Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 59 of 131
Found at i:11884160 original size:23 final size:23
Alignment explanation
Indices: 11884134--11884209 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
11884124 ATTATCATTA
11884134 TTATTATCATCAACTATTTGTTT
1 TTATTATCATCAACTATTTGTTT
* * ** *
11884157 TTATTACCATTTAA-TAATTCCTTA
1 TTATTATCA-TCAACT-ATTTGTTT
*
11884181 TTATTATTATCAACTATTTGTTT
1 TTATTATCATCAACTATTTGTTT
11884204 TTATTA
1 TTATTA
11884210 CCATTTAATA
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
23 23 0.59
24 16 0.41
ACGTcount: A:0.29, C:0.12, G:0.03, T:0.57
Consensus pattern (23 bp):
TTATTATCATCAACTATTTGTTT
Found at i:11884189 original size:50 final size:47
Alignment explanation
Indices: 11884131--11884225 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
11884121 CTTATTATCA
*
11884131 TTATTATTATCATCAACTATTTGTTTTTATTACCATTTAATAATTCC
1 TTATTATTATTATCAACTATTTGTTTTTATTACCATTTAATAATTCC
11884178 TTATTATTATTATCAACTATTTGTTTTTATTACCATTTAATAATTCC
1 TTATTATTATTATCAACTATTTGTTTTTATTACCATTTAATAATTCC
11884225 T
1 T
11884226 CAACATCTAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.29, C:0.14, G:0.02, T:0.55
Consensus pattern (47 bp):
TTATTATTATTATCAACTATTTGTTTTTATTACCATTTAATAATTCC
Found at i:11884254 original size:3 final size:3
Alignment explanation
Indices: 11884246--11884290 Score: 56
Period size: 3 Copynumber: 14.7 Consensus size: 3
11884236 GTAGAACTAC
*
11884246 TTA TTA TTA TTA TTA TTA TTA TTTA TTT TTAA TT- TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TT-A TTA TTA TTA TTA TT
11884291 TAATAATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.81
4 5 0.14
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:11884283 original size:16 final size:16
Alignment explanation
Indices: 11884246--11884294 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
11884236 GTAGAACTAC
*
11884246 TTATTATTATTATTATT
1 TTATTATTATT-TAATT
11884263 ATTATTTATT-TTTAATT
1 -TTA-TTATTATTTAATT
11884280 TTATTATTATTTAAT
1 TTATTATTATTTAAT
11884295 AATAATTCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 5 0.18
16 9 0.32
17 4 0.14
18 5 0.18
19 5 0.18
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTATTATTATTTAATT
Found at i:11884300 original size:22 final size:22
Alignment explanation
Indices: 11884258--11884301 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
11884248 ATTATTATTA
* **
11884258 TTATTATTATTTATTTTTAATT
1 TTATTATTATTTAATAATAATT
11884280 TTATTATTATTTAATAATAATT
1 TTATTATTATTTAATAATAATT
11884302 CTCCAACATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (22 bp):
TTATTATTATTTAATAATAATT
Found at i:11884452 original size:16 final size:16
Alignment explanation
Indices: 11884431--11884469 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
11884421 CAACTTTTTG
11884431 TTATTATTCTACTTTA
1 TTATTATTCTACTTTA
* *
11884447 TTATTATTTTATTTTA
1 TTATTATTCTACTTTA
11884463 TT-TTATT
1 TTATTATT
11884470 ATTTAAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTATTATTCTACTTTA
Found at i:11884463 original size:10 final size:11
Alignment explanation
Indices: 11884443--11884472 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
11884433 ATTATTCTAC
11884443 TTTATTATTAT
1 TTTATTATTAT
11884454 TTTATT-TTAT
1 TTTATTATTAT
11884464 TTTATTATT
1 TTTATTATT
11884473 TAAAGAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTATTATTAT
Found at i:11885369 original size:14 final size:14
Alignment explanation
Indices: 11885300--11885369 Score: 56
Period size: 13 Copynumber: 4.9 Consensus size: 14
11885290 TGATTGATTA
*
11885300 TTTTTGCTTTCTTT
1 TTTTTGGTTTCTTT
11885314 TTTTAT-GTTT-TTT
1 TTTT-TGGTTTCTTT
*
11885327 TTTTTGGGTTTGAGTTT
1 TTTTT-GGTTT--CTTT
*
11885344 TTTTTGG-GTCTTT
1 TTTTTGGTTTCTTT
11885357 TTTTTGGTTTCTT
1 TTTTTGGTTTCTT
11885370 GATGGGTGGC
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
12 1 0.02
13 17 0.38
14 15 0.33
15 2 0.04
16 2 0.04
17 8 0.18
ACGTcount: A:0.03, C:0.06, G:0.17, T:0.74
Consensus pattern (14 bp):
TTTTTGGTTTCTTT
Found at i:11886774 original size:34 final size:34
Alignment explanation
Indices: 11886687--11886774 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 34
11886677 CCTCTATTAA
*
11886687 TGGCATTTGTATCTAG-AAAATGCTGTTATTTTAG
1 TGGCATTTGTATC-AGAAAAATGCTGTTACTTTAG
* * *
11886721 TGGCATTTTTATTAGAAAAATGAC-GTTACTTTGG
1 TGGCATTTGTATCAGAAAAATG-CTGTTACTTTAG
*
11886755 TGGCGTTTGTATCAGAAAAA
1 TGGCATTTGTATCAGAAAAA
11886775 CGCCACTAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
33 2 0.04
34 42 0.93
35 1 0.02
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (34 bp):
TGGCATTTGTATCAGAAAAATGCTGTTACTTTAG
Found at i:11888429 original size:86 final size:86
Alignment explanation
Indices: 11888272--11888430 Score: 228
Period size: 86 Copynumber: 1.8 Consensus size: 86
11888262 TCAATCAGAC
* * * *
11888272 AAGTTTAATATCAAGTATTGAAGCTATCAAAACTGTTTAAATAGAACAATAACAACAAATTTGTA
1 AAGTTTAATATCAAGTATTGAAACTATCAAAACTATTAAAATAGAACAATAACAACAAATTTGCA
*
11888337 TTTTTACCAAAATAGATCGAT
66 TATTTACCAAAATAGATCGAT
* * ** *
11888358 AAGTTTAATATCATGTATTGAAACTATCAAAACTATTAAAATAGAACAATAACTATTAGTTTGCA
1 AAGTTTAATATCAAGTATTGAAACTATCAAAACTATTAAAATAGAACAATAACAACAAATTTGCA
11888423 TATTTACC
66 TATTTACC
11888431 TTTTAACGGC
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
86 63 1.00
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (86 bp):
AAGTTTAATATCAAGTATTGAAACTATCAAAACTATTAAAATAGAACAATAACAACAAATTTGCA
TATTTACCAAAATAGATCGAT
Found at i:11893693 original size:187 final size:185
Alignment explanation
Indices: 11893378--11893976 Score: 670
Period size: 187 Copynumber: 3.2 Consensus size: 185
11893368 TTGAAAGAAT
* * * *
11893378 TTATTAAAGGCGTCTTCTAGTGCAAAACGCCTTTAATATTCCACTACTCAAATTTTTAGATGGTT
1 TTATTAAAGGCATCTTCTAGTGAAAAACGCCTTCAATATTCCAC-ACTCAAATTTTAAGATGGTT
* ** * *
11893443 AGTGAAGGCGTTTATTCTAGAAAAACACTTTCACTG-ATTCCA-TTT-AATTTATGTACATAATT
65 AGTGAAGGCATTTATTCTAGAAAAATGCCTTCA-AGAATT-CATTTTAAATTT-TGTACATAATT
* * * * *
11893505 ATTGAAGGCATTTTTTGAGAACAAACACTTTTAATAATTTTATTTTAAAAATTTTTGGGA
127 ATTGAAGGCATTTTTTTAGAACAAACGCCTTCAATAATTTT-TTTTAAAAATATTTGGGA
* * *
11893565 TTATTAAAGGCATCTTCTAGTGAAAAATGCCTTCAATATACCAGCACTCAAATTTTAAGATGATT
1 TTATTAAAGGCATCTTCTAGTGAAAAACGCCTTCAATATTCCA-CACTCAAATTTTAAGATGGTT
* *
11893630 AGTGAAGGCATTTATTCCAGAAAAATGCCTTCAAGAATTCTTTTTAAATTTTGTACATAATTATT
65 AGTGAAGGCATTTATTCTAGAAAAATGCCTTCAAGAATTCATTTTAAATTTTGTACATAATTATT
* * ** *
11893695 AAAGGTATTTTTTTAGAACAAACGCCTTCAATAATTTTTTAAAAAAAGTATTTGAGA
130 GAAGGCATTTTTTTAGAACAAACGCCTTCAATAATTTTTTTTAAAAA-TATTTGGGA
* ** * * * * *
11893752 TTATTCAAGGGGTCTTCCAATGAAAAATGCCTTCAATATTCCATTACTCAAATTTTAAGACGGTT
1 TTATTAAAGGCATCTTCTAGTGAAAAACGCCTTCAATATTCCA-CACTCAAATTTTAAGATGGTT
* ** * *
11893817 AGTGAAGGCATTTATTATA-ACAAAATGCCTTCACTAATTCATTTTAATTTTTTTACATAATTAT
65 AGTGAAGGCATTTATTCTAGA-AAAATGCCTTCAAGAATTCATTTTAAATTTTGTACATAATTAT
** * *
11893881 TGAAGGTGTTTTTTTTAGAACAAATGCCTTCAATAATTTCCTTTTAAAAATATTTGGGA
129 TGAAGG-CATTTTTTTAGAACAAACGCCTTCAATAATTT-TTTTTAAAAATATTTGGGA
*
11893940 TTATTAAAGGCATCTT-TAGT-ATAAAACACCTTCAATA
1 TTATTAAAGGCATCTTCTAGTGA-AAAACGCCTTCAATA
11893977 ATGTTAAGGG
Statistics
Matches: 347, Mismatches: 56, Indels: 18
0.82 0.13 0.04
Matches are distributed among these distances:
186 11 0.03
187 273 0.79
188 56 0.16
189 7 0.02
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (185 bp):
TTATTAAAGGCATCTTCTAGTGAAAAACGCCTTCAATATTCCACACTCAAATTTTAAGATGGTTA
GTGAAGGCATTTATTCTAGAAAAATGCCTTCAAGAATTCATTTTAAATTTTGTACATAATTATTG
AAGGCATTTTTTTAGAACAAACGCCTTCAATAATTTTTTTTAAAAATATTTGGGA
Found at i:11894738 original size:12 final size:12
Alignment explanation
Indices: 11894721--11894772 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
11894711 TATACGATAT
11894721 TGGTATGCTGAA
1 TGGTATGCTGAA
*
11894733 TGGTATGTTGAA
1 TGGTATGCTGAA
**
11894745 TCATATGCTGAA
1 TGGTATGCTGAA
* *
11894757 TGGTTTGTTGAA
1 TGGTATGCTGAA
11894769 TGGT
1 TGGT
11894773 GTTTCTAAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.23, C:0.06, G:0.31, T:0.40
Consensus pattern (12 bp):
TGGTATGCTGAA
Found at i:11894756 original size:24 final size:24
Alignment explanation
Indices: 11894724--11894769 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
11894714 ACGATATTGG
11894724 TATGCTGAATGGTATGTTGAATCA
1 TATGCTGAATGGTATGTTGAATCA
*
11894748 TATGCTGAATGGTTTGTTGAAT
1 TATGCTGAATGGTATGTTGAAT
11894770 GGTGTTTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (24 bp):
TATGCTGAATGGTATGTTGAATCA
Found at i:11894866 original size:12 final size:12
Alignment explanation
Indices: 11894849--11894907 Score: 73
Period size: 12 Copynumber: 4.9 Consensus size: 12
11894839 TATGATATTG
11894849 GTATGCTGAATC
1 GTATGCTGAATC
*
11894861 GTATGCTAAATC
1 GTATGCTGAATC
* *
11894873 ATATGCTAAATC
1 GTATGCTGAATC
*
11894885 GTATGTTGAATC
1 GTATGCTGAATC
*
11894897 GTATACTGAAT
1 GTATGCTGAAT
11894908 GGTTTGTTGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 40 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.36
Consensus pattern (12 bp):
GTATGCTGAATC
Found at i:11894987 original size:25 final size:25
Alignment explanation
Indices: 11894915--11894980 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 25
11894905 AATGGTTTGT
* * * *
11894915 TGAATGGTGTTTTTGAATAGATTGC
1 TGAATGGTGTGTCTGAACACATTGC
11894940 TGAATGGTGTGTCTGAACACATTGC
1 TGAATGGTGTGTCTGAACACATTGC
* *
11894965 TGATTGGTTTG-CTGAA
1 TGAATGGTGTGTCTGAA
11894981 TGACATTTCT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
24 5 0.14
25 30 0.86
ACGTcount: A:0.23, C:0.09, G:0.29, T:0.39
Consensus pattern (25 bp):
TGAATGGTGTGTCTGAACACATTGC
Found at i:11897004 original size:11 final size:11
Alignment explanation
Indices: 11896988--11897012 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11896978 CCTATATAGA
11896988 GAGCTCAAGGG
1 GAGCTCAAGGG
11896999 GAGCTCAAGGG
1 GAGCTCAAGGG
11897010 GAG
1 GAG
11897013 ATAGTTGACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.16, G:0.48, T:0.08
Consensus pattern (11 bp):
GAGCTCAAGGG
Found at i:11898201 original size:35 final size:36
Alignment explanation
Indices: 11898145--11898215 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 36
11898135 ATATATAAAC
* * *
11898145 CAAATGTTTTTTTGGGCATAAATATACAATTGACTT
1 CAAATGTTTTTCTGGGCATAAACATACAACTGACTT
*
11898181 CAAATG-TTTTCTGGGCATAAACCTACAACTGACTT
1 CAAATGTTTTTCTGGGCATAAACATACAACTGACTT
11898216 AACATATACA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 25 0.81
36 6 0.19
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (36 bp):
CAAATGTTTTTCTGGGCATAAACATACAACTGACTT
Found at i:11898823 original size:298 final size:294
Alignment explanation
Indices: 11898351--11898888 Score: 700
Period size: 298 Copynumber: 1.8 Consensus size: 294
11898341 TCCCACCTAA
* * * **
11898351 AAATATATTATGTAGAATATTAAAGGCGTTTTGAGCAAAAAATACCTTCAAGAATCCGTTTCAAC
1 AAATATATTATGTAGAATATTAAAGGCATTTTAAGCAAAAAATACCTTCAAGAATCCATCCCAAC
*
11898416 TTTTTATATGGATTATTGAAGGCGTTTTTAAAAAAATCACATTCAATAATACCAACTAAAAATTA
66 TTTTTATATGGATTATTGAAGGCGTTTTTAAAAAAATCACATTCAATAATACAAACTAAAAATTA
** * *
11898481 ATTGAATGGATTATTGAAAGCACTTTCGCCCAAAAATGCCTTTAATAATCTG-TTTAATATTTTT
131 ATTGAATGGATTATTGAAAGCAAGTTCGCCCAAAAATACCTTTAAGAATC-GATTTAATATTTTT
* * *
11898545 CGTATGGATTATTAAGGGCATTTTTCTACCAAAAATGCCTTGAATAATCCCTAACAAAATACGTT
195 CGTATGGATTATTAAGGGCATTTCTCTACCAAAAACGCCTTCAATAATCCCTAACAAAATACGTT
11898610 TTTGAAAAAAATTACCTTCAACAATCTGACCATTC
260 TTTGAAAAAAATTACCTTCAACAATCTGACCATTC
* * * * *
11898645 AAATTTATTGTGTGGAATATTAAAGGCATTTTAAGCCAAAAATGCCTTCAAGAATCCATCCCAAC
1 AAATATATTATGTAGAATATTAAAGGCATTTTAAGCAAAAAATACCTTCAAGAATCCATCCCAAC
* * * ** * * * *
11898710 TTTTGTGTATGGATTATTGAAGTCATTTTTTTTTTAAAAATCGCCTTTAATAATGCAAACTAAAA
66 TTTT-TATATGGATTATTGAAGGC---GTTTTTAAAAAAATCACATTCAATAATACAAACTAAAA
* * * * *
11898775 ATTTATTGATTGGATTATTGAAGGCAAGTTCGGCCAAAAATACCTTTAAGAATCGATTTCATATT
127 ATTAATTGAATGGATTATTGAAAGCAAGTTCGCCCAAAAATACCTTTAAGAATCGATTTAATATT
** **
11898840 TTTTTTATGGATTATTAAGGGTGTTTCTCTACCAAAAACGCCTTCAATA
192 TTTCGTATGGATTATTAAGGGCATTTCTCTACCAAAAACGCCTTCAATA
11898889 TTCTCTCTCA
Statistics
Matches: 203, Mismatches: 36, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
294 59 0.29
295 17 0.08
297 1 0.00
298 126 0.62
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (294 bp):
AAATATATTATGTAGAATATTAAAGGCATTTTAAGCAAAAAATACCTTCAAGAATCCATCCCAAC
TTTTTATATGGATTATTGAAGGCGTTTTTAAAAAAATCACATTCAATAATACAAACTAAAAATTA
ATTGAATGGATTATTGAAAGCAAGTTCGCCCAAAAATACCTTTAAGAATCGATTTAATATTTTTC
GTATGGATTATTAAGGGCATTTCTCTACCAAAAACGCCTTCAATAATCCCTAACAAAATACGTTT
TTGAAAAAAATTACCTTCAACAATCTGACCATTC
Found at i:11900654 original size:5 final size:5
Alignment explanation
Indices: 11900653--11900725 Score: 51
Period size: 5 Copynumber: 14.4 Consensus size: 5
11900643 TCTTTTTATT
* * * *
11900653 TTTTA TTTTGA TTTTGA TTTTA ATTTA TTTTA TGTTA -TTT- TTTTA TATAA
1 TTTTA TTTT-A TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
* *
11900703 TATTA TTGTTA TTTTA TATTA TT
1 TTTTA TT-TTA TTTTA TTTTA TT
11900726 ACTAGTAATG
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
4 5 0.09
5 33 0.61
6 16 0.30
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (5 bp):
TTTTA
Found at i:11900667 original size:19 final size:19
Alignment explanation
Indices: 11900633--11900673 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
11900623 GTTTCGAAAG
** *
11900633 TTTTTATTTTTCTTTTTAT
1 TTTTTATTTTGATTTTGAT
11900652 TTTTTATTTTGATTTTGAT
1 TTTTTATTTTGATTTTGAT
11900671 TTT
1 TTT
11900674 AATTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.12, C:0.02, G:0.05, T:0.80
Consensus pattern (19 bp):
TTTTTATTTTGATTTTGAT
Found at i:11900774 original size:5 final size:5
Alignment explanation
Indices: 11900752--11900798 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
11900742 TTTTAGAAAC
11900752 AAAT- AAAT- AAAT- AAATA AAATAA AAATA AAACTA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAAT-A AAATA AAA-TA AAATA AAATA AAA
11900799 ACTTAAAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
4 12 0.30
5 18 0.45
6 10 0.25
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:11900780 original size:11 final size:11
Alignment explanation
Indices: 11900764--11900799 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
11900754 ATAAATAAAT
11900764 AAATAAAATAA
1 AAATAAAATAA
11900775 AAATAAAACT-A
1 AAATAAAA-TAA
11900786 AAATAAAATAA
1 AAATAAAATAA
11900797 AAA
1 AAA
11900800 CTTAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 1 0.04
11 21 0.91
12 1 0.04
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:11900812 original size:16 final size:17
Alignment explanation
Indices: 11900752--11900806 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
11900742 TTTTAGAAAC
*
11900752 AAAT-AAATAAATAAATA
1 AAATAAAATAAA-AACTA
11900769 AAATAAAA-ATAAAACTA
1 AAATAAAATA-AAAACTA
11900786 AAATAAAATAAAAACTTA
1 AAATAAAATAAAAAC-TA
11900804 AAA
1 AAA
11900807 ATATAATATG
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
17 22 0.67
18 11 0.33
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (17 bp):
AAATAAAATAAAAACTA
Found at i:11901280 original size:9 final size:9
Alignment explanation
Indices: 11901261--11901293 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
11901251 TTTTTTTTAT
11901261 AATAA-TAA
1 AATAATTAA
11901269 AATAATTAA
1 AATAATTAA
11901278 AATAATTTAA
1 AATAA-TTAA
11901288 AATAAT
1 AATAAT
11901294 CATAATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 5 0.22
9 9 0.39
10 9 0.39
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
AATAATTAA
Found at i:11901386 original size:24 final size:24
Alignment explanation
Indices: 11901358--11901404 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
11901348 TAGGATCTTG
*
11901358 TCAAAAAGTT-GAGATGATCATAAT
1 TCAAAAAGTTAG-GATAATCATAAT
*
11901382 TCAAAGAGTTAGGATAATCATAA
1 TCAAAAAGTTAGGATAATCATAA
11901405 AATTTGTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.47, C:0.09, G:0.17, T:0.28
Consensus pattern (24 bp):
TCAAAAAGTTAGGATAATCATAAT
Found at i:11902881 original size:2 final size:2
Alignment explanation
Indices: 11902874--11902904 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
11902864 CTAAATTATT
11902874 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
11902905 TCTTCTTGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:11906889 original size:20 final size:19
Alignment explanation
Indices: 11906829--11906890 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 19
11906819 GAGTTGAGTC
*
11906829 TTAATTTTGGGTTTT-GGT
1 TTAATTTTTGGTTTTAGGT
11906847 TTAATTTTTGCAGTTTCTAGGT
1 TTAATTTTTG--GTTT-TAGGT
*
11906869 TTGATTTCTTGGTTTTAGGT
1 TTAATTT-TTGGTTTTAGGT
11906889 TT
1 TT
11906891 TTTCAATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
18 9 0.24
20 11 0.30
21 5 0.14
22 9 0.24
23 3 0.08
ACGTcount: A:0.13, C:0.05, G:0.23, T:0.60
Consensus pattern (19 bp):
TTAATTTTTGGTTTTAGGT
Found at i:11909087 original size:13 final size:13
Alignment explanation
Indices: 11909069--11909093 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11909059 TTTCTCATAA
11909069 TATTTTTCAAACG
1 TATTTTTCAAACG
11909082 TATTTTTCAAAC
1 TATTTTTCAAAC
11909094 TAGAATTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.04, T:0.48
Consensus pattern (13 bp):
TATTTTTCAAACG
Found at i:11911156 original size:310 final size:311
Alignment explanation
Indices: 11910576--11911182 Score: 932
Period size: 310 Copynumber: 2.0 Consensus size: 311
11910566 AAAGTGAGGC
* * * *
11910576 CAACTAGGCCTTATGGACGTAGGACGCCCCTTAACAATTTATCAATCCACATGGGACAAGCCCAC
1 CAACTAGGCCTTATGGACGTAGGACACCCCTTAACAATTTATCAACCCACATAGCACAAGCCCAC
*
11910641 AAAGTAAAGGAATCAAGACCAGTATCACCTAGGAGAAAGATGAACCTTATAGATGAGGAAAAAAG
66 AAAGTAAAGGAATCAAGACCAGTATCACCTAGGAGAAAGATGAACCTTATAGATAAGGAAAAAAG
*
11910706 AGAAAAGGACAACAAAAGAGAACAAAGCTCCAGGTTATTGCAGTGGAAGCAAAGGGAAATGGAAA
131 AGAAAAGGACAACAAAAGAGAACAAAGCTCCAGGTTATTGCAGTGGAAGCAAAAGGAAATGGAAA
* *
11910771 AAGCTAGCTCGTTTGATCAATGTTAAGACACAAGATACCATGACTGAGTTGGGGAAGAGGAAACA
196 AAGCTAGCTCGTTCGATCAATGTTAAGACACAAGATACCATGACTGAGTTGGGGAAGAAGAAACA
* *
11910836 GACGGTAAATGAAGGTGTTTGTATGCGAATGGAGATTGATGCTCCAATCAA
261 GACAGTAAATGAAGGTGTTTATATGCGAATGGAGATTGATGCTCCAATCAA
* ** *
11910887 CAACTGGGCCTTATGGGTGTAGGACACCCCTTAACAATTTATCAGCCCA-AGTAGCACAAGCCCA
1 CAACTAGGCCTTATGGACGTAGGACACCCCTTAACAATTTATCAACCCACA-TAGCACAAGCCCA
* * * * * *
11910951 CAATGTAAAGGAATCAAGGCCAGTATTACCTAGGAGAAAGATGGACCTTTTAGATAAGGGAAAAA
65 CAAAGTAAAGGAATCAAGACCAGTATCACCTAGGAGAAAGATGAACCTTATAGATAAGGAAAAAA
* *
11911016 GA-AAAGAGGACAAC-AAAGAGAACAAAGCTCTAGGTTGTTGCAGTGGAAGCAAAAGGAAATGGA
130 GAGAAA-AGGACAACAAAAGAGAACAAAGCTCCAGGTTATTGCAGTGGAAGCAAAAGGAAATGGA
*
11911079 AAAAGCTAGCTCGTTCGATCAATGTTAAGACACAAGATACCATGACTGAGTTGGGGAAGAAGAAG
194 AAAAGCTAGCTCGTTCGATCAATGTTAAGACACAAGATACCATGACTGAGTTGGGGAAGAAGAAA
* * * *
11911144 TAGATAGTAAATGAAGGTGTTTATGTGCTAATGGAGATT
259 CAGACAGTAAATGAAGGTGTTTATATGCGAATGGAGATT
11911183 AACGCTCCGA
Statistics
Matches: 267, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
310 145 0.54
311 122 0.46
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.20
Consensus pattern (311 bp):
CAACTAGGCCTTATGGACGTAGGACACCCCTTAACAATTTATCAACCCACATAGCACAAGCCCAC
AAAGTAAAGGAATCAAGACCAGTATCACCTAGGAGAAAGATGAACCTTATAGATAAGGAAAAAAG
AGAAAAGGACAACAAAAGAGAACAAAGCTCCAGGTTATTGCAGTGGAAGCAAAAGGAAATGGAAA
AAGCTAGCTCGTTCGATCAATGTTAAGACACAAGATACCATGACTGAGTTGGGGAAGAAGAAACA
GACAGTAAATGAAGGTGTTTATATGCGAATGGAGATTGATGCTCCAATCAA
Found at i:11912908 original size:12 final size:12
Alignment explanation
Indices: 11912891--11912915 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11912881 TAATCTCTGA
11912891 TAATGCTTTAAT
1 TAATGCTTTAAT
11912903 TAATGCTTTAAT
1 TAATGCTTTAAT
11912915 T
1 T
11912916 GCTTATGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (12 bp):
TAATGCTTTAAT
Found at i:11914609 original size:13 final size:13
Alignment explanation
Indices: 11914575--11914615 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
11914565 CCAAAAATAT
*
11914575 AAAATATCATTTA
1 AAAATATCATGTA
11914588 AAAATTATCATGTA
1 AAAA-TATCATGTA
*
11914602 GAAATATCATGTA
1 AAAATATCATGTA
11914615 A
1 A
11914616 GTAAATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.34
Consensus pattern (13 bp):
AAAATATCATGTA
Found at i:11916405 original size:19 final size:19
Alignment explanation
Indices: 11916383--11916456 Score: 71
Period size: 19 Copynumber: 3.9 Consensus size: 19
11916373 GATTAAACCA
*
11916383 AAAAATTAAAATTAAAATT
1 AAAAATTAAAATCAAAATT
** *
11916402 AAAAAATCCAAATCCAAATT
1 -AAAAATTAAAATCAAAATT
*
11916422 AAAAATTAAAATCGAAATT
1 AAAAATTAAAATCAAAATT
*
11916441 -AAAA-TGAAATCAAAAT
1 AAAAATTAAAATCAAAAT
11916457 CAACACCTTT
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
17 10 0.22
18 4 0.09
19 16 0.36
20 15 0.33
ACGTcount: A:0.65, C:0.08, G:0.03, T:0.24
Consensus pattern (19 bp):
AAAAATTAAAATCAAAATT
Found at i:11916455 original size:11 final size:12
Alignment explanation
Indices: 11916424--11916457 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
11916414 TCCAAATTAA
11916424 AAATTAAAATCG
1 AAATTAAAATCG
11916436 AAATTAAAAT-G
1 AAATTAAAATCG
*
11916447 AAATCAAAATC
1 AAATTAAAATC
11916458 AACACCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.62, C:0.09, G:0.06, T:0.24
Consensus pattern (12 bp):
AAATTAAAATCG
Found at i:11925975 original size:25 final size:25
Alignment explanation
Indices: 11925946--11925996 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
11925936 TTCATCATTT
11925946 AAGATCAAA-ATTAATCTCAAATCAA
1 AAGATCAAATA-TAATCTCAAATCAA
**
11925971 AAGATCACTTATAATCTCAAATCAA
1 AAGATCAAATATAATCTCAAATCAA
11925996 A
1 A
11925997 GGATTACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.53, C:0.18, G:0.04, T:0.25
Consensus pattern (25 bp):
AAGATCAAATATAATCTCAAATCAA
Found at i:11926005 original size:25 final size:25
Alignment explanation
Indices: 11925957--11926008 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
11925947 AGATCAAAAT
11925957 TAATCTCAAATCAAAAGATCACTTA
1 TAATCTCAAATCAAAAGATCACTTA
* *
11925982 TAATCTCAAATCAAAGGATTACTTA
1 TAATCTCAAATCAAAAGATCACTTA
11926007 TA
1 TA
11926009 CAAACATCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (25 bp):
TAATCTCAAATCAAAAGATCACTTA
Found at i:11929043 original size:130 final size:129
Alignment explanation
Indices: 11928636--11929029 Score: 390
Period size: 130 Copynumber: 3.0 Consensus size: 129
11928626 TTTTCATGCA
* * * * *
11928636 TATCAT-TAATGGAAATGATGTTTTGATAATTTC-ATAGGAAATTGTTTAGTAAATAACTATAAG
1 TATCATATAATGGAAAGGGTATTTTGATAATTTCAATA-G-AATTATTTAGTAAATAATTATAAG
* * * * *
11928699 ATAAGGGGTATTTTCATAATTATGACATGAAGGCATAATAGTCTATTTAG-TCA-TATGTCAGTT
64 ATAATGGGTATTTTCATAATTATGATAT-AAGGCATAATAGTCCATTTAGCTCACT-TGTAAATT
11928762 TCT
127 TCT
* * * * * * * *
11928765 TATCGTATAATGGAAAGGATATTTTGGT-ACTTCTATAGAGGATTAATTAGTAAATGATTATAAC
1 TATCATATAATGGAAAGGGTATTTTGATAATTTCAATAGA--ATTATTTAGTAAATAATTATAAG
* * * * * * *
11928829 ATAATGGGTATTTTTATAATTATGGTCTGATGGCATAATTGTCCATTTGGC-CACATGTAAATTT
64 ATAATGGGTATTTTCATAATTATGATAT-AAGGCATAATAGTCCATTTAGCTCACTTGTAAATTT
11928893 CT
128 CT
*
11928895 TATCATATAATGGAAAGGGTATTTTGCTAATTTCAAATAGAATTATTTAGTAAATAATTATAAGA
1 TATCATATAATGGAAAGGGTATTTTGATAATTTC-AATAGAATTATTTAGTAAATAATTATAAGA
* *
11928960 -AATGGTTTATTTTCATAATTATGATATAAGGGCATAATAGTCCATTT-GCTCACTTGTTAATTT
65 TAATGG-GTATTTTCATAATTATGATATAA-GGCATAATAGTCCATTTAGCTCACTTGTAAATTT
11929023 CT
128 CT
11929025 TATCA
1 TATCA
11929030 CATAGCACAA
Statistics
Matches: 216, Mismatches: 38, Indels: 21
0.79 0.14 0.08
Matches are distributed among these distances:
128 1 0.00
129 18 0.08
130 188 0.87
131 4 0.02
132 5 0.02
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (129 bp):
TATCATATAATGGAAAGGGTATTTTGATAATTTCAATAGAATTATTTAGTAAATAATTATAAGAT
AATGGGTATTTTCATAATTATGATATAAGGCATAATAGTCCATTTAGCTCACTTGTAAATTTCT
Found at i:11929056 original size:130 final size:129
Alignment explanation
Indices: 11928675--11929136 Score: 306
Period size: 130 Copynumber: 3.6 Consensus size: 129
11928665 TTTCATAGGA
* * * *
11928675 AATTGTTTAGTAAATAACTATAAGATAAGGGGTATTTTCATAATTATGACATGAA-GGCATAATA
1 AATTATTTAGTAAATAATTATAAGA-AATGGGTATTTTCATAATTATGATAT-AAGGGCATAATA
* * * * * * ** *** ** * * * * *
11928739 GTCTATTTAGTCATATGTCAGTTTCTTATCGTATAATGGAAAGGATATTTTGGTACTTCTATAGA
64 GTCCATTTGGCCACATGTAAATTTCTTATCACATAACACAAAGGGCATTTCGATAATT-TAAATA
11928804 G-
128 GC
* * * * * * * * * *
11928805 GATTAATTAGTAAATGATTATAACATAATGGGTATTTTTATAATTATGGTCTGATGGCATAATTG
1 AATTATTTAGTAAATAATTATAAGA-AATGGGTATTTTCATAATTATGATATAAGGGCATAATAG
* *** * * *
11928870 TCCATTTGGCCACATGTAAATTTCTTATCATATAATGGAAAGGGTATTTTGCTAATTTCAAATAG
65 TCCATTTGGCCACATGTAAATTTCTTATCACATAACACAAAGGGCATTTCGATAATTT-AAATAG
11928935 -
129 C
*
11928935 AATTATTTAGTAAATAATTATAAGAAATGGTTTATTTTCATAATTATGATATAAGGGCATAATAG
1 AATTATTTAGTAAATAATTATAAGAAATGG-GTATTTTCATAATTATGATATAAGGGCATAATAG
* * * * *
11929000 TCCATTT-GCTCACTTGTTAATTTCTTATCACATAGCACAAAGGGCATTTCGATAATTTGATTAG
65 TCCATTTGGC-CACATGTAAATTTCTTATCACATAACACAAAGGGCATTTCGATAATTTAAATAG
11929064 C
129 C
* * * * * * * *
11929065 GATTATTTTAG-AAATAATTCTAAGAAAAGAGGTATATTT-GTATTTATGGTATGAGTGCATAAT
1 AATTA-TTTAGTAAATAATTATAAGAAATG-GGTAT-TTTCATAATTATGATATAAGGGCATAAT
*
11929128 AGTCAATTT
63 AGTCCATTT
11929137 AATCATAACA
Statistics
Matches: 266, Mismatches: 58, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
129 13 0.05
130 244 0.92
131 9 0.03
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (129 bp):
AATTATTTAGTAAATAATTATAAGAAATGGGTATTTTCATAATTATGATATAAGGGCATAATAGT
CCATTTGGCCACATGTAAATTTCTTATCACATAACACAAAGGGCATTTCGATAATTTAAATAGC
Found at i:11929343 original size:130 final size:127
Alignment explanation
Indices: 11929136--11929443 Score: 334
Period size: 129 Copynumber: 2.4 Consensus size: 127
11929126 ATAGTCAATT
* * * * * *
11929136 TAATCATAACAGAAGAGGCATTTCCATAATTATGGTATGTGGCATAATCATCAATTTGATCACAC
1 TAATTATAAGAGAAGAGGCATTT-CATAATTATGATATGGGGCATAATAATCAATTTGACCACAC
* * *
11929201 GTCAATTTCTTATCATATAATGAAAATGGCATTTTGGTAAGTTCATA-GGATTTTATTTAGTAAA
65 GTCAATTTCTTATCATATAATGAAAATGGCATTTTGATAAATT-ATAGGGA-ATTATTTAGTAAA
** * *
11929265 TAATTATAAGAGAAGAGGCATGTTCATAATTATGATATGAGGGCATAATAATCTCTTTGGCCTCA
1 TAATTATAAGAGAAGAGGCAT-TTCATAATTATGATATG-GGGCATAATAATCAATTTGACCACA
* * * *
11929330 TGTCAATTTCTTATCGTATAATGAAAATGGCATTTTGATAAATTTTAGGGAATTATTTTGTAAA
64 CGTCAATTTCTTATCATATAATGAAAATGGCATTTTGATAAATTATAGGGAATTATTTAGTAAA
* * *
11929394 TAATTAAAAGAAAAG-GTGTATTTTCATAATTATTAGATAT-GGGCATAATA
1 TAATTATAAGAGAAGAG-GCA-TTTCATAATTA-T-GATATGGGGCATAATA
11929444 GTACATTTGG
Statistics
Matches: 152, Mismatches: 20, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
128 1 0.01
129 81 0.53
130 65 0.43
131 5 0.03
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (127 bp):
TAATTATAAGAGAAGAGGCATTTCATAATTATGATATGGGGCATAATAATCAATTTGACCACACG
TCAATTTCTTATCATATAATGAAAATGGCATTTTGATAAATTATAGGGAATTATTTAGTAAA
Found at i:11929453 original size:129 final size:129
Alignment explanation
Indices: 11929148--11929481 Score: 326
Period size: 129 Copynumber: 2.6 Consensus size: 129
11929138 ATCATAACAG
* * * * *
11929148 AAGAGGCAT-TTCCATAATTATGGTAT-GTGGCATAATCATCAATTT-GATCACACGTCAATTTC
1 AAGAGGCATGTT-CATAATTATGATATAG-GGCATAATAATCTATTTGGA-CGCATGTCAATTTC
* * * *
11929210 TTATCATATAATGAAAATGGCATTTTGGTAAGTTCATAGGATTTTATTTAGTAAATAATTATAAG
63 TTATCATATAATGAAAATGGCATTTTGATAAATTCATAGGATATTATTTAGTAAATAATTAAAAG
*
11929275 AG
128 AA
* * *
11929277 AAGAGGCATGTTCATAATTATGATATGAGGGCATAATAATCTCTTTGGCCTCATGTCAATTTCTT
1 AAGAGGCATGTTCATAATTATGATAT-AGGGCATAATAATCTATTTGGACGCATGTCAATTTCTT
* * *
11929342 ATCGTATAATGAAAATGGCATTTTGATAAATT-TTAGGGA-ATTATTTTGTAAATAATTAAAAGA
65 ATCATATAATGAAAATGGCATTTTGATAAATTCATA-GGATATTATTTAGTAAATAATTAAAAGA
11929405 A
129 A
* * * *
11929406 AAG-GTGTATTTTCATAATTATTAGATAT-GGGCATAATAGTAC-ATTTGGACGCATGCCAATTT
1 AAGAG-GCATGTTCATAATTA-T-GATATAGGGCATAATAAT-CTATTTGGACGCATGTCAATTT
*
11929468 -TTCATCAAATAATG
62 CTT-ATCATATAATG
11929482 GGATTGGCAA
Statistics
Matches: 171, Mismatches: 24, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
128 3 0.02
129 97 0.57
130 64 0.37
131 7 0.04
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (129 bp):
AAGAGGCATGTTCATAATTATGATATAGGGCATAATAATCTATTTGGACGCATGTCAATTTCTTA
TCATATAATGAAAATGGCATTTTGATAAATTCATAGGATATTATTTAGTAAATAATTAAAAGAA
Found at i:11929506 original size:21 final size:21
Alignment explanation
Indices: 11929482--11929522 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
11929472 TCAAATAATG
11929482 GGATTGGCAATTTTGTAATTA
1 GGATTGGCAATTTTGTAATTA
*
11929503 GGATTGGCAGTTTTGTAATT
1 GGATTGGCAATTTTGTAATT
11929523 TCGTATAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.05, G:0.27, T:0.44
Consensus pattern (21 bp):
GGATTGGCAATTTTGTAATTA
Found at i:11943918 original size:15 final size:14
Alignment explanation
Indices: 11943873--11943918 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
11943863 AGAAAGAAAG
11943873 AAAGAAAAACAATA
1 AAAGAAAAACAATA
*
11943887 AAAAAAAAACACA-A
1 AAAGAAAAACA-ATA
11943901 AAAGTAAAAACAATA
1 AAAG-AAAAACAATA
11943916 AAA
1 AAA
11943919 AAATAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.80, C:0.09, G:0.04, T:0.07
Consensus pattern (14 bp):
AAAGAAAAACAATA
Found at i:11943918 original size:16 final size:15
Alignment explanation
Indices: 11943873--11943919 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
11943863 AGAAAGAAAG
11943873 AAAGAAAAACAATAA
1 AAAGAAAAACAATAA
*
11943888 AAA-AAAAAC-ACAA
1 AAAGAAAAACAATAA
11943901 AAAGTAAAAACAATAA
1 AAAG-AAAAACAATAA
11943917 AAA
1 AAA
11943920 AATAATAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 6 0.22
14 6 0.22
15 9 0.33
16 6 0.22
ACGTcount: A:0.81, C:0.09, G:0.04, T:0.06
Consensus pattern (15 bp):
AAAGAAAAACAATAA
Found at i:11944992 original size:50 final size:49
Alignment explanation
Indices: 11944874--11944995 Score: 156
Period size: 50 Copynumber: 2.4 Consensus size: 49
11944864 GAGAAAAGAA
* * * *
11944874 AAATAATATTTTAAAGTTTCAAAGCCTCTGTTTAGGGGGAGCCATTTTC
1 AAATAAGATTTTAAAGTTTCAAAACCTCTATTTAGGGGAAGCCATTTTC
* *
11944923 AAACAAGACTTTTAGAGTTTCAAAACCTCTATTTAAGGGGAAGCCATTTTC
1 AAATAAGA-TTTTAAAGTTTCAAAACCTCTATTT-AGGGGAAGCCATTTTC
11944974 AAATAA-ATTTTCAAAGTTTCAA
1 AAATAAGATTTT-AAAGTTTCAA
11944996 TGCCTTTATT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
49 10 0.16
50 32 0.52
51 20 0.32
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (49 bp):
AAATAAGATTTTAAAGTTTCAAAACCTCTATTTAGGGGAAGCCATTTTC
Found at i:11945065 original size:22 final size:22
Alignment explanation
Indices: 11945037--11945095 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
11945027 TTGAGATTTG
11945037 TAAGACCTCC-GAGCATAATCTC
1 TAAGACCTCCAG-GCATAATCTC
*
11945059 TAAGACCTCCAGGCATAATTTC
1 TAAGACCTCCAGGCATAATCTC
* *
11945081 CAAGACATCCAGGCA
1 TAAGACCTCCAGGCA
11945096 AAACATTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 32 0.97
23 1 0.03
ACGTcount: A:0.34, C:0.31, G:0.15, T:0.20
Consensus pattern (22 bp):
TAAGACCTCCAGGCATAATCTC
Found at i:11945409 original size:22 final size:22
Alignment explanation
Indices: 11945367--11945412 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
11945357 GCATTCAAAG
*
11945367 ATTTTTAAAACCTCTAGGCATA
1 ATTTTTAAAACCTCGAGGCATA
11945389 ATTTTTAAAACCTTCGA-GCATA
1 ATTTTTAAAACC-TCGAGGCATA
11945411 AT
1 AT
11945413 CTATAAGTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (22 bp):
ATTTTTAAAACCTCGAGGCATA
Found at i:11945592 original size:15 final size:16
Alignment explanation
Indices: 11945571--11945611 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
11945561 TTAATTCACA
11945571 ATAAAAAAACAAAAAT
1 ATAAAAAAACAAAAAT
*
11945587 -TAAAAAAACCAAAAT
1 ATAAAAAAACAAAAAT
11945602 ATAGAAAAAA
1 ATA-AAAAAA
11945612 TAAGATTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 14 0.64
16 2 0.09
17 6 0.27
ACGTcount: A:0.78, C:0.07, G:0.02, T:0.12
Consensus pattern (16 bp):
ATAAAAAAACAAAAAT
Found at i:11945661 original size:37 final size:35
Alignment explanation
Indices: 11945618--11945749 Score: 122
Period size: 37 Copynumber: 3.6 Consensus size: 35
11945608 AAAATAAGAT
*
11945618 TTTCAAAGTTTCAAAACCTCAATTTAGAGGGAGCCA
1 TTTCAAAGTTTCAAAACCTCTATTTA-AGGGAGCCA
** * *
11945654 TCTTCAAAGTTTCAAGGCCTTTATCTAAGGGGAGCCA
1 T-TTCAAAGTTTCAAAACCTCTATTTAA-GGGAGCCA
** *
11945691 -TTCAAAAAGTTTCAAGGCCGCTATTTAAGGGAAGCCA
1 TTTC--AAAGTTTCAAAACCTCTATTTAAGGG-AGCCA
11945728 TTTTCAAAGTTTCAAAACCTCT
1 -TTTCAAAGTTTCAAAACCTCT
11945750 GTTTTAAAGG
Statistics
Matches: 78, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
35 3 0.04
36 5 0.06
37 67 0.86
39 3 0.04
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (35 bp):
TTTCAAAGTTTCAAAACCTCTATTTAAGGGAGCCA
Found at i:11945831 original size:37 final size:37
Alignment explanation
Indices: 11945781--11945936 Score: 129
Period size: 37 Copynumber: 4.2 Consensus size: 37
11945771 AAACAACATT
* *
11945781 TTTTTAAAATTTCAAGGCCGT-TGTTTAG-GGCGAGCCA
1 TTTTTAAAGTTTCAAAGCC-TCTGTTTAGAGG-GAGCCA
*
11945818 TTTTTAAAGTTTCAAAGCCTCTGTTTAGAGGGAGCTA
1 TTTTTAAAGTTTCAAAGCCTCTGTTTAGAGGGAGCCA
* ** * * *
11945855 TTTTCAAAGTTTTGAAGCCTCTATTTAGGGGGAACCA
1 TTTTTAAAGTTTCAAAGCCTCTGTTTAGAGGGAGCCA
*** * * *
11945892 TTCCCAAAGTTTCAAAACCTTTGTTCAG-GGGAAGCCA
1 TTTTTAAAGTTTCAAAGCCTCTGTTTAGAGGG-AGCCA
11945929 TTTTTAAA
1 TTTTTAAA
11945937 CAAGTTTAAA
Statistics
Matches: 94, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
36 4 0.04
37 88 0.94
38 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35
Consensus pattern (37 bp):
TTTTTAAAGTTTCAAAGCCTCTGTTTAGAGGGAGCCA
Found at i:11946641 original size:145 final size:143
Alignment explanation
Indices: 11946425--11946965 Score: 561
Period size: 144 Copynumber: 3.7 Consensus size: 143
11946415 AGAAGTACAC
* * * * * *
11946425 AATTACTAAAATA-TCATTTAAGGGTATTTTTATAATTTAGCCTTCTCGAGCTCAGATTTTCA-C
1 AATTA-TAAAATACCCATATAAGGGTA-TTTTATAATTTAGCCTTCCCAAGCTTAGATTTTCATG
* * * * * * * * *
11946488 AACTCTTTTTAAATCTCAATTTTATAGTAATTCATGATTTTTGGTACATTTAAAATCACAGCAAT
64 AA-ACTTTTCAGATCTCAATTTCATAATATTTCATGATTTTTGGTATATTTGAAATCACAGCAGT
11946553 A-CCTAGAGAAATGTGA
128 ACCCTAGA-AAATGTGA
* * * *
11946569 AATTATGAAAATACCCTTGTAAGGGTATTTTCATAATTTGGCCTTCCCAAGGTTAGATTTTCATG
1 AATTAT-AAAATACCCATATAAGGGTATTTT-ATAATTTAGCCTTCCCAAGCTTAGATTTTCATG
* * * *
11946634 AAACTTTTTATATCTCAATTTCATAATATTTCATGATTTTTGGTATATTTGAAATAACAGTAGTA
64 AAACTTTTCAGATCTCAATTTCATAATATTTCATGATTTTTGGTATATTTGAAATCACAGCAGTA
11946699 CCCTA-AAAAGTGTGA
129 CCCTAGAAAA-TGTGA
** * * * * * * *
11946714 AATTACCAAATACCCCTATAAGAGTATTTATATAATTTGGCCTTCACGAGCTTGGATTTTCTTGA
1 AATTATAAAATACCCATATAAGGGTATTT-TATAATTTAGCCTTCCCAAGCTTAGATTTTCATGA
* * * * *
11946779 AACTTTCCAGATCTTAATTTCATAATATTTCATGATTTTTGGTATAATTGAAATCATAACAGTAC
65 AACTTTTCAGATCTCAATTTCATAATATTTCATGATTTTTGGTATATTTGAAATCACAGCAGTAC
*
11946844 CCT-GAAAAATGTAA
130 CCTAG-AAAATGTGA
* * * * *
11946858 AATTACTAAAACACCCATATAAGGGAATTTTGTAATTTAGCCTTCCTAAGTTTAGATTTTCATGA
1 AATTA-TAAAATACCCATATAAGGGTATTTTATAATTTAGCCTTCCCAAGCTTAGATTTTCATGA
*
11946923 AACTTTTCAGATCTTAATTTCATAATATTTCATGATTTTTGGT
65 AACTTTTCAGATCTCAATTTCATAATATTTCATGATTTTTGGT
11946966 GTTTTAAAAT
Statistics
Matches: 333, Mismatches: 54, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
143 1 0.00
144 203 0.61
145 123 0.37
146 6 0.02
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (143 bp):
AATTATAAAATACCCATATAAGGGTATTTTATAATTTAGCCTTCCCAAGCTTAGATTTTCATGAA
ACTTTTCAGATCTCAATTTCATAATATTTCATGATTTTTGGTATATTTGAAATCACAGCAGTACC
CTAGAAAATGTGA
Found at i:11950472 original size:145 final size:139
Alignment explanation
Indices: 11950141--11950481 Score: 366
Period size: 139 Copynumber: 2.4 Consensus size: 139
11950131 AAATTTGAGC
* * * * * * *
11950141 TCAAGAATGTCAAATTACGAAAATACTTTTAAGGGGTATTTTCA-TAATTTCACACCTCTCGAGG
1 TCAAGAAGGTCAAATTACGAAAATACCTCTAAAGGGTATTTT-AGTAATTTCATACCTCCCAAGG
* * *
11950205 TACTGCTGTGATTTCAAATGCACCAAAAACCATAAGTTATAATTAAAATTTGAAAACATTTATGA
65 TACTGCTGTCATTTCAAATGCACCAAAAACCATAAATTATAATTAAAATCTGAAAACATTTATGA
*
11950270 AAATCCTAGA
130 AAATCCAAGA
* *
11950280 TCAAGAAGGTCAAATTATGAAAATACC-CTTAAGGGATATTTTAGTAATTTCATACCTCCCAAGG
1 TCAAGAAGGTCAAATTACGAAAATACCTCTAAAGGG-TATTTTAGTAATTTCATACCTCCCAAGG
* *
11950344 TATTGCTGTCATTTCAAATGCACCAAAAATCATGAAATATTATGAAATTAAAATCTGAAAA-AGT
65 TACTGCTGTCATTTCAAATGCACCAAAAACCAT--AA-ATTAT--AATTAAAATCTGAAAACA--
* **
11950408 TTTATGTAAATCCAACTT
123 TTTATGAAAATCCAA-GA
* * * *
11950426 TGAA-AAGGTTAAATTACGAAAATACCTCTAAAAGGTATTTTGGTAATTTCATACCT
1 TCAAGAAGGTCAAATTACGAAAATACCTCTAAAGGGTATTTTAGTAATTTCATACCT
11950482 TTCAACGTAT
Statistics
Matches: 167, Mismatches: 24, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
138 6 0.04
139 77 0.46
141 2 0.01
142 4 0.02
143 1 0.01
144 15 0.09
145 53 0.32
146 9 0.05
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (139 bp):
TCAAGAAGGTCAAATTACGAAAATACCTCTAAAGGGTATTTTAGTAATTTCATACCTCCCAAGGT
ACTGCTGTCATTTCAAATGCACCAAAAACCATAAATTATAATTAAAATCTGAAAACATTTATGAA
AATCCAAGA
Found at i:11951333 original size:128 final size:128
Alignment explanation
Indices: 11951123--11951605 Score: 481
Period size: 128 Copynumber: 3.7 Consensus size: 128
11951113 CTACAACCTC
* * ** *
11951123 ATACCATAATTACAAAAATACCTATTCTCTTA-AATTATTTACTAAATAATCACACAAGAAATTG
1 ATACCATAATTACAAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCCCTTAAG-AATTA
* * * *
11951187 CCAAAATGCCCTAT-CATTATATGATAAGAATTTTAGATGTGGCCAAATTGATTATTGTGCCCTT
65 CCAAAATG-CCTTTCCATTATATGATAAGAAATTTAGATATGGCCAAATTGATTATTATGCCCTT
** * * * *
11951251 ATACCATAATTATGAAAATACCCCTTCTATTCTAATTATTTACTAAATAATCCCTTAAGAATTAA
1 ATACCATAATTACAAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCCCTTAAGAATTAC
* * * * * * *
11951316 TAAAATGCCTTTCCATTATATGATAACAAATTT-GCATTTTGCCAAATGGACTATTATGTCCTT
66 CAAAATGCCTTTCCATTATATGATAAGAAATTTAG-ATATGGCCAAATTGATTATTATGCCCTT
* * * * * * *
11951379 ATACCATAATCACGAAAATAGCTCTTCTCTTATAATTGTTTACAAAACAATCCCCTATTA-AATT
1 ATACCATAATTACAAAAATACCTCTTCTCTTATAATTATTTACTAAATAAT-CCCT-TAAGAATT
* * * *
11951443 ACCAAAATGCCTTTTCTATTATATGCTAAAAAATTTACATATGGCCAAATTG-TCTATTATGCCC
64 ACCAAAATGCC-TTTCCATTATATGATAAGAAATTTAGATATGGCCAAATTGAT-TATTATGCCC
*
11951507 TC
127 TT
* * * *
11951509 ATATCATAATTACAAAAATATCTCTTCTCTTATAATTATTTTCTAAATAATCCCTTACAAAATTA
1 ATACCATAATTACAAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCCCTTA-AGAATTA
* * *
11951574 CCAAAATACCCTTTACATTACATGATAAGAAA
65 CCAAAAT-GCCTTTCCATTATATGATAAGAAA
11951606 CTAACATGTG
Statistics
Matches: 286, Mismatches: 58, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
127 5 0.02
128 119 0.42
129 45 0.16
130 115 0.40
131 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.36
Consensus pattern (128 bp):
ATACCATAATTACAAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCCCTTAAGAATTAC
CAAAATGCCTTTCCATTATATGATAAGAAATTTAGATATGGCCAAATTGATTATTATGCCCTT
Found at i:11951622 original size:130 final size:128
Alignment explanation
Indices: 11951119--11951632 Score: 496
Period size: 130 Copynumber: 4.0 Consensus size: 128
11951109 GTGTCTACAA
* *
11951119 CCTCATACCATAATTACAAAAATACCTATTCTCTTA-AATTATTTACTAAATAATCAC--ACAAG
1 CCTCATACCATAATTACAAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCCCTTAC-A-
* * * * * * *
11951181 AAATTGCCAAAATGCCCTATCATTATATGATAAGAATTTTAGATGTGGCCAAATTGATTATTGTG
64 AAATTACCAAAAT-CCCTTTCATTATATGATAAGAAATTTACATGTGGCCAAATGGACTATTATG
11951246 C
128 C
* ** * * * *
11951247 CCTTATACCATAATTATGAAAATACCCCTTCTATTCTAATTATTTACTAAATAATCCCTTA-AGA
1 CCTCATACCATAATTACAAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCCCTTACAAA
** * * * * * *
11951311 ATTAATAAAATGCCTTTCCATTATATGATAACAAATTTGCATTTTGCCAAATGGACTATTATGT
66 ATTACCAAAATCCCTTT-CATTATATGATAAGAAATTTACATGTGGCCAAATGGACTATTATGC
* * * * * * * * **
11951375 CCTTATACCATAATCACGAAAATAGCTCTTCTCTTATAATTGTTTACAAAACAATCCCCTATTAA
1 CCTCATACCATAATTACAAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCCCTTACAAA
* * * * * *
11951440 ATTACCAAAATGCCTTTTCTATTATATGCTAAAAAATTTACATATGGCCAAATTGTCTATTATGC
66 ATTACCAAAAT-CCCTTTC-ATTATATGATAAGAAATTTACATGTGGCCAAATGGACTATTATGC
* * *
11951505 CCTCATATCATAATTACAAAAATATCTCTTCTCTTATAATTATTTTCTAAATAATCCCTTACAAA
1 CCTCATACCATAATTACAAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCCCTTACAAA
* * * **
11951570 ATTACCAAAATACCCTTTACATTACATGATAAGAAACTAACATGTGATCAAATGGACTATTAT
66 ATTACCAAAAT-CCCTTT-CATTATATGATAAGAAATTTACATGTGGCCAAATGGACTATTAT
11951633 TCCCCTTTCT
Statistics
Matches: 306, Mismatches: 72, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
127 4 0.01
128 125 0.41
129 32 0.10
130 143 0.47
131 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (128 bp):
CCTCATACCATAATTACAAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCCCTTACAAA
ATTACCAAAATCCCTTTCATTATATGATAAGAAATTTACATGTGGCCAAATGGACTATTATGC
Found at i:11952099 original size:130 final size:127
Alignment explanation
Indices: 11951647--11952513 Score: 586
Period size: 130 Copynumber: 6.7 Consensus size: 127
11951637 CTTTCTAGTC
* * * * * ** * *
11951647 TATGAAAAGAAATTGAGATGCAGTCAAATGGACTATTATGACCTCATACTATAATTACGAAAA-A
1 TATGATAAGAAATTGACATGTAGCCAAATGAACTATTATTCCCTCATACCATAATTATGAAAATA
* * * ** * * *
11951711 TACCTTTTCTTTTATATTTATTCACTAAATAATCTCCCATGAAATTACCAAAATACCCTTTTCAT
66 T-CC--TTCTCTTATAATTATTTACTAAATAAT-TCTTAAGAAATTACCAAAAT-GCCTTTCCAT
*
11951776 TG
126 TA
* * * ** * * ** *
11951778 TATAATAAGAAATCGACATG-CGATTAACT-AGACTATTATGCTTTCATATCATAATTATGAAAA
1 TATGATAAGAAATTGACATGTAG-CCAAATGA-ACTATTATTCCCTCATACCATAATTATGAAAA
* * * * **
11951841 TA-CCTCTCCTCGTATAATTATTTTCTAAATAATATTTTATGAAATTACCAAAATATCTTTCCAT
64 TATCCT-T-CTCTTATAATTATTTACTAAATAAT-TCTTAAGAAATTACCAAAATGCCTTTCCAT
*
11951905 TG
126 TA
* ** * **
11951907 CATGATAAG-AATTGACATGTAATCAAATGAACTATTATTCCCTCCTACCATAATTACAAAAATA
1 TATGATAAGAAATTGACATGTAGCCAAATGAACTATTATTCCCTCATACCATAATTATGAAAATA
* * * * *
11951971 TTCCTTTTCTTAGAATTATTTACTAAACAATATCTTAAGAAATTACTAAAATGCCTTATCTATTA
66 -TCCTTCTCTTATAATTATTTACTAAATAAT-TCTTAAGAAATTACCAAAATGCCTT-TCCATTA
* * * *
11952036 TATGATAAGAATTTTACATGTAGCCAAATGAACTATTA-TGCCTGTATACCATAATTATGAAAAT
1 TATGATAAGAAATTGACATGTAGCCAAATGAACTATTATTCCCT-CATACCATAATTATGAAAAT
*
11952100 ATCCTATCTCTTATAATTATTTACTAAATAA-TCTTTCAAGAAATTACAAAAATGCCTTTTCC-T
65 ATCCT-TCTCTTATAATTATTTACTAAATAATTC-TT-AAGAAATTACCAAAATGCC-TTTCCAT
11952163 TA
126 TA
* * * * ** * * *
11952165 TATGAGTAA-AAATTAACATGTTGGCAAATGGACTATTACACCCTTATACTATAATAATGAAAAT
1 TATGA-TAAGAAATTGACATGTAGCCAAATGAACTATTATTCCCTCATACCATAATTATGAAAAT
* * * * *
11952229 ACTCATTTTCTTATAATTATTTACAAAATAATCCTCTATA-AAACTACCAAAATGTCCTTTCCAT
65 A-TCCTTCTCTTATAATTATTTACTAAATAATTCT-TA-AGAAATTACCAAAATG-CCTTTCCAT
11952293 TA
126 TA
* * * * * ** * * * * *
11952295 TATGATAAGAAATTTACATATGGCTAAATTAACTATTACGCTCACATATCATAATAACGAAAATA
1 TATGATAAGAAATTGACATGTAGCCAAATGAACTATTATTCCCTCATACCATAATTATGAAAATA
* * * * * **
11952360 TCCCTCCTCTTATAATTATTTACTAAATAATTTTCTATGAAATTATCAAAATACCATTTATATTA
66 T-CCTTCTCTTATAATTATTTACTAAATAATTCT-TAAGAAATTACCAAAATGCC-TTTCCATTA
* * * * * * *
11952425 CATGATAAGAAGTTGACATGTGGTCAAACGAACTATTATTCCCTCATATCATAATTATGAAAAAA
1 TATGATAAGAAATTGACATGTAGCCAAATGAACTATTATTCCCTCATACCATAATTATGAAAATA
*
11952490 CCCTTTCTCTTATAATTA-TTACTA
66 TCC-TTCTCTTATAATTATTTACTA
11952514 TATTCCCTTA
Statistics
Matches: 582, Mismatches: 125, Indels: 60
0.76 0.16 0.08
Matches are distributed among these distances:
128 84 0.14
129 149 0.26
130 300 0.52
131 48 0.08
132 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.37
Consensus pattern (127 bp):
TATGATAAGAAATTGACATGTAGCCAAATGAACTATTATTCCCTCATACCATAATTATGAAAATA
TCCTTCTCTTATAATTATTTACTAAATAATTCTTAAGAAATTACCAAAATGCCTTTCCATTA
Found at i:11952331 original size:259 final size:255
Alignment explanation
Indices: 11951809--11952479 Score: 636
Period size: 259 Copynumber: 2.6 Consensus size: 255
11951799 GATTAACTAG
* * *
11951809 ACTATTATGCTTTCATATCATAATTATGAAAATA-CCTCTCCTCGTATAATTATTTTCTAAATAA
1 ACTATTATGCTAT-ATATCATAATTATGAAAATATCCT-T-CTCTTATAATTATTTACTAAATAA
* * * * * * *
11951873 TATTTTATGAAATTACCAAAATATCTTTCCATTGCATGATAAGAATTGACATGTAATCAAATGAA
63 T-TTTCATGAAATTACAAAAATACCTTTCCATTACATGATAAAAATTAACATGTAAGCAAATGAA
** * * * * *
11951938 CTATTATTCCCTCCTACCATAATTACAAAAATATTCCTTTTCTTAGAATTATTTACTAAACAATA
127 CTATTACACCCTCATACCATAATAACAAAAATACTCATTTTCTTAGAATTATTTACAAAACAATA
* * * * *
11952003 TCTTAAGAAATTACTAAAATGCCTTATCTATTATATGATAAGAATTTTACATGTAGCCAAATGA
192 TCTTAAGAAACTACCAAAATGCCTTATCCATTATATGATAAGAAATTTACATATAGCCAAATGA
* *
11952067 ACTATTATGCCTGTATACCATAATTATGAAAATATCCTATCTCTTATAATTATTTACTAAATAAT
1 ACTATTATG-CTATATATCATAATTATGAAAATATCCT-TCTCTTATAATTATTTACTAAATAAT
* * * ** *
11952132 CTTTCAAGAAATTACAAAAATGCCTTTTCC-TTATATGAGTAAAAATTAACATGTTGGCAAATGG
64 -TTTCATGAAATTACAAAAATACC-TTTCCATTACATGA-TAAAAATTAACATGTAAGCAAATGA
* * ** * *
11952196 ACTATTACACCCTTATACTATAATAATGAAAATACTCATTTTCTTATAATTATTTACAAAATAAT
126 ACTATTACACCCTCATACCATAATAACAAAAATACTCATTTTCTTAGAATTATTTACAAAACAAT
* * *
11952261 -CCTCTATA-AAACTACCAAAATGTCCTT-TCCATTATATGATAAGAAATTTACATATGGCTAAA
191 ATCT-TA-AGAAACTACCAAAATG-CCTTATCCATTATATGATAAGAAATTTACATATAGCCAAA
*
11952323 TTA
253 TGA
* * * * *
11952326 ACTATTACGCTCACATATCATAATAACGAAAATATCCCTCCTCTTATAATTATTTACTAAATAAT
1 ACTATTATGCT-ATATATCATAATTATGAAAATAT-CCTTCTCTTATAATTATTTACTAAATAAT
** * * * *
11952391 TTTCTATGAAATTATC-AAAATACCATTTATATTACATGATAAGAAGTTGACATGT-GGTCAAAC
64 TTTC-ATGAAATTA-CAAAAATACC-TTTCCATTACATGATAA-AAATTAACATGTAAG-CAAAT
** *
11952454 GAACTATTATTCCCTCATATCATAAT
124 GAACTATTACACCCTCATACCATAAT
11952480 TATGAAAAAA
Statistics
Matches: 336, Mismatches: 63, Indels: 26
0.79 0.15 0.06
Matches are distributed among these distances:
258 83 0.25
259 203 0.60
260 50 0.15
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.37
Consensus pattern (255 bp):
ACTATTATGCTATATATCATAATTATGAAAATATCCTTCTCTTATAATTATTTACTAAATAATTT
TCATGAAATTACAAAAATACCTTTCCATTACATGATAAAAATTAACATGTAAGCAAATGAACTAT
TACACCCTCATACCATAATAACAAAAATACTCATTTTCTTAGAATTATTTACAAAACAATATCTT
AAGAAACTACCAAAATGCCTTATCCATTATATGATAAGAAATTTACATATAGCCAAATGA
Found at i:11952852 original size:127 final size:127
Alignment explanation
Indices: 11952700--11953458 Score: 426
Period size: 129 Copynumber: 6.0 Consensus size: 127
11952690 AAACCCTTAC
* * * *
11952700 AAAATTACAAAACTGCAC-ATCCCATTATTTGATGAGAAAGTTACATGTGTCCAAATGTACTATT
1 AAAATTACAAAAATGCCCTAT-CCATTATTTGATAAGAAAGTTACATGTGGCCAAATGTACTATT
* ***
11952764 ATGCCT-TTATATCTTAATTACAAAAATACCCCTTTTATAATTATTTACAAAATAATCTTTTAA
65 ATGCCTCTTATATCATAATTAC-AAAATACCCCTTTTATAATTATTTACAAAATAATCCCCTAA
* * * * *
11952827 AAAATTACAAAAATGCCCTATCCATTATATGATAAGAAACTGACATTTGGCGAAAT-TGACTA--
1 AAAATTACAAAAATGCCCTATCCATTATTTGATAAGAAAGTTACATGTGGCCAAATGT-ACTATT
* * * * *
11952889 ATACATTCTTATATCATAATTGCAAAATA-CCCTTTTATAATTATTTACTAAATAATCCCCTAT
65 ATGC-CTCTTATATCATAATTACAAAATACCCCTTTTATAATTATTTACAAAATAATCCCCTAA
* * * * * *
11952952 CAAATTACCAAAATACCCTTTCTATTATATT-ATAAG-AAGTTGACATGTGGCCAAATGAACTAT
1 AAAATTACAAAAATGCCCTATCCATTAT-TTGATAAGAAAGTT-ACATGTGGCCAAATGTACTAT
* ** * **
11953015 TATG-CTCTCATATCATAATTACGAAAATACATATTCTCTTATAATTATTTATGAAATAA-CCTC
64 TATGCCTCTTATATCATAATTAC-AAAATAC---CCCTTTTATAATTATTTACAAAATAATCC-C
11953078 CTAA
124 CTAA
* * ** * * * *
11953082 GAAATTATC-AAAATACTTTTTCTATTATATGATAAGAAATTTACATGTGGCCAAAT-TAACTAT
1 AAAATTA-CAAAAATGCCCTATCCATTATTTGATAAGAAAGTTACATGTGGCCAAATGT-ACTAT
* * * * * * * ** ***
11953145 TCTGCC-CTCATATAATAATTACCAAATTCCTCTTATCTTATTATTATTTATTAAATAATCTTTT
64 TATGCCTCTTATATCATAATTACAAAATACC-CCT-T-TTATAATTATTTACAAAATAATCCCCT
11953209 AA
126 AA
* * * *** * ** *
11953211 GAAATTATC-AAAAT-ACCTTTCACATTGCATGGTAAGAAA-TTGGTATGTGGCCAAATGAACTA
1 AAAATTA-CAAAAATGCCCTATC-CATTATTTGATAAGAAAGTT-ACATGTGGCCAAATGTACTA
* * ** * * * *
11953273 TTATG-CTATAATGCCATAATTACAAAAATATCCTACTCTTATAATTATTTACTAAATCATCCCC
63 TTATGCCTCTTATATCATAATTAC-AAAATA-CC-CCTTTTATAATTATTTACAAAATAATCCCC
*
11953337 TAT
125 TAA
* * * * * * * *
11953340 AAAATTACCAAAATGCCCTTTCCTTTA-ATAATAAGAAA-TTAACATATAGCCAAATGGACTATT
1 AAAATTACAAAAATGCCCTATCCATTATTTGATAAGAAAGTT-ACATGTGGCCAAATGTACTATT
* * * *
11953403 ATGCC-CTCAT-CCATAATTACGAAAATACCCATTTTATAATTATTTACTAAATAATC
65 ATGCCTCTTATATCATAATTAC-AAAATACCCCTTTTATAATTATTTACAAAATAATC
11953459 TCTTGGCCAA
Statistics
Matches: 494, Mismatches: 105, Indels: 68
0.74 0.16 0.10
Matches are distributed among these distances:
124 3 0.01
125 114 0.23
126 17 0.03
127 80 0.16
128 44 0.09
129 125 0.25
130 101 0.20
131 10 0.02
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.36
Consensus pattern (127 bp):
AAAATTACAAAAATGCCCTATCCATTATTTGATAAGAAAGTTACATGTGGCCAAATGTACTATTA
TGCCTCTTATATCATAATTACAAAATACCCCTTTTATAATTATTTACAAAATAATCCCCTAA
Found at i:11953094 original size:130 final size:130
Alignment explanation
Indices: 11952723--11953896 Score: 787
Period size: 130 Copynumber: 9.2 Consensus size: 130
11952713 TGCACATCCC
* * * * * * * *
11952723 ATTATTTGATGAGAAAGTT-ACATGTGTCCAAATGTACTATTATGC-CTTTATATCTTAATTACA
1 ATTATATGATAAGAAA-TTGACATGTGGCCAAATGAACTATTATGCTC-TCATACCATAATTACG
* * * ** * * * *
11952786 AAAATACC---CCTTTTATAATTATTTACAAAATAATCTTTTAAAAAATTACAAAAATGCCCTAT
64 AAAATACCTATTCTCTTATAATTATTTACTAAATAATCTCCTAAGAAATTACCAAAATACCCTTT
*
11952848 CC
129 CT
* * * * *** * * *
11952850 ATTATATGATAAGAAACTGACATTTGGCGAAATTG-ACTAATACATTCTTATATCATAATTGC-A
1 ATTATATGATAAGAAATTGACATGTGGCCAAA-TGAACTATTATGCTCTCATACCATAATTACGA
* * **
11952913 AAATACC----CTTTTATAATTATTTACTAAATAATCCCCTATCAAATTACCAAAATACCCTTTC
65 AAATACCTATTCTCTTATAATTATTTACTAAATAATCTCCTAAGAAATTACCAAAATACCCTTTC
11952974 T
130 T
* * *
11952975 ATTATATTATAAGAAGTTGACATGTGGCCAAATGAACTATTATGCTCTCATATCATAATTACGAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCTCTCATACCATAATTACGAA
* * * **
11953040 AATACATATTCTCTTATAATTATTTA-TGAAATAACCTCCTAAGAAATTATCAAAATACTTTTTC
66 AATACCTATTCTCTTATAATTATTTACT-AAATAATCTCCTAAGAAATTACCAAAATACCCTTTC
11953104 T
130 T
* * * * ** *
11953105 ATTATATGATAAGAAATTTACATGTGGCCAAATTAACTATTCTGCCCTCATATAATAATTAC-CA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCTCTCATACCATAATTACGAA
* * * * * ** *
11953169 AATTCCTCTTATCTTATTATTATTTATTAAATAATCTTTTAAGAAATTATCAAAATA-CCTTTCA
66 AATACCTATTCTCTTATAATTATTTACTAAATAATCTCCTAAGAAATTACCAAAATACCCTTTC-
*
11953233 C
130 T
** * ** * * * *
11953234 ATTGCATGGTAAGAAATTGGTATGTGGCCAAATGAACTATTATGCTATAATGCCATAATTACAAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCTCTCATACCATAATTACGAA
* * *
11953299 AATATCCTA--CTCTTATAATTATTTACTAAATCATCCCCTATA-AAATTACCAAAATGCCCTTT
66 AATA-CCTATTCTCTTATAATTATTTACTAAATAATCTCCTA-AGAAATTACCAAAATACCCTTT
11953361 CCT
129 -CT
* * * * * *
11953364 -TTA-ATAATAAGAAATTAACATATAGCCAAATGGACTATTATGCCCTCAT-CCATAATTACGAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCTCTCATACCATAATTACGAA
* ** * * *
11953426 AATACCCA-T-T-TTATAATTATTTACTAAATAATCT-CTTGGCCAATTACCAAAATA-TCTTTT
66 AATACCTATTCTCTTATAATTATTTACTAAATAATCTCCTAAG-AAATTACCAAAATACCCTTTC
11953486 T
130 T
* * * * * *** * * *
11953487 CGTTATATGGTAAAAAATTGACATGTAGCAAAATGGTTTATTTTGCCCTTC-TACCATAATTATG
1 -ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCTC-TCATACCATAATTACG
* * * ** *
11953551 -AAATACTCCTGTT-T-TTATAATTATATACTAAATAATCTCCTATGAAATTATGAAAATATCCT
64 AAAATA--CCTATTCTCTTATAATTATTTACTAAATAATCTCCTAAGAAATTACCAAAATA-CCC
11953613 TTTCGT
126 TTTC-T
* *
11953619 -TT-TATGATAAGAAA-TGAACATGTGGACAAAT-AGACTATTATGACGT-T-ATACCATAGTTA
1 ATTATATGATAAGAAATTG-ACATGTGGCCAAATGA-ACTATTATG-C-TCTCATACCATAATTA
* * * * ***
11953678 CGAAAATA-CTACATCTCTTATAATTATATACTAAATAATC-CCTCAATAAATTACTAAAATTTT
62 CGAAAATACCTA-TTCTCTTATAATTATTTACTAAATAATCTCCT-AAGAAATTACCAAAATACC
*
11953741 CTTTCC
125 CTTTCT
* * * *
11953747 ATTATATGATAAGAGATTGACATGTGGCCAAATGGAA-TATTATTCTCTCATA-TAGTAATTACA
1 ATTATATGATAAGAAATTGACATGTGGCCAAAT-GAACTATTATGCTCTCATACCA-TAATTACG
* *
11953810 AAAATA--TGACTTCTCTTATAATTATTTACTAAATAAT-TCACTAAAAAATTACCAAAATGCCC
64 AAAATACCT-A-TTCTCTTATAATTATTTACTAAATAATCTC-CTAAGAAATTACCAAAATACCC
11953872 TTT-T
126 TTTCT
11953876 CATTATATGATAAGAAATTGA
1 -ATTATATGATAAGAAATTGA
11953897 TGGTGACCAA
Statistics
Matches: 824, Mismatches: 169, Indels: 105
0.75 0.15 0.10
Matches are distributed among these distances:
123 1 0.00
124 8 0.01
125 130 0.16
126 59 0.07
127 73 0.09
128 48 0.06
129 224 0.27
130 267 0.32
131 12 0.01
132 2 0.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (130 bp):
ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCTCTCATACCATAATTACGAA
AATACCTATTCTCTTATAATTATTTACTAAATAATCTCCTAAGAAATTACCAAAATACCCTTTCT
Found at i:11953754 original size:259 final size:254
Alignment explanation
Indices: 11953311--11953781 Score: 550
Period size: 259 Copynumber: 1.8 Consensus size: 254
11953301 TATCCTACTC
* *
11953311 TTATAATTATTTACTAAATCATCCCCTATAAAATTACCAAAATGCCCTTTCCTTTAATAATAAGA
1 TTATAATTATATACTAAATAATCCCCTATAAAATTACCAAAATGCCCTTTCCTTTAATAATAAGA
* * * * *
11953376 AATTAACATATAGCCAAATGGACTATTATGCCCTCATCCATAATTACGAAAATACCCATTTTATA
66 AATGAACATATAGACAAATAGACTATTATGACCTCATCCATAATTACGAAAATACACATTTTATA
* * *** * * *
11953441 ATTATTTACTAAATAATCTCTTGGCCAATTACCAAAATATCTTTTTCGTTATATGGTAAAAAATT
131 ATTATATACTAAATAATCCCTCAACAAATTACCAAAATATCTTTTTCATTATATGATAAAAAATT
11953506 GACATGTAGCAAAATGGTTTATTTTGCCCTTCTACCATAATTATGAAATACTCCTGTTT
196 GACATGTAGCAAAATGGTTTATTTTGCCCTTCTACCATAATTATGAAATACTCCTGTTT
* * ** * * * * *
11953565 TTATAATTATATACTAAATAATCTCCTATGAAATTATGAAAATATCCTTTTCGTTTTATGATAAG
1 TTATAATTATATACTAAATAATCCCCTATAAAATTACCAAAAT-GCCCTTTCCTTTAATAATAAG
* * * * *
11953630 AAATGAACATGTGGACAAATAGACTATTATGACGTTATACCATAGTTACGAAAATACTACATCTC
65 AAATGAACATATAGACAAATAGACTATTATGACCTCAT-CCATAATTACGAAAATAC-ACAT-T-
* *
11953695 TTATAATTATATACTAAATAATCCCTCAATAAATTACTAAAAT-T-TTCTTTCCATTATATGATA
126 TTATAATTATATACTAAATAATCCCTCAACAAATTACCAAAATATCTT-TTT-CATTATATGATA
* * * *
11953758 AGAGATTGACATGTGGCCAAATGG
189 AAAAATTGACATGTAGCAAAATGG
11953782 AATATTATTC
Statistics
Matches: 175, Mismatches: 35, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
254 37 0.21
255 46 0.26
256 17 0.10
257 5 0.03
258 5 0.03
259 65 0.37
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (254 bp):
TTATAATTATATACTAAATAATCCCCTATAAAATTACCAAAATGCCCTTTCCTTTAATAATAAGA
AATGAACATATAGACAAATAGACTATTATGACCTCATCCATAATTACGAAAATACACATTTTATA
ATTATATACTAAATAATCCCTCAACAAATTACCAAAATATCTTTTTCATTATATGATAAAAAATT
GACATGTAGCAAAATGGTTTATTTTGCCCTTCTACCATAATTATGAAATACTCCTGTTT
Found at i:11954476 original size:129 final size:130
Alignment explanation
Indices: 11953934--11954596 Score: 330
Period size: 127 Copynumber: 5.2 Consensus size: 130
11953924 AATATTTTAA
* * ** * * * * * * *
11953934 TATATGATAAGAGATTGACATGTGGCCAAGTTGACTATTATGCCTTCATATAATAATTATGAAAA
1 TATATGATAAGAAATTAACATACGACCAAATAGACTATTATACATTCATATAAAAATTA-CAAAA
* * * * * * * * * ***
11953999 TACCCATTTCTTTTACAATTATTTGCTAAATAATCTCTTATAAAATTACCAAAATACCCTACCCA
65 AAACCACTACTTTTATAATTATTTACTAAAAAATCCCTTATAAAATTACCAAAATGCCCTTTTCA
*
11954064 A
130 T
* * * * * ** * * *
11954065 TATATGATAAGAAATTAACATGCGACCAAATGGACTATAATGCCTTCATACCATAATTACGAAAT
1 TATATGATAAGAAATTAACATACGACCAAATAGACTATTATACATTCATATAAAAATTACAAAAA
* * * * * * *
11954130 TACTC-CTA---TTATAATTATTTATTAAATAATCCCATATGAAATTACCAAAAT-ACTTTTTCT
66 AAC-CACTACTTTTATAATTATTTACTAAAAAATCCCTTATAAAATTACCAAAATGCCCTTTTC-
11954190 AT
129 AT
* * * ** * * * ** * * **
11954192 TATATGATAGGAAGTTAACTTGTGGCTAAATAGACTATTATGCCCTCATA-ACATAA--GCATGA
1 TATATGATAAGAAATTAACATACGACCAAATAGACTATTATACATTCATATA-AAAATTACAAAA
* ** * * * * * **
11954254 AAA-CAATTGTTCTCTTATTATTTACT-AAATAT-CATTATGGAATTACCAAAATGCCCTTTTCA
65 AAACCACTACTTTTATAATTATTTACTAAAAAATCCCTTATAAAATTACCAAAATGCCCTTTTCA
11954316 T
130 T
* * ** ** * * * * * *
11954317 TATATGATAATAAATTGACATGTGGGCAAATAGACT-TTTTGCCCTT-ATATGATAATTACGAAA
1 TATATGATAAGAAATTAACATACGACCAAATAGACTATTAT-ACATTCATATAAAAATTACAAAA
* * *
11954380 ATATCACTACTTTTATAATTATTCT-CTAAAAAATCCCTTA-AAAATTACCAAATTGCCCTTTTT
65 AAACCACTACTTTTATAATTATT-TACTAAAAAATCCCTTATAAAATTACCAAAATGCCC-TTTT
11954443 CAT
128 CAT
* * *
11954446 TATATGATTAGAAATTAACATACGACCAAATTGACTATTATACATTCATATAAAAATTATAAAAA
1 TATATGATAAGAAATTAACATACGACCAAATAGACTATTATACATTCATATAAAAATTACAAAAA
* * * * * *
11954511 AACCCCTTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTAGCAAAATGCCCTTTCCAT
66 AACCACTACTTTTATAATTATTTACTAAAAAATCCCTTATAAAATTACCAAAATGCCCTTTTCAT
* * *
11954576 TATATGAAAAAAAATTGACAT
1 TATATGATAAGAAATTAACAT
11954597 GTGGCTAAAT
Statistics
Matches: 400, Mismatches: 111, Indels: 43
0.72 0.20 0.08
Matches are distributed among these distances:
123 1 0.00
124 11 0.03
125 54 0.14
126 17 0.04
127 109 0.27
128 21 0.05
129 43 0.11
130 78 0.19
131 66 0.17
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (130 bp):
TATATGATAAGAAATTAACATACGACCAAATAGACTATTATACATTCATATAAAAATTACAAAAA
AACCACTACTTTTATAATTATTTACTAAAAAATCCCTTATAAAATTACCAAAATGCCCTTTTCAT
Found at i:11954615 original size:130 final size:130
Alignment explanation
Indices: 11953934--11955581 Score: 1152
Period size: 130 Copynumber: 12.9 Consensus size: 130
11953924 AATATTTTAA
* * * * *
11953934 TATATGATAAGAGATTGACATGTGGCCAAGTTGACTATTATGCCTTCATATAATAATTATGAAAA
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATATCATAATTACGAAAA
* * * * * **
11953999 TACCCATTTCTTTTACAATTATTTGCTAAATAATCTCTTATAAAATTACCAAAATACCCTACCCA
66 TA-CCACTTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTTCCA
*
11954064 A
130 T
* * * * *
11954065 TATATGATAAGAAATTAACATGCGACCAAATGGACTATAATGCCTTCATACCATAATTACG-AAA
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATATCATAATTACGAAAA
* * * * * ** *
11954129 T--TACTCCTATTATAATTATTTATTAAATAATCCCATATGAAATTACCAAAATACTTTTTCTAT
66 TACCACTTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTTCCAT
* * * * * * * * ** *
11954192 TATATGATAGGAAGTTAACTTGTGGCTAAATAGACTATTATGCCCTCATAACATAAGCATG-AAA
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATATCATAATTACGAAAA
* * * * * * * * *
11954256 -A-CAATTGTTCTCTTATTATTTACTAAAT-AT-CATTATGGAATTACCAAAATGCCCTTTTCAT
66 TACCACTTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTTCCAT
* * * * *
11954317 TATATGATAATAAATTGACATGTGGGCAAATAGACT-TTTTGCCCTT-ATATGATAATTACGAAA
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATG-CCTTCATATCATAATTACGAAA
* * * * * * *
11954380 ATATCACTACTTTTATAATTATTCT-CTAAAAAATCCCTTA-AAAATTACCAAATTGCCCTTTTT
65 ATACCACTTCTTTTATAATTATT-TACTAAATAATCCCTTATGAAATTACCAAAATACCC-TTTC
11954443 CAT
128 CAT
* * ** * * * * * * **
11954446 TATATGATTAGAAATTAACATACGACCAAATTGACTATTATACATTCATATAAAAATTATAAAAA
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATATCATAATTACGAAAA
* * * *
11954511 AACCCCTTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTAGCAAAATGCCCTTTCCAT
66 TACCACTTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTTCCAT
* * * * * * * *
11954576 TATATGAAAAAAAATTGACATGTGGCTAAATGGAATATTATACCCTCATACCATAATTACAAAAA
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATATCATAATTACGAAAA
* * * * * *
11954641 TACC-CATTCTCTTAT--TTA--T--TAAATAATCCCCTATTAAATTACCAACATACCATATCCA
66 TACCAC-TTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTTCCA
11954699 T
130 T
** *
11954700 TATATGATAAG--A---A-A-----CCAAATAAACTATTATGCCTTCATATCATAATTACAAAAA
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATATCATAATTACGAAAA
* * *** * * * * *
11954754 TGCCATTTCCCATATAATCATTTACTAAATAAT-CCTCTATAAAATTACCAAAATAACTTTTCTA
66 TACCACTTCTTTTATAATTATTTACTAAATAATCCCT-TATGAAATTACCAAAATACCCTTTCCA
11954818 T
130 T
* * * * * * * *
11954819 TATATAATAAGAAATTAATATGTGGCGATAA-GGACTATTTTGCCTACATACCATAATTATGAAA
1 TATATGATAAGAAATTGACATGTGGCCA-AATGGACTATTATGCCTTCATATCATAATTACGAAA
* * * * * * * *
11954883 ATA-CA-TTTTTCTTATAATTATTTACCAAATAATCTCATATGAAATTACTAAAATGCCATTTAC
65 ATACCACTTCTT-TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTTCC
11954946 AT
129 AT
* * * * *
11954948 TATACGATAAGAAATTGATATGTGGCCAAATGGACTATTATG-CTCTCATATAATAACTATGAAA
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCT-TCATATCATAATTACGAAA
* * * * * *
11955012 ATACTACTT-TTTTATAATTATTTTCTAAATAATCCCCTAAGAAATTA-AAAAATACCCTTTTCA
65 ATACCACTTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTTCCA
11955075 T
130 T
* * * * * *
11955076 TATATGATAAAAAATTGACATGTGGCCAAATGTA-TCGTTATGCCATCATATCTTAATTACGAAG
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACT-ATTATGCCTTCATATCATAATTACGAAA
* ** * * * * * * *
11955140 GTACCTTTTCTTTTATAATTGTTTACTAAGTAAACCCCTATTAAA--ATCAAAATACCATTTCCA
65 ATACCACTTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTTCCA
11955203 T
130 T
* * * * * * *
11955204 TTTATGATAAGAAATTGACATGTTGCAAAATAGACTATTATGCCCTCATACCATAATTATGAAAA
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATATCATAATTACGAAAA
* * * * * *
11955269 TACCTCTTGTCTTATAATTAATTACTAAATAATCTCTTATAAAATTACCAAAATACCCTTTTCCA
66 TACCACTTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCC-TTTCCA
11955334 T
130 T
* * * ** * * *
11955335 TATGTGTTAAGATATTGACATGTTTCCAAATGGACTATTATCCCATT-ATATCATAATTAAGAGA
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCC-TTCATATCATAATTACGAAA
* * *** * **
11955399 ATACTC-CTTCTCTTATAATTA-TTACTATATAATTTTTTATTAAATTATTAAAATACCCTTTTC
65 ATAC-CACTTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCC-TTTC
*
11955462 TAT
128 CAT
* * * ** * * * * *
11955465 TATATGATTAGAAGTTGACATGCGATCAAATGGACTATCATGCCCTCTTACCATAATTACGACAA
1 TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATATCATAATTACGAAAA
* * * * *
11955530 TACC-CTTTCTCTTATAATTATTTACCAAATAATCTCATATGAAATTATCAAA
66 TACCAC-TTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAA
11955582 CTATCATTTC
Statistics
Matches: 1177, Mismatches: 287, Indels: 106
0.75 0.18 0.07
Matches are distributed among these distances:
113 43 0.04
115 2 0.00
117 1 0.00
118 3 0.00
119 41 0.03
121 1 0.00
122 1 0.00
124 56 0.05
125 59 0.05
126 4 0.00
127 135 0.11
128 192 0.16
129 203 0.17
130 265 0.23
131 169 0.14
132 2 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (130 bp):
TATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATATCATAATTACGAAAA
TACCACTTCTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTTCCAT
Found at i:11955009 original size:129 final size:129
Alignment explanation
Indices: 11954722--11955590 Score: 682
Period size: 128 Copynumber: 6.7 Consensus size: 129
11954712 AACCAAATAA
* * ** * ** * *
11954722 ACTATTATGCCTTCATATCATAATTACAAAAATGCCATTTCCCATATAATCATTTACTAAATAAT
1 ACTATTATGCCCTCATACCATAATTATGAAAATACC-TTTTTCTTATAATTATTTACTAAATAAT
* * * * * *
11954787 CCTC-TATAAAATTACCAAAATAAC-TTTTCTATTATATAATAAGAAATTAATATGTGGCGATAA
65 -CTCATATGAAATTACCAAAATACCATTTTC-ATTATATGATAAGAAATTGACATGTGGCCA-AA
11954850 -GG
127 TGG
* * *
11954852 ACTATTTTG-CCTACATACCATAATTATGAAAATACATTTTTCTTATAATTATTTACCAAATAAT
1 ACTATTATGCCCT-CATACCATAATTATGAAAATACCTTTTTCTTATAATTATTTACTAAATAAT
* * * * *
11954916 CTCATATGAAATTACTAAAATGCCATTTACATTATACGATAAGAAATTGATATGTGGCCAAATGG
65 CTCATATGAAATTACCAAAATACCATTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGG
* ** * *
11954981 ACTATTATGCTCTCATATAATAACTATGAAAATA-CTACTTTT-TTATAATTATTTTCTAAATAA
1 ACTATTATGCCCTCATACCATAATTATGAAAATACCT--TTTTCTTATAATTATTTACTAAATAA
* * * * * *
11955044 TCCCCTAAGAAATTA-AAAAATACCCTTTTCATTATATGATAAAAAATTGACATGTGGCCAAATG
64 TCTCATATGAAATTACCAAAATACCATTTTCATTATATGATAAGAAATTGACATGTGGCCAAATG
*
11955108 T
129 G
* * * * * ** * * *
11955109 A-TCGTTATGCCATCATATCTTAATTACGAAGGTACCTTTTCTTTTATAATTGTTTACTAAGTAA
1 ACT-ATTATGCCCTCATACCATAATTATGAAAATACCTTTT-TCTTATAATTATTTACTAAATAA
* * * * * * * * * *
11955173 ACCCCTATTAAA--ATCAAAATACCATTTCCATTTTATGATAAGAAATTGACATGTTGCAAAATA
64 TCTCATATGAAATTACCAAAATACCATTTTCATTATATGATAAGAAATTGACATGTGGCCAAATG
11955236 G
129 G
* *
11955237 ACTATTATGCCCTCATACCATAATTATGAAAATACCTCTTGTCTTATAATTAATTACTAAATAAT
1 ACTATTATGCCCTCATACCATAATTATGAAAATACCT-TTTTCTTATAATTATTTACTAAATAAT
* * * * * * **
11955302 CTCTTATAAAATTACCAAAATACCCTTTTCCATTATGTGTTAAGATATTGACATGTTTCCAAATG
65 CTCATATGAAATTACCAAAATACCATTTT-CATTATATGATAAGAAATTGACATGTGGCCAAATG
11955367 G
129 G
* * * * * * *
11955368 ACTATTAT-CCCATTATATCATAATTAAGAGAATACTCCTTCTCTTATAATTA-TTACTATATAA
1 ACTATTATGCCC-TCATACCATAATTATGAAAATAC-CTTTTTCTTATAATTATTTACTAAATAA
* ** * ** * * * * **
11955431 TTTTTTATTAAATTATTAAAATACCCTTTTCTATTATATGATTAGAAGTTGACATGCGATCAAAT
64 TCTCATATGAAATTACCAAAATACCATTTTC-ATTATATGATAAGAAATTGACATGTGGCCAAAT
11955496 GG
128 GG
* * * * * *
11955498 ACTATCATGCCCTCTTACCATAATTACGACAATACCCTTTCTCTTATAATTATTTACCAAATAAT
1 ACTATTATGCCCTCATACCATAATTATGAAAATA-CCTTTTTCTTATAATTATTTACTAAATAAT
* * *
11955563 CTCATATGAAATTATCAAACTATCATTT
65 CTCATATGAAATTACCAAAATACCATTT
11955591 CCAATAATAA
Statistics
Matches: 588, Mismatches: 128, Indels: 45
0.77 0.17 0.06
Matches are distributed among these distances:
127 5 0.01
128 168 0.29
129 159 0.27
130 152 0.26
131 103 0.18
132 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.38
Consensus pattern (129 bp):
ACTATTATGCCCTCATACCATAATTATGAAAATACCTTTTTCTTATAATTATTTACTAAATAATC
TCATATGAAATTACCAAAATACCATTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGG
Found at i:11956102 original size:129 final size:129
Alignment explanation
Indices: 11955728--11957047 Score: 931
Period size: 129 Copynumber: 10.3 Consensus size: 129
11955718 ACATCATTTC
* * * ** * * * *
11955728 TAATTTTTTACTAAATAATCCCCTAA-AATATTACCAAAATATTCGTTCCATTAAATGATGAGAA
1 TAATTATTTACTAAATAATCCCTTAAGAA-ATTACTAAAATACCCTTTCAATTATATGATAAGAA
** * * ** *
11955792 ATTGACATACGGCCAAATTGACTATTATGCACTCATATCATAATTATGAAAATACTCCTTT-TTT
65 ATTGACATGTGGCCAAATGGACTATTACGC-CTCATATCATAATTACAAAAATAC-CCTTTCTCT
11955856 TA
128 TA
* * * *
11955858 TAATTATTTACTAAATAATCCC-TATGAAAGTAC---CAT----TTTC-ATTATATTATAAGAAA
1 TAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACCCTTTCAATTATATGATAAGAAA
* * * * * * *
11955914 TTAACATGTGGTCAAATGGACTATTATGCCTTTATATCATAATTTCAAAAATGCCCTTTCTCGTA
66 TTGACATGTGGCCAAATGGACTATTACGCC-TCATATCATAATTACAAAAATACCCTTTCTCTTA
* ** * ** * *
11955979 TATTTATTTACTAAATAATCTTTTATGAAATTA-TCAAAATACCCTTTCAAGAAAAAGATAAGAA
1 TAATTATTTACTAAATAATCCCTTAAGAAATTACT-AAAATACCCTTTCAATTATATGATAAGAA
* *
11956043 ATTGACATGTGGCCAAATGGACTGTTACGCCTCACATCATAATTACAAAAATACCCTTTCTCTTA
65 ATTGACATGTGGCCAAATGGACTATTACGCCTCATATCATAATTACAAAAATACCCTTTCTCTTA
* * * * *
11956108 TAATTATTTATTAAATAATCCCTCAAGAAATTACTAAAATACCTTTTCTAGTAT-TGATAAGAAA
1 TAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACCCTTTCAATTATATGATAAGAAA
* * * * **
11956172 TTGACATGTGGTCAAATGGACTATTATC-CCTTTATACCATAATTACCAAAATA-TTTCTTCTCT
66 TTGACATGTGGCCAAATGGACTATTA-CGCC-TCATATCATAATTACAAAAATACCCT-TTCTCT
11956235 TA
128 TA
* * * * * *
11956237 TAATAATTTAGTAAATAAT-CTTATAAGAAATTACTAAAATACCTTTTCCATTATATGATAATAA
1 TAATTATTTACTAAATAATCCCT-TAAGAAATTACTAAAATACCCTTTCAATTATATGATAAGAA
* ** ** * * * *
11956301 ATTGACATGTGGGCATTTTAACTATTACGCCCTCATA-CTATAATTA-TAAACTACCCTTTTTCC
65 ATTGACATGTGGCCAAATGGACTATTACG-CCTCATATC-ATAATTACAAAAATACCCTTTCTCT
11956364 TA
128 TA
* * *
11956366 TAATTATTT-CTTATATAATCCCTTAAGAAATTACTAAAATGCCTTTTGC-ATTATATGATAAGA
1 TAATTATTTAC-TAAATAATCCCTTAAGAAATTACTAAAATACCCTTT-CAATTATATGATAAGA
* * * * * *
11956429 AATTTACATG-CGCCTAAATGGACTATTATTC-CCTCATACCATAATTACGAAAATGCCAC-ATC
64 AATTGACATGTGGCC-AAATGGACTATTA--CGCCTCATATCATAATTACAAAAATACC-CTTTC
11956491 T-TT-
125 TCTTA
* * ** * *
11956494 T-A-TACTTACTAAATAATCCATTATCAAATTACCAAAATACCCTTTAAATTATATGATAAGAAA
1 TAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACCCTTTCAATTATATGATAAGAAA
* * * * ** * * *
11956557 TTGATATGT-GCCAAATGGACTATTATGCTTTCATACCATAA-TAGTGAAAATGCTC-TACTCTT
66 TTGACATGTGGCCAAATGGACTATTACGC-CTCATATCATAATTA-CAAAAATACCCTTTCTCTT
11956619 A
129 A
* * *
11956620 TAATTATTTACTAAATAATCCCTTAAGAAATTACTATAATGCCCTTTCCATTATATGATAAGAAA
1 TAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACCCTTTCAATTATATGATAAGAAA
* ** * * *
11956685 TTTACATGTGGCCAAATTAACTAGTACGCCCTCATATCATAATTA-AGAAAGTACCCATTCTCTT
66 TTGACATGTGGCCAAATGGACTATTACG-CCTCATATCATAATTACA-AAAATACCCTTTCTCTT
11956749 A
129 A
* * * * *
11956750 TAATTATTTACTAAATAAT-CCTTATGAAATTACCAAAATA-CCTTTTACATTACATGATAAAAA
1 TAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACCCTTTCA-ATTATATGATAAGAA
* * * ** * *
11956813 ATTCACATGTGGTCAAATAGACTATTATTCTCTCATATTATAATTACGAAAAAAACTCCTTT-TC
65 ATTGACATGTGGCCAAATGGACTATTACGC-CTCATATCATAATTAC-AAAAATAC-CCTTTCTC
11956877 TTA
127 TTA
* * ** ** *
11956880 TAATTA-GTACTAAATAATCCATTATTAAATTACCGAAATACCATTTTC-ATTATATGATAAGAA
1 TAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACC-CTTTCAATTATATGATAAGAA
* * * * * * * * * *
11956943 GTTGACATGTGGCAAAATAGAC--TTACACTCTCATACCATTATTTCGAAAAGGT-CTC-ATCTC
65 ATTGACATGTGGCCAAATGGACTATTACGC-CTCATATCATAATTAC-AAAA-ATACCCTTTCTC
11957004 TTA
127 TTA
* * *
11957007 TAATTATTTACTAAACAATCACC-TATGAAATTACCAAAATA
1 TAATTATTTACTAAATAATC-CCTTAAGAAATTACTAAAATA
11957048 TCGTTTTCGT
Statistics
Matches: 950, Mismatches: 181, Indels: 120
0.76 0.14 0.10
Matches are distributed among these distances:
120 6 0.01
121 77 0.08
122 12 0.01
124 6 0.01
125 36 0.04
126 62 0.07
127 15 0.02
128 156 0.16
129 358 0.38
130 209 0.22
131 10 0.01
132 3 0.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.36
Consensus pattern (129 bp):
TAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACCCTTTCAATTATATGATAAGAAA
TTGACATGTGGCCAAATGGACTATTACGCCTCATATCATAATTACAAAAATACCCTTTCTCTTA
Found at i:11956207 original size:258 final size:257
Alignment explanation
Indices: 11955757--11957047 Score: 1078
Period size: 258 Copynumber: 5.0 Consensus size: 257
11955747 CCCCTAAAAT
** * * * * ** *
11955757 ATTACCAAAATATTCGTTCCATTAAATGATGAGAAATTGACATACGGCCAAATTGACTATTATGC
1 ATTACCAAAATACCCTTTCAATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGC
* ** * *
11955822 ACTCATATCATAATTATGAAAATACTCCTTTTTTTATAATTATTTACTAAATAATCCC-TATGAA
66 TCTCATATCATAATTACAAAAATAC-CCTTTTCTTATAATTATTTACTAAATAATCCCTTAAGAA
* * * * * *
11955886 AGTAC-------CATTTTCATTATATTATAAGAAATTAACATGTGGTCAAATGGACTATTATGCC
130 ATTACTAAAATACCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATCCC
* * * *
11955944 TTTATATCATAATTTCAAAAATGCCCTTTCTCGTATATTTATTTACTAAATAATCTTTTATGAA
195 TTCATACCATAATTTCAAAAATGCCC-TTCTCTTATAATTATTTACTAAATAATCTTTTATGAA
* ** * * * *
11956008 ATTATCAAAATACCCTTTCAAGAAAAAGATAAGAAATTGACATGTGGCCAAATGGACTGTTACGC
1 ATTACCAAAATACCCTTTCAATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGC
* * *
11956073 -CTCACATCATAATTACAAAAATACCCTTTCTCTTATAATTATTTATTAAATAATCCCTCAAGAA
66 TCTCATATCATAATTACAAAAATACCCTTT-TCTTATAATTATTTACTAAATAATCCCTTAAGAA
* *
11956137 ATTACTAAAATACCTTTTCTAGTAT-TGATAAGAAATTGACATGTGGTCAAATGGACTATTATCC
130 ATTACTAAAATACCTTTTC-ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATCC
* * ** * * * *
11956201 CTTTATACCATAATTACCAAAATAT-TTCTTCTCTTATAATAATTTAGTAAATAATCTTATAAGA
194 CTTCATACCATAATT-TCAAAA-ATGCCCTTCTCTTATAATTATTTACTAAATAATCTTTTATGA
11956265 A
257 A
* * * * * ** ** *
11956266 ATTACTAAAATACCTTTTCCATTATATGATAATAAATTGACATGTGGGCATTTTAACTATTACGC
1 ATTACCAAAATACCCTTTCAATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGC
* * * * *
11956331 CCTCATA-CTATAATTA-TAAACTACCCTTTTTCCTATAATTATTT-CTTATATAATCCCTTAAG
66 TCTCATATC-ATAATTACAAAAATACCC-TTTTCTTATAATTATTTAC-TAAATAATCCCTTAAG
* * *
11956393 AAATTACTAAAATGCCTTTTGCATTATATGATAAGAAATTTACATG-CGCCTAAATGGACTATTA
128 AAATTACTAAAATACCTTTT-CATTATATGATAAGAAATTGACATGTGGCC-AAATGGACTATTA
* * * * **
11956457 TTCCC-TCATACCATAATTACGAAAATGCCACATCT-TT-T-A-TACTTACTAAATAATCCATTA
191 -TCCCTTCATACCATAATTTCAAAAATGCC-CTTCTCTTATAATTATTTACTAAATAATCTTTTA
*
11956517 TCAA
254 TGAA
* *
11956521 ATTACCAAAATACCCTTTAAATTATATGATAAGAAATTGATATGT-GCCAAATGGACTATTATGC
1 ATTACCAAAATACCCTTTCAATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGC
* * ** * * **
11956585 TTTCATACCATAA-TAGTGAAAATGCTCTACTCTTATAATTATTTACTAAATAATCCCTTAAGAA
66 TCTCATATCATAATTA-CAAAAATACCCTTTTCTTATAATTATTTACTAAATAATCCCTTAAGAA
* * * * ** *
11956649 ATTACTATAATGCCCTTTCCATTATATGATAAGAAATTTACATGTGGCCAAATTAACTAGTA-CG
130 ATTACTAAAAT-ACCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATC-
* * * *
11956713 CCCTCATATCATAA-TT-AAGAAAGTACCCATTCTCTTATAATTATTTACTAAATAATC-CTTAT
193 CCTTCATACCATAATTTCAA-AAA-TGCCC-TTCTCTTATAATTATTTACTAAATAATCTTTTAT
11956775 GAA
255 GAA
* * * * * * *
11956778 ATTACCAAAATA-CCTTTTACATTACATGATAAAAAATTCACATGTGGTCAAATAGACTATTATT
1 ATTACCAAAATACCCTTTCA-ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATG
* * * * **
11956842 CTCTCATATTATAATTACGAAAAAAACTCCTTTTCTTATAATTA-GTACTAAATAATCCATTATT
65 CTCTCATATCATAATTAC-AAAAATAC-CCTTTTCTTATAATTATTTACTAAATAATCCCTTAAG
** * * *
11956906 AAATTACCGAAATACCATTTTCATTATATGATAAGAAGTTGACATGTGGCAAAATAGAC--TTA-
128 AAATTACTAAAATACC-TTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTAT
* * * * * * * ***
11956968 CACTCTCATACCATTATTTCGAAAAGGTCTCATCTCTTATAATTATTTACTAAACAATCACCTAT
192 CCCT-TCATACCATAATTTCAAAAATG-CCCTTCTCTTATAATTATTTACTAAATAATCTTTTAT
11957033 GAA
255 GAA
11957036 ATTACCAAAATA
1 ATTACCAAAATA
11957048 TCGTTTTCGT
Statistics
Matches: 833, Mismatches: 159, Indels: 89
0.77 0.15 0.08
Matches are distributed among these distances:
249 5 0.01
250 46 0.06
251 59 0.07
252 2 0.00
253 9 0.01
254 114 0.14
255 74 0.09
256 9 0.01
257 81 0.10
258 273 0.33
259 142 0.17
260 19 0.02
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.36
Consensus pattern (257 bp):
ATTACCAAAATACCCTTTCAATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGC
TCTCATATCATAATTACAAAAATACCCTTTTCTTATAATTATTTACTAAATAATCCCTTAAGAAA
TTACTAAAATACCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATCCCT
TCATACCATAATTTCAAAAATGCCCTTCTCTTATAATTATTTACTAAATAATCTTTTATGAA
Found at i:11956694 original size:383 final size:386
Alignment explanation
Indices: 11955777--11957047 Score: 1004
Period size: 383 Copynumber: 3.3 Consensus size: 386
11955767 TATTCGTTCC
* * ** * * ** *
11955777 ATTAAATGATGAGAAATTGACATACGGCCAAATTGACTATTATGCACTCATATCATAATTATGAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATACTTTCATACCATAA-TATGAA
* ** * * * *
11955842 AATACTCCTTTTTTTATAATTATTTACTAAATAATCCC-TATGAAAGTAC---CAT----TTT-C
65 AATGCT-CTACTCTTATAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACCCTTTCC
* * * ** * * * *
11955898 ATTATATTATAAGAAATTAACATGTGGTCAAATGGACTATTATGCCTTTATATCATAATTTCAA-
129 ATTATATGATAAGAAATTGACATGTGGCCAAATTAACTAGTACGCCCTCATATCATAA-TT-AAG
* * * * * * * *
11955962 AAA-TGCCCTTTCTCGTATATTTATTTACTAAATAATCTTTTATGAAATTATCAAAATACCCTTT
192 AAACTACCCATTCTCCTATAATTATTTACTAAATAATC-CTTAAGAAATTACCAAAATACCTTTT
** * * * * * * * * *
11956026 -CAAGAAAAAGATAAGAAATTGACATGTGGC-CAAATGGACTGTTA--CGCCTCACATCATAATT
256 AC-ATTACATGATAAAAAATTCACATG-CGCTCAAATAGACTATTATTC-CCTCATACCATAATT
* * * * * * * ** *
11956087 AC-AAAAATAC-CCTTTCTCTTATAATTATTTATTAAATAATCCCTCAAGAAATTACTAAAATAC
318 ACGAAAAAAACACATCT-TCTTATAACTA--TACTAAATAATCCATTATCAAATTACCAAAATAC
* **
11956150 CTTTTCT
380 CATTTAA
* * * **
11956157 AGTAT-TGATAAGAAATTGACATGTGGTCAAATGGACTATTATCCCTTT-ATACCATAATTACCA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTAT-ACTTTCATACCATAA-TATGA
** * * * * *
11956220 AAATATTTCTTCTCTTATAATAATTTAGTAAATAAT-CTTATAAGAAATTACTAAAATACCTTTT
64 AAAT-GCTCTACTCTTATAATTATTTACTAAATAATCCCT-TAAGAAATTACTAAAATACCCTTT
* * ** *
11956284 CCATTATATGATAATAAATTGACATGTGGGCATTTTAACTATTACGCCCTCATA-CTATAATT-A
127 CCATTATATGATAAGAAATTGACATGTGGCCAAATTAACTAGTACGCCCTCATATC-ATAATTAA
* * * * * *
11956347 TAAACTACCCTTTTTCCTATAATTATTT-CTTATATAATCCCTTAAGAAATTACTAAAATGCCTT
191 GAAACTACCCATTCTCCTATAATTATTTAC-TAAATAAT-CCTTAAGAAATTACCAAAATACCTT
* * * * *
11956411 TTGCATTATATGATAAGAAATTTACATGCGC-CTAAATGGACTATTATTCCCTCATACCATAATT
254 TTACATTACATGATAAAAAATTCACATGCGCTC-AAATAGACTATTATTCCCTCATACCATAATT
*** *
11956475 ACGAAAATGCCACATCTT-TTAT-ACT-TACTAAATAATCCATTATCAAATTACCAAAATACCCT
318 ACGAAAAAAACACATCTTCTTATAACTATACTAAATAATCCATTATCAAATTACCAAAATACCAT
11956537 TTAA
383 TTAA
* *
11956541 ATTATATGATAAGAAATTGATATGT-GCCAAATGGACTATTATGCTTTCATACCATAATAGTGAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATACTTTCATACCATAATA-TGAA
* *
11956605 AATGCTCTACTCTTATAATTATTTACTAAATAATCCCTTAAGAAATTACTATAATGCCCTTTCCA
65 AATGCTCTACTCTTATAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACCCTTTCCA
*
11956670 TTATATGATAAGAAATTTACATGTGGCCAAATTAACTAGTACGCCCTCATATCATAATTAAGAAA
130 TTATATGATAAGAAATTGACATGTGGCCAAATTAACTAGTACGCCCTCATATCATAATTAAGAAA
* * *
11956735 GTACCCATTCTCTTATAATTATTTACTAAATAATCCTTATGAAATTACCAAAATACCTTTTACAT
195 CTACCCATTCTCCTATAATTATTTACTAAATAATCCTTAAGAAATTACCAAAATACCTTTTACAT
* * * **
11956800 TACATGATAAAAAATTCACATGTGGTCAAATAGACTATTATTCTCTCATATTATAATTACGAAAA
260 TACATGATAAAAAATTCACATGCGCTCAAATAGACTATTATTCCCTCATACCATAATTACGAAAA
* * * * * * **
11956865 AAACTCCTTTTCTTATAATTAGTACTAAATAATCCATTATTAAATTACCGAAATACCATTTTC
325 AAACACATCTTCTTATAACTA-TACTAAATAATCCATTATCAAATTACCAAAATACCATTTAA
* * * * * * *
11956928 ATTATATGATAAGAAGTTGACATGTGGCAAAATAGAC--TTACACTCTCATACCATTATTTCGAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATACTTTCATACCATAATAT-GAA
* * * *
11956991 AA-GGTCTCATCTCTTATAATTATTTACTAAACAATCACC-TATGAAATTACCAAAATA
65 AATGCTCT-A-CTCTTATAATTATTTACTAAATAATC-CCTTAAGAAATTACTAAAATA
11957048 TCGTTTTCGT
Statistics
Matches: 715, Mismatches: 136, Indels: 73
0.77 0.15 0.08
Matches are distributed among these distances:
378 1 0.00
379 72 0.10
380 15 0.02
383 195 0.27
384 105 0.15
385 27 0.04
386 29 0.04
387 183 0.26
388 78 0.11
389 7 0.01
390 3 0.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.36
Consensus pattern (386 bp):
ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATACTTTCATACCATAATATGAAA
ATGCTCTACTCTTATAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACCCTTTCCAT
TATATGATAAGAAATTGACATGTGGCCAAATTAACTAGTACGCCCTCATATCATAATTAAGAAAC
TACCCATTCTCCTATAATTATTTACTAAATAATCCTTAAGAAATTACCAAAATACCTTTTACATT
ACATGATAAAAAATTCACATGCGCTCAAATAGACTATTATTCCCTCATACCATAATTACGAAAAA
AACACATCTTCTTATAACTATACTAAATAATCCATTATCAAATTACCAAAATACCATTTAA
Found at i:11956912 original size:513 final size:512
Alignment explanation
Indices: 11955888--11956951 Score: 1144
Period size: 513 Copynumber: 2.1 Consensus size: 512
11955878 CCTATGAAAG
* * * * * * * *
11955888 TACCATTTTCATTATATTATAAGAAATTAACATGTG-GTCAAATGGACTATTATGCCTTTATATC
1 TACCATTTTCATTATATGATAAGAAATTGACATGCGCCT-AAATGGACTATTATTCCCTCATACC
* * * * * ** * *
11955952 ATAATTTCAAAAATGCC-CTTTCTCGTATATTTATTTACTAAATAATCTTTTATGAAATTATCAA
65 ATAATTACGAAAATGCCAC-ATCT--T-T-TATACTTACTAAATAATCCATTATCAAATTACCAA
* * *
11956016 AATACCCTTTCAAGAAAAAGATAAGAAATTGACATGTGGCCAAATGGACTGTTACGCCTCACATC
125 AATACCCTTTAAAGAAAAAGATAAGAAATTGACATGTGGCCAAATGGACTATTACGCCTCACACC
* *
11956081 ATAATTACAAAAATACCCTTTCTCTTATAATTATTTATTAAATAATCCCTCAAGAAATTACTAAA
190 ATAATTACAAAAATACCCTTACTCTTATAATTATTTACTAAATAATCCCTCAAGAAATTACTAAA
* * * * * * *
11956146 ATACCTTTTCTAGTATTGATAAGAAATTGACATGTGGTCAAATGGACTATTATCCCTTTATACCA
255 ATACCCTTTCCAGTATTGATAAGAAATTGACATGTGGCCAAATGAACTAGTATCCCCTCATACCA
* ** * *
11956211 TAATTACCAAAATATTTCTTCTCTTATAATAATTTAGTAAATAATCTTATAAGAAATTACTAAAA
320 TAATTAACAAAATATCCCTTCTCTTATAATAATTTACTAAATAATCTTAT-AGAAATTACCAAAA
* * * * **
11956276 TACCTTTTCCATTATATGATAATAAATTGACATGTGGGCATTTTAACTATTACGCCCTCATACTA
384 TACCTTTTACATTACATGATAAAAAATTCACATGTGGGCATAATAACTATTACGCCCTCATACTA
* ** * * * * *
11956341 TAATTATAAACTACCCTTTTTCCTATAATTATTTCTTATATAATCCCTTAAGAAATTACTAAAA
449 TAATTAAAAAAAACCCTTTTTCCTATAATTAGTACTTAAATAATCCATTAAGAAATTACCAAAA
* *
11956405 TGCC-TTTTGCATTATATGATAAGAAATTTACATGCGCCTAAATGGACTATTATTCCCTCATACC
1 TACCATTTT-CATTATATGATAAGAAATTGACATGCGCCTAAATGGACTATTATTCCCTCATACC
11956469 ATAATTACGAAAATGCCACATCTTTTATACTTACTAAATAATCCATTATCAAATTACCAAAATAC
65 ATAATTACGAAAATGCCACATCTTTTATACTTACTAAATAATCCATTATCAAATTACCAAAATAC
** * * * * * *
11956534 CCTTTAAATTATATGATAAGAAATTGATATGT-GCCAAATGGACTATTATGCTTTCATACCATAA
130 CCTTTAAAGAAAAAGATAAGAAATTGACATGTGGCCAAATGGACTATTACGC-CTCACACCATAA
** * * * * *
11956598 -TAGTGAAAATGCTC-TACTCTTATAATTATTTACTAAATAATCCCTTAAGAAATTACTATAATG
194 TTA-CAAAAATACCCTTACTCTTATAATTATTTACTAAATAATCCCTCAAGAAATTACTAAAATA
* * * *
11956661 CCCTTTCCATTATATGATAAGAAATTTACATGTGGCCAAATTAACTAGTA-CGCCCTCATATCAT
258 CCCTTTCCAGTAT-TGATAAGAAATTGACATGTGGCCAAATGAACTAGTATC-CCCTCATACCAT
* * *
11956725 AATTAAGAAAGTA-CCCATTCTCTTATAATTATTTACTAAATAATCCTTAT-GAAATTACCAAAA
321 AATTAACAAAATATCCC-TTCTCTTATAATAATTTACTAAATAAT-CTTATAGAAATTACCAAAA
* ** * *
11956788 TACCTTTTACATTACATGATAAAAAATTCACATGTGGTCA-AATAGACTATTATTCTCTCATATT
384 TACCTTTTACATTACATGATAAAAAATTCACATGTGGGCATAATA-ACTATTACGCCCTCATACT
* ** *
11956852 ATAATTACGAAAAAAACTCC-TTTTCTTATAATTAGTAC-TAAATAATCCATTATTAAATTACCG
448 ATAATTA--AAAAAAAC-CCTTTTTCCTATAATTAGTACTTAAATAATCCATTAAGAAATTACCA
11956915 AAA
510 AAA
*
11956918 TACCATTTTCATTATATGATAAGAAGTTGACATG
1 TACCATTTTCATTATATGATAAGAAATTGACATG
11956952 TGGCAAAATA
Statistics
Matches: 450, Mismatches: 83, Indels: 32
0.80 0.15 0.06
Matches are distributed among these distances:
511 2 0.00
512 144 0.32
513 199 0.44
514 30 0.07
515 3 0.01
516 4 0.01
517 66 0.15
518 2 0.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (512 bp):
TACCATTTTCATTATATGATAAGAAATTGACATGCGCCTAAATGGACTATTATTCCCTCATACCA
TAATTACGAAAATGCCACATCTTTTATACTTACTAAATAATCCATTATCAAATTACCAAAATACC
CTTTAAAGAAAAAGATAAGAAATTGACATGTGGCCAAATGGACTATTACGCCTCACACCATAATT
ACAAAAATACCCTTACTCTTATAATTATTTACTAAATAATCCCTCAAGAAATTACTAAAATACCC
TTTCCAGTATTGATAAGAAATTGACATGTGGCCAAATGAACTAGTATCCCCTCATACCATAATTA
ACAAAATATCCCTTCTCTTATAATAATTTACTAAATAATCTTATAGAAATTACCAAAATACCTTT
TACATTACATGATAAAAAATTCACATGTGGGCATAATAACTATTACGCCCTCATACTATAATTAA
AAAAAACCCTTTTTCCTATAATTAGTACTTAAATAATCCATTAAGAAATTACCAAAA
Found at i:11958249 original size:3 final size:3
Alignment explanation
Indices: 11958243--11958281 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
11958233 AAAAAAATAG
* *
11958243 TAT TAT TAT TAC TAT TGT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
11958282 GCATAAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:11960385 original size:143 final size:143
Alignment explanation
Indices: 11960161--11960566 Score: 468
Period size: 144 Copynumber: 2.8 Consensus size: 143
11960151 CATTTTTGGG
* * * * * *
11960161 ATTTTAAA-GCACAAAAAATCATGAAATATTATAAAATTAAAAT-TTGAAAAGTGC-GTGAAAAT
1 ATTTCAAATGCACAAAAAATCATGAAATATTATGAAATTGAGATCTAG-AAAGTTCTGTGAAAAT
*
11960223 CAAAGCTCGAAAAGACCAAATTAC-AAAATACCCCTAAATGGTATTTTGGTAATTTTACACCTCT
65 CAAAGCTCAAAAAGACCAAATTACAAAAATACCCCTAAA-GGTATTTTGGTAATTTTACACCTC-
11960287 TAGGG-TACTGCTATA
128 TAGGGTTACTGCTATA
11960302 ATTTCAAATGCACAAAAAATCATGAAATATTATGAAATTGAGATCTAGAAAGTTCTGTGAAAATT
1 ATTTCAAATGCACAAAAAATCATGAAATATTATGAAATTGAGATCTAGAAAGTTCTGTGAAAA-T
* *** * *
11960367 C-GAGCTCAAAAAGACCAAATTACAAAAATACTATTAAAGGATATTTTGATAATTTCACACCTCT
65 CAAAGCTCAAAAAGACCAAATTACAAAAATACCCCTAAAGG-TATTTTGGTAATTTTACACCTCT
* * *
11960431 CGGGTTATTGCTATG
129 AGGGTTACTGCTATA
* * *
11960446 ATTTCAAATGCACCAATAATCATGAAATATTATGAAATTGAGATCTCA-AAAGTT-TCATGAAAA
1 ATTTCAAATGCACAAAAAATCATGAAATATTATGAAATTGAGATCT-AGAAAGTTCT-GTGAAAA
* * * * *
11960509 TCTAAGCTCAAAAAGATCAAATTACAAAAATAGCCCTAAAGAGAATTTTAGTAATTTT
64 TCAAAGCTCAAAAAGACCAAATTACAAAAATACCCCTAAAG-GTATTTTGGTAATTTT
11960567 GTACTTTTTC
Statistics
Matches: 225, Mismatches: 29, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
141 7 0.03
142 38 0.17
143 38 0.17
144 140 0.62
145 2 0.01
ACGTcount: A:0.44, C:0.14, G:0.13, T:0.30
Consensus pattern (143 bp):
ATTTCAAATGCACAAAAAATCATGAAATATTATGAAATTGAGATCTAGAAAGTTCTGTGAAAATC
AAAGCTCAAAAAGACCAAATTACAAAAATACCCCTAAAGGTATTTTGGTAATTTTACACCTCTAG
GGTTACTGCTATA
Found at i:11961191 original size:34 final size:35
Alignment explanation
Indices: 11961098--11961256 Score: 135
Period size: 36 Copynumber: 4.5 Consensus size: 35
11961088 CTACAAGTTG
* *
11961098 AAAAAATAAAGATGATCAGGATAATAATGCAGGTA
1 AAAAAATAAAGATGATCAGGATAATATTGTAGGTA
* * * *
11961133 AAATAAATAAATATAAT-TGAGATAATATTGTAAGT-
1 AAA-AAATAAAGATGATCAG-GATAATATTGTAGGTA
* * *
11961168 AAAAAATAAATATGATCAGGATAACATCGTAGGTCA
1 AAAAAATAAAGATGATCAGGATAATATTGTAGGT-A
* * * *
11961204 AAAAAATAAAGATGACCAAGA-AGACATTATAGGTCA
1 AAAAAATAAAGATGATCAGGATA-ATATTGTAGGT-A
11961240 AAAAAATAAAGATGATC
1 AAAAAATAAAGATGATC
11961257 GGGACAACAC
Statistics
Matches: 101, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
34 24 0.24
35 9 0.09
36 68 0.67
ACGTcount: A:0.55, C:0.07, G:0.16, T:0.23
Consensus pattern (35 bp):
AAAAAATAAAGATGATCAGGATAATATTGTAGGTA
Found at i:11961321 original size:71 final size:71
Alignment explanation
Indices: 11961240--11961726 Score: 228
Period size: 71 Copynumber: 6.8 Consensus size: 71
11961230 TTATAGGTCA
* * * *
11961240 AAAAAATAAAGATGATCGGGACAACACCAATGGTCGG-GAGGTAAAGATGA-TAGAGACAAAACC
1 AAAAGATAAAGATGATCAGGACAACACCAATGGTCGGAAAGATAAAGATGACTAG-GACAAAACC
11961303 AACAATT
65 AACAATT
* * * **
11961310 GAAAAGATAAAGATGATTAGGACAACACCAATAGTTGGAAAGATAAAGATGACTAGGACATCACC
1 -AAAAGATAAAGATGATCAGGACAACACCAATGGTCGGAAAGATAAAGATGACTAGGACAAAACC
* *
11961375 AATAGTT
65 AACAATT
* ** * * * * *
11961382 AAGAAGATAAAGATGA-CTAGGACAACACTAATGGTTTGAAAAACAAATATGACTAGGACAACAT
1 AA-AAGATAAAGATGATC-AGGACAACACCAATGGTCGGAAAGATAAAGATGACTAGGACAAAAC
* *
11961446 C-GCATATC
64 CAACA-ATT
* * * * ** * * ** *
11961454 AAAAAATAAAGATGA-CTGAGACAATACCACA-AGTCAAAAAAATAATGATGACCGGGACAACAC
1 AAAAGATAAAGATGATCAG-GACAACACCA-ATGGTCGGAAAGATAAAGATGACTAGGACAAAAC
**
11961517 CAAC-GGT
64 CAACAATT
* * * ** * * * *
11961524 AAGGAGGTAAAGATGAT-AGAGACAACACCAATAGTTAAGAAAGATAATGATGACTACGATAACA
1 AA-AAGATAAAGATGATCAG-GACAACACCAAT-GGTCGGAAAGATAAAGATGACTAGGACAAAA
11961588 CCAACAATT
63 CCAACAATT
* * * * * * *
11961597 GAAAAGAT-AAGATGA-CTGAGACAATACCAACGGTTGGGAAGAT-AAGATGACTGGGACTACAA
1 -AAAAGATAAAGATGATCAG-GACAACACCAATGGTCGGAAAGATAAAGATGACTAGGAC-AAAA
** *
11961659 -CAATGATCG
63 CCAACAAT-T
* * * *
11961668 AAAAGATAAAGATCAT-TGAGACAACACCAACGGTCGGGAAGAT-AAGATGACTAGGACAA
1 AAAAGATAAAGATGATCAG-GACAACACCAATGGTCGGAAAGATAAAGATGACTAGGACAA
11961727 CCCCAATGAA
Statistics
Matches: 316, Mismatches: 81, Indels: 39
0.72 0.19 0.09
Matches are distributed among these distances:
70 27 0.09
71 154 0.49
72 126 0.40
73 7 0.02
74 2 0.01
ACGTcount: A:0.48, C:0.15, G:0.21, T:0.16
Consensus pattern (71 bp):
AAAAGATAAAGATGATCAGGACAACACCAATGGTCGGAAAGATAAAGATGACTAGGACAAAACCA
ACAATT
Found at i:11961326 original size:36 final size:36
Alignment explanation
Indices: 11961281--11961733 Score: 256
Period size: 36 Copynumber: 12.7 Consensus size: 36
11961271 GGTCGGGAGG
* * *
11961281 TAAAGATGA-TAGAGACAAAACCAACAATTGAAAAGA
1 TAAAGATGACTAG-GACAACACCAATAGTTGAAAAGA
* *
11961317 TAAAGATGATTAGGACAACACCAATAGTTGGAAAGA
1 TAAAGATGACTAGGACAACACCAATAGTTGAAAAGA
*
11961353 TAAAGATGACTAGGACATCACCAATAGTT-AAGAAGA
1 TAAAGATGACTAGGACAACACCAATAGTTGAA-AAGA
* *
11961389 TAAAGATGACTAGGACAACACTAATGGTTTGAAAA-A
1 TAAAGATGACTAGGACAACACCAATAG-TTGAAAAGA
* * * *
11961425 CAAATATGACTAGGACAACATCGC-ATA--TCAAAAAA
1 TAAAGATGACTAGGACAACA-C-CAATAGTTGAAAAGA
* ** *
11961460 TAAAGATGACT-GAGACAATACCACA-AGTCAAAAAAA
1 TAAAGATGACTAG-GACAACACCA-ATAGTTGAAAAGA
* ** * * * *
11961496 TAATGATGACCGGGACAACACCAA-CGGT-AAGGAGG
1 TAAAGATGACTAGGACAACACCAATAGTTGAA-AAGA
*
11961531 TAAAGATGA-TAGAGACAACACCAATAGTTAAGAAAGA
1 TAAAGATGACTAG-GACAACACCAATAGTTGA-AAAGA
* * * * *
11961568 TAATGATGACTACGATAACACCAACAATTGAAAAGA
1 TAAAGATGACTAGGACAACACCAATAGTTGAAAAGA
* ** **
11961604 T-AAGATGACT-GAGACAATACCAACGGTTGGGAAGA
1 TAAAGATGACTAG-GACAACACCAATAGTTGAAAAGA
* * * *
11961639 T-AAGATGACTGGGACTACAACAAT-GATCGAAAAGA
1 TAAAGATGACTAGGACAACACCAATAG-TTGAAAAGA
* * ** * **
11961674 TAAAGATCA-TTGAGACAACACCAACGGTCGGGAAGA
1 TAAAGATGACTAG-GACAACACCAATAGTTGAAAAGA
*
11961710 T-AAGATGACTAGGACAACCCCAAT
1 TAAAGATGACTAGGACAACACCAAT
11961734 GAAGATAAAA
Statistics
Matches: 323, Mismatches: 68, Indels: 53
0.73 0.15 0.12
Matches are distributed among these distances:
33 1 0.00
34 12 0.04
35 108 0.33
36 160 0.50
37 37 0.11
38 5 0.02
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (36 bp):
TAAAGATGACTAGGACAACACCAATAGTTGAAAAGA
Found at i:11961755 original size:29 final size:29
Alignment explanation
Indices: 11961705--11961763 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
11961695 CAACGGTCGG
* * *
11961705 GAAGATAAGATGACTAGGACAACCCCAAT
1 GAAGATAAAATGACTAGAACAACACCAAT
11961734 GAAGATAAAATGACT-GAAACAACACCAAT
1 GAAGATAAAATGACTAG-AACAACACCAAT
11961763 G
1 G
11961764 GTTAAGAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.49, C:0.19, G:0.19, T:0.14
Consensus pattern (29 bp):
GAAGATAAAATGACTAGAACAACACCAAT
Found at i:11968297 original size:11 final size:12
Alignment explanation
Indices: 11968276--11968304 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
11968266 TATATATATA
11968276 TAAA-TATTTTT
1 TAAATTATTTTT
11968287 TAAATTATTTTT
1 TAAATTATTTTT
11968299 TAAATT
1 TAAATT
11968305 TTATAATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TAAATTATTTTT
Found at i:11968321 original size:12 final size:13
Alignment explanation
Indices: 11968302--11968337 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
11968292 TATTTTTTAA
11968302 ATTT-TATA-ATT
1 ATTTATATATATT
11968313 ATTTATATATATT
1 ATTTATATATATT
11968326 -TTTATATATATT
1 ATTTATATATATT
11968338 TAATTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.17
12 16 0.70
13 3 0.13
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTTATATATATT
Found at i:11968326 original size:21 final size:19
Alignment explanation
Indices: 11968279--11968327 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
11968269 ATATATATAA
*
11968279 ATATTTTTTAAATTATTTT
1 ATATATTTTAAATTATTTT
* *
11968298 TTAAATTTTATAATTATTTAT
1 ATATATTTTA-AATTATTT-T
11968319 ATATATTTT
1 ATATATTTT
11968328 TATATATATT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 7 0.30
20 8 0.35
21 8 0.35
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
ATATATTTTAAATTATTTT
Found at i:11968335 original size:16 final size:16
Alignment explanation
Indices: 11968311--11968354 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
11968301 AATTTTATAA
* *
11968311 TTATTTATATATATTT
1 TTATATATATATAATT
*
11968327 TTATATATATTTAATT
1 TTATATATATATAATT
*
11968343 TTATATTTATAT
1 TTATATATATAT
11968355 TTAAAATAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTATATATATATAATT
Found at i:11968355 original size:18 final size:17
Alignment explanation
Indices: 11968311--11968358 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
11968301 AATTTTATAA
*
11968311 TTATTTATATAT-ATTT
1 TTATTTATATTTAATTT
*
11968327 TTATATATATTTAATTT
1 TTATTTATATTTAATTT
11968344 TATATTTATATTTAA
1 T-TATTTATATTTAA
11968359 AATAATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 10 0.37
17 5 0.19
18 12 0.44
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTTATATTTAATTT
Found at i:11970373 original size:27 final size:27
Alignment explanation
Indices: 11970343--11970395 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
11970333 TATATCATAA
* *
11970343 TTACGAAAAT-ATCCCTTTTATAATTAT
1 TTAC-AAAATAATCCCTTATAAAATTAT
*
11970370 TTACTAAATAATCCCTTATAAAATTA
1 TTACAAAATAATCCCTTATAAAATTA
11970396 CCAAAATACT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.42, C:0.15, G:0.02, T:0.42
Consensus pattern (27 bp):
TTACAAAATAATCCCTTATAAAATTAT
Found at i:11970677 original size:130 final size:129
Alignment explanation
Indices: 11970306--11970731 Score: 362
Period size: 129 Copynumber: 3.3 Consensus size: 129
11970296 AGAAATTGAG
* * * * * * **
11970306 ATGTGGCCAAATAGACTATTATGCCTTTATATCATAATTACGAAAATATC-CCT-T-TTATAATT
1 ATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTA-AAAAAAAACATTTATCTTATAATT
* * * * *
11970368 ATTTACTAAATAATCCCTT-ATAAAATTACCAAAATACTCTTTCCATTATACGATAAGAAATTAT
65 ATTTACTAAATAATCCCTTAATAAAATTACCAAAATACCCTTTCAATTATATGATAAGAGA-TAA
11970432 C
129 C
* * * * * * ** *
11970433 TTGTGGCCATATGGATTACTATGCCCTCATATAATAATTATGAAAATACATTTATCTTATAATTA
1 ATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTAAAAAAAAACATTTATCTTATAATTA
* ** * * ** * **
11970498 TTTACTAAATAATTCCC--AATGAAATTACCATTATTCCATTTTTATTATATGATTAGAGACGAC
66 TTTACTAAATAA-TCCCTTAATAAAATTACCAAAATACCCTTTCAATTATATGATAAGAGATAAC
* * * *
11970561 ATGTGGCCAAATTGACCATTATACTCTCATATCATAATTACAAAAAAAATCATTTTTCTTATAAT
1 ATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTA-AAAAAAAA-CATTTATCTTATAAT
* * * *
11970626 TATTTACTAAATAATCCCTTAAT-AAATTATCAAAATGCCCTTTCAACTATATGATAAGAAGTTA
64 TATTTACTAAATAATCCCTTAATAAAATTACCAAAATACCCTTTCAATTATATGATAAG-AGATA
11970690 AC
128 AC
** *
11970692 ATGTGATCAAATTGACTATTGTGCCCTCATATCATAATTA
1 ATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTA
11970732 TGAAAATATT
Statistics
Matches: 229, Mismatches: 60, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
126 4 0.02
127 33 0.14
128 33 0.14
129 60 0.26
130 58 0.25
131 41 0.18
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (129 bp):
ATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTAAAAAAAAACATTTATCTTATAATTA
TTTACTAAATAATCCCTTAATAAAATTACCAAAATACCCTTTCAATTATATGATAAGAGATAAC
Found at i:11970752 original size:130 final size:131
Alignment explanation
Indices: 11970235--11971025 Score: 459
Period size: 130 Copynumber: 6.2 Consensus size: 131
11970225 CTATTTTGCC
* ** * * *
11970235 TATAATTATTTACTAAATAGT--CTTTGTTAAATTA-CAAAATTAACATTTCCACTTTATGATAA
1 TATAATTATTTACTAAATAATCCCTTAATAAAATTACCAAAA-TACCATTTCCACTATATGATAA
* * * * * *
11970297 GAAATTGAGATGTGGCCAAATAGACTATTATGCCTTTATATCATAATTACGAAAATA-TCCCTT-
65 GAAATTAACATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTACGAAAATATTCCTTTA
11970360 -T
130 CT
* *
11970361 TATAATTATTTACTAAATAATCCCTT-ATAAAATTACCAAAATACTC-TTTCCATTATACGATAA
1 TATAATTATTTACTAAATAATCCCTTAATAAAATTACCAAAATAC-CATTTCCACTATATGATAA
* * * * * * * * *
11970424 GAAATTATCTTGTGGCCATATGGATTACTATGCCCTCATATAATAATTATGAAAATA--CATTTA
65 GAAATTAACATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTACGAAAATATTCCTTTA
11970487 TCT
130 -CT
* ** * ** * *
11970490 TATAATTATTTACTAAATAATTCCC--AATGAAATTACCATTATTCCATTTTTATTATATGATTA
1 TATAATTATTTACTAAATAA-TCCCTTAATAAAATTACCAAAATACCATTTCCACTATATGATAA
* ** * * * * * * *
11970553 GAGA-CGACATGTGGCCAAATTGACCATTATACTCTCATATCATAATTACAAAAAAAATCATTTT
65 GAAATTAACATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTACGAAAATATTC-CTTT
*
11970617 TCT
129 ACT
* * * *
11970620 TATAATTATTTACTAAATAATCCCTTAAT-AAATTATCAAAATGCCCTTTCAACTATATGATAAG
1 TATAATTATTTACTAAATAATCCCTTAATAAAATTACCAAAATACCATTTCCACTATATGATAAG
* ** * * *
11970684 AAGTTAACATGTGATCAAATTGACTATTGTGCCCTCATATCATAATTATGAAAATATTCCTTCAC
66 AAATTAACATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTACGAAAATATTCCTTTAC
11970749 -
131 T
* * * * * ** * *
11970749 T-T-A-TATTTACTAAAAAATCTCTCAA-GAAATTACTAAAATGTC-TTATCCATTATAAGATAA
1 TATAATTATTTACTAAATAATCCCTTAATAAAATTACCAAAATACCATT-TCCACTATATGATAA
* * * * * *
11970809 GAAATTGACATGTGGCCAAATAGACTATT-TGACTCTTATACCATAATTACGAAAATACTT-ATT
65 GAAATTAACATGTGGCCAAATTGACTATTATG-CCCTCATATCATAATTACGAAAATA-TTCCTT
*
11970872 CT-TT
128 -TACT
* * * * * * ** ** *
11970876 TAGAATTATGTACTAAGTAA-ACCTTGAA-GAGATTAATAAAATGTCATTTCCATTATATGATAA
1 TATAATTATTTACTAAATAATCCCTT-AATAAAATTACCAAAATACCATTTCCACTATATGATAA
* * * * * ** * * *
11970939 GAAATTGATATATGACCAAATGGACTGCTATACCTTCATA-CGATAATTATGAAAATA--CCTTT
65 GAAATTAACATGTGGCCAAATTGACTATTATGCCCTCATATC-ATAATTACGAAAATATTCCTTT
*
11971001 CTCT
129 -ACT
*
11971005 TATAATTATTTAGTAAATAAT
1 TATAATTATTTACTAAATAAT
11971026 TGTTTATGAA
Statistics
Matches: 511, Mismatches: 121, Indels: 62
0.74 0.17 0.09
Matches are distributed among these distances:
125 4 0.01
126 114 0.22
127 73 0.14
128 50 0.10
129 77 0.15
130 141 0.28
131 52 0.10
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (131 bp):
TATAATTATTTACTAAATAATCCCTTAATAAAATTACCAAAATACCATTTCCACTATATGATAAG
AAATTAACATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTACGAAAATATTCCTTTAC
T
Found at i:11971316 original size:130 final size:130
Alignment explanation
Indices: 11971036--11973674 Score: 1756
Period size: 130 Copynumber: 20.4 Consensus size: 130
11971026 TGTTTATGAA
* * * * *
11971036 ATTATATGATAAGAAATTAACATGTTGCCAAATGAA-TAAATATGCCCTCATATCATAATTACG-
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACT-ATTATGCCCTCATACCATAATTATGA
* * * * * *
11971099 AAATACTCCTTATCTTTTAATTGTTTACTAAAT-ATTCCTTAT-AAATTACCAAAAT-ACATTTT
65 AAATACTCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCTTTT
11971161 CC
130 -C
* * * **** *
11971163 ATTATATGATAATAAACTAACATGTGGCCAAATGAACTATTATATTGTCATACCATAATTATGTA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCCCTCATACCATAATTATGAA
* * * * *
11971228 AATACTCATTC-CTTTCTAGTTATTTACTAAATAATCCCTTAAGAAATTACTAAAATGCCCTTTT
66 AATACTCCTTCTC-TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCTTTT
*
11971292 T
130 C
* * * **
11971293 ATTATATGATAAAAAATTGACATGTGGCCAAATGGATTATTATGCCCTCATACCATAATTATCCA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCCCTCATACCATAATTATGAA
* ** * * *
11971358 AATAC-CCTTTCTCTTATAATCA-TTACTAAATAATCTTTTATTAAATTACCAACATACCCTTTT
66 AATACTCC-TTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCC-TTT
11971421 TC
129 TC
* * * * * * * *
11971423 ATTATATGAAAAGAAGTTCACATGTTGCCAAATAAAATATTATGCTCTCATTCCATAATTATG-A
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCCCTCATACCATAATTATGAA
* * * * *
11971487 AATAC-CCTTTCTTTTATAATTATTTA-TCAAATAATTCCTCAAGAAATTACTC-AAATG-CCAT
66 AATACTCC-TTCTCTTATAATTATTTACT-AAATAATCCCTTATGAAATTAC-CAAAATGCCCTT
11971548 TTC
128 TTC
* *** * * * * * * * **
11971551 TATTATATGATAAGAAATTTACATGTGATTAAATGGATTATTATTCCTTTATAACATAATAACAA
1 -ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCCCTCATACCATAATTATGA
* * ** * * *
11971616 AAATACCCCTTCTCTTATTATTATTTACTAAATAATCTTTTATGAAATTACTAAAATGCACTTTA
65 AAATACTCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCTTTT
*
11971681 A
130 C
* * * * * * ** *
11971682 ATTTTATGAGAAGAAATGGGCATGTGGCCAAATGGACTATTATGCCCACATATGATAATTACGAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCCCTCATACCATAATTATGAA
* * * * *
11971747 AATACAT-CTTCTCTTATAATTATTTACTAAATAATCCCTTAGGAAATTATCAAAATGACATTTC
66 AATAC-TCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCTTTT
11971811 C
130 C
* * * ** **
11971812 ATTATATAATAAGAAATTTACATGTGGCAAAATTG-ACTATTACACCCTCATATAATAATTATGA
1 ATTATATGATAAGAAATTGACATGTGGCCAAA-TGAACTATTATGCCCTCATACCATAATTATGA
* * * * * * *
11971876 CAATAACAT--TTCTTTTATTATTATTTATTAAATAATCCCCTATGAAAATACCAAAATACCCTT
65 AAAT-AC-TCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCTT
*
11971939 AAT-
128 -TTC
* * * * * * * **
11971942 ATTACACGATAAGAAATTGACATGTGGCTAAAT-ATACTATTATACTCTAATACCATACTTACAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGA-ACTATTATGCCCTCATACCATAATTATGA
* * * *
11972006 AAATAC-CATTCTCTTATAATTATTTATTAAATAATCCCTGATGAAATTAACAAAATG-CCTTTT
65 AAATACTCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCTTTT
11972069 CC
130 -C
* * ** * * * *
11972071 ATTATATGTTAAGAAAATGACATGTAACCAAACTG-ACTAATATGTCATCATATCATAATTACT-
1 ATTATATGATAAGAAATTGACATGTGGCCAAA-TGAACTATTATGCCCTCATACCATAATTA-TG
* * ***
11972134 AAAATACCCCTTCTCTTATAATTATTCACTAAATAATGCCC-TATGAAATTACCAAAATGTTGTT
64 AAAATACTCCTTCTCTTATAATTATTTACTAAATAAT-CCCTTATGAAATTACCAAAATGCCCTT
11972198 TTC
128 TTC
* * * * * * *
11972201 ATTATTTGATAAAAAATTGACA-GATGGCCAAAATTGATC-GTTATTCTCTCATGCCATAATTAT
1 ATTATATGATAAGAAATTGACATG-TGGCC-AAA-TGAACTATTATGCCCTCATACCATAATTAT
* * * * * **
11972264 GAAAATAATCCTTTTCTTATAATTATTTACTAAA-AATCTCTTAAGAAATTACCAATATTTCCTT
63 GAAAATACTCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCTT
*
11972328 TCC
128 TTC
* * * * ** * * * *
11972331 ATGATATAATTAGAAACTGACATGTTACCAAATTG-ACTATTATACCCTTATATCATAATTATAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAA-TGAACTATTATGCCCTCATACCATAATTATGA
* * * ** ** *
11972395 AAATACCCCTTTTCTTATAATTACTTACTAAATAATTTCTTATGAAATTATGAAAATGCCCTTTG
65 AAATACTCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCTTTT
11972460 C
130 C
* ** * * *
11972461 ATTATATGATAAGAAATTAACATGTGGTTAAATTG-ATTATTGTACCCTCATACCATAATTATGA
1 ATTATATGATAAGAAATTGACATGTGGCCAAA-TGAACTATTATGCCCTCATACCATAATTATGA
* * * * * * * *
11972525 AAGTACCCCTTCTCTTAAAAATATTTACTAAATAATCCCTCAGGAAATTATTC-AAATGCGCTTT
65 AAATACTCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTA-CCAAAATGCCCTTT
*
11972589 TT
129 TC
* * * * * **** * * **
11972591 ATTATGTGATAATAAATTTACATATGGCTAAATGGAA-TATTATTTGTTTATAACATAATTACAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAAT-GAACTATTATGCCCTCATACCATAATTATGA
* * * * *
11972655 AAATGC-CCTTTCTCTTATAATTATTCACTGAATAATTCTTTATGAAATTACCAAAATG-CCTTT
65 AAATACTCC-TTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCTTT
*
11972718 AGC
129 -TC
* * * * *
11972721 ATTATATGATAAGAAATTGACAT-TAGACCAAATGGACTGTTATGCTCTTATACCATAATTATGA
1 ATTATATGATAAGAAATTGACATGT-GGCCAAATGAACTATTATGCCCTCATACCATAATTATGA
* * ** **
11972785 AAATTC-CCTTCTCTTATTATTATTTACTAAATAATCTCC-TATCTAATTATTAAAATG-CCTTT
65 AAATACTCCTTCTCTTATAATTATTTACTAAATAATC-CCTTATGAAATTACCAAAATGCCCTTT
*
11972847 TAA
129 T-C
* * ** * ** **
11972850 ATTTTATGATAGGAAATTGACATACGGCCAAATGAACTATTATACCC-CTATATTATAATTACAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCCCTC-ATACCATAATTATGA
* * * * * *
11972914 AAATGCTCATTCTCTTATAATTATTTACTAAATAATTGCC-TA-GAAAATTATCAAAATGTCATT
65 AAATACTCCTTCTCTTATAATTATTTACTAAATAA-TCCCTTATG-AAATTACCAAAATGCCCTT
*
11972977 TCC
128 TTC
* * * * * * ** * *
11972980 ATTATATGATAAGAAATTTACATGTGGCAAAATTG-ATTATTACGGCCTTATATAATAATTACGG
1 ATTATATGATAAGAAATTGACATGTGGCCAAA-TGAACTATTATGCCCTCATACCATAATTATGA
* ** * * ** * * ** *
11973044 TAATACTAATTCTTTTAAAATTATTTGTTAAAT-ATTCCTCTATGAAATTACCAAACTATCATTG
65 AAATACTCCTTCTCTTATAATTATTTACTAAATAATCCCT-TATGAAATTACCAAAATGCCCTT-
*
11973108 AT-
128 TTC
* * * ** *
11973110 ATTACATGATAAGAAATTGACATGTGGCAAAAT-AGACTAGTATGCTCC-CATATAATAATTACG
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGA-ACTATTATGC-CCTCATACCATAATTATG
* * ** **
11973173 AAAAATAC-CCTTCT-TTAATAGTTATTTACTAAATAATCCCTTAGGAAATTATTAAAATGATCT
64 -AAAATACTCCTTCTCTT-ATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCT
**
11973236 TCCC
127 TTTC
* ** * * *
11973240 ATTATATGATAAGAAAAGTG-CATGTAACTAAATTG-AGTATTATGGCCTCATACCATAATTATG
1 ATTATATGATAAG-AAATTGACATGTGGCCAAA-TGAACTATTATGCCCTCATACCATAATTATG
* *
11973303 AAAATAC-CTCTTCTCTTATAATTATTCACTAAATAAT-CCTCTATGAAATTACCAATATGCCC-
64 AAAATACTC-CTTCTCTTATAATTATTTACTAAATAATCCCT-TATGAAATTACCAAAATGCCCT
*
11973365 TTCC
127 TTTC
** * * * * * *
11973369 ATTATATGATAAGAAATTGACATGTAACCAAATGGACAATTGTGTCGTCATACCATAATTACGAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCCCTCATACCATAATTATGAA
* * * * **
11973434 AATA-TATCTTCTCTTATAATTTTTTACAAAATAATCCCTTAAGAAATTACCATTATG-CCTTTT
66 AATACT-CCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCTTTT
11973497 CC
130 -C
* ** ** * * *
11973499 ATTGTACAATAAGAAATTGACATGTAACCAAATGGACAATTATGTCCTCATACCATAATTATGAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCCCTCATACCATAATTATGAA
* ** * * *
11973564 AATA-TCCATTCTCTTACAATTATTTAAGAAATAATCTCC-TAGGAAATTACCAAAATGACATTT
66 AATACTCC-TTCTCTTATAATTATTTACTAAATAATC-CCTTATGAAATTACCAAAATGCCCTTT
11973627 TC
129 TC
* * *
11973629 ATTATACT-ATAGGAAATTGACATGTAGCCAAATGGACTATTATGCC
1 ATTATA-TGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCC
11973675 TTTGAAATGC
Statistics
Matches: 1960, Mismatches: 463, Indels: 175
0.75 0.18 0.07
Matches are distributed among these distances:
127 53 0.03
128 48 0.02
129 482 0.25
130 1263 0.64
131 113 0.06
132 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (130 bp):
ATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCCCTCATACCATAATTATGAA
AATACTCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCCTTTTC
Found at i:11971761 original size:389 final size:385
Alignment explanation
Indices: 11971036--11973731 Score: 1671
Period size: 389 Copynumber: 6.9 Consensus size: 385
11971026 TGTTTATGAA
* * * * * *
11971036 ATTATATGATAAGAAATTAACATGTTGCCAAAT-GAATAAATATGCCCTCATAT-CATAATTACG
1 ATTATATGAAAAGAAATTTACATGTGGCCAAATAGAAT-ATTATGCTCTCAT-TCCATAATTATG
* * * * * *
11971099 AAATACTCCTTATCT-TT-TAATTGTTTACTAAATATTCCT-TATAAATTACCAAAATACATTTT
64 AAATAC-CCTT-TCTCTTATAATTATTTACTAAATAATCCTCAAGAAATTACCAAAATGC-CTTT
* * * * * * ** * * **
11971161 CCATTATATGATAATAAACTAACATGTGGCCAAATGAACTATTATATTGTCATACCATAATTATG
126 CTATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATCCTCTTATACCATAATTACA
* * * * * * *
11971226 TAAATACTCATTC-CTTTCTAGTTATTTACTAAATAATCCCTTAAGAAATTACTAAAATGCCCTT
191 AAAATACCCCTTCTC-TTATAATTATTTACTAAATAATCTCTTATGAAATTACTAAAATG-CCTT
** * * * *
11971290 TTTATTATATGATAAAAAATTGACATGTGGCCAAATGGATTATTATGCCCTCATACCATAATTAT
254 TAAATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCACATATCATAATTA-
* * ** ** *
11971355 C-CAAATACCCTTTCTCTTATAATCA-TTACTAAATAATCTTTTATTAAATTACCAACATACCCT
318 CGAAAATACCC-TTCTCTTATAATTATTTACTAAATAATCCCTTAGGAAATTACCAA-ATACGCT
11971418 TTTTC
381 TTTTC
* * * *
11971423 ATTATATGAAAAGAAGTTCACATGTTGCCAAATAAAATATTATGCTCTCATTCCATAATTATGAA
1 ATTATATGAAAAGAAATTTACATGTGGCCAAATAGAATATTATGCTCTCATTCCATAATTATGAA
*
11971488 ATACCCTTTCTTTTATAATTATTTA-TCAAATAATTCCTCAAGAAATTACTC-AAATGCCATTTC
66 ATACCCTTTCTCTTATAATTATTTACT-AAATAA-TCCTCAAGAAATTAC-CAAAATGCC-TTTC
* ** * * *
11971551 TATTATATGATAAGAAATTTACATGTGATTAAATGGATTATTATTCCT-TTATAACATAATAACA
127 TATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTA-TCCTCTTATACCATAATTACA
* *
11971615 AAAATACCCCTTCTCTTATTATTATTTACTAAATAATCTTTTATGAAATTACTAAAATGCACTTT
191 AAAATACCCCTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAATTACTAAAATGC-CTTT
* * * * *
11971680 AAATTTTATGAGAAGAAATGGGCATGTGGCCAAATGGACTATTATGCCCACATATGATAATTACG
255 AAATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCACATATCATAATTACG
* * * *
11971745 AAAATACATCTTCTCTTATAATTATTTACTAAATAATCCCTTAGGAAATTATCAAA-ATGACATT
320 AAAATAC-CCTTCTCTTATAATTATTTACTAAATAATCCCTTAGGAAATTACCAAATACG-CTTT
*
11971809 TCC
383 TTC
* * * ** * *
11971812 ATTATAT-AATAAGAAATTTACATGTGGCAAAATTGACTATTACACCCTCATAT-AATAATTATG
1 ATTATATGAA-AAGAAATTTACATGTGGCCAAATAGAATATTATGCTCTCAT-TCCATAATTATG
* * * * * * * * * *
11971875 ACAATAACATTTCTTTTATTATTATTTATTAAATAATCCCCTATGAAAATACCAAAATACCCTTA
64 A-AATACCCTTTCTCTTATAATTATTTACTAAATAATCCTC-AAGAAATTACCAAAAT-GCCTTT
* * * * * ** * * *
11971940 ATATTACACGATAAGAAATTGACATGTGGCTAAATATACTATTATACTCTAATACCATACTTACA
126 CTATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATCCTCTTATACCATAATTACA
* * * *
11972005 AAAATA-CCATTCTCTTATAATTATTTATTAAATAATCCCTGATGAAATTAAC-AAAATGCCTTT
191 AAAATACCCCTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAATT-ACTAAAATGCC-TT
** * * ** * *
11972068 TCCATTATATGTTAAGAAAATGACATGTAACCAAACT-GACTAATATG-TCATCATATCATAATT
254 TAAATTATATGATAAGAAATTGACATGTGGCCAAA-TGGACTATTATGCCCA-CATATCATAATT
* * * * *
11972131 ACTAAAATACCCCTTCTCTTATAATTATTCACTAAATAATGCCC-TATGAAATTACCAAA-ATGT
317 ACGAAAATA-CCCTTCTCTTATAATTATTTACTAAATAAT-CCCTTAGGAAATTACCAAATACGC
11972194 TGTTTTC
380 T-TTTTC
* * * * * *
11972201 ATTATTTGATAAA-AAATTGACA-GATGGCCAAAATTG-ATCGTTATTCTCTCATGCCATAATTA
1 ATTATATGA-AAAGAAATTTACATG-TGGCC-AAATAGAAT-ATTATGCTCTCATTCCATAATTA
* * * *
11972263 TGAAAATAATCCTTT-TCTTATAATTATTTACTAAA-AATCTCTTAAGAAATTACCAATATTTCC
62 TG-AAAT-ACCCTTTCTCTTATAATTATTTACTAAATAATC-CTCAAGAAATTACCAA-AATGCC
* * * * * * * *
11972326 TTTCCATGATATAATTAGAAACTGACATGTTACCAAATTGACTATTATACC-CTTATATCATAAT
123 TTTCTATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTAT-CCTCTTATACCATAAT
* * * *
11972390 TATAAAAATACCCCTTTTCTTATAATTACTTACTAAATAATTTCTTATGAAATTA-TGAAAATGC
187 TACAAAAATACCCCTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAATTACT-AAAATG-
** * ** * * * * * *
11972454 CCTTTGCATTATATGATAAGAAATTAACATGTGGTTAAATTGATTATTGTACCCTCATACCATAA
250 CCTTTAAATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCACATATCATAA
* * * * * * *
11972519 TTATGAAAGTACCCCTTCTCTTAAAAATATTTACTAAATAATCCCTCAGGAAATTATTCAAATGC
315 TTACGAAAATA-CCCTTCTCTTATAATTATTTACTAAATAATCCCTTAGGAAATTA-CCAAATAC
11972584 GCTTTTT-
378 GCTTTTTC
* * * * * * * ** *
11972591 ATTATGTGATAATAAATTTACATATGGCTAAATGGAATATTATTTG-T-TTATAACATAATTACA
1 ATTATATGAAAAGAAATTTACATGTGGCCAAATAGAATATTA--TGCTCTCATTCCATAATTA-T
* * * * * * *
11972654 AAAATGCCCTTTCTCTTATAATTATTCACTGAATAATTCTTTATGAAATTACCAAAATGCCTTTA
63 GAAATACCCTTTCTCTTATAATTATTTACTAAATAA-TCCTCAAGAAATTACCAAAATGCCTTT-
* *
11972719 GC-ATTATATGATAAGAAATTGACAT-TAGACCAAATGGACTGTTATGCTCTTATACCATAATTA
126 -CTATTATATGATAAGAAATTGACATGT-GACCAAATGGACTATTATCCTCTTATACCATAATTA
** * * * ** *
11972782 TGAAAAT-TCCCTTCTCTTATTATTATTTACTAAATAATCTCCTATCTAATTATTAAAATGCCTT
189 CAAAAATACCCCTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAATTACTAAAATGCC-T
* * ** * * *
11972846 TTAAATTTTATGATAGGAAATTGACATACGGCCAAATGAACTATTATACCC-CTATATTATAATT
253 TTAAATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCAC-ATATCATAATT
* * * * * * *
11972910 ACAAAAATGCTCATTCTCTTATAATTATTTACTAAATAATTGCC-TAGAAAATTATCAAA-ATGT
317 ACGAAAATAC-CCTTCTCTTATAATTATTTACTAAATAA-TCCCTTAGGAAATTACCAAATACG-
* *
11972973 CATTTCC
379 CTTTTTC
* * * * * * * *
11972980 ATTATATGATAAGAAATTTACATGTGGCAAAATTGATTATTACGGC-CTTATAT-AATAATTACG
1 ATTATATGAAAAGAAATTTACATGTGGCCAAATAGAATATTA-TGCTCTCAT-TCCATAATTA-T
* *** * * ** * * *
11973043 GTAATACTAATTCTTTTAAAATTATTTGTTAAATATTCCTCTATGAAATTACCAAACTAT-CATT
63 GAAATACCCTTTCTCTTATAATTATTTACTAAATAATCCTC-AAGAAATTACCAAA--ATGCCTT
** * * * * * * ** **
11973107 GATATTACATGATAAGAAATTGACATGTGGCAAAATAGACTAGTATGCTCCCATATAATAATTAC
125 TCTATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATCCTCTTATACCATAATTAC
* * * * *
11973172 GAAAAATA-CCCTTCT-TTAATAGTTATTTACTAAATAATCCCTTAGGAAATTATTAAAATGATC
190 -AAAAATACCCCTTCTCTT-ATAATTATTTACTAAATAATCTCTTATGAAATTACTAAAATG-CC
*** * ** * * * * * *
11973235 TTCCCATTATATGATAAGAAAAGTG-CATGTAACTAAATTGAGTATTATGGCCTCATACCATAAT
252 TTTAAATTATATGATAAG-AAATTGACATGTGGCCAAATGGACTATTATGCCCACATATCATAAT
* * * *
11973299 TATGAAAATACCTCTTCTCTTATAATTATTCACTAAATAAT-CCTCTATGAAATTACC-AATATG
316 TACGAAAATACC-CTTCTCTTATAATTATTTACTAAATAATCCCT-TAGGAAATTACCAAATACG
** *
11973362 CCCTTCC
379 CTTTTTC
* * ** * * * *
11973369 ATTATATGATAAGAAATTGACATGTAACCAAATGGACA-ATTGTG-TCGTCATACCATAATTACG
1 ATTATATGAAAAGAAATTTACATGTGGCCAAATAGA-ATATTATGCTC-TCATTCCATAATTATG
** * * * **
11973432 AAAATA-TATCTTCTCTTATAATTTTTTACAAAATAATCCCTTAAGAAATTACCATTATGCCTTT
64 -AAATACCCT-TTCTCTTATAATTATTTACTAAATAAT-CCTCAAGAAATTACCAAAATGCC-TT
* * ** * *
11973496 TCCATTGTACAATAAGAAATTGACATGTAACCAAATGGACAATTATGTCCTC--ATACCATAATT
125 TCTATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTA--TCCTCTTATACCATAATT
** * * * ** * * * *
11973559 ATGAAAATATCCATTCTCTTACAATTATTTAAGAAATAATCTCCTAGGAAATTACCAAAATGACA
188 ACAAAAATACCCCTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAATTACTAAAATG-CC
** * * *** *
11973624 TTTTCATTATACT-ATAGGAAATTGACATGTAGCCAAATGGACTATTATGCCTTTGAAATGC--A
252 TTTAAATTATA-TGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCC-CACATAT-CATA
* * **
11973686 ATTACAAAAATACCCTTTCTCTAATAGGTATTTACTAAATAATCCC
314 ATTACGAAAATACCC-TTCTCTTATAATTATTTACTAAATAATCCC
11973732 CTATAAAATT
Statistics
Matches: 1787, Mismatches: 414, Indels: 213
0.74 0.17 0.09
Matches are distributed among these distances:
385 3 0.00
386 8 0.00
387 73 0.04
388 58 0.03
389 1047 0.59
390 557 0.31
391 39 0.02
392 2 0.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (385 bp):
ATTATATGAAAAGAAATTTACATGTGGCCAAATAGAATATTATGCTCTCATTCCATAATTATGAA
ATACCCTTTCTCTTATAATTATTTACTAAATAATCCTCAAGAAATTACCAAAATGCCTTTCTATT
ATATGATAAGAAATTGACATGTGACCAAATGGACTATTATCCTCTTATACCATAATTACAAAAAT
ACCCCTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAATTACTAAAATGCCTTTAAATTA
TATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCACATATCATAATTACGAAAATA
CCCTTCTCTTATAATTATTTACTAAATAATCCCTTAGGAAATTACCAAATACGCTTTTTC
Found at i:11972140 original size:519 final size:513
Alignment explanation
Indices: 11971036--11973729 Score: 1700
Period size: 519 Copynumber: 5.2 Consensus size: 513
11971026 TGTTTATGAA
* * * * * * *
11971036 ATTATATGATAAGAAATTAACATGTTG-CCAAAT-GAATAAATATGCCCTCATATCATAATTAC-
1 ATTATATGATAAGAAATTTACATG-TGACTAAATGGAAT-ATTAT-TCTTTATAACATAATTACA
* * * * * * * * * *
11971098 GAAATACTCCTTATCTTTTAATTGTTTACTAAATATTC-CTTAT-AAATTACCAAAATACATTTT
63 AAAATACCCCTTCTCTTATAATTATTCACTAAATAATCTTTTATGAAATTACCAAAATGC-CTTT
* * * * * * * ** *
11971161 CCATTATATGATAATAAACTAACATGTGGCCAAATGAACTATTATATTGTCATACCATAATTATG
127 ACATTTTATGATAAGAAATTGACATGTGGCCAAATGGACTGTTATGCTCTCATACCATAATTATG
* * * *
11971226 TAAATAC-TCATTC-CTTTCTAGTTATTTACTAAATAATCCCTTAAGAAATTACTAAAATGCCCT
192 AAAATACATC-TTCTC-TTATAATTATTTACTAAATAATCCCTTAAGAAATTAC-AAAATGACCT
** * * * * * *
11971289 TTTTATTATATGATAAAAAATTGACATGTGGCCAAATGGATTATTATGCCCTCATACCATAATTA
254 TTCCATTATATAATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTCATATCATAATTA
* * * * *
11971354 TCCAAATACCCTTTCTCTTATAATCATTACTAAATAATCTTTTATTAAATTACCAACATACCCTT
319 TAC-AATACCCTTTCTCTTATAATTATTACTAAATAATCTCTTATGAAATTACCAAAATACCCTT
* * * * * * * * *
11971419 TTTCATTATATGAAAAGAAGTTCACATGTTGCCAAATAAAATATTATGCTCTCATTCCATAATTA
383 TAT-ATTATATGATAAGAAATTAACATGTGGCTAAATATAATATTATACTCTCATACCATAATTA
** * * * * * *
11971484 TGAAATACCCTTTCTTTTATAATTATTTATCAAATAATTCCTCAAGAAATTACTCAAATGCCATT
447 AAAAATACCCATTCTCTTATAATTATTTATTAAATAATCCCTCAAGAAATTA-ACAAATGCCTTT
11971549 TCT
511 TCT
* * *
11971552 ATTATATGATAAGAAATTTACATGTGATTAAATGGATTATTATTCCTTTATAACATAATAACAAA
1 ATTATATGATAAGAAATTTACATGTGACTAAATGGAATATTATT-CTTTATAACATAATTACAAA
* * * *
11971617 AATACCCCTTCTCTTATTATTATTTACTAAATAATCTTTTATGAAATTACTAAAATGCACTTTAA
65 AATACCCCTTCTCTTATAATTATTCACTAAATAATCTTTTATGAAATTACCAAAATGC-CTTTAC
* * * * * * ** *
11971682 ATTTTATGAGAAGAAATGGGCATGTGGCCAAATGGACTATTATGCCCACATATGATAATTACGAA
129 ATTTTATGATAAGAAATTGACATGTGGCCAAATGGACTGTTATGCTCTCATACCATAATTATGAA
* *
11971747 AATACATCTTCTCTTATAATTATTTACTAAATAATCCCTTAGGAAATTATCAAAATGACATTTCC
194 AATACATCTTCTCTTATAATTATTTACTAAATAATCCCTTAAGAAATTA-CAAAATGACCTTTCC
* * * *
11971812 ATTATATAATAAGAAATTTACATGTGGCAAAATTGACTATTACACCCTCATATAATAATTATGAC
258 ATTATATAATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTCATATCATAATTAT-AC
* * * * * * * * *
11971877 AATAACATTTCTTTTATTATTATTTATTAAATAATCCCCTATGAAAATACCAAAATACCCTTAAT
322 AATACCCTTTCTCTTATAATTA-TTACTAAATAATCTCTTATGAAATTACCAAAATACCCTTTAT
* * * * * *
11971942 ATTACACGATAAGAAATTGACATGTGGCTAAATATACTATTATACTCTAATACCATACTTACAAA
386 ATTATATGATAAGAAATTAACATGTGGCTAAATATAATATTATACTCTCATACCATAATTA-AAA
* * *
11972007 AATA-CCATTCTCTTATAATTATTTATTAAATAATCCCTGATGAAATTAACAAAATGCCTTTTCC
450 AATACCCATTCTCTTATAATTATTTATTAAATAATCCCTCAAGAAATTAAC-AAATGCCTTTTCT
* * * * * * * * * * *
11972071 ATTATATGTTAAGAAAATGACATGTAACCAAACT-GACTAATATGTCATCATATCATAATTACTA
1 ATTATATGATAAGAAATTTACATGTGACTAAA-TGGAATATTAT-TCTTTATAACATAATTACAA
** **
11972135 AAATACCCCTTCTCTTATAATTATTCACTAAATAATGC-CCTATGAAATTACCAAAATGTTGTTT
64 AAATACCCCTTCTCTTATAATTATTCACTAAATAAT-CTTTTATGAAATTACCAAAATG-CCTTT
* * * * *
11972199 TCATTATT-TGATAAAAAATTGACA-GATGGCCAAAATTGA-TCGTTATTCTCTCATGCCATAAT
127 ACATT-TTATGATAAGAAATTGACATG-TGGCC-AAATGGACT-GTTATGCTCTCATACCATAAT
* * * **
11972261 TATGAAAATA-ATCCTTTTCTTATAATTATTTACTAAA-AATCTCTTAAGAAATTACCAATATTT
188 TATGAAAATACAT-CTTCTCTTATAATTATTTACTAAATAATCCCTTAAGAAATTA-CAAAATGA
* * * ** *
11972324 CCTTTCCATGATATAATTAGAAACTGACATGTTACCAAATTGACTATTATACCCTTATATCATAA
251 CCTTTCCATTATATAATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTCATATCATAA
* * ** *
11972389 TTATAAAAATACCCCTTT-TCTTATAATTACTTACTAAATAATTTCTTATGAAATTATGAAAATG
316 TTAT-ACAATA-CCCTTTCTCTTATAATTA-TTACTAAATAATCTCTTATGAAATTACCAAAATA
** * * * *
11972453 CCCTTTGCATTATATGATAAGAAATTAACATGTGGTTAAAT-TGATTATTGTACCCTCATACCAT
378 CCCTTTATATTATATGATAAGAAATTAACATGTGGCTAAATAT-AATATTATACTCTCATACCAT
* * * * * * * *
11972517 AATTATGAAAGTACCCCTTCTCTTAAAAATATTTACTAAATAATCCCTCAGGAAATTATTCAAAT
442 AATTA-AAAAATACCCATTCTCTTATAATTATTTATTAAATAATCCCTCAAGAAATTA-ACAAAT
11972582 GCGCTTTT-T
505 GC-CTTTTCT
* * * * *
11972591 ATTATGTGATAATAAATTTACATATGGCTAAATGGAATATTATTTGTTTATAACATAATTACAAA
1 ATTATATGATAAGAAATTTACATGTGACTAAATGGAATATTA-TTCTTTATAACATAATTACAAA
* * *
11972656 AATGCCCTTTCTCTTATAATTATTCACTGAATAAT-TCTTTATGAAATTACCAAAATGCCTTTAG
65 AATACCCCTTCTCTTATAATTATTCACTAAATAATCT-TTTATGAAATTACCAAAATGCCTTTA-
* * *
11972720 CATTATATGATAAGAAATTGACAT-TAGACCAAATGGACTGTTATGCTCTTATACCATAATTATG
128 CATTTTATGATAAGAAATTGACATGT-GGCCAAATGGACTGTTATGCTCTCATACCATAATTATG
* * * *** *
11972784 AAAATTC-CCTTCTCTTATTATTATTTACTAAATAATCTCC-TATCTAATTATTAAAATG-CCTT
192 AAAATACATCTTCTCTTATAATTATTTACTAAATAATC-CCTTAAGAAATTA-CAAAATGACC-T
** * * * ** *
11972846 TTAAATTTTATGATAGGAAATTGACATACGGCCAAA-TGAACTATTATACCC-CTATATTATAAT
254 TTCCATTATATAATAAGAAATTGACATGTGGCCAAATTG-ACTATTATACCCTC-ATATCATAAT
* * * * * * * *
11972909 TACAAAAATGCTCATTCTCTTATAATTATTTACTAAATAAT-TGCCTA-GAAAATTATCAAAATG
317 TA-TACAATACCCTTTCTCTTATAATTA-TTACTAAATAATCT-CTTATG-AAATTACCAAAATA
* * ** * * * ** * **
11972972 TCATTTCCATTATATGATAAGAAATTTACATGTGGCAAAAT-TGATTATTACGGC-CTTATATAA
378 CCCTTTATATTATATGATAAGAAATTAACATGTGGCTAAATAT-AATATTA-TACTCTCATACCA
*** ** * * * * * *
11973035 TAATTACGGTAATACTAATTCTTTTAAAATTATTTGTTAAAT-ATTCCTCTATGAAATTACCAAA
441 TAATTA-AAAAATACCCATTCTCTTATAATTATTTATTAAATAATCCCTC-AAGAAATTAACAAA
** * **
11973099 CTATCATTGAT
504 -TGCCTTTTCT
* * * * * * * * **
11973110 ATTACATGATAAGAAATTGACATGTGGCAAAATAGACTAGTATGCTCCCATATA-ATAATTACGA
1 ATTATATGATAAGAAATTTACATGTGACTAAATGGAATATTATTCT-TTATA-ACATAATTAC-A
* * ** * ** *
11973174 AAAATA-CCCTTCT-TTAATAGTTATTTACTAAATAATCCCTTAGGAAATTATTAAAATGATCTT
63 AAAATACCCCTTCTCTT-ATAATTATTCACTAAATAATCTTTTATGAAATTACCAAAATG-CCTT
** * * ** * * * *
11973237 CCCATTATATGATAAGAAAAGTG-CATGTAACTAAATTGAGTATTATGGC-CTCATACCATAATT
126 TACATTTTATGATAAG-AAATTGACATGTGGCCAAATGGACTGTTAT-GCTCTCATACCATAATT
* * * *
11973300 ATGAAAATACCTCTTCTCTTATAATTATTCACTAAATAAT-CCTCTATGAAATTACCAATATG-C
189 ATGAAAATACATCTTCTCTTATAATTATTTACTAAATAATCCCT-TAAGAAATTA-CAAAATGAC
* * ** * * * ** * *
11973363 CCTTCCATTATATGATAAGAAATTGACATGTAACCAAATGGACAATTGTGTCGTCATACCATAAT
252 CTTTCCATTATATAATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTCATATCATAAT
* * ** * * * * ** *
11973428 TACGAAAATA-TATCTTCTCTTATAATTTTTTACAAAATAATCCCTTAAGAAATTACCATTATGC
317 TA-TACAATACCCT-TTCTCTTATAA-TTATTACTAAATAATCTCTTATGAAATTACCAAAATAC
* ** * ** * ** * ** *
11973492 CTTTTCCATTGTACAATAAGAAATTGACATGTAACCAAATGGACA-ATTAT-GTCCTCATACCAT
379 CCTTTATATTATATGATAAGAAATTAACATGTGGCTAAATATA-ATATTATACT-CTCATACCAT
* * * ** * *
11973555 AATTATGAAAATATCCATTCTCTTACAATTATTTAAGAAATAATCTCCT-AGGAAATTACCAAAA
442 AATTA-AAAAATACCCATTCTCTTATAATTATTTATTAAATAATC-CCTCAAGAAATTAAC-AAA
*
11973619 TGACATTTTC-
504 TG-CCTTTTCT
* * * * * *
11973629 ATTATACT-ATAGGAAATTGACATGT-AGCCAAATGGACTATTATGCCTTT-GAA-ATGCAATTA
1 ATTATA-TGATAAGAAATTTACATGTGA-CTAAATGGAATATTAT-TCTTTATAACAT--AATTA
* * ** *
11973690 CAAAAATACCCTTTCTCTAATAGGTATTTACTAAATAATC
61 CAAAAATACCCCTTCTCTTATAATTATTCACTAAATAATC
11973730 CCCTATAAAA
Statistics
Matches: 1696, Mismatches: 399, Indels: 163
0.75 0.18 0.07
Matches are distributed among these distances:
515 2 0.00
516 44 0.03
517 37 0.02
518 67 0.04
519 1193 0.70
520 343 0.20
521 10 0.01
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (513 bp):
ATTATATGATAAGAAATTTACATGTGACTAAATGGAATATTATTCTTTATAACATAATTACAAAA
ATACCCCTTCTCTTATAATTATTCACTAAATAATCTTTTATGAAATTACCAAAATGCCTTTACAT
TTTATGATAAGAAATTGACATGTGGCCAAATGGACTGTTATGCTCTCATACCATAATTATGAAAA
TACATCTTCTCTTATAATTATTTACTAAATAATCCCTTAAGAAATTACAAAATGACCTTTCCATT
ATATAATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTCATATCATAATTATACAATA
CCCTTTCTCTTATAATTATTACTAAATAATCTCTTATGAAATTACCAAAATACCCTTTATATTAT
ATGATAAGAAATTAACATGTGGCTAAATATAATATTATACTCTCATACCATAATTAAAAAATACC
CATTCTCTTATAATTATTTATTAAATAATCCCTCAAGAAATTAACAAATGCCTTTTCT
Found at i:11972651 original size:779 final size:778
Alignment explanation
Indices: 11971462--11973620 Score: 1648
Period size: 779 Copynumber: 2.8 Consensus size: 778
11971452 AAATAAAATA
* *
11971462 TTATGCTCTCATTCCATAATTATGAAATACCCTTTCTTTTATAATTATTTATCAAATAATTCCTC
1 TTATGCTCTCATGCCATAATTATGAAATACCCTTTCTCTTATAATTATTTATCAAATAATTCCTC
* * * * * ** *
11971527 AAGAAATTACTCAAATGCCATTTCTATTATATGATAAGAAATTTACATGTGATTAAATGGATTAT
66 AAGAAATTACTCAAATGCCATTTCCATGATATAATAAGAAACTGACATGTGACCAAATGGACTAT
* * * *
11971592 TATTCCTTTATAACATAATAACAAAAATACCCCTTCTCTTATTATTATTTACTAAATAATCTTTT
131 TATACCCTTATAACATAATAACAAAAATACCCCTTCTCTTATAATTACTTACTAAATAATCTTTT
* **
11971657 ATGAAATTACTAAAATGCACTTTAAATTTTATGAGAAGAAATGGGCATGTGGCCAAATGGACTAT
196 ATGAAATTACTAAAATGCACTTTAAATTATATGAGAAGAAATGAACATGTGGCCAAATGGACTAT
* ** * * * *
11971722 TATGCCCACATATGATAATTACGAAAATACATCTTCTCTTATAATTATTTACTAAATAATCCCTT
261 TATACCCACATACCATAATTACGAAAATACACCTTCTCTTAAAAATATTTACTAAATAATCCCTC
* * *
11971787 AGGAAATTATCAAAATGACATTTCCATTATATAATAAGAAATTTACATGTGGCAAAATTGACTAT
326 AGGAAATTATCAAAATGACATTTCCATTATATAATAAGAAATTTACATATGGCAAAATGGAATAT
** * * * * *
11971852 TACACCCTCATATAATAATTATGACAATAACATTTCTTTTATTATTATTTATTAAATAATCCCCT
391 TACACCCTCATATAATAATTACAAAAATAACATTTCTCTTATAATTATTCACTAAATAATCCCCT
* * * *
11971917 ATGAAAATACCAAAATACCCTTAATATTACACGATAAGAAATTGACATGT-GGCTAAATATACTA
456 ATGAAAATACCAAAATACCCTTAACATTACACGATAAGAAATTGACAT-TAGACCAAATAGACTA
* *
11971981 TTATACTCTAATACCATACTTACAAAAATACCATTCTCTTATAATTATTTATTAAATAATC-CCT
520 TTATACTCTAATACCATAATTACAAAAATACCATTCTCTTATAATTATTTACTAAATAATCTCCT
* ** * **
11972045 GATGAAATTAACAAAATGCCTTTTCCATTATATGTTAAGAAAATGACATGTAACCAAACTG-ACT
585 -ATCAAATTAACAAAATGCCTTTTAAATTATATGATAAGAAAATGACATACAACCAAA-TGAACT
* * * *
11972109 AATATGTCATC-ATATCATAATTACTAAAATACCCCTTCTCTTATAATTATTCACTAAATAA-TG
648 AATAT-ACACCTATATCATAATTACAAAAATACCCATTCTCTTATAATTATTCACTAAATAATTG
** * *
11972172 CCCTATG-AAATTACCAAAATGTTGTTTTCATTATTTGATAAAAAATTGACA-GATGGCCAAAAT
712 -CCTA-GAAAATTACCAAAATGTCATTTCCATTATATGATAAAAAATTGACATG-TGG-CAAAAT
11972235 TGATCG
773 TGATCG
* *
11972241 TTATTCTCTCATGCCATAATTATGAAAATAATCCTTT-TCTTATAATTATTTA-CTAAA-AA-TC
1 TTATGCTCTCATGCCATAATTATG-AAAT-ACCCTTTCTCTTATAATTATTTATC-AAATAATTC
* * * * *
11972302 TCTTAAGAAATTAC-CAATATTTCC-TTTCCATGATATAATTAGAAACTGACATGTTACCAAATT
63 -CTCAAGAAATTACTCAA-A-TGCCATTTCCATGATATAATAAGAAACTGACATGTGACCAAATG
* * * *
11972365 GACTATTATACCCTTATATCATAATTATAAAAATACCCCTTTTCTTATAATTACTTACTAAATAA
125 GACTATTATACCCTTATAACATAATAACAAAAATACCCCTTCTCTTATAATTACTTACTAAATAA
* ** * * **
11972430 T-TTCTTATGAAATTA-TGAAAATGCCCTTTGCATTATATGATAAGAAATTAACATGTGGTTAAA
190 TCTT-TTATGAAATTACT-AAAATGCACTTTAAATTATATGAGAAGAAATGAACATGTGGCCAAA
* * * * * * *
11972493 TTGATTATTGTACCCTCATACCATAATTATGAAAGTACCCCTTCTCTTAAAAATATTTACTAAAT
253 TGGACTATTATACCCACATACCATAATTACGAAAATACACCTTCTCTTAAAAATATTTACTAAAT
* ** * * * *
11972558 AATCCCTCAGGAAATTATTC-AAATG-CGCTTTTTATTATGTGATAATAAATTTACATATGGCTA
318 AATCCCTCAGGAAATTA-TCAAAATGAC-ATTTCCATTATATAATAAGAAATTTACATATGGCAA
***** * ** * *
11972621 AATGGAATATTATTTGTTTATA-ACATAATTACAAAAATGCCCTTTCTCTTATAATTATTCACTG
381 AATGGAATATTACACCCTCATATA-ATAATTACAAAAATAACATTTCTCTTATAATTATTCACTA
* ** * * * * * *
11972685 AATAATTCTTTATGAAATTACCAAAATGCCTTTAGCATTATATGATAAGAAATTGACATTAGACC
445 AATAATCCCCTATGAAAATACCAAAATACCCTTAACATTACACGATAAGAAATTGACATTAGACC
* * * * ** * * *
11972750 AAATGGACTGTTATGCTCTTATACCATAATTATGAAAATTCCCTTCTCTTATTATTATTTACTAA
510 AAATAGACTATTATACTCTAATACCATAATTACAAAAATACCATTCTCTTATAATTATTTACTAA
* ** * * * **
11972815 ATAATCTCCTATCTAATTATTAAAATGCCTTTTAAATTTTATGATAGGAAATTGACATACGGCCA
575 ATAATCTCCTATCAAATTAACAAAATGCCTTTTAAATTATATGATAAGAAAATGACATACAACCA
* * * * * *
11972880 AATGAACTATTATACCCCTATATTATAATTACAAAAATGCTCATTCTCTTATAATTATTTACTAA
640 AATGAACTAATATACACCTATATCATAATTACAAAAATACCCATTCTCTTATAATTATTCACTAA
* * *
11972945 ATAATTGCCTAGAAAATTATCAAAATGTCATTTCCATTATATGATAAGAAATTTACATGTGGCAA
705 ATAATTGCCTAGAAAATTACCAAAATGTCATTTCCATTATATGATAAAAAATTGACATGTGGCAA
**
11973010 AATTGATTA
770 AATTGATCG
* * *** * * *** * * * *
11973019 TTACGGC-CTTATATAATAATTACGGTAATACTAATTCTTTTAAAATTATTTGTTAAAT-ATTCC
1 TTA-TGCTCTCATGCCATAATTA-TGAAATACCCTTTCTCTTATAATTATTTATCAAATAATTCC
* ** *** * * * * * * *
11973082 TCTATGAAATTAC-CAAACTATCATTGATATTACATGATAAGAAATTGACATGTGGCAAAATAGA
64 TC-AAGAAATTACTCAAA-TGCCATTTCCATGATATAATAAGAAACTGACATGTGACCAAATGGA
* * * * * *
11973146 CTAGTATGCTCC-CATATA-ATAATTACGAAAAATA-CCCTTCT-TTAATAGTTATTTACTAAAT
127 CTATTATAC-CCTTATA-ACATAATAAC-AAAAATACCCCTTCTCTT-ATAATTACTTACTAAAT
** * * *** * * ** ** *
11973207 AATCCCTTAGGAAATTATTAAAATG-ATCTTCCCATTATATGATAAGAAAAGTGCATGTAACTAA
188 AATCTTTTATGAAATTACTAAAATGCA-CTTTAAATTATATGAGAAGAAATGAACATGTGGCCAA
* * ** * * * * *
11973271 ATTGAGTATTATGGCCTCATACCATAATTATGAAAATAC-CTCTTCTCTTATAATTATTCACTAA
252 ATGGACTATTATACCCACATACCATAATTACGAAAATACAC-CTTCTCTTAAAAATATTTACTAA
* * * ** * * * ** *
11973335 ATAAT-CCTCTATGAAATTACCAATATG-CCCTTCCATTATATGATAAGAAATTGACATGTAACC
316 ATAATCCCTC-AGGAAATTATCAAAATGACATTTCCATTATATAATAAGAAATTTACATATGGCA
**** * ** * * * *
11973398 AAATGGACA-ATTGTGTCGTCATACCATAATTACGAAAAT-ATATCTTCTCTTATAATTTTTTAC
380 AAATGGA-ATATTACACCCTCATATAATAATTACAAAAATAACAT-TTCTCTTATAATTATTCAC
* * * * ** * * ** ** *
11973461 AAAATAATCCCTTAAGAAATTACCATTATGCCTTTTCCATTGTACAATAAGAAATTGACATGTA-
443 TAAATAATCCCCTATGAAAATACCAAAATACCCTTAACATTACACGATAAGAAATTGACAT-TAG
* * * * ** *
11973525 ACCAAATGGACAATTAT-GTCCTCATACCATAATTATGAAAATATCCATTCTCTTACAATTATTT
507 ACCAAATAGACTATTATACT-CTAATACCATAATTACAAAAATA-CCATTCTCTTATAATTATTT
** ** *
11973589 AAGAAATAATCTCCTAGGAAATTACCAAAATG
570 ACTAAATAATCTCCTATCAAATTAACAAAATG
11973621 ACATTTTCAT
Statistics
Matches: 1091, Mismatches: 247, Indels: 84
0.77 0.17 0.06
Matches are distributed among these distances:
777 5 0.00
778 228 0.21
779 810 0.74
780 42 0.04
781 6 0.01
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (778 bp):
TTATGCTCTCATGCCATAATTATGAAATACCCTTTCTCTTATAATTATTTATCAAATAATTCCTC
AAGAAATTACTCAAATGCCATTTCCATGATATAATAAGAAACTGACATGTGACCAAATGGACTAT
TATACCCTTATAACATAATAACAAAAATACCCCTTCTCTTATAATTACTTACTAAATAATCTTTT
ATGAAATTACTAAAATGCACTTTAAATTATATGAGAAGAAATGAACATGTGGCCAAATGGACTAT
TATACCCACATACCATAATTACGAAAATACACCTTCTCTTAAAAATATTTACTAAATAATCCCTC
AGGAAATTATCAAAATGACATTTCCATTATATAATAAGAAATTTACATATGGCAAAATGGAATAT
TACACCCTCATATAATAATTACAAAAATAACATTTCTCTTATAATTATTCACTAAATAATCCCCT
ATGAAAATACCAAAATACCCTTAACATTACACGATAAGAAATTGACATTAGACCAAATAGACTAT
TATACTCTAATACCATAATTACAAAAATACCATTCTCTTATAATTATTTACTAAATAATCTCCTA
TCAAATTAACAAAATGCCTTTTAAATTATATGATAAGAAAATGACATACAACCAAATGAACTAAT
ATACACCTATATCATAATTACAAAAATACCCATTCTCTTATAATTATTCACTAAATAATTGCCTA
GAAAATTACCAAAATGTCATTTCCATTATATGATAAAAAATTGACATGTGGCAAAATTGATCG
Found at i:11972981 original size:649 final size:643
Alignment explanation
Indices: 11971036--11973674 Score: 2066
Period size: 649 Copynumber: 4.1 Consensus size: 643
11971026 TGTTTATGAA
* * * * * *
11971036 ATTATATGATAAGAAATTAACATGTTGCCAAA-TGAATAAATATGCCCTCATATCATAATTACG-
1 ATTATATGATAAGAAA-TGACATGTGGCCAAATTGACT-ATTATGCCCTTATATAATAATTACGA
** * * * * *
11971099 AAATACTCCTTATCTTTTAATTGTTTACTAAAT-ATTCCTTAT-AAATTACCAAAAT-ACATTTT
64 AAATACAACTTTTCTTATAATTATTTACTAAATAATTCCTTATGAAATTATCAAAATGAC-CTTT
* * * * *** **
11971161 CCATTATATGATAATAAACTAACATGTGGCCAAA-TGAACTATTATATTGTCATACCATAATTAT
128 GCATTATATGATAAGAAATTAACATGTGGCAAAATTG-ACTATTATACCCTCATATAATAATTAT
* ** * * * *
11971225 GTAAATACTCATTCCTTTCTAGTTATTTACTAAATAATCCCTTAAGAAATTACTAAAATGCCCTT
192 G-AAATAC-CCTT-CTTTAAAATTATTTACTAAATAATCCCTCAGGAAATTATTAAAATGCCCTT
* * * ***
11971290 TTTATTATATGATAAAAAATTGACATGTGGCCAAATGGATTATTATGCCCTCATACCATAATTAT
254 TTTATTATATGATAAGAAATTGACATGTGGCTAAATGGAATATTATTTGCTCATACCATAATTA-
* * * * * *
11971355 C-CAAATACCCTTTCTCTTATAATCATT-ACTAAATAATCTTTTATTAAATTACCAACATACCCT
318 CAAAAATA-CCTTTCTCTTATAATTATTCACTAAATAATCCTTTATGAAATTACCAAAAT-GCCT
* * * * ** ** * *
11971418 TTTTCATTATATGAAAAGAAGTTCACATGTTGCCAAATAAAATATTATGCTC-TCATTCCATAAT
381 TTTCCATTATATGATAAGAAATTGACATGTAACCAAATGGACTATTATG-TCATCATACCATAAT
* * *
11971482 TATG-AAATA-CCCTTTCTTTTATAATTATTTA-TCAAATAAT-TCCTCAAGAAATTACTCAAAT
445 TATGAAAATATCCC-TTCTCTTATAATTATTTACT-AAATAATCTCCT-ATGAAATTACTAAAAT
* ** * * * *** * * *
11971543 GCCATTTCTATTATATGATAAGAAATTTACATGTGATTAAATGGATTATTATTCCTTTATAACAT
507 GCCTTTTAAATTTTATGATAAGAAATTGACATATGGCCAAATGAACTATTA-TCCTCTATAACAT
* * * *
11971608 AATAACAAAAATACCCCTTCTCTTATTATTATTTACTAAATAATCTTTTATG-AAATTACTAAAA
571 AATTACAAAAATACTCCTTCTCTTATAATTATTTACTAAATAATCTCTTA-GAAAATTAC-AAAA
**
11971672 TG-CACTTTAA
634 TGTCA-TTTCC
* * * * ** *
11971682 ATTTTATGAGAAGAAATGGGCATGTGGCCAAATGGACTATTATGCCCACATATGATAATTACGAA
1 ATTATATGATAAGAAAT-GACATGTGGCCAAATTGACTATTATGCCCTTATATAATAATTACGAA
* * * * * *
11971747 AATACATCTTCTCTTATAATTATTTACTAAATAATCCCTTAGGAAATTATCAAAATGACATTTCC
65 AATACAACTTTTCTTATAATTATTTACTAAATAATTCCTTATGAAATTATCAAAATGACCTTTGC
* * *
11971812 ATTATATAATAAGAAATTTACATGTGGCAAAATTGACTATTACACCCTCATATAATAATTATGAC
130 ATTATATGATAAGAAATTAACATGTGGCAAAATTGACTATTATACCCTCATATAATAATTATGA-
** ** * * * ** * **
11971877 AATAACATTTCTTTTATTATTATTTATTAAATAATCCC-CTATGAAAATACCAAAATACCCTTAA
194 AAT-ACCCTTC-TTTAAAATTATTTACTAAATAATCCCTC-AGGAAATTATTAAAATGCCCTTTT
* * ** * * * *
11971941 TATTACACGATAAGAAATTGACATGTGGCTAAATATACTATTATACT-CTAATACCATACTTACA
256 TATTATATGATAAGAAATTGACATGTGGCTAAATGGAATATTAT-TTGCTCATACCATAATTACA
* * * * * *
11972005 AAAATACCATTCTCTTATAATTATTTATTAAATAATCCCTGATGAAATTAACAAAATGCCTTTTC
320 AAAATACCTTTCTCTTATAATTATTCACTAAATAATCCTTTATGAAATTACCAAAATGCCTTTTC
* * * *
11972070 CATTATATGTTAAGAAAATGACATGTAACCAAACT-GACTAATATGTCATCATATCATAATTACT
385 CATTATATGATAAGAAATTGACATGTAACCAAA-TGGACTATTATGTCATCATACCATAATTA-T
* * * *
11972134 -AAAATACCCCTTCTCTTATAATTATTCACTAAATAATGC-CCTATGAAATTACCAAAATG-TTG
448 GAAAATATCCCTTCTCTTATAATTATTTACTAAATAAT-CTCCTATGAAATTACTAAAATGCCT-
** * * * * * **
11972196 TTTTCATTATT-TGATAAAAAATTGACAGATGGCCAAAATTGATC-GTTATTCTCTCATGCCATA
511 TTTAAATT-TTATGATAAGAAATTGACATATGGCC-AAA-TGAACTATTATCCTCT-ATAACATA
** * * *
11972259 ATTATGAAAATAATCCTTTTCTTATAATTATTTACTAAA-AATCTCTTA-AGAAATTACCAATAT
572 ATTACAAAAATACTCCTTCTCTTATAATTATTTACTAAATAATCTCTTAGA-AAATTA-CAAAAT
* *
11972322 TTCCTTTCC
635 GTCATTTCC
* * * ** * * **
11972331 ATGATATAATTAGAAACTGACATGTTACCAAATTGACTATTATACCCTTATATCATAATTATAAA
1 ATTATATGATAAGAAA-TGACATGTGGCCAAATTGACTATTATGCCCTTATATAATAATTACGAA
** * * * *
11972396 AATACCCCTTTTCTTATAATTACTTACTAAATAATTTCTTATGAAATTATGAAAATGCCCTTTGC
65 AATACAACTTTTCTTATAATTATTTACTAAATAATTCCTTATGAAATTATCAAAATGACCTTTGC
** * * **
11972461 ATTATATGATAAGAAATTAACATGTGGTTAAATTGATTATTGTACCCTCATACCATAATTATGAA
130 ATTATATGATAAGAAATTAACATGTGGCAAAATTGACTATTATACCCTCATATAATAATTATGAA
* * *
11972526 AGTACCCCTTCTCTTAAAAATATTTACTAAATAATCCCTCAGGAAATTATTCAAATGCGCTTTTT
195 A-TA-CCCTTCT-TTAAAATTATTTACTAAATAATCCCTCAGGAAATTATTAAAATGCCCTTTTT
* * * * * * *
11972591 ATTATGTGATAATAAATTTACATATGGCTAAATGGAATATTATTTGTTTATAACATAATTACAAA
257 ATTATATGATAAGAAATTGACATGTGGCTAAATGGAATATTATTTGCTCATACCATAATTACAAA
* * * **
11972656 AATGCCCTTTCTCTTATAATTATTCACTGAATAATTCTTTATGAAATTACCAAAATGCCTTTAGC
322 AAT-ACCTTTCTCTTATAATTATTCACTAAATAATCCTTTATGAAATTACCAAAATGCCTTTTCC
* *
11972721 ATTATATGATAAGAAATTGACAT-TAGACCAAATGGACTGTTATGCTC-TTATACCATAATTATG
386 ATTATATGATAAGAAATTGACATGTA-ACCAAATGGACTATTATG-TCATCATACCATAATTATG
* ** *
11972784 AAAAT-TCCCTTCTCTTATTATTATTTACTAAATAATCTCCTATCTAATTATTAAAATGCCTTTT
449 AAAATATCCCTTCTCTTATAATTATTTACTAAATAATCTCCTATGAAATTACTAAAATGCCTTTT
* * * **
11972848 AAATTTTATGATAGGAAATTGACATACGGCCAAATGAACTATTATACCCCTATATTATAATTACA
514 AAATTTTATGATAAGAAATTGACATATGGCCAAATGAACTATTAT-CCTCTATAACATAATTACA
* * *
11972913 AAAATGCTCATTCTCTTATAATTATTTACTAAATAAT-TGCCTAGAAAATTATCAAAATGTCATT
578 AAAATACTCCTTCTCTTATAATTATTTACTAAATAATCT-CTTAGAAAATTA-CAAAATGTCATT
11972977 TCC
641 TCC
* * * * * **
11972980 ATTATATGATAAGAAATTTACATGTGGCAAAATTGATTATTACGGCCTTATATAATAATTACGGT
1 ATTATATGATAAGAAA-TGACATGTGGCCAAATTGACTATTATGCCCTTATATAATAATTACGAA
* ** * * * *
11973045 AATACTAA-TTCTT-TTAAAATTATTTGTTAAAT-ATTCCTCTATGAAATTACCAAACT-ATCAT
65 AATAC-AACTT-TTCTTATAATTATTTACTAAATAATTCCT-TATGAAATTATCAAAATGACCTT
* * * * * *
11973106 TGATATTACATGATAAGAAATTGACATGTGGCAAAATAGACTAGTATGCTCC-CATATAATAATT
127 TG-CATTATATGATAAGAAATTAACATGTGGCAAAATTGACTATTATAC-CCTCATATAATAATT
* * * **
11973170 ACGAAAAATACCCTTCTTTAATAGTTATTTACTAAATAATCCCTTAGGAAATTATTAAAATGATC
190 ATG--AAATACCCTTCTTTAA-AATTATTTACTAAATAATCCCTCAGGAAATTATTAAAATGCCC
*** * ** * * *
11973235 TTCCCATTATATGATAAGAAAAGTG-CATGTAACTAAATTGAGTATTA-TGGCCTCATACCATAA
252 TTTTTATTATATGATAAG-AAATTGACATGTGGCTAAATGGAATATTATTTG-CTCATACCATAA
** * *
11973298 TTATGAAAATACCTCTTCTCTTATAATTATTCACTAAATAATCCTCTATGAAATTACCAATATGC
315 TTACAAAAATACCT-TTCTCTTATAATTATTCACTAAATAATCCTTTATGAAATTACCAAAATGC
* * * *
11973363 C-CTTCCATTATATGATAAGAAATTGACATGTAACCAAATGGACAATTGTGTCGTCATACCATAA
379 CTTTTCCATTATATGATAAGAAATTGACATGTAACCAAATGGACTATTATGTCATCATACCATAA
* ** * * * * **
11973427 TTACGAAAATATATCTTCTCTTATAATTTTTTACAAAATAATC-CCTTAAGAAATTACCATTATG
444 TTATGAAAATATCCCTTCTCTTATAATTATTTACTAAATAATCTCC-TATGAAATTACTAAAATG
** * ** * ** * * *
11973491 CCTTTTCCATTGTACAATAAGAAATTGACATGTAACCAAATGGACAATTATGTCCTC-ATACCAT
508 CCTTTTAAATTTTATGATAAGAAATTGACATATGGCCAAATGAACTATTA--TCCTCTATAACAT
** * ** * *
11973555 AATTATGAAAATA-TCCATTCTCTTACAATTATTTAAGAAATAATCTCCTAGGAAATTACCAAAA
571 AATTACAAAAATACTCC-TTCTCTTATAATTATTTACTAAATAATCTCTTAGAAAATTA-CAAAA
* *
11973619 TGACATTTTC
634 TGTCATTTCC
* * *
11973629 ATTATACT-ATAGGAAATTGACATGTAGCCAAATGGACTATTATGCC
1 ATTATA-TGATAAGAAA-TGACATGTGGCCAAATTGACTATTATGCC
11973675 TTTGAAATGC
Statistics
Matches: 1568, Mismatches: 355, Indels: 137
0.76 0.17 0.07
Matches are distributed among these distances:
645 1 0.00
646 47 0.03
647 39 0.02
648 213 0.14
649 1079 0.69
650 181 0.12
651 8 0.01
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (643 bp):
ATTATATGATAAGAAATGACATGTGGCCAAATTGACTATTATGCCCTTATATAATAATTACGAAA
ATACAACTTTTCTTATAATTATTTACTAAATAATTCCTTATGAAATTATCAAAATGACCTTTGCA
TTATATGATAAGAAATTAACATGTGGCAAAATTGACTATTATACCCTCATATAATAATTATGAAA
TACCCTTCTTTAAAATTATTTACTAAATAATCCCTCAGGAAATTATTAAAATGCCCTTTTTATTA
TATGATAAGAAATTGACATGTGGCTAAATGGAATATTATTTGCTCATACCATAATTACAAAAATA
CCTTTCTCTTATAATTATTCACTAAATAATCCTTTATGAAATTACCAAAATGCCTTTTCCATTAT
ATGATAAGAAATTGACATGTAACCAAATGGACTATTATGTCATCATACCATAATTATGAAAATAT
CCCTTCTCTTATAATTATTTACTAAATAATCTCCTATGAAATTACTAAAATGCCTTTTAAATTTT
ATGATAAGAAATTGACATATGGCCAAATGAACTATTATCCTCTATAACATAATTACAAAAATACT
CCTTCTCTTATAATTATTTACTAAATAATCTCTTAGAAAATTACAAAATGTCATTTCC
Found at i:11974231 original size:130 final size:128
Alignment explanation
Indices: 11973737--11974882 Score: 862
Period size: 129 Copynumber: 9.0 Consensus size: 128
11973727 ATCCCCTATA
* * * *
11973737 AAATTG-CATGTGGCCAAA-GTGACTATTATGCCTTCATACCATACTTATGAAAATACCCCTTCT
1 AAATTGACATGT-GCCAAATG-GACTATTATACCCTCATACCATAATTATGAAAATACCCTTTCT
* * * * *
11973800 CTTGTAATTATTTACTAAATAATTCTCTATGAAATTACCAAAATACCTTTTTGCAATATATGATA
64 CTTATAATTATTTACTAAATAATCCT-TATGAAATTACCAAAATACC-CTTTCCATTATATGATA
11973865 AG
127 AG
* * * * *
11973867 AAATTGACATGTGCCTCAATGGACTATTATGCCTTCATACCATAATTACGAAAATA--C-TCCTC
1 AAATTGACATGTGCC-AAATGGACTATTATACCCTCATACCATAATTATGAAAATACCCTTTCTC
* ** ** * *
11973929 TTATAATTATTTACTAAATAATGCCTTGTGAAACAAATAAAATACTCTTTCCATTATATGATAGG
65 TTATAATTATTTACTAAATAAT-CCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * * * * * * * * *
11973994 AAGTTAACTTGTGGCTACATTGAATATTATGCCCTCATACCATAA-TA-CAAACATAACCTTTCC
1 AAATTGACATGT-GCCAAATGGACTATTATACCCTCATACCATAATTATGAAA-ATACCCTTTCT
* *
11974057 CTTATAATTATTTACGAAATAATTACC-TATGAAATTTA-AAAAATACCCTTTCCATTATATGAT
64 CTTATAATTATTTACTAAATAA-T-CCTTATGAAA-TTACCAAAATACCCTTTCCATTATATGAT
11974120 AAG
126 AAG
* * ** * * *
11974123 AAATTGATATGTGGGCAAATGGACTATTATATTCTCATACTATAATTATGAAAATACCCTTTATG
1 AAATTGACATGT-GCCAAATGGACTATTATACCCTCATACCATAATTATGAAAATACCCTTTCTC
* * *
11974188 TTATAATTATTTACTAAATAATCATTTATGAAATTACCAAAATACCCTATCCATTATATAATAAG
65 TTATAATTATTTACTAAATAATC-CTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * * *
11974253 AAATTAACATGTAGTCAAATTGACTATTATACCCTCATACCATAATTATAAAAATACCCCTTCTC
1 AAATTGACATGT-GCCAAATGGACTATTATACCCTCATACCATAATTATGAAAATACCCTTTCTC
* * * * * * * *
11974318 TTATAATTATTTACTTAATAATTGCTCAAGAAATTACTATAAT-GCCTTTCAATTATATGATAAG
65 TTATAATTATTTACTAAATAA-TCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * *
11974382 AAATTGACATGTGGCCAAATGGACTATT-TGGCCTTTATACCATAATTATGAAAATA-CTTATTC
1 AAATTGACATGT-GCCAAATGGACTATTAT-ACCCTCATACCATAATTATGAAAATACCCT-TTC
* * * * * * * *
11974445 ACTTATAATTATTTACTAAATCATTCCTCAAGAAATTACTAAACT-GCC-TT--A--ACAT--TA
63 TCTTATAATTATTTACTAAAT-AATCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATA
*
11974502 TG
127 AG
* *** * *
11974504 ACA-T-AC--G-GCCAAATGGACTATT-TGGGTCTCATAACATAATTAT-AAATATA-CTTCTTC
1 AAATTGACATGTGCCAAATGGACTATTAT-ACCCTCATACCATAATTATGAAA-ATACCCT-TTC
* * ** * * *
11974561 TCTTATAATTATTTACTAAATAATCCCTTAAGACATTATTAAAATGCCATTTTCATTATATGATA
63 TCTTATAATTATTTACTAAATAAT-CCTTATGAAATTACCAAAATACCCTTTCCATTATATGATA
*
11974626 AA
127 AG
* * * ** ** *
11974628 AAATTGACATGTGGCCAAATGGACTATTACACCCTTATGCCATAATTACAAAAATACATTTTCTT
1 AAATTGACATGT-GCCAAATGGACTATTATACCCTCATACCATAATTATGAAAATACCCTTTCTC
* * * * *
11974693 TTCTAATTA-TTAGTAAATAATCCTTTATTAAATTACCAAAACACCCTTTCTATTATATGATAAG
65 TTATAATTATTTACTAAATAATCC-TTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * * * *
11974757 AAATTTACATATGGCC-AATGGATTATTTTTCCCTCATACCATAATTAGGAAAATACCCTTTCTC
1 AAATTGACATGT-GCCAAATGGACTATTATACCCTCATACCATAATTATGAAAATACCCTTTCTC
* * *
11974821 TTGTAATTATTTACTAAATAATTGCC-TATGAAATAACCAAAATACCCTTTCC-TTAAATGATA
65 TTATAATTATTTACTAAATAA-T-CCTTATGAAATTACCAAAATACCCTTTCCATTATATGATA
11974883 TACATTATAA
Statistics
Matches: 811, Mismatches: 162, Indels: 88
0.76 0.15 0.08
Matches are distributed among these distances:
115 5 0.01
116 76 0.09
117 1 0.00
118 3 0.00
120 3 0.00
121 1 0.00
122 8 0.01
124 7 0.01
125 4 0.00
126 8 0.01
127 48 0.06
128 104 0.13
129 285 0.35
130 206 0.25
131 51 0.06
132 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.36
Consensus pattern (128 bp):
AAATTGACATGTGCCAAATGGACTATTATACCCTCATACCATAATTATGAAAATACCCTTTCTCT
TATAATTATTTACTAAATAATCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
Found at i:11974290 original size:259 final size:256
Alignment explanation
Indices: 11973743--11974882 Score: 837
Period size: 259 Copynumber: 4.5 Consensus size: 256
11973733 TATAAAATTG
* * * * *
11973743 CATGTGGCCAAAGTGACTATTATGCCTTCATACCATACTTATGAAAATACCCCTTCTCTTGTAAT
1 CATGTGG-CAAATTGACTATTATGCCCTCATACCATA-ATA-CAAAATACCCCTTCTCTTATAAT
* * * *
11973808 TATTTACTAAATAATTCTCTATGAAATTACCAAAATACCTTTTTGCAATATATGATAAGAAATTG
63 TATTTACTAAATAATTC-CTATGAAATTACAAAAATACC-CTTTCCATTATATGATAAGAAATTG
* *
11973873 ACATGT-GCCTCAATGGACTATTATGCCTTCATACCATAATTACGAAAATACTCC----TCTTAT
126 ACATGTGGCC-AAATGGACTATTATGCCTTCATACCATAATTATGAAAATAC-CCTTTATCTTAT
* * * * * * *
11973933 AATTATTTACTAAATAATGCCTTGTGAAACAAATAAAATACTCTTTCCATTATATGATAGGAAGT
189 AATTATTTACTAAATAATGCCTTATGAAACAAACAAAATACCCTATCCATTATATAATAAGAAAT
11973998 TAA
254 TAA
* * * * * *
11974001 CTTGTGGCTACATTGAATATTATGCCCTCATACCATAATACAAACATAACCTTTCCCTTATAATT
1 CATGTGGC-AAATTGACTATTATGCCCTCATACCATAATACAAA-ATACCCCTTCTCTTATAATT
*
11974066 ATTTACGAAATAATTACCTATGAAATTTA-AAAAATACCCTTTCCATTATATGATAAGAAATTGA
64 ATTTACTAAATAATT-CCTATGAAA-TTACAAAAATACCCTTTCCATTATATGATAAGAAATTGA
* * ** * *
11974130 TATGTGGGCAAATGGACTATTAT-ATTCTCATACTATAATTATGAAAATACCCTTTATGTTATAA
127 CATGTGGCCAAATGGACTATTATGCCT-TCATACCATAATTATGAAAATACCCTTTATCTTATAA
* ** *
11974194 TTATTTACTAAATAAT-CATTTATGAAATTACCAAAATACCCTATCCATTATATAATAAGAAATT
191 TTATTTACTAAATAATGC-CTTATGAAACAAACAAAATACCCTATCCATTATATAATAAGAAATT
11974258 AA
255 AA
* * *
11974260 CATGTAGTCAAATTGACTATTATACCCTCATACCATAATTATAAAAATACCCCTTCTCTTATAAT
1 CATGT-GGCAAATTGACTATTATGCCCTCATACCATAA-TA-CAAAATACCCCTTCTCTTATAAT
* * * * * * *
11974325 TATTTACTTAATAATTGCTCAAGAAATTACTATAAT-GCCTTTCAATTATATGATAAGAAATTGA
63 TATTTACTAAATAATTCCT-ATGAAATTACAAAAATACCCTTTCCATTATATGATAAGAAATTGA
* *
11974389 CATGTGGCCAAATGGACTATT-TGGCCTTTATACCATAATTATGAAAATA-CTTATTCA-CTTAT
127 CATGTGGCCAAATGGACTATTAT-GCCTTCATACCATAATTATGAAAATACCCT-TT-ATCTTAT
* * * * ** * * * * * *
11974451 AATTATTTACTAAATCATTCCTCAAGAAA-TTAC-TAA-A--CT-GCC-TTA-ACATTATGACA-
189 AATTATTTACTAAATAATGCCTTATGAAACAAACAAAATACCCTATCCATTATATAATAAGAAAT
11974507 T-A
254 TAA
* * ** * * **
11974509 C--G-GCCAAATGGACTATT-TGGGTCTCATAACATAATTATAAATATACTTCTTCTCTTATAAT
1 CATGTGGCAAATTGACTATTAT-GCCCTCATACCATAA-TACAAA-ATACCCCTTCTCTTATAAT
* * * ** * * * *
11974570 TATTTACTAAATAATCCCTTAAGACATTATTAAAATGCCATTTTCATTATATGATAAAAAATTGA
63 TATTTACTAAATAATTCC-TATGAAATTACAAAAATACCCTTTCCATTATATGATAAGAAATTGA
** * ** ** * * *
11974635 CATGTGGCCAAATGGACTATTACACCCTT-ATGCCATAATTACAAAAATACATTTTCTTTTCTAA
127 CATGTGGCCAAATGGACTATTA-TGCCTTCATACCATAATTATGAAAATACCCTTTATCTTATAA
* * ** * * * * *
11974699 TTA-TTAGTAAATAAT-CCTTTATTAAATTACCAAAACACCCTTTCTATTATATGATAAGAAATT
191 TTATTTACTAAATAATGCC-TTATGAAACAAACAAAATACCCTATCCATTATATAATAAGAAATT
*
11974762 TA
255 AA
* * * * * * * * *
11974764 CATATGGCCAATGGATTATTTTTCCCTCATACCATAATTAGGAAAATACCCTTTCTCTTGTAATT
1 CATGTGGCAAATTGACTATTATGCCCTCATACCATAA-TA-CAAAATACCCCTTCTCTTATAATT
* * *
11974829 ATTTACTAAATAATTGCCTATGAAATAACCAAAATACCCTTTCC-TTAAATGATA
64 ATTTACTAAATAATT-CCTATGAAATTACAAAAATACCCTTTCCATTATATGATA
11974883 TACATTATAA
Statistics
Matches: 697, Mismatches: 139, Indels: 93
0.75 0.15 0.10
Matches are distributed among these distances:
244 6 0.01
245 87 0.12
246 74 0.11
247 9 0.01
248 1 0.00
249 2 0.00
250 3 0.00
251 8 0.01
252 6 0.01
253 8 0.01
254 3 0.00
255 5 0.01
256 65 0.09
257 62 0.09
258 114 0.16
259 195 0.28
260 46 0.07
261 3 0.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.36
Consensus pattern (256 bp):
CATGTGGCAAATTGACTATTATGCCCTCATACCATAATACAAAATACCCCTTCTCTTATAATTAT
TTACTAAATAATTCCTATGAAATTACAAAAATACCCTTTCCATTATATGATAAGAAATTGACATG
TGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATACCCTTTATCTTATAATTATT
TACTAAATAATGCCTTATGAAACAAACAAAATACCCTATCCATTATATAATAAGAAATTAA
Found at i:11974527 original size:116 final size:116
Alignment explanation
Indices: 11974394--11974608 Score: 299
Period size: 116 Copynumber: 1.9 Consensus size: 116
11974384 ATTGACATGT
* *
11974394 GGCCAAATGGACTATTTGGC-CTTTATACCATAATTATGAAA-ATACTTATTCACTTATAATTAT
1 GGCCAAATGGACTATTTGGCTC-TCATAACATAATTAT-AAATATACTTATTCACTTATAATTAT
* * *
11974457 TTACTAAATCATTCCTCAAGAAATTACTAAACTGCCTTAACATTATGACATAC
64 TTACTAAATAATCCCTCAAGAAATTACTAAAATGCCTTAACATTATGACATAC
* * *
11974510 GGCCAAATGGACTATTTGGGTCTCATAACATAATTATAAATATACTTCTTCTCTTATAATTATTT
1 GGCCAAATGGACTATTTGGCTCTCATAACATAATTATAAATATACTTATTCACTTATAATTATTT
* * *
11974575 ACTAAATAATCCCTTAAGACATTATTAAAATGCC
66 ACTAAATAATCCCTCAAGAAATTACTAAAATGCC
11974609 ATTTTCATTA
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
115 3 0.03
116 82 0.95
117 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (116 bp):
GGCCAAATGGACTATTTGGCTCTCATAACATAATTATAAATATACTTATTCACTTATAATTATTT
ACTAAATAATCCCTCAAGAAATTACTAAAATGCCTTAACATTATGACATAC
Found at i:11975220 original size:120 final size:118
Alignment explanation
Indices: 11975006--11975222 Score: 276
Period size: 120 Copynumber: 1.8 Consensus size: 118
11974996 AATACCCCTA
* * *
11975006 AAGGGTATTTTGGTAATTTCACACTCTTATGGTACTGCTATGATTTCAAATGCATCAAAAATCCT
1 AAGGGTATTTTGGTAATTTCACACTCTTATGGTAATGCTATGATTTCAAATGCACCAAAAATCAT
* **
11975071 AAAATATTATGAAATTGAGATCTTGAAAGTTTGGTGAATTACAAAAGTATCCT
66 AAAATATTATGAAATTGAGATATCAAAAGTTTGGTGAATTACAAAAGTATCCT
* * *
11975124 AAGGTGTATTTTGGTAATCTT-ACACT-TTTTGAGATAATGTTATGATTTCAAATTCACCAAAAA
1 AAGG-GTATTTTGGTAAT-TTCACACTCTTATG-G-TAATGCTATGATTTCAAATGCACCAAAAA
* * *
11975187 TTATGAAATATTTTGAAATTGAGATATCAAAAGTTT
62 TCATAAAATATTATGAAATTGAGATATCAAAAGTTT
11975223 CATAAAAATT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
118 8 0.10
119 19 0.23
120 56 0.67
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (118 bp):
AAGGGTATTTTGGTAATTTCACACTCTTATGGTAATGCTATGATTTCAAATGCACCAAAAATCAT
AAAATATTATGAAATTGAGATATCAAAAGTTTGGTGAATTACAAAAGTATCCT
Found at i:11975870 original size:35 final size:35
Alignment explanation
Indices: 11975813--11976320 Score: 221
Period size: 35 Copynumber: 14.5 Consensus size: 35
11975803 TTACTAGTTG
* *
11975813 GAGAAATAAAGAT-AGTCGAGACAACACCAATAATT
1 GAGAAGTAAAGATGACTC-AGACAACACCAATAATT
* ***
11975848 GAGAAGATAAAGATGA-TCAGACAACACTAACGGTT
1 GAGAAG-TAAAGATGACTCAGACAACACCAATAATT
** *
11975883 GAGAAGATAAAGATGACT-AGGACAACACCAATGGTC
1 GAGAAG-TAAAGATGACTCA-GACAACACCAATAATT
* * *
11975919 GA-AGAGTAAAGATAACTGAGACAACACCAACAATT
1 GAGA-AGTAAAGATGACTCAGACAACACCAATAATT
* * * ** *
11975954 GGGAAGTGAAGATGACT-AGGACAACACTAATGGTC
1 GAGAAGTAAAGATGACTCA-GACAACACCAATAATT
* * ** *
11975989 GAAAAGTAAAGATAACTGGGACAACACCAACAATT
1 GAGAAGTAAAGATGACTCAGACAACACCAATAATT
* * ** ** *
11976024 GGGAAGTGAAGATGACTGGGACAACACCAATGGTC
1 GAGAAGTAAAGATGACTCAGACAACACCAATAATT
* * *
11976059 GAAAAGTAAAGATAACTGAGACAACACCAATAATT
1 GAGAAGTAAAGATGACTCAGACAACACCAATAATT
* * * ** * * *
11976094 AAGAAGTGAAGATGATTGGGACAACACCAACAGTC
1 GAGAAGTAAAGATGACTCAGACAACACCAATAATT
* * ** *
11976129 GAAAAGATAAAGATGA-TCGGACAACACCAGCAGTT
1 GAGAAG-TAAAGATGACTCAGACAACACCAATAATT
* * *
11976164 GAGAAGTAAAGATGA-TCGAGATAACACCAACAATC
1 GAGAAGTAAAGATGACTC-AGACAACACCAATAATT
* * * * *
11976199 AAAAAG-ATAAGATGA-TTAGGACAACTCCAATGATT
1 GAGAAGTA-AAGATGACTCA-GACAACACCAATAATT
* * ** * * *
11976234 GGGAAG-ATAAGATGATTGGGATAACCCCAATGATT
1 GAGAAGTA-AAGATGACTCAGACAACACCAATAATT
* * *
11976269 AAGAAGTAAAGATGA-TCAGGACAAC-CCTAATGATC
1 GAGAAGTAAAGATGACTCA-GACAACACC-AATAATT
* *
11976304 AAAAAGTAAAGATGACT
1 GAGAAGTAAAGATGACT
11976321 AGTTTAACAC
Statistics
Matches: 365, Mismatches: 90, Indels: 35
0.74 0.18 0.07
Matches are distributed among these distances:
34 17 0.05
35 307 0.84
36 40 0.11
37 1 0.00
ACGTcount: A:0.46, C:0.15, G:0.22, T:0.17
Consensus pattern (35 bp):
GAGAAGTAAAGATGACTCAGACAACACCAATAATT
Found at i:11975975 original size:70 final size:70
Alignment explanation
Indices: 11975866--11976178 Score: 405
Period size: 70 Copynumber: 4.5 Consensus size: 70
11975856 AAAGATGATC
* ** * *
11975866 AGACAACACTAACGGTTGAGAAGATAAAGATGACTAGGACAACACCAATGGTCGAAGAGTAAAGA
1 AGACAACACCAACAATTGAGAAG-TGAAGATGACTAGGACAACACCAATGGTCGAAAAGTAAAGA
11975931 TAACTG
65 TAACTG
* *
11975937 AGACAACACCAACAATTGGGAAGTGAAGATGACTAGGACAACACTAATGGTCGAAAAGTAAAGAT
1 AGACAACACCAACAATTGAGAAGTGAAGATGACTAGGACAACACCAATGGTCGAAAAGTAAAGAT
11976002 AACTG
66 AACTG
* * *
11976007 GGACAACACCAACAATTGGGAAGTGAAGATGACTGGGACAACACCAATGGTCGAAAAGTAAAGAT
1 AGACAACACCAACAATTGAGAAGTGAAGATGACTAGGACAACACCAATGGTCGAAAAGTAAAGAT
11976072 AACTG
66 AACTG
* * * * **
11976077 AGACAACACCAATAATTAAGAAGTGAAGATGATTGGGACAACACCAACAGTCGAAAAGATAAAGA
1 AGACAACACCAACAATTGAGAAGTGAAGATGACTAGGACAACACCAATGGTCGAAAAG-TAAAGA
*
11976142 TGA-TCG
65 TAACT-G
* * *
11976148 -GACAACACCAGCAGTTGAGAAGTAAAGATGA
1 AGACAACACCAACAATTGAGAAGTGAAGATGA
11976179 TCGAGATAAC
Statistics
Matches: 217, Mismatches: 23, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
70 189 0.87
71 28 0.13
ACGTcount: A:0.45, C:0.16, G:0.24, T:0.15
Consensus pattern (70 bp):
AGACAACACCAACAATTGAGAAGTGAAGATGACTAGGACAACACCAATGGTCGAAAAGTAAAGAT
AACTG
Found at i:11976047 original size:105 final size:106
Alignment explanation
Indices: 11975830--11976053 Score: 249
Period size: 105 Copynumber: 2.1 Consensus size: 106
11975820 AAAGATAGTC
* * *
11975830 GAGACAACACCAATAATTGAGAAGATAAAGATGATCAGACAACACTAACGGTTGAGAAGATAAAG
1 GAGACAACACCAACAATTGAGAAGATAAAGATGATCAGACAACACTAACGGTCGAAAAGATAAAG
* **
11975895 ATGACTAGGACAACACCAATGGTCGAAGAGTAAAGATAACT
66 ATAACTAGGACAACACCAAAAGTCGAAGAGTAAAGATAACT
* * *
11975936 GAGACAACACCAACAATTGGGAAG-TGAAGATGA-CTAGGACAACACTAATGGTCGAAAAG-TAA
1 GAGACAACACCAACAATTGAGAAGATAAAGATGATC-A-GACAACACTAACGGTCGAAAAGATAA
* * * * * *
11975998 AGATAACTGGGACAACACCAACAATTGGGA-AGTGAAGATGACT
64 AGATAACTAGGACAACACCAA-AAGTCGAAGAGTAAAGATAACT
*
11976041 GGGACAACACCAA
1 GAGACAACACCAA
11976054 TGGTCGAAAA
Statistics
Matches: 99, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
104 1 0.01
105 54 0.55
106 44 0.44
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.15
Consensus pattern (106 bp):
GAGACAACACCAACAATTGAGAAGATAAAGATGATCAGACAACACTAACGGTCGAAAAGATAAAG
ATAACTAGGACAACACCAAAAGTCGAAGAGTAAAGATAACT
Found at i:11976179 original size:70 final size:69
Alignment explanation
Indices: 11975832--11976293 Score: 362
Period size: 70 Copynumber: 6.6 Consensus size: 69
11975822 AGATAGTCGA
* * * * * ** *
11975832 GACAACACCAATAATTGAGAAGATAAAGATGATCAGACAACACTAACGGTTGAGAAGATAAAGAT
1 GACAACACCAATAGTCGAAAAG-TAAAGATGATCGGACAACACCAACAATTGAGAAG-TGAAGAT
*
11975897 GACTAG
64 GACTGG
* * * *
11975903 GACAACACCAATGGTCGAAGAGTAAAGAT-AACTGAGACAACACCAACAATTGGGAAGTGAAGAT
1 GACAACACCAATAGTCGAAAAGTAAAGATGATC-G-GACAACACCAACAATTGAGAAGTGAAGAT
*
11975967 GACTAG
64 GACTGG
* * * * *
11975973 GACAACACTAATGGTCGAAAAGTAAAGATAACTGGGACAACACCAACAATTGGGAAGTGAAGATG
1 GACAACACCAATAGTCGAAAAGTAAAGATGA-TCGGACAACACCAACAATTGAGAAGTGAAGATG
11976038 ACTGG
65 ACTGG
* * * *
11976043 GACAACACCAATGGTCGAAAAGTAAAGAT-AACTGAGACAACACCAATAATTAAGAAGTGAAGAT
1 GACAACACCAATAGTCGAAAAGTAAAGATGATC-G-GACAACACCAACAATTGAGAAGTGAAGAT
*
11976107 GATTGG
64 GACTGG
* * * *
11976113 GACAACACCAACAGTCGAAAAGATAAAGATGATCGGACAACACCAGCAGTTGAGAAGTAAAGATG
1 GACAACACCAATAGTCGAAAAG-TAAAGATGATCGGACAACACCAACAATTGAGAAGTGAAGATG
*
11976178 A-TCGA
65 ACT-GG
* * * * * * ** *
11976183 GATAACACCAACAATCAAAAAG-ATAAGATGATTAGGACAACTCCAATGATTGGGAAGAT-AAGA
1 GACAACACCAATAGTCGAAAAGTA-AAGATGA-TCGGACAACACCAACAATTGAGAAG-TGAAGA
*
11976246 TGATTGG
63 TGACTGG
* * *
11976253 GATAACCCCAAT-GAT-TAAGAAGTAAAGATGATCAGGACAAC
1 GACAACACCAATAG-TCGAA-AAGTAAAGATGATC-GGACAAC
11976294 CCTAATGATC
Statistics
Matches: 325, Mismatches: 49, Indels: 35
0.79 0.12 0.09
Matches are distributed among these distances:
68 1 0.00
69 15 0.05
70 259 0.80
71 48 0.15
72 2 0.01
ACGTcount: A:0.46, C:0.16, G:0.23, T:0.16
Consensus pattern (69 bp):
GACAACACCAATAGTCGAAAAGTAAAGATGATCGGACAACACCAACAATTGAGAAGTGAAGATGA
CTGG
Found at i:11976211 original size:140 final size:139
Alignment explanation
Indices: 11975832--11976293 Score: 461
Period size: 140 Copynumber: 3.3 Consensus size: 139
11975822 AGATAGTCGA
* * * * * *
11975832 GACAACACCAATAATTGAGAAGATAAAGATGATCAGACAACACTAACGGTTGAGAAGATAAAGAT
1 GACAACACCAATAGTCGAAAAGATAAAGATGATCGGACAACACCAACAGTTGAGAAG-TAAAGAT
* * *
11975897 GACTAGGACAACACCAATGGTCGAAGAGTAAAGATAACTGAGACAACACCAACAATTGGGAAGTG
65 GACGA-GACAACACCAATGGTCGAAAAGTAAAGATAACTGAGACAACACCAATAATTGGGAAGTG
* *
11975962 AAGATGACTAG
129 AAGATGATTGG
* * * * * * *
11975973 GACAACACTAATGGTCGAAAAG-TAAAGATAACTGGGACAACACCAACAATTGGGAAGTGAAGAT
1 GACAACACCAATAGTCGAAAAGATAAAGATGA-TCGGACAACACCAACAGTTGAGAAGTAAAGAT
* **
11976037 GACTGGGACAACACCAATGGTCGAAAAGTAAAGATAACTGAGACAACACCAATAATTAAGAAGTG
65 GAC-GAGACAACACCAATGGTCGAAAAGTAAAGATAACTGAGACAACACCAATAATTGGGAAGTG
11976102 AAGATGATTGG
129 AAGATGATTGG
* *
11976113 GACAACACCAACAGTCGAAAAGATAAAGATGATCGGACAACACCAGCAGTTGAGAAGTAAAGATG
1 GACAACACCAATAGTCGAAAAGATAAAGATGATCGGACAACACCAACAGTTGAGAAGTAAAGATG
* *** * * * * *
11976178 ATCGAGATAACACCAACAATCAAAAAG-ATAAGATGA-TTAGGACAACTCCAATGATTGGGAAGA
66 A-CGAGACAACACCAATGGTCGAAAAGTA-AAGATAACTGA-GACAACACCAATAATTGGGAAG-
11976241 T-AAGATGATTGG
127 TGAAGATGATTGG
* * *
11976253 GATAACCCCAAT-GAT-TAAGAAG-TAAAGATGATCAGGACAAC
1 GACAACACCAATAG-TCGAA-AAGATAAAGATGATC-GGACAAC
11976294 CCTAATGATC
Statistics
Matches: 265, Mismatches: 46, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
139 17 0.06
140 202 0.76
141 46 0.17
ACGTcount: A:0.46, C:0.16, G:0.23, T:0.16
Consensus pattern (139 bp):
GACAACACCAATAGTCGAAAAGATAAAGATGATCGGACAACACCAACAGTTGAGAAGTAAAGATG
ACGAGACAACACCAATGGTCGAAAAGTAAAGATAACTGAGACAACACCAATAATTGGGAAGTGAA
GATGATTGG
Found at i:11988917 original size:16 final size:16
Alignment explanation
Indices: 11988898--11988928 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11988888 TAAACGTATA
*
11988898 TGGAAATAAACTTTAT
1 TGGAAACAAACTTTAT
11988914 TGGAAACAAACTTTA
1 TGGAAACAAACTTTA
11988929 AGCCTTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (16 bp):
TGGAAACAAACTTTAT
Found at i:11989098 original size:2 final size:2
Alignment explanation
Indices: 11989091--11989119 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11989081 GCTTTCCATG
11989091 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11989120 TAAAAGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11991378 original size:130 final size:130
Alignment explanation
Indices: 11991244--11992060 Score: 630
Period size: 130 Copynumber: 6.3 Consensus size: 130
11991234 GCAATCTCTA
*** * * * * *
11991244 ATAATTATTTACTAAATAATCTTTTAAAAAATTACAAAAATGCCCTATCTATTATATGATAAGAA
1 ATAATTATTTACTAAATAATCCCCTAAGAAATTACCAAAATGCCATTTCCATTATATGATAAGAA
* * * * **
11991309 ACTGACATGTAGCCAAATTGACTAATATACCATCATGTCATAATTATGAAAATAACCCTTTTTTT
66 ATTGACATGTAGCCAAATGGACTAATATGCCCTCATACCATAATTATGAAAATAACCCTTTTTTT
* * ** * * *
11991374 ATAATTATTTACTAAATAATCTCCCGT-A-AAGTTACCAAAATGCCCTTTTTAATATGTCATAA-
1 ATAATTATTTACTAAATAATC-CCC-TAAGAAATTACCAAAATGCCATTTCCATTATATGATAAG
* * * * * * * * *
11991436 AATGTTGA-ACTGTGGCCAAAAT-GAC---TATG-CATAAATATCAAAATTGTAAAAAT-ACCAT
64 AA-ATTGACA-TGTAGCC-AAATGGACTAATATGCCCT-CATACCATAATTATGAAAATAACCCT
* *
11991494 TCTCTT
125 TTTTTT
* * * * *
11991500 ATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACCATTTTCATTATATGATAAGAA
1 ATAATTATTTACTAAATAATCCCCTAAGAAATTACCAAAATGCCATTTCCATTATATGATAAGAA
* * * * *
11991565 ATTGACATGT-GAACAAATGGACTACTATGCCCTTATACCATAATTATGAAAAT-ACCATTATTT
66 ATTGACATGTAG-CCAAATGGACTAATATGCCCTCATACCATAATTATGAAAATAACCCTTTTTT
11991628 T
130 T
** ** ** *
11991629 ATAATTATTTACTAAATGGTCCCC-AATGAAACCACCAAAATGTTATTTCCATTATATCATAAGA
1 ATAATTATTTACTAAATAATCCCCTAA-GAAATTACCAAAATGCCATTTCCATTATATGATAAGA
* * * ** * *
11991693 AATTGACATGTTGCCAAATGGACTATTATGCCCTCATACTATAATTACAAAAATATCTCTTTTTT
65 AATTGACATGTAGCCAAATGGACTAATATGCCCTCATACCATAATTATGAAAATAACCCTTTTTT
11991758 T
130 T
** * *
11991759 ATAATTATTTACTAAATAATCTACTAAGATATTACCAAAATGCCTTTTCCATTATATGATAAGAA
1 ATAATTATTTACTAAATAATCCCCTAAGAAATTACCAAAATGCCATTTCCATTATATGATAAGAA
* * * ** * *
11991824 ATTGGCATGTAGCCAAATGGAC-AATTGTGCCCTCGA-AGCGCAATTA-CAAAATTACCCTTTCT
66 ATTGACATGTAGCCAAATGGACTAA-TATGCCCTC-ATACCATAATTATGAAAATAACCCTTT-T
* *
11991886 CTA
128 TTT
* * ** * *
11991889 ATAGTTATTTACTAAATAATCCCCTATGAAATTATGAAAATACCATTTCCATTATATGATAAAAA
1 ATAATTATTTACTAAATAATCCCCTAAGAAATTACCAAAATGCCATTTCCATTATATGAT-AAGA
* * * *
11991954 AATTGACATGTGGCCAAATTGA-T--TATGTCCTCATACCATAATTA-GAAAAATACCCCTTTTT
65 AATTGACATGTAGCCAAATGGACTAATATGCCCTCATACCATAATTATG-AAAATAACCCTTTTT
*
11992015 AT
129 TT
* * *
11992017 ATAATTATTTACCAAATAATCCCCTAAGAAATCACAAAAATGCC
1 ATAATTATTTACTAAATAATCCCCTAAGAAATTACCAAAATGCC
11992061 TTATACCATA
Statistics
Matches: 540, Mismatches: 120, Indels: 56
0.75 0.17 0.08
Matches are distributed among these distances:
124 1 0.00
125 7 0.01
126 69 0.13
127 22 0.04
128 53 0.10
129 149 0.28
130 208 0.39
131 30 0.06
132 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.35
Consensus pattern (130 bp):
ATAATTATTTACTAAATAATCCCCTAAGAAATTACCAAAATGCCATTTCCATTATATGATAAGAA
ATTGACATGTAGCCAAATGGACTAATATGCCCTCATACCATAATTATGAAAATAACCCTTTTTTT
Found at i:11992239 original size:130 final size:129
Alignment explanation
Indices: 11992063--11992460 Score: 342
Period size: 130 Copynumber: 3.1 Consensus size: 129
11992053 AAAATGCCTT
* * * * * * *
11992063 ATACCATAAATATGAAGATACCACTTCTGTTATAATTATTTTCTAAATAAACACCTATGAAATTA
1 ATACCATAATTATGAAAATACCATTTCTCTTATAATTATTTACTAAATAATC-CCTATGAAATCA
* * *
11992128 CAATAATGTCTTTTTCATTATATGATAAGAAATTGACATGTGGCC-AATTGAATTATTATGGCTT
65 CAATAATGTCTTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATT-AACTATTATGCCAT
11992192 C
129 C
* * * **
11992193 ATATCATAATTATGAAAATACCATTTCTCTTATAATTATTTACTAAATAATCTCT-TAAAAAGAC
1 ATACCATAATTATGAAAATACCATTTCTCTTATAATTATTTACTAAATAATCCCTATGAAATCAC
* * * * *
11992257 AAAAAAT-ACTTTTTCCTTTATATGATAAGAAACTGACATGTGGCCAAATTCACTATTATGCCAT
66 -AATAATGTCTTTTT-CATTATATGATAAGAAATTGACATGTGGCCAAATTAACTATTATGCCAT
11992321 C
129 C
* ** * * * * * *
11992322 ATACCAAAATTACAAAAATACC-TCGTGTCTTATAATTGTTTGCTAGACAATCCCCTATGAAATC
1 ATACCATAATTATGAAAATACCAT-TTCTCTTATAATTATTTACTAAATAAT-CCCTATGAAATC
* * * * *
11992386 AC-CTAAATAGTC-TTTCCATTAAATGATAAGAAATTGACATGT-GACAAATTTAACTATTATAC
64 ACAAT-AAT-GTCTTTTTCATTATATGATAAGAAATTGACATGTGGCCAAA-TTAACTATTATGC
11992448 CATC
126 CATC
* *
11992452 GTATCATAA
1 ATACCATAA
11992461 GACTTGCACC
Statistics
Matches: 212, Mismatches: 46, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
128 13 0.06
129 90 0.42
130 99 0.47
131 9 0.04
132 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.35
Consensus pattern (129 bp):
ATACCATAATTATGAAAATACCATTTCTCTTATAATTATTTACTAAATAATCCCTATGAAATCAC
AATAATGTCTTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATTAACTATTATGCCATC
Found at i:11993483 original size:130 final size:130
Alignment explanation
Indices: 11993254--11993503 Score: 285
Period size: 130 Copynumber: 1.9 Consensus size: 130
11993244 ATCCCTTAAG
* * * * *
11993254 AAATTACTAAAATACCTTTTTCATTATATGATAAGAAAATTAACATGTAACCAAATGTACTATTA
1 AAATTACTAAAATACCCTTTCCATTATATGATAAGAAAATTAACATGTAACAAAATGGACAATTA
* *
11993319 TGCTCTTATATCATAATTACAAACATACTCCTTCTCT-TATAATTATTTACCAAATTTTTCCTAT
66 TGCTCTTATAACATAATTACAAAAATACTCCTTCT-TATATAATTATTTACCAAATTTTTCCTAT
11993383 A
130 A
* * * **
11993384 AAATTA-TCAAAATACCCTTTCCATTATATGATAA-TAAATTGATATGTGGCAAAATGGACAATT
1 AAATTACT-AAAATACCCTTTCCATTATATGATAAGAAAATTAACATGTAACAAAATGGACAATT
* * *
11993447 ATGC-CTTCATAACTTAATTACAAAAATTAC-CTCTTCTTATATTATTATTTACTAAAT
65 ATGCTCTT-ATAACATAATTACAAAAA-TACTC-CTTCTTATATAATTATTTACCAAAT
11993504 AATCCTTATC
Statistics
Matches: 100, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
128 3 0.03
129 43 0.43
130 54 0.54
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.39
Consensus pattern (130 bp):
AAATTACTAAAATACCCTTTCCATTATATGATAAGAAAATTAACATGTAACAAAATGGACAATTA
TGCTCTTATAACATAATTACAAAAATACTCCTTCTTATATAATTATTTACCAAATTTTTCCTATA
Found at i:11993816 original size:134 final size:128
Alignment explanation
Indices: 11993568--11993928 Score: 305
Period size: 134 Copynumber: 2.8 Consensus size: 128
11993558 CTCTTATACA
* ** * * * *
11993568 ATAATTATGAAAATACTC-ATTTTCTTATAATGATTACTAAATAATCCTTTATTAAGTTACCAAA
1 ATAATTACGAAAATAC-CAATTCCCTTATAATTATTACTAAATAATCCCTTATAAAATTACCAAA
* * * * * * *
11993632 ATACTATTTCCATTATATGTTAAAAAATTGGCATATGACAAAATGGACTATTATACCCTCAAACT
65 ATAC-ATTTTCATTATATGATAAGAAATTGACATATGACAAAATGAACTATTACACCCTCAAACC
*
11993697 ATAATTACGAAAATACCTTTTAATTCCCTTATAATTAGTTACTAAATAATCCCTTATAAAATTAT
1 ATAATTACGAAAATACC----AATTCCCTTATAATTA-TTACTAAATAATCCCTTATAAAATTAC
* * * * **
11993762 CAAAATATCATTTTCATTATATGATAAGAAGTTGACGTGTGGCCAAAA-GAACTATTACGTCCTC
61 CAAAATA-CATTTTCATTATATGATAAGAAATTGACATAT-GACAAAATGAACTATTACACCCTC
*
11993826 ATACC
124 AAACC
* * ** * * *
11993831 ATAATTAGGAAAATGCCCCTTCTCTTATAATTAATAACTAAATAATCCC-TAAAAAATTACCAAA
1 ATAATTACGAAAATACCAATTCCCTTATAATT-ATTACTAAATAATCCCTTATAAAATTACCAAA
* * * *
11993895 ATGCCCTTTTTATTATATGATAAGAAATTTACAT
65 AT-ACATTTTCATTATATGATAAGAAATTGACAT
11993929 GTTGCCAAGT
Statistics
Matches: 186, Mismatches: 36, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
128 1 0.01
129 55 0.30
130 26 0.14
131 1 0.01
133 12 0.06
134 84 0.45
135 7 0.04
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (128 bp):
ATAATTACGAAAATACCAATTCCCTTATAATTATTACTAAATAATCCCTTATAAAATTACCAAAA
TACATTTTCATTATATGATAAGAAATTGACATATGACAAAATGAACTATTACACCCTCAAACC
Found at i:11993945 original size:129 final size:130
Alignment explanation
Indices: 11993563--11993992 Score: 332
Period size: 129 Copynumber: 3.3 Consensus size: 130
11993553 TTATTCTCTT
* * * * * * * * ** *
11993563 ATACAATAATTATGAAAATACTCATTTTCTTATAA-TGATTACTAAATAATCCTTTATTAAGTTA
1 ATACCATAATTAGGAAAATACCCCTTCTCTTATAATTAATAACTAAATAATCCCTTAAAAAATTA
* * * * * * * * *
11993627 CCAAAATACTATTTCCATTATATGTTAAAAAATTGGCATAT-GACAAAATGGACTATTATACCCT
66 CCAAAATACCATTTTCATTATATGATAAGAAATTGACATGTGGCCAAAA-GAACTATTATACCTT
11993691 C
130 C
* * * ** * * * *
11993692 AAACTATAATTACGAAAATACCTTTTAATTCCCTTATAATTAGTTACTAAATAATCCCTTATAAA
1 ATACCATAATTAGGAAAATACC----CCTTCTCTTATAATTAATAACTAAATAATCCCTTAAAAA
* * * *
11993757 ATTATCAAAATATCATTTTCATTATATGATAAGAAGTTGACGTGTGGCCAAAAGAACTATTACGT
62 ATTACCAAAATACCATTTTCATTATATGATAAGAAATTGACATGTGGCCAAAAGAACTATTA--T
11993822 -CC-TC
125 ACCTTC
*
11993826 ATACCATAATTAGGAAAATGCCCCTTCTCTTATAATTAATAACTAAATAATCCC-TAAAAAATTA
1 ATACCATAATTAGGAAAATACCCCTTCTCTTATAATTAATAACTAAATAATCCCTTAAAAAATTA
* * * * * **
11993890 CCAAAATGCCCTTTTTATTATATGATAAGAAATTTACATGTTGCCAAGTTG-ACTATTATACCTT
66 CCAAAATACCATTTTCATTATATGATAAGAAATTGACATGTGGCCAA-AAGAACTATTATACCTT
11993954 C
130 C
* * ***
11993955 ATATCATAATTATGAAAATACTTTTTCTCTTATAATTA
1 ATACCATAATTAGGAAAATACCCCTTCTCTTATAATTA
11993993 TTTTTCTACC
Statistics
Matches: 239, Mismatches: 51, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
127 1 0.00
128 2 0.01
129 106 0.44
130 28 0.12
133 10 0.04
134 83 0.35
135 8 0.03
136 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (130 bp):
ATACCATAATTAGGAAAATACCCCTTCTCTTATAATTAATAACTAAATAATCCCTTAAAAAATTA
CCAAAATACCATTTTCATTATATGATAAGAAATTGACATGTGGCCAAAAGAACTATTATACCTTC
Found at i:11994316 original size:127 final size:129
Alignment explanation
Indices: 11994004--11994914 Score: 631
Period size: 128 Copynumber: 7.0 Consensus size: 129
11993994 TTTTCTACCT
* * * * * * *
11994004 AAATAC-CCTTTTCCTTATATGATAATAAATTTATATGTGGCCAAAAGGACTTTTATTCCCTCGT
1 AAATACTCC-TTTCATTATATGATAATAAATTGACATGTGGCCAAATGGACTATTATGCCCTCAT
* * * *
11994068 ATCAT-GTTACAAAAAAACCCCTTCTCTTATAATTA-TTACTAAATAATCT-TCTATTAAATTTC
65 ATCATAATTACAAAAATA-CCCTTCTCTTATAATTATTTACTAAATAATCTCT-TATGAAATTAC
*
11994130 TA
128 AA
* * * * * ** ** *
11994132 AAATACTCATTCCATTATATGATAAGAAATTAACATGTGGTCGTATATACTATTATGCCCTAATA
1 AAATACTCCTTTCATTATATGATAATAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATA
* * * *
11994197 CCATAATTACAAAAATACCTTTCTCTTATAATTATTTACTAAATAATCTCTTTTCAAATTAC-A
66 TCATAATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAATTACAA
* * * * *
11994260 AAATGC-CCTTACATTATATGATAATAAATTGACATGAGGCCAAATGGACTACTATGCCTTCATA
1 AAATACTCCTTTCATTATATGATAATAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATA
* * * * *
11994324 TCATATTTACGAAAATACCCTT-TTTTATAATTATTTGCTAAATAATCCCTTATGAAATTACAA
66 TCATAATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAATTACAA
** * ** *
11994387 AAATACTTTTTTCATTATATGATAAGAAAATTG--ATGTGGCTGAAT-GACTTATTATGCTCTCA
1 AAATACTCCTTTCATTATATGATAA-TAAATTGACATGTGGCCAAATGGAC-TATTATGCCCTCA
* * * * *
11994449 TATCATAATTACGAAAGTACTCCTTCTCTTATAATTACTTAATAAATATTC-CTATATGAAATTA
64 TATCATAATTACAAAAATAC-CCTTCTCTTATAATTATTTACTAAATAATCTCT-TATGAAATTA
11994513 CAA
127 CAA
* * * * *
11994516 AAATA-TCCTTTCTATTATATGACAGTAAATTGACATATGGCCAAATGGATTATTATGCCTTCAT
1 AAATACTCCTTTC-ATTATATGATAATAAATTGACATGTGGCCAAATGGACTATTATGCCCTCAT
* * * * * * * * *
11994580 ACCTTAATTACCAAAAT-GCCTCCTTTTATAATTATTTACTAAATAATCTCCTATGAAAATACCA
65 ATCATAATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAATTACAA
* * * * * *
11994644 AAATAC-CCTTTCCATTACATGATACGATAATGGACTATTATTCCATCAT-ACCATAAT-TACAA
1 AAATACTCCTTT-CATTATATGATA--ATAA---A-T-TGA---CAT-GTGGCCA-AATGGACTA
** * * * * *
11994706 AAAT-ACATCATACCATAATTAC-AAAATACCATTTCTTTTATAATTA-TTACTAAATAAT-TCC
53 TTATGCCCTCATATCATAATTACAAAAATACC-CTTCTCTTATAATTATTTACTAAATAATCT-C
* *
11994767 TTATTAAATTACCA
116 TTATGAAATTACAA
* * * * * ** * * *
11994781 ATATACT-ATTGTCATTATATGATAAGAAGTTGACATATAACCAAGTGGACTATTATACCCTCTT
1 AAATACTCCTT-TCATTATATGATAATAAATTGACATGTGGCCAAATGGACTATTATGCCCTCAT
* * * * *
11994845 ATCATAGTTACGAAAATACCCCTTCTATTATAATTATTTACTAAATAATCTCGTATGAAATTACT
65 ATCATAATTACAAAAATA-CCCTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAATTACA
11994910 A
129 A
11994911 AAAT
1 AAAT
11994915 GCCATTTACA
Statistics
Matches: 612, Mismatches: 129, Indels: 82
0.74 0.16 0.10
Matches are distributed among these distances:
126 41 0.07
127 118 0.19
128 172 0.28
129 108 0.18
130 69 0.11
131 4 0.01
133 1 0.00
134 1 0.00
135 5 0.01
136 6 0.01
137 58 0.09
138 24 0.04
139 5 0.01
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.37
Consensus pattern (129 bp):
AAATACTCCTTTCATTATATGATAATAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATA
TCATAATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCTCTTATGAAATTACAA
Found at i:11994478 original size:255 final size:256
Alignment explanation
Indices: 11994018--11994667 Score: 651
Period size: 255 Copynumber: 2.5 Consensus size: 256
11994008 ACCCTTTTCC
* * * * * * * * *
11994018 TTATATGATAATAAATTTATATGTGGCCAAAAGGACTTTTATTCCCTCGTATCAT-GTTACAAAA
1 TTATATGATAATAAATTGACATGAGGCCAAATGGACTATTATGCCTTCATATCATAATTACAAAA
* * * * * * *
11994082 AAACCCCTTCTCTTATAATTA-TTACTAAATAAT-CTTCTATTAAATTTCTAAAATACTCATTCC
66 ATA-CCCTT-TTTTATAATTATTTACTAAATAATCCCT-TATGAAATTACAAAAATACTCTTTCC
11994145 ATTATATGATAAGAAATTAACATGTGGTCGTATATACTATTATGCCCTAATACCATAATTACAAA
128 ATTATATGATAAGAAATT-ACATGTGGTCGTATATACTATTATGCCCTAATACCATAATTACAAA
* * * * *
11994210 AATACCTTTCTCTTATAATTATTTACTAAATAATCTCT-TTTCAAATTAC-AAAATGCCCTTAC-
192 AATACCCTTCTCTTATAATTACTTAATAAATAATC-CTATATCAAATTACAAAAATACCCTTACT
11994272 A
256 A
* * *
11994273 TTATATGATAATAAATTGACATGAGGCCAAATGGACTACTATGCCTTCATATCATATTTACGAAA
1 TTATATGATAATAAATTGACATGAGGCCAAATGGACTATTATGCCTTCATATCATAATTACAAAA
* * *
11994338 ATACCCTTTTTTATAATTATTTGCTAAATAATCCCTTATGAAATTACAAAAATACTTTTTTCATT
66 ATACCCTTTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACAAAAATACTCTTTCCATT
* * * * *
11994403 ATATGATAAGAAAATT-GATGTGG-C-TGA-ATGACTTATTATGCTCTCATATCATAATTACGAA
131 ATATGATAAG-AAATTACATGTGGTCGT-ATAT-AC-TATTATGCCCTAATACCATAATTACAAA
* * * * *
11994464 AGTACTCCTTCTCTTATAATTACTTAATAAATATTCCTATATGAAATTACAAAAATATCCTTTCT
192 AATAC-CCTTCTCTTATAATTACTTAATAAATAATCCTATATCAAATTACAAAAATACCCTTACT
11994529 A
256 A
* * * * * *
11994530 TTATATGACAGTAAATTGACAT-ATGGCCAAATGGATTATTATGCCTTCATACCTTAATTACCAA
1 TTATATGATAATAAATTGACATGA-GGCCAAATGGACTATTATGCCTTCATATCATAATTACAAA
* * * * *
11994594 AAT-GCCTCCTTTTATAATTATTTACTAAATAATCTCC-TATGAAAATACCAAAATACCCTTTCC
65 AATACCCT-TTTTTATAATTATTTACTAAATAATC-CCTTATGAAATTACAAAAATACTCTTTCC
*
11994657 ATTACATGATA
128 ATTATATGATA
11994668 CGATAATGGA
Statistics
Matches: 328, Mismatches: 53, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
252 3 0.01
253 4 0.01
254 46 0.14
255 130 0.40
256 30 0.09
257 113 0.34
258 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.38
Consensus pattern (256 bp):
TTATATGATAATAAATTGACATGAGGCCAAATGGACTATTATGCCTTCATATCATAATTACAAAA
ATACCCTTTTTTATAATTATTTACTAAATAATCCCTTATGAAATTACAAAAATACTCTTTCCATT
ATATGATAAGAAATTACATGTGGTCGTATATACTATTATGCCCTAATACCATAATTACAAAAATA
CCCTTCTCTTATAATTACTTAATAAATAATCCTATATCAAATTACAAAAATACCCTTACTA
Found at i:11994624 original size:257 final size:254
Alignment explanation
Indices: 11994094--11994667 Score: 628
Period size: 257 Copynumber: 2.2 Consensus size: 254
11994084 ACCCCTTCTC
* * * * *
11994094 TTATAATTA-TTACTAAATAAT-CTTCTATTAAATTTCTAAAATACTCATTCCATTATATGATAA
1 TTATAATTATTTACTAAATAATCCCT-TATGAAATTACAAAAATACTCTTTCCATTATATGATAA
*
11994157 GAAATTAACATGTGGTCGTATATACTATTATGCCCTAATACCATAATTACAAAAATACCTTTCTC
65 GAAATT-ACATGTGGTCGTATATACTATTATGCCCTAATACCATAATTACAAAAATACCCTTCTC
* * * * *
11994222 TTATAATTATTTACTAAATAATCTCTTTTCAAATTACAAAATGCCCTTACATTATATGATAATAA
129 TTATAATTACTTAATAAATAATCTCTTATCAAATTACAAAATACCCTTACATTATATGACAATAA
* * * *
11994287 ATTGACATGAGGCCAAATGGACTACTATGCCTTCATATCATATTTACGAAAATACCCTTTT
194 ATTGACATGAGGCCAAATGGACTACTATGCCTTCATACCATAATTACCAAAATACCCTCTT
* * *
11994348 TTATAATTATTTGCTAAATAATCCCTTATGAAATTACAAAAATACTTTTTTCATTATATGATAAG
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTACAAAAATACTCTTTCCATTATATGATAAG
* * * * * *
11994413 AAAATT-GATGTGG-C-TGA-ATGACTTATTATGCTCTCATATCATAATTACGAAAGTACTCCTT
66 -AAATTACATGTGGTCGT-ATAT-AC-TATTATGCCCTAATACCATAATTACAAAAATAC-CCTT
* * * *
11994474 CTCTTATAATTACTTAATAAATATTC-CTATATGAAATTACAAAAATATCCTTTCTATTATATGA
126 CTCTTATAATTACTTAATAAATAATCTCT-TATCAAATTAC-AAAATACCCTTAC-ATTATATGA
* * * * *
11994538 CAGTAAATTGACAT-ATGGCCAAATGGATTATTATGCCTTCATACCTTAATTACCAAAAT-GCCT
188 CAATAAATTGACATGA-GGCCAAATGGACTACTATGCCTTCATACCATAATTACCAAAATACCCT
11994601 CCTT
252 -CTT
* * * *
11994605 TTATAATTATTTACTAAATAATCTCC-TATGAAAATACCAAAATACCCTTTCCATTACATGATA
1 TTATAATTATTTACTAAATAATC-CCTTATGAAATTACAAAAATACTCTTTCCATTATATGATA
11994668 CGATAATGGA
Statistics
Matches: 267, Mismatches: 40, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
252 3 0.01
253 4 0.01
254 45 0.17
255 79 0.30
256 21 0.08
257 113 0.42
258 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (254 bp):
TTATAATTATTTACTAAATAATCCCTTATGAAATTACAAAAATACTCTTTCCATTATATGATAAG
AAATTACATGTGGTCGTATATACTATTATGCCCTAATACCATAATTACAAAAATACCCTTCTCTT
ATAATTACTTAATAAATAATCTCTTATCAAATTACAAAATACCCTTACATTATATGACAATAAAT
TGACATGAGGCCAAATGGACTACTATGCCTTCATACCATAATTACCAAAATACCCTCTT
Found at i:11995551 original size:129 final size:130
Alignment explanation
Indices: 11994976--11995884 Score: 825
Period size: 130 Copynumber: 7.0 Consensus size: 130
11994966 ACTACCCATC
* * * ** * * *
11994976 CCATTATTTGATAAAAAAGTGACATGTTTCCATAT-GCACTATTATACCCTTATATGATAATTAT
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATAG-ACTATTATACCCTTATATCATAATTAC
* * * ** * **
11995040 GAAAATACCAC-TTCACTTCTAATTATTTACTAAATAAT-CCTCTAAAAAATAACTAAAATGTCA
65 AAAAATACC-CTTTCTCTTATAATTATTTACTAAATAATCCCTC-ATGAAATTACTAAAATACCA
11995103 TTT
128 TTT
* * * *
11995106 CCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTCATATCATTATTATA
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATACCCTTATATCATAATTACA
* * ** *
11995171 AAAATATCCTTTTTCTTATAATTATTTACTAAATAATCCCAGATGAAATTACAAAAATACCATTT
66 AAAATACCCTTTCTCTTATAATTATTTACTAAATAATCCCTCATGAAATTACTAAAATACCATTT
* * ** * * *
11995236 CCATTATATTATAAGAAATTAACATGTGGTTAAATTGACTATTACA-CCTATATATCAAAATTAC
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATACCCT-TATATCATAATTAC
* * * * * *
11995300 AAAAAAACTCATTCTCTTAT--TTTTTTAATAAATAATCCCCCATGAAATTACTAAAATACC-TT
65 AAAAATACCCTTTCTCTTATAATTATTTACTAAATAATCCCTCATGAAATTACTAAAATACCATT
11995362 T
130 T
* * * * *
11995363 CCCA-AAAATGTTAAGAAATT-A-ATGTGGCCAAATAGACTATTATGCCCTCATATCATAATTAC
1 -CCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATACCCTTATATCATAATTAC
* * * ** *
11995425 AAAAATGCCCTTTATCTTATAATTATTTACTAAATAATCCCTCAAGAAATTACTAAAATGTCTTT
65 AAAAATACCCTTTCTCTTATAATTATTTACTAAATAATCCCTCATGAAATTACTAAAATACCATT
11995490 T
130 T
* * * * * *
11995491 CCAATATAT-ATAAGAAATTGACATGTGGTCAAATTGAATATTATGCCCTCATATCATAATT-CT
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATACCCTTATATCATAATTAC-
* * * * ** *
11995554 GAAAATA-CCTCTTCTCTTATATTTATTTACTAAATAATCTCCT-ATTAAATTATTGGAATACCC
65 AAAAATACCCT-TTCTCTTATAATTATTTACTAAATAATC-CCTCATGAAATTACTAAAATACCA
11995617 TTT
128 TTT
* * *
11995620 CCATTATATGATAAGAAATTGACATATGGCCAAATAGACTATTATTCTCTTATA-CTATAATTAC
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATACCCTTATATC-ATAATTAC
* * * * ** * * * *
11995684 AAAAATATCCC-TTCTTTTATAAATA-TTACCATATAATTTCTTATTAAATTACCAAAATATCAT
65 AAAAATA-CCCTTTCTCTTATAATTATTTACTAAATAATCCCTCATGAAATTACTAAAATACCAT
11995747 TT
129 TT
* *
11995749 CCATTATATGATAAGAAGTTGACATGTGGCCAAA-AGAACTATTACACCCTTATATCATAATTAC
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATAG-ACTATTATACCCTTATATCATAATTAC
* * *
11995813 GAAAATATCTTTTCTCTTATAATTATTTACTAAATAAT--CTCATTTGAAATTA-TCAAAATACC
65 AAAAATACCCTTTCTCTTATAATTATTTACTAAATAATCCCTCA--TGAAATTACT-AAAATACC
11995875 ATTT
127 ATTT
11995879 CCATTA
1 CCATTA
11995885 ACTATATACA
Statistics
Matches: 632, Mismatches: 119, Indels: 56
0.78 0.15 0.07
Matches are distributed among these distances:
125 45 0.07
126 4 0.01
127 61 0.10
128 57 0.09
129 194 0.31
130 265 0.42
131 4 0.01
132 2 0.00
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.37
Consensus pattern (130 bp):
CCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATACCCTTATATCATAATTACA
AAAATACCCTTTCTCTTATAATTATTTACTAAATAATCCCTCATGAAATTACTAAAATACCATTT
Found at i:11995765 original size:259 final size:259
Alignment explanation
Indices: 11995015--11995884 Score: 919
Period size: 259 Copynumber: 3.4 Consensus size: 259
11995005 CCATATGCAC
* * * * *
11995015 TATTATACCCTTATATGATAATTATGAAAATACCACTTCACTTCTAATTATTTACTAAATAATC-
1 TATTATACCCTTATATCATAATTACGAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCT
** * ** *
11995079 CTCTAAAAAATAACTAAAATGTCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGA
66 C-CTATTAAATTACTAAAATACCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATAGA
* * *
11995144 CTATTATACCCTCATATCATTATTATAAAAATATCCTTTTTCTTATAATTATTTACTAAATAATC
130 CTATTATACCCTCATATCATAATTACAAAAATATCCCTTTTCTTATAATTATTTACTAAATAATC
** * * *
11995209 CCAGATGAAATTACAAAAATACCATTTCCATTATATTATAAGAAATTAACATGTGGTTAAATTGA
195 CCTCATGAAATTACAAAAATATCATTTCCATTATA-TATAAGAAATTGACATGTGGTCAAATTGA
*
11995274 C
259 A
* * * * * *
11995275 TATTACA-CCTATATATCAAAATTAC-AAAAAAACTCATTCTCTTAT--TTTTTTAATAAATAAT
1 TATTATACCCT-TATATCATAATTACGAAAATACCTC-TTCTCTTATAATTATTTACTAAATAAT
* * * * * *
11995336 CCCCCATGAAATTACTAAAATACC-TTTCCCA-AAAATGTTAAGAAATT-A-ATGTGGCCAAATA
64 CTCCTATTAAATTACTAAAATACCATTT-CCATTATATGATAAGAAATTGACATGTGGCCAAATA
* *
11995397 GACTATTATGCCCTCATATCATAATTACAAAAAT-GCCCTTTATCTTATAATTATTTACTAAATA
128 GACTATTATACCCTCATATCATAATTACAAAAATATCCCTTT-TCTTATAATTATTTACTAAATA
* * * * *
11995461 ATCCCTCAAGAAATTACTAAAATGTCTTTTCCAATATATATAAGAAATTGACATGTGGTCAAATT
192 ATCCCTCATGAAATTACAAAAATATCATTTCCATTATATATAAGAAATTGACATGTGGTCAAATT
11995526 GAA
257 GAA
* * *
11995529 TATTATGCCCTCATATCATAATT-CTGAAAATACCTCTTCTCTTATATTTATTTACTAAATAATC
1 TATTATACCCTTATATCATAATTAC-GAAAATACCTCTTCTCTTATAATTATTTACTAAATAATC
* ** * *
11995593 TCCTATTAAATTATTGGAATACCCTTTCCATTATATGATAAGAAATTGACATATGGCCAAATAGA
65 TCCTATTAAATTACTAAAATACCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATAGA
* * * * * *
11995658 CTATTATTCTCTTATA-CTATAATTACAAAAATATCCCTTCTT-TTATAAATA-TTACCATATAA
130 CTATTATACCCTCATATC-ATAATTACAAAAATATCCCTT-TTCTTATAATTATTTACTAAATAA
** * * * * * *
11995720 TTTCTTATTAAATTACCAAAATATCATTTCCATTATATGATAAGAAGTTGACATGTGGCCAAA-A
193 TCCCTCATGAAATTACAAAAATATCATTTCCATTATAT-ATAAGAAATTGACATGTGGTCAAATT
11995784 GAA
257 GAA
* * *
11995787 CTATTACACCCTTATATCATAATTACGAAAATATCTTTTCTCTTATAATTATTTACTAAATAATC
1 -TATTATACCCTTATATCATAATTACGAAAATACCTCTTCTCTTATAATTATTTACTAAATAATC
*
11995852 TCAT-TTGAAATTA-TCAAAATACCATTTCCATTA
65 TCCTATT-AAATTACT-AAAATACCATTTCCATTA
11995885 ACTATATACA
Statistics
Matches: 504, Mismatches: 84, Indels: 45
0.80 0.13 0.07
Matches are distributed among these distances:
253 1 0.00
254 56 0.11
255 106 0.21
256 36 0.07
257 32 0.06
258 79 0.16
259 162 0.32
260 31 0.06
261 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (259 bp):
TATTATACCCTTATATCATAATTACGAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCT
CCTATTAAATTACTAAAATACCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATAGAC
TATTATACCCTCATATCATAATTACAAAAATATCCCTTTTCTTATAATTATTTACTAAATAATCC
CTCATGAAATTACAAAAATATCATTTCCATTATATATAAGAAATTGACATGTGGTCAAATTGAA
Found at i:11996148 original size:129 final size:129
Alignment explanation
Indices: 11995973--11997366 Score: 820
Period size: 130 Copynumber: 10.7 Consensus size: 129
11995963 CTAACTACAA
* * * * * * * *
11995973 TATTATACCCTTATATCATAACTACAAAAATACCTTT-TTTTATAATTATTTGCTAAATAATCAT
1 TATTATGCCCTCATACCATAATTACGAAAATACCTTTCTCTTATAATTATTTACTAAATAATCCT
* *
11996037 CTATGAAATTATCAAAATGA-CATTTCCATTATATGATAAAAAATTGGCATGTGGCCAAATGGAC
66 CTATGAAATTATCAAAAT-ACCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGAC
** * * * *
11996101 TGCTATGCTCTCATACCATAATTATGAAAATACCTTTCTCTTATAATTATTTATTAAATAATCCC
1 TATTATGCCCTCATACCATAATTACGAAAATACCTTTCTCTTATAATTATTTACTAAATAATCCT
* * *
11996166 CTATTAAATTACCAAAATACCATTTCCATCATATGATAAGAAATTGACCCCTTCTCTTATAATGT
66 CTATGAAATTATCAAAATACCATTTCCATTATATGATAAGAAATTGA--------C-----ATGT
* **
11996231 GTCCAAATTTAC
118 GGCCAAATGGAC
* * * * *
11996243 TATTATGCCCTTATATCATAATTACAAAAATATCTCTTCTCTTATAATTATTTACTAAATAATTC
1 TATTATGCCCTCATACCATAATTACGAAAATACCT-TTCTCTTATAATTATTTACTAAATAATCC
* ** * * * * ** *
11996308 TTTAAAAAAATA-CAAAAATGCC-TTATCCATTATTTGATAAGAAACT-AGCATGTGGTTAAATA
65 TCTATGAAATTATC-AAAATACCATT-TCCATTATATGATAAGAAATTGA-CATGTGGCCAAATG
*
11996370 AAC
127 GAC
* * * * * * **
11996373 TAATATACCCTCATATCATAATTATGAAAAAACTCATTT-TCTTATAATTATTTATTGCATAATC
1 TATTATGCCCTCATACCATAATTACGAAAATAC-C-TTTCTCTTATAATTATTTACTAAATAATC
* * * * * * * * ** **
11996437 CCCCATTAAATTACCAAGACACC-TTGTCCATTATACT-ATTAGAAGTTGATGTGTGGTTAGAAT
64 CTCTATGAAATTATCAAAATACCATT-TCCATTATA-TGATAAGAAATTGACATGTGGCCA-AAT
11996500 -GAC
126 GGAC
* * * * * ** * *
11996503 TATTATGCCCTCGTATCAAAATTATGAAAATAAACATTT-TCTTGCAATTATTTATTAAACAATC
1 TATTATGCCCTCATACCATAATTACGAAAAT--ACCTTTCTCTTATAATTATTTACTAAATAATC
* * * * * **
11996567 CTTTATGTAATTATCAAAATAGC-TAGTCCATTATACGATAAGAAATTGACATGAAGCCAAATGG
64 CTCTATGAAATTATCAAAATACCAT-TTCCATTATATGATAAGAAATTGACATGTGGCCAAATGG
*
11996631 AT
128 AC
* ** * **
11996633 TACTATGCCCTCATGTCATAATTATGAAAATACCTCTT-TCTTATAATTATTTACTAAATAATTT
1 TATTATGCCCTCATACCATAATTACGAAAATACCT-TTCTCTTATAATTATTTACTAAATAATCC
* * * * * * *
11996697 TTTATGGAATTACCAAAATGCCATTTCCATCATATGATAAGAAATTGACATATGGCCAAATAGAC
65 TCTATGAAATTATCAAAATACCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGAC
* *
11996762 TATTATGCCATCATACCATAATTACCAAAATACCTCTTCTCTT-TAATTATTTACTAAATAATCC
1 TATTATGCCCTCATACCATAATTACGAAAATACCT-TTCTCTTATAATTATTTACTAAATAATCC
* * * * *
11996826 -C-------TTA-GAAAATA-CATTTTCCATTATATGGTAAGAAATAGATATGTAGCCAAATGGA
65 TCTATGAAATTATCAAAATACCA-TTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGA
11996881 C
129 C
* * * * * * * *
11996882 TATTAAGCTCTTGA-AGCATAATTACAAAAATACATTT-TCTTTAAAAGTTATTTAATAAATAAT
1 TATTATGC-CCTCATACCATAATTACGAAAATACCTTTCTC-TTATAA-TTATTTACTAAATAA-
* * * * * *
11996945 TGC-CTATTAAATTATGAAAATACCATTTCCATTATATGATAAGATATTGATATGTGACCAAATG
62 TCCTCTATGAAATTATCAAAATACCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATG
11997009 GAC
127 GAC
** * * * * ** *
11997012 TATTATTACCTCATACCATAATTACAAAAATACCCCTTCTCTTAAAAATATTTAAAAAATAATCT
1 TATTATGCCCTCATACCATAATTACGAAAATA-CCTTTCTCTTATAATTATTTACTAAATAATCC
* * * * ** * * * ** *
11997077 TTTATGAAAGTACCAAAATACCCTTAACATTACATGATAAAAAATTGAC-TAGTGTCCTTATGAA
65 TCTATGAAATTATCAAAATACCATTTCCATTATATGATAAGAAATTGACAT-GTGGCCAAATGGA
11997141 C
129 C
* * * * *
11997142 TATTGTTCCCTCATCCCATAATTACGAAAAAACCCCTTCT-TCTATAATTA-TTACTAAATAATC
1 TATTATGCCCTCATACCATAATTACGAAAATA-CCTTTCTCT-TATAATTATTTACTAAATAATC
* * * * * * *
11997205 CT-TATTAAATTATGGAAAA-ACCCTTTCTATTATATGATAAGAAGTCGACATGTGGCGAAATGT
64 CTCTATGAAATTAT-CAAAATACCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATG-
11997268 G-C
127 GAC
* * * * * * * *
11997270 TGTGATACTCACATACCATAATTTCAAAAATATCCTTTCTCCTATAATTATTTA-TGAAATAATC
1 TATTATGCCCTCATACCATAATTACGAAAATA-CCTTTCTCTTATAATTATTTACT-AAATAATC
* *
11997334 CCCTATGAAATTATTAAAATACCATTTCCATTA
64 CTCTATGAAATTATCAAAATACCATTTCCATTA
11997367 AAGATGTACA
Statistics
Matches: 972, Mismatches: 233, Indels: 120
0.73 0.18 0.09
Matches are distributed among these distances:
118 2 0.00
119 6 0.01
120 67 0.07
121 20 0.02
122 3 0.00
128 108 0.11
129 231 0.24
130 405 0.42
131 20 0.02
132 5 0.01
135 1 0.00
137 1 0.00
142 44 0.05
143 59 0.06
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (129 bp):
TATTATGCCCTCATACCATAATTACGAAAATACCTTTCTCTTATAATTATTTACTAAATAATCCT
CTATGAAATTATCAAAATACCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGAC
Found at i:11996640 original size:130 final size:129
Alignment explanation
Indices: 11996506--11996825 Score: 315
Period size: 129 Copynumber: 2.5 Consensus size: 129
11996496 GAATGACTAT
* * *
11996506 TATGCCCTCGTATCAAAATTATGAAAATAAACAT-TTTCTTGCAATTATTTATTAAACAATCCTT
1 TATGCCCTCATATCAAAATTATGAAAAT--ACATCTTTCTTACAATTATTTACTAAACAATCCTT
* * * *
11996570 TATGTAATTATCAAAATAGCTA-GTCCATTATACGATAAGAAATTGACATGAAGCCAAATGGATT
64 TATGGAATTACCAAAAT-GCCATGTCCATCATACGATAAGAAATTGACATGAAGCCAAATGGATT
11996634 AC
128 AC
* * * * * **
11996636 TATGCCCTCATGTCATAATTATGAAAATACCTCTTTCTTATAATTATTTACTAAATAATTTTTTA
1 TATGCCCTCATATCAAAATTATGAAAATACATCTTTCTTACAATTATTTACTAAACAATCCTTTA
* * * * * *
11996701 TGGAATTACCAAAATGCCATTTCCATCATATGATAAGAAATTGACAT-ATGGCCAAATAGACTAT
66 TGGAATTACCAAAATGCCATGTCCATCATACGATAAGAAATTGACATGA-AGCCAAATGGATTAC
* * * ** * * *
11996765 TATGCCATCATACCATAATTACCAAAATACCTCTTCTCTT-TAATTATTTACTAAATAATCC
1 TATGCCCTCATATCAAAATTATGAAAATACATCTT-TCTTACAATTATTTACTAAACAATCC
11996826 CTTAGAAAAT
Statistics
Matches: 159, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
128 7 0.04
129 123 0.77
130 29 0.18
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.36
Consensus pattern (129 bp):
TATGCCCTCATATCAAAATTATGAAAATACATCTTTCTTACAATTATTTACTAAACAATCCTTTA
TGGAATTACCAAAATGCCATGTCCATCATACGATAAGAAATTGACATGAAGCCAAATGGATTAC
Found at i:11998240 original size:128 final size:128
Alignment explanation
Indices: 11997680--11998450 Score: 494
Period size: 131 Copynumber: 6.0 Consensus size: 128
11997670 TTATTATAAC
* * * * * * *
11997680 ATAAGAAATT-AACATGTGGCTAAAAT-GACTATTATGCTCTCAAATCAAAATTACAAAAGTACT
1 ATAAGAAATTGAA-ATGTGG-TCAAATGGACTATTTTAC-CTCATACCATAATTACAAAAATAC-
* * * * ** * *
11997743 CCATT-TCTTATAATTATTTAATAAATAATCTCTTATGAAATTACCAAAATGCCAATTCTATCAT
62 CCCTTCTCTTATAATTATTTACTAAATAATCT-TTATGAAAGTACCAAAATACCCTTTCCATTAT
11997807 ATG
126 ATG
* ** * * * * * *
11997810 GTAAGAAATTGACAA-GTGACCAAATATGAGTATTTTGCCTTCATAACATAATTACGAAAATACA
1 ATAAGAAATTGA-AATGTGGTCAAAT-GGACTATTTTACC-TCATACCATAATTACAAAAATACC
** * ** * * * * **** *
11997874 TATTCTCTTATAATTATTTACTAAATGATCCCCTAGGAAATTATCGAAATGTTTTTTTTCATTAT
63 CCTTCTCTTATAATTATTTACTAAATAAT-CTTTATGAAAGTACCAAAAT-ACCCTTTCCATTAT
11997939 ATG
126 ATG
** * *** ** ** ** **
11997942 ATAAGAAATTGGCATATAAACAAATGGGGTATTGCA-CTTTTGAAGAATAATTACAAAAATACCC
1 ATAAGAAATTGAAATGTGGTCAAATGGACTATTTTACCTCAT--ACCATAATTACAAAAATACCC
* * * * *
11998006 TTTCTCTAATAGTTATTTACTAAATAATATTT-T---A-T--GAAAATACCCTTTCCATTATATG
64 CTTCTCTTATAATTATTTACTAAATAATCTTTATGAAAGTACCAAAATACCCTTTCCATTATATG
* *
11998064 ATAAGAAATTGATATGTGGTCAAATGGACTATTATTACCTTATACCATAATTACAAAAATACCCC
1 ATAAGAAATTGAAATGTGGTCAAATGGACTATT-TTACCTCATACCATAATTACAAAAATACCCC
* * * *
11998129 TTCTTTTATAATTATTTACTAAAAAATCTTTATGAAAGTACCAAAATACCCTTTACATTACATG
65 TTCTCTTATAATTATTTACTAAATAATCTTTATGAAAGTACCAAAATACCCTTTCCATTATATG
* * * * *
11998193 -TAAGAAATTGACATGTGGCCAAGTGGACTATTGTTCCCTCATCCCATAATTACAAAAA-ACCCC
1 ATAAGAAATTGAAATGTGGTCAAATGGACTATT-TTACCTCATACCATAATTACAAAAATACCCC
* * * ** *
11998256 CTCTCTTATAATTATTT-CTAAATAATCCTTTATTAAATTATGAAAATACCCTTTTCATTATATG
65 TTCTCTTATAATTATTTACTAAATAAT-CTTTATGAAAGTACCAAAATACCCTTTCCATTATATG
* * * * * * ** *
11998320 ATAAGAAGTTGAAATGTGGTGAAATGTACTATTATGCCTACGTACCATAATTTTAAAAATATCCC
1 ATAAGAAATTGAAATGTGGTCAAATGGACTATTTTACCT-CATACCATAATTACAAAAATACCCC
* * * *
11998385 TTCTCTTGTAAATATTTACTAAATAATCTCCTATGAAAGTACCAAAATGCCCTTTCCATTA-ATG
65 TTCTCTTATAATTATTTACTAAATAATCT-TTATGAAAGTACCAAAATACCCTTTCCATTATATG
11998449 AT
1 AT
11998451 GTACATTAAA
Statistics
Matches: 493, Mismatches: 122, Indels: 53
0.74 0.18 0.08
Matches are distributed among these distances:
122 82 0.17
123 6 0.01
124 4 0.01
125 1 0.00
126 10 0.02
127 56 0.11
128 92 0.19
129 51 0.10
130 51 0.10
131 112 0.23
132 28 0.06
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.36
Consensus pattern (128 bp):
ATAAGAAATTGAAATGTGGTCAAATGGACTATTTTACCTCATACCATAATTACAAAAATACCCCT
TCTCTTATAATTATTTACTAAATAATCTTTATGAAAGTACCAAAATACCCTTTCCATTATATG
Found at i:11998378 original size:127 final size:129
Alignment explanation
Indices: 11997988--11998412 Score: 437
Period size: 128 Copynumber: 3.4 Consensus size: 129
11997978 CTTTTGAAGA
* * * *
11997988 ATAATTACAAAAATACCCTTTCTCTAATAGTTATTTACTAAATAA-----TAT---TTTATGAAA
1 ATAATTACAAAAATACCCCTTCTCTTATAATTATTTACTAAATAATCCTTTATGAAATTATGAAA
* *
11998045 ATACCCTTTCCATTATATGATAAGAAATTGATATGTGGTCAAATGGACTATTATTACCTTA-TAC
66 ATACCCTTTACATTATATGATAAGAAATTGAAATGTGGTCAAATGGACTATTA-TACC-TACTAC
11998109 C
129 C
* * * **
11998110 ATAATTACAAAAATACCCCTTCTTTTATAATTATTTACTAAAAAAT-CTTTATGAAAGTACCAAA
1 ATAATTACAAAAATACCCCTTCTCTTATAATTATTTACTAAATAATCCTTTATGAAATTATGAAA
* * * * * * *
11998174 ATACCCTTTACATTACATG-TAAGAAATTGACATGTGGCCAAGTGGACTATTGTTCCCT-CATCC
66 ATACCCTTTACATTATATGATAAGAAATTGAAATGTGGTCAAATGGACTATT-ATACCTAC-TAC
11998237 C
129 C
* *
11998238 ATAATTACAAAAA-ACCCCCTCTCTTATAATTATTT-CTAAATAATCCTTTATTAAATTATGAAA
1 ATAATTACAAAAATACCCCTTCTCTTATAATTATTTACTAAATAATCCTTTATGAAATTATGAAA
* * * * *
11998301 ATACCCTTTTCATTATATGATAAGAAGTTGAAATGTGGTGAAATGTACTATTATGCCTACGTACC
66 ATACCCTTTACATTATATGATAAGAAATTGAAATGTGGTCAAATGGACTATTATACCTAC-TACC
** * * *
11998366 ATAATTTTAAAAATATCCCTTCTCTTGTAAATATTTACTAAATAATC
1 ATAATTACAAAAATACCCCTTCTCTTATAATTATTTACTAAATAATC
11998413 TCCTATGAAA
Statistics
Matches: 246, Mismatches: 42, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
122 40 0.16
126 11 0.04
127 56 0.23
128 89 0.36
129 40 0.16
130 10 0.04
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (129 bp):
ATAATTACAAAAATACCCCTTCTCTTATAATTATTTACTAAATAATCCTTTATGAAATTATGAAA
ATACCCTTTACATTATATGATAAGAAATTGAAATGTGGTCAAATGGACTATTATACCTACTACC
Found at i:11999105 original size:257 final size:259
Alignment explanation
Indices: 11998811--11999392 Score: 614
Period size: 257 Copynumber: 2.3 Consensus size: 259
11998801 CCCATATCAA
* ** * * * * *
11998811 AATTATGAAAATATCGATTCTTTTATAATTATTTACTAAATAATCCCTTATGTAATTATCTAAAT
1 AATTATGAAAATACCTCTTTTTTTATAATTATTTACTAAATAATCCCTTATGAAATAACCAAAAT
* **** * *
11998876 ACCATGTCCATTATATGATGAGAAATTAACACCTGGCCAAATGGATTATTACGCCCTCAT-ACCA
66 ACCATGTCCATTATATGATAAGAAATTAACACAAAACCAAATGGACTATTACGCCCT--TGA-AA
* *
11998940 T-AATTACAAATATACC-CATCT-TGTATAATTATTTACTAAATAA-TCCCTTATGAAATTACCA
128 TCAATTACAAAAATACCTCATCTCT-AATAATTATTTACTAAATAATTCCC-TATGAAATTACCA
* *
11999001 AAATGCCA-TTACCATCA-GATGATAAGAAATTGCATAT-AG-CC-AAT-GCACTATTA-TGCCT
191 AAAT-ACATTTACCATCATG-TGATAAGAAATT-CATATGAGACCAAATAG-ACTATTATTACCT
11999059 TAATACCAT
252 T-ATACCAT
* * *
11999068 AATTATGAAAATACCTCTTTTTTTATAACTATTTACTAAATAATCCTTTAGGAAATAACCAAAAT
1 AATTATGAAAATACCTCTTTTTTTATAATTATTTACTAAATAATCCCTTATGAAATAACCAAAAT
* * * * * *
11999133 GCCTTTTCCATTATATGATAAGAAATTGACATAAAACCAAATGGACTATTATGCCCTTGAAATGC
66 ACCATGTCCATTATATGATAAGAAATTAACACAAAACCAAATGGACTATTACGCCCTTGAAAT-C
** * * **
11999198 AATTACAAAAATACCTTTTCTCTAATAATTATTTACTACATAATTCCCTCTGAAATTATGAAAAT
130 AATTACAAAAATACCTCATCTCTAATAATTATTTACTAAATAATTCCCTATGAAATTACCAAAAT
* * *
11999263 ACATTTTCCATTATGTGATAAGAAATTCATATGTGACCAAATAGACTATTATTACCTTATACCAT
195 ACATTTACCATCATGTGATAAGAAATTCATATGAGACCAAATAGACTATTATTACCTTATACCAT
* *
11999328 AATTATAAAAATACCTCTTTTTTTATAATTATTCACTAAATAATCCCTTATGAAA-ATACCAAAA
1 AATTATGAAAATACCTCTTTTTTTATAATTATTTACTAAATAATCCCTTATGAAATA-ACCAAAA
11999392 T
65 T
11999393 TCCCTTTACA
Statistics
Matches: 269, Mismatches: 42, Indels: 25
0.80 0.12 0.07
Matches are distributed among these distances:
255 3 0.01
256 1 0.00
257 120 0.45
258 55 0.20
259 9 0.03
260 75 0.28
261 6 0.02
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (259 bp):
AATTATGAAAATACCTCTTTTTTTATAATTATTTACTAAATAATCCCTTATGAAATAACCAAAAT
ACCATGTCCATTATATGATAAGAAATTAACACAAAACCAAATGGACTATTACGCCCTTGAAATCA
ATTACAAAAATACCTCATCTCTAATAATTATTTACTAAATAATTCCCTATGAAATTACCAAAATA
CATTTACCATCATGTGATAAGAAATTCATATGAGACCAAATAGACTATTATTACCTTATACCAT
Found at i:11999433 original size:130 final size:131
Alignment explanation
Indices: 11998465--11999668 Score: 621
Period size: 130 Copynumber: 9.3 Consensus size: 131
11998455 ATTAAAAGAA
* * * * * * * *
11998465 CCCTTACGAAATTA-CAAAACTACCCATCCCATTATTTGATGAGAAAGTGACATGTC-TCCAAAT
1 CCCTTATGAAATTACCAAAA-TACCCTTTCCATTATATGATAAGAAATTGACAT-ACGGCCAAAT
* *** * * *
11998528 GTACTATTATGCCCTT-ATATTGT-ATTAACAAAAATACCTCTTCTTTTAAAATTATTTACCAAA
64 GGACTATTATGCCCTTAATACCATAATT-ACAAAAATACCTCTTTTTTTATAATTATTTACTAAA
11998591 TAAT
128 TAAT
* * * * * * **
11998595 CTCTTA-GAAAATTA-CAAAAT-GCCTTATCCATTATTTGGTAAGAAACTAACATGTGGCCAAAT
1 CCCTTATG-AAATTACCAAAATACCCTT-TCCATTATATGATAAGAAATTGACATACGGCCAAAT
* * * * * * * * *
11998657 TGACGAATAT-ACCTTCATATCATAATTACAAAAAAAATCC-CGTTTCTTATAATTATTTACTAA
64 GGACTATTATGCCCTTAATACCATAATTAC-AAAAATA-CCTCTTTTTTTATAATTATTTACTAA
11998720 ATAAT
127 ATAAT
** * ** * * * * * * * *
11998725 -TTTGTATTAAATTACCACGACA-CCTTGCCCATTATATTATTAGAAGTCGACCTATGGCCAAAA
1 CCCT-TATGAAATTACCAAAATACCCTT-TCCATTATATGATAAGAAATTGACATACGGCC-AAA
* ** * * ** * ** *
11998788 T-GACTATTGTGCCC-CCATATCAAAATTATGAAAATATCGATTCTTTTATAATTATTTACTAAA
63 TGGACTATTATGCCCTTAATACCATAATTACAAAAATACCTCTTTTTTTATAATTATTTACTAAA
11998851 TAAT
128 TAAT
* * * * * * * *
11998855 CCCTTATGTAATTATCTAAATACCATGTCCATTATATGATGAGAAATTAACA-CCTGGCCAAATG
1 CCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATAC-GGCCAAATG
* * * * * * *
11998919 GATTATTACGCCC-TCATACCATAATTACAAATATACC-CATCTTGTATAATTATTTACTAAATA
65 GACTATTATGCCCTTAATACCATAATTACAAAAATACCTCTTTTTTTATAATTATTTACTAAATA
11998982 AT
130 AT
* * * * * ** *
11998984 CCCTTATGAAATTACCAAAATGCCATTACCATCAGATGATAAGAAATTG-CATATAGCC-AATGC
1 CCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATACGGCCAAATGG
** *
11999047 ACTATTATG-CCTTAATACCATAATTATGAAAATACCTCTTTTTTTATAACTATTTACTAAATAA
66 ACTATTATGCCCTTAATACCATAATTACAAAAATACCTCTTTTTTTATAATTATTTACTAAATAA
11999111 T
131 T
* * * * * ***
11999112 CCTTTAGGAAATAACCAAAATGCCTTTTCCATTATATGATAAGAAATTGACATAAAACCAAATGG
1 CCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATACGGCCAAATGG
* * * *
11999177 ACTATTATGCCCTTGA-A--ATGCAATTACAAAAATACCT-TTTCTCTAATAATTATTTACTACA
66 ACTATTATGCCCTTAATACCAT--AATTACAAAAATACCTCTTT-TTTTATAATTATTTACTAAA
11999238 TAATT
128 TAA-T
* ** ** * *
11999243 CCC-TCTGAAATTATGAAAATACATTTTCCATTATGTGATAAGAAATT--CATATGTGACCAAAT
1 CCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATACG-G-CCAAAT
* ** * *
11999305 AGACTATTATTACCTT-ATACCATAATTATAAAAATACCTCTTTTTTTATAATTATTCACTAAAT
64 GGACTATTATGCCCTTAATACCATAATTACAAAAATACCTCTTTTTTTATAATTATTTACTAAAT
11999369 AAT
129 AAT
* * * * * * **
11999372 CCCTTATGAAAATACCAAAATTCCCTTTACATTACATAATAAGAATTTGACAGGCGGCCAAATGG
1 CCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATACGGCCAAATGG
* * * * ** * * *
11999437 ATTATTGTACCC-TCATTTCATAATTATGAAAAAT-CC-ATTCTTTTATAATTA-TTA-TGAAAT
66 ACTATTATGCCCTTAATACCATAATTA-CAAAAATACCTCTTTTTTTATAATTATTTACT-AAAT
11999497 AAT
129 AAT
** * * * * * ** * * *
11999500 CTGTTATTAAGTTACCAAAATA-CCTTACTCATTATATGATAAGAAGTTGACTTGTGACAAAATC
1 CCCTTATGAAATTACCAAAATACCCTTTC-CATTATATGATAAGAAATTGACATACGGCCAAATG
* * ** *
11999564 TACTATTATGCCC--ACATACCATAATTTCAAAAA-ATCC-CTGCTCTTATAATTATTTACTAAA
65 GACTATTATGCCCTTA-ATACCATAATTACAAAAATA-CCTCTTTTTTTATAATTATTTACTAAA
11999625 TAAT
128 TAAT
** * * * *
11999629 CATTTATTAAAAGTACCAAAATATCCTTTCAATTA-ATGAT
1 CCCTTA-TGAAATTACCAAAATACCCTTTCCATTATATGAT
11999669 GTACATTAAA
Statistics
Matches: 815, Mismatches: 211, Indels: 97
0.73 0.19 0.09
Matches are distributed among these distances:
126 2 0.00
127 41 0.05
128 167 0.20
129 161 0.20
130 359 0.44
131 74 0.09
132 11 0.01
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (131 bp):
CCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATACGGCCAAATGG
ACTATTATGCCCTTAATACCATAATTACAAAAATACCTCTTTTTTTATAATTATTTACTAAATAA
T
Found at i:12000416 original size:132 final size:130
Alignment explanation
Indices: 12000277--12000524 Score: 291
Period size: 130 Copynumber: 1.9 Consensus size: 130
12000267 AATGCCTTAT
* * * * * * **
12000277 CCATTATATTGTAAGAAACTAACATGTGACTAAATTAACTAATATAC-CTTAATATCATATTTTA
1 CCATTATATTATAAGAAACTAACAAGTGACCAAAATAAATAATATACTCTCAA-ATCA-AAATT-
12000341 AAAAAAAAACCCATTTTCTTAAAATTATTTACTAAATAATCCTTTATGAAATTACCATGACACCC
63 AAAAAAAAACCCATTTTCTTAAAATTATTTACTAAATAATCCTTTATGAAATTACCATGACACCC
12000406 TAC
128 TAC
* * * * * * **
12000409 CCATTATATTATAAGAAATTGACAAGTGGCCAAAATAAATATTATGCTCTCGAATCAAAATTACG
1 CCATTATATTATAAGAAACTAACAAGTGACCAAAATAAATAATATACTCTCAAATCAAAATTAAA
** *
12000474 AAAAAATGCATTTTCTTATAATTATTTACTAAATAATCCTTTATGAAATTA
66 AAAAAACCCATTTTCTTAAAATTATTTACTAAATAATCCTTTATGAAATTA
12000525 TCAAAATACC
Statistics
Matches: 96, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
130 49 0.51
131 3 0.03
132 41 0.43
133 3 0.03
ACGTcount: A:0.43, C:0.15, G:0.06, T:0.35
Consensus pattern (130 bp):
CCATTATATTATAAGAAACTAACAAGTGACCAAAATAAATAATATACTCTCAAATCAAAATTAAA
AAAAAACCCATTTTCTTAAAATTATTTACTAAATAATCCTTTATGAAATTACCATGACACCCTAC
Found at i:12000654 original size:129 final size:129
Alignment explanation
Indices: 12000357--12001319 Score: 773
Period size: 130 Copynumber: 7.4 Consensus size: 129
12000347 AAACCCATTT
* * ** * * ** *
12000357 TCTTAAAATTATTTACTAAATAATCCTTTATGAAATTACCATGACACCCTACCCATTATATTATA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCATTTCCATTATATGATA
* * * * * * * *
12000422 AGAAATTGACAAGTGGCCAAAAT-AAATATTATGCTCTCGA-ATCAAAATTACGAAAAAATGCAT
66 AGAAATTGACATGTGGCC-AAATGGACTATTATGCCCTC-ATACCATAATTACG--AAAATACCT
12000485 TT-
127 TTC
* * *
12000487 TCTTATAATTATTTACTAAATAATCCTTTATGAAATTATCAAAATACCATTTTCATTATATGATA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCATTTCCATTATATGATA
* * * ** * *
12000552 AGAAATTGATATGTGCCCAAATGGATTGCTATGCCCTTATACCATAATTGCGAAAATACCTTTC
66 AGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTACGAAAATACCTTTC
* * * * * *
12000616 TCTTATAATTATTTACTAAATAATCCCATATGAAATTATCAAAATGCCAATTCCATCATATCATA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCATTTCCATTATATGATA
* * * * * *
12000681 AGAAATTGACATCTGGCCAAATATGAGTATTTTGCCCTCATACCAGAATTATGAAAATACCTTTT
66 AGAAATTGACATGTGGCCAAAT-GGACTATTATGCCCTCATACCATAATTACGAAAATACC-TTT
12000746 C
129 C
* * * * ****
12000747 TCTTATAATTATTTACTAAAAAATCTCTTAGGAAATTAACAAAATGTTTTTTCCATTATATGATA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCATTTCCATTATATGATA
* * ** * * * * *
12000812 AGAAACTGACATGTAGCCAAATGGACTATTATGCATTTGA-AGCACAATTAC-AGGAAGACCTTT
66 AGAAATTGACATGTGGCCAAATGGACTATTATGC-CCTCATACCATAATTACGA-AAATACC-TT
12000875 TC
128 TC
* * * * ** *
12000877 TCTAATAGTTATTTACAAAATAATCCCTAATGAAATTA-CAAAATTACTTTTTCTATTATATGAT
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAA-TACCATTTCCATTATATGAT
* * * ** * * *
12000941 AAGAAATTGATATGTGGCCAAAGGGACTACTATTACCTCATGCTATAATTACG-AAATACCCATT
65 AAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTACGAAAATA-CCTTT
12001005 C
129 C
* * * * * *
12001006 ACTTATAATT-TGTACTAAATAATCCC-TATGAAAGTACCAAAA-ACCCTTTACATTACATGATA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCATTTCCATTATATGATA
* * * * * * * * *
12001068 ATAAATTGACATGTGGCCAAATGGACAATTGTTCCCTCAT-CTCATAATGAAGAAAAAACCCCTG
66 AGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATAC-CATAATTACGAAAATA-CCTTT
12001132 C
129 C
* * * * * * *
12001133 TCTTGTAATTA-TTAGTAAATAATTCCTTATTAAATTACCAAAATATCATTCCCATTATATGAAA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCATTTCCATTATATGATA
* * * * ** * *
12001197 AGAAGTGGACATGTGGCGAAATAGACTATTACACCCTCATAACATAATTTCGAAAATATACC-TT
66 AGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTACG-AAA-ATACCTTT
12001261 C
129 C
* *
12001262 TCTTATAATTATTTACTAAATAATCTCTTATAAAATTACCAAAATACCATTTCCATTA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCATTTCCATTA
12001320 AAGATGTACA
Statistics
Matches: 657, Mismatches: 155, Indels: 42
0.77 0.18 0.05
Matches are distributed among these distances:
125 1 0.00
126 55 0.08
127 37 0.06
128 42 0.06
129 167 0.25
130 274 0.42
131 81 0.12
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.34
Consensus pattern (129 bp):
TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCATTTCCATTATATGATA
AGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTACGAAAATACCTTTC
Found at i:12001872 original size:129 final size:129
Alignment explanation
Indices: 12001331--12003686 Score: 841
Period size: 130 Copynumber: 18.1 Consensus size: 129
12001321 AGATGTACAT
* * ** * * * * *
12001331 TAAATGAATCC-CTTATGAAATTACAAAACTACCCATCCCATTCTTTGATTAGAAACTGACATGT
1 TAAAT-AATCCTC-TATAAAATTACAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGT
* * ** * * * * * *
12001395 GTCC-AATGAACAATTATGCCATTACATCGTAATTACAAAAATACCTTTTCTCTTATAGTTATTT
64 GACCAAATGGACTCTTATGCCATCATAACATAATTACAAAAATACC-CTTCTCTTATAATTATTT
12001459 AC
128 AC
* * * * *
12001461 TAAATAATCATTTA-AACAATTACAAAAATGCCTTATCCATTATATGATAAGAAATTGACATATG
1 TAAATAATCCTCTATAA-AATTACAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTG
* * ** * * ** *** * *
12001525 CCCAAATTGACTAATATACCTTCATATTATAATTACAAAAAATATGTTTTTTCTTATAATAATTT
65 ACCAAATGGACTCTTATGCCATCATAACATAATTAC-AAAAATA-CCCTTCTCTTATAATTATTT
*
12001590 GC
128 AC
* * * * * * * * * * *
12001592 TAGATAATACC-CCATGAAATAACCAAGACACCTTGTCCATTATATTATAAGAAGTTGACCTGTG
1 TAAATAAT-CCTCTATAAAATTACAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTG
* * * * * * *
12001656 GCTAAAAT-GACTATTATGCCCTTA-AATCACAATTA-AGAAAATACCCATTTTCTTATAATTAT
65 AC-CAAATGGACTCTTATGCCATCATAA-CATAATTACA-AAAATACCC-TTCTCTTATAATTAT
12001718 TTAC
126 TTAC
* ** ** *
12001722 TAAATAATCCTCTATGAAATTATTAAAATACCCCTTCCATTATATGATAAGAAATTGGCATGTGA
1 TAAATAATCCTCTATAAAATTACAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTGA
** * * *
12001787 CCAAATGGACTCTTATGCCCCCATACCATATTTATAAAAATACCCTTCTCTTATAATTATTTAC
66 CCAAATGGACTCTTATGCCATCATAACATAATTACAAAAATACCCTTCTCTTATAATTATTTAC
* * * * * * *
12001851 TAAATAA-CTTCCTATAAAATTACAAAAATGCCATTTCTATCATATGATAAAAAATTGACATGCG
1 TAAATAATCCT-CTATAAAATTACAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTG
* * * * * * * *
12001915 GCCAAATATGAGTACTT-TGCCTTTATAACATAATAACGAAAATACCTCTTCTTTTATAATTATT
65 ACCAAAT-GGACT-CTTATGCCATCATAACATAATTACAAAAATACC-CTTCTCTTATAATTATT
12001979 TAC
127 TAC
* * * *
12001982 AAAATAAT-CTCTTAAAAAATTACCAAAAT-GCTTATTCCATTATATGATAAGAAATTGACATGT
1 TAAATAATCCTC-TATAAAATTACAAAAATACCTT-TTCCATTATATGATAAGAAATTGACATGT
* * * * * * * *
12002045 -AGCCAAATTGACTATTATACGATCA-AAGCACAATTACAAAAATACCATT-TCCTAATAGTTAT
64 GA-CCAAATGGACTCTTATGCCATCATAA-CATAATTACAAAAATACCCTTCT-CTTATAATTAT
12002107 TTAC
126 TTAC
* * *
12002111 TAACTAATCCTCTATGAAATTATAAAAATAACCATTTTCCATTATATGATAAGAAATTG--ATGT
1 TAAATAATCCTCTATAAAATTACAAAAAT-ACC-TTTTCCATTATATGATAAGAAATTGACATGT
* * * ** * * * ** * * *
12002174 GGCCAAATGGATTATTAATATC-TTATACCATAAATATGAAAATACCTATTTTCTAATAATTATT
64 GACCAAATGGACTCTT-ATGCCATCATAACATAATTACAAAAATACC-CTTCTCTTATAATTATT
12002238 TA-
127 TAC
* * * * * ** * *
12002240 TAGAATAATCAC-CTTTGAAAGTACCAAAATATCC-TTTACATTACGTGATAATAAATTGACTTG
1 TA-AATAATC-CTCTATAAAATTACAAAAATA-CCTTTTCCATTATATGATAAGAAATTGACATG
* * * * * * ** * *
12002303 TGGCCAAATGGACTATTGTCCCCTTATCCCAGAATTACAAGAAA-A-AC--CTCTTATAATTA-T
63 TGACCAAATGGACTCTTATGCCATCATAACATAATTACAA-AAATACCCTTCTCTTATAATTATT
12002363 TAC
127 TAC
* * * *
12002366 TAAATAATCCCCTACT-AAATTACCAAAATACCTTTTTCATTATATGATAAGAAGTTGACATGTG
1 TAAATAATCCTCTA-TAAAATTACAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTG
** * * ** * * * * **** * *
12002430 ATGAAATTGACTATTACACCCTCATATCATAATTTCAAAAGTTTTATATCTTTTATAATTGTTTA
65 ACCAAATGGACTCTTATGCCATCATAACATAATTACAAAAATACCCT-TCTCTTATAATTATTTA
*
12002495 T
129 C
* * *
12002496 TAAATAAT-CTCCTATGAAATTACCAAAATACAC-TTTCAATTAATAATGTACATTAAAAGAATC
1 TAAATAATCCT-CTATAAAATTACAAAAATAC-CTTTTCCATT-AT-ATG---A-T--AAGAA--
* * * * * * * * * * * *
12002559 CTTTATGAAATGACATATGTCCAAATGTACTATTATGCCCTTATATCGTAATTATAAAATTACTT
54 --AT-TGACATG-----TGACCAAATGGACTCTTATGCCATCATAACATAATTACAAAAATAC-C
12002624 CTTCTCTTATAATTATTTAC
110 CTTCTCTTATAATTATTTAC
* * * * * * *
12002644 TAAATAATCCT-TTTAAAAATTACAAAAAAACCTTATCCATTACATGATAAGAAACTAACATTTG
1 TAAATAATCCTCTAT-AAAATTACAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTG
* * * * * ** *
12002708 GCCAAATTGACTAATATAT-CC-TCACATCATAATTATGAAAATATCCCTT-TTTTATAATTATT
65 ACCAAATGGACT-CT-TATGCCATCATAACATAATTACAAAAATA-CCCTTCTCTTATAATTATT
12002770 TAC
127 TAC
* * * * * * * * * * * * **
12002773 CAAATAATCAC-CCATTAAATTACCAAGACACCCTGTCCACTATATTATAAAAAATTTACACATG
1 TAAATAATC-CTCTATAAAATTACAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTG
* ** * * ** *
12002837 GCCAAAAT-GACTAGTATGCTC-TCATATCAAAATTATGAAAATATCCCTTCTCTTATGATTATT
65 ACC-AAATGGACTCTTATGC-CATCATAACATAATTACAAAAATA-CCCTTCTCTTATAATTATT
*
12002900 TAT
127 TAC
** * *
12002903 TAAATAAT-CTCCTATTTAATTATCCAAAA-A------CCATTATATGATAAAAAATTGACATGT
1 TAAATAATCCT-CTATAAAATTA-CAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGT
* * * * ** * * * *
12002960 GACTAAATGAACTAC-TATGCCCTCATACCATAATTATGAAAATAACCTTTTCATAAAATTATTT
64 GACCAAATGGACT-CTTATGCCATCATAACATAATTACAAAAATACCCTTCTCTTATAATTATTT
12003024 AC
128 AC
* * * * * * * * *
12003026 CAAATAATCCTTTATGATATTACCAAAATGCCATTTTTCATCATATAATAAGAAATTGACATGTG
1 TAAATAATCCTCTATAAAATTACAAAAATACC-TTTTCCATTATATGATAAGAAATTGACATGTG
* * * * * * * ** *
12003091 GCCAAATAGAGTATTTTGCCCAT-TTACCATAATTATGAAAACACCTCTTCTCTTATAATTATTT
65 ACCAAATGGACTCTTATG-CCATCATAACATAATTACAAAAATACC-CTTCTCTTATAATTATTT
*
12003155 CC
128 AC
* ** *** ***
12003157 TAAATAATCCCCTAGGAAATTTTGAAAATGTTTTTTTCCATTATATGATAAGAAATTGACATGT-
1 TAAATAATCCTCTATAAAATTACAAAAAT-ACCTTTTCCATTATATGATAAGAAATTGACATGTG
* * * * * * * *
12003221 AGGCGAATGGACTATTATG-CATTCA-AAGCACAATTACAAAAATATCCTTTTTCTAACAATTAT
65 A-CCAAATGGACTCTTATGCCA-TCATAA-CATAATTACAAAAATA-CCCTTCTCTTATAATTAT
*
12003284 TTGC
126 TTAC
* ** * * * *
12003288 TAAATAATCC-CTTATGAAATTATGAAAATACCATTTCCATTATATGATAAAAAATTGATATATG
1 TAAATAATCCTC-TATAAAATTACAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTG
* * * * * * *
12003352 GCCAAATAGACTATTATTACC-TCACACCATAATTACTAAAATACCCCTTCTCTTATAATTATTT
65 ACCAAATGGACTCTTA-TGCCATCATAACATAATTACAAAAATA-CCCTTCTCTTATAATTATTT
12003416 AC
128 AC
* * * * * * * *
12003418 TAAATAAACCCCTTATAAAAGTACCAAAATACCCTTTACATTACATGATAAGAAAATT-A-ATAT
1 TAAATAATCCTC-TATAAAATTACAAAAATACCTTTTCCATTATATGATAAG-AAATTGACATGT
* * * * * * * *
12003481 CAAGCCAAATGGACTATTGTTTCC-TCAT-CCTATAATTATGAAAAATGCCATTCTCTTATAATT
64 -GA-CCAAATGGACTCTT-ATGCCATCATAAC-ATAATTA-CAAAAATACCCTTCTCTTATAATT
12003544 A-TTAC
124 ATTTAC
* * * * * *
12003549 TAAATTATCC-CTTATTAAATTACCAAAATACCCATCTT--ATTATATGATAAGAAGTTAACATG
1 TAAATAATCCTC-TATAAAATTACAAAAATA-CC-TTTTCCATTATATGATAAGAAATTGACATG
* * * ** * * * *
12003611 TGACGAAATTGACTATTACACCCTCATACCATAATTTCAAAAATGTCCCTTCTCTTATAATTATT
63 TGACCAAATGGACTCTTATGCCATCATAACATAATTACAAAAAT-ACCCTTCTCTTATAATTATT
12003676 TAC
127 TAC
*
12003679 TGAATAAT
1 TAAATAAT
12003687 TTGCTATGAA
Statistics
Matches: 1688, Mismatches: 408, Indels: 260
0.72 0.17 0.11
Matches are distributed among these distances:
122 6 0.00
123 35 0.02
124 59 0.03
125 76 0.05
126 13 0.01
127 3 0.00
128 35 0.02
129 346 0.20
130 541 0.32
131 393 0.23
132 66 0.04
133 5 0.00
135 5 0.00
136 1 0.00
138 5 0.00
140 5 0.00
142 2 0.00
143 7 0.00
146 3 0.00
147 4 0.00
148 74 0.04
149 4 0.00
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.35
Consensus pattern (129 bp):
TAAATAATCCTCTATAAAATTACAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTGA
CCAAATGGACTCTTATGCCATCATAACATAATTACAAAAATACCCTTCTCTTATAATTATTTAC
Found at i:12002269 original size:130 final size:128
Alignment explanation
Indices: 12001692--12002319 Score: 307
Period size: 129 Copynumber: 4.8 Consensus size: 128
12001682 TCACAATTAA
* * * ** * *
12001692 GAAAATACCCATTTTCTTATAATTATTTACTAAATAATCCTCTATGAAATTATTAAAATACCCCT
1 GAAAATA-CCATTTCCTAATAATTATTTACTAAATAATCCTCTATGAAAGTACAAAAATAACCTT
* * * * * ** ** **
12001757 TCCATTATATGATAAGAAATTGGCATGTGACCAAATGGACTCTT-ATGCCCCCATACCATATTTA
65 TACATTACATGATAAGAAATTGAC-TGTGGCCAAATGGACTATTAAT-ATCTTATACCATAAATA
12001821 T
128 T
* * * * * * *
12001822 AAAAATACC-CTTCTCTTATAATTATTTACTAAATAA-CTTCCTATAAAATTACAAAAAT-GCCA
1 GAAAATACCATTTC-CTAATAATTATTTACTAAATAATCCT-CTATGAAAGTACAAAAATAACC-
* * * * * * ** *
12001884 TTT-CTATCATATGATAAAAAATTGACATGCGGCCAAATATGAGTACTT--TGCCTTTATAACAT
63 TTTAC-ATTACATGATAAGAAATTGAC-TGTGGCCAAAT-GGACTA-TTAATATC-TTATACCAT
*
12001946 -AATAAC
123 AAAT-AT
* * * ** * * * *
12001952 GAAAATACC-TCTTCTTTTATAATTATTTACAAAATAAT-CTCTTAAAAAATTACCAAAAT-GCT
1 GAAAATACCAT-TTC-CTAATAATTATTTACTAAATAATCCTC-TATGAAAGTACAAAAATAACC
* * * * * * * *
12002014 TATTCCATTATATGATAAGAAATTGACATGTAGCCAAATTGACTATT-ATA-CGATCAAAGCACA
63 T-TTACATTACATGATAAGAAATTGAC-TGTGGCCAAATGGACTATTAATATC--TTATACCATA
* *
12002077 ATTAC
124 AATAT
* * * * *
12002082 AAAAATACCATTTCCTAATAGTTATTTACTAACTAATCCTCTATGAAATTATAAAAATAACCATT
1 GAAAATACCATTTCCTAATAATTATTTACTAAATAATCCTCTATGAAAGTACAAAAATAACC--T
* * *
12002147 TTCCATTATATGATAAGAAATTGA-TGTGGCCAAATGGATTATTAATATCTTATACCATAAATAT
64 TTACATTACATGATAAGAAATTGACTGTGGCCAAATGGACTATTAATATCTTATACCATAAATAT
* * * *
12002211 GAAAATACCTATTTTCTAATAATTATTTA-TAGAATAATCAC-CTTTGAAAGTACCAAAATATCC
1 GAAAATACC-ATTTCCTAATAATTATTTACTA-AATAATC-CTCTATGAAAGTACAAAAATAACC
* *
12002274 TTTACATTACGTGATAATAAATTGACTTGTGGCCAAATGGACTATT
63 TTTACATTACATGATAAGAAATTGAC-TGTGGCCAAATGGACTATT
12002320 GTCCCCTTAT
Statistics
Matches: 391, Mismatches: 79, Indels: 56
0.74 0.15 0.11
Matches are distributed among these distances:
128 28 0.07
129 141 0.36
130 116 0.30
131 104 0.27
132 2 0.01
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (128 bp):
GAAAATACCATTTCCTAATAATTATTTACTAAATAATCCTCTATGAAAGTACAAAAATAACCTTT
ACATTACATGATAAGAAATTGACTGTGGCCAAATGGACTATTAATATCTTATACCATAAATAT
Found at i:12003404 original size:261 final size:260
Alignment explanation
Indices: 12002933--12003430 Score: 601
Period size: 261 Copynumber: 1.9 Consensus size: 260
12002923 TATCCAAAAA
* * * **
12002933 CCATTATATGATAAAAAATTGACATGTGACTAAATGAACTACTATGCCCTCATACCATAATTATG
1 CCATTATATGATAAAAAATTGACATGTGACTAAATGAACTACTATGCACTCAAACCACAATTACA
* * *
12002998 AAAATAACCTTTTCATAAAATTATTTACCAAATAATCCTTTATGATATTACCAAAATGCCATTTT
66 AAAATAACCTTTTCATAAAATTATTTACCAAATAATCCCTTATGAAATTACCAAAATACCATTTT
* * * * * *
12003063 TCATCATATAATAAGAAATTGACATGTGGCCAAATAGAGTATTTTGCCCATTTACCATAATTATG
131 CCATCATATAATAAAAAATTGACATATGGCCAAATAGACTATTTTACCCA-TCACCATAATTATG
* * *
12003128 AAAACACCTCTTCTCTTATAATTATTTCCTAAATAATCCCCTAGGAAATTTTGAAAATGTTTTTT
195 AAAACACCCCTTCTCTTATAATTATTTACTAAATAAACCCCTAGGAAATTTTGAAAATGTTTTTT
12003193 T
260 T
* * * * * * *
12003194 CCATTATATGATAAGAAATTGACATGTAGGC-GAATGGACTATTATGCATTCAAAGCACAATTAC
1 CCATTATATGATAAAAAATTGACATGT-GACTAAATGAACTACTATGCACTCAAACCACAATTAC
* * * **
12003258 AAAAATATCCTTTTTC-TAACAATTATTTGCTAAATAATCCCTTATGAAATTATGAAAATACCA-
65 AAAAATAACC-TTTTCATAA-AATTATTTACCAAATAATCCCTTATGAAATTACCAAAATACCAT
* * *
12003321 TTTCCATTATATGATAAAAAATTGATATATGGCCAAATAGACTATTATTACCTCA-CACCATAAT
128 TTTCCATCATATAATAAAAAATTGACATATGGCCAAATAGACTATT-TTACC-CATCACCATAAT
*
12003385 TACT-AAAATACCCCTTCTCTTATAATTATTTACTAAATAAACCCCT
191 TA-TGAAAACACCCCTTCTCTTATAATTATTTACTAAATAAACCCCT
12003431 TATAAAAGTA
Statistics
Matches: 198, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
261 148 0.75
262 48 0.24
263 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (260 bp):
CCATTATATGATAAAAAATTGACATGTGACTAAATGAACTACTATGCACTCAAACCACAATTACA
AAAATAACCTTTTCATAAAATTATTTACCAAATAATCCCTTATGAAATTACCAAAATACCATTTT
CCATCATATAATAAAAAATTGACATATGGCCAAATAGACTATTTTACCCATCACCATAATTATGA
AAACACCCCTTCTCTTATAATTATTTACTAAATAAACCCCTAGGAAATTTTGAAAATGTTTTTTT
Found at i:12004033 original size:130 final size:129
Alignment explanation
Indices: 12003770--12004070 Score: 293
Period size: 130 Copynumber: 2.3 Consensus size: 129
12003760 ACTATCAATC
* * * * * * * *
12003770 CCATTATTTGATGAGAAAATGACATGTGTCCAAATGTACTATTATGCTCTTATATCGTAATTACA
1 CCATTATATGATAAGAAACTAACATGTGGCCAAAT-TACTAATATACCCTTATATCGTAATTACA
* **** * *
12003835 AAAACACCTCTTCTCTTATAATGATTTACTAAATAATCTTTTAAAAATTTATAAAAATGCCTTAT
65 AAAACACCTCTTCTCTTATAATAATTTACTAAATAATCCCACAAAAATTTACAAAAATGCCCTAT
*
12003900 CCATTGTATGATAAGAAACTAACATGTGGCCAAATTAACTAATATACCCTTATATCGTAATTACA
1 CCATTATATGATAAGAAACTAACATGTGGCCAAATT-ACTAATATACCCTTATATCGTAATTACA
* * * *
12003965 ATAAA-ACC-CTTTTTCTTATAATAATTTACTAAATAATCCCACAAGAAA-TTACCAAGATTCCC
65 A-AAACACCTC-TTCTCTTATAATAATTTACTAAATAATCCCACAA-AAATTTACAAAAATGCCC
*
12004027 TGT
127 TAT
* ** * *
12004030 CCATTATATTATAAGAAGTTGACATGTAGCCAAATTGACTA
1 CCATTATATGATAAGAAACTAACATGTGGCCAAATT-ACTA
12004071 TTATGTCCTC
Statistics
Matches: 139, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
129 2 0.01
130 131 0.94
131 6 0.04
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (129 bp):
CCATTATATGATAAGAAACTAACATGTGGCCAAATTACTAATATACCCTTATATCGTAATTACAA
AAACACCTCTTCTCTTATAATAATTTACTAAATAATCCCACAAAAATTTACAAAAATGCCCTAT
Found at i:12004583 original size:129 final size:128
Alignment explanation
Indices: 12003894--12004830 Score: 582
Period size: 130 Copynumber: 7.3 Consensus size: 128
12003884 TATAAAAATG
* * * ** * ** * *
12003894 CCTTATCCATTGTATGATAAGAAACTAACATGTGGCCAAATTAACTAATATACCCTTATATCGTA
1 CCTT-TCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGTCC--ACATCATA
* * * * * *
12003959 ATTACAATAAA-ACCCTTT-TTCTTATAATAATTTACTAAATAATCCCAC-AAGAAATTACCAAG
63 ATTATAA-AAATGCCCTTTCTT-TAATAATTATTTACTAAATAATCCC-CTATGAAATTACCAAA
*
12004021 ATTC
125 ATAC
* * * * * * * *
12004025 CCTGTCCATTATATTATAAGAAGTTGACATGTAGCCAAATTGACTATTATGTCCTCAAATCAAAA
1 CCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGT-C-CACATCATAA
* * * * * * ** *
12004090 CTATGAATATACCCCATTTC-TT-ATAATTATTTACCAAGTAATCCTTTATGAAATTATCAAAAT
64 TTATAAAAAT-GCCC-TTTCTTTAATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAAT
12004153 AC
127 AC
* * * *
12004155 CCTTTCTATTGTATTATAAGAAATTGACATGTGGCCAAATGGACTACTATGTCCTCATACCATAA
1 CCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGTCCACAT--CATAA
* ** * * * * *
12004220 TTATGAAAATG-CCTTTCTTTTGTAATTATTTACTAAA-AATCTCTTATGAAATTGCAAAAAT-G
64 TTATAAAAATGCCCTTTCTTTAATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAC
* * * * *
12004282 CCATTCCATCATATGATAAGAAATTGACATGTGGCCAAA---AATACTTTGCCCACATACTATAA
1 CCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGTCCACAT-C-ATAA
* * * * * * * *
12004344 TTATGAAAAT-ACCTCTTCTCTGATAGTTATTTACTAAATAATCCCCTAGGAAATTGCCAAAATG
64 TTATAAAAATGCCCT-TTCTTTAATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA
12004408 C
128 C
** ** * * *** *
12004409 TTTTTTGATTATATGATAAGAAATTGACATGTAGCCGAATGGACTACTATGTCTTTATGCACAAT
1 CCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGTCCACAT-CATAAT
** * * **
12004474 TCCAAAAATGCCCTTTCTTTAATAGTTATTTACAAAATAATCCCCTATGAAATTATAAAAATAC
65 TATAAAAATGCCCTTTCTTTAATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAC
* * * * *
12004538 CCTTTCCATTATATGATAAGAAATTCATATGTGGCCAAATAGACTATTAT-TACCTCAAATCATA
1 CCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGT--C-CACATCATA
* * ** * *
12004602 ATTATAAAATTACCCACTCTTTAATAATTATTTACTAAATAATCACCTATGAAAGTACCAAAATA
63 ATTATAAAAATGCCCTTTCTTTAATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA
*
12004667 T
128 C
* * * * *
12004668 CCTTTACATTAACATGATAAGAAATTGACATGTGGCCAAATGGACTATTCT-TTCATCATCACAA
1 CCTTTCCATT-ATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGTCCA-CAT--C-A
* * * * * *
12004732 AAATACAAAAAAAAAGCCC-TTCTCTT-ATAATTA-TTACTAAATAATCCCCCATCAAATTACCA
61 TAAT--TATAAAAATGCCCTTTCT-TTAATAATTATTTACTAAATAATCCCCTATGAAATTACCA
12004794 AAATAC
123 AAATAC
* * *
12004800 CTTTTCTATTATATG---AGAAGTTGACATGTGG
1 CCTTTCCATTATATGATAAGAAATTGACATGTGG
12004831 AGAAACTTAT
Statistics
Matches: 626, Mismatches: 149, Indels: 65
0.75 0.18 0.08
Matches are distributed among these distances:
123 1 0.00
124 29 0.05
125 19 0.03
126 20 0.03
127 69 0.11
128 44 0.07
129 110 0.18
130 217 0.35
131 51 0.08
132 46 0.07
133 10 0.02
134 10 0.02
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.34
Consensus pattern (128 bp):
CCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGTCCACATCATAATT
ATAAAAATGCCCTTTCTTTAATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAC
Found at i:12005462 original size:128 final size:127
Alignment explanation
Indices: 12004999--12006148 Score: 650
Period size: 130 Copynumber: 8.9 Consensus size: 127
12004989 TTATTTGACG
* * * * * ***
12004999 AGAAAATGACATGTGTCCAAATGTACTA-TATGCCTTTATATGGTAATTACAAAAATACCTATTC
1 AGAAATTGACATGTGGCCAAATGAACTACTATGCCCTCATACCATAATTACAAAAATACC-ATTC
* * ** * * *
12005063 TCTTATAATTATTTGCTAGATAAT--TTTTTAAAAAATAATAAAAATACCTTATCCATTATATGA
65 T-TTATAATTATTTACTAAATAATCCCCTTT---AAATTATCAAAATACCTTTTCCATTATATGA
12005126 -A
126 TA
* * * ** *
12005127 TAGAAACTAACATGTGGCCAAATTG-ACTAATATATCCTCATACCATAGTTACAAAAATACCCAT
1 -AGAAATTGACATGTGGCCAAA-TGAACTACTATGCCCTCATACCATAATTACAAAAATA-CCAT
* * * * * * *
12005191 TTTCTTATAATTATTTAATAAATAATCCCCCTTTAAATTACCAAGACACCTTGTCCATTATATTA
63 TCT-TTATAATTATTTACTAAATAAT-CCCCTTTAAATTATCAAAATACCTTTTCCATTATATGA
12005256 TA
126 TA
* * * * * * * * * * *
12005258 AGAAGTTGAAATGTGGCCAAAAGGACTAGTATG-CCTTATACCAAAAGTATAAAAATGCCCTTTC
1 AGAAATTGACATGTGGCCAAATGAACTACTATGCCCTCATACCATAATTACAAAAAT-ACCATTC
* * *
12005322 TCTTATAATTATTTACTAAATAATCCCCTTTGTAATTATCAAAATACC-TGTCTATTATATGATA
65 T-TTATAATTATTTACTAAATAATCCCCTTT-AAATTATCAAAATACCTTTTCCATTATATGATA
* *
12005386 AGAAATTGACATGTGACCAAATGAACTACTATGCCCTCATACAATAATTACAAAAATACCATTCT
1 AGAAATTGACATGTGGCCAAATGAACTACTATGCCCTCATACCATAATTACAAAAATACCATTCT
* * ** * * * *
12005451 TTGATACTTATTCACTAAATAAT-CCCTTATGAAATT-TCAAAAATGGCATTTCCATCAAATGAA
66 TT-ATAATTATTTACTAAATAATCCCCTT-T-AAATTATC-AAAATACCTTTTCCATTATATGAT
12005514 A
127 A
* * * * * * * *
12005515 AGAAA-TGACATGT-GCCTCAAT-AGAGTATTTTG-CCTCAAACCATAATTACGAAAATGCATAT
1 AGAAATTGACATGTGGCC-AAATGA-ACTACTATGCCCTCATACCATAATTACAAAAATAC-CAT
* **** * * *
12005576 TCTCTTATAATTATTTCCTAAATAATTTTATTAAAAATTACCAAAATA-TTATTTCCATTATATG
63 TCT-TTATAATTATTTACTAAATAATCCCCTT-TAAATTATCAAAATACCT-TTTCCATTATATG
12005640 ATA
125 ATA
* ** * * * ** * *
12005643 AGAAATTGACATGTAGCTGAATGGAA-TATTATGCCATCAAAGTACAATTACAAAAATGCCTATT
1 AGAAATTGACATGTGGCCAAAT-GAACTACTATGCCCTCATACCATAATTACAAAAATACC-ATT
* * * *
12005707 CTTTAGTAGTTATGTT-CTAAATAATCCCCTATAAAATTTTGAAAATACCTTTTTCCATTATATG
64 CTTTA-TAATTAT-TTACTAAATAATCCCCT-TTAAATTATCAAAATACC-TTTTCCATTATATG
12005771 ATA
125 ATA
* ** ** *
12005774 AGAAATTGATATGTGGCCAAATGAACTACTATAACCTCATACCATAATTATGAAAATACCCATTT
1 AGAAATTGACATGTGGCCAAATGAACTACTATGCCCTCATACCATAATTACAAAAATA-CCATTC
* * * * *
12005839 TCTTATAATTATTTACTAAATAAT-CCC------TTATGAAAGTACCATTTACATTACATGATA
65 T-TTATAATTATTTACTAAATAATCCCCTTTAAATTATCAAAATACCTTTTCCATTATATGATA
* * * *
12005896 AGAAATTGACATGTGGCCAATTGGACTA-TCATTCCCTCAT-CCTATAA-TACTAAGAAAAAGCC
1 AGAAATTGACATGTGGCCAAATGAACTACT-ATGCCCTCATACC-ATAATTAC-AA-AAATA-CC
* *
12005958 ATTCTTTTATAATTA-TTACTAAATAATCCCCTATTAAATTACCAAAATACCCTTTCCATTATAT
61 ATTC-TTTATAATTATTTACTAAATAATCCCCT-TTAAATTATCAAAATACCTTTTCCATTATA-
12006022 TG-TA
123 TGATA
* ** * ** * * * ** * * *
12006026 AGAAGTTGACATGTGGTAAAATTG-ACTATTACACCTTTATATCATAATTTTGAAAATTTCCCTT
1 AGAAATTGACATGTGGCCAAA-TGAACTACTATGCCCTCATACCATAA-TTACAAAAATACCATT
* * *
12006090 CTCTTATAATTATTTGCTAAATAATCTCCTTTGAAATTA-CATAAATACCCTTTCCATTA
64 CT-TTATAATTATTTACTAAATAATCCCCTTT-AAATTATCA-AAATACCTTTTCCATTA
12006149 GTGATGTACA
Statistics
Matches: 795, Mismatches: 166, Indels: 119
0.74 0.15 0.11
Matches are distributed among these distances:
121 5 0.01
122 64 0.08
123 32 0.04
124 1 0.00
127 33 0.04
128 152 0.19
129 158 0.20
130 251 0.32
131 89 0.11
132 7 0.01
133 3 0.00
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (127 bp):
AGAAATTGACATGTGGCCAAATGAACTACTATGCCCTCATACCATAATTACAAAAATACCATTCT
TTATAATTATTTACTAAATAATCCCCTTTAAATTATCAAAATACCTTTTCCATTATATGATA
Found at i:12005729 original size:130 final size:129
Alignment explanation
Indices: 12005043--12005866 Score: 352
Period size: 128 Copynumber: 6.4 Consensus size: 129
12005033 TTTATATGGT
* * * * *** * * **
12005043 AATTACAAAAATACCTATTCTCTTATAATTATTTGCTAGATAATTTTTTAAAAAATAATAAAAAT
1 AATTACAAAAATGCATATTCTCTTATAATTATTTCCTAAATAA-TCCCTATAAAATTACCAAAAT
* * * * * *
12005108 ACCTTA--TCCATTATATGA-ATAGAAACTAACATGTGGCC-AAATTGACTAATATAT-CCTCAT
65 A-CTTATTTCCATTATATGATA-AGAAATTGACATGT-GCCTCAATAGAAT-AT-TATGCCTCAA
*
12005168 ACCAT
125 ACCAC
* * ** * ** * *
12005173 AGTTACAAAAATACCCATTTTCTTATAATTATTTAATAAATAATCCCCCT-TTAAATTACCAAGA
1 AATTACAAAAATGCATATTCTCTTATAATTATTTCCTAAATAAT--CCCTATAAAATTACCAAAA
* * * * * * * * * * * *
12005237 CACCT-TGTCCATTATATTATAAGAAGTTGAAATGTGGC-CAAAAGGACTAGTATGCCTTATACC
64 TACTTATTTCCATTATATGATAAGAAATTGACATGTGCCTCAATA-GAATATTATGCCTCAAACC
*
12005300 AA
128 AC
* * * * * ** *
12005302 AAGTATAAAAATGCCCT-TTCTCTTATAATTATTTACTAAATAATCCCCTTTGTAATTATCAAAA
1 AATTACAAAAATG-CATATTCTCTTATAATTATTTCCTAAATAAT-CCCTATAAAATTACCAAAA
* * * * * *
12005366 TAC--CTGTCTATTATATGATAAGAAATTGACATGTGAC-CAA-ATGAACTACTATGCCCTCATA
64 TACTTATTTCCATTATATGATAAGAAATTGACATGTGCCTCAATA-GAA-TATTATG-CCTCAAA
* *
12005427 CAAT
126 CCAC
* * * * * *
12005431 AATTACAAAAATAC-CATTCT-TTGATACTTA-TTCACTAAATAATCCCTTATGAAATTTCAAAA
1 AATTACAAAAATGCATATTCTCTT-ATAATTATTTC-CTAAATAATCCC-TATAAAATTACCAAA
* * * * * *
12005493 ATGGC--ATTTCCATCAAATGAAAAGAAA-TGACATGTGCCTCAATAGAGTATTTTGCCTCAAAC
63 AT-ACTTATTTCCATTATATGATAAGAAATTGACATGTGCCTCAATAGAATATTATGCCTCAAAC
*
12005555 CAT
127 CAC
* **
12005558 AATTACGAAAATGCATATTCTCTTATAATTATTTCCTAAATAAT-TTTATTAAAAATTACCAAAA
1 AATTACAAAAATGCATATTCTCTTATAATTATTTCCTAAATAATCCCTA-T-AAAATTACCAAAA
* * *
12005622 TA-TTATTTCCATTATATGATAAGAAATTGACATGTAG-CTGAATGGAATATTATGCCATCAAAG
64 TACTTATTTCCATTATATGATAAGAAATTGACATGT-GCCTCAATAGAATATTATGCC-TCAAAC
*
12005685 TAC
127 CAC
* * ***
12005688 AATTACAAAAATGCCTATTCT-TTAGTAGTTATGTT-CTAAATAATCCCCTATAAAATTTTGAAA
1 AATTACAAAAATGCATATTCTCTTA-TAATTAT-TTCCTAAATAAT-CCCTATAAAATTACCAAA
* * * *
12005751 ATACCTT-TTTCCATTATATGATAAGAAATTGATATGTGGC-CAA-ATGAACTACTATAACCTCA
63 ATA-CTTATTTCCATTATATGATAAGAAATTGACATGTGCCTCAATA-GAA-TATTAT-GCCTCA
* *
12005813 TACCAT
124 AACCAC
** * ** * *
12005819 AATTATGAAAATACCCATTTTCTTATAATTATTTACTAAATAATCCCT
1 AATTACAAAAATGCATATTCTCTTATAATTATTTCCTAAATAATCCCT
12005867 TATGAAAGTA
Statistics
Matches: 534, Mismatches: 119, Indels: 82
0.73 0.16 0.11
Matches are distributed among these distances:
126 2 0.00
127 32 0.06
128 142 0.27
129 134 0.25
130 139 0.26
131 76 0.14
132 9 0.02
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (129 bp):
AATTACAAAAATGCATATTCTCTTATAATTATTTCCTAAATAATCCCTATAAAATTACCAAAATA
CTTATTTCCATTATATGATAAGAAATTGACATGTGCCTCAATAGAATATTATGCCTCAAACCAC
Found at i:12005977 original size:122 final size:122
Alignment explanation
Indices: 12005762--12006001 Score: 301
Period size: 122 Copynumber: 2.0 Consensus size: 122
12005752 TACCTTTTTC
* * *
12005762 CATTATATGATAAGAAATTGATATGTGGCCAAATGAACTACTATAACCTCATACCATAATTATGA
1 CATTACATGATAAGAAATTGACATGTGGCCAAATGAACTACTATAACCTCATACCATAATTAAGA
*
12005827 AAATACCCATTTTCTTATAATTATTTACTAAATAATCCCTTATGAAAGTACCATTTA
66 AAATACCCATTTTCTTATAATTATTTACTAAATAATCCCCTATGAAAGTACCATTTA
* * **
12005884 CATTACATGATAAGAAATTGACATGTGGCCAATTGGACTA-TCATTCCCTCAT-CCTATAATACT
1 CATTACATGATAAGAAATTGACATGTGGCCAAATGAACTACT-ATAACCTCATACC-ATAAT--T
* * *
12005947 AAGAAAA-AGCCATTCTT-TTATAATTA-TTACTAAATAATCCCCTATTAAATTACCA
62 AAGAAAATACCCATT-TTCTTATAATTATTTACTAAATAATCCCCTATGAAAGTACCA
12006002 AAATACCCTT
Statistics
Matches: 102, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
121 3 0.03
122 75 0.74
123 15 0.15
124 9 0.09
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.34
Consensus pattern (122 bp):
CATTACATGATAAGAAATTGACATGTGGCCAAATGAACTACTATAACCTCATACCATAATTAAGA
AAATACCCATTTTCTTATAATTATTTACTAAATAATCCCCTATGAAAGTACCATTTA
Done.