Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 4 of 131
Found at i:498006 original size:14 final size:14
Alignment explanation
Indices: 497989--498048 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
497979 TTAAACTCTT
497989 AAATCCAAACCCCA
1 AAATCCAAACCCCA
*
498003 AAATCCAAAATCCCTA
1 AAATCC-AAA-CCCCA
* **
498019 AAATCCAAAACCTT
1 AAATCCAAACCCCA
*
498033 AAATCAAAACCCCA
1 AAATCCAAACCCCA
498047 AA
1 AA
498049 CCTCAAAACC
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
14 21 0.57
15 6 0.16
16 10 0.27
ACGTcount: A:0.53, C:0.33, G:0.00, T:0.13
Consensus pattern (14 bp):
AAATCCAAACCCCA
Found at i:498056 original size:51 final size:50
Alignment explanation
Indices: 497993--498102 Score: 125
Period size: 51 Copynumber: 2.2 Consensus size: 50
497983 ACTCTTAAAT
* *
497993 CCAAACCCCAAAATCCAAAATCCCTAAAATC-CAAAAC-CTTAAATCAAAACC
1 CCAAACCTCAAAA-CCAAAA-CCCTAAAATCTC-AAACTCTAAAATCAAAACC
* *
498044 CCAAACCTCAAAACCCAAACTCTAAAATCTTCAAACTCTAAAATCAAAACC
1 CCAAACCTCAAAACCAAAACCCTAAAATC-TCAAACTCTAAAATCAAAACC
*
498095 CTAAACCT
1 CCAAACCT
498103 TTCATATCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
49 9 0.18
50 9 0.18
51 33 0.65
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.16
Consensus pattern (50 bp):
CCAAACCTCAAAACCAAAACCCTAAAATCTCAAACTCTAAAATCAAAACC
Found at i:504790 original size:102 final size:100
Alignment explanation
Indices: 504666--504859 Score: 307
Period size: 102 Copynumber: 1.9 Consensus size: 100
504656 TTATTTTTTA
* * *
504666 TTTTTTATCATCGAACAGGGAAAGAAAAAAATGGTTAAGGTACAAAGTCATTCTTATTCTTCTAA
1 TTTTTTATCATCAAACAAGGAAAGAAAAAAATGGTTAAAGTACAAAGTCATTCTTATTCTTCTAA
*
504731 CAAAATCTAGAAGTTATTCTTATTCTAAAGAATTAT
66 CAAAATC-AGAAATTATTCTTATTCTAAAGAATTAT
* *
504767 TTTTTATATCATCAAACAAGGAAAGAAAAAAATGGTTAAAGTACAAAGTGATTCTTATTCTTGTA
1 TTTTT-TATCATCAAACAAGGAAAGAAAAAAATGGTTAAAGTACAAAGTCATTCTTATTCTTCTA
*
504832 CCAAAATCAGAAATTATTCTTATTCTAA
65 ACAAAATCAGAAATTATTCTTATTCTAA
504860 CTTCCAAACT
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
101 24 0.28
102 61 0.72
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (100 bp):
TTTTTTATCATCAAACAAGGAAAGAAAAAAATGGTTAAAGTACAAAGTCATTCTTATTCTTCTAA
CAAAATCAGAAATTATTCTTATTCTAAAGAATTAT
Found at i:512357 original size:16 final size:17
Alignment explanation
Indices: 512336--512373 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
512326 AATTCATAAA
*
512336 TTTATTTTG-TAAAGAT
1 TTTATTTTGAAAAAGAT
512352 TTTA-TTTGAAAAAGAT
1 TTTATTTTGAAAAAGAT
512368 TTTATT
1 TTTATT
512374 ATTATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 4 0.21
16 14 0.74
17 1 0.05
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (17 bp):
TTTATTTTGAAAAAGAT
Found at i:513451 original size:13 final size:13
Alignment explanation
Indices: 513429--513458 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
513419 GGATTGGAGC
*
513429 AAAAGGAAAAATG
1 AAAAGAAAAAATG
513442 AAAAGAAAAAATG
1 AAAAGAAAAAATG
513455 AAAA
1 AAAA
513459 TAGCAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.07
Consensus pattern (13 bp):
AAAAGAAAAAATG
Found at i:513976 original size:120 final size:119
Alignment explanation
Indices: 513816--514076 Score: 315
Period size: 120 Copynumber: 2.2 Consensus size: 119
513806 TGACCAAGAT
*** * * * * *
513816 CGAGTCGAGGTTAAAAATAAATGATTGGGATAAAATCACGAGTCATAAGAAATGATCTTAACTGA
1 CGAGTCGAGGTTAAAAATAAATGACCAGGACAAAACCACGAGTCATAAAAAATGATCTGAACTAA
* * * * * *
513881 GCTAAGATCAAATGACCGAGACAAAATCATGAGTTTAAAATAAAGCAACTAGGAC
66 GCCAAGATCAAATGACCAAGACAAAACCACGAG-TCAAAATAAAGCAACCAGGAC
** * *
513936 CGAGTCGAGGTCGAAAATAAATGACCAGGACAAAACCACGAGTCATAAAAAATGATCTGGATTAA
1 CGAGTCGAGGTTAAAAATAAATGACCAGGACAAAACCACGAGTCATAAAAAATGATCTGAACTAA
* ** *
514001 GCCAAGATCAAGTGATTAAGACAAAACCACGAGTCAAAATAAAGCAACCAGGAT
66 GCCAAGATCAAATGACCAAGACAAAACCACGAGTCAAAATAAAGCAACCAGGAC
514055 CGAGTCGAGGTTAAAAATAAAT
1 CGAGTCGAGGTTAAAAATAAAT
514077 AACCGAAATG
Statistics
Matches: 117, Mismatches: 24, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
119 38 0.32
120 79 0.68
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.19
Consensus pattern (119 bp):
CGAGTCGAGGTTAAAAATAAATGACCAGGACAAAACCACGAGTCATAAAAAATGATCTGAACTAA
GCCAAGATCAAATGACCAAGACAAAACCACGAGTCAAAATAAAGCAACCAGGAC
Found at i:514091 original size:119 final size:119
Alignment explanation
Indices: 513808--514127 Score: 311
Period size: 120 Copynumber: 2.7 Consensus size: 119
513798 AAAAGAAATG
* ** ** * *
513808 ACCAAGATCGAGTCGAGGTTAAAAATAAATGATTGGGATAAAATCACGAGTCATAAGAAATGATC
1 ACCAGGATCGAGTCGAGGTTAAAAATAAATGACCGAAAT-AAACCACGAGTCATAAAAAATGATC
* * * * * * *
513873 TTAACTGAGCTAAGATCAAATGACCGAGACAAAATCATGAGTTTAAAATAAAGCA
65 TGAACTAAGCCAAGATCAAATGACCAAGACAAAACCACGAGTTCAAAATAAAGCA
* * ** *
513928 ACTAGGACCGAGTCGAGGTCGAAAATAAATGACCAGGACA-AAACCACGAGTCATAAAAAATGAT
1 ACCAGGATCGAGTCGAGGTTAAAAATAAATGACC--GAAATAAACCACGAGTCATAAAAAATGAT
* * * **
513992 CTGGATTAAGCCAAGATCAAGTGATTAAGACAAAACCACGAG-TCAAAATAAAGCA
64 CTGAACTAAGCCAAGATCAAATGACCAAGACAAAACCACGAGTTCAAAATAAAGCA
* * * * * *
514047 ACCAGGATCGAGTCGAGGTTAAAAATAAATAACCGAAATGAAACCACAAATTACAAGAAATGATC
1 ACCAGGATCGAGTCGAGGTTAAAAATAAATGACCGAAAT-AAACCACGAGTCATAAAAAATGATC
*
514112 TGAGCTAAGCCAAGAT
65 TGAACTAAGCCAAGAT
514128 TAAGTAATCG
Statistics
Matches: 159, Mismatches: 37, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
117 3 0.02
119 74 0.47
120 80 0.50
122 2 0.01
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.18
Consensus pattern (119 bp):
ACCAGGATCGAGTCGAGGTTAAAAATAAATGACCGAAATAAACCACGAGTCATAAAAAATGATCT
GAACTAAGCCAAGATCAAATGACCAAGACAAAACCACGAGTTCAAAATAAAGCA
Found at i:514147 original size:119 final size:118
Alignment explanation
Indices: 513899--514252 Score: 279
Period size: 119 Copynumber: 3.0 Consensus size: 118
513889 CAAATGACCG
* * * * * *
513899 AGACAAAATCATGAGTTTAAAATAAAGCAACTAGGACCGAGTCGAGGTCGAAAATAAATGACCAG
1 AGACAAAACCACGAG-TCAAAATAAAGCAACCAGGACCGAGTCGAGGTCAAAAATAAATAACCA-
* * * * * * *
513964 GACAAAACCACGAGTCATAAAAAATGATCTGGATTAAGCCAAGATCAAGTGATTA
64 GAAAAAACCACAAATCACAAAAAATGATCTGGACTAAGCCAAGATCAAGTAATCA
* *
514019 AGACAAAACCACGAGTCAAAATAAAGCAACCAGGATCGAGTCGAGGTTAAAAATAAATAACC-GA
1 AGACAAAACCACGAGTCAAAATAAAGCAACCAGGACCGAGTCGAGGTCAAAAATAAATAACCAGA
* * * *
514083 AATGAAACCACAAATTACAAGAAATGATCT-GAGCTAAGCCAAGATTAAGTAATCG
66 AA--AAACCACAAATCACAAAAAATGATCTGGA-CTAAGCCAAGATCAAGTAATCA
* * * * * * * *
514138 AGACGAAACCA-TAGGTAAAAAATGAAA-CGACTAGGACCTACT-GAGGTCAAAAATAAATATCC
1 AGACAAAACCACGA-GT-CAAAAT-AAAGCAACCAGGACCGAGTCGAGGTCAAAAATAAATAACC
** * * * * *
514200 AGGATGAAACCACGAATCA-TAAGAATGATCTGGACTGAGCCAAGATCAGGTAA
63 A-GAAAAAACCACAAATCACAAAAAATGATCTGGACTAAGCCAAGATCAAGTAA
514253 ATGAGTAATG
Statistics
Matches: 186, Mismatches: 39, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
117 3 0.02
118 28 0.15
119 122 0.66
120 28 0.15
121 5 0.03
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (118 bp):
AGACAAAACCACGAGTCAAAATAAAGCAACCAGGACCGAGTCGAGGTCAAAAATAAATAACCAGA
AAAAACCACAAATCACAAAAAATGATCTGGACTAAGCCAAGATCAAGTAATCA
Found at i:524738 original size:22 final size:24
Alignment explanation
Indices: 524694--524738 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
524684 TAAGTATACA
*
524694 CAATGAAAAGGAAAATAATATAAG
1 CAATGAAAAGGAAAATAAAATAAG
524718 CAATGAAAA-G-AAATAAAATAA
1 CAATGAAAAGGAAAATAAAATAA
524739 TTTTATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 10 0.50
23 1 0.05
24 9 0.45
ACGTcount: A:0.67, C:0.04, G:0.13, T:0.16
Consensus pattern (24 bp):
CAATGAAAAGGAAAATAAAATAAG
Found at i:525413 original size:8 final size:8
Alignment explanation
Indices: 525400--525429 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
525390 ATAAAAACTA
525400 TTTTTAAT
1 TTTTTAAT
525408 TTTTTAATT
1 TTTTTAA-T
525417 TTTTTAAT
1 TTTTTAAT
525425 TTTTT
1 TTTTT
525430 TGAAAACTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTAAT
Found at i:525419 original size:9 final size:9
Alignment explanation
Indices: 525400--525430 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
525390 ATAAAAACTA
525400 TTTTTAA-T
1 TTTTTAATT
525408 TTTTTAATT
1 TTTTTAATT
525417 TTTTTAATT
1 TTTTTAATT
525426 TTTTT
1 TTTTT
525431 GAAAACTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTAATT
Found at i:525733 original size:17 final size:18
Alignment explanation
Indices: 525701--525734 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
525691 TTTAATATGG
525701 AATAAAAATATGAAAACC
1 AATAAAAATATGAAAACC
*
525719 AATAAAATTAT-AAAAC
1 AATAAAAATATGAAAAC
525735 TAAAAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.68, C:0.09, G:0.03, T:0.21
Consensus pattern (18 bp):
AATAAAAATATGAAAACC
Found at i:536880 original size:259 final size:259
Alignment explanation
Indices: 536410--536928 Score: 923
Period size: 259 Copynumber: 2.0 Consensus size: 259
536400 AACAACAAGG
*
536410 AAAAAATAATAACTAGTCCTCTATGCAAGAATTGGGTTGAAGACATAGCTATAGATGATGCTAAT
1 AAAAAATAACAACTAGTCCTCTATGCAAGAATTGGGTTGAAGACATAGCTATAGATGATGCTAAT
536475 AACTGAATTTTTTAAGCACAATGGGGAATTCGCCCATGTCTTAATTATCCATACACCATAAGACC
66 AACTGAATTTTTTAAGCACAATGGGGAATTCGCCCATGTCTTAATTATCCATACACCATAAGACC
**
536540 AATTACTCCTAAACCAAGAAAGCATGAAGGAAAAGGAAATTCAGAACTGCTGATTCATATGATCA
131 AATTACTCCTAAACCAAGAAAGCATGAAGGAAAAGGAAATTCAGAACCACTGATTCATATGATCA
536605 CACTAGATATTCAGCCCATGCAATTGAAAGCATTCGTGAACTACATGCAAATCCACAAATCTAA
196 CACTAGATATTCAGCCCATGCAATTGAAAGCATTCGTGAACTACATGCAAATCCACAAATCTAA
* * * *
536669 AAAACAATAACAACTAGTTCTCTATGCAAGAATTGGGTTGAAGACATAGTTGTAGATGATGCTAG
1 AAAA-AATAACAACTAGTCCTCTATGCAAGAATTGGGTTGAAGACATAGCTATAGATGATGCTAA
*
536734 TAACTGAA-TTTTTAATCACAATGGGGAATTCGCCCATGTCTTAATTATCCATACACCATAAGAC
65 TAACTGAATTTTTTAAGCACAATGGGGAATTCGCCCATGTCTTAATTATCCATACACCATAAGAC
*
536798 CAATTATTCCTAAACCAAGAAAGCATGAAGGAAAAGGAAATTCAGAACCACTGATTCATATGATC
130 CAATTACTCCTAAACCAAGAAAGCATGAAGGAAAAGGAAATTCAGAACCACTGATTCATATGATC
* *
536863 ACACTAGATATTCAGCCCATGCAATTGAAAGCATTTGTGAACTACGTGCAAATCCACAAATCTAA
195 ACACTAGATATTCAGCCCATGCAATTGAAAGCATTCGTGAACTACATGCAAATCCACAAATCTAA
536928 A
1 A
536929 GTTTCCATTG
Statistics
Matches: 248, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
259 185 0.75
260 63 0.25
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (259 bp):
AAAAAATAACAACTAGTCCTCTATGCAAGAATTGGGTTGAAGACATAGCTATAGATGATGCTAAT
AACTGAATTTTTTAAGCACAATGGGGAATTCGCCCATGTCTTAATTATCCATACACCATAAGACC
AATTACTCCTAAACCAAGAAAGCATGAAGGAAAAGGAAATTCAGAACCACTGATTCATATGATCA
CACTAGATATTCAGCCCATGCAATTGAAAGCATTCGTGAACTACATGCAAATCCACAAATCTAA
Found at i:538232 original size:34 final size:34
Alignment explanation
Indices: 538189--538263 Score: 143
Period size: 34 Copynumber: 2.2 Consensus size: 34
538179 TAACCACCAA
538189 GCTATAAATGAGTGTAAGTACTTTGCCGAAGCAT
1 GCTATAAATGAGTGTAAGTACTTTGCCGAAGCAT
538223 GCTATAAATGAGTGTAAGTACTTTGCCGAAGCAT
1 GCTATAAATGAGTGTAAGTACTTTGCCGAAGCAT
538257 GCT-TAAA
1 GCTATAAA
538264 ACAAAGTAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 4 0.10
34 37 0.90
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (34 bp):
GCTATAAATGAGTGTAAGTACTTTGCCGAAGCAT
Found at i:541315 original size:14 final size:14
Alignment explanation
Indices: 541274--541326 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
541264 AAATTTTTTT
541274 AATTTAAGTTAA--A
1 AATTTAA-TTAATTA
* *
541287 AATTAAATTATTTA
1 AATTTAATTAATTA
*
541301 AATTTATTTAATTA
1 AATTTAATTAATTA
541315 AATTTAATTAAT
1 AATTTAATTAAT
541327 ATATAAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
12 3 0.09
13 6 0.19
14 23 0.72
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
AATTTAATTAATTA
Found at i:541512 original size:37 final size:38
Alignment explanation
Indices: 541470--541550 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 38
541460 AAGTATAAAA
*
541470 AAATTTAAATTTAATTCAATGATAAATTAAATT-ATTT
1 AAATTTAAATTTAATTCAATAATAAATTAAATTAATTT
* *
541507 AAATTTAAATTTAATTCAATAATAATTTAATTTAATTT
1 AAATTTAAATTTAATTCAATAATAAATTAAATTAATTT
541545 AAATTT
1 AAATTT
541551 TATTTGAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 30 0.75
38 10 0.25
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (38 bp):
AAATTTAAATTTAATTCAATAATAAATTAAATTAATTT
Found at i:541549 original size:16 final size:16
Alignment explanation
Indices: 541471--541569 Score: 60
Period size: 16 Copynumber: 5.9 Consensus size: 16
541461 AGTATAAAAA
*
541471 AATTTAAATTTAATTC
1 AATTTAAATTTAATTT
* *
541487 AATGATAAA-TTAAATT
1 AAT-TTAAATTTAATTT
541503 -ATTTAAATTTAAATTT
1 AATTTAAATTT-AATTT
541519 AATTCAATAATAATTTAATTT
1 AATT---T-A-AATTTAATTT
*
541540 AATTTAAATTTTATTT
1 AATTTAAATTTAATTT
*
541556 GAA-TTAAACTTAAT
1 -AATTTAAATTTAAT
541570 AACTTATAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 20
0.70 0.09 0.22
Matches are distributed among these distances:
14 4 0.06
15 4 0.06
16 30 0.46
17 10 0.15
18 1 0.02
20 1 0.02
21 10 0.15
22 5 0.08
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.48
Consensus pattern (16 bp):
AATTTAAATTTAATTT
Found at i:541569 original size:32 final size:31
Alignment explanation
Indices: 541471--541569 Score: 78
Period size: 32 Copynumber: 3.1 Consensus size: 31
541461 AGTATAAAAA
* *
541471 AATTTAAATTT-AATTCAATGATAAATTAAATT
1 AATTTAAATTTAAATTTAAT--TCAATTAAATT
*
541503 -ATTTAAATTTAAATTTAATTCAATAATAATTT
1 AATTTAAATTTAAATTTAATTCAAT--TAAATT
* *
541535 AATTT-AATTTAAATTTTATTTGAATTAAACTT
1 AATTTAAATTTAAA-TTTAATTCAATTAAA-TT
541567 AAT
1 AAT
541570 AACTTATAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
30 4 0.07
31 13 0.24
32 25 0.45
33 13 0.24
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.48
Consensus pattern (31 bp):
AATTTAAATTTAAATTTAATTCAATTAAATT
Found at i:544548 original size:90 final size:91
Alignment explanation
Indices: 544384--544548 Score: 235
Period size: 90 Copynumber: 1.8 Consensus size: 91
544374 TGATAAAATA
* * * *
544384 TGTGATTTTAAGTTGAATATTTTAATGGTAAGATTTTAAATTGGATGCTTAACATGATATCAAAG
1 TGTGATTTTAAGTTAAATACTTAAATGGTAAGATTTTAAATTGAATGCTTAACATGATATCAAAG
*
544449 TTAATATTTGTTTTTTTTGCTTAATT
66 TTAAAATTTGTTTTTTTTGCTTAATT
* * *
544475 TGTGA-TTTAAGTTAAATGCTTAAATGGTGAGATTTTAAGTTGAATGCTTAACATGATATCAGAA
1 TGTGATTTTAAGTTAAATACTTAAATGGTAAGATTTTAAATTGAATGCTTAACATGATATCA-AA
544539 -TTAAAATTTG
65 GTTAAAATTTG
544549 CTTTCATTGC
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
90 58 0.89
91 7 0.11
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (91 bp):
TGTGATTTTAAGTTAAATACTTAAATGGTAAGATTTTAAATTGAATGCTTAACATGATATCAAAG
TTAAAATTTGTTTTTTTTGCTTAATT
Found at i:544893 original size:131 final size:135
Alignment explanation
Indices: 544680--545049 Score: 473
Period size: 131 Copynumber: 2.8 Consensus size: 135
544670 TGTTTTTCCT
* * * * * * *
544680 AATTTGTCATGT-AAAAAACTTCTTTCATATTTATCTACACGTGATGGAGGTCATTGTCTTTTTT
1 AATTTGTCACGTGAAAAGACTTCTTTTATATTTGTTTACAC--AATGGAGGCCATTGTCTTTTTT
* * *
544744 TAATTTATGATTATAAGTTTGATACTTAACATAATATCAGAGTTAAGATTTTTTTTCATTA-TTT
64 TAATTTATGATTTTAAGTTAGATACTTAACATAATATCAGAGTTAAAATTTTTTTTCATTATTTT
544808 TTTTTTA
129 TTTTTTA
* * *
544815 AATTTGTCACGTG-AAAGATTTTTTTTATATTTGTTTACAC-GT-GAGGCCATTGTCTTTTTTTA
1 AATTTGTCACGTGAAAAGACTTCTTTTATATTTGTTTACACAATGGAGGCCATTGTCTTTTTTTA
* *
544877 ATTTATGATTTTAAGTTGGATACTTAACATAGTAT-AGAGTTAAAATTTTTTTTCATTATTTTTT
66 ATTTATGATTTTAAGTTAGATACTTAACATAATATCAGAGTTAAAATTTTTTTTCATTATTTTTT
*
544941 TTTTT
131 TTTTA
* * * *
544946 AATTTGTCACGTGAAAAGACTTCTTTTATATTTGTTTACACATAATGGAAGCTATTGTCTTTATC
1 AATTTGTCACGTGAAAAGACTTCTTTTATATTTGTTTACAC--AATGGAGGCCATTGTCTTTTTT
*
545011 TAATTTATGATTTTAAGTTAGATATTTAACATAATATCA
64 TAATTTATGATTTTAAGTTAGATACTTAACATAATATCA
545050 AAATTTTTCT
Statistics
Matches: 203, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
130 22 0.11
131 73 0.36
132 26 0.13
135 33 0.16
136 48 0.24
137 1 0.00
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.49
Consensus pattern (135 bp):
AATTTGTCACGTGAAAAGACTTCTTTTATATTTGTTTACACAATGGAGGCCATTGTCTTTTTTTA
ATTTATGATTTTAAGTTAGATACTTAACATAATATCAGAGTTAAAATTTTTTTTCATTATTTTTT
TTTTA
Found at i:545057 original size:131 final size:129
Alignment explanation
Indices: 544679--545093 Score: 405
Period size: 131 Copynumber: 3.1 Consensus size: 129
544669 TTGTTTTTCC
* * * * * *
544679 TAATTTGTCATGT-AAAAAACTTCTTTCATATTTATCTACACGTGATGG-AGGTCATTGTCTTTT
1 TAATTTGTCACGTGAAAAGACTTCTTTTATATTTGTTTACAC-T-ATGGAAGCT-ATTGTCTTTT
* *
544742 TTTAATTTATGATTATAAGTTTGATACTTAACATAATATCAGAGTTAAGATTTTTTTTCATTA-T
63 TTTAATTTATGATTTTAAGTTAGATACTTAACATAATATC--A---AA-ATTTTTTTTCATTATT
544806 TTTTTTTT
122 TTTTTTTT
* * * * * *
544814 AAATTTGTCACGTG-AAAGATTTTTTTTATATTTGTTTACAC-GT-GAGGCCATTGTCTTTTTTT
1 TAATTTGTCACGTGAAAAGACTTCTTTTATATTTGTTTACACTATGGAAGCTATTGTCTTTTTTT
* *
544876 AATTTATGATTTTAAGTTGGATACTTAACATAGTATAGAGTTAAAATTTTTTTTCATTATTTTTT
66 AATTTATGATTTTAAGTTAGATACTTAACATA--AT--A-TCAAAATTTTTTTTCATTATTTTTT
544941 TTTT
126 TTTT
*
544945 TAATTTGTCACGTGAAAAGACTTCTTTTATATTTGTTTACACATAATGGAAGCTATTGTCTTTAT
1 TAATTTGTCACGTGAAAAGACTTCTTTTATATTTGTTTACAC-T-ATGGAAGCTATTGTCTTTTT
* * * *
545010 CTAATTTATGATTTTAAGTTAGATATTTAACATAATATCAAAATTTTTCTTC--TATTATCTTTT
64 TTAATTTATGATTTTAAGTTAGATACTTAACATAATATCAAAATTTTTTTTCATTATT-TTTTTT
*
545073 CT
128 TT
**
545075 TAATTTGTCATATGAAAAG
1 TAATTTGTCACGTGAAAAG
545094 CTTATTCCCT
Statistics
Matches: 235, Mismatches: 31, Indels: 33
0.79 0.10 0.11
Matches are distributed among these distances:
129 4 0.02
130 37 0.16
131 81 0.34
132 28 0.12
133 2 0.01
134 3 0.01
135 34 0.14
136 46 0.20
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.50
Consensus pattern (129 bp):
TAATTTGTCACGTGAAAAGACTTCTTTTATATTTGTTTACACTATGGAAGCTATTGTCTTTTTTT
AATTTATGATTTTAAGTTAGATACTTAACATAATATCAAAATTTTTTTTCATTATTTTTTTTTT
Found at i:553796 original size:21 final size:21
Alignment explanation
Indices: 553772--553817 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
553762 ACTCAATTGG
*
553772 TTGATGCAACCACTGCTCCAA
1 TTGATGCAACCACGGCTCCAA
* **
553793 TTGATTCTTCCACGGCTCCAA
1 TTGATGCAACCACGGCTCCAA
553814 TTGA
1 TTGA
553818 ATCTTCAACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.30
Consensus pattern (21 bp):
TTGATGCAACCACGGCTCCAA
Found at i:553831 original size:21 final size:21
Alignment explanation
Indices: 553783--553831 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
553773 TGATGCAACC
* *
553783 ACTGCTCCAATTGATTCTTCC
1 ACTGCTCCAATTGAATCTTCA
*
553804 ACGGCTCCAATTGAATCTTCA
1 ACTGCTCCAATTGAATCTTCA
553825 ACTGCTC
1 ACTGCTC
553832 TAATAGATCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.33, G:0.12, T:0.33
Consensus pattern (21 bp):
ACTGCTCCAATTGAATCTTCA
Found at i:563025 original size:56 final size:56
Alignment explanation
Indices: 562958--563066 Score: 191
Period size: 56 Copynumber: 1.9 Consensus size: 56
562948 TGGAGTTCTC
*
562958 TTGCCAACTGATCAGATTATTTTTCTATTTTCCCATCACATGGGAAACAAAGCTTA
1 TTGCCAACTGATCAAATTATTTTTCTATTTTCCCATCACATGGGAAACAAAGCTTA
* *
563014 TTGCCAACTGATCAAATTATTTTTCTATTTTCCCGTGACATGGGAAACAAAGC
1 TTGCCAACTGATCAAATTATTTTTCTATTTTCCCATCACATGGGAAACAAAGC
563067 GTAATGGGCC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (56 bp):
TTGCCAACTGATCAAATTATTTTTCTATTTTCCCATCACATGGGAAACAAAGCTTA
Found at i:580005 original size:17 final size:17
Alignment explanation
Indices: 579983--580021 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
579973 TTTCTATTCC
579983 TTTTATTCTTTTTT-ATT
1 TTTTATT-TTTTTTAATT
580000 TTTTATTTTTTTTAATT
1 TTTTATTTTTTTTAATT
580017 TTTTA
1 TTTTA
580022 GTTGTAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTATTTTTTTTAATT
Found at i:589961 original size:53 final size:53
Alignment explanation
Indices: 589880--589984 Score: 192
Period size: 53 Copynumber: 2.0 Consensus size: 53
589870 AATAAAATCT
* *
589880 CCCAATGCATGGTATTCTTGTATGTGTACACAACAAACTCTACAGTTAACAAA
1 CCCAATGCATGGTATTCTTATATATGTACACAACAAACTCTACAGTTAACAAA
589933 CCCAATGCATGGTATTCTTATATATGTACACAACAAACTCTACAGTTAACAA
1 CCCAATGCATGGTATTCTTATATATGTACACAACAAACTCTACAGTTAACAA
589985 TGTAAAACCT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (53 bp):
CCCAATGCATGGTATTCTTATATATGTACACAACAAACTCTACAGTTAACAAA
Found at i:590138 original size:16 final size:16
Alignment explanation
Indices: 590107--590140 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
590097 GAACATTATT
*
590107 AATTAAACAGTATATA
1 AATTAAACACTATATA
*
590123 AATTAAACACTGTATA
1 AATTAAACACTATATA
590139 AA
1 AA
590141 GGGGGAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.09, G:0.06, T:0.29
Consensus pattern (16 bp):
AATTAAACACTATATA
Found at i:590395 original size:2 final size:2
Alignment explanation
Indices: 590390--590415 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
590380 TTCCCTCAAA
590390 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
590416 AAAATATAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:597652 original size:51 final size:48
Alignment explanation
Indices: 597559--597653 Score: 127
Period size: 51 Copynumber: 1.9 Consensus size: 48
597549 TTTTTGCCCT
**
597559 AAATTCAATTGCCCCTTCTTCTGATCTTCTCTTTTCAATAAAAACCCC
1 AAATTCAATTGCCCCTTCTTCTGATCTTCTCTTAACAATAAAAACCCC
* *
597607 AAATTCAATTGCCACTTCTTCTTCTGATCTTTTCTTAACAGTAAAAA
1 AAATTCAATTGCC-C--CTTCTTCTGATCTTCTCTTAACAATAAAAA
597654 AGTCTCTCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
48 13 0.32
49 1 0.03
51 26 0.65
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.39
Consensus pattern (48 bp):
AAATTCAATTGCCCCTTCTTCTGATCTTCTCTTAACAATAAAAACCCC
Found at i:597924 original size:27 final size:27
Alignment explanation
Indices: 597873--597924 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
597863 TAAGATTATG
* *
597873 ATAAAATAAGATAAAATGATATTATAA
1 ATAAAATAAAATAAAATAATATTATAA
*
597900 ATAAAATAAAATAAAATAATTTTAT
1 ATAAAATAAAATAAAATAATATTAT
597925 TATATTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (27 bp):
ATAAAATAAAATAAAATAATATTATAA
Found at i:599149 original size:21 final size:20
Alignment explanation
Indices: 599112--599155 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
599102 AAAAAAAATT
* * *
599112 ATTTTATTTTTATATAATAA
1 ATTTTAATTTGATATAAAAA
599132 ATTTTAATTTGATAATAAAAA
1 ATTTTAATTTGAT-ATAAAAA
599153 ATT
1 ATT
599156 ATAAATGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTTTAATTTGATATAAAAA
Found at i:600327 original size:17 final size:18
Alignment explanation
Indices: 600292--600344 Score: 63
Period size: 17 Copynumber: 3.0 Consensus size: 18
600282 TATTTATAAG
* * *
600292 TTTTAAATTATATAAATT
1 TTTTATATTTTATATATT
*
600310 TTTTATTTTTTAT-TATT
1 TTTTATATTTTATATATT
600327 TTTTATATTTTATATATT
1 TTTTATATTTTATATATT
600345 AATTGTTAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
17 15 0.52
18 14 0.48
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTATATTTTATATATT
Found at i:620380 original size:61 final size:59
Alignment explanation
Indices: 620311--620728 Score: 475
Period size: 61 Copynumber: 6.9 Consensus size: 59
620301 TTTATATAAG
* * * * *
620311 AAAATTGATACTTTCAACTTTTTCTCAAAAATGCTTTTTCTTTAACATTTTATTTTCAAAA
1 AAAATTGATACTTTCAACTTTTTCTTAAAAAT-ATTTTT-TTAAAAATTTTATTTTCAAGA
* * * * * *
620372 AAAATTGATACTTTCAACCTTTCCTTAAAAAATATATATATATTAAATTTTATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTTCTT-AAAAATATTTTTTTA-AAAATTTTATTTTCAAGA
* *
620433 AAAATTGATACTTTCAATTTTTTCTTAAAAATA-TTTTTAAAAAATTTTATTTTCAA-A
1 AAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTAAAAATTTTATTTTCAAGA
* * * *
620490 GAAAATTAATGCTTTCAACTTTTCCTTAAAAATATTTTTTTAAAAAAATTTTATTTTTAAGA
1 -AAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTT--AAAAATTTTATTTTCAAGA
* * *
620552 AAAATTGATACTTTCAAC-TTTTCTTTAAAAATGTCTTTTTAAAAAAATTTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTTC-TTAAAAATAT-TTTTT-TAAAAATTTTATTTTCAAGA
*
620613 AAAATTGATACTTTCAAC-TTTTCTTTAAAAAGGTATTTTTTAAAAAATTTTATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTTC-TTAAAAA--TATTTTTTTAAAAATTTTATTTTCAAGA
* *
620674 AAAATTGATACTTTCAACTTTTTCTTAAAAATATATTTTTTGAAAGTTTTATTTT
1 AAAATTGATACTTTCAACTTTTTCTTAAAAATAT-TTTTTTAAAAATTTTATTTT
620729 ATATTATTTT
Statistics
Matches: 308, Mismatches: 35, Indels: 29
0.83 0.09 0.08
Matches are distributed among these distances:
57 1 0.00
58 44 0.14
59 11 0.04
60 29 0.09
61 199 0.65
62 22 0.07
63 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.47
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTAAAAATTTTATTTTCAAGA
Found at i:620537 original size:17 final size:17
Alignment explanation
Indices: 620517--620556 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
620507 ACTTTTCCTT
620517 AAAAATATT-TTTTTAA
1 AAAAATATTATTTTTAA
*
620533 AAAAATTTTATTTTTAA
1 AAAAATATTATTTTTAA
620550 GAAAAAT
1 -AAAAAT
620557 TGATACTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 7 0.33
18 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
AAAAATATTATTTTTAA
Found at i:620796 original size:24 final size:21
Alignment explanation
Indices: 620767--620814 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 21
620757 AAATACTCTT
*
620767 AAAAATAAACAATCACATAAATAA
1 AAAAATAAAAAAT-ACA-AAA-AA
620791 AAAAATAAAAAATACAAAAAA
1 AAAAATAAAAAATACAAAAAA
620812 AAA
1 AAA
620815 TTCGAAACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 5 0.22
22 3 0.13
23 3 0.13
24 12 0.52
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.12
Consensus pattern (21 bp):
AAAAATAAAAAATACAAAAAA
Found at i:621257 original size:19 final size:20
Alignment explanation
Indices: 621229--621275 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
621219 AAGTAATTAC
*
621229 TAAAAATTGGAAAG-CTAAT
1 TAAAATTTGGAAAGTCTAAT
*
621248 TAAAATTTGGAAAGTCTACT
1 TAAAATTTGGAAAGTCTAAT
*
621268 AAAAATTT
1 TAAAATTT
621276 CAATTGGCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.49, C:0.06, G:0.13, T:0.32
Consensus pattern (20 bp):
TAAAATTTGGAAAGTCTAAT
Found at i:621274 original size:20 final size:19
Alignment explanation
Indices: 621226--621275 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
621216 TGAAAGTAAT
621226 TACTAAAAA-TTGGAAAGC
1 TACTAAAAATTTGGAAAGC
* *
621244 TAATTAAAATTTGGAAAGTC
1 TACTAAAAATTTGGAAAG-C
621264 TACTAAAAATTT
1 TACTAAAAATTT
621276 CAATTGGCGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 7 0.27
19 8 0.31
20 11 0.42
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (19 bp):
TACTAAAAATTTGGAAAGC
Found at i:621403 original size:23 final size:24
Alignment explanation
Indices: 621358--621403 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
621348 TCAAAAAATT
** *
621358 TTCAAAAGAAAAAATGGTCAAAAA
1 TTCAAAAGAAAAAATCCTAAAAAA
621382 TTCAAAA-AAAAAATCCTAAAAA
1 TTCAAAAGAAAAAATCCTAAAAA
621404 TTCTAGGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.65, C:0.11, G:0.07, T:0.17
Consensus pattern (24 bp):
TTCAAAAGAAAAAATCCTAAAAAA
Found at i:621976 original size:5 final size:5
Alignment explanation
Indices: 621966--622004 Score: 62
Period size: 5 Copynumber: 7.8 Consensus size: 5
621956 GTAAAATATG
621966 AAAAT AAAAT AAAAAT AAAAT AAAAT AAAAT AAAA- AAAA
1 AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
622005 AATCTGTGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.12
5 24 0.73
6 5 0.15
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:621992 original size:21 final size:21
Alignment explanation
Indices: 621966--622007 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
621956 GTAAAATATG
*
621966 AAAATAAAATAAAAATAAAAT
1 AAAATAAAATAAAAAAAAAAT
621987 AAAATAAAATAAAAAAAAAAT
1 AAAATAAAATAAAAAAAAAAT
622008 CTGTGATCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (21 bp):
AAAATAAAATAAAAAAAAAAT
Found at i:622006 original size:16 final size:17
Alignment explanation
Indices: 621966--622007 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
621956 GTAAAATATG
*
621966 AAAATAAAATAAAA-AT
1 AAAATAAAATAAAATAA
621982 AAAATAAAATAAAATAA
1 AAAATAAAATAAAATAA
621999 AAAA-AAAAT
1 AAAATAAAAT
622008 CTGTGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (17 bp):
AAAATAAAATAAAATAA
Found at i:622898 original size:3 final size:3
Alignment explanation
Indices: 622892--622917 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
622882 CAACAACGAC
622892 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
622918 CAACATAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:623183 original size:2 final size:2
Alignment explanation
Indices: 623178--623211 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
623168 ACACACACAC
623178 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
623212 CTTAAGCTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:624856 original size:21 final size:20
Alignment explanation
Indices: 624831--624904 Score: 71
Period size: 20 Copynumber: 3.5 Consensus size: 20
624821 TTATGCTCTC
624831 TTTTTCTTTTCTTT-TCCTTT
1 TTTTTC-TTTCTTTCTCCTTT
624851 TGTTTTCTTTCTTTCTCCTTT
1 T-TTTTCTTTCTTTCTCCTTT
*
624872 TTTTTCCCCTTTTTTTCT-CTTT
1 TTTTT---CTTTCTTTCTCCTTT
*
624894 TTTTTTTTTCT
1 TTTTTCTTTCT
624905 GAATGGGTAC
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
19 4 0.09
20 12 0.26
21 12 0.26
22 9 0.20
23 9 0.20
ACGTcount: A:0.00, C:0.22, G:0.01, T:0.77
Consensus pattern (20 bp):
TTTTTCTTTCTTTCTCCTTT
Found at i:624897 original size:10 final size:10
Alignment explanation
Indices: 624826--624897 Score: 51
Period size: 10 Copynumber: 7.0 Consensus size: 10
624816 TTTCTTTATG
*
624826 CTCTCTTTTT
1 CTCTTTTTTT
624836 CT-TTTCTTTT
1 CTCTTT-TTTT
624846 C-CTTTTGTTT
1 CTCTTTT-TTT
*
624856 -TCTTTCTTT
1 CTCTTTTTTT
624865 CTCCTTTTTTTT
1 CT-C-TTTTTTT
*
624877 CCCCTTTTTTT
1 -CTCTTTTTTT
624888 CTCTTTTTTT
1 CTCTTTTTTT
624898 TTTTTCTGAA
Statistics
Matches: 49, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
9 6 0.12
10 27 0.55
11 8 0.16
12 7 0.14
13 1 0.02
ACGTcount: A:0.00, C:0.25, G:0.01, T:0.74
Consensus pattern (10 bp):
CTCTTTTTTT
Found at i:624898 original size:11 final size:11
Alignment explanation
Indices: 624831--624898 Score: 54
Period size: 11 Copynumber: 6.5 Consensus size: 11
624821 TTATGCTCTC
624831 TTTTTCT-TTT
1 TTTTTCTCTTT
*
624841 CTTTTC-CTTT
1 TTTTTCTCTTT
*
624851 TGTTT-TC-TT
1 TTTTTCTCTTT
*
624860 TCTTTCTCCTTT
1 TTTTTCT-CTTT
* *
624872 TTTTTCCCCTT
1 TTTTTCTCTTT
624883 TTTTTCTCTTT
1 TTTTTCTCTTT
624894 TTTTT
1 TTTTT
624899 TTTTCTGAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 9
0.71 0.15 0.15
Matches are distributed among these distances:
9 6 0.14
10 13 0.30
11 18 0.41
12 7 0.16
ACGTcount: A:0.00, C:0.22, G:0.01, T:0.76
Consensus pattern (11 bp):
TTTTTCTCTTT
Found at i:627192 original size:3 final size:3
Alignment explanation
Indices: 627186--627232 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
627176 AGTAGTAGTA
627186 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GT
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GT
627233 AGAAGAGTAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.00, C:0.00, G:0.66, T:0.34
Consensus pattern (3 bp):
GTG
Found at i:631056 original size:2 final size:2
Alignment explanation
Indices: 631049--631073 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
631039 CAGTTTGATT
631049 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
631074 TTTAAAGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:633399 original size:2 final size:2
Alignment explanation
Indices: 633394--633421 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
633384 AAATTGAAAT
633394 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
633422 AAATGTTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:649324 original size:21 final size:22
Alignment explanation
Indices: 649292--649334 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
649282 ATTAAATATT
649292 AAATATTTTTTTATTT-TTTTA
1 AAATATTTTTTTATTTATTTTA
*
649313 AAAT-TTTATTTTCTTTATTTTA
1 AAATATTT-TTTTATTTATTTTA
649335 TATTTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 3 0.16
21 11 0.58
22 5 0.26
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (22 bp):
AAATATTTTTTTATTTATTTTA
Found at i:649380 original size:15 final size:15
Alignment explanation
Indices: 649352--649411 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
649342 TATTAATATT
**
649352 TATTTAAACATAAAA
1 TATTTAAATTTAAAA
649367 TATTTAAATTT-AAA
1 TATTTAAATTTAAAA
* *
649381 TAATTTGATAAATTAAAT
1 T-ATTT-A-AATTTAAAA
649399 TATTTAAATTTAA
1 TATTTAAATTTAA
649412 TTTAATAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
14 4 0.11
15 19 0.53
16 2 0.06
17 8 0.22
18 3 0.08
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (15 bp):
TATTTAAATTTAAAA
Found at i:649403 original size:26 final size:29
Alignment explanation
Indices: 649373--649439 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
649363 AAAATATTTA
*
649373 AATTTAAATAATTTGAT-A-AATTAAATT
1 AATTTAAATAATTTAATAATAATTAAATT
649400 -ATTTAAATTTAATTTAATAATAATTAAATT
1 AATTTAAA--TAATTTAATAATAATTAAATT
649430 GAATTTAAAT
1 -AATTTAAAT
649440 TTTATTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
26 7 0.21
28 8 0.24
29 1 0.03
30 10 0.30
32 7 0.21
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (29 bp):
AATTTAAATAATTTAATAATAATTAAATT
Found at i:649416 original size:11 final size:11
Alignment explanation
Indices: 649400--649450 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
649390 AAATTAAATT
649400 ATTTAAATTTA
1 ATTTAAATTTA
*
649411 ATTT-AATAATA
1 ATTTAAAT-TTA
*
649422 A-TTAAATTGA
1 ATTTAAATTTA
*
649432 ATTTAAATTTT
1 ATTTAAATTTA
649443 ATTTAAAT
1 ATTTAAAT
649451 GAATACTTAC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
10 7 0.22
11 25 0.78
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (11 bp):
ATTTAAATTTA
Found at i:650422 original size:22 final size:22
Alignment explanation
Indices: 650382--650423 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
650372 AATTTAAAAT
*
650382 TTTAATAATAATTATATATAAA
1 TTTAATAATAATTAAATATAAA
650404 TTTAATAA-AATTAAAATATA
1 TTTAATAATAATT-AAATATA
650424 TCTTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TTTAATAATAATTAAATATAAA
Found at i:667757 original size:2 final size:2
Alignment explanation
Indices: 667750--667781 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
667740 TGCTGGTTGG
667750 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
667782 GAGCAAGCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:669670 original size:60 final size:60
Alignment explanation
Indices: 669568--669691 Score: 212
Period size: 60 Copynumber: 2.1 Consensus size: 60
669558 GGTCCTATAT
* * *
669568 TTGGGTTAGTCGCTGGTAAACGAGGAAAGATCCATCAAAAGTCGAGGAATCGAGGCAATC
1 TTGGGTTACTCGCTGGTAAACAAGGAAAGATCCATCAAAAGTCGAGGAATCAAGGCAATC
*
669628 TTGGTTTACTCGCTGGTAAACAAGGAAAGATCCATCAAAAGTCGAGGAATCAAGGCAATC
1 TTGGGTTACTCGCTGGTAAACAAGGAAAGATCCATCAAAAGTCGAGGAATCAAGGCAATC
669688 TTGG
1 TTGG
669692 ATCCTACGAT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (60 bp):
TTGGGTTACTCGCTGGTAAACAAGGAAAGATCCATCAAAAGTCGAGGAATCAAGGCAATC
Found at i:672296 original size:2 final size:2
Alignment explanation
Indices: 672289--672319 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
672279 TTTCCCTTCA
672289 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
672320 AACATGCAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:688832 original size:13 final size:13
Alignment explanation
Indices: 688814--688842 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
688804 GAGCAACTCG
688814 ATGTCAATGTTCA
1 ATGTCAATGTTCA
688827 ATGTCAATGTTCA
1 ATGTCAATGTTCA
688840 ATG
1 ATG
688843 AATTTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (13 bp):
ATGTCAATGTTCA
Found at i:703336 original size:82 final size:82
Alignment explanation
Indices: 703244--703399 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 82
703234 CATTCAAAAA
** *
703244 TTTCTAGCTTCTACATGAGACTGAAATTTTGGA-ACAAACACACACGTGGGCAACTTGTTTGCAA
1 TTTCTAGCTTCTACATGAGACTGAAATTTTGGAGA-AAACACACACGTCAGCAACTTGTTAGCAA
*
703308 AAATTAACACACAAAATT
65 AAAGTAACACACAAAATT
* *
703326 TTTCTAGCTTCTACATGAGACTGAAATTTTGGAGAAAACATACACTTCAGCAACTTGTTAGCAAA
1 TTTCTAGCTTCTACATGAGACTGAAATTTTGGAGAAAACACACACGTCAGCAACTTGTTAGCAAA
703391 AAGTAACAC
66 AAGTAACAC
703400 GTAAAGAGCT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
82 66 0.99
83 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (82 bp):
TTTCTAGCTTCTACATGAGACTGAAATTTTGGAGAAAACACACACGTCAGCAACTTGTTAGCAAA
AAGTAACACACAAAATT
Found at i:704486 original size:36 final size:37
Alignment explanation
Indices: 704438--704507 Score: 115
Period size: 36 Copynumber: 1.9 Consensus size: 37
704428 CATTAATATG
704438 CCGATTAGCCACAAAACCTAGAAGAGAATATGAAGTA
1 CCGATTAGCCACAAAACCTAGAAGAGAATATGAAGTA
* *
704475 CCGATT-GCCACAAAACCTAGAGGATAATATGAA
1 CCGATTAGCCACAAAACCTAGAAGAGAATATGAA
704508 CTATCTCCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 25 0.81
37 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.17
Consensus pattern (37 bp):
CCGATTAGCCACAAAACCTAGAAGAGAATATGAAGTA
Found at i:707101 original size:20 final size:22
Alignment explanation
Indices: 707061--707105 Score: 76
Period size: 20 Copynumber: 2.1 Consensus size: 22
707051 AATTTAAAAT
707061 TTTAATAAAAATAATAAATATA
1 TTTAATAAAAATAATAAATATA
707083 TTTAAT-AAAATAA-AAATATA
1 TTTAATAAAAATAATAAATATA
707103 TTT
1 TTT
707106 TATTATCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 10 0.43
21 7 0.30
22 6 0.26
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTAATAAAAATAATAAATATA
Found at i:707107 original size:21 final size:23
Alignment explanation
Indices: 707059--707107 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 23
707049 ATAATTTAAA
707059 ATTTTAATAAAAATAATAAATAT
1 ATTTTAATAAAAATAATAAATAT
707082 A-TTTAAT-AAAATAA-AAATAT
1 ATTTTAATAAAAATAATAAATAT
707102 ATTTTA
1 ATTTTA
707108 TTATCAACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.28
21 11 0.44
22 6 0.24
23 1 0.04
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
ATTTTAATAAAAATAATAAATAT
Found at i:707191 original size:18 final size:19
Alignment explanation
Indices: 707122--707191 Score: 74
Period size: 18 Copynumber: 3.7 Consensus size: 19
707112 CAACATAAAT
707122 TATAATATATAAT-TTTTA
1 TATAATATATAATATTTTA
* **
707140 TATAAAATATAATATAATA
1 TATAATATATAATATTTTA
707159 TATAA-ATTATTAATATTTTA
1 TATAATA-TA-TAATATTTTA
707179 TATAATATA-AATA
1 TATAATATATAATA
707192 CATAAATTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
18 17 0.40
19 10 0.23
20 15 0.35
21 1 0.02
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATAATATATAATATTTTA
Found at i:707710 original size:22 final size:20
Alignment explanation
Indices: 707678--707718 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
707668 TAATAATATT
707678 AATTTAATATAAAAATTTTA
1 AATTTAATATAAAAATTTTA
*
707698 AATTATAATTATAATAATTTT
1 AATT-TAA-TATAAAAATTTT
707719 TTTATTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 3 0.17
22 11 0.61
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
AATTTAATATAAAAATTTTA
Found at i:708829 original size:6 final size:6
Alignment explanation
Indices: 708818--708847 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
708808 CAACCTTCCC
708818 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
708848 AACAAGGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:709074 original size:22 final size:21
Alignment explanation
Indices: 709019--709078 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
709009 TTTTTATTTA
* *
709019 AATAATATTATATAATGATATT
1 AATAAAATTAT-TAATTATATT
* *
709041 ATTAAAA-AATTAATTATATAT
1 AATAAAATTATTAATTATAT-T
709062 AATAAAATTATTAATTA
1 AATAAAATTATTAATTA
709079 AAAAAGATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
20 8 0.27
21 9 0.30
22 13 0.43
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
AATAAAATTATTAATTATATT
Found at i:719880 original size:15 final size:16
Alignment explanation
Indices: 719860--719890 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
719850 TTTTGTATTG
719860 AATTTAAT-ATTATCA
1 AATTTAATGATTATCA
719875 AATTTAATGATTATCA
1 AATTTAATGATTATCA
719891 TTTTTTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (16 bp):
AATTTAATGATTATCA
Found at i:733707 original size:18 final size:17
Alignment explanation
Indices: 733672--733712 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
733662 GGAAAAATTT
*
733672 TTTTTTTAATTTTTTTA
1 TTTTTTTAATTTTATTA
*
733689 TTTTTTTGATTATTATTA
1 TTTTTTTAATT-TTATTA
733707 TTTTTT
1 TTTTTT
733713 GCTACTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTTTTAATTTTATTA
Found at i:734166 original size:29 final size:28
Alignment explanation
Indices: 734134--734264 Score: 95
Period size: 29 Copynumber: 4.6 Consensus size: 28
734124 TAAACCCTTC
* *
734134 AAACCTTAAAATCAAAACCTCAAATCTCA
1 AAACCCTAAAA-CAAAACCTCAAACCTCA
** * *
734163 AAACCCTAAAACTAATTCCT-AATCACTCC
1 AAACCCTAAAAC-AAAACCTCAAAC-CTCA
* * * *
734192 AAACCTTGAAACTAAACTTCAAACCTC-
1 AAACCCTAAAACAAAACCTCAAACCTCA
* *
734219 AAACCCTAAAATCAAATCCCCAAACCTCA
1 AAACCCTAAAA-CAAAACCTCAAACCTCA
734248 AAACCCTAAAACTAAAA
1 AAACCCTAAAAC-AAAA
734265 TCCTAAAATC
Statistics
Matches: 76, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
27 9 0.12
28 22 0.29
29 45 0.59
ACGTcount: A:0.49, C:0.31, G:0.01, T:0.19
Consensus pattern (28 bp):
AAACCCTAAAACAAAACCTCAAACCTCA
Found at i:734258 original size:8 final size:8
Alignment explanation
Indices: 734247--734295 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
734237 CCCAAACCTC
*
734247 AAAACCCT
1 AAAATCCT
734255 AAAA--CT
1 AAAATCCT
734261 AAAATCCT
1 AAAATCCT
734269 AAAATCCT
1 AAAATCCT
734277 -AAATCC-
1 AAAATCCT
*
734283 AAAATCTT
1 AAAATCCT
734291 AAAAT
1 AAAAT
734296 TTGAAATGCT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
6 6 0.17
7 11 0.31
8 19 0.53
ACGTcount: A:0.55, C:0.22, G:0.00, T:0.22
Consensus pattern (8 bp):
AAAATCCT
Found at i:734277 original size:22 final size:22
Alignment explanation
Indices: 734247--734295 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
734237 CCCAAACCTC
* *
734247 AAAACCCTAAAACTAAAATCCT
1 AAAATCCTAAAACCAAAATCCT
* *
734269 AAAATCCTAAATCCAAAATCTT
1 AAAATCCTAAAACCAAAATCCT
734291 AAAAT
1 AAAAT
734296 TTGAAATGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.55, C:0.22, G:0.00, T:0.22
Consensus pattern (22 bp):
AAAATCCTAAAACCAAAATCCT
Found at i:735989 original size:21 final size:19
Alignment explanation
Indices: 735949--735986 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
735939 AAATAGATAA
735949 TGAAAAAAAAACATTTTCT
1 TGAAAAAAAAACATTTTCT
735968 TGAAAAAAATAA-ATTTTCT
1 TGAAAAAAA-AACATTTTCT
735987 CTTAACATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (19 bp):
TGAAAAAAAAACATTTTCT
Found at i:740906 original size:1 final size:1
Alignment explanation
Indices: 740902--740927 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
740892 AATGGGGCAT
740902 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
740928 GACATCTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:743466 original size:109 final size:109
Alignment explanation
Indices: 743103--743466 Score: 396
Period size: 109 Copynumber: 3.3 Consensus size: 109
743093 AAACCTTCAA
* * * * **
743103 CATAAATTCGATTCGA-GGTATTGTCCCGATCGATTCATTATTTTTAACTTACGTTGTTATCTTG
1 CATAAATTCGATTC-ACGATGTTATCCCGATCGATTTATTATTTTTAACTTACGTTGTTATCCCG
* *
743167 ATCGATTTTGTAAGACCTCTGGGTATGATTTCTAAGACCTCTGGG
65 ATCGATTTTGTAAGACCTCCGGGTATGATTTCTAAGACCTCTGAG
** **
743212 CATAAATTCGATTCGTGATGTTATTTCGATCGATTT-TTAGTTTTTTAACTT--GTAGTGTTATC
1 CATAAATTCGATTCACGATGTTATCCCGATCGATTTATTA--TTTTTAACTTACGT--TGTTATC
* *
743274 CCGATCGATTTTGTAAGACCTTCGGGTATGATTTCTAAGACCTCTGTG
62 CCGATCGATTTTGTAAGACCTCCGGGTATGATTTCTAAGACCTCTGAG
* * * ** * *
743322 CATAAATTCAATTTACGATGTTGTCCCGATCGATTTATTATTTTCGACTTACGTTGTTATCGCGT
1 CATAAATTCGATTCACGATGTTATCCCGATCGATTTATTATTTTTAACTTACGTTGTTATCCCGA
* * ** *
743387 TTGATTCTGTAAGACCTCCAAGCATGATTTCTAAGACCTCCT-AG
66 TCGATTTTGTAAGACCTCCGGGTATGATTTCTAAGACCT-CTGAG
*
743431 CATAAATTCGATTCACGATGTTATCTCGATCGATTT
1 CATAAATTCGATTCACGATGTTATCCCGATCGATTT
743467 TTGTAAGACC
Statistics
Matches: 212, Mismatches: 34, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
108 5 0.02
109 111 0.52
110 91 0.43
111 5 0.02
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (109 bp):
CATAAATTCGATTCACGATGTTATCCCGATCGATTTATTATTTTTAACTTACGTTGTTATCCCGA
TCGATTTTGTAAGACCTCCGGGTATGATTTCTAAGACCTCTGAG
Found at i:743487 original size:74 final size:74
Alignment explanation
Indices: 743394--743535 Score: 214
Period size: 74 Copynumber: 1.9 Consensus size: 74
743384 CGTTTGATTC
* *
743394 TGTAAGACCTCCAAGCATGATTTCTAAGACCTCCTAGCATAAATTCGATTCACGATGTTATCTCG
1 TGTAAGACCTCCAAGCATGATTTCTAAGACCTCCGAGCATAAATTCGATTCACGATGTTATCCCG
743459 ATCGATTTT
66 ATCGATTTT
* * * *
743468 TGTAAGACCTCC-GGACATGATTTCTAAGACTTTCGAGCATAAATTTGATTCACGATGTTATCCC
1 TGTAAGACCTCCAAG-CATGATTTCTAAGACCTCCGAGCATAAATTCGATTCACGATGTTATCCC
743532 GATC
65 GATC
743536 AAATTTTAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 1 0.02
74 60 0.98
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (74 bp):
TGTAAGACCTCCAAGCATGATTTCTAAGACCTCCGAGCATAAATTCGATTCACGATGTTATCCCG
ATCGATTTT
Found at i:743716 original size:110 final size:112
Alignment explanation
Indices: 743574--743810 Score: 286
Period size: 111 Copynumber: 2.1 Consensus size: 112
743564 GTCTCAATTG
* *
743574 ATTCTGTAAGACCT-TCGAGCATGGTTTCTAAGACCTCCAG-GCATAAATTCGATTTGCGGTGTT
1 ATTCTGTAAGACCTCTCGAGCATGGTTTCTAAGACCT-CAGAGCATAAATTCGATTTGCAGCGTT
* * * * * *
743637 ATCTCGATCGATTCA-TTATTCTTTTAACTTGCGATGTTGTCCCAGTCA
65 ATCCCAATCGATTCATTTATT-TTTTAACTTACAATGATGTCCCAATCA
* * * *
743685 ATTCTGTAAGACCTCTGGA-CAT-GTTTTTAAGACCTCTGAGTATAAATTCGATTTGCAGCGTTA
1 ATTCTGTAAGACCTCTCGAGCATGGTTTCTAAGACCTCAGAGCATAAATTCGATTTGCAGCGTTA
* *
743748 TCCCAATCGATTCATTTTATTTTTTGATTTACAATGATGTCCCAATCA
66 TCCCAATCGATTCA-TTTATTTTTTAACTTACAATGATGTCCCAATCA
743796 ATTCTGTAAGACCTC
1 ATTCTGTAAGACCTC
743811 CAGACATAAA
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
109 2 0.02
110 45 0.42
111 53 0.49
112 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (112 bp):
ATTCTGTAAGACCTCTCGAGCATGGTTTCTAAGACCTCAGAGCATAAATTCGATTTGCAGCGTTA
TCCCAATCGATTCATTTATTTTTTAACTTACAATGATGTCCCAATCA
Found at i:744070 original size:197 final size:198
Alignment explanation
Indices: 743602--744116 Score: 583
Period size: 197 Copynumber: 2.6 Consensus size: 198
743592 GCATGGTTTC
* * * *
743602 TAAGACCTCCAGGCATAAATTCGATTTGCGGTGTTATCTCGATCGATTCATTATTCTTTTAACTT
1 TAAGACCTCCAAGCATAAATTTGATTTGCGGTGTTATCCCGATCGATTCATTATT-TTTTGACTT
* * * * **
743667 GCGATGTTGTCCCAGTCAATTCTGTAAGAC-CTCTGGACATGTTTTTAAGACCTCTGAGTATAAA
65 GCGATGTTGTCTCAGTCAATTCTGTAAGACTTTC-GGACATATTTTTAAGACCTCCGAACATAAA
* * * * * *
743731 TTCGATTTGCAGCGTTATCCCAATCGATTCATTTTATTTTTTGATTTACAATGATGTCCCAATCA
129 TTCGATTCGCAACGTTATCCCAATCGATT-ATTTGATTTTTCGACTTACAATGATATCCCAATCA
743796 ATTCTG
193 ATTCTG
* * *
743802 TAAGACCTCC-AGACATAAATTTGATTCGCGGTATTATCCCAATCGATTCATTATTTTTTGACTT
1 TAAGACCTCCAAG-CATAAATTTGATTTGCGGTGTTATCCCGATCGATTCATTATTTTTTGACTT
* * * *
743866 GCGATGTTATCTC-GTCGATTCTGTAAGACTTTCGGATATAATTTTTAAGACCTCCGAACATCAA
65 GCGATGTTGTCTCAGTCAATTCTGTAAGACTTTCGGACAT-ATTTTTAAGACCTCCGAACATAAA
* * * * * * *
743930 TTCGATTCGCAATGTTATCCCGATCGATT-TTTGATTTTTCGACTTGCGATGCTATCCCAGTCGA
129 TTCGATTCGCAACGTTATCCCAATCGATTATTTGATTTTTCGACTTACAATGATATCCCAATCAA
743994 TTCTG
194 TTCTG
* * * * *
743999 TAAGACCTCCAAGCATAAATTTGATTTACGGTGTTGTCCCGATCAATTCTTTATTTTTTGACTTA
1 TAAGACCTCCAAGCATAAATTTGATTTGCGGTGTTATCCCGATCGATTCATTATTTTTTGACTTG
* *
744064 CGATGTTGTCTCAGCCAATT-TGGTAAGACTTTC-GAGCATGATTCTTAAGACCT
66 CGATGTTGTCTCAGTCAATTCT-GTAAGACTTTCGGA-CAT-ATTTTTAAGACCT
744117 TCAGGCATGA
Statistics
Matches: 264, Mismatches: 44, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
197 99 0.38
198 52 0.20
199 66 0.25
200 47 0.18
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38
Consensus pattern (198 bp):
TAAGACCTCCAAGCATAAATTTGATTTGCGGTGTTATCCCGATCGATTCATTATTTTTTGACTTG
CGATGTTGTCTCAGTCAATTCTGTAAGACTTTCGGACATATTTTTAAGACCTCCGAACATAAATT
CGATTCGCAACGTTATCCCAATCGATTATTTGATTTTTCGACTTACAATGATATCCCAATCAATT
CTG
Found at i:744124 original size:22 final size:22
Alignment explanation
Indices: 744099--744143 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
744089 AGACTTTCGA
*
744099 GCATGATTCTTAAGACCTTCAG
1 GCATGATTCTTAAGACCTCCAG
744121 GCATGATTCTTAAGACCTCCAG
1 GCATGATTCTTAAGACCTCCAG
744143 G
1 G
744144 TAAAATTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (22 bp):
GCATGATTCTTAAGACCTCCAG
Found at i:744911 original size:14 final size:14
Alignment explanation
Indices: 744875--744901 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
744865 CATACCAAAT
744875 AGAAACAAAAAAAC
1 AGAAACAAAAAAAC
744889 AGAAACAAAAAAA
1 AGAAACAAAAAAA
744902 TAAAGACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.11, G:0.07, T:0.00
Consensus pattern (14 bp):
AGAAACAAAAAAAC
Found at i:746123 original size:15 final size:15
Alignment explanation
Indices: 746098--746154 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
746088 CCTTAAACCA
*
746098 AAAAATCAAAACCCC
1 AAAACTCAAAACCCC
* *
746113 AAACCTCAAAACCCT
1 AAAACTCAAAACCCC
*
746128 AAAACT-AAAACCCT
1 AAAACTCAAAACCCC
746142 AAAA-TCCAAAACC
1 AAAACT-CAAAACC
746155 TTAAAATTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
13 1 0.03
14 12 0.33
15 23 0.64
ACGTcount: A:0.56, C:0.33, G:0.00, T:0.11
Consensus pattern (15 bp):
AAAACTCAAAACCCC
Found at i:746139 original size:14 final size:14
Alignment explanation
Indices: 746105--746160 Score: 58
Period size: 15 Copynumber: 3.9 Consensus size: 14
746095 CCAAAAAATC
* *
746105 AAAACCCCAAACCT
1 AAAACCCTAAAACT
746119 CAAAACCCTAAAACT
1 -AAAACCCTAAAACT
*
746134 AAAACCCTAAAATCC
1 AAAACCCTAAAA-CT
*
746149 AAAACCTTAAAA
1 AAAACCCTAAAA
746161 TTCTAAATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
14 12 0.33
15 24 0.67
ACGTcount: A:0.55, C:0.32, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAACCCTAAAACT
Found at i:746159 original size:15 final size:15
Alignment explanation
Indices: 746119--746161 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
746109 CCCCAAACCT
746119 CAAAACCCTAAAA-C
1 CAAAACCCTAAAATC
*
746133 TAAAACCCTAAAATC
1 CAAAACCCTAAAATC
*
746148 CAAAACCTTAAAAT
1 CAAAACCCTAAAAT
746162 TCTAAATTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.16
Consensus pattern (15 bp):
CAAAACCCTAAAATC
Found at i:751842 original size:18 final size:17
Alignment explanation
Indices: 751805--751843 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
751795 ATTACTTTTT
*
751805 ATTTTTTTTGTAACCTA
1 ATTTTTTTTGTAACCCA
*
751822 ATTTTTTTTAGTATCCCA
1 ATTTTTTTT-GTAACCCA
751840 ATTT
1 ATTT
751844 GGAGAAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.23, C:0.13, G:0.05, T:0.59
Consensus pattern (17 bp):
ATTTTTTTTGTAACCCA
Found at i:752267 original size:16 final size:17
Alignment explanation
Indices: 752233--752282 Score: 68
Period size: 16 Copynumber: 3.1 Consensus size: 17
752223 TGAGTGCTTT
752233 AAAATTATAAGTAATAA
1 AAAATTATAAGTAATAA
*
752250 AAAATTATAATTAA-AA
1 AAAATTATAAGTAATAA
*
752266 AAAATTATTA-TAATAA
1 AAAATTATAAGTAATAA
752282 A
1 A
752283 TCTTTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
15 3 0.10
16 14 0.47
17 13 0.43
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAATTATAAGTAATAA
Found at i:752277 original size:19 final size:17
Alignment explanation
Indices: 752233--752279 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
752223 TGAGTGCTTT
* *
752233 AAAATTATAAGTAATAA
1 AAAATTATAATTAAAAA
752250 AAAATTATAATTAAAAA
1 AAAATTATAATTAAAAA
752267 AAATTATTATAAT
1 AAA--ATTATAAT
752280 AAATCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 18 0.69
19 8 0.31
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAATTATAATTAAAAA
Found at i:755183 original size:22 final size:22
Alignment explanation
Indices: 755142--755184 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
755132 GCATTTGACA
*
755142 GGAATTTATTGGCTTCTTTTCC
1 GGAATTTACTGGCTTCTTTTCC
* *
755164 GGAATTTACTGGGTTTTTTTC
1 GGAATTTACTGGCTTCTTTTC
755185 TGCTGGTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.51
Consensus pattern (22 bp):
GGAATTTACTGGCTTCTTTTCC
Found at i:772566 original size:7 final size:7
Alignment explanation
Indices: 772554--772583 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
772544 AGAATAAAAG
772554 TTCACTC
1 TTCACTC
772561 TTCACTC
1 TTCACTC
772568 TTCACTC
1 TTCACTC
*
772575 CTCACTC
1 TTCACTC
772582 TT
1 TT
772584 ATTTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.43
Consensus pattern (7 bp):
TTCACTC
Found at i:778539 original size:25 final size:25
Alignment explanation
Indices: 778505--778553 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
778495 GCTGGCAATG
*
778505 AAAACAACATATACTTGAATAATAC
1 AAAACAACATATACATGAATAATAC
*
778530 AAAACAACATTTACATGAATAATA
1 AAAACAACATATACATGAATAATA
778554 TATATCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.57, C:0.14, G:0.04, T:0.24
Consensus pattern (25 bp):
AAAACAACATATACATGAATAATAC
Found at i:780518 original size:36 final size:36
Alignment explanation
Indices: 780478--780549 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
780468 AACAAAGACA
*
780478 ATGAATTATTCTAAACTGATATCGTCCCTTTTTTGT
1 ATGAATTATTCTAAACTGATATCATCCCTTTTTTGT
780514 ATGAATTATTCTAAACTGATATCATCCCTTTTTTGT
1 ATGAATTATTCTAAACTGATATCATCCCTTTTTTGT
780550 GGAGAAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (36 bp):
ATGAATTATTCTAAACTGATATCATCCCTTTTTTGT
Found at i:781887 original size:3 final size:3
Alignment explanation
Indices: 781879--781925 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
781869 ATTATTTTTA
781879 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
781926 ATAGTTTCGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:782169 original size:28 final size:29
Alignment explanation
Indices: 782118--782188 Score: 85
Period size: 28 Copynumber: 2.4 Consensus size: 29
782108 CATTTTTTTT
782118 AAACCTTAAACCCTACAAACCCTAAAA-CTA
1 AAACCTTAAACCC-ACAAACCCTAAAATC-A
*
782148 AAA-CTCTAAACCC-CAAATCCTAAAATCA
1 AAACCT-TAAACCCACAAACCCTAAAATCA
782176 AAACCTTAAACCC
1 AAACCTTAAACCC
782189 TCCAAACCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
28 22 0.59
29 5 0.14
30 10 0.27
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (29 bp):
AAACCTTAAACCCACAAACCCTAAAATCA
Found at i:783296 original size:20 final size:20
Alignment explanation
Indices: 783271--783329 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
783261 CAGGTCCGGG
783271 CCCGGATCAATTGGGCCTGA
1 CCCGGATCAATTGGGCCTGA
783291 CCCGGATCAATTGGGCCTGA
1 CCCGGATCAATTGGGCCTGA
* * *
783311 CCCAGATCATTTAGGCCTG
1 CCCGGATCAATTGGGCCTG
783330 GCCCAAATGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.20, C:0.31, G:0.27, T:0.22
Consensus pattern (20 bp):
CCCGGATCAATTGGGCCTGA
Found at i:783500 original size:3 final size:3
Alignment explanation
Indices: 783492--783520 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
783482 AGTTATATAT
783492 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
783521 TTTGTAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:784083 original size:31 final size:31
Alignment explanation
Indices: 784014--784084 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
784004 GGAAATTTCC
* *
784014 AGATTCCGGCGAAAATTCCGGCGACATTTGA
1 AGATTCCGGCGAAAATTCCGGCGAAACTTGA
**
784045 ATTTTCCGGC-ACAAATTCCGGCGAAACTTGA
1 AGATTCCGGCGA-AAATTCCGGCGAAACTTGA
784076 AGATTCCGG
1 AGATTCCGG
784085 TGACCAACCC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 1 0.03
31 32 0.97
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (31 bp):
AGATTCCGGCGAAAATTCCGGCGAAACTTGA
Found at i:784163 original size:19 final size:19
Alignment explanation
Indices: 784139--784185 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
784129 TTCCGGCCAT
784139 ATTCCGGCAAAAATTCCAG
1 ATTCCGGCAAAAATTCCAG
* * *
784158 ATTCCGGCGACATTTCCAG
1 ATTCCGGCAAAAATTCCAG
*
784177 AATCCGGCA
1 ATTCCGGCA
784186 CCGGTGTTCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (19 bp):
ATTCCGGCAAAAATTCCAG
Found at i:784540 original size:1 final size:1
Alignment explanation
Indices: 784503--784530 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
784493 CCGTTCCAGG
784503 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
784531 GAATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:785159 original size:152 final size:152
Alignment explanation
Indices: 784750--785189 Score: 801
Period size: 151 Copynumber: 2.9 Consensus size: 152
784740 TTTTTTCTTC
* *
784750 TTCTTTAATTAATCCGACGACGGAGCCTCTACAAGTGAAACAGTAGTTTTTCTTGCATACTCTTG
1 TTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCTTG
784815 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCAATA
66 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCAATA
784880 ATTAATTGGATGATTTTGTATT
131 ATTAATTGGATGATTTTGTATT
784902 TT-TTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCTTG
1 TTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCTTG
*
784966 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTTAATTGAGAATAATTTCCAATA
66 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCAATA
*
785031 ATTAATTGGATGATTTTGTTTT
131 ATTAATTGGATGATTTTGTATT
* *
785053 TTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
1 TTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCTTG
*
785118 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCAACA
66 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCAATA
*
785183 ACTAATT
131 ATTAATT
785190 ACTTGGTAAA
Statistics
Matches: 278, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
151 147 0.53
152 131 0.47
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (152 bp):
TTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCTTG
AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCAATA
ATTAATTGGATGATTTTGTATT
Found at i:791035 original size:21 final size:19
Alignment explanation
Indices: 791010--791062 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 19
791000 TATTTTTTTG
791010 TTAATTATTTTAATATAAA
1 TTAATTATTTTAATATAAA
*
791029 TTTTAATATATTTAAATATAAA
1 --TTAAT-TATTTTAATATAAA
*
791051 ATAATTATTTTA
1 TTAATTATTTTA
791063 CTTTTGTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 6 0.21
20 4 0.14
21 5 0.18
22 13 0.46
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAATTATTTTAATATAAA
Found at i:791041 original size:22 final size:21
Alignment explanation
Indices: 791010--791050 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
791000 TATTTTTTTG
*
791010 TTAATTATTTTAATATAAATT
1 TTAATTATTTAAATATAAATT
791031 TTAATATATTTAAATATAAA
1 TTAAT-TATTTAAATATAAA
791051 ATAATTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTAATTATTTAAATATAAATT
Found at i:810518 original size:15 final size:15
Alignment explanation
Indices: 810498--810527 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
810488 TATTATTCTT
810498 TTTTATTATAAAATA
1 TTTTATTATAAAATA
*
810513 TTTTATTATCAAATA
1 TTTTATTATAAAATA
810528 GTAAATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTTATTATAAAATA
Found at i:811100 original size:28 final size:29
Alignment explanation
Indices: 811031--811136 Score: 74
Period size: 28 Copynumber: 3.6 Consensus size: 29
811021 GGTATGGAAG
* * *
811031 GTTTAGGATTTTGATTTT-AGAGTTTGGAGA
1 GTTTAGGGTTTTGGTTTTAAGAATTT-GA-A
* *
811061 TTTTAGAGTTTTGGTTTTAA-AATTTGAA
1 GTTTAGGGTTTTGGTTTTAAGAATTTGAA
* **
811089 GTTTAGGGTTTT-GATTTAAGGGTTTGAA
1 GTTTAGGGTTTTGGTTTTAAGAATTTGAA
*
811117 TTTTAGGGATTTTGGGTTTT
1 GTTTAGGG-TTTT-GGTTTT
811137 GGGGTTTGGA
Statistics
Matches: 59, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
27 6 0.10
28 24 0.41
29 6 0.10
30 18 0.31
31 5 0.08
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (29 bp):
GTTTAGGGTTTTGGTTTTAAGAATTTGAA
Found at i:811110 original size:14 final size:14
Alignment explanation
Indices: 811032--811176 Score: 60
Period size: 14 Copynumber: 9.9 Consensus size: 14
811022 GTATGGAAGG
*
811032 TTTAGGATTTTGAT
1 TTTAGGGTTTTGAT
* *
811046 TTTAGAGTTTGGAGAT
1 TTTAGGGTTT--TGAT
* *
811062 TTTAGAGTTTTGGT
1 TTTAGGGTTTTGAT
*** *
811076 TTTA-AAATTTGAAG
1 TTTAGGGTTTTG-AT
811090 TTTAGGGTTTTGAT
1 TTTAGGGTTTTGAT
*
811104 TTAAGGG-TTTGAAT
1 TTTAGGGTTTTG-AT
*
811118 TTTAGGGATTTTGGGT
1 TTTAGGG-TTTT-GAT
* *
811134 TTTGGGGTTTGGAT
1 TTTAGGGTTTTGAT
* * *
811148 TTAAAGGTTATGAGGT
1 TTTAGGGTTTTGA--T
811164 TTTAGGGTTTTGA
1 TTTAGGGTTTTGA
811177 AATTTAAGAA
Statistics
Matches: 94, Mismatches: 27, Indels: 18
0.68 0.19 0.13
Matches are distributed among these distances:
13 9 0.10
14 43 0.46
15 7 0.07
16 34 0.36
17 1 0.01
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTTGAT
Found at i:811538 original size:22 final size:22
Alignment explanation
Indices: 811513--811562 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
811503 ATTAAAATAA
*
811513 TTAAATATTTATCCTAACAAAT
1 TTAAAAATTTATCCTAACAAAT
* *
811535 TTAAAAATTTATCGTAATAAAT
1 TTAAAAATTTATCCTAACAAAT
*
811557 ATAAAA
1 TTAAAA
811563 TATACTCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (22 bp):
TTAAAAATTTATCCTAACAAAT
Found at i:811598 original size:25 final size:25
Alignment explanation
Indices: 811557--811607 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
811547 CGTAATAAAT
*
811557 ATAAAATATACTCAAAATAA-CAAAA
1 ATAAAATATACT-AAAAAAATCAAAA
811582 ATAATAATATA-TAAAAAAATCAAAA
1 ATAA-AATATACTAAAAAAATCAAAA
811607 A
1 A
811608 AAATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 6 0.26
25 11 0.48
26 6 0.26
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.22
Consensus pattern (25 bp):
ATAAAATATACTAAAAAAATCAAAA
Found at i:812694 original size:3 final size:3
Alignment explanation
Indices: 812686--812711 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
812676 TATTAACTAA
812686 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
812712 ATATGCCCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:814077 original size:13 final size:12
Alignment explanation
Indices: 814059--814108 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
814049 TTTAATTTGG
814059 ATTAAATTTAGAT
1 ATTAAATTTA-AT
*
814072 ATTAAATATATAT
1 ATTAAATTTA-AT
814085 ATTAAA-TTAA-
1 ATTAAATTTAAT
*
814095 ATTAAATTTTAT
1 ATTAAATTTAAT
814107 AT
1 AT
814109 CAAAAAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 6 0.19
11 4 0.13
12 4 0.13
13 17 0.55
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (12 bp):
ATTAAATTTAAT
Found at i:814321 original size:16 final size:16
Alignment explanation
Indices: 814290--814323 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
814280 TAACTGAATC
*
814290 AATAAAATTTAATTAA
1 AATAAAATTCAATTAA
*
814306 AATAAAATTCACTTAA
1 AATAAAATTCAATTAA
814322 AA
1 AA
814324 GAGTTTATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (16 bp):
AATAAAATTCAATTAA
Found at i:828923 original size:17 final size:18
Alignment explanation
Indices: 828882--828930 Score: 64
Period size: 17 Copynumber: 2.7 Consensus size: 18
828872 ATGATACAAT
828882 ATTAAAATAATTTAATATAA
1 ATTAAAAT--TTTAATATAA
*
828902 TTTAAAATTTTAATA-AA
1 ATTAAAATTTTAATATAA
828919 ATTAAAATTTTA
1 ATTAAAATTTTA
828931 TATTTTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 13 0.48
18 7 0.26
20 7 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTAAAATTTTAATATAA
Found at i:829881 original size:32 final size:32
Alignment explanation
Indices: 829845--829908 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
829835 ATACATCCAA
*
829845 GACAAAAAAGA-AAAAGGAAATTAAGAAATTTC
1 GACAAAAAACATAAAA-GAAATTAAGAAATTTC
** *
829877 GACAATGAACATAAAAGAAATTAAGAACTTTC
1 GACAAAAAACATAAAAGAAATTAAGAAATTTC
829909 TATCACTTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 23 0.85
33 4 0.15
ACGTcount: A:0.58, C:0.09, G:0.14, T:0.19
Consensus pattern (32 bp):
GACAAAAAACATAAAAGAAATTAAGAAATTTC
Found at i:832915 original size:45 final size:45
Alignment explanation
Indices: 832866--832965 Score: 130
Period size: 45 Copynumber: 2.2 Consensus size: 45
832856 AAAAGGAGTA
** * *
832866 AATGGTCCTGTACCACCGATGCCTAATCTTCCTTCTCC-GGGAATG
1 AATGGTCCTGTACCACAAATGCCTAATCTTCCATCACCAGGG-ATG
* *
832911 AATGGTCCTGTTCCACAAATGCCTTATCTTCCATCACCAGGGATG
1 AATGGTCCTGTACCACAAATGCCTAATCTTCCATCACCAGGGATG
832956 AATGGTCCTG
1 AATGGTCCTG
832966 CCCATTTACC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
45 45 0.94
46 3 0.06
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
AATGGTCCTGTACCACAAATGCCTAATCTTCCATCACCAGGGATG
Found at i:834151 original size:5 final size:5
Alignment explanation
Indices: 834138--834196 Score: 64
Period size: 5 Copynumber: 11.0 Consensus size: 5
834128 ATACAGAATT
* *
834138 TTATA TTATG TTATA TTATA TTATA TGATA TATATA TATATA TATATA
1 TTATA TTATA TTATA TTATA TTATA TTATA T-TATA T-TATA T-TATA
834186 TATATA TTATA
1 T-TATA TTATA
834197 AGTAGACACT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
5 27 0.55
6 22 0.45
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.54
Consensus pattern (5 bp):
TTATA
Found at i:834172 original size:2 final size:2
Alignment explanation
Indices: 834149--834196 Score: 66
Period size: 2 Copynumber: 25.0 Consensus size: 2
834139 TATATTATGT
834149 TA TA T- TA TA T- TA TA TGA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
834190 TA T- TA TA
1 TA TA TA TA
834197 AGTAGACACT
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
1 3 0.07
2 37 0.88
3 2 0.05
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:849329 original size:45 final size:45
Alignment explanation
Indices: 849266--849369 Score: 154
Period size: 45 Copynumber: 2.3 Consensus size: 45
849256 TAATCATTTA
* * *
849266 TTTTAATCTTATCGTTAAAATAATTAATCTCATATCTATTATTAT
1 TTTTAATCTCATCATTAAAATAATTAATCTCATATCAATTATTAT
* *
849311 TTTTAATCTCATCATTAAAATAATTAATTTTATATCAATTATTAT
1 TTTTAATCTCATCATTAAAATAATTAATCTCATATCAATTATTAT
*
849356 TTTTAATCCCATCA
1 TTTTAATCTCATCA
849370 AAATTAATCT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.37, C:0.12, G:0.01, T:0.50
Consensus pattern (45 bp):
TTTTAATCTCATCATTAAAATAATTAATCTCATATCAATTATTAT
Found at i:849337 original size:21 final size:21
Alignment explanation
Indices: 849268--849338 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
849258 ATCATTTATT
* *
849268 TTAATCTTATCGTTAAAATAA
1 TTAATCTCATCATTAAAATAA
** **
849289 TTAATCTCATATCTATTATTATTT
1 TTAATCTC--ATC-ATTAAAATAA
849313 TTAATCTCATCATTAAAATAA
1 TTAATCTCATCATTAAAATAA
849334 TTAAT
1 TTAAT
849339 TTTATATCAA
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
21 18 0.49
22 3 0.08
23 3 0.08
24 13 0.35
ACGTcount: A:0.39, C:0.11, G:0.01, T:0.48
Consensus pattern (21 bp):
TTAATCTCATCATTAAAATAA
Found at i:849941 original size:17 final size:17
Alignment explanation
Indices: 849919--849952 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
849909 GGATTCGAAT
*
849919 TTTTTATTTTAAAATTA
1 TTTTTATATTAAAATTA
*
849936 TTTTTATATTATAATTA
1 TTTTTATATTAAAATTA
849953 AAATATATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTATATTAAAATTA
Found at i:851083 original size:11 final size:11
Alignment explanation
Indices: 851067--851109 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
851057 ATAAGTGATC
851067 TAATATAAAAA
1 TAATATAAAAA
851078 TAATATAAATAAA
1 TAATAT-AA-AAA
* *
851091 AAATATAAAGA
1 TAATATAAAAA
851102 TAATATAA
1 TAATATAA
851110 TTTAAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 15 0.56
12 4 0.15
13 8 0.30
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (11 bp):
TAATATAAAAA
Found at i:851917 original size:7 final size:7
Alignment explanation
Indices: 851905--851939 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
851895 ATTTTTTAAA
851905 AAATTTT
1 AAATTTT
851912 AAATTTT
1 AAATTTT
851919 AAATTTT
1 AAATTTT
*
851926 AATATTTA
1 AA-ATTTT
851934 AAATTT
1 AAATTT
851940 ATTTTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
AAATTTT
Found at i:851924 original size:14 final size:15
Alignment explanation
Indices: 851904--851939 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
851894 TATTTTTTAA
851904 AAAATTTTAA-ATTT
1 AAAATTTTAATATTT
*
851918 TAAATTTTAATATTT
1 AAAATTTTAATATTT
851933 AAAATTT
1 AAAATTT
851940 ATTTTTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AAAATTTTAATATTT
Found at i:859730 original size:21 final size:21
Alignment explanation
Indices: 859693--859736 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
859683 CCATCTATGC
*
859693 ATTTCAGCTGAAAAATTCAAA
1 ATTTCAGCTAAAAAATTCAAA
859714 ATTT-AGCTAAAATAATTCAAA
1 ATTTCAGCTAAAA-AATTCAAA
859735 AT
1 AT
859737 CTAATATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.32
Consensus pattern (21 bp):
ATTTCAGCTAAAAAATTCAAA
Found at i:863242 original size:9 final size:8
Alignment explanation
Indices: 863201--863241 Score: 59
Period size: 7 Copynumber: 5.2 Consensus size: 8
863191 TAATTTTATT
863201 AATAAAAA
1 AATAAAAA
863209 AAT-AAAA
1 AATAAAAA
863216 AAT-AAAA
1 AATAAAAA
863223 AATAAAAAA
1 AAT-AAAAA
863232 AATAAAAA
1 AATAAAAA
863240 AA
1 AA
863242 AGATAATTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 14 0.45
8 10 0.32
9 7 0.23
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AATAAAAA
Done.