TCACCAAAAG
* *
7821362 TTTTCGAATGAAAACCTTTGAA-
1 TTTTTGAATGAGAACCTTTGAAT
* * * ** *
7821384 ATTTTGGATGTGAACCCCTAAAT
1 TTTTTGAATGAGAACCTTTGAAT
7821407 TTTTTGAATGAGAACCTTTGAAT
1 TTTTTGAATGAGAACCTTTGAAT
7821430 TT
1 TT
7821432 AGATTTTATC
Statistics
Matches: 33, Mismatches: 14, Indels: 1
0.69 0.29 0.02
Matches are distributed among these distances:
22 14 0.42
23 19 0.58
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (23 bp):
TTTTTGAATGAGAACCTTTGAAT
Found at i:7822031 original size:87 final size:86
Alignment explanation
Indices: 7821829--7822207 Score: 424
Period size: 87 Copynumber: 4.4 Consensus size: 86
7821819 AAGTATTATT
*
7821829 TTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCCTTA-TTATTTTTTCAAAATTGTTAAGCCT
1 TTTTTCAAAGTTGTTGAGCCTCTATTTAGA-GAGCCTTATTTA-TTTTTCAAAATTGTTAAGCCT
* * * *
7821893 CTGCTTAGAGAAGTCTTA-TTAT
64 CTACTTAGAGGAGCCTTATTTAC
* * *
7821915 TTTTTCAAAGTTGTTGAGCCTTTACTTAGAGAAGCTTTATTTATTTTTCAAAATTGTTAAGCCTC
1 TTTTTCAAAGTTGTTGAGCCTCTATTTAGAG-AGCCTTATTTATTTTTCAAAATTGTTAAGCCTC
* *
7821980 TACTTAAATGAGCCTTATTTAC
65 TACTTAGAGGAGCCTTATTTAC
* * * * *
7822002 TTTTTCAAAATTGTTGAGCCTCTAATTAGATGAGCCTTATTTATTTTTTAAAGTTGTTGAGCCTC
1 TTTTTCAAAGTTGTTGAGCCTCTATTTAGA-GAGCCTTATTTATTTTTCAAAATTGTTAAGCCTC
**
7822067 TGTTTAGAGGAGCCTTATTTAC
65 TACTTAGAGGAGCCTTATTTAC
* * * *
7822089 TTTTCCAAAAGTTGTTGAGCATCTATTTAGATGAGCCTTATTTATTTTTCAGAAGTCGTTGAA-C
1 TTTTTC-AAAGTTGTTGAGCCTCTATTTAGA-GAGCCTTATTTATTTTTCA-AAATTGTT-AAGC
* * *
7822153 CTTTATTTAGAGGAGCTTTATTTAC
62 CTCTACTTAGAGGAGCCTTATTTAC
* *
7822178 -TTTTCAAAGTCGTGGAGCCTCTATTTAGAG
1 TTTTTCAAAGTTGTTGAGCCTCTATTTAGAG
7822208 GAGTTTTTAT
Statistics
Matches: 251, Mismatches: 35, Indels: 14
0.84 0.12 0.05
Matches are distributed among these distances:
85 1 0.00
86 68 0.27
87 106 0.42
88 45 0.18
89 30 0.12
90 1 0.00
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.44
Consensus pattern (86 bp):
TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGAGCCTTATTTATTTTTCAAAATTGTTAAGCCTCT
ACTTAGAGGAGCCTTATTTAC
Found at i:7822174 original size:44 final size:43
Alignment explanation
Indices: 7821829--7822210 Score: 417
Period size: 43 Copynumber: 8.8 Consensus size: 43
7821819 AAGTATTATT
*
7821829 TTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCCTTA-TTA
1 TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCCTTATTTA
* * ** * *
7821871 TTTTTTCAAAATTGTTAAGCCTCTGCTTAGAGAAGTCTTA-TTA
1 -TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCCTTATTTA
* * * *
7821914 TTTTTTCAAAGTTGTTGAGCCTTTACTTAGAGAAGCTTTATTTA
1 -TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCCTTATTTA
* * * * *
7821958 TTTTTCAAAATTGTTAAGCCTCTACTTAAATGAGCCTTATTTA
1 TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCCTTATTTA
* * *
7822001 CTTTTTCAAAATTGTTGAGCCTCTAATTAGATGAGCCTTATTTA
1 -TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCCTTATTTA
* *
7822045 TTTTTTAAAGTTGTTGAGCCTCTGTTTAGAGGAGCCTTATTTA
1 TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCCTTATTTA
* * *
7822088 CTTTTCCAAAAGTTGTTGAGCATCTATTTAGATGAGCCTTATTTA
1 -TTTTTC-AAAGTTGTTGAGCCTCTATTTAGAGGAGCCTTATTTA
* * * *
7822133 TTTTTCAGAAGTCGTTGAACCTTTATTTAGAGGAGCTTTATTTA
1 TTTTTCA-AAGTTGTTGAGCCTCTATTTAGAGGAGCCTTATTTA
* * *
7822177 CTTTTCAAAGTCGTGGAGCCTCTATTTAGAGGAG
1 TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAG
7822211 TTTTTATATT
Statistics
Matches: 292, Mismatches: 42, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
43 170 0.58
44 88 0.30
45 34 0.12
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.43
Consensus pattern (43 bp):
TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCCTTATTTA
Found at i:7822557 original size:3 final size:3
Alignment explanation
Indices: 7822549--7822605 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
7822539 AGTGATAATG
7822549 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7822597 TAA TAA TAA
1 TAA TAA TAA
7822606 ATAAAAAGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7823374 original size:24 final size:24
Alignment explanation
Indices: 7823342--7823397 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
7823332 CTACATCTTT
7823342 GGAGCTGAATTTTGTGTTTGTAGC
1 GGAGCTGAATTTTGTGTTTGTAGC
7823366 GGAGCTGAATTTTGTGTTTGTAGC
1 GGAGCTGAATTTTGTGTTTGTAGC
*
7823390 CGAGCTGA
1 GGAGCTGA
7823398 GTTCCAGCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.18, C:0.11, G:0.34, T:0.38
Consensus pattern (24 bp):
GGAGCTGAATTTTGTGTTTGTAGC
Found at i:7823473 original size:21 final size:21
Alignment explanation
Indices: 7823430--7823473 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7823420 ATTTTGGTTT
* *
7823430 TTATTTTATTTATTTATTTAG
1 TTATTATATTTATTTATTAAG
7823451 TTATTATATTTATTT-TATAAG
1 TTATTATATTTATTTAT-TAAG
7823472 TT
1 TT
7823474 TTTTTTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
TTATTATATTTATTTATTAAG
Found at i:7827981 original size:20 final size:20
Alignment explanation
Indices: 7827956--7828001 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7827946 TATTAGGCAT
7827956 GTGGGGAGAGATTGGATGGG
1 GTGGGGAGAGATTGGATGGG
* * *
7827976 GTGGGGAGGGATTGGGTGTG
1 GTGGGGAGAGATTGGATGGG
7827996 GTGGGG
1 GTGGGG
7828002 TGTTGGGGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.65, T:0.22
Consensus pattern (20 bp):
GTGGGGAGAGATTGGATGGG
Found at i:7828019 original size:39 final size:39
Alignment explanation
Indices: 7827975--7828068 Score: 152
Period size: 39 Copynumber: 2.4 Consensus size: 39
7827965 GATTGGATGG
* *
7827975 GGTGGGGAGGGATTGGGTGTGGTGGGGTGTTGGGGGGAA
1 GGTGGGGAGGGATTGGGTGTGGTAGGATGTTGGGGGGAA
*
7828014 GGTGGGGAGGGATTGGGTTTGGTAGGATGTTGGGGGGAA
1 GGTGGGGAGGGATTGGGTGTGGTAGGATGTTGGGGGGAA
*
7828053 GGTGGAGAGGGATTGG
1 GGTGGGGAGGGATTGG
7828069 ATGGGGGTGG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 51 1.00
ACGTcount: A:0.14, C:0.00, G:0.63, T:0.23
Consensus pattern (39 bp):
GGTGGGGAGGGATTGGGTGTGGTAGGATGTTGGGGGGAA
Found at i:7828609 original size:26 final size:26
Alignment explanation
Indices: 7828581--7828629 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
7828571 TAAAAAATAA
*
7828581 AAAATATAGGTTTGAAAA-TTTTATT
1 AAAATATAAGTTTGAAAACTTTTATT
7828606 AAAATATAAGTTTGAAAACTTTTA
1 AAAATATAAGTTTGAAAACTTTTA
7828630 AGTTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41
Consensus pattern (26 bp):
AAAATATAAGTTTGAAAACTTTTATT
Found at i:7830717 original size:15 final size:14
Alignment explanation
Indices: 7830691--7830724 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
7830681 ATATTATTGC
*
7830691 TTTAAAATAT-TAA
1 TTTAAAATATATTA
7830704 TTTAAAATATATTA
1 TTTAAAATATATTA
7830718 TTTAAAA
1 TTTAAAA
7830725 ATTTATTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TTTAAAATATATTA
Found at i:7832422 original size:18 final size:18
Alignment explanation
Indices: 7832399--7832525 Score: 93
Period size: 18 Copynumber: 7.1 Consensus size: 18
7832389 TATGGTTATT
7832399 ATCCACCTCAAATGTATC
1 ATCCACCTCAAATGTATC
*
7832417 ATCCACCTCCTCAAATATATC
1 ATCCA---CCTCAAATGTATC
*
7832438 TTCCACCTCAAATGTATC
1 ATCCACCTCAAATGTATC
* * *
7832456 AGT-TACCACAAATGTACC
1 A-TCCACCTCAAATGTATC
*
7832474 CTCCACCAT-AAATGTATC
1 ATCCACC-TCAAATGTATC
* *
7832492 AT---CCTTAAATATATC
1 ATCCACCTCAAATGTATC
*
7832507 CTCCACCTCAAATGTATC
1 ATCCACCTCAAATGTATC
7832525 A
1 A
7832526 AGAACAAAGG
Statistics
Matches: 82, Mismatches: 17, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
14 1 0.01
15 11 0.13
17 1 0.01
18 52 0.63
19 1 0.01
21 16 0.20
ACGTcount: A:0.34, C:0.32, G:0.05, T:0.29
Consensus pattern (18 bp):
ATCCACCTCAAATGTATC
Found at i:7832464 original size:21 final size:20
Alignment explanation
Indices: 7832396--7832464 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
7832386 CTATATGGTT
7832396 ATTATCCACCTCAAATGTATC
1 ATTA-CCACCTCAAATGTATC
* * *
7832417 ATCCACCTCCTCAAATATATC
1 AT-TACCACCTCAAATGTATC
7832438 -TT-CCACCTCAAATGTATC
1 ATTACCACCTCAAATGTATC
7832456 AGTTACCAC
1 A-TTACCAC
7832465 AAATGTACCC
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
18 14 0.37
20 3 0.08
21 20 0.53
22 1 0.03
ACGTcount: A:0.32, C:0.33, G:0.04, T:0.30
Consensus pattern (20 bp):
ATTACCACCTCAAATGTATC
Found at i:7832917 original size:6 final size:6
Alignment explanation
Indices: 7832906--7832933 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7832896 ATAAGAGTTT
7832906 TTATAA TTATAA TTATAA TTATAA TTAT
1 TTATAA TTATAA TTATAA TTATAA TTAT
7832934 TCCATTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTATAA
Found at i:7835559 original size:81 final size:80
Alignment explanation
Indices: 7835405--7835857 Score: 436
Period size: 81 Copynumber: 5.7 Consensus size: 80
7835395 AATAGAGGTT
* * * * * * * *
7835405 ATGAAAATTTAAATTCAAAAGGCTTC-TCTAACTAAAGGCAACG--ACGTGAAATTCAGAAGGCT
1 ATGAAACTTTAAATTTAAAAAGC-TCATCTAACCAAAGGCAATGAAACTTTAAATTCAAAAGGCT
7835467 CCTCTAACTAGAGGCA
65 CCTCTAACTAGAGGCA
** *
7835483 ATGAAACTTTAAATGTTAAAAAGCTCATCTAACCAAAGGCAACAAAACTTTAAATTCAAAAAGCT
1 ATGAAACTTTAAAT-TTAAAAAGCTCATCTAACCAAAGGCAATGAAACTTTAAATTCAAAAGGCT
* *
7835548 CTTTTAACTAGAGGCA
65 CCTCTAACTAGAGGCA
* * *
7835564 ATGAAACTTT-AATGTTAAAAAACTCTTTTAACCAGAAGTG--ATGAAACTTTAAATTCAAAAGG
1 ATGAAACTTTAAAT-TTAAAAAGCTCATCTAACCA-AAG-GCAATGAAACTTTAAATTCAAAAGG
* *
7835626 CTCCTCTAACCAGAGGTA
63 CTCCTCTAACTAGAGGCA
** ** * *
7835644 ACAAAACTTTAAATTT-AAAAGTCTCCCCGAACCAAAGGCAATGAAACTTTAAATGTTAAAAGGC
1 ATGAAACTTTAAATTTAAAAAG-CTCATCTAACCAAAGGCAATGAAACTTTAAAT-TCAAAAGGC
*
7835708 TCCTCTAACTAAAGGCA
64 TCCTCTAACTAGAGGCA
* * * ** *
7835725 ATGAAACTTTAAATTCAAAAGGCTCATCTAACCAGAGATAATGAAACTTTAAATGTTAAAAGG-T
1 ATGAAACTTTAAATTTAAAAAGCTCATCTAACCAAAGGCAATGAAACTTTAAAT-TCAAAAGGCT
*
7835789 GCCTCTAACCAGAGGCA
65 -CCTCTAACTAGAGGCA
* * * * *
7835806 ATGATACTTTTAATTCAAAAGGCTCATCTAACCAGAGGCAATGAAACTTTAA
1 ATGAAACTTTAAATTTAAAAAGCTCATCTAACCAAAGGCAATGAAACTTTAA
7835858 GTGGCTCCTC
Statistics
Matches: 314, Mismatches: 48, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
78 16 0.05
79 29 0.09
80 87 0.28
81 177 0.56
82 5 0.02
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (80 bp):
ATGAAACTTTAAATTTAAAAAGCTCATCTAACCAAAGGCAATGAAACTTTAAATTCAAAAGGCTC
CTCTAACTAGAGGCA
Found at i:7835563 original size:40 final size:40
Alignment explanation
Indices: 7835405--7835857 Score: 385
Period size: 40 Copynumber: 11.3 Consensus size: 40
7835395 AATAGAGGTT
* * * * *
7835405 ATGAAAATTTAAATTCAAAAGGCTTCTCTAACTAAAGGCA
1 ATGAAACTTTAAATTCAAAAAGCTCCTCTAACCAGAGGCA
* * * * * *
7835445 ACG--ACGTGAAATTCAGAAGGCTCCTCTAACTAGAGGCA
1 ATGAAACTTTAAATTCAAAAAGCTCCTCTAACCAGAGGCA
* * *
7835483 ATGAAACTTTAAATGTTAAAAAGCTCATCTAACCAAAGGCA
1 ATGAAACTTTAAAT-TCAAAAAGCTCCTCTAACCAGAGGCA
** * * *
7835524 ACAAAACTTTAAATTCAAAAAGCTCTTTTAACTAGAGGCA
1 ATGAAACTTTAAATTCAAAAAGCTCCTCTAACCAGAGGCA
* * * * * **
7835564 ATGAAACTTT-AATGTTAAAAAACTCTTTTAACCAGAAGTG
1 ATGAAACTTTAAAT-TCAAAAAGCTCCTCTAACCAGAGGCA
* *
7835604 ATGAAACTTTAAATTCAAAAGGCTCCTCTAACCAGAGGTA
1 ATGAAACTTTAAATTCAAAAAGCTCCTCTAACCAGAGGCA
** * * * *
7835644 ACAAAACTTTAAATT-TAAAAGTCTCCCCGAACCAAAGGCA
1 ATGAAACTTTAAATTCAAAAAG-CTCCTCTAACCAGAGGCA
* * * *
7835684 ATGAAACTTTAAATGTTAAAAGGCTCCTCTAACTAAAGGCA
1 ATGAAACTTTAAAT-TCAAAAAGCTCCTCTAACCAGAGGCA
* * **
7835725 ATGAAACTTTAAATTCAAAAGGCTCATCTAACCAGAGATA
1 ATGAAACTTTAAATTCAAAAAGCTCCTCTAACCAGAGGCA
* *
7835765 ATGAAACTTTAAATGT-TAAAAGGTGCCTCTAACCAGAGGCA
1 ATGAAACTTTAAAT-TCAAAAAGCT-CCTCTAACCAGAGGCA
* * * *
7835806 ATGATACTTTTAATTCAAAAGGCTCATCTAACCAGAGGCA
1 ATGAAACTTTAAATTCAAAAAGCTCCTCTAACCAGAGGCA
7835846 ATGAAACTTTAA
1 ATGAAACTTTAA
7835858 GTGGCTCCTC
Statistics
Matches: 329, Mismatches: 73, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
38 31 0.09
39 7 0.02
40 191 0.58
41 96 0.29
42 4 0.01
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (40 bp):
ATGAAACTTTAAATTCAAAAAGCTCCTCTAACCAGAGGCA
Found at i:7835756 original size:121 final size:120
Alignment explanation
Indices: 7835461--7835857 Score: 444
Period size: 121 Copynumber: 3.3 Consensus size: 120
7835451 TGAAATTCAG
* * * * * *
7835461 AAGGCTCCTCTAACTAGAGGCAATGAAACTTTAAATGTTAAAAAGCTCATCTAACCAAAGGCAAC
1 AAGGCTCCTCTAACCAAAGGCAATGAAACTTTAAAT-TCAAAAGGCTCATCTAACCAGAGGTAAC
* * * *
7835526 AAAACTTTAAATTCAAAAAG-CTCTTTTAACTAGAGGCAATGAAACTTTAATGTTAA
65 AAAACTTTAAATT-TAAAAGTCTCCTCTAACCAGAGGCAATGAAACTTTAATGTTAA
** * * *
7835582 AAAACTCTTTTAACCAGAAGTG--ATGAAACTTTAAATTCAAAAGGCTCCTCTAACCAGAGGTAA
1 AAGGCTCCTCTAACCA-AAG-GCAATGAAACTTTAAATTCAAAAGGCTCATCTAACCAGAGGTAA
* * *
7835645 CAAAACTTTAAATTTAAAAGTCTCCCCGAACCAAAGGCAATGAAACTTTAAATGTTAA
64 CAAAACTTTAAATTTAAAAGTCTCCTCTAACCAGAGGCAATGAAACTTT-AATGTTAA
* * **
7835703 AAGGCTCCTCTAACTAAAGGCAATGAAACTTTAAATTCAAAAGGCTCATCTAACCAGAGATAATG
1 AAGGCTCCTCTAACCAAAGGCAATGAAACTTTAAATTCAAAAGGCTCATCTAACCAGAGGTAACA
* * *
7835768 AAACTTTAAATGTTAAAAGGT-GCCTCTAACCAGAGGCAATGATACTTTTAAT-TCAA
66 AAACTTTAAAT-TTAAAA-GTCTCCTCTAACCAGAGGCAATGAAAC-TTTAATGTTAA
* *
7835824 AAGGCTCATCTAACCAGAGGCAATGAAACTTTAA
1 AAGGCTCCTCTAACCAAAGGCAATGAAACTTTAA
7835858 GTGGCTCCTC
Statistics
Matches: 231, Mismatches: 36, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
119 6 0.03
120 61 0.26
121 128 0.55
122 30 0.13
123 6 0.03
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (120 bp):
AAGGCTCCTCTAACCAAAGGCAATGAAACTTTAAATTCAAAAGGCTCATCTAACCAGAGGTAACA
AAACTTTAAATTTAAAAGTCTCCTCTAACCAGAGGCAATGAAACTTTAATGTTAA
Found at i:7836062 original size:40 final size:39
Alignment explanation
Indices: 7836035--7836219 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 39
7836025 GGCCCATTTG
*
7836035 ACCAAAGGCAATGAAACTTTAAATTTAAAAGGCTCTTCTG
1 ACCAAAGGCAATGAAACTTTAAATTTAAAAGGCTCTT-TA
* * *
7836075 ACCAAAGGCAACGGAATTTTAAATTTAAAAGGCTCTTCTA
1 ACCAAAGGCAATGAAACTTTAAATTTAAAAGGCTCTT-TA
*** * * *
7836115 ACCAAAAATAATAAAACTATAAATGTTAAAAGGCTTCTCTA
1 ACCAAAGGCAATGAAACTTTAAAT-TTAAAAGGC-TCTTTA
* * *
7836156 ACCAAAGGCAATGAAACTTTAAATTCAAAAAGCTCATCTA
1 ACCAAAGGCAATGAAACTTTAAATTTAAAAGGCTC-TTTA
* *
7836196 ACCAGAGGCAACGAAACTTTAAAT
1 ACCAAAGGCAATGAAACTTTAAAT
7836220 GGCTTCTCTG
Statistics
Matches: 120, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 2 0.02
40 85 0.71
41 30 0.25
42 3 0.03
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (39 bp):
ACCAAAGGCAATGAAACTTTAAATTTAAAAGGCTCTTTA
Found at i:7836084 original size:360 final size:360
Alignment explanation
Indices: 7835674--7836479 Score: 1161
Period size: 360 Copynumber: 2.2 Consensus size: 360
7835664 GTCTCCCCGA
* *
7835674 ACCAAAGGCAATGAAACTTTAAATGTTAAAAGGCTCCTCTAACTAAAGGCAATGAAACTTTAAAT
1 ACCAAAGGCAATGAAACTTTAAAT-TTAAAAGGCTCATCTAACCAAAGGCAATGAAACTTTAAAT
* * * * *
7835739 TCAAAAGGCTCATCTAACCAGAGATAATGAAACTTTAAATGTTAAAAGG-TGCCTCTAACCAGAG
65 TCAAAAGGCTCATCTAACCAAAAATAATAAAACTATAAATGTTAAAAGGCT-CCTCTAACCAAAG
* * * * *
7835803 GCAATGATACTTTTAATTCAAAAGGCTCATCTAACCAGAGGCAATGAAACTTTAAGTGGCTCCTC
129 GCAATGAAACTTTAAATTCAAAAAGCTCATCTAACCAGAGGCAACGAAACTTTAAATGGCTCCTC
***
7835868 TGACCAAAGATAACAAAACTTTAAATTAAAAATCT-GAAAGGACTTATAGATTATGCCCTTTGGT
194 TGACCAAAGATAACAAAACTTTAAATTAAAAATCTAGAAA-GACTTATAGATTATGCCCTTCAAT
7835932 CTTACAAATCATG-CTTAATTTTGATAAAGTCATCTAACCAGAGGCTTTTAAAATTAAAAAGCTC
258 CTTACAAATCATGTC-TAATTTTGATAAAGTCATCTAACCAGAGGCTTTTAAAATTAAAAAGCTC
*
7835996 TTCTGACCAAAGGTTATGAAACTTTAAATGGCCCATTTG
322 TTCTGACCAAAGGTTATGAAACTTTAAATGGCCAATTTG
* * * * *
7836035 ACCAAAGGCAATGAAACTTTAAATTTAAAAGGCTCTTCTGACCAAAGGCAACGGAATTTTAAATT
1 ACCAAAGGCAATGAAACTTTAAATTTAAAAGGCTCATCTAACCAAAGGCAATGAAACTTTAAATT
* * *
7836100 TAAAAGGCTCTTCTAACCAAAAATAATAAAACTATAAATGTTAAAAGGCTTCTCTAACCAAAGGC
66 CAAAAGGCTCATCTAACCAAAAATAATAAAACTATAAATGTTAAAAGGCTCCTCTAACCAAAGGC
*
7836165 AATGAAACTTTAAATTCAAAAAGCTCATCTAACCAGAGGCAACGAAACTTTAAATGGCTTCTCTG
131 AATGAAACTTTAAATTCAAAAAGCTCATCTAACCAGAGGCAACGAAACTTTAAATGGCTCCTCTG
* * * *
7836230 ACCAGAGGTAACAAAATTTTAAATTAAAAATCTAGGAAGACTTATAGATTATGCCCTTCAATCTT
196 ACCAAAGATAACAAAACTTTAAATTAAAAATCTAGAAAGACTTATAGATTATGCCCTTCAATCTT
*** * * *
7836295 ACAAATCATGTCTAATTTTGATGGTGTTATCTGACCAGAGGCTTTTAAAATTAAAAAGTTCTTCT
261 ACAAATCATGTCTAATTTTGATAAAGTCATCTAACCAGAGGCTTTTAAAATTAAAAAGCTCTTCT
*
7836360 GACCAAAGGTTATGAAACTTTAAATGGCTAATTTG
326 GACCAAAGGTTATGAAACTTTAAATGGCCAATTTG
* * * *
7836395 AGCAAGGGCAATGAAACTTTAAATTTAAAAGGTTCATCTAACCAAAGGC-ATAAAACTTTAAATT
1 ACCAAAGGCAATGAAACTTTAAATTTAAAAGGCTCATCTAACCAAAGGCAATGAAACTTTAAATT
* * *
7836459 CAGAAGGCTCCTCTGACCAAA
66 CAAAAGGCTCATCTAACCAAA
7836480 GGTAACAAAA
Statistics
Matches: 394, Mismatches: 48, Indels: 8
0.88 0.11 0.02
Matches are distributed among these distances:
359 28 0.07
360 337 0.86
361 29 0.07
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (360 bp):
ACCAAAGGCAATGAAACTTTAAATTTAAAAGGCTCATCTAACCAAAGGCAATGAAACTTTAAATT
CAAAAGGCTCATCTAACCAAAAATAATAAAACTATAAATGTTAAAAGGCTCCTCTAACCAAAGGC
AATGAAACTTTAAATTCAAAAAGCTCATCTAACCAGAGGCAACGAAACTTTAAATGGCTCCTCTG
ACCAAAGATAACAAAACTTTAAATTAAAAATCTAGAAAGACTTATAGATTATGCCCTTCAATCTT
ACAAATCATGTCTAATTTTGATAAAGTCATCTAACCAGAGGCTTTTAAAATTAAAAAGCTCTTCT
GACCAAAGGTTATGAAACTTTAAATGGCCAATTTG
Found at i:7836213 original size:81 final size:81
Alignment explanation
Indices: 7836035--7836220 Score: 223
Period size: 81 Copynumber: 2.3 Consensus size: 81
7836025 GGCCCATTTG
* * *
7836035 ACCAAAGGCAATGAAACTTTAAAT-TTAAAAGGCTCTTCTGACCAAAGGCAACGGAATTTTAAAT
1 ACCAAAGGCAATGAAACTTTAAATGTTAAAAGGCTCTTCTAACCAAAGGCAACGAAACTTTAAAT
* * *
7836099 TTAAAAGGCTCTTCTA
66 TCAAAAAGCTCATCTA
*** * * *
7836115 ACCAAAAATAATAAAACTATAAATGTTAAAAGGCT-TCTCTAACCAAAGGCAATGAAACTTTAAA
1 ACCAAAGGCAATGAAACTTTAAATGTTAAAAGGCTCT-TCTAACCAAAGGCAACGAAACTTTAAA
7836179 TTCAAAAAGCTCATCTA
65 TTCAAAAAGCTCATCTA
* *
7836196 ACCAGAGGCAACGAAACTTTAAATG
1 ACCAAAGGCAATGAAACTTTAAATG
7836221 GCTTCTCTGA
Statistics
Matches: 85, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
80 20 0.24
81 65 0.76
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.25
Consensus pattern (81 bp):
ACCAAAGGCAATGAAACTTTAAATGTTAAAAGGCTCTTCTAACCAAAGGCAACGAAACTTTAAAT
TCAAAAAGCTCATCTA
Found at i:7836653 original size:40 final size:40
Alignment explanation
Indices: 7836609--7836880 Score: 173
Period size: 40 Copynumber: 7.2 Consensus size: 40
7836599 GCAACGAAAC
* *
7836609 TTTAAATGGCTCTTTTAACCAAAGGCAAT-AAAGCTTTAAA
1 TTTAAAAGGCTCCTTTAACCAAAGGCAATGAAA-CTTTAAA
* *
7836649 TTTAAAAGGCTCCTTTGACCAAAGGTAATGAAACTTTAAA
1 TTTAAAAGGCTCCTTTAACCAAAGGCAATGAAACTTTAAA
* * * * **
7836689 TTAAAAAGGCTCATCTGACC--AGGCAACAAAACTTTAAA
1 TTTAAAAGGCTCCTTTAACCAAAGGCAATGAAACTTTAAA
* *
7836727 --T----GGCTCCTTTGACCAAAGGTAATGAAACTTTAAA
1 TTTAAAAGGCTCCTTTAACCAAAGGCAATGAAACTTTAAA
* * * * **
7836761 TTAAAAAGGCT-TTTCTAACTAAAGACAACAAAACTTTAAA
1 TTTAAAAGGCTCCTT-TAACCAAAGGCAATGAAACTTTAAA
* * * * *
7836801 TTCAAAA-GCTCCTCTAACTAGAGGCAATAAAACTTTAAA
1 TTTAAAAGGCTCCTTTAACCAAAGGCAATGAAACTTTAAA
* * *
7836840 --T----GGTTCCTTTAACTAAAGGCAATGAAACTTTGAA
1 TTTAAAAGGCTCCTTTAACCAAAGGCAATGAAACTTTAAA
7836874 TTTAAAA
1 TTTAAAA
7836881 ATTTGAAAGG
Statistics
Matches: 178, Mismatches: 36, Indels: 36
0.71 0.14 0.14
Matches are distributed among these distances:
32 11 0.06
34 42 0.24
36 1 0.01
38 15 0.08
39 27 0.15
40 79 0.44
41 3 0.02
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.29
Consensus pattern (40 bp):
TTTAAAAGGCTCCTTTAACCAAAGGCAATGAAACTTTAAA
Found at i:7836817 original size:39 final size:40
Alignment explanation
Indices: 7836751--7836840 Score: 119
Period size: 39 Copynumber: 2.3 Consensus size: 40
7836741 AAAGGTAATG
**
7836751 AAACTTTAAATTAAAAAGGCTTTTCTAACTAAAGACAACA
1 AAACTTTAAATTAAAAAGGCTCCTCTAACTAAAGACAACA
* * * *
7836791 AAACTTTAAATTCAAAA-GCTCCTCTAACTAGAGGCAATA
1 AAACTTTAAATTAAAAAGGCTCCTCTAACTAAAGACAACA
7836830 AAACTTTAAAT
1 AAACTTTAAAT
7836841 GGTTCCTTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 28 0.64
40 16 0.36
ACGTcount: A:0.48, C:0.17, G:0.08, T:0.28
Consensus pattern (40 bp):
AAACTTTAAATTAAAAAGGCTCCTCTAACTAAAGACAACA
Found at i:7836864 original size:113 final size:113
Alignment explanation
Indices: 7836374--7836881 Score: 468
Period size: 113 Copynumber: 4.5 Consensus size: 113
7836364 AAAGGTTATG
** * * * * * *
7836374 AAACTTTAAATGGCTAATTTGAGCAAGGGCAATGAAACTTTAAATTTAAAAGGTTCATCTAACCA
1 AAACTTTAAATGGCTCCTTTAACCAAAGGCAATGAAACTTTAAATTAAAAAGGCTCTTCTAACCA
* * * * * *
7836439 AAGGC-ATAAAACTTTAAATTCAGAAGGCTCCTCTGACCAAAGGTAACA
66 AAGACAACAAAACTTTAAATTCA-AAAGCTCCTCTAACCAGAGGCAACA
* * * * * *
7836487 AAACTTAAAATGGCTTCTTTGACCAAAGGCAATGAAACTTTAAATTAAAAAAAAAAGCTCCTCTG
1 AAACTTTAAATGGCTCCTTTAACCAAAGGCAATGAAACTTTAAATT----AAAAAGGCTCTTCTA
* * * ** * * *
7836552 ACCAGAGATAACAAAACATTAAATTCAAAAAATTTCTCTAACCAGATGCAACG
62 ACCAAAGACAACAAAACTTTAAATTC-AAAAGCTCCTCTAACCAGAGGCAACA
* * *
7836605 AAACTTTAAATGGCTCTTTTAACCAAAGGCAAT-AAAGCTTTAAATTTAAAAGGCTCCTT-TGAC
1 AAACTTTAAATGGCTCCTTTAACCAAAGGCAATGAAA-CTTTAAATTAAAAAGGCT-CTTCTAAC
** ** * * *
7836668 CAAAGGTAATGAAACTTTAAATTAAAAAGGCTCATCTGACC--AGGCAACA
64 CAAAGACAACAAAACTTTAAATTCAAAA-GCTCCTCTAACCAGAGGCAACA
* * * *
7836717 AAACTTTAAATGGCTCCTTTGACCAAAGGTAATGAAACTTTAAATTAAAAAGGCTTTTCTAACTA
1 AAACTTTAAATGGCTCCTTTAACCAAAGGCAATGAAACTTTAAATTAAAAAGGCTCTTCTAACCA
* *
7836782 AAGACAACAAAACTTTAAATTCAAAAGCTCCTCTAACTAGAGGCAATA
66 AAGACAACAAAACTTTAAATTCAAAAGCTCCTCTAACCAGAGGCAACA
* * *
7836830 AAACTTTAAATGGTTCCTTTAACTAAAGGCAATGAAACTTTGAATTTAAAAA
1 AAACTTTAAATGGCTCCTTTAACCAAAGGCAATGAAACTTT-AAATTAAAAA
7836882 TTTGAAAGGC
Statistics
Matches: 316, Mismatches: 65, Indels: 27
0.77 0.16 0.07
Matches are distributed among these distances:
111 11 0.03
112 78 0.25
113 92 0.29
114 45 0.14
115 2 0.01
117 19 0.06
118 68 0.22
119 1 0.00
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (113 bp):
AAACTTTAAATGGCTCCTTTAACCAAAGGCAATGAAACTTTAAATTAAAAAGGCTCTTCTAACCA
AAGACAACAAAACTTTAAATTCAAAAGCTCCTCTAACCAGAGGCAACA
Found at i:7840345 original size:8 final size:8
Alignment explanation
Indices: 7840332--7840362 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
7840322 CATTTTATGG
7840332 AAAAATAA
1 AAAAATAA
7840340 AAAAATAA
1 AAAAATAA
7840348 AATAAATAA
1 AA-AAATAA
7840357 AAAAAT
1 AAAAAT
7840363 GAAACAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
AAAAATAA
Found at i:7841567 original size:10 final size:10
Alignment explanation
Indices: 7841549--7841583 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
7841539 GATATATTTT
7841549 TAATAAAAAA
1 TAATAAAAAA
7841559 TAATTAAAAAA
1 TAA-TAAAAAA
*
7841570 TAAAAAAAAA
1 TAATAAAAAA
7841580 TAAT
1 TAAT
7841584 TTTTTCGACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (10 bp):
TAATAAAAAA
Found at i:7841568 original size:11 final size:11
Alignment explanation
Indices: 7841552--7841584 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7841542 ATATTTTTAA
7841552 TAAAAAATAAT
1 TAAAAAATAAT
7841563 TAAAAAATAA-
1 TAAAAAATAAT
*
7841573 AAAAAAATAAT
1 TAAAAAATAAT
7841584 T
1 T
7841585 TTTTCGACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
TAAAAAATAAT
Found at i:7849865 original size:13 final size:13
Alignment explanation
Indices: 7849818--7849867 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 13
7849808 ATCATTGCAT
7849818 AAAAT-ATT-TAA
1 AAAATCATTATAA
*
7849829 AAAATCA-AATAA
1 AAAATCATTATAA
* *
7849841 AAAATGACTATAA
1 AAAATCATTATAA
7849854 AAAATCATTATAA
1 AAAATCATTATAA
7849867 A
1 A
7849868 TATAATGAGA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
11 5 0.16
12 10 0.32
13 16 0.52
ACGTcount: A:0.66, C:0.06, G:0.02, T:0.26
Consensus pattern (13 bp):
AAAATCATTATAA
Found at i:7853903 original size:48 final size:48
Alignment explanation
Indices: 7853848--7853941 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
7853838 GGTTTAAACA
*
7853848 ATAAGTAAAGTT-AAAGTATAATAGTT-ATCATAAAAGATCATAAGTACC
1 ATAAGTAAA-TTCAAAGTATAACA-TTCATCATAAAAGATCATAAGTACC
*
7853896 ATAAGTAAATTCAAAGTATAACATTCATCATAGAAGATCATAAGTA
1 ATAAGTAAATTCAAAGTATAACATTCATCATAAAAGATCATAAGTA
7853942 ATCTCAAGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 4 0.10
48 38 0.90
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.29
Consensus pattern (48 bp):
ATAAGTAAATTCAAAGTATAACATTCATCATAAAAGATCATAAGTACC
Found at i:7854269 original size:14 final size:14
Alignment explanation
Indices: 7854234--7854269 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7854224 ATGCAATGAT
*
7854234 AATCTCATAATTAT
1 AATCTCATAATTAC
*
7854248 AATATCATAATTAC
1 AATCTCATAATTAC
7854262 AATCTCAT
1 AATCTCAT
7854270 TGTAATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (14 bp):
AATCTCATAATTAC
Found at i:7855063 original size:27 final size:26
Alignment explanation
Indices: 7855030--7855141 Score: 91
Period size: 27 Copynumber: 4.1 Consensus size: 26
7855020 TTTAAAATAC
* *
7855030 TATATTTTGAATGAAATTTTATTTTA
1 TATAATTTGAATGAAATTTTATTTGA
* * *
7855056 TATAATTTGCATCTAAGTTGATT-TATTGA
1 TATAATTTGAAT-GAAATT--TTAT-TTGA
*
7855085 TATAATTTGGAATGAAGTTTTATTTGA
1 TATAATTT-GAATGAAATTTTATTTGA
* *
7855112 TATAATTTGCATCTAAATTTTATTTGA
1 TATAATTTGAAT-GAAATTTTATTTGA
7855139 TAT
1 TAT
7855142 GTTTGTCTTT
Statistics
Matches: 69, Mismatches: 10, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
26 13 0.19
27 33 0.48
28 2 0.03
29 18 0.26
30 3 0.04
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.52
Consensus pattern (26 bp):
TATAATTTGAATGAAATTTTATTTGA
Found at i:7855090 original size:29 final size:27
Alignment explanation
Indices: 7855046--7855141 Score: 106
Period size: 27 Copynumber: 3.5 Consensus size: 27
7855036 TTGAATGAAA
*
7855046 TTTTATTTTATATAATTTGCATCTAAG
1 TTTTATTTGATATAATTTGCATCTAAG
* *
7855073 TTGATT-TATTGATATAATTTGGAAT-GAAG
1 TT--TTAT-TTGATATAATTT-GCATCTAAG
*
7855102 TTTTATTTGATATAATTTGCATCTAAA
1 TTTTATTTGATATAATTTGCATCTAAG
7855129 TTTTATTTGATAT
1 TTTTATTTGATAT
7855142 GTTTGTCTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
26 3 0.05
27 31 0.54
28 2 0.04
29 18 0.32
30 3 0.05
ACGTcount: A:0.31, C:0.04, G:0.11, T:0.53
Consensus pattern (27 bp):
TTTTATTTGATATAATTTGCATCTAAG
Found at i:7856791 original size:17 final size:17
Alignment explanation
Indices: 7856769--7856802 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7856759 ATATATTAAT
7856769 AATCATG-AAATTAAATA
1 AATCATGCAAA-TAAATA
7856786 AATCATGCAAATAAATA
1 AATCATGCAAATAAATA
7856803 TATTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.26
Consensus pattern (17 bp):
AATCATGCAAATAAATA
Found at i:7856833 original size:45 final size:41
Alignment explanation
Indices: 7856725--7856854 Score: 161
Period size: 41 Copynumber: 3.0 Consensus size: 41
7856715 GCAAATATAC
* ** **
7856725 ATAATCATGCAACCAAATATAATCACACAAATAAATATATTA
1 ATAATCATGAAATTAAATA-AATCATGCAAATAAATATATTA
7856767 ATAATCATGAAATTAAATAAATCATGCAAATAAATATATTA
1 ATAATCATGAAATTAAATAAATCATGCAAATAAATATATTA
*
7856808 ATAATCATGCAATTTAATTAATAAATCATGCAAATAAATATATTA
1 ATAATCATG-AAATT-A--AATAAATCATGCAAATAAATATATTA
7856853 AT
1 AT
7856855 TATGCAAGCA
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
41 29 0.37
42 20 0.26
43 1 0.01
45 28 0.36
ACGTcount: A:0.54, C:0.11, G:0.04, T:0.32
Consensus pattern (41 bp):
ATAATCATGAAATTAAATAAATCATGCAAATAAATATATTA
Found at i:7856897 original size:16 final size:18
Alignment explanation
Indices: 7856876--7856916 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
7856866 ATACATTAGA
7856876 CAAATAA-ATTA-TCATG
1 CAAATAATATTAGTCATG
7856892 CAAATATAATATTAGTCATG
1 C-AA-ATAATATTAGTCATG
7856912 CAAAT
1 CAAAT
7856917 TCATTGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
16 1 0.05
17 2 0.10
18 6 0.29
19 6 0.29
20 6 0.29
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (18 bp):
CAAATAATATTAGTCATG
Found at i:7856912 original size:20 final size:18
Alignment explanation
Indices: 7856879--7856916 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
7856869 CATTAGACAA
7856879 ATAAATTATCATGCAAAT
1 ATAAATTATCATGCAAAT
7856897 ATAATATTAGTCATGCAAAT
1 ATAA-ATTA-TCATGCAAAT
7856917 TCATTGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (18 bp):
ATAAATTATCATGCAAAT
Found at i:7857561 original size:12 final size:12
Alignment explanation
Indices: 7857544--7857573 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7857534 ACTAAACAAA
7857544 CAAAAATTAAAC
1 CAAAAATTAAAC
7857556 CAAAAATTAAAC
1 CAAAAATTAAAC
*
7857568 TAAAAA
1 CAAAAA
7857574 AATTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (12 bp):
CAAAAATTAAAC
Found at i:7859404 original size:16 final size:15
Alignment explanation
Indices: 7859356--7859417 Score: 54
Period size: 15 Copynumber: 4.0 Consensus size: 15
7859346 ATTTCTATTG
*
7859356 AATAATTTTAAAAAT
1 AATAATTTCAAAAAT
* *
7859371 AATTATTAT-AAATTAT
1 AATAATT-TCAAA-AAT
*
7859387 AACTATTTTCAAAAAT
1 AA-TAATTTCAAAAAT
7859403 AATAATTTCAAAAAT
1 AATAATTTCAAAAAT
7859418 TTTTCTCATT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
15 21 0.57
16 10 0.27
17 6 0.16
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (15 bp):
AATAATTTCAAAAAT
Found at i:7864613 original size:29 final size:29
Alignment explanation
Indices: 7864580--7864645 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
7864570 ATCTTTTAAA
* *
7864580 TTAAAATAAAATATATTATATATGATA-AT
1 TTAAAATAAAAT-GATTATAAATGATATAT
*
7864609 TTAAAAT-AAATGATTATAAATTATATAT
1 TTAAAATAAAATGATTATAAATGATATAT
7864637 TTAAAATAA
1 TTAAAATAA
7864646 TTTTAATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 11 0.34
28 13 0.41
29 8 0.25
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (29 bp):
TTAAAATAAAATGATTATAAATGATATAT
Found at i:7864614 original size:24 final size:26
Alignment explanation
Indices: 7864586--7864644 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
7864576 TAAATTAAAA
*
7864586 TAAAATAT-ATTATATATGATA-ATT
1 TAAAATATGATTATAAATGATATATT
*
7864610 TAAAATAAATGATTATAAATTATATATT
1 TAAAAT--ATGATTATAAATGATATATT
7864638 TAAAATA
1 TAAAATA
7864645 ATTTTAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
24 6 0.21
26 3 0.10
27 11 0.38
28 9 0.31
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.42
Consensus pattern (26 bp):
TAAAATATGATTATAAATGATATATT
Found at i:7865239 original size:17 final size:19
Alignment explanation
Indices: 7865199--7865248 Score: 68
Period size: 18 Copynumber: 2.6 Consensus size: 19
7865189 ATAAAAAATT
7865199 TATTAAAATATAATTTTAAAA
1 TATTAAAA-A-AATTTTAAAA
7865220 TA-TAAAAAAATTTT-AAA
1 TATTAAAAAAATTTTAAAA
7865237 TATTAAAAAAAT
1 TATTAAAAAAAT
7865249 AATTTTGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.18
18 15 0.54
19 1 0.04
20 5 0.18
21 2 0.07
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TATTAAAAAAATTTTAAAA
Found at i:7867712 original size:5 final size:5
Alignment explanation
Indices: 7867702--7867727 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7867692 AAATATAATT
7867702 TTAAA TTAAA TTAAA TTAAA TTAAA T
1 TTAAA TTAAA TTAAA TTAAA TTAAA T
7867728 AATAATTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TTAAA
Found at i:7867750 original size:33 final size:32
Alignment explanation
Indices: 7867690--7867751 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
7867680 AAATTGATTG
7867690 TTAAATATAATTTTAAATTAAATTAAATTAAA
1 TTAAATATAATTTTAAATTAAATTAAATTAAA
* *
7867722 TTAAATAATAATTGTTTATTTAAA-TAAATT
1 TTAAAT-ATAATT-TTAAATTAAATTAAATT
7867752 TTATTTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 6 0.23
33 12 0.46
34 8 0.31
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (32 bp):
TTAAATATAATTTTAAATTAAATTAAATTAAA
Found at i:7871262 original size:22 final size:20
Alignment explanation
Indices: 7871235--7871282 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
7871225 AAAAAATATT
7871235 ATAATAATTCATTTAGATAAAA
1 ATAATAATT--TTTAGATAAAA
* *
7871257 ATAAT-ATTTTTTGGTAAAA
1 ATAATAATTTTTAGATAAAA
7871276 ATAATAA
1 ATAATAA
7871283 GTTGAATCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 14 0.61
20 1 0.04
21 3 0.13
22 5 0.22
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (20 bp):
ATAATAATTTTTAGATAAAA
Found at i:7873220 original size:11 final size:11
Alignment explanation
Indices: 7873191--7873221 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7873181 AACTTCAGTC
*
7873191 TTTTTTTCTCT
1 TTTTTTTTTCT
7873202 TTTTTTTTTCT
1 TTTTTTTTTCT
7873213 TTTTTTTTT
1 TTTTTTTTT
7873222 TTTAATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:7873223 original size:13 final size:13
Alignment explanation
Indices: 7873191--7873222 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
7873181 AACTTCAGTC
7873191 TTTTTTTCTCTTT
1 TTTTTTTCTCTTT
7873204 TTTTTTTCT-TTT
1 TTTTTTTCTCTTT
7873216 TTTTTTT
1 TTTTTTT
7873223 TTAATTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (13 bp):
TTTTTTTCTCTTT
Found at i:7874760 original size:20 final size:20
Alignment explanation
Indices: 7874718--7874778 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
7874708 TAATGGATAC
*
7874718 TTTTAATATAAAATATAAATA
1 TTTTAATA-ATAATATAAATA
* *
7874739 TTTTAATAATAATATTACTA
1 TTTTAATAATAATATAAATA
* *
7874759 TTTTAATATTAATAAAAATA
1 TTTTAATAATAATATAAATA
7874779 ATATTTTAAG
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
20 25 0.76
21 8 0.24
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTTAATAATAATATAAATA
Found at i:7874818 original size:43 final size:44
Alignment explanation
Indices: 7874725--7874827 Score: 120
Period size: 43 Copynumber: 2.3 Consensus size: 44
7874715 TACTTTTAAT
* * *
7874725 ATAAAATATAAATATTTTAATAATAATATTACTATTTTAATATTA
1 ATAAAATAT-AATATTTTAAGAATAATAATACTATTTAAATATTA
*
7874770 ATAAAA-ATAATATTTTAAGAATAGTAATACTATTTGAAATATT-
1 ATAAAATATAATATTTTAAGAATAATAATACTATTT-AAATATTA
*
7874813 TTAAAATACTAATAT
1 ATAAAATA-TAATAT
7874828 AAATAATATC
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
43 29 0.58
44 9 0.18
45 12 0.24
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (44 bp):
ATAAAATATAATATTTTAAGAATAATAATACTATTTAAATATTA
Found at i:7874896 original size:16 final size:15
Alignment explanation
Indices: 7874871--7874934 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
7874861 ATATTAAAGT
7874871 AATATT-TTATTGTTA
1 AATATTATTATT-TTA
*
7874886 AATATTATTA-TTAA
1 AATATTATTATTTTA
* *
7874900 AATATAATTATTCTTG
1 AATATTATTATT-TTA
* *
7874916 AATATTAGTATTTTT
1 AATATTATTATTTTA
7874931 AATA
1 AATA
7874935 ATAAATAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
14 11 0.28
15 14 0.36
16 14 0.36
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.53
Consensus pattern (15 bp):
AATATTATTATTTTA
Found at i:7879650 original size:39 final size:40
Alignment explanation
Indices: 7879596--7879674 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
7879586 TAAACTTAAA
*
7879596 AAAAATTAATTTTTTTAG-TGTTTAAACAAGATGTCAAAT
1 AAAAATTAATATTTTTAGTTGTTTAAACAAGATGTCAAAT
* *
7879635 AAAAATTAATATTTTTAGTTTTTTAAACAAGATTTCAAAT
1 AAAAATTAATATTTTTAGTTGTTTAAACAAGATGTCAAAT
7879675 TTTCAACCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 17 0.47
40 19 0.53
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.43
Consensus pattern (40 bp):
AAAAATTAATATTTTTAGTTGTTTAAACAAGATGTCAAAT
Found at i:7880465 original size:23 final size:23
Alignment explanation
Indices: 7880430--7880477 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
7880420 TCATAAATGA
*
7880430 CTTAATACAAGATACATGAATCC
1 CTTAATACAAGATACAGGAATCC
**
7880453 CTTAATAGTAGATACAGGAATCC
1 CTTAATACAAGATACAGGAATCC
7880476 CT
1 CT
7880478 ATGAAGTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (23 bp):
CTTAATACAAGATACAGGAATCC
Found at i:7887721 original size:25 final size:24
Alignment explanation
Indices: 7887693--7887749 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
7887683 AATTAATGAT
7887693 TTTTGTT-TTATTTTAGATTATTTTA
1 TTTTGTTATTATTTT--ATTATTTTA
*
7887718 TTTTATTTATTATTTTATTATTTTA
1 TTTT-GTTATTATTTTATTATTTTA
*
7887743 ATTTGTT
1 TTTTGTT
7887750 GATTGATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
24 2 0.07
25 16 0.59
26 2 0.07
27 7 0.26
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (24 bp):
TTTTGTTATTATTTTATTATTTTA
Found at i:7887736 original size:8 final size:8
Alignment explanation
Indices: 7887709--7887742 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
7887699 TTTATTTTAG
7887709 ATTATTTT
1 ATTATTTT
*
7887717 ATTTTATTT
1 ATTAT-TTT
7887726 ATTATTTT
1 ATTATTTT
7887734 ATTATTTT
1 ATTATTTT
7887742 A
1 A
7887743 ATTTGTTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
ATTATTTT
Found at i:7890034 original size:21 final size:21
Alignment explanation
Indices: 7889983--7890035 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
7889973 TCTAGAAATC
**
7889983 TTTTGAATGTGAATCTTTGAA
1 TTTTGAATGTGAATCTTAAAA
* *
7890004 TCTTGTATGTGAAT-TTAAAAA
1 TTTTGAATGTGAATCTT-AAAA
7890025 TTTTGAATGTG
1 TTTTGAATGTG
7890036 GATTCCTAGA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.47
Consensus pattern (21 bp):
TTTTGAATGTGAATCTTAAAA
Found at i:7890123 original size:33 final size:33
Alignment explanation
Indices: 7890076--7890156 Score: 101
Period size: 33 Copynumber: 2.4 Consensus size: 33
7890066 TATAATGACG
7890076 AAATCTGAAATTCTTATC-AATCTAAATTCTTGCA
1 AAAT-TGAAATTCTTA-CAAATCTAAATTCTTGCA
* *
7890110 AAATTGAAATTCTTACAAATCTAAATTTTTGCG
1 AAATTGAAATTCTTACAAATCTAAATTCTTGCA
* *
7890143 AAACTAAAATTCTT
1 AAATTGAAATTCTT
7890157 GTGAATTTGA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
32 1 0.02
33 37 0.88
34 4 0.10
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (33 bp):
AAATTGAAATTCTTACAAATCTAAATTCTTGCA
Found at i:7890135 original size:16 final size:17
Alignment explanation
Indices: 7890076--7890136 Score: 67
Period size: 16 Copynumber: 3.7 Consensus size: 17
7890066 TATAATGACG
7890076 AAATCTGAAATTCTTATC
1 AAATCTGAAATTCTTA-C
*
7890094 -AATCT-AAATTCTTGC
1 AAATCTGAAATTCTTAC
7890109 AAAAT-TGAAATTCTTAC
1 -AAATCTGAAATTCTTAC
7890126 AAATCT-AAATT
1 AAATCTGAAATT
7890137 TTTGCGAAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
15 1 0.03
16 18 0.49
17 18 0.49
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.38
Consensus pattern (17 bp):
AAATCTGAAATTCTTAC
Found at i:7890195 original size:17 final size:17
Alignment explanation
Indices: 7890077--7890219 Score: 66
Period size: 16 Copynumber: 8.6 Consensus size: 17
7890067 ATAATGACGA
*
7890077 AATCTGAAATTCTT-ATC
1 AATCTGAAATTCTTGA-G
*
7890094 AATCT-AAATTCTTGCAA
1 AATCTGAAATTCTTG-AG
*
7890111 AAT-TGAAATTCTT-ACA
1 AATCTGAAATTCTTGA-G
* *
