Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 60 of 131
Found at i:12008325 original size:265 final size:265
Alignment explanation
Indices: 12007852--12008373 Score: 857
Period size: 265 Copynumber: 2.0 Consensus size: 265
12007842 TTAGGTATAT
* * *
12007852 TATGTAAGAGATAAATAAGTCTTCTGTCTAATCTTTGGTACATTTCCCTATCTATAATAGCATCT
1 TATGTAAGAGATAAATAAGTCTTCTATCTAATCTTTGATACATTTCCCTATCTATAACAGCATCT
*
12007917 TCATTAGCTTCTTCAAGTTTATGATTAGGATCTATAAGGGTACTTGCAGGTTTACATGCGAGCTT
66 TCATTAGCTTCTTCAAGTTTATGATTAGGATCTATAAGGGTACTTGCAGGTTTACATGCGAGATT
* *
12007982 CCTAAATTTCTTTAAAAGATCCATCACATATTTCTATTGTAAGATGAAAATATCATGCTGTGAGT
131 CCTAAATTTCTTCAAAAGATCCATCACATATTTCTATTGTAAGATGAAAATACCATGCTGTGAGT
* * *
12008047 GAGCTACTTCAATTCCTAGGAAGTACTTCAATCTCCCTACATTTTTATCTTAAATTCTCTAAAGG
196 AAGCTACTTCAATTCCTAAGAAGTACTTCAATCTCCCTACACTTTTATCTTAAATTCTCTAAAGG
12008112 TCTAG
261 TCTAG
* *
12008117 TATGTAAGAGATAAATAAGTCTTCTATCTAATCTTTGATACATTTCCCTATTTATAGCAGCATCT
1 TATGTAAGAGATAAATAAGTCTTCTATCTAATCTTTGATACATTTCCCTATCTATAACAGCATCT
* *
12008182 TCATTAGCTTC-TCAAAGTTTATGATTAGGATCTATAGGGGTACTTGTAGGTTTACATGCGAGAT
66 TCATTAGCTTCTTC-AAGTTTATGATTAGGATCTATAAGGGTACTTGCAGGTTTACATGCGAGAT
* * *
12008246 TCCTAATTTTCTTCAAAAGATCTATTACATATTTCTATTGTAAGATGAAAATACCATGCTGTGAG
130 TCCTAAATTTCTTCAAAAGATCCATCACATATTTCTATTGTAAGATGAAAATACCATGCTGTGAG
* * *
12008311 TAAGCTACTTCAATTCTTAAGAAGTACTTCAATCTTCTTACACTTTTATCTTAAATTCTCTAA
195 TAAGCTACTTCAATTCCTAAGAAGTACTTCAATCTCCCTACACTTTTATCTTAAATTCTCTAA
12008374 CCAAACACTA
Statistics
Matches: 237, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
264 2 0.01
265 235 0.99
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (265 bp):
TATGTAAGAGATAAATAAGTCTTCTATCTAATCTTTGATACATTTCCCTATCTATAACAGCATCT
TCATTAGCTTCTTCAAGTTTATGATTAGGATCTATAAGGGTACTTGCAGGTTTACATGCGAGATT
CCTAAATTTCTTCAAAAGATCCATCACATATTTCTATTGTAAGATGAAAATACCATGCTGTGAGT
AAGCTACTTCAATTCCTAAGAAGTACTTCAATCTCCCTACACTTTTATCTTAAATTCTCTAAAGG
TCTAG
Found at i:12011309 original size:22 final size:22
Alignment explanation
Indices: 12011284--12011325 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
12011274 ATATTCTATC
12011284 CTTAATTCTA-GAGATACAAATT
1 CTTAATTCTAGGA-ATACAAATT
*
12011306 CTTAATTTTAGGAATACAAA
1 CTTAATTCTAGGAATACAAA
12011326 ATATATATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.36
Consensus pattern (22 bp):
CTTAATTCTAGGAATACAAATT
Found at i:12011825 original size:77 final size:77
Alignment explanation
Indices: 12011744--12011888 Score: 182
Period size: 77 Copynumber: 1.9 Consensus size: 77
12011734 ATAACTATTC
* * *
12011744 CATTATATCATAAGAAATTGACATGTGACCAAATGAACTACTATGCCCTCATACAATAATTATGA
1 CATTACATCATAAGAAATTAACATATGACCAAATGAACTACTATGCCCTCATACAATAATTATGA
12011809 AAATACCATTTA
66 AAATACCATTTA
* * * * * * * * *
12011821 CATTACATGATATGAAATTAACATATGGCCAAATGGACTATTGTTCCCTCATTCCATAATTATGA
1 CATTACATCATAAGAAATTAACATATGACCAAATGAACTACTATGCCCTCATACAATAATTATGA
12011886 AAA
66 AAA
12011889 AATCCCTTCT
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
77 56 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (77 bp):
CATTACATCATAAGAAATTAACATATGACCAAATGAACTACTATGCCCTCATACAATAATTATGA
AAATACCATTTA
Found at i:12012643 original size:129 final size:129
Alignment explanation
Indices: 12012209--12013302 Score: 820
Period size: 130 Copynumber: 8.4 Consensus size: 129
12012199 ATATCTCTTA
* * ** * * *
12012209 TCTTATAATTATTAACTAAATAATCCTTTAAAAAATT-TACAAAA-ATGCCTTATCTATTATTTG
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTAT-CAAAATA-CCCTT-TCCATTATATG
* * * * * * ** *
12012272 ATAAGAAATTAACATGTGACCAAATTGACTAATATACCCTCATATCATAATTACAAAAAGAAACT
63 ATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATACCATAATTA-TGAAA-ATAC-
12012337 ACTTT-
125 -CTTTC
* * * * * * * *
12012342 T-TTATGATTATTTAATAAATAATCTCC-CATGAAATTACCAAGACA-CTTTGTCCATTATATTA
1 TCTTATAATTATTTACTAAATAATC-CCTTATGAAATTATCAAAATACCCTT-TCCATTATATGA
* * * * * * **
12012404 TAAGAAATTGACATTTAGCTAAA-ATGACTATTATGACCTCAAACCAAAATTACAAAAATACCCC
64 TAAGAAATTGACATGTGGCCAAATA-GACTATTATGCCCTCATACCATAATTATGAAAATA--CC
*
12012468 TAT-
126 TTTC
* * * *
12012471 TCTTATTATTATTTACTAAATAATCCCCTATGAAATTATCAAAATACCCTTTCGATTATATTATA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACCCTTTCCATTATATGATA
** *
12012536 CA-AAATTGACATGTGGCCAAATAGACTGCTATGCCCTCATTCCATAATTATGAAAATACCTTTC
66 -AGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATACCATAATTATGAAAATACCTTTC
* * ** *
12012600 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATTCCAATTCCATCATATGATA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACCCTTTCCATTATATGATA
* * * * ** *
12012665 AGAAATTGACATGTGGCCAAATATAAGTATTTTGCTCTCATACCATAATTACAAAAATACATTTT
66 AGAAATTGACATGTGGCCAAATA-GACTATTATGCCCTCATACCATAATTATGAAAATAC-CTTT
12012730 C
129 C
* * * * ***
12012731 TCTTATAATTATTTACTAAAGAATCTCTTAGGAAATTACCAAAAT-GTTTTTCCATTATATGATA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACCCTTTCCATTATATGATA
* * * * * * * **
12012795 AGAAAATGACATGTAGTCAAATTGACTATTATGCCTTCGA-AACACAATTACAAAAATACACTTT
66 AGAAATTGACATGTGGCCAAATAGACTATTATGCCCTC-ATACCATAATTATGAAAATAC-CTTT
12012859 C
129 C
* * * * *
12012860 TCTAATAATTATTTACAAAATAATCCCCTATGAAATTATGAAAATACCTTTTCCATTATATGATA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACCCTTTCCATTATATGATA
* * ** * * **
12012925 AGAAATTGATATGTGGCCAAATGGACTATTATTACCTCATACCATCATAATGAAAATACCCAT-
66 AGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATACCATAATTATGAAAATACCTTTC
* * * ** * *
12012988 T-TTATAATTATTTA-TCAAATAATCCCTTATGAAATTACCAAAACATCAATTCCATTAAATAAT
1 TCTTATAATTATTTACT-AAATAATCCCTTATGAAATTATCAAAATACCCTTTCCATTATATGAT
* * * * ** * *
12013051 AAGAAATTGACATGTGGCCAAGTGGACTATTGTTCCCTCACT-TTATAATTATGAAAACAACCCT
65 AAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCA-TACCATAATTATGAAAA-TACCTT
12013115 TC
128 TC
* * * * *
12013117 TTTTATAATTA-TTACTAAATAATCCCTTATTAAATTATGAAAATACCCCTTCTATTATATGATA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACCCTTTCCATTATATGATA
* * * * * * * * * *
12013181 AGAAGTTAAAATGTGGCAAAAT-GTGCTATTACG-CCTGAATACCATAATTTTTAAAATATCCAT
66 AGAAATTGACATGTGGCCAAATAG-ACTATTATGCCCT-CATACCATAATTATGAAAATA-CCTT
12013244 TC
128 TC
* * * *
12013246 TCTTTTAATTATTTACAAAATAATCTCTTATGAAATTATCAAAATGCCCTTTCCATT
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACCCTTTCCATT
12013303 CATGATGTAC
Statistics
Matches: 762, Mismatches: 170, Indels: 61
0.77 0.17 0.06
Matches are distributed among these distances:
127 97 0.13
128 18 0.02
129 247 0.32
130 264 0.35
131 103 0.14
132 30 0.04
133 3 0.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (129 bp):
TCTTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACCCTTTCCATTATATGATA
AGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATACCATAATTATGAAAATACCTTTC
Found at i:12012933 original size:389 final size:389
Alignment explanation
Indices: 12012209--12013071 Score: 991
Period size: 389 Copynumber: 2.2 Consensus size: 389
12012199 ATATCTCTTA
* * ** * * * * *
12012209 TCTTATAATTATTAACTAAATAATCCTTTAAAAAATTTACAAAAATGCC-TTATCTATTATTTGA
1 TCTTATAATTATTTACTAAATAATCCCTTATGAAA-TTACCAAAATTCCAAT-TCCATTATATGA
* * * *
12012273 TAAGAAATTAACATGTGACCAAATTGACTAATATACCCTCATATCATAATTACAAAAAGAAACTA
64 TAAGAAATTGACATGTGGCCAAATTAACTAATATACCCTCATACCATAATTACAAAAAGAAACTA
* * * *
12012338 CTTTTTTATGATTATTTAATAAATAATCTCCCATGAAATTACCAAGACACTTTGTCCATTATATT
129 CTTTTTTATAATTATTTAATAAAGAATCTCCCAGGAAATTACCAAGACACTTTGTCCATTATATG
* * *
12012403 ATAAGAAATTGACATTTAGCTAAAATGACTATTATGACCTCAAACCAAAATTACAAAAATACCCC
194 ATAAGAAAATGACATGTAGCTAAAATGACTATTATGACCTCAAACCAAAATTACAAAAATACCAC
* * * *
12012468 TATTCTTATTATTATTTACTAAATAATCCCCTATGAAATTATCAAAATACCCTTTCGATTATATT
259 TATTCTTATAATTATTTACAAAATAATCCCCTATGAAATTATCAAAATACCCTTTCCATTATATG
* * * * **
12012533 ATACAAAATTGACATGTGGCCAAATAGACTGCTATGCCCTCATTCCATAATTATGAAAATACCTT
324 ATACAAAATTGACATGTGGCCAAATAGACTACTATGACCTCATACCATAATAATGAAAATACCCA
12012598 T
389 T
*
12012599 CTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATTCCAATTCCATCATATGAT
1 -TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATTCCAATTCCATTATATGAT
* * * * * *
12012664 AAGAAATTGACATGTGGCCAAATATAAGTATTTTGCTCTCATACCATAATTAC-AAAA-ATAC-A
65 AAGAAATTGACATGTGGCCAAAT-TAACTAATATACCCTCATACCATAATTACAAAAAGAAACTA
* * ** * *
12012726 TTTTCTCTTATAATTATTTACTAAAGAATCTCTTAGGAAATTACCAA-A-ATGTTTTTCCATTAT
129 CTTT-T-TTATAATTATTTAATAAAGAATCTCCCAGGAAATTACCAAGACA-CTTTGTCCATTAT
* *
12012789 ATGATAAGAAAATGACATGTAG-TCAAATTGACTATTATG-CCTTCGAAA-CACAATTACAAAAA
191 ATGATAAGAAAATGACATGTAGCT-AAAATGACTATTATGACC-TC-AAACCAAAATTACAAAAA
* *
12012851 TA-CACT-TTCTCTAATAATTATTTACAAAATAATCCCCTATGAAATTATGAAAATACCTTTTCC
253 TACCACTATTCT-T-ATAATTATTTACAAAATAATCCCCTATGAAATTATCAAAATACCCTTTCC
* * * * *
12012914 ATTATATGATA-AGAAATTGATATGTGGCCAAATGGACTATTATTACCTCATACCATCATAATGA
316 ATTATATGATACA-AAATTGACATGTGGCCAAATAGACTACTATGACCTCATACCATAATAATGA
12012978 AAATACCCAT
380 AAATACCCAT
* * *
12012988 T-TTATAATTATTTA-TCAAATAATCCCTTATGAAATTACCAAAACAT-CAATTCCATTAAATAA
1 TCTTATAATTATTTACT-AAATAATCCCTTATGAAATTACCAAAA-TTCCAATTCCATTATATGA
12013050 TAAGAAATTGACATGTGGCCAA
64 TAAGAAATTGACATGTGGCCAA
12013072 GTGGACTATT
Statistics
Matches: 403, Mismatches: 56, Indels: 30
0.82 0.11 0.06
Matches are distributed among these distances:
386 1 0.00
387 79 0.20
388 15 0.04
389 171 0.42
390 83 0.21
391 54 0.13
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.35
Consensus pattern (389 bp):
TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATTCCAATTCCATTATATGATA
AGAAATTGACATGTGGCCAAATTAACTAATATACCCTCATACCATAATTACAAAAAGAAACTACT
TTTTTATAATTATTTAATAAAGAATCTCCCAGGAAATTACCAAGACACTTTGTCCATTATATGAT
AAGAAAATGACATGTAGCTAAAATGACTATTATGACCTCAAACCAAAATTACAAAAATACCACTA
TTCTTATAATTATTTACAAAATAATCCCCTATGAAATTATCAAAATACCCTTTCCATTATATGAT
ACAAAATTGACATGTGGCCAAATAGACTACTATGACCTCATACCATAATAATGAAAATACCCAT
Found at i:12014158 original size:130 final size:129
Alignment explanation
Indices: 12013755--12014242 Score: 327
Period size: 130 Copynumber: 3.8 Consensus size: 129
12013745 TGGCCCTTAT
* * * * *
12013755 ACCATAATTACGAAAATA--TCGTTCTCTTATAATTATTTACCAAATAATCTCGT-ATGAAATTA
1 ACCATAATTACCAAAATACCTC-TTCTCTTAAAATTATTTACTAAATAATC-CCTAATGAAAGTA
* ** * ** * * * *
12013817 CCAAAATGCCATTTTTATCATATGATAAGAAATT-AGGTTGTAGCC-AAATGAACTACTAT-ACC
64 CAAAAAT-CCATTTCCATTATATGATAAGAAATTGA-CATATAACCAAAAAG-ACTATTATGA-C
* *
12013879 CTTAT
125 CTAAA
* * *
12013884 ACAATAATTACAAAAATACAT-TTACTCTTAAGAA--A-TTACTAAATAATCCCTTAA-GAAAGT
1 ACCATAATTACCAAAATACCTCTT-CTCTTAA-AATTATTTACTAAATAATCCC-TAATGAAAGT
* ** * * * *** *
12013944 ACGAAAATGGATTTTCCATTATATGATGAGAAATTCACATGTAACCAAGTGGACTATTATGCCCT
63 ACAAAAATCCA-TTTCCATTATATGATAAGAAATTGACATATAACCAAAAAGACTATTATGACCT
12014009 AAA
127 AAA
* * *
12014012 AGCATAATTACCAAAATACC-CTT-TCTTTAATAGTTATTTACTAAATAATCCCTAATGAAATTA
1 ACCATAATTACCAAAATACCTCTTCTC-TTAA-AATTATTTACTAAATAATCCCTAATGAAAGTA
* * * *
12014075 CAAAAATACCATTTCCATTATATGATAAGAAATTGATATATGACCAAAAAGACTATTATTACCTC
64 CAAAAAT-CCATTTCCATTATATGATAAGAAATTGACATATAACCAAAAAGACTATTATGACCTA
*
12014140 AT
128 AA
** * * * *
12014142 ACCATAATTATGAAAATACCTCTTCTCTTAAAATTATGTAATAAATAATCCCTTATGAAAGTACC
1 ACCATAATTACCAAAATACCTCTTCTCTTAAAATTATTTACTAAATAATCCCTAATGAAAGTACA
* ** *
12014207 AAAATGCCTTTTATATTATATGATAAAAAATTGACA
66 AAAAT-CCATTTCCATTATATGATAAGAAATTGACA
12014243 CGTGGCAAAT
Statistics
Matches: 280, Mismatches: 60, Indels: 37
0.74 0.16 0.10
Matches are distributed among these distances:
126 2 0.01
127 7 0.03
128 79 0.28
129 27 0.10
130 152 0.54
131 11 0.04
132 2 0.01
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.33
Consensus pattern (129 bp):
ACCATAATTACCAAAATACCTCTTCTCTTAAAATTATTTACTAAATAATCCCTAATGAAAGTACA
AAAATCCATTTCCATTATATGATAAGAAATTGACATATAACCAAAAAGACTATTATGACCTAAA
Found at i:12014353 original size:128 final size:128
Alignment explanation
Indices: 12013918--12014357 Score: 311
Period size: 130 Copynumber: 3.4 Consensus size: 128
12013908 CTCTTAAGAA
* * * *** * *
12013918 ATTACTAAATAATCCCTTAAGAAAGTACGAAAATGGATTTTCCATTATATGATGAGAAATT--CA
1 ATTACTAAATAATCCCTTATGAAACTACCAAAAT-CCCTTTCCATTATATGATAAAAAATTGACA
*** ** * * * * **
12013981 CATGTAACCAAGTGGACTATTATGCCCTAAAAGCATAATTACCAAAATACC-CTT-TCTTTAATA
65 CATG--ACCAAAAAGACTATTATTACCTCATACCATAATAAAGAAAATACCTCTTCTC-TTAA-A
*
12014044 GTT
126 ATT
* * * * * *
12014047 ATTTACTAAATAATCCCTAATGAAATTACAAAAATACCATTTCCATTATATGATAAGAAATTGAT
1 A-TTACTAAATAATCCCTTATGAAACTACCAAAAT-CCCTTTCCATTATATGATAAAAAATTGAC
* * *
12014112 ATATGACCAAAAAGACTATTATTACCTCATACCATAATTATGAAAATACCTCTTCTCTTAAAATT
64 ACATGACCAAAAAGACTATTATTACCTCATACCATAATAAAGAAAATACCTCTTCTCTTAAAATT
* * * **
12014177 ATGTAATAAATAATCCCTTATGAAAGTACCAAAATGCCTTTTATATTATATGATAAAAAATTGAC
1 AT-TACTAAATAATCCCTTATGAAACTACCAAAAT-CCCTTTCCATTATATGATAAAAAATTGAC
* * ** * * * **
12014242 ACGTG-GCAAATGGACTATTGTT-CCTTTATCCCATAATAAAGAGAAA-ACC-CTTTCTCTTGTA
64 ACATGACCAAAAAGACTATTATTACC-TCATACCATAATAAAGA-AAATACCTC-TTCTCTTAAA
12014303 ATT
126 ATT
*
12014306 ATTACTAAATAATCCCTTATTAAACTACCAAAATCCCTTTCCCATTATATGA
1 ATTACTAAATAATCCCTTATGAAACTACCAAAATCCCTTT-CCATTATATGA
12014358 ATAGAATTAT
Statistics
Matches: 251, Mismatches: 50, Indels: 21
0.78 0.16 0.07
Matches are distributed among these distances:
127 5 0.02
128 41 0.16
129 44 0.18
130 148 0.59
131 7 0.03
132 6 0.02
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (128 bp):
ATTACTAAATAATCCCTTATGAAACTACCAAAATCCCTTTCCATTATATGATAAAAAATTGACAC
ATGACCAAAAAGACTATTATTACCTCATACCATAATAAAGAAAATACCTCTTCTCTTAAAATT
Found at i:12015009 original size:128 final size:126
Alignment explanation
Indices: 12014836--12015197 Score: 333
Period size: 130 Copynumber: 2.8 Consensus size: 126
12014826 GAAATTTAAC
12014836 AAGGGATTATTTAGT-AATAATTATAAAAGAAGGGATATTTTCATAATTGTATTATAAGGAAATA
1 AAGGGATTATTTAGTAAATAATTATAAAAGAAGGG-TATTTTCATAATT-TATTATAAGGAAATA
* * * *
12014900 ATAGTCTATTTGGTCACATGTCAATTTTCTTATCATATAATAGAAATAGTATTTTAGTAA-GGT
64 ATAGTC-ATTTGGTCACATGTCAAATTTCTTATCATATAATAGAAAGAATATTTTAGTAATCGT
* * * * *
12014963 AGGGGATTATTTAGTAAATAATTATAATAGAAGGAGTATTTTCATAA-TTATGATATGAAATCAT
1 AAGGGATTATTTAGTAAATAATTATAAAAGAAGG-GTATTTTCATAATTTATTATAAGGAA--AT
* * * * *
12015027 AAAAGTCAATTTGGTAACATGT-AAATCTCTTATCATATAATGGAAAGAATATTTTTGTAATCTC
63 AATAGTC-ATTTGGTCACATGTCAAATTTCTTATCATATAATAGAAAGAATATTTTAGTAA--TC
12015091 GT
125 GT
* * * * * * *
12015093 AAAGGTTTATATAGCAAATAATTATAAGAA-AAGGGGTATTTTCATAA-TTATGGTAAAAAGACA
1 AAGGGATTATTTAGTAAATAATTATAA-AAGAA-GGGTATTTTCATAATTTAT--TATAAGGAAA
* * *
12015156 TAATAGTACATTTGGACACATGTC-ACTTTCTTATCAAATAAT
62 TAATAGT-CATTTGGTCACATGTCAAATTTCTTATCATATAAT
12015198 GGGATGGGCT
Statistics
Matches: 189, Mismatches: 33, Indels: 23
0.77 0.13 0.09
Matches are distributed among these distances:
126 9 0.05
127 47 0.25
128 49 0.26
129 1 0.01
130 76 0.40
131 4 0.02
132 3 0.02
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (126 bp):
AAGGGATTATTTAGTAAATAATTATAAAAGAAGGGTATTTTCATAATTTATTATAAGGAAATAAT
AGTCATTTGGTCACATGTCAAATTTCTTATCATATAATAGAAAGAATATTTTAGTAATCGT
Found at i:12015139 original size:130 final size:125
Alignment explanation
Indices: 12014851--12015144 Score: 302
Period size: 128 Copynumber: 2.3 Consensus size: 125
12014841 ATTATTTAGT
* * * * * *
12014851 AATAATTATAAAAGAAGGGATATTTTCATAATTGTATTATAAGGAAATAATAGTCTATTTGGTCA
1 AATAATTATAAAA-AAGGGGTATTTTCATAA-T-TATGATAAGAAAATAAAAGTCAATTTGGTAA
* * * * * ** * *
12014916 CATGTCAATTTTCTTATCATATAATAGAAATAGTATTTTAGTAAGGTAGGGGATTATTTAGTA
63 CATGTCAAATCTCTTATCATATAATAGAAAGAATATTTTAGTAACGTAAAGGATTATATAGCA
* * *
12014979 AATAATTATAATAGAAGGAGTATTTTCATAATTATGATATGAAATCATAAAAGTCAATTTGGTAA
1 AATAATTATAA-AAAAGGGGTATTTTCATAATTATGATAAGAAA--ATAAAAGTCAATTTGGTAA
* * *
12015044 CATGT-AAATCTCTTATCATATAATGGAAAGAATATTTTTGTAATCTCGTAAAGGTTTATATAGC
63 CATGTCAAATCTCTTATCATATAATAGAAAGAATATTTTAGTAA---CGTAAAGGATTATATAGC
12015108 A
125 A
12015109 AATAATTATAAGAAAAGGGGTATTTTCATAATTATG
1 AATAATTATAA-AAAAGGGGTATTTTCATAATTATG
12015145 GTAAAAAGAC
Statistics
Matches: 136, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
126 9 0.07
127 33 0.24
128 47 0.35
129 1 0.01
130 46 0.34
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (125 bp):
AATAATTATAAAAAAGGGGTATTTTCATAATTATGATAAGAAAATAAAAGTCAATTTGGTAACAT
GTCAAATCTCTTATCATATAATAGAAAGAATATTTTAGTAACGTAAAGGATTATATAGCA
Found at i:12015516 original size:128 final size:130
Alignment explanation
Indices: 12015280--12015516 Score: 295
Period size: 128 Copynumber: 1.8 Consensus size: 130
12015270 ATTTCATTGG
* * *
12015280 GGATTATTTAGTAAATAATTATAAGAAAAGAGGTTCTCTCATAATTATGGTATGAAGACAAAATA
1 GGATAATTTAGTAAATAATTACAAGAAAAGAGGTTCTCTCATAATTATGATATGAAGACAAAATA
**
12015345 GTCCATTTGGCCACATGGTAATTTCTTATCATATAATGGAAAGGATACTTAGGCAATTTCTTAAA
66 GTCCATTTGGCCACATGAAAATTTCTTATCATATAATGGAAAGGATACTTAGGCAATTTCTTAAA
* * * * *
12015410 GGATAATTTAGTAAATAATTACAAGAAAAG-GGTAT-TTTTATAATTATGATA-GAGGGCATTAA
1 GGATAATTTAGTAAATAATTACAAGAAAAGAGGT-TCTCTCATAATTATGATATGAAGACA-AAA
* * *
12015472 -AGT-CATTTTGGCGACATGAAAATTTTTTATCATGTAATGGAAAGG
64 TAGTCCA-TTTGGCCACATGAAAATTTCTTATCATATAATGGAAAGG
12015517 GTTTTTTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
127 2 0.02
128 42 0.46
129 18 0.20
130 29 0.32
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (130 bp):
GGATAATTTAGTAAATAATTACAAGAAAAGAGGTTCTCTCATAATTATGATATGAAGACAAAATA
GTCCATTTGGCCACATGAAAATTTCTTATCATATAATGGAAAGGATACTTAGGCAATTTCTTAAA
Found at i:12015805 original size:444 final size:444
Alignment explanation
Indices: 12014966--12015817 Score: 994
Period size: 444 Copynumber: 1.9 Consensus size: 444
12014956 GTAAGGTAGG
* * * * *
12014966 GGATTATTTAGTAAATAATTATAATAGAAGGAGTATTTTCATAATTATGATATGAAATCATAAAA
1 GGATAATTTAGTAAATAATTACAAGAAAAGGAGTATTTTCATAATTATGATATGAAAGCATAAAA
* * * *
12015031 GTCAATTTGGTAACATGTAAATCTCTTATCATATAATGGAAAGAATATTTTTGTAATCTCGTAAA
66 GTCAATTTGGCAACATGAAAATCTCTTATCATATAATGGAAAGAATATTTTTATAATCTCATAAA
* * * *
12015096 GGTTTATATAGCAAATAATTATAAGAAAAGGGGTATTTTCATAATTATGGTAAAAAGACATAATA
131 GGATTATATAGCAAATAATCAGAAGAAAAGGGGTAATTTCATAATTATGGTAAAAAGACATAATA
* * * ** *
12015161 GTACATTTGGACACATGTCACTTTCTTATCAAATAATGGGATGGGCTATTTTGTAATTTTATAAG
196 GTACATATGGACACATGCCACTTTCTCATCAAATAATGGGATGGGCTATTTAATAATTTCATAAG
* * * *
12015226 AGATGCTTTTAATGTATGTCATTAATGGAAAAGGTTTTTTGTTAATTTCATTGGGGATTATTTAG
261 AGATGCTTTTAATGTATGTCATTAATGCAAAAGGTTTTTGGTAAATTTCATAGGGGATTATTTAG
* *
12015291 TAAATAATTATAAGAAAAGAGGTTCTCTCATAATTATGGTATGAAGACAAAATAGTCCATTTGGC
326 TAAATAATTATAAGAAAAGAGGTTCTCTCATAATTATGGTATGAAGACAAAATAATCCATTTGAC
*
12015356 CACATGGTAATTTCTTATCATATAATGGAAAGGATACTTAGGCAATTTCTTAAA
391 CACATGGTAACTTCTTATCATATAATGGAAAGGATACTTAGGCAATTTCTTAAA
* ** *
12015410 GGATAATTTAGTAAATAATTACAAGAAAAGG-GTATTTTTATAATTATGATA-GAGGGCATTAAA
1 GGATAATTTAGTAAATAATTACAAGAAAAGGAGTATTTTCATAATTATGATATGAAAGCATAAAA
* * * * * ** *
12015473 GTCATTTTGGCGACATGAAAATTTTTTATCATGTAATGGAAAGGGTTTTTTTTTATAAT-T-ATA
66 GTCAATTTGGCAACATGAAAATCTCTTATCATATAATGGAAA--GAATATTTTTATAATCTCATA
* * *
12015536 TAAGGGATTATATAGTAAATAATCAGAAGAAAA-GGTTCAATTTCATAATTATGGTATAAATG-C
129 -AA-GGATTATATAGCAAATAATCAGAAGAAAAGGGGT-AATTTCATAATTATGGTA-AAAAGAC
* * *
12015599 ATAATAGTACA-ATGGTGCATATGCCA-TATTCTCATCAAATAATGGGATGGG-TAGTTTAATGA
190 ATAATAGTACATATGG-ACACATGCCACT-TTCTCATCAAATAATGGGATGGGCTA-TTTAATAA
*
12015661 TTTCATAAGAGATTCTTTTAATGTATGTCATT-A-GCAAAATGGGTATTTTGGTAAATTT-ATAG
252 TTTCATAAGAGATGCTTTTAATGTATGTCATTAATGCAAAA--GGT-TTTTGGTAAATTTCATAG
* ** * * * *
12015723 GGGATTATTTAGTAAATAATTATAAGAAAA-AGGGTAT-TTTTGTAATTATTGTATGAGGGCATA
314 GGGATTATTTAGTAAATAATTATAAGAAAAGA-GGT-TCTCTCATAATTATGGTATGAAGACAAA
* *
12015786 ATAATCCATTTTACCACATGTTAACTTCTTAT
377 ATAATCCATTTGACCACATGGTAACTTCTTAT
12015818 TGTATAATAG
Statistics
Matches: 340, Mismatches: 54, Indels: 28
0.81 0.13 0.07
Matches are distributed among these distances:
442 50 0.15
443 33 0.10
444 241 0.71
445 16 0.05
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (444 bp):
GGATAATTTAGTAAATAATTACAAGAAAAGGAGTATTTTCATAATTATGATATGAAAGCATAAAA
GTCAATTTGGCAACATGAAAATCTCTTATCATATAATGGAAAGAATATTTTTATAATCTCATAAA
GGATTATATAGCAAATAATCAGAAGAAAAGGGGTAATTTCATAATTATGGTAAAAAGACATAATA
GTACATATGGACACATGCCACTTTCTCATCAAATAATGGGATGGGCTATTTAATAATTTCATAAG
AGATGCTTTTAATGTATGTCATTAATGCAAAAGGTTTTTGGTAAATTTCATAGGGGATTATTTAG
TAAATAATTATAAGAAAAGAGGTTCTCTCATAATTATGGTATGAAGACAAAATAATCCATTTGAC
CACATGGTAACTTCTTATCATATAATGGAAAGGATACTTAGGCAATTTCTTAAA
Found at i:12016087 original size:130 final size:131
Alignment explanation
Indices: 12015821--12016753 Score: 778
Period size: 130 Copynumber: 7.2 Consensus size: 131
12015811 TTCTTATTGT
* * * * * *
12015821 ATAATAGTGCATTTGTCCACATGTCAATTTTTTACCAGA-AAGTGGAAAAGGTATTTTGGTAA-T
1 ATAATAGTCCATTTGGCCACATGTCAACTTCTTATCATATAA-TGGAAAAGGTATTTTGGTAATT
* * *
12015884 TAATAAGGGATTATTTAGT-AATAATTATAAGAGAATA-GTTATTTTCATAAGTT-TGGA-ATGA
65 TCATAAGGGATTATTTAGTAAATAATTATAAGA-AAAAGGGTATTTTCATAA-TTATGGATATGA
* *
12015945 GGGA
128 AGGC
* * ** * * *
12015949 ATAATAGTCCATTTGGCCACGTATCAACTTCTTGCCATGTAATGGAAAAGGCATTTTGAG-AATG
1 ATAATAGTCCATTTGGCCACATGTCAACTTCTTATCATATAATGGAAAAGGTATTTTG-GTAATT
* * * ** *
12016013 TCATAGGGGATTTTTTAGTAAATAATTATAAGAAAAAGGATACGTTCATAATTAT-GATATGATG
65 TCATAAGGGATTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTCATAATTATGGATATGAAG
12016077 GC
130 GC
* * * * * * * * *
12016079 ATATTAGTCAATTTGGCCCCATGTAAAATTCTTATCATATAATTCG-TAAGGCAATTTGGTAATT
1 ATAATAGTCCATTTGGCCACATGTCAACTTCTTATCATATAA-TGGAAAAGGTATTTTGGTAA-T
* *
12016143 TTC-TAAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATCGG-T-TG-
64 TTCATAAGGGATTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTCATAATTAT-GGATATGA
12016204 AGGAC
128 AGG-C
* * * * *
12016209 ATAATAGTCCATTTGGCTACATGTCAACTTATTATCATATAATGGATATGTTATTTTGGTAATTT
1 ATAATAGTCCATTTGGCCACATGTCAACTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTT
* * * * ** *
12016274 AATAAGCGATTATTTAGT-AATAATTATAA-AAGAATGGTTATTTTTGTAATTTTGGA-AT-AAG
66 CATAAGGGATTATTTAGTAAATAATTATAAGAA-AAAGGGTATTTTCATAATTATGGATATGAAG
*
12016335 AGA
130 -GC
* * * * * *
12016338 ATAATAGTTCATTTAGCCACATGTCAATTTCTTATCATGTAATAGAAATGGTATTTTGGTAATTT
1 ATAATAGTCCATTTGGCCACATGTCAACTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTT
* * *
12016403 CATAGGGGATTATTTTGTAAATAATTATAAG-AAAAGAGGTATTTTCATTATAATTAT-GATATA
66 CATAAGGGATTATTTAGTAAATAATTATAAGAAAAAG-GGTATTTTC---ATAATTATGGATATG
*
12016466 AAAGC
127 AAGGC
* * * * *
12016471 ACATTAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTAGTAATTT
1 ATAATAGTCCATTTGGCCACATGTCAACTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTT
* * * *
12016536 CTTTAGGGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCATAATTATGG-TATGAGGG
66 CATAAGGGATTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTCATAATTATGGATATGAAGG
12016600 C
131 C
* * * ** * ** * *
12016601 ATGATTGTTCATTTGGCCTTATGTCAATTTCTTATTGTATAATGGATAAGGCATTTTGGTAATTT
1 ATAATAGTCCATTTGGCCACATGTCAACTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTT
* * * * * * *
12016666 C-TTAGAGTATTATTTAGAAAATAATTATAA-AAGAAGGTGCATTTTCATAATTAT-GCTATAAA
66 CATAAG-GGATTATTTAGTAAATAATTATAAGAAAAAGG-GTATTTTCATAATTATGGATATGAA
12016728 GGC
129 GGC
* * *
12016731 ATAGTAGTACATTTGGACACATG
1 ATAATAGTCCATTTGGCCACATG
12016754 CCATTTTCTT
Statistics
Matches: 645, Mismatches: 127, Indels: 64
0.77 0.15 0.08
Matches are distributed among these distances:
128 50 0.08
129 147 0.23
130 331 0.51
131 7 0.01
132 3 0.00
133 101 0.16
134 6 0.01
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (131 bp):
ATAATAGTCCATTTGGCCACATGTCAACTTCTTATCATATAATGGAAAAGGTATTTTGGTAATTT
CATAAGGGATTATTTAGTAAATAATTATAAGAAAAAGGGTATTTTCATAATTATGGATATGAAGG
C
Found at i:12016616 original size:392 final size:388
Alignment explanation
Indices: 12015821--12016700 Score: 1040
Period size: 392 Copynumber: 2.3 Consensus size: 388
12015811 TTCTTATTGT
* * * * * * * *
12015821 ATAATAGTGCATTTGTCCACATGTCAATTTTTTACCAGA-AAGTGGAAAAGGTATTTTGGTAA-T
1 ATAATAGTCCATTTGGCCTCATGTCAACTTATTATCATATAA-TGGATAAGGTATTTTGGTAATT
* * *
12015884 TAATAAGGGATTATTTAGTAATAATTATAAGAGAATAGTTATTTTCATAAGTTTGGAATGAGGGA
65 TAATAA-GGATTATTTAGTAATAATTATAAAAGAATAGTTATTTTCATAAGTTTGGAATAAGAGA
* * * *
12015949 ATAATAGTCCATTTGGCCACGTATCAACTTCTTGCCATGTAATGGAAAAGGCATTTTGAGAATGT
129 ATAATAGTCCATTTAGCCACATATCAACTTCTTACCATGTAATAGAAAAGGCATTTTGAGAATGT
* * **
12016014 CATAGGGGATTTTTTAGTAAATAATTATAAGAAAAAGGATACGTTCATAATTATGATATGATGGC
194 CATAGGGGATTTTTTAGTAAATAATTATAAGAAAAAGGATACATTCATAATTATGATATAAAAGC
* * * *
12016079 ATATTAGTCAATTTGGCCCCATGTAAAATTCTTATCATATAATTCGTAAGGCAATTTGGTAATTT
259 ACATTAGTCAATTTGGCCACATGTAAAATTCTTATCATATAATTCGAAAGGCAATTTAGTAATTT
*
12016144 TCTAAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATCGGTTGAGGAC
324 TCTAAGGGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCATAATTATCGGTTGAGGAC
* *
12016209 ATAATAGTCCATTTGG-CTACATGTCAACTTATTATCATATAATGGATATGTTATTTTGGTAATT
1 ATAATAGTCCATTTGGCCT-CATGTCAACTTATTATCATATAATGGATAAGGTATTTTGGTAATT
* ** *
12016273 TAATAAGCGATTATTTAGTAATAATTATAAAAGAATGGTTATTTTTGTAATTTTGGAATAAGAGA
65 TAATAAG-GATTATTTAGTAATAATTATAAAAGAATAGTTATTTTCATAAGTTTGGAATAAGAGA
* * * * * * *
12016338 ATAATAGTTCATTTAGCCACATGTCAATTTCTTATCATGTAATAGAAATGGTATTTTG-GTAATT
129 ATAATAGTCCATTTAGCCACATATCAACTTCTTACCATGTAATAGAAAAGGCATTTTGAG-AATG
*
12016402 TCATAGGGGATTATTTT-GTAAATAATTATAAGAAAAGAGGTATTTTCATT-ATAATTATGATAT
193 TCATAGGGGATT-TTTTAGTAAATAATTATAAGAAAA-AGG-A--TACATTCATAATTATGATAT
* * * * *
12016465 AAAAGCACATTAGTCAATTTGGCCACATGTCAATTTCTTATCATATAA-TGGAAAAGGTATTTTA
253 AAAAGCACATTAGTCAATTTGGCCACATGTAAAATTCTTATCATATAATTCG-AAAGGCAATTTA
*
12016529 GTAA-TTTCTTTAGGGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCATAATTAT-GG
317 GTAATTTTC-TAAGGGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCATAATTATCGG
*
12016592 TATGAGGGC
381 T-TGAGGAC
* * * * * * ** *
12016601 ATGATTGTTCATTTGGCCTTATGTCAATTTCTTATTGTATAATGGATAAGGCATTTTGGTAATTT
1 ATAATAGTCCATTTGGCCTCATGTCAACTTATTATCATATAATGGATAAGGTATTTTGGTAATTT
** * *
12016666 CTTAGAGTATTATTTAGAAAATAATTATAAAAGAA
66 AATA-AGGATTATTTAG-TAATAATTATAAAAGAA
12016701 GGTGCATTTT
Statistics
Matches: 416, Mismatches: 60, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
387 1 0.00
388 49 0.12
389 141 0.34
390 7 0.02
391 10 0.02
392 184 0.44
393 24 0.06
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.39
Consensus pattern (388 bp):
ATAATAGTCCATTTGGCCTCATGTCAACTTATTATCATATAATGGATAAGGTATTTTGGTAATTT
AATAAGGATTATTTAGTAATAATTATAAAAGAATAGTTATTTTCATAAGTTTGGAATAAGAGAAT
AATAGTCCATTTAGCCACATATCAACTTCTTACCATGTAATAGAAAAGGCATTTTGAGAATGTCA
TAGGGGATTTTTTAGTAAATAATTATAAGAAAAAGGATACATTCATAATTATGATATAAAAGCAC
ATTAGTCAATTTGGCCACATGTAAAATTCTTATCATATAATTCGAAAGGCAATTTAGTAATTTTC
TAAGGGATTATTTAGTAAATAATTATAAGAGAAAGGGTATTTTCATAATTATCGGTTGAGGAC
Found at i:12017845 original size:128 final size:129
Alignment explanation
Indices: 12017658--12017905 Score: 297
Period size: 128 Copynumber: 1.9 Consensus size: 129
12017648 CGAAAATGAT
* **
12017658 ATTATTTAGTAAAGAATTATAAGAAACAGGGTATTTTCATAATTATGATACGAGGGCATAACAGT
1 ATTATTTAATAAAGAATTATAAGAAACAGGGTATTTTCATAATTACAATACGAGGGCATAACAGT
** * * **
12017723 TGATTTGG-CCCATGTTAATTTCTTATCATATAATGTAATGGGCATTTTGGTAATTGCTTAATGG
66 CCATTTGGTCACATGTCAATTTCTTATCATATAATG-AAAAGGCATTTTGGTAATTGCTTAATGG
* * * *
12017787 ATTATTTAAT-AAGTAATTATAAGAGAA-A-GGTATTTTCGTATTTACAATATGAGGGCATAATA
1 ATTATTTAATAAAG-AATTATAAGA-AACAGGGTATTTTCATAATTACAATACGAGGGCATAACA
* * *
12017849 GTCCATTTGGTCATATGTCAATTTTTTATCATATAATGAAAAGGTATTTTGGTAATT
64 GTCCATTTGGTCACATGTCAATTTCTTATCATATAATGAAAAGGCATTTTGGTAATT
12017906 TCATAGGTTA
Statistics
Matches: 100, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
128 55 0.55
129 43 0.43
130 2 0.02
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.40
Consensus pattern (129 bp):
ATTATTTAATAAAGAATTATAAGAAACAGGGTATTTTCATAATTACAATACGAGGGCATAACAGT
CCATTTGGTCACATGTCAATTTCTTATCATATAATGAAAAGGCATTTTGGTAATTGCTTAATGG
Found at i:12017855 original size:237 final size:237
Alignment explanation
Indices: 12017422--12018130 Score: 538
Period size: 237 Copynumber: 3.0 Consensus size: 237
12017412 TCATTGGGGG
* * * * **
12017422 TTATTTAGTAAATAATTATAAGAGAAGAAGTATTTTCATAATTATGGTATGAGGAAATAATTGTC
1 TTATTTAGTAAAGAATTATAAGAAAAGAAGTATTTTCATAATTATGATACGAGGAAATAACAGTC
* ** * *
12017487 CATTCGGCCACATGTCAATTTCTTCTTGTATAATGGAAAAGGTATTTAGGTAATTTCTCAAGGGA
66 CATTCGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATTTAGGTAATTGCTCAAGGGA
* * ** * *
12017552 TTATTTAGTAAATAATTATAAAAAAGGGTATTTTTATAATTATGATATAAAGTCATAATTGTCCA
131 TTATTTAATAAATAATTATAAAAAAGGGTATTTTCATAATTACAATATAAAGGCATAATAGTCCA
*
12017617 TTTGGCCACATTTCAATTTCTTATCATATAACGAAAATGATA
196 TTTGGCCACATGTCAATTTCTTATCATATAACGAAAATGATA
* **
12017659 TTATTTAGTAAAGAATTATAAGAAACAG-GGTATTTTCATAATTATGATACGAGGGCATAACAGT
1 TTATTTAGTAAAGAATTATAAGAAA-AGAAGTATTTTCATAATTATGATACGAGGAAATAACAGT
** * * * ** * * *
12017723 TGATTTGGCC-CATGTTAATTTCTTATCATATAATGTAATGGGCATTTTGGTAATTGCTTAATGG
65 CCATTCGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATTTAGGTAATTGCTCAAGGG
* * * * *
12017787 ATTATTTAATAAGTAATTATAAGAGAAA-GGTATTTTCGTATTTACAATATGAGGGCATAATAGT
130 ATTATTTAATAAATAATTATAA-A-AAAGGGTATTTTCATAATTACAATATAAAGGCATAATAGT
* * * * *
12017851 CCATTTGGTCATATGTCAATTTTTTATCATATAATGAAAA-GGTA
193 CCATTTGGCCACATGTCAATTTCTTATCATATAACGAAAATGATA
* * * ** * **
12017895 -T-TTTGGTAATTTCATAGGTTATAA-AAGAAGGGGTATTTTCATAATTAT-AGTATGAGGGCAT
1 TTATTTAGTAA----AGA-ATTATAAGAA-AAGAAGTATTTTCATAATTATGA-TACGAGGAAAT
* ** ** * * * * * * *
12017956 GATTGTCCATTTAGTCACAAGTCAATTTCATATCATATAATAGAAAGGGCATTTTGG-AATTTCT
59 AACAGTCCATTCGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATTTAGGTAATTGC-
* * * * * *** * *
12018020 TGAA-GAATTATTTAGTAAATAATTATAAAACAATGGGTATTTTGATAACTATGCTATGAGGGCA
123 TCAAGGGATTATTTAATAAATAATTATAAAA-AA-GGGTATTTTCATAATTACAATATAAAGGCA
* * * * * *
12018084 TAACAGTCCATTTGGCGACTTGCCAATTTCTTATCAAATAACAAAAA
186 TAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAACGAAAA
12018131 ATGCATGTTG
Statistics
Matches: 376, Mismatches: 80, Indels: 29
0.78 0.16 0.06
Matches are distributed among these distances:
234 7 0.02
235 1 0.00
236 65 0.17
237 123 0.33
238 15 0.04
239 69 0.18
240 96 0.26
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (237 bp):
TTATTTAGTAAAGAATTATAAGAAAAGAAGTATTTTCATAATTATGATACGAGGAAATAACAGTC
CATTCGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATTTAGGTAATTGCTCAAGGGA
TTATTTAATAAATAATTATAAAAAAGGGTATTTTCATAATTACAATATAAAGGCATAATAGTCCA
TTTGGCCACATGTCAATTTCTTATCATATAACGAAAATGATA
Found at i:12017966 original size:111 final size:111
Alignment explanation
Indices: 12017815--12018018 Score: 275
Period size: 111 Copynumber: 1.8 Consensus size: 111
12017805 ATAAGAGAAA
* * * * * **
12017815 GGTATTTTCGTATTTACAATATGAGGGCATAATAGTCCATTTGGTCATATGTCAATTTTTTATCA
1 GGTATTTTCATAATTACAATATGAGGGCATAATAGTCCATTTAGTCACAAGTCAATTTCATATCA
*
12017880 TATAAT-GAAAAGGTATTTTGGTAATTTCATAGGTTATAAAAGAAGG
66 TATAATAGAAAAGGCATTTTGG-AATTTCATAGGTTATAAAAGAAGG
* * * *
12017926 GGTATTTTCATAATTATAGTATGAGGGCATGATTGTCCATTTAGTCACAAGTCAATTTCATATCA
1 GGTATTTTCATAATTACAATATGAGGGCATAATAGTCCATTTAGTCACAAGTCAATTTCATATCA
*
12017991 TATAATAGAAAGGGCATTTTGGAATTTC
66 TATAATAGAAAAGGCATTTTGGAATTTC
12018019 TTGAAGAATT
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
111 66 0.84
112 13 0.16
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (111 bp):
GGTATTTTCATAATTACAATATGAGGGCATAATAGTCCATTTAGTCACAAGTCAATTTCATATCA
TATAATAGAAAAGGCATTTTGGAATTTCATAGGTTATAAAAGAAGG
Found at i:12018099 original size:368 final size:368
Alignment explanation
Indices: 12017658--12018420 Score: 796
Period size: 368 Copynumber: 2.1 Consensus size: 368
12017648 CGAAAATGAT
* *
12017658 ATTATTTAGTAAAGAATTATAAGAAACAGGGTATTTTCATAATTATGATACGAGGGCATAACAGT
1 ATTATTTAGTAAATAATTATAAGAAACAGGGTATTTTCATAACTATGATACGAGGGCATAACAGT
** * ** * *** ** * * *
12017723 TGATTTGGC-CCATGTTAATTTCTTATCATATAATGTAATGGGCATTTTGGTAATTGCTTAATG-
66 CCATTTGGCGACATGCCAATTTCTTATCAAATAACAAAAAAGGCATGTTGGTAATTGCAT-AGGC
* *
12017786 GATTATTTAATAAGTAATTATAAGAGAAAGGTATTTTCGTATT-TACAATATGAGGGCATAATAG
130 GATTATTTAATAAATAATTATAA-AG---GGTATTTTCATATTAT-CAATATGAGGGCATAATAG
* * * * * * * * *
12017850 TCCATTTGGTCATATGTCAATTTTTTATCAT-ATAATGAAAA-GGTATTTTGGTAATTTCATA-G
190 TCAATTTAGTCACAAGTCAACTTCTGATCATAAAAATGAAAATGATATTTTGGTAATTTCATATG
* * * * * * *
12017912 G-TTA-TAAAAGAAGGGGTATTTTCATAATTATAGTATGAGGGCATGATTGTCCATTTAGTCACA
255 GATTATTAAAAGAA-GAGTATTTTCATAATTATAATAAGAGGGCATAATAGTCAATTT-GGC-CA
12017975 A-GTCAATTTCATATCATATAATAGAAAGGGCATTTTGG-AATTTCTTGAA-GA
317 ATGTCAATTTCATATCATATAAT-GAAAGGGCATTTTGGAAATTTCTT-AAGGA
* * *
12018026 ATTATTTAGTAAATAATTAT-A-AAACAATGGGTATTTTGATAACTATGCTATGAGGGCATAACA
1 ATTATTTAGTAAATAATTATAAGAAAC-A-GGGTATTTTCATAACTATGATACGAGGGCATAACA
* * *
12018089 GTCCATTTGGCGACTTGCCAATTTCTTATCAAATAACAAAAAATGCATGTTGGTAATTTCATAGG
64 GTCCATTTGGCGACATGCCAATTTCTTATCAAATAACAAAAAAGGCATGTTGGTAATTGCATAGG
* * * ***
12018154 CGATTGTTTAGTAAATAATTATAAAGGGTGTTTTCATATTATTGGTATGAGGGCATAATAGTCAA
129 CGATTATTTAATAAATAATTATAAAGGGTATTTTCATATTATCAATATGAGGGCATAATAGTCAA
* *
12018219 TTTAGTCACAAGTTAACTTCTGATCATAGAAAATGAAAATGATATTTTGGTAATTTTATATGGAA
194 TTTAGTCACAAGTCAACTTCTGATCATA-AAAATGAAAATGATATTTTGGTAATTTCATATGG-A
* * *
12018284 TTATTTATAAGAATAGTATTTTCGTAATTATAATAAGAGGGCATAATAGTCAATTTGGCCAATGT
257 TTA-TTAAAAGAAGAGTATTTTCATAATTATAATAAGAGGGCATAATAGTCAATTTGGCCAATGT
* *
12018349 CAATTTCTTATCATATAATGAAAGGGCATTTTGGAAATTTCTTAAGGG
321 CAATTTCATATCATATAATGAAAGGGCATTTTGGAAATTTCTTAAGGA
* *
12018397 ATTATTGAGTAAATAATTAAAAGA
1 ATTATTTAGTAAATAATTATAAGA
12018421 GAAGGGGCAT
Statistics
Matches: 322, Mismatches: 55, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
365 51 0.16
366 5 0.02
367 11 0.03
368 81 0.25
369 58 0.18
370 20 0.06
371 52 0.16
372 36 0.11
373 8 0.02
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (368 bp):
ATTATTTAGTAAATAATTATAAGAAACAGGGTATTTTCATAACTATGATACGAGGGCATAACAGT
CCATTTGGCGACATGCCAATTTCTTATCAAATAACAAAAAAGGCATGTTGGTAATTGCATAGGCG
ATTATTTAATAAATAATTATAAAGGGTATTTTCATATTATCAATATGAGGGCATAATAGTCAATT
TAGTCACAAGTCAACTTCTGATCATAAAAATGAAAATGATATTTTGGTAATTTCATATGGATTAT
TAAAAGAAGAGTATTTTCATAATTATAATAAGAGGGCATAATAGTCAATTTGGCCAATGTCAATT
TCATATCATATAATGAAAGGGCATTTTGGAAATTTCTTAAGGA
Found at i:12019106 original size:130 final size:128
Alignment explanation
Indices: 12017913--12020090 Score: 1225
Period size: 130 Copynumber: 17.0 Consensus size: 128
12017903 ATTTCATAGG
* * * * * * * * * *
12017913 TTATAAAAGAAGGGGTATTTTCATAATTATAGTATGAGGGCATGATTGTCCATTTAGTCACAAGT
1 TTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAGAGCATAATAGTTCATTTGGCCACATGT
* * * * *
12017978 CAATTTCATATCATATAATAGAAAGGGCATTTTGG-AATTTCTTGAAGAATTATTTAGTAAATAA
66 CAATTTCTTAGCATATAATAGAAA-GGTATTTTGGTAATTTCAT-AAGGATTATTTAGTAAATAA
* * * * * * * * * *
12018042 TTATAAAACAATG-GGTATTTTGATAACTATGCTATGAGGGCATAACAGTCCATTTGGCGACTTG
1 TTATAAGAGAA-GAGGTATTTTCATAATTATGGTATGAGAGCATAATAGTTCATTTGGCCACATG
* * * * * * * * * *
12018106 CCAATTTCTTATCAAATAACAAAAAATGCATGTTGGTAATTTCATAGGCGATTGTTTAGTAAATA
65 TCAATTTCTTAGCATATAA-TAGAAAGGTATTTTGGTAATTTCATAAG-GATTATTTAGTAAATA
12018171 A
128 A
* * * * *
12018172 TTAT---A-AAG-GGTGTTTTCAT-ATTATTGGTATGAGGGCATAATAG-TCAATTTAGTCACAA
1 TTATAAGAGAAGAGGTATTTTCATAATTA-TGGTATGAGAGCATAATAGTTC-ATTTGGCCACAT
* * * * * * * * *
12018230 GTTAACTTCTGATCATAGAAAATGAAAATGATATTTTGGTAATTTTATATGGA--A--T--T--A
64 GTCAATTTCTTAGCATATAATA-G-AAA-GGTATTTTGGTAATTTCATAAGGATTATTTAGTAAA
12018287 T--
126 TAA
* * ** * *
12018288 TTAT-A-AGAATA-GTATTTTCGTAATTATAATAAGAGGGCATAATAG-TCAATTTGGCCA-ATG
1 TTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAGAGCATAATAGTTC-ATTTGGCCACATG
* * * * *
12018348 TCAATTTCTTATCATATAAT-GAAAGGGCATTTTGGAAATTTCTTAAGGGATTATTGAGTAAATA
65 TCAATTTCTTAGCATATAATAGAAA-GGTATTTTGGTAATTTCATAA-GGATTATTTAGTAAATA
12018412 A
128 A
* * * * ** * * * **
12018413 TTAAAAGAGAAGGGGCATTTCCATAACTT-TGGTATGA-ATGTGTAGTCGTCCATTTGATCACAT
1 TTATAAGAGAAGAGGTATTTTCATAA-TTATGGTATGAGA-GCATAATAGTTCATTTGGCCACAT
* * * * **
12018476 GTCAATTTCTTATCATATAACCA-AAAGGGTATTTTGTTAATTTTATCGACTG-TTATTTAGTAA
64 GTCAATTTCTTAGCATATAA-TAGAAA-GGTATTTTGGTAATTTCAT--AAGGATTATTTAGTAA
12018539 ATAA
125 ATAA
* * ** * * * * * * **
12018543 TTATAAGATG-AGGGGTTTTTTTGTATTTATGCTATGTG-GCATAATAATTAATTTAGCTTCATG
1 TTATAAGA-GAAGAGGTATTTTCATAATTATGGTATGAGAGCATAATAGTTCATTTGGCCACATG
* * * *
12018606 TTAAGTTCTTA-CATATAATGGTAAGTGTATTTTGGTAATTTCATAGAGGATTATTTAGTAAATA
65 TCAATTTCTTAGCATATAATAGAAAG-GTATTTTGGTAATTTCATA-AGGATTATTTAGTAAATA
12018670 A
128 A
* * * * * * * *
12018671 TTATAA-AAAAGGGGTATTCTT-ATAATTATGATAT-AAAGGCATAATTGTCCACTTT-GCAATA
1 TTATAAGAGAAGAGGTATT-TTCATAATTATGGTATGAGA-GCATAATAGTTCA-TTTGGCCACA
* * * * * *
12018732 TGTCAATTTCTTATCATATAATAGAAAGGGCAATTTGGTAATTGCAT-AGG-TAATTTCGT-AAT
63 TGTCAATTTCTTAGCATATAATAGAAA-GGTATTTTGGTAATTTCATAAGGATTATTTAGTAAAT
*
12018794 TA
127 AA
* * * * * * * *
12018796 -TAAAATA-AAGA-ATATTTTCATAATTATGTTATGA-AGACCTAATAG-TCAATTTGGCTAAAA
1 TTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAGAG-CATAATAGTTC-ATTTGGCCACAT
* * * * * *
12018856 GTTAACTTCTTAACATATAATCA-AAAGGTTATTTTGATAATTTGATAAGGGATTATTTAATAAA
64 GTCAATTTCTTAGCATATAAT-AGAAAGG-TATTTTGGTAATTTCATAA-GGATTATTTAGTAAA
12018920 TAA
126 TAA
* * * *
12018923 TTATAA-A-AGGA-GTGTTTTCATAATTAAGGTATGA-AGGCATAATAGTTTATTTGGCCACATG
1 TTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAGA-GCATAATAGTTCATTTGGCCACATG
* * * * * *
12018984 TCAATATCTTAGCATATACTAGAAAGGCTATTCTAGTAATTTCATACATGATTTTTTAGTAAATA
65 TCAATTTCTTAGCATATAATAGAAAGG-TATTTTGGTAATTTCATA-AGGATTATTTAGTAAATA
12019049 A
128 A
* * * * *
12019050 TTATAAAAGATGAGGTGTTTTCGTAATTATGGTATGAGAGCATAATAGTTCATTTGGCCACACGT
1 TTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAGAGCATAATAGTTCATTTGGCCACATGT
* * * * *
12019115 CAATTTCTT-GTCATATAACAAAAAGGTCAATTTGGTAATTT-AT-TGGTAATTATTTAGTTAAT
66 CAATTTCTTAG-CATATAATAGAAAGGT-ATTTTGGTAATTTCATAAGG--ATTATTTAGTAAAT
12019177 AA
127 AA
* ** * * * *
12019179 TTATAAGGGAATG-GGTATTTTTGTATTTATGGTATGAGAGAATAATAGTTAATTTAGCCACATG
1 TTATAAGAGAA-GAGGTATTTTCATAATTATGGTATGAGAGCATAATAGTTCATTTGGCCACATG
* * ** *
12019243 TTAATTT-TTTGTCATATAATAGAAAGGTTATTTTTATAATTTCATAGTGGATTATTTAGTAAAT
65 TCAATTTCTTAG-CATATAATAGAAAGG-TATTTTGGTAATTTCATA-AGGATTATTTAGTAAAT
12019307 AA
127 AA
* * * * * * * * * *
12019309 TTATAAGGGAAG-GATATTTTCGTAATTATAGTATAAGGGCATAA-AATTACATTT-GACATAAG
1 TTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAGAGCATAATAGTT-CATTTGGCCACATG
* * **
12019371 TCAATTTCTTATG-ATATAATGGAAAGGTTATTTTGGTAATTTCTTAGAGGATTATTTCTTAAAT
65 TCAATTTCTTA-GCATATAATAGAAAGG-TATTTTGGTAATTTCATA-AGGATTATTTAGTAAAT
12019435 AA
127 AA
** * * * * * * * *
12019437 TTATTGGAGAAAATGTATTTTTATAATTATGATATGAGGGCATTATA-ATCTATTTGGCCAGATG
1 TTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAGAGCATAATAGTTC-ATTTGGCCACATG
* ** *
12019501 TCAATTTCTTATCATATAAT-GAAAAGAGTATTTTCATAATTAT-ATAAGGGATTACTTAGTAAA
65 TCAATTTCTTAGCATATAATAG-AAAG-GTATTTTGGTAATT-TCATAA-GGATTATTTAGTAAA
12019564 TAA
126 TAA
* * * * * * *
12019567 TTGTTAGAGAAAAGGTATTTTCGTAATTATGGCATCAGAGCATAATAGTTCATTTGGCTACATGT
1 TTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAGAGCATAATAGTTCATTTGGCCACATGT
* * * * *
12019632 CAATTTCTTATCATATAATAGAAAAGGCAGTTTGGTAATTTCTTAAGGGATTATTTACTAAATAA
66 CAATTTCTTAGCATATAATAG-AAAGGTATTTTGGTAATTTCATAA-GGATTATTTAGTAAATAA
* * * * **
12019697 TTATAAGGGAAGGGGTATTTTCATAATTATAGTATGAG-GTCATAATAGTCCATTTGGCTTCATG
1 TTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAGAG-CATAATAGTTCATTTGGCCACATG
* * * *
12019761 GCAATTTCTTATCATATAATAGAAAGGTCATTTTGGTAATTTCATAAGGGATTATTTACTAAAGA
65 TCAATTTCTTAGCATATAATAGAAAGGT-ATTTTGGTAATTTCATAA-GGATTATTTAGTAAATA
12019826 A
128 A
* * * * * *
12019827 TTATAAGAGAAG-GGTATTTTCATAAATATGGCATGGGGGCATAATA-CTCAATTTTGCCACATG
1 TTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAGAGCATAATAGTTC-ATTTGGCCACATG
* * * * * *
12019890 TTAACTTCTTATCATATAATGGAAATGTATTTTGGTAATTTCATATGCGATTATTTAGTAAATAA
65 TCAATTTCTTAGCATATAATAGAAAGGTATTTTGGTAATTTCATAAG-GATTATTTAGTAAATAA
* * * * * * * *
12019955 TTAT-AGGGAA-AGAGTAATTTT-GTAATTATGGTA-CAAAGGCATAACACTCCATTTGGTCACA
1 TTATAAGAGAAGAG-GT-ATTTTCATAATTATGGTATGAGA-GCATAATAGTTCATTTGGCCACA
* * * * * * *
12020016 TATCAATTTCTTATCATAAAATGGGAAGGGTATTTTGGTAATTTCATAAGGAATTATTTGGCAAA
63 TGTCAATTTCTTAGCATATAAT-AGAAAGGTATTTTGGTAATTTCATAAGG-ATTATTTAG-TAA
12020081 ATAA
125 ATAA
12020085 TTATAA
1 TTATAA
12020091 TGGTTATTTT
Statistics
Matches: 1590, Mismatches: 350, Indels: 216
0.74 0.16 0.10
Matches are distributed among these distances:
114 18 0.01
115 4 0.00
116 4 0.00
117 19 0.01
118 38 0.02
119 4 0.00
120 1 0.00
121 1 0.00
122 10 0.01
123 63 0.04
124 16 0.01
125 58 0.04
126 23 0.01
127 153 0.10
128 259 0.16
129 426 0.27
130 475 0.30
131 14 0.01
132 4 0.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (128 bp):
TTATAAGAGAAGAGGTATTTTCATAATTATGGTATGAGAGCATAATAGTTCATTTGGCCACATGT
CAATTTCTTAGCATATAATAGAAAGGTATTTTGGTAATTTCATAAGGATTATTTAGTAAATAA
Found at i:12019869 original size:518 final size:516
Alignment explanation
Indices: 12019039--12020038 Score: 1197
Period size: 518 Copynumber: 1.9 Consensus size: 516
12019029 ACATGATTTT
** * * *
12019039 TTAGTAAATAATTATAAAAGATGAGGTGTTTTCGTAATTATGGTATGAGAGCATAATAGTTCATT
1 TTAGTAAATAATTATAAAAGAAAAGGTATTTTCGTAATTATGGCATCAGAGCATAATAGTTCATT
*
12019104 TGGCCACACGTCAATTTCTTGTCATATAACAAAAAGGTCAATTTGGTAATTTATTGGTAATTATT
66 TGGCCACACGTCAATTTCTTATCATATAACAAAAAGGTCAATTTGGTAATTTATTGGTAATTATT
* * * ** * * *
12019169 TAGTTAATAATTATAAGGGAATGGGTATTTTTGTATTTATGGTATGAGAGAATAATAGTTAATTT
131 TACTAAATAATTATAAGGGAAGGGGTATTTTCATAATTATAGTATGAGAGAATAATAGTCAATTT
** * * * *
12019234 AGCCACATGTTAATTTTTTGTCATATAATAGAAAGGTTATTTTTATAATTTCATAGTGGATTATT
196 AGCCACATGGCAATTTCTTATCATATAATAGAAAGGTCATTTTGATAATTTCATAGTGGATTATT
* * * * * * *
12019299 TAGTAAATAATTATAAGGGAAGGATATTTTCGTAATTATAGTATAAGGGCATAAAA-TTACA-TT
261 TACTAAAGAATTATAAGAGAAGGATATTTTCATAAATATAGCATAAGGGCATAAAACTCA-ATTT
* * * * *
12019362 TGACATAAGTCAATTTCTTATGATATAATGGAAAGGTTATTTTGGTAATTTCTTA-GAGGATTAT
325 TGACACAAGTCAACTTCTTATCATATAATGGAAAGG-TATTTTGGTAATTTCATATG-CGATTAT
** * * ** * * * *
12019426 TTCTTAAATAATTATTGGAGAAA-ATGTATTTTTATAATTATGATATGAGGGCATTATAATCTAT
388 TTAGTAAATAATTATAGG-GAAAGA-GTAATTTTATAATTATGATACAAAGGCATAACAATCCAT
* * *
12019490 TTGGCCAGATGTCAATTTCTTATCATATAATGAAAAGAGTATTTTCATAATTATATAAGGGATTA
451 TTGGCCACATATCAATTTCTTATCATAAAATGAAAAGAGTATTTTCATAATTATATAAGGGATTA
12019555 C
516 C
* * *
12019556 TTAGTAAATAATTGTTAGAGAAAAGGTATTTTCGTAATTATGGCATCAGAGCATAATAGTTCATT
1 TTAGTAAATAATTATAAAAGAAAAGGTATTTTCGTAATTATGGCATCAGAGCATAATAGTTCATT
* * * * * *
12019621 TGGCTACATGTCAATTTCTTATCATATAATAGAAAAGG-CAGTTTGGTAATTTCTTAAGG-GATT
66 TGGCCACACGTCAATTTCTTATCATATAACA-AAAAGGTCAATTTGGTAATTTATT--GGTAATT
* *
12019684 ATTTACTAAATAATTATAAGGGAAGGGGTATTTTCATAATTATAGTATGAG-GTCATAATAGTCC
128 ATTTACTAAATAATTATAAGGGAAGGGGTATTTTCATAATTATAGTATGAGAG-AATAATAGTCA
* ** *
12019748 ATTTGGCTTCATGGCAATTTCTTATCATATAATAGAAAGGTCATTTTGGTAATTTCATAAG-GGA
192 ATTTAGCCACATGGCAATTTCTTATCATATAATAGAAAGGTCATTTTGATAATTTCAT-AGTGGA
* * ** *
12019812 TTATTTACTAAAGAATTATAAGAGAAGGGTATTTTCATAAATATGGCATGGGGGCATAATACTCA
256 TTATTTACTAAAGAATTATAAGAGAAGGATATTTTCATAAATATAGCATAAGGGCATAAAACTCA
* * * *
12019877 ATTTTGCCACATGTTAACTTCTTATCATATAATGGAAATGTATTTTGGTAATTTCATATGCGATT
321 ATTTTGACACAAGTCAACTTCTTATCATATAATGGAAAGGTATTTTGGTAATTTCATATGCGATT
* * *
12019942 ATTTAGTAAATAATTATAGGGAAAGAGTAATTTTGTAATTATGGTACAAAGGCATAACACTCCAT
386 ATTTAGTAAATAATTATAGGGAAAGAGTAATTTTATAATTATGATACAAAGGCATAACAATCCAT
*
12020007 TTGGTCACATATCAATTTCTTATCATAAAATG
451 TTGGCCACATATCAATTTCTTATCATAAAATG
12020039 GGAAGGGTAT
Statistics
Matches: 401, Mismatches: 73, Indels: 18
0.82 0.15 0.04
Matches are distributed among these distances:
517 161 0.40
518 202 0.50
519 38 0.09
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.39
Consensus pattern (516 bp):
TTAGTAAATAATTATAAAAGAAAAGGTATTTTCGTAATTATGGCATCAGAGCATAATAGTTCATT
TGGCCACACGTCAATTTCTTATCATATAACAAAAAGGTCAATTTGGTAATTTATTGGTAATTATT
TACTAAATAATTATAAGGGAAGGGGTATTTTCATAATTATAGTATGAGAGAATAATAGTCAATTT
AGCCACATGGCAATTTCTTATCATATAATAGAAAGGTCATTTTGATAATTTCATAGTGGATTATT
TACTAAAGAATTATAAGAGAAGGATATTTTCATAAATATAGCATAAGGGCATAAAACTCAATTTT
GACACAAGTCAACTTCTTATCATATAATGGAAAGGTATTTTGGTAATTTCATATGCGATTATTTA
GTAAATAATTATAGGGAAAGAGTAATTTTATAATTATGATACAAAGGCATAACAATCCATTTGGC
CACATATCAATTTCTTATCATAAAATGAAAAGAGTATTTTCATAATTATATAAGGGATTAC
Found at i:12020793 original size:129 final size:128
Alignment explanation
Indices: 12020355--12021108 Score: 451
Period size: 129 Copynumber: 5.9 Consensus size: 128
12020345 GGTATTTCAA
* * * * * *
12020355 TAATTTTATAGGGGATTAGTTAGTAAATAATTATAAAATAAGAGGTATTTTCATAATTATGGTAT
1 TAATTTAATAAGGGATTATTTAGTAAATAATTATAAAAGAAAAGGTATTTTCATAATTAT-GAAT
* ** * **
12020420 GAAAGCTTAATAG-TCAATTTGGCCCCATGTAAATTTCTTATCATATAAT-GCAAA-AGGCTTTT
65 G-AGGGATAATAGTTC-ATTTGGCCACATGTAAATTTCTTATCATATAATAG-AAATAGTATTTT
12020482 GG
127 GG
** * * * *
12020484 TAATTTCTTAAGGAATTATTTAATAAATAATTATAAAAGAAGAGGTATTTTCATAATTATG--TT
1 TAATTTAATAAGGGATTATTTAGTAAATAATTATAAAAGAAAAGGTATTTTCATAATTATGAATG
* * * * * * *
12020547 A-TGATGACAGTCCATTTGGCCACATGTCAATTTCTTTTCATATAATAG--ATGGGTATTTTGG
66 AGGGATAATAGTTCATTTGGCCACATGTAAATTTCTTATCATATAATAGAAAT-AGTATTTTGG
* * *
12020608 TAATTTAATAAGGGATTATTTAGT-AATAATTATAAGAG-AATGGTTATTTT-GTAATTATGGAA
1 TAATTTAATAAGGGATTATTTAGTAAATAATTATAAAAGAAAAGG-TATTTTCATAATTAT-GAA
* ** *
12020670 TGAGGGAATAATAGTTCAGTTGGCCACATGTAAATTTCTTATCATGCAATAGAAATTGTATTTTG
64 TGAGGG-ATAATAGTTCATTTGGCCACATGTAAATTTCTTATCATATAATAGAAATAGTATTTTG
12020735 G
128 G
* * * * * *
12020736 AAATTTGATAGGGGATTATTCAGTAAATAATTATAAGAGAAAAGGTA-TTTCGTAATTATGATAT
1 TAATTTAATAAGGGATTATTTAGTAAATAATTATAAAAGAAAAGGTATTTTCATAATTATGA-AT
* * * * ** * * * * * * *
12020800 GAGGGCACATTTGTTAATTTCACCACATGTCAATTTCTTATTATATAATGGAAA-GGAATTATAG
65 GAGGG-ATAATAGTTCATTTGGCCACATGTAAATTTCTTATCATATAATAGAAATAGTATTTTGG
** * ** ** * * *
12020864 TAATTTCTTATGGGATTATTTAGTAAATAATTATAAGTGAAGGGGTATCTTCATACTTATGTTAT
1 TAATTTAATAAGGGATTATTTAGTAAATAATTATAAAAGAAAAGGTATTTTCATAATTATG-AAT
* * * * * * * * * **
12020929 GAGGGCATGATTG-TCTATTTGGCCTCATATCAATTTTTTATCGTATAATGGATAGGGTATTTTG
65 GAGGG-ATAATAGTTC-ATTTGGCCACATGTAAATTTCTTATCATATAATAGAAATAGTATTTTG
12020993 G
128 G
* ** * * * **
12020994 TAATTT-CTTTGAGTATTATTTAGTAACTAATTATAAAAG-AAGGTGTATTTTTGTAATTATGAT
1 TAATTTAATAAG-GGATTATTTAGTAAATAATTATAAAAGAAAAG-GTATTTTCATAATTATGA-
* ** * ** * *
12021057 ATAAGGGCATAATAGAACATTTGGACACATGCCACTTTCTCATCATATAATA
63 ATGAGGG-ATAATAGTTCATTTGGCCACATGTAAATTTCTTATCATATAATA
12021109 TAATGGGTAG
Statistics
Matches: 488, Mismatches: 113, Indels: 47
0.75 0.17 0.07
Matches are distributed among these distances:
122 11 0.02
123 20 0.04
124 61 0.12
125 5 0.01
126 2 0.00
127 37 0.08
128 81 0.17
129 180 0.37
130 90 0.18
131 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (128 bp):
TAATTTAATAAGGGATTATTTAGTAAATAATTATAAAAGAAAAGGTATTTTCATAATTATGAATG
AGGGATAATAGTTCATTTGGCCACATGTAAATTTCTTATCATATAATAGAAATAGTATTTTGG
Found at i:12021513 original size:129 final size:129
Alignment explanation
Indices: 12021229--12021564 Score: 306
Period size: 129 Copynumber: 2.6 Consensus size: 129
12021219 AGAGTTATTT
* ** * * * * * *
12021229 TGATATAAGGGAATAATGGTCCATTTGGCCACATGTCAACTTTTTATTATTTAATGCAAAAGGTA
1 TGATATAAGGAAATAAAAGTCAATTTGGCCACATGTCAAATTCTTATCATATAATGGAAAAGGTA
* * * *
12021294 TGTTGGTAATTTAATAAGGCATTATTTAGTCATAATTATAAAAAAAAGGGCTATTTTCTAATTA
66 TTTTAGTAATTTCATAAGGCATTATTTAGTCATAATGATAAAAAAAAGGGCTATTTTCTAATTA
* * * * * *
12021358 TGTTATAAGGAAATTATAGTCCATTTGGTCACATGTCAAATTCTTATCAGATAATGGAAAAGGTA
1 TGATATAAGGAAATAAAAGTCAATTTGGCCACATGTCAAATTCTTATCATATAATGGAAAAGGTA
* * * * *
12021423 TTTTAGTAATTTCATAGGGGATT-TTTAGT-A-AATGATTACAATAGAAGGGGTATTTTCATAAT
66 TTTTAGTAATTTCATAAGGCATTATTTAGTCATAATGA-TA-AAAAAAAGGGCTATTTTC-TAAT
12021485 TA
128 TA
* * ** * *
12021487 TGATATAAAGG-CATAAAAGTCAATTT-GCCAACATCTGGATTTCTTATCATATAATGGAAAGGG
1 TGATAT-AAGGAAATAAAAGTCAATTTGGCC-ACATGTCAAATTCTTATCATATAATGGAAAAGG
12021550 TATTTTTA-TAATTTC
64 TA-TTTTAGTAATTTC
12021565 TTAATGGTTT
Statistics
Matches: 169, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
126 4 0.02
127 3 0.02
128 23 0.14
129 130 0.77
130 9 0.05
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (129 bp):
TGATATAAGGAAATAAAAGTCAATTTGGCCACATGTCAAATTCTTATCATATAATGGAAAAGGTA
TTTTAGTAATTTCATAAGGCATTATTTAGTCATAATGATAAAAAAAAGGGCTATTTTCTAATTA
Found at i:12021919 original size:129 final size:129
Alignment explanation
Indices: 12021662--12022542 Score: 342
Period size: 130 Copynumber: 6.9 Consensus size: 129
12021652 GAGAATCGTG
** * *
12021662 GTAATTTCATAGGGGATTATTTAGTAAATAATTATAAGAGAAAGTGTATTTTCTTAATAATGATA
1 GTAATTTCATAGGGGATTATTTAGTAAATAACGATAAGAGAAAGGGTATTTTCTAAATAATGATA
* ** * *
12021727 TAAGGCACAATTATCCATTTGGCCACGTGTCAATTTCTTATCATATAACGAAAAAGGTATTTCA
66 GAAGGCACAACAATCCATTTGACCACATGTCAATTTCTTATCATATAACGAAAAAGGTATTTCA
* *
12021791 GTAATTTTATAGGGGATTATTTAGTAAATAACGATAAGA-ACTAGGGTATTTTTCATAAAT-ATG
1 GTAATTTCATAGGGGATTATTTAGTAAATAACGATAAGAGA-AAGGGTA-TTTTC-TAAATAATG
* * * * * * *
12021854 ATACGATGGCATAACAATCCATTTGACCACATGTTATTTTCTTATCATATAATG-TAATGG----
63 ATA-GAAGGCACAACAATCCATTTGACCACATGTCAATTTCTTATCATATAACGAAAAAGGTATT
12021914 ---
127 TCA
* * * ** * * *
12021914 G---TTTCATATGGGATTATATAGTGAATAATTATAAGAG-AGGGGTATTTTC-ATAATTATGGT
1 GTAATTTCATAGGGGATTATTTAGTAAATAACGATAAGAGAAAGGGTATTTTCTA-AATAATGAT
* * * * * ** *
12021974 ATGAGGGCATAATAGTCCATTTGGCTGCATGGCAACTTT-TTATCATATAACG-AAAAGGATATT
65 A-GAAGGCACAACAATCCATTTGACCACATGTCAA-TTTCTTATCATATAACGAAAAAGG-TATT
*
12022037 T-T
127 TCA
* * ** * * *
12022039 GATAATTTTATAGGGGATTATTTAATAAATAATTATAAGAGAATGGGTATTTTC-ATAGTTAT-A
1 G-TAATTTCATAGGGGATTATTTAGTAAATAACGATAAGAGAAAGGGTATTTTCTA-AATAATGA
* * * * * * * * **
12022102 GTACAAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGGCGTT
64 -TAGAA-GGCACAACAATCCATTTGACCACATGTCAATTTCTTATCATATAACGAAAAAGGTATT
**
12022167 TTG
127 TCA
* * * ** * * *
12022170 GAAATTTC-TCGAGGAATTATTTAGTAAATAATTATAA-ATAATGGGTATTTTC-ATAATTAT-A
1 GTAATTTCATAG-GGGATTATTTAGTAAATAACGATAAGAGAAAGGGTATTTTCTA-AATAATGA
* * * * * * *
12022231 GTATGAGGGCATAATAGTCAATTTGGCCACTTGTCAATTTCTTATCATATAAC-AAAAATGGTTA
64 -TA-GAAGGCACAACAATCCATTTGACCACATGTCAATTTCTTATCATATAACGAAAAA-GG-TA
**
12022295 TTTTG
125 TTTCA
* * ** * *** * * * *
12022300 GTAATTTTATTGAAGATTATTTTGTAAATAGTTATAAGAGAAGGGGTATTTTC-ATATTTATGGT
1 GTAATTTCATAGGGGATTATTTAGTAAATAACGATAAGAGAAAGGGTATTTTCTA-AATAATGAT
* * * * * * * * *** * *
12022364 ATG-TGTGCATAATAGTCAATTT-AGTCACAAGTTAGCATCCTATCATATAATGAAAAAGGTATT
65 A-GAAG-GCACAACAATCCATTTGA-CCACATGTCAATTTCTTATCATATAACGAAAAAGGTATT
**
12022427 TTG
127 TCA
* * *** * * * *
12022430 GTAATTTCATATGGGATTATTTAGCAAATATTTAGAAGAGAAAGGTTATTTTTTAAATTATGATA
1 GTAATTTCATAGGGGATTATTTAGTAAATAACGATAAGAGAAAGGGTATTTTCTAAATAATGATA
* * *** *
12022495 TGAAGGTATAATTGTCCATTTGGCCACATGTCAATTTCTTATCATATA
66 -GAAGGCACAACAATCCATTTGACCACATGTCAATTTCTTATCATATA
12022543 CTGAAAAGAA
Statistics
Matches: 591, Mismatches: 123, Indels: 75
0.75 0.16 0.10
Matches are distributed among these distances:
116 1 0.00
117 3 0.01
118 50 0.08
119 8 0.01
120 29 0.05
123 1 0.00
125 1 0.00
128 4 0.01
129 148 0.25
130 227 0.38
131 114 0.19
132 5 0.01
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.38
Consensus pattern (129 bp):
GTAATTTCATAGGGGATTATTTAGTAAATAACGATAAGAGAAAGGGTATTTTCTAAATAATGATA
GAAGGCACAACAATCCATTTGACCACATGTCAATTTCTTATCATATAACGAAAAAGGTATTTCA
Found at i:12022169 original size:130 final size:131
Alignment explanation
Indices: 12021923--12022549 Score: 610
Period size: 130 Copynumber: 4.8 Consensus size: 131
12021913 GGTTTCATAT
* * *
12021923 GGGATTATATAGTGAATAATTATAAGAG-AGGGGTATTTTCATAATTATGGTATGAGGGCATAAT
1 GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAGTATGAGGGCATAAT
** * *
12021987 AGTCCATTTGGCTGCATGGCAACTTT-TTATCATATAACG-AAAAGGATATTTTGATAATTTTAT
66 AGTCCATTTGGCCACATGTCAA-TTTCTTATCATATAATGAAAAAGGATATTTTGATAATTTTAT
12022050 AG
130 AG
* * * **
12022052 GGGATTATTTAATAAATAATTATAAGAGAATGGGTATTTTCATAGTTATAGTACAAGGGCATAAT
1 GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAGTATGAGGGCATAAT
* * * * *
12022117 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGGCGT-TTTGGA-AA-TTTCT
66 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAAGG-ATATTTTGATAATTTTAT
*
12022179 CG
130 AG
* * *
12022181 AGGAATTATTTAGTAAATAATTATAA-ATAATGGGTATTTTCATAATTATAGTATGAGGGCATAA
1 -GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAGTATGAGGGCATAA
* * * * *
12022245 TAGTCAATTTGGCCACTTGTCAATTTCTTATCATATAA-CAAAAATGGTTATTTTGGTAATTTTA
65 TAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAA-GGATATTTTGATAATTTTA
*
12022309 TTG
129 TAG
** * * * * * *
12022312 AAGATTATTTTGTAAATAGTTATAAGAGAAGGGGTATTTTCATATTTATGGTATGTGTGCATAAT
1 GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAGTATGAGGGCATAAT
* * * * * *** * * *
12022377 AGTCAATTTAGTCACAAGTTAGCATCCTATCATATAATGAAAAAGG-TATTTTGGTAATTTCATA
66 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAAGGATATTTTGATAATTTTATA
*
12022441 T
131 G
* * * * * * * *
12022442 GGGATTATTTAGCAAATATTTAGAAGAGAAAGGTTATTTT-TTAAATTAT-GATATGAAGGTATA
1 GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCAT-AATTATAG-TATGAGGGCATA
* *
12022505 ATTGTCCATTTGGCCACATGTCAATTTCTTATCATATACTGAAAA
64 ATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGAAAA
12022550 GAATTCATGA
Statistics
Matches: 403, Mismatches: 82, Indels: 25
0.79 0.16 0.05
Matches are distributed among these distances:
128 4 0.01
129 111 0.28
130 204 0.51
131 78 0.19
132 6 0.01
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (131 bp):
GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAGTATGAGGGCATAAT
AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAAGGATATTTTGATAATTTTATA
G
Found at i:12022411 original size:260 final size:258
Alignment explanation
Indices: 12021664--12022542 Score: 699
Period size: 260 Copynumber: 3.4 Consensus size: 258
12021654 GAATCGTGGT
* * * * *
12021664 AATTTCATAGGGGATTATTTAGTAAATAATTATAAGAGAAAGTGTATTTTCTTAATAATGATAT-
1 AATTTCATATGGAATTATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCATAATTATG-TATG
* * * *
12021728 AAGGCACAATTA-TCCATTTGGCCACGTGTCAATTTCTTATCATATAACGAAAAAGG-TA-TTTC
64 AGGGCATAA-TAGTCCATTTGGCCACATGTCAATTTCTTATCATATAAC-AAAAAGGATATTTTG
** * ** **
12021790 AGTAATTTTATAGGGGATTATTTAGTAAATAACGATAAGA-ACTA-GGGTATTTTTCATAAATAT
127 A-TAATTTTATAGAAGATTATTTAATAAATAATTATAAGAGA--AGGGGTA-TTTTCATAGTTAT
* * * * * * * *** * *
12021853 -GATACGATGGCATAACAATCCATTT-GACCACATGTTATTTTCTTATCATATAATG---TA---
188 AG-TACAAGGGCATAATAGTCAATTTAG-CCACAAGTCAACATCCTATCATATAATGAAAAAGGC
12021910 A---TGG-
251 ATTTTGGA
* * * * * *
12021914 -GTTTCATATGGGATTATATAGTGAATAATTATAAGAGAGGGGTATTTTCATAATTATGGTATGA
1 AATTTCATATGGAATTATTTAGTAAATAATTATAAGAAAAGGGTATTTTCATAATTAT-GTATGA
** * *
12021978 GGGCATAATAGTCCATTTGGCTGCATGGCAACTTT-TTATCATATAACGAAAAGGATATTTTGAT
65 GGGCATAATAGTCCATTTGGCCACATGTCAA-TTTCTTATCATATAACAAAAAGGATATTTTGAT
** *
12022042 AATTTTATAGGGGATTATTTAATAAATAATTATAAGAGAATGGGTATTTTCATAGTTATAGTACA
129 AATTTTATAGAAGATTATTTAATAAATAATTATAAGAGAAGGGGTATTTTCATAGTTATAGTACA
* * * ** * * * *
12022107 AGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGGCGTTTTGGA
194 AGGGCATAATAGTCAATTTAGCCACAAGTCAACATCCTATCATATAATGAAAAAGGCATTTTGGA
*
12022172 AATTTC-TCGA-GGAATTATTTAGTAAATAATTATAA-ATAATGGGTATTTTCATAATTATAGTA
1 AATTTCAT--ATGGAATTATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCATAATTAT-GTA
* * *
12022234 TGAGGGCATAATAGTCAATTTGGCCACTTGTCAATTTCTTATCATATAACAAAAATGGTTATTTT
62 TGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAACAAAAA-GGATATTTT
* * ** * * *
12022299 GGTAATTTTATTGAAGATTATTTTGTAAATAGTTATAAGAGAAGGGGTATTTTCATATTTATGGT
126 GATAATTTTATAGAAGATTATTTAATAAATAATTATAAGAGAAGGGGTATTTTCATAGTTATAGT
*** * * * * *
12022364 ATGTGTGCATAATAGTCAATTTAGTCACAAGTTAGCATCCTATCATATAATGAAAAAGGTATTTT
191 ACAAGGGCATAATAGTCAATTTAGCCACAAGTCAACATCCTATCATATAATGAAAAAGGCATTTT
*
12022429 GGT
256 GGA
* * * * * *
12022432 AATTTCATATGGGATTATTTAGCAAATATTTAGAAGAGAAAGGTTATTTT-TTAAATTATGATAT
1 AATTTCATATGGAATTATTTAGTAAATAATTATAAGA-AAAGGGTATTTTCAT-AATTATG-TAT
* * *
12022496 GAAGGTATAATTGTCCATTTGGCCACATGTCAATTTCTTATCATATA
63 GAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATA
12022543 CTGAAAAGAA
Statistics
Matches: 512, Mismatches: 86, Indels: 51
0.79 0.13 0.08
Matches are distributed among these distances:
248 84 0.16
249 112 0.22
250 8 0.02
257 3 0.01
258 5 0.01
259 94 0.18
260 143 0.28
261 63 0.12
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.38
Consensus pattern (258 bp):
AATTTCATATGGAATTATTTAGTAAATAATTATAAGAAAAGGGTATTTTCATAATTATGTATGAG
GGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAACAAAAAGGATATTTTGATAA
TTTTATAGAAGATTATTTAATAAATAATTATAAGAGAAGGGGTATTTTCATAGTTATAGTACAAG
GGCATAATAGTCAATTTAGCCACAAGTCAACATCCTATCATATAATGAAAAAGGCATTTTGGA
Found at i:12028129 original size:21 final size:21
Alignment explanation
Indices: 12028105--12028151 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
12028095 GATGGTTGGA
*
12028105 AAAAACCAAA-AAAAGACAAAC
1 AAAAACAAAATAAAAGA-AAAC
*
12028126 AAAAAGAAAATAAAAGAAAAC
1 AAAAACAAAATAAAAGAAAAC
12028147 AAAAA
1 AAAAA
12028152 AGTAAAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.81, C:0.11, G:0.06, T:0.02
Consensus pattern (21 bp):
AAAAACAAAATAAAAGAAAAC
Found at i:12028131 original size:12 final size:11
Alignment explanation
Indices: 12028114--12028165 Score: 52
Period size: 12 Copynumber: 4.5 Consensus size: 11
12028104 AAAAAACCAA
12028114 AAAAAGACAAAC
1 AAAAAGA-AAAC
12028126 AAAAAGAAAA-
1 AAAAAGAAAAC
*
12028136 TAAAAGAAAAC
1 AAAAAGAAAAC
12028147 AAAAAAGTAAAAAC
1 -AAAAAG--AAAAC
12028161 AAAAA
1 AAAAA
12028166 AATGATGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
10 9 0.26
11 3 0.09
12 12 0.35
13 5 0.15
14 5 0.15
ACGTcount: A:0.81, C:0.08, G:0.08, T:0.04
Consensus pattern (11 bp):
AAAAAGAAAAC
Found at i:12028152 original size:22 final size:23
Alignment explanation
Indices: 12028115--12028158 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
12028105 AAAAACCAAA
12028115 AAAAGACAAACAAAAAG-AAAAT
1 AAAAGACAAACAAAAAGTAAAAT
12028137 AAAAGA-AAACAAAAAAGTAAAA
1 AAAAGACAAAC-AAAAAGTAAAA
12028159 ACAAAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 12 0.60
23 4 0.20
ACGTcount: A:0.80, C:0.07, G:0.09, T:0.05
Consensus pattern (23 bp):
AAAAGACAAACAAAAAGTAAAAT
Found at i:12028152 original size:35 final size:38
Alignment explanation
Indices: 12028106--12028189 Score: 97
Period size: 35 Copynumber: 2.3 Consensus size: 38
12028096 ATGGTTGGAA
*
12028106 AAAACCAAAAAAAG-ACAAACAAAAAGAA-AAT-AAAA-G
1 AAAA-CAAAAAAAGTAAAAACAAAAA-AATAATGAAAATG
*
12028142 AAAAC-AAAAAAGTAAAAACAAAAAAATGATGAAAATG
1 AAAACAAAAAAAGTAAAAACAAAAAAATAATGAAAATG
12028179 AAAACAAAAAA
1 AAAACAAAAAA
12028190 GAAGAAGAGC
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
34 9 0.22
35 13 0.32
36 8 0.20
37 6 0.15
38 5 0.12
ACGTcount: A:0.77, C:0.08, G:0.08, T:0.06
Consensus pattern (38 bp):
AAAACAAAAAAAGTAAAAACAAAAAAATAATGAAAATG
Found at i:12028182 original size:37 final size:34
Alignment explanation
Indices: 12028113--12028192 Score: 99
Period size: 37 Copynumber: 2.3 Consensus size: 34
12028103 GAAAAAACCA
*
12028113 AAAAAAGACAAACAAAAAGAAAATAAAAGAAAAC
1 AAAAAAGAAAAACAAAAAGAAAATAAAAGAAAAC
*
12028147 AAAAAAGTAAAAACAAAAA-AATGATGAAAATGAAAAC
1 AAAAAAG-AAAAACAAAAAGAA-AAT-AAAA-GAAAAC
12028184 AAAAAAGAA
1 AAAAAAGAA
12028193 GAAGAGCTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
34 9 0.22
35 12 0.30
36 6 0.15
37 13 0.32
ACGTcount: A:0.78, C:0.06, G:0.10, T:0.06
Consensus pattern (34 bp):
AAAAAAGAAAAACAAAAAGAAAATAAAAGAAAAC
Found at i:12029041 original size:17 final size:18
Alignment explanation
Indices: 12029021--12029107 Score: 67
Period size: 17 Copynumber: 4.9 Consensus size: 18
12029011 TCAGTGAAAG
12029021 AAGAAAAA-AAATGAAGA
1 AAGAAAAAGAAATGAAGA
12029038 AAGAAAAA-AAA-G-AGA
1 AAGAAAAAGAAATGAAGA
12029053 AA-AAAAATGAAATGAAAGAA
1 AAGAAAAA-GAAATG-AAG-A
* * *
12029073 AATAAAGAATAAAAGAAGA
1 AAGAAA-AAGAAATGAAGA
*
12029092 AAAAAAAAGAAATGAA
1 AAGAAAAAGAAATGAA
12029108 TGGGTGAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
14 5 0.09
15 5 0.09
16 4 0.07
17 12 0.21
18 8 0.14
19 8 0.14
20 6 0.11
21 7 0.12
22 2 0.04
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (18 bp):
AAGAAAAAGAAATGAAGA
Found at i:12029046 original size:15 final size:15
Alignment explanation
Indices: 12029026--12029074 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 15
12029016 GAAAGAAGAA
12029026 AAAAAATGAAGAAAG
1 AAAAAATGAAGAAAG
12029041 AAAAAA--AAGAGAA-
1 AAAAAATGAAGA-AAG
12029054 AAAAAATGAAATGAAAG
1 AAAAAATG-AA-GAAAG
12029071 AAAA
1 AAAA
12029075 TAAAGAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 10 0.36
14 2 0.07
15 6 0.21
16 4 0.14
17 6 0.21
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.06
Consensus pattern (15 bp):
AAAAAATGAAGAAAG
Found at i:12029061 original size:28 final size:30
Alignment explanation
Indices: 12029017--12029080 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
12029007 CCACTCAGTG
12029017 AAAGAAGAAAAAAAATG-AA-GAAAGAAAAA
1 AAAG-AGAAAAAAAATGAAATGAAAGAAAAA
*
12029046 AAAGAGAAAAAAAATGAAATGAAAGAAAAT
1 AAAGAGAAAAAAAATGAAATGAAAGAAAAA
12029076 AAAGA
1 AAAGA
12029081 ATAAAAGAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 12 0.38
29 6 0.19
30 14 0.44
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (30 bp):
AAAGAGAAAAAAAATGAAATGAAAGAAAAA
Found at i:12029070 original size:21 final size:20
Alignment explanation
Indices: 12029046--12029107 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 20
12029036 GAAAGAAAAA
12029046 AAAGAGAAAAAAAATGAAATG
1 AAAGA-AAAAAAAATGAAATG
*
12029067 AAAGAAAATAAAGAAT-AAAAG
1 AAAGAAAA-AAA-AATGAAATG
12029088 -AAGAAAAAAAAA-GAAATG
1 AAAGAAAAAAAAATGAAATG
12029106 AA
1 AA
12029108 TGGGTGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
18 6 0.17
19 4 0.11
20 10 0.29
21 12 0.34
22 3 0.09
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (20 bp):
AAAGAAAAAAAAATGAAATG
Found at i:12029081 original size:28 final size:27
Alignment explanation
Indices: 12029021--12029099 Score: 85
Period size: 28 Copynumber: 3.0 Consensus size: 27
12029011 TCAGTGAAAG
12029021 AAGAAAAAAAATGAAGAAAGAAAAAAA
1 AAGAAAAAAAATGAAGAAAGAAAAAAA
*
12029048 AGAGAAAAAAAATGAAATGAAAG-AAAATA
1 A-AGAAAAAAAATG-AA-GAAAGAAAAAAA
*
12029077 AAG-AATAAAA-GAAGAAA-AAAAAA
1 AAGAAAAAAAATGAAGAAAGAAAAAA
12029100 GAAATGAATG
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
24 8 0.18
25 2 0.04
26 1 0.02
27 7 0.16
28 14 0.31
29 8 0.18
30 5 0.11
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.06
Consensus pattern (27 bp):
AAGAAAAAAAATGAAGAAAGAAAAAAA
Found at i:12030520 original size:79 final size:79
Alignment explanation
Indices: 12030419--12030578 Score: 198
Period size: 78 Copynumber: 2.0 Consensus size: 79
12030409 TTTGTACTTT
* * * * *
12030419 CATTCACATTTACATAAAAAAAAGGGACATTTGCATTTGCATTGCTTGTATCTGCATCACAAGAA
1 CATTCAAATCTACATAAAAAAAA-AGACATTGGCATTTGCATTGCTTGCATCTGCATCACAA-AA
12030484 AA-A-ATTGGCATTTG
64 AAGACATTGGCATTTG
* * * *
12030498 CATTCAAATCTACATCATAAAAAAGACATTGGTATTTGCATTGCTTGCATTTGCATCACAAAAAA
1 CATTCAAATCTACATAAAAAAAAAGACATTGGCATTTGCATTGCTTGCATCTGCATCACAAAAAA
*
12030563 GACATTTGCATTTG
66 GACATTGGCATTTG
12030577 CA
1 CA
12030579 ATTGTATATG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
77 4 0.06
78 34 0.49
79 31 0.45
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (79 bp):
CATTCAAATCTACATAAAAAAAAAGACATTGGCATTTGCATTGCTTGCATCTGCATCACAAAAAA
GACATTGGCATTTG
Found at i:12030565 original size:41 final size:41
Alignment explanation
Indices: 12030444--12030578 Score: 145
Period size: 41 Copynumber: 3.4 Consensus size: 41
12030434 AAAAAAAAGG
* *
12030444 GACATTTGCATTTGCATTGCTTGTATCTGCATCACAAGAAAA
1 GACATTGGCATTTGCATTGCTTGAATCTGCATCACAA-AAAA
* * *
12030486 -A-ATTGGCATTTGCATT-C--AAATCTACATCATAAAAAA
1 GACATTGGCATTTGCATTGCTTGAATCTGCATCACAAAAAA
* * *
12030522 GACATTGGTATTTGCATTGCTTGCATTTGCATCACAAAAAA
1 GACATTGGCATTTGCATTGCTTGAATCTGCATCACAAAAAA
*
12030563 GACATTTGCATTTGCA
1 GACATTGGCATTTGCA
12030579 ATTGTATATG
Statistics
Matches: 75, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
36 4 0.05
37 12 0.16
38 14 0.19
39 2 0.03
40 14 0.19
41 29 0.39
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (41 bp):
GACATTGGCATTTGCATTGCTTGAATCTGCATCACAAAAAA
Found at i:12030764 original size:18 final size:18
Alignment explanation
Indices: 12030731--12030789 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
12030721 TGCATCAAGT
12030731 ATTGACATTCTTGCATTCAC
1 ATTGACA-T-TTGCATTCAC
12030751 ATTGACATTTGCATTCAC
1 ATTGACATTTGCATTCAC
* * * *
12030769 ATCGGCACTTGCATTCGC
1 ATTGACATTTGCATTCAC
12030787 ATT
1 ATT
12030790 ATTTGATGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
18 26 0.76
19 1 0.03
20 7 0.21
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (18 bp):
ATTGACATTTGCATTCAC
Found at i:12031127 original size:33 final size:33
Alignment explanation
Indices: 12031010--12031224 Score: 148
Period size: 33 Copynumber: 6.5 Consensus size: 33
12031000 AAGATAAGAC
* * * *
12031010 TTAAGCCTAGATTAGTTGACCTCCAATAAAATA
1 TTAAGCCCAGATTAGCTGACCCCCAATGAAATA
* * *** * *
12031043 TTAAGCCTAGATTAGCTGGCCTTTAAAGAAAGA
1 TTAAGCCCAGATTAGCTGACCCCCAATGAAATA
* * *
12031076 TTTAATCCCAAATTAGCTGACCCCCATTGAAATA
1 -TTAAGCCCAGATTAGCTGACCCCCAATGAAATA
* * ** * *
12031110 TTAAGCCCATATTAGCTGGCCTTCAAAGAAAGAA
1 TTAAGCCCAGATTAGCTGACCCCCAATGAAA-TA
** * *
12031144 TTAAGCTTAGATTAGCT-AGCCTCTAATG-AAT-
1 TTAAGCCCAGATTAGCTGA-CCCCCAATGAAATA
* *
12031175 GTAAGCCCAGATTAGCTGGCCCCCAATGAAATA
1 TTAAGCCCAGATTAGCTGACCCCCAATGAAATA
12031208 TTAAGCCCAGATTAGCT
1 TTAAGCCCAGATTAGCT
12031225 AGCCTTTAAA
Statistics
Matches: 136, Mismatches: 40, Indels: 12
0.72 0.21 0.06
Matches are distributed among these distances:
31 21 0.15
32 3 0.02
33 68 0.50
34 44 0.32
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (33 bp):
TTAAGCCCAGATTAGCTGACCCCCAATGAAATA
Found at i:12031158 original size:34 final size:34
Alignment explanation
Indices: 12031042--12031453 Score: 174
Period size: 33 Copynumber: 12.5 Consensus size: 34
12031032 CCAATAAAAT
* *
12031042 ATTAAGCCTAGATTAGCTGGCCTTTAAAGAAAGA
1 ATTAAGCCCAGATTAGCTGGCCTTCAAAGAAAGA
* * * * ** ** *
12031076 TTTAATCCCAAATTAGCTGACCCCCATTGAAA-T
1 ATTAAGCCCAGATTAGCTGGCCTTCAAAGAAAGA
*
12031109 ATTAAGCCCATATTAGCTGGCCTTCAAAGAAAGA
1 ATTAAGCCCAGATTAGCTGGCCTTCAAAGAAAGA
** * * *
12031143 ATTAAGCTTAGATTAGCTAGCC-TC---TAATGA
1 ATTAAGCCCAGATTAGCTGGCCTTCAAAGAAAGA
** * *
12031173 ATGTAAGCCCAGATTAGCTGGCCCCCAATGAAA-T
1 AT-TAAGCCCAGATTAGCTGGCCTTCAAAGAAAGA
* * * *
12031207 ATTAAGCCCAGATTAGCTAGCCTTTAAAAAAAAAA
1 ATTAAGCCCAGATTAGCTGGCC-TTCAAAGAAAGA
* * * * *
12031242 ATTAAGTCTAGATTACCTGGCC-TC---TAATGA
1 ATTAAGCCCAGATTAGCTGGCCTTCAAAGAAAGA
* * * * *
12031272 ATGTAAGCCCAG-TTAAGTTAGCCTTCGATGAAA-T
1 AT-TAAGCCCAGATT-AGCTGGCCTTCAAAGAAAGA
* * * * * *
12031306 ATTAAACCTAGATTAGTTGGCCCTCAATGAAA-T
1 ATTAAGCCCAGATTAGCTGGCCTTCAAAGAAAGA
* *
12031339 ATTAAGCCCAGATTAGCTGACCTTTAAAGAAAGA
1 ATTAAGCCCAGATTAGCTGGCCTTCAAAGAAAGA
* * * *
12031373 TTTAAGCCTAGATTAGCTGG-CTTC-CA-ATA-A
1 ATTAAGCCCAGATTAGCTGGCCTTCAAAGAAAGA
* * ** *
12031403 ATGTAAGTCCAGTTTAGCCAGCCTTTAAAGAAAGA
1 AT-TAAGCCCAGATTAGCTGGCCTTCAAAGAAAGA
* *
12031438 TTTAAGCCTAGATTAG
1 ATTAAGCCCAGATTAG
12031454 GTGGTCCCCT
Statistics
Matches: 269, Mismatches: 88, Indels: 42
0.67 0.22 0.11
Matches are distributed among these distances:
30 15 0.06
31 44 0.16
32 7 0.03
33 98 0.36
34 81 0.30
35 24 0.09
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (34 bp):
ATTAAGCCCAGATTAGCTGGCCTTCAAAGAAAGA
Found at i:12031158 original size:67 final size:67
Alignment explanation
Indices: 12031000--12031224 Score: 206
Period size: 67 Copynumber: 3.4 Consensus size: 67
12030990 GATTTAATAC
* * * *
12031000 AAGATAAGACTTAAGCCTAGATTAGTTGACCTCCAATAAAATATTAAGCCTAGATTAGCTGGCCT
1 AAGA-AAGAATTAAGCCTAGATTAGCTGACCCCCAATAAAATATTAAGCCCAGATTAGCTGGCCT
*
12031065 TTA
65 TCA
* * * * * * *
12031068 AAGAAAGATTTAATCCCAAATTAGCTGACCCCCATTGAAATATTAAGCCCATATTAGCTGGCCTT
1 AAGAAAGAATTAAGCCTAGATTAGCTGACCCCCAATAAAATATTAAGCCCAGATTAGCTGGCCTT
12031133 CA
66 CA
* * * * * *
12031135 AAGAAAGAATTAAGCTTAGATTAGCT-AGCCTCTAAT-GAAT-GTAAGCCCAGATTAGCTGGCCC
1 AAGAAAGAATTAAGCCTAGATTAGCTGA-CCCCCAATAAAATATTAAGCCCAGATTAGCTGGCCT
*
12031197 CCA
65 TCA
* * *
12031200 ATGAAA-TATTAAGCCCAGATTAGCT
1 AAGAAAGAATTAAGCCTAGATTAGCT
12031225 AGCCTTTAAA
Statistics
Matches: 128, Mismatches: 28, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
64 16 0.12
65 26 0.20
66 4 0.03
67 78 0.61
68 4 0.03
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (67 bp):
AAGAAAGAATTAAGCCTAGATTAGCTGACCCCCAATAAAATATTAAGCCCAGATTAGCTGGCCTT
CA
Found at i:12031303 original size:99 final size:98
Alignment explanation
Indices: 12031082--12031321 Score: 279
Period size: 99 Copynumber: 2.4 Consensus size: 98
12031072 AAGATTTAAT
* * * * * * *
12031082 CCCAAATTAGCT-GACCCCCATTGAAATATTAAGCCCATATTAGCTGGCCTTCAAAGAAAGAATT
1 CCCAGATTAGCTAG-CCCCCAATGAAATATTAAGCCCAGATTAGCTAGCCTTAAAAAAAAAAATT
*
12031146 AAGCTTAGATTAGCTAGCCTCTAATGAATGTAAG
65 AAGCTTAGATTACCTAGCCTCTAATGAATGTAAG
*
12031180 CCCAGATTAGCTGGCCCCCAATGAAATATTAAGCCCAGATTAGCTAGCCTTTAAAAAAAAAAATT
1 CCCAGATTAGCTAGCCCCCAATGAAATATTAAGCCCAGATTAGCTAGCC-TTAAAAAAAAAAATT
*
12031245 AAG-TCTAGATTACCTGGCCTCTAATGAATGTAAG
65 AAGCT-TAGATTACCTAGCCTCTAATGAATGTAAG
* ** * * *
12031279 CCCAG-TTAAGTTAGCCTTCGATGAAATATTAAACCTAGATTAG
1 CCCAGATT-AGCTAGCCCCCAATGAAATATTAAGCCCAGATTAG
12031322 TTGGCCCTCA
Statistics
Matches: 122, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
98 46 0.38
99 76 0.62
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (98 bp):
CCCAGATTAGCTAGCCCCCAATGAAATATTAAGCCCAGATTAGCTAGCCTTAAAAAAAAAAATTA
AGCTTAGATTACCTAGCCTCTAATGAATGTAAG
Found at i:12031319 original size:132 final size:132
Alignment explanation
Indices: 12031183--12031481 Score: 368
Period size: 132 Copynumber: 2.3 Consensus size: 132
12031173 ATGTAAGCCC
12031183 AGATTAGCTGGCCCCCAATGAAATATTAAGCCCAGATTAGCT-AGCCTTTAAAAAAAAAAATTAA
1 AGATTAGCTGGCCCCCAATGAAATATTAAGCCCAGATTAGCTGA-CCTTT-AAAAAAAAAATTAA
* * * ** * * *
12031247 GTCTAGATTACCTGGCCTCTAATGAATGTAAGCCCAGTTAAGTTAGCCTTCGATGAAATA-TTAA
64 GCCTAGATTACCTGGCCTCCAATAAATGTAAGCCCAGTTAAGCCAGCCTTCAAAGAAAGATTTAA
12031311 ACCT
129 ACCT
* * * * *
12031315 AGATTAGTTGGCCCTCAATGAAATATTAAGCCCAGATTAGCTGACCTTTAAAGAAAGATTTAAGC
1 AGATTAGCTGGCCCCCAATGAAATATTAAGCCCAGATTAGCTGACCTTTAAAAAAAAAATTAAGC
* * * * * *
12031380 CTAGATTAGCTGGCTTCCAATAAATGTAAGTCCAGTTTAGCCAGCCTTTAAAGAAAGATTTAAGC
66 CTAGATTACCTGGCCTCCAATAAATGTAAGCCCAGTTAAGCCAGCCTTCAAAGAAAGATTTAAAC
12031445 CT
131 CT
* *
12031447 AGATTAGGTGGTCCCCTAATGAAATATTAAGCCCA
1 AGATTAGCTGG-CCCCCAATGAAATATTAAGCCCA
12031482 ATGCATCTGC
Statistics
Matches: 142, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
131 58 0.41
132 62 0.44
133 22 0.15
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (132 bp):
AGATTAGCTGGCCCCCAATGAAATATTAAGCCCAGATTAGCTGACCTTTAAAAAAAAAATTAAGC
CTAGATTACCTGGCCTCCAATAAATGTAAGCCCAGTTAAGCCAGCCTTCAAAGAAAGATTTAAAC
CT
Found at i:12031784 original size:18 final size:18
Alignment explanation
Indices: 12031761--12031799 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
12031751 CTTGCATTTG
*
12031761 CATTGATATTTGGATTCA
1 CATTGACATTTGGATTCA
*
12031779 CATTGACATTTGTATTCA
1 CATTGACATTTGGATTCA
12031797 CAT
1 CAT
12031800 CGTTTAATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (18 bp):
CATTGACATTTGGATTCA
Found at i:12032239 original size:104 final size:105
Alignment explanation
Indices: 12032112--12032327 Score: 231
Period size: 104 Copynumber: 2.1 Consensus size: 105
12032102 ACAATTTTTT
* * * ** *
12032112 ACTCATGGTTTAATCTCAATCATTTTTATTTTCTAACTCATAGTTCAATTTTGGTCATCATTATT
1 ACTCATGATTTAATCTCAATCATTTTCATTTTCTAACTCACAGTTCAATTTCAGCCATCATTA-T
* * * * *
12032177 CC-CTGACTCGTGGTTTAATCTAGTTGTTTTT-ATTCTCTA
65 CCTCTAACTCATGATTTAATCTAGATCTTTTTCATTCTCTA
* * * **
12032216 ACTCATGATTTAATC-CTAGTCATTTTCATTTTTTGACTTGCAGTTCAATTTCAGCCATCATTAT
1 ACTCATGATTTAATCTC-AATCATTTTCATTTTCTAACTCACAGTTCAATTTCAGCCATCATTAT
* *
12032280 CCTCTAACTCATGATTTAATCTTGATCTTTTTCATTTTCTA
65 CCTCTAACTCATGATTTAATCTAGATCTTTTTCATTCTCTA
12032321 ACTCATG
1 ACTCATG
12032328 GTTCAATTTT
Statistics
Matches: 91, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
103 4 0.04
104 73 0.80
105 14 0.15
ACGTcount: A:0.23, C:0.20, G:0.09, T:0.48
Consensus pattern (105 bp):
ACTCATGATTTAATCTCAATCATTTTCATTTTCTAACTCACAGTTCAATTTCAGCCATCATTATC
CTCTAACTCATGATTTAATCTAGATCTTTTTCATTCTCTA
Found at i:12032290 original size:70 final size:69
Alignment explanation
Indices: 12032206--12032509 Score: 263
Period size: 70 Copynumber: 4.4 Consensus size: 69
12032196 CTAGTTGTTT
* * * * ** *
12032206 TTATTCTCTAACTCATGATTTAATCCTAGTCATTTTCATTTTTTGACTTGCAGTTCAATTTCAGC
1 TTATCCTCTAACTCATGATTTAAT-CTAGTCGTTTTCATTTTCTAACTTGCAGTTCAATTTTGGT
12032271 CATCA
65 CATCA
* *
12032276 TTATCCTCTAACTCATGATTTAATCTTGATCTTTTTCATTTTCTAAC-T-CATGGTTCAATTTTG
1 TTATCCTCTAACTCATGATTTAATCTAG-TCGTTTTCATTTTCTAACTTGCA--GTTCAATTTTG
12032339 GTCATCA
63 GTCATCA
* * * * * * **
12032346 TTATTCTCTAACTCATGGTTTAATCGAGTCGTTTTTAGTTTT-TGACTCGTGGTTCAATTTTGGT
1 TTATCCTCTAACTCATGATTTAATCTAGTCGTTTTCA-TTTTCTAACTTGCAGTTCAATTTTGGT
**
12032410 CATTT
65 CATCA
* * * ** *
12032415 TTATCCTCTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTAACTTGTGGTTCAATTTTGAT
1 TTATCCTCTAACTCATGATTTAATC-TAGTCGTTTTCATTTTCTAACTTGCAGTTCAATTTTGGT
**
12032480 CATTT
65 CATCA
* * *
12032485 TTATCCTCTGACTCGTGGTTTAATC
1 TTATCCTCTAACTCATGATTTAATC
12032510 CCGATCATAT
Statistics
Matches: 197, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
68 2 0.01
69 57 0.29
70 138 0.70
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.49
Consensus pattern (69 bp):
TTATCCTCTAACTCATGATTTAATCTAGTCGTTTTCATTTTCTAACTTGCAGTTCAATTTTGGTC
ATCA
Found at i:12032322 original size:35 final size:35
Alignment explanation
Indices: 12032282--12032805 Score: 190
Period size: 35 Copynumber: 15.0 Consensus size: 35
12032272 ATCATTATCC
* *
12032282 TCTAACTCATGATTTAATCTTGATC-TTTTTCATTT
1 TCTAACTCATGGTTTAATCTTGGTCATTTTT-ATTT
* * ** *
12032317 TCTAACTCATGGTTCAATTTTGGTCATCATTATTC
1 TCTAACTCATGGTTTAATCTTGGTCATTTTTATTT
*
12032352 TCTAACTCATGGTTTAATC--GAGTCGTTTTTAGTTT
1 TCTAACTCATGGTTTAATCTTG-GTCATTTTTA-TTT
* * * * **
12032387 T-TGACTCGTGGTTCAATTTTGGTCATTTTTATCC
1 TCTAACTCATGGTTTAATCTTGGTCATTTTTATTT
* * *
12032421 TCTGACTCATGGTTTAATCTTGGTCGTTTTCATTT
1 TCTAACTCATGGTTTAATCTTGGTCATTTTTATTT
** * * * **
12032456 TCTAACTTGTGGTTCAATTTTGATCATTTTTATCC
1 TCTAACTCATGGTTTAATCTTGGTCATTTTTATTT
* * ** * *
12032491 TCTGACTCGTGGTTTAATCCCGATCATATTTATTT
1 TCTAACTCATGGTTTAATCTTGGTCATTTTTATTT
* * ** * * * *
12032526 TTTGACTCGCGATTCAATTCCT-ATC-TTTTTATTT
1 TCTAACTCATGGTTTAA-TCTTGGTCATTTTTATTT
* * * * * *
12032560 TTTGACTTATTGTTTAATCTTAGTCATTTTCATTT
1 TCTAACTCATGGTTTAATCTTGGTCATTTTTATTT
* * ** * *
12032595 TCTAACTCA-CGTTTAAT-TCTAGTTGTCTTTATTC
1 TCTAACTCATGGTTTAATCT-TGGTCATTTTTATTT
* * * * *
12032629 TCTGACTCATGGTTTAAT-TCTAGTTAGTTTTATTC
1 TCTAACTCATGGTTTAATCT-TGGTCATTTTTATTT
* * * * ** **
12032664 TCTGACT--TGCAATTTAATTTTGATTGTTTTTATCC
1 TCTAACTCATG--GTTTAATCTTGGTCATTTTTATTT
* * * *
12032699 TCTAACTCGTGGTTTAATCCTGATCGTTTTTATTT
1 TCTAACTCATGGTTTAATCTTGGTCATTTTTATTT
* * ** *
12032734 TCTAACTCATGGATCAAT-TTCAATCATTTTTATTC
1 TCTAACTCATGGTTTAATCTT-GGTCATTTTTATTT
* * * *
12032769 TCTGATTCATGGTTTAATCCTGGTCGTTTTTAGTTT
1 TCTAACTCATGGTTTAATCTTGGTCATTTTTA-TTT
12032805 T
1 T
12032806 TGACTTGTGG
Statistics
Matches: 366, Mismatches: 104, Indels: 37
0.72 0.21 0.07
Matches are distributed among these distances:
33 7 0.02
34 69 0.19
35 276 0.75
36 12 0.03
37 2 0.01
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.51
Consensus pattern (35 bp):
TCTAACTCATGGTTTAATCTTGGTCATTTTTATTT
Found at i:12032401 original size:139 final size:140
Alignment explanation
Indices: 12032205--12032924 Score: 557
Period size: 139 Copynumber: 5.2 Consensus size: 140
12032195 TCTAGTTGTT
* * * * * * *
12032205 TTTATTCTCTAACTCATGATTTAATCCTAGTCATTTTCATTTTTTGACTTGCAGTTCAATTTCAG
1 TTTATTCTCTGACTCATGGTTTAATCCGAGTCGTTTTTAGTTTTTGACTTGCGGTTCAATTTCAG
* ** * * *
12032270 CCATCATTATCCTCTAACTCATGATTTAATCTTGATCTTTTTCATTTTCTAACTCATGGTTCAAT
66 CTATTTTTATCCTCTGACTCATGGTTTAATCTTGATCATTTTCATTTTCTAACTCATGGTTCAAT
*
12032335 TTTGGTCATC
131 TTTAGTCATC
* * * * *
12032345 ATTATTCTCTAACTCATGGTTTAAT-CGAGTCGTTTTTAGTTTTTGACTCGTGGTTCAATTT-TG
1 TTTATTCTCTGACTCATGGTTTAATCCGAGTCGTTTTTAGTTTTTGACTTGCGGTTCAATTTCAG
* * * **
12032408 GTCATTTTTATCCTCTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTAACTTGTGGTTCAA
66 CT-ATTTTTATCCTCTGACTCATGGTTTAATCTTGATCATTTTCATTTTCTAACTCATGGTTCAA
*
12032473 TTTT-GATCATT
130 TTTTAG-TCATC
* * * * * * *
12032484 TTTATCCTCTGACTCGTGGTTTAATCCCGA-TCATATTTATTTTTTGACTCGCGATTCAA-TTC-
1 TTTATTCTCTGACTCATGGTTTAAT-CCGAGTCGTTTTTAGTTTTTGACTTGCGGTTCAATTTCA
** * * * *
12032546 -CTATCTTTTTATTTTTTGACTTATTGTTTAATCTT-AGTCATTTTCATTTTCTAACTCA-CGTT
65 GCTA--TTTTTATCCTCTGACTCATGGTTTAATCTTGA-TCATTTTCATTTTCTAACTCATGGTT
* * **
12032608 TAATTCTAGTTGTC
127 CAATTTTAGTCATC
* * * * ** *
12032622 TTTATTCTCTGACTCATGGTTTAATTCTAGTTAG-TTTTA-TTCTCTGACTTGCAATTTAATTT-
1 TTTATTCTCTGACTCATGGTTTAATCCGAG-TCGTTTTTAGTT-TTTGACTTGCGGTTCAATTTC
* * * * * * * * *
12032684 TGATTGTTTTTATCCTCTAACTCGTGGTTTAATCCTGATCGTTTTTATTTTCTAACTCATGGATC
64 AG-CTATTTTTATCCTCTGACTCATGGTTTAATCTTGATCATTTTCATTTTCTAACTCATGGTTC
* * *
12032749 AATTTCAATCATT
128 AATTTTAGTCATC
* * *
12032762 TTTATTCTCTGATTCATGGTTTAATCCTG-GTCGTTTTTAGTTTTTGACTTGTGGTTCAATTTTG
1 TTTATTCTCTGACTCATGGTTTAATCC-GAGTCGTTTTTAGTTTTTGACTTGCGGTTCAA-TTTC
* * * * ** * *
12032826 ATGATTTTTTTATCCTTTGACTTATGGTTTAATCCCGATCATTTTCATTTTCTAACTCGTGATTC
64 A-GCTATTTTTATCCTCTGACTCATGGTTTAATCTTGATCATTTTCATTTTCTAACTCATGGTTC
* *
12032891 AATTCTAGTCGTC
128 AATTTTAGTCATC
* *
12032904 ATTATTCTCTGACTCGTGGTT
1 TTTATTCTCTGACTCATGGTT
12032925 GAAGAAGTGA
Statistics
Matches: 448, Mismatches: 108, Indels: 46
0.74 0.18 0.08
Matches are distributed among these distances:
137 5 0.01
138 53 0.12
139 204 0.46
140 100 0.22
141 9 0.02
142 76 0.17
143 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (140 bp):
TTTATTCTCTGACTCATGGTTTAATCCGAGTCGTTTTTAGTTTTTGACTTGCGGTTCAATTTCAG
CTATTTTTATCCTCTGACTCATGGTTTAATCTTGATCATTTTCATTTTCTAACTCATGGTTCAAT
TTTAGTCATC
Found at i:12032526 original size:70 final size:69
Alignment explanation
Indices: 12032276--12032894 Score: 403
Period size: 70 Copynumber: 8.9 Consensus size: 69
12032266 TCAGCCATCA
* * * * * *
12032276 TTATCCTCTAACTCATGATTTAATCTTGATCTTTTTCATTTTCTAACTCATGGTTCAATTTTGGT
1 TTATCCTCTGACTCATGGTTTAATCCTGATCATTTT-ATTTTCTAACTCGTGGTTCAATTTTGAT
**
12032341 CATCA
65 CATTT
* * * *
12032346 TTATTCTCTAACTCATGGTTTAAT-C-GAGTCGTTTTTAGTTTT-TGACTCGTGGTTCAATTTTG
1 TTATCCTCTGACTCATGGTTTAATCCTGA-TC-ATTTTA-TTTTCTAACTCGTGGTTCAATTTTG
*
12032408 GTCATTT
63 ATCATTT
* * * *
12032415 TTATCCTCTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTAACTTGTGGTTCAATTTTGAT
1 TTATCCTCTGACTCATGGTTTAATCCTGATCATTTT-ATTTTCTAACTCGTGGTTCAATTTTGAT
12032480 CATTT
65 CATTT
* * * * * * *
12032485 TTATCCTCTGACTCGTGGTTTAATCCCGATCATATTTATTTTTTGACTCGCGATTCAATTCCT-A
1 TTATCCTCTGACTCATGGTTTAATCCTGATCAT-TTTATTTTCTAACTCGTGGTTCAATT-TTGA
12032549 TC-TTT
64 TCATTT
** * * * * ** * *
12032554 TTATTTTTTGACTTATTGTTTAAT-CTTAGTCATTTTCATTTTCTAACTC-ACGTTTAATTCT-A
1 TTATCCTCTGACTCATGGTTTAATCCTGA-TCATTTT-ATTTTCTAACTCGTGGTTCAATTTTGA
** *
12032616 GTTGTCT
64 -TCATTT
* * * * * * *** *
12032623 TTATTCTCTGACTCATGGTTTAATTCT-AGTTAGTTTTATTCTCTGACTTGCAATTTAATTTTGA
1 TTATCCTCTGACTCATGGTTTAATCCTGA-TCA-TTTTATTTTCTAACTCGTGGTTCAATTTTGA
**
12032687 TTGTTT
64 TCATTT
* * * * * **
12032693 TTATCCTCTAACTCGTGGTTTAATCCTGATCGTTTTTATTTTCTAACTCATGGATCAATTTCAAT
1 TTATCCTCTGACTCATGGTTTAATCCTGATC-ATTTTATTTTCTAACTCGTGGTTCAATTTTGAT
12032758 CATTT
65 CATTT
* * * * * *
12032763 TTATTCTCTGATTCATGGTTTAATCCTGGTCGTTTTTAGTTTT-TGACTTGTGGTTCAATTTTGA
1 TTATCCTCTGACTCATGGTTTAATCCTGATC-ATTTTA-TTTTCTAACTCGTGGTTCAATTTTGA
*
12032827 TGATTTTT
64 TCA--TTT
* * * *
12032835 TTATCCTTTGACTTATGGTTTAATCCCGATCATTTTCATTTTCTAACTCGTGATTCAATT
1 TTATCCTCTGACTCATGGTTTAATCCTGATCATTTT-ATTTTCTAACTCGTGGTTCAATT
12032895 CTAGTCGTCA
Statistics
Matches: 429, Mismatches: 96, Indels: 46
0.75 0.17 0.08
Matches are distributed among these distances:
67 3 0.01
68 14 0.03
69 126 0.29
70 224 0.52
71 19 0.04
72 43 0.10
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (69 bp):
TTATCCTCTGACTCATGGTTTAATCCTGATCATTTTATTTTCTAACTCGTGGTTCAATTTTGATC
ATTT
Found at i:12032594 original size:278 final size:281
Alignment explanation
Indices: 12032276--12032924 Score: 709
Period size: 278 Copynumber: 2.3 Consensus size: 281
12032266 TCAGCCATCA
* * * * * * *
12032276 TTATCCTCTAACTCATGATTTAATCTTGATCTTTTTCATTTTCTAACTCATGGTTCAATTTTGGT
1 TTATCCTTTGACTTATGGTTTAATCTTGATCATTTTCATTTTCTAACTCATGGTTCAATTCTAGT
* * * * ***
12032341 CATCATTATTCTCTAACTCATGGTTTAA-TCGAG-TCGTTTTTAGTT-TTTGACTCGTGGTTCAA
66 CGTCATTATTCTCTGACTCATGGTTTAATTCGAGTTAG-TTTTA-TTCTCTGACTCGCAATTCAA
* * * * **
12032403 TTTTGGTCATTTTTATCCTCTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTAACTTGTGG
129 TTTTGATCATTTTTATCCTCTAACTCATGGTTTAATCCTGATCGTTTTCATTTTCTAACTCATGG
* ** * *
12032468 TTCAATTTTGATCATTTTTATCCTCTGACTCGTGGTTTAATCCCGATCATATTTATTTTTTGACT
194 ATCAATTTCAATCATTTTTATCCTCTGACTCATGGTTTAATCCCGATCATATTTAGTTTTTGACT
*
12032533 CGCGATTCAA-TTCCT-ATCTTT
259 CGCGATTCAATTTCATGATCTTT
** * * *
12032554 TTATTTTTTGACTTATTGTTTAATCTT-AGTCATTTTCATTTTCTAACTCA-CGTTTAATTCTAG
1 TTATCCTTTGACTTATGGTTTAATCTTGA-TCATTTTCATTTTCTAACTCATGGTTCAATTCTAG
* * * * *
12032617 TTGTCTTTATTCTCTGACTCATGGTTTAATTCTAGTTAGTTTTATTCTCTGACTTGCAATTTAAT
65 TCGTCATTATTCTCTGACTCATGGTTTAATTCGAGTTAGTTTTATTCTCTGACTCGCAATTCAAT
** * *
12032682 TTTGATTGTTTTTATCCTCTAACTCGTGGTTTAATCCTGATCGTTTTTATTTTCTAACTCATGGA
130 TTTGATCATTTTTATCCTCTAACTCATGGTTTAATCCTGATCGTTTTCATTTTCTAACTCATGGA
* * * * * * *
12032747 TCAATTTCAATCATTTTTATTCTCTGATTCATGGTTTAATCCTGGTCGTTTTTAGTTTTTGACTT
195 TCAATTTCAATCATTTTTATCCTCTGACTCATGGTTTAATCCCGATCATATTTAGTTTTTGACTC
* * * *
12032812 GTGGTTCAATTTTGATGATTTTT
260 GCGATTCAA-TTTCATGATCTTT
** * *
12032835 TTATCCTTTGACTTATGGTTTAATCCCGATCATTTTCATTTTCTAACTCGTGATTCAATTCTAGT
1 TTATCCTTTGACTTATGGTTTAATCTTGATCATTTTCATTTTCTAACTCATGGTTCAATTCTAGT
*
12032900 CGTCATTATTCTCTGACTCGTGGTT
66 CGTCATTATTCTCTGACTCATGGTT
12032925 GAAGAAGTGA
Statistics
Matches: 299, Mismatches: 63, Indels: 14
0.80 0.17 0.04
Matches are distributed among these distances:
277 37 0.12
278 176 0.59
279 2 0.01
280 3 0.01
281 47 0.16
282 34 0.11
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (281 bp):
TTATCCTTTGACTTATGGTTTAATCTTGATCATTTTCATTTTCTAACTCATGGTTCAATTCTAGT
CGTCATTATTCTCTGACTCATGGTTTAATTCGAGTTAGTTTTATTCTCTGACTCGCAATTCAATT
TTGATCATTTTTATCCTCTAACTCATGGTTTAATCCTGATCGTTTTCATTTTCTAACTCATGGAT
CAATTTCAATCATTTTTATCCTCTGACTCATGGTTTAATCCCGATCATATTTAGTTTTTGACTCG
CGATTCAATTTCATGATCTTT
Found at i:12036400 original size:41 final size:41
Alignment explanation
Indices: 12036307--12036490 Score: 169
Period size: 41 Copynumber: 4.5 Consensus size: 41
12036297 CTACTTAGAG
* * ** * *
12036307 GAGCCTTTAATTTTCAAAAAGTTATTGAGCTTCTGCTTAAAT
1 GAGCCTTTAATTTT-TAAAAGTTGTCAAGCCTCTGCTTAAAA
**
12036349 GATTCTTTAATTTTTCAAAAGTTGTCAAG-CTCTGCTTAAAA
1 GAGCCTTTAATTTTT-AAAAGTTGTCAAGCCTCTGCTTAAAA
* *
12036390 GAG-CTGTTAATTTTTAAAAGTTGTCGAGCCTCTACTT-AAA
1 GAGCCT-TTAATTTTTAAAAGTTGTCAAGCCTCTGCTTAAAA
* * *
12036430 GTAGCCTTTAATTTTTTAAAGTTATCAAGCCTTTGCTTAGAAA
1 G-AGCCTTTAATTTTTAAAAGTTGTCAAGCCTCTGCTTA-AAA
*
12036473 -AGCCTTTAATTTTCAAAA
1 GAGCCTTTAATTTTTAAAA
12036491 ATCATGGAGC
Statistics
Matches: 117, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
40 18 0.15
41 72 0.62
42 24 0.21
43 3 0.03
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.40
Consensus pattern (41 bp):
GAGCCTTTAATTTTTAAAAGTTGTCAAGCCTCTGCTTAAAA
Found at i:12036520 original size:82 final size:81
Alignment explanation
Indices: 12036307--12036520 Score: 209
Period size: 82 Copynumber: 2.6 Consensus size: 81
12036297 CTACTTAGAG
* * * **
12036307 GAGCCTTTAATTTTCAAAAAGTTATTGAGCTTCTGCTTAAATGATTCTTTAATTTTTCAAAAGTT
1 GAGCCTTTAATTTTCAAAAA-TTATCGAGCCTCTACTTAAAT-AACCTTTAATTTTTCAAAAGTT
*
12036372 GTCAAGCTCTGCTTAAAA
64 ATCAAGCTCTGCTTAAAA
* * * * *
12036390 GAG-CTGTTAATTTTTAAAAGTTGTCGAGCCTCTACTTAAAGTAGCCTTTAATTTTT-TAAAGTT
1 GAGCCT-TTAATTTTCAAAAATTATCGAGCCTCTACTTAAA-TAACCTTTAATTTTTCAAAAGTT
*
12036453 ATCAAGCCTTTGCTTAGAAA
64 ATCAAG-CTCTGCTTA-AAA
* * *
12036473 -AGCCTTTAATTTTCAAAAATCATGGAGCCTCTATTTAGAATAACCTTT
1 GAGCCTTTAATTTTCAAAAATTATCGAGCCTCTACTTA-AATAACCTTT
12036521 TAAATTTCAG
Statistics
Matches: 107, Mismatches: 18, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
81 11 0.10
82 73 0.68
83 23 0.21
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (81 bp):
GAGCCTTTAATTTTCAAAAATTATCGAGCCTCTACTTAAATAACCTTTAATTTTTCAAAAGTTAT
CAAGCTCTGCTTAAAA
Found at i:12037890 original size:4 final size:4
Alignment explanation
Indices: 12037881--12037952 Score: 50
Period size: 4 Copynumber: 18.8 Consensus size: 4
12037871 GGATACCTTA
*
12037881 AAAT AAAT AAAAT AAA- AAAT AAA- AAATTT AGAAT -AAT GAAT AAAT
1 AAAT AAAT -AAAT AAAT AAAT AAAT AAA--T A-AAT AAAT AAAT AAAT
12037926 -AA- AAAT AAAT -AAT AAA- AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
12037953 ATATGACAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 22
0.71 0.01 0.28
Matches are distributed among these distances:
3 19 0.34
4 29 0.52
5 5 0.09
6 1 0.02
7 2 0.04
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:12037901 original size:7 final size:7
Alignment explanation
Indices: 12037889--12037948 Score: 50
Period size: 7 Copynumber: 8.1 Consensus size: 7
12037879 TAAAATAAAT
12037889 AAAATAA
1 AAAATAA
12037896 AAAATAA
1 AAAATAA
12037903 AAAATTTAGA
1 AAAA--TA-A
*
12037913 ATAATGAA
1 AAAAT-AA
*
12037921 TAAAT-A
1 AAAATAA
12037927 AAAATAA
1 AAAATAA
*
12037934 ATAATAA
1 AAAATAA
12037941 AAAATAA
1 AAAATAA
12037948 A
1 A
12037949 TAAAATATGA
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
6 5 0.12
7 25 0.60
8 5 0.12
9 3 0.07
10 4 0.10
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (7 bp):
AAAATAA
Found at i:12037949 original size:14 final size:15
Alignment explanation
Indices: 12037880--12037951 Score: 51
Period size: 14 Copynumber: 4.7 Consensus size: 15
12037870 AGGATACCTT
12037880 AAAATAAATAAAATA-A
1 AAAATAAAT--AATAGA
*
12037896 AAAATAAAAAATTTAGA
1 AAAATAAATAA--TAGA
* * *
12037913 ATAATGAATAA-ATA
1 AAAATAAATAATAGA
12037927 AAAATAAATAATA-A
1 AAAATAAATAATAGA
12037941 AAAATAAATAA
1 AAAATAAATAA
12037952 AATATGACAA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
14 25 0.56
15 1 0.02
16 10 0.22
17 9 0.20
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (15 bp):
AAAATAAATAATAGA
Found at i:12038178 original size:11 final size:10
Alignment explanation
Indices: 12038135--12038189 Score: 53
Period size: 10 Copynumber: 5.7 Consensus size: 10
12038125 TCATACAAAG
12038135 AAAAT-TTTT
1 AAAATATTTT
*
12038144 AAAATATTCT
1 AAAATATTTT
*
12038154 AAAA-ATGTTG
1 AAAATAT-TTT
12038164 AAAATATTTT
1 AAAATATTTT
12038174 AAAA-ATTTT
1 AAAATATTTT
*
12038183 CAAATAT
1 AAAATAT
12038190 AAAAATAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
9 15 0.41
10 20 0.54
11 2 0.05
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (10 bp):
AAAATATTTT
Found at i:12039260 original size:130 final size:128
Alignment explanation
Indices: 12039024--12040002 Score: 716
Period size: 130 Copynumber: 7.6 Consensus size: 128
12039014 TATGATAACG
* * * ** * *
12039024 ATAATTATGAAAATATCCCTTCTCTTATAATTATTTACTAAATATTACCT-AAAAAAACTATTAA
1 ATAATTACGAAAATA-CCCTTCTCTTATAATTATTTACTAAATAAT-CCTCTATGAAATTACTAA
** *** ** *
12039088 AATGCCCTTTCCATTATATGATATCAAATTGACAAAAGGCCAAATGGTTTATTATGCCCTTATAC
64 AAT-CCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGCCCTTATAC
12039153 C
128 C
* * *
12039154 ATAATTATGAAAATACCTCTTCTCTTATAATTATTTATTAAATAATCCTCTAAGAAATTACTAAA
1 ATAATTACGAAAATACC-CTTCTCTTATAATTATTTACTAAATAATCCTCTATGAAATTACTAAