Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 37 of 131
Found at i:8152010 original size:16 final size:16
Alignment explanation
Indices: 8151984--8152022 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
8151974 ATATAACATC
8151984 AAATA-TAATAATATA
1 AAATATTAATAATATA
*
8151999 AAATATTAATAATTTA
1 AAATATTAATAATATA
*
8152015 TAATATTA
1 AAATATTA
8152023 TGTCAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATATTAATAATATA
Found at i:8155241 original size:21 final size:22
Alignment explanation
Indices: 8155199--8155247 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
8155189 AACCTAAAAT
* *
8155199 TAAATACAAAGAAGTCAATAAA
1 TAAATACAAAAAAATCAATAAA
8155221 TAAATACAAAAAAAT-AATAAA
1 TAAATACAAAAAAATCAATAAA
*
8155242 CAAATA
1 TAAATA
8155248 TATATCTAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.69, C:0.08, G:0.04, T:0.18
Consensus pattern (22 bp):
TAAATACAAAAAAATCAATAAA
Found at i:8155394 original size:14 final size:14
Alignment explanation
Indices: 8155375--8155407 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8155365 ACTCCATTCC
8155375 TTTTTT-TTTTTACT
1 TTTTTTGTTTTTA-T
8155389 TTTTTTGTTTTTAT
1 TTTTTTGTTTTTAT
8155403 TTTTT
1 TTTTT
8155408 AATTAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.06, C:0.03, G:0.03, T:0.88
Consensus pattern (14 bp):
TTTTTTGTTTTTAT
Found at i:8157355 original size:18 final size:18
Alignment explanation
Indices: 8157334--8157373 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
8157324 ACCCCTTTTT
8157334 TAATTAAAAATAAATAAA
1 TAATTAAAAATAAATAAA
8157352 TAATT-AAAATAAATAAA
1 TAATTAAAAATAAATAAA
8157369 -AATTA
1 TAATTA
8157374 TCATGCAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.19
17 12 0.57
18 5 0.24
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TAATTAAAAATAAATAAA
Found at i:8157410 original size:20 final size:21
Alignment explanation
Indices: 8157385--8157427 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
8157375 CATGCAAATA
8157385 ATATCATG-TAATAATATAAT
1 ATATCATGCTAATAATATAAT
8157405 ATATCATGCCATAATAATATAAT
1 ATATCATG-C-TAATAATATAAT
8157428 CATGCAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.40
23 12 0.60
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (21 bp):
ATATCATGCTAATAATATAAT
Found at i:8157440 original size:19 final size:18
Alignment explanation
Indices: 8157385--8157440 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
8157375 CATGCAAATA
*
8157385 ATATCATGTAATAATATAAT
1 ATATCATGCAAT--TATAAT
* *
8157405 ATATCATGCCATAATAAT
1 ATATCATGCAATTATAAT
8157423 ATAATCATGCAATTATAA
1 AT-ATCATGCAATTATAA
8157441 GATGTCACGC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 7 0.23
19 13 0.43
20 10 0.33
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.36
Consensus pattern (18 bp):
ATATCATGCAATTATAAT
Found at i:8157711 original size:14 final size:13
Alignment explanation
Indices: 8157694--8157735 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
8157684 AAAAATATCA
8157694 AAATAAAAGCATGC
1 AAATAAAA-CATGC
8157708 AAATAAAATCAT--
1 AAATAAAA-CATGC
8157720 AAATAAAACATGC
1 AAATAAAACATGC
8157733 AAA
1 AAA
8157736 CAATAAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 3 0.12
12 8 0.32
13 3 0.12
14 11 0.44
ACGTcount: A:0.64, C:0.12, G:0.07, T:0.17
Consensus pattern (13 bp):
AAATAAAACATGC
Found at i:8157731 original size:25 final size:24
Alignment explanation
Indices: 8157679--8157735 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 24
8157669 ATTATATGTT
*
8157679 CATGCAAAAATATCAAAATAAAAG
1 CATGCAAAAAAATCAAAATAAAAG
8157703 CATGCAAATAAAATCATAAATAAAA-
1 CATGCAAA-AAAATCA-AAATAAAAG
8157728 CATGCAAA
1 CATGCAAA
8157736 CAATAAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 8 0.27
25 14 0.47
26 8 0.27
ACGTcount: A:0.61, C:0.14, G:0.07, T:0.18
Consensus pattern (24 bp):
CATGCAAAAAAATCAAAATAAAAG
Found at i:8158905 original size:21 final size:21
Alignment explanation
Indices: 8158866--8158905 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8158856 AATCTTATGT
*
8158866 TTTTTATTTTTTTGATTTTCC
1 TTTTTATTTTTTTCATTTTCC
*
8158887 TTTTTATTTTTTTCCTTTT
1 TTTTTATTTTTTTCATTTT
8158906 GATTTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.10, G:0.03, T:0.80
Consensus pattern (21 bp):
TTTTTATTTTTTTCATTTTCC
Found at i:8158911 original size:14 final size:15
Alignment explanation
Indices: 8158881--8158914 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
8158871 ATTTTTTTGA
*
8158881 TTTTCCTTTTTATTT
1 TTTTCCTTTTGATTT
8158896 TTTTCCTTTTGATTT
1 TTTTCCTTTTGATTT
8158911 TTTT
1 TTTT
8158915 TACTCTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.12, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTCCTTTTGATTT
Found at i:8158911 original size:21 final size:21
Alignment explanation
Indices: 8158866--8158912 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8158856 AATCTTATGT
* *
8158866 TTTTTATTTTTTTGATTTTCC
1 TTTTTATTTTTTTCATTTTCA
* *
8158887 TTTTTATTTTTTTCCTTTTGA
1 TTTTTATTTTTTTCATTTTCA
8158908 TTTTT
1 TTTTT
8158913 TTTACTCTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.79
Consensus pattern (21 bp):
TTTTTATTTTTTTCATTTTCA
Found at i:8158951 original size:6 final size:6
Alignment explanation
Indices: 8158937--8159015 Score: 59
Period size: 6 Copynumber: 13.0 Consensus size: 6
8158927 AAAAATAATA
* ** * * *
8158937 AAAACT AAAATT AAAAACC AAAATC AAAATT AAGACT AAAATT AAAATT
1 AAAATT AAAATT -AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
* * **
8158986 GAAATT AAAACT AAAAGC AAAATT AAAATT
1 AAAATT AAAATT AAAATT AAAATT AAAATT
8159016 TTCTGGCTAT
Statistics
Matches: 56, Mismatches: 16, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
6 52 0.93
7 4 0.07
ACGTcount: A:0.65, C:0.09, G:0.04, T:0.23
Consensus pattern (6 bp):
AAAATT
Found at i:8158983 original size:24 final size:24
Alignment explanation
Indices: 8158950--8159015 Score: 78
Period size: 24 Copynumber: 2.8 Consensus size: 24
8158940 ACTAAAATTA
* * *
8158950 AAAACCAAAATCAAAATTAAGACT
1 AAAAGCAAAATTAAAATTAAAACT
** *
8158974 AAAATTAAAATTGAAATTAAAACT
1 AAAAGCAAAATTAAAATTAAAACT
8158998 AAAAGCAAAATTAAAATT
1 AAAAGCAAAATTAAAATT
8159016 TTCTGGCTAT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.64, C:0.09, G:0.05, T:0.23
Consensus pattern (24 bp):
AAAAGCAAAATTAAAATTAAAACT
Found at i:8159413 original size:43 final size:43
Alignment explanation
Indices: 8159324--8159420 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
8159314 GGCACAAAGC
* * * * *
8159324 TTAAAAACTTTAAATAACTCATCTAAACAGAGGTTTAACAATT
1 TTAAAAACTTTAAATAACTCATCTAAACAGAAGCTCAAAAACT
** * *
8159367 TTAAAAACTTTAAATGGCTCATTTAAGCAGAAGCTCAAAAACT
1 TTAAAAACTTTAAATAACTCATCTAAACAGAAGCTCAAAAACT
8159410 TTAAATAACTT
1 TTAAA-AACTT
8159421 ATCTAACTAA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
43 39 0.89
44 5 0.11
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.32
Consensus pattern (43 bp):
TTAAAAACTTTAAATAACTCATCTAAACAGAAGCTCAAAAACT
Found at i:8159678 original size:84 final size:84
Alignment explanation
Indices: 8159530--8159686 Score: 199
Period size: 84 Copynumber: 1.9 Consensus size: 84
8159520 ATGCCTGGAG
* * * * **
8159530 GTCTTACAAATCTTGATTCTAAAATCAATTTAACTAGAAAAACTTATGAATTTTGCCCAAAAGAC
1 GTCTTACAAATCTTGACTCTAAAATAAATTCAACTAGAAAAACTTATAAATCATGCCCAAAAGAC
*
8159595 TTGGAGATTATGTTCAAAA
66 TTAGAGATTATGTTCAAAA
* * * *
8159614 GTCTTACAAATCTTGACTCTAAACTAAATTCAGCTCAG-AAAACTTATAAATCATGCCTAGAAGA
1 GTCTTACAAATCTTGACTCTAAAATAAATTCAACT-AGAAAAACTTATAAATCATGCCCAAAAGA
8159678 CTTAGAGAT
65 CTTAGAGAT
8159687 GATATTTAGA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
84 59 0.97
85 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (84 bp):
GTCTTACAAATCTTGACTCTAAAATAAATTCAACTAGAAAAACTTATAAATCATGCCCAAAAGAC
TTAGAGATTATGTTCAAAA
Found at i:8159703 original size:84 final size:84
Alignment explanation
Indices: 8159530--8159710 Score: 195
Period size: 84 Copynumber: 2.2 Consensus size: 84
8159520 ATGCCTGGAG
* * * * **
8159530 GTCTTACAAATCTTGATTCTAAAATCAATTTAACTAGAAAAACTTATGAATTTTGCCCAAAAGAC
1 GTCTTACAAATCTTGACTCTAAAATAAATTCAACTAGAAAAACTTATAAATCATGCCCAAAAGAC
* * *
8159595 TTGGAGATTATGTTCAAAA
66 TTAGAGATGATATTCAAAA
* * * *
8159614 GTCTTACAAATCTTGACTCTAAACTAAATTCAGCTCAG-AAAACTTATAAATCATGCCTAGAAGA
1 GTCTTACAAATCTTGACTCTAAAATAAATTCAACT-AGAAAAACTTATAAATCATGCCCAAAAGA
* *
8159678 CTTAGAGATGATATT-TAGA
65 CTTAGAGATGATATTCAAAA
8159697 GATCTTACAAATCT
1 G-TCTTACAAATCT
8159711 CAATTCTAAA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
83 3 0.04
84 75 0.94
85 2 0.03
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (84 bp):
GTCTTACAAATCTTGACTCTAAAATAAATTCAACTAGAAAAACTTATAAATCATGCCCAAAAGAC
TTAGAGATGATATTCAAAA
Found at i:8160240 original size:18 final size:18
Alignment explanation
Indices: 8160196--8160240 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
8160186 AAATACATCA
*
8160196 CATGAAATGAATGTAATG
1 CATGAAATGAATGGAATG
*
8160214 CAT-ATAATGCATGGAATG
1 CATGA-AATGAATGGAATG
8160232 CATGAAATG
1 CATGAAATG
8160241 TTTGCGATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.04
18 21 0.91
19 1 0.04
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (18 bp):
CATGAAATGAATGGAATG
Found at i:8161094 original size:12 final size:11
Alignment explanation
Indices: 8161072--8161097 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8161062 AGTTTCATTC
8161072 TTTTCTTTTTT
1 TTTTCTTTTTT
8161083 TTTTCTTTTTT
1 TTTTCTTTTTT
8161094 TTTT
1 TTTT
8161098 AGATTATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:8161377 original size:13 final size:13
Alignment explanation
Indices: 8161359--8161384 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8161349 TTACCTTTCA
8161359 CCTTTTTTTTTTT
1 CCTTTTTTTTTTT
8161372 CCTTTTTTTTTTT
1 CCTTTTTTTTTTT
8161385 TTGCATAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
CCTTTTTTTTTTT
Found at i:8166527 original size:19 final size:19
Alignment explanation
Indices: 8166503--8166564 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
8166493 AATATCTTAT
8166503 ATCATGCAATAATAATATA
1 ATCATGCAATAATAATATA
* *
8166522 ATCATGCAATTATAAGAT-
1 ATCATGCAATAATAATATA
8166540 ATCATGCAAATAAGTAAT-TA
1 ATCATGC-AATAA-TAATATA
8166560 ATCAT
1 ATCAT
8166565 ACAAATATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
18 7 0.19
19 21 0.58
20 8 0.22
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.32
Consensus pattern (19 bp):
ATCATGCAATAATAATATA
Found at i:8166562 original size:38 final size:37
Alignment explanation
Indices: 8166501--8166573 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
8166491 ATAATATCTT
* *
8166501 ATATCATGCAATAATAATATAATCATGCAATTATAAG
1 ATATCATGCAATAATAATATAATCATACAAATATAAG
8166538 ATATCATGCAAATAAGTAAT-TAATCATACAAATATA
1 ATATCATGC-AATAA-TAATATAATCATACAAATATA
8166574 TTATAAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
37 9 0.28
38 19 0.59
39 4 0.12
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.32
Consensus pattern (37 bp):
ATATCATGCAATAATAATATAATCATACAAATATAAG
Found at i:8166715 original size:19 final size:21
Alignment explanation
Indices: 8166659--8166727 Score: 61
Period size: 22 Copynumber: 3.3 Consensus size: 21
8166649 ATTGTCACAC
*
8166659 AAATATAATATTAATCATACAA
1 AAATAT-ATAATAATCATACAA
8166681 AAATATATAATAAATCATACAA
1 AAATATATAAT-AATCATACAA
** *
8166703 TTA-ATA-AATAATCATGCAA
1 AAATATATAATAATCATACAA
*
8166722 ATATAT
1 AAATAT
8166728 TTATTATTCA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 11 0.28
20 5 0.12
21 7 0.17
22 17 0.43
ACGTcount: A:0.58, C:0.09, G:0.01, T:0.32
Consensus pattern (21 bp):
AAATATATAATAATCATACAA
Found at i:8168031 original size:6 final size:6
Alignment explanation
Indices: 8168017--8168095 Score: 68
Period size: 6 Copynumber: 13.0 Consensus size: 6
8168007 AAAAATAATA
* * * * * *
8168017 AAAACT AAAATT AAAAACT AAAATC AAAATT AAGACT AAAATT AAAATC
1 AAAATT AAAATT -AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
* **
8168066 AAAATT AAAAAT AAAAGC AAAATT AAAATT
1 AAAATT AAAATT AAAATT AAAATT AAAATT
8168096 TTTGGACTTT
Statistics
Matches: 56, Mismatches: 16, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
6 51 0.91
7 5 0.09
ACGTcount: A:0.67, C:0.08, G:0.03, T:0.23
Consensus pattern (6 bp):
AAAATT
Found at i:8168080 original size:24 final size:24
Alignment explanation
Indices: 8168030--8168095 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
8168020 ACTAAAATTA
* *
8168030 AAAACTAAAATCAAAATTAAGACT
1 AAAACTAAAATCAAAATTAAAAAT
*
8168054 AAAATTAAAATCAAAATTAAAAAT
1 AAAACTAAAATCAAAATTAAAAAT
*
8168078 AAAAGC-AAAATTAAAATT
1 AAAA-CTAAAATCAAAATT
8168096 TTTGGACTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.67, C:0.08, G:0.03, T:0.23
Consensus pattern (24 bp):
AAAACTAAAATCAAAATTAAAAAT
Found at i:8174624 original size:24 final size:24
Alignment explanation
Indices: 8174579--8174625 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8174569 TGTTTTCTGT
* * * *
8174579 TTTTTTTTTTTTTTTCCTTTTTCC
1 TTTTTCTTTTATTTCCCATTTTCC
8174603 TTTTTCTTTTATTTCCCATTTTC
1 TTTTTCTTTTATTTCCCATTTTC
8174626 ATTAATATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (24 bp):
TTTTTCTTTTATTTCCCATTTTCC
Found at i:8185396 original size:9 final size:10
Alignment explanation
Indices: 8185370--8185396 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8185360 AAATATATCA
8185370 AAATTTTTTC
1 AAATTTTTTC
8185380 AAATTTTTTC
1 AAATTTTTTC
8185390 AAATTTT
1 AAATTTT
8185397 GCATATATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (10 bp):
AAATTTTTTC
Found at i:8185451 original size:21 final size:20
Alignment explanation
Indices: 8185419--8185477 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 20
8185409 TATGTGATGA
8185419 GATTTTTCAATTTATTAATTTT
1 GATTTTT-AATTT-TTAATTTT
*
8185441 GATTTTTAA-TTTTACTTTT
1 GATTTTTAATTTTTAATTTT
*
8185460 GATTTATTTATTTTTAAT
1 GATTT-TTAATTTTTAAT
8185478 AAAAACCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 12 0.38
20 5 0.16
21 8 0.25
22 7 0.22
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.66
Consensus pattern (20 bp):
GATTTTTAATTTTTAATTTT
Found at i:8185956 original size:27 final size:28
Alignment explanation
Indices: 8185926--8185985 Score: 95
Period size: 27 Copynumber: 2.2 Consensus size: 28
8185916 TTGTTACTTT
* *
8185926 TATATAATTTTTATTTTT-ATTTTTACA
1 TATATAATTTTTATTTTTAATTTATAAA
8185953 TATATAATTTTTATTTTTAATTTATAAA
1 TATATAATTTTTATTTTTAATTTATAAA
8185981 TATAT
1 TATAT
8185986 GTGAGTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 18 0.60
28 12 0.40
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (28 bp):
TATATAATTTTTATTTTTAATTTATAAA
Found at i:8185978 original size:20 final size:21
Alignment explanation
Indices: 8185938--8185979 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8185928 TATAATTTTT
8185938 ATTTTTATTTTTACATATATA
1 ATTTTTATTTTTACATATATA
*
8185959 ATTTTTATTTTTA-ATTTATA
1 ATTTTTATTTTTACATATATA
8185979 A
1 A
8185980 ATATATGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTTTATTTTTACATATATA
Found at i:8186128 original size:14 final size:14
Alignment explanation
Indices: 8186103--8186129 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8186093 ATTTAAAAAA
8186103 AAAATTTTAAACTC
1 AAAATTTTAAACTC
8186117 AAAATTTTAAACT
1 AAAATTTTAAACT
8186130 AAATTAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (14 bp):
AAAATTTTAAACTC
Found at i:8189318 original size:15 final size:15
Alignment explanation
Indices: 8189298--8189326 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8189288 AATATATCGT
8189298 AATAAATCTATAGTC
1 AATAAATCTATAGTC
8189313 AATAAATCTATAGT
1 AATAAATCTATAGT
8189327 AATGATAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.34
Consensus pattern (15 bp):
AATAAATCTATAGTC
Found at i:8193107 original size:20 final size:20
Alignment explanation
Indices: 8193082--8193127 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
8193072 AATTCAACTG
8193082 TCATGCCCTATCC-ATCTTAC
1 TCATGCCCTA-CCTATCTTAC
*
8193102 TCATGCCCTACCTATCTTTC
1 TCATGCCCTACCTATCTTAC
8193122 TCATGC
1 TCATGC
8193128 ATCCTGTATC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.17, C:0.39, G:0.07, T:0.37
Consensus pattern (20 bp):
TCATGCCCTACCTATCTTAC
Found at i:8196717 original size:23 final size:26
Alignment explanation
Indices: 8196691--8196743 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
8196681 TTAAAATTTT
*
8196691 TTAAAATT-ATTT-TTAA-TAATCAA
1 TTAAAATTAATTTAATAACTAATCAA
8196714 TTAAAATTAATTTAATAACTAATCAA
1 TTAAAATTAATTTAATAACTAATCAA
8196740 TTAA
1 TTAA
8196744 TCAAATTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 8 0.31
24 4 0.15
25 3 0.12
26 11 0.42
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (26 bp):
TTAAAATTAATTTAATAACTAATCAA
Found at i:8197494 original size:19 final size:19
Alignment explanation
Indices: 8197467--8197504 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8197457 TTTTTTTCTC
*
8197467 ACACGTAATATATTGGATT
1 ACACATAATATATTGGATT
8197486 ACACATAATATATTGGATT
1 ACACATAATATATTGGATT
8197505 GAAAATTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (19 bp):
ACACATAATATATTGGATT
Found at i:8197808 original size:3 final size:3
Alignment explanation
Indices: 8197800--8197834 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
8197790 ACATATAATC
8197800 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8197835 CTATAATAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8199493 original size:590 final size:581
Alignment explanation
Indices: 8198343--8199498 Score: 1543
Period size: 590 Copynumber: 2.0 Consensus size: 581
8198333 AGTTAAAGCT
* * *
8198343 TTTTTTATTATTATTAAGCTTTATATTGTATTATATTTGATTGATAGACAAACTTAAATTATGTG
1 TTTTTTATTATTATTAAGCTGTATATTGTATTATATTTGAGTAATAGACAAACTTAAATTATGTG
* * * *
8198408 ATAAGAAAAGATATTGAATAGATGTACTTTTAAGGCAAAAGAAAGTATAAAAAGAAACAATTAAG
66 ATAAGAAAAGATATTAAATAAAAGTACTTTTAAAGCAAAAGAAAGTATAAAAAGAAACAATTAAG
* *
8198473 TAATTGAATAGTAGGAAAGGGGATTTACGAGTCAAAAACAAAAATAAAAAAAATTCTCACATTTA
131 TAATTGAATAGCAGGAAAGGGGATTTACGAGTCAAAAACAAAAATAAAAAAAAATCTCACATTTA
8198538 TAGTTAAAAAAGTAAGAAGTGCACCACCTATAGTTTGTTGACTAGCAGTAGCCTTTTCGAACTCC
196 TAGTTAAAAAAGTAAGAAGTGCACCACCTATAGTTTGTTGACTAGCAGTAGCCTTTTCGAACTCC
* *
8198603 ATATACAGTTTCGAAAAATGAAAAAACAAATAAAATTGTTTACAAATATTTGTTATCATAGATCA
261 ATATACAGTTTCGAAAAATGAAAAAACAAACAAAATTATTTACAAATATTTGTTATCATAGATCA
* * *
8198668 CGTAAAAAAAATCCCCATGATTCAAACTTAGGTAATGAACAGCATACAATATGACAGATCATGAA
326 CATAAAAAAAATCCCCATGATTAAAACTTAGGTAATGAACAGCATACAATATGACAGATCAGGAA
*
8198733 GTTACTAATTGTTAAATCATTAGCTTAAAGTAATAGAGAATGGAAATAGTTTTTTGTTATGTAAT
391 GTTACTAATTGTTAAATCATTAGCTTAAAGTAATAGAGAAAGGAAATAGTTTTTTGTTATGTAAT
* ** * *
8198798 GTTGACCATCATGATGGTTGTACTTGGAGTTTGAAATATATACTTCTGTTAAGTTACCAAATGTG
456 GTTAACCATCATGATGGTTGTACTTCAAATTTGAAATATATACTTCTATTAAGTTACCAAATGTG
* * * *
8198863 AAAGAAGATTGCTAAATTGTGCGGTTTTTAGAAAGATGCTTAGAAAATTTGAAGTTGAGGC
521 AAACAAGATGGCTAAACTGTGCGATTTTTAGAAAGATGCTTAGAAAATTTGAAGTTGAGGC
* * *
8198924 TTTTTTATTATTATTAAGCTGTATATTTTGTTATATTTGAGTAATAGACAAACTTAGATTATGTG
1 TTTTTTATTATTATTAAGCTGTATATTGTATTATATTTGAGTAATAGACAAACTTAAATTATGTG
* * * *
8198989 ATAGGAAAGGATATTAAATAAAAGTACTTTTAAAGCAAAA-AGAAGTATGAAAATAAACAATTAA
66 ATAAGAAAAGATATTAAATAAAAGTACTTTTAAAGCAAAAGA-AAGTATAAAAAGAAACAATTAA
* * * * *
8199053 GTAATTGGGTTAATTAGCAGGGAAGGGGATTTATGAGTTAAAGATAAAAATAAAAAAAAAATCTC
130 GTAATT--G--AA-TAGCAGGAAAGGGGATTTACGAGTCAAAAACAAAAAT-AAAAAAAAATCTC
* * * * *
8199118 ACATTTGTAGTTGAAAAAGTAA-AAGGTGCACCACTTATAGTTTTTTTACTAGCAGTAGCCCTTT
189 ACATTTATAGTTAAAAAAGTAAGAA-GTGCACCACCTATAGTTTGTTGACTAGCAGTAG-CCTTT
* * ** *** *
8199182 T-GAACTCTATATGCAGTTTTTAGAGGGTGAGAAAACAAACAAAATTATTTACAAATATTTGTTA
252 TCGAACTCCATATACAGTTTCGA-AAAATGAAAAAACAAACAAAATTATTTACAAATATTTGTTA
* * * * * * ** *
8199246 TCATGGATCACATAAAAAAGATATTCTCGTGATTAAAAACTTAGGTAATGTATAGCATGTAGTAT
316 TCATAGATCACATAAAAAA-A-ATCCCCATGATT-AAAACTTAGGTAATGAACAGCATACAATAT
* *
8199311 GACAGATCAGGAAGTTACTAATTGTTAAATCATTAGCTT-AAGTGATGGA-AAAGGAAAATAGTT
378 GACAGATCAGGAAGTTACTAATTGTTAAATCATTAGCTTAAAGTAATAGAGAAAGG-AAATAGTT
* *
8199374 TTTTGTTATGTAATGTTAACGATCATGATGGTTGTATTTCAAATTTGAAATATATACTTCTATTA
442 TTTTGTTATGTAATGTTAACCATCATGATGGTTGTACTTCAAATTTGAAATATATACTTCTATTA
* *
8199439 AGTTACCAAATGTGAAACAAGATGGCTGAGCTGTGC-ATTTTGTA-AAATGATGCTTAGAAA
507 AGTTACCAAATGTGAAACAAGATGGCTAAACTGTGCGATTTT-TAGAAA-GATGCTTAGAAA
8199499 CAATGGTGTG
Statistics
Matches: 495, Mismatches: 64, Indels: 23
0.85 0.11 0.04
Matches are distributed among these distances:
580 1 0.00
581 119 0.24
583 1 0.00
585 2 0.00
586 33 0.07
587 79 0.16
588 58 0.12
589 12 0.02
590 128 0.26
591 62 0.13
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.33
Consensus pattern (581 bp):
TTTTTTATTATTATTAAGCTGTATATTGTATTATATTTGAGTAATAGACAAACTTAAATTATGTG
ATAAGAAAAGATATTAAATAAAAGTACTTTTAAAGCAAAAGAAAGTATAAAAAGAAACAATTAAG
TAATTGAATAGCAGGAAAGGGGATTTACGAGTCAAAAACAAAAATAAAAAAAAATCTCACATTTA
TAGTTAAAAAAGTAAGAAGTGCACCACCTATAGTTTGTTGACTAGCAGTAGCCTTTTCGAACTCC
ATATACAGTTTCGAAAAATGAAAAAACAAACAAAATTATTTACAAATATTTGTTATCATAGATCA
CATAAAAAAAATCCCCATGATTAAAACTTAGGTAATGAACAGCATACAATATGACAGATCAGGAA
GTTACTAATTGTTAAATCATTAGCTTAAAGTAATAGAGAAAGGAAATAGTTTTTTGTTATGTAAT
GTTAACCATCATGATGGTTGTACTTCAAATTTGAAATATATACTTCTATTAAGTTACCAAATGTG
AAACAAGATGGCTAAACTGTGCGATTTTTAGAAAGATGCTTAGAAAATTTGAAGTTGAGGC
Found at i:8205882 original size:18 final size:18
Alignment explanation
Indices: 8205859--8205894 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
8205849 AACATGTCAA
8205859 ATAAAAAA-CACAATTGAT
1 ATAAAAAACCA-AATTGAT
8205877 ATAAAAAACCAAATTGAT
1 ATAAAAAACCAAATTGAT
8205895 TCTTTGGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.61, C:0.11, G:0.06, T:0.22
Consensus pattern (18 bp):
ATAAAAAACCAAATTGAT
Found at i:8207936 original size:7 final size:7
Alignment explanation
Indices: 8207916--8208025 Score: 74
Period size: 7 Copynumber: 16.7 Consensus size: 7
8207906 TCCAAATCCC
*
8207916 AAACCCC
1 AAACCCT
8207923 AAACCCT
1 AAACCCT
8207930 AAACCCT
1 AAACCCT
*
8207937 AAA-TCT
1 AAACCCT
8207943 AAACCCT
1 AAACCCT
**
8207950 AAAATCT
1 AAACCCT
8207957 -AACCCT
1 AAACCCT
8207963 AAACCCT
1 AAACCCT
*
8207970 -AACCCA
1 AAACCCT
*
8207976 AAAACC-
1 AAACCCT
8207982 -AACCCT
1 AAACCCT
*
8207988 AAACCTT
1 AAACCCT
*
8207995 GAAGCCCT
1 -AAACCCT
*
8208003 -AACTCT
1 AAACCCT
8208009 -AA-CCT
1 AAACCCT
8208014 AAACCCT
1 AAACCCT
8208021 AAACC
1 AAACC
8208026 AACCTGCAAA
Statistics
Matches: 79, Mismatches: 16, Indels: 16
0.71 0.14 0.14
Matches are distributed among these distances:
5 6 0.08
6 22 0.28
7 46 0.58
8 5 0.06
ACGTcount: A:0.44, C:0.39, G:0.02, T:0.15
Consensus pattern (7 bp):
AAACCCT
Found at i:8207948 original size:20 final size:20
Alignment explanation
Indices: 8207923--8207992 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 20
8207913 CCCAAACCCC
*
8207923 AAACCCTAAACCCTAAATCT
1 AAACCCTAAACCCTAAAACT
** **
8207943 AAACCCTAAAATCTAACCCT
1 AAACCCTAAACCCTAAAACT
*
8207963 AAACCCT-AACCCAAAAAC-
1 AAACCCTAAACCCTAAAACT
*
8207981 CAACCCTAAACC
1 AAACCCTAAACC
8207993 TTGAAGCCCT
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
18 6 0.15
19 10 0.26
20 23 0.59
ACGTcount: A:0.47, C:0.39, G:0.00, T:0.14
Consensus pattern (20 bp):
AAACCCTAAACCCTAAAACT
Found at i:8207971 original size:13 final size:13
Alignment explanation
Indices: 8207917--8208022 Score: 76
Period size: 13 Copynumber: 8.2 Consensus size: 13
8207907 CCAAATCCCA
*
8207917 AACCCCAAACCCT
1 AACCCTAAACCCT
*
8207930 AAACCCTAAA-TCT
1 -AACCCTAAACCCT
**
8207943 AAACCCTAAAATCT
1 -AACCCTAAACCCT
8207957 AACCCTAAACCCT
1 AACCCTAAACCCT
* *
8207970 AACCCAAAAACC-
1 AACCCTAAACCCT
*
8207982 AACCCTAAACCTT
1 AACCCTAAACCCT
*
8207995 GAAGCCCT-AACTCT
1 -AA-CCCTAAACCCT
8208009 AA-CCTAAACCCT
1 AACCCTAAACCCT
8208021 AA
1 AA
8208023 ACCAACCTGC
Statistics
Matches: 75, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
11 3 0.04
12 16 0.21
13 35 0.47
14 17 0.23
15 4 0.05
ACGTcount: A:0.43, C:0.39, G:0.02, T:0.16
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:8208125 original size:32 final size:31
Alignment explanation
Indices: 8208089--8208159 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 31
8208079 CCATGCATTC
8208089 TTATATGATCATGCATTCAT-ACTTTATTCATA
1 TTATATG-TCATGCATTCATCACTTTATT-ATA
*
8208121 TTATATTGTCATGCATTCATCATTTTATTATA
1 TTATA-TGTCATGCATTCATCACTTTATTATA
8208153 TTCATAT
1 TT-ATAT
8208160 ATTTCACGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
32 23 0.66
33 12 0.34
ACGTcount: A:0.30, C:0.14, G:0.06, T:0.51
Consensus pattern (31 bp):
TTATATGTCATGCATTCATCACTTTATTATA
Found at i:8208200 original size:17 final size:16
Alignment explanation
Indices: 8208175--8208224 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
8208165 ACGTATTTGT
*
8208175 TTTTTAAAAGAAAATA
1 TTTTAAAAAGAAAATA
*
8208191 GTTTTCAAAAGAAAAATA
1 -TTTTAAAAAG-AAAATA
*
8208209 TTTTAAAAATAAAATA
1 TTTTAAAAAGAAAATA
8208225 ATACCTAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
16 6 0.21
17 17 0.59
18 6 0.21
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (16 bp):
TTTTAAAAAGAAAATA
Found at i:8208222 original size:16 final size:16
Alignment explanation
Indices: 8208176--8208224 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
8208166 CGTATTTGTT
*
8208176 TTTTAAAAGAAAATAG
1 TTTTAAAAAAAAATAG
8208192 TTTTCAAAAGAAAAATA-
1 TTTT-AAAA-AAAAATAG
8208209 TTTTAAAAATAAAATA
1 TTTTAAAAA-AAAATA
8208225 ATACCTAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 1 0.03
16 14 0.48
17 8 0.28
18 6 0.21
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (16 bp):
TTTTAAAAAAAAATAG
Found at i:8209146 original size:21 final size:20
Alignment explanation
Indices: 8209120--8209164 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8209110 AGAACCAATT
8209120 GATCCCTT-CCTTGAGGGGATC
1 GATCCCTTGCC-TG-GGGGATC
*
8209141 GATCCCTTGCCTGGGTGATC
1 GATCCCTTGCCTGGGGGATC
8209161 GATC
1 GATC
8209165 TCCTATGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 10 0.45
21 10 0.45
22 2 0.09
ACGTcount: A:0.13, C:0.29, G:0.29, T:0.29
Consensus pattern (20 bp):
GATCCCTTGCCTGGGGGATC
Found at i:8211854 original size:17 final size:16
Alignment explanation
Indices: 8211832--8211865 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
8211822 TTTTTGTTTA
*
8211832 TTTGAAAATATATTTTT
1 TTTGAAAAGAT-TTTTT
8211849 TTTGAAAAGATTTTTT
1 TTTGAAAAGATTTTTT
8211865 T
1 T
8211866 ATTATGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (16 bp):
TTTGAAAAGATTTTTT
Found at i:8212018 original size:10 final size:10
Alignment explanation
Indices: 8212005--8212033 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
8211995 AAATAGGCTA
8212005 AAAATCAAAT
1 AAAATCAAAT
8212015 AAAATCAAAT
1 AAAATCAAAT
8212025 AAAATCAAA
1 AAAATCAAA
8212034 AAATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.17
Consensus pattern (10 bp):
AAAATCAAAT
Found at i:8212059 original size:24 final size:23
Alignment explanation
Indices: 8212011--8212061 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
8212001 GCTAAAAATC
* *
8212011 AAATAAAATCAAATAAAATCAAA
1 AAATAAAATAAAATAAAATAAAA
*
8212034 AAATAAAAATAAAATAAAAAATAAA
1 AAAT-AAAATAAAATAAAATA-AAA
8212059 AAA
1 AAA
8212062 CCTGTGATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 4 0.17
24 13 0.57
25 6 0.26
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (23 bp):
AAATAAAATAAAATAAAATAAAA
Found at i:8212061 original size:19 final size:19
Alignment explanation
Indices: 8212021--8212060 Score: 73
Period size: 18 Copynumber: 2.2 Consensus size: 19
8212011 AAATAAAATC
8212021 AAATAAAATCAAAAAATAA
1 AAATAAAATCAAAAAATAA
8212040 AAATAAAAT-AAAAAATAA
1 AAATAAAATCAAAAAATAA
8212058 AAA
1 AAA
8212061 ACCTGTGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (19 bp):
AAATAAAATCAAAAAATAA
Found at i:8212970 original size:3 final size:3
Alignment explanation
Indices: 8212964--8213002 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
8212954 TTAATGGTTG
* * *
8212964 TAA TAA TAA TAG TAA TAG TAG TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8213003 AACAAGCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8213516 original size:117 final size:117
Alignment explanation
Indices: 8213393--8213852 Score: 433
Period size: 117 Copynumber: 3.9 Consensus size: 117
8213383 ATAAATGACT
*** * * * *
8213393 GGACTGATGTCGTGAGTTTGAAGATGATCTGACCTAAGTCGAGATTAAATGACTGGGATGATGTC
1 GGACTGATGTCACAAGTCTGAAGATGATCTGACCTAAGTCAAGATCAAATGACTGGGACGATGTC
* * * * * *
8213458 GTGAGTCAAAATAAAGTGACCAGGATCAACTCAAAGTCAAAAATAAATGATC
66 GTGAGTCAAAATAAAATGACCAGGATCGAGTCGAGGTCAAAAATGAATGATC
** * * * * * *
8213510 AAACTGATGTAACGAGTCTGACGATGATCTGACCTGAGTCAAGATCAAATGATTAGGACGATGTC
1 GGACTGATGTCACAAGTCTGAAGATGATCTGACCTAAGTCAAGATCAAATGACTGGGACGATGTC
* * * **
8213575 GTGAGTCAAAATAAAACGACTAGGACCGAGTCGAGGTTGAAAATGAATGA-C
66 GTGAGTCAAAATAAAATGACCAGGATCGAGTCGAGGTCAAAAATGAATGATC
** * ** *
8213626 TGGACTGATGTTGCAAGTCT-AACGATGATCTGACCTGAGTTGAGATCAAATGACTGGGATGATG
1 -GGACTGATGTCACAAGTCTGAA-GATGATCTGACCTAAGTCAAGATCAAATGACTGGGACGATG
* * * *
8213690 CCATGAGTCAAAATAAAATGATCAAGATCGAGTCGAGGTCAAAAATGAATGAGT-
64 TCGTGAGTCAAAATAAAATGACCAGGATCGAGTCGAGGTCAAAAATGAATGA-TC
* * ** *
8213744 GGACTGATGTCACAAGTCTGATGATGATCTAACCTGAA-TCAAGATCAAATGACTGAAACAATGT
1 GGACTGATGTCACAAGTCTGAAGATGATCTGACCT-AAGTCAAGATCAAATGACTGGGACGATGT
*** * * *
8213808 CGTGAGTCAAAATAAAGCAACCAAGATCGAGTTGAGGTAAAAAAT
65 CGTGAGTCAAAATAAAATGACCAGGATCGAGTCGAGGTCAAAAAT
8213853 AGATAATCGA
Statistics
Matches: 274, Mismatches: 63, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
116 2 0.01
117 270 0.99
118 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.23
Consensus pattern (117 bp):
GGACTGATGTCACAAGTCTGAAGATGATCTGACCTAAGTCAAGATCAAATGACTGGGACGATGTC
GTGAGTCAAAATAAAATGACCAGGATCGAGTCGAGGTCAAAAATGAATGATC
Found at i:8213795 original size:234 final size:234
Alignment explanation
Indices: 8213381--8213823 Score: 586
Period size: 234 Copynumber: 1.9 Consensus size: 234
8213371 TTGAGATCAT
** * *
8213381 AAATAAATGACTGGACTGATGTCGTGAGTTTGAAGATGATCTGACCTAAGTCGAGATTAAATGAC
1 AAATAAATGACTGGACTGATGTCGCAAGTCTGAAGATGATCTGACCTAAGTCGAGATCAAATGAC
* * * *
8213446 TGGGATGATGTCGTGAGTCAAAATAAAGTGACCAGGATCAACTCAAAGTCAAAAATAAATGATCA
66 TGGGATGATGCCATGAGTCAAAATAAAATGACCAAGATCAACTCAAAGTCAAAAATAAATGATCA
* * * * * *
8213511 AACTGATGTAACGAGTCTGACGATGATCTGACCTGAGTCAAGATCAAATGA-TTAGGACGATGTC
131 AACTGATGTAACAAGTCTGACGATGATCTAACCTGAATCAAGATCAAATGACTGA-AACAATGTC
8213575 GTGAGTCAAAATAAAACGACTAGGACCGAGTCGAGGTTGA
195 GTGAGTCAAAATAAAACGACTAGGACCGAGTCGAGGTTGA
* * * *
8213615 AAATGAATGACTGGACTGATGTTGCAAGTCT-AACGATGATCTGACCTGAGTTGAGATCAAATGA
1 AAATAAATGACTGGACTGATGTCGCAAGTCTGAA-GATGATCTGACCTAAGTCGAGATCAAATGA
* * * * * *
8213679 CTGGGATGATGCCATGAGTCAAAATAAAATGATCAAGATCGAGTCGAGGTCAAAAATGAATGAGT
65 CTGGGATGATGCCATGAGTCAAAATAAAATGACCAAGATCAACTCAAAGTCAAAAATAAATGA-T
** * *
8213744 -GGACTGATGTCACAAGTCTGATGATGATCTAACCTGAATCAAGATCAAATGACTGAAACAATGT
129 CAAACTGATGTAACAAGTCTGACGATGATCTAACCTGAATCAAGATCAAATGACTGAAACAATGT
8213808 CGTGAGTCAAAATAAA
194 CGTGAGTCAAAATAAA
8213824 GCAACCAAGA
Statistics
Matches: 178, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
233 2 0.01
234 173 0.97
235 3 0.02
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (234 bp):
AAATAAATGACTGGACTGATGTCGCAAGTCTGAAGATGATCTGACCTAAGTCGAGATCAAATGAC
TGGGATGATGCCATGAGTCAAAATAAAATGACCAAGATCAACTCAAAGTCAAAAATAAATGATCA
AACTGATGTAACAAGTCTGACGATGATCTAACCTGAATCAAGATCAAATGACTGAAACAATGTCG
TGAGTCAAAATAAAACGACTAGGACCGAGTCGAGGTTGA
Found at i:8223381 original size:10 final size:10
Alignment explanation
Indices: 8223368--8223444 Score: 70
Period size: 10 Copynumber: 7.6 Consensus size: 10
8223358 TTTAAAGGAT
8223368 TTTTTTATTA
1 TTTTTTATTA
*
8223378 TTTTTTATCA
1 TTTTTTATTA
*
8223388 TTTATCATTTATCA
1 -TT-T--TTTATTA
8223402 TTTTTTATTA
1 TTTTTTATTA
8223412 TTTTTTATT-
1 TTTTTTATTA
*
8223421 TCTTTT-TTA
1 TTTTTTATTA
8223430 TTTTTTATT-
1 TTTTTTATTA
8223439 TTTTTT
1 TTTTTT
8223445 CTTTTGGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
8 2 0.04
9 16 0.28
10 26 0.46
11 2 0.04
12 2 0.04
13 2 0.04
14 7 0.12
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTTATTA
Found at i:8223432 original size:18 final size:17
Alignment explanation
Indices: 8223366--8223444 Score: 77
Period size: 17 Copynumber: 4.5 Consensus size: 17
8223356 TTTTTAAAGG
8223366 ATTTTTTTATTATTTTTT
1 ATTTTTTT-TTATTTTTT
** * * * *
8223384 ATCATTTATCATTTATC
1 ATTTTTTTTTATTTTTT
*
8223401 ATTTTTTATTATTTTTT
1 ATTTTTTTTTATTTTTT
8223418 ATTTCTTTTTTATTTTTT
1 ATTT-TTTTTTATTTTTT
8223436 ATTTTTTTT
1 ATTTTTTTT
8223445 CTTTTGGAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
17 27 0.56
18 21 0.44
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (17 bp):
ATTTTTTTTTATTTTTT
Found at i:8223449 original size:7 final size:7
Alignment explanation
Indices: 8223401--8223442 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
8223391 ATCATTTATC
8223401 ATTTTTT
1 ATTTTTT
8223408 ATTATTTT
1 ATT-TTTT
*
8223416 -TTATTT
1 ATTTTTT
*
8223422 CTTTTTT
1 ATTTTTT
8223429 ATTTTTT
1 ATTTTTT
8223436 ATTTTTT
1 ATTTTTT
8223443 TTCTTTTGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
6 3 0.10
7 23 0.77
8 4 0.13
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.83
Consensus pattern (7 bp):
ATTTTTT
Found at i:8223544 original size:17 final size:17
Alignment explanation
Indices: 8223524--8223556 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8223514 ATCAAATCAA
8223524 AAAATA-AAAATAAAAAT
1 AAAATAGAAAA-AAAAAT
8223541 AAAATAGAAAAAAAAA
1 AAAATAGAAAAAAAAA
8223557 ACTTGCAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (17 bp):
AAAATAGAAAAAAAAAT
Found at i:8224397 original size:13 final size:13
Alignment explanation
Indices: 8224381--8224405 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8224371 AAAAAGAACA
8224381 AAAAAATAAAAAT
1 AAAAAATAAAAAT
8224394 AAAAAATAAAAA
1 AAAAAATAAAAA
8224406 AATATTATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:8224446 original size:3 final size:3
Alignment explanation
Indices: 8224440--8224486 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
8224430 GGTAATAGAT
* *
8224440 TAA TAA TAA TAA TAA TAA TAG CAA TAA -AA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8224487 AAACAAGTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:8224769 original size:27 final size:28
Alignment explanation
Indices: 8224737--8224799 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
8224727 TTTACAAATA
8224737 TTTTTTAAAACTTTTATTTGAAAAGATT
1 TTTTTTAAAACTTTTATTTGAAAAGATT
* * *
8224765 TTTTTTTATATTTTTATTTGAAAAGATT
1 TTTTTTAAAACTTTTATTTGAAAAGATT
8224793 TTTTTTA
1 TTTTTTA
8224800 TTGAATCATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (28 bp):
TTTTTTAAAACTTTTATTTGAAAAGATT
Found at i:8224810 original size:27 final size:28
Alignment explanation
Indices: 8224752--8224810 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
8224742 TAAAACTTTT
** *
8224752 ATTTGAAAAGATTTTTTTTTATATTTTT
1 ATTTGAAAAGATTTTTTTTTATATAATC
8224780 ATTTGAAAAGA-TTTTTTTTAT-TGAATC
1 ATTTGAAAAGATTTTTTTTTATAT-AATC
8224807 ATTT
1 ATTT
8224811 TGCATCTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.04
27 15 0.56
28 11 0.41
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.59
Consensus pattern (28 bp):
ATTTGAAAAGATTTTTTTTTATATAATC
Found at i:8228854 original size:3 final size:3
Alignment explanation
Indices: 8228840--8228897 Score: 107
Period size: 3 Copynumber: 19.0 Consensus size: 3
8228830 TTACATATAC
8228840 TAA TACA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8228886 TAA TAA TAA TAA
1 TAA TAA TAA TAA
8228898 AAAACAATTT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 51 0.94
4 3 0.06
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8231802 original size:7 final size:7
Alignment explanation
Indices: 8231792--8231836 Score: 72
Period size: 7 Copynumber: 6.4 Consensus size: 7
8231782 AAAATAATAA
8231792 AAATGGG
1 AAATGGG
8231799 AAATGGG
1 AAATGGG
8231806 AAATGGG
1 AAATGGG
8231813 AAATGGG
1 AAATGGG
* *
8231820 AAGTAGG
1 AAATGGG
8231827 AAATGGG
1 AAATGGG
8231834 AAA
1 AAA
8231837 AATTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.40, T:0.13
Consensus pattern (7 bp):
AAATGGG
Found at i:8233057 original size:187 final size:189
Alignment explanation
Indices: 8232678--8233066 Score: 433
Period size: 187 Copynumber: 2.1 Consensus size: 189
8232668 TAAATTTGGG
* * * *
8232678 AAAAAATAAAAAATAGAAAAA-AAAAATTTTTTGAAATAA-A-TAATTATCCAATGATGAAATTT
1 AAAAAATAAAAATTA-AAAAATTAAAA-TTTTAGAAA-AATATTAATTATCCAATGATGAAATTC
* * *
8232740 TTAAAAATTTTAAATGATAAATTTCCATAAAATTCCTATGCGAAAAATTTTGTCTAAATTTGTCC
63 TTAAAAATTTTAAATGATAAATTTCCATAAAAATCCTAGGCGAAAAATTTTCTCTAAATTTGTCC
* ***
8232805 CAAATGGTGGAATAATTTAGATAAAATTTTAATAACAATAATTAATATTTATTTTTTAAAAA
128 CAAATGGTAGAATAATTTAGATAAAATTTTAATAACAATAATTAATATTTATTTCCAAAAAA
* *
8232867 AAAAGA-AAAAATTAAAAAATTAAAATTTTAGAAAAATATTAATTA-CCAATGGATGAGATTCTT
1 AAAAAATAAAAATTAAAAAATTAAAATTTTAGAAAAATATTAATTATCCAAT-GATGAAATTCTT
* * *
8232930 AGAAATTTTAAATGGTAAA-TTCC-TAAGAAATCTCTAGGTG-AAAATTTTCTCTAAATTTGTCC
65 AAAAATTTTAAATGATAAATTTCCATAA-AAATC-CTAGGCGAAAAATTTTCTCTAAATTTGTCC
* * *
8232992 CGAATGGTAGAATAATTTAGAT-GAATTTTCAATAA-AAGTAATT-GTATTCT-TTTCCAAATAA
128 CAAATGGTAGAATAATTTAGATAAAATTTT-AATAACAA-TAATTAATATT-TATTTCCAAA-AA
8233053 A
189 A
8233054 AAAAAATAAAAAT
1 AAAAAATAAAAAT
8233067 ATTTGATAAT
Statistics
Matches: 169, Mismatches: 20, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
186 22 0.13
187 87 0.51
188 55 0.33
189 5 0.03
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (189 bp):
AAAAAATAAAAATTAAAAAATTAAAATTTTAGAAAAATATTAATTATCCAATGATGAAATTCTTA
AAAATTTTAAATGATAAATTTCCATAAAAATCCTAGGCGAAAAATTTTCTCTAAATTTGTCCCAA
ATGGTAGAATAATTTAGATAAAATTTTAATAACAATAATTAATATTTATTTCCAAAAAA
Found at i:8244865 original size:44 final size:44
Alignment explanation
Indices: 8244712--8245012 Score: 245
Period size: 43 Copynumber: 6.9 Consensus size: 44
8244702 TCGAGAAGCC
* * * * * *
8244712 TTGTTTATTTTTTTCAAAATCGTTGAGCTTTTATTTAGAGGAACC
1 TTGTTTA-TTTTTTCAAAGTCATTGAGCCTCTATTTAGAAGAACT
* * * * * *
8244757 TTCTTTA-TTTTTCAAAG-CTGTTAAGCCTCTAATTAGAGGAGCCT
1 TTGTTTATTTTTTCAAAGTC-ATTGAGCCTCTATTTAGAAGA-ACT
* *
8244801 TAG-TTA-TCTTTCAAAGTCATTGAGCCTCTGA-TTAGAAGAACT
1 TTGTTTATTTTTTCAAAGTCATTGAGCCTCT-ATTTAGAAGAACT
* *
8244843 TTGTTTATTTTTTCAAAGTCATTGAGCCTCTATTTAGAGGAGCT
1 TTGTTTATTTTTTCAAAGTCATTGAGCCTCTATTTAGAAGAACT
* * * *
8244887 TTGTTTATTTTTTTTAAAGTTATTGAGCCTCTATTTAGATG-AGT
1 TTGTTTA-TTTTTTCAAAGTCATTGAGCCTCTATTTAGAAGAACT
* ** ** * *
8244931 TTGTTTATTTTTCCAAAGTTTTTGAGCCTCTGCTTAGAAGAGCC
1 TTGTTTATTTTTTCAAAGTCATTGAGCCTCTATTTAGAAGAACT
* * *
8244975 TTATTTATTTTTTCAAAATCATTAAGCCTCTATTTAGA
1 TTGTTTATTTTTTCAAAGTCATTGAGCCTCTATTTAGA
8245013 GAAGTTTTTA
Statistics
Matches: 206, Mismatches: 41, Indels: 19
0.77 0.15 0.07
Matches are distributed among these distances:
42 5 0.02
43 85 0.41
44 80 0.39
45 36 0.17
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (44 bp):
TTGTTTATTTTTTCAAAGTCATTGAGCCTCTATTTAGAAGAACT
Found at i:8244958 original size:132 final size:129
Alignment explanation
Indices: 8244705--8245013 Score: 350
Period size: 132 Copynumber: 2.3 Consensus size: 129
8244695 ATGATTGTCG
* * *
8244705 AGAAGCCTTGTTTATTTTTTTCAAAATCGTTGAGCTTTTATTTAGAGGAACCTTCTTTATTTTTC
1 AGAA-CCTTGTTTA-TTTTTTCAAAATCATTGAGCCTCTATTTAGAGGAACCTTCTTTATTTTTC
*
8244770 AAAGCTGTTAAGCCTCTAATTAGAGGAGCCTTAGTTATCTTTCAAAGTCATTGAGCCTCTGATTA
64 AAAGCTATTAAGCCTCTAATTAGAGGAG-CTTAGTTATCTTTCAAAGTCATTGAGCCTCTGATTA
8244835 GA
128 GA
* * * * * *
8244837 AGAACTTTGTTTATTTTTTCAAAGTCATTGAGCCTCTATTTAGAGGAGCTTTGTTTATTTTTTTT
1 AGAACCTTGTTTATTTTTTCAAAATCATTGAGCCTCTATTTAGAGGAACCTTCTTTA--TTTTTC
* * * * * * ** *
8244902 AAAGTTATTGAGCCTCTATTTAGATGAG-TTTGTTTATTTTTCCAAAGTTTTTGAGCCTCTGCTT
64 AAAGCTATTAAGCCTCTAATTAGAGGAGCTTAG-TTATCTTT-CAAAGTCATTGAGCCTCTGATT
8244966 AGA
127 AGA
* * *
8244969 AGAGCCTTATTTATTTTTTCAAAATCATTAAGCCTCTATTTAGAG
1 AGAACCTTGTTTATTTTTTCAAAATCATTGAGCCTCTATTTAGAG
8245014 AAGTTTTTAT
Statistics
Matches: 149, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
130 40 0.27
131 15 0.10
132 94 0.63
ACGTcount: A:0.26, C:0.14, G:0.16, T:0.44
Consensus pattern (129 bp):
AGAACCTTGTTTATTTTTTCAAAATCATTGAGCCTCTATTTAGAGGAACCTTCTTTATTTTTCAA
AGCTATTAAGCCTCTAATTAGAGGAGCTTAGTTATCTTTCAAAGTCATTGAGCCTCTGATTAGA
Found at i:8245711 original size:15 final size:16
Alignment explanation
Indices: 8245691--8245723 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8245681 AGAGAGAGAG
8245691 AGAGAG-AAAAAAAAA
1 AGAGAGTAAAAAAAAA
*
8245706 AGAGAGTGAAAAAAAA
1 AGAGAGTAAAAAAAAA
8245722 AG
1 AG
8245724 GTCTGATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (16 bp):
AGAGAGTAAAAAAAAA
Found at i:8245711 original size:17 final size:17
Alignment explanation
Indices: 8245689--8245722 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8245679 TGAGAGAGAG
8245689 AGAGAGAGAAAAAAAAA
1 AGAGAGAGAAAAAAAAA
*
8245706 AGAGAGTGAAAAAAAAA
1 AGAGAGAGAAAAAAAAA
8245723 GGTCTGATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.03
Consensus pattern (17 bp):
AGAGAGAGAAAAAAAAA
Found at i:8245711 original size:19 final size:18
Alignment explanation
Indices: 8245687--8245722 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8245677 CTTGAGAGAG
8245687 AGAGAGAGAGAAAAAAAAA
1 AGAGAGAGA-AAAAAAAAA
*
8245706 AGAGAGTGAAAAAAAAA
1 AGAGAGAGAAAAAAAAA
8245723 GGTCTGATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (18 bp):
AGAGAGAGAAAAAAAAAA
Found at i:8246484 original size:167 final size:167
Alignment explanation
Indices: 8246071--8246555 Score: 447
Period size: 167 Copynumber: 2.9 Consensus size: 167
8246061 TAAAATATTT
* * * * * *
8246071 TTTTAGAATAAATA-ATAATTATCCATTGAT-AGAATTTTTAAAAATTTTAAATGATAAATTTTC
1 TTTTAG-AGAAATAGATAATTATCCAATGATGAG-ATTCTTAGAAATTTCAAATGATAAATTTTT
* *
8246134 ATAAAAT-TCCTAGGTGAGAAATTTTGTCTAAATTTATCCCAAATGTTGAATAATTTAGATAAAA
64 A-AAAATCT-CTAGGTGAGAAATTTTCTCTAAATTTATCCCAAATG-TAAATAATTTAGATAAAA
* *
8246198 TTTCAATAACAATAATTAATATTTATTTTCAAACAAAAAAATAAAAA
126 TTTTAATAA-AATAATT--GATTTATTTTC--ACAAAAAAATAAAAA
** * * *
8246245 TTTTAGAGAAATAG-TAATTA-CTCACGGATGAAATTCTTAGAAATTTCAAATGATAAATTCCTA
1 TTTTAGAGAAATAGATAATTATC-CAATGATGAGATTCTTAGAAATTTCAAATGATAAATT-TTT
* *
8246308 AAAAATCTCTAGGTGA-AAATTTTCTCTAAATTTATCCTAAATGGTACAATAATTTAGATGAAAT
64 AAAAATCTCTAGGTGAGAAATTTTCTCTAAATTTATCCCAAAT-GTA-AATAATTTAGATAAAAT
* *
8246372 TTTAATAAAAGTAATTGA-TTCTTTTC-CAAATAAA-AAAAA
127 TTTAATAAAA-TAATTGATTTATTTTCACAAAAAAATAAAAA
*
8246411 -TTT-GA-AAATATTTGATAATTATCCAATGATGAGATTCTTAGAAATTTCAAATGGTAAATTTT
1 TTTTAGAGAAATA---GATAATTATCCAATGATGAGATTCTTAGAAATTTCAAATGATAAATTTT
* * * * *
8246473 TAAGAAATCTCTAGGTGAGAAA-TTTCTTTAAATTTGTCCCAAATAGTGAAAGAATTTAAATTAA
63 TAA-AAATCTCTAGGTGAGAAATTTTCTCTAAATTTATCCCAAAT-GT-AAATAATTTAGATAAA
*
8246537 ATTTTAAGAAAAATAATTG
125 ATTTTAA-TAAAATAATTG
8246556 TCATATTATT
Statistics
Matches: 263, Mismatches: 31, Indels: 41
0.79 0.09 0.12
Matches are distributed among these distances:
163 5 0.02
164 2 0.01
165 3 0.01
166 9 0.03
167 106 0.40
168 9 0.03
170 7 0.03
171 1 0.00
172 28 0.11
173 83 0.32
174 10 0.04
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (167 bp):
TTTTAGAGAAATAGATAATTATCCAATGATGAGATTCTTAGAAATTTCAAATGATAAATTTTTAA
AAATCTCTAGGTGAGAAATTTTCTCTAAATTTATCCCAAATGTAAATAATTTAGATAAAATTTTA
ATAAAATAATTGATTTATTTTCACAAAAAAATAAAAA
Found at i:8249856 original size:28 final size:28
Alignment explanation
Indices: 8249775--8249857 Score: 112
Period size: 28 Copynumber: 3.0 Consensus size: 28
8249765 TACTTCTCTA
*
8249775 ATGTTATCATTTTGTTAAACAGTTGTTG
1 ATGTTATCATTTTGTTAAACAGCTGTTG
* *
8249803 ATGTTATCATTTTGTTTAACAACTGTTG
1 ATGTTATCATTTTGTTAAACAGCTGTTG
* * *
8249831 ATGTTCTTATTTTGTTAAATAGCTGTT
1 ATGTTATCATTTTGTTAAACAGCTGTT
8249858 AATATTTTGT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (28 bp):
ATGTTATCATTTTGTTAAACAGCTGTTG
Found at i:8252552 original size:24 final size:24
Alignment explanation