7890127 AATCT-AAATTTTTGCG
1 AATCTGAAATTCTTGAG
* * *
7890143 AAACTAAAATTCTTGTG
1 AATCTGAAATTCTTGAG
* * *
7890160 AATTTG-AATTCCTAAG
1 AATCTGAAATTCTTGAG
*
7890176 AATCTGAAATTCTTGGG
1 AATCTGAAATTCTTGAG
* * *
7890193 AATATG-AATTATTGGG
1 AATCTGAAATTCTTGAG
*
7890209 AATTTGAAATT
1 AATCTGAAATT
7890220 TTTCTAAATT
Statistics
Matches: 97, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
15 1 0.01
16 50 0.52
17 45 0.46
18 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (17 bp):
AATCTGAAATTCTTGAG
Found at i:7892479 original size:21 final size:21
Alignment explanation
Indices: 7892454--7892499 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7892444 CAATGGTTGG
*
7892454 ATTTAATTGATTTTATTTTAT
1 ATTTAATTGAATTTATTTTAT
* *
7892475 ATTTAATTTAATTTCTTTTAT
1 ATTTAATTGAATTTATTTTAT
7892496 -TTTA
1 ATTTA
7892500 TTTTTTTGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTTAATTGAATTTATTTTAT
Found at i:7898048 original size:33 final size:33
Alignment explanation
Indices: 7898006--7898644 Score: 465
Period size: 33 Copynumber: 19.5 Consensus size: 33
7897996 AAAAAAAAAA
*
7898006 CTTTAAGCCCAGTTTATCTAGCCATTAATGAAG
1 CTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
*
7898039 CTTTAAGCCCAGTTTATCTGGCC-TCAAATGAAG
1 CTTTAAGCCCAGTTTATCTGGCCAT-TAATGAAG
* * * *
7898072 ATTTAAGCCTAGTTTATCTAGCCATCAATG-A-
1 CTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * *
7898103 CATTTAAGCCCGGTTTATCTAGCCATAAAT-AAG
1 C-TTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* *
7898136 TTTTTAAAACCCAGTTTATCTGGCCATTAATGAAG
1 -CTTT-AAGCCCAGTTTATCTGGCCATTAATGAAG
* *
7898171 CTTTAAGCCCAATTTATCTGGCC-TTAAATAAAG
1 CTTTAAGCCCAGTTTATCTGGCCATT-AATGAAG
* * * * *
7898204 ATTTAAACCCAGTTTATCTAGCCATTAATAAAT
1 CTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
*
7898237 CTTTAAG-CCAGTTTATCTGATCTCA--AATGAAG
1 CTTTAAGCCCAGTTTATCTG-GC-CATTAATGAAG
*
7898269 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
1 CTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* *
7898302 CTTTAAGCCCAATTTATCTGGCCATCAATGAAG
1 CTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
** * *
7898335 CTTTAAGCTTAGTTTATTTGGCC-TCAAATGAAG
1 CTTTAAGCCCAGTTTATCTGGCCAT-TAATGAAG
* *
7898368 TTTTAAGCCCAGTTTATCTGGCCATCAATG-A-
1 CTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
** *
7898399 CATTTAAGCCCAGTTTATCTAACCATCAAT-AAG
1 C-TTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* ** * *
7898432 TTTTTAAAACCAGTTTATTTGGCC-TCAAATGAAG
1 -CTTTAAGCCCAGTTTATCTGGCCAT-TAATGAAG
* * * *
7898466 ATCTAAGCCCAGTTTATCTGGCTATCAATGATA-
1 CTTTAAGCCCAGTTTATCTGGCCATTAATGA-AG
*
7898499 -TTTAAGCCCAGTTTATCTGGCC-TTAAATGAGG
1 CTTTAAGCCCAGTTTATCTGGCCATT-AATGAAG
* * * * ** *
7898531 TTTTAAGCCTAATTTAGCTAACC-TTCAAT-AAA
1 CTTTAAGCCCAGTTTATCTGGCCATT-AATGAAG
* * * *
7898563 ATTTAAGCCTAGTTTATCTGGCC-TCAAATGAGG
1 CTTTAAGCCCAGTTTATCTGGCCAT-TAATGAAG
* * * *
7898596 TTTTAAGCCCAATTTAACTGGCC-TTCAAT-AAA
1 CTTTAAGCCCAGTTTATCTGGCCATT-AATGAAG
* *
7898628 ATTTAAGTCCAGTTTAT
1 CTTTAAGCCCAGTTTAT
7898645 TTGATCCCAA
Statistics
Matches: 482, Mismatches: 93, Indels: 63
0.76 0.15 0.10
Matches are distributed among these distances:
31 3 0.01
32 145 0.30
33 296 0.61
34 35 0.07
35 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (33 bp):
CTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
Found at i:7898251 original size:132 final size:131
Alignment explanation
Indices: 7898007--7898644 Score: 508
Period size: 131 Copynumber: 4.9 Consensus size: 131
7897997 AAAAAAAAAC
* * * *
7898007 TTTAAGCCCAGTTTATCTAGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
1 TTTAAACCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAATTTATCTGGCCTCAAATAAAG
* * * *
7898072 ATTTAAGCCTAGTTTATCTAGCCATCAATGACATTTAAGCCCGGTTTATCT-AGCCAT-AAAT-A
66 ATTTAAACCCAGTTTATCTAGCCATCAATAACATTTAAGCCCAGTTTATCTGA-CC-TCAAATGA
*
7898134 AGTT
129 AG-A
*
7898138 TTTAAAACCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAATTTATCTGGCCTTAAATAAA
1 TTT-AAACCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAATTTATCTGGCCTCAAATAAA
* *
7898203 GATTTAAACCCAGTTTATCTAGCCATTAATAA-ATCTTTAAG-CCAGTTTATCTGATCTCAAATG
65 GATTTAAACCCAGTTTATCTAGCCATCAATAACA--TTTAAGCCCAGTTTATCTGACCTCAAATG
7898266 AAGA
128 AAGA
* *
7898270 TTTAAGCCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAATTTATCTGGCCATC-AATGAA
1 TTTAAACCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAATTTATCTGGCC-TCAAATAAA
* * ** * * ** *
7898334 GCTTTAAGCTTAGTTTATTTGGCC-TCAAATGAAGTTTTAAGCCCAGTTTATCTGGCCATC-AAT
65 GATTTAAACCCAGTTTATCTAGCCATC-AAT-AACATTTAAGCCCAGTTTATCTGACC-TCAAAT
*
7898397 G-ACA
127 GAAGA
* ** * * ** * * *
7898401 TTTAAGCCCAGTTTATCTAACCATCAAT-AAGTTTTTAAAACCAGTTTATTTGGCCTCAAATGAA
1 TTTAAACCCAGTTTATCTGGCCATTAATGAAG-CTTTAAGCCCAATTTATCTGGCCTCAAATAAA
* * * * * * * * *
7898465 GATCTAAGCCCAGTTTATCTGGCTATCAATGATATTTAAGCCCAGTTTATCTGGCCTTAAATGAG
65 GATTTAAACCCAGTTTATCTAGCCATCAATAACATTTAAGCCCAGTTTATCTGACCTCAAATGAA
*
7898530 GT
130 GA
* * * * ** ** * * * *
7898532 TTTAAGCCTAATTTAGCTAACC-TTCAAT-AAAATTTAAGCCTAGTTTATCTGGCCTCAAATGAG
1 TTTAAACCCAGTTTATCTGGCCATT-AATGAAGCTTTAAGCCCAATTTATCTGGCCTCAAATAAA
* * * * * * * *
7898595 GTTTTAAGCCCAATTTAACTGGCCTTCAATAAAATTTAAGTCCAGTTTAT
65 GATTTAAACCCAGTTTATCTAGCCATCAATAACATTTAAGCCCAGTTTAT
7898645 TTGATCCCAA
Statistics
Matches: 422, Mismatches: 67, Indels: 37
0.80 0.13 0.07
Matches are distributed among these distances:
129 1 0.00
130 101 0.24
131 184 0.44
132 124 0.29
133 12 0.03
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (131 bp):
TTTAAACCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAATTTATCTGGCCTCAAATAAAG
ATTTAAACCCAGTTTATCTAGCCATCAATAACATTTAAGCCCAGTTTATCTGACCTCAAATGAAG
A
Found at i:7898285 original size:98 final size:97
Alignment explanation
Indices: 7898007--7898644 Score: 531
Period size: 98 Copynumber: 6.5 Consensus size: 97
7897997 AAAAAAAAAC
* * *
7898007 TTTAAGCCCAGTTTATCTAGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
1 TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTTAAG-CCAGTTTATCTGACCTCAAATGAAG
* * * * *
7898072 ATTTAAGCCTAGTTTATCTAGCCATCAATGACA
65 ATTTAAGCCCAGTTTATCTGGCCTTCAATAAGA
* * * * * * *
7898105 TTTAAGCCCGGTTTATCTAGCCATAAATAAGTTTTTAAAACCCAGTTTATCTGGCCAT-TAATGA
1 TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTT--AAGCCAGTTTATCTGACC-TCAAATGA
* * *
7898169 AGCTTTAAGCCCAATTTATCTGGCCTTAAATAAAGA
63 AGATTTAAGCCCAGTTTATCTGGCCTTCAAT-AAGA
* *
7898205 TTTAAACCCAGTTTATCTAGCCATTAATAAATCTTTAAGCCAGTTTATCTGATCTCAAATGAAGA
1 TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTTAAGCCAGTTTATCTGACCTCAAATGAAGA
*
7898270 TTTAAGCCCAGTTTATCTGGCCATT-AATGAAGC
66 TTTAAGCCCAGTTTATCTGGCC-TTCAAT-AAGA
* * * * * * * *
7898303 TTTAAGCCCAATTTATCTGGCCATCAATGAAGCTTTAAGCTTAGTTTATTTGGCCTCAAATGAAG
1 TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTTAAGC-CAGTTTATCTGACCTCAAATGAAG
* * * *
7898368 TTTTAAGCCCAGTTTATCTGGCCATCAATGACA
65 ATTTAAGCCCAGTTTATCTGGCCTTCAATAAGA
* * * * * * *
7898401 TTTAAGCCCAGTTTATCTAACCATCAATAAGTTTTTAAAACCAGTTTATTTGGCCTCAAATGAAG
1 TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTT-AAGCCAGTTTATCTGACCTCAAATGAAG
* * *
7898466 ATCTAAGCCCAGTTTATCTGG-CTATCAATGATA
65 ATTTAAGCCCAGTTTATCTGGCCT-TCAATAAGA
* ** * * *
7898499 TTTAAGCCCAGTTTATCTGGCC-TTAAATGAGGT-TTTAAGCCTAATTTAGCTAACCTTC-AAT-
1 TTTAAGCCCAGTTTATCTAGCCATT-AAT-AAATCTTTAAGCC-AGTTTATCTGACC-TCAAATG
* * * *
7898560 AAAATTTAAGCCTAGTTTATCTGGCC-TCAAATGAGGT
62 AAGATTTAAGCCCAGTTTATCTGGCCTTC-AAT-AAGA
* * * *
7898597 TTTAAGCCCAATTTAACTGGCC-TTCAATAAA-ATTTAAGTCCAGTTTAT
1 TTTAAGCCCAGTTTATCTAGCCATT-AATAAATCTTTAAG-CCAGTTTAT
7898645 TTGATCCCAA
Statistics
Matches: 440, Mismatches: 81, Indels: 39
0.79 0.14 0.07
Matches are distributed among these distances:
96 2 0.00
97 43 0.10
98 259 0.59
99 100 0.23
100 36 0.08
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (97 bp):
TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTTAAGCCAGTTTATCTGACCTCAAATGAAGA
TTTAAGCCCAGTTTATCTGGCCTTCAATAAGA
Found at i:7898287 original size:65 final size:66
Alignment explanation
Indices: 7898007--7898644 Score: 550
Period size: 65 Copynumber: 9.7 Consensus size: 66
7897997 AAAAAAAAAC
* *
7898007 TTTAAGCCCAGTTTATCTAGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
1 TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
7898072 A
66 A
* * * * *
7898073 TTTAAGCCTAGTTTATCTAGCCATCAAT-GA-CATTTAAGCCCGGTTTATCTAGCCAT-AAAT-A
1 TTTAAGCCCAGTTTATCTAGCCATTAATAAATC-TTTAAGCCCAGTTTATCTGGCC-TCAAATGA
*
7898134 AGTT
64 AG-A
* * * * * * *
7898138 TTTAAAACCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAATTTATCTGGCCTTAAATAAA
1 TTT-AAGCCCAGTTTATCTAGCCATTAATAAATCTTTAAGCCCAGTTTATCTGGCCTCAAATGAA
7898203 GA
65 GA
* **
7898205 TTTAAACCCAGTTTATCTAGCCATTAATAAATCTTTAAG-CCAGTTTATCTGATCTCAAATGAAG
1 TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
7898269 A
66 A
* * * *
7898270 TTTAAGCCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAATTTATCTGGCCATC-AATGAA
1 TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTTAAGCCCAGTTTATCTGGCC-TCAAATGAA
*
7898334 GC
65 GA
** * * * *
7898336 TTTAAGCTTAGTTTATTTGGCC-TCAAATGAAGT-TTTAAGCCCAGTTTATCTGGCCATC-AATG
1 TTTAAGCCCAGTTTATCTAGCCAT-TAAT-AAATCTTTAAGCCCAGTTTATCTGGCC-TCAAATG
*
7898398 -ACA
63 AAGA
* * * * ** *
7898401 TTTAAGCCCAGTTTATCTAACCATCAATAAGTTTTTAAAACCAGTTTATTTGGCCTCAAATGAAG
1 TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
7898466 A
66 A
* * * * * * * *
7898467 TCTAAGCCCAGTTTATCTGGCTATCAAT-GATATTTAAGCCCAGTTTATCTGGCCTTAAATGAGG
1 TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
*
7898531 T
66 A
* * * * * * *
7898532 TTTAAGCCTAATTTAGCTAACC-TTCAATAAA-ATTTAAGCCTAGTTTATCTGGCCTCAAATGAG
1 TTTAAGCCCAGTTTATCTAGCCATT-AATAAATCTTTAAGCCCAGTTTATCTGGCCTCAAATGAA
*
7898595 GT
65 GA
* * * * *
7898597 TTTAAGCCCAATTTAACTGGCC-TTCAATAAA-ATTTAAGTCCAGTTTAT
1 TTTAAGCCCAGTTTATCTAGCCATT-AATAAATCTTTAAGCCCAGTTTAT
7898645 TTGATCCCAA
Statistics
Matches: 473, Mismatches: 81, Indels: 37
0.80 0.14 0.06
Matches are distributed among these distances:
64 11 0.02
65 249 0.53
66 179 0.38
67 30 0.06
68 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (66 bp):
TTTAAGCCCAGTTTATCTAGCCATTAATAAATCTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
A
Found at i:7899494 original size:110 final size:110
Alignment explanation
Indices: 7899292--7899659 Score: 425
Period size: 110 Copynumber: 3.3 Consensus size: 110
7899282 AAGATTTTGA
* * * * * ** *
7899292 GATT-TGTAAGACCTCTAGGCATAATCTCTAAGACTTTCGGGAATAAATTCGATTCACGGTGTTA
1 GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCAAGCATAAATTCGATTCACGGTGTTA
* *
7899356 TCTCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCTAATC
66 TCTCGATCGATTCTTTATCTTTTAACTTGTGGTGTTATCCCAATC
* * * * *
7899401 GATTTTGTAAGATCTTCAGGCATGATTTCTAAGACCTCCAAGCATAATTTCGATTCGCGGTGTTA
1 GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCAAGCATAAATTCGATTCACGGTGTTA
* * *
7899466 TCACGATCGATTCTTTATATTTTAACTTGTGGTGTTATCCCAGTC
66 TCTCGATCGATTCTTTATCTTTTAACTTGTGGTGTTATCCCAATC
* * * * * * *
7899511 GATTCTGTAAGACCTCCGGGTATGATTTTTAAGATCTTCAAGCATAAATTCGATTCACGATATTA
1 GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCAAGCATAAATTCGATTCACGGTGTTA
* * * *
7899576 TCTTGATCGATTCTTTATCTTTTTACTTGTGGTGTTATCTCAGTC
66 TCTCGATCGATTCTTTATCTTTTAACTTGTGGTGTTATCCCAATC
* *
7899621 GATTCTATAAGACCTCC-GTGCATGATTTTGTAAGACCTC
1 GATTCTGTAAGACCTCCAG-GCATGA-TTTCTAAGACCTC
7899660 TGGGCATGAT
Statistics
Matches: 217, Mismatches: 39, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
109 5 0.02
110 202 0.93
111 10 0.05
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.40
Consensus pattern (110 bp):
GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCAAGCATAAATTCGATTCACGGTGTTA
TCTCGATCGATTCTTTATCTTTTAACTTGTGGTGTTATCCCAATC
Found at i:7899679 original size:22 final size:22
Alignment explanation
Indices: 7899628--7899694 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
7899618 GTCGATTCTA
* * *
7899628 TAAGACCTCCGTGCATGATTTTG
1 TAAGACCTCTGGGCATGA-TTTC
7899651 TAAGACCTCTGGGCATGATTTC
1 TAAGACCTCTGGGCATGATTTC
* *
7899673 TAAGACCTTTGGGCATAATTTC
1 TAAGACCTCTGGGCATGATTTC
7899695 GATTCGCGGT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
22 23 0.59
23 16 0.41
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (22 bp):
TAAGACCTCTGGGCATGATTTC
Found at i:7899759 original size:133 final size:133
Alignment explanation
Indices: 7899511--7899798 Score: 364
Period size: 133 Copynumber: 2.2 Consensus size: 133
7899501 TATCCCAGTC
* * * *
7899511 GATTCTGTAAGACCTCCGGGTATGATTTTTAAGATCTTCAAGCATAAATTCGATTCACGATATTA
1 GATTTTGTAAGACCTCCGGGCATGATTTCTAAGACCTTCAAGCATAAATTCGATTCACGATATTA
* * * * *
7899576 TCTTGATCGATTCTTTATCTTTTTACTTGTGGTGTTATCTCAGTCGATTCTATAAGACCTCCGTG
66 TCTTGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAGTCAATTCTATAAGACCTCAGGG
7899641 CAT
131 CAT
* *** * * * *
7899644 GATTTTGTAAGACCTCTGGGCATGATTTCTAAGACCTTTGGGCATAATTTCGATTCGCGGTGTTA
1 GATTTTGTAAGACCTCCGGGCATGATTTCTAAGACCTTCAAGCATAAATTCGATTCACGATATTA
* *
7899709 T-TTCGATCGATTCTTTATCTTTTGACTTGTGTTGTTATCCCAGTCAATTCTGTAAGACCTCAGG
66 TCTT-GATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAGTCAATTCTATAAGACCTCAGG
7899773 GCAT
130 GCAT
* *
7899777 GATTTT-TTAGACCTCCAGGCAT
1 GATTTTGTAAGACCTCCGGGCAT
7899799 AAATTCAATT
Statistics
Matches: 132, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
132 15 0.11
133 117 0.89
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (133 bp):
GATTTTGTAAGACCTCCGGGCATGATTTCTAAGACCTTCAAGCATAAATTCGATTCACGATATTA
TCTTGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAGTCAATTCTATAAGACCTCAGGG
CAT
Found at i:7899833 original size:243 final size:243
Alignment explanation
Indices: 7899401--7899891 Score: 669
Period size: 243 Copynumber: 2.0 Consensus size: 243
7899391 TATCCTAATC
*
7899401 GATTTTGTAAGATCTTCAGGCATGATTTCTAAGACCTCCAAGCATAATTTCGATTCGCGGTGTTA
1 GATTTTGTAAGACCTTCAGGCATGATTTCTAAGACCTCCAAGCATAATTTCGATTCGCGGTGTTA
* *
7899466 TCACGATCGATTCTTTATATTTTAACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTCCGGG
66 TCACGATCGATTCTTTATATTTTAACTTGTGGTGTTATCCCAGTCAATTCTGTAAGACCTCAGGG
* * * * **
7899531 TATGATTTTTAAGATCTTCAAGCATAAATTCGATTCACGATATTATCTTGATCGATTCTTTATCT
131 CATGATTTTTAAGACCTCCAAGCATAAATTCAATTCACGATATTATCCCGATCGATTCTTTATCT
* * * *
7899596 TTTTACTTGTGGTGTTATCTCAGTCGATTCTATAAGACCTCCGTGCAT
196 TTTGACTTGTGGTGTTATCCCAATCGATTCTATAAGACCTCCGGGCAT
* ****
7899644 GATTTTGTAAGACC-TCTGGGCATGATTTCTAAGACCTTTGGGCATAATTTCGATTCGCGGTGTT
1 GATTTTGTAAGACCTTC-AGGCATGATTTCTAAGACCTCCAAGCATAATTTCGATTCGCGGTGTT
** * * *
7899708 ATTTCGATCGATTCTTTATCTTTTGACTTGTGTTGTTATCCCAGTCAATTCTGTAAGACCTCAGG
65 ATCACGATCGATTCTTTATATTTTAACTTGTGGTGTTATCCCAGTCAATTCTGTAAGACCTCAGG
* * *** * *
7899773 GCATGATTTTTTAGACCTCCAGGCATAAATTCAATTTGTGATGTTATCCCGATTGATTCTTTATC
130 GCATGATTTTTAAGACCTCCAAGCATAAATTCAATTCACGATATTATCCCGATCGATTCTTTATC
* * *
7899838 TTTTGACTTGTGGTGTTTTCCCAATCGATTCTGTAAGACCTCTGGGCAT
195 TTTTGACTTGTGGTGTTATCCCAATCGATTCTATAAGACCTCCGGGCAT
7899887 GATTT
1 GATTT
7899892 CTAAGACGTC
Statistics
Matches: 214, Mismatches: 33, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
242 2 0.01
243 212 0.99
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (243 bp):
GATTTTGTAAGACCTTCAGGCATGATTTCTAAGACCTCCAAGCATAATTTCGATTCGCGGTGTTA
TCACGATCGATTCTTTATATTTTAACTTGTGGTGTTATCCCAGTCAATTCTGTAAGACCTCAGGG
CATGATTTTTAAGACCTCCAAGCATAAATTCAATTCACGATATTATCCCGATCGATTCTTTATCT
TTTGACTTGTGGTGTTATCCCAATCGATTCTATAAGACCTCCGGGCAT
Found at i:7899842 original size:110 final size:109
Alignment explanation
Indices: 7899644--7900094 Score: 537
Period size: 110 Copynumber: 4.1 Consensus size: 109
7899634 CTCCGTGCAT
* ** * *
7899644 GATTTTGTAAGACCTCTGGGCATGATTTCTAAGACCTTTGGGCATAATTTCGATTCGCGGTGTTA
1 GATTCTGTAAGACCTCTGGGCATGATTTCTAAGACC-TCCGGCATAATTTCGATTCACGATGTTA
** *
7899709 TTTCGATCGATTCTTTATCTTTTGACTTGTGTTGTTATCCCAGTC
65 TCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAGTC
* * * * * * ***
7899754 AATTCTGTAAGACCTCAGGGCATGATTTTTTAGACCTCCAGGCATAAATTCAATTTGTGATGTTA
1 GATTCTGTAAGACCTCTGGGCATGATTTCTAAGACCTCC-GGCATAATTTCGATTCACGATGTTA
* * *
7899819 TCCCGATTGATTCTTTATCTTTTGACTTGTGGTGTTTTCCCAATC
65 TCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAGTC
* *
7899864 GATTCTGTAAGACCTCTGGGCATGATTTCTAAGACGTCCGGACATAATTTCGATTCACGATGTTG
1 GATTCTGTAAGACCTCTGGGCATGATTTCTAAGACCTCCGG-CATAATTTCGATTCACGATGTTA
* * * *
7899929 TCCCAATCAATTCTTTAT-TTCTGACTTGTGGTGTTATCTCAGTC
65 TCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAGTC
* *
7899973 GATTCTGTAAGACCT-TCGGGCATGATTTCTAAGACCTCCGAGCATAATTTTGATTCACGGTGTT
1 GATTCTGTAAGACCTCT-GGGCATGATTTCTAAGACCTCCG-GCATAATTTCGATTCACGATGTT
* * * ***
7900037 ATCCCGATTGATTCTTTATTTTTTAACTTAAAGTGTTATCCCAGTC
64 ATCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAGTC
7900083 GATTCTGTAAGA
1 GATTCTGTAAGA
7900095 TCTCCGGGTA
Statistics
Matches: 287, Mismatches: 49, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
108 1 0.00
109 97 0.34
110 189 0.66
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (109 bp):
GATTCTGTAAGACCTCTGGGCATGATTTCTAAGACCTCCGGCATAATTTCGATTCACGATGTTAT
CCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAGTC
Found at i:7899944 original size:353 final size:351
Alignment explanation
Indices: 7899292--7900010 Score: 958
Period size: 353 Copynumber: 2.0 Consensus size: 351
7899282 AAGATTTTGA
7899292 GATTTGTAAGACCTCTAGGCATAATCTCTAAGACTTTCGGGAATAAATTCGATTCACGGTGTTAT
1 GATTTGTAAGACCTCTAGGCATAATCTCTAAGACTTTCGGGAATAAATTCGATTCACGGTGTTAT
* * * *
7899357 CTCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCTAATCGATTTTGTAAGATCTTCAGGC
66 CTCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAATCAATTCTGTAAGATCCTCAGGC
* * *
7899422 ATGATTTCTAAGACCTCCAAGCATAATTTCGATTCGCGGTGTTATCACGATCGATTCTTTATATT
131 ATGATTTCTAAGACCTCCAAGCATAAATTCAATTCGCGATGTTATCACGATCGATTCTTTATATT
* * * *
7899487 TTAACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTCCGGGTATGATTTTTAAGATCTTCAA
196 TTAACTTGTGGTGTTATCCCAATCGATTCTGTAAGACCTCCGGGCATGATTTCTAAGATCGTCAA
*** * * *
7899552 GCATAAATTCGATTCACGATATTATCTTGATCGATTCTTTATCTTTTTACTTGTGGTGTTATCTC
261 GCATAAATTCGATTCACGATATTATCCCAATCAATTCTTTAT-TTCTGACTTGTGGTGTTATCTC
*
7899617 AGTCGATTCTATAAGACCTCCGTGCAT
325 AGTCGATTCTATAAGACCTCCGGGCAT
* * * * * *
7899644 GATTTTGTAAGACCTCTGGGCATGATTTCTAAGACCTTT-GGGCATAATTTCGATTCGCGGTGTT
1 GA-TTTGTAAGACCTCTAGGCATAATCTCTAAGA-CTTTCGGGAATAAATTCGATTCACGGTGTT
* * *
7899708 ATTTCGATCGATTCTTTATCTTTTGACTTGTGTTGTTATCCCAGTCAATTCTGTAAGA-CCTCAG
64 ATCTCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAATCAATTCTGTAAGATCCTCA-
* * * * * * *
7899772 GGCATGATTTTTTAGACCTCCAGGCATAAATTCAATTTGTGATGTTATCCCGATTGATTCTTTAT
128 GGCATGATTTCTAAGACCTCCAAGCATAAATTCAATTCGCGATGTTATCACGATCGATTCTTTAT
* * * *
7899837 CTTTTGACTTGTGGTGTTTTCCCAATCGATTCTGTAAGACCTCTGGGCATGATTTCTAAGA-CGT
193 ATTTTAACTTGTGGTGTTATCCCAATCGATTCTGTAAGACCTCCGGGCATGATTTCTAAGATCGT
** * * *
7899901 CCGGACATAATTTCGATTCACGATGTTGTCCCAATCAATTCTTTATTTCTGACTTGTGGTGTTAT
258 CAAG-CATAAATTCGATTCACGATATTATCCCAATCAATTCTTTATTTCTGACTTGTGGTGTTAT
* *
7899966 CTCAGTCGATTCTGTAAGACCTTCGGGCAT
322 CTCAGTCGATTCTATAAGACCTCCGGGCAT
*
7899996 GATTTCTAAGACCTC
1 GATTTGTAAGACCTC
7900011 CGAGCATAAT
Statistics
Matches: 317, Mismatches: 46, Indels: 9
0.85 0.12 0.02
Matches are distributed among these distances:
351 12 0.04
352 56 0.18
353 245 0.77
354 4 0.01
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (351 bp):
GATTTGTAAGACCTCTAGGCATAATCTCTAAGACTTTCGGGAATAAATTCGATTCACGGTGTTAT
CTCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCCCAATCAATTCTGTAAGATCCTCAGGC
ATGATTTCTAAGACCTCCAAGCATAAATTCAATTCGCGATGTTATCACGATCGATTCTTTATATT
TTAACTTGTGGTGTTATCCCAATCGATTCTGTAAGACCTCCGGGCATGATTTCTAAGATCGTCAA
GCATAAATTCGATTCACGATATTATCCCAATCAATTCTTTATTTCTGACTTGTGGTGTTATCTCA
GTCGATTCTATAAGACCTCCGGGCAT
Found at i:7900017 original size:22 final size:22
Alignment explanation
Indices: 7899980--7900022 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7899970 GTCGATTCTG
* * *
7899980 TAAGACCTTCGGGCATGATTTC
1 TAAGACCTCCGAGCATAATTTC
7900002 TAAGACCTCCGAGCATAATTT
1 TAAGACCTCCGAGCATAATTT
7900023 TGATTCACGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (22 bp):
TAAGACCTCCGAGCATAATTTC
Found at i:7900039 original size:219 final size:220
Alignment explanation
Indices: 7899644--7900094 Score: 575
Period size: 219 Copynumber: 2.1 Consensus size: 220
7899634 CTCCGTGCAT
* ** * * *
7899644 GATTTTGTAAGACCTCTGGGCATGATTTCTAAGACCTTTGGGCATAATTTCGATTCGCGGTGTTA
1 GATTCTGTAAGACCTCTGGGCATGATTTCTAAGACCTCCGGACATAATTTCGATTCACGATGTTA
** * * * *
7899709 TTTCGATCGATTCTTTATCTTTTGACTTGTGTTGTTATCCCAGTCAATTCTGTAAGACCTCAGGG
66 TCCCAATCAATTCTTTATCTTCTGACTTGTGGTGTTATCCCAGTCAATTCTGTAAGACCTCAGGG
* * ***
7899774 CATGATTTTTTAGACCTCCAGGCATAAATTCAATTTGTGATGTTATCCCGATTGATTCTTTATCT
131 CATGATTTCTAAGACCTCCAGGCATAAATTCAATTCACGATGTTATCCCGATTGATTCTTTATCT
* *** *
7899839 TTTGACTTGTGGTGTTTTCCCAATC
196 TTTAACTTAAAGTGTTATCCCAATC
* *
7899864 GATTCTGTAAGACCTCTGGGCATGATTTCTAAGACGTCCGGACATAATTTCGATTCACGATGTTG
1 GATTCTGTAAGACCTCTGGGCATGATTTCTAAGACCTCCGGACATAATTTCGATTCACGATGTTA
* *
7899929 TCCCAATCAATTCTTTAT-TTCTGACTTGTGGTGTTATCTCAGTCGATTCTGTAAGACCTTC-GG
66 TCCCAATCAATTCTTTATCTTCTGACTTGTGGTGTTATCCCAGTCAATTCTGTAAGACC-TCAGG
* ** *
7899992 GCATGATTTCTAAGACCTCC-GAGCATAATTTTGATTCACGGTGTTATCCCGATTGATTCTTTAT
130 GCATGATTTCTAAGACCTCCAG-GCATAAATTCAATTCACGATGTTATCCCGATTGATTCTTTAT
* *
7900056 TTTTTAACTTAAAGTGTTATCCCAGTC
194 CTTTTAACTTAAAGTGTTATCCCAATC
7900083 GATTCTGTAAGA
1 GATTCTGTAAGA
7900095 TCTCCGGGTA
Statistics
Matches: 197, Mismatches: 32, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
218 1 0.01
219 123 0.62
220 73 0.37
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (220 bp):
GATTCTGTAAGACCTCTGGGCATGATTTCTAAGACCTCCGGACATAATTTCGATTCACGATGTTA
TCCCAATCAATTCTTTATCTTCTGACTTGTGGTGTTATCCCAGTCAATTCTGTAAGACCTCAGGG
CATGATTTCTAAGACCTCCAGGCATAAATTCAATTCACGATGTTATCCCGATTGATTCTTTATCT
TTTAACTTAAAGTGTTATCCCAATC
Found at i:7900166 original size:88 final size:88
Alignment explanation
Indices: 7900002--7900167 Score: 215
Period size: 88 Copynumber: 1.9 Consensus size: 88
7899992 GCATGATTTC
* * * *
7900002 TAAGACCTCCGAGCATAATTTTGATTCACGGTGTTATCCCGATTGATTCTTTATTTTTTAACTTA
1 TAAGACCTCCGAGCATAAATTTGATTCACGATGTTATCCCGATCGATTCATTATTTTTTAACTTA
*
7900067 AAGTGTTATCCCAGTCGATTCTG
66 AAGTGTCATCCCAGTCGATTCTG
* * * * * *
7900090 TAAGATCTCCGGGTATAAATTTGATTCGCGATGTTATCTCGATCGATTCATTATTTTTTGACTTA
1 TAAGACCTCCGAGCATAAATTTGATTCACGATGTTATCCCGATCGATTCATTATTTTTTAACTTA
**
7900155 CGGTGTCATCCCA
66 AAGTGTCATCCCA
7900168 ATCGTTTTGT
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
88 65 1.00
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.40
Consensus pattern (88 bp):
TAAGACCTCCGAGCATAAATTTGATTCACGATGTTATCCCGATCGATTCATTATTTTTTAACTTA
AAGTGTCATCCCAGTCGATTCTG
Found at i:7900344 original size:12 final size:12
Alignment explanation
Indices: 7900324--7900357 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7900314 TCTACTATTT
*
7900324 TAATTTTAATAA
1 TAATATTAATAA
7900336 TAATATTAATAA
1 TAATATTAATAA
*
7900348 TAATAATAAT
1 TAATATTAAT
7900358 TTAAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATATTAATAA
Found at i:7901443 original size:12 final size:12
Alignment explanation
Indices: 7901425--7901460 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
7901415 CAGGTAAGAA
7901425 AAATTTTTTTTT
1 AAATTTTTTTTT
* *
7901437 TAATTTTTTGTT
1 AAATTTTTTTTT
7901449 AAATTTTTTTTT
1 AAATTTTTTTTT
7901461 GTTATTTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (12 bp):
AAATTTTTTTTT
Found at i:7901909 original size:33 final size:33
Alignment explanation
Indices: 7901872--7901973 Score: 127
Period size: 33 Copynumber: 3.1 Consensus size: 33
7901862 GTTTTTAAAA
*
7901872 CCCTTAAAAATTCAAAATCTCTTAAATCCAAAC
1 CCCTTAAAAATTCAAAATCTCTAAAATCCAAAC
*
7901905 CCCTTAAAAATTCAAAATCCCTAAAATCCAAAC
1 CCCTTAAAAATTCAAAATCTCTAAAATCCAAAC
* * *
7901938 CTCC-T-AAAATCCGAAACCTCTAAAATCCAAAAC
1 C-CCTTAAAAATTCAAAATCTCTAAAATCC-AAAC
7901971 CCC
1 CCC
7901974 CCCAAAATCC
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
32 21 0.34
33 38 0.62
34 2 0.03
ACGTcount: A:0.45, C:0.32, G:0.01, T:0.22
Consensus pattern (33 bp):
CCCTTAAAAATTCAAAATCTCTAAAATCCAAAC
Found at i:7901929 original size:17 final size:17
Alignment explanation
Indices: 7901876--7901930 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
7901866 TTAAAACCCT
*
7901876 TAAAAATTCAAAATCTC
1 TAAAAATTCAAAATCCC
* * *
7901893 T-TAAA-TCCAAACCCC
1 TAAAAATTCAAAATCCC
7901908 TTAAAAATTCAAAATCCC
1 -TAAAAATTCAAAATCCC
7901926 TAAAA
1 TAAAA
7901931 TCCAAACCTC
Statistics
Matches: 28, Mismatches: 7, Indels: 6
0.68 0.17 0.15
Matches are distributed among these distances:
15 7 0.25
16 4 0.14
17 9 0.32
18 8 0.29
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (17 bp):
TAAAAATTCAAAATCCC
Found at i:7901961 original size:32 final size:34
Alignment explanation
Indices: 7901872--7901990 Score: 122
Period size: 33 Copynumber: 3.6 Consensus size: 34
7901862 GTTTTTAAAA
* *
7901872 CCCTTAAAAATTCAAAAT-CTCTTAAATCCAAAC
1 CCCTTAAAAATCCAAAATCCTCTAAAATCCAAAC
*
7901905 CCCTTAAAAATTCAAAATCC-CTAAAATCCAAAC
1 CCCTTAAAAATCCAAAATCCTCTAAAATCCAAAC
*
7901938 CTCC-T-AAAATCCGAAA-CCTCTAAAATCCAAAAC
1 C-CCTTAAAAATCCAAAATCCTCTAAAATCC-AAAC
***
7901971 CCCCCCAAAATCCAAAATCC
1 CCCTTAAAAATCCAAAATCC
7901991 CAAACTTTTA
Statistics
Matches: 74, Mismatches: 5, Indels: 12
0.81 0.05 0.13
Matches are distributed among these distances:
31 2 0.03
32 20 0.27
33 37 0.50
34 13 0.18
35 2 0.03
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (34 bp):
CCCTTAAAAATCCAAAATCCTCTAAAATCCAAAC
Found at i:7902027 original size:15 final size:15
Alignment explanation
Indices: 7902007--7902050 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7901997 TTTAAACTCT
*
7902007 TAAATCTAAACCCCC
1 TAAATCCAAACCCCC
**
7902022 TAAATCCAAAATCCC
1 TAAATCCAAACCCCC
7902037 TAAAATCCAAACCC
1 T-AAATCCAAACCC
7902051 TTAAATCAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (15 bp):
TAAATCCAAACCCCC
Found at i:7902044 original size:16 final size:16
Alignment explanation
Indices: 7901895--7902047 Score: 91
Period size: 16 Copynumber: 9.6 Consensus size: 16
7901885 AAAATCTCTT
7901895 AAATCC-AAACCCCTTAA
1 AAATCCAAAACCCC-T-A
* *
7901912 AAATTCAAAATCCCTA
1 AAATCCAAAACCCCTA
7901928 AAATCC-AAACCTCCTA
1 AAATCCAAAACC-CCTA
* *
7901944 AAATCCGAAACCTCTA
1 AAATCCAAAACCCCTA
*
7901960 AAATCCAAAACCCCCCCA
1 AAATCCAAAA--CCCCTA
*
7901978 AAATCCAAAATCCC-A
1 AAATCCAAAACCCCTA
* *** * *
7901993 AACTTTTAAA-CTCTT
1 AAATCCAAAACCCCTA
* *
7902008 AAATCTAAACCCCCT-
1 AAATCCAAAACCCCTA
*
7902023 AAATCCAAAATCCCTA
1 AAATCCAAAACCCCTA
7902039 AAATCCAAA
1 AAATCCAAA
7902048 CCCTTAAATC
Statistics
Matches: 105, Mismatches: 23, Indels: 17
0.72 0.16 0.12
Matches are distributed among these distances:
14 2 0.02
15 29 0.28
16 43 0.41
17 11 0.10
18 20 0.19
ACGTcount: A:0.46, C:0.33, G:0.01, T:0.20
Consensus pattern (16 bp):
AAATCCAAAACCCCTA
Found at i:7902056 original size:14 final size:14
Alignment explanation
Indices: 7902000--7902062 Score: 54
Period size: 14 Copynumber: 4.3 Consensus size: 14
7901990 CCAAACTTTT
* *
7902000 AAACTCTTAAATCT
1 AAACCCTTAAATCC
*
7902014 AAACCCCCTAAATCC
1 AAA-CCCTTAAATCC
*
7902029 AAAATCCCTAAAATCC
1 -AAA-CCCTTAAATCC
*
7902045 AAACCCTTAAATCA
1 AAACCCTTAAATCC
7902059 AAAC
1 AAAC
7902063 TCCAAACCTC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
14 16 0.41
15 11 0.28
16 12 0.31
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.21
Consensus pattern (14 bp):
AAACCCTTAAATCC
Found at i:7905766 original size:20 final size:20
Alignment explanation
Indices: 7905741--7905799 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
7905731 GGTCAAATTT
7905741 ATGGATTGTACAAATGATTC
1 ATGGATTGTACAAATGATTC
*
7905761 ATGGATTGTACAAATAATTC
1 ATGGATTGTACAAATGATTC
7905781 ATGGATTGTACAAATGATT
1 ATGGATTGTACAAATGATT
7905800 TATTATCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.36
Consensus pattern (20 bp):
ATGGATTGTACAAATGATTC
Found at i:7918932 original size:61 final size:65
Alignment explanation
Indices: 7918801--7918944 Score: 181
Period size: 61 Copynumber: 2.3 Consensus size: 65
7918791 TTTTCTGGCC
*
7918801 AAAAATGATTTCAATAATCCATTTAAAAAATTTATGGAGAGAGAATATTGAAGGCGTTTTCGACT
1 AAAAATGCTTTCAATAATCCATTTAAAAAATTTATGGAGAGAGAATATTGAAGGCGTTTTCGACT
* * * *
7918866 AAAAATGCTTTCAATAATCC-TTTGAAAAATTT-T-G-GAGAGATTATTGAAGGTGTTTTTGA-T
1 AAAAATGCTTTCAATAATCCATTTAAAAAATTTATGGAGAGAGAATATTGAAGGCGTTTTCGACT
* *
7918926 CGAAAATGCCTTCAATAAT
1 -AAAAATGCTTTCAATAAT
7918945 ATACGCGTTC
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
60 1 0.01
61 38 0.54
62 1 0.01
63 1 0.01
64 11 0.15
65 19 0.27
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.35
Consensus pattern (65 bp):
AAAAATGCTTTCAATAATCCATTTAAAAAATTTATGGAGAGAGAATATTGAAGGCGTTTTCGACT
Found at i:7919230 original size:35 final size:35
Alignment explanation
Indices: 7919184--7919255 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
7919174 ATTATATATG
* *
7919184 TGAAGTCAATTGTAGGTTTATACCTAAAAAAGATT
1 TGAAGTCAATTGTAGGTTTATACCCAAAAAACATT
7919219 TGAAGTCAATTGTAGGTTTATACCCAAAAAACATT
1 TGAAGTCAATTGTAGGTTTATACCCAAAAAACATT
7919254 TG
1 TG
7919256 GTTTATATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (35 bp):
TGAAGTCAATTGTAGGTTTATACCCAAAAAACATT
Found at i:7922450 original size:25 final size:25
Alignment explanation
Indices: 7922422--7922520 Score: 135
Period size: 25 Copynumber: 4.0 Consensus size: 25
7922412 ATGTGCTCAG
* * *
7922422 AAACACCATTTAGCAAACCATTCAA
1 AAACACCATTCAACAAACCATTTAA
* *
7922447 AAACACTATTCAACAAACCATTTAG
1 AAACACCATTCAACAAACCATTTAA
7922472 AAACACCATTCAACAAACCATTTAA
1 AAACACCATTCAACAAACCATTTAA
**
7922497 AAATGCCATTCAACAAACCATTTA
1 AAACACCATTCAACAAACCATTTA
7922521 GCAAAACAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.48, C:0.26, G:0.03, T:0.22
Consensus pattern (25 bp):
AAACACCATTCAACAAACCATTTAA
Found at i:7922478 original size:50 final size:50
Alignment explanation
Indices: 7922420--7922548 Score: 152
Period size: 50 Copynumber: 2.5 Consensus size: 50
7922410 CAATGTGCTC
* * *
7922420 AGAAACACCATTTAGCAAACCATTCAAAAACACTATTCAACAAACCATTT
1 AGAAACACCATTCAACAAACCATTCAAAAACACCATTCAACAAACCATTT
* **
7922470 AGAAACACCATTCAACAAACCATTTAAAAATGCCATTCAACAAACCATTT
1 AGAAACACCATTCAACAAACCATTCAAAAACACCATTCAACAAACCATTT
*
7922520 AGCAAA-ACAATATCATACAATACCATTCA
1 AG-AAACACCAT-TCA-ACAA-ACCATTCA
7922549 GTAAACCAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
50 50 0.75
51 6 0.09
52 4 0.06
53 7 0.10
ACGTcount: A:0.49, C:0.26, G:0.04, T:0.22
Consensus pattern (50 bp):
AGAAACACCATTCAACAAACCATTCAAAAACACCATTCAACAAACCATTT
Found at i:7922481 original size:13 final size:13
Alignment explanation
Indices: 7922418--7922483 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 13
7922408 AGCAATGTGC
7922418 TCAGAAACACCAT
1 TCAGAAACACCAT
* *
7922431 TTAGCAA-ACCAT
1 TCAGAAACACCAT
* *
7922443 TCAAAAACACTAT
1 TCAGAAACACCAT
7922456 TCA-ACAA-ACCAT
1 TCAGA-AACACCAT
*
7922468 TTAGAAACACCAT
1 TCAGAAACACCAT
7922481 TCA
1 TCA
7922484 ACAAACCATT
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
12 18 0.45
13 22 0.55
ACGTcount: A:0.47, C:0.27, G:0.05, T:0.21
Consensus pattern (13 bp):
TCAGAAACACCAT
Found at i:7922525 original size:12 final size:12
Alignment explanation
Indices: 7922435--7922518 Score: 75
Period size: 13 Copynumber: 6.8 Consensus size: 12
7922425 CACCATTTAG
7922435 CAAACCATTCAA
1 CAAACCATTCAA
7922447 -AAACACTATTCAA
1 CAAAC-C-ATTCAA
*
7922460 CAAACCATTTAGA
1 CAAACCATTCA-A
7922473 -AACACCATTCAA
1 CAA-ACCATTCAA
*
7922485 CAAACCATTTAA
1 CAAACCATTCAA
7922497 -AAATGCCATTCAA
1 CAAA--CCATTCAA
7922510 CAAACCATT
1 CAAACCATT
7922519 TAGCAAAACA
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
11 7 0.12
12 21 0.36
13 24 0.41
14 7 0.12
ACGTcount: A:0.49, C:0.27, G:0.02, T:0.21
Consensus pattern (12 bp):
CAAACCATTCAA
Found at i:7922545 original size:28 final size:28
Alignment explanation
Indices: 7922509--7922590 Score: 103
Period size: 28 Copynumber: 2.9 Consensus size: 28
7922499 ATGCCATTCA
7922509 ACAA-ACCATTTAGCAAAACAATATCAT
1 ACAATACCATTTAGCAAAACAATATCAT
* * * *
7922536 ACAATACCATTCAGTAAACCAATATTAT
1 ACAATACCATTTAGCAAAACAATATCAT
7922564 ACAATACCATTTAGCAAACTACAATAT
1 ACAATACCATTTAGCAAA--ACAATAT
7922591 TTAAATCAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
27 4 0.09
28 35 0.78
30 6 0.13
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.26
Consensus pattern (28 bp):
ACAATACCATTTAGCAAAACAATATCAT
Found at i:7922807 original size:14 final size:14
Alignment explanation
Indices: 7922790--7922831 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
7922780 TCTTCTTTTG
7922790 TATT-TTATGTATTC
1 TATTATTAT-TATTC
*
7922804 TATTATTATTATTAT
1 TATTATTATTATT-C
7922819 TATTATTATTATT
1 TATTATTATTATT
7922832 ATGTATATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 8 0.32
15 17 0.68
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (14 bp):
TATTATTATTATTC
Found at i:7922812 original size:3 final size:3
Alignment explanation
Indices: 7922804--7922833 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7922794 TTATGTATTC
7922804 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7922834 GTATATCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7923455 original size:31 final size:31
Alignment explanation
Indices: 7923396--7923455 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
7923386 AATTTCCAGA
* **
7923396 TTTCGGCGAAAATTCCGGCGAAGTTTGAATT
1 TTTCGGCGAAAATTCCGGCCAACATTGAATT
*
7923427 TTTCGGTGAAAATTCCGGCCAACATTGAA
1 TTTCGGCGAAAATTCCGGCCAACATTGAA
7923456 GTTTCCGACG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (31 bp):
TTTCGGCGAAAATTCCGGCCAACATTGAATT
Found at i:7923857 original size:5 final size:5
Alignment explanation
Indices: 7923847--7923872 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7923837 TTCCTGCCTT
7923847 GAGCC GAGCC GAGCC GAGCC GAGCC G
1 GAGCC GAGCC GAGCC GAGCC GAGCC G
7923873 CGATCCGAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.38, G:0.42, T:0.00
Consensus pattern (5 bp):
GAGCC
Found at i:7924040 original size:17 final size:18
Alignment explanation
Indices: 7924020--7924053 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7924010 TTTACTTTTC
7924020 TTTTT-TATTTTT-TTTA
1 TTTTTCTATTTTTCTTTA
7924036 TTTTTCTATTTTTCTTTA
1 TTTTTCTATTTTTCTTTA
7924054 AATAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 7 0.44
18 4 0.25
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTCTATTTTTCTTTA
Found at i:7924040 original size:22 final size:25
Alignment explanation
Indices: 7923995--7924048 Score: 78
Period size: 22 Copynumber: 2.3 Consensus size: 25
7923985 ATCTTTATTT
7923995 TATTTTTAGTTTTGTTTTACTTTTC
1 TATTTTTAGTTTTGTTTTACTTTTC
*
7924020 T-TTTTTA-TTTT-TTTTATTTTTC
1 TATTTTTAGTTTTGTTTTACTTTTC
7924042 TATTTTT
1 TATTTTT
7924049 CTTTAAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 11 0.41
23 9 0.33
24 6 0.22
25 1 0.04
ACGTcount: A:0.11, C:0.06, G:0.04, T:0.80
Consensus pattern (25 bp):
TATTTTTAGTTTTGTTTTACTTTTC
Found at i:7924163 original size:57 final size:57
Alignment explanation
Indices: 7924079--7924352 Score: 399
Period size: 57 Copynumber: 4.7 Consensus size: 57
7924069 AAGTTCCAAA
*
7924079 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
* * *
7924136 AAAAAATACTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTCA
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
* * *
7924193 AAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
*
7924250 AAAAAA-AGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTCC
1 AAAAAATA---TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTCC
7924311 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 -AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
7924353 CTAAAAAAAA
Statistics
Matches: 194, Mismatches: 15, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
56 1 0.01
57 110 0.57
58 1 0.01
59 36 0.19
60 32 0.16
61 7 0.04
62 6 0.03
63 1 0.01
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (57 bp):
AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
Found at i:7927832 original size:10 final size:10
Alignment explanation
Indices: 7927819--7927854 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
7927809 AAAAGGTCTC
7927819 AAAAATAAAA
1 AAAAATAAAA
7927829 AAAAATAAAA
1 AAAAATAAAA
7927839 AAAAATAAAA
1 AAAAATAAAA
7927849 AGAAAA
1 A-AAAA
7927855 AATGCCACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 21 0.84
11 4 0.16
ACGTcount: A:0.89, C:0.00, G:0.03, T:0.08
Consensus pattern (10 bp):
AAAAATAAAA
Found at i:7928192 original size:13 final size:13
Alignment explanation
Indices: 7928174--7928198 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7928164 ATCAACAATG
7928174 GATGAAAAAAAAT
1 GATGAAAAAAAAT
7928187 GATGAAAAAAAA
1 GATGAAAAAAAA
7928199 AAGAAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (13 bp):
GATGAAAAAAAAT
Found at i:7928204 original size:11 final size:11
Alignment explanation
Indices: 7928190--7928256 Score: 53
Period size: 11 Copynumber: 5.5 Consensus size: 11
7928180 AAAAAATGAT
7928190 GAAAAAAAAAA
1 GAAAAAAAAAA
*
7928201 GAAAAAAAAAG
1 GAAAAAAAAAA
7928212 GAAAAAAAGAAA
1 GAAAAAAA-AAA
*
7928224 AAATGAGAAAAAAA
1 GAA--A-AAAAAAA
7928238 GAAGGAAAAAATAA
1 GAA--AAAAAA-AA
7928252 GAAAA
1 GAAAA
7928257 TGAAAAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
11 18 0.39
12 6 0.13
13 5 0.11
14 13 0.28
15 4 0.09
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:7928205 original size:10 final size:10
Alignment explanation
Indices: 7928192--7928256 Score: 69
Period size: 10 Copynumber: 6.4 Consensus size: 10
7928182 AAAATGATGA
7928192 AAAAAAAAAG
1 AAAAAAAAAG
7928202 AAAAAAAAAG
1 AAAAAAAAAG
*
7928212 -GAAAAAAAG
1 AAAAAAAAAG
**
7928221 AAAAAATGAG
1 AAAAAAAAAG
7928231 AAAAAAAGAAGG
1 AAAAAAA-AA-G
*
7928243 AAAAAATAAG
1 AAAAAAAAAG
7928253 AAAA
1 AAAA
7928257 TGAAAAAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
9 8 0.18
10 27 0.60
11 3 0.07
12 7 0.16
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAG
Done.