Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 43 of 131
Found at i:9107175 original size:3 final size:3
Alignment explanation
Indices: 9107169--9107194 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9107159 ATTTATTATT
9107169 ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
9107195 TGTTTTGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:9107443 original size:105 final size:108
Alignment explanation
Indices: 9107323--9107530 Score: 280
Period size: 105 Copynumber: 2.0 Consensus size: 108
9107313 AATTCTACTG
* * * *
9107323 AACTATTGGAGGATTTTTAATGAATTTAAAATTTTTATGAAATTTATCAAATTATT-GAAGAATT
1 AACTATTGGAAGATTTTTAATGAATTTAAAAATTTTATGAAATTTACCAAACTATTGGAA-AATT
*
9107387 TTATAAATCAATTTTTTT-TAA-AAA-AATTTTGTTTTGCTATC
65 TCATAAATCAATTTTTTTCTAATAAAGAATTTTGTTTTGCTATC
* * *
9107428 AACTATTGGAAGATTTTTCATGAATTTAAAAATTTTATGAATTTTACCAAACTGTTGGAAAATTT
1 AACTATTGGAAGATTTTTAATGAATTTAAAAATTTTATGAAATTTACCAAACTATTGGAAAATTT
** *
9107493 CATAAATTGATTTTTTTCTAATAAAGTATTTTGTTTTG
66 CATAAATCAATTTTTTTCTAATAAAGAATTTTGTTTTG
9107531 ATGCTACCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
105 68 0.77
106 6 0.07
107 3 0.03
108 11 0.12
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.47
Consensus pattern (108 bp):
AACTATTGGAAGATTTTTAATGAATTTAAAAATTTTATGAAATTTACCAAACTATTGGAAAATTT
CATAAATCAATTTTTTTCTAATAAAGAATTTTGTTTTGCTATC
Found at i:9108346 original size:22 final size:21
Alignment explanation
Indices: 9108312--9108352 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
9108302 CTTACTTTAA
*
9108312 TTTTTTAACCTTATTTTTTTT
1 TTTTTTAACCTTAGTTTTTTT
*
9108333 TTTTTTTACACTTAGTTTTT
1 TTTTTTAAC-CTTAGTTTTT
9108353 GTATAAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.15, C:0.10, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTTTTAACCTTAGTTTTTTT
Found at i:9109142 original size:9 final size:9
Alignment explanation
Indices: 9109128--9109189 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 9
9109118 TTGTTTGCAT
9109128 TTTTTATTA
1 TTTTTATTA
9109137 TTTTTAGATTA
1 TTTTT--ATTA
9109148 TTTTTTATTTCA
1 -TTTTTA-TT-A
9109160 TTTATTATTA
1 TTT-TTATTA
*
9109170 TTGTTATTA
1 TTTTTATTA
*
9109179 TTATTATTA
1 TTTTTATTA
9109188 TT
1 TT
9109190 GTTGCTGTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
9 21 0.47
10 4 0.09
11 11 0.24
12 9 0.20
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.71
Consensus pattern (9 bp):
TTTTTATTA
Found at i:9109450 original size:49 final size:49
Alignment explanation
Indices: 9109340--9109561 Score: 169
Period size: 49 Copynumber: 4.3 Consensus size: 49
9109330 CATACAAAAT
* *
9109340 TATTGAAGGAATTTTT-ATGAATTTAAAATTTTTATGT-ATTCTACCATAC
1 TATTGAA-GAATTTTTCATGAATTTAAAAATTTTAT-TAATTCTACCAAAC
* *
9109389 TATTGGATAATTTTTCATGAATTTAAAAATTTTATTAATTCTACCAAAC
1 TATTGAAGAATTTTTCATGAATTTAAAAATTTTATTAATTCTACCAAAC
*** * *
9109438 TATTGAAGAATTTCATAAATCAATTTTTTTAAAAAACAATTTTATTTTGAATCCTACCAAAT
1 TATTGAAGAATTT--T---TC-ATGAATTT---AAA-AATTTTA--TT-AATTCTACCAAAC
* * * *
9109500 TATTGAAGGATTTTTTATGAATTTAAAATTTTTATGAATTCTACCAAAC
1 TATTGAAGAATTTTTCATGAATTTAAAAATTTTATTAATTCTACCAAAC
*
9109549 TATTGGAGAATTT
1 TATTGAAGAATTT
9109562 CATAAGTCAA
Statistics
Matches: 136, Mismatches: 22, Indels: 30
0.72 0.12 0.16
Matches are distributed among these distances:
48 8 0.06
49 68 0.50
50 1 0.01
51 1 0.01
52 6 0.04
53 3 0.02
54 2 0.01
55 5 0.04
56 5 0.04
57 1 0.01
58 3 0.02
59 7 0.05
60 1 0.01
61 2 0.01
62 23 0.17
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.45
Consensus pattern (49 bp):
TATTGAAGAATTTTTCATGAATTTAAAAATTTTATTAATTCTACCAAAC
Found at i:9109542 original size:111 final size:109
Alignment explanation
Indices: 9109380--9109621 Score: 331
Period size: 111 Copynumber: 2.2 Consensus size: 109
9109370 TTTATGTATT
* * ** *
9109380 CTACCATACTATTGGATAATTTTTCATGAATTTAAAAATTTTATTAATTCTACCAAACTATTGAA
1 CTACCAAACTATTGAAGGATTTTTCATGAATTTAAAAATTTTATGAATTCTACCAAACTATTGAA
9109445 GAATTTCATAAATCAATTTTTTTAAAAAACAATTTTATTTTGAATC
66 GAATTTCATAAATCAATTTTTTT-AAAAACAATTTTATTTTG-ATC
* * * *
9109491 CTACCAAATTATTGAAGGATTTTTTATGAATTTAAAATTTTTATGAATTCTACCAAACTATTGGA
1 CTACCAAACTATTGAAGGATTTTTCATGAATTTAAAAATTTTATGAATTCTACCAAACTATTGAA
* * ** *
9109556 GAATTTCATAAGTCAATTTTTTTAATAAGTATTTTGTTTTGATC
66 GAATTTCATAAATCAATTTTTTTAAAAACAATTTTATTTTGATC
*
9109600 CTACCAAACTATTGGAGGATTT
1 CTACCAAACTATTGAAGGATTT
9109622 GTATCTTAAA
Statistics
Matches: 115, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
109 23 0.20
110 14 0.12
111 78 0.68
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.43
Consensus pattern (109 bp):
CTACCAAACTATTGAAGGATTTTTCATGAATTTAAAAATTTTATGAATTCTACCAAACTATTGAA
GAATTTCATAAATCAATTTTTTTAAAAACAATTTTATTTTGATC
Found at i:9111248 original size:3 final size:3
Alignment explanation
Indices: 9111171--9111229 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
9111161 TTTATTTCTT
9111171 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9111219 TTA TTA TTA TT
1 TTA TTA TTA TT
9111230 GTTTTGTCTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:9111430 original size:49 final size:49
Alignment explanation
Indices: 9111352--9111538 Score: 153
Period size: 49 Copynumber: 3.6 Consensus size: 49
9111342 AAATAAATTC
9111352 ATGAATTCTACCAAACTATTGAA-AGATTTTTCATGAATTTAAAATTTTT
1 ATGAATTCTACCAAACTATTGAAGA-ATTTTTCATGAATTTAAAATTTTT
* * *
9111401 ATGAATTCTACTAAACTATTGAAGAATTTTATAAATTGATTTTAAAAGAAAATTTTGTT
1 ATGAATTCTACCAAACTATTGAAGAATTTT-T-CA-TGAATTT-----AAAA-TTT-TT
* * * * *
9111460 TTGAAAAT-TACCAAACTAGTGGAGAATTTTTCATAAATTTAAAATTTTT
1 ATG-AATTCTACCAAACTATTGAAGAATTTTTCATGAATTTAAAATTTTT
* * *
9111509 ATGAATTTTGCCAAACTATTGGAGAATTTT
1 ATGAATTCTACCAAACTATTGAAGAATTTT
9111539 ATAAATCAAT
Statistics
Matches: 110, Mismatches: 15, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
48 3 0.03
49 51 0.46
50 5 0.05
51 5 0.05
52 6 0.05
56 5 0.05
57 5 0.05
58 4 0.04
59 23 0.21
60 3 0.03
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.42
Consensus pattern (49 bp):
ATGAATTCTACCAAACTATTGAAGAATTTTTCATGAATTTAAAATTTTT
Found at i:9113055 original size:3 final size:3
Alignment explanation
Indices: 9113049--9113112 Score: 119
Period size: 3 Copynumber: 21.3 Consensus size: 3
9113039 TATGATGATG
*
9113049 ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9113097 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
9113113 AATGAAATAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:9114035 original size:134 final size:134
Alignment explanation
Indices: 9113812--9114079 Score: 394
Period size: 134 Copynumber: 2.0 Consensus size: 134
9113802 AGTCTCCCAT
* * ***
9113812 TTATTCATCAAATCCTTTAAAAAACTTTTTTCGCCTAATTCTTGCTTGAAATCCCAAAAAACTAT
1 TTATACATCAAATCCTTTAAAAAACTTTTTTAGCCTAATTCCCACTTGAAATCCCAAAAAACTAT
* *
9113877 CGATTTACTTTTTTTTCCTTTTTTAGTTTTCTTATTCAAAAATTAAGAGTAAAATAAAATAAAAA
66 CGATTTACTTTCTTTTCCTTTTTTAGTTTTCTTATACAAAAATTAAGAGTAAAATAAAATAAAAA
9113942 ATAA
131 ATAA
* * * * *
9113946 TTATACATCAAATCCTTTAGAAAACTTTTTTAGCTTGATTCCCACTTGAAATCCCAACAAACTGT
1 TTATACATCAAATCCTTTAAAAAACTTTTTTAGCCTAATTCCCACTTGAAATCCCAAAAAACTAT
* *
9114011 TGATTTACTTTCCTTTT-CTTTTTTAGTTTTCTTATACAAAAATTAAGAGTAAAATAAAATAACA
66 CGATTTACTTT-CTTTTCCTTTTTTAGTTTTCTTATACAAAAATTAAGAGTAAAATAAAATAAAA
9114075 AATAA
130 AATAA
9114080 GGTTAAAATA
Statistics
Matches: 119, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
134 115 0.97
135 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.41
Consensus pattern (134 bp):
TTATACATCAAATCCTTTAAAAAACTTTTTTAGCCTAATTCCCACTTGAAATCCCAAAAAACTAT
CGATTTACTTTCTTTTCCTTTTTTAGTTTTCTTATACAAAAATTAAGAGTAAAATAAAATAAAAA
ATAA
Found at i:9118844 original size:17 final size:18
Alignment explanation
Indices: 9118804--9118842 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
9118794 ACTAATAACA
9118804 TTTTGTGATATCATGACT
1 TTTTGTGATATCATGACT
9118822 TTTTGTGATATCATGACT
1 TTTTGTGATATCATGACT
9118840 TTT
1 TTT
9118843 GTTTCTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (18 bp):
TTTTGTGATATCATGACT
Found at i:9123358 original size:3 final size:3
Alignment explanation
Indices: 9123350--9123379 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
9123340 TAAATTGTAT
9123350 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
9123380 TAATAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:9124013 original size:71 final size:72
Alignment explanation
Indices: 9123925--9124061 Score: 197
Period size: 71 Copynumber: 1.9 Consensus size: 72
9123915 ATATTTTTTA
* * * * *
9123925 TTTTTGCCGCATCTTGGAAAGTTGTTGATGGAAGCTAG-TTTAAGAAAC-TTTTTTTTAATTTTT
1 TTTTTGCCACACCTTGGAAAGCTATTGATGGAAGCTAGTTTTAA-AAACTTTTTTTTTAATGTTT
9123988 TTTGTTTG
65 TTTGTTTG
*
9123996 TTTTTGCCACACCTTGGAAAGCTATTGATGGAAGCTGGTTTTAAAAACTTTTTTTTTAATGTTTT
1 TTTTTGCCACACCTTGGAAAGCTATTGATGGAAGCTAGTTTTAAAAACTTTTTTTTTAATGTTTT
9124061 T
66 T
9124062 ATTGCACCTT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
71 37 0.64
72 21 0.36
ACGTcount: A:0.23, C:0.10, G:0.18, T:0.49
Consensus pattern (72 bp):
TTTTTGCCACACCTTGGAAAGCTATTGATGGAAGCTAGTTTTAAAAACTTTTTTTTTAATGTTTT
TTGTTTG
Found at i:9125555 original size:3 final size:3
Alignment explanation
Indices: 9125549--9125719 Score: 144
Period size: 3 Copynumber: 59.3 Consensus size: 3
9125539 TTTTTACTAA
* * *
9125549 TAT TAT TAT TAT TAT TGT TAT TAT TAC TAG TAT TA- TAT TA- TAGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* *
9125593 CTAT TA- TAT TA- TAT TA- TAT TAT TGT TAT TAC TAT TAT TAT TAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * ** ** *
9125636 TAT TAT TAT TAT TAT TGT TAT TAT TAG TGC TCC TAT TAG TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
9125683 TAT TAT TAT TAT TA- TAT TA- TAC TA- TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
9125720 TTTTTTTTTC
Statistics
Matches: 138, Mismatches: 19, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
2 18 0.13
3 117 0.85
4 1 0.01
5 2 0.01
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:9126477 original size:16 final size:16
Alignment explanation
Indices: 9126456--9126507 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
9126446 CCGATCACAG
9126456 TTTTTTTCATTTTATT
1 TTTTTTTCATTTTATT
* *
9126472 TTTTTTTTACTTTATT
1 TTTTTTTCATTTTATT
**
9126488 TTTTAATCATTTTATGT
1 TTTTTTTCATTTTAT-T
9126505 TTT
1 TTT
9126508 AAGTTTTTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
16 25 0.86
17 4 0.14
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (16 bp):
TTTTTTTCATTTTATT
Found at i:9137692 original size:42 final size:42
Alignment explanation
Indices: 9137634--9137713 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
9137624 AAATTTTAGG
* * *
9137634 TTGAAGAAATGTCTTAAATGATGATCATTCAAGGCATTCGGC
1 TTGAAGAAACGCCTTAAATGATCATCATTCAAGGCATTCGGC
* *
9137676 TTGAAGAAACGCCTTAAATGATCATTATTTAAGGCATT
1 TTGAAGAAACGCCTTAAATGATCATCATTCAAGGCATT
9137714 TCTTCTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (42 bp):
TTGAAGAAACGCCTTAAATGATCATCATTCAAGGCATTCGGC
Found at i:9137784 original size:40 final size:40
Alignment explanation
Indices: 9137646--9138002 Score: 137
Period size: 42 Copynumber: 8.5 Consensus size: 40
9137636 GAAGAAATGT
* * ** * *
9137646 CTTAAATGATGATCATTCAAGGCATTCGGCTTGAAGAAACGC
1 CTTAAATGATGATCATTTAAGGCGTT-TTCTTTAA-AAAAGC
* * * *
9137688 CTTAAATGATCATTATTTAAGGC-ATTTCTTCTAAAAAAAATAC
1 CTTAAATGATGATCATTTAAGGCGTTTTCTT-T--AAAAAA-GC
* *
9137731 TTTAAATGTTGATCATTTAAGGCGTTTTCTTTAAAAAAGC
1 CTTAAATGATGATCATTTAAGGCGTTTTCTTTAAAAAAGC
* *
9137771 CTTCAATGATGATCATTTAAGGC-TTTTTTTTCCCAAAAAATGC
1 CTTAAATGATGATCATTTAAGGCGTTTTCTTT---AAAAAA-GC
* * * * **** ** * *
9137814 CTTCAATAAATCATCATTCAAATAAAATTTGGGTTGAAGAAATGC
1 CTTAAAT-GATGATCATT-TAA-GGCGTTT-TCTTTAA-AAAAGC
* * ** *
9137859 CTTAAATGATGATCATTCAAGGAGTTTGGGTTGAAAAAATGC
1 CTTAAATGATGATCATTTAAGGCGTTT-TCTTTAAAAAA-GC
* * *
9137901 CTTAAATGATCATTATTTAAGGTG-TTTCTTATCAAAATACA-C
1 CTTAAATGATGATCATTTAAGGCGTTTTCTT-T-AAAA-A-AGC
* * * *
9137943 CTTAAATGTTGATAATTTAAGGCATTTTCTTTAAAAATGC
1 CTTAAATGATGATCATTTAAGGCGTTTTCTTTAAAAAAGC
* *
9137983 CTTCAATGATGCTCATTTAA
1 CTTAAATGATGATCATTTAA
9138003 AGTGTTTGCC
Statistics
Matches: 239, Mismatches: 54, Indels: 46
0.71 0.16 0.14
Matches are distributed among these distances:
39 7 0.03
40 44 0.18
41 16 0.07
42 88 0.37
43 41 0.17
44 23 0.10
45 12 0.05
46 3 0.01
47 3 0.01
48 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (40 bp):
CTTAAATGATGATCATTTAAGGCGTTTTCTTTAAAAAAGC
Found at i:9137802 original size:43 final size:40
Alignment explanation
Indices: 9137735--9137820 Score: 93
Period size: 40 Copynumber: 2.1 Consensus size: 40
9137725 AAATACTTTA
* **
9137735 AATGTTGATCATTTAAGGCGTTTTCTTTAAAAAA-GCCTTC
1 AATGATGATCATTTAAGGCGTTTTC-CCAAAAAATGCCTTC
*
9137775 AATGATGATCATTTAAGGCTTTTTTTTCCCAAAAAATGCCTTC
1 AATGATGATCATTTAAGGC---GTTTTCCCAAAAAATGCCTTC
9137818 AAT
1 AAT
9137821 AAATCATCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
40 18 0.47
42 6 0.16
43 14 0.37
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (40 bp):
AATGATGATCATTTAAGGCGTTTTCCCAAAAAATGCCTTC
Found at i:9137867 original size:213 final size:209
Alignment explanation
Indices: 9137463--9138124 Score: 830
Period size: 213 Copynumber: 3.1 Consensus size: 209
9137453 TAAATTTTGA
* * **
9137463 GTTGAAGAAACACCTTAAATGATCATTATTTAAGGGGTTTCATCTCAAAAAAGGCCTTAAATGTT
1 GTTGAAGAAACACCTTAAATGATCATTATTTAAGGCGTTTCTTCTCAAAAAACACCTTAAATGTT
* * * * * *
9137528 GATCATTGAAGGCTTTTTTTTTTTTTTAAATA-CCTTCAATGATGATCATTTAAGACATTTTTTC
66 GATCATTTAAGGC----ATTTTCTTTAAAAAAGCCTTCAATGATGATCATTTAAGGC-TTTTTTC
* * *
9137592 TC-AAAAATGCCTTCAAT-AATCACCATTCAAATAAATTTTAGGTTGAAGAAATGTCTTAAATGA
126 CCAAAAAATGCCTTCAATAAATCATCATTCAAATAAATTTTAGGTTGAAGAAATGCCTTAAATGA
9137655 TGATCATTCAAGGCATTCG
191 TGATCATTCAAGGCATTCG
* * * * *
9137674 GCTTGAAGAAACGCCTTAAATGATCATTATTTAAGGCATTTCTTCTAAAAAAAATACTTTAAATG
1 G-TTGAAGAAACACCTTAAATGATCATTATTTAAGGCGTTTCTTCT-CAAAAAACACCTTAAATG
*
9137739 TTGATCATTTAAGGCGTTTTCTTTAAAAAAGCCTTCAATGATGATCATTTAAGGCTTTTTTTTCC
64 TTGATCATTTAAGGCATTTTCTTTAAAAAAGCCTTCAATGATGATCATTTAAGGC--TTTTTTCC
* *
9137804 CAAAAAATGCCTTCAATAAATCATCATTCAAATAAAATTTGGGTTGAAGAAATGCCTTAAATGAT
127 CAAAAAATGCCTTCAATAAATCATCATTCAAATAAATTTTAGGTTGAAGAAATGCCTTAAATGAT
*
9137869 GATCATTCAAGG-AGTTTGG
192 GATCATTCAAGGCA--TTCG
* ** * * *
9137888 GTTGAAAAAATGCCTTAAATGATCATTATTTAAGGTGTTTCTTATCAAAATACACCTTAAATGTT
1 GTTGAAGAAACACCTTAAATGATCATTATTTAAGGCGTTTCTTCTCAAAAAACACCTTAAATGTT
* * * * * *
9137953 GATAATTTAAGGCATTTTCTTTAAAAATGCCTTCAATGATGCTCATTTAAAG-TGTTTGCCTCAA
66 GATCATTTAAGGCATTTTCTTTAAAAAAGCCTTCAATGATGATCATTTAAGGCTTTTTTCC-CAA
*
9138017 AAAATACCTTCAATAAATCATCATTCAAATAAATTTTAGGTTGAAGAAATGCCTTAAATGATGAT
130 AAAATGCCTTCAATAAATCATCATTCAAATAAATTTTAGGTTGAAGAAATGCCTTAAATGATGAT
*
9138082 CATTTAAGGCATTCAG
195 CATTCAAGGCATTC-G
* *
9138098 GTTAAAGAAACACCTTAAATTATCATT
1 GTTGAAGAAACACCTTAAATGATCATT
9138125 TGGGTCTAAT
Statistics
Matches: 393, Mismatches: 47, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
209 19 0.05
210 119 0.30
211 10 0.03
212 119 0.30
213 122 0.31
214 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (209 bp):
GTTGAAGAAACACCTTAAATGATCATTATTTAAGGCGTTTCTTCTCAAAAAACACCTTAAATGTT
GATCATTTAAGGCATTTTCTTTAAAAAAGCCTTCAATGATGATCATTTAAGGCTTTTTTCCCAAA
AAATGCCTTCAATAAATCATCATTCAAATAAATTTTAGGTTGAAGAAATGCCTTAAATGATGATC
ATTCAAGGCATTCG
Found at i:9140985 original size:37 final size:37
Alignment explanation
Indices: 9140934--9141053 Score: 179
Period size: 37 Copynumber: 3.2 Consensus size: 37
9140924 TCCGAGACTA
9140934 AATCACCAAGAATCATGCTCTAACGGATCCATGATTG
1 AATCACCAAGAATCATGCTCTAACGGATCCATGATTG
* *
9140971 AATCACCAAAAATCATGCTCTATCGGATCCATGATTG
1 AATCACCAAGAATCATGCTCTAACGGATCCATGATTG
* * *
9141008 AATCACCAAGAATCATGCTCCAATGGATCTGA-GATTG
1 AATCACCAAGAATCATGCTCTAACGGATC-CATGATTG
9141045 AATCACCAA
1 AATCACCAA
9141054 TTTCTTTCTT
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
37 74 0.99
38 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (37 bp):
AATCACCAAGAATCATGCTCTAACGGATCCATGATTG
Found at i:9141082 original size:18 final size:18
Alignment explanation
Indices: 9141059--9141094 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
9141049 ACCAATTTCT
*
9141059 TTCTTCTTTTTTTTTTAA
1 TTCTTCTTTTTATTTTAA
9141077 TTCTTCTTTTTATTTTAA
1 TTCTTCTTTTTATTTTAA
9141095 ACCCTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (18 bp):
TTCTTCTTTTTATTTTAA
Found at i:9141119 original size:3 final size:3
Alignment explanation
Indices: 9141111--9141154 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
9141101 TTCAGTTTTT
*
9141111 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
9141155 GTATAATATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:9143409 original size:61 final size:60
Alignment explanation
Indices: 9143339--9143475 Score: 143
Period size: 62 Copynumber: 2.2 Consensus size: 60
9143329 GGCAAAAATA
*
9143339 CCTTGAATAATCCCATCAT-AAAATTGAAGAGG-ATTATTCAAAGTATTTTTGACCAAAAACG
1 CCTTAAATAATCCC-TCATAAAAATT-AA-AGGAATTATTCAAAGTATTTTTGACCAAAAACG
* * * * * *
9143400 CTTTAAATAATCTTCTCATAAAAATTAAAGGAAATTATTCAAGGTGTTTTTGGCTAAAAACG
1 CCTTAAATAATC-CCTCATAAAAATTAAAGG-AATTATTCAAAGTATTTTTGACCAAAAACG
*
9143462 CCTTGAATAATCCC
1 CCTTAAATAATCCC
9143476 CTTTAATTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
60 3 0.05
61 17 0.27
62 42 0.68
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.32
Consensus pattern (60 bp):
CCTTAAATAATCCCTCATAAAAATTAAAGGAATTATTCAAAGTATTTTTGACCAAAAACG
Found at i:9143552 original size:24 final size:25
Alignment explanation
Indices: 9143506--9143553 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
9143496 TAGTTAAGGC
*
9143506 ATTTTTTGGTAAAAAAACCTAAAATA
1 ATTTTTT-GTAAAAAAAACTAAAATA
*
9143532 ATTTTTT-TAAAAAAAATTAAAA
1 ATTTTTTGTAAAAAAAACTAAAA
9143554 ATGATTATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 13 0.65
26 7 0.35
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (25 bp):
ATTTTTTGTAAAAAAAACTAAAATA
Found at i:9144886 original size:100 final size:100
Alignment explanation
Indices: 9144782--9144972 Score: 240
Period size: 100 Copynumber: 1.9 Consensus size: 100
9144772 TATAGACAAA
* * * *
9144782 TGACTTTAAAAAAAAAATTTTCAAAAGTTCTCCTATAAATATAGGCAAGTGAATTTT-AAAAAAT
1 TGACTTTAAAAAAAAAATTTTAAAAAGTGCTCCTACAAACATAGGCAAGT-AATTTTAAAAAAAT
9144846 CTTAATTTGAAAAATGCTCTTATAAGGATAAGCAAG
65 CTTAATTTGAAAAATGCTCTTATAAGGATAAGCAAG
***** **
9144882 TGACTTTAAAAATCTCTTTTTAAAAAGTGCTTGTACAAACATAGGCAAGTAATTTTAAAAAAAAA
1 TGACTTTAAAAAAAAAATTTTAAAAAGTGCTCCTACAAACATAGGCAAGTAATTTT--AAAAAAA
*
9144947 TCTTAATTTGAAAAGTGCTCTTATAA
64 TCTTAATTTGAAAAATGCTCTTATAA
9144973 ACATAGGCTA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
99 6 0.08
100 39 0.51
102 31 0.41
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.34
Consensus pattern (100 bp):
TGACTTTAAAAAAAAAATTTTAAAAAGTGCTCCTACAAACATAGGCAAGTAATTTTAAAAAAATC
TTAATTTGAAAAATGCTCTTATAAGGATAAGCAAG
Found at i:9144962 original size:53 final size:51
Alignment explanation
Indices: 9144804--9145062 Score: 212
Period size: 51 Copynumber: 5.1 Consensus size: 51
9144794 AAAAATTTTC
* * *
9144804 AAAAGTTCTCCTATAAATATAGGCAAGTGAATTTT-AAAAAATCTTAATTTG
1 AAAAGTGCTCTTATAAACATAGGCAAGT-AATTTTAAAAAAATCTTAATTTG
* ** * * * ** *
9144855 AAAAATGCTCTTATAAGGATAAGCAAGTGACTTTAAAAATCTCTT--TTTA
1 AAAAGTGCTCTTATAAACATAGGCAAGTAATTTTAAAAAAATCTTAATTTG
*
9144904 AAAAGTGCT-TGTACAAACATAGGCAAGTAATTTTAAAAAAAAATCTTAATTTG
1 AAAAGTGCTCT-TATAAACATAGGCAAGTAATTTT--AAAAAAATCTTAATTTG
9144957 AAAAGTGCTCTTATAAACATAGGCTAA-TAACTTTTAAAAAAATCTCT-ATTTG
1 AAAAGTGCTCTTATAAACATAGGC-AAGTAA-TTTTAAAAAAATCT-TAATTTG
* * * * * **
9145009 AAAA-TGCTCCTATAGACATAAGCAAGTGACTTTAAAAATCTCTT--TTTG
1 AAAAGTGCTCTTATAAACATAGGCAAGTAATTTTAAAAAAATCTTAATTTG
9145057 AAAAGT
1 AAAAGT
9145063 TTTGAAAGTC
Statistics
Matches: 167, Mismatches: 29, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
48 9 0.05
49 30 0.18
50 17 0.10
51 57 0.34
52 19 0.11
53 28 0.17
54 7 0.04
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (51 bp):
AAAAGTGCTCTTATAAACATAGGCAAGTAATTTTAAAAAAATCTTAATTTG
Found at i:9145046 original size:102 final size:100
Alignment explanation
Indices: 9144804--9145062 Score: 258
Period size: 102 Copynumber: 2.6 Consensus size: 100
9144794 AAAAATTTTC
* * * *
9144804 AAAAGTTCTCCTATAAATATAGGCAAGTGAATTTTAAAAAATCTTAATTTGAAAAATGCTCTTAT
1 AAAAGTGCTCCTATAAACATAGGCAAGTGAATTTAAAAAAATCTTAATTTGAAAAGTGCTCTTAT
** * *
9144869 AAGGATAAGCAAGTGACTTTAAAAATCTCTTTTTA
66 AAACATAAGCAAGTAACTTTAAAAATCTCTATTTA
** *
9144904 AAAAGTGCTTGTACAAACATAGGCAAGT-AATTTTAAAAAAAAATCTTAATTTGAAAAGTGCTCT
1 AAAAGTGCTCCTATAAACATAGGCAAGTGAA-TTT--AAAAAAATCTTAATTTGAAAAGTGCTCT
* *
9144968 TATAAACATAGGCTAA-TAACTTTTAAAAAAATCTCTATTTG
63 TATAAACATAAGC-AAGTAAC-TTT--AAAAATCTCTATTTA
* * * **
9145009 AAAA-TGCTCCTATAGACATAAGCAAGTGACTTTAAAAATCTCTT--TTTGAAAAGT
1 AAAAGTGCTCCTATAAACATAGGCAAGTGAATTTAAAAAAATCTTAATTTGAAAAGT
9145063 TTTGAAAGTC
Statistics
Matches: 130, Mismatches: 21, Indels: 16
0.78 0.13 0.10
Matches are distributed among these distances:
99 2 0.02
100 36 0.28
102 48 0.37
103 5 0.04
104 21 0.16
105 18 0.14
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (100 bp):
AAAAGTGCTCCTATAAACATAGGCAAGTGAATTTAAAAAAATCTTAATTTGAAAAGTGCTCTTAT
AAACATAAGCAAGTAACTTTAAAAATCTCTATTTA
Found at i:9145531 original size:18 final size:20
Alignment explanation
Indices: 9145510--9145552 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
9145500 TTTATTATTG
*
9145510 TCATTCCA-TCATTTATC-T
1 TCATTCCACTCATTCATCTT
9145528 TCATT-CACTCATTCATCTT
1 TCATTCCACTCATTCATCTT
9145547 TCATTC
1 TCATTC
9145553 ATTTCTTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 2 0.10
18 13 0.62
19 6 0.29
ACGTcount: A:0.21, C:0.30, G:0.00, T:0.49
Consensus pattern (20 bp):
TCATTCCACTCATTCATCTT
Found at i:9145940 original size:32 final size:31
Alignment explanation
Indices: 9145904--9145981 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
9145894 TAAATCTTCG
* *
9145904 TAGGTGCTAACTAGACTAGACTTAATTCTCTA
1 TAGGTGCCAACTAGACT-GACTTAATTCTCCA
*
9145936 TAGGTGCCAACTAGACTGGCTTAATTCTCCA
1 TAGGTGCCAACTAGACTGACTTAATTCTCCA
* *
9145967 TAGGTGTCATCTAGA
1 TAGGTGCCAACTAGA
9145982 TCGGGCTTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 25 0.61
32 16 0.39
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (31 bp):
TAGGTGCCAACTAGACTGACTTAATTCTCCA
Found at i:9145962 original size:31 final size:31
Alignment explanation
Indices: 9145904--9146055 Score: 128
Period size: 32 Copynumber: 4.8 Consensus size: 31
9145894 TAAATCTTCG
* *
9145904 TAGGTGCTAACTAGACTAGACTTAATTCTCTA
1 TAGGTGCCAACTAGACT-GGCTTAATTCTCTA
*
9145936 TAGGTGCCAACTAGACTGGCTTAATTCTCCA
1 TAGGTGCCAACTAGACTGGCTTAATTCTCTA
* * * *
9145967 TAGGTGTCATCTAGATCGGGCTTAATTTTCTA
1 TAGGTGCCAACTAGA-CTGGCTTAATTCTCTA
* * * * *
9145999 TAAGTGCTAGCTAAATTAGGCTTAATT-TCT-
1 TAGGTGCCAACTAGACT-GGCTTAATTCTCTA
* *
9146029 TTGGTGCCAGCTAGACTGAGCTTAATT
1 TAGGTGCCAACTAGACTG-GCTTAATT
9146056 TTCTTCGATG
Statistics
Matches: 97, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
29 1 0.01
30 20 0.21
31 28 0.29
32 48 0.49
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (31 bp):
TAGGTGCCAACTAGACTGGCTTAATTCTCTA
Found at i:9146083 original size:31 final size:31
Alignment explanation
Indices: 9146009--9146091 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 31
9145999 TAAGTGCTAG
* * * *
9146009 CTAAATTAGGCTTAA-TTTCTTTGGTGCCAG
1 CTAAATTAGGCTTAATTTTCTTCGATGCAAA
* *
9146039 CTAGACT-GAGCTTAATTTTCTTCGATGCAAA
1 CTAAATTAG-GCTTAATTTTCTTCGATGCAAA
9146070 CTAAATTAGGCTTAATTCTTCT
1 CTAAATTAGGCTTAATT-TTCT
9146092 CGGTGTCAAG
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
29 1 0.02
30 11 0.27
31 24 0.59
32 5 0.12
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (31 bp):
CTAAATTAGGCTTAATTTTCTTCGATGCAAA
Found at i:9146114 original size:62 final size:62
Alignment explanation
Indices: 9145924--9146117 Score: 164
Period size: 62 Copynumber: 3.1 Consensus size: 62
9145914 CTAGACTAGA
* * * * * * ** *
9145924 CTTAATTCTCTATAGGTGCCAACTAGACT-GGCTTAATTCTCCATAGGTGTCATCTAGATCGGG
1 CTTAATTTTCTATAAGTGCAAACTAAATTAGGCTTAATTCTTC-T-GGTGTCAAGTAGATTGGG
* * * * *
9145987 CTTAATTTTCTATAAGTGCTAGCTAAATTAGGCTTAATTTCTT-TGGTG-CCAGCTAGACTGAG
1 CTTAATTTTCTATAAGTGCAAACTAAATTAGGCTTAA-TTCTTCTGGTGTCAAG-TAGATTGGG
*
9146049 CTTAATTTTCT-T-CGATGCAAACTAAATTAGGCTTAATTCTTCTCGGTGTCAAGTAGATTGGG
1 CTTAATTTTCTATAAG-TGCAAACTAAATTAGGCTTAATTCTTCT-GGTGTCAAGTAGATTGGG
9146111 CTTAATT
1 CTTAATT
9146118 CTTTTCATTG
Statistics
Matches: 105, Mismatches: 19, Indels: 15
0.76 0.14 0.11
Matches are distributed among these distances:
60 6 0.06
61 22 0.21
62 39 0.37
63 27 0.26
64 7 0.07
65 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (62 bp):
CTTAATTTTCTATAAGTGCAAACTAAATTAGGCTTAATTCTTCTGGTGTCAAGTAGATTGGG
Found at i:9146643 original size:19 final size:19
Alignment explanation
Indices: 9146621--9146660 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9146611 CATGATATAC
*
9146621 TTCTTTATCTCCTTTTGCT
1 TTCTTTATCTCCTTTTCCT
* *
9146640 TTCTTTTTTTCCTTTTCCT
1 TTCTTTATCTCCTTTTCCT
9146659 TT
1 TT
9146661 TTTTTTCTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.03, C:0.25, G:0.03, T:0.70
Consensus pattern (19 bp):
TTCTTTATCTCCTTTTCCT
Found at i:9146665 original size:19 final size:19
Alignment explanation
Indices: 9146630--9146666 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
9146620 CTTCTTTATC
*
9146630 TCCTTTTGCTTTCTTTTTT
1 TCCTTTTCCTTTCTTTTTT
9146649 TCCTTTTCCTTT-TTTTTT
1 TCCTTTTCCTTTCTTTTTT
9146667 CTCTATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.00, C:0.22, G:0.03, T:0.76
Consensus pattern (19 bp):
TCCTTTTCCTTTCTTTTTT
Found at i:9149821 original size:9 final size:9
Alignment explanation
Indices: 9149807--9149850 Score: 61
Period size: 9 Copynumber: 4.7 Consensus size: 9
9149797 TAATCATTCA
9149807 TCTTTTTTT
1 TCTTTTTTT
*
9149816 TCTTTTCTT
1 TCTTTTTTT
9149825 TCTTTTCTTT
1 TCTTTT-TTT
9149835 TCTTTTTTTT
1 TC-TTTTTTT
9149845 TCTTTT
1 TCTTTT
9149851 CTCTTATTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 18 0.58
10 9 0.29
11 4 0.13
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:9149823 original size:5 final size:5
Alignment explanation
Indices: 9149807--9149852 Score: 69
Period size: 5 Copynumber: 9.6 Consensus size: 5
9149797 TAATCATTCA
*
9149807 TCTTT T-TTT TCTTT TC-TT TCTTT TCTTT TCTTT TTTTT TCTTT TCT
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCT
9149853 CTTATTTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
4 8 0.22
5 29 0.78
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TCTTT
Found at i:9149841 original size:29 final size:29
Alignment explanation
Indices: 9149809--9149872 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
9149799 ATCATTCATC
* *
9149809 TTTTTTTTCTTTTCT-TTCTTTTCTTTTCT
1 TTTTTTTTCTTTTCTCTT-ATTTCTTTTAT
9149838 TTTTTTTTCTTTTCTCTTATTTCTTTTAT
1 TTTTTTTTCTTTTCTCTTATTTCTTTTAT
9149867 TTTTTT
1 TTTTTT
9149873 CCCATTTCCC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 30 0.94
30 2 0.06
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (29 bp):
TTTTTTTTCTTTTCTCTTATTTCTTTTAT
Found at i:9149864 original size:20 final size:20
Alignment explanation
Indices: 9149823--9149864 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
9149813 TTTTCTTTTC
* * *
9149823 TTTCTTTTCTTTTCTTTTTT
1 TTTCTTTTCTCTTATTTCTT
9149843 TTTCTTTTCTCTTATTTCTT
1 TTTCTTTTCTCTTATTTCTT
9149863 TT
1 TT
9149865 ATTTTTTTCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (20 bp):
TTTCTTTTCTCTTATTTCTT
Found at i:9154979 original size:21 final size:21
Alignment explanation
Indices: 9154945--9154993 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
9154935 AATCAAAATA
9154945 TTTTTTC--ATTTTTTT-A-T
1 TTTTTTCAAATTTTTTTAACT
9154962 TCTTTTTCAAATTTTTTTAACT
1 T-TTTTTCAAATTTTTTTAACT
9154984 TTTTTTCAAA
1 TTTTTTCAAA
9154994 ATTTCCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 1 0.04
18 6 0.22
20 8 0.30
21 10 0.37
22 2 0.07
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTTTTCAAATTTTTTTAACT
Found at i:9156528 original size:8 final size:7
Alignment explanation
Indices: 9156513--9156647 Score: 92
Period size: 7 Copynumber: 19.6 Consensus size: 7
9156503 TTGAAAGTTA
9156513 GTTTAAG
1 GTTTAAG
9156520 GTTTAAAG
1 GTTT-AAG
9156528 GATTTAAG
1 G-TTTAAG
9156536 GTTTAA-
1 GTTTAAG
*
9156542 G-TTAGG
1 GTTTAAG
*
9156548 GTTTAGG
1 GTTTAAG
*
9156555 GTTTAAC
1 GTTTAAG
*
9156562 GTTTATG
1 GTTTAAG
9156569 G-TTAAG
1 GTTTAAG
9156575 GTTT-AG
1 GTTTAAG
9156581 GTTTAAG
1 GTTTAAG
9156588 GTTT-AG
1 GTTTAAG
9156594 AGTTTAA-
1 -GTTTAAG
9156601 GTTT-AG
1 GTTTAAG
9156607 GCTTT-AG
1 G-TTTAAG
9156614 GTTTAA-
1 GTTTAAG
9156620 GTTT-AG
1 GTTTAAG
9156626 GCTTTATTAAG
1 G---T-TTAAG
9156637 GTTTAAG
1 GTTTAAG
9156644 GTTT
1 GTTT
9156648 CAAGTTTGGG
Statistics
Matches: 105, Mismatches: 6, Indels: 34
0.72 0.04 0.23
Matches are distributed among these distances:
5 5 0.05
6 28 0.27
7 53 0.50
8 10 0.10
9 4 0.04
10 2 0.02
11 3 0.03
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.45
Consensus pattern (7 bp):
GTTTAAG
Found at i:9156591 original size:33 final size:31
Alignment explanation
Indices: 9156513--9156647 Score: 91
Period size: 33 Copynumber: 4.1 Consensus size: 31
9156503 TTGAAAGTTA
9156513 GTTTAAGGTTTAAAGGATTTAAGGTTTAA-G-TTAGG
1 GTTTAAGGTTT-AA-G-TTT-AGG-TTAAGGTTTA-G
*
9156548 GTTTAGGGTTTAACGTTTATGGTTAAGGTTTAG
1 GTTTAAGGTTTAA-GTTTA-GGTTAAGGTTTAG
* *
9156581 GTTTAAGGTTTAGAGTTTAAGTTTAGGCTTTAG
1 GTTTAAGGTTTA-AGTTTAGGTTAAGG-TTTAG
*
9156614 GTTTAA-GTTTAGGCTTTA--TTAAGGTTTAAG
1 GTTTAAGGTTTAAG-TTTAGGTTAAGGTTT-AG
9156644 GTTT
1 GTTT
9156648 CAAGTTTGGG
Statistics
Matches: 86, Mismatches: 7, Indels: 19
0.77 0.06 0.17
Matches are distributed among these distances:
29 3 0.03
30 11 0.13
31 1 0.01
32 20 0.23
33 34 0.40
34 7 0.08
35 10 0.12
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.45
Consensus pattern (31 bp):
GTTTAAGGTTTAAGTTTAGGTTAAGGTTTAG
Found at i:9156623 original size:19 final size:18
Alignment explanation
Indices: 9156534--9156631 Score: 99
Period size: 19 Copynumber: 5.1 Consensus size: 18
9156524 AAAGGATTTA
9156534 AGGTTTAAG-TTAGGGTTT
1 AGGTTTAAGTTTA-GGTTT
*
9156552 AGGGTTTAACGTTTATGGTTA
1 A-GGTTTAA-GTTTA-GGTTT
*
9156573 AGGTTTAGGTTTAAGGTTT
1 AGGTTTAAGTTT-AGGTTT
9156592 AGAGTTTAAGTTTAGGCTTT
1 AG-GTTTAAGTTTAGG-TTT
9156612 AGGTTTAAGTTTAGGCTTT
1 AGGTTTAAGTTTAGG-TTT
9156631 A
1 A
9156632 TTAAGGTTTA
Statistics
Matches: 69, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
18 1 0.01
19 38 0.55
20 22 0.32
21 8 0.12
ACGTcount: A:0.23, C:0.03, G:0.29, T:0.45
Consensus pattern (18 bp):
AGGTTTAAGTTTAGGTTT
Found at i:9156631 original size:13 final size:13
Alignment explanation
Indices: 9156513--9156624 Score: 97
Period size: 13 Copynumber: 8.4 Consensus size: 13
9156503 TTGAAAGTTA
9156513 GTTTAAGGTTTAAAG
1 GTTTAAGGTTT--AG
*
9156528 GATTTAAGGTTTAA
1 G-TTTAAGGTTTAG
*
9156542 G-TTAGGGTTTAGG
1 GTTTAAGGTTTA-G
*
9156555 GTTTAACGTTTATG
1 GTTTAAGGTTTA-G
9156569 G-TTAAGGTTTAG
1 GTTTAAGGTTTAG
9156581 GTTTAAGGTTTAG
1 GTTTAAGGTTTAG
9156594 AGTTTAA-GTTTAG
1 -GTTTAAGGTTTAG
*
9156607 GCTTT-AGGTTTAA
1 G-TTTAAGGTTTAG
9156620 GTTTA
1 GTTTA
9156625 GGCTTTATTA
Statistics
Matches: 81, Mismatches: 8, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
12 16 0.20
13 36 0.44
14 18 0.22
15 1 0.01
16 10 0.12
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.45
Consensus pattern (13 bp):
GTTTAAGGTTTAG
Found at i:9156668 original size:21 final size:21
Alignment explanation
Indices: 9156636--9156682 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
9156626 GCTTTATTAA
* *
9156636 GGTTTAAGGTTTCAAGTTTGG
1 GGTTTAAGGTTTCAAATTTAG
*
9156657 GGTTT-AGCGTTTGAAATTTAG
1 GGTTTAAG-GTTTCAAATTTAG
9156678 GGTTT
1 GGTTT
9156683 CAAGTTCATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.19, C:0.04, G:0.32, T:0.45
Consensus pattern (21 bp):
GGTTTAAGGTTTCAAATTTAG
Found at i:9164320 original size:21 final size:20
Alignment explanation
Indices: 9164289--9164332 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
9164279 AGCATATAAA
*
9164289 TTATATAAATTCAGATTAAT
1 TTATATAAATTAAGATTAAT
*
9164309 TTATATTAAATTAAGATTACT
1 TTATA-TAAATTAAGATTAAT
9164330 TTA
1 TTA
9164333 AATGCTAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (20 bp):
TTATATAAATTAAGATTAAT
Found at i:9171854 original size:32 final size:32
Alignment explanation
Indices: 9171818--9171880 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
9171808 CAAGGTGTAT
* *
9171818 AGGAAAGCCTACACATAACTCCAAGAATATAA
1 AGGAAAGCCAAAACATAACTCCAAGAATATAA
9171850 AGGAAAGCCAAAACATAACTCCAAGAATATA
1 AGGAAAGCCAAAACATAACTCCAAGAATATA
9171881 TCTCGTATCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.52, C:0.21, G:0.13, T:0.14
Consensus pattern (32 bp):
AGGAAAGCCAAAACATAACTCCAAGAATATAA
Found at i:9179755 original size:2 final size:2
Alignment explanation
Indices: 9179748--9179773 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9179738 TTTGCAATAA
9179748 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
9179774 TAAAAAGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9184582 original size:17 final size:17
Alignment explanation
Indices: 9184560--9184612 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
9184550 AATATAAAAC
*
9184560 TTACTAGAAATGGAAAG
1 TTACTAAAAATGGAAAG
** *
9184577 TTACTAAAAATAAAAAA
1 TTACTAAAAATGGAAAG
9184594 TTACTATAAAA-GGAAAG
1 TTACTA-AAAATGGAAAG
9184611 TT
1 TT
9184613 TTAATCCTAT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
17 24 0.86
18 4 0.14
ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26
Consensus pattern (17 bp):
TTACTAAAAATGGAAAG
Found at i:9186564 original size:32 final size:32
Alignment explanation
Indices: 9186503--9186565 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
9186493 TATCATAATA
**
9186503 GGACAAAACATATTTACTTCATTTTTTATAAC
1 GGACAAAACATATTTACTTCATTACTTATAAC
*
9186535 GGACAAAAC-TGATTTACTTTATTACTTATAA
1 GGACAAAACAT-ATTTACTTCATTACTTATAA
9186566 TATAATAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 1 0.04
32 26 0.96
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (32 bp):
GGACAAAACATATTTACTTCATTACTTATAAC
Found at i:9187293 original size:28 final size:27
Alignment explanation
Indices: 9187261--9187324 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
9187251 TTGTATTTTT
9187261 AATTTTTAACATTTAGAAATTTTCTAGA
1 AATTTTTAACATTTAG-AATTTTCTAGA
* * * *
9187289 AATTTTCAATATTTTGAATTTTTTAGA
1 AATTTTTAACATTTAGAATTTTCTAGA
*
9187316 ATTTTTTAA
1 AATTTTTAA
9187325 TTTTTTTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 17 0.57
28 13 0.43
ACGTcount: A:0.36, C:0.05, G:0.06, T:0.53
Consensus pattern (27 bp):
AATTTTTAACATTTAGAATTTTCTAGA
Found at i:9187308 original size:27 final size:27
Alignment explanation
Indices: 9187278--9187330 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
9187268 AACATTTAGA
9187278 AATTTTCTAGAAATTTTCAATATTTTG
1 AATTTTCTAGAAATTTTCAATATTTTG
* * * *
9187305 AATTTTTTAGAATTTTTTAATTTTTT
1 AATTTTCTAGAAATTTTCAATATTTT
9187331 TAAAATATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (27 bp):
AATTTTCTAGAAATTTTCAATATTTTG
Found at i:9187370 original size:17 final size:17
Alignment explanation
Indices: 9187343--9187411 Score: 52
Period size: 17 Copynumber: 4.1 Consensus size: 17
9187333 AAATATCAAA
9187343 TTTACTTTTTTCAATATT
1 TTTA-TTTTTTCAATATT
* **
9187361 TTTATTTTTTAAATAAA
1 TTTATTTTTTCAATATT
* * *
9187378 ATCATTTTTTGAAT-TT
1 TTTATTTTTTCAATATT
*
9187394 TTTATATTTTCAA-ATT
1 TTTATTTTTTCAATATT
9187410 TT
1 TT
9187412 AACATTTTAC
Statistics
Matches: 38, Mismatches: 12, Indels: 4
0.70 0.22 0.07
Matches are distributed among these distances:
16 13 0.34
17 21 0.55
18 4 0.11
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (17 bp):
TTTATTTTTTCAATATT
Found at i:9187481 original size:20 final size:21
Alignment explanation
Indices: 9187458--9187501 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
9187448 CTTTTTAGAA
* *
9187458 TTTTTATAAATTTT-TTTATT
1 TTTTTAGAAATTTTCTATATT
9187478 TTTTTAGAAATTTTCTATATT
1 TTTTTAGAAATTTTCTATATT
9187499 TTT
1 TTT
9187502 AATATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTTAGAAATTTTCTATATT
Found at i:9187481 original size:29 final size:29
Alignment explanation
Indices: 9187439--9187501 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
9187429 AAATATTTAG
*
9187439 TTTTTTTAACTTTTTAGAATTTTTATAAA
1 TTTTTTTAACTTTTTAGAAATTTTATAAA
** * *
9187468 TTTTTTTATTTTTTTAGAAATTTTCTATA
1 TTTTTTTAACTTTTTAGAAATTTTATAAA
9187497 TTTTT
1 TTTTT
9187502 AATATTTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.68
Consensus pattern (29 bp):
TTTTTTTAACTTTTTAGAAATTTTATAAA
Found at i:9187502 original size:19 final size:20
Alignment explanation
Indices: 9187457--9187502 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
9187447 ACTTTTTAGA
* *
9187457 ATTTTTATAAATTTTTTTAT
1 ATTTTTAGAAATTTTTCTAT
*
9187477 TTTTTTAGAAA-TTTTCTAT
1 ATTTTTAGAAATTTTTCTAT
9187496 ATTTTTA
1 ATTTTTA
9187503 ATATTTAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (20 bp):
ATTTTTAGAAATTTTTCTAT
Found at i:9187705 original size:28 final size:28
Alignment explanation
Indices: 9187682--9187753 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
9187672 AGTAAAATTT
* *
9187682 TAAAAT-TTATAAACATTTTTTAAAACA
1 TAAAATATTATAAAAATTTTCTAAAACA
9187709 TAAAATATTATAAAAATTTTCTAAAAGACA
1 TAAAATATTATAAAAATTTTCT-AAA-ACA
9187739 TAAAA-ATTA-AAAAAT
1 TAAAATATTATAAAAAT
9187754 ATGAAAAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 6 0.15
28 19 0.47
29 7 0.17
30 8 0.20
ACGTcount: A:0.58, C:0.06, G:0.01, T:0.35
Consensus pattern (28 bp):
TAAAATATTATAAAAATTTTCTAAAACA
Found at i:9193514 original size:17 final size:16
Alignment explanation
Indices: 9193485--9193532 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 16
9193475 CTCAACTTAC
9193485 AAAAA-AAAAA-AAAA
1 AAAAAGAAAAAGAAAA
*
9193499 GAAAAGAAAAAGAAAA
1 AAAAAGAAAAAGAAAA
*
9193515 AAAATAGAGAAAGAAAA
1 AAAA-AGAAAAAGAAAA
9193532 A
1 A
9193533 TGGCAATAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.14
15 5 0.18
16 7 0.25
17 12 0.43
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.02
Consensus pattern (16 bp):
AAAAAGAAAAAGAAAA
Found at i:9193514 original size:23 final size:23
Alignment explanation
Indices: 9193485--9193532 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
9193475 CTCAACTTAC
9193485 AAAA-AAAAAAAAAAGA-AAAGA
1 AAAAGAAAAAAAAAAGAGAAAGA
*
9193506 AAAAGAAAAAAAATAGAGAAAGA
1 AAAAGAAAAAAAAAAGAGAAAGA
9193529 AAAA
1 AAAA
9193533 TGGCAATAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 4 0.17
22 11 0.46
23 9 0.38
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.02
Consensus pattern (23 bp):
AAAAGAAAAAAAAAAGAGAAAGA
Found at i:9196682 original size:35 final size:36
Alignment explanation
Indices: 9196595--9196690 Score: 104
Period size: 38 Copynumber: 2.6 Consensus size: 36
9196585 CAAGCATCTT
* * * **
9196595 AATAGGTAGTACATGTATCCCATCTGATGCACATCA
1 AATAGATAGTACATGCATTCCATCCCATGCACATCA
* *
9196631 TAATAAGATAATACATGCATTCCATCCCATTCACATC-
1 -AAT-AGATAGTACATGCATTCCATCCCATGCACATCA
9196668 AATAGATAGTACATGCATTCCAT
1 AATAGATAGTACATGCATTCCAT
9196691 TTCATACATA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
35 19 0.38
36 3 0.06
37 3 0.06
38 25 0.50
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.29
Consensus pattern (36 bp):
AATAGATAGTACATGCATTCCATCCCATGCACATCA
Found at i:9201995 original size:130 final size:130
Alignment explanation
Indices: 9201761--9202005 Score: 368
Period size: 130 Copynumber: 1.9 Consensus size: 130
9201751 GAAAGCATCT
* *** * *
9201761 GACATGCACCTAGAAGATGAGAATCTGGGGTAAAAAGTGAATAAAATTATAGTTAGAATCCTAAG
1 GACATACACCTAGAAGATGAGAATCCAAGGAAAAAAGTGAATAAAATTATAGTTAGAATCCCAAG
9201826 AACTCAAGAAAGTAGATTACTAAAGTTGAAATCAAATGTTTAAAAAAAAGGGCAAAAGAAAATAA
66 AACTCAAGAAAGTAGATTACTAAAGTTGAAATCAAATGTTTAAAAAAAAGGGCAAAAGAAAATAA
*
9201891 GACATACACCTTAG-AGATGAGAATCCAAGGAAAAAAGTGAATAAAGTTATAGTTAGAATCCCAA
1 GACATACACC-TAGAAGATGAGAATCCAAGGAAAAAAGTGAATAAAATTATAGTTAGAATCCCAA
* * *
9201955 GAATTCAAGAAAGTAGATTCCTAAAGTTGAAGT-AATATGTTTAAAAAAAAG
65 GAACTCAAGAAAGTAGATTACTAAAGTTGAAATCAA-ATGTTTAAAAAAAAG
9202006 AAAAAAACAA
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
129 2 0.02
130 98 0.95
131 3 0.03
ACGTcount: A:0.49, C:0.10, G:0.19, T:0.22
Consensus pattern (130 bp):
GACATACACCTAGAAGATGAGAATCCAAGGAAAAAAGTGAATAAAATTATAGTTAGAATCCCAAG
AACTCAAGAAAGTAGATTACTAAAGTTGAAATCAAATGTTTAAAAAAAAGGGCAAAAGAAAATAA
Found at i:9203727 original size:17 final size:17
Alignment explanation
Indices: 9203700--9203733 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
9203690 AGAGGTTGTT
9203700 GAAAAAAATGA-ATAAA
1 GAAAAAAATGAGATAAA
9203716 GAAAAAAGATGAGATAAA
1 GAAAAAA-ATGAGATAAA
9203734 ATTTTAAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.12
Consensus pattern (17 bp):
GAAAAAAATGAGATAAA
Found at i:9203881 original size:33 final size:33
Alignment explanation
Indices: 9203821--9203896 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
9203811 AATTTAGTTG
* *
9203821 GCACCCAGATGATATTTAAGCCCAGTTTAACTA
1 GCACCTAGATAATATTTAAGCCCAGTTTAACTA
** **
9203854 GCACCTAGATAATATTTAAGCTTAGTTTAGTTA
1 GCACCTAGATAATATTTAAGCCCAGTTTAACTA
9203887 GCACCTAGAT
1 GCACCTAGAT
9203897 CAAACTAGGC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.32
Consensus pattern (33 bp):
GCACCTAGATAATATTTAAGCCCAGTTTAACTA
Found at i:9204639 original size:33 final size:33
Alignment explanation
Indices: 9204602--9204690 Score: 101
Period size: 33 Copynumber: 2.7 Consensus size: 33
9204592 AATTTAGAAA
*
9204602 AAAAAACAAAATTCAAGAAAAACCAAAAAAATC
1 AAAAAACAAAATTCAAAAAAAACCAAAAAAATC
* *
9204635 AAAAATCAAAAATT-AAAAAAAATCAAAAAAATC
1 AAAAAAC-AAAATTCAAAAAAAACCAAAAAAATC
*
9204668 AAAACAA-AAAAATCAATAAAAAA
1 AAAA-AACAAAATTCAA-AAAAAA
9204691 ACTTTAAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
32 5 0.11
33 29 0.62
34 13 0.28
ACGTcount: A:0.76, C:0.11, G:0.01, T:0.11
Consensus pattern (33 bp):
AAAAAACAAAATTCAAAAAAAACCAAAAAAATC
Found at i:9204654 original size:9 final size:9
Alignment explanation
Indices: 9204609--9204671 Score: 60
Period size: 9 Copynumber: 7.2 Consensus size: 9
9204599 AAAAAAAAAC
*
9204609 AAAATTCAA
1 AAAAATCAA
*
9204618 GAAAAACCAA
1 -AAAAATCAA
9204628 AAAAATC--
1 AAAAATCAA
9204635 AAAAATC-A
1 AAAAATCAA
* *
9204643 AAAATTAAA
1 AAAAATCAA
9204652 AAAAATCAA
1 AAAAATCAA
9204661 AAAAATCAA
1 AAAAATCAA
9204670 AA
1 AA
9204672 CAAAAAAATC
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
7 7 0.16
8 5 0.11
9 25 0.57
10 7 0.16
ACGTcount: A:0.75, C:0.11, G:0.02, T:0.13
Consensus pattern (9 bp):
AAAAATCAA
Found at i:9204665 original size:13 final size:15
Alignment explanation
Indices: 9204658--9204691 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
9204648 TAAAAAAAAT
9204658 CAAAAAAATCAA-AA
1 CAAAAAAATCAATAA
9204672 CAAAAAAATCAATAA
1 CAAAAAAATCAATAA
9204687 -AAAAA
1 CAAAAA
9204692 CTTTAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.89
15 2 0.11
ACGTcount: A:0.79, C:0.12, G:0.00, T:0.09
Consensus pattern (15 bp):
CAAAAAAATCAATAA
Found at i:9204691 original size:14 final size:14
Alignment explanation
Indices: 9204620--9204683 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 14
9204610 AAATTCAAGA
9204620 AAAACCAAAAAAATC
1 AAAA-CAAAAAAATC
**
9204635 AAAAATCAAAAATTAAAA
1 -AAAA-CAAAAA--AATC
9204653 AAAATCAAAAAAATC
1 AAAA-CAAAAAAATC
9204668 AAAACAAAAAAATC
1 AAAACAAAAAAATC
9204682 AA
1 AA
9204684 TAAAAAAACT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
14 12 0.29
15 6 0.15
16 10 0.24
17 11 0.27
18 2 0.05
ACGTcount: A:0.77, C:0.12, G:0.00, T:0.11
Consensus pattern (14 bp):
AAAACAAAAAAATC
Found at i:9204691 original size:26 final size:25
Alignment explanation
Indices: 9204626--9204689 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 25
9204616 AAGAAAAACC
9204626 AAAAAAATC--AAAAATCAAAAATTA
1 AAAAAAATCAAAAAAATCAAAAA-TA
*
9204650 AAAAAAATCAAAAAAATC-AAAA-C
1 AAAAAAATCAAAAAAATCAAAAATA
9204673 AAAAAAATCAATAAAAA
1 AAAAAAATCAA-AAAAA
9204690 AACTTTAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
23 11 0.31
24 14 0.39
25 4 0.11
26 7 0.19
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (25 bp):
AAAAAAATCAAAAAAATCAAAAATA
Found at i:9205081 original size:20 final size:19
Alignment explanation
Indices: 9205038--9205085 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 19
9205028 TCAAAGCCTA
9205038 ATTTTATTTT-TATTGTTTT
1 ATTTT-TTTTATATTGTTTT
9205057 A--TTTTTTATATTGTTCTT
1 ATTTTTTTTATATTGTT-TT
9205075 ATTTTTTTTAT
1 ATTTTTTTTAT
9205086 TTATTGAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
16 4 0.16
17 9 0.36
18 3 0.12
19 1 0.04
20 8 0.32
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (19 bp):
ATTTTTTTTATATTGTTTT
Found at i:9205086 original size:18 final size:17
Alignment explanation
Indices: 9205044--9205086 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 17
9205034 CCTAATTTTA
9205044 TTTTTATTGTTTTATTT
1 TTTTTATTGTTTTATTT
*
9205061 TTTATATTGTTCTTATTT
1 TTTTTATTGTT-TTATTT
9205079 TTTTTATT
1 TTTTTATT
9205087 TATTGAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTTTATTGTTTTATTT
Found at i:9206823 original size:13 final size:13
Alignment explanation
Indices: 9206805--9206834 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9206795 TAATTCTCTT
9206805 ACATCTTTTTCTC
1 ACATCTTTTTCTC
*
9206818 ACATCTTTTTTTC
1 ACATCTTTTTCTC
9206831 ACAT
1 ACAT
9206835 ATTTATAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.27, G:0.00, T:0.53
Consensus pattern (13 bp):
ACATCTTTTTCTC
Found at i:9206931 original size:52 final size:52
Alignment explanation
Indices: 9206848--9206951 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 52
9206838 TATAATCATG
* * * *
9206848 TAAACTTGCCTATTAAGAATCATTTTCCTCTTAGAATTTTTCTTTTGCAAGT
1 TAAACTTGCCTATTAAAAATCATTTTCCTCTTAAAATTCTTATTTTGCAAGT
* *
9206900 TAAACTTGCCTATTAAAAAATTATTTT-CTCTTAAAATTCTTATTTTGTAAGT
1 TAAACTTGCCTATT-AAAAATCATTTTCCTCTTAAAATTCTTATTTTGCAAGT
9206952 CTTTTTATCC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
52 35 0.78
53 10 0.22
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (52 bp):
TAAACTTGCCTATTAAAAATCATTTTCCTCTTAAAATTCTTATTTTGCAAGT
Found at i:9208959 original size:3 final size:3
Alignment explanation
Indices: 9208951--9208989 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
9208941 TTTTAAGATG
*
9208951 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9208990 AATTTTGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:9211585 original size:14 final size:13
Alignment explanation
Indices: 9211566--9211605 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
9211556 CTACATTTAT
9211566 TAAAAACAGTAATA
1 TAAAAACA-TAATA
*
9211580 TAAAAACAATAAAA
1 TAAAAAC-ATAATA
9211594 TAAAAACATAAT
1 TAAAAACATAAT
9211606 CAACCTTACG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 4 0.17
14 18 0.78
15 1 0.04
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (13 bp):
TAAAAACATAATA
Found at i:9220621 original size:19 final size:21
Alignment explanation
Indices: 9220582--9220626 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
9220572 AAATTAGATG
9220582 ATATTATTTTATTAATGAATAA
1 ATATTATTTTATTAA-GAATAA
9220604 ATATTATTTT-TTAA-AATAA
1 ATATTATTTTATTAAGAATAA
9220623 ATAT
1 ATAT
9220627 ATAAATATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
21 4 0.17
22 10 0.43
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
ATATTATTTTATTAAGAATAA
Found at i:9220685 original size:31 final size:26
Alignment explanation
Indices: 9220650--9220720 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 26
9220640 TTTTTAAAAA
*
9220650 ATTTAATTTATTAATAAGATGATATTATTC
1 ATTTAATTTATTAATAA-AT--TAATA-TC
*
9220680 TATTTATTTTATTAATAAATTAATATC
1 -ATTTAATTTATTAATAAATTAATATC
9220707 ATTTAATTTATTAA
1 ATTTAATTTATTAA
9220721 CAATATATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
26 13 0.35
27 2 0.05
28 4 0.11
30 2 0.05
31 16 0.43
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (26 bp):
ATTTAATTTATTAATAAATTAATATC
Found at i:9221898 original size:22 final size:23
Alignment explanation
Indices: 9221864--9221908 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
9221854 ATTAATTTTT
**
9221864 AATTAATTTAATT-TAAAAATTG
1 AATTAATAGAATTATAAAAATTG
9221886 AATTAATAGAATTAATAAAAATT
1 AATTAATAGAATT-ATAAAAATT
9221909 TTAATTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
24 8 0.42
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (23 bp):
AATTAATAGAATTATAAAAATTG
Found at i:9221926 original size:21 final size:23
Alignment explanation
Indices: 9221902--9221953 Score: 72
Period size: 21 Copynumber: 2.3 Consensus size: 23
9221892 TAGAATTAAT
*
9221902 AAAAATTTTAA-T-TTAAATATA
1 AAAAATTTTAAGTATAAAATATA
9221923 AAAAATTTTAAGTATAAAATATA
1 AAAAATTTTAAGTATAAAATATA
9221946 AATAAATT
1 AA-AAATT
9221954 ATTTTATTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 11 0.41
22 1 0.04
23 10 0.37
24 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
AAAAATTTTAAGTATAAAATATA
Found at i:9223883 original size:18 final size:18
Alignment explanation
Indices: 9223862--9223896 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
9223852 TTTTCAGAAG
9223862 TTTTTT-TTTTTTCAATTA
1 TTTTTTGTTTTTT-AATTA
9223880 TTTTTTGTTTTTTAATT
1 TTTTTTGTTTTTTAATT
9223897 TTTAAAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (18 bp):
TTTTTTGTTTTTTAATTA
Found at i:9227552 original size:16 final size:15
Alignment explanation
Indices: 9227525--9227562 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
9227515 TAATAATAAA
9227525 TTAAAAATAATTTTT
1 TTAAAAATAATTTTT
9227540 TTAAAATATAATTTTT
1 TTAAAA-ATAATTTTT
*
9227556 TGAAAAA
1 TTAAAAA
9227563 AACAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
TTAAAAATAATTTTT
Found at i:9228223 original size:61 final size:62
Alignment explanation
Indices: 9228147--9228280 Score: 209
Period size: 62 Copynumber: 2.2 Consensus size: 62
9228137 AATCAATTAA
*
9228147 AAGGGTATTTTCGTAATTATAGTAAGAG-GATATTATAATAATTTTGA-TCAATTATAGTATT
1 AAGGGTATTTTCGTAATTATAGTAAGAGAGATATTATAATAATTTTGACT-AATTATAGTATG
* * *
9228208 AAGGATATTTTCGTAATTATGGTAAGAGAGGTATTATAATAATTTTGACTAATTATAGTATG
1 AAGGGTATTTTCGTAATTATAGTAAGAGAGATATTATAATAATTTTGACTAATTATAGTATG
9228270 AAGGGTATTTT
1 AAGGGTATTTT
9228281 AGATTTATAA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
61 26 0.39
62 39 0.59
63 1 0.02
ACGTcount: A:0.37, C:0.03, G:0.19, T:0.42
Consensus pattern (62 bp):
AAGGGTATTTTCGTAATTATAGTAAGAGAGATATTATAATAATTTTGACTAATTATAGTATG
Found at i:9229120 original size:396 final size:392
Alignment explanation
Indices: 9228098--9229269 Score: 1310
Period size: 396 Copynumber: 3.0 Consensus size: 392
9228088 ATTACTGTCA
* *
9228098 TATTATTATATAGATGTTAAAATTTAATATGTAATTATAAATCAATTAAAA-GGG-TATT-TTCG
1 TATTATTATATAGATGTTAAAATTTAATATGTAATTATGAAGCAATTAAAATGGGCT-TTATT-G
* *
9228160 TAATTATAGTAAGAGGATATTATAATAATTTTGATCAATTATAGTATTA-AGGATATTTTCGTAA
64 TAATTATAGTTAGAGGATATTATAATAATTTTGA-CAATTATAGTATTAGAGG-TATTTTTGTAA
* * * * * *** *
9228224 TTATGGTAAGAGAGG-TATTATAATAATTTTGACTAATTATAGTATGAAGGGTATTTTAG-ATTT
127 TTATGGTAAGA-AGGATATTATAGTAATTTTGACCATTTATGGTAAGAAAAATATTTTAGTAATT
* * * * *
9228287 ATAATAGGAATGGTAGTATAGTAATTTTGGCTATTA--AAGAAGAAAGGCATTATAGTAATTTAA
191 ATGACAAGAGTGGTAGTATAATAATTTTGGCTATTATGAA-AAG-AAGGCATTATAGTAATTTAA
9228350 ATGATGTAATTAAATAGATATAGAAGGGCATTTTT-TAAATTTTGGTAAAGGATGACATAAAATG
254 ATGATGTAATTAAATAGATATAGAAGGGCATTTTTAT-AATTTTGGTAAAGGATGACATAAAATG
** * *
9228414 CTACATGTG--AACAAATTATGAAATAATCAAAAGGGTATTAATGTAATTTT-GTTGG-G----G
318 -T-CATGTGTCAATGAATTATGAAATAATCAAAAGAGTATTAATGTAATTTTGGTTGGAGTTTAC
* *
9228471 GTTT-ATT-T-C
381 TTTTAATTATGT
* *
9228480 TA--A-T-TATAGATATTAAAATTTAATATGTAATTATGAAGCAACTAAAATGGGCATTTATTGT
1 TATTATTATATAGATGTTAAAATTTAATATGTAATTATGAAGCAATTAAAATGGGC-TTTATTGT
* * * * * *
9228541 AAGTATTG-TACGAGGATATTATAGTAATTTTGTATAATTATAATATT-GAAAGTATTTTTGTAA
65 AATTATAGTTA-GAGGATATTATAATAATTTTG-ACAATTATAGTATTAG-AGGTATTTTTGTAA
* * *
9228604 TTATGGTATG-AGGAGCATTATAGTAATTTTGATCATTTATGGTAAGAAAAATATTTTCA-TAAT
127 TTATGGTAAGAAGGA-TATTATAGTAATTTTGACCATTTATGGTAAGAAAAATATTTT-AGTAAT
* *
9228667 TATGGCAAGAGTAGTAGTATAATAATTTTGGCTATTTTATGAGAAA-AAGGCATTATAGTAATTT
190 TATGACAAGAGTGGTAGTATAATAATTTTGGCTA--TTATGA-AAAGAAGGCATTATAGTAATTT
* * * * * * *
9228731 ATATGATGTAATTAAATAGACATAGAAGGGCATTTTTATAATTTTGGTGAGGGATAACATCAAGT
252 AAATGATGTAATTAAATAGATATAGAAGGGCATTTTTATAATTTTGGTAAAGGATGACATAAAAT
9228796 GTCATGTGTCAATGAATTATGAAATAATCAAAAGAGTATTAATGTAATTTTGGTTGGAGTTTACT
317 GTCATGTGTCAATGAATTATGAAATAATCAAAAGAGTATTAATGTAATTTTGGTTGGAGTTTACT
9228861 TTTAATTATAGT
382 TTTAATTAT-GT
* *
9228873 TATTATTATATAGATGTTAAAATTTAATATGTAACTATGAAGCAATTAAAATGGGCTTTATTATA
1 TATTATTATATAGATGTTAAAATTTAATATGTAATTATGAAGCAATTAAAATGGGCTTTATTGTA
* *
9228938 ATTATAGTTAGAAGATATTATAATAATTTTGACCAATTATAGTATTAGAGGTATTTTTATAATTA
66 ATTATAGTTAGAGGATATTATAATAATTTTGA-CAATTATAGTATTAGAGGTATTTTTGTAATTA
* * * *
9229003 TGATAAGAAGGATATTATAGTAATTCTGACCATTTATGGTAGGAAAAATATTTTTGTAATTATGA
130 TGGTAAGAAGGATATTATAGTAATTTTGACCATTTATGGTAAGAAAAATATTTTAGTAATTATGA
* * *
9229068 CATGAGTGGTAGTATAATAATTTTGGCTATTGATGAAAAGAACGGTATTATAGTAATTTACATGA
195 CAAGAGTGGTAGTATAATAATTTTGGCTATT-ATGAAAAGAA-GGCATTATAGTAATTTAAATGA
* * ** **
9229133 TGTAATTAAATAGATATAAAAGGGTATTTTTATAATTTTGACAAA-GATGACATAAAATGTCACA
258 TGTAATTAAATAGATATAGAAGGGCATTTTTATAATTTTGGTAAAGGATGACATAAAATGTCATG
* * * *
9229197 TATCAATGAATTATGAAACAATTAAAA-AGGTATTAATGTAGTTTTGG-TGGAGTTTACTTTTAA
323 TGTCAATGAATTATGAAATAATCAAAAGA-GTATTAATGTAATTTTGGTTGGAGTTTACTTTTAA
9229260 TTATTGT
387 TTA-TGT
9229267 TAT
1 TAT
9229270 AGATACGTAA
Statistics
Matches: 662, Mismatches: 84, Indels: 76
0.81 0.10 0.09
Matches are distributed among these distances:
378 42 0.06
379 5 0.01
380 93 0.14
381 42 0.06
382 3 0.00
383 116 0.18
384 6 0.01
385 4 0.01
386 1 0.00
389 3 0.00
390 3 0.00
391 1 0.00
393 2 0.00
394 30 0.05
395 64 0.10
396 195 0.29
397 52 0.08
ACGTcount: A:0.39, C:0.04, G:0.17, T:0.40
Consensus pattern (392 bp):
TATTATTATATAGATGTTAAAATTTAATATGTAATTATGAAGCAATTAAAATGGGCTTTATTGTA
ATTATAGTTAGAGGATATTATAATAATTTTGACAATTATAGTATTAGAGGTATTTTTGTAATTAT
GGTAAGAAGGATATTATAGTAATTTTGACCATTTATGGTAAGAAAAATATTTTAGTAATTATGAC
AAGAGTGGTAGTATAATAATTTTGGCTATTATGAAAAGAAGGCATTATAGTAATTTAAATGATGT
AATTAAATAGATATAGAAGGGCATTTTTATAATTTTGGTAAAGGATGACATAAAATGTCATGTGT
CAATGAATTATGAAATAATCAAAAGAGTATTAATGTAATTTTGGTTGGAGTTTACTTTTAATTAT
GT
Found at i:9229397 original size:25 final size:26
Alignment explanation
Indices: 9229369--9229449 Score: 78
Period size: 25 Copynumber: 3.2 Consensus size: 26
9229359 TAAATATGGC
*
9229369 TAATCATAATAGGA-GAGCAATTTTA-
1 TAATTATAATAGGATGAGC-ATTTTAG
* * *
9229394 TAATTATGATAGTATGGGCATTTTAG
1 TAATTATAATAGGATGAGCATTTTAG
* *
9229420 TAATTATAATAGGAAGA-CATTATAG
1 TAATTATAATAGGATGAGCATTTTAG
9229445 TAATT
1 TAATT
9229450 TTAGTTGATT
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
25 29 0.64
26 16 0.36
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (26 bp):
TAATTATAATAGGATGAGCATTTTAG
Found at i:9230957 original size:75 final size:75
Alignment explanation
Indices: 9230835--9231013 Score: 231
Period size: 75 Copynumber: 2.4 Consensus size: 75
9230825 CTATGGTAAA
* *
9230835 GGATCGATCCTCTTTTAAAA-GGATCGATCGGTTGCTCAAACAGAATGC-CCCCTAAGTCTGAAA
1 GGATCGATCCCCTCTTAAAAGGGATCGATCGGTTGCTCAAACAGAATGCTCCCC-AAGTCTGAAA
*
9230898 ACCCACAAAAG
65 ACCCAAAAAAG
* * * *
9230909 GGATCGATCCCCTCTTAAAAGGGATCGATTGGTTGCTCAAATATAATGCTCCCCAAGTTTGAAAA
1 GGATCGATCCCCTCTTAAAAGGGATCGATCGGTTGCTCAAACAGAATGCTCCCCAAGTCTGAAAA
*
9230974 TCCAAAAAAG
66 CCCAAAAAAG
9230984 GGATCGATCCCC-C-TACATAAGGGATCGATC
1 GGATCGATCCCCTCTTA-A-AAGGGATCGATC
9231014 ACCTAAAGAA
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
73 2 0.02
74 20 0.22
75 66 0.72
76 4 0.04
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.23
Consensus pattern (75 bp):
GGATCGATCCCCTCTTAAAAGGGATCGATCGGTTGCTCAAACAGAATGCTCCCCAAGTCTGAAAA
CCCAAAAAAG
Found at i:9235928 original size:16 final size:16
Alignment explanation
Indices: 9235907--9235939 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
9235897 AATTGCATTG
*
9235907 TATTCTCAAAATTTTA
1 TATTCTCAAAAATTTA
9235923 TATTCTCAAAAATTTA
1 TATTCTCAAAAATTTA
9235939 T
1 T
9235940 TTTCAAGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTCTCAAAAATTTA
Found at i:9239913 original size:2 final size:2
Alignment explanation
Indices: 9239906--9239935 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9239896 TCTACAAACT
9239906 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9239936 AAGGAAACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9241486 original size:19 final size:18
Alignment explanation
Indices: 9241458--9241493 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
9241448 TATCACCTAA
9241458 AATTATTATAATATAATT
1 AATTATTATAATATAATT
*
9241476 AATTAATTATAATTTAAT
1 AATT-ATTATAATATAAT
9241494 ATTATATAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTATTATAATATAATT
Found at i:9242943 original size:143 final size:144
Alignment explanation
Indices: 9242712--9243261 Score: 603
Period size: 143 Copynumber: 3.8 Consensus size: 144
9242702 TATTGTTAGG
* * * * *
9242712 CCTCAAAAGGAATGAAATTACTAAGATGCCCTTTATGGGTATTTTTGTAATTTGACCTTTTTGAG
1 CCTCAAAAGGAGTGAAATTACTAAAATGCCCTTTAAGAGTATTTTTGTAATTTTACCTTTTTGAG
* * * *
9242777 ATTATTTTTTTGA-GAAAAACTCCAAATCATGTTTAAATATTAGTTCATGAATTTTGATGCATTA
66 ATTA-GTTTTTAATGAAAAACTCCAGATCATGTTTAAATATTATTTCATGAATTTTGATGCATTA
*
9242841 AAAATTTTGATTGTA
130 AAAATATTGATTGTA
* * * *
9242856 CCTCAAAAGGAGTGAAATTACTAAAATGCTC-TTAAGGGTATTTTTATAATTTTACTTTTTTGAG
1 CCTCAAAAGGAGTGAAATTACTAAAATGCCCTTTAAGAGTATTTTTGTAATTTTACCTTTTTGAG
* * * * * * **
9242920 GTTAGTTTTTAATGAATAGCTCCATATCAGGTTAAAATATTATTTCATGAATTTTGATGCATCGA
66 ATTAGTTTTTAATGAAAAACTCCAGATCATGTTTAAATATTATTTCATGAATTTTGATGCATTAA
* *
9242985 AAATCTTGATTATA
131 AAATATTGATTGTA
* * *
9242999 CCTCAAAAGGAGTGAAATTACTAAAATGCCATTTATA-AGTATTTTCGTAA-TTT-GCTTTTT-A
1 CCTCAAAAGGAGTGAAATTACTAAAATGCCCTTTA-AGAGTATTTTTGTAATTTTACCTTTTTGA
** * *
9243060 GATTAGTTTTTCACAAAAAAAACTCCAGATTATGTTTAAATATTATTTCATAAATTTTGATGCAT
65 GATTAGTTTTT-A-ATGAAAAACTCCAGATCATGTTTAAATATTATTTCATGAATTTTGATGCAT
*
9243125 TAAAAATATTGATTGCA
128 TAAAAATATTGATTGTA
* * * * * * *
9243142 CCCCAAAATGAGTGAAATTATTAAAATGCCCTTTAAAAGTTTTTTTGTAATTTAACCTTTTCGAG
1 CCTCAAAAGGAGTGAAATTACTAAAATGCCCTTTAAGAGTATTTTTGTAATTTTACCTTTTTGAG
* * * * *
9243207 GTTAGATTTTCAT-AAAAACTCCAGATCATAG-TTAAATATTATTTTATGATTTTTG
66 ATTAGTTTTTAATGAAAAACTCCAGATCAT-GTTTAAATATTATTTCATGAATTTTG
9243262 GGCTATTAAA
Statistics
Matches: 337, Mismatches: 59, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
141 11 0.03
142 13 0.04
143 252 0.75
144 45 0.13
145 6 0.02
146 10 0.03
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (144 bp):
CCTCAAAAGGAGTGAAATTACTAAAATGCCCTTTAAGAGTATTTTTGTAATTTTACCTTTTTGAG
ATTAGTTTTTAATGAAAAACTCCAGATCATGTTTAAATATTATTTCATGAATTTTGATGCATTAA
AAATATTGATTGTA
Found at i:9243246 original size:286 final size:286
Alignment explanation
Indices: 9242712--9243261 Score: 712
Period size: 286 Copynumber: 1.9 Consensus size: 286
9242702 TATTGTTAGG
* * ** *
9242712 CCTCAAAAGGAATGAAATTACTAAGATGCCCTTTATGGGTATTTTTGTAATTTGACCTTTTTGAG
1 CCTCAAAAGGAATGAAATTACTAAAATGCCATTTATAAGTATTTTCGTAATTTGA-CTTTTTGAG
*** * *
9242777 ATTATTTTTTTGAGAAAAACTCCAAATCATGTTTAAATATTAGTTCATGAATTTTGATGCATTAA
65 ATTATTTTTACAAAAAAAACTCCAAATCATGTTTAAATATTAGTTCATAAATTTTGATGCATTAA
* * * * **
9242842 AAATTTTGATTGTACCTCAAAAGGAGTGAAATTACTAAAATGCTCTTAAGGGTATTTTTATAATT
130 AAATATTGATTGCACCCCAAAAGGAGTGAAATTACTAAAATGCCCTTAAAAGTATTTTTATAATT
* * * * * * * *
9242907 TTACTTTTTTGAGGTTAGTTTTTAATGAATAGCTCCATATCAGGTTAAAATATTATTTCATGAAT
195 TAACCTTTTCGAGGTTAGATTTTAATGAAAAACTCCAGATCAAGTTAAAATATTATTTCATGAAT
9242972 TTTGATGCATCGAAAATCTTGATTATA
260 TTTGATGCATCGAAAATCTTGATTATA
*
9242999 CCTCAAAAGGAGTGAAATTACTAAAATGCCATTTATAAGTATTTTCGTAATTTG-CTTTTT-AGA
1 CCTCAAAAGGAATGAAATTACTAAAATGCCATTTATAAGTATTTTCGTAATTTGACTTTTTGAGA
* * *
9243062 TTAGTTTTTCACAAAAAAAACTCCAGATTATGTTTAAATATTATTTCATAAATTTTGATGCATTA
66 TTA-TTTTT-ACAAAAAAAACTCCAAATCATGTTTAAATATTAGTTCATAAATTTTGATGCATTA
* * * *
9243127 AAAATATTGATTGCACCCCAAAATGAGTGAAATTATTAAAATGCCCTTTAAAAGTTTTTTTGTAA
129 AAAATATTGATTGCACCCCAAAAGGAGTGAAATTACTAAAATGCCC-TTAAAAGTATTTTTATAA
* *
9243192 TTTAACCTTTTCGAGGTTAGATTTTCAT-AAAAACTCCAGATCATAGTT-AAATATTATTTTATG
193 TTTAACCTTTTCGAGGTTAGATTTTAATGAAAAACTCCAGATCA-AGTTAAAATATTATTTCATG
*
9243255 ATTTTTG
257 AATTTTG
9243262 GGCTATTAAA
Statistics
Matches: 224, Mismatches: 35, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
284 6 0.03
285 11 0.05
286 119 0.53
287 88 0.39
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (286 bp):
CCTCAAAAGGAATGAAATTACTAAAATGCCATTTATAAGTATTTTCGTAATTTGACTTTTTGAGA
TTATTTTTACAAAAAAAACTCCAAATCATGTTTAAATATTAGTTCATAAATTTTGATGCATTAAA
AATATTGATTGCACCCCAAAAGGAGTGAAATTACTAAAATGCCCTTAAAAGTATTTTTATAATTT
AACCTTTTCGAGGTTAGATTTTAATGAAAAACTCCAGATCAAGTTAAAATATTATTTCATGAATT
TTGATGCATCGAAAATCTTGATTATA
Found at i:9247306 original size:14 final size:15
Alignment explanation
Indices: 9247287--9247315 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
9247277 TGTCCCTGCA
9247287 AATTTTTT-TTTTAT
1 AATTTTTTCTTTTAT
9247301 AATTTTTTCTTTTAT
1 AATTTTTTCTTTTAT
9247316 TTGACTCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (15 bp):
AATTTTTTCTTTTAT
Found at i:9247375 original size:22 final size:20
Alignment explanation
Indices: 9247347--9247393 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
9247337 ACTGTAACCC
9247347 ATAAAAAGAAAAATAGAGAAAA
1 ATAAAAAGAAAAA-AGA-AAAA
* *
9247369 ATAAAAAGGAAAAGGAAAAA
1 ATAAAAAGAAAAAAGAAAAA
9247389 ATAAA
1 ATAAA
9247394 TAGTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 9 0.39
21 2 0.09
22 12 0.52
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.09
Consensus pattern (20 bp):
ATAAAAAGAAAAAAGAAAAA
Found at i:9248062 original size:2 final size:2
Alignment explanation
Indices: 9248021--9248047 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9248011 TCTCTCTCTT
9248021 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
9248048 TAGTTTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9249930 original size:11 final size:11
Alignment explanation
Indices: 9249914--9249952 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
9249904 TGTTGATGAT
9249914 TTACTACTAAG
1 TTACTACTAAG
* * *
9249925 TTACTAATGAT
1 TTACTACTAAG
9249936 TTACTACTAAG
1 TTACTACTAAG
9249947 TTACTA
1 TTACTA
9249953 ATGATTTGTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (11 bp):
TTACTACTAAG
Found at i:9249957 original size:44 final size:41
Alignment explanation
Indices: 9249837--9250176 Score: 139
Period size: 44 Copynumber: 7.6 Consensus size: 41
9249827 TATTGTTAAA
* * * *
9249837 TTATCAATAATTTACTACTAAGTTAGCATTGATTTGCTACTAA-
1 TTAT-AATGATTTACTACTAAGTTA-TAATGATTTACTA-TAAG
* * * *
9249880 TATATAAATGATTTACTATTAAATTGTTGATGATTTACTACTAAG
1 T-TAT-AATGATTTACTACTAAGTT-ATAATGATTTACTA-TAAG
**
9249925 TTACTAATGATTTACTACTAAGTTACTAATGATTTGTTATAAAG
1 TTA-TAATGATTTACTACTAAGTTA-TAATGATTTACTAT-AAG
* *
9249969 TTATAATTGATTTACTATTAATTTATCAATGATTTACTATAAAG
1 TTATAA-TGATTTACTACTAAGTTAT-AATGATTTACTAT-AAG
* *
9250013 TTATCAATAATTAACTGATTTACTACTAAATTATAACTGATTTA-TAATTAAA
1 ---T---T-A-TAA-TGATTTACTACTAAGTTATAA-TGATTTACT-A-TAAG
* * * *
9250065 TTATTAGTGATTTACTACTAAGTTATTAATAATTTACATCTAAA
1 TTA-TAATGATTTACTACTAAGTTA-TAATGATTTAC-TATAAG
* * *
9250109 TTATCAAT-AGTTTACTATTATGTTATTATAT-ATTTACTATTATG
1 TTAT-AATGA-TTTACTACTAAGTTA-TA-ATGATTTACTA-TAAG
* *
9250153 TTATCATTGATTTACTACTTAGTT
1 TTAT-AATGATTTACTACTAAGTT
9250177 TTAGATTATT
Statistics
Matches: 233, Mismatches: 37, Indels: 53
0.72 0.11 0.16
Matches are distributed among these distances:
43 9 0.04
44 172 0.74
45 12 0.05
46 2 0.01
47 1 0.00
49 1 0.00
50 1 0.00
51 4 0.02
52 30 0.13
53 1 0.00
ACGTcount: A:0.37, C:0.09, G:0.08, T:0.46
Consensus pattern (41 bp):
TTATAATGATTTACTACTAAGTTATAATGATTTACTATAAG
Found at i:9250017 original size:22 final size:23
Alignment explanation
Indices: 9249802--9250020 Score: 142
Period size: 22 Copynumber: 10.0 Consensus size: 23
9249792 GTTATCAGCA
*
9249802 ATTTACTAC-AAAGCTATCAATG
1 ATTTACTACTAAAGTTATCAATG
* * ** *
9249824 ATATATTGTTAAA-TTATCAATA
1 ATTTACTACTAAAGTTATCAATG
* *
9249846 ATTTACTACT-AAGTTAGCATTG
1 ATTTACTACTAAAGTTATCAATG
* *
9249868 ATTTGCTACT-AA-TATATAAATG
1 ATTTACTACTAAAGT-TATCAATG
* * **
9249890 ATTTACTATTAAA-TTGTTGATG
1 ATTTACTACTAAAGTTATCAATG
9249912 ATTTACTACT-AAGTTA-CTAATG
1 ATTTACTACTAAAGTTATC-AATG
9249934 ATTTACTACT-AAGTTA-CTAATG
1 ATTTACTACTAAAGTTATC-AATG
**
9249956 ATTTGTTA-TAAAGTTAT-AATTG
1 ATTTACTACTAAAGTTATCAA-TG
* *
9249978 ATTTACTA-TTAATTTATCAATG
1 ATTTACTACTAAAGTTATCAATG
9250000 ATTTACTA-TAAAGTTATCAAT
1 ATTTACTACTAAAGTTATCAAT
9250021 AATTAACTGA
Statistics
Matches: 153, Mismatches: 34, Indels: 20
0.74 0.16 0.10
Matches are distributed among these distances:
21 8 0.05
22 137 0.90
23 8 0.05
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.43
Consensus pattern (23 bp):
ATTTACTACTAAAGTTATCAATG
Found at i:9250041 original size:96 final size:96
Alignment explanation
Indices: 9249932--9250117 Score: 234
Period size: 96 Copynumber: 1.9 Consensus size: 96
9249922 AAGTTACTAA
* * * * * *
9249932 TGATTTACTACTAAGTTACTAA-TGATTTGTTA-TAAAGTTATAATTGATTTACTATTAATTTAT
1 TGATTTACTACTAAATTA-TAACTGATTTATAATTAAA-TTATAAGTGATTTACTACTAAGTTAT
*
9249995 CAATGATTTAC-TATAAAGTTATCAATAATTAAC
64 CAATAATTTACATATAAA-TTATCAATAATTAAC
* *
9250028 TGATTTACTACTAAATTATAACTGATTTATAATTAAATTATTAGTGATTTACTACTAAGTTATTA
1 TGATTTACTACTAAATTATAACTGATTTATAATTAAATTATAAGTGATTTACTACTAAGTTATCA
*
9250093 ATAATTTACATCTAAATTATCAATA
66 ATAATTTACATATAAATTATCAATA
9250118 GTTTACTATT
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
95 3 0.04
96 65 0.84
97 9 0.12
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.45
Consensus pattern (96 bp):
TGATTTACTACTAAATTATAACTGATTTATAATTAAATTATAAGTGATTTACTACTAAGTTATCA
ATAATTTACATATAAATTATCAATAATTAAC
Found at i:9250050 original size:22 final size:22
Alignment explanation
Indices: 9250024--9250112 Score: 85
Period size: 22 Copynumber: 4.0 Consensus size: 22
9250014 TATCAATAAT
9250024 TAACTGATTTACTACTAAATTA
1 TAACTGATTTACTACTAAATTA
*
9250046 TAACTGATTTA-TAATTAAATTA
1 TAACTGATTTACT-ACTAAATTA
* * *
9250068 TTAGTGATTTACTACTAAGTTA
1 TAACTGATTTACTACTAAATTA
*
9250090 TTAA-TAATTTAC-ATCTAAATTA
1 -TAACTGATTTACTA-CTAAATTA
9250112 T
1 T
9250113 CAATAGTTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
21 3 0.05
22 49 0.89
23 3 0.05
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (22 bp):
TAACTGATTTACTACTAAATTA
Found at i:9250117 original size:22 final size:22
Alignment explanation
Indices: 9250030--9250221 Score: 72
Period size: 22 Copynumber: 8.7 Consensus size: 22
9250020 TAATTAACTG
*
9250030 ATTTACTACTAAATTAT-AACTG
1 ATTTACTACTAAATTATCAA-TA
* * * *
9250052 ATTTA-TAATTAAATTATTAGTG
1 ATTTACT-ACTAAATTATCAATA
* *
9250074 ATTTACTACTAAGTTATTAATA
1 ATTTACTACTAAATTATCAATA
9250096 ATTTAC-ATCTAAATTATCAATA
1 ATTTACTA-CTAAATTATCAATA
* * ** *
9250118 GTTTACTATTATGTTAT-TATA
1 ATTTACTACTAAATTATCAATA
* ** * *
9250139 TATTTACTATTATGTTATCATTG
1 -ATTTACTACTAAATTATCAATA
* * * *
9250162 ATTTACTACTTAGTT-TTAGATT
1 ATTTACTACTAAATTATCA-ATA
* *
9250184 ATTTATTACAAAATTATCACA-A
1 ATTTACTACTAAATTATCA-ATA
*
9250206 ATTTATTACTAAATTA
1 ATTTACTACTAAATTA
9250222 ACCATGATTC
Statistics
Matches: 130, Mismatches: 31, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
21 7 0.05
22 116 0.89
23 7 0.05
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (22 bp):
ATTTACTACTAAATTATCAATA
Found at i:9250134 original size:118 final size:118
Alignment explanation
Indices: 9249910--9250126 Score: 257
Period size: 118 Copynumber: 1.8 Consensus size: 118
9249900 AAATTGTTGA
* * **
9249910 TGATTTACTACTAAGTTACTAATGATTTACTACTAAGTTACTAATGATTTGTTATAAAGTTATAA
1 TGATTTACTACTAAATTACTAATGATTTACTACTAAATTACTAATGATTTACTATAAAGTTATAA
* *
9249975 TTGATTTACTATTAATTTATCAATGATTTACTATAAAGTTATCAATAATTAAC
66 TTAATTTACTATTAAATTATCAATGATTTACTATAAAGTTATCAATAATTAAC
* * *
9250028 TGATTTACTACTAAATTA-TAACTGATTTA-TAATTAAATTATTAGTGATTTACTACT-AAGTTA
1 TGATTTACTACTAAATTACTAA-TGATTTACT-ACTAAATTACTAATGATTTACTA-TAAAGTTA
9250090 TTAA-TAATTTAC-ATCTAAATTATCAAT-AGTTTACTAT
63 -TAATTAATTTACTAT-TAAATTATCAATGA-TTTACTAT
9250127 TATGTTATTA
Statistics
Matches: 84, Mismatches: 9, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
117 7 0.08
118 73 0.87
119 4 0.05
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (118 bp):
TGATTTACTACTAAATTACTAATGATTTACTACTAAATTACTAATGATTTACTATAAAGTTATAA
TTAATTTACTATTAAATTATCAATGATTTACTATAAAGTTATCAATAATTAAC
Found at i:9250146 original size:162 final size:162
Alignment explanation
Indices: 9249866--9250169 Score: 372
Period size: 162 Copynumber: 1.9 Consensus size: 162
9249856 AAGTTAGCAT
* *
9249866 TGATTTGCTACTAATATATAAATGATTTACTATTAAATTGTTGATGATTTACTACTAAGTTACTA
1 TGATTTACTACTAATATATAAATGATTTACTATTAAATTATTGATGATTTACTACTAAGTTACTA
* * **
9249931 ATGATTTACTACTAAGTTACTAATGATTTGTTATAAAGTTATAATTGATTTACTATTAAT-TTAT
66 ATAATTTACTACTAAATTACTAATGATTTACTATAAAGTTATAATTGATTTACTATT-ATGTTAT
9249995 CAATGATTTACTATAAAGTTATCAATAATTAAC
130 CAATGATTTACTATAAAGTTATCAATAATTAAC
*
9250028 TGATTTACTACTAA-ATTATAACTGATTTA-TAATTAAATTATT-AGTGATTTACTACTAAGTTA
1 TGATTTACTACTAATA-TATAAATGATTTACT-ATTAAATTATTGA-TGATTTACTACTAAGTTA
* * * *
9250090 TTAATAATTTAC-ATCTAAATTA-TCAAT-AGTTTACTATTATGTTATTATAT-ATTTACTATTA
63 CTAATAATTTACTA-CTAAATTACT-AATGA-TTTACTATAAAGTTATAAT-TGATTTACTATTA
*
9250151 TGTTATCATTGATTTACTA
124 TGTTATCAATGATTTACTA
9250170 CTTAGTTTTA
Statistics
Matches: 122, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
161 8 0.07
162 113 0.93
163 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.08, T:0.46
Consensus pattern (162 bp):
TGATTTACTACTAATATATAAATGATTTACTATTAAATTATTGATGATTTACTACTAAGTTACTA
ATAATTTACTACTAAATTACTAATGATTTACTATAAAGTTATAATTGATTTACTATTATGTTATC
AATGATTTACTATAAAGTTATCAATAATTAAC
Found at i:9250470 original size:22 final size:22
Alignment explanation
Indices: 9250445--9250496 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
9250435 ACCGAAGCTG
* *
9250445 ATTTACTATTAAATTATCATTA
1 ATTTACTATTAAATTAGCAATA
*
9250467 ATTTACTATTAAGTTAGCAATA
1 ATTTACTATTAAATTAGCAATA
*
9250489 ATTAACTA
1 ATTTACTA
9250497 CAACATTATC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (22 bp):
ATTTACTATTAAATTAGCAATA
Found at i:9250829 original size:22 final size:22
Alignment explanation
Indices: 9250780--9250926 Score: 118
Period size: 22 Copynumber: 6.7 Consensus size: 22
9250770 TATAAAAAAA
* * * *
9250780 AAGTTATGAATAATTGACAATT
1 AAGTTATGAATGATTTACTACT
* * *
9250802 ATGTTATCAATTATTTACTACT
1 AAGTTATGAATGATTTACTACT
* *
9250824 AAGTTATGAATTACTTACTACT
1 AAGTTATGAATGATTTACTACT
* * * * *
9250846 AAATTATCAATAATTTATTTCT
1 AAGTTATGAATGATTTACTACT
* *
9250868 AA-TTATGAATGATTTACCATT
1 AAGTTATGAATGATTTACTACT
*
9250889 AAGTTATGAATGATTTA-TCAAT
1 AAGTTATGAATGATTTACT-ACT
9250911 AAGTTATGAATGATTT
1 AAGTTATGAATGATTT
9250927 TTATTAAATT
Statistics
Matches: 100, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
21 15 0.15
22 85 0.85
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.44
Consensus pattern (22 bp):
AAGTTATGAATGATTTACTACT
Found at i:9250922 original size:44 final size:44
Alignment explanation
Indices: 9250780--9250926 Score: 136
Period size: 44 Copynumber: 3.4 Consensus size: 44
9250770 TATAAAAAAA
* * * *
9250780 AAGTTATGAATAATTGACAATTATGTTATCAATTATTTA-CTACT
1 AAGTTATGAATGATTTACAATTAAGTTATCAATAATTTATC-ACT
* * * * * **
9250824 AAGTTATGAATTACTTACTACTAAATTATCAATAATTTATTTCT
1 AAGTTATGAATGATTTACAATTAAGTTATCAATAATTTATCACT
* * * *
9250868 AA-TTATGAATGATTTACCATTAAGTTATGAATGATTTATCAAT
1 AAGTTATGAATGATTTACAATTAAGTTATCAATAATTTATCACT
9250911 AAGTTATGAATGATTT
1 AAGTTATGAATGATTT
9250927 TTATTAAATT
Statistics
Matches: 81, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
43 33 0.41
44 48 0.59
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.44
Consensus pattern (44 bp):
AAGTTATGAATGATTTACAATTAAGTTATCAATAATTTATCACT
Found at i:9250933 original size:43 final size:44
Alignment explanation
Indices: 9250870--9250970 Score: 109
Period size: 43 Copynumber: 2.3 Consensus size: 44
9250860 TTATTTCTAA
* *
9250870 TTATGAATGATTTACCATTAAGTTA-TGAATGATTTATCAATAAG
1 TTATGAATGATTTACCATTAAATTATTG-ATGATTTACCAATAAG
** * *
9250914 TTATGAATGATTT-TTATTAAATTATTGGTGATTTACCATTAAG
1 TTATGAATGATTTACCATTAAATTATTGATGATTTACCAATAAG
9250957 TTATTG-ATGATTTA
1 TTA-TGAATGATTTA
9250971 TTGTAAATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
43 31 0.65
44 17 0.35
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.47
Consensus pattern (44 bp):
TTATGAATGATTTACCATTAAATTATTGATGATTTACCAATAAG
Found at i:9250960 original size:22 final size:22
Alignment explanation
Indices: 9250780--9250970 Score: 113
Period size: 22 Copynumber: 8.8 Consensus size: 22
9250770 TATAAAAAAA
* * *
9250780 AAGTTATGAATAATTGACAATT
1 AAGTTATGAATGATTTACCATT
* * * * *
9250802 ATGTTATCAATTATTTACTACT
1 AAGTTATGAATGATTTACCATT
* * * *
9250824 AAGTTATGAATTACTTACTACT
1 AAGTTATGAATGATTTACCATT
* * * **
9250846 AAATTATCAATAATTTA-TTTCT
1 AAGTTATGAATGATTTACCAT-T
9250868 AA-TTATGAATGATTTACCATT
1 AAGTTATGAATGATTTACCATT
* *
9250889 AAGTTATGAATGATTTATCAAT
1 AAGTTATGAATGATTTACCATT
**
9250911 AAGTTATGAATGATTT-TTATT
1 AAGTTATGAATGATTTACCATT
* *
9250932 AAATTATTG-GTGATTTACCATT
1 AAGTTA-TGAATGATTTACCATT
9250954 AAGTTATTG-ATGATTTA
1 AAGTTA-TGAATGATTTA
9250971 TTGTAAATTT
Statistics
Matches: 135, Mismatches: 29, Indels: 10
0.78 0.17 0.06
Matches are distributed among these distances:
21 30 0.22
22 105 0.78
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.45
Consensus pattern (22 bp):
AAGTTATGAATGATTTACCATT
Found at i:9251143 original size:22 final size:22
Alignment explanation
Indices: 9251073--9251144 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
9251063 ACGTTATTAG
** *
9251073 TGATTTACTCCTA-ATTATCAA
1 TGATTTACTATTATATTATCAT
* *
9251094 TGATTTA-TAGTTATATTTTTAT
1 TGATTTACTA-TTATATTATCAT
9251116 AT-ATTTACTATTATATTATCAT
1 -TGATTTACTATTATATTATCAT
9251138 TGATTTA
1 TGATTTA
9251145 GTACTTAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
20 1 0.03
21 10 0.26
22 25 0.64
23 3 0.08
ACGTcount: A:0.32, C:0.08, G:0.06, T:0.54
Consensus pattern (22 bp):
TGATTTACTATTATATTATCAT
Found at i:9252184 original size:148 final size:149
Alignment explanation
Indices: 9251906--9252197 Score: 336
Period size: 148 Copynumber: 2.0 Consensus size: 149
9251896 AACCTTTGTG
9251906 TTCTCCATAAAAAATTTCTTCTACTAAATGAAAAAAATAGTATATTTTTAATTGTTGATTCATTC
1 TTCTCCATAAAAAATTTCTTCTACTAAATGAAAAAAATAGTATATTTTTAATTGTTGATTCATTC
* * * * * * ***
9251971 TTATTATCATCGTTCAAATTAACTTTTTTGATATCTTGATATCGATCAACTTCTCTATTCAGAAA
66 TTAGTAACATCATTCAAATTAACTTTTTTAATATCTTGATACCAATCAACTTAAATATTCAGAAA
*
9252036 GGGTAAAGAATATTTTGCA
131 GAGTAAAGAATATTTTGCA
* * * * * *
9252055 TTCTCTATAAAAAATTTCTTCTA-TCATATG-AAAAAATGGTATGTTTTTAATTGTTGTTTTATT
1 TTCTCCATAAAAAATTTCTTCTACT-AAATGAAAAAAATAGTATATTTTTAATTGTTGATTCATT
* * * * * * * **
9252118 TTTAGTAACGTCATTCAAATTGACTTTTTTAATATTTTGATGCCAATTAATTTAAATATTTGGAA
65 CTTAGTAACATCATTCAAATTAACTTTTTTAATATCTTGATACCAATCAACTTAAATATTCAGAA
9252183 AGAGTAAAGAATATT
130 AGAGTAAAGAATATT
9252198 ATGAGTGGTC
Statistics
Matches: 117, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
148 91 0.78
149 26 0.22
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (149 bp):
TTCTCCATAAAAAATTTCTTCTACTAAATGAAAAAAATAGTATATTTTTAATTGTTGATTCATTC
TTAGTAACATCATTCAAATTAACTTTTTTAATATCTTGATACCAATCAACTTAAATATTCAGAAA
GAGTAAAGAATATTTTGCA
Found at i:9253091 original size:79 final size:75
Alignment explanation
Indices: 9252998--9253203 Score: 244
Period size: 79 Copynumber: 2.7 Consensus size: 75
9252988 TATCTTCAAG
*
9252998 GAAAATTGATACTTTCAACTTTTCCTTAAAAACATTTCTTTTGAAACATA-ATTTTTGAGAAAAG
1 GAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTCTTTTGAAA-ATATATTTTTGA-AAAA-
*
9253062 TTTTTATTTTCTAAA
63 -TTTTATTTTAT-AA
** *
9253077 GAAAATTGATACTTTCAACTTTTTATTAAAAATGTTTCTTTT-AAAATATATTTTTGAAAAATTT
1 GAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTCTTTTGAAAATATATTTTTGAAAAATTT
9253141 TATTTTATAA
66 TATTTTATAA
* * *
9253151 GAAAAATTGATATTTTC-ATTTTTCCTT-AAAATATTT-TTTTG-AAATATGTTTTT
1 G-AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTCTTTTGAAAATATATTTTT
9253204 ATTTTAAGAA
Statistics
Matches: 113, Mismatches: 11, Indels: 13
0.82 0.08 0.09
Matches are distributed among these distances:
72 15 0.13
73 8 0.07
74 10 0.09
75 24 0.21
77 7 0.06
78 11 0.10
79 38 0.34
ACGTcount: A:0.36, C:0.08, G:0.07, T:0.49
Consensus pattern (75 bp):
GAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTCTTTTGAAAATATATTTTTGAAAAATTT
TATTTTATAA
Found at i:9254633 original size:34 final size:34
Alignment explanation
Indices: 9254593--9254688 Score: 113
Period size: 34 Copynumber: 2.8 Consensus size: 34
9254583 AAAAACTGGT
* *
9254593 GATTCGCAAGAGTTGGAGATTTGCAAGAATTTCA
1 GATTCGCAAGAATTGAAGATTTGCAAGAATTTCA
* * *
9254627 TG-TTCGCAAAAATTGAAGATTTGTAAGATTTTCA
1 -GATTCGCAAGAATTGAAGATTTGCAAGAATTTCA
**
9254661 GATTCATAAGAATTGAAGATTTGCAAGA
1 GATTCGCAAGAATTGAAGATTTGCAAGA
9254689 TTTTTAAAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
33 1 0.02
34 49 0.96
35 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.32
Consensus pattern (34 bp):
GATTCGCAAGAATTGAAGATTTGCAAGAATTTCA
Found at i:9254688 original size:17 final size:17
Alignment explanation
Indices: 9254593--9254779 Score: 56
Period size: 17 Copynumber: 10.6 Consensus size: 17
9254583 AAAAACTGGT
* * *
9254593 GATTCGCAAGAGTTGGA
1 GATTTGCAAGAATTGAA
* *
9254610 GATTTGCAAGAATTTCAT
1 GATTTGCAAGAA-TTGAA
* *
9254628 G-TTCGCAAAAATTGAA
1 GATTTGCAAGAATTGAA
* * **
9254644 GATTTGTAAGATTTTCA
1 GATTTGCAAGAATTGAA
***
9254661 GATTCATAAGAATTGAA
1 GATTTGCAAGAATTGAA
* *
9254678 GATTTGCAAGATTTTTAA
1 GATTTGCAAGA-ATTGAA
* *
9254696 AATTCACTAGGCAAGAACTCGAA
1 GATT---T--GCAAGAA-TTGAA
* *
9254719 GATTTGCAAGAGTTAAA
1 GATTTGCAAGAATTGAA
* *
9254736 GATTTGTAAGAGCTT--A
1 GATTTGCAAGA-ATTGAA
*
9254752 GATTTGCAAAAATTGAA
1 GATTTGCAAGAATTGAA
*
9254769 GATTGGCAAGA
1 GATTTGCAAGA
9254780 TTTTTTGGTT
Statistics
Matches: 118, Mismatches: 40, Indels: 24
0.65 0.22 0.13
Matches are distributed among these distances:
15 2 0.02
16 14 0.12
17 70 0.59
18 18 0.15
20 1 0.01
21 1 0.01
23 12 0.10
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (17 bp):
GATTTGCAAGAATTGAA
Found at i:9254938 original size:22 final size:22
Alignment explanation
Indices: 9254875--9254951 Score: 61
Period size: 23 Copynumber: 3.5 Consensus size: 22
9254865 AAAGGCTCTT
* *
9254875 ATTCAAAAATTTTAGTGTTTCAC
1 ATTCAAAAATTTTAGGGTTT-TC
* * *
9254898 ATTC-AATATTTCAAAGGTTTTC
1 ATTCAAAAATTT-TAGGGTTTTC
9254920 ATTCAAAAATTTTAGGG-TTTC
1 ATTCAAAAATTTTAGGGTTTTC
*
9254941 A-TCTAAAATTT
1 ATTCAAAAATTT
9254952 CAAGGATTCT
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
20 9 0.21
21 5 0.12
22 14 0.33
23 15 0.35
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (22 bp):
ATTCAAAAATTTTAGGGTTTTC
Found at i:9254967 original size:43 final size:44
Alignment explanation
Indices: 9254857--9254991 Score: 134
Period size: 43 Copynumber: 3.1 Consensus size: 44
9254847 TTCGCAACCA
* * *
9254857 AAAATTTCAAAGGCTCTTATTCAAAAATTTTAGTGTTTCACATTC
1 AAAATTTCAAAGGTTCTAATTCAAAAATTTTAGGGTTTCACA-TC
* * *
9254902 AATATTTCAAAGGTTTTCATTCAAAAATTTTAGGGTTT--CATC
1 AAAATTTCAAAGGTTCTAATTCAAAAATTTTAGGGTTTCACATC
* * *
9254944 TAAAATTTC-AAGGATTCTAATTCAAAAACTTTGGGGATTC-CATC
1 -AAAATTTCAAAGG-TTCTAATTCAAAAATTTTAGGGTTTCACATC
9254988 AAAA
1 AAAA
9254992 AATTTGTAAG
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
42 6 0.08
43 33 0.43
44 4 0.05
45 33 0.43
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (44 bp):
AAAATTTCAAAGGTTCTAATTCAAAAATTTTAGGGTTTCACATC
Found at i:9256521 original size:15 final size:15
Alignment explanation
Indices: 9256475--9256540 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 15
9256465 CCATTTTTTG
*
9256475 TTTTTCTTTGGTATTT
1 TTTTTC-TTAGTATTT
9256491 TTTTAT-TTAGTA---
1 TTTT-TCTTAGTATTT
9256503 TTTTTCTTAGTATTTTT
1 TTTTTCTTAGTA--TTT
9256520 TTTCTTCTTAGTATTT
1 TTT-TTCTTAGTATTT
9256536 TTTTT
1 TTTTT
9256541 TTCATGATTA
Statistics
Matches: 41, Mismatches: 1, Indels: 17
0.69 0.02 0.29
Matches are distributed among these distances:
11 1 0.02
12 10 0.24
15 7 0.17
16 10 0.24
17 4 0.10
18 9 0.22
ACGTcount: A:0.12, C:0.06, G:0.08, T:0.74
Consensus pattern (15 bp):
TTTTTCTTAGTATTT
Found at i:9256529 original size:18 final size:18
Alignment explanation
Indices: 9256506--9256540 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
9256496 TTTAGTATTT
9256506 TTCTTAGTATTTTTTTTC
1 TTCTTAGTATTTTTTTTC
9256524 TTCTTAGTATTTTTTTT
1 TTCTTAGTATTTTTTTT
9256541 TTCATGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.09, G:0.06, T:0.74
Consensus pattern (18 bp):
TTCTTAGTATTTTTTTTC
Found at i:9261273 original size:10 final size:10
Alignment explanation
Indices: 9261258--9261331 Score: 67
Period size: 10 Copynumber: 7.2 Consensus size: 10
9261248 AAAATGAAAG
9261258 AAAGAAAAAA
1 AAAGAAAAAA
9261268 AAAGAAAAAAA
1 AAAG-AAAAAA
9261279 AATAGAAAAAA
1 AA-AGAAAAAA
**
9261290 TGAGAAAAAA
1 AAAGAAAAAA
*
9261300 ATAGAAAAAA
1 AAAGAAAAAA
* **
9261310 AATGAAAATG
1 AAAGAAAAAA
*
9261320 AGAGAAAAAA
1 AAAGAAAAAA
9261330 AA
1 AA
9261332 TACTCAAATT
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
10 33 0.67
11 14 0.29
12 2 0.04
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.07
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:9261288 original size:22 final size:22
Alignment explanation
Indices: 9261260--9261317 Score: 84
Period size: 20 Copynumber: 2.7 Consensus size: 22
9261250 AATGAAAGAA
*
9261260 AGAAAAAAAAAGAAAAAAAAAT
1 AGAAAAAAAATGAAAAAAAAAT
*
9261282 AG--AAAAAATGAGAAAAAAAT
1 AGAAAAAAAATGAAAAAAAAAT
9261302 AGAAAAAAAATGAAAA
1 AGAAAAAAAATGAAAA
9261318 TGAGAGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 18 0.58
22 13 0.42
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (22 bp):
AGAAAAAAAATGAAAAAAAAAT
Found at i:9261298 original size:30 final size:29
Alignment explanation
Indices: 9261246--9261330 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 29
9261236 GTAATGGGTG
*
9261246 AAAAAATGAAAGAAAGAAAAAAAAAGA-AA
1 AAAAAATGAAA-AAAGAGAAAAAAAGAGAA
*
9261275 AAAAAATAGAAAAAATGAGAAAAAAATAGAA
1 AAAAAAT-GAAAAAA-GAGAAAAAAAGAGAA
*
9261306 AAAAAATGAAAATGAGAGAAAAAAA
1 AAAAAATGAAAA-AAGAGAAAAAAA
9261331 ATACTCAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
29 10 0.20
30 29 0.59
31 10 0.20
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (29 bp):
AAAAAATGAAAAAAGAGAAAAAAAGAGAA
Found at i:9261316 original size:20 final size:20
Alignment explanation
Indices: 9261246--9261332 Score: 72
Period size: 20 Copynumber: 4.3 Consensus size: 20
9261236 GTAATGGGTG
*
9261246 AAAAAATG-AAAGAA-AGAA
1 AAAAAATGAAAAAAATAGAA
*
9261264 AAAAAAAGAAAAAAAAATAGAA
1 AAAAAATG--AAAAAAATAGAA
*
9261286 AAAATGA-GAAAAAAATAGAA
1 AAAA-AATGAAAAAAATAGAA
** *
9261306 AAAAAATGAAAATGAGAGAA
1 AAAAAATGAAAAAAATAGAA
9261326 AAAAAAT
1 AAAAAAT
9261333 ACTCAAATTG
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
18 7 0.12
19 1 0.02
20 33 0.59
21 5 0.09
22 9 0.16
23 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (20 bp):
AAAAAATGAAAAAAATAGAA
Found at i:9262860 original size:46 final size:43
Alignment explanation
Indices: 9262742--9262861 Score: 116
Period size: 44 Copynumber: 2.7 Consensus size: 43
9262732 TTTGAACTCG
* * * *
9262742 AATGAGAAGCTTTGAACTTTTGGATGTAAATCTCTAAAATTCA
1 AATGAGAAGCTTTGAACTTTTGGATGTGAACCCCGAAAATTCA
* * **
9262785 AACGAAAAGCTTT-AAGCTTTTTGGATGTGAACCCCGAATTTGTCA
1 AATGAGAAGCTTTGAA-C-TTTTGGATGTGAACCCCGAAAAT-TCA
9262830 AATGTGAGAAGCTTTGAACTTTTGGATGTGAA
1 AA--TGAGAAGCTTTGAACTTTTGGATGTGAA
9262862 TCTCCAAATT
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
42 2 0.03
43 12 0.20
44 17 0.28
45 5 0.08
46 13 0.21
47 10 0.16
48 2 0.03
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.33
Consensus pattern (43 bp):
AATGAGAAGCTTTGAACTTTTGGATGTGAACCCCGAAAATTCA
Found at i:9263181 original size:42 final size:42
Alignment explanation
Indices: 9263122--9263435 Score: 416
Period size: 42 Copynumber: 7.4 Consensus size: 42
9263112 TCAAAGAGTA
* * *
9263122 ATTTATTTTTTCAAAAGTTTTGTTGCCTCTATTTAGAGGAGCT
1 ATTTA-TTTTTCCAAAGTTCTGTTGCCTCTATTTAGAGGAGCC
9263165 ATTTATTTTTCCAAAGTTCTGTTGCCTCTATTTAGAGGAGCC
1 ATTTATTTTTCCAAAGTTCTGTTGCCTCTATTTAGAGGAGCC
* *
9263207 ATTTATTTTTCCAAAAGTTTTGTTGCCTCTATTTAGAAGAGCC
1 ATTTATTTTTCC-AAAGTTCTGTTGCCTCTATTTAGAGGAGCC
** * * *
9263250 ATTTATTTTTTTAAAGTTCTATTACCTCTATTTAGATGAGCC
1 ATTTATTTTTCCAAAGTTCTGTTGCCTCTATTTAGAGGAGCC
* * *
9263292 ATTTATTTTTCCAAAAGTTCTATTGCCTCTATTTATAAGAGCC
1 ATTTATTTTTCC-AAAGTTCTGTTGCCTCTATTTAGAGGAGCC
* *
9263335 ATTTAATTTTT-CAATGTTCTGTTACCTCTATTTAGAGGAGCC
1 ATTT-ATTTTTCCAAAGTTCTGTTGCCTCTATTTAGAGGAGCC
* *
9263377 ATTTATTTTTCTAAAGTTCTGTTGCCTCTGTTTAGAGGAG-C
1 ATTTATTTTTCCAAAGTTCTGTTGCCTCTATTTAGAGGAGCC
9263418 ATTTATTTTTCTCAAAGT
1 ATTTATTTTTC-CAAAGT
9263436 CATTGAGCCT
Statistics
Matches: 240, Mismatches: 26, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
41 18 0.08
42 141 0.59
43 75 0.31
44 6 0.03
ACGTcount: A:0.24, C:0.16, G:0.14, T:0.46
Consensus pattern (42 bp):
ATTTATTTTTCCAAAGTTCTGTTGCCTCTATTTAGAGGAGCC
Found at i:9263266 original size:85 final size:85
Alignment explanation
Indices: 9263122--9263435 Score: 452
Period size: 85 Copynumber: 3.7 Consensus size: 85
9263112 TCAAAGAGTA
* * * * *
9263122 ATTTATTTTTTCAAAAGTTTTGTTGCCTCTATTTAGAGGAGCTATTTATTTTTCCAAAGTTCTGT
1 ATTTATTTTTCCAAAAGTTCTGTTGCCTCTATTTAGAAGAGCCATTTATTTTTTCAAAGTTCTGT
*
9263187 TGCCTCTATTTAGAGGAGCC
66 TACCTCTATTTAGAGGAGCC
* * *
9263207 ATTTATTTTTCCAAAAGTTTTGTTGCCTCTATTTAGAAGAGCCATTTATTTTTTTAAAGTTCTAT
1 ATTTATTTTTCCAAAAGTTCTGTTGCCTCTATTTAGAAGAGCCATTTATTTTTTCAAAGTTCTGT
*
9263272 TACCTCTATTTAGATGAGCC
66 TACCTCTATTTAGAGGAGCC
* * * *
9263292 ATTTATTTTTCCAAAAGTTCTATTGCCTCTATTTATAAGAGCCATTTAATTTTTCAATGTTCTGT
1 ATTTATTTTTCCAAAAGTTCTGTTGCCTCTATTTAGAAGAGCCATTTATTTTTTCAAAGTTCTGT
9263357 TACCTCTATTTAGAGGAGCC
66 TACCTCTATTTAGAGGAGCC
* * *
9263377 ATTTATTTTT-CTAAAGTTCTGTTGCCTCTGTTTAGAGGAG-CATTTATTTTTCTCAAAGT
1 ATTTATTTTTCCAAAAGTTCTGTTGCCTCTATTTAGAAGAGCCATTTATTTTT-TCAAAGT
9263436 CATTGAGCCT
Statistics
Matches: 205, Mismatches: 23, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
83 10 0.05
84 31 0.15
85 164 0.80
ACGTcount: A:0.24, C:0.16, G:0.14, T:0.46
Consensus pattern (85 bp):
ATTTATTTTTCCAAAAGTTCTGTTGCCTCTATTTAGAAGAGCCATTTATTTTTTCAAAGTTCTGT
TACCTCTATTTAGAGGAGCC
Done.