Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 55 of 131
Found at i:11282004 original size:19 final size:21
Alignment explanation
Indices: 11281968--11282008 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
11281958 ATAGATGGGA
11281968 TGAAGGGTTGGTTTTAGGGTT
1 TGAAGGGTTGGTTTTAGGGTT
11281989 TGAA-GGTTGG-TTTAGGGTT
1 TGAAGGGTTGGTTTTAGGGTT
11282008 T
1 T
11282009 AGGGTTTAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.50
20 6 0.30
21 4 0.20
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (21 bp):
TGAAGGGTTGGTTTTAGGGTT
Found at i:11282009 original size:7 final size:7
Alignment explanation
Indices: 11281997--11282055 Score: 59
Period size: 7 Copynumber: 8.7 Consensus size: 7
11281987 TTTGAAGGTT
11281997 GGTTTAG
1 GGTTTAG
11282004 GGTTTAG
1 GGTTTAG
11282011 GGTTTAG
1 GGTTTAG
11282018 GGTTTAG
1 GGTTTAG
* * *
11282025 AG-ATAA
1 GGTTTAG
11282031 GGTTT-G
1 GGTTTAG
11282037 GGTTTAG
1 GGTTTAG
* *
11282044 GGATTGG
1 GGTTTAG
11282051 GGTTT
1 GGTTT
11282056 CATGGGAAGT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
6 8 0.20
7 33 0.80
ACGTcount: A:0.17, C:0.00, G:0.42, T:0.41
Consensus pattern (7 bp):
GGTTTAG
Found at i:11282146 original size:14 final size:14
Alignment explanation
Indices: 11282127--11282160 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
11282117 TTTAGAGTTA
*
11282127 GGGTTTGGGATTTG
1 GGGTTTGGAATTTG
11282141 GGGTTTGGAATTTG
1 GGGTTTGGAATTTG
*
11282155 AGGTTT
1 GGGTTT
11282161 CATGGAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.44, T:0.44
Consensus pattern (14 bp):
GGGTTTGGAATTTG
Found at i:11284370 original size:14 final size:13
Alignment explanation
Indices: 11284353--11284405 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
11284343 TCCAACTTTC
11284353 CATCATTATTCATT
1 CATCATT-TTCATT
11284367 CATCATTTTCATT
1 CATCATTTTCATT
*
11284380 C-TTATTTTTCATT
1 CATCA-TTTTCATT
11284393 --TCA-TTTCATT
1 CATCATTTTCATT
11284403 CAT
1 CAT
11284406 TTTATTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
10 7 0.21
12 5 0.15
13 15 0.44
14 7 0.21
ACGTcount: A:0.23, C:0.21, G:0.00, T:0.57
Consensus pattern (13 bp):
CATCATTTTCATT
Found at i:11284630 original size:31 final size:31
Alignment explanation
Indices: 11284595--11284881 Score: 120
Period size: 31 Copynumber: 9.2 Consensus size: 31
11284585 AATAGACTTT
* *
11284595 GCTTAAATCTTCTTGGTACTAGCTAAACTAG
1 GCTTAAATCTTCTTGGTGCTAGCTAAACTGG
* * * * *
11284626 GCTTAATTCTCCTTGGTGCCAACTAGA-TGG
1 GCTTAAATCTTCTTGGTGCTAGCTAAACTGG
* **
11284656 GCTT-AAT-TTCCCTTGGTGCTAGTTGGACTGG
1 GCTTAAATCTT--CTTGGTGCTAGCTAAACTGG
* * * ** * * *
11284687 GCTTAAATCTTAATAGGTACTAATTAGACCGA
1 GCTTAAATCTT-CTTGGTGCTAGCTAAACTGG
* * * *
11284719 GCTTAAATCTTCTTGGTACCAACTAAACTAG
1 GCTTAAATCTTCTTGGTGCTAGCTAAACTGG
* * *
11284750 GTTTAAAT-TCTCTTTGGTGCTAGCTTAGATTGG
1 GCTTAAATCT-TC-TTGGTGCTAGC-TAAACTGG
* *
11284783 GCTTAAATCTT-TATAGGTACTAGCTATACTGG
1 GCTTAAATCTTCT-T-GGTGCTAGCTAAACTGG
* * * *
11284815 GCTT-AAT-TATCTTTGTGCCAACTAAACTAG
1 GCTTAAATCT-TCTTGGTGCTAGCTAAACTGG
* * * * *
11284845 ACTTAATTTTTTTTGGTGCTAGCTAAATTGG
1 GCTTAAATCTTCTTGGTGCTAGCTAAACTGG
11284876 GCTTAA
1 GCTTAA
11284882 TTCATATCTT
Statistics
Matches: 186, Mismatches: 55, Indels: 30
0.69 0.20 0.11
Matches are distributed among these distances:
28 1 0.01
29 2 0.01
30 34 0.18
31 77 0.41
32 48 0.26
33 23 0.12
34 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (31 bp):
GCTTAAATCTTCTTGGTGCTAGCTAAACTGG
Found at i:11284801 original size:96 final size:94
Alignment explanation
Indices: 11284668--11284881 Score: 245
Period size: 96 Copynumber: 2.3 Consensus size: 94
11284658 TTAATTTCCC
* * *
11284668 TTGGTGCTAG-TTGGACTGGGCTTAAATCTTAATAGGTACTAATTAGACCGAGCTTAAATCT-TC
1 TTGGTGCTAGCTTAGATTGGGCTTAAATCTTAATAGGTACTAACTAGACCGAGCTT-AAT-TATC
**
11284731 TTGGTACCAACTAAACTAGGTTTAAATTCTCT
64 TTGGTACCAACTAAACTAGACTT-AATTCTCT
* * * * *
11284763 TTGGTGCTAGCTTAGATTGGGCTTAAATCTTTATAGGTACTAGCTATACTGGGCTTAATTATCTT
1 TTGGTGCTAGCTTAGATTGGGCTTAAATCTTAATAGGTACTAACTAGACCGAGCTTAATTATCTT
* * * *
11284828 TGTGCCAACTAAACTAGACTTAATTTTTT
66 GGTACCAACTAAACTAGACTTAATTCTCT
*
11284857 TTGGTGCTAGC-TAAATTGGGCTTAA
1 TTGGTGCTAGCTTAGATTGGGCTTAA
11284882 TTCATATCTT
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
93 13 0.13
94 18 0.18
95 34 0.33
96 37 0.36
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (94 bp):
TTGGTGCTAGCTTAGATTGGGCTTAAATCTTAATAGGTACTAACTAGACCGAGCTTAATTATCTT
GGTACCAACTAAACTAGACTTAATTCTCT
Found at i:11286757 original size:20 final size:20
Alignment explanation
Indices: 11286734--11286780 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
11286724 TTTTCTTTTC
*
11286734 TTTTCTT-TATTTTTTGTTCT
1 TTTTCTTGT-TTTTTTGTTCA
* *
11286754 TTTTATTGTTTTTTTTTTCA
1 TTTTCTTGTTTTTTTGTTCA
11286774 TTTTCTT
1 TTTTCTT
11286781 CCCTTTTCCC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.06, C:0.09, G:0.04, T:0.81
Consensus pattern (20 bp):
TTTTCTTGTTTTTTTGTTCA
Found at i:11287336 original size:18 final size:18
Alignment explanation
Indices: 11287313--11287351 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
11287303 TTCTACTATT
*
11287313 TTTTTTTCTCTTATTTTC
1 TTTTTTCCTCTTATTTTC
* *
11287331 TTTTTTCCTTTTTTTTTC
1 TTTTTTCCTCTTATTTTC
11287349 TTT
1 TTT
11287352 GCATGCCACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTCCTCTTATTTTC
Found at i:11289520 original size:28 final size:28
Alignment explanation
Indices: 11289478--11289533 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
11289468 GCTTGAAAAA
* *
11289478 AAGACTAAAGTTAGACATGGGGGAATTT
1 AAGACTAAAGGTAGACATGAGGGAATTT
11289506 AAGACTAAAGGTAGACATGAGGGAATTT
1 AAGACTAAAGGTAGACATGAGGGAATTT
11289534 GAGTGTAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.29, T:0.23
Consensus pattern (28 bp):
AAGACTAAAGGTAGACATGAGGGAATTT
Found at i:11290624 original size:37 final size:36
Alignment explanation
Indices: 11290411--11290624 Score: 135
Period size: 37 Copynumber: 5.8 Consensus size: 36
11290401 GCTACCATTA
* * *
11290411 AAATGTGCATGAGATAGAATGCATGTATTTTCTATTT
1 AAATGTGCATAAGATAGAATGCATGTACTATCTA-TT
* * * * * **
11290448 AGATGCGCATAAAATGCGAGTGCACATACTATCTTATT
1 AAATGTGCATAAGAT-AGAATGCATGTACTATC-TATT
* * * * *
11290486 AAGATGTGCATAGGATAGAATGCTTGTTCCATTTATT
1 AA-ATGTGCATAAGATAGAATGCATGTACTATCTATT
* * *
11290523 AGAATTTGCATGAA-ATGGAATGCATGTACTATTTATT
1 A-AATGTGCAT-AAGATAGAATGCATGTACTATCTATT
* * *
11290560 AAAATGTGCATGAGATA-AGGTGTATGTACTATCTATT
1 -AAATGTGCATAAGATAGA-ATGCATGTACTATCTATT
*
11290597 ACAATGTGCATAAGATAGAGTGCATGTA
1 A-AATGTGCATAAGATAGAATGCATGTA
11290625 TTAAATGTAC
Statistics
Matches: 131, Mismatches: 36, Indels: 20
0.70 0.19 0.11
Matches are distributed among these distances:
36 3 0.02
37 89 0.68
38 27 0.21
39 12 0.09
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.35
Consensus pattern (36 bp):
AAATGTGCATAAGATAGAATGCATGTACTATCTATT
Found at i:11292986 original size:7 final size:7
Alignment explanation
Indices: 11292974--11293055 Score: 58
Period size: 7 Copynumber: 10.6 Consensus size: 7
11292964 CTTAAGTGTC
11292974 TAGGGTT
1 TAGGGTT
11292981 TAGGGTT
1 TAGGGTT
11292988 TA-GGTT
1 TAGGGTT
*
11292994 TAGTGTT
1 TAGGGTT
11293001 TAGGGTT
1 TAGGGTT
11293008 TCACAGGCGGTT
1 T---A-G-GGTT
*
11293020 TAAGGTT
1 TAGGGTT
11293027 TCATTGTGGTT
1 T-A--G-GGTT
11293038 TAGGGTT
1 TAGGGTT
11293045 TAGGGTT
1 TAGGGTT
11293052 TAGG
1 TAGG
11293056 TTTGGATTAG
Statistics
Matches: 61, Mismatches: 4, Indels: 20
0.72 0.05 0.24
Matches are distributed among these distances:
6 6 0.10
7 39 0.64
8 2 0.03
9 1 0.02
10 2 0.03
11 6 0.10
12 5 0.08
ACGTcount: A:0.16, C:0.05, G:0.37, T:0.43
Consensus pattern (7 bp):
TAGGGTT
Found at i:11295196 original size:20 final size:20
Alignment explanation
Indices: 11295151--11295188 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
11295141 TTTTATTTGT
*
11295151 TTTTGATCAATTTTGACTAA
1 TTTTGATCAAGTTTGACTAA
11295171 TTTTGATCAAGTTTGACT
1 TTTTGATCAAGTTTGACT
11295189 TTATTTGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (20 bp):
TTTTGATCAAGTTTGACTAA
Found at i:11298184 original size:22 final size:22
Alignment explanation
Indices: 11298158--11298258 Score: 84
Period size: 22 Copynumber: 4.6 Consensus size: 22
11298148 TAAAATGCTA
*
11298158 AAATTCAAAGATTTACAATTTG
1 AAATTCAAAGATTCACAATTTG
*
11298180 AAATTTC-AAGATTCATAATTT-
1 AAA-TTCAAAGATTCACAATTTG
*
11298201 AAACTTC-AAGTATTCACAACTTG
1 AAA-TTCAAAG-ATTCACAATTTG
* **
11298224 AAATTCAAATATTTGCAA-TTG
1 AAATTCAAAGATTCACAATTTG
*
11298245 AAATTTAAAGATTC
1 AAATTCAAAGATTC
11298259 TCATCTAAAA
Statistics
Matches: 64, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
21 23 0.36
22 33 0.52
23 8 0.12
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.37
Consensus pattern (22 bp):
AAATTCAAAGATTCACAATTTG
Found at i:11298335 original size:22 final size:22
Alignment explanation
Indices: 11298245--11298335 Score: 87
Period size: 22 Copynumber: 4.1 Consensus size: 22
11298235 TTTGCAATTG
*
11298245 AAATTTAAAGATTC-TCATCTAA
1 AAATTTAAAGATTCGT-ATTTAA
*
11298267 AAATTTAAAGATTTGTAATTTAA
1 AAATTTAAAGATTCGT-ATTTAA
* * *
11298290 AATTTTAGAGATTCATATTT-A
1 AAATTTAAAGATTCGTATTTAA
* *
11298311 AAATTCAAAAATTCGTATTTAA
1 AAATTTAAAGATTCGTATTTAA
11298333 AAA
1 AAA
11298336 AATTAAGAGA
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
21 16 0.29
22 21 0.38
23 18 0.33
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (22 bp):
AAATTTAAAGATTCGTATTTAA
Found at i:11298461 original size:21 final size:21
Alignment explanation
Indices: 11298433--11298577 Score: 85
Period size: 23 Copynumber: 6.7 Consensus size: 21
11298423 AAAATTTTAG
11298433 AGATTCACATCTAAAATTCAA
1 AGATTCACATCTAAAATTCAA
* * * *
11298454 ATATTCACATTTGAAAAATTTAG
1 AGATTCACATCT--AAAATTCAA
*
11298477 AGATTCACATCTGAAATTCAA
1 AGATTCACATCTAAAATTCAA
* * * *
11298498 AGATTTACATTTGAAACATTTAG
1 AGATTCACATCT-AAA-ATTCAA
* *
11298521 AGATTAACATCT-ACATTCAA
1 AGATTCACATCTAAAATTCAA
* ** * * *
11298541 AGGTTTGCATTTGAAAATTTAG
1 AGATTCACATCT-AAAATTCAA
11298563 AGATTCACATCTAAA
1 AGATTCACATCTAAA
11298578 GTTTAAAGGT
Statistics
Matches: 88, Mismatches: 30, Indels: 12
0.68 0.23 0.09
Matches are distributed among these distances:
20 12 0.14
21 30 0.34
22 15 0.17
23 31 0.35
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (21 bp):
AGATTCACATCTAAAATTCAA
Found at i:11298482 original size:23 final size:23
Alignment explanation
Indices: 11298417--11298530 Score: 101
Period size: 23 Copynumber: 5.1 Consensus size: 23
11298407 AAAGATTTCT
11298417 ATTTGAAAAATTTTAGAGATTCAC
1 ATTTGAAAAA-TTTAGAGATTCAC
* * * *
