Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 39 of 131
Found at i:8404821 original size:50 final size:50
Alignment explanation
Indices: 8404727--8404839 Score: 120
Period size: 50 Copynumber: 2.3 Consensus size: 50
8404717 ATGAGGTATC
* * * * *
8404727 TTCAAATAAGTTTTTTAAAGTTTCAAAGCCTCTATTGGGGAAGAG-CTATT
1 TTCAAACAAGATTTTCAAAGTTTCAAAACCTCTATTGGGAAAGAGTC-ATT
* ***
8404777 TTCAGACAAGATTTTCAAAGTTTCAAAACCTCTATTTTTAAAGAGTCATT
1 TTCAAACAAGATTTTCAAAGTTTCAAAACCTCTATTGGGAAAGAGTCATT
*
8404827 TTTAAACAAGATT
1 TTCAAACAAGATT
8404840 CCTTTTAAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
50 50 0.98
51 1 0.02
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (50 bp):
TTCAAACAAGATTTTCAAAGTTTCAAAACCTCTATTGGGAAAGAGTCATT
Found at i:8405247 original size:25 final size:25
Alignment explanation
Indices: 8405211--8405266 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
8405201 TTCATCCCTC
8405211 TCATCTTTATTTTTGACTTGTGGCT
1 TCATCTTTATTTTTGACTTGTGGCT
* *
8405236 TTATCTTTATTTTTTACTTGTGGCT
1 TCATCTTTATTTTTGACTTGTGGCT
8405261 TCATCT
1 TCATCT
8405267 GGTTATCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.59
Consensus pattern (25 bp):
TCATCTTTATTTTTGACTTGTGGCT
Found at i:8405349 original size:35 final size:34
Alignment explanation
Indices: 8405236--8405349 Score: 124
Period size: 34 Copynumber: 3.4 Consensus size: 34
8405226 ACTTGTGGCT
*
8405236 TTATCTTTATTTTTTACTTGTGGCTTCAT-CTGG
1 TTATCTTTATTTTTTACTTGTAGCTTCATCCTGG
*
8405269 TTATCTTTATTTTTTAACTTG-AGCTTCATCTTGG
1 TTATCTTTATTTTTT-ACTTGTAGCTTCATCCTGG
** * ** *
8405303 TTATCCCTATTTTTTGACCTGTAGCTTTGTCCCGG
1 TTATCTTTATTTTTT-ACTTGTAGCTTCATCCTGG
8405338 TTATCTTTATTT
1 TTATCTTTATTT
8405350 CCTCGACTTA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
33 22 0.33
34 25 0.38
35 19 0.29
ACGTcount: A:0.14, C:0.18, G:0.13, T:0.55
Consensus pattern (34 bp):
TTATCTTTATTTTTTACTTGTAGCTTCATCCTGG
Found at i:8405471 original size:35 final size:35
Alignment explanation
Indices: 8405443--8405552 Score: 116
Period size: 35 Copynumber: 3.1 Consensus size: 35
8405433 CTTTATATCG
* * *
8405443 GTCATTCTTATTTTTTGATTTACGACTTTATCCTA
1 GTCATCCTTATTTTTTAACTTACGACTTTATCCTA
*
8405478 GTCATCCTTATTTTTTAACTTACGACTTTGT-CTCA
1 GTCATCCTTATTTTTTAACTTACGACTTTATCCT-A
* * **
8405513 GTCATCTTTATTTCTTAACTTGTGA-TTTAGTCCTA
1 GTCATCCTTATTTTTTAACTTACGACTTTA-TCCTA
8405548 GTCAT
1 GTCAT
8405553 ATTTTATTTC
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
34 5 0.08
35 56 0.89
36 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.10, T:0.51
Consensus pattern (35 bp):
GTCATCCTTATTTTTTAACTTACGACTTTATCCTA
Found at i:8405723 original size:8 final size:8
Alignment explanation
Indices: 8405706--8405801 Score: 61
Period size: 8 Copynumber: 11.6 Consensus size: 8
8405696 AATTTAAAAT
8405706 AAAAACAA
1 AAAAACAA
8405714 AAACAA-AA
1 AAA-AACAA
8405722 AAAAACACA
1 AAAAACA-A
*
8405731 AAATA-AA
1 AAAAACAA
*
8405738 AAAAACAT
1 AAAAACAA
*
8405746 AAAAACAT
1 AAAAACAA
* *
8405754 AAACATAA
1 AAAAACAA
*
8405762 AAAAATAA
1 AAAAACAA
*
8405770 AAAAATAA
1 AAAAACAA
*
8405778 AAACAAAAA
1 AAA-AACAA
8405787 CAAAAACATA
1 -AAAAACA-A
8405797 AAAAA
1 AAAAA
8405802 AGAGTTCTCT
Statistics
Matches: 72, Mismatches: 9, Indels: 13
0.77 0.10 0.14
Matches are distributed among these distances:
7 7 0.10
8 42 0.58
9 19 0.26
10 4 0.06
ACGTcount: A:0.82, C:0.10, G:0.00, T:0.07
Consensus pattern (8 bp):
AAAAACAA
Found at i:8405727 original size:16 final size:17
Alignment explanation
Indices: 8405701--8405791 Score: 82
Period size: 17 Copynumber: 5.2 Consensus size: 17
8405691 ACAAAAATTT
8405701 AAAATAAAAACAAAAAC
1 AAAATAAAAACAAAAAC
*
8405718 AAAA-AAAAACACAAAAT
1 AAAATAAAAACA-AAAAC
*
8405735 AAAA-AAAACATAAAAAC
1 AAAATAAAA-ACAAAAAC
8405752 ATAAACATAAAAA-AATAAA-
1 --AAA-ATAAAAACAA-AAAC
8405771 AAAATAAAAACAAAAAC
1 AAAATAAAAACAAAAAC
8405788 AAAA
1 AAAA
8405792 ACATAAAAAA
Statistics
Matches: 62, Mismatches: 3, Indels: 18
0.75 0.04 0.22
Matches are distributed among these distances:
16 17 0.27
17 29 0.47
18 2 0.03
19 5 0.08
20 5 0.08
21 4 0.06
ACGTcount: A:0.82, C:0.10, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAATAAAAACAAAAAC
Found at i:8405793 original size:6 final size:6
Alignment explanation
Indices: 8405701--8405799 Score: 73
Period size: 6 Copynumber: 16.7 Consensus size: 6
8405691 ACAAAAATTT
* * * *
8405701 AAAATA AAAACA AAAAC- AAAA-A AAAACA CAAAATA AAAA-A AACATA
1 AAAACA AAAACA AAAACA AAAACA AAAACA -AAAACA AAAACA AAAACA
* *
8405747 AAAACA TAAACA TAAAA-A AATAA-A AAAATA AAAACA AAAACA AAAACA
1 AAAACA AAAACA -AAAACA AA-AACA AAAACA AAAACA AAAACA AAAACA
8405795 TAAAA
1 -AAAA
8405800 AAAGAGTTCT
Statistics
Matches: 77, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
5 16 0.21
6 49 0.64
7 12 0.16
ACGTcount: A:0.82, C:0.10, G:0.00, T:0.08
Consensus pattern (6 bp):
AAAACA
Found at i:8413841 original size:22 final size:20
Alignment explanation
Indices: 8413814--8413861 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
8413804 AAAAAATATT
8413814 ATAATAATTCATTTAGATAAAA
1 ATAATAATT--TTTAGATAAAA
* *
8413836 ATAAT-ATTTTTTGGTAAAA
1 ATAATAATTTTTAGATAAAA
8413855 ATAATAA
1 ATAATAA
8413862 GTTGAATCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 14 0.61
20 1 0.04
21 3 0.13
22 5 0.22
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (20 bp):
ATAATAATTTTTAGATAAAA
Found at i:8415799 original size:13 final size:13
Alignment explanation
Indices: 8415765--8415799 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
8415755 AACTTCAGTC
*
8415765 TTTTTTTCTCTTT
1 TTTTTTTTTCTTT
*
8415778 TTTTCTTTTCTTT
1 TTTTTTTTTCTTT
8415791 TTTTTTTTT
1 TTTTTTTTT
8415800 TAATTTTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (13 bp):
TTTTTTTTTCTTT
Found at i:8417319 original size:21 final size:22
Alignment explanation
Indices: 8417295--8417365 Score: 76
Period size: 21 Copynumber: 3.3 Consensus size: 22
8417285 TAATGGATAC
8417295 TTTTAATATA-AAATATAAATA
1 TTTTAATATATAAATATAAATA
* *
8417316 TTTTAATA-ATAAATATTACTA
1 TTTTAATATATAAATATAAATA
*
8417337 TTTTAATATTAATAAAAAT-AATA
1 TTTTAATA-T-ATAAATATAAATA
8417360 TTTTAA
1 TTTTAA
8417366 GAATAGTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
20 1 0.02
21 25 0.60
23 9 0.21
24 7 0.17
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (22 bp):
TTTTAATATATAAATATAAATA
Found at i:8417389 original size:44 final size:46
Alignment explanation
Indices: 8417302--8417398 Score: 112
Period size: 44 Copynumber: 2.2 Consensus size: 46
8417292 TACTTTTAAT
* * *
8417302 ATAAAATATAAATATTTTAATAATAAATATTACTATTTTAATATTA
1 ATAAAATATAAATATTTTAAGAATAAATAATACTATTTAAATATTA
*
8417348 ATAAAA-AT-AATATTTTAAGAAT-AGTAATACTATTTGAAATATT-
1 ATAAAATATAAATATTTTAAGAATAAATAATACTATTT-AAATATTA
*
8417391 TTAAAATA
1 ATAAAATA
8417399 CTAATATAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
43 16 0.36
44 20 0.45
45 2 0.05
46 6 0.14
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (46 bp):
ATAAAATATAAATATTTTAAGAATAAATAATACTATTTAAATATTA
Found at i:8417473 original size:13 final size:14
Alignment explanation
Indices: 8417455--8417489 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
8417445 AAGTAATATT
8417455 TTATTATTAAA-TA
1 TTATTATTAAAGTA
8417468 TTATTATTAAAGTA
1 TTATTATTAAAGTA
*
8417482 TAATTATT
1 TTATTATT
8417490 CTTGAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (14 bp):
TTATTATTAAAGTA
Found at i:8417498 original size:30 final size:32
Alignment explanation
Indices: 8417440--8417505 Score: 82
Period size: 30 Copynumber: 2.1 Consensus size: 32
8417430 AGTGTTTTTA
* *
8417440 TATTAAAGTAATATTTTATTATTAAATATTAT
1 TATTAAAGTAATATATTATTATTAAATATTAG
* *
8417472 TATTAAAGT-ATA-ATTATTCTTGAATATTAG
1 TATTAAAGTAATATATTATTATTAAATATTAG
8417502 TATT
1 TATT
8417506 TTTAATAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 18 0.60
31 3 0.10
32 9 0.30
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.52
Consensus pattern (32 bp):
TATTAAAGTAATATATTATTATTAAATATTAG
Found at i:8418504 original size:4 final size:4
Alignment explanation
Indices: 8418495--8418521 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8418485 GTCGGTGAGT
8418495 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
8418522 TATCATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:8420066 original size:6 final size:7
Alignment explanation
Indices: 8420041--8420072 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
8420031 TTCTGTGAAA
8420041 AAAACAAT
1 AAAA-AAT
8420049 AAAAAAT
1 AAAAAAT
8420056 AAAAAAT
1 AAAAAAT
8420063 AAAAAAT
1 AAAAAAT
8420070 AAA
1 AAA
8420073 CACACAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:8422201 original size:41 final size:41
Alignment explanation
Indices: 8422144--8422225 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
8422134 GTAAACTTAA
*
8422144 AAAAAAATAATTTTTTTAGTGTTTTAAACAAGATGTCAAAT
1 AAAAAAATAATATTTTTAGTGTTTTAAACAAGATGTCAAAT
* * *
8422185 AAAAAATTAATATTTTTAGTTTTTTAAACAAGATTTCAAAT
1 AAAAAAATAATATTTTTAGTGTTTTAAACAAGATGTCAAAT
8422226 TTTCAACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.41
Consensus pattern (41 bp):
AAAAAAATAATATTTTTAGTGTTTTAAACAAGATGTCAAAT
Found at i:8423015 original size:23 final size:23
Alignment explanation
Indices: 8422980--8423027 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
8422970 TCATAAATGA
*
8422980 CTTAATACAAGATACATGAATCC
1 CTTAATACAAGATACAGGAATCC
**
8423003 CTTAATAGTAGATACAGGAATCC
1 CTTAATACAAGATACAGGAATCC
8423026 CT
1 CT
8423028 ATGAAGTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (23 bp):
CTTAATACAAGATACAGGAATCC
Found at i:8430104 original size:11 final size:11
Alignment explanation
Indices: 8430075--8430109 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
8430065 ACACAATTTC
*
8430075 TTCTTTTCATT
1 TTCTTTTTATT
8430086 TTCTTTTTATT
1 TTCTTTTTATT
*
8430097 TTCTTTTTCTT
1 TTCTTTTTATT
8430108 TT
1 TT
8430110 TTATTTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (11 bp):
TTCTTTTTATT
Found at i:8430104 original size:17 final size:18
Alignment explanation
Indices: 8430078--8430116 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
8430068 CAATTTCTTC
8430078 TTTTCATTTTC-TTTTTA
1 TTTTCATTTTCTTTTTTA
*
8430095 TTTTCTTTTTCTTTTTTA
1 TTTTCATTTTCTTTTTTA
8430113 TTTT
1 TTTT
8430117 TGATTTGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTCATTTTCTTTTTTA
Found at i:8432475 original size:21 final size:21
Alignment explanation
Indices: 8432424--8432476 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
8432414 TCTAGAAATC
**
8432424 TTTTGAATGTGAATCTTTGAA
1 TTTTGAATGTGAATCTTAAAA
* *
8432445 TCTTGTATGTGAAT-TTAAAAA
1 TTTTGAATGTGAATCTT-AAAA
8432466 TTTTGAATGTG
1 TTTTGAATGTG
8432477 GATTCCTAGA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.47
Consensus pattern (21 bp):
TTTTGAATGTGAATCTTAAAA
Found at i:8432564 original size:33 final size:33
Alignment explanation
Indices: 8432517--8432597 Score: 101
Period size: 33 Copynumber: 2.4 Consensus size: 33
8432507 TATAATGACG
8432517 AAATCTGAAATTCTTATC-AATCTAAATTCTTGCA
1 AAAT-TGAAATTCTTA-CAAATCTAAATTCTTGCA
* *
8432551 AAATTGAAATTCTTACAAATCTAAATTTTTGCG
1 AAATTGAAATTCTTACAAATCTAAATTCTTGCA
* *
8432584 AAACTAAAATTCTT
1 AAATTGAAATTCTT
8432598 GTGAATTTGA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
32 1 0.02
33 37 0.88
34 4 0.10
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (33 bp):
AAATTGAAATTCTTACAAATCTAAATTCTTGCA
Found at i:8432576 original size:16 final size:17
Alignment explanation
Indices: 8432517--8432577 Score: 67
Period size: 16 Copynumber: 3.7 Consensus size: 17
8432507 TATAATGACG
8432517 AAATCTGAAATTCTTATC
1 AAATCTGAAATTCTTA-C
*
8432535 -AATCT-AAATTCTTGC
1 AAATCTGAAATTCTTAC
8432550 AAAAT-TGAAATTCTTAC
1 -AAATCTGAAATTCTTAC
8432567 AAATCT-AAATT
1 AAATCTGAAATT
8432578 TTTGCGAAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
15 1 0.03
16 18 0.49
17 18 0.49
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.38
Consensus pattern (17 bp):
AAATCTGAAATTCTTAC
Found at i:8432636 original size:17 final size:17
Alignment explanation
Indices: 8432518--8432660 Score: 66
Period size: 16 Copynumber: 8.6 Consensus size: 17
8432508 ATAATGACGA
*
8432518 AATCTGAAATTCTT-ATC
1 AATCTGAAATTCTTGA-G
*
8432535 AATCT-AAATTCTTGCAA
1 AATCTGAAATTCTTG-AG
*
8432552 AAT-TGAAATTCTT-ACA
1 AATCTGAAATTCTTGA-G
* *
8432568 AATCT-AAATTTTTGCG
1 AATCTGAAATTCTTGAG
* * *
8432584 AAACTAAAATTCTTGTG
1 AATCTGAAATTCTTGAG
* * *
8432601 AATTTG-AATTCCTAAG
1 AATCTGAAATTCTTGAG
*
8432617 AATCTGAAATTCTTGGG
1 AATCTGAAATTCTTGAG
* * *
8432634 AATATG-AATTATTGGG
1 AATCTGAAATTCTTGAG
*
8432650 AATTTGAAATT
1 AATCTGAAATT
8432661 TTTCTAAATT
Statistics
Matches: 97, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
15 1 0.01
16 50 0.52
17 45 0.46
18 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (17 bp):
AATCTGAAATTCTTGAG
Found at i:8436091 original size:57 final size:55
Alignment explanation
Indices: 8435933--8436091 Score: 148
Period size: 57 Copynumber: 2.9 Consensus size: 55
8435923 ATAATTATTC
* * * ** *
8435933 CACAATTTGGGCCAAATTAGAAATATTTTCTC-TTTTGA-AATTTTTAAAATTTT
1 CACAATTTGGGTCAATTTAGAAATATTTTCTCTTTTTTATTTTTTTTTAAATTTT
** *
8435986 CACAATTTGGGTTTATTTAG-AA-ATTCTCTCTTTTTT-TTGTTGGATTTTTAAATTTT
1 CACAATTTGGGTCAATTTAGAAATATTTTCTCTTTTTTATT-TT---TTTTTAAATTTT
8436042 CTACAATTTGGGTCAATTTAGAAATATTTTCTCTTTATTTATTTTTTTTT
1 C-ACAATTTGGGTCAATTTAGAAATATTTTCTCTTT-TTTATTTTTTTTT
8436092 CTTTAAAAGG
Statistics
Matches: 83, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
51 7 0.08
52 6 0.07
53 17 0.20
56 12 0.14
57 22 0.27
58 2 0.02
59 10 0.12
60 5 0.06
61 2 0.02
ACGTcount: A:0.26, C:0.10, G:0.10, T:0.53
Consensus pattern (55 bp):
CACAATTTGGGTCAATTTAGAAATATTTTCTCTTTTTTATTTTTTTTTAAATTTT
Found at i:8439379 original size:69 final size:69
Alignment explanation
Indices: 8439303--8439441 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
8439293 CTTCTTCATT
8439303 TATAAAACCATTTAGAAATGCACTCTTGACATCCATTTGAAAAAGCTTGAAATTTTTGAAACATA
1 TATAAAACCATTTAGAAATGCACTCTTGACATCCATTTGAAAAAGCTTGAAATTTTTGAAACATA
*
8439368 TAAA
66 CAAA
8439372 TATAAAACCATTTAGAAATGCACTCTTGACATCCATTTGAAAAAGCTTGAAATTTTTGAAACATA
1 TATAAAACCATTTAGAAATGCACTCTTGACATCCATTTGAAAAAGCTTGAAATTTTTGAAACATA
8439437 CAAA
66 CAAA
8439441 T
1 T
8439442 GCAAGTAACA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (69 bp):
TATAAAACCATTTAGAAATGCACTCTTGACATCCATTTGAAAAAGCTTGAAATTTTTGAAACATA
CAAA
Found at i:8440383 original size:38 final size:38
Alignment explanation
Indices: 8440341--8440423 Score: 157
Period size: 38 Copynumber: 2.2 Consensus size: 38
8440331 ATGGTTCTAG
*
8440341 CCATTTTTTTTGAAGTTTTACTTCTCCTTTCTACTATC
1 CCATTTTTTCTGAAGTTTTACTTCTCCTTTCTACTATC
8440379 CCATTTTTTCTGAAGTTTTACTTCTCCTTTCTACTATC
1 CCATTTTTTCTGAAGTTTTACTTCTCCTTTCTACTATC
8440417 CCATTTT
1 CCATTTT
8440424 GTTGAAGAGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.16, C:0.25, G:0.05, T:0.54
Consensus pattern (38 bp):
CCATTTTTTCTGAAGTTTTACTTCTCCTTTCTACTATC
Found at i:8444465 original size:18 final size:18
Alignment explanation
Indices: 8444442--8444500 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
8444432 ATCTCGGTAT
* *
8444442 CTTTGTGACTTTTGGAAC
1 CTTTGTGAATCTTGGAAC
8444460 CTTTGTGAATCTTGGAAC
1 CTTTGTGAATCTTGGAAC
* * *
8444478 CCTGGTGAATCTTAGGAAT
1 CTTTGTGAATCTT-GGAAC
8444497 CTTT
1 CTTT
8444501 ACAAATTTTG
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
18 27 0.82
19 6 0.18
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (18 bp):
CTTTGTGAATCTTGGAAC
Found at i:8444654 original size:34 final size:35
Alignment explanation
Indices: 8444600--8444677 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 35
8444590 ACGAATTTGA
8444600 AAATCTTTGAGAAACTTGAATCTGGGAACCTTTAG
1 AAATCTTTGAGAAACTTGAATCTGGGAACCTTTAG
* * *
8444635 AAATC-TTG-GAAATCTTGAATTTTGGAACCTTTAC
1 AAATCTTTGAGAAA-CTTGAATCTGGGAACCTTTAG
*
8444669 AAACCTTTG
1 AAATCTTTG
8444678 CAAACCTTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
33 4 0.11
34 25 0.68
35 8 0.22
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (35 bp):
AAATCTTTGAGAAACTTGAATCTGGGAACCTTTAG
Found at i:8444675 original size:10 final size:10
Alignment explanation
Indices: 8444660--8444700 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
8444650 TGAATTTTGG
8444660 AACCTTTACA
1 AACCTTTACA
*
8444670 AACCTTTGCA
1 AACCTTTACA
*
8444680 AACC-TT-GA
1 AACCTTTACA
8444688 AACCTTTACA
1 AACCTTTACA
8444698 AAC
1 AAC
8444701 TTTTGCTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
8 5 0.19
9 4 0.15
10 17 0.65
ACGTcount: A:0.39, C:0.29, G:0.05, T:0.27
Consensus pattern (10 bp):
AACCTTTACA
Found at i:8444741 original size:18 final size:18
Alignment explanation
Indices: 8444697--8444741 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
8444687 AAACCTTTAC
*
8444697 AAACTTTTGCTAATCCTA
1 AAACTTTTGCAAATCCTA
* *
8444715 AGACCTTTGCAAATCCTA
1 AAACTTTTGCAAATCCTA
8444733 AAACTTTTG
1 AAACTTTTG
8444742 TGAATCTTGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (18 bp):
AAACTTTTGCAAATCCTA
Found at i:8444785 original size:64 final size:64
Alignment explanation
Indices: 8444683--8444816 Score: 162
Period size: 64 Copynumber: 2.1 Consensus size: 64
8444673 CTTTGCAAAC
* * ** *
8444683 CTTGAAACCTTTACAAACTTTTGCTAATCCTAAGACCTTTGCAAATCCTAAAACTTTTGTGAAT
1 CTTGAAACCTTTACAAACCTTTGCAAATCCTAAGACCTTTGCAAATCCTAAAACCATTGTGAAA
** * * *
8444747 CTTGAAACCTTTACAAACCTTTGCAAATTTTGAA-ACCTTTGTAAATCTTGAAACCATTGTGAAA
1 CTTGAAACCTTTACAAACCTTTGCAAATCCT-AAGACCTTTGCAAATCCTAAAACCATTGTGAAA
8444811 CTTGAA
1 CTTGAA
8444817 TCATTTGATG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
64 57 0.97
65 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.35
Consensus pattern (64 bp):
CTTGAAACCTTTACAAACCTTTGCAAATCCTAAGACCTTTGCAAATCCTAAAACCATTGTGAAA
Found at i:8444806 original size:18 final size:18
Alignment explanation
Indices: 8444761--8444816 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
8444751 AAACCTTTAC
* *
8444761 AAACCTTTGCAAATTTTG
1 AAACCTTTGTAAATCTTG
8444779 AAACCTTTGTAAATCTTG
1 AAACCTTTGTAAATCTTG
*
8444797 AAACCATTGTGAAA-CTTG
1 AAACCTTTGT-AAATCTTG
8444815 AA
1 AA
8444817 TCATTTGATG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
18 31 0.91
19 3 0.09
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (18 bp):
AAACCTTTGTAAATCTTG
Found at i:8445222 original size:17 final size:17
Alignment explanation
Indices: 8445184--8445222 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
8445174 AACCCAAAAA
*
8445184 TTTTTAATTTAATTTTG
1 TTTTTAATTTAATTTGG
* *
8445201 ATTTTAATTTGATTTGG
1 TTTTTAATTTAATTTGG
8445218 TTTTT
1 TTTTT
8445223 TTTTTGTTTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (17 bp):
TTTTTAATTTAATTTGG
Found at i:8446330 original size:18 final size:18
Alignment explanation
Indices: 8446303--8446367 Score: 96
Period size: 18 Copynumber: 3.7 Consensus size: 18
8446293 TTTGGTTTTA
*
8446303 TTTTAGATTATTTGGGTT
1 TTTTATATTATTTGGGTT
*
8446321 TTTTATATTATTTAGGTT
1 TTTTATATTATTTGGGTT
8446339 TTTTATATTATTTGGGTT
1 TTTTATATTATTTGGGTT
*
8446357 ATTTAT-TTATT
1 TTTTATATTATT
8446368 ATTTTAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
17 5 0.12
18 38 0.88
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.66
Consensus pattern (18 bp):
TTTTATATTATTTGGGTT
Found at i:8446621 original size:35 final size:36
Alignment explanation
Indices: 8446581--8446661 Score: 92
Period size: 38 Copynumber: 2.2 Consensus size: 36
8446571 TGTGAAAAAT
* * *
8446581 ATAATTTTCATA-AAATCTTACCAATATATTGGAGG
1 ATAATTTTAATACAAATCTTACCAACATATTGGAAG
*
8446616 ATAATTTTTAATAGCAAATCTTATCAACATATTGGAAG
1 ATAA-TTTTAATA-CAAATCTTACCAACATATTGGAAG
*
8446654 ATAGTTTT
1 ATAATTTT
8446662 GAAAATAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
35 4 0.11
36 7 0.18
37 4 0.11
38 23 0.61
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.40
Consensus pattern (36 bp):
ATAATTTTAATACAAATCTTACCAACATATTGGAAG
Found at i:8449943 original size:10 final size:10
Alignment explanation
Indices: 8449930--8449954 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8449920 ATTTCCTTTT
8449930 TTGGCCTTAA
1 TTGGCCTTAA
8449940 TTGGCCTTAA
1 TTGGCCTTAA
8449950 TTGGC
1 TTGGC
8449955 TTTGTTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.40
Consensus pattern (10 bp):
TTGGCCTTAA
Found at i:8462708 original size:29 final size:28
Alignment explanation
Indices: 8462646--8462708 Score: 65
Period size: 28 Copynumber: 2.2 Consensus size: 28
8462636 TTATTGAGCC
* * *
8462646 TAAAATATTAATTTTTTAAATTAATGTG
1 TAAAATAATAATTTTTTAAATTAATATA
*
8462674 TCAAATAATAATTTTATT-AATATAATATA
1 TAAAATAATAATTTT-TTAAAT-TAATATA
8462703 TAAAAT
1 TAAAAT
8462709 GAAATTAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 16 0.57
29 12 0.43
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (28 bp):
TAAAATAATAATTTTTTAAATTAATATA
Found at i:8463037 original size:15 final size:15
Alignment explanation
Indices: 8463014--8463055 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
8463004 AAATTAATTT
*
8463014 AAATTAAAAAAATAA
1 AAATAAAAAAAATAA
* *
8463029 AAATAAAAATAATGA
1 AAATAAAAAAAATAA
8463044 AAATAAAAAAAA
1 AAATAAAAAAAA
8463056 AGGGAAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (15 bp):
AAATAAAAAAAATAA
Found at i:8463186 original size:22 final size:22
Alignment explanation
Indices: 8463162--8463202 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8463152 TAAAAAATAA
8463162 AAAAAAATAAA-GAAGAAAAGG
1 AAAAAAATAAACGAAGAAAAGG
*
8463183 AAAAAAATAAACTAAGAAAA
1 AAAAAAATAAACGAAGAAAA
8463203 AAAAGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.78, C:0.02, G:0.12, T:0.07
Consensus pattern (22 bp):
AAAAAAATAAACGAAGAAAAGG
Found at i:8463209 original size:31 final size:31
Alignment explanation
Indices: 8463153--8463220 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
8463143 TTTATTAATT
*
8463153 AAAAAATAAAAAAAAATAAAGAAGAAAAGGA
1 AAAAAATAAAAAAAAATAAAGAAGAAAAAGA
* *
8463184 AAAAAATAAACTAAGAAA-AAA-AAGAAAAAGT
1 AAAAAATAAA--AAAAAATAAAGAAGAAAAAGA
8463215 AAAAAA
1 AAAAAA
8463221 GATATTATCG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 24 0.75
32 3 0.09
33 5 0.16
ACGTcount: A:0.81, C:0.01, G:0.10, T:0.07
Consensus pattern (31 bp):
AAAAAATAAAAAAAAATAAAGAAGAAAAAGA
Found at i:8463211 original size:22 final size:20
Alignment explanation
Indices: 8463160--8463211 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
8463150 ATTAAAAAAT
8463160 AAAAAAAAATAAAGAAGAAA
1 AAAAAAAAATAAAGAAGAAA
* *
8463180 AGGAAAAAAATAAACTAAGAAA
1 A-AAAAAAAATAAA-GAAGAAA
8463202 AAAAAGAAAA
1 AAAAA-AAAA
8463212 AGTAAAAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 1 0.04
21 14 0.54
22 11 0.42
ACGTcount: A:0.81, C:0.02, G:0.12, T:0.06
Consensus pattern (20 bp):
AAAAAAAAATAAAGAAGAAA
Found at i:8464070 original size:17 final size:17
Alignment explanation
Indices: 8464022--8464076 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
8464012 TATTAAATAT
8464022 TAAAAAAAGAAAGAAA-A
1 TAAAAAAAGAAA-AAAGA
* * *
8464039 TATAAATATAAAAAAGA
1 TAAAAAAAGAAAAAAGA
8464056 TAAAAAAAGAAAAAAGA
1 TAAAAAAAGAAAAAAGA
8464073 -AAAA
1 TAAAA
8464077 TGAAGCAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
16 7 0.23
17 24 0.77
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (17 bp):
TAAAAAAAGAAAAAAGA
Found at i:8464320 original size:14 final size:14
Alignment explanation
Indices: 8464303--8464348 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
8464293 AAAAAAGTTT
*
8464303 AAAAAGAAAAAGCA
1 AAAAAGAAAAAGAA
8464317 AAAAAGAAAAA-AA
1 AAAAAGAAAAAGAA
8464330 GAAAAAG-AAAAGAA
1 -AAAAAGAAAAAGAA
8464344 AAAAA
1 AAAAA
8464349 TGGATTATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 10 0.34
14 19 0.66
ACGTcount: A:0.85, C:0.02, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAGAA
Found at i:8464328 original size:22 final size:19
Alignment explanation
Indices: 8464303--8464348 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 19
8464293 AAAAAAGTTT
8464303 AAAAAGAAAAAGCAAAAAAGAA
1 AAAAAGAAAAAG---AAAAGAA
8464325 AAAAAGAAAAAGAAAAGAA
1 AAAAAGAAAAAGAAAAGAA
8464344 AAAAA
1 AAAAA
8464349 TGGATTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.50
22 12 0.50
ACGTcount: A:0.85, C:0.02, G:0.13, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAAAGAAAAGAA
Found at i:8468792 original size:86 final size:86
Alignment explanation
Indices: 8468647--8468837 Score: 255
Period size: 86 Copynumber: 2.2 Consensus size: 86
8468637 AGCAATCAAA
* *
8468647 AAGATATTTTCATAATTATGTTTAAAAGGTACTATAGTAATTTTGGTCAATTATAATATGA-GTG
1 AAGATATTTTCATAATTATGGTTAAAAGGTACTATAGTAATTTTGGTAAATTATAATATGATG-G
* * * *
8468711 ATATTTTCGTATTTATGTTAAG
65 ACATTTTCATAATTATGATAAG
*
8468733 AAGATATTTTCATAATTATGGTT-AGAGGATA-TCATAGTAATTTTGGTAAATTATAATATGATG
1 AAGATATTTTCATAATTATGGTTAAAAGG-TACT-ATAGTAATTTTGGTAAATTATAATATGATG
8468796 GACATTTTCATAATTATGATAAG
64 GACATTTTCATAATTATGATAAG
8468819 -AGTATATTTTCATAATTAT
1 AAG-ATATTTTCATAATTAT
8468838 TGTTGTAAAG
Statistics
Matches: 94, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
85 7 0.07
86 86 0.91
87 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (86 bp):
AAGATATTTTCATAATTATGGTTAAAAGGTACTATAGTAATTTTGGTAAATTATAATATGATGGA
CATTTTCATAATTATGATAAG
Found at i:8469263 original size:26 final size:25
Alignment explanation
Indices: 8469225--8469290 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
8469215 TATTATAATA
**
8469225 ATTTTTATCAATTATAATATAAGCGGT
1 ATTTTTAT-AATTATAATA-AAAAGGT
* *
8469252 ATTTTTATAATTAGAGTAAAAAGGT
1 ATTTTTATAATTATAATAAAAAGGT
*
8469277 ATTTTTGTAATTAT
1 ATTTTTATAATTAT
8469291 GGTTAGAGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
25 17 0.52
26 8 0.24
27 8 0.24
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (25 bp):
ATTTTTATAATTATAATAAAAAGGT
Found at i:8469263 original size:112 final size:110
Alignment explanation
Indices: 8469060--8469264 Score: 256
Period size: 112 Copynumber: 1.8 Consensus size: 110
8469050 AATGAGTAAT
* * *
8469060 TATGAAACAATCAAAGGGGTATTTTTGTAATTATGCTTAGAGGGTATACAATAATTTTGGCCAAT
1 TATGAAACAATCAAAAGGGTATTTTTATAATTATGCTTAGAGGGTATACAATAATTTTGACCAAT
*
8469125 TATAATATGAAGGTTATTTTCTTAATTATGCTTGGAAAGTCATAA
66 TATAATATGAAGGGTATTTTCTTAATTATGCTTGGAAAGTCATAA
* * * *
8469170 TATG-AACAATCAAAAAGGGTCTTTTTTATAATTATTG-TTAGAGGGTATTATAATAATTTTTAT
1 TATGAAACAATC-AAAAGGGT-ATTTTTATAATTA-TGCTTAGAGGGTA-TACAATAATTTTGAC
8469233 CAATTATAATAT-AAGCGGTATTTT-TATAATTA
62 CAATTATAATATGAAG-GGTATTTTCT-TAATTA
8469265 GAGTAAAAAG
Statistics
Matches: 81, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
109 7 0.09
110 11 0.14
111 25 0.31
112 38 0.47
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.41
Consensus pattern (110 bp):
TATGAAACAATCAAAAGGGTATTTTTATAATTATGCTTAGAGGGTATACAATAATTTTGACCAAT
TATAATATGAAGGGTATTTTCTTAATTATGCTTGGAAAGTCATAA
Found at i:8469480 original size:26 final size:27
Alignment explanation
Indices: 8469433--8469490 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 27
8469423 GCATTATAGT
* *
8469433 AATTTTGGCTAATTATAGTAAGATGGA
1 AATTTTAGCTAATTATAGTAAGAGGGA
* *
8469460 AATTTTAG-TAATTGTATTAAGAGGGA
1 AATTTTAGCTAATTATAGTAAGAGGGA
*
8469486 CATTT
1 AATTT
8469491 CAATAATTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.40
Consensus pattern (27 bp):
AATTTTAGCTAATTATAGTAAGAGGGA
Found at i:8470349 original size:14 final size:14
Alignment explanation
Indices: 8470330--8470356 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8470320 AACAAGTAAA
8470330 AACAACACAAAAAT
1 AACAACACAAAAAT
8470344 AACAACACAAAAA
1 AACAACACAAAAA
8470357 GAAAAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.22, G:0.00, T:0.04
Consensus pattern (14 bp):
AACAACACAAAAAT
Found at i:8471739 original size:167 final size:167
Alignment explanation
Indices: 8471508--8471818 Score: 424
Period size: 167 Copynumber: 1.9 Consensus size: 167
8471498 TATATATATA
* * *
8471508 TATATATATATTATAACTAATATTTTAGAAGGCTAGGGTTGAGGGTCCAATTCACTTGTTTTGAT
1 TATATATATATTATAACTAATATTTCAGAAGGCTAAGGTTGAGGGTCCAATTCACTTCTTTTGAT
* * * * * *
8471573 GTTCTTCGTATGTATAATATAACAAAAGATCCGATTAATGGTGTTTAGTTAGTTAAATTTTTTGG
66 ATTCTTCGTATGCATAACATAACAAAAGATCCGATTAATAGTGTTAAGTTAGTTAAAGTTTTTGG
8471638 ACTTTATTAACAAGCATATCGGTTGTAGTTTTTAATG
131 ACTTTATTAACAAGCATATCGGTTGTAGTTTTTAATG
* * * * * * * *
8471675 TATATATATTTTATAACTCATATTTCATAATGCTAAGGTTGGGGGTCTAATTGATTTCTTTTGAT
1 TATATATATATTATAACTAATATTTCAGAAGGCTAAGGTTGAGGGTCCAATTCACTTCTTTTGAT
* * * *
8471740 ATTCTTTGTATGCATAGCATAACAAAAGATCCGATTATTATTGTTAAGTTAGTTAAAGTTTTTGG
66 ATTCTTCGTATGCATAACATAACAAAAGATCCGATTAATAGTGTTAAGTTAGTTAAAGTTTTTGG
*
8471805 ATTTTATTAACAAG
131 ACTTTATTAACAAG
8471819 TGTACCAATT
Statistics
Matches: 122, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
167 122 1.00
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (167 bp):
TATATATATATTATAACTAATATTTCAGAAGGCTAAGGTTGAGGGTCCAATTCACTTCTTTTGAT
ATTCTTCGTATGCATAACATAACAAAAGATCCGATTAATAGTGTTAAGTTAGTTAAAGTTTTTGG
ACTTTATTAACAAGCATATCGGTTGTAGTTTTTAATG
Found at i:8475870 original size:9 final size:10
Alignment explanation
Indices: 8475858--8475900 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
8475848 GTGGATTTTT
8475858 TTTATAATT-
1 TTTATAATTA
*
8475867 TTTAAAATTA
1 TTTATAATTA
*
8475877 TTTTTAATATA
1 TTTATAAT-TA
8475888 TTTATAATTA
1 TTTATAATTA
8475898 TTT
1 TTT
8475901 TTACTATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
9 8 0.29
10 11 0.39
11 9 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TTTATAATTA
Found at i:8475881 original size:21 final size:21
Alignment explanation
Indices: 8475867--8475908 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8475857 TTTTATAATT
8475867 TTTAAAATTATTTTTAATATA
1 TTTAAAATTATTTTTAATATA
* *
8475888 TTTATAATTATTTTTACTATA
1 TTTAAAATTATTTTTAATATA
8475909 AAATAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTAAAATTATTTTTAATATA
Found at i:8476916 original size:17 final size:18
Alignment explanation
Indices: 8476891--8476928 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
8476881 TTGTGTTTTT
*
8476891 AAATTTAAAAAATTA-AA
1 AAATCTAAAAAATTATAA
*
8476908 AAATCTAAAGAATTATAA
1 AAATCTAAAAAATTATAA
8476926 AAA
1 AAA
8476929 AATTTATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (18 bp):
AAATCTAAAAAATTATAA
Found at i:8478258 original size:12 final size:11
Alignment explanation
Indices: 8478241--8478304 Score: 56
Period size: 12 Copynumber: 5.5 Consensus size: 11
8478231 CAACTCATTT
8478241 TTTTTTCTTTTA
1 TTTTTT-TTTTA
* *
8478253 TTTTTTTCTCA
1 TTTTTTTTTTA
*
8478264 TTTTCTTTTTA
1 TTTTTTTTTTA
8478275 GTTTTATTTTTTA
1 -TTTT-TTTTTTA
*
8478288 TTGATTTTTTTA
1 TT-TTTTTTTTA
8478300 TTTTT
1 TTTTT
8478305 ATTTGCATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
11 13 0.32
12 21 0.51
13 7 0.17
ACGTcount: A:0.11, C:0.06, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:8478272 original size:26 final size:28
Alignment explanation
Indices: 8478234--8478286 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
8478224 AAGTTGTCAA
8478234 CTCATTTT-TTTTT-CTTTTATTTTTTT
1 CTCATTTTCTTTTTACTTTTATTTTTTT
*
8478260 CTCATTTTCTTTTTAGTTTTATTTTTT
1 CTCATTTTCTTTTTACTTTTATTTTTT
8478287 ATTGATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 8 0.33
27 5 0.21
28 11 0.46
ACGTcount: A:0.09, C:0.11, G:0.02, T:0.77
Consensus pattern (28 bp):
CTCATTTTCTTTTTACTTTTATTTTTTT
Found at i:8478281 original size:28 final size:26
Alignment explanation
Indices: 8478234--8478308 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 26
8478224 AAGTTGTCAA
8478234 CTCATTTTTTTTTCTTTTATTTTTTT
1 CTCATTTTTTTTTCTTTTATTTTTTT
*
8478260 CTCATTTTCTTTTTAGTTTTATTTTTTAT
1 CTCATTTT-TTTTT-CTTTTATTTTTT-T
* *
8478289 -TGATTTTTTTAT-TTTTATTT
1 CTCATTTTTTTTTCTTTTATTT
8478309 GCATAAATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
25 8 0.19
26 8 0.19
27 9 0.21
28 17 0.40
29 1 0.02
ACGTcount: A:0.12, C:0.08, G:0.03, T:0.77
Consensus pattern (26 bp):
CTCATTTTTTTTTCTTTTATTTTTTT
Found at i:8480361 original size:34 final size:33
Alignment explanation
Indices: 8480312--8480386 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 33
8480302 TTTGAGTTTA
* *
8480312 AAATTTTTTTGGATTTAGAGAAAGAAAAAGCGT
1 AAATTTTTTTAGATTTAGAGAAAGAAAAAGAGT
*
8480345 AAATTTTTTCTAGATTTAGAGAGAGAAAAAGAGT
1 AAATTTTTT-TAGATTTAGAGAAAGAAAAAGAGT
8480379 AAATTTTT
1 AAATTTTT
8480387 GAAGAAGAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 9 0.24
34 29 0.76
ACGTcount: A:0.43, C:0.03, G:0.19, T:0.36
Consensus pattern (33 bp):
AAATTTTTTTAGATTTAGAGAAAGAAAAAGAGT
Found at i:8481050 original size:2 final size:2
Alignment explanation
Indices: 8481043--8481073 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8481033 AAGAGAAATA
*
8481043 AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8481074 GGAAGCTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:8481231 original size:29 final size:29
Alignment explanation
Indices: 8481160--8481218 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
8481150 TTAACGACTC
* *
8481160 TATGATCATGGAAATAAAAATCTCAATTT
1 TATGATTATGAAAATAAAAATCTCAATTT
8481189 TATGATTATGAAAATAAAAATCTCAATTT
1 TATGATTATGAAAATAAAAATCTCAATTT
8481218 T
1 T
8481219 CATTTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.37
Consensus pattern (29 bp):
TATGATTATGAAAATAAAAATCTCAATTT
Found at i:8481376 original size:19 final size:19
Alignment explanation
Indices: 8481352--8481389 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8481342 AACTCAATGC
*
8481352 GCTTCATTTGGGTTAAAGA
1 GCTTCATTTAGGTTAAAGA
*
8481371 GCTTCATTTATGTTAAAGA
1 GCTTCATTTAGGTTAAAGA
8481390 TGTCACACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (19 bp):
GCTTCATTTAGGTTAAAGA
Found at i:8481412 original size:2 final size:2
Alignment explanation
Indices: 8481399--8481436 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
8481389 ATGTCACACT
*
8481399 TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8481437 AGTGTGACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8500868 original size:12 final size:11
Alignment explanation
Indices: 8500832--8500883 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
8500822 AAATGAAAAG
8500832 AAATAAAAA-A
1 AAATAAAAATA
* *
8500842 AAGTAAAAAAA
1 AAATAAAAATA
*
8500853 AAATACAAATA
1 AAATAAAAATA
8500864 CAAATTAAAAATA
1 -AAA-TAAAAATA
8500877 AAATAAA
1 AAATAAA
8500884 TAAATAATGA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
10 8 0.24
11 13 0.38
12 6 0.18
13 7 0.21
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:8502163 original size:4 final size:4
Alignment explanation
Indices: 8502154--8502248 Score: 55
Period size: 4 Copynumber: 23.8 Consensus size: 4
8502144 TTCGTGGTTT
* * * * * *
8502154 TATA TATA TATA TATA TATA TGTA TGTA TAAA TGTA TACA TATA TATC
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * * * * * * *
8502202 TATA CATT TATA CACA TACA TGTA TATG TATA TACA TATA TACA TAT
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TAT
8502249 GGGATGGATT
Statistics
Matches: 65, Mismatches: 26, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
4 65 1.00
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.43
Consensus pattern (4 bp):
TATA
Found at i:8502165 original size:6 final size:6
Alignment explanation
Indices: 8502154--8502248 Score: 55
Period size: 6 Copynumber: 15.8 Consensus size: 6
8502144 TTCGTGGTTT
* * * * * *
8502154 TATATA TATATA TATATA TATGTA TGTATA AATGTA TACATA TATATC
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
* * * * * * * * *
8502202 TATACA TTTATA CACATA CATGTA TATGTA TATACA TATATA CATAT
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATAT
8502249 GGGATGGATT
Statistics
Matches: 64, Mismatches: 25, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.43
Consensus pattern (6 bp):
TATATA
Found at i:8502669 original size:2 final size:2
Alignment explanation
Indices: 8502662--8502686 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8502652 TAAATTGATT
8502662 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8502687 CTCAAGTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8505332 original size:2 final size:2
Alignment explanation
Indices: 8505325--8505351 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8505315 TTCATGGTAC
8505325 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8505352 CCTTTTCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8507093 original size:24 final size:24
Alignment explanation
Indices: 8507065--8507121 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
8507055 CAAGTTCAAC
8507065 CTCTAATTATTTTTTTCACAAATG
1 CTCTAATTATTTTTTTCACAAATG
*
8507089 CTCTAATTATTTTTTTCACAAGTG
1 CTCTAATTATTTTTTTCACAAATG
8507113 CTCTAATTA
1 CTCTAATTA
8507122 ATTAAAGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.28, C:0.18, G:0.05, T:0.49
Consensus pattern (24 bp):
CTCTAATTATTTTTTTCACAAATG
Found at i:8507274 original size:18 final size:17
Alignment explanation
Indices: 8507247--8507285 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
8507237 TTAAGAAAAA
* *
8507247 AAAAATTGAAGAAAACTG
1 AAAAACTGAA-AAAAATG
8507265 AAAAACTGAAAAAAATG
1 AAAAACTGAAAAAAATG
8507282 AAAA
1 AAAA
8507286 TTAGCTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.69, C:0.05, G:0.13, T:0.13
Consensus pattern (17 bp):
AAAAACTGAAAAAAATG
Found at i:8508941 original size:21 final size:21
Alignment explanation
Indices: 8508893--8508950 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 21
8508883 AATAGTAATG
* * *
8508893 ATAATAAAATTAATTATTATA
1 ATAATGAAATTAAATACTATA
*
8508914 ATTATGAAATTAAATACTATA
1 ATAATGAAATTAAATACTATA
* **
8508935 GTAATGAGGTTAAATA
1 ATAATGAAATTAAATA
8508951 TTATCTTAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.38
Consensus pattern (21 bp):
ATAATGAAATTAAATACTATA
Found at i:8513852 original size:15 final size:15
Alignment explanation
Indices: 8513832--8513860 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8513822 CTTTTTCCTA
8513832 AAAAAAAAAAGAAAG
1 AAAAAAAAAAGAAAG
8513847 AAAAAAAAAAGAAA
1 AAAAAAAAAAGAAA
8513861 AAGAGAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAGAAAG
Found at i:8513861 original size:21 final size:20
Alignment explanation
Indices: 8513831--8513869 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8513821 TCTTTTTCCT
8513831 AAAAAAAAAAAGAAAGAAAA
1 AAAAAAAAAAAGAAAGAAAA
*
8513851 AAAAAAGAAAAAGAGAGAA
1 AAAAAA-AAAAAGAAAGAA
8513870 TTTTAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAAGAAAGAAAA
Found at i:8513863 original size:17 final size:16
Alignment explanation
Indices: 8513831--8513864 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8513821 TCTTTTTCCT
*
8513831 AAAAAAAAAAAGAAAG
1 AAAAAAAAAAAAAAAG
8513847 AAAAAAAAAAGAAAAAG
1 AAAAAAAAAA-AAAAAG
8513864 A
1 A
8513865 GAGAATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAAAAG
Found at i:8519258 original size:10 final size:10
Alignment explanation
Indices: 8519243--8519267 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8519233 TCTAGTGTTT
8519243 AAAAAAATAA
1 AAAAAAATAA
8519253 AAAAAAATAA
1 AAAAAAATAA
8519263 AAAAA
1 AAAAA
8519268 GCAAAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:8519557 original size:13 final size:13
Alignment explanation
Indices: 8519539--8519563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8519529 AATGTCTCTA
8519539 AAAGAAAAAAAGC
1 AAAGAAAAAAAGC
8519552 AAAGAAAAAAAG
1 AAAGAAAAAAAG
8519564 ACACATAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAGC
Found at i:8520499 original size:88 final size:87
Alignment explanation
Indices: 8520398--8520589 Score: 208
Period size: 87 Copynumber: 2.2 Consensus size: 87
8520388 TATAATTTAC
* * * ** *
8520398 ATGTGCATCATGAGAAAGATATTTGATCTACATGTTGCAAAAAAATAAAAAAT-ACATTTGCATT
1 ATGTGCATCATGAGAAAAACACTTGATCTACATACTG--AAAAAATAAAAAATGACATTCGCATT
8520462 TACATCACTTGCATTCGAATTGAT
64 TACATCACTTGCATTCGAATTGAT
* * * *
8520486 ATGTGCATTATGAGAAAAACACTTGATCTACATACTGTAAAAATAAAAAATGACATTCGTATTTG
1 ATGTGCATCATGAGAAAAACACTTGATCTACATACTGAAAAAATAAAAAATGACATTCGCATTTA
** * * *
8520551 CATCACTAACATTTGCACTTG-C
66 CATCACTTGCATTCG-AATTGAT
8520573 ATGTGCATCATGAGAAA
1 ATGTGCATCATGAGAAA
8520590 GACGTTAGCA
Statistics
Matches: 86, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
86 13 0.15
87 38 0.44
88 35 0.41
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (87 bp):
ATGTGCATCATGAGAAAAACACTTGATCTACATACTGAAAAAATAAAAAATGACATTCGCATTTA
CATCACTTGCATTCGAATTGAT
Found at i:8520586 original size:87 final size:87
Alignment explanation
Indices: 8520391--8520589 Score: 213
Period size: 88 Copynumber: 2.3 Consensus size: 87
8520381 GTATTTGTAT
* * * * **
8520391 AATTTACATGTGCATCATGAGAAAGATATTTGATCTACATGTTGCAAAAAAATAAAAAATACATT
1 AATTGACATGTGCATCATGAGAAAAACACTTGATCTACATACTG-AAAAAAATAAAAAATACATT
* **
8520456 TGCATTTACATCACTTGCATTCG
65 CGCATTTACATCACTAACATTCG
* * *
8520479 AATTGATATGTGCATTATGAGAAAAACACTTGATCTACATACTG-TAAAAATAAAAAATGACATT
1 AATTGACATGTGCATCATGAGAAAAACACTTGATCTACATACTGAAAAAAATAAAAAAT-ACATT
* * *
8520543 CGTATTTGCATCACTAACATTTG
65 CGCATTTACATCACTAACATTCG
*
8520566 CACTTG-CATGTGCATCATGAGAAA
1 -AATTGACATGTGCATCATGAGAAA
8520590 GACGTTAGCA
Statistics
Matches: 91, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
86 13 0.14
87 38 0.42
88 40 0.44
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.32
Consensus pattern (87 bp):
AATTGACATGTGCATCATGAGAAAAACACTTGATCTACATACTGAAAAAAATAAAAAATACATTC
GCATTTACATCACTAACATTCG
Found at i:8520890 original size:15 final size:16
Alignment explanation
Indices: 8520872--8520909 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
8520862 TTTCTATACT
8520872 AAAAAAAAAGAA-AGA
1 AAAAAAAAAGAAGAGA
*
8520887 AAAAAAAAATAAGAGA
1 AAAAAAAAAGAAGAGA
8520903 AGAAAAA
1 A-AAAAA
8520910 TGAGAAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 11 0.55
16 4 0.20
17 5 0.25
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (16 bp):
AAAAAAAAAGAAGAGA
Found at i:8520891 original size:16 final size:19
Alignment explanation
Indices: 8520872--8520909 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8520862 TTTCTATACT
8520872 AAAAAAA-AAGA-AAGAAA
1 AAAAAAATAAGAGAAGAAA
8520889 AAAAAAATAAGAGAAGAAA
1 AAAAAAATAAGAGAAGAAA
8520908 AA
1 AA
8520910 TGAGAAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 4 0.21
19 8 0.42
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (19 bp):
AAAAAAATAAGAGAAGAAA
Found at i:8521063 original size:21 final size:21
Alignment explanation
Indices: 8521025--8521065 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8521015 AAAGGAAACA
**
8521025 ATTTGAAAAAAATGAAAAAAT
1 ATTTGAAAAAAACAAAAAAAT
*
8521046 ATTTTAAAAAAACAAAAAAA
1 ATTTGAAAAAAACAAAAAAA
8521066 AGAAAAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (21 bp):
ATTTGAAAAAAACAAAAAAAT
Found at i:8521071 original size:14 final size:14
Alignment explanation
Indices: 8521051--8521110 Score: 59
Period size: 14 Copynumber: 3.9 Consensus size: 14
8521041 AAAATATTTT
8521051 AAAAAAACAAAAAA
1 AAAAAAACAAAAAA
8521065 AAGAAAAA-AAAAAGGA
1 AA-AAAAACAAAAA--A
8521081 GAAAAAATAGCAAAAAA
1 -AAAAAA-A-CAAAAAA
8521098 AAAAAAACAAAAA
1 AAAAAAACAAAAA
8521111 GTGAGAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
14 13 0.33
15 6 0.15
16 11 0.28
17 4 0.10
19 5 0.13
ACGTcount: A:0.85, C:0.05, G:0.08, T:0.02
Consensus pattern (14 bp):
AAAAAAACAAAAAA
Found at i:8521405 original size:100 final size:100
Alignment explanation
Indices: 8521211--8521405 Score: 284
Period size: 100 Copynumber: 1.9 Consensus size: 100
8521201 TGAAGAATTG
* *
8521211 AAAGAAAAATGATCTACAAAAGGCAGATGGGTTATTGAAAAAATGAATGAAAAAAGATGAGATAA
1 AAAGAAAAATAATCTACAAAAGGAAGATGGGTTATTGAAAAAATGAATGAAAAAAGATGAGATAA
* **
8521276 TATATAAGATAAAACTTAAGTTCAATCAAAAGTTA
66 GATATAAGATAAAACTTAAGCCCAATCAAAAGTTA
*
8521311 AAAGAAAAATAATCTACAAAAGGAAGA-GTGGTTGTTGAAAAAATGAATGAAAAAAGATGAGATA
1 AAAGAAAAATAATCTACAAAAGGAAGATG-GGTTATTGAAAAAATGAATGAAAAAAGATGAGATA
* * * *
8521375 CGATATAAGATAAGATTTAAGCCCAGTCAAA
65 AGATATAAGATAAAACTTAAGCCCAATCAAA
8521406 CTAACATCCA
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 1 0.01
100 83 0.99
ACGTcount: A:0.53, C:0.07, G:0.18, T:0.22
Consensus pattern (100 bp):
AAAGAAAAATAATCTACAAAAGGAAGATGGGTTATTGAAAAAATGAATGAAAAAAGATGAGATAA
GATATAAGATAAAACTTAAGCCCAATCAAAAGTTA
Found at i:8521497 original size:22 final size:22
Alignment explanation
Indices: 8521450--8521498 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
8521440 GCCACTTAAG
**
8521450 ATAATCTCTAAGACTTTTGAGC
1 ATAATCTCTAAGACTTCCGAGC
*
8521472 ATAATCTCTAAGAGC-TCCGAGT
1 ATAATCTCTAAGA-CTTCCGAGC
8521494 ATAAT
1 ATAAT
8521499 TTTGAAGACC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (22 bp):
ATAATCTCTAAGACTTCCGAGC
Found at i:8521616 original size:22 final size:21
Alignment explanation
Indices: 8521591--8521658 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 21
8521581 TTATAAGATC
*
8521591 TTCAAGCATAATCTCCAAGACT
1 TTCAAGCATAAT-TTCAAGACT
* *
8521613 TTCAGGCATAATTTTTAAGA-T
1 TTCAAGCATAA-TTTCAAGACT
8521634 CTTCAAGCATAAATTTCAAGACT
1 -TTCAAGCAT-AATTTCAAGACT
8521657 TT
1 TT
8521659 TGGGCAAAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
21 1 0.03
22 32 0.86
23 4 0.11
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
TTCAAGCATAATTTCAAGACT
Found at i:8521750 original size:148 final size:148
Alignment explanation
Indices: 8521516--8521793 Score: 335
Period size: 148 Copynumber: 1.9 Consensus size: 148
8521506 ACCTCCGGAT
* * * * *
8521516 AAAATATTTTAAATTTTTAAAGTTTTAATGCCTTTTATTGGAGGAGAATTCATAGATGTTAAGAT
1 AAAACATTTTAAATTCTCAAAGTTTCAATGCCTTTTATTGGAGGAGAATTCATAGATGTCAAGAT
* * * *
8521581 TTATAAGATCTTCAAGCATAATCTCCAAGACTTTCAGGCATAATTTTTAAGATCTTCAAGCATAA
66 TTATAAAATCTTCAAGCATAATCTCCAAGACTTTCAGGCATAATCTCTAAGACCTTCAAGCATAA
8521646 ATTTCAAGACTTTTGGGC
131 ATTTCAAGACTTTTGGGC
* * * *
8521664 AAAACATTTTAAATTCTCAAAGTTTCAATGTCTTTTATTGGAGGAGCATTCATAGATGTCCATAT
1 AAAACATTTTAAATTCTCAAAGTTTCAATGCCTTTTATTGGAGGAGAATTCATAGATGTCAAGAT
* * * * * * * *
8521729 TTGTAAAACCTCTT-GA-TATAATCTCTAAGAGTTTTAGGTATAATCTCTAAGACCTTCAGGCAT
66 TTATAAAA--TCTTCAAGCATAATCTCCAAGACTTTCAGGCATAATCTCTAAGACCTTCAAGCAT
8521792 AA
129 AA
8521794 TCTTTAAAAC
Statistics
Matches: 107, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
148 102 0.95
149 1 0.01
150 4 0.04
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (148 bp):
AAAACATTTTAAATTCTCAAAGTTTCAATGCCTTTTATTGGAGGAGAATTCATAGATGTCAAGAT
TTATAAAATCTTCAAGCATAATCTCCAAGACTTTCAGGCATAATCTCTAAGACCTTCAAGCATAA
ATTTCAAGACTTTTGGGC
Found at i:8521793 original size:22 final size:22
Alignment explanation
Indices: 8521746--8521815 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
8521736 ACCTCTTGAT
** * *
8521746 ATAATCTCTAAGAGTTTTAGGT
1 ATAATCTCTAAGAACTTCAGGC
*
8521768 ATAATCTCTAAGACCTTCAGGC
1 ATAATCTCTAAGAACTTCAGGC
* *
8521790 ATAATCTTTAA-AACATCAGGC
1 ATAATCTCTAAGAACTTCAGGC
8521811 ATAAT
1 ATAAT
8521816 TTTCAAGACC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
21 13 0.32
22 28 0.68
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (22 bp):
ATAATCTCTAAGAACTTCAGGC
Found at i:8523503 original size:27 final size:27
Alignment explanation
Indices: 8523472--8523524 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
8523462 GCCCCACCAC
* *
8523472 AATCCCTGTACCCATCACCTCACCAAT
1 AATCCCCGTACCCATCACCGCACCAAT
*
8523499 AATCCCCGTATCCATCACCGCACCAA
1 AATCCCCGTACCCATCACCGCACCAA
8523525 CCCAAGCTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.45, G:0.06, T:0.19
Consensus pattern (27 bp):
AATCCCCGTACCCATCACCGCACCAAT
Found at i:8523653 original size:15 final size:15
Alignment explanation
Indices: 8523632--8523665 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8523622 AAAAGAAAAA
8523632 AAAACCAAACCAAAC
1 AAAACCAAACCAAAC
* *
8523647 CAAACCAAACAAAAC
1 AAAACCAAACCAAAC
8523662 AAAA
1 AAAA
8523666 ATCAAAGAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAACCAAACCAAAC
Found at i:8524523 original size:28 final size:27
Alignment explanation
Indices: 8524471--8524523 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
8524461 TTTATAATTT
**
8524471 ATATTTAATTATTTTAAATTTTTAATG
1 ATATTTAATTATTTTAAATGGTTAATG
8524498 ATATTT-ATTATATATTAAATGGTTAA
1 ATATTTAATTAT-T-TTAAATGGTTAA
8524524 GATTGTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 5 0.23
27 7 0.32
28 10 0.45
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.55
Consensus pattern (27 bp):
ATATTTAATTATTTTAAATGGTTAATG
Found at i:8527759 original size:21 final size:21
Alignment explanation
Indices: 8527707--8527748 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8527697 TGCATTATAA
8527707 GAAAGATAAATATTTTTTTTT
1 GAAAGATAAATATTTTTTTTT
8527728 GAAAGATAAATATTTTTTTTT
1 GAAAGATAAATATTTTTTTTT
8527749 ATAAGAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (21 bp):
GAAAGATAAATATTTTTTTTT
Found at i:8532526 original size:3 final size:3
Alignment explanation
Indices: 8532520--8532554 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
8532510 TGTTATAATT
8532520 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8532555 TACTCATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8537836 original size:19 final size:18
Alignment explanation
Indices: 8537799--8537888 Score: 69
Period size: 19 Copynumber: 4.9 Consensus size: 18
8537789 TTCACATTTA
8537799 TAAAATTAATAAATAATT
1 TAAAATTAATAAATAATT
* *
8537817 TAAAATTTACTAAATTATTT
1 TAAAA-TTAATAAA-TAATT
**
8537837 TAATGTTAA-ATAATAATT
1 TAAAATTAATA-AATAATT
*
8537855 T--TATTAATAAATAATT
1 TAAAATTAATAAATAATT
*
8537871 AAAAATTAATGAAATAAT
1 TAAAATTAAT-AAATAAT
8537889 AATACATCAA
Statistics
Matches: 56, Mismatches: 9, Indels: 13
0.72 0.12 0.17
Matches are distributed among these distances:
16 12 0.21
17 1 0.02
18 17 0.30
19 19 0.34
20 7 0.12
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.42
Consensus pattern (18 bp):
TAAAATTAATAAATAATT
Found at i:8545198 original size:29 final size:28
Alignment explanation
Indices: 8545156--8545210 Score: 101
Period size: 29 Copynumber: 1.9 Consensus size: 28
8545146 TCTCAACCAT
8545156 TAAGTATCAAATAAATCAATTTTATTTTG
1 TAAGTATCAAATAAATCAA-TTTATTTTG
8545185 TAAGTATCAAATAAATCAATTTATTT
1 TAAGTATCAAATAAATCAATTTATTT
8545211 ACGAAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (28 bp):
TAAGTATCAAATAAATCAATTTATTTTG
Found at i:8545766 original size:27 final size:27
Alignment explanation
Indices: 8545736--8545797 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
8545726 TAAATGAAAC
*
8545736 AAAGAAAATAAAATCATATAAA-TGAGG
1 AAAGAAAATAAAATCATATAAACAG-GG
* * *
8545763 AAAGAAATTAGAATCATCTAAACAGGG
1 AAAGAAAATAAAATCATATAAACAGGG
8545790 AAAGAAAA
1 AAAGAAAA
8545798 ATACCCATGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.61, C:0.06, G:0.16, T:0.16
Consensus pattern (27 bp):
AAAGAAAATAAAATCATATAAACAGGG
Found at i:8546619 original size:22 final size:22
Alignment explanation
Indices: 8546572--8546621 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
8546562 TCATATCATG
*
8546572 TAATTATATTATTTGAAAAAAT
1 TAATTATATTATTTGAAAAAAC
8546594 TAATTAT-TTATTAT-AAAATAAC
1 TAATTATATTATT-TGAAAA-AAC
8546616 TAATTA
1 TAATTA
8546622 ATCTATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 9 0.36
22 16 0.64
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
TAATTATATTATTTGAAAAAAC
Found at i:8547691 original size:18 final size:20
Alignment explanation
Indices: 8547655--8547704 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 20
8547645 AAGGTTATTT
*
8547655 AAATTATTTAATATTTATAA
1 AAATTATTTAATATATATAA
8547675 AAATTATTT-AT-TATATAA
1 AAATTATTTAATATATATAA
*
8547693 AATTTA-TTAATA
1 AAATTATTTAATA
8547705 AATAATTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 2 0.08
18 13 0.50
19 2 0.08
20 9 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AAATTATTTAATATATATAA
Found at i:8547720 original size:38 final size:38
Alignment explanation
Indices: 8547671--8547772 Score: 98
Period size: 38 Copynumber: 2.7 Consensus size: 38
8547661 TTTAATATTT
* *
8547671 ATAAAAATTATTTATTATATAAAATTTAT-TAATAAATA
1 ATAAAATTTATTTATTATAT-AAATTCATGTAATAAATA
** ** ** *
8547709 ATTGAATTTATTTAAAATATTTATTCATGTATTAAATA
1 ATAAAATTTATTTATTATATAAATTCATGTAATAAATA
8547747 ATAAAATTTATTTATTATATTAAATT
1 ATAAAATTTATTTATTATA-TAAATT
8547773 ATCAAATTTA
Statistics
Matches: 47, Mismatches: 15, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
37 5 0.11
38 38 0.81
39 4 0.09
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (38 bp):
ATAAAATTTATTTATTATATAAATTCATGTAATAAATA
Found at i:8549777 original size:157 final size:157
Alignment explanation
Indices: 8549591--8550122 Score: 525
Period size: 159 Copynumber: 3.4 Consensus size: 157
8549581 ATTAAATATG
* * * * *
8549591 CAATAG-TTTCACTTTTCACAAATTCATTGCATTTTAATCCACACAAAATACTATTTAGTTTAA-
1 CAATAGTTTTCACTTTTCACAAAATCATTGCATTTCAATACACACAAAATACTATCTAGTTCAAT
* * * ** * *
8549654 ACTAAATTTCTTACGATATTTAGGCTTTGAATTACTATAAAGATAGTTCATCAATAATCGCAATA
66 ACTAAATTTC-TACAATGTTTAGGCTTTCAATTACTATAAATCTAATTCATCAATAATCACAATA
* *
8549719 CACAATCAAAATTACAAAACAAAATACA
130 CACAAACAAAATCACAAAACAAAATACA
* * ** *
8549747 CAATAGTTTTCACCTTTCACAAAGTCATTGCATTTCAATATGCACAAAATACTATCAAGTTCAAT
1 CAATAGTTTTCACTTTTCACAAAATCATTGCATTTCAATACACACAAAATACTATCTAGTTCAAT
* * * * *
8549812 ATTGAATTTCCTACAATGTTTAGGCTTTTAATTACTACACTATCTAATTCATCAATAATCACAAT
66 ACTAAATTT-CTACAATGTTTAGGCTTTCAATTACTATA-AATCTAATTCATCAATAATCACAAT
** *
8549877 ACACAAACCGAATCACAAAGCAAAATACA
129 ACACAAACAAAATCACAAAACAAAATACA
* * * * * *
8549906 TAATAATTTTCACTTTTCACAAAATC-TTCGTATCTCAATACACACAAAACATTATCTAGTTCAA
1 CAATAGTTTTCACTTTTCACAAAATCATT-GCATTTCAATACACACAAAATACTATCTAGTTCAA
* *
8549970 TACTTAAATTTCTACAATGTTTAGGCTTTCAATTACTATAATATCTACTTCATCAACAATCACAA
65 TAC-TAAATTTCTACAATGTTTAGGCTTTCAATTACTATAA-ATCTAATTCATCAATAATCACAA
** * ** **
8550035 TACAC-AACTACTATCACAAAGCAAGTTAGG
128 TACACAAAC-AAAATCACAAAACAAAATACA
* * * * * *
8550065 CAATAGTTTTGACTTTTCACAAAGTCTTTGCATCTT-AAAACACACAAGATATTATCTA
1 CAATAGTTTTCACTTTTCACAAAATCATTGCAT-TTCAATACACACAAAATACTATCTA
8550123 TTTTAATAAA
Statistics
Matches: 307, Mismatches: 59, Indels: 17
0.80 0.15 0.04
Matches are distributed among these distances:
156 6 0.02
157 48 0.16
158 36 0.12
159 208 0.68
160 9 0.03
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (157 bp):
CAATAGTTTTCACTTTTCACAAAATCATTGCATTTCAATACACACAAAATACTATCTAGTTCAAT
ACTAAATTTCTACAATGTTTAGGCTTTCAATTACTATAAATCTAATTCATCAATAATCACAATAC
ACAAACAAAATCACAAAACAAAATACA
Found at i:8553302 original size:17 final size:17
Alignment explanation
Indices: 8553244--8553305 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
8553234 TTTAGTCACG
*
8553244 TTAATAAAAACTTAAAAA
1 TTAATAAAAA-TTTAAAA
* * *
8553262 TAAATAAAAA-ATATATA
1 TTAATAAAAATTTA-AAA
*
8553279 TTCATAAAAATTTAAAA
1 TTAATAAAAATTTAAAA
8553296 TTAATAAAAA
1 TTAATAAAAA
8553306 AGATTTACGT
Statistics
Matches: 33, Mismatches: 9, Indels: 5
0.70 0.19 0.11
Matches are distributed among these distances:
16 1 0.03
17 21 0.64
18 11 0.33
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
TTAATAAAAATTTAAAA
Found at i:8555416 original size:27 final size:27
Alignment explanation
Indices: 8555386--8555443 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
8555376 AAACAAAATT
*
8555386 ATATACTCAAATATTGCTATACCACTC
1 ATATACTCAAATAATGCTATACCACTC
* *
8555413 ATATACTCTAATAATGCTATACCACTT
1 ATATACTCAAATAATGCTATACCACTC
8555440 ATAT
1 ATAT
8555444 GCCACTCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.36
Consensus pattern (27 bp):
ATATACTCAAATAATGCTATACCACTC
Found at i:8555582 original size:2 final size:2
Alignment explanation
Indices: 8555575--8555600 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8555565 TTTGTTTGGA
8555575 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8555601 GCAAAGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8555935 original size:24 final size:24
Alignment explanation
Indices: 8555903--8555958 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 24
8555893 AAGTTTGAAG
* *
8555903 TATGTCTTCCTTGTGGGTTTAGACA
1 TATG-CTTCCTAGTCGGTTTAGACA
8555928 TATGCTT-CTAGTCGGTTTAGACA
1 TATGCTTCCTAGTCGGTTTAGACA
8555951 TATGCTTC
1 TATGCTTC
8555959 TGGGGGAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 21 0.75
24 3 0.11
25 4 0.14
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (24 bp):
TATGCTTCCTAGTCGGTTTAGACA
Found at i:8561680 original size:51 final size:51
Alignment explanation
Indices: 8561621--8561721 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
8561611 ATAATAATAA
* * * *
8561621 TAAAATTTTTAATCCTACCAAATTATTGGAGGATTTAAATCTTGAATTAGG
1 TAAAATTTTCAATCCTACCAAACTATTGGAGAATTTAAATATTGAATTAGG
* *
8561672 TAAAATTTTCAATCTTACTAAACTATTGGAGAATTTAAATATTGAATTAG
1 TAAAATTTTCAATCCTACCAAACTATTGGAGAATTTAAATATTGAATTAG
8561722 ATCTTACTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.40
Consensus pattern (51 bp):
TAAAATTTTCAATCCTACCAAACTATTGGAGAATTTAAATATTGAATTAGG
Found at i:8562971 original size:20 final size:19
Alignment explanation
Indices: 8562946--8562994 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
8562936 TTCTTATTGC
8562946 ATTCATGCATACATGCATTA
1 ATTCATGCATACATGCA-TA
* *
8562966 ATTCATGCATTCATGCATC
1 ATTCATGCATACATGCATA
8562985 ATTCATGCAT
1 ATTCATGCAT
8562995 TATTCCATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.37
Consensus pattern (19 bp):
ATTCATGCATACATGCATA
Found at i:8563898 original size:14 final size:14
Alignment explanation
Indices: 8563879--8563906 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8563869 GAGCAATGAA
8563879 GTTTGAAAATTCTT
1 GTTTGAAAATTCTT
8563893 GTTTGAAAATTCTT
1 GTTTGAAAATTCTT
8563907 TGCAAGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (14 bp):
GTTTGAAAATTCTT
Found at i:8566279 original size:46 final size:46
Alignment explanation
Indices: 8566179--8566443 Score: 222
Period size: 46 Copynumber: 5.8 Consensus size: 46
8566169 TTTGAAAAAC
* * ** *
8566179 AATCTTTGAAACTTTGGAAGTGAATCTC-AAAATTTTTTGAATATG
1 AATCTTTGAAACTTTGGATGTAAATCTCTAAAATTTTTCAAATGTG
* * *
8566224 AATCCTTGAAA-TGTTGGATGTAAATCTTTAAAATTTTTCAACTGTG
1 AATCTTTGAAACT-TTGGATGTAAATCTCTAAAATTTTTCAAATGTG
* * * * **
8566270 AATCTTTGAAACTTTGAATATGAATCT-T-TAATTTTTCAAATAAG
1 AATCTTTGAAACTTTGGATGTAAATCTCTAAAATTTTTCAAATGTG
* *** *
8566314 AGTCTTTGAAACTTTGGATACGAATCTCTAAAAATTTTCAAATGTG
1 AATCTTTGAAACTTTGGATGTAAATCTCTAAAATTTTTCAAATGTG
* *
8566360 AATCTTTGAAATTTTGG-T-TAGGAATCCCTAAAATTTTTCAAATGTG
1 AATCTTTGAAACTTTGGATGTA--AATCTCTAAAATTTTTCAAATGTG
* *
8566406 AATATTTGAAA-TTATGGACGTGAAATC-CTAAAATTTTT
1 AATCTTTGAAACTT-TGGATGT-AAATCTCTAAAATTTTT
8566444 TTGGTAAGAA
Statistics
Matches: 178, Mismatches: 31, Indels: 21
0.77 0.13 0.09
Matches are distributed among these distances:
44 37 0.21
45 27 0.15
46 107 0.60
47 5 0.03
48 1 0.01
49 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.40
Consensus pattern (46 bp):
AATCTTTGAAACTTTGGATGTAAATCTCTAAAATTTTTCAAATGTG
Found at i:8566296 original size:22 final size:22
Alignment explanation
Indices: 8566214--8566340 Score: 69
Period size: 22 Copynumber: 5.7 Consensus size: 22
8566204 CTCAAAATTT
*
8566214 TTTGAATATGAATCCTTGAAA-
1 TTTGAATATGAATCTTTGAAAC
* * * * *
8566235 TGTTGGATGTAAATCTTTAAAATT
1 T-TTGAATATGAATCTTTGAAA-C
* *
8566259 TTTCAACTGTGAATCTTTGAAAC
1 TTTGAA-TATGAATCTTTGAAAC
**
8566282 TTTGAATATGAATCTTT-AATT
1 TTTGAATATGAATCTTTGAAAC
* * *
8566303 TTTCAAATAAGAGTCTTTGAAAC
1 TTT-GAATATGAATCTTTGAAAC
* *
8566326 TTTGGATACGAATCT
1 TTTGAATATGAATCT
8566341 CTAAAAATTT
Statistics
Matches: 77, Mismatches: 23, Indels: 11
0.69 0.21 0.10
Matches are distributed among these distances:
21 6 0.08
22 44 0.57
23 13 0.17
24 14 0.18
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (22 bp):
TTTGAATATGAATCTTTGAAAC
Found at i:8566475 original size:46 final size:47
Alignment explanation
Indices: 8566123--8566477 Score: 171
Period size: 46 Copynumber: 7.8 Consensus size: 47
8566113 AATTTTTATT
* ** * *
8566123 TTTTTCAAATAAGAATCTTTAAAATTTT-AATGTG-AAGCCAT-AAA
1 TTTTTCAAATAAGAATCTTTGAAATTTTGGTTGTGAAATCCCTAAAA
* * * * ** *
8566167 GTTTTGAAA-AACAATCTTTGAAACTTTGGAAGTG-AATCTC-AAAA
1 TTTTTCAAATAAGAATCTTTGAAATTTTGGTTGTGAAATCCCTAAAA
** * * * * **
8566211 TTTTTTGAATATGAATCCTTGAAATGTTGGATGT-AAATCTTTAAAA
1 TTTTTCAAATAAGAATCTTTGAAATTTTGGTTGTGAAATCCCTAAAA
* ** * ** * **
8566257 TTTTTCAACTGTGAATCTTTGAAACTTTGAATATG-AAT--CTTTAA
1 TTTTTCAAATAAGAATCTTTGAAATTTTGGTTGTGAAATCCCTAAAA
* * * ** *
8566301 TTTTTCAAATAAGAGTCTTTGAAACTTTGGATACG-AATCTCTAAAA
1 TTTTTCAAATAAGAATCTTTGAAATTTTGGTTGTGAAATCCCTAAAA
* **
8566347 ATTTTCAAATGTGAATCTTTGAAATTTTGGTTAG-G-AATCCCTAAAA
1 TTTTTCAAATAAGAATCTTTGAAATTTTGGTT-GTGAAATCCCTAAAA
** * * **
8566393 TTTTTCAAATGTGAATATTTGAAATTATGGACGTGAAAT-CCTAAAA
1 TTTTTCAAATAAGAATCTTTGAAATTTTGGTTGTGAAATCCCTAAAA
****
8566439 TTTTTTTGGTAAGAATCTTTGAAATTTTGGTTGTGAAAT
1 TTTTTCAAATAAGAATCTTTGAAATTTTGGTTGTGAAAT
8566478 GTTAAAGTTT
Statistics
Matches: 237, Mismatches: 63, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
43 15 0.06
44 58 0.24
45 24 0.10
46 137 0.58
47 3 0.01
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.40
Consensus pattern (47 bp):
TTTTTCAAATAAGAATCTTTGAAATTTTGGTTGTGAAATCCCTAAAA
Found at i:8566517 original size:22 final size:23
Alignment explanation
Indices: 8566470--8566534 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
8566460 AAATTTTGGT
* * *
8566470 TGTGAAATGTTAAAGTTTTTTAA
1 TGTGAATTTTTAAAATTTTTTAA
8566493 TGTGAATTTTTAAAATTTTTT-A
1 TGTGAATTTTTAAAATTTTTTAA
* *
8566515 TGTGAATCTCT-AAATTTTTT
1 TGTGAATTTTTAAAATTTTTT
8566535 GACTAAAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 9 0.24
22 10 0.27
23 18 0.49
ACGTcount: A:0.31, C:0.03, G:0.12, T:0.54
Consensus pattern (23 bp):
TGTGAATTTTTAAAATTTTTTAA
Found at i:8566534 original size:23 final size:22
Alignment explanation
Indices: 8566480--8566534 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
8566470 TGTGAAATGT
* *
8566480 TAAAGTTTTTTAATGTGAATTTT
1 TAAA-TTTTTTAATGTGAATCTC
8566503 TAAAATTTTTT-ATGTGAATCTC
1 T-AAATTTTTTAATGTGAATCTC
8566525 TAAATTTTTT
1 TAAATTTTTT
8566535 GACTAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 9 0.31
22 10 0.34
23 7 0.24
24 3 0.10
ACGTcount: A:0.31, C:0.04, G:0.09, T:0.56
Consensus pattern (22 bp):
TAAATTTTTTAATGTGAATCTC
Found at i:8566592 original size:36 final size:36
Alignment explanation
Indices: 8566552--8566632 Score: 110
Period size: 36 Copynumber: 2.2 Consensus size: 36
8566542 AATATTTAAC
8566552 TTTTGAATATGAATCTTAAAAATTTTTTGAAT-AGAA
1 TTTTGAATATGAATCTTAAAAA-TTTTTGAATGAGAA
* * *
8566588 TTTTGGATATGAATTTTTAAAATTTTTGAATGAGAA
1 TTTTGAATATGAATCTTAAAAATTTTTGAATGAGAA
8566624 TCTTTGAAT
1 T-TTTGAAT
8566633 TCTTGAGGTG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
35 9 0.23
36 24 0.62
37 6 0.15
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.47
Consensus pattern (36 bp):
TTTTGAATATGAATCTTAAAAATTTTTGAATGAGAA
Found at i:8566664 original size:21 final size:21
Alignment explanation
Indices: 8566621--8566680 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
8566611 TTTTGAATGA
* * * *
8566621 GAATCTTTGAATTCTTGAGGT
1 GAATCCTTGAATTTTTTATGT
8566642 GAA-CCTTGAAATTTTTTATGT
1 GAATCCTTG-AATTTTTTATGT
*
8566663 GAATTCTTGAATTTTTTA
1 GAATCCTTGAATTTTTTA
8566681 AATATAAAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 4 0.12
21 24 0.75
22 4 0.12
ACGTcount: A:0.27, C:0.08, G:0.17, T:0.48
Consensus pattern (21 bp):
GAATCCTTGAATTTTTTATGT
Found at i:8566861 original size:16 final size:17
Alignment explanation
Indices: 8566830--8566867 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
8566820 AAAACTTGCA
8566830 AATCTAAAACTCTTGTG
1 AATCTAAAACTCTTGTG
*
8566847 AATCT-AAAGTCTTGTG
1 AATCTAAAACTCTTGTG
8566863 AATCT
1 AATCT
8566868 TCCATTCTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (17 bp):
AATCTAAAACTCTTGTG
Found at i:8566877 original size:33 final size:33
Alignment explanation
Indices: 8566775--8566891 Score: 108
Period size: 33 Copynumber: 3.5 Consensus size: 33
8566765 TTTGTAAATT
* *
8566775 TTGTGAATCTGAAAATCTTATGAATCTTCCATCC
1 TTGTGAATCT-AAAATCTTGTGAATCTTCCATTC
* * * ** *** *
8566809 TTGGGAATATAAAAACTTGCAAATCTAAAACTC
1 TTGTGAATCTAAAATCTTGTGAATCTTCCATTC
*
8566842 TTGTGAATCTAAAGTCTTGTGAATCTTCCATTC
1 TTGTGAATCTAAAATCTTGTGAATCTTCCATTC
*
8566875 TTGTGAATCTAGAATCT
1 TTGTGAATCTAAAATCT
8566892 CTATGAAACA
Statistics
Matches: 60, Mismatches: 23, Indels: 1
0.71 0.27 0.01
Matches are distributed among these distances:
33 52 0.87
34 8 0.13
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (33 bp):
TTGTGAATCTAAAATCTTGTGAATCTTCCATTC
Found at i:8567381 original size:16 final size:16
Alignment explanation
Indices: 8567360--8567390 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8567350 TACCATTAAT
8567360 TTTTAGTTTTAATTTC
1 TTTTAGTTTTAATTTC
8567376 TTTTAGTTTTAATTT
1 TTTTAGTTTTAATTT
8567391 TAGTCCTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.71
Consensus pattern (16 bp):
TTTTAGTTTTAATTTC
Found at i:8568131 original size:99 final size:99
Alignment explanation
Indices: 8567962--8568300 Score: 345
Period size: 99 Copynumber: 3.4 Consensus size: 99
8567952 TGAATTTTAC
* *
8567962 CAAACTATTTGAGAATTTCATAATGAATTTTTGTTTGAAAAT-A-AAAT-AAAATTTTCAATCTT
1 CAAACTA-TTGAGAA-TT--TAATGAA--TTT-TTTAAAAATAATAAATAAAAATTTTTAATCTT
* *
8568024 ACCAAACTATTGGAATATTTAAATCTTGAATTAAATCTTAC
59 ACCAAACTATTGGAAGATTTAAATCTTGAATTAAATCTTAT
* *
8568065 CAAACTATTAGAGAACTTAATGAA-TTTTTAAAAATAATAAATAAAAATTTTTAATCTTACCCAA
1 CAAACTATT-GAGAATTTAATGAATTTTTTAAAAATAATAAATAAAAATTTTTAATCTTACCAAA
* * * *
8568129 CTATTGGAGGATTTAAATCCTGATTTAAGTCTTAT
65 CTATTGGAAGATTTAAATCTTGAATTAAATCTTAT
* * *
8568164 CAAAATATTGGAGGATTTAATGAATTTTTGTAAAAA-AAT-AATAAAAA-TTTTAATCCTACCAA
1 CAAACTATT-GAGAATTTAATGAATTTTT-TAAAAATAATAAATAAAAATTTTTAATCTTACCAA
* * *
8568226 ATTATT-GAAGGATTTAAAATATTGAATTAGATCTTAT
64 ACTATTGGAA-GATTT-AAATCTTGAATTAAATCTTAT
8568263 CAAACTATTG-GAATGTTTAATGAATTTTTTAAAAATAA
1 CAAACTATTGAGAA--TTTAATGAATTTTTTAAAAATAA
8568301 ATTTCATACA
Statistics
Matches: 200, Mismatches: 25, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
96 8 0.04
97 7 0.04
98 34 0.17
99 116 0.58
100 14 0.07
101 6 0.03
102 3 0.01
103 12 0.06
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.38
Consensus pattern (99 bp):
CAAACTATTGAGAATTTAATGAATTTTTTAAAAATAATAAATAAAAATTTTTAATCTTACCAAAC
TATTGGAAGATTTAAATCTTGAATTAAATCTTAT
Found at i:8568413 original size:21 final size:21
Alignment explanation
Indices: 8568371--8568414 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
8568361 GTTATTAGTA
* *
8568371 TTTTTGTTATAGTATACCATG
1 TTTTTATTATAGTATAACATG
*
8568392 TTTTTATTATAGTATAATATG
1 TTTTTATTATAGTATAACATG
8568413 TT
1 TT
8568415 ATAATATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.57
Consensus pattern (21 bp):
TTTTTATTATAGTATAACATG
Found at i:8568449 original size:3 final size:3
Alignment explanation
Indices: 8568441--8568615 Score: 116
Period size: 3 Copynumber: 60.0 Consensus size: 3
8568431 GTATAGTATC
* * *
8568441 ATT ATT ATT GTA ATT ATAT AGT A-T ATT ATT A-T ATT ATT ATT A-T
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *** * * *
8568484 AGT CCG AT- ATT ATT ATT ATT ACTC A-T ATT ATT ATC ATT A-T ACT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
* * * *
8568527 A-T ATTT ATT A-T ACT ATA ATTT ATC AAT ATT ATT ATT ATT A-T ATT
1 ATT A-TT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT
*
8568571 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8568616 TTAATTTTGT
Statistics
Matches: 136, Mismatches: 23, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
2 17 0.12
3 111 0.82
4 8 0.06
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:8569422 original size:27 final size:25
Alignment explanation
Indices: 8569392--8569464 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 25
8569382 CAGGTTTTCC
8569392 TTTTTCTATTTTTATTTTATTTTTTGA
1 TTTTT-TATTTTTATTTTATTTTTT-A
*
8569419 --TTTTGTTTTT-TTTTATTTCTTTA
1 TTTTTTATTTTTATTTTATTT-TTTA
*
8569442 TTCATTTATTTTTATTTTATTTT
1 TT-TTTTATTTTTATTTTATTTT
8569465 ACTGGTTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
23 9 0.24
24 9 0.24
25 3 0.08
26 9 0.24
27 8 0.21
ACGTcount: A:0.14, C:0.04, G:0.03, T:0.79
Consensus pattern (25 bp):
TTTTTTATTTTTATTTTATTTTTTA
Found at i:8581014 original size:59 final size:60
Alignment explanation
Indices: 8580846--8581053 Score: 195
Period size: 60 Copynumber: 3.5 Consensus size: 60
8580836 TTGACTCGCA
* * * * * * **
8580846 GCATTATCTTAGTCATTCATCTATGACCTTGACTTGGTCTCGATCGCTTTCAGACTCACA
1 GCATCATCTTGGTCATTCATCTATAACCTTGACTTGGTCTTGGTCACTTTCAGACTCATG
* * * * *
8580906 GCATCATCTTGGTCATTCATCTATGACCTTGACTCGATCTTAGTTACTTTCAGACTCATG
1 GCATCATCTTGGTCATTCATCTATAACCTTGACTTGGTCTTGGTCACTTTCAGACTCATG
* * * * *
8580966 GTATTATC-TGGTCATTTATCT-TCAACCTTAACTTGGTCTTGGTCACTTTCAAACTCATG
1 GCATCATCTTGGTCATTCATCTAT-AACCTTGACTTGGTCTTGGTCACTTTCAGACTCATG
*** *
8581025 GCATCATCCCAGTCATTCATCTATGACCT
1 GCATCATCTTGGTCATTCATCTATAACCT
8581054 CAACTAGATC
Statistics
Matches: 118, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
58 1 0.01
59 47 0.40
60 69 0.58
61 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (60 bp):
GCATCATCTTGGTCATTCATCTATAACCTTGACTTGGTCTTGGTCACTTTCAGACTCATG
Found at i:8581075 original size:60 final size:60
Alignment explanation
Indices: 8580856--8581100 Score: 188
Period size: 60 Copynumber: 4.1 Consensus size: 60
8580846 GCATTATCTT
* * * * * * **
8580856 AGTCATTCATCTATGACCTTGACTTGGTCTCGATCGCTTTCAGACTCACAGCATCATCTT
1 AGTCATTCATCTATGACCTTAACTTGATCTTGGTCACTTTCAAACTCACAGCATCATCCC
* * * * * * ** * * *
8580916 GGTCATTCATCTATGACCTTGACTCGATCTTAGTTACTTTCAGACTCATGGTATTAT-CT
1 AGTCATTCATCTATGACCTTAACTTGATCTTGGTCACTTTCAAACTCACAGCATCATCCC
* * * * **
8580975 GGTCATTTATCT-TCAACCTTAACTTGGTCTTGGTCACTTTCAAACTCATGGCATCATCCC
1 AGTCATTCATCTAT-GACCTTAACTTGATCTTGGTCACTTTCAAACTCACAGCATCATCCC
* * ** * *
8581035 AGTCATTCATCTATGACCTCAACTAGATCTTGGTTGCTTTCAAACTCACATCATCATCTC
1 AGTCATTCATCTATGACCTTAACTTGATCTTGGTCACTTTCAAACTCACAGCATCATCCC
8581095 AGTCAT
1 AGTCAT
8581101 CCTATCTCGA
Statistics
Matches: 146, Mismatches: 36, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
58 1 0.01
59 46 0.32
60 98 0.67
61 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (60 bp):
AGTCATTCATCTATGACCTTAACTTGATCTTGGTCACTTTCAAACTCACAGCATCATCCC
Done.