Indices: 8252525--8252580 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
8252515 ATAATGCCAA
8252525 AAACAAATCATTCTCAAGATGATG
1 AAACAAATCATTCTCAAGATGATG
8252549 AAACAAATCATTCTCAAGATGATG
1 AAACAAATCATTCTCAAGATGATG
*
8252573 AAAAAAAT
1 AAACAAAT
8252581 TTATTATCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.52, C:0.14, G:0.11, T:0.23
Consensus pattern (24 bp):
AAACAAATCATTCTCAAGATGATG
Found at i:8255656 original size:4 final size:4
Alignment explanation
Indices: 8255647--8255697 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
8255637 TTATATTACC
* * *
8255647 TATT TATT TATT TA-T CATGT TAAAT TATT TATT TATT TATT TACT TATT
1 TATT TATT TATT TATT TAT-T T-ATT TATT TATT TATT TATT TATT TATT
8255696 TA
1 TA
8255698 ACATGTAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
3 2 0.05
4 32 0.84
5 3 0.08
6 1 0.03
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (4 bp):
TATT
Found at i:8255695 original size:37 final size:36
Alignment explanation
Indices: 8255647--8255717 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 36
8255637 TTATATTACC
* * *
8255647 TATTTATTTATTTATCATGTTAAATTATTTATTTATT
1 TATTTACTTATTTAACATG-TAAATAATTTATTTATT
8255684 TATTTACTTATTTAACATGTAAATAATTTATTTA
1 TATTTACTTATTTAACATGTAAATAATTTATTTA
8255718 ATATTTGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
36 14 0.45
37 17 0.55
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (36 bp):
TATTTACTTATTTAACATGTAAATAATTTATTTATT
Found at i:8256105 original size:22 final size:24
Alignment explanation
Indices: 8256070--8256118 Score: 68
Period size: 22 Copynumber: 2.1 Consensus size: 24
8256060 AGATTTTTTA
8256070 TTAAATAATATAAATT-AT-TATT
1 TTAAATAATATAAATTAATATATT
8256092 TTAAATTAAT-TAAATTAATATATT
1 TTAAA-TAATATAAATTAATATATT
8256116 TTA
1 TTA
8256119 TCGAAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 11 0.46
23 6 0.25
24 7 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAAATAATATAAATTAATATATT
Found at i:8259624 original size:28 final size:28
Alignment explanation
Indices: 8259572--8259629 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
8259562 TTCACAAAAA
*
8259572 TTTTAAAAAATCTAAAACATATAAACTT
1 TTTTAAAAAATCTAAAACATATAAAATT
* *
8259600 TTTTAAAAAAT-TAGAAATATTTAAAATT
1 TTTTAAAAAATCTA-AAACATATAAAATT
8259628 TT
1 TT
8259630 AAAATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 2 0.08
28 24 0.92
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (28 bp):
TTTTAAAAAATCTAAAACATATAAAATT
Found at i:8259646 original size:59 final size:58
Alignment explanation
Indices: 8259575--8259688 Score: 140
Period size: 58 Copynumber: 1.9 Consensus size: 58
8259565 ACAAAAATTT
* ** *
8259575 TAAAAAATCTAAAACATATAAACTTTTTTAAAAAATTA-GAAATATTTAAAATTTTAAAA
1 TAAAAAAACTAAAACATATAAA-AATTTTAAAAAATTATGAAA-ACTTAAAATTTTAAAA
* * *
8259634 TAAAAAAACTAAAATATTTAAAAATTTTAAAAAATTATGAAAACTTAAGATTTTA
1 TAAAAAAACTAAAACATATAAAAATTTTAAAAAATTATGAAAACTTAAAATTTTA
8259689 GAAAATCTCA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
58 24 0.51
59 23 0.49
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (58 bp):
TAAAAAAACTAAAACATATAAAAATTTTAAAAAATTATGAAAACTTAAAATTTTAAAA
Found at i:8259649 original size:31 final size:33
Alignment explanation
Indices: 8259604--8259665 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
8259594 AAACTTTTTT
*
8259604 AAAAAATTAGAAATATTT-AAAATTTTAAAATA
1 AAAAAACTAGAAATATTTAAAAATTTTAAAATA
8259636 AAAAAACTA-AAATATTTAAAAATTTTAAAA
1 AAAAAACTAGAAATATTTAAAAATTTTAAAA
8259666 AATTATGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 8 0.29
32 20 0.71
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (33 bp):
AAAAAACTAGAAATATTTAAAAATTTTAAAATA
Found at i:8259820 original size:17 final size:17
Alignment explanation
Indices: 8259790--8259857 Score: 73
Period size: 17 Copynumber: 4.0 Consensus size: 17
8259780 AAAAATTTCA
* *
8259790 TAAAAACTTAAAAAATT
1 TAAAAATTTTAAAAATT
* *
8259807 TGAAAATTTTAAAAATA
1 TAAAAATTTTAAAAATT
** *
8259824 TAAAAATTTTCTAAATC
1 TAAAAATTTTAAAAATT
8259841 TAAAAATTTTAAAAATT
1 TAAAAATTTTAAAAATT
8259858 ATTAAAAAAT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.37
Consensus pattern (17 bp):
TAAAAATTTTAAAAATT
Found at i:8259868 original size:11 final size:9
Alignment explanation
Indices: 8259797--8259865 Score: 61
Period size: 9 Copynumber: 7.8 Consensus size: 9
8259787 TCATAAAAAC
*
8259797 TTAAAAAAT
1 TTAAAAATT
*
8259806 TTGAAAATT
1 TTAAAAATT
8259815 TTAAAAA-T
1 TTAAAAATT
*
8259823 ATAAAAATT
1 TTAAAAATT
**
8259832 TTCTAAA-T
1 TTAAAAATT
*
8259840 CTAAAAATT
1 TTAAAAATT
8259849 TTAAAAATT
1 TTAAAAATT
8259858 ATTAAAAA
1 -TTAAAAA
8259866 ATTTCACTTT
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
8 12 0.26
9 27 0.59
10 7 0.15
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (9 bp):
TTAAAAATT
Found at i:8260128 original size:35 final size:35
Alignment explanation
Indices: 8260089--8260157 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
8260079 TATTCAAATT
*
8260089 AAAAAAATTTAGATTTTTTAATTTTCAAAATTTTC
1 AAAAAAATTTAGAATTTTTAATTTTCAAAATTTTC
* * *
8260124 AAAAAATTTTAGAATTTTTCATTTTCAAATTTTT
1 AAAAAAATTTAGAATTTTTAATTTTCAAAATTTT
8260158 AAAGATTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.51
Consensus pattern (35 bp):
AAAAAAATTTAGAATTTTTAATTTTCAAAATTTTC
Found at i:8260225 original size:17 final size:18
Alignment explanation
Indices: 8260205--8260238 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8260195 TTTTCATTAA
8260205 AATTTTTAAT-TTTTTTG
1 AATTTTTAATCTTTTTTG
*
8260222 AATTTTTCATCTTTTTT
1 AATTTTTAATCTTTTTT
8260239 TTATCTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.71
Consensus pattern (18 bp):
AATTTTTAATCTTTTTTG
Found at i:8261646 original size:30 final size:31
Alignment explanation
Indices: 8261607--8261667 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
8261597 AATAATTATT
* *
8261607 TTATAATTAAATTTATT-TAAATATTTTAAAA
1 TTATAATTAAA-ATATTATAAAAATTTTAAAA
8261638 TTAT-ATTAAAATATTATAAAAATTTTAAAA
1 TTATAATTAAAATATTATAAAAATTTTAAAA
8261668 AATTAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 4 0.15
30 19 0.70
31 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (31 bp):
TTATAATTAAAATATTATAAAAATTTTAAAA
Found at i:8261649 original size:21 final size:20
Alignment explanation
Indices: 8261615--8261679 Score: 69
Period size: 21 Copynumber: 3.2 Consensus size: 20
8261605 TTTTATAATT
* *
8261615 AAATTTATTTAAATATTTTA
1 AAATTTATTAAAATATTATA
8261635 AAATTATATTAAAATATTATA
1 AAATT-TATTAAAATATTATA
* * *
8261656 AAAATT-TTAAAAAATTAAA
1 AAATTTATTAAAATATTATA
8261675 AAATT
1 AAATT
8261680 AAGCTGAATC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
19 15 0.39
20 6 0.16
21 17 0.45
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
AAATTTATTAAAATATTATA
Found at i:8263370 original size:14 final size:14
Alignment explanation
Indices: 8263333--8263374 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
8263323 TAGTTTTTAA
*
8263333 AAAATTAAATTA-T
1 AAAATTAATTTATT
*
8263346 AATATTAAATTTATT
1 AAAATT-AATTTATT
8263361 AAAATTAATTTATT
1 AAAATTAATTTATT
8263375 TTAAAATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 5 0.21
14 13 0.54
15 6 0.25
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAAATTAATTTATT
Found at i:8263977 original size:24 final size:24
Alignment explanation
Indices: 8263945--8264016 Score: 76
Period size: 24 Copynumber: 2.9 Consensus size: 24
8263935 TTAAAATTTT
8263945 ATAATTTTTAATATAAAAAAATAAA
1 ATAA-TTTTAATATAAAAAAATAAA
* *
8263970 ATAATTTTAAAATATAAAAAT-AA
1 ATAATTTTAATATAAAAAAATAAA
8263993 A-AATTTTAGATATTTAAAAAAATA
1 ATAATTTTA-ATA--TAAAAAAATA
8264017 TGATATAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
22 7 0.18
23 5 0.13
24 15 0.38
25 12 0.31
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.36
Consensus pattern (24 bp):
ATAATTTTAATATAAAAAAATAAA
Found at i:8263995 original size:25 final size:25
Alignment explanation
Indices: 8263945--8264016 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
8263935 TTAAAATTTT
*
8263945 ATAATTTTTAATATAAAAAAATAAA
1 ATAATTTTAAATATAAAAAAATAAA
*
8263970 ATAATTTTAAA-ATATAAAAAT-AA
1 ATAATTTTAAATATAAAAAAATAAA
*
8263993 A-AATTTTAGATATTTAAAAAAATA
1 ATAATTTTA-A-ATATAAAAAAATA
8264017 TGATATAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
22 7 0.18
23 4 0.10
24 10 0.26
25 18 0.46
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.36
Consensus pattern (25 bp):
ATAATTTTAAATATAAAAAAATAAA
Found at i:8264230 original size:162 final size:161
Alignment explanation
Indices: 8264031--8264355 Score: 641
Period size: 162 Copynumber: 2.0 Consensus size: 161
8264021 ATAATTTTAC
8264031 GATATCTAAAAAAACAAAAAAAGGACAGAGTAATAATAATCCATTATTAATTAATTTATTAATCC
1 GATATCTAAAAAAACAAAAAAAGGACAGAGTAATAATAATCCATTATTAATTAATTTATTAATCC
8264096 TTAAAAAATTTTAAATTCATCCCCCTAACCCTATCTCCTCTATGGGTCCTACCTCCTCATCTCTG
66 TTAAAAAATTTTAAATTCATCCCCCTAACCCTATCTCCTCTATGGGTCCTACCTCCTCATCTCTG
8264161 GCCACGTACCCAACTTCTACAACTTATCCTT
131 GCCACGTACCCAACTTCTACAACTTATCCTT
8264192 GATATCTAAAAAAACAAAAAAAAGGACAGAGTAATAATAATCCATTATTAATTAATTTATTAATC
1 GATATCTAAAAAAAC-AAAAAAAGGACAGAGTAATAATAATCCATTATTAATTAATTTATTAATC
8264257 CTTAAAAAATTTTAAATTCATCCCCCTAACCCTATCTCCTCTATGGGTCCTACCTCCTCATCTCT
65 CTTAAAAAATTTTAAATTCATCCCCCTAACCCTATCTCCTCTATGGGTCCTACCTCCTCATCTCT
8264322 GGCCACGTACCCAACTTCTACAACTTATCCTT
130 GGCCACGTACCCAACTTCTACAACTTATCCTT
8264354 GA
1 GA
8264356 GCCGAATTTT
Statistics
Matches: 163, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
161 15 0.09
162 148 0.91
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (161 bp):
GATATCTAAAAAAACAAAAAAAGGACAGAGTAATAATAATCCATTATTAATTAATTTATTAATCC
TTAAAAAATTTTAAATTCATCCCCCTAACCCTATCTCCTCTATGGGTCCTACCTCCTCATCTCTG
GCCACGTACCCAACTTCTACAACTTATCCTT
Found at i:8265296 original size:19 final size:19
Alignment explanation
Indices: 8265274--8265310 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8265264 ATTAGGAATG
*
8265274 ATTTTAATTATTTAATTAT
1 ATTTTAATTAATTAATTAT
8265293 ATTTTAATTAATTAATTA
1 ATTTTAATTAATTAATTA
8265311 ATTATTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTTTAATTAATTAATTAT
Found at i:8265323 original size:23 final size:23
Alignment explanation
Indices: 8265277--8265323 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
8265267 AGGAATGATT
* *
8265277 TTAATTATTTAATTATATTTTAA
1 TTAATTAATTAATTATATTATAA
8265300 TTAATTAATTAATTAT-TTAATAA
1 TTAATTAATTAATTATATT-ATAA
8265323 T
1 T
8265324 ATGTTATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TTAATTAATTAATTATATTATAA
Found at i:8266653 original size:23 final size:22
Alignment explanation
Indices: 8266617--8266659 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8266607 AGTATAATTT
*
8266617 TAAAAAATTAAATTATTTTATA
1 TAAAAAATAAAATTATTTTATA
*
8266639 TAAAAAATAATAATTTTTTTA
1 TAAAAAATAA-AATTATTTTA
8266660 ATCATAATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TAAAAAATAAAATTATTTTATA
Found at i:8268733 original size:22 final size:23
