Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 36 of 131
Found at i:7928216 original size:19 final size:18
Alignment explanation
Indices: 7928194--7928266 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
7928184 AATGATGAAA
7928194 AAAAAAAGAAAAAAAAAGG
1 AAAAAAAGAAAAAAAAA-G
**
7928213 AAAAAAAGAAAAAATGAG
1 AAAAAAAGAAAAAAAAAG
* *
7928231 AAAAAAAGAAGGAAAAAAT
1 AAAAAAAGAA-AAAAAAAG
*
7928250 AAGAAAATGAAAAAAAA
1 AA-AAAAAGAAAAAAAA
7928267 GATATTCAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
18 11 0.25
19 26 0.59
20 7 0.16
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (18 bp):
AAAAAAAGAAAAAAAAAG
Found at i:7928226 original size:30 final size:30
Alignment explanation
Indices: 7928192--7928248 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
7928182 AAAATGATGA
7928192 AAAAAAAAAGAAAAAAA-AAGGAAAAAAAG
1 AAAAAAAAAGAAAAAAAGAAGGAAAAAAAG
**
7928221 AAAAAATGAGAAAAAAAGAAGGAAAAAA
1 AAAAAAAAAGAAAAAAAGAAGGAAAAAA
7928249 TAAGAAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (30 bp):
AAAAAAAAAGAAAAAAAGAAGGAAAAAAAG
Found at i:7928237 original size:41 final size:40
Alignment explanation
Indices: 7928180--7928256 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 40
7928170 AATGGATGAA
7928180 AAAAAATGATGAAAAAAAAAAGAAAAAAAAAGGAAAAAAAG
1 AAAAAATGATGAAAAAAAAAAGAAAAAAAAA-GAAAAAAAG
* *
7928221 AAAAAATGA-GAAAAAAAGAAGGAAAAAATAAGAAAA
1 AAAAAATGATGAAAAAAA-AAAGAAAAAAAAAGAAAA
7928257 TGAAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
40 13 0.39
41 20 0.61
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (40 bp):
AAAAAATGATGAAAAAAAAAAGAAAAAAAAAGAAAAAAAG
Found at i:7928263 original size:29 final size:30
Alignment explanation
Indices: 7928200--7928268 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 30
7928190 GAAAAAAAAA
7928200 AGAAAAAAA-AAGGAAAAAAAGAAAAAATG
1 AGAAAAAAAGAAGGAAAAAAAGAAAAAATG
*
7928229 AGAAAAAAAGAAGGAAAAAATA-AGAAAATG
1 AGAAAAAAAGAAGGAAAAAA-AGAAAAAATG
7928259 A-AAAAAAAGA
1 AGAAAAAAAGA
7928269 TATTCAAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
29 18 0.49
30 18 0.49
31 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.04
Consensus pattern (30 bp):
AGAAAAAAAGAAGGAAAAAAAGAAAAAATG
Found at i:7928266 original size:41 final size:40
Alignment explanation
Indices: 7928178--7928266 Score: 110
Period size: 41 Copynumber: 2.2 Consensus size: 40
7928168 ACAATGGATG
7928178 AAAAAAAATGATGAAAAAAAAAAGAAAAAAAAAGGAAAAA
1 AAAAAAAATGATGAAAAAAAAAAGAAAAAAAAAGGAAAAA
* * *
7928218 AAGAAAAAATGA-GAAAAAAAGAAGGAAAAAATAA-GAAAATG
1 AA-AAAAAATGATGAAAAAAA-AAAGAAAAAAAAAGGAAAA-A
7928259 AAAAAAAA
1 AAAAAAAA
7928267 GATATTCAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
40 21 0.49
41 22 0.51
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.06
Consensus pattern (40 bp):
AAAAAAAATGATGAAAAAAAAAAGAAAAAAAAAGGAAAAA
Found at i:7928931 original size:12 final size:12
Alignment explanation
Indices: 7928913--7928946 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
7928903 GTGATGGTGG
7928913 ATGAAATTTGTT
1 ATGAAATTTGTT
*
7928925 TTGAAATTTGTT
1 ATGAAATTTGTT
7928937 ATGAAATTTG
1 ATGAAATTTG
7928947 CTAGCGCTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (12 bp):
ATGAAATTTGTT
Found at i:7929560 original size:43 final size:40
Alignment explanation
Indices: 7929486--7930153 Score: 431
Period size: 40 Copynumber: 16.9 Consensus size: 40
7929476 GTCTGGAGTA
*
7929486 TTACTTTTCCAAGTTCGT-TGCCTCTGTTTAGAGGAGCAAT
1 TTACTTTTCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCAAT
7929526 TTACTTTTCAAAAGTCGTGGTGCCTCCTGTTTAGAGGAGGGCAAT
1 TTACTTTTC-AAAGTCGT-GTGCCT-CTGTTTAGAGGA--GCAAT
7929571 TTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGTA-GAGCGAAT
1 TTACTTTTC-AAAGTCGT-GTGCCTCTGTTTAG-AGGAGC-AAT
*
7929614 TTATTTTTCAAAGTTCGT-TGCCTCTGTTTAGAGGAGCAAT
1 TTACTTTTCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCAAT
* *
7929654 TTATTTTTCAAAGTTTTCAAAGTTCCGTTGCCTTCTGTTTAGAGGAGCATT
1 TTACTTTTCAAAG---TC---G-T--G-TGCC-TCTGTTTAGAGGAGCAAT
* * *
7929705 TTATTTTTCAAAAGTTTCGT-TGGCCTCTGTTGAGATGAGCAAT
1 TTACTTTTC-AAAG--TCGTGT-GCCTCTGTTTAGAGGAGCAAT
* *
7929748 TTACTTTTCCAAAGTCGTGGTACCTCTGTTGAGCAGGAGC-AT
1 TTACTTTT-CAAAGTCGT-GTGCCTCTGTTTAG-AGGAGCAAT
*
7929790 TTA--TTTCAAAGTTC-TGTTGCCTCTGTTTAGAAGAGCAAT
1 TTACTTTTCAAAG-TCGTG-TGCCTCTGTTTAGAGGAGCAAT
* * *
7929829 TTAC-TTTC-AAGTC-TTTTCCATTCTGTTTAGAGGAGCATT
1 TTACTTTTCAAAGTCGTGTGCC--TCTGTTTAGAGGAGCAAT
*
7929868 TTAC-TTTCAAAATCGT-TGCCTCTGTTTAGA--AGCATAT
1 TTACTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCA-AT
* *
7929905 TTACTTTTCAAAGTCG-G-GACTCTGTTT-CA-G-GC---
1 TTACTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCAAT
* *
7929937 -TACTTTTCAAAATTC-TGTG-----GTTGAGAGGAGCAAT
1 TTACTTTTC-AAAGTCGTGTGCCTCTGTTTAGAGGAGCAAT
*
7929971 TTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC-AT
1 TTACTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAAT
*
7930011 TTACTTTTCAAAGTCGTGT--CTCTGTTGAGAGGAGC--T
1 TTACTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCAAT
* *
7930047 GT-CTTTTCAAA-TCGTGTGCCTCTG-TT-GA-GA-AAAT
1 TTACTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCAAT
* *
7930081 TTAC-TTTCAAA-T-AT-TGCCTCTG-TTAGAAGAGCAAT
1 TTACTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCAAT
* *
7930116 TTAC-TTTCAAAAGTCGTTGAGTCTCTGTTTAGAGGAGC
1 TTACTTTTC-AAAGTCG-TGTGCCTCTGTTTAGAGGAGC
7930154 TTCGGCCAAA
Statistics
Matches: 518, Mismatches: 40, Indels: 139
0.74 0.06 0.20
Matches are distributed among these distances:
28 3 0.01
29 1 0.00
30 1 0.00
31 10 0.02
32 16 0.03
33 6 0.01
34 25 0.05
35 30 0.06
36 20 0.04
37 33 0.06
38 29 0.06
39 52 0.10
40 70 0.14
41 45 0.09
42 30 0.06
43 60 0.12
44 14 0.03
45 32 0.06
46 1 0.00
47 1 0.00
48 1 0.00
50 4 0.01
51 30 0.06
52 4 0.01
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (40 bp):
TTACTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCAAT
Found at i:7929578 original size:45 final size:42
Alignment explanation
Indices: 7929504--7930153 Score: 384
Period size: 43 Copynumber: 16.5 Consensus size: 42
7929494 CCAAGTTCGT
7929504 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
7929546 TGCCTCCTGTTTAGAGGAGGGCAATTTACTTTTCAAAAGTCGTGG
1 TGCCT-CTGTTTAGAGGA--GCAATTTACTTTTCAAAAGTCGTGG
*
7929591 TGCCTCTGTTTAGTA-GAGCGAATTTATTTTTC-AAAGTTCGT--
1 TGCCTCTGTTTAG-AGGAGC-AATTTACTTTTCAAAAG-TCGTGG
* *
7929632 TGCCTCTGTTTAGAGGAGCAATTTATTTTTC-AAAGTTTTCAAAGTTCCGT
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAG---TC---G-T--GG
* * *
7929682 TGCCTTCTGTTTAGAGGAGCATTTTATTTTTCAAAAGTTTCGTTG
1 TGCC-TCTGTTTAGAGGAGCAATTTACTTTTCAAAAG--TCGTGG
* * *
7929727 -GCCTCTGTTGAGATGAGCAATTTACTTTTCCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
* * *
7929768 TACCTCTGTTGAGCAGGAGC-ATTTA--TTTC-AAAGTTC-TGT
1 TGCCTCTGTTTAG-AGGAGCAATTTACTTTTCAAAAG-TCGTGG
* *
7929807 TGCCTCTGTTTAGAAGAGCAATTTAC-TTTC--AAGTC-T-T
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
* *
7929844 TTCCATTCTGTTTAGAGGAGCATTTTAC-TTTCAAAA-TCGT--
1 TGCC--TCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
7929884 TGCCTCTGTTTAGA--AGCATATTTACTTTTC-AAAGTC--GG
1 TGCCTCTGTTTAGAGGAGCA-ATTTACTTTTCAAAAGTCGTGG
* * *
7929922 -GACTCTGTTT-CA-G-GC----TACTTTTCAAAATTC-T-G
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
* *
7929954 TG-----GTTGAGAGGAGCAATTTATTTTTC-AAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
7929990 TGCCTCTGTTTAGAGGAGC-ATTTACTTTTC-AAAGTCGT-G
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
* *
7930029 T--CTCTGTTGAGAGGAGC--TGT-CTTTTC-AAA-TCGT-G
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
* *
7930063 TGCCTCTG-TT-GA-GA-AAATTTAC-TTTC-AAA-T-AT--
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
* *
7930095 TGCCTCTG-TTAGAAGAGCAATTTAC-TTTCAAAAGTCGTTG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
* *
7930135 AGTCTCTGTTTAGAGGAGC
1 TGCCTCTGTTTAGAGGAGC
7930154 TTCGGCCAAA
Statistics
Matches: 501, Mismatches: 41, Indels: 133
0.74 0.06 0.20
Matches are distributed among these distances:
28 3 0.01
29 1 0.00
30 1 0.00
31 10 0.02
32 16 0.03
33 6 0.01
34 25 0.05
35 30 0.06
36 20 0.04
37 37 0.07
38 25 0.05
39 51 0.10
40 56 0.11
41 45 0.09
42 30 0.06
43 59 0.12
44 13 0.03
45 32 0.06
46 1 0.00
47 1 0.00
48 1 0.00
50 4 0.01
51 30 0.06
52 4 0.01
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (42 bp):
TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
Found at i:7929698 original size:51 final size:50
Alignment explanation
Indices: 7929618--7929721 Score: 174
Period size: 51 Copynumber: 2.1 Consensus size: 50
7929608 GCGAATTTAT
7929618 TTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTC-AAAG
1 TTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAAG
*
7929667 TTTTCAAAGTTCCGTTGCCTTCTGTTTAGAGGAGCATTTTATTTTTCAAAAG
1 TTTTCAAAGTT-CGTTGCC-TCTGTTTAGAGGAGCAATTTATTTTTCAAAAG
7929719 TTT
1 TTT
7929722 CGTTGGCCTC
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
49 11 0.22
50 7 0.14
51 26 0.51
52 7 0.14
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.45
Consensus pattern (50 bp):
TTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAAG
Found at i:7929756 original size:94 final size:92
Alignment explanation
Indices: 7929591--7929762 Score: 242
Period size: 94 Copynumber: 1.8 Consensus size: 92
7929581 AAAGTCGTGG
*
7929591 TGCCTCTGTTTAGTAGAGCGAATTTATTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTT
1 TGCCTCTGTTTAGTAGAGCGAATTTATTTTTCAAAGTTCGTTGCCTCTGTTGAGAGGAGCAATTT
*
7929656 A-TTTTTCAAAGTTTTCAAAGTTCCGT
66 ACTTTTCCAAAGTTTTCAAAGTTCCGT
* *
7929682 TGCCTTCTGTTTAG-AGGAGC-ATTTTATTTTTCAAAAGTTTCGTTGGCCTCTGTTGAGATGAGC
1 TGCC-TCTGTTTAGTA-GAGCGAATTTATTTTTC-AAAG-TTCGTT-GCCTCTGTTGAGAGGAGC
7929745 AATTTACTTTTCCAAAGT
61 AATTTACTTTTCCAAAGT
7929763 CGTGGTACCT
Statistics
Matches: 71, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
91 16 0.23
92 17 0.24
93 6 0.08
94 22 0.31
95 10 0.14
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (92 bp):
TGCCTCTGTTTAGTAGAGCGAATTTATTTTTCAAAGTTCGTTGCCTCTGTTGAGAGGAGCAATTT
ACTTTTCCAAAGTTTTCAAAGTTCCGT
Found at i:7929813 original size:39 final size:39
Alignment explanation
Indices: 7929668--7929918 Score: 180
Period size: 39 Copynumber: 6.2 Consensus size: 39
7929658 TTTTCAAAGT
* *
7929668 TTTCAAAGTTCCGTTGCCTTCTGTTTAGAGGAGCATTTTATT
1 TTTCAAAGTTCTGTTGCC-TCTGTTTAGAGGAGCA-TTTA-C
* *
7929710 TTTCAAAAGTT-TCGTTGGCCTCTGTTGAGATGAGCAATTTAC
1 TTTC-AAAGTTCT-GTT-GCCTCTGTTTAGAGGAGC-ATTTAC
* * *
7929752 TTTTCCAAAG-TCGTGGTACCTCTGTTGAGCAGGAGCATTTA-
1 -TTT-CAAAGTTC-TGTTGCCTCTGTTTAG-AGGAGCATTTAC
*
7929793 TTTCAAAGTTCTGTTGCCTCTGTTTAGAAGAGCAATTTAC
1 TTTCAAAGTTCTGTTGCCTCTGTTTAGAGGAGC-ATTTAC
*
7929833 TTTC-AAG-TCT-TTTCCATTCTGTTTAGAGGAGCATTTTAC
1 TTTCAAAGTTCTGTTGCC--TCTGTTTAGAGGAGCA-TTTAC
*
7929872 TTTCAAA-ATC-GTTGCCTCTGTTTAGA--AGCATATTTAC
1 TTTCAAAGTTCTGTTGCCTCTGTTTAGAGGAGC--ATTTAC
7929909 TTTTCAAAGT
1 -TTTCAAAGT
7929919 CGGGACTCTG
Statistics
Matches: 172, Mismatches: 15, Indels: 47
0.74 0.06 0.20
Matches are distributed among these distances:
36 3 0.02
37 9 0.05
38 27 0.16
39 49 0.28
40 17 0.10
42 21 0.12
43 40 0.23
44 6 0.03
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (39 bp):
TTTCAAAGTTCTGTTGCCTCTGTTTAGAGGAGCATTTAC
Found at i:7929914 original size:38 final size:38
Alignment explanation
Indices: 7929679--7930149 Score: 143
Period size: 39 Copynumber: 12.5 Consensus size: 38
7929669 TTCAAAGTTC
*
7929679 CGTTGCCTTCTGTTTAGAGGAGCAT-TTTATTTTTCAAAAGTTT
1 CGTTGCC-TCTGTTTAGA-GAGCATATTTA-CTTTCAAAA---T
* *
7929722 CGTTGGCCTCTGTTGAGATGAGCA-ATTTACTTTTCCAAAGT
1 CGTT-GCCTCTGTTTAGA-GAGCATATTTAC-TTT-CAAAAT
* * *
7929763 CGTGGTACCTCTGTTGAGCAGGAGC--ATTTA-TTTCAAAGTT
1 CGT--TGCCTCTGTTTAG-A-GAGCATATTTACTTTCAAA-AT
*
7929803 CTGTTGCCTCTGTTTAGAAGAGCA-ATTTACTTTC-AAGT
1 C-GTTGCCTCTGTTTAG-AGAGCATATTTACTTTCAAAAT
* *
7929841 CTTTTCCATTCTGTTTAGAGGAGCAT-TTTACTTTCAAAAT
1 CGTTGCC--TCTGTTTAGA-GAGCATATTTACTTTCAAAAT
*
7929881 CGTTGCCTCTGTTTAGA-AGCATATTTACTTTTCAAAGT
1 CGTTGCCTCTGTTTAGAGAGCATATTTAC-TTTCAAAAT
* * * *
7929919 CG-GGACTCTGTTT-CAG-GC-TA-CT--TTTCAAAAT
1 CGTTGCCTCTGTTTAGAGAGCATATTTACTTTCAAAAT
* * * *
7929950 --TCTG--T-GGTTGAGAGGAGCA-ATTTATTTTTCAAAGT
1 CGT-TGCCTCTGTTTAGA-GAGCATATTTA-CTTTCAAAAT
*
7929985 CGTGGTGCCTCTGTTTAGAGGAGC--ATTTACTTTTCAAAGT
1 CGT--TGCCTCTGTTTAGA-GAGCATATTTAC-TTTCAAAAT
* * * *
7930025 CG-TGTCTCTGTTGAGAGGAGC-TGTCT--TTTC-AAAT
1 CGTTGCCTCTGTTTAGA-GAGCATATTTACTTTCAAAAT
*
7930059 CGTGTGCCTCTG-TT-GAGA--AAATTTACTTTC-AAAT
1 CGT-TGCCTCTGTTTAGAGAGCATATTTACTTTCAAAAT
*
7930093 -ATTGCCTCTG-TTAGAAGAGCA-ATTTACTTTCAAAAGT
1 CGTTGCCTCTGTTTAG-AGAGCATATTTACTTTCAAAA-T
*
7930130 CGTTGAGTCTCTGTTTAGAG
1 CGTT--GCCTCTGTTTAGAG
7930150 GAGCTTCGGC
Statistics
Matches: 331, Mismatches: 45, Indels: 107
0.69 0.09 0.22
Matches are distributed among these distances:
28 3 0.01
29 2 0.01
30 1 0.00
31 12 0.04
32 13 0.04
33 4 0.01
34 19 0.06
35 25 0.08
36 19 0.06
37 37 0.11
38 33 0.10
39 46 0.14
40 42 0.13
41 21 0.06
42 16 0.05
43 31 0.09
44 7 0.02
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (38 bp):
CGTTGCCTCTGTTTAGAGAGCATATTTACTTTCAAAAT
Found at i:7929914 original size:77 final size:77
Alignment explanation
Indices: 7929684--7929920 Score: 234
Period size: 77 Copynumber: 2.9 Consensus size: 77
7929674 AGTTCCGTTG
*
7929684 CCTTCTGTTTAGAGGAGCATTTTATTTTTCAAAAGTTTCGTTGGCCTCTGTTGAGATGAGCAATT
1 CCTTCTGTTTAGAGGAGCATTTTA--TTTCAAAA---TCGTT-GCCTCTGTTTAGA-GAGCAATT
7929749 TACTTTTCCAAAGTCGTGGTA
59 TACTTTT-C-AAGTCGTGGTA
* *
7929770 CC-TCTGTTGAGCAGGAGCA-TTTATTTCAAAGTTCTGTTGCCTCTGTTTAGAAGAGCAATTTAC
1 CCTTCTGTTTAG-AGGAGCATTTTATTTCAAA-ATC-GTTGCCTCTGTTTAG-AGAGCAATTTAC
* *
7929833 -TTTCAAGTC-T-TTT
62 TTTTCAAGTCGTGGTA
7929846 CCATTCTGTTTAGAGGAGCATTTTACTTTCAAAATCGTTGCCTCTGTTTAGA-AGCATATTTACT
1 CC-TTCTGTTTAGAGGAGCATTTTA-TTTCAAAATCGTTGCCTCTGTTTAGAGAGCA-ATTTACT
7929910 TTTCAAAGTCG
63 TTTC-AAGTCG
7929921 GGACTCTGTT
Statistics
Matches: 132, Mismatches: 7, Indels: 31
0.78 0.04 0.18
Matches are distributed among these distances:
75 4 0.03
76 10 0.08
77 27 0.20
78 24 0.18
79 8 0.06
80 3 0.02
81 24 0.18
82 4 0.03
83 7 0.05
85 12 0.09
86 9 0.07
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.41
Consensus pattern (77 bp):
CCTTCTGTTTAGAGGAGCATTTTATTTCAAAATCGTTGCCTCTGTTTAGAGAGCAATTTACTTTT
CAAGTCGTGGTA
Found at i:7930104 original size:32 final size:35
Alignment explanation
Indices: 7930063--7930126 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
7930053 TCAAATCGTG
7930063 TGCCTCTGTT-G-AGA-AAATTTACTTTCAAATAT
1 TGCCTCTGTTAGAAGAGAAATTTACTTTCAAATAT
*
7930095 TGCCTCTGTTAGAAGAGCAATTTACTTTCAAA
1 TGCCTCTGTTAGAAGAGAAATTTACTTTCAAA
7930127 AGTCGTTGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 10 0.36
33 1 0.04
34 3 0.11
35 14 0.50
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (35 bp):
TGCCTCTGTTAGAAGAGAAATTTACTTTCAAATAT
Found at i:7930247 original size:15 final size:14
Alignment explanation
Indices: 7930160--7930254 Score: 122
Period size: 15 Copynumber: 6.7 Consensus size: 14
7930150 GAGCTTCGGC
7930160 CAAAAAAAAAAAAA
1 CAAAAAAAAAAAAA
7930174 -AAAAAAAAAAAAA
1 CAAAAAAAAAAAAA
7930187 -AAAAAAAAAAAAA
1 CAAAAAAAAAAAAA
*
7930200 AAAAAAACAAAAAAA
1 CAAAAAA-AAAAAAA
*
7930215 AAAAAAAAAAAAAA
1 CAAAAAAAAAAAAA
*
7930229 CAAAATAAAAAAAAT
1 CAAAA-AAAAAAAAA
7930244 CAAAATAAAAA
1 CAAAA-AAAAA
7930255 TGTTGAGTTG
Statistics
Matches: 76, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
13 26 0.34
14 17 0.22
15 33 0.43
ACGTcount: A:0.93, C:0.04, G:0.00, T:0.03
Consensus pattern (14 bp):
CAAAAAAAAAAAAA
Found at i:7930248 original size:6 final size:6
Alignment explanation
Indices: 7930161--7930255 Score: 56
Period size: 5 Copynumber: 18.0 Consensus size: 6
7930151 AGCTTCGGCC
*
7930161 AAAAA- AAAAA- AAAAA- AAAAA- AAAAA- AAAAA- AAAAA- AAAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
7930202 AAAAAC AAAAA- AAAAA- AAAAA- AAAAA- ACAAAAT --AAA- AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT
*
7930244 CAAAAT AAAAAT
1 AAAAAT AAAAAT
7930256 GTTGAGTTGA
Statistics
Matches: 81, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
4 3 0.04
5 54 0.67
6 24 0.30
ACGTcount: A:0.93, C:0.03, G:0.00, T:0.04
Consensus pattern (6 bp):
AAAAAT
Found at i:7930254 original size:1 final size:1
Alignment explanation
Indices: 7930161--7930242 Score: 137
Period size: 1 Copynumber: 82.0 Consensus size: 1
7930151 AGCTTCGGCC
*
7930161 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
7930226 AAACAAAATAAAAAAAA
1 AAAAAAAAAAAAAAAAA
7930243 TCAAAATAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 75 1.00
ACGTcount: A:0.96, C:0.02, G:0.00, T:0.01
Consensus pattern (1 bp):
A
Found at i:7931079 original size:30 final size:30
Alignment explanation
Indices: 7931043--7931099 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
7931033 TTCCGGCGAA
* ** *
7931043 AATTCCGGCGAAGTTTGAATTTTCGGCAAC
1 AATTCCGGCCAACATTGAAGTTTCGGCAAC
7931073 AATTCCGGCCAACATTGAAGTTTCGGC
1 AATTCCGGCCAACATTGAAGTTTCGGC
7931100 GACCTGCCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (30 bp):
AATTCCGGCCAACATTGAAGTTTCGGCAAC
Found at i:7931184 original size:20 final size:20
Alignment explanation
Indices: 7931159--7931196 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7931149 AACTTCCGCG
*
7931159 AAATTTCCAGATTCCGGCGA
1 AAATTTCCAGAATCCGGCGA
7931179 AAATTTCCAGAATCCGGC
1 AAATTTCCAGAATCCGGC
7931197 ACCGGTGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (20 bp):
AAATTTCCAGAATCCGGCGA
Found at i:7931524 original size:12 final size:11
Alignment explanation
Indices: 7931500--7931559 Score: 59
Period size: 12 Copynumber: 5.4 Consensus size: 11
7931490 CCGCTCCAGG
7931500 TTTTTTTTTT-
1 TTTTTTTTTTA
*
7931510 TTTTTTTTTAA
1 TTTTTTTTTTA
*
7931521 TTTTTGTTTTA
1 TTTTTTTTTTA
*
7931532 TTTGTTTATTTA
1 TTT-TTTTTTTA
*
7931544 TATTTTTATTTA
1 T-TTTTTTTTTA
7931556 TTTT
1 TTTT
7931560 AGATTAGGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
10 9 0.21
11 15 0.36
12 16 0.38
13 2 0.05
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:7931539 original size:20 final size:20
Alignment explanation
Indices: 7931501--7931539 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7931491 CGCTCCAGGT
* * *
7931501 TTTTTTTTTTTTTTTTTTAA
1 TTTTTGTTTTATTTGTTTAA
7931521 TTTTTGTTTTATTTGTTTA
1 TTTTTGTTTTATTTGTTTA
7931540 TTTATATTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.10, C:0.00, G:0.05, T:0.85
Consensus pattern (20 bp):
TTTTTGTTTTATTTGTTTAA
Found at i:7931643 original size:28 final size:29
Alignment explanation
Indices: 7931590--7931646 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
7931580 TCTTTTTATC
*
7931590 TTTATTTATTTTTATTTTTTACTTTCTTT
1 TTTATTTATTTTTATTTTCTACTTTCTTT
* *
7931619 TTTATTTTTTTTTA-TTTCTATTTTCTTT
1 TTTATTTATTTTTATTTTCTACTTTCTTT
7931647 AAATAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81
Consensus pattern (29 bp):
TTTATTTATTTTTATTTTCTACTTTCTTT
Found at i:7931734 original size:58 final size:58
Alignment explanation
Indices: 7931672--7931888 Score: 348
Period size: 58 Copynumber: 3.7 Consensus size: 58
7931662 AAGTTTCCAA
7931672 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
* * * *
7931730 AAAAAATTACTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTT-C
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
7931787 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTCC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTCC
*
7931847 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
7931889 CTAAAAAAAA
Statistics
Matches: 146, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
56 1 0.01
57 45 0.31
58 52 0.36
59 6 0.04
60 42 0.29
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (58 bp):
AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
Found at i:7931878 original size:117 final size:115
Alignment explanation
Indices: 7931672--7931888 Score: 382
Period size: 115 Copynumber: 1.9 Consensus size: 115
7931662 AAGTTTCCAA
*
7931672 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAAT
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAAA
7931737 TACTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
66 TACTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
7931787 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTCCAAAA
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTCCAAAA
*
7931851 AAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
63 AAATACTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
7931889 CTAAAAAAAA
Statistics
Matches: 97, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
114 1 0.01
115 48 0.49
117 48 0.49
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (115 bp):
AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAAA
TACTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
Found at i:7933610 original size:62 final size:64
Alignment explanation
Indices: 7933458--7933619 Score: 199
Period size: 62 Copynumber: 2.6 Consensus size: 64
7933448 AATGAAAAGG
* * * **
7933458 ATTATTGAATGTATTTTCTA-TAAAAAAAATACCTTCAATAATTTCTTTTAAAAATTTTGAGGGA
1 ATTATTAAAGGTATTTT-TAGTCAAAAAAATACCTTCAATAATTTCTCGTAAAAATTTTGAGGGA
* * *
7933522 ATTATTAAAGGTATTTTTAGTC--AAAAACACCTTCAATAATCTTCTCGTCAAAA-TTTGAGGGG
1 ATTATTAAAGGTATTTTTAGTCAAAAAAATACCTTCAATAAT-TTCTCGTAAAAATTTTGAGGGA
7933584 ATTATTAAAGGTATTTTTAG-CAAAAAAATACCTTCA
1 ATTATTAAAGGTATTTTTAGTCAAAAAAATACCTTCA
7933620 TTGATCATTT
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
61 1 0.01
62 45 0.53
63 23 0.27
64 16 0.19
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (64 bp):
ATTATTAAAGGTATTTTTAGTCAAAAAAATACCTTCAATAATTTCTCGTAAAAATTTTGAGGGA
Found at i:7934422 original size:501 final size:502
Alignment explanation
Indices: 7933472--7934468 Score: 1737
Period size: 501 Copynumber: 2.0 Consensus size: 502
7933462 TTGAATGTAT
* *
7933472 TTTCTATAAAAAAAATACCTTCAATAATTTCTTTTAAAAATTTTGAGGGAATTATTAAAGGTATT
1 TTTCTATAAAAAAAATACCTTCAATAATTTCTTTTAAAAATTTCGAGGAAATTATTAAAGGTATT
* *
7933537 TTTAGTCAAAAACACCTTCAATAATCTTCTCGTCAAAATTTGAGGGGATTATTAAAGGTATTTTT
66 TTTAATCAAAAACACCTTCAATAATCTCCTCGTCAAAATTTGAGGGGATTATTAAAGGTATTTTT
* * * * *
7933602 AGCAAAAAAATACCTTCATTGATCATTTTTTATATTCATTTTCCTGTCTTGAACTTCGAAATCAT
131 AGCAAAAAAATACCTTCACTAATCATTTTTTATATTCATTTCCCTATCTTGAACTTCAAAATCAT
7933667 TTTTATATAATTTTTTAAAACTTCTCCCAACTCATAACATTATAATTTAGTGGCATTTGTTTGTT
196 TTTTATATAATTTTTTAAAACTTCTCCCAACTCATAACATTATAATTTAGTGGCATTTGTTTGTT
* * *
7933732 GAAAACGCCTCTATTTGTCAAATTTATAGGTTTTTGTCTTACAAACTCTACTAAAATTGTCCCCA
261 AAAAACGCCTCTATTTGTCAAATTTATAGGCTTTTGTCTTACAAACTCTACTAAAATTATCCCCA
* * *
7933797 AACTTAGTGTATTGAATGCCCAACTTCAAGCCTCAACTTCATTAATCTACTATTTCTCATTTCAG
326 AACTTAGTGTAGTGAATCCCCAACTTCAAGCCTCAACTTCATTAATCTACTATTTCTCATTTCAA
7933862 ACCAACTACAATTTACTTTCCCTTTCCTTCAGCTTTTACTATTTGAACTTTATCTTTTGGAACCT
391 ACCAACTACAATTTACTTTCCCTTTCCTTCAGCTTTTACTATTTGAACTTTATCTTTTGGAACCT
*
7933927 TATTTTTACTATTTTTTCATTATTTACTTTACCTTTTATTTTTTTTA
456 TATTTTTACTATTCTTTCATTATTTACTTTACCTTTTATTTTTTTTA
* *
7933974 TTTCTATAAAAAAAATACCTTCAATAATTTTTTTTTAAAAA-TTCGAGGAAATTATTGAAGGTAT
1 TTTCTATAAAAAAAATACCTTCAATAA-TTTCTTTTAAAAATTTCGAGGAAATTATTAAAGGTAT
* *
7934038 TTTTAATCAAAAACA-CTTTAATAATCTCCTCGTCAAAATTTGAGGGGATTATTAAATGTATTTT
65 TTTTAATCAAAAACACCTTCAATAATCTCCTCGTCAAAATTTGAGGGGATTATTAAAGGTATTTT
* *
7934102 TGGTAAAAAAATACCTTCACTAATCATTTTTTATATTCATTTCCCTATCTTGAACTTCAAAATCA
130 TAGCAAAAAAATACCTTCACTAATCATTTTTTATATTCATTTCCCTATCTTGAACTTCAAAATCA
*
7934167 TTTTTATGTAATTTTTTAAAACTTCTCCCAACTCATAACATTATAATTTAGTGGCATTTGTTTGT
195 TTTTTATATAATTTTTTAAAACTTCTCCCAACTCATAACATTATAATTTAGTGGCATTTGTTTGT
7934232 TAAAAACGCCTCTATTTGTCAAATTTATAGGCTTTTGTCTTACAAACTCTACTAAAATTATCCCC
260 TAAAAACGCCTCTATTTGTCAAATTTATAGGCTTTTGTCTTACAAACTCTACTAAAATTATCCCC
*
7934297 AAACTTAGTGTAGTGAATCCCCAACTTCAAGCCTCAACTTCATTAATCTACTATTTCTCATTTTA
325 AAACTTAGTGTAGTGAATCCCCAACTTCAAGCCTCAACTTCATTAATCTACTATTTCTCATTTCA
*
7934362 AACCAACTACAATTTACTTTCCCTTTCCTTCAGCTTTTACTATTTGAACTTTGTCTTTTGGAACC
390 AACCAACTACAATTTACTTTCCCTTTCCTTCAGCTTTTACTATTTGAACTTTATCTTTTGGAACC
*
7934427 TTATTTTTATTATTCTTTCATTATTTACTTTACCTTTTATTT
455 TTATTTTTACTATTCTTTCATTATTTACTTTACCTTTTATTT
7934469 CATTCTACTA
Statistics
Matches: 468, Mismatches: 26, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
501 395 0.84
502 61 0.13
503 12 0.03
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.44
Consensus pattern (502 bp):
TTTCTATAAAAAAAATACCTTCAATAATTTCTTTTAAAAATTTCGAGGAAATTATTAAAGGTATT
TTTAATCAAAAACACCTTCAATAATCTCCTCGTCAAAATTTGAGGGGATTATTAAAGGTATTTTT
AGCAAAAAAATACCTTCACTAATCATTTTTTATATTCATTTCCCTATCTTGAACTTCAAAATCAT
TTTTATATAATTTTTTAAAACTTCTCCCAACTCATAACATTATAATTTAGTGGCATTTGTTTGTT
AAAAACGCCTCTATTTGTCAAATTTATAGGCTTTTGTCTTACAAACTCTACTAAAATTATCCCCA
AACTTAGTGTAGTGAATCCCCAACTTCAAGCCTCAACTTCATTAATCTACTATTTCTCATTTCAA
ACCAACTACAATTTACTTTCCCTTTCCTTCAGCTTTTACTATTTGAACTTTATCTTTTGGAACCT
TATTTTTACTATTCTTTCATTATTTACTTTACCTTTTATTTTTTTTA
Found at i:7935061 original size:42 final size:42
Alignment explanation
Indices: 7935013--7935097 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
7935003 TTCATATAAT
*
7935013 TTATTTATATAATTTTAGTCTGATAATGTAGCAAGTACTAAA
1 TTATTTATATAATTTTAGTCTAATAATGTAGCAAGTACTAAA
*
7935055 TTATTTATATAATTTTGGTCTAATAATGTAGCAAGTACTAAA
1 TTATTTATATAATTTTAGTCTAATAATGTAGCAAGTACTAAA
7935097 T
1 T
7935098 GGATCATGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.44
Consensus pattern (42 bp):
TTATTTATATAATTTTAGTCTAATAATGTAGCAAGTACTAAA
Found at i:7938550 original size:970 final size:963
Alignment explanation
Indices: 7935876--7938782 Score: 3554
Period size: 964 Copynumber: 3.0 Consensus size: 963
7935866 TTTTACTTTA
* * *
7935876 GCATTTGGATGTACTTTTTGAGCATTTCATTTTCTTACTGAGCTTTGACATAATCATCTTCCATT
1 GCATTTGGATGTACTATCTAAGCATTTCATTTTCTTACTGAGCTTTGACATAATCAT-TTCCATT
* * *
7935941 T-GAGAGCATTCTCTTTTCAGCTTTTTATTCTCACAAATCAAATTTGTGTTATTTATTTCTTTGG
65 TAGA-AGCATTCTCTTTTCAGCTTTTCATTCTCACAAGTCAAATTTATGTTATTTATTTCTTTGG
* **
7936005 CTTGTATCTATATGTGTAAATTTTTGTGTTCTTGTTATAGAACCATCAGC-TCTTTAAGGGCATT
129 CTTGTATCTATATGTGT-AATTTTTGTGTTCTTGTTGTAGCTCCATCAGCTTC-TTAAGGGCATT
* * *
7936069 ATCATGTTTTTTGATAACCTTTTAAGTCTTGCTCTTGGTCTCTAATATCTTTTGTTGTTGATCTT
192 ATCATGTTTTTTGATAACCTTTTAAGTCTTGCTCTTAGTCTTTAATATCTTGTGTTGTTGATCTT
* * *
7936134 TAACTATCATGTTGCACTCCTTGGAAATCTTGTGGACTTGAACTTCTAACTTTTTTACTTTATCT
257 TAACTATCATGTTGCACTCCTTAGAAATCTTATGGACTTGAACTTCTAACTTTTTTACTTTGTCT
* * * * *
7936199 TTCCATTATCC-TTTTTTTTTTTAAGCCTTAGAATTTCTTGTTTCATTTTATCTTTCTCAACTTC
322 TTCCATTGTCCATTTTCTTCTTAAAGCCTTAGAATTTCTTGTTTTATTTTATCTTTCTCAACTTC
* * *
7936263 AAACCTCTTATCTACAAGTTCTAACTTTGAGGGCACATTATCCAACT-CTAGATTCACTAA-CTG
387 AAACCCCTTCTCTACAAGTTCTAACTTTGAGGGCACATTATCCAACTCCT-GATTCATTAATC-G
* * * *
7936326 GTGATGGTCCTTGAACATAGGCACAACTTCTTTGCTTTTCTTGGCTCTCCAGATCAAATATCCTT
450 GTGATGGTCCTTGAATATAGGCACAACCTCTTT-ATTTTCTTGGCTCTCTAGATCAAATAT-CTT
* * * * * *
7936391 GAGTAACTTTATCATTAATTGGTTCAGAGG-TCACCCTTTTGGGCTTCTTCCAAGCCTTGATCAT
513 GAGTGACTTTATCATTAAATGGTCCA-AGGTTCACCCTTCTGGGCTTCTTCTAAGCCTTGATTAT
* * *
7936455 GACATCAATTTTTTTGAAATGTTTTAGGTTTTTCATATAAGTAATCAAATTGGTTGAGCTTGTAT
577 GCCATCGATTTTTTTGAAATGTTTTAGGTTTTTCATATAAGCAATCAAATTGGTTGAGCTTGTAT
* * * *
7936520 GTCATAGGAATAGATTGTTCAGCTCTATATTATCTCCTTACTATCAGTAGTGCATAACCTGTGGA
642 GTCATAGGAATAAATTGTTCAACTCTATATTGTCTCCTTACCATCAGTAGTGCATAACCTGTGGA
* * * * *
7936585 CCTCC-ATAAGCCTAACAGTGGAACCTTTATCTCATCTCCACATTAATATAACAT-GGTTTCTTG
707 CC-CCTATAAGCCTAAAAATGGAACC-CTATCTCATCTCCACATTAATACAACATGGGTTT-TCG
* * * *
7936648 ACTCATCCATGGGACTAACCATTTCACATGATAAGCTATGAGCTT-TCGCAAT-ATTGATTCCCA
769 ACTCATCCATGGGACTAACCATTTCACCTGATAAGCCATGAACTTCT-GCAATAAAT-ATTCCCA
* * *
7936711 TTCTTTCTTGGTCTTCATCTCTGGTTATTCACTTTCATAAAACTTCTTGATAGGGTTTCGATTAT
832 TTCTTTCTTGGTCTTCACCTCTGGTCATTCACTTT--TAAAACTCCTTGATAGGGTTTCGATTAT
* * *
7936776 GAAAATAGAGTTTAGAAAAAA-TGTTCTTCCTACATTCAAAATGACTCTTCATTCATAAATACAA
895 GAAAATAGAGTTTA-AAAAAAGCGTTCTTCCTACATTCAAAATGGCTCTTCATCCATAAATACAA
7936840 TAATG
959 TAATG
* * * * * *
7936845 GCATATGGATGTACTATCTATGCATTTCATTTTCTTACTAAGCTTTAACATAATCATCCTCTATT
1 GCATTTGGATGTACTATCTAAGCATTTCATTTTCTTACTGAGCTTTGACATAATCAT-TTCCATT
* * * *
7936910 TAGGA-CATTCTCTTTTTAGCTTTTCATTCTCACAAGTTAAATTTATGTTGTTTATTTCTTTGGC
65 TAGAAGCATTCTCTTTTCAGCTTTTCATTCTCACAAGTCAAATTTATGTTATTTATTTCTTTGGC
* ** * * * * * * * *
7936974 CTACATCTATATATGCAA-TCTT-T-TACTTGTGGTAGCTCCATCAACTCCTTAAGGGCATTATT
130 TTGTATCTATATGTGTAATTTTTGTGTTCTTGTTGTAGCTCCATCAGCTTCTTAAGGGCATTATC
* * * * *
7937036 ACGTTATTTGATAACATTTTGAGTCTTGCT-TTTGCTCTTTAATATCTTGTGTTGTTGATCTTTA
195 ATGTTTTTTGATAACCTTTTAAGTCTTGCTCTTAG-TCTTTAATATCTTGTGTTGTTGATCTTTA
* * * *
7937100 ACTATTATGTGGCACTCCTTAAAAATCTTATGGACTTGAACTTCTAACTTTTTTATTTTGTCTTT
259 ACTATCATGTTGCACTCCTTAGAAATCTTATGGACTTGAACTTCTAACTTTTTTACTTTGTCTTT
* * * * * *
7937165 TCATTGTCCATTTTCTTCTTGAAGTCTTAGAATTT-TTATTTTATTTTATATTTCTCGACTTCAA
324 CCATTGTCCATTTTCTTCTTAAAGCCTTAGAATTTCTTGTTTTATTTTATCTTTCTCAACTTCAA
* * * * ** * *
7937229 ACCCCTTCTCTACAAGTTCAAACTTCGAGGGCATATTTTTTAACTCCTGATTCACTT-ATTGG-C
389 ACCCCTTCTCTACAAGTTCTAACTTTGAGGGCACATTATCCAACTCCTGATTCA-TTAATCGGTG
* * *
7937292 AGTGGTCCTTGAATGTAGGCACAACCT-TTATGCTTTTTTTGGCTCT-TCAGATCAAATATTCTT
453 A-TGGTCCTTGAATATAGGCACAACCTCTT-T-ATTTTCTTGGCTCTCT-AGATCAAATA-TCTT
* * * * * * * *
7937355 GAGTGACTTTATCATTAAATAGTCTAGGGTTCACCTTTCTGGGTTTATTCTAAGCTTTAATTATG
513 GAGTGACTTTATCATTAAATGGTCCAAGGTTCACCCTTCTGGGCTTCTTCTAAGCCTTGATTATG
* * *
7937420 CCATTGATTTTTTTGAAATGTTTTAAGTTTTTCATATAAGCAATCAAATTGGTTGAGCTTGTATA
578 CCATCGATTTTTTTGAAATGTTTTAGGTTTTTCATATAAGCAATCAAATTGGTTGAGCTTGTATG
* ** * * * * ** *
7937485 TCATAGGAATAAATTGTTCAACTCCATGCTGTCTCTTTATCATTAGTTGTATATAACTTGTGGAC
643 TCATAGGAATAAATTGTTCAACTCTATATTGTCTCCTTACCATCAGTAGTGCATAACCTGTGGAC
* ** *
7937550 CCTTATAAGTTTAAAAATGGAACCCCTATCTTATCTCCACATTAATACAACATGGGTTTTCGACT
708 CCCTATAAGCCTAAAAATGGAA-CCCTATCTCATCTCCACATTAATACAACATGGGTTTTCGACT
* * * * *
7937615 CATCTATAGGACTAATCATTTCACCTGATAAGCCGTGAACTTCTGCAATAAATATTTCCATTCTT
772 CATCCATGGGACTAACCATTTCACCTGATAAGCCATGAACTTCTGCAATAAATATTCCCATTCTT
* * * * *
7937680 TCTTAGTCTTCACCTTTAGTCATTCACTTTTACCAAACTCCTTGATAGGGTTTCAATTGTGAAAA
837 TCTTGGTCTTCACCTCTGGTCATTCACTTTTA--AAACTCCTTGATAGGGTTTCGATTATGAAAA
* *
7937745 TAGAGTTTAAAAAAAGCGCTCTTCCTACATTTAAAATGGCTCTTCATCCATAAATACAATAATG
900 TAGAGTTTAAAAAAAGCGTTCTTCCTACATTCAAAATGGCTCTTCATCCATAAATACAATAATG
* *
7937809 GCATTTGGATGTACTCTCTAAGCATTTAATTTTCTTACTGAGCTTTGACATAATCATTATCCATT
1 GCATTTGGATGTACTATCTAAGCATTTCATTTTCTTACTGAGCTTTGACATAATCATT-TCCATT
* * * * *
7937874 TAGAAGCATTCTCTTTTCAGCTTTTCATTCTCATAAGTCAAATCTATGTTATTAATTTTTTTGAC
65 TAGAAGCATTCTCTTTTCAGCTTTTCATTCTCACAAGTCAAATTTATGTTATTTATTTCTTTGGC
* *
7937939 TTGTATCTATATGTGTAACTTTTTGTGTTCTTCTTGTAGCTCCATCAGCTTCTTATGGGCATTAT
130 TTGTATCTATATGTGTAA-TTTTTGTGTTCTTGTTGTAGCTCCATCAGCTTCTTAAGGGCATTAT
* * * *
7938004 CATGTTTTTTAATAACCTTTTAAGTCTTGCTCTCAGTCTTTAATATCTTGTGTTATTGATTTTTA
194 CATGTTTTTTGATAACCTTTTAAGTCTTGCTCTTAGTCTTTAATATCTTGTGTTGTTGATCTTTA
* ** * * * *
7938069 ACTATCATGTTACACTTTTTAGAAATTTTATGGACTTGAACTTTTAACTTTTCTGCTTTGTCTTT
259 ACTATCATGTTGCACTCCTTAGAAATCTTATGGACTTGAACTTCTAACTTTTTTACTTTGTCTTT
* * *
7938134 CCATTGTCCATTTTCTTCCTAAAGCCTTAAAATTTCTTGTTTTATTTTATCTTTCTCAACTTTAA
324 CCATTGTCCATTTTCTTCTTAAAGCCTTAGAATTTCTTGTTTTATTTTATCTTTCTCAACTTCAA
** *
7938199 ACCCCTTCTCTGTAAGTTCTAACTTTGAAGGCACATTATCCAACTCCTGATTCATTAATCGGTGA
389 ACCCCTTCTCTACAAGTTCTAACTTTGAGGGCACATTATCCAACTCCTGATTCATTAATCGGTGA
** * * * *
7938264 TGGTCCTTGAATATAAACGCAACCTCTTTATTTCTCTTGGCTCTCTTGATCAAATATCGATGAAT
454 TGGTCCTTGAATATAGGCACAACCTCTTTATTT-TCTTGGCTCTCTAGATCAAATATC-TTGAGT
* *
7938329 GACTTTATCATTAAATGGTCCAAGGTTCACCCTCCTAGGCTTCTTCTAAGCCTTGATTATGCCAT
517 GACTTTATCATTAAATGGTCCAAGGTTCACCCTTCTGGGCTTCTTCTAAGCCTTGATTATGCCAT
* * *
7938394 CGATATTTTTGAAATGTTTTAGGTTCTTCATATAAGCAATCAAATTGGTTGAGCTTGAATGTCAT
582 CGATTTTTTTGAAATGTTTTAGGTTTTTCATATAAGCAATCAAATTGGTTGAGCTTGTATGTCAT
* * *** ** *
7938459 AGAAATAAATTGTTTAACTCTATATTGTCTCCTTACCATCAACGGTGCATAACCCATAGACCCCT
647 AGGAATAAATTGTTCAACTCTATATTGTCTCCTTACCATCAGTAGTGCATAACCTGTGGACCCCT
* * *
7938524 ATAAGCCTAAAAATGGAACTCCTATCTCATCTCTACATTAAGACAACATGGGTTCTCGACTCATC
712 ATAAGCCTAAAAATGGAAC-CCTATCTCATCTCCACATTAATACAACATGGGTTTTCGACTCATC
* * *
7938589 CATGGGACTAACCATTTCACCTGATAAGCCAT-AAGCTTCTGCAATAGATATTCCCATTTTTTAT
776 CATGGGACTAACCATTTCACCTGATAAGCCATGAA-CTTCTGCAATAAATATTCCCATTCTTTCT
* *
7938653 TGGTCTTCACCTCTGGTCATTCACTTTCGTAAAACTCCTTGATAAGGTTTCGATTATGAAAAAAG
840 TGGTCTTCACCTCTGGTCATTCACTTT--TAAAACTCCTTGATAGGGTTTCGATTATGAAAATAG
* * * * * *
7938718 AGCTTAGAAAAAGCGTTATTCCTACATTCAAAATAGCTCTTCATCTACAAATACAATAATG
903 AGTTTAAAAAAAGCGTTCTTCCTACATTCAAAATGGCTCTTCATCCATAAATACAATAATG
7938779 GCAT
1 GCAT
7938783 GCACCCCAAA
Statistics
Matches: 1623, Mismatches: 277, Indels: 75
0.82 0.14 0.04
Matches are distributed among these distances:
962 2 0.00
963 15 0.01
964 687 0.42
965 101 0.06
966 3 0.00
967 5 0.00
968 65 0.04
969 236 0.15
970 503 0.31
971 4 0.00
972 2 0.00
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (963 bp):
GCATTTGGATGTACTATCTAAGCATTTCATTTTCTTACTGAGCTTTGACATAATCATTTCCATTT
AGAAGCATTCTCTTTTCAGCTTTTCATTCTCACAAGTCAAATTTATGTTATTTATTTCTTTGGCT
TGTATCTATATGTGTAATTTTTGTGTTCTTGTTGTAGCTCCATCAGCTTCTTAAGGGCATTATCA
TGTTTTTTGATAACCTTTTAAGTCTTGCTCTTAGTCTTTAATATCTTGTGTTGTTGATCTTTAAC
TATCATGTTGCACTCCTTAGAAATCTTATGGACTTGAACTTCTAACTTTTTTACTTTGTCTTTCC
ATTGTCCATTTTCTTCTTAAAGCCTTAGAATTTCTTGTTTTATTTTATCTTTCTCAACTTCAAAC
CCCTTCTCTACAAGTTCTAACTTTGAGGGCACATTATCCAACTCCTGATTCATTAATCGGTGATG
GTCCTTGAATATAGGCACAACCTCTTTATTTTCTTGGCTCTCTAGATCAAATATCTTGAGTGACT
TTATCATTAAATGGTCCAAGGTTCACCCTTCTGGGCTTCTTCTAAGCCTTGATTATGCCATCGAT
TTTTTTGAAATGTTTTAGGTTTTTCATATAAGCAATCAAATTGGTTGAGCTTGTATGTCATAGGA
ATAAATTGTTCAACTCTATATTGTCTCCTTACCATCAGTAGTGCATAACCTGTGGACCCCTATAA
GCCTAAAAATGGAACCCTATCTCATCTCCACATTAATACAACATGGGTTTTCGACTCATCCATGG
GACTAACCATTTCACCTGATAAGCCATGAACTTCTGCAATAAATATTCCCATTCTTTCTTGGTCT
TCACCTCTGGTCATTCACTTTTAAAACTCCTTGATAGGGTTTCGATTATGAAAATAGAGTTTAAA
AAAAGCGTTCTTCCTACATTCAAAATGGCTCTTCATCCATAAATACAATAATG
Found at i:7940045 original size:14 final size:16
Alignment explanation
Indices: 7940014--7940064 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 16
7940004 TTATGCATAT
* *
7940014 AATAAGTGAATGA-TA
1 AATAAATGAATAACTA
*
7940029 AATATATGAA-AAC-A
1 AATAAATGAATAACTA
7940043 AATAAATGAATAACTA
1 AATAAATGAATAACTA
7940059 AATAAA
1 AATAAA
7940065 ATATAAGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
14 11 0.38
15 11 0.38
16 7 0.24
ACGTcount: A:0.63, C:0.04, G:0.10, T:0.24
Consensus pattern (16 bp):
AATAAATGAATAACTA
Found at i:7941468 original size:21 final size:22
Alignment explanation
Indices: 7941442--7941519 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 22
7941432 TCAACCCAAT
7941442 CCTAGAAACTT-AAACTTCAAA
1 CCTAGAAACTTCAAACTTCAAA
*
7941463 CCTAGAAA-TTCAAACCT-AAA
1 CCTAGAAACTTCAAACTTCAAA
*
7941483 CCCAG-AACTTCAAACTCTCAAA
1 CCTAGAAACTTCAAACT-TCAAA
7941505 CCTAGAAA-TTCAAAC
1 CCTAGAAACTTCAAAC
7941520 CACTCTCAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
19 2 0.04
20 16 0.33
21 14 0.29
22 14 0.29
23 2 0.04
ACGTcount: A:0.46, C:0.28, G:0.05, T:0.21
Consensus pattern (22 bp):
CCTAGAAACTTCAAACTTCAAA
Found at i:7941819 original size:3 final size:3
Alignment explanation
Indices: 7941811--7941854 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
7941801 AAAATGAAAG
**
7941811 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT ACC AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7941855 GACAGTTGAC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7942826 original size:18 final size:19
Alignment explanation
Indices: 7942799--7942847 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
7942789 CTTACTTTTA
*
7942799 TTTTTCTTTTAAAAT-CAGC
1 TTTTT-TTTTAAAATGCAAC
7942818 TTTTTTTTT-AAATGGCAAC
1 TTTTTTTTTAAAAT-GCAAC
7942837 TTTTTTTTTAA
1 TTTTTTTTTAA
7942848 TTTAGGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 4 0.15
18 4 0.15
19 17 0.65
20 1 0.04
ACGTcount: A:0.24, C:0.10, G:0.06, T:0.59
Consensus pattern (19 bp):
TTTTTTTTTAAAATGCAAC
Found at i:7943162 original size:18 final size:18
Alignment explanation
Indices: 7943139--7943173 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7943129 ATGTTTATCC
*
7943139 TTTTTTTT-AAAAGAAAT
1 TTTTTTTTGAAAAAAAAT
7943156 TTTTTTTTGAAAAAAAAT
1 TTTTTTTTGAAAAAAAAT
7943174 AGAAGGTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (18 bp):
TTTTTTTTGAAAAAAAAT
Found at i:7946256 original size:28 final size:28
Alignment explanation
Indices: 7946225--7946280 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
7946215 TATTGCAAAA
* * *
7946225 GTCAAAATCTTATACAAATATTAAAATT
1 GTCAAAATCCTAAACAAAGATTAAAATT
*
7946253 GTCAAAATCCTAAACAAAGATTGAAATT
1 GTCAAAATCCTAAACAAAGATTAAAATT
7946281 TACTTGGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.30
Consensus pattern (28 bp):
GTCAAAATCCTAAACAAAGATTAAAATT
Found at i:7948192 original size:20 final size:20
Alignment explanation
Indices: 7948154--7948192 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7948144 TTTTGAACTA
*
7948154 TGGCAATTGACTCTTCCTTG
1 TGGCAATTGACTCTGCCTTG
*
7948174 TGGCAATTGACTGTGCCTT
1 TGGCAATTGACTCTGCCTT
7948193 TGTAATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (20 bp):
TGGCAATTGACTCTGCCTTG
Found at i:7949694 original size:15 final size:15
Alignment explanation
Indices: 7949674--7949705 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7949664 CTTTAGTATC
7949674 TATCTTAATAATCTA
1 TATCTTAATAATCTA
7949689 TATCTTAATAATCTA
1 TATCTTAATAATCTA
7949704 TA
1 TA
7949706 AAATTAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (15 bp):
TATCTTAATAATCTA
Found at i:7953832 original size:31 final size:30
Alignment explanation
Indices: 7953782--7953840 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
7953772 CTTTTTTATT
*
7953782 TTTATTTTTATTTTCATTTTTTAGAAAATAG
1 TTTATTTTTATTTTCATTTTCTA-AAAATAG
*
7953813 TTTATTTTGT-TTTTTATTTTCTAAAAAT
1 TTTATTTT-TATTTTCATTTTCTAAAAAT
7953841 GTATTTGGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.20
31 19 0.76
32 1 0.04
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.64
Consensus pattern (30 bp):
TTTATTTTTATTTTCATTTTCTAAAAATAG
Found at i:7955795 original size:32 final size:32
Alignment explanation
Indices: 7955726--7955805 Score: 78
Period size: 32 Copynumber: 2.5 Consensus size: 32
7955716 AACATTCAAG
* *
7955726 AATAAATTA-TATTTTAATAATAAAATTTAAT
1 AATAAAATATTATATTAATAATAAAATTTAAT
*
7955757 ATTAAAATATTATATTAAT-ATAAAATACTTAA-
1 AATAAAATATTATATTAATAATAAAAT--TTAAT
7955789 AATAAAACTATT-TATTA
1 AATAAAA-TATTATATTA
7955806 TTCTTTATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
31 14 0.34
32 19 0.46
33 8 0.20
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (32 bp):
AATAAAATATTATATTAATAATAAAATTTAAT
Found at i:7955897 original size:21 final size:21
Alignment explanation
Indices: 7955871--7955910 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7955861 TTTTTATTAA
7955871 TATTAAAATAATAATATTTAT
1 TATTAAAATAATAATATTTAT
* *
7955892 TATTAAAATATTTATATTT
1 TATTAAAATAATAATATTT
7955911 TATATTGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TATTAAAATAATAATATTTAT
Found at i:7955899 original size:44 final size:45
Alignment explanation
Indices: 7955741--7955914 Score: 142
Period size: 44 Copynumber: 3.8 Consensus size: 45
7955731 ATTATATTTT
* * *
7955741 AATAATAAAATTTAATATTAAAATATTATATTAATATAAAATACTTAA
1 AATAATAATATTTATTATTAAAATATTATATT--T-TATAATACTTAA
*** *
7955789 AATAA-AACTATTTATTATTCTTTATATTATATTTTA-AATATTTAA
1 AATAATAA-TATTTATTATT-AAAATATTATATTTTATAATACTTAA
* * * * *
7955834 AACAGTATTA-CTATTTTTAAAATATTAT-TTTTATTAATA-TTAA
1 AATAATAATATTTATTATTAAAATATTATATTTTA-TAATACTTAA
7955877 AATAATAATATTTATTATTAAAATATTTATATTTTATA
1 AATAATAATATTTATTATTAAAATA-TTATATTTTATA
7955915 TTGAAGTATC
Statistics
Matches: 99, Mismatches: 19, Indels: 19
0.72 0.14 0.14
Matches are distributed among these distances:
42 5 0.05
43 18 0.18
44 22 0.22
45 19 0.19
46 8 0.08
47 3 0.03
48 14 0.14
49 10 0.10
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.49
Consensus pattern (45 bp):
AATAATAATATTTATTATTAAAATATTATATTTTATAATACTTAA
Found at i:7955916 original size:21 final size:20
Alignment explanation
Indices: 7955865--7955916 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
7955855 ATATTATTTT
*
7955865 TATTAATATTAAAATAATAA
1 TATTTATATTAAAATAATAA
* *
7955885 TATTTATTATTAAAATATTTA
1 TATTTA-TATTAAAATAATAA
7955906 TATTTTATATT
1 TA-TTTATATT
7955917 GAAGTATCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.19
21 18 0.67
22 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TATTTATATTAAAATAATAA
Found at i:7956095 original size:29 final size:30
Alignment explanation
Indices: 7956063--7956125 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
7956053 TTCATAGTAA
* * *
7956063 AAAATTATTATTAT-ATATTATTTATTATT
1 AAAATTAATAATATAATACTATTTATTATT
7956092 AAAA-TAATAATATAATACTATTTATTATT
1 AAAATTAATAATATAATACTATTTATTATT
*
7956121 GAAAT
1 AAAAT
7956126 ACTAAAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (30 bp):
AAAATTAATAATATAATACTATTTATTATT
Found at i:7956255 original size:19 final size:17
Alignment explanation
Indices: 7956222--7956258 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 17
7956212 TTCAATTAAA
7956222 ATTAAATAAAATATTTT
1 ATTAAATAAAATATTTT
7956239 ATTAATATAATAATATTTT
1 ATTAA-ATAA-AATATTTT
7956258 A
1 A
7956259 ATTCAAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
19 9 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTAAATAAAATATTTT
Found at i:7956614 original size:18 final size:20
Alignment explanation
Indices: 7956581--7956635 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 20
7956571 TACCTTATTT
7956581 TTTATTGATC-AATAAATT-A
1 TTTATT-ATCAAATAAATTAA
7956600 TTT-TTCAT-AAATAAATTAA
1 TTTATT-ATCAAATAAATTAA
7956619 TTTATTATCAAATAAAT
1 TTTATTATCAAATAAAT
7956636 ACATAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 12 0.39
19 9 0.29
20 10 0.32
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.47
Consensus pattern (20 bp):
TTTATTATCAAATAAATTAA
Found at i:7958447 original size:36 final size:36
Alignment explanation
Indices: 7958397--7958468 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
7958387 CTTCCCCTCT
*
7958397 CTAACTGTTCCCTTTAACAAATTTTTAATGACTTAG
1 CTAACTGTTACCTTTAACAAATTTTTAATGACTTAG
* *
7958433 CTAACTGTTACCTTTAACAGATTTTTGATGACTTAG
1 CTAACTGTTACCTTTAACAAATTTTTAATGACTTAG
7958469 ATTTACCTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (36 bp):
CTAACTGTTACCTTTAACAAATTTTTAATGACTTAG
Found at i:7968488 original size:97 final size:98
Alignment explanation
Indices: 7968373--7968958 Score: 833
Period size: 97 Copynumber: 5.9 Consensus size: 98
7968363 AAATTTGAAA
* * *
7968373 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTCAAGAAGA-AATTTTAA
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAA
*
7968437 AGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
66 AGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
* *
7968470 AAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAATTTTAA
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAA
*
7968535 AGTTGTGGAACCTCTGCTGAGAGGAGCTTTT-C
66 AGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
*
7968567 AAGATGAGATTTTTTAAAGTTGTGGAACCTCTGCTGAGAGGAGC-TTTTCAAGATGAGAATTTTA
1 AAGATGAGA-TTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTA
7968631 AAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
65 AAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
* *
7968665 AAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAATTTTTA
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAA-TTTTA
*
7968730 AAGTTGTGGAACCTCTGCTGAGAGGAGCTTTT-C
65 AAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
*
7968763 AAGATGAGATTTTTTAAAGTTGTGGAACCTCTGCTGAGAGGAGC-TTTTCAAGATGAGAATTTTA
1 AAGATGAGA-TTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTA
7968827 AAGTTGTGGAGCCTCTG-TGGAAAACAGAGGAGCTTTTCC
65 AAGTTGTGGAGCCTCTGCT-G-----AGAGGAGCTTTTCC
* * * *
7968866 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTACTGAAAATAGAAGAGCTTTTTCAAGATGAGAAT
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTG-----AGAGGAGCTTTTTCAAGATGAGAAT
* * *
7968931 TTTAAAGTTGTTGAGCTTTTGCTGAGAG
61 TTTAAAGTTGTGGAGCCTCTGCTGAGAG
7968959 CAGAGGAGCT
Statistics
Matches: 442, Mismatches: 27, Indels: 34
0.88 0.05 0.07
Matches are distributed among these distances:
96 1 0.00
97 165 0.37
98 117 0.26
99 68 0.15
102 34 0.08
103 14 0.03
107 7 0.02
108 35 0.08
109 1 0.00
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.33
Consensus pattern (98 bp):
AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAA
AGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
Found at i:7968503 original size:49 final size:49
Alignment explanation
Indices: 7968373--7968958 Score: 815
Period size: 49 Copynumber: 11.8 Consensus size: 49
7968363 AAATTTGAAA
* *
7968373 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTC
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
* *
7968422 AAGAAGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
* *
7968470 AAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
*
7968519 AAGATGAGAATTTTAAAGTTGTGGAACCTCTGCTGAGAGGAGCTTTT-C
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
* *
7968567 AAGATGAGATTTTTTAAAGTTGTGGAACCTCTGCTGAGAGGAGCTTTT-C
1 AAGATGAGA-ATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
7968616 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
* *
7968665 AAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
*
7968714 AAGATGAGAATTTTTAAAGTTGTGGAACCTCTGCTGAGAGGAGCTTTT-C
1 AAGATGAGAA-TTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
* *
7968763 AAGATGAGATTTTTTAAAGTTGTGGAACCTCTGCTGAGAGGAGCTTTT-C
1 AAGATGAGA-ATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
7968812 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTG-TGGAAAACAGAGGAGCTTTTCC
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCT-G-----AGAGGAGCTTTTCC
* * * *
7968866 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTACTGAAAATAGAAGAGCTTTTTC
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTG-----AGAGGAGCTTTTCC
* * *
7968920 AAGATGAGAATTTTAAAGTTGTTGAGCTTTTGCTGAGAG
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAG
7968959 CAGAGGAGCT
Statistics
Matches: 495, Mismatches: 29, Indels: 26
0.90 0.05 0.05
Matches are distributed among these distances:
47 1 0.00
48 112 0.23
49 254 0.51
50 35 0.07
53 12 0.02
54 80 0.16
55 1 0.00
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.33
Consensus pattern (49 bp):
AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCC
Found at i:7968619 original size:146 final size:147
Alignment explanation
Indices: 7968373--7968958 Score: 815
Period size: 146 Copynumber: 3.9 Consensus size: 147
7968363 AAATTTGAAA
* *
7968373 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTCAAGA--AGAAATTTTA
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAAATTTTA
* * * *
7968436 AAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGATTTTTAAAGTTGTTGAGCCTCT
66 AAGTTGTGGAACCTCTGCTGAGAGGAGCTTTT-CAAGATGAGAATTTTAAAGTTGTGGAGCCTCT
7968501 GCTGAGAGGAGCTTTTCC
130 GCTGAGAGGAGCTTTTCC
* **
7968519 AAGATGAGAATTTTAAAGTTGTGGAACCTCTGCTGAGAGGAGCTTTT-CAAGATGAGATTTTTTA
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAAATTTTA
7968583 AAGTTGTGGAACCTCTGCTGAGAGGAGCTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCCTCTG
66 AAGTTGTGGAACCTCTGCTGAGAGGAGCTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCCTCTG
7968648 CTGAGAGGAGCTTTTCC
131 CTGAGAGGAGCTTTTCC
* * *
7968665 AAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAATTTTTA
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAAATTTTA
* *
7968730 AAGTTGTGGAACCTCTGCTGAGAGGAGCTTTTCAAGATGAGATTTTTTAAAGTTGTGGAACCTCT
66 AAGTTGTGGAACCTCTGCTGAGAGGAGCTTTTCAAGATGAGA-ATTTTAAAGTTGTGGAGCCTCT
7968795 GCTGAGAGGAGCTTTT-C
130 GCTGAGAGGAGCTTTTCC
7968812 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTG-TGGAAAACAGAGGAGCTTTTCCAAGATGAG-A
1 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCT-G-----AGAGGAGCTTTTCCAAGATGAGAA
* * * *
7968875 ATTTTAAAGTTGTTGAGCCTCTACTGAAAATAGAAGAGCTTTTTCAAGATGAGAATTTTAAAGTT
60 ATTTTAAAGTTGTGGAACCTCTGCTG-----AGAGGAGC-TTTTCAAGATGAGAATTTTAAAGTT
* * *
7968940 GTTGAGCTTTTGCTGAGAG
119 GTGGAGCCTCTGCTGAGAG
7968959 CAGAGGAGCT
Statistics
Matches: 398, Mismatches: 26, Indels: 22
0.89 0.06 0.05
Matches are distributed among these distances:
145 5 0.01
146 138 0.35
147 128 0.32
148 36 0.09
151 23 0.06
152 22 0.06
156 32 0.08
157 14 0.04
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.33
Consensus pattern (147 bp):
AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAAATTTTA
AAGTTGTGGAACCTCTGCTGAGAGGAGCTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCCTCTG
CTGAGAGGAGCTTTTCC
Found at i:7969150 original size:22 final size:22
Alignment explanation
Indices: 7969122--7969170 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
7969112 CCATTTTATT
7969122 AATAAACAAAACAAAA-AAACAA
1 AATAAAC-AAACAAAAGAAACAA
*
7969144 AATAAACAAACAAAAGAAACAG
1 AATAAACAAACAAAAGAAACAA
7969166 AATAA
1 AATAA
7969171 GATAGAAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.78, C:0.12, G:0.04, T:0.06
Consensus pattern (22 bp):
AATAAACAAACAAAAGAAACAA
Found at i:7969163 original size:13 final size:13
Alignment explanation
Indices: 7969125--7969164 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
7969115 TTTTATTAAT
*
7969125 AAACAAAACAAAA
1 AAACAAAACAAAC
*
7969138 AAACAAAATAAAC
1 AAACAAAACAAAC
*
7969151 AAACAAAAGAAAC
1 AAACAAAACAAAC
7969164 A
1 A
7969165 GAATAAGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.80, C:0.15, G:0.03, T:0.03
Consensus pattern (13 bp):
AAACAAAACAAAC
Found at i:7969244 original size:12 final size:12
Alignment explanation
Indices: 7969207--7969257 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
7969197 GCCGCTGTCG
7969207 CCAG-CCCCCGA
1 CCAGCCCCCCGA
* ** *
7969218 CCAACTACCCTA
1 CCAGCCCCCCGA
7969230 CCAGCCCCCCGA
1 CCAGCCCCCCGA
*
7969242 CCAGCCTCCCGA
1 CCAGCCCCCCGA
7969254 CCAG
1 CCAG
7969258 TCACCCTACA
Statistics
Matches: 30, Mismatches: 9, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
11 3 0.10
12 27 0.90
ACGTcount: A:0.22, C:0.59, G:0.14, T:0.06
Consensus pattern (12 bp):
CCAGCCCCCCGA
Found at i:7969256 original size:24 final size:23
Alignment explanation
Indices: 7969207--7969257 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
7969197 GCCGCTGTCG
*
7969207 CCAGCCCCCGACCAACTACCCTA
1 CCAGCCCCCGACCAACTACCCGA
*
7969230 CCAGCCCCCCGACCAGCCT-CCCGA
1 CCAG-CCCCCGACCA-ACTACCCGA
7969254 CCAG
1 CCAG
7969258 TCACCCTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 4 0.17
24 18 0.75
25 2 0.08
ACGTcount: A:0.22, C:0.59, G:0.14, T:0.06
Consensus pattern (23 bp):
CCAGCCCCCGACCAACTACCCGA
Found at i:7970074 original size:30 final size:30
Alignment explanation
Indices: 7970034--7970129 Score: 111
Period size: 30 Copynumber: 3.2 Consensus size: 30
7970024 CGGTCTGACT
* *
7970034 GAACCAGAACCGAATCGCCCAGACCGAACC
1 GAACCGGAACCGAACCGCCCAGACCGAACC
* *
7970064 GAACCGGAACCGAACCGCCTAGACTGAACC
1 GAACCGGAACCGAACCGCCCAGACCGAACC
* * * * *
7970094 GAACCGGTACTGGACCGTCCAAACCGAACC
1 GAACCGGAACCGAACCGCCCAGACCGAACC
7970124 GAACCG
1 GAACCG
7970130 TCGAACCAAA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 55 1.00
ACGTcount: A:0.33, C:0.38, G:0.23, T:0.06
Consensus pattern (30 bp):
GAACCGGAACCGAACCGCCCAGACCGAACC
Found at i:7972343 original size:15 final size:15
Alignment explanation
Indices: 7972323--7972366 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7972313 TTTAAACTCT
*
7972323 TAAATCTAAACCCCC
1 TAAATCCAAACCCCC
**
7972338 TAAATCCAAAATCCC
1 TAAATCCAAACCCCC
7972353 TAAAATCCAAACCC
1 T-AAATCCAAACCC
7972367 TTAAATTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (15 bp):
TAAATCCAAACCCCC
Found at i:7972371 original size:15 final size:16
Alignment explanation
Indices: 7972227--7972363 Score: 93
Period size: 16 Copynumber: 8.6 Consensus size: 16
7972217 AAAACCCTTA
*
7972227 AAAATTCAAAATCCCT
1 AAAATCCAAAATCCCT
*
7972243 TAAATCCAAAATCCCT
1 AAAATCCAAAATCCCT
*
7972259 AAAATCC-AAACCTCCT
1 AAAATCCAAAATC-CCT
* *
7972275 AAAATCCAAAACCCCCCC
1 AAAATCCAAAA--TCCCT
7972293 AAAATCCAAAATCCC-
1 AAAATCCAAAATCCCT
* *** *
7972308 AAACTTTTAAA-CTCT
1 AAAATCCAAAATCCCT
* * **
7972323 TAAATCTAAACCCCCT
1 AAAATCCAAAATCCCT
7972339 -AAATCCAAAATCCCT
1 AAAATCCAAAATCCCT
7972354 AAAATCCAAA
1 AAAATCCAAA
7972364 CCCTTAAATT
Statistics
Matches: 94, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
14 2 0.02
15 29 0.31
16 45 0.48
17 3 0.03
18 13 0.14
19 2 0.02
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (16 bp):
AAAATCCAAAATCCCT
Found at i:7972406 original size:14 final size:15
Alignment explanation
Indices: 7972373--7972435 Score: 60
Period size: 14 Copynumber: 4.3 Consensus size: 15
7972363 ACCCTTAAAT
7972373 TAAAACTCCAAA-CC
1 TAAAACTCCAAACCC
7972387 TCAAAAC-CCAAACCC
1 T-AAAACTCCAAACCC
**
7972402 TAAAATCTCCAAACTT
1 TAAAA-CTCCAAACCC
*
7972418 TAAAA-TCAAAACCC
1 TAAAACTCCAAACCC
7972432 TAAA
1 TAAA
7972436 CCTTCCATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
14 20 0.50
15 9 0.22
16 11 0.28
ACGTcount: A:0.51, C:0.32, G:0.00, T:0.17
Consensus pattern (15 bp):
TAAAACTCCAAACCC
Found at i:7972414 original size:30 final size:29
Alignment explanation
Indices: 7972373--7972435 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 29
7972363 ACCCTTAAAT
*
7972373 TAAAACTCCAAACCTCAAAACCCAAACCC
1 TAAAACTCCAAACCTCAAAACCAAAACCC
* * *
7972402 TAAAATCTCCAAACTTTAAAATCAAAACCC
1 TAAAA-CTCCAAACCTCAAAACCAAAACCC
7972432 TAAA
1 TAAA
7972436 CCTTCCATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 5 0.17
30 24 0.83
ACGTcount: A:0.51, C:0.32, G:0.00, T:0.17
Consensus pattern (29 bp):
TAAAACTCCAAACCTCAAAACCAAAACCC
Found at i:7976090 original size:20 final size:20
Alignment explanation
Indices: 7976065--7976123 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
7976055 GGTCAAATTT
7976065 ATGGATTGTACAAATGATTC
1 ATGGATTGTACAAATGATTC
* *
7976085 ATGGATTGCACAAATAATTC
1 ATGGATTGTACAAATGATTC
*
7976105 ATGAATTGTACAAATGATT
1 ATGGATTGTACAAATGATT
7976124 TATTATCTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (20 bp):
ATGGATTGTACAAATGATTC
Found at i:7983571 original size:2 final size:2
Alignment explanation
Indices: 7983566--7983601 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7983556 ACATCCTTGA
7983566 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7983602 ACTTAAATCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7985169 original size:5 final size:5
Alignment explanation
Indices: 7985159--7985210 Score: 61
Period size: 5 Copynumber: 10.4 Consensus size: 5
7985149 CTTACACTTG
* * *
7985159 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCCA TTTCT TTT-T CTTAT TTTCT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTT-CT TTTCT TTTCT TTTCT TTTCT
7985209 TT
1 TT
7985211 CAGTGTCTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
4 3 0.08
5 33 0.82
6 4 0.10
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTCT
Found at i:7986276 original size:18 final size:19
Alignment explanation
Indices: 7986253--7986297 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
7986243 AAGGTTTTCT
7986253 TACTTTGACTTGAAATT-C
1 TACTTTGACTTGAAATTCC
* * *
7986271 TACTTTAACTTGGATTTCC
1 TACTTTGACTTGAAATTCC
7986290 TACTTTGA
1 TACTTTGA
7986298 TTAGGAACAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (19 bp):
TACTTTGACTTGAAATTCC
Found at i:7986294 original size:19 final size:19
Alignment explanation
Indices: 7986248--7986295 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
7986238 TTAAGAAGGT
* *
7986248 TTTCTTACTTTGACTTGAA
1 TTTCCTACTTTAACTTGAA
* *
7986267 ATT-CTACTTTAACTTGGA
1 TTTCCTACTTTAACTTGAA
7986285 TTTCCTACTTT
1 TTTCCTACTTT
7986296 GATTAGGAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.21, C:0.19, G:0.08, T:0.52
Consensus pattern (19 bp):
TTTCCTACTTTAACTTGAA
Found at i:7987146 original size:25 final size:23
Alignment explanation
Indices: 7987112--7987163 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 23
7987102 CTATATGTTC
7987112 TTAAGTTTAATT-AATTGAATTTGG
1 TTAAGTTTAATTAAATT-AATTT-G
7987136 TTAAGATTTAATTAAATTAATTTG
1 TTAAG-TTTAATTAAATTAATTTG
7987160 TTAA
1 TTAA
7987164 ATTACATGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 10 0.38
25 12 0.46
26 4 0.15
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (23 bp):
TTAAGTTTAATTAAATTAATTTG
Found at i:7987200 original size:140 final size:140
Alignment explanation
Indices: 7987046--7987326 Score: 562
Period size: 140 Copynumber: 2.0 Consensus size: 140
7987036 ATGTTAATGC
7987046 TTTGGCATTGATTTAATTTATAATTATCTAAGTTAGTTGAGATTAATTTGAGACGACTATATGTT
1 TTTGGCATTGATTTAATTTATAATTATCTAAGTTAGTTGAGATTAATTTGAGACGACTATATGTT
7987111 CTTAAGTTTAATTAATTGAATTTGGTTAAGATTTAATTAAATTAATTTGTTAAATTACATGCTAC
66 CTTAAGTTTAATTAATTGAATTTGGTTAAGATTTAATTAAATTAATTTGTTAAATTACATGCTAC
7987176 TTAGGTTGTT
131 TTAGGTTGTT
7987186 TTTGGCATTGATTTAATTTATAATTATCTAAGTTAGTTGAGATTAATTTGAGACGACTATATGTT
1 TTTGGCATTGATTTAATTTATAATTATCTAAGTTAGTTGAGATTAATTTGAGACGACTATATGTT
7987251 CTTAAGTTTAATTAATTGAATTTGGTTAAGATTTAATTAAATTAATTTGTTAAATTACATGCTAC
66 CTTAAGTTTAATTAATTGAATTTGGTTAAGATTTAATTAAATTAATTTGTTAAATTACATGCTAC
7987316 TTAGGTTGTT
131 TTAGGTTGTT
7987326 T
1 T
7987327 AGATTAGTTT
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
140 141 1.00
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (140 bp):
TTTGGCATTGATTTAATTTATAATTATCTAAGTTAGTTGAGATTAATTTGAGACGACTATATGTT
CTTAAGTTTAATTAATTGAATTTGGTTAAGATTTAATTAAATTAATTTGTTAAATTACATGCTAC
TTAGGTTGTT
Found at i:7987286 original size:25 final size:23
Alignment explanation
Indices: 7987252--7987303 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 23
7987242 CTATATGTTC
7987252 TTAAGTTTAATT-AATTGAATTTGG
1 TTAAGTTTAATTAAATT-AATTT-G
7987276 TTAAGATTTAATTAAATTAATTTG
1 TTAAG-TTTAATTAAATTAATTTG
7987300 TTAA
1 TTAA
7987304 ATTACATGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 10 0.38
25 12 0.46
26 4 0.15
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (23 bp):
TTAAGTTTAATTAAATTAATTTG
Found at i:7990576 original size:14 final size:15
Alignment explanation
Indices: 7990545--7990577 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
7990535 TAGTGGCAAC
*
7990545 AAAGAGAGAGAGAAG
1 AAAGAGAGAGAAAAG
7990560 AAAGAGA-AGAAAAG
1 AAAGAGAGAGAAAAG
7990574 AAAG
1 AAAG
7990578 TTTTTGTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (15 bp):
AAAGAGAGAGAAAAG
Found at i:7992055 original size:35 final size:35
Alignment explanation
Indices: 7992009--7992077 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
7991999 TATCTATGTG
* *
7992009 AAGTCAGTTGTAAGTTTATGCCTAGAAAACATTTC
1 AAGTCAATTGTAAGTTTATACCTAGAAAACATTTC
*
7992044 AAGTCAATTGTAGGTTTATACCTAGAAAACATTT
1 AAGTCAATTGTAAGTTTATACCTAGAAAACATTT
7992078 GGTTTATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (35 bp):
AAGTCAATTGTAAGTTTATACCTAGAAAACATTTC
Found at i:7992839 original size:21 final size:21
Alignment explanation
Indices: 7992815--7992866 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 21
7992805 GAAAAAAATC
*
7992815 AATTAATACAAAAATAAAAG-T
1 AATTAATA-AAAAACAAAAGAT
7992836 AATT-ATGAAAAAACAAAAGAT
1 AATTAAT-AAAAAACAAAAGAT
7992857 AATATAATAA
1 AAT-TAATAA
7992867 CATGTAATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 12 0.46
21 9 0.35
22 3 0.12
23 2 0.08
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.23
Consensus pattern (21 bp):
AATTAATAAAAAACAAAAGAT
Found at i:7995269 original size:25 final size:25
Alignment explanation
Indices: 7995241--7995339 Score: 108
Period size: 25 Copynumber: 4.0 Consensus size: 25
7995231 ATGTGCTCAG
* *
7995241 AAACACCATTTAGCAAACTATTCAA
1 AAACACCATTTAGCAAACCATTTAA
* *
7995266 AAACACTATTTAGCAAACCATTTAG
1 AAACACCATTTAGCAAACCATTTAA
* *
7995291 AAACACCATTCAACAAACCATTTAA
1 AAACACCATTTAGCAAACCATTTAA
*** *
7995316 AAATGTCATTCAGCAAACCATTTA
1 AAACACCATTTAGCAAACCATTTA
7995340 GCAAAACAAC
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.46, C:0.23, G:0.05, T:0.25
Consensus pattern (25 bp):
AAACACCATTTAGCAAACCATTTAA
Found at i:7995290 original size:12 final size:12
Alignment explanation
Indices: 7995245--7995344 Score: 60
Period size: 12 Copynumber: 8.1 Consensus size: 12
7995235 GCTCAGAAAC
7995245 ACCATTTAGCAA
1 ACCATTTAGCAA
* * *
7995257 ACTATTCA-AAA
1 ACCATTTAGCAA
7995268 ACACTATTTAGCAA
1 AC-C-ATTTAGCAA
*
7995282 ACCATTTAGAAA
1 ACCATTTAGCAA
* *
7995294 CACCATTCAACAA
1 -ACCATTTAGCAA
*
7995307 ACCATTTA-AAA
1 ACCATTTAGCAA
* *
7995318 ATGTCATTCAGCAA
1 A--CCATTTAGCAA
7995332 ACCATTTAGCAA
1 ACCATTTAGCAA
7995344 A
1 A
7995345 ACAACATCAT
Statistics
Matches: 64, Mismatches: 17, Indels: 14
0.67 0.18 0.15
Matches are distributed among these distances:
11 7 0.11
12 31 0.48
13 19 0.30
14 7 0.11
ACGTcount: A:0.46, C:0.23, G:0.06, T:0.25
Consensus pattern (12 bp):
ACCATTTAGCAA
Found at i:7995293 original size:50 final size:50
Alignment explanation
Indices: 7995239--7995367 Score: 127
Period size: 50 Copynumber: 2.5 Consensus size: 50
7995229 CAATGTGCTC
* * * *
7995239 AGAAACACCATTTAGCAAACTATTCAAAAACACT-ATTTAGCAAACCATTT
1 AGAAACACCATTCAACAAACCATTCAAAAA-ACTCATTCAGCAAACCATTT
* **
7995289 AGAAACACCATTCAACAAACCATTTAAAAATGTCATTCAGCAAACCATTT
1 AGAAACACCATTCAACAAACCATTCAAAAAACTCATTCAGCAAACCATTT
*
7995339 AGCAAAACAACA-TCATACAATACCATTCA
1 AG--AAACACCATTCA-ACAA-ACCATTCA
7995368 GTAAACGAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
49 1 0.02
50 43 0.66
51 3 0.05
52 11 0.17
53 7 0.11
ACGTcount: A:0.47, C:0.24, G:0.05, T:0.23
Consensus pattern (50 bp):
AGAAACACCATTCAACAAACCATTCAAAAAACTCATTCAGCAAACCATTT
Found at i:7995300 original size:13 final size:13
Alignment explanation
Indices: 7995239--7995300 Score: 56
Period size: 13 Copynumber: 4.9 Consensus size: 13
7995229 CAATGTGCTC
7995239 AGAAACACCATTT
1 AGAAACACCATTT
* * *
7995252 AGCAA-ACTATTC
1 AGAAACACCATTT
* *
7995264 AAAAACACTATTT
1 AGAAACACCATTT
*
7995277 AGCAA-ACCATTT
1 AGAAACACCATTT
7995289 AGAAACACCATT
1 AGAAACACCATT
7995301 CAACAAACCA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
12 18 0.49
13 19 0.51
ACGTcount: A:0.47, C:0.23, G:0.06, T:0.24
Consensus pattern (13 bp):
AGAAACACCATTT
Found at i:7995364 original size:28 final size:29
Alignment explanation
Indices: 7995332--7995400 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
7995322 CATTCAGCAA
7995332 ACCATTTAGCAAAAC-AACATCATACAAT
1 ACCATTTAGCAAAACGAACATCATACAAT
* * * *
7995360 ACCATTCAG-TAAACGAATATTATACAAT
1 ACCATTTAGCAAAACGAACATCATACAAT
7995388 ACCATTTAGCAAA
1 ACCATTTAGCAAA
7995401 CTACAATATT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
27 4 0.12
28 27 0.82
29 2 0.06
ACGTcount: A:0.48, C:0.22, G:0.06, T:0.25
Consensus pattern (29 bp):
ACCATTTAGCAAAACGAACATCATACAAT
Found at i:7997577 original size:504 final size:504
Alignment explanation
Indices: 7996619--7997618 Score: 1672
Period size: 504 Copynumber: 2.0 Consensus size: 504
7996609 TTGAAGGTAT
* * *
7996619 TTTCTATAAAAAAAAATACCTTCAATAATTTTCTTTAAAAAATTCAAGGGAATTATTGAGGGCAT
1 TTTCTAT-AAAAAAAATACCTTCAATAATTTTCTTTAAAAAATTCAAGGAAATTATTGAAGACAT
* * *
7996684 TTTTAGTCAAAAACACCTTCAATAATCTCTTGATCAAAATTTGAGGGGATTATTAAAGGTATTTT
65 TTTTAGTCAAAAACACATTCAATAATCTCTCGATCAAAATTTGAAGGGATTATTAAAGGTATTTT
* *
7996749 TGGCAGAAAAATACCTTCACTGATATTTTTTATATTCATTCCCTGTCTTGAACTTCGGAATCATT
130 TGACAGAAAAATACCTTCACTGATATTTTTTATATTCATTCCCTGTCTTGAACTTCGAAATCATT
*
7996814 TTTATGTGATTTTTTAAAACTTCTCCCAACTCATAACATTATAATTTAATGGAATTCGTTTGTTT
195 TTTATGTAATTTTTTAAAACTTCTCCCAACTCATAACATTATAATTTAATGGAATTCGTTTGTTT
*
7996879 GAAAATGCCTCTATTTGTCAAATTTATAGGTTTTTATCTTACAAACTCTACTAAAATTGTCCCCA
260 GAAAATGCCTCTATTTGTCAAATTTATAGGCTTTTATCTTACAAACTCTACTAAAATTGTCCCCA
* *
7996944 AACTTAGTGTATTGATCCCCAACTTTAAGCCTCAACTTCATTAATCTACTATTTCTCATTTCAGA
325 AACTTAGTGTATTGATCCCCAACTTCAAGCCTCAACTTCATTAATCTACTATTTCTCATTTCAAA
* *
7997009 CCAACTACAATTTATTTTCCCTTTCCTTCAGCTTTTACTATTTGAACTTTGTCTTTTGGAACCTT
390 CCAACTACAATTTACTTTCCCTTTCCTTCAGCTTTTACTATTTGAACTTTGTCTTTTAGAACCTT
7997074 ATTTTTACTATTCCTTCATTATTTACTTTACCTTTTATTTCTTTTTTTTA
455 ATTTTTACTATTCCTTCATTATTTACTTTACCTTTTATTTCTTTTTTTTA
*
7997124 TTTCTAT-AAAAAAATACCTT-TATCAA-TTTCTTTTAAAAAATTCGAA-GAAATTATTGAAGAC
1 TTTCTATAAAAAAAATACCTTCAAT-AATTTTC-TTTAAAAAATTC-AAGGAAATTATTGAAGAC
*
7997185 ATTTTTAGTCAAAAATACATTCAATAATCTCCTCG-TCAAAATTTGAAGGGATTATTAAAGGTAT
63 ATTTTTAGTCAAAAACACATTCAATAATCT-CTCGATCAAAATTTGAAGGGATTATTAAAGGTAT
7997249 TTTTGACAGAAAAATACCTTCACTGATCATTTTTTATATTCATTTCCCTGTC-TGAACTTCGAAA
127 TTTTGACAGAAAAATACCTTCACTGAT-ATTTTTTATATTCA-TTCCCTGTCTTGAACTTCGAAA
* * * *
7997313 TCATTTTTATGTAATTTTTTAAAACTTCTCCCATCTCATAACATTATAATTTAGTGGCATTTGTT
190 TCATTTTTATGTAATTTTTTAAAACTTCTCCCAACTCATAACATTATAATTTAATGGAATTCGTT
*
7997378 TG-TTGAAAATGCCTCTATTTGTCAAATTTATAGGCTTTTGTCTTACAAACTCTACTAAAATTGT
255 TGTTTGAAAATGCCTCTATTTGTCAAATTTATAGGCTTTTATCTTACAAACTCTACTAAAATTGT
*
7997442 CCCCAAACTTAGTGTATTGAATCCCCAACTTCAAGCCTTAACTTCATTAATCTACTATTTCTCAT
320 CCCCAAACTTAGTGTATTG-ATCCCCAACTTCAAGCCTCAACTTCATTAATCTACTATTTCTCAT
7997507 TTCAAACCAACTACAATTTACTTTCCCTTTCCTTCAGCTTTTACTATTTGAACTTTGTCTTTTAG
384 TTCAAACCAACTACAATTTACTTTCCCTTTCCTTCAGCTTTTACTATTTGAACTTTGTCTTTTAG
*
7997572 AACCTTATTTTTACTATTCTTTCATTATTTACTTTACCTTTTATTTC
449 AACCTTATTTTTACTATTCCTTCATTATTTACTTTACCTTTTATTTC
7997619 ATTCTACTAT
Statistics
Matches: 465, Mismatches: 23, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
502 6 0.01
503 200 0.43
504 243 0.52
505 16 0.03
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.43
Consensus pattern (504 bp):
TTTCTATAAAAAAAATACCTTCAATAATTTTCTTTAAAAAATTCAAGGAAATTATTGAAGACATT
TTTAGTCAAAAACACATTCAATAATCTCTCGATCAAAATTTGAAGGGATTATTAAAGGTATTTTT
GACAGAAAAATACCTTCACTGATATTTTTTATATTCATTCCCTGTCTTGAACTTCGAAATCATTT
TTATGTAATTTTTTAAAACTTCTCCCAACTCATAACATTATAATTTAATGGAATTCGTTTGTTTG
AAAATGCCTCTATTTGTCAAATTTATAGGCTTTTATCTTACAAACTCTACTAAAATTGTCCCCAA
ACTTAGTGTATTGATCCCCAACTTCAAGCCTCAACTTCATTAATCTACTATTTCTCATTTCAAAC
CAACTACAATTTACTTTCCCTTTCCTTCAGCTTTTACTATTTGAACTTTGTCTTTTAGAACCTTA
TTTTTACTATTCCTTCATTATTTACTTTACCTTTTATTTCTTTTTTTTA
Found at i:8001785 original size:970 final size:960
Alignment explanation
Indices: 7998987--8001889 Score: 3534
Period size: 962 Copynumber: 3.0 Consensus size: 960
7998977 TTTTACTTCA
* * * *
7998987 GCATTTGGATGTACTTTTTAAGCATTTCATTTTTTTACTGAGCTTTGACATAATCATCTTCCATT
1 GCATTTGGATGTACTATCTAAGCATTTCATTTTCTTACTGAGCTTTGACATAATCATCATCCATT
* * * * * *
7999052 TGAGAGCATTCTTTTTTCAACATTTT-ATTCTCACAAGTCAAAGCTGTGTTATTCATTTCTTTGG
66 AG-GAGCATTCTCTTTTC-AGATTTTCATTCTCACAAGTCAAATCTATGTTATTTATTTCTTTGG
* * *
7999116 CTTGTATCTATATGTGTAACCTTTTGTGTTCTTGTTGTAGCTCTATCAACTCTTTAAGGGCATTA
129 CTTGTATCTATATGTGTAA-CTTTTGTGTTCTTGTTGTAGCTCCATCAGCTCCTTAAGGGCATTA
*
7999181 TCATGTTTTCTTATAACC-TTTAAGTCTTGCTCTTGGTCTCTAATATCTTGTGTTGTTGATCTTT
193 TCATGTTTT-TGATAACCTTTTAAGTCTTGCTCTTGGTCTCTAATATCTTGTGTTGTTGATCTTT
* * *
7999245 AACTATCATGTTGCACTTCTTAGAAATCTTGTGGACTTGAACTTCTAACTTTTTTGCTTTGTCTT
257 AACTATCATGTTGCACTTCTTAGAAATCTTATGGACTTGAACTTCTAACTTTTCTACTTTGTCTT
* * *
7999310 TCTATTATCCATTTTTTTCTAAAGCTTTAGAATTTCTTGTTTCATTTTATCTTTCTCAACTTCAA
322 TCCATTATCCATTTTTTCCTAAAGC-TTAGAATTTCTTGTTTTATTTTATCTTTCTCAACTTCAA
* * * * * *
7999375 ACCCCCTATCTACAAGTTCTAACTTTGAGGGCACATTATCCAACTCCTGATTTACTAACTGGTGC
386 ACCCCTTCTCTACAAGTTCTAACTTTGAGGGCACATTATCCAACTCCTGATTCATTAATTGGTGA
* * * ** *
7999440 TGGTCCTTAAACATAGGCACAA-CTTTTTTGCTTTTCTTGGCTCTTCAAATCAAATATCCTTGAG
451 TGGTCCTTAAATATAGGCACAACCTCTTAT--TTTTCTTGGCTCTT-TGATCAAATATCCTTGAA
* * *
7999504 TAACTTTATCATTAAATGGTCCAGAGG-TCACGC-TCTTGGGCTTCTTCCAAGCCTTGATTATGA
513 TGACTTTATCATTAAATGGTCCA-AGGTTCAC-CTTC-TGGGCTTCTTCTAAGCCTTGATTATGC
* * *
7999567 CATCGATTTTTTTGAAATGTTTTATGTTTTTCATATAAGTAATCAAATTGGTTGAGCTTGTATGT
575 CATCGA-TTTTTTGAAATGTTTTAAGTTCTTCATATAAGCAATCAAATTGGTTGAGCTTGTATGT
* * * *
7999632 CATAGGAATATATTGTTCAGCTCTATATTGTCTCCTTACTATCAATAGTGCATAACCTGTGAAAC
639 CATAGGAATAAATTGTTCAGCTCTATATTGTCTCCTTACCATCAATGGTGCATAACCTGT-AGAC
* * *
7999697 CCC-ATAAGCTTAAAAGTGGACCCCCTATCTCATCTCCACATTAATATAACATAGGTTCTTGACT
703 CCCTATAAGCTTAAAAGTGGAACCCCTATCTCATCTCCACATTAATACAACATGGGTTCTTGACT
* * * * **
7999761 CATCCATGGGACTAACCATTTCACATGACAAGCTGTGAGCTTTTGCAATATTTA-TCCCATTCTT
768 CATCCATGGGACTAACCATTTCACCTGAAAAGCCGTGAGCTTCTGCAATAGATATTCCCATTCTT
** * *
7999825 TCTTGGTCTTCGTCTCTGGTTATTCACTTTCATAAAACT-TATTGATAGGGTTTCAATTAT-AAA
833 TCTTGGTCTTCACCTCTAGTCATTCACTTTCATAAAACTCT-TTGATAGGGTTTCAATTATGAAA
* *
7999888 AACAGAGTTTAGAAAAAATG-TTCTTCCTACATTCAAAATGACTCTTCATCCATAAATACAATAA
897 AA-AGAGTTTAG-AAAAA-GCCTCTTCCTACATTCAAAATGGCTCTTCATCCATAAATACAATAA
7999952 TG
959 TG
* * * * *
7999954 GCATATAGATGTACTATCTGAGCATTTCATTTTCTTACTAAGCTTTGACATAATCATCCTCCATT
1 GCATTTGGATGTACTATCTAAGCATTTCATTTTCTTACTGAGCTTTGACATAATCATCATCCA-T
* * * * *
8000019 TAGGA-CATTTTCTTTTTAGCTTTTCATTCTCACAAGTCAAATTTATGTTGTTTATTTCTTTGGC
65 TAGGAGCATTCTCTTTTCAGATTTTCATTCTCACAAGTCAAATCTATGTTATTTATTTCTTTGGC
* ** * * * * * * *
8000083 CTACATCTATATATGCAA-TCTT-T-TACTTATTGTAGCTCCATCAGCTCCTTAAAGGCATTATT
130 TTGTATCTATATGTGTAACTTTTGTGTTCTTGTTGTAGCTCCATCAGCTCCTTAAGGGCATTATC
* * *
8000145 ACGTTATTTGATAACCTTTTAAATCTTGCTTTTGGTCTCTAATATCTTGTGTTGTTGATCTTTAA
195 ATGTT-TTTGATAACCTTTTAAGTCTTGCTCTTGGTCTCTAATATCTTGTGTTGTTGATCTTTAA
* * *
8000210 CTATTATGTGGCAC-TCTTTAGAAATCTTATGGACTTGAACTTCTAACTTTTCTATTTTGTCTTT
259 CTATCATGTTGCACTTC-TTAGAAATCTTATGGACTTGAACTTCTAACTTTTCTACTTTGTCTTT
* * * *
8000274 TCATTATCCATTTTCTTCCT-GAGTCTTAGAATTT-TTATTTTATTTTATATTTCTCAACTTCAA
323 CCATTATCCATTTT-TTCCTAAAG-CTTAGAATTTCTTGTTTTATTTTATCTTTCTCAACTTCAA
* * * * * * *
8000337 ACCCCTTCTCTACAAGTTCAAACTTTGAGGGCATATTTTTCAACTCCTGATTCATTGATTAG-CA
386 ACCCCTTCTCTACAAGTTCTAACTTTGAGGGCACATTATCCAACTCCTGATTCATTAATTGGTGA
* *
8000401 GTGGTCCTTAAATGTAGGCACAACCTC-TATGCTTCTT-TTGGCT-TTTCAGATCAAATATTCTT
451 -TGGTCCTTAAATATAGGCACAACCTCTTAT--TT-TTCTTGGCTCTTT--GATCAAATATCCTT
** ** ** * * * *
8000463 GAATGACTTTATTGTTAAATAATTTAGGGTTCACCTTTCCGGGTTTATTCTAAGCCTT-ATTTAT
510 GAATGACTTTATCATTAAATGGTCCAAGGTTCACC-TTCTGGGCTTCTTCTAAGCCTTGA-TTAT
* * *
8000527 GCCATCGATTTTTTTAAATGTTTTAAGTTCTTCATATAAGCAATCAAATTGGTTAAGCTTGTATA
573 GCCATCGATTTTTTGAAATGTTTTAAGTTCTTCATATAAGCAATCAAATTGGTTGAGCTTGTATG
* * * ** * * * * * *
8000592 TTATAGGAATAAATTGTTCAACTCCATGCTGTCTCTTTATCATTAGTGGTGCATAACTTGTGGA-
638 TCATAGGAATAAATTGTTCAGCTCTATATTGTCTCCTTACCATCAATGGTGCATAACCTGTAGAC
* * * *
8000656 CCCTCATAAGTTTAAAAATGGAACCCCTATCTTATCTCCACATTAATACAACATGGGTTTTTGAC
703 CCCT-ATAAGCTTAAAAGTGGAACCCCTATCTCATCTCCACATTAATACAACATGGGTTCTTGAC
* * * * **
8000721 TCATCTATGGGACTAACCATTTCACCTGATAGGCCGTGAGCTTCTGTAATAGATATTTTCATTCT
767 TCATCCATGGGACTAACCATTTCACCTGAAAAGCCGTGAGCTTCTGCAATAGATATTCCCATTCT
* * *
8000786 TTCTTAGTCTTCACCTCTAGTCATTCACTTTTACAAAACTCTTTGATAGGGTTTCAATTATGAAA
832 TTCTTGGTCTTCACCTCTAGTCATTCACTTTCATAAAACTCTTTGATAGGGTTTCAATTATGAAA
*
8000851 ATAGAGTTTAGAAAAAGCACTCTTCCTACATTCAAAATGGCTCTTCATCCATAAATACAATAATG
897 AAAGAGTTTAGAAAAAGC-CTCTTCCTACATTCAAAATGGCTCTTCATCCATAAATACAATAATG
* * *
8000916 GCATTTGGATGTACTCTCTAAGCATTTAATTTTCTTATTGAGCTTTGACATAATCATCATCCAGT
1 GCATTTGGATGTACTATCTAAGCATTTCATTTTCTTACTGAGCTTTGACATAATCATCATCCA-T
* * * **
8000981 TAGGAGCATTCTCTTTTCAGTTTTTCATTCTCATAAGTCAAATCTATGTTATTTATTTTTTTAAC
65 TAGGAGCATTCTCTTTTCAGATTTTCATTCTCACAAGTCAAATCTATGTTATTTATTTCTTTGGC
* * *
8001046 TTGTATCTATATGTATAACTTTTTGTGTTCTTGTTATAGCTCCATCAGCTCCTTATGGGCATTAT
130 TTGTATCTATATGTGTAAC-TTTTGTGTTCTTGTTGTAGCTCCATCAGCTCCTTAAGGGCATTAT
* * * *
8001111 CATGTTCTTTGATAACCTTTTAAGTCTTGCTCTCGGTCTTTAATATCTTGTGTTATTGATTTTTA
194 CATGTT-TTTGATAACCTTTTAAGTCTTGCTCTTGGTCTCTAATATCTTGTGTTGTTGATCTTTA
* *
8001176 ACTATCATGTTACACTTCTTAGAAATCTTATGGACTTGAACTTTTAACTTTTCTACTTTGTCTTT
258 ACTATCATGTTGCACTTCTTAGAAATCTTATGGACTTGAACTTCTAACTTTTCTACTTTGTCTTT
* *
8001241 CCATTGTCCATTTTATTCCTAAAGCCTT-GAAATTTCTTGTTTTATTTTATCTTTCTCAACTTTA
323 CCATTATCCATTTT-TTCCTAAAG-CTTAG-AATTTCTTGTTTTATTTTATCTTTCTCAACTTCA
*
8001305 AACCCCTTCTCTACAAGTTCTAACTTTGAAGGCACATTATCCAACTCCTGATTCATTAATTGGTG
385 AACCCCTTCTCTACAAGTTCTAACTTTGAGGGCACATTATCCAACTCCTGATTCATTAATTGGTG
* **** *
8001370 ATGGTCCTTGAATATAAATGCAACCTCCTTATTTTTCTTGGCTCTCTTGATCAAATATCCATGAA
450 ATGGTCCTTAAATATAGGCACAACCT-CTTATTTTTCTTGGCTCT-TTGATCAAATATCCTTGAA
* *
8001435 TGACTTTATCATTAAATGGTCCAAGGTTCACCATTCTAGGCGTCTTCTAAGCCTTGATTATGCCA
513 TGACTTTATCATTAAATGGTCCAAGGTTCACC-TTCTGGGCTTCTTCTAAGCCTTGATTATGCCA
* * *
8001500 TCGATATTTTTGAAATGTTTTAGGTTCTCCATATAAGCAATCAAATTGGTTGAGCTTGAATGTCA
577 TCGAT-TTTTTGAAATGTTTTAAGTTCTTCATATAAGCAATCAAATTGGTTGAGCTTGTATGTCA
* * * * *
8001565 TAGAAATAAACTGTTTAGCTCTATATTGTCTCCTTACCATCAACGGTGCATAACCTATAGACCCC
641 TAGGAATAAATTGTTCAGCTCTATATTGTCTCCTTACCATCAATGGTGCATAACCTGTAGACCCC
* ** * *
8001630 TATAAGCCTAAAAGTGGAACTTCTATCTCATCTCCACATTAAGACAACATGGGTTCTCGACTCAT
706 TATAAGCTTAAAAGTGGAACCCCTATCTCATCTCCACATTAATACAACATGGGTTCTTGACTCAT
* * * * *
8001695 CCATGGGACTAACCATTTCACCTAAAAAGCCATAAGCTTCTGCAATAGATATTCCCATTTTTTAT
771 CCATGGGACTAACCATTTCACCTGAAAAGCCGTGAGCTTCTGCAATAGATATTCCCATTCTTTCT
* * * *
8001760 TGGTCTTCACCTTTAGTCATTCACTTTCGTAAAACTCCTTGATAGGGTTTCGATTATGAAAAAAG
836 TGGTCTTCACCTCTAGTCATTCACTTTCATAAAACTCTTTGATAGGGTTTCAATTATGAAAAAAG
* * * * *
8001825 AGCTTAGAAAAAGCCT-TACTCCTACATTCAATATGGCTCTTCTTCTACAAATACAATAATG
901 AGTTTAGAAAAAGCCTCT--TCCTACATTCAAAATGGCTCTTCATCCATAAATACAATAATG
8001886 GCAT
1 GCAT
8001890 GCACCCCAAA
Statistics
Matches: 1625, Mismatches: 268, Indels: 83
0.82 0.14 0.04
Matches are distributed among these distances:
959 3 0.00
960 2 0.00
961 209 0.13
962 387 0.24
963 200 0.12
964 8 0.00
965 8 0.00
966 57 0.04
967 221 0.14
968 18 0.01
969 180 0.11
970 323 0.20
971 9 0.01
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (960 bp):
GCATTTGGATGTACTATCTAAGCATTTCATTTTCTTACTGAGCTTTGACATAATCATCATCCATT
AGGAGCATTCTCTTTTCAGATTTTCATTCTCACAAGTCAAATCTATGTTATTTATTTCTTTGGCT
TGTATCTATATGTGTAACTTTTGTGTTCTTGTTGTAGCTCCATCAGCTCCTTAAGGGCATTATCA
TGTTTTTGATAACCTTTTAAGTCTTGCTCTTGGTCTCTAATATCTTGTGTTGTTGATCTTTAACT
ATCATGTTGCACTTCTTAGAAATCTTATGGACTTGAACTTCTAACTTTTCTACTTTGTCTTTCCA
TTATCCATTTTTTCCTAAAGCTTAGAATTTCTTGTTTTATTTTATCTTTCTCAACTTCAAACCCC
TTCTCTACAAGTTCTAACTTTGAGGGCACATTATCCAACTCCTGATTCATTAATTGGTGATGGTC
CTTAAATATAGGCACAACCTCTTATTTTTCTTGGCTCTTTGATCAAATATCCTTGAATGACTTTA
TCATTAAATGGTCCAAGGTTCACCTTCTGGGCTTCTTCTAAGCCTTGATTATGCCATCGATTTTT
TGAAATGTTTTAAGTTCTTCATATAAGCAATCAAATTGGTTGAGCTTGTATGTCATAGGAATAAA
TTGTTCAGCTCTATATTGTCTCCTTACCATCAATGGTGCATAACCTGTAGACCCCTATAAGCTTA
AAAGTGGAACCCCTATCTCATCTCCACATTAATACAACATGGGTTCTTGACTCATCCATGGGACT
AACCATTTCACCTGAAAAGCCGTGAGCTTCTGCAATAGATATTCCCATTCTTTCTTGGTCTTCAC
CTCTAGTCATTCACTTTCATAAAACTCTTTGATAGGGTTTCAATTATGAAAAAAGAGTTTAGAAA
AAGCCTCTTCCTACATTCAAAATGGCTCTTCATCCATAAATACAATAATG
Found at i:8004093 original size:15 final size:15
Alignment explanation
Indices: 8004075--8004155 Score: 78
Period size: 15 Copynumber: 5.4 Consensus size: 15
8004065 GTATAAGAAA
*
8004075 GAAATTAATAATAAT
1 GAAAATAATAATAAT
* * *
8004090 GAAATTAAGAAGAAT
1 GAAAATAATAATAAT
8004105 AGAAAATAATAATAAT
1 -GAAAATAATAATAAT
8004121 -AATAATAATAATAAT
1 GAA-AATAATAATAAT
8004136 -AATAATAATAATAAT
1 GAA-AATAATAATAAT
8004151 -AAAAT
1 GAAAAT
8004156 GAAATAAAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
14 5 0.08
15 42 0.71
16 12 0.20
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
GAAAATAATAATAAT
Found at i:8004115 original size:3 final size:3
Alignment explanation
Indices: 8004109--8004152 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
8004099 AAGAATAGAA
8004109 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8004153 AATGAAATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8004618 original size:41 final size:42
Alignment explanation
Indices: 8004559--8004651 Score: 138
Period size: 42 Copynumber: 2.3 Consensus size: 42
8004549 TTTTTCCCAA
*
8004559 AAATTC-AACCTAATCCCAAAAACTT-AAACTC-CAAAACTAG
1 AAATTCAAACCTAAACCC-AAAACTTCAAACTCTCAAAACTAG
*
8004599 AAATTCAAACCTAAACCCAAAACTTCAAACTCTCAAACCTAG
1 AAATTCAAACCTAAACCCAAAACTTCAAACTCTCAAAACTAG
8004641 AAATTCAAACC
1 AAATTCAAACC
8004652 ACTCTCAATC
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
40 13 0.27
41 16 0.33
42 19 0.40
ACGTcount: A:0.49, C:0.29, G:0.02, T:0.19
Consensus pattern (42 bp):
AAATTCAAACCTAAACCCAAAACTTCAAACTCTCAAAACTAG
Found at i:8009404 original size:28 final size:28
Alignment explanation
Indices: 8009373--8009428 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
8009363 TATTGCAAAA
* * *
8009373 GTCAAAATCTTATACAAATATTAAAATT
1 GTCAAAATCCTAAACAAAGATTAAAATT
*
8009401 GTCAAAATCCTAAACAAAGATTGAAATT
1 GTCAAAATCCTAAACAAAGATTAAAATT
8009429 TACTTGGATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.30
Consensus pattern (28 bp):
GTCAAAATCCTAAACAAAGATTAAAATT
Found at i:8012024 original size:15 final size:14
Alignment explanation
Indices: 8011973--8012031 Score: 50
Period size: 15 Copynumber: 4.0 Consensus size: 14
8011963 CGTTTGGAGC
8011973 TATTTTTTT-TTTT
1 TATTTTTTTATTTT
*
8011986 T-TTTGCTTTATGTTGT
1 TATTT-TTTTAT-TT-T
8012002 TAATTTTTTTCATTTT
1 T-ATTTTTTT-ATTTT
8012018 TATTTTTTTATTTT
1 TATTTTTTTATTTT
8012032 CAATTGGTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
12 3 0.08
13 4 0.11
14 6 0.16
15 10 0.27
16 4 0.11
17 5 0.14
18 5 0.14
ACGTcount: A:0.12, C:0.03, G:0.05, T:0.80
Consensus pattern (14 bp):
TATTTTTTTATTTT
Found at i:8016962 original size:32 final size:31
Alignment explanation
Indices: 8016910--8016970 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
8016900 TCCTTTTTAT
*
8016910 TTTTATTTTTATTTTCATTTTTTAGAAAATAG
1 TTTTATTTTTATTTTCATTTTCTA-AAAATAG
*
8016942 TTTTATTTTGT-TTTTTATTTTCTAAAAAT
1 TTTTATTTT-TATTTTCATTTTCTAAAAAT
8016971 GTATTTGGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 5 0.19
32 20 0.77
33 1 0.04
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (31 bp):
TTTTATTTTTATTTTCATTTTCTAAAAATAG
Found at i:8019747 original size:18 final size:20
Alignment explanation
Indices: 8019714--8019768 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 20
8019704 TACTTTATTT
8019714 TTTATTGATC-AATAAATT-A
1 TTTATT-ATCAAATAAATTAA
8019733 TTT-TTCAT-AAATAAATTAA
1 TTTATT-ATCAAATAAATTAA
8019752 TTTATTATCAAATAAAT
1 TTTATTATCAAATAAAT
8019769 ACCTAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 12 0.39
19 9 0.29
20 10 0.32
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.47
Consensus pattern (20 bp):
TTTATTATCAAATAAATTAA
Found at i:8021577 original size:36 final size:36
Alignment explanation
Indices: 8021527--8021598 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
8021517 CTTCCCCTCT
*
8021527 CTAACTGTTCCCTTTAACAAATTTTTAATGACTTAG
1 CTAACTGTTACCTTTAACAAATTTTTAATGACTTAG
* *
8021563 CTAACTGTTACCTTTAACAGATTTTTGATGACTTAG
1 CTAACTGTTACCTTTAACAAATTTTTAATGACTTAG
8021599 ATTTACCTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (36 bp):
CTAACTGTTACCTTTAACAAATTTTTAATGACTTAG
Found at i:8035181 original size:21 final size:21
Alignment explanation
Indices: 8035157--8035207 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
8035147 TCTGAAATTA
8035157 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
8035178 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
8035199 AT-AAATATT
1 ATAAAATATT
8035208 TAATTATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATAAAATATTATTTTTTAAAT
Found at i:8035221 original size:8 final size:8
Alignment explanation
Indices: 8035197--8035237 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
8035187 TATTTTTTAA
*
8035197 ATATAAAT
1 ATATAATT
*
8035205 ATTTAATT
1 ATATAATT
8035213 ATATAATT
1 ATATAATT
*
8035221 ATATAAAT
1 ATATAATT
8035229 ATATAATT
1 ATATAATT
8035237 A
1 A
8035238 ATTAGTTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
ATATAATT
Found at i:8035235 original size:16 final size:16
Alignment explanation
Indices: 8035176--8035237 Score: 58
Period size: 16 Copynumber: 4.1 Consensus size: 16
8035166 TATTTTTTAA
*
8035176 ATATAAA-ATATTATT
1 ATATAAATATATAATT
* *
8035191 TTTTAAATATA-AA-T
1 ATATAAATATATAATT
* *
8035205 ATTTAATTATATAATT
1 ATATAAATATATAATT
8035221 ATATAAATATATAATT
1 ATATAAATATATAATT
8035237 A
1 A
8035238 ATTAGTTAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
14 10 0.27
15 8 0.22
16 19 0.51
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATAAATATATAATT
Found at i:8036261 original size:2 final size:2
Alignment explanation
Indices: 8036254--8036283 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8036244 CTAAATCTAA
8036254 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8036284 TCAACTTCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8050832 original size:3 final size:3
Alignment explanation
Indices: 8050824--8050849 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8050814 TTTTAATACA
8050824 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
8050850 ATTATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8053547 original size:2 final size:2
Alignment explanation
Indices: 8053540--8053568 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8053530 TTCTTCTTAA
8053540 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8053569 AAACCACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8056207 original size:12 final size:12
Alignment explanation
Indices: 8056192--8056225 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
8056182 TCTTTTTCGT
8056192 TTTCTTTCTACA
1 TTTCTTTCTACA
8056204 TTTCTTTCTACA
1 TTTCTTTCTACA
*
8056216 TTTCTCTCTA
1 TTTCTTTCTA
8056226 TTTCTCTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.15, C:0.26, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTCTTTCTACA
Found at i:8056900 original size:21 final size:22
Alignment explanation
Indices: 8056876--8056925 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
8056866 GCATTTTAAA
8056876 AATATTAAATTTATTT-TTTTC
1 AATATTAAATTTATTTATTTTC
** *
8056897 AATATTTTATTTTTTTAATTTTC
1 AATATTAAATTTATTT-ATTTTC
8056920 AATATT
1 AATATT
8056926 TTGAATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 13 0.54
23 11 0.46
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (22 bp):
AATATTAAATTTATTTATTTTC
Found at i:8056934 original size:23 final size:23
Alignment explanation
Indices: 8056892--8056936 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8056882 AAATTTATTT
*
8056892 TTTTCAATATTTTATTTTTTTAA
1 TTTTCAATATTTTATATTTTTAA
8056915 TTTTCAATATTTTGA-ATTTTTA
1 TTTTCAATATTTT-ATATTTTTA
8056937 GAAATTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTTCAATATTTTATATTTTTAA
Found at i:8056976 original size:82 final size:83
Alignment explanation
Indices: 8056837--8056996 Score: 234
Period size: 82 Copynumber: 1.9 Consensus size: 83
8056827 CTAATATAAA
* *
8056837 AATATTTTGAATTTTTCAAAAATTTTGTAGCATTTTAAAAATATTAAATTTATTTTTTTCAATAT
1 AATATTTTGAATTTTTCAAAAATTTTCTAGCATTTTAAAAATATTAAATTTACTTTTTTCAATAT
*
8056902 TTTATTTTTTTAATTTTC
66 TTTAGTTTTTTAATTTTC
* * * *
8056920 AATATTTTGAATTTTT-AGAAATTTTCTAG-TTTTTAAAAAATATTTAATTTACTTTTTTTAATA
1 AATATTTTGAATTTTTCAAAAATTTTCTAGCATTTT-AAAAATATTAAATTTACTTTTTTCAATA
8056983 TTTTAGTTTTTTAA
65 TTTTAGTTTTTTAA
8056997 ATAAAAATCA
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 4 0.06
82 49 0.71
83 16 0.23
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (83 bp):
AATATTTTGAATTTTTCAAAAATTTTCTAGCATTTTAAAAATATTAAATTTACTTTTTTCAATAT
TTTAGTTTTTTAATTTTC
Found at i:8057010 original size:83 final size:83
Alignment explanation
Indices: 8056832--8057020 Score: 231
Period size: 82 Copynumber: 2.3 Consensus size: 83
8056822 TCCCTCTAAT
*
8056832 ATAAAAATATTTTGAATTTTTCAAAAATTTTGTAGCATTTTAAAAATATTAAATTTATTTTTTTC
1 ATAAAAATATTTTGAATTTTTCAAAAATTTTCTAGCATTTTAAAAATATTAAATTTATTTTTTTC
*
8056897 AATATTTTATTTTTTTAA
66 AATATTTTAGTTTTTTAA
* *** * * *
8056915 TTTTCAATATTTTGAATTTTT-AGAAATTTTCTAG-TTTTTAAAAAATATTTAATTTACTTTTTT
1 ATAAAAATATTTTGAATTTTTCAAAAATTTTCTAGCATTTT-AAAAATATTAAATTTA-TTTTTT
8056978 T-AATATTTTAGTTTTTTAA
64 TCAATATTTTAGTTTTTTAA
8056997 ATAAAAATCATTTTTTGAATTTTT
1 ATAAAAAT-A--TTTTGAATTTTT
8057021 TATGTTTTCA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
81 4 0.05
82 47 0.53
83 25 0.28
85 12 0.14
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (83 bp):
ATAAAAATATTTTGAATTTTTCAAAAATTTTCTAGCATTTTAAAAATATTAAATTTATTTTTTTC
AATATTTTAGTTTTTTAA
Found at i:8057641 original size:31 final size:31
Alignment explanation
Indices: 8057581--8057644 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
8057571 ATGTTAGAGG
** *
8057581 AACTAAATTTTAAATTTCGTGTAAGTATAAA
1 AACTAAATTTTAAATTTAATATAAGTATAAA
8057612 AACTAAATTTTAAATTTAATATGAA-TATAAA
1 AACTAAATTTTAAATTTAATAT-AAGTATAAA
8057643 AA
1 AA
8057645 TCATTTGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 27 0.93
32 2 0.07
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.38
Consensus pattern (31 bp):
AACTAAATTTTAAATTTAATATAAGTATAAA
Found at i:8059976 original size:60 final size:58
Alignment explanation
Indices: 8059866--8059997 Score: 221
Period size: 57 Copynumber: 2.3 Consensus size: 58
8059856 ACCAGCAATA
*
8059866 CCAGCCCCAGCAAATGGTCGCACTAATTGGAAATGATCCTCAGGCTCAACAACAACAGTT
1 CCAGCCCCAGCAAATGGGCGCAC--ATTGGAAATGATCCTCAGGCTCAACAACAACAGTT
8059926 CCAGCCCCAGCAAATGGGCGCAC-TTGGAAATGATCCTCAGGCTCAACAACAACAGTT
1 CCAGCCCCAGCAAATGGGCGCACATTGGAAATGATCCTCAGGCTCAACAACAACAGTT
*
8059983 CCAGCCACAGCAAAT
1 CCAGCCCCAGCAAAT
8059998 CCAACAGCAG
Statistics
Matches: 70, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
57 48 0.69
60 22 0.31
ACGTcount: A:0.33, C:0.32, G:0.19, T:0.16
Consensus pattern (58 bp):
CCAGCCCCAGCAAATGGGCGCACATTGGAAATGATCCTCAGGCTCAACAACAACAGTT
Found at i:8075394 original size:11 final size:11
Alignment explanation
Indices: 8075370--8075417 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 11
8075360 TTGAATTTTT
8075370 TTAAAATA-TA
1 TTAAAATATTA
8075380 TTAAAATATTA
1 TTAAAATATTA
*
8075391 TT--AATATTT
1 TTAAAATATTA
8075400 TTAAATATATT-
1 TTAAA-ATATTA
8075411 TTAAAAT
1 TTAAAAT
8075418 TAAAATATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
9 8 0.24
10 10 0.30
11 10 0.30
12 5 0.15
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TTAAAATATTA
Found at i:8075435 original size:16 final size:17
Alignment explanation
Indices: 8075400--8075444 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
8075390 ATTAATATTT
8075400 TTAAATATATTTTAAAA
1 TTAAATATATTTTAAAA
**
8075417 TTAAA-ATATTTTACTA
1 TTAAATATATTTTAAAA
8075433 TTAAATAATATT
1 TTAAAT-ATATT
8075445 CCAAATCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 14 0.58
17 5 0.21
18 5 0.21
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAAATATATTTTAAAA
Found at i:8076558 original size:23 final size:23
Alignment explanation
Indices: 8076532--8076576 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
8076522 ATAATTAAAT
*
8076532 TATT-ATATTGATCTTGAAAATGA
1 TATTAATATT-ATCTTAAAAATGA
8076555 TATTAAATATTATCTTAAAAAT
1 TATT-AATATTATCTTAAAAAT
8076577 CTTTATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.21
24 10 0.53
25 5 0.26
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.44
Consensus pattern (23 bp):
TATTAATATTATCTTAAAAATGA
Found at i:8087932 original size:492 final size:488
Alignment explanation
Indices: 8087244--8088223 Score: 1601
Period size: 492 Copynumber: 2.0 Consensus size: 488
8087234 ACATGAAATA
* *
8087244 CATCAATTATTGGATATTATATTTAATCAAATATAAATGTATCAAATAATTGATTAGAGAATCAA
1 CATCAATTACTAGATATTATATTTAATCAAATATAAATGTATCAAATAATTGATTAGAGAATCAA
* * *
8087309 CTATTTTATAATTGTAATTGTAGTATTTATTTAATTATATATTGATTGATTTAATTTGTCAAATT
66 CTATTTTATAATTGTAATTCTAATATTTATTTAATTATATATTGATTGATTTAATTTATCAAATT
* *
8087374 AAGAAAATTTTAAAATTTTAATGCTTTTAATATGAATTGAATTGAAAGTAATTTAAGGTTAATAA
131 AAGAAAATTTTAAAATTTTAATACTTTCAATATGAATTGAATTGAAAGTAATTTAAGGTTAATAA
*
8087439 TAAAAACATAAATATAATAAATTTAGTTTTTTTAATTATTTTTAAATTAAAAATGCATTAAATAA
196 TAAAAACATAAATATAATAAATTTAGTTTTTTGAATTATTTTTAAATTAAAAATGCATTAAATAA
* * * *
8087504 AATAAAATATATTTATTAAATGTCACGA-GACAATTTTTAAAATTGTCCACATAAGATTTTTTTT
261 AATAAAATACATTTATTAAATGTCAC-ATGACAATTTTTAAAACTATCCACATAAGATTTCTTTT
8087568 TTCATTTTTGCCAAAATTTTGACTTTTATATATTTATATAAGATAAGA-AATTTTTAACTTATAT
325 TTCATTTTTGCCAAAATTTTGACTTTTATATATTTATATAAGATAA-ACAATTTTTAACTTATAT
* * * * * *
8087632 AG-CAGCTGGCATGGTTTAAATTAACATAAAAAAAAAAAAAACATTTTAGGCAAAAGAAAGAG-A
389 -GTCAACTGACACGGATAAAATTAACAT------AAAAAAAACATTTTAGGAAAAAGAAAGAGAA
8087695 AAAAATATTTTTCAAGATAAAATAATTTAAGTTCTTTTCTGC
447 AAAAATATTTTTCAAGATAAAATAATTTAAGTTCTTTTCTGC
*
8087737 CATCAATTACTAGATATTATATTTAATCAAATATAAATGTATCAAATAATTGATTAGAGAATTAA
1 CATCAATTACTAGATATTATATTTAATCAAATATAAATGTATCAAATAATTGATTAGAGAATCAA
* *
8087802 GTATTTTATAATTGTAATTCTAAT-TTTTTTTAATTATATATTGATTGATTTAATTTATCAAATT
66 CTATTTTATAATTGTAATTCTAATATTTATTTAATTATATATTGATTGATTTAATTTATCAAATT
*
8087866 AAGAAAATTTTAAAATTTTAATACTTTCAATATGAATTGAATTGAAAGTGATTTAAGGTTAATAA
131 AAGAAAATTTTAAAATTTTAATACTTTCAATATGAATTGAATTGAAAGTAATTTAAGGTTAATAA
*
8087931 TAAAAACATAAATATAATAAATTTAGTTTTTTGAATTATTTTTAAATTAAAAATGTATTAAATAA
196 TAAAAACATAAATATAATAAATTTAGTTTTTTGAATTATTTTTAAATTAAAAATGCATTAAATAA
* *
8087996 AATAAAATGCATTTATTAAATGTCACATGACGATTTTTAAAACTATCCACATAAGATTTCTTTTT
261 AATAAAATACATTTATTAAATGTCACATGACAATTTTTAAAACTATCCACATAAGATTTCTTTTT
* *
8088061 TCATTTTTGCCAAAGTTTTGACTTTTATATATTTATATAAGATAAACAATTTTTTACTTATATGT
326 TCATTTTTGCCAAAATTTTGACTTTTATATATTTATATAAGATAAACAATTTTTAACTTATATGT
8088126 CAACTGACACGGATAAAATTAACATAAAAAAAACATTTTAGGAAAAAGAAAGAGAAAAAAATATT
391 CAACTGACACGGATAAAATTAACATAAAAAAAACATTTTAGGAAAAAGAAAGAGAAAAAAATATT
8088191 TTTCAAGATAAAATAATTTAAGTTCTTTTCTGC
456 TTTCAAGATAAAATAATTTAAGTTCTTTTCTGC
8088224 TAAAATATTT
Statistics
Matches: 456, Mismatches: 27, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
486 28 0.06
487 43 0.09
491 3 0.01
492 299 0.66
493 83 0.18
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (488 bp):
CATCAATTACTAGATATTATATTTAATCAAATATAAATGTATCAAATAATTGATTAGAGAATCAA
CTATTTTATAATTGTAATTCTAATATTTATTTAATTATATATTGATTGATTTAATTTATCAAATT
AAGAAAATTTTAAAATTTTAATACTTTCAATATGAATTGAATTGAAAGTAATTTAAGGTTAATAA
TAAAAACATAAATATAATAAATTTAGTTTTTTGAATTATTTTTAAATTAAAAATGCATTAAATAA
AATAAAATACATTTATTAAATGTCACATGACAATTTTTAAAACTATCCACATAAGATTTCTTTTT
TCATTTTTGCCAAAATTTTGACTTTTATATATTTATATAAGATAAACAATTTTTAACTTATATGT
CAACTGACACGGATAAAATTAACATAAAAAAAACATTTTAGGAAAAAGAAAGAGAAAAAAATATT
TTTCAAGATAAAATAATTTAAGTTCTTTTCTGC
Found at i:8092733 original size:1 final size:1
Alignment explanation
Indices: 8092696--8092723 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
8092686 GTGTCATGAG
8092696 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
8092724 GGAAGAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8094642 original size:4 final size:4
Alignment explanation
Indices: 8094633--8094669 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
8094623 AAAAATACCC
8094633 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
8094670 TATATATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:8097067 original size:26 final size:26
Alignment explanation
Indices: 8097033--8097104 Score: 135
Period size: 26 Copynumber: 2.8 Consensus size: 26
8097023 AAACTACCTC
*
8097033 AAAATATACTCATCAAGCAACAATAA
1 AAAATATACTCACCAAGCAACAATAA
8097059 AAAATATACTCACCAAGCAACAATAA
1 AAAATATACTCACCAAGCAACAATAA
8097085 AAAATATACTCACCAAGCAA
1 AAAATATACTCACCAAGCAA
8097105 ATACAATTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.57, C:0.22, G:0.04, T:0.17
Consensus pattern (26 bp):
AAAATATACTCACCAAGCAACAATAA
Found at i:8098006 original size:117 final size:117
Alignment explanation
Indices: 8097800--8098037 Score: 458
Period size: 117 Copynumber: 2.0 Consensus size: 117
8097790 TAAAGACAGT
*
8097800 TTTAATTACTCAAAAACTCATTGACTGTATTTTCCTTTAACAATAAAAAAGATTAAAACAGAGAG
1 TTTAATTACTCAAAAACTCATTGACCGTATTTTCCTTTAACAATAAAAAAGATTAAAACAGAGAG
8097865 AGACAATTACTCACTAAACCACTGTGAAAGTACAAGGCCCTAGGGAGATCCA
66 AGACAATTACTCACTAAACCACTGTGAAAGTACAAGGCCCTAGGGAGATCCA
*
8097917 TTTAATTACTCAAAAACTCATTGACCGTATTTTCCTTTAACAATAAAAAAGATTAAAACGGAGAG
1 TTTAATTACTCAAAAACTCATTGACCGTATTTTCCTTTAACAATAAAAAAGATTAAAACAGAGAG
8097982 AGACAATTACTCACTAAACCACTGTGAAAGTACAAGGCCCTAGGGAGATCCA
66 AGACAATTACTCACTAAACCACTGTGAAAGTACAAGGCCCTAGGGAGATCCA
8098034 TTTA
1 TTTA
8098038 TCCAGTTAAA
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
117 119 1.00
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (117 bp):
TTTAATTACTCAAAAACTCATTGACCGTATTTTCCTTTAACAATAAAAAAGATTAAAACAGAGAG
AGACAATTACTCACTAAACCACTGTGAAAGTACAAGGCCCTAGGGAGATCCA
Found at i:8100427 original size:22 final size:22
Alignment explanation
Indices: 8100402--8100445 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8100392 TGTATATTCA
* *
8100402 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCAAGAATTAAG
8100424 TATTTGTATCCCAAGAATTAAG
1 TATTTGTATCCCAAGAATTAAG
8100446 GACAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (22 bp):
TATTTGTATCCCAAGAATTAAG
Found at i:8101888 original size:11 final size:12
Alignment explanation
Indices: 8101870--8101902 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
8101860 GATTGAAAAG
8101870 TTGAAAAGCCTT
1 TTGAAAAGCCTT
8101882 TTG-AAAGCC-T
1 TTGAAAAGCCTT
8101892 TTGAAAAGCCT
1 TTGAAAAGCCT
8101903 ACTAGGGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 4 0.21
11 12 0.63
12 3 0.16
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (12 bp):
TTGAAAAGCCTT
Found at i:8122437 original size:16 final size:16
Alignment explanation
Indices: 8122406--8122453 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
8122396 TGATGATAAC
*
8122406 AAATGAGAAA-GAGAA
1 AAATGAGAAATAAGAA
*
8122421 AAGATGA-AAATAGGAA
1 AA-ATGAGAAATAAGAA
8122437 AAATGAGAAATAAGAA
1 AAATGAGAAATAAGAA
8122453 A
1 A
8122454 TCAAACGAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
15 9 0.33
16 18 0.67
ACGTcount: A:0.67, C:0.00, G:0.23, T:0.10
Consensus pattern (16 bp):
AAATGAGAAATAAGAA
Found at i:8128397 original size:29 final size:29
Alignment explanation
Indices: 8128355--8128414 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
8128345 GCTATATAAG
8128355 GCCTCTATCTCTCATTTTACAATTTTTTT
1 GCCTCTATCTCTCATTTTACAATTTTTTT
8128384 GCCTCTATCTCTCATTTTACAATTTTTTT
1 GCCTCTATCTCTCATTTTACAATTTTTTT
8128413 GC
1 GC
8128415 TCTCATGTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.17, C:0.25, G:0.05, T:0.53
Consensus pattern (29 bp):
GCCTCTATCTCTCATTTTACAATTTTTTT
Found at i:8131142 original size:16 final size:17
Alignment explanation
Indices: 8131117--8131149 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8131107 AAGAAAAAGT
8131117 TTTTTCTTTTT-GATAA
1 TTTTTCTTTTTCGATAA
*
8131133 TTTTTGTTTTTCGATAA
1 TTTTTCTTTTTCGATAA
8131150 AAATTATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.18, C:0.06, G:0.09, T:0.67
Consensus pattern (17 bp):
TTTTTCTTTTTCGATAA
Found at i:8139075 original size:17 final size:15
Alignment explanation
Indices: 8139044--8139078 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
8139034 TACTTAGTTA
8139044 TTATTATAATTTATT
1 TTATTATAATTTATT
8139059 TTATATATAATTTTATT
1 TTAT-TATAA-TTTATT
8139076 TTA
1 TTA
8139079 AAAAATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 5 0.28
17 9 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATTATAATTTATT
Found at i:8142528 original size:12 final size:12
Alignment explanation
Indices: 8142489--8142537 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
8142479 CAGAAGAAGC
8142489 AAGTTATAATAA
1 AAGTTATAATAA
* *
8142501 AAGTT-T-CTAC
1 AAGTTATAATAA
8142511 AAGTTATAATAA
1 AAGTTATAATAA
*
8142523 AAGTTATGATAA
1 AAGTTATAATAA
8142535 AAG
1 AAG
8142538 ACGATAGAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
10 7 0.23
11 2 0.07
12 21 0.70
ACGTcount: A:0.51, C:0.04, G:0.12, T:0.33
Consensus pattern (12 bp):
AAGTTATAATAA
Found at i:8148923 original size:20 final size:20
Alignment explanation
Indices: 8148887--8148924 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8148877 AACTTAAAAA
8148887 TTAAAAAAAATCTCAAAATT
1 TTAAAAAAAATCTCAAAATT
8148907 TTAATAAAAAATC-CAAAA
1 TTAA-AAAAAATCTCAAAA
8148925 ATATTAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (20 bp):
TTAAAAAAAATCTCAAAATT
Found at i:8148925 original size:21 final size:20
Alignment explanation
Indices: 8148882--8148931 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
8148872 ATGAAAACTT
8148882 AAAA-ATTAAAAAAAATCTC
1 AAAATATTAAAAAAAATCTC
*
8148901 AAAATTTTAATAAAAAATC-C
1 AAAATATTAA-AAAAAATCTC
8148921 AAAAATATTAA
1 -AAAATATTAA
8148932 GAAATTTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 4 0.15
20 5 0.19
21 17 0.65
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (20 bp):
AAAATATTAAAAAAAATCTC
Found at i:8149057 original size:19 final size:20
Alignment explanation
Indices: 8149016--8149058 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
8149006 TAAAGCTAAT
*
8149016 AAAAATCTAAAATTTTTTGA
1 AAAAATCTAAAATATTTTGA
8149036 AAAAATCTAAACA-ATTTT-A
1 AAAAATCTAAA-ATATTTTGA
8149055 AAAA
1 AAAA
8149059 TTATGAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 5 0.24
20 15 0.71
21 1 0.05
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAATCTAAAATATTTTGA
Found at i:8149196 original size:16 final size:16
Alignment explanation
Indices: 8149165--8149218 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
8149155 TATTTAGGAT
*
8149165 TTTTATTAAATTTAAAA
1 TTTT-TTAATTTTAAAA
*
8149182 TTTTTTATTTTTAAAA
1 TTTTTTAATTTTAAAA
* *
8149198 ATTTTTAATTTTATAA
1 TTTTTTAATTTTAAAA
8149214 TTTTT
1 TTTTT
8149219 AGCATATTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
16 27 0.87
17 4 0.13
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTTTAATTTTAAAA
Found at i:8149483 original size:10 final size:11
Alignment explanation
Indices: 8149456--8149484 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
8149446 AATCTTTTAA
8149456 TTTTTAATAAT
1 TTTTTAATAAT
8149467 TTTTTAA-AAT
1 TTTTTAATAAT
8149477 TTTTTAAT
1 TTTTTAAT
8149485 TTCTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTTTAATAAT
Found at i:8149539 original size:21 final size:21
Alignment explanation
Indices: 8149515--8149588 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 21
8149505 TTTAGTTTTT
*
8149515 TTTTTATAATTTTTCAAAATA
1 TTTTTATAATTTTTAAAAATA
* * *
8149536 -TTTTAGATTTTTTAAAAAAA
1 TTTTTATAATTTTTAAAAATA
* * * *
8149556 ATTTAATAATTTTTGAAAATT
1 TTTTTATAATTTTTAAAAATA
8149577 TTTTTATAATTT
1 TTTTTATAATTT
8149589 AAAAAAATTA
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
20 16 0.40
21 24 0.60
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTTTATAATTTTTAAAAATA
Found at i:8151409 original size:21 final size:21
Alignment explanation
Indices: 8151380--8151432 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
8151370 TATATGTTTT
*
8151380 TAAAAATTTTATTTAATCAAC
1 TAAATATTTTATTTAATCAAC
* * *
8151401 TAAATATTTAATTTAATTAAT
1 TAAATATTTTATTTAATCAAC
8151422 TAAAATATTTT
1 T-AAATATTTT
8151433 TAATTTATGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
TAAATATTTTATTTAATCAAC
Found at i:8151965 original size:27 final size:26
Alignment explanation
Indices: 8151921--8151971 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 26
8151911 TAAGTACTAA
8151921 ATATTTTTTTATAAGA-TTATTTTGG
1 ATATTTTTTTATAAGATTTATTTTGG
*
8151946 ATATTTTGTATTATATGATTTATTTT
1 ATATTTT-T-TTATAAGATTTATTTT
8151972 TCATATAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 7 0.32
26 1 0.05
27 7 0.32
28 7 0.32
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (26 bp):
ATATTTTTTTATAAGATTTATTTTGG
Found at i:8151977 original size:28 final size:25
Alignment explanation
Indices: 8151921--8151977 Score: 60
Period size: 28 Copynumber: 2.2 Consensus size: 25
8151911 TAAGTACTAA
*
8151921 ATATTTTTTTATAAGATTATTTTGG
1 ATATTTTTTTATAAGATTATTTTGC
* *
8151946 ATATTTTGTATTATATGATTTATTTTTC
1 ATATTTT-T-TTATAAGA-TTATTTTGC
8151974 ATAT
1 ATAT
8151978 AACATCAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 7 0.27
26 1 0.04
27 7 0.27
28 11 0.42
ACGTcount: A:0.28, C:0.02, G:0.09, T:0.61
Consensus pattern (25 bp):
ATATTTTTTTATAAGATTATTTTGC
Done.