11298441 ATCT--AAAATTCAAATATTCAC
1 ATTTGAAAAATTTAGAGATTCAC
11298462 ATTTGAAAAATTTAGAGATTCAC
1 ATTTGAAAAATTTAGAGATTCAC
* * * *
11298485 ATCTG--AAATTCAAAGATTTAC
1 ATTTGAAAAATTTAGAGATTCAC
* *
11298506 ATTTGAAACATTTAGAGATTAAC
1 ATTTGAAAAATTTAGAGATTCAC
11298529 AT
1 AT
11298531 CTACATTCAA
Statistics
Matches: 69, Mismatches: 17, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
21 30 0.43
22 4 0.06
23 32 0.46
24 3 0.04
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.35
Consensus pattern (23 bp):
ATTTGAAAAATTTAGAGATTCAC
Found at i:11298553 original size:43 final size:43
Alignment explanation
Indices: 11298224--11298949 Score: 533
Period size: 45 Copynumber: 16.6 Consensus size: 43
11298214 TCACAACTTG
* * * *
11298224 AAATTCAAATATTTGCAATTG-AAA-TTTAAAGATTCTCATCT
1 AAATTCAAAGATTTGCATTTGAAAATTTTAGAGATTCACATCT
* * * *
11298265 AAAAATTTAAAGATTTGTAATTT-AAAATTTTAGAGATTCATATTT
1 --AAATTCAAAGATTTG-CATTTGAAAATTTTAGAGATTCACATCT
* * * * * *
11298310 AAAATTCAAAAATTCGTATTTAAAAAAATTAAGAGATTCACATCT
1 -AAATTCAAAGATTTGCATTT-GAAAATTTTAGAGATTCACATCT
* * * ** *
11298355 AAAGTTGC-AAGATTCGCATTCGAAAAATTTTATAGATTTTCATTT
1 AAA-TT-CAAAGATTTGCATTTG-AAAATTTTAGAGATTCACATCT
11298400 AAATTACAAAGATTT-CTATTTGAAAAATTTTAGAGATTCACATCT
1 AAATT-CAAAGATTTGC-ATTTG-AAAATTTTAGAGATTCACATCT
* ** *
11298445 AAAATTCAAATATTCACATTTGAAAAATTTAGAGATTCACATCT
1 -AAATTCAAAGATTTGCATTTGAAAATTTTAGAGATTCACATCT
* *
11298489 GAAATTCAAAGATTTACATTTGAAACA-TTTAGAGATTAACATCT
1 -AAATTCAAAGATTTGCATTTGAAA-ATTTTAGAGATTCACATCT
* *
11298533 ACATTCAAAGGTTTGCATTTGAAAA-TTTAGAGATTCACATCT
1 AAATTCAAAGATTTGCATTTGAAAATTTTAGAGATTCACATCT
* * * * *
11298575 AAAGTTTAAAGGTTTGTATTTGAAAAATTCTAGAGATTTACATCT
1 AAA-TTCAAAGATTTGCATTTG-AAAATTTTAGAGATTCACATCT
*
11298620 AAATTCAAA-ACTTTGCATTTGAAAATTTTAGAGATTCAAATC-
1 AAATTCAAAGA-TTTGCATTTGAAAATTTTAGAGATTCACATCT
* * * ** *
11298662 AAATTTAAAGGTTGGCATTTGCAAAATTTTAGAGATTCATTTAT
1 AAATTCAAAGATTTGCATTTG-AAAATTTTAGAGATTCACATCT
** * * *
11298706 AAAGTTCAAAGATTCACATTGGATAAATTTTAAAGATTTACATCT
1 AAA-TTCAAAGATTTGCATTTGA-AAATTTTAGAGATTCACATCT
* * *
11298751 AAAGTTAAAAGGTTCT-CATTTGAAAAATTTTAGAGAATCACATCTT
1 AAA-TTCAAAGATT-TGCATTTG-AAAATTTTAGAGATTCACATC-T
* * * **
11298797 AAATTCAAATATTTACGTTTGAAAATTTTAGAGATTTGCATCT
1 AAATTCAAAGATTTGCATTTGAAAATTTTAGAGATTCACATCT
** ** **
11298840 AAATTCAACA-ATTCACATTTGAAAAAACTTAGAGATTTGC-TCT
1 AAATTCAA-AGATTTGCATTTG-AAAATTTTAGAGATTCACATCT
* * * * *
11298883 AAAATTCAAATATTCGCATTCGAAAA-TTTAGAGATTTACATAT
1 -AAATTCAAAGATTTGCATTTGAAAATTTTAGAGATTCACATCT
*
11298926 AAATTCAAAGGTTTGCATTTGAAA
1 AAATTCAAAGATTTGCATTTGAAA
11298950 TTCAGTGATT
Statistics
Matches: 554, Mismatches: 98, Indels: 63
0.77 0.14 0.09
Matches are distributed among these distances:
42 67 0.12
43 118 0.21
44 160 0.29
45 197 0.36
46 12 0.02
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (43 bp):
AAATTCAAAGATTTGCATTTGAAAATTTTAGAGATTCACATCT
Found at i:11298734 original size:131 final size:128
Alignment explanation
Indices: 11298284--11298949 Score: 535
Period size: 130 Copynumber: 5.1 Consensus size: 128
11298274 AAGATTTGTA
* * * * ** * *
11298284 ATTT-AAAATTTTAGAGATTCATATTTAAAATTCAAAAATTCGTATTTAAAAAAATTAAGAGATT
1 ATTTGAAAATTTTAGAGATTCACATCTAAAGTTCAAAGATTCACATTT-GAAAAATTTAGAGATT
* * * * * ** * *
11298348 CACATCTAAAGTTGCAAGATTCGCATTCGAAAAATTTTATAGATTTTCATTTAAATTACAAAGAT
65 TACATCTAAA-TT-CAAAATT-TCATTTG-AAAATTTTAGAGATTAACATCTAAATT-CAAAGGT
*
11298413 T-TC
125 TGGC
* *
11298416 TATTTGAAAAATTTTAGAGATTCACATCTAAAATTCAAATATTCACATTTGAAAAATTTAGAGAT
1 -ATTTG-AAAATTTTAGAGATTCACATCTAAAGTTCAAAGATTCACATTTGAAAAATTTAGAGAT
* *
11298481 TCACATCTGAAATTCAAAGATTTACATTTGAAACA-TTTAGAGATTAACATCTACATTCAAAGGT
64 TTACATCT-AAATTCAAA-ATTT-CATTTGAAA-ATTTTAGAGATTAACATCTAAATTCAAAGGT
*
11298545 TTGC
125 TGGC
* * ***
11298549 ATTTGAAAA-TTTAGAGATTCACATCTAAAGTTTAAAGGTTTGTATTTGAAAAATTCTAGAGATT
1 ATTTGAAAATTTTAGAGATTCACATCTAAAGTTCAAAGATTCACATTTGAAAAATT-TAGAGATT
*
11298613 TACATCTAAATTCAAAACTTTGCATTTGAAAATTTTAGAGATTCAA-ATC-AAATTTAAAGGTTG
65 TACATCTAAATTCAAAA-TTT-CATTTGAAAATTTTAGAGATT-AACATCTAAATTCAAAGGTTG
11298676 GC
127 GC
** * * * *
11298678 ATTTGCAAAATTTTAGAGATTCATTTATAAAGTTCAAAGATTCACATTGGATAAATTTTAAAGAT
1 ATTTG-AAAATTTTAGAGATTCACATCTAAAGTTCAAAGATTCACATTTGA-AAAATTTAGAGAT
* * *
11298743 TTACATCTAAAGTT-AAAAGGTTCTCATTTGAAAAATTTTAGAGAATCACATCTTAAATTCAAAT
64 TTACATCTAAA-TTCAAAA--TT-TCATTTG-AAAATTTTAGAGATTAACATC-TAAATTCAAAG
* **
11298807 ATTTAC
123 GTTGGC
* ** *
11298813 GTTTGAAAATTTTAGAGATTTGCATCTAAA-TTCAACA-ATTCACATTTGAAAAAACTTAGAGAT
1 ATTTGAAAATTTTAGAGATTCACATCTAAAGTTCAA-AGATTCACATTTG-AAAAATTTAGAGAT
* * * * *
11298876 TTGC-TCTAAAATTCAAATATTCGCATTCGAAAA-TTTAGAGATTTACATATAAATTCAAAGGTT
64 TTACATCT-AAATTCAAA-ATT-TCATTTGAAAATTTTAGAGATTAACATCTAAATTCAAAGGTT
*
11298939 TGC
126 GGC
11298942 ATTTGAAA
1 ATTTGAAA
11298950 TTCAGTGATT
Statistics
Matches: 439, Mismatches: 68, Indels: 56
0.78 0.12 0.10
Matches are distributed among these distances:
129 41 0.09
130 90 0.21
131 76 0.17
132 41 0.09
133 80 0.18
134 55 0.13
135 56 0.13
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (128 bp):
ATTTGAAAATTTTAGAGATTCACATCTAAAGTTCAAAGATTCACATTTGAAAAATTTAGAGATTT
ACATCTAAATTCAAAATTTCATTTGAAAATTTTAGAGATTAACATCTAAATTCAAAGGTTGGC
Found at i:11301544 original size:27 final size:27
Alignment explanation
Indices: 11301478--11301544 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 27
11301468 AAATAAGTCT
* *
11301478 AAAATAAAAAAATTGATTATTTTAAGA
1 AAAATAAAAAAAATGATGATTTTAAGA
* **
11301505 AAAGTATTAAAAATG-TGATTTTAAGA
1 AAAATAAAAAAAATGATGATTTTAAGA
11301531 AAAATAAAATAAAA
1 AAAATAAAA-AAAA
11301545 AATAATATTT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
26 16 0.52
27 15 0.48
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATAAAAAAAATGATGATTTTAAGA
Found at i:11302248 original size:48 final size:48
Alignment explanation
Indices: 11302192--11302287 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
11302182 AATTTGTAAG
11302192 TGATAATTTTGAAAATTAGTTTCTTTTTATAAATAATGATTAATAGTC
1 TGATAATTTTGAAAATTAGTTTCTTTTTATAAATAATGATTAATAGTC
11302240 TGATAATTTTGAAAATTAGTTTCTTTTTATAAATAATGATTAATAGTC
1 TGATAATTTTGAAAATTAGTTTCTTTTTATAAATAATGATTAATAGTC
11302288 CTACATAAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.48
Consensus pattern (48 bp):
TGATAATTTTGAAAATTAGTTTCTTTTTATAAATAATGATTAATAGTC
Found at i:11304809 original size:14 final size:14
Alignment explanation
Indices: 11304790--11304819 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11304780 TTCTTTCTAC
11304790 AAAAAAAAAAAGAA
1 AAAAAAAAAAAGAA
*
11304804 AAAAAAAGAAAGAA
1 AAAAAAAAAAAGAA
11304818 AA
1 AA
11304820 TTTTGATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAGAA
Found at i:11307275 original size:16 final size:16
Alignment explanation
Indices: 11307241--11307277 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
11307231 ATAAATTTGT
*
11307241 AAAAATAAAAAAAATA
1 AAAAATAAAAAAAAGA
*
11307257 AAAAATAAAAAAAGGA
1 AAAAATAAAAAAAAGA
11307273 AAAAA
1 AAAAA
11307278 AAAGGGATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.86, C:0.00, G:0.05, T:0.08
Consensus pattern (16 bp):
AAAAATAAAAAAAAGA
Found at i:11307850 original size:17 final size:16
Alignment explanation
Indices: 11307809--11307878 Score: 63
Period size: 16 Copynumber: 4.4 Consensus size: 16
11307799 CAAAAACAAG
*
11307809 AAAAAAAAAAGAGATA
1 AAAAAAAAAAGAGAGA
*
11307825 AGGAAAAAAAAGAGAGA
1 A-AAAAAAAAAGAGAGA
* *
11307842 AAAACAAAAAGAAAGA
1 AAAAAAAAAAGAGAGA
* *
11307858 AAAGAGAAAAGA-A-A
1 AAAAAAAAAAGAGAGA
11307872 AAAAAAA
1 AAAAAAA
11307879 CAAAATTTTT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
14 6 0.14
15 1 0.02
16 22 0.51
17 14 0.33
ACGTcount: A:0.80, C:0.01, G:0.17, T:0.01
Consensus pattern (16 bp):
AAAAAAAAAAGAGAGA
Found at i:11307875 original size:25 final size:25
Alignment explanation
Indices: 11307827--11307877 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
11307817 AAGAGATAAG
*
11307827 GAAAAAAAAGAGAGAAAAACAAAAA
1 GAAAAAAAAGAGAGAAAAAAAAAAA
* *
11307852 GAAAGAAAAGAGAAAAGAAAAAAAAA
1 GAAAAAAAAGAGAGAA-AAAAAAAAA
11307878 ACAAAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (25 bp):
GAAAAAAAAGAGAGAAAAAAAAAAA
Found at i:11307883 original size:16 final size:16
Alignment explanation
Indices: 11307841--11307883 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
11307831 AAAAAGAGAG
*
11307841 AAAAACAAAAAGAAAGA
1 AAAAAC-AAAAGAAAAA
* *
11307858 AAAGAGAAAAGAAAAA
1 AAAAACAAAAGAAAAA
11307874 AAAAACAAAA
1 AAAAACAAAA
11307884 TTTTTTATTG
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.84, C:0.05, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAACAAAAGAAAAA
Found at i:11307883 original size:23 final size:22
Alignment explanation
Indices: 11307828--11307883 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
11307818 AGAGATAAGG
*
11307828 AAAAAAAAGAGAGAAAAACAAA
1 AAAAAAAAAAGAGAAAAACAAA
*
11307850 AAGAAAGAAAAGAGAAAAGA-AAA
1 AA-AAAAAAAAGAGAAAA-ACAAA
11307873 AAAAAACAAAA
1 AAAAAA-AAAA
11307884 TTTTTTATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 5 0.18
23 22 0.79
24 1 0.04
ACGTcount: A:0.82, C:0.04, G:0.14, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAGAGAAAAACAAA
Found at i:11308384 original size:18 final size:19
Alignment explanation
Indices: 11308363--11308420 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 19
11308353 AATGAATAAG
**
11308363 AAAAATAAGAAATGGGA-A
1 AAAAATAAGAAAAAGGAGA
*
11308381 AAAAATAAAAAAAAGGAGA
1 AAAAATAAGAAAAAGGAGA
11308400 AAAAA-AAGAAAAA--AGA
1 AAAAATAAGAAAAAGGAGA
11308416 AAAAA
1 AAAAA
11308421 GAACAATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
16 8 0.23
18 21 0.60
19 6 0.17
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (19 bp):
AAAAATAAGAAAAAGGAGA
Found at i:11308431 original size:18 final size:16
Alignment explanation
Indices: 11308397--11308436 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
11308387 AAAAAAAAGG
*
11308397 AGAAAAAAAAGAAAAA
1 AGAAAAAAAACAAAAA
11308413 AGAAAAAAGAACAATAAA
1 AGAAAAAA-AACAA-AAA
11308431 AGAAAA
1 AGAAAA
11308437 GAATGAAACG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 4 0.19
18 9 0.43
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (16 bp):
AGAAAAAAAACAAAAA
Found at i:11309596 original size:20 final size:20
Alignment explanation
Indices: 11309552--11309596 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
11309542 TTTTTTATTG
* *
11309552 AAAAATTTTTTTTTTCAAAA
1 AAAAATTTTTCTTTACAAAA
* *
11309572 TAAAATTTTTCTTTAGAAAA
1 AAAAATTTTTCTTTACAAAA
11309592 AAAAA
1 AAAAA
11309597 AAGAAAAAAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (20 bp):
AAAAATTTTTCTTTACAAAA
Found at i:11309893 original size:5 final size:5
Alignment explanation
Indices: 11309880--11309910 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
11309870 AAAGAGAAAT
*
11309880 ATGGG ATGGA ATGGA ATGGA ATGGA ATGGA A
1 ATGGA ATGGA ATGGA ATGGA ATGGA ATGGA A
11309911 AGAAAAATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.39, C:0.00, G:0.42, T:0.19
Consensus pattern (5 bp):
ATGGA
Found at i:11311279 original size:46 final size:46
Alignment explanation
Indices: 11311220--11311340 Score: 197
Period size: 46 Copynumber: 2.6 Consensus size: 46
11311210 AGCTTTTGTT
*
11311220 TAAAGGAGTTTTTAAATTTATTTTCAAAAGTTGTAAAGCCTTTACC
1 TAAAGGAGCTTTTAAATTTATTTTCAAAAGTTGTAAAGCCTTTACC
* * *
11311266 TAAAGTAGCTTTTAAATTTATTTTCTAAAGTTGTTAAGCCTTTACC
1 TAAAGGAGCTTTTAAATTTATTTTCAAAAGTTGTAAAGCCTTTACC
*
11311312 TAAAGGAACTTTTAAATTTATTTTCAAAA
1 TAAAGGAGCTTTTAAATTTATTTTCAAAA
11311341 ACCGTTGCAT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.43
Consensus pattern (46 bp):
TAAAGGAGCTTTTAAATTTATTTTCAAAAGTTGTAAAGCCTTTACC
Found at i:11311355 original size:46 final size:45
Alignment explanation
Indices: 11311220--11311387 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 45
11311210 AGCTTTTGTT
** *** *
11311220 TAAAGGAGTTTTTAAATTTATTTTCAAAAGTTGTAAAGCCTTTACC
1 TAAAGGAACTTTTAAATTTATTTTCAAAAACCGT-TAGCCTTTACC
* * * ***
11311266 TAAAGTAGCTTTTAAATTTATTTTCTAAAGTTGTTAAGCCTTTACC
1 TAAAGGAACTTTTAAATTTATTTTCAAAAACCGTT-AGCCTTTACC
*
11311312 TAAAGGAACTTTTAAATTTATTTTCAAAAACCGTT-GCATCTTTACT
1 TAAAGGAACTTTTAAATTTATTTTCAAAAACCGTTAGC--CTTTACC
* * *
11311358 TAGAGGAACTTTTAAAATTATTTTAAAAAA
1 TAAAGGAACTTTTAAATTTATTTTCAAAAA
11311388 TTGTCAAGTT
Statistics
Matches: 105, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
44 2 0.02
46 103 0.98
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (45 bp):
TAAAGGAACTTTTAAATTTATTTTCAAAAACCGTTAGCCTTTACC
Found at i:11312303 original size:22 final size:21
Alignment explanation
Indices: 11312251--11312331 Score: 74
Period size: 22 Copynumber: 3.8 Consensus size: 21
11312241 TATTTGCAAT
* *
11312251 TTGAAATT-TAAGATTCATAA
1 TTGAAATTCAAAGATTCAAAA
*
11312271 TTTAAACTTCAAAGATTCAAAA
1 TTGAAA-TTCAAAGATTCAAAA
* * *
11312293 CTTGAAATTCAAATACTCACAA
1 -TTGAAATTCAAAGATTCAAAA
*
11312315 TTGAAATTTAAAGATTC
1 TTGAAATTCAAAGATTC
11312332 CCATCCAAAA
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
20 5 0.10
21 16 0.33
22 22 0.46
23 5 0.10
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.35
Consensus pattern (21 bp):
TTGAAATTCAAAGATTCAAAA
Found at i:11312364 original size:22 final size:21
Alignment explanation
Indices: 11312339--11312392 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
11312329 TTCCCATCCA
*
11312339 AAAATTCAATGATTCATAAT-T
1 AAAATTCAAAGATTCAT-ATCT
*
11312360 GAAAATTTTAAAGATTCATATCT
1 -AAAA-TTCAAAGATTCATATCT
11312383 AAAATTCAAA
1 AAAATTCAAA
11312393 ATTTTGCATT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
21 5 0.19
22 10 0.37
23 12 0.44
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.35
Consensus pattern (21 bp):
AAAATTCAAAGATTCATATCT
Found at i:11312785 original size:44 final size:44
Alignment explanation
Indices: 11312361--11312972 Score: 400
Period size: 44 Copynumber: 14.0 Consensus size: 44
11312351 TTCATAATTG
* **
11312361 AAAATTTTAAAGATTCATATCTAAAATTCAAAATTTTGCATTTGA
1 AAAATTTTAAAGATTCACATCT-AAATTCAAAGGTTTGCATTTGA
* * *
11312406 AATAA--TTAAGAGATTCGCATATAAAGTTGC-AAGATTTGCATTTGA
1 AA-AATTTTAA-AGATTCACATCTAAA-TT-CAAAGGTTTGCATTTGA
* * ** *
11312451 AAATTTTTATAGATTCTTATCTAAATTTCAAAGATTT-CTATTTGA
1 AAAATTTTAAAGATTCACATCTAAA-TTCAAAGGTTTGC-ATTTGA
* * **
11312496 AAAATTTTAGAGATTCACATCTAAAATTCAAAGATTTAAATTT--
1 AAAATTTTAAAGATTCACATCT-AAATTCAAAGGTTTGCATTTGA
* * *** * ** *
11312539 CAAATTTTCAAAAATTTTTATATGAAATTCAAATATTTGTGA-TTG-
1 AAAATTTT-AAAGATTCACATCT-AAATTCAAAGGTTTG-CATTTGA
* * * * *
11312584 AAAA-TTTAGAGATTCATATCTAAGTTCAAAGGTTTACATTT-T
1 AAAATTTTAAAGATTCACATCTAAATTCAAAGGTTTGCATTTGA
* * * *
11312626 AAAA-TTTAGAGATTCATATCTAAATTCAAAAGTTCT-TATTT-A
1 AAAATTTTAAAGATTCACATCTAAATTCAAAGGTT-TGCATTTGA
* * ** **
11312668 AAAGA-TTTAGAGATTCACATCTAAATTCCAAGGTTCACA-TCCA
1 AAA-ATTTTAAAGATTCACATCTAAATTCAAAGGTTTGCATTTGA
*
11312711 AAAATTTTTTAA-ATTCACATCTAAAGTTCAAAGGTTTGCATTTGA
1 AAAA-TTTTAAAGATTCACATCTAAA-TTCAAAGGTTTGCATTTGA
** * *
11312756 AAAATTTTAAAGATTTGCATCTAAATTCAAAAGTTCGCATTTG-
1 AAAATTTTAAAGATTCACATCTAAATTCAAAGGTTTGCATTTGA
* * * *
11312799 AAAATTTTAGAGATTCAAATATCAAATTCAAAGGTTGGCATTTGA
1 AAAATTTTAAAGATTCACATCT-AAATTCAAAGGTTTGCATTTGA
* ** *
11312844 AAAATTTTAGAGATTCACATCTAAATTCAAATATTTACATTTGA
1 AAAATTTTAAAGATTCACATCTAAATTCAAAGGTTTGCATTTGA
* * **
11312888 AAAAATTTAAAGAATCAC-TCTAAAATTCAAATATTTGCATTTG-
1 AAAATTTTAAAGATTCACATCT-AAATTCAAAGGTTTGCATTTGA
** *
11312931 -AAATTTTAATTATTTACATCTAAATTCAAAGGTTTGCATTTG
1 AAAATTTTAAAGATTCACATCTAAATTCAAAGGTTTGCATTTG
11312973 CAATTCAATT
Statistics
Matches: 455, Mismatches: 84, Indels: 59
0.76 0.14 0.10
Matches are distributed among these distances:
41 1 0.00
42 85 0.19
43 86 0.19
44 145 0.32
45 129 0.28
46 9 0.02
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (44 bp):
AAAATTTTAAAGATTCACATCTAAATTCAAAGGTTTGCATTTGA
Found at i:11312914 original size:88 final size:87
Alignment explanation
Indices: 11312340--11312972 Score: 442
Period size: 88 Copynumber: 7.2 Consensus size: 87
11312330 TCCCATCCAA
* * * * *
11312340 AAATTCAATGATTCATAATTGAAAATTTTAAAGATTCATATCTAAAATTCAAAATTTTGCATTTG
1 AAATTCAAAGATTTACATTTGAAAATTTTAAAGATTCA-ATCTAAAATTCAAAAGTTTGCATTTG
* * *
11312405 AAATAA-TTAAGAGATTCGCATAT
65 AAA-AATTTTAGAGATTCACATCT
* * * *
11312428 AAAGTTGC-AAGATTTGCATTTGAAAATTTTTATAGATTCTTATCTAAATTTC-AAAGATTT-CT
1 AAA-TT-CAAAGATTTACATTTGAAAA-TTTTAAAGATTC-AATCTAAAATTCAAAAG-TTTGC-
11312490 ATTTGAAAAATTTTAGAGATTCACATCT
60 ATTTGAAAAATTTTAGAGATTCACATCT
* * * ** * * *
11312518 AAAATTCAAAGATTTAAATTT-CAAATTTTCAAAAATTTTTATATGAAATTCAAATA-TTTGTGA
1 -AAATTCAAAGATTTACATTTGAAAATTTT-AAAGA-TTCAATCTAAAATTCAAA-AGTTTG-CA
*
11312581 -TTG-AAAA-TTTAGAGATTCATATCT
61 TTTGAAAAATTTTAGAGATTCACATCT
* * * * *
11312605 AAGTTCAAAGGTTTACATTTTAAAA-TTTAGAGATTCATATCT-AAATTCAAAAGTTCT-TATTT
1 AAATTCAAAGATTTACATTTGAAAATTTTAAAGATTCA-ATCTAAAATTCAAAAGTT-TGCATTT
11312667 -AAAAGA-TTTAGAGATTCACATCT
64 GAAAA-ATTTTAGAGATTCACATCT
* * * *** * * *
11312690 AAATTCCAAGGTTCACATCCAAAAATTTTTTAA-ATTCACATCTAAAGTTCAAAGGTTTGCATTT
1 AAATTCAAAGATTTACATTTGAAAA-TTTTAAAGATTCA-ATCTAAAATTCAAAAGTTTGCATTT
* **
11312754 GAAAAATTTTAAAGATTTGCATCT
64 GAAAAATTTTAGAGATTCACATCT
** * * * * *
11312778 AAATTCAAA-AGTTCGCATTTGAAAATTTTAGAGATTCAAATATCAAATTCAAAGGTTGGCATTT
1 AAATTCAAAGA-TTTACATTTGAAAATTTTAAAGATTC-AATCTAAAATTCAAAAGTTTGCATTT
11312842 GAAAAATTTTAGAGATTCACATCT
64 GAAAAATTTTAGAGATTCACATCT
* * * *
11312866 AAATTCAAATATTTACATTTGAAAAAATTTAAAGAATCACTCTAAAATTCAAATA-TTTGCATTT
1 AAATTCAAAGATTTACATTTG-AAAATTTTAAAGATTCAATCTAAAATTCAAA-AGTTTGCATTT
* *
11312930 G--AAATTTTA-ATTATTTACATCT
64 GAAAAATTTTAGA-GATTCACATCT
* *
11312952 AAATTCAAAGGTTTGCATTTG
1 AAATTCAAAGATTTACATTTG
11312973 CAATTCAATT
Statistics
Matches: 431, Mismatches: 79, Indels: 72
0.74 0.14 0.12
Matches are distributed among these distances:
83 2 0.00
84 18 0.04
85 44 0.10
86 65 0.15
87 44 0.10
88 131 0.30
89 58 0.13
90 65 0.15
91 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (87 bp):
AAATTCAAAGATTTACATTTGAAAATTTTAAAGATTCAATCTAAAATTCAAAAGTTTGCATTTGA
AAAATTTTAGAGATTCACATCT
Found at i:11318955 original size:16 final size:16
Alignment explanation
Indices: 11318921--11318955 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
11318911 ATACAAGCTC
**
11318921 ATACCAATTGTTATGG
1 ATACCAATTGTTAAAG
11318937 ATACCAATTGTTAAAG
1 ATACCAATTGTTAAAG
11318953 ATA
1 ATA
11318956 TGTTATGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.34
Consensus pattern (16 bp):
ATACCAATTGTTAAAG
Found at i:11320416 original size:22 final size:22
Alignment explanation
Indices: 11320391--11320446 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
11320381 TTTTTCCTCA
*
11320391 TTCTTCATCATTTTTTTTCTTT
1 TTCTTCATCATTTTTTCTCTTT
**
11320413 TTCTTTTTCATTTTTTCTCTTT
1 TTCTTCATCATTTTTTCTCTTT
*
11320435 TTCATCATCATT
1 TTCTTCATCATT
11320447 CTTTATGTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.11, C:0.20, G:0.00, T:0.70
Consensus pattern (22 bp):
TTCTTCATCATTTTTTCTCTTT
Found at i:11320433 original size:16 final size:15
Alignment explanation
Indices: 11320410--11320439 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
11320400 ATTTTTTTTC
11320410 TTTTTCTTTTTCATT
1 TTTTTCTTTTTCATT
11320425 TTTTCTCTTTTTCAT
1 TTTT-TCTTTTTCAT
11320440 CATCATTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTCTTTTTCATT
Found at i:11340128 original size:25 final size:24
Alignment explanation
Indices: 11340070--11340128 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
11340060 TTCATCCTAT
11340070 ATGCATGAATGTACAAATAAATGC
1 ATGCATGAATGTACAAATAAATGC
* *
11340094 ATGCATTGAATGTTAGCAATTTAATG-
1 ATGCA-TGAATG-TA-CAAATAAATGC
11340120 ATGCATGAA
1 ATGCATGAA
11340129 AGCTTTGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 5 0.17
25 10 0.33
26 7 0.23
27 8 0.27
ACGTcount: A:0.41, C:0.10, G:0.19, T:0.31
Consensus pattern (24 bp):
ATGCATGAATGTACAAATAAATGC
Found at i:11341856 original size:21 final size:20
Alignment explanation
Indices: 11341839--11341878 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
11341829 ATAAACAAGT
*
11341839 AAAATATATATAATAACAAAG
1 AAAATAAATA-AATAACAAAG
11341860 AAAATAAATAAATAA-AAAG
1 AAAATAAATAAATAACAAAG
11341879 CAATCAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 5 0.28
21 9 0.50
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (20 bp):
AAAATAAATAAATAACAAAG
Found at i:11343599 original size:73 final size:71
Alignment explanation
Indices: 11343494--11343633 Score: 210
Period size: 73 Copynumber: 1.9 Consensus size: 71
11343484 TTGTCACGTT
*
11343494 TTTTTTTTTTTTGAAAAATCTCTGTCTCACTCTCA-CAACTCTCCATCTCTTCGATCTCTCTCAC
1 TTTTTTTTTTTTGAAAAATCTCTCTCTCACTCTCATC-ACTCTCCATCTCTTCGATCTCTCTCAC
11343558 TCTTCAC
65 TCTTCAC
** *
11343565 TTTTTTTTTTTTGAAATCTCTCTCACTCTCACTCTGATCACTCTCCATCTCTTCGATCTCTCTCA
1 TTTTTTTTTTTTGAAAAATCTCT--CTCTCACTCTCATCACTCTCCATCTCTTCGATCTCTCTCA
11343630 CTCT
64 CTCT
11343634 CTGCACTGTC
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
71 21 0.34
73 40 0.65
74 1 0.02
ACGTcount: A:0.16, C:0.33, G:0.04, T:0.46
Consensus pattern (71 bp):
TTTTTTTTTTTTGAAAAATCTCTCTCTCACTCTCATCACTCTCCATCTCTTCGATCTCTCTCACT
CTTCAC
Found at i:11343607 original size:15 final size:16
Alignment explanation
Indices: 11343587--11343634 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 16
11343577 GAAATCTCTC
11343587 TCACTCTCACTCT-GA
1 TCACTCTCACTCTCGA
11343602 TCACTCTCCATCTCTTCGA
1 TCACTCT-CA-CTC-TCGA
*
11343621 TCTCTCTCACTCTC
1 TCACTCTCACTCTC
11343635 TGCACTGTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 7 0.25
16 4 0.14
17 6 0.21
18 3 0.11
19 8 0.29
ACGTcount: A:0.15, C:0.44, G:0.04, T:0.38
Consensus pattern (16 bp):
TCACTCTCACTCTCGA
Found at i:11343678 original size:12 final size:12
Alignment explanation
Indices: 11343661--11343691 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
11343651 TCTCTTCGAT
11343661 TGCTACAAACTC
1 TGCTACAAACTC
*
11343673 TGCTACAATCTC
1 TGCTACAAACTC
11343685 TGCTACA
1 TGCTACA
11343692 GACTACCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.29
Consensus pattern (12 bp):
TGCTACAAACTC
Found at i:11350130 original size:13 final size:13
Alignment explanation
Indices: 11350114--11350168 Score: 51
Period size: 12 Copynumber: 4.4 Consensus size: 13
11350104 TTTGAAAAAA
11350114 AATAATAAATTTT
1 AATAATAAATTTT
*
11350127 AAT-ATATATTTT
1 AATAATAAATTTT
** * *
11350139 TGTAATCATTTTT
1 AATAATAAATTTT
11350152 AATAA-AAATTTT
1 AATAATAAATTTT
11350164 AATAA
1 AATAA
11350169 AATTTTTATT
Statistics
Matches: 31, Mismatches: 10, Indels: 3
0.70 0.23 0.07
Matches are distributed among these distances:
12 19 0.61
13 12 0.39
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (13 bp):
AATAATAAATTTT
Found at i:11351147 original size:44 final size:45
Alignment explanation
Indices: 11351099--11351197 Score: 103
Period size: 44 Copynumber: 2.2 Consensus size: 45
11351089 TAATATAATA
* * * * * *
11351099 ATTTTATATATTT-ATATAATATTAATGATATATTGTAATGTTAG
1 ATTTTATATATTTGATATAAAATCAATCATACATTATAATGCTAG
* * *
11351143 ATTTT-TGTTTTTGTTATAAAATCAATCATACATTATAATGCTAG
1 ATTTTATATATTTGATATAAAATCAATCATACATTATAATGCTAG
11351187 ATTTTATATAT
1 ATTTTATATAT
11351198 AGAGATTGTG
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
43 5 0.12
44 34 0.81
45 3 0.07
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.52
Consensus pattern (45 bp):
ATTTTATATATTTGATATAAAATCAATCATACATTATAATGCTAG
Found at i:11352862 original size:16 final size:15
Alignment explanation
Indices: 11352835--11352868 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
11352825 TAAATTGGAA
11352835 TAAAAGAATTTTTTT
1 TAAAAGAATTTTTTT
*
11352850 TAAAAGAA-ATTTTT
1 TAAAAGAATTTTTTT
11352864 TAAAA
1 TAAAA
11352869 AAATATTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (15 bp):
TAAAAGAATTTTTTT
Found at i:11352872 original size:13 final size:14
Alignment explanation
Indices: 11352835--11352872 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
11352825 TAAATTGGAA
*
11352835 TAAAAGAATTTTTTT
1 TAAAAGAA-ATTTTT
11352850 TAAAAGAAATTTTT
1 TAAAAGAAATTTTT
11352864 TAAAA-AAAT
1 TAAAAGAAAT
11352873 ATTAACTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 4 0.18
14 10 0.45
15 8 0.36
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (14 bp):
TAAAAGAAATTTTT
Found at i:11358502 original size:16 final size:16
Alignment explanation
Indices: 11358481--11358512 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
11358471 CACCTATAGC
11358481 CAATTTAATTTTGAGT
1 CAATTTAATTTTGAGT
11358497 CAATTTAATTTTGAGT
1 CAATTTAATTTTGAGT
11358513 TGGATGCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (16 bp):
CAATTTAATTTTGAGT
Found at i:11362810 original size:16 final size:17
Alignment explanation
Indices: 11362782--11362813 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
11362772 GGCTAGAAAC
11362782 ACTCACAAACCCAACAA
1 ACTCACAAACCCAACAA
11362799 ACTCAC-AACCCAACA
1 ACTCACAAACCCAACA
11362814 CCGGTGGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.50, C:0.44, G:0.00, T:0.06
Consensus pattern (17 bp):
ACTCACAAACCCAACAA
Found at i:11373178 original size:108 final size:108
Alignment explanation
Indices: 11373009--11373227 Score: 384
Period size: 108 Copynumber: 2.0 Consensus size: 108
11372999 TACTTAAGGA
* *
11373009 GATAGTCCAAAATAAAACACAATTATAAAATATGATCCATGTAACTGAACCATGTAGAGGAAAAG
1 GATAGTCCAAAATAAAACACAACTACAAAATATGATCCATGTAACTGAACCATGTAGAGGAAAAG
* * *
11373074 GTTTGGTCTGTTCTTTTACTTTGTTATTGATTTCTAGTCTTTG
66 GCTTGGTCTGTTCTTTTACTTTGTTATTGATTTCCACTCTTTG
*
11373117 GATAGTCCAAAATAAAACACAACTACAAAATATGATCCTTGTAACTGAACCATGTAGAGGAAAAG
1 GATAGTCCAAAATAAAACACAACTACAAAATATGATCCATGTAACTGAACCATGTAGAGGAAAAG
11373182 GCTTGGTCTGTTCTTTTACTTTGTTATTGATTTCCACTCTTTG
66 GCTTGGTCTGTTCTTTTACTTTGTTATTGATTTCCACTCTTTG
11373225 GAT
1 GAT
11373228 TACAATTTTA
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 105 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (108 bp):
GATAGTCCAAAATAAAACACAACTACAAAATATGATCCATGTAACTGAACCATGTAGAGGAAAAG
GCTTGGTCTGTTCTTTTACTTTGTTATTGATTTCCACTCTTTG
Found at i:11378257 original size:83 final size:83
Alignment explanation
Indices: 11378118--11378276 Score: 300
Period size: 83 Copynumber: 1.9 Consensus size: 83
11378108 AGTGTCTGAC
11378118 CATCATAGGTGAAAACAATGCACTACTAAAAGAAAAAGATTTTAAAACAACAGTACTTACCTCAT
1 CATCATAGGTGAAAACAATGCACTACTAAAAGAAAAAGATTTTAAAACAACAGTACTTACCTCAT
11378183 ATGCAACACTTTTCCATG
66 ATGCAACACTTTTCCATG
*
11378201 CATCATAGGTGAAAACAATGCACTACTAAAAGGAAAAGATTTTAAAACAACAGTACTTACCTCAT
1 CATCATAGGTGAAAACAATGCACTACTAAAAGAAAAAGATTTTAAAACAACAGTACTTACCTCAT
*
11378266 ATGCAGCACTT
66 ATGCAACACTT
11378277 ATCTCTTTAA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 74 1.00
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (83 bp):
CATCATAGGTGAAAACAATGCACTACTAAAAGAAAAAGATTTTAAAACAACAGTACTTACCTCAT
ATGCAACACTTTTCCATG
Found at i:11378490 original size:2 final size:2
Alignment explanation
Indices: 11378483--11378514 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
11378473 ATCCATACCC
*
11378483 CT CT CT CT CT CT CT CT CT CT CT CT CT GT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
11378515 TTGCGCCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (2 bp):
CT
Found at i:11386930 original size:22 final size:22
Alignment explanation
Indices: 11386905--11386948 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
11386895 TTTTTTGTCC
11386905 TTAATTCT-AAGGATACAAATAT
1 TTAATTCTGAA-GATACAAATAT
*
11386927 TTAATTCTGAATATACAAATAT
1 TTAATTCTGAAGATACAAATAT
11386949 AAATATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (22 bp):
TTAATTCTGAAGATACAAATAT
Found at i:11392049 original size:49 final size:49
Alignment explanation
Indices: 11391992--11392085 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
11391982 ATGCATTTTT
11391992 CATGCATCAATATTTACATTTCTACCAATGACATTTTTATTATTTGTCA
1 CATGCATCAATATTTACATTTCTACCAATGACATTTTTATTATTTGTCA
* * * *
11392041 CATGCATCAATATTTATATTTCTACGAATGGCATTTTTGTTATTT
1 CATGCATCAATATTTACATTTCTACCAATGACATTTTTATTATTT
11392086 ATTTTTGTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47
Consensus pattern (49 bp):
CATGCATCAATATTTACATTTCTACCAATGACATTTTTATTATTTGTCA
Found at i:11392169 original size:18 final size:18
Alignment explanation
Indices: 11392106--11392215 Score: 102
Period size: 18 Copynumber: 6.1 Consensus size: 18
11392096 TATGCATTTT
*
11392106 CCATGAAACCTCAAACCA
1 CCATGAAACCTTAAACCA
*
11392124 CCCATAAAATCC-TAAACC-
1 -CCATGAAA-CCTTAAACCA
11392142 CTCA--AAACCTTAAACCA
1 C-CATGAAACCTTAAACCA
*
11392159 CCATGAAACCTTAAACTA
1 CCATGAAACCTTAAACCA
**
11392177 CCATGAAACCCCAAACCA
1 CCATGAAACCTTAAACCA
*
11392195 CCCATGAATCCTTAAACCA
1 -CCATGAAACCTTAAACCA
11392214 CC
1 CC
11392216 CACTAAACCC
Statistics
Matches: 75, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
15 2 0.03
16 11 0.15
17 2 0.03
18 31 0.41
19 27 0.36
20 2 0.03
ACGTcount: A:0.43, C:0.38, G:0.04, T:0.15
Consensus pattern (18 bp):
CCATGAAACCTTAAACCA
Found at i:11392229 original size:19 final size:19
Alignment explanation
Indices: 11392106--11392230 Score: 102
Period size: 19 Copynumber: 6.8 Consensus size: 19
11392096 TATGCATTTT
11392106 CCATGAAA-CCTCAAACCAC
1 CCATGAAACCCT-AAACCAC
* *
11392125 CCATAAAATCCTAAACC-C
1 CCATGAAACCCTAAACCAC
* *
11392143 TCA--AAACCTTAAACCA-
1 CCATGAAACCCTAAACCAC
* *
11392159 CCATGAAACCTTAAACTA-
1 CCATGAAACCCTAAACCAC
*
11392177 CCATGAAACCCCAAACCAC
1 CCATGAAACCCTAAACCAC
* *
11392196 CCATGAATCCTTAAACCAC
1 CCATGAAACCCTAAACCAC
11392215 CCACT-AAACCCTAAAC
1 CCA-TGAAACCCTAAAC
11392231 TAAACCCCAA
Statistics
Matches: 86, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
16 12 0.14
18 30 0.35
19 40 0.47
20 4 0.05
ACGTcount: A:0.43, C:0.38, G:0.03, T:0.15
Consensus pattern (19 bp):
CCATGAAACCCTAAACCAC
Found at i:11392363 original size:11 final size:11
Alignment explanation
Indices: 11392343--11392374 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
11392333 CCTGACCTAA
11392343 ACCCTAAACCT
1 ACCCTAAACCT
*
11392354 ACCTTAAACCT
1 ACCCTAAACCT
11392365 ACCCTAAACC
1 ACCCTAAACC
11392375 ATAAGACCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.19
Consensus pattern (11 bp):
ACCCTAAACCT
Found at i:11403470 original size:21 final size:22
Alignment explanation
Indices: 11403439--11403484 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
11403429 CCTTATGAAG
* *
11403439 ATATAAAAGAATATCCTGAGGA
1 ATATAAAAGAAGATCCTAAGGA
11403461 ATAT-AAAGAAGATCCTAAGGA
1 ATATAAAAGAAGATCCTAAGGA
11403482 ATA
1 ATA
11403485 CATTTAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.52, C:0.09, G:0.17, T:0.22
Consensus pattern (22 bp):
ATATAAAAGAAGATCCTAAGGA
Found at i:11404649 original size:31 final size:31
Alignment explanation
Indices: 11404606--11404697 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 31
11404596 AGGGTAAAAA
11404606 TATTTTTGTTTATTTGAAAAGACCTTT-TTT-TT
1 TATTTTT-TTTATTTGAAAAGA--TTTATTTATT
* *
11404638 TCTTTTTTTTA-TTAAAAAGATTTATTTATT
1 TATTTTTTTTATTTGAAAAGATTTATTTATT
*
11404668 TATTTTTTATTATTGTGAAAA-TTTTATTTA
1 TATTTTTT-TTATT-TGAAAAGATTTATTTA
11404698 CAAATTTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
28 3 0.06
29 3 0.06
30 17 0.34
31 7 0.14
32 15 0.30
33 5 0.10
ACGTcount: A:0.27, C:0.03, G:0.07, T:0.63
Consensus pattern (31 bp):
TATTTTTTTTATTTGAAAAGATTTATTTATT
Found at i:11405245 original size:10 final size:10
Alignment explanation
Indices: 11405232--11405265 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
11405222 AAACTCATCC
11405232 AAACCTAAAA
1 AAACCTAAAA
*
11405242 AAACCCAAAA
1 AAACCTAAAA
11405252 AAATCCTAAAA
1 AAA-CCTAAAA
11405263 AAA
1 AAA
11405266 TTCCTAGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.71, C:0.21, G:0.00, T:0.09