Alignment explanation
Indices: 8268705--8268747 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
8268695 AAATTTTATT
8268705 TTAATTTTTAAAT-TTTAAAAAA
1 TTAATTTTTAAATATTTAAAAAA
*
8268727 TTAATTTTTAATTATTTAAAA
1 TTAATTTTTAAATATTTAAAA
8268748 TTATCTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TTAATTTTTAAATATTTAAAAAA
Found at i:8275757 original size:14 final size:14
Alignment explanation
Indices: 8275717--8275759 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
8275707 ATGATTTTGG
8275717 AATAAG-TTTAAAA
1 AATAAGTTTTAAAA
*
8275730 ATATAATATTTTAAAA
1 A-ATAA-GTTTTAAAA
8275746 AATAAGTTTTAAAA
1 AATAAGTTTTAAAA
8275760 CTATTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 1 0.04
14 12 0.48
15 4 0.16
16 8 0.32
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (14 bp):
AATAAGTTTTAAAA
Found at i:8277914 original size:2 final size:2
Alignment explanation
Indices: 8277907--8277935 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8277897 CTTATGTTAT
8277907 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8277936 GAAAATCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8279401 original size:17 final size:17
Alignment explanation
Indices: 8279376--8279410 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8279366 CATAATTTTA
*
8279376 TATATTTTTAATACAAT
1 TATACTTTTAATACAAT
*
8279393 TATACTTTTAGTACAAT
1 TATACTTTTAATACAAT
8279410 T
1 T
8279411 GAAAAAACTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (17 bp):
TATACTTTTAATACAAT
Found at i:8281699 original size:17 final size:20
Alignment explanation
Indices: 8281660--8281708 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 20
8281650 TGTAAGAATG
*
8281660 TCATGCAAATATATTAATTA
1 TCATGCAAATATATTAATAA
8281680 TCATGC-AATA-A-TAATAA
1 TCATGCAAATATATTAATAA
*
8281697 TCATGTAAATAT
1 TCATGCAAATAT
8281709 GCAAATCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 10 0.40
18 5 0.20
19 4 0.16
20 6 0.24
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (20 bp):
TCATGCAAATATATTAATAA
Found at i:8282037 original size:41 final size:41
Alignment explanation
Indices: 8281931--8282136 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 41
8281921 CAAATAGAAT
* * *
8281931 TGCAATTACATATATAATCATGCAATTAACAATGTAAAACA
1 TGCAAATAAATATATAATCATGCAATTAACAATATAAAACA
* * *
8281972 TGCATAT-AATATATAATCATGCAATTAACAATATAGATCA
1 TGCAAATAAATATATAATCATGCAATTAACAATATAAAACA
* *
8282012 TGCAAATAAATATA-AATTCAGGCAATT-A-AATATAAATCA
1 TGCAAATAAATATATAA-TCATGCAATTAACAATATAAAACA
8282051 TGC-AATAAAATATATAATCATGCAATTAACAATATAAAACA
1 TGCAAAT-AAATATATAATCATGCAATTAACAATATAAAACA
* * *
8282092 TGCAAATAAATATATTATCATGC-ATTTA-AATATATAATCA
1 TGCAAATAAATATATAATCATGCAATTAACAATATA-AAACA
8282132 TGCAA
1 TGCAA
8282137 TTAATAATAC
Statistics
Matches: 143, Mismatches: 14, Indels: 17
0.82 0.08 0.10
Matches are distributed among these distances:
38 3 0.02
39 35 0.24
40 54 0.38
41 48 0.34
42 3 0.02
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.31
Consensus pattern (41 bp):
TGCAAATAAATATATAATCATGCAATTAACAATATAAAACA
Found at i:8282044 original size:61 final size:62
Alignment explanation
Indices: 8281931--8282230 Score: 261
Period size: 61 Copynumber: 5.0 Consensus size: 62
8281921 CAAATAGAAT
* * * *
8281931 TGCAATT-ACATATATAATCATGCAATTAACAATGTAAA-ACATGC-A-TATAATATATAATCA
1 TGCAATTAAAATATA-AATCATGCAAATAACAATATAAATTCATGCAATTA-AATATATAATCA
* *
8281991 TGCAATTAACAATATAGATCATGCAAAT-A-AATATAAATTCAGGCAATTAAATATA-AATCA
1 TGCAATTAA-AATATAAATCATGCAAATAACAATATAAATTCATGCAATTAAATATATAATCA
* * * *
8282051 TGCAA-TAAAATATATAATCATGCAATTAACAATATAAA-ACATGCAAATAAATATATTATCA
1 TGCAATTAAAATATA-AATCATGCAAATAACAATATAAATTCATGCAATTAAATATATAATCA
* * * * * *
8282112 TGC-ATTTAAATATATAATCATGCAATTAATAATACAAATT-ATGCAATAAAATATATTATCA
1 TGCAATTAAAATATA-AATCATGCAAATAACAATATAAATTCATGCAATTAAATATATAATCA
* *
8282173 TGCAATTAACAATATAAAACATGCAAAT-A-AATAT-ATTATCATGCAATTAACA-ATATAA
1 TGCAATTAA-AATATAAATCATGCAAATAACAATATAAAT-TCATGCAATTAA-ATATATAA
8282231 ATATATTATA
Statistics
Matches: 199, Mismatches: 25, Indels: 31
0.78 0.10 0.12
Matches are distributed among these distances:
58 6 0.03
59 22 0.11
60 43 0.22
61 100 0.50
62 22 0.11
63 6 0.03
ACGTcount: A:0.51, C:0.12, G:0.06, T:0.31
Consensus pattern (62 bp):
TGCAATTAAAATATAAATCATGCAAATAACAATATAAATTCATGCAATTAAATATATAATCA
Found at i:8282156 original size:41 final size:40
Alignment explanation
Indices: 8281931--8282232 Score: 255
Period size: 41 Copynumber: 7.5 Consensus size: 40
8281921 CAAATAGAAT
* * *
8281931 TGCAATT-ACATATATAATCATGCAATTAACA-ATGTAAAACA
1 TGCAATTAAAATATA-AATCATGCAATTAA-ATATAT-AATCA
*
8281972 TGC-A-TATAATATATAATCATGCAATTAACA-ATATAGATCA
1 TGCAATTAAAATATA-AATCATGCAATTAA-ATATATA-ATCA
* *
8282012 TGCAAAT-AAATATAAATTCAGGCAATTAAATATA-AATCA
1 TGCAATTAAAATATAAA-TCATGCAATTAAATATATAATCA
*
8282051 TGCAA-TAAAATATATAATCATGCAATTAACA-ATATAAAACA
1 TGCAATTAAAATATA-AATCATGCAATTAA-ATATAT-AATCA
* * *
8282092 TGCAAAT-AAATATATTATCATGCATTTAAATATATAATCA
1 TGCAATTAAAATATA-AATCATGCAATTAAATATATAATCA
* * * *
8282132 TGCAATTAATAATACAAATTATGCAATAAAATATATTATCA
1 TGCAATTAA-AATATAAATCATGCAATTAAATATATAATCA
* * *
8282173 TGCAATTAACAATATAAAACATGCAAATAAATATATTATCA
1 TGCAATTAA-AATATAAATCATGCAATTAAATATATAATCA
8282214 TGCAATTAACAATATAAAT
1 TGCAATTAA-AATATAAAT
8282233 ATATTATAAT
Statistics
Matches: 221, Mismatches: 25, Indels: 30
0.80 0.09 0.11
Matches are distributed among these distances:
38 1 0.00
39 32 0.14
40 50 0.23
41 131 0.59
42 7 0.03
ACGTcount: A:0.51, C:0.12, G:0.06, T:0.31
Consensus pattern (40 bp):
TGCAATTAAAATATAAATCATGCAATTAAATATATAATCA
Found at i:8282175 original size:102 final size:101
Alignment explanation
Indices: 8282008--8282230 Score: 344
Period size: 102 Copynumber: 2.2 Consensus size: 101
8281998 AACAATATAG
* *
8282008 ATCATGCAAATAAATATA-AATTCAGGCAATTAAATATAAATCATGCAATAAAATATATAATCAT
1 ATCATGCAATTAAATATATAATTCAGGCAATTAAATACAAATCATGCAATAAAATATATAATCAT
8282072 GCAATTAACAATATAAAACATGCAAATAAATATATT
66 GCAATTAACAATATAAAACATGCAAATAAATATATT
* * * *
8282108 ATCATGCATTTAAATATATAA-TCATGCAATTAATAATACAAATTATGCAATAAAATATATTATC
1 ATCATGCAATTAAATATATAATTCAGGCAATT-A-AATACAAATCATGCAATAAAATATATAATC
8282172 ATGCAATTAACAATATAAAACATGCAAATAAATATATT
64 ATGCAATTAACAATATAAAACATGCAAATAAATATATT
8282210 ATCATGCAATTAACA-ATATAA
1 ATCATGCAATTAA-ATATATAA
8282231 ATATATTATA
Statistics
Matches: 112, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
100 25 0.22
101 3 0.03
102 83 0.74
103 1 0.01
ACGTcount: A:0.52, C:0.11, G:0.05, T:0.31
Consensus pattern (101 bp):
ATCATGCAATTAAATATATAATTCAGGCAATTAAATACAAATCATGCAATAAAATATATAATCAT
GCAATTAACAATATAAAACATGCAAATAAATATATT
Found at i:8282248 original size:34 final size:32
Alignment explanation
Indices: 8282197--8282284 Score: 90
Period size: 34 Copynumber: 2.7 Consensus size: 32
8282187 TAAAACATGC
* *
8282197 AAATAAA-TATATTATCATGCAATTA-ACAATAT
1 AAATAAATTA-ATAATCATGCAATCATACAA-AT
*
8282229 AAATATATTATAATAATCATGCAATCATACAAAT
1 AAATA-AAT-TAATAATCATGCAATCATACAAAT
*
8282263 AAATAAATTGATAATCATGCAA
1 AAATAAATTAATAATCATGCAA
8282285 ATAAATTAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
32 18 0.38
33 3 0.06
34 20 0.43
35 6 0.13
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.32
Consensus pattern (32 bp):
AAATAAATTAATAATCATGCAATCATACAAAT
Found at i:8282288 original size:20 final size:20
Alignment explanation
Indices: 8282263--8282356 Score: 98
Period size: 21 Copynumber: 4.6 Consensus size: 20
8282253 TCATACAAAT
*
8282263 AAATAAATTGATAATCATGC
1 AAATAAATTAATAATCATGC
* *
8282283 AAATAAATTAATAATCGTGT
1 AAATAAATTAATAATCATGC
*
8282303 AAATGAAATTAATAGTCATGC
1 AAAT-AAATTAATAATCATGC
* **
8282324 AAATATATTAATAAATCACAC
1 AAATAAATTAAT-AATCATGC
*
8282345 AAATATATTAAT
1 AAATAAATTAAT
8282357 CATGTAAATA
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
20 28 0.45
21 34 0.55
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATAAATTAATAATCATGC
Found at i:8282313 original size:21 final size:20
Alignment explanation
Indices: 8282262--8282337 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
8282252 ATCATACAAA
*
8282262 TAAATAAATTGATAATCATG
1 TAAATAAATTAATAATCATG
* *
8282282 CAAATAAATTAATAATCGTG
1 TAAATAAATTAATAATCATG
*
8282302 TAAATGAAATTAATAGTCATG
1 TAAAT-AAATTAATAATCATG
* *
8282323 CAAATATATTAATAA
1 TAAATAAATTAATAA
8282338 ATCACACAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
20 29 0.63
21 17 0.37
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (20 bp):
TAAATAAATTAATAATCATG
Found at i:8282392 original size:32 final size:33
Alignment explanation
Indices: 8282344--8282405 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
8282334 ATAAATCACA
* *
8282344 CAAATATATTAATCATGTAAATAAAATATTTAG
1 CAAATAAATTAATCATGCAAATAAAATATTTAG
*
8282377 CAAATAAATT-ATCATGCAAATATAATATT
1 CAAATAAATTAATCATGCAAATAAAATATT
8282406 AGTCATGCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 17 0.65
33 9 0.35
ACGTcount: A:0.52, C:0.08, G:0.05, T:0.35
Consensus pattern (33 bp):
CAAATAAATTAATCATGCAAATAAAATATTTAG
Found at i:8282395 original size:16 final size:16
Alignment explanation
Indices: 8282344--8282417 Score: 51
Period size: 16 Copynumber: 4.3 Consensus size: 16
8282334 ATAAATCACA
*
8282344 CAAATATATTAATCATG
1 CAAATAAATT-ATCATG
* * *
8282361 TAAATAAAATAT-TTAG
1 CAAATAAATTATCAT-G
8282377 CAAATAAATTATCATG
1 CAAATAAATTATCATG
8282393 CAAATATAATATTAGTCATG
1 C-AA-ATAA-ATTA-TCATG
8282413 CAAAT
1 CAAAT
8282418 TCATGCAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
15 1 0.02
16 15 0.34
17 10 0.23
18 6 0.14
19 6 0.14
20 6 0.14
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.34
Consensus pattern (16 bp):
CAAATAAATTATCATG
Found at i:8282413 original size:20 final size:18
Alignment explanation
Indices: 8282380--8282417 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
8282370 TATTTAGCAA
8282380 ATAAATTATCATGCAAAT
1 ATAAATTATCATGCAAAT
8282398 ATAATATTAGTCATGCAAAT
1 ATAA-ATTA-TCATGCAAAT
8282418 TCATGCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (18 bp):
ATAAATTATCATGCAAAT
Found at i:8286702 original size:3 final size:3
Alignment explanation
Indices: 8286696--8286724 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8286686 TTTCTTTAAA
8286696 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8286725 GCATAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8289058 original size:73 final size:73
Alignment explanation
Indices: 8288971--8289184 Score: 233
Period size: 73 Copynumber: 3.0 Consensus size: 73
8288961 TACTGTAAGT
*
8288971 CAAAAAAT-AAGAATGACCAAGATGACATCATAAGTTAGAAAATAAGAAAACAATTAGGACAACA
1 CAAAAAATAAAGAATGACTAAGATGACATCATAAGTTAGAAAATAAGAAAACAATTAGGACAACA
8289035 TCGCAAGC
66 TCGCAAGC
* * * * *
8289043 CAAAAAATAAAGAATGACTAGGATGACATCATAAGTTA-AAAAGTAAAAAAACAACTGGGACAAT
1 CAAAAAATAAAGAATGACTAAGATGACATCATAAGTTAGAAAA-TAAGAAAACAATTAGGACAAC
* *
8289107 A-CTGTAAGT
65 ATC-GCAAGC
* * * * * * *
8289116 C-AAAAATAAAAAACGATTGAGATGACACCATAAGTT-GAAAAAAAG-AAACGATTAGGACAACA
1 CAAAAAATAAAGAATGACTAAGATGACATCATAAGTTAGAAAATAAGAAAACAATTAGGACAACA
8289178 TCGCAAG
66 TCGCAAG
8289185 TAAGAAAATA
Statistics
Matches: 116, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
70 17 0.15
71 3 0.03
72 46 0.40
73 50 0.43
ACGTcount: A:0.54, C:0.14, G:0.16, T:0.16
Consensus pattern (73 bp):
CAAAAAATAAAGAATGACTAAGATGACATCATAAGTTAGAAAATAAGAAAACAATTAGGACAACA
TCGCAAGC
Found at i:8289245 original size:73 final size:73
Alignment explanation
Indices: 8289147--8289488 Score: 290
Period size: 73 Copynumber: 4.7 Consensus size: 73
8289137 ATGACACCAT
* * *
8289147 AAGTT-GAAAA-AAAGAAACGATTAGGACAACATCGCAAG-TAAGAAAATAAGAAAACGATCGGG
1 AAGTTAGAAAATAAA-AAATGACTAGGACAACATCACAAGTTAA-AAAATAAGAAAACGATCGGG
*
8289209 ACAACATTGT
64 ACAACATTGC
* * * * ** * * *
8289219 AAGTCAGAAAATAAAGAACGACTAGGATGATAC-T-GTAAGTTAAAAAATAAAAAAATGAT-GAA
1 AAGTTAGAAAATAAAAAATGACTAGGA-CA-ACATCACAAGTTAAAAAATAAGAAAACGATCG-G
*
8289281 GACAACACTGC
63 GACAACATTGC
* * * *
8289292 AAGTTAGAAAATAAAAAAATGAC-AGGGATAACACCATAAGTTAAAAAATAAAGAATA--ATCGG
1 AAGTTAGAAAAT-AAAAAATGACTA-GGACAACATCACAAGTTAAAAAAT-AAGAAAACGATCGG
* *
8289354 GACAATATCGC
63 GACAACATTGC
* * *
8289365 AAGTTAGAAAATAAAAAATGATTAGGACAACAACACAAGTAAAAAAATAAGAAAACGA-CTGGGA
1 AAGTTAGAAAATAAAAAATGACTAGGACAACATCACAAGTTAAAAAATAAGAAAACGATC-GGGA
8289429 CAACATTGC
65 CAACATTGC
* * *
8289438 AAGTTAGAAAATAAGAAAATGACTAAGACAACATCATAAGTCAAAAAATAA
1 AAGTTAGAAAATAA-AAAATGACTAGGACAACATCACAAGTTAAAAAATAA
8289489 AGAATGACTG
Statistics
Matches: 218, Mismatches: 35, Indels: 32
0.76 0.12 0.11
Matches are distributed among these distances:
71 6 0.03
72 37 0.17
73 104 0.48
74 64 0.29
75 7 0.03
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (73 bp):
AAGTTAGAAAATAAAAAATGACTAGGACAACATCACAAGTTAAAAAATAAGAAAACGATCGGGAC
AACATTGC
Found at i:8289468 original size:37 final size:37
Alignment explanation
Indices: 8289002--8289472 Score: 192
Period size: 37 Copynumber: 12.9 Consensus size: 37
8288992 ATGACATCAT
** *
8289002 AAGTTAGAAAATAAGAAAACAATTAGGACAACATCGC
1 AAGTTAGAAAATAAGAAAATGACTAGGACAACATCGC
** * * ** **
8289039 AAGCCAAAAAATAA-AGAATGACTAGGATGACATCAT
1 AAGTTAGAAAATAAGAAAATGACTAGGACAACATCGC
* ** * * *
8289075 AAGTTA-AAAAGTAAAAAAACAACTGGGACAATA-CTGT
1 AAGTTAGAAAA-TAAGAAAATGACTAGGACAACATC-GC
* * * *
8289112 AAGTCA-AAAATAA-AAAACGATTGAGATGACACCAT---
1 AAGTTAGAAAATAAGAAAATGACT-AG--GACAACATCGC
* * *
8289147 AAGTT-GAAAAAAAG-AAACGATTAGGACAACATCGC
1 AAGTTAGAAAATAAGAAAATGACTAGGACAACATCGC
* * * * *
8289182 AAGTAAGAAAATAAGAAAACGA-TCGGGACAACATTGT
1 AAGTTAGAAAATAAGAAAATGACT-AGGACAACATCGC
* * * * *
8289219 AAGTCAGAAAATAA-AGAACGACTAGGATGATAC-T-GT
1 AAGTTAGAAAATAAGAAAATGACTAGGA-CA-ACATCGC
* * *
8289255 AAGTTAAAAAATAAAAAAATGA-TGAAGACAACA-CTGC
1 AAGTTAGAAAATAAGAAAATGACT-AGGACAACATC-GC
* * * **
8289292 AAGTTAGAAAATAAAAAAATGAC-AGGGATAACACCAT
1 AAGTTAGAAAATAAGAAAATGACTA-GGACAACATCGC
* * *
8289329 AAGTTAAAAAATAAAGAATAAT--C-GGGACAATATCGC
1 AAGTTAGAAAAT-AAGAA-AATGACTAGGACAACATCGC
* * *
8289365 AAGTTAGAAAATAA-AAAATGATTAGGACAACAACAC
1 AAGTTAGAAAATAAGAAAATGACTAGGACAACATCGC
* * * * *
8289401 AAGTAAAAAAATAAGAAAACGACTGGGACAACATTGC
1 AAGTTAGAAAATAAGAAAATGACTAGGACAACATCGC
*
8289438 AAGTTAGAAAATAAGAAAATGACTAAGACAACATC
1 AAGTTAGAAAATAAGAAAATGACTAGGACAACATC
8289473 ATAAGTCAAA
Statistics
Matches: 323, Mismatches: 79, Indels: 64
0.69 0.17 0.14
Matches are distributed among these distances:
32 7 0.02
33 3 0.01
34 4 0.01
35 37 0.11
36 100 0.31
37 157 0.49
38 12 0.04
39 3 0.01
ACGTcount: A:0.54, C:0.12, G:0.17, T:0.17
Consensus pattern (37 bp):
AAGTTAGAAAATAAGAAAATGACTAGGACAACATCGC
Found at i:8289486 original size:37 final size:35
Alignment explanation
Indices: 8288966--8290068 Score: 206
Period size: 36 Copynumber: 30.5 Consensus size: 35
8288956 GATGATACTG
* * * **
8288966 TAAGTCAAAAAAT-AAGAATGACCAAGATGACATCA
1 TAAGTCAAAAAATAAAAAATGACTAGGACAACA-CA
* * ** * *
8289001 TAAGTTAGAAAATAAGAAAACAATTAGGACAACATCG
1 TAAGTCAAAAAATAA-AAAATGACTAGGACAACA-CA
* * * **
8289038 CAAGCCAAAAAATAAAGAATGACTAGGATGACATCA
1 TAAGTCAAAAAATAAAAAATGACTAGGACAACA-CA
* * ** * * *
8289074 TAAGTTAAAAAGTAAAAAAACAACTGGGACAATACTG
1 TAAGTCAAAAAAT-AAAAAATGACTAGGACAACAC-A
* *
8289111 TAAGTC-AAAAATAAAAAACGATTGAGATGAC-AC-CA
1 TAAGTCAAAAAATAAAAAATGACT-AG--GACAACACA
** * * * *
8289146 TAAGTTGAAAAA-AAGAAACGATTAGGACAACATCG
1 TAAGTCAAAAAATAAAAAATGACTAGGACAACA-CA
* * * **
8289181 CAAGT-AAGAAAATAAGAAAACGA-TCGGGACAACATTG
1 TAAGTCAA-AAAATAA-AAAATGACT-AGGACAACA-CA
* * * ** * *
8289218 TAAGTCAGAAAATAAAGAACGACTAGGATGATACTG
1 TAAGTCAAAAAATAAAAAATGACTAGGACAACAC-A
* *
8289254 TAAGTTAAAAAATAAAAAAATGA-TGAAGACAACAC-
1 TAAGTCAAAAAAT-AAAAAATGACT-AGGACAACACA
* * *
8289289 TGCAAGTTAGAAAATAAAAAAATGAC-AGGGATAACACCA
1 T--AAGTCAAAAAAT-AAAAAATGACTA-GGACAACA-CA
* * * * * *
8289328 TAAGTTAAAAAATAAAGAAT-AATCGGGACAATATCG
1 TAAGTCAAAAAATAAAAAATGACT-AGGACAACA-CA
* * * *
8289364 CAAGTTAGAAAATAAAAAATGATTAGGACAACAACA
1 TAAGTCAAAAAATAAAAAATGACTAGGACAAC-ACA
* * * * *
8289400 CAAGTAAAAAAATAAGAAAACGACTGGGACAACA-T
1 TAAGTCAAAAAATAA-AAAATGACTAGGACAACACA
* * *
8289435 TGCAAGTTAGAAAATAAGAAAATGACTAAGACAACATCA
1 T--AAGTCAAAAAATAA-AAAATGACTAGGACAACA-CA
* ** *
8289474 TAAGTCAAAAAATAAAGAATGACT-GAGATGACACTG
1 TAAGTCAAAAAATAAAAAATGACTAG-GACAACAC-A
** * *
8289510 TAAGTCAAAAAGCAAAGAATGACT-GATACAACAC-
1 TAAGTCAAAAAATAAAAAATGACTAG-GACAACACA
** *
8289544 TGCAAGTCAAAAAATAAAAAAAAAACAAATGGGACAACACCA
1 T--AAGTCAAAAAAT-AAAAAATGAC---TAGGACAACA-CA
* * *
8289586 AAAGTTAAAAAATAAAAAAATGACTAGGACGACA-A
1 TAAGTCAAAAAAT-AAAAAATGACTAGGACAACACA
* *
8289621 TGCAAGTTAAAAAATAAGAAAATGAC-CGAGACAACACTA
1 T--AAGTCAAAAAATAA-AAAATGACTAG-GACAACAC-A
* * * **
8289660 TAAGTCAGAAAATAAAGAATGATTAGGATGACACCA
1 TAAGTCAAAAAATAAAAAATGACTAGGACAACA-CA
* * **
8289696 TAAGTTAAAAAA-ATAAAAATGACCCA-GACAATGCTA
1 TAAGTCAAAAAATA-AAAAATGA-CTAGGACAACAC-A
* * ** * *
8289732 CAAGTCAAAAAATAAAGAACAACTAGGACGACACTG
1 TAAGTCAAAAAATAAAAAATGACTAGGACAACAC-A
** * * * * *
8289768 TAAGTTGAAAAATAAGACAATGACTGGGATAATATCG
1 TAAGTCAAAAAATAA-AAAATGACTAGGACAACA-CA
* * * * *
8289805 TAAGTCAAAAAATAAGAAACGACCAAGATAACACTA
1 TAAGTCAAAAAATAAAAAATGACTAGGACAACAC-A
* * *
8289841 TAAGTC-AGAAA-AAAAAA--ACTACGATAACACCA
1 TAAGTCAAAAAATAAAAAATGACTAGGACAACA-CA
* * * *
8289873 TAAATCAAAAAATAAAGAACGA-TCAGGACAACA-T
1 TAAGTCAAAAAATAAAAAATGACT-AGGACAACACA
* * * *
8289907 TGCAAGTTAAAAAATAAGAAAATGATTGGGATAACACA
1 T--AAGTCAAAAAATAA-AAAATGACTAGGACAACACA
* ** * *
8289945 GTAAGTCAAAAAATAAAGAACAACTAGGACAAAATCG
1 -TAAGTCAAAAAATAAAAAATGACTAGGACAACA-CA
* * * * * *
8289982 CAAGTCCAAAAATAAAGAACGATTAAGACAACATCA
1 TAAGTCAAAAAATAAAAAATGACTAGGACAACA-CA
* * ** * * **
8290018 CAAG-CCAAAAATAAAGCACGACCAGGATGACACTA
1 TAAGTCAAAAAATAAAAAATGACTAGGACAACAC-A
8290053 TAAGTCAAAAAATAAA
1 TAAGTCAAAAAATAAA
8290069 GAACGATCAA
Statistics
Matches: 781, Mismatches: 210, Indels: 153
0.68 0.18 0.13
Matches are distributed among these distances:
32 19 0.02
33 7 0.01
34 16 0.02
35 84 0.11
36 328 0.42
37 286 0.37
38 7 0.01
39 5 0.01
40 27 0.03
41 2 0.00
ACGTcount: A:0.55, C:0.14, G:0.16, T:0.16
Consensus pattern (35 bp):
TAAGTCAAAAAATAAAAAATGACTAGGACAACACA
Found at i:8289498 original size:73 final size:72
Alignment explanation
Indices: 8289147--8289718 Score: 288
Period size: 73 Copynumber: 7.8 Consensus size: 72
8289137 ATGACACCAT
* * * ** *
8289147 AAGTT-GAAAA-AAAGAAACGATTAGGACAACATCGCAAG-TAAGAAAATAAGAAAACGA-TCGG
1 AAGTTAGAAAATAAA-AAATGACTAGGACAACAACATAAGTTAA-AAAATAA-AAAATGACT-GG
*
8289208 GACAACATTGT
62 GACAACATTGC
* * * ** * * *
8289219 AAGTCAGAAAATAAAGAACGACTAGGATGA-TACTGTAAGTTAAAAAATAAAAAAATGA-TGAAG
1 AAGTTAGAAAATAAAAAATGACTAGGACAACAAC-ATAAGTTAAAAAAT-AAAAAATGACTG-GG
*
8289282 ACAACACTGC
63 ACAACATTGC
* * * *
8289292 AAGTTAGAAAATAAAAAAATGAC-AGGGATAACACCATAAGTTAAAAAATAAAGAAT-AATCGGG
1 AAGTTAGAAAAT-AAAAAATGACTA-GGACAACAACATAAGTTAAAAAATAAAAAATGACT-GGG
* *
8289355 ACAATATCGC
63 ACAACATTGC
* * * *
8289365 AAGTTAGAAAATAAAAAATGATTAGGACAACAACACAAGTAAAAAAATAAGAAAACGACTGGGAC
1 AAGTTAGAAAATAAAAAATGACTAGGACAACAACATAAGTTAAAAAATAA-AAAATGACTGGGAC
8289430 AACATTGC
65 AACATTGC
* * * * * *
8289438 AAGTTAGAAAATAAGAAAATGACTAAGACAACATCATAAGTCAAAAAATAAAGAATGACTGAGAT
1 AAGTTAGAAAATAA-AAAATGACTAGGACAACAACATAAGTTAAAAAATAAAAAATGACTGGGAC
* * *
8289503 GACACTGT
65 AACATTGC
* * * * * **
8289511 AAGTCA-AAAAGCAAAGAATGACT--GA-TACAACACTGCAAGTCAAAAAATAAAAAAAAAACAA
1 AAGTTAGAAAA-TAAAAAATGACTAGGACAACAACA-T--AAGTTAAAAAAT-AAAAAATGAC--
****
8289572 ATGGGACAACACCAA
59 -TGGGACAACATTGC
* * *** * *
8289587 AAGTTAAAAAATAAAAAAATGACTAGGACGACAATGCAAGTTAAAAAATAAGAAAATGACCGAGA
1 AAGTTAGAAAAT-AAAAAATGACTAGGACAACAACATAAGTTAAAAAATAA-AAAATGACTGGGA
* **
8289652 CAACACTAT
64 CAACATTGC
* * * ** *
8289661 AAGTCAGAAAATAAAGAATGATTAGGATGACACCATAAGTTAAAAAA-ATAAAAATGAC
1 AAGTTAGAAAATAAAAAATGACTAGGACAACAACATAAGTTAAAAAATA-AAAAATGAC
8289719 CCAGACAATG
Statistics
Matches: 387, Mismatches: 83, Indels: 60
0.73 0.16 0.11
Matches are distributed among these distances:
69 5 0.01
70 3 0.01
72 71 0.18
73 167 0.43
74 88 0.23
75 1 0.00
76 15 0.04
77 31 0.08
79 2 0.01
80 4 0.01
ACGTcount: A:0.55, C:0.12, G:0.16, T:0.16
Consensus pattern (72 bp):
AAGTTAGAAAATAAAAAATGACTAGGACAACAACATAAGTTAAAAAATAAAAAATGACTGGGACA
ACATTGC
Found at i:8289514 original size:36 final size:36
Alignment explanation
Indices: 8289208--8289964 Score: 211
Period size: 36 Copynumber: 20.8 Consensus size: 36
8289198 AAACGATCGG
* * *
8289208 GACAACATTGTAAGTCAGAAAATAAAGAACGACT-A
1 GACAACACTGTAAGTCAAAAAATAAAGAATGACTGA
** * * *
8289243 GGATGATACTGTAAGTTAAAAAATAAAAAAATGA-TGAA
1 -GACAACACTGTAAGTCAAAAAAT-AAAGAATGACTG-A
* * * * * *
8289281 GACAACACTGCAAGTTAGAAAATAAAAAAATGACAGG
1 GACAACACTGTAAGTCAAAAAAT-AAAGAATGACTGA
* ** * * *
8289318 GATAACACCATAAGTTAAAAAATAAAGAAT-AATCGG
1 GACAACACTGTAAGTCAAAAAATAAAGAATGACT-GA
* * * * * *
8289354 GACAATA-TCGCAAGTTAGAAAATAAAAAATGA-TTA
1 GACAACACT-GTAAGTCAAAAAATAAAGAATGACTGA
** * * * *
8289389 GGACAACAAC-ACAAGTAAAAAAATAAGAAAACGACTGG
1 -GACAAC-ACTGTAAGTCAAAAAATAA-AGAATGACTGA
* * * * * *
8289427 GACAACATTGCAAGTTAGAAAATAAGAAAATGACTAA
1 GACAACACTGTAAGTCAAAAAATAA-AGAATGACTGA
*
8289464 GACAACA-TCATAAGTCAAAAAATAAAGAATGACTGA
1 GACAACACT-GTAAGTCAAAAAATAAAGAATGACTGA
** **
8289500 GATGACACTGTAAGTCAAAAAGCAAAGAATGACTGA
1 GACAACACTGTAAGTCAAAAAATAAAGAATGACTGA
* * * ** *
8289536 TACAACACTGCAAGTCAAAAAATAAAAAAAAAACAAATGG
1 GACAACACTGTAAGTCAAAAAAT-AAAGAATGAC---TGA
*** * *
8289576 GACAACACCAAAAGTTAAAAAATAAAAAAATGACT-A
1 GACAACACTGTAAGTCAAAAAAT-AAAGAATGACTGA
* * * * * *
8289612 GGACGACAATGCAAGTTAAAAAATAAGAAAATGACCGA
1 -GACAACACTGTAAGTCAAAAAATAA-AGAATGACTGA
* * *
8289650 GACAACACTATAAGTCAGAAAATAAAGAATGA-TTA
1 GACAACACTGTAAGTCAAAAAATAAAGAATGACTGA
** ** * **
8289685 GGATGACACCATAAGTTAAAAAAATAAA-AATGACCCA
1 -GACAACACTGTAAG-TCAAAAAATAAAGAATGACTGA
** ** **
8289722 GACAATGCTACAAGTCAAAAAATAAAGAACAACT-A
1 GACAACACTGTAAGTCAAAAAATAAAGAATGACTGA
* ** * *
8289757 GGACGACACTGTAAGTTGAAAAATAAGACAATGACTGG
1 -GACAACACTGTAAGTCAAAAAATAA-AGAATGACTGA
* * * **
8289795 GATAATA-TCGTAAGTCAAAAAAT-AAGAAACGACCAA
1 GACAACACT-GTAAGTCAAAAAATAAAG-AATGACTGA
* * *
8289831 GATAACACTATAAGTCAGAAAA-AAA-AA--ACT-A
1 GACAACACTGTAAGTCAAAAAATAAAGAATGACTGA
* ** * * *
8289862 CGATAACACCATAAATCAAAAAATAAAGAACGA-TCA
1 -GACAACACTGTAAGTCAAAAAATAAAGAATGACTGA
* * * * * *
8289898 GGACAACATTGCAAGTTAAAAAATAAGAAAATGATTGG
1 -GACAACACTGTAAGTCAAAAAATAA-AGAATGACTGA
* *
8289936 GATAACACAGTAAGTCAAAAAATAAAGAA
1 GACAACACTGTAAGTCAAAAAATAAAGAA
8289965 CAACTAGGAC
Statistics
Matches: 527, Mismatches: 153, Indels: 82
0.69 0.20 0.11
Matches are distributed among these distances:
31 1 0.00
32 21 0.04
33 3 0.01
34 4 0.01
35 16 0.03
36 227 0.43
37 221 0.42
38 5 0.01
40 29 0.06
ACGTcount: A:0.55, C:0.13, G:0.16, T:0.17
Consensus pattern (36 bp):
GACAACACTGTAAGTCAAAAAATAAAGAATGACTGA
Found at i:8289531 original size:146 final size:144
Alignment explanation
Indices: 8289208--8289714 Score: 400
Period size: 146 Copynumber: 3.4 Consensus size: 144
8289198 AAACGATCGG
* * * ** * ** *
8289208 GACAACATTGTAAGTCAGAAAATAAAGAACGACTAGGATGA-TACTGTAAGTTAAAAAATAAAAA
1 GACAACACTGTAAGTCAGAAAATAAAGAATGATTAGGACAACAAC-ACAAGTAAAAAAATAAAAA
* * *
8289272 AATGATGAAGACAACACTGCAAGTTAGAAAATAAAAAAATGAC-AGGGATAACACCATAAGTTAA
65 AACGATG-GGACAACACTGCAAGTTAGAAAATAAAAAAATGACTA-GGACAACA-CATAAGTTAA
* *
8289336 AAAATAAAGAAT-AATCGG
127 AAAATAAAGAATGACT-GA
* * * * *
8289354 GACAATA-TCGCAAGTTAGAAAATAAAAAATGATTAGGACAACAACACAAGTAAAAAAATAAGAA
1 GACAACACT-GTAAGTCAGAAAATAAAGAATGATTAGGACAACAACACAAGTAAAAAAATAAAAA
* * * *
8289418 AACGACTGGGACAACATTGCAAGTTAGAAAATAAGAAAATGACTAAGACAACATCATAAGTCAAA
65 AACGA-TGGGACAACACTGCAAGTTAGAAAATAAAAAAATGACTAGGACAACA-CATAAGTTAAA
8289483 AAATAAAGAATGACTGA
128 AAATAAAGAATGACTGA
** * * * * *
8289500 GATGACACTGTAAGTCA-AAAAGCAAAGAATGACT-GATACAAC-ACTGCAAGTCAAAAAATAAA
1 GACAACACTGTAAGTCAGAAAA-TAAAGAATGATTAG-GACAACAAC-ACAAGT--AAAAA-AAT
* *** * *
8289562 AAAAAAACAAATGGGACAACACCAAAAGTTAAAAAATAAAAAAATGACTAGGACGACA-ATGCAA
60 AAAAAAAC-GATGGGACAACACTGCAAGTTAGAAAATAAAAAAATGACTAGGACAACACAT--AA
* *
8289626 GTTAAAAAATAAGAAAATGACCGA
122 GTTAAAAAATAA-AGAATGACTGA
* ** * *
8289650 GACAACACTATAAGTCAGAAAATAAAGAATGATTAGGATGACACCATAAGTTAAAAAAATAAAAA
1 GACAACACTGTAAGTCAGAAAATAAAGAATGATTAGGACAACAACACAAG-TAAAAAAATAAAAA
8289715 TGACCCAGAC
Statistics
Matches: 282, Mismatches: 59, Indels: 38
0.74 0.16 0.10
Matches are distributed among these distances:
145 8 0.03
146 139 0.49
147 10 0.04
148 12 0.04
149 66 0.23
150 40 0.14
151 7 0.02
ACGTcount: A:0.56, C:0.12, G:0.16, T:0.17
Consensus pattern (144 bp):
GACAACACTGTAAGTCAGAAAATAAAGAATGATTAGGACAACAACACAAGTAAAAAAATAAAAAA
ACGATGGGACAACACTGCAAGTTAGAAAATAAAAAAATGACTAGGACAACACATAAGTTAAAAAA
TAAAGAATGACTGA
Found at i:8289738 original size:186 final size:186
Alignment explanation
Indices: 8289389--8289747 Score: 454
Period size: 186 Copynumber: 1.9 Consensus size: 186
8289379 AAAATGATTA
* * * * *
8289389 GGACAACAACACAAGTAAAAAAATAAGAAAACGACTGGGACAACATTGCAAGTTAGAAAATAAGA
1 GGACAACAACAAAAGTAAAAAAATAAAAAAACGACTAGGACAACAATGCAAGTTAAAAAATAAGA
* **
8289454 AAATGACTAAGACAACATCATAAGTCAAAAAATAAAGAATGACTGAGATGACACTGTAAGTCAAA
66 AAATGACCAAGACAACATCATAAGTCAAAAAATAAAGAATGACTGAGATGACACCATAAGTCAAA
* * ** * *
8289519 AAGCAAAGAATGACTGATACAACACTGCAAGTCAAAAAATAAAAAAAAAACAAATG
131 AAGAAAAAAATGACCCAGACAACACTACAAGTCAAAAAATAAAAAAAAAACAAATG
* * * *
8289575 GGACAACACCAAAAGTTAAAAAATAAAAAAATGACTAGGACGACAATGCAAGTTAAAAAATAAGA
1 GGACAACAACAAAAGTAAAAAAATAAAAAAACGACTAGGACAACAATGCAAGTTAAAAAATAAGA
* * * *
8289640 AAATGACCGAGACAACA-CTATAAGTCAGAAAATAAAGAATGA-TTAGGATGACACCATAAGTTA
66 AAATGACCAAGACAACATC-ATAAGTCAAAAAATAAAGAATGACTGA-GATGACACCATAAGTCA
**
8289703 AAAA-AATAAAAATGACCCAGACAATGCTACAAGTCAAAAAATAAA
129 AAAAGAA-AAAAATGACCCAGACAACACTACAAGTCAAAAAATAAA
8289748 GAACAACTAG
Statistics
Matches: 146, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
185 4 0.03
186 142 0.97
ACGTcount: A:0.56, C:0.14, G:0.15, T:0.15
Consensus pattern (186 bp):
GGACAACAACAAAAGTAAAAAAATAAAAAAACGACTAGGACAACAATGCAAGTTAAAAAATAAGA
AAATGACCAAGACAACATCATAAGTCAAAAAATAAAGAATGACTGAGATGACACCATAAGTCAAA
AAGAAAAAAATGACCCAGACAACACTACAAGTCAAAAAATAAAAAAAAAACAAATG
Found at i:8289839 original size:73 final size:71
Alignment explanation
Indices: 8289733--8289965 Score: 201
Period size: 73 Copynumber: 3.3 Consensus size: 71
8289723 ACAATGCTAC
* * * *
8289733 AAGTCAAAAAATAAAGAACAACTAGGACGACACTGTAAGTTGAAAAATAAGACAATGACTGGGAT
1 AAGTCAAAAAATAAAGAACGACCAAGACAACACTGTAAGTTGAAAAATAAGA-AATGACTGGGAT
*
8289798 AATATCGT
65 AACA-CGT
* * *
8289806 AAGTCAAAAAAT-AAGAAACGACCAAGATAACACTATAAGTCAGAAAAA-AA-AAACT-AC---G
1 AAGTCAAAAAATAAAG-AACGACCAAGACAACACTGTAAGT-TGAAAAATAAGAAA-TGACTGGG
*
8289864 ATAACACCAT
63 ATAACA-CGT
* * * * * * *
8289874 AAATCAAAAAATAAAGAACGATCAGGACAACATTGCAAGTTAAAAAATAAGAAAATGATTGGGAT
1 AAGTCAAAAAATAAAGAACGACCAAGACAACACTGTAAGTTGAAAAATAAG-AAATGACTGGGAT
8289939 AACACAGT
65 AACAC-GT
8289947 AAGTCAAAAAATAAAGAAC
1 AAGTCAAAAAATAAAGAAC
8289966 AACTAGGACA
Statistics
Matches: 126, Mismatches: 22, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
67 5 0.04
68 39 0.31
69 4 0.03
70 4 0.03
71 4 0.03
72 6 0.05
73 58 0.46
74 6 0.05
ACGTcount: A:0.55, C:0.13, G:0.15, T:0.16
Consensus pattern (71 bp):
AAGTCAAAAAATAAAGAACGACCAAGACAACACTGTAAGTTGAAAAATAAGAAATGACTGGGATA
ACACGT
Found at i:8290094 original size:36 final size:36
Alignment explanation
Indices: 8289877--8290097 Score: 146
Period size: 36 Copynumber: 6.1 Consensus size: 36
8289867 ACACCATAAA
**
8289877 TCAAAAAATAAAGAACGATCAGGACAACATTGCAAG
1 TCAAAAAATAAAGAACGATCAGGACAACAACGCAAG
* * * ** * *
8289913 TTAAAAAATAAGAAAATGATTGGGATAAC-ACAGTAAG
1 TCAAAAAATAA-AGAACGATCAGGACAACAAC-GCAAG
*
8289950 TCAAAAAATAAAGAAC-AACTAGGACAA-AATCGCAAG
1 TCAAAAAATAAAGAACGATC-AGGACAACAA-CGCAAG
* * * * *
8289986 TCCAAAAATAAAGAACGATTAAGACAACATCACAAG
1 TCAAAAAATAAAGAACGATCAGGACAACAACGCAAG
* * * ** **
8290022 -CCAAAAATAAAGCACGACCAGGATGAC-ACTATAAG
1 TCAAAAAATAAAGAACGATCAGGACAACAAC-GCAAG
* *
8290057 TCAAAAAATAAAGAACGATCAAGATAACAACGCAAG
1 TCAAAAAATAAAGAACGATCAGGACAACAACGCAAG
8290093 TCAAA
1 TCAAA
8290098 CAAAATGATC
Statistics
Matches: 137, Mismatches: 38, Indels: 20
0.70 0.19 0.10
Matches are distributed among these distances:
34 1 0.01
35 26 0.19
36 79 0.58
37 31 0.23
ACGTcount: A:0.55, C:0.16, G:0.15, T:0.14
Consensus pattern (36 bp):
TCAAAAAATAAAGAACGATCAGGACAACAACGCAAG
Found at i:8290505 original size:34 final size:34
Alignment explanation
Indices: 8290404--8290548 Score: 115
Period size: 34 Copynumber: 4.4 Consensus size: 34
8290394 GCAGCTAAGT
* * * *
8290404 TGGGTTTAAAATCTTTATT-GGATGCTAGGTAAAT
1 TGGGCTTAAAATCTTTATTAGG-TGCCAAGTAAAC
* * *
8290438 TGGGTTTAAAATCATTT-TTTGGTGTC-AGATAAAC
1 TGGGCTTAAAATC-TTTATTAGGTGCCAAG-TAAAC
8290472 TGGGCTTAAAATCTTTATTAGGTGCCAAGTAAAC
1 TGGGCTTAAAATCTTTATTAGGTGCCAAGTAAAC
* *
8290506 TGAGCTT-AAA-CTTTCACTA-GTGCCAAGTAAA-
1 TGGGCTTAAAATCTTT-ATTAGGTGCCAAGTAAAC
*
8290537 TTGGCTTAAAAT
1 TGGGCTTAAAAT
8290549 TTTCATCAGG
Statistics
Matches: 92, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
31 5 0.05
32 19 0.21
33 10 0.11
34 51 0.55
35 7 0.08
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.37
Consensus pattern (34 bp):
TGGGCTTAAAATCTTTATTAGGTGCCAAGTAAAC
Found at i:8290553 original size:32 final size:33
Alignment explanation
Indices: 8290467--8290553 Score: 99
Period size: 32 Copynumber: 2.6 Consensus size: 33
8290457 TGGTGTCAGA
*
8290467 TAAACTGGGCTTAAAATCTTT-ATTAGGTGCCAAG
1 TAAACT-GGCTTAAAAT-TTTCACTAGGTGCCAAG
*
8290501 TAAACTGAGCTT-AAACTTTCACTA-GTGCCAAG
1 TAAACTG-GCTTAAAATTTTCACTAGGTGCCAAG
*
8290533 TAAATTGGCTTAAAATTTTCA
1 TAAACTGGCTTAAAATTTTCA
8290554 TCAGGGTATA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
31 4 0.09
32 25 0.54
33 7 0.15
34 10 0.22
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Consensus pattern (33 bp):
TAAACTGGCTTAAAATTTTCACTAGGTGCCAAG
Found at i:8290673 original size:201 final size:200
Alignment explanation
Indices: 8290328--8290693 Score: 460
Period size: 201 Copynumber: 1.8 Consensus size: 200
8290318 TTCATTGGGG
* * * *
8290328 CAAGATAAATTGAGCTTAAAATTTTCATCAATGGCCAGATAAATTAGGCTTAAATTTTCATTAGA
1 CAAGATAAATTGAGCTTAAAATTTTCATCAAGGGACAAATAAATTAGGCTTAAATTTTCATAAGA
** * *
8290393 AGCAGCTAAGTTGGGTTTAAAATCTTTATTGGATGCTAGGTAAATTGGGTTTAAAATCATTTTTT
66 AGCAGCTAAGTTGGGTTTAAAATCTTTATAAGATGCTAGGTAAACTGGGCTTAAAATCATTTTTT
* * *
8290458 GGTGTCAGATAAACTGGGCTTAAAATCTTTATTAGGTGCCAAGTAAACTGAGCTTAAACTTTCAC
131 GGTGTCAAATAAACTAGGCTTAAAAT-TTCATTAGGTGCCAAGTAAACTGAGCTTAAACTTTCAC
8290523 TAGTGC
195 TAGTGC
*
8290529 CAAG-TAAATTG-GCTTAAAATTTTCATC-AGGGTATAAAT-AATCTAGGCTTAAATTTTCACTA
1 CAAGATAAATTGAGCTTAAAATTTTCATCAAGGG-ACAAATAAAT-TAGGCTTAAATTTTCA-TA
* *
8290590 AG-AGCTTGCTAAGTTGGGCTTTAAAATCTTTATCAAG-TG-TCAGGTCAACTGGGCTTAAAAT-
63 AGAAGC-AGCTAAGTTGGG-TTTAAAATCTTTAT-AAGATGCT-AGGTAAACTGGGCTTAAAATC
*
8290651 TTTTCTTTGGTGTCAAATAAACTAGGCTTAAAATTTCATTAGG
124 ATTT-TTTGGTGTCAAATAAACTAGGCTTAAAATTTCATTAGG
8290694 GGCTAGACTA
Statistics
Matches: 142, Mismatches: 15, Indels: 17
0.82 0.09 0.10
Matches are distributed among these distances:
198 6 0.04
199 38 0.27
200 33 0.23
201 64 0.45
202 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (200 bp):
CAAGATAAATTGAGCTTAAAATTTTCATCAAGGGACAAATAAATTAGGCTTAAATTTTCATAAGA
AGCAGCTAAGTTGGGTTTAAAATCTTTATAAGATGCTAGGTAAACTGGGCTTAAAATCATTTTTT
GGTGTCAAATAAACTAGGCTTAAAATTTCATTAGGTGCCAAGTAAACTGAGCTTAAACTTTCACT
AGTGC
Found at i:8291107 original size:33 final size:33
Alignment explanation
Indices: 8290840--8291112 Score: 128
Period size: 34 Copynumber: 8.1 Consensus size: 33
8290830 AGTTGGGCTT
* * * * *
8290840 TTAAAATCTTCATCGAGTGCTAGGTAAACTGGGC
1 TTAAAAT-TTTATCGGGTGCCAGATAAACTAGGC
* *
8290874 TTAAAATTTT-TCTTTGGTGCCAGATAAATTAGGC
1 TTAAAATTTTATC--GGGTGCCAGATAAACTAGGC
* **
8290908 TTAAAATCTTTATTGGGTGTTA-AGTAAACT-GAGC
1 TTAAAAT-TTTATCGGGTGCCAGA-TAAACTAG-GC
* * *
8290942 TTAAACTTTCA-CTGGTGCCA-AGTAAACT-GAGC
1 TTAAAATTTTATCGGGTGCCAGA-TAAACTAG-GC
* * * * ** *
8290974 TTAAATTTTTACTAGGG-GTCAGTTAAGTTAAGC
1 TTAAAATTTTA-TCGGGTGCCAGATAAACTAGGC
* * **
8291007 TTTAAAATTTTCATCGGGTGCTAGGTAAACTAAAC
1 -TTAAAATTTT-ATCGGGTGCCAGATAAACTAGGC
* * * *
8291042 TTAAAATCTTTCTCTGGTGCGAGAAAAACTAGGC
1 TTAAAAT-TTTATCGGGTGCCAGATAAACTAGGC
*
8291076 TTAAAATTTTATCGGGGGCCAGATAAACTAGGC
1 TTAAAATTTTATCGGGTGCCAGATAAACTAGGC
8291109 TTAA
1 TTAA
8291113 GACTTCATTG
Statistics
Matches: 178, Mismatches: 47, Indels: 29
0.70 0.19 0.11
Matches are distributed among these distances:
32 28 0.16
33 41 0.23
34 91 0.51
35 17 0.10
36 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (33 bp):
TTAAAATTTTATCGGGTGCCAGATAAACTAGGC
Found at i:8291381 original size:17 final size:17
Alignment explanation
Indices: 8291359--8291397 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
8291349 GTTTATTTAA
8291359 AAGGGTTTCAACACTTG
1 AAGGGTTTCAACACTTG
8291376 AAGGGTTTCAACACTTG
1 AAGGGTTTCAACACTTG
8291393 AAGGG
1 AAGGG
8291398 AATAAAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (17 bp):
AAGGGTTTCAACACTTG
Done.