Consensus pattern (10 bp):
AAACCTAAAA
Found at i:11405845 original size:26 final size:26
Alignment explanation
Indices: 11405816--11405927 Score: 98
Period size: 26 Copynumber: 4.3 Consensus size: 26
11405806 GACACAAATT
* * * *
11405816 GGCCTAATCGGGCTCGGACGTCAATG
1 GGCCTAATCGAGCCCAGACATCAATG
* *
11405842 GGCCTAATTGAGCCCAGACATCAATA
1 GGCCTAATCGAGCCCAGACATCAATG
* *
11405868 GGCCTAATTGGGCCCAGACATCAATG
1 GGCCTAATCGAGCCCAGACATCAATG
* * * * *
11405894 GACCCAATCGAGCTCGGATATCAATG
1 GGCCTAATCGAGCCCAGACATCAATG
*
11405920 AGCCTAAT
1 GGCCTAAT
11405928 TAGGCATGGA
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.29, C:0.27, G:0.25, T:0.20
Consensus pattern (26 bp):
GGCCTAATCGAGCCCAGACATCAATG
Found at i:11405845 original size:52 final size:52
Alignment explanation
Indices: 11405787--11405894 Score: 130
Period size: 52 Copynumber: 2.1 Consensus size: 52
11405777 TCGGGCAAGG
* * * * *
11405787 ATGGGCCTAATT-AGGCCCCGACA-CAAATTGGCCTAATCGGGCTCGGACGTCA
1 ATGGGCCTAATTGA-GCCCAGACATC-AATAGGCCTAATCGGGCCCAGACATCA
*
11405839 ATGGGCCTAATTGAGCCCAGACATCAATAGGCCTAATTGGGCCCAGACATCA
1 ATGGGCCTAATTGAGCCCAGACATCAATAGGCCTAATCGGGCCCAGACATCA
11405891 ATGG
1 ATGG
11405895 ACCCAATCGA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
52 46 0.96
53 2 0.04
ACGTcount: A:0.28, C:0.27, G:0.26, T:0.19
Consensus pattern (52 bp):
ATGGGCCTAATTGAGCCCAGACATCAATAGGCCTAATCGGGCCCAGACATCA
Found at i:11405917 original size:52 final size:51
Alignment explanation
Indices: 11405815--11405928 Score: 120
Period size: 52 Copynumber: 2.2 Consensus size: 51
11405805 CGACACAAAT
* * * * * * *
11405815 TGGCCTAATCGGGCTCGGACGTCAATGGGCCTAATTGAGCCCAGACATCAA
1 TGGCCTAATTGGGCCCAGACATCAATGGACCCAATCGAGCCCAGACATCAA
* * *
11405866 TAGGCCTAATTGGGCCCAGACATCAATGGACCCAATCGAGCTCGGATATCAA
1 T-GGCCTAATTGGGCCCAGACATCAATGGACCCAATCGAGCCCAGACATCAA
11405918 TGAGCCTAATT
1 TG-GCCTAATT
11405929 AGGCATGGAC
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
51 2 0.04
52 49 0.96
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (51 bp):
TGGCCTAATTGGGCCCAGACATCAATGGACCCAATCGAGCCCAGACATCAA
Found at i:11407509 original size:44 final size:44
Alignment explanation
Indices: 11407450--11407628 Score: 172
Period size: 44 Copynumber: 4.2 Consensus size: 44
11407440 ATTTTTTTTA
* * *
11407450 TTTTCTTTAGTTCAAGTTGCCTTTTC-GAGTTTTCAACTTGAACT
1 TTTTTTTTTGTTCAAGCTGCCTTTTCAG-GTTTTCAACTTGAACT
* * *
11407494 TTTTTTTTTGTTCAAGCTACTTTTTCAGGTTTTTAACTTG-ACT
1 TTTTTTTTTGTTCAAGCTGCCTTTTCAGGTTTTCAACTTGAACT
* * *
11407537 TTTTTTTAT-TT-AAGCTGTCTTTTCAGGTTTTCAACTTAAAC-
1 TTTTTTTTTGTTCAAGCTGCCTTTTCAGGTTTTCAACTTGAACT
* * * * *
11407578 TCTTTTTTTGTTTAAACTGCCCTTTT-GGGTTTTCAACTTGACCT
1 TTTTTTTTTGTTCAAGCTG-CCTTTTCAGGTTTTCAACTTGAACT
11407622 TTTTTTT
1 TTTTTTT
11407629 AATCAAGTAA
Statistics
Matches: 109, Mismatches: 20, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
41 29 0.27
42 6 0.06
43 30 0.28
44 43 0.39
45 1 0.01
ACGTcount: A:0.17, C:0.16, G:0.12, T:0.55
Consensus pattern (44 bp):
TTTTTTTTTGTTCAAGCTGCCTTTTCAGGTTTTCAACTTGAACT
Found at i:11407568 original size:85 final size:85
Alignment explanation
Indices: 11407470--11407629 Score: 200
Period size: 85 Copynumber: 1.9 Consensus size: 85
11407460 TTCAAGTTGC
* * * * *
11407470 CTTTTCGAGTTTTCAACTTGAACTTTTTTTTTTGTTCAAGCT-ACTTTTTCAGGTTTTTAACTTG
1 CTTTTCGAGTTTTCAACTTAAAC-TCTTTTTTTGTTCAAACTGACCTTTT-AGGTTTTCAACTTG
11407534 A-CTTTTTTTTATTTAAGCTGT
64 ACCTTTTTTTTATTTAAGCTGT
* * *
11407555 CTTTTC-AGGTTTTCAACTTAAACTCTTTTTTTGTTTAAACTGCCCTTTTGGGTTTTCAACTTGA
1 CTTTTCGA-GTTTTCAACTTAAACTCTTTTTTTGTTCAAACTGACCTTTTAGGTTTTCAACTTGA
11407619 CCTTTTTTTTA
65 CCTTTTTTTTA
11407630 ATCAAGTAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
84 29 0.45
85 35 0.55
ACGTcount: A:0.17, C:0.16, G:0.11, T:0.55
Consensus pattern (85 bp):
CTTTTCGAGTTTTCAACTTAAACTCTTTTTTTGTTCAAACTGACCTTTTAGGTTTTCAACTTGAC
CTTTTTTTTATTTAAGCTGT
Found at i:11407584 original size:43 final size:42
Alignment explanation
Indices: 11407470--11407629 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 42
11407460 TTCAAGTTGC
*
11407470 CTTTTC-GAGTTTTCAACTTGAACTTTTTTTTTTGTTCAAGCT-A
1 CTTTTCAG-GTTTTCAACTTGAACTTTTTTTTAT-TT-AAGCTGA
* *
11407513 CTTTTTCAGGTTTTTAACTTG-ACTTTTTTTTATTTAAGCTGT
1 C-TTTTCAGGTTTTCAACTTGAACTTTTTTTTATTTAAGCTGA
* * * *
11407555 CTTTTCAGGTTTTCAACTTAAACTCTTTTTTTGTTTAAACTGCC
1 CTTTTCAGGTTTTCAACTTGAACT-TTTTTTTATTTAAGCTG-A
* *
11407599 CTTTT-GGGTTTTCAACTTGACCTTTTTTTTA
1 CTTTTCAGGTTTTCAACTTGAACTTTTTTTTA
11407630 ATCAAGTAAA
Statistics
Matches: 99, Mismatches: 12, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
41 22 0.22
42 13 0.13
43 42 0.42
44 21 0.21
45 1 0.01
ACGTcount: A:0.17, C:0.16, G:0.11, T:0.55
Consensus pattern (42 bp):
CTTTTCAGGTTTTCAACTTGAACTTTTTTTTATTTAAGCTGA
Found at i:11418014 original size:13 final size:13
Alignment explanation
Indices: 11417969--11418024 Score: 59
Period size: 12 Copynumber: 4.7 Consensus size: 13
11417959 TATTAAAAAG
*
11417969 ATTTTT-TAATTT
1 ATTTTTATAAATT
11417981 ATTTTT-T--ATT
1 ATTTTTATAAATT
*
11417991 ATTTTGA-AAATT
1 ATTTTTATAAATT
11418003 ATTTTTATAAATT
1 ATTTTTATAAATT
11418016 ATTTTTATA
1 ATTTTTATA
11418025 CTTTTAGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
10 7 0.19
12 16 0.43
13 14 0.38
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (13 bp):
ATTTTTATAAATT
Found at i:11418105 original size:10 final size:11
Alignment explanation
Indices: 11418089--11418114 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
11418079 AATATATGTA
11418089 AAAAAAAAAAT
1 AAAAAAAAAAT
11418100 AAAAAAAAAAT
1 AAAAAAAAAAT
11418111 AAAA
1 AAAA
11418115 TGGGTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAAAAT
Found at i:11418160 original size:19 final size:19
Alignment explanation
Indices: 11418132--11418173 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
11418122 GAAATAAAAT
* *
11418132 AAAATCAAAATGAAATCAA
1 AAAATAAAAATAAAATCAA
*
11418151 AAAATAAAAATAAAATGAA
1 AAAATAAAAATAAAATCAA
11418170 AAAA
1 AAAA
11418174 AAACCTGCGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.14
Consensus pattern (19 bp):
AAAATAAAAATAAAATCAA
Found at i:11418176 original size:24 final size:24
Alignment explanation
Indices: 11418127--11418176 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
11418117 GGTTAGAAAT
**
11418127 AAAATAAAATCAAAATGAAATCAA
1 AAAATAAAATCAAAATGAAAAAAA
11418151 AAAATAAAAAT-AAAATGAAAAAAA
1 AAAAT-AAAATCAAAATGAAAAAAA
11418175 AA
1 AA
11418177 CCTGCGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.14
Consensus pattern (24 bp):
AAAATAAAATCAAAATGAAAAAAA
Found at i:11418619 original size:10 final size:10
Alignment explanation
Indices: 11418574--11418616 Score: 77
Period size: 10 Copynumber: 4.2 Consensus size: 10
11418564 AAACTCATCC
11418574 AAACCTAGAA
1 AAACCTAGAA
11418584 AAACCTAGAA
1 AAACCTAGAA
11418594 AAACCTAGAA
1 AAACCTAGAA
11418604 AAATCCTAGAA
1 AAA-CCTAGAA
11418615 AA
1 AA
11418617 TCCCAAAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 23 0.72
11 9 0.28
ACGTcount: A:0.60, C:0.19, G:0.09, T:0.12
Consensus pattern (10 bp):
AAACCTAGAA
Found at i:11419048 original size:14 final size:14
Alignment explanation
Indices: 11419031--11419081 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
11419021 AAAGAGGAAC
11419031 ACAAAAAAATAAAA
1 ACAAAAAAATAAAA
*
11419045 ACAAAAACA-AAAA
1 ACAAAAAAATAAAA
*
11419058 A-ATAAAAATAAAA
1 ACAAAAAAATAAAA
* *
11419071 ATAAAATAATA
1 ACAAAAAAATA
11419082 TAATATAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
12 5 0.17
13 10 0.33
14 15 0.50
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (14 bp):
ACAAAAAAATAAAA
Found at i:11419056 original size:20 final size:20
Alignment explanation
Indices: 11419031--11419081 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
11419021 AAAGAGGAAC
11419031 ACAAAAAAATAAAAACAAAA
1 ACAAAAAAATAAAAACAAAA
*
11419051 ACAAAAAAATAAAAATAAAA
1 ACAAAAAAATAAAAACAAAA
* *
11419071 ATAAAATAATA
1 ACAAAAAAATA
11419082 TAATATAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (20 bp):
ACAAAAAAATAAAAACAAAA
Found at i:11419104 original size:3 final size:3
Alignment explanation
Indices: 11419058--11419133 Score: 67
Period size: 3 Copynumber: 27.7 Consensus size: 3
11419048 AAAACAAAAA
* *
11419058 AAT AAA AAT AAA AAT AA- AAT AAT -AT AAT -AT AAT -AT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
11419101 AAT AAT GAT AAT AAT AAT -AT AAT -GT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
11419134 CAACTTAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
2 13 0.22
3 45 0.78
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:11419128 original size:5 final size:5
Alignment explanation
Indices: 11419071--11419129 Score: 73
Period size: 5 Copynumber: 11.2 Consensus size: 5
11419061 AAAAATAAAA
*
11419071 ATAAA ATAAT ATAAT ATAAT ATAAT ATAAT AATAAT GATAAT AATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT -ATAAT -ATAAT
*
11419119 ATAAT GTAAT A
1 ATAAT ATAAT A
11419130 ATAACAACTT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
5 33 0.69
6 15 0.31
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (5 bp):
ATAAT
Found at i:11419204 original size:26 final size:26
Alignment explanation
Indices: 11419175--11419268 Score: 98
Period size: 26 Copynumber: 3.6 Consensus size: 26
11419165 GGCAAGGATA
* *
11419175 GGCCTAATTGGGCCCAGACATAAATG
1 GGCCTAATTGGGCCCGGACATCAATG
* * *
11419201 GGCCTAATTAGGCCTGGACGTCAATG
1 GGCCTAATTGGGCCCGGACATCAATG
* * * **
11419227 AGCCCAATCGGGCTTGGACATCAATG
1 GGCCTAATTGGGCCCGGACATCAATG
11419253 GGCCTAATTGGGCCCG
1 GGCCTAATTGGGCCCG
11419269 AACACAAATA
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.24, C:0.26, G:0.30, T:0.20
Consensus pattern (26 bp):
GGCCTAATTGGGCCCGGACATCAATG
Found at i:11420814 original size:21 final size:21
Alignment explanation
Indices: 11420779--11420834 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
11420769 AATCTAAACT
* *
11420779 TTTTTTGTTACTTTTT-TTTTA
1 TTTTTTCTTA-TTTTTCTTTGA
*
11420800 TTTTTCTTTTATTTTTCTTTGA
1 TTTTT-TCTTATTTTTCTTTGA
11420822 TTTTTTCTTATTT
1 TTTTTTCTTATTT
11420835 GCATGCACAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.09, C:0.07, G:0.04, T:0.80
Consensus pattern (21 bp):
TTTTTTCTTATTTTTCTTTGA
Found at i:11422526 original size:15 final size:15
Alignment explanation
Indices: 11422506--11422541 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
11422496 TAATGATAGG
*
11422506 AGAAGATCTTTAAGA
1 AGAAGATCTTGAAGA
11422521 AGAAGATCTTGAAGA
1 AGAAGATCTTGAAGA
*
11422536 ATAAGA
1 AGAAGA
11422542 AAAAGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (15 bp):
AGAAGATCTTGAAGA
Found at i:11433290 original size:33 final size:32
Alignment explanation
Indices: 11433213--11433290 Score: 104
Period size: 32 Copynumber: 2.4 Consensus size: 32
11433203 GTTTTATCAT
*
11433213 ATTATAAGT-AATAAAGCAAATGAGCCTTGTCC
1 ATTATAA-TAAATAAAGCAAATGAGCCTTATCC
* *
11433245 ATTATAAAAAATAAAGCAAATGGGCCTTATCCC
1 ATTATAATAAATAAAGCAAATGAGCCTTAT-CC
11433278 ATTATAATAAATA
1 ATTATAATAAATA
11433291 TATTTTTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
32 26 0.65
33 14 0.35
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.28
Consensus pattern (32 bp):
ATTATAATAAATAAAGCAAATGAGCCTTATCC
Found at i:11433433 original size:32 final size:31
Alignment explanation
Indices: 11433387--11433454 Score: 100
Period size: 32 Copynumber: 2.2 Consensus size: 31
11433377 TCTAGGTCTT
*
11433387 TTTAATGGGCTTAATATTCATGTCCAGGCCC
1 TTTAATGGGCTTAATATTCATGTCCAAGCCC
* *
11433418 ATTTAATGGGTTTAATATTTATGTCCAAGCCC
1 -TTTAATGGGCTTAATATTCATGTCCAAGCCC
11433450 TTTAA
1 TTTAA
11433455 AATTTAAGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 5 0.15
32 28 0.85
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (31 bp):
TTTAATGGGCTTAATATTCATGTCCAAGCCC
Found at i:11442353 original size:15 final size:14
Alignment explanation
Indices: 11442309--11442364 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 14
11442299 TTGGTAATTT
*
11442309 TTTAATTTTTTTTA
1 TTTAAATTTTTTTA
* *
11442323 -TTAAATTATTTGA
1 TTTAAATTTTTTTA
11442336 TTTCAAATTTTTTTA
1 TTT-AAATTTTTTTA
*
11442351 TTTTAATTTATTTT
1 TTTAAATTT-TTTT
11442365 TCTAAAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.30
14 7 0.21
15 16 0.48
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (14 bp):
TTTAAATTTTTTTA
Found at i:11444362 original size:19 final size:21
Alignment explanation
Indices: 11444338--11444377 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
11444328 GCTCTTTAAG
*
11444338 TTCTG-TTA-ATGCTTTAATT
1 TTCTGTTTACATGCTTAAATT
11444357 TTCTGTTTACATGCTTAAATT
1 TTCTGTTTACATGCTTAAATT
11444378 GGCTAAGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 3 0.17
21 10 0.56
ACGTcount: A:0.23, C:0.12, G:0.10, T:0.55
Consensus pattern (21 bp):
TTCTGTTTACATGCTTAAATT
Found at i:11456543 original size:10 final size:10
Alignment explanation
Indices: 11456528--11456558 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
11456518 TATATCTTCT
11456528 ATATATTTTA
1 ATATATTTTA
11456538 ATATATTTTA
1 ATATATTTTA
11456548 AT-TATTTTA
1 ATATATTTTA
11456557 AT
1 AT
11456559 TAATAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
ATATATTTTA
Found at i:11456555 original size:9 final size:9
Alignment explanation
Indices: 11456531--11456560 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
11456521 ATCTTCTATA
11456531 TATTTTAAT
1 TATTTTAAT
11456540 ATATTTTAAT
1 -TATTTTAAT
11456550 TATTTTAAT
1 TATTTTAAT
11456559 TA
1 TA
11456561 ATAAAATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
TATTTTAAT
Found at i:11458968 original size:15 final size:15
Alignment explanation
Indices: 11458944--11458977 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
11458934 TAGTTTAAGT
* *
11458944 TTTTGCAAAAAGTTA
1 TTTTGAAAAAAATTA
11458959 TTTTGAAAAAAATTA
1 TTTTGAAAAAAATTA
11458974 TTTT
1 TTTT
11458978 TGTATATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGAAAAAAATTA
Found at i:11462167 original size:19 final size:21
Alignment explanation
Indices: 11462129--11462168 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
11462119 TTTCTAAATA
11462129 TTAGACTTTGACAAAACTTTG
1 TTAGACTTTGACAAAACTTTG
*
11462150 TTAG-CTTTGAC-CAACTTTG
1 TTAGACTTTGACAAAACTTTG
11462169 ACCCAAGCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 7 0.39
21 4 0.22
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TTAGACTTTGACAAAACTTTG
Found at i:11463093 original size:17 final size:17
Alignment explanation
Indices: 11463069--11463108 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
11463059 TTAAATAATA
*
11463069 TAATAAAATTATTATTT
1 TAATAAAATTAATATTT
*
11463086 TCATAAAATTAATATTT
1 TAATAAAATTAATATTT
11463103 TAATAA
1 TAATAA
11463109 TTTCTTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATAAAATTAATATTT
Found at i:11463260 original size:30 final size:27
Alignment explanation
Indices: 11463208--11463278 Score: 92
Period size: 30 Copynumber: 2.6 Consensus size: 27
11463198 AAATATAACT
11463208 ATTTTAATATTA-TATATATTTTAAAT
1 ATTTTAATATTAATATATATTTTAAAT
11463234 ATTTTAATAATTAATATTACTATTTTAAAT
1 ATTTTAAT-ATTAATA-TA-TATTTTAAAT
11463264 ATTATT-ATATTAATA
1 ATT-TTAATATTAATA
11463279 AAAATAATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
26 8 0.20
27 4 0.10
28 2 0.05
29 9 0.22
30 15 0.38
31 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (27 bp):
ATTTTAATATTAATATATATTTTAAAT
Found at i:11463276 original size:15 final size:15
Alignment explanation
Indices: 11463213--11463276 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 15
11463203 TAACTATTTT
11463213 AATATTATATATATTTTA
1 AATATTAT-TATA--TTA
11463231 AATATT-TTAATAATT-
1 AATATTATT-AT-ATTA
* *
11463246 AATATTACTATTTTA
1 AATATTATTATATTA
11463261 AATATTATTATATTA
1 AATATTATTATATTA
11463276 A
1 A
11463277 TAAAAATAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
14 2 0.05
15 22 0.58
16 4 0.11
17 3 0.08
18 7 0.18
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (15 bp):
AATATTATTATATTA
Found at i:11463451 original size:26 final size:25
Alignment explanation
Indices: 11463422--11463483 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 25
11463412 AATATTAACA
* *
11463422 ATTTCAATAATAAATGATTTCAATAT
1 ATTTTAATAATAAATAATTTCAA-AT
*
11463448 ATTTTAATAATAAATAATTTTAAAT
1 ATTTTAATAATAAATAATTTCAAAT
11463473 ATTTTAATAAT
1 ATTTTAATAAT
11463484 TATATTAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 13 0.39
26 20 0.61
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (25 bp):
ATTTTAATAATAAATAATTTCAAAT
Found at i:11468596 original size:20 final size:20
Alignment explanation
Indices: 11468561--11468619 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
11468551 TATTTACTCT
*
11468561 CCTTTCTCTTCTTTTTCTTC-C
1 CCTTT-TCTTCCTTTT-TTCTC
11468582 CCTTTTCTTCCTTTTTTCTC
1 CCTTTTCTTCCTTTTTTCTC
**
11468602 TTTTTTCTTCCTTATTTT
1 CCTTTTCTTCCTT-TTTT
11468620 TTAGGCGTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 3 0.09
20 21 0.64
21 9 0.27
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.68
Consensus pattern (20 bp):
CCTTTTCTTCCTTTTTTCTC
Found at i:11468598 original size:11 final size:11
Alignment explanation
Indices: 11468572--11468619 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
11468562 CTTTCTCTTC
*
11468572 TTTTTCTTCCC
1 TTTTTCTTCCT
*
11468583 CTTTTCTTCCT
1 TTTTTCTTCCT
11468594 TTTTTC-T-CT
1 TTTTTCTTCCT
11468603 TTTTTCTTCCT
1 TTTTTCTTCCT
11468614 TATTTT
1 T-TTTT
11468620 TTAGGCGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.26
10 2 0.06
11 17 0.55
12 4 0.13
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTTCTTCCT
Found at i:11471857 original size:19 final size:20
Alignment explanation
Indices: 11471835--11471880 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
11471825 ATTGTTAATA
*
11471835 GTTTATATTA-ATGTTTATG
1 GTTTATATTATATGTTTAGG
*
11471854 GTTTATA-TATTTGTTTAGG
1 GTTTATATTATATGTTTAGG
11471873 GTTTATAT
1 GTTTATAT
11471881 ATTGAACATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 21 0.91
ACGTcount: A:0.24, C:0.00, G:0.17, T:0.59
Consensus pattern (20 bp):
GTTTATATTATATGTTTAGG
Found at i:11471881 original size:19 final size:19
Alignment explanation
Indices: 11471846--11471883 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
11471836 TTTATATTAA
*
11471846 TGTTTATGGTTTATATATT
1 TGTTTAGGGTTTATATATT
11471865 TGTTTAGGGTTTATATATT
1 TGTTTAGGGTTTATATATT
11471884 GAACATGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61
Consensus pattern (19 bp):
TGTTTAGGGTTTATATATT
Found at i:11471926 original size:14 final size:14
Alignment explanation
Indices: 11471878--11471928 Score: 57
Period size: 16 Copynumber: 3.4 Consensus size: 14
11471868 TTAGGGTTTA
11471878 TATATTGAACATGT
1 TATATTGAACATGT
*
11471892 TATCTAATGAACAATTGT
1 TA--TATTGAAC-A-TGT
11471910 TATATTGAACATGT
1 TATATTGAACATGT
11471924 TATAT
1 TATAT
11471929 AATAGGATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
14 10 0.32
15 1 0.03
16 14 0.45
17 1 0.03
18 5 0.16
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.43
Consensus pattern (14 bp):
TATATTGAACATGT
Found at i:11472620 original size:17 final size:18
Alignment explanation
Indices: 11472598--11472631 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
11472588 TCAATATTTA
11472598 TAACAAA-TAATTAAAAT
1 TAACAAAGTAATTAAAAT
11472615 TAACAAAGTAATTAAAA
1 TAACAAAGTAATTAAAA
11472632 ATCATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
TAACAAAGTAATTAAAAT
Found at i:11474952 original size:20 final size:20
Alignment explanation
Indices: 11474927--11474966 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
11474917 TGTGATTTTG
*
11474927 GGATTAGTTTGATGGATTTA
1 GGATTAGTTTAATGGATTTA
11474947 GGATTAGTTTAATGGATTTA
1 GGATTAGTTTAATGGATTTA
11474967 AGGTTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.45
Consensus pattern (20 bp):
GGATTAGTTTAATGGATTTA
Found at i:11476863 original size:26 final size:26
Alignment explanation
Indices: 11476811--11476863 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
11476801 TTTGTTTTGA
* *
11476811 TTTAATTGGATATATATAATTATTTT
1 TTTAATTAGATATATATAATTAATTT
* * *
11476837 TTTAATTATATATATTTATTTAATTT
1 TTTAATTAGATATATATAATTAATTT
11476863 T
1 T
11476864 ACTAGCTAGC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (26 bp):
TTTAATTAGATATATATAATTAATTT
Found at i:11486199 original size:17 final size:17
Alignment explanation
Indices: 11486177--11486209 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
11486167 TTCAATTATA
*
11486177 ATTTGAATAATTTTAAT
1 ATTTGAATAAATTTAAT
11486194 ATTTGAATAAATTTAA
1 ATTTGAATAAATTTAA
11486210 AATTATCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (17 bp):
ATTTGAATAAATTTAAT
Found at i:11486241 original size:25 final size:22
Alignment explanation
Indices: 11486208--11486264 Score: 60
Period size: 25 Copynumber: 2.5 Consensus size: 22
11486198 GAATAAATTT
*
11486208 AAAATTATCTAATTTGTAATTAAA
1 AAAACTATCTAATTTGTAA--AAA
* *
11486232 AGAAACTATCTTATTTTTAAAAA
1 A-AAACTATCTAATTTGTAAAAA
11486255 AAAACTATCT
1 AAAACTATCT
11486265 TATGAGTCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 9 0.31
23 4 0.14
24 1 0.03
25 15 0.52
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.39
Consensus pattern (22 bp):
AAAACTATCTAATTTGTAAAAA
Found at i:11486343 original size:2 final size:2
Alignment explanation
Indices: 11486338--11486362 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11486328 GTTATATAAT
11486338 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
11486363 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:11486988 original size:17 final size:17
Alignment explanation
Indices: 11486953--11486986 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
11486943 TTATTGTCTT
11486953 ATATAAATTTTTTAAAA
1 ATATAAATTTTTTAAAA
11486970 ATAT-AATTTTTTAAAA
1 ATATAAATTTTTTAAAA
11486986 A
1 A
11486987 ATCTAGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATAAATTTTTTAAAA
Found at i:11487053 original size:495 final size:487
Alignment explanation
Indices: 11486364--11487377 Score: 1430
Period size: 495 Copynumber: 2.1 Consensus size: 487
11486354 ACACACACAT
* *
11486364 ATATATATATATATATATTAGATATATTAGATTTAAGATGAAAATTTTATGAATTTTCAAAATCT
1 ATATATATATATATATA-TATATATATTAGATTTAAGATGAAAATTTTATGAATTTTCAAAATCC
* * * *
11486429 TAAATTAAGTTGCTTAAATTTTTAATGTCTTATGTAAATTTTTTTAAAATATAATTTTTTTAAAT
65 TAAATAAAGTTGCTTAAATTTTTAATGTCTTATATAAATTTTTTAAAAATATAATTTTTTAAAAT
* * *
11486494 CAAGATAAAAAAGATTGGTGAAAATTTTGGATAAACTTAATCTTTATAATTTTTAAACATGTTTA
130 CAAGATAAAAAAGATTCGTGAAAATTTTAGAGAAACTTAATCTTTATAATTTTTAAACATGTTTA
* * * ** *
11486559 AAAGATTTTGATAATTAAATACTTTTTTAAATAAGGTTATTTGGTACACAACTAAAATTATTTAT
195 AAAGATTTTGATAATTAAATAATTTTTTAAACAAAGTTATTTAATAAACAACTAAAATTATTTAT
* *
11486624 TAAAAAAATAAAATTCATATTTTATATTTTTAATTTTAAAATATATATCTTTAAATTGATTTGA-
260 T----AAA-AAAA-TCATATTTTATATTTTTAATTTTAAAAAATATATCTCTAAATTGATTTGAT
* * * *
11486688 TTTCAATTATAATTTGAATAATTTTGATATTTGAATAAATTTAAAATTATTTAATTTGTAATTAA
319 TTTCAATTATAATTTAAATAATTTTGATATTTGAATAAATGTAAAATTATCTAATTTATAATTAA
*
11486753 AAGAAACTATCTTATTTTTTAAAAAAAACTATCATATATTTCATTTAAGAGAGTTG-TCTACATA
384 AAGAAACTATCTTATTTTTT-AAAAAAACTATCATATATGTCATTTAAGAGAGTTGTTC-ACATA
* * *
11486817 GACGCCCATG-TAGCAAACTTATTTATATATGTTGTTATATA
447 AACACCCATGTTA-CAAACTTATTTATATATATTGTTATATA
** *
11486858 AT-TA-ATATATATATATATATATATTAGATTTAAGAT-AATTTTTTTTTTTGAAATTTT-AAAA
1 ATATATATATATATATATATATATATTAGATTTAAGATGAA---AATTTTATG-AATTTTCAAAA
* * *
11486919 TCCTACATAAAGTTGCTTGAATTTTTATTGTCTTATATAAATTTTTTAAAAATATAATTTTTTAA
62 TCCTAAATAAAGTTGCTTAAATTTTTAATGTCTTATATAAATTTTTTAAAAATATAATTTTTT--
* * *
11486984 AAAATCTAGATAAAAAAGATTCGTGAAAATTTTAGAGAAACTTAATCTTTGTAATTTTTAAATAT
125 AAAATCAAGATAAAAAAGATTCGTGAAAATTTTAGAGAAACTTAATCTTTATAATTTTTAAACAT
* *
11487049 GTTTAAAAGATTTTGATGATTAAATAATTTTTTAAACAAAGTTATTTAATAAACAACTGAAATTA
190 GTTTAAAAGATTTTGATAATTAAATAATTTTTTAAACAAAGTTATTTAATAAACAACTAAAATTA
11487114 TTTATTAAAAAAATCATATTTTATATTTTTAATTTTAAAAAATATATCTCTAAATTGATTTGATT
255 TTTATTAAAAAAATCATATTTTATATTTTTAATTTTAAAAAATATATCTCTAAATTGATTTGATT
*
11487179 TTTAATTATAATTTAAATAATTTTGATATTTGAATAAATGTAAAATTATCTAATTTATAATTAAA
320 TTCAATTATAATTTAAATAATTTTGATATTTGAATAAATGTAAAATTATCTAATTTATAATTAAA
* * ** * *
11487244 AGAAATTATTTTATTTTTTAAAAAAACTATTTTGTGTGTCATTTAAGAGAGTTGTTCACATAAAC
385 AGAAACTATCTTATTTTTTAAAAAAACTATCATATATGTCATTTAAGAGAGTTGTTCACATAAAC
**
11487309 ACTTATGTTACAAACTTATTTATATATATTGTTATATA
450 ACCCATGTTACAAACTTATTTATATATATTGTTATATA
11487347 ATATATATATATATATATATATATATTAGAT
1 ATATATATATATATATATATATATATTAGAT
11487378 AAATTTCAAG
Statistics
Matches: 464, Mismatches: 45, Indels: 25
0.87 0.08 0.05
Matches are distributed among these distances:
489 118 0.25
490 90 0.19
491 48 0.10
492 11 0.02
493 68 0.15
494 8 0.02
495 121 0.26
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.46
Consensus pattern (487 bp):
ATATATATATATATATATATATATATTAGATTTAAGATGAAAATTTTATGAATTTTCAAAATCCT
AAATAAAGTTGCTTAAATTTTTAATGTCTTATATAAATTTTTTAAAAATATAATTTTTTAAAATC
AAGATAAAAAAGATTCGTGAAAATTTTAGAGAAACTTAATCTTTATAATTTTTAAACATGTTTAA
AAGATTTTGATAATTAAATAATTTTTTAAACAAAGTTATTTAATAAACAACTAAAATTATTTATT
AAAAAAATCATATTTTATATTTTTAATTTTAAAAAATATATCTCTAAATTGATTTGATTTTCAAT
TATAATTTAAATAATTTTGATATTTGAATAAATGTAAAATTATCTAATTTATAATTAAAAGAAAC
TATCTTATTTTTTAAAAAAACTATCATATATGTCATTTAAGAGAGTTGTTCACATAAACACCCAT
GTTACAAACTTATTTATATATATTGTTATATA
Found at i:11487336 original size:2 final size:2
Alignment explanation
Indices: 11487329--11487372 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
11487319 CAAACTTATT
*
11487329 TA TA TA TA T- TG T- TA TA TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11487368 TA TA T
1 TA TA T
11487373 TAGATAAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
1 3 0.08
2 36 0.92
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11487357 original size:489 final size:488
Alignment explanation
Indices: 11486362--11487370 Score: 1417
Period size: 489 Copynumber: 2.1 Consensus size: 488
11486352 ACACACACAC
*
11486362 ATAT-ATATATATATATATATTAGATATATTAGATTTAAGATGAAAATTTTATGAATTTTCAAAA
1 ATATAATATATATATATATA-TATATATATTAGATTTAAGATGAAAATTTTATGAATTTTCAAAA
* * * * *
11486426 TCTTAAATTAAGTTGCTTAAATTTTTAATGTCTTATGTAAATTTTTTTAAAATATAATTTTTTTA
65 TCCTAAATAAAGTTGCTTAAATTTTTAATGTCTTATATAAATTTTTTAAAAATATAATTTTTTAA
* * *
11486491 AATCAAGATAAAAAAGATTGGTGAAAATTTTGGATAAACTTAATCTTTATAATTTTTAAACATGT
130 AATCAAGATAAAAAAGATTCGTGAAAATTTTAGAGAAACTTAATCTTTATAATTTTTAAACATGT
* * * ** *
11486556 TTAAAAGATTTTGATAATTAAATACTTTTTTAAATAAGGTTATTTGGTACACAACTAAAATTATT
195 TTAAAAGATTTTGATAATTAAATAATTTTTTAAACAAAGTTATTTAATAAACAACTAAAATTATT
* *
11486621 TATTAAAAAAATAAAATTCATATTTTATATTTTTAATTTTAAAATATATATCTTTAAATTGATTT
260 TATT---AAAATAAAATTCATATTTTATATTTTTAATTTTAAAAAATATATCTCTAAATTGATTT
* * * *
11486686 GATTTCAATTATAATTTGAATAATTTTGATATTTGAATAAATTTAAAATTATTTAATTTGTAATT
322 GATTTCAATTATAATTTAAATAATTTTGATATTTGAATAAATGTAAAATTATCTAATTTATAATT
*
11486751 AAAAGAAACTATCTTATTTTTTAAAAAAAACTATCATATATTTCATTTAAGAGAGTTGTCTACAT
387 AAAAGAAACTATCTTATTTTTTAAAAAAAACTATCATATATGTCATTTAAGAGAGTTGTCTACAT
* * *
11486816 AGACGCCCATGTAGCAAACTTATTTATATATGTTGTT
452 AAACACCCATGTAGCAAACTTATTTATATATATTGTT
** *
11486853 ATATAAT-TAATATATATATATATATATATTAGATTTAAGAT-AATTTTTTTTTTTGAAATTTT-
1 ATATAATAT-ATATATATATATATATATATTAGATTTAAGATGAA---AATTTTATG-AATTTTC
* * *
11486915 AAAATCCTACATAAAGTTGCTTGAATTTTTATTGTCTTATATAAATTTTTTAAAAATATAATTTT
61 AAAATCCTAAATAAAGTTGCTTAAATTTTTAATGTCTTATATAAATTTTTTAAAAATATAATTTT
* *
11486980 TTAAAAAATCTAGATAAAAAAGATTCGTGAAAATTTTAGAGAAACTTAATCTTTGTAATTTTTAA
126 TT--AAAATCAAGATAAAAAAGATTCGTGAAAATTTTAGAGAAACTTAATCTTTATAATTTTTAA
* * *
11487045 ATATGTTTAAAAGATTTTGATGATTAAATAATTTTTTAAACAAAGTTATTTAATAAACAACTGAA
189 ACATGTTTAAAAGATTTTGATAATTAAATAATTTTTTAAACAAAGTTATTTAATAAACAACTAAA
11487110 ATTATTTATT-AAA-AAAA-TCATATTTTATATTTTTAATTTTAAAAAATATATCTCTAAATTGA
254 ATTATTTATTAAAATAAAATTCATATTTTATATTTTTAATTTTAAAAAATATATCTCTAAATTGA
*
11487172 TTTGATTTTTAATTATAATTTAAATAATTTTGATATTTGAATAAATGTAAAATTATCTAATTTAT
319 TTTGA-TTTCAATTATAATTTAAATAATTTTGATATTTGAATAAATGTAAAATTATCTAATTTAT
* * ** * *
11487237 AATTAAAAGAAATTATTTTATTTTTT-AAAAAAACTATTTTGTGTGTCATTTAAGAGAGTTGT-T
383 AATTAAAAGAAACTATCTTATTTTTTAAAAAAAACTATCATATATGTCATTTAAGAGAGTTGTCT
**
11487300 CACATAAACACTTATGTTA-CAAACTTATTTATATATATTGTT
448 -ACATAAACACCCATG-TAGCAAACTTATTTATATATATTGTT
11487342 ATATAATATATATATATATATATATATAT
1 ATATAATATATATATATATATATATATAT
11487371 ATTAGATAAA
Statistics
Matches: 461, Mismatches: 45, Indels: 26
0.87 0.08 0.05
Matches are distributed among these distances:
488 1 0.00
489 139 0.30
490 87 0.19
491 28 0.06
492 13 0.03
493 66 0.14
494 6 0.01
495 121 0.26
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.46
Consensus pattern (488 bp):
ATATAATATATATATATATATATATATATTAGATTTAAGATGAAAATTTTATGAATTTTCAAAAT
CCTAAATAAAGTTGCTTAAATTTTTAATGTCTTATATAAATTTTTTAAAAATATAATTTTTTAAA
ATCAAGATAAAAAAGATTCGTGAAAATTTTAGAGAAACTTAATCTTTATAATTTTTAAACATGTT
TAAAAGATTTTGATAATTAAATAATTTTTTAAACAAAGTTATTTAATAAACAACTAAAATTATTT
ATTAAAATAAAATTCATATTTTATATTTTTAATTTTAAAAAATATATCTCTAAATTGATTTGATT
TCAATTATAATTTAAATAATTTTGATATTTGAATAAATGTAAAATTATCTAATTTATAATTAAAA
GAAACTATCTTATTTTTTAAAAAAAACTATCATATATGTCATTTAAGAGAGTTGTCTACATAAAC
ACCCATGTAGCAAACTTATTTATATATATTGTT
Found at i:11487751 original size:17 final size:16
Alignment explanation
Indices: 11487731--11487771 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
11487721 AATTATGGGA
11487731 TTTAGTTAGTTATGAAT
1 TTTAGTTAGTTAT-AAT
*
11487748 TTTAATTAGTTATAAT
1 TTTAGTTAGTTATAAT
11487764 TGTTAGTT
1 T-TTAGTT
11487772 CAACTATAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (16 bp):
TTTAGTTAGTTATAAT
Found at i:11489618 original size:14 final size:14
Alignment explanation
Indices: 11489596--11489634 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
11489586 ATATTTCTTA
11489596 AAATT-TTTTATAT
1 AAATTATTTTATAT
*
11489609 AAATTATTTTTTAT
1 AAATTATTTTATAT
*
11489623 AAAATATTTTAT
1 AAATTATTTTAT
11489635 GTTAATTGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
AAATTATTTTATAT
Found at i:11490574 original size:6 final size:6
Alignment explanation
Indices: 11490565--11490640 Score: 80
Period size: 6 Copynumber: 12.7 Consensus size: 6
11490555 ACTTCCAATA
* * * * * * *
11490565 TTATTA TTATTA TTATTA TTGTTG TTGTTG TTGTTG TTGTTG TTATTG
1 TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG
*
11490613 TTATTG TTATTG TTATTG TTATTA TTAT
1 TTATTG TTATTG TTATTG TTATTG TTAT
11490641 CTTCACCTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 66 1.00
ACGTcount: A:0.17, C:0.00, G:0.16, T:0.67
Consensus pattern (6 bp):
TTATTG
Found at i:11490672 original size:19 final size:19
Alignment explanation
Indices: 11490648--11490684 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
11490638 TATCTTCACC
*
11490648 TTAATATTGATTAATGACT
1 TTAATATTGACTAATGACT
11490667 TTAATATTGACTAATGAC
1 TTAATATTGACTAATGAC
11490685 AGCCATTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (19 bp):
TTAATATTGACTAATGACT
Found at i:11491373 original size:863 final size:861
Alignment explanation
Indices: 11489756--11491391 Score: 2108
Period size: 863 Copynumber: 1.9 Consensus size: 861
11489746 TATTGATTAA
* *
11489756 TTATTATTATTATTATCTTCACCTTAATATTGATTAATGACTTGAATGTTGACTAATGATAACCA
1 TTATTATTATTATTATCTTCACCTTAATATTGATTAATGACTTGAATATTGACTAATGACAACCA
* *
11489821 TTAGGCAAATTAAATGCATGGTTCGTTATATATGTAGACAACAAATTTCATTCAAAATCTTTTAA
66 TTAGGCAAATTAAATGCATGGTTCATTACATATGTAGACAACAAATTTCATTCAAAATCTTTTAA
* *
11489886 AGTTTCTTTTTTAATTTAGATTAATTTGTTTTTTATTCAAAATTTGTCTCAATATGAATTTAATT
131 AGTTTCTTTTTTAATTTAGAATAATTTGTTTTTTATTCAAAATTTGTCTCAATATGAATTTAATC
* * * * *
11489951 TGACTTTCATGATTAACTAGACACGTGGCCCAAGCTACGTTGTGGTGCTAAATATTAGTTTTCGT
196 TGACTTTCATGATTAACTAGACACGTGGCCCAAGCAACATTGTGGTGCCAAACATTAATTTTCGT
*
11490016 CTAAAAAATACTTTGAATTAATTAATTAAAATAATAATATACATAATTTATTTTTAAAAATTAAC
261 CTAAAAAATACTTTGAATTAATTAATTAAAATAATAATATACACAATTTATTTTTAAAAATTAAC
* * * * * * *
11490081 CAAATAAAAGTGATATGAATCGTTAAGGAAAATCATAGAAGTAAGAAGAAATTTTATAGCGAAAT
326 CAAATAAAAGTGACATGAATCATCAAGGAAAATCAAAGAAGCAAGAAGAAATTCTACAGCGAAAT
** **
11490146 AGAAAAAAATAAAAAATAACTAAAATAGTGAATAAAATAAAAAATACAACAAAAAAATGTAAAAA
391 AG-AAAAAATAAAAAATAACTAAAATAAAGAATAAAATAAAAAATACAACAAAAAAACCTAAAAA
* * *
11490211 TAAAATCTAACAAAAAAAAAGAAAAGAAAAATATGATGAATATCAAACCTTGTAAATCTTAAAAA
455 TAAAATCAAACAAAAAAAAAGAAAAGAAAAATATGACGAATATCAAACCTTGTAAACCTTAAAAA
* * * * * * * * *
11490276 ATAGCAAATATAAGAAGAACTAGATCCAACTAAATTTCCATAAGTTTAAAGGGATATTATGCCAG
520 ATAGCAAAGACAAGAAGAACTAGATCCAACTAAAATACCATAAATCTAAAAGCATATTATGCCAA
* * * *
11490341 AGCATCAATGATGTGATCCTTCATGGAGATATTATAGAGGCTAATGTGATTCATGATAATGAGGA
585 AGCATCAATGATGTCATCCATCATAGAGATACTATAGAGGCTAA-GTGA-TC-----AATGAGGA
* * * * *
11490406 GGATCAAAACCTTATTGTGCCTCATTGAGTCTTATTACTCGTTTTAGAGCTAAAAAGCTTCATTT
643 GGATCAAAACCTTACTGTGCCTCATTAAGTCTTATTACTCGTTCTAGAGCCAAAAAGCTTCATTC
* * *
11490471 GGTCATTAACTTATTACTTAGATATAATTCAATCCAAATGGAAAACTTGGATAATGAAACTGTGA
708 GATCATTAACTTATTACTTAGACATAATTCAACCCAAATGGAAAACTTGGATAATGAAACTGTGA
11490536 AGAAGAAGCTTCGTTGCTTACTTCCAATATTATTATTATTATTATTATTGTTGTTGTTGTTGTTG
773 AGAAGAAGCTTCGTTGCTTACTTCCAATATTATTATTATTATTATTATTGTTGTTGTTGTTGTTG
11490601 TTGTTGTTATTGTTATTGTTATTG
838 TTGTTGTTATTGTTATTGTTATTG
* * *
11490625 TTATTGTTATTATTATCTTCACCTTAATATTGATTAATGACTTTAATATTGACTAATGACAGCCA
1 TTATTATTATTATTATCTTCACCTTAATATTGATTAATGACTTGAATATTGACTAATGACAACCA
* ** *
11490690 TTAGGCAAATTAAATGCATGGTTCATTACATATGTAGACAACCAATTTTGTTCAAGATC-TTT-A
66 TTAGGCAAATTAAATGCATGGTTCATTACATATGTAGACAACAAATTTCATTCAAAATCTTTTAA
*
11490753 A-TTT-TTTTTT-ATTTAGAATAATTTGTTTTTTATTCAAAATTTGTCTCAATATGTATTTAATC
131 AGTTTCTTTTTTAATTTAGAATAATTTGTTTTTTATTCAAAATTTGTCTCAATATGAATTTAATC
*** * * *
11490815 TGAC-TTCATGATTAACTAGAGGTGTGGCCTAAGCAACATTGTGGTTCCAAACATTAATTTTTGT
196 TGACTTTCATGATTAACTAGACACGTGGCCCAAGCAACATTGTGGTGCCAAACATTAATTTTCGT
11490879 CTAAAAAATACTTTGAATTAATTAATTAAAATAATAATATACACAATTTATTTTTAAAAATTAAC
261 CTAAAAAATACTTTGAATTAATTAATTAAAATAATAATATACACAATTTATTTTTAAAAATTAAC
* *
11490944 CAAATAAAAGTGACATG-ATCCATCAAGGAAAATCAAAGAAGCAAGAAGAAATTCTACATTC-AT
326 CAAATAAAAGTGACATGAAT-CATCAAGGAAAATCAAAGAAGCAAGAAGAAATTCTACA-GCGAA
* *
11491007 ATAG-AAAAA-AAAAACTAACTAAAATAAAGAATACAATAAAAAAATACAACACAAAAAACCTAA
389 ATAGAAAAAATAAAAAATAACTAAAATAAAGAATAAAAT-AAAAAATACAACA-AAAAAACCTAA
* * *
11491070 AAATGAAATCAAACAAAAAAAAAATAGAAAAGAATAATCTGACGAATATCAAA-CTATGTAAAAC
452 AAATAAAATCAAAC--AAAAAAAA-AGAAAAGAAAAATATGACGAATATCAAACCT-TGT-AAA-
*
11491134 CCTTGTAAAACCTTAAAAATAGCGAAGACAAGAAGAACTAGATCCAACTAAAATACCATAAATCT
511 CC-T-T---A----AAAAATAGCAAAGACAAGAAGAACTAGATCCAACTAAAATACCATAAATCT
** * *
11491199 AAAAGCATATTATGTTAAAGCATTAATGATG-CATTCCAT-ATAGAGATACTATGGAGGCTAA-T
567 AAAAGCATATTATGCCAAAGCATCAATGATGTCA-TCCATCATAGAGATACTATAGAGGCTAAGT
** * *
11491261 GA-C-A-GAGG-GGATTGAGACCATT-CTGTGCCTTCATTAAGTCTTATTACTTGTTCTAGAGCC
631 GATCAATGAGGAGGATCAAAACC-TTACTGTGCC-TCATTAAGTCTTATTACTCGTTCTAGAGCC
* * * * *
11491321 AAAGAG-TTACATTCGATCGTTGACTTGTTACTTAGACA-AATTCAGCCCAAATGGAAAACTTGG
694 AAAAAGCTT-CATTCGATCATTAACTTATTACTTAGACATAATTCAACCCAAATGGAAAACTTGG
11491384 ATAATGAA
758 ATAATGAA
11491392 GTCGTTGAGA
Statistics
Matches: 662, Mismatches: 82, Indels: 52
0.83 0.10 0.07
Matches are distributed among these distances:
860 24 0.04
861 18 0.03
862 23 0.03
863 213 0.32
864 124 0.19
865 35 0.05
866 6 0.01
867 3 0.00
868 4 0.01
869 114 0.17
871 1 0.00
872 1 0.00
873 3 0.00
875 20 0.03
876 73 0.11
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (861 bp):
TTATTATTATTATTATCTTCACCTTAATATTGATTAATGACTTGAATATTGACTAATGACAACCA
TTAGGCAAATTAAATGCATGGTTCATTACATATGTAGACAACAAATTTCATTCAAAATCTTTTAA
AGTTTCTTTTTTAATTTAGAATAATTTGTTTTTTATTCAAAATTTGTCTCAATATGAATTTAATC
TGACTTTCATGATTAACTAGACACGTGGCCCAAGCAACATTGTGGTGCCAAACATTAATTTTCGT
CTAAAAAATACTTTGAATTAATTAATTAAAATAATAATATACACAATTTATTTTTAAAAATTAAC
CAAATAAAAGTGACATGAATCATCAAGGAAAATCAAAGAAGCAAGAAGAAATTCTACAGCGAAAT
AGAAAAAATAAAAAATAACTAAAATAAAGAATAAAATAAAAAATACAACAAAAAAACCTAAAAAT
AAAATCAAACAAAAAAAAAGAAAAGAAAAATATGACGAATATCAAACCTTGTAAACCTTAAAAAA
TAGCAAAGACAAGAAGAACTAGATCCAACTAAAATACCATAAATCTAAAAGCATATTATGCCAAA
GCATCAATGATGTCATCCATCATAGAGATACTATAGAGGCTAAGTGATCAATGAGGAGGATCAAA
ACCTTACTGTGCCTCATTAAGTCTTATTACTCGTTCTAGAGCCAAAAAGCTTCATTCGATCATTA
ACTTATTACTTAGACATAATTCAACCCAAATGGAAAACTTGGATAATGAAACTGTGAAGAAGAAG
CTTCGTTGCTTACTTCCAATATTATTATTATTATTATTATTGTTGTTGTTGTTGTTGTTGTTGTT
ATTGTTATTGTTATTG
Found at i:11493141 original size:44 final size:43
Alignment explanation
Indices: 11493013--11493150 Score: 170
Period size: 44 Copynumber: 3.1 Consensus size: 43
11493003 AAAGAAAATA
** *
11493013 AAAAATTTAAAAGGCTCGCCTTCAACATTAGCTTTAAAACTTTG
1 AAAAATTTAAAAGGCTCTTCTTCAACA-TAGTTTTAAAACTTTG
* *
11493057 GAAAATTTAAAAGGCTCTTCCTT-AACAAAGGTTTTAAAACTTTG
1 AAAAATTTAAAAGGCTCTT-CTTCAACATA-GTTTTAAAACTTTG
*
11493101 AAAAATTTAAAAGGCTCTTCTTCAACATAGATTTTGAAACTTTAG
1 AAAAATTTAAAAGGCTCTTCTTCAACATAG-TTTTAAAACTTT-G
11493146 AAAAA
1 AAAAA
11493151 AAAAATAAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
43 5 0.06
44 67 0.83
45 9 0.11
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (43 bp):
AAAAATTTAAAAGGCTCTTCTTCAACATAGTTTTAAAACTTTG
Found at i:11493882 original size:8 final size:8
Alignment explanation
Indices: 11493871--11493907 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
11493861 TGTTTATTTA
11493871 TATATATT
1 TATATATT
*
11493879 TATATAAT
1 TATATATT
11493887 TATATATT
1 TATATATT
*
11493895 TAAATATT
1 TATATATT
11493903 TATAT
1 TATAT
11493908 TTAAAAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TATATATT
Found at i:11493911 original size:14 final size:16
Alignment explanation
Indices: 11493871--11493924 Score: 62
Period size: 14 Copynumber: 3.6 Consensus size: 16
11493861 TGTTTATTTA
*
11493871 TATATATTTATATAAT
1 TATATATTTAAATAAT
11493887 TATATATTTAAAT-AT
1 TATATATTTAAATAAT
11493902 T-TATATTTAAA-AAT
1 TATATATTTAAATAAT
*
11493916 AATAT-TTTA
1 TATATATTTA
11493925 TATTTTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 16 0.47
15 6 0.18
16 12 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATATATTTAAATAAT
Found at i:11493926 original size:20 final size:22
Alignment explanation
Indices: 11493897--11493947 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
11493887 TATATATTTA
11493897 AATA-TTTATA-TTT-AAAAAT
1 AATATTTTATATTTTAAAAAAT
11493916 AATATTTTATATTTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
11493938 AATATTTTAT
1 AATATTTTAT
11493948 TAATTTCGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 4 0.14
20 6 0.21
21 3 0.10
22 16 0.55
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:11496884 original size:142 final size:141
Alignment explanation
Indices: 11496546--11496946 Score: 474
Period size: 142 Copynumber: 2.9 Consensus size: 141
11496536 TACTCCATAT
* * * *
11496546 AAATGAAAATAATGTACATACAAAAATGTTTACATGGATAAATATGTATATGCAAATATATGTTT
1 AAATG-AAATAATGTACATACAAAAATGTTTACATGGATAAAAATGTATATGCAAATAAATATAT
* * * * *
11496611 GGAATACATA-GTA-AAAATAAGAATTCATATTCAAAACTATGTATAAAATTGAAAAGGGTAAAG
65 GCAATACATATATACAAAATAAGAATTCATATTCAAAACTATGTACAAAACTGAAAAGGGCAAAG
*
11496674 ATTCTCCCAAAC
130 ATTCTACCAAAC
* * * * *
11496686 AAATGAAATAATGTACATACAAATATGTTTGCATGGGTAAAAATGTAAATGTAAATAAATATATG
1 AAATGAAATAATGTACATACAAAAATGTTTACATGGATAAAAATGTATATGCAAATAAATATATG
* * * *
11496751 CAATGCATATATAGCAGAAACAAGAATTCACATTCAAAACTATGTACAAAACTGAAAA-GGCATA
66 CAATACATATATA-CA-AAATAAGAATTCATATTCAAAACTATGTACAAAACTGAAAAGGGCAAA
11496815 G-TTGCTACCAAAC
129 GATT-CTACCAAAC
* * * **
11496828 AAATGAAATAATGTATATATAAAAATGTTTACATGCATAAAAATGTATATGCAAATACCTATATG
1 AAATGAAATAATGTACATACAAAAATGTTTACATGGATAAAAATGTATATGCAAATAAATATATG
* *
11496893 CAATACCTAGTA-AC--AATAAGAATTCATATTCACAACTATGTACAAAACTGAAAA
66 CAATACATA-TATACAAAATAAGAATTCATATTCAAAACTATGTACAAAACTGAAAA
11496947 AAGTAAAAAA
Statistics
Matches: 221, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
138 37 0.17
139 58 0.26
140 7 0.03
141 3 0.01
142 77 0.35
143 39 0.18
ACGTcount: A:0.49, C:0.11, G:0.12, T:0.28
Consensus pattern (141 bp):
AAATGAAATAATGTACATACAAAAATGTTTACATGGATAAAAATGTATATGCAAATAAATATATG
CAATACATATATACAAAATAAGAATTCATATTCAAAACTATGTACAAAACTGAAAAGGGCAAAGA
TTCTACCAAAC
Found at i:11496899 original size:13 final size:14
Alignment explanation
Indices: 11496873--11496901 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
11496863 CATAAAAATG
11496873 TATATGCAAATACC
1 TATATGCAAATACC
11496887 TATATGC-AATACC
1 TATATGCAAATACC
11496900 TA
1 TA
11496902 GTAACAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (14 bp):
TATATGCAAATACC
Found at i:11497684 original size:44 final size:44
Alignment explanation
Indices: 11497635--11497740 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 44
11497625 AAAAACTAGA
*
11497635 ACACATGAAAAATCGA-AATCTACAAAATAAACAAATAAATTAGT
1 ACACATGAAAAATC-ATAAGCTACAAAATAAACAAATAAATTAGT
* * *
11497679 ACACATAAAAAAAT-ATAGGCTACAAAATAAACAAATAAGTTAGT
1 ACACAT-GAAAAATCATAAGCTACAAAATAAACAAATAAATTAGT
* * *
11497723 GCACGTGAAGAATCATAA
1 ACACATGAAAAATCATAA
11497741 TAAAAACCAT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
43 6 0.12
44 38 0.76
45 6 0.12
ACGTcount: A:0.57, C:0.13, G:0.10, T:0.20
Consensus pattern (44 bp):
ACACATGAAAAATCATAAGCTACAAAATAAACAAATAAATTAGT
Found at i:11501454 original size:20 final size:22
Alignment explanation
Indices: 11501417--11501477 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 22
11501407 ATGAAAATGA
**
11501417 AAAAAAAAAGAAGAAAAATTAG
1 AAAAAAAAAGAAGAAAAACAAG
*
11501439 AAAAAAAAAG-CG-AAAACAAG
1 AAAAAAAAAGAAGAAAAACAAG
*
11501459 AAATAAAAA-AA-AAAAACAA
1 AAAAAAAAAGAAGAAAAACAA
11501478 TAAAGTGTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
20 21 0.66
21 1 0.03
22 10 0.31
ACGTcount: A:0.80, C:0.05, G:0.10, T:0.05
Consensus pattern (22 bp):
AAAAAAAAAGAAGAAAAACAAG
Found at i:11507383 original size:10 final size:9
Alignment explanation
Indices: 11507367--11507392 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
11507357 ATCAAACTTT
11507367 ATTTTTTTG
1 ATTTTTTTG
11507376 ATTTTTTTG
1 ATTTTTTTG
11507385 ATTTTTTT
1 ATTTTTTT
11507393 ATAAAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.08, T:0.81
Consensus pattern (9 bp):
ATTTTTTTG
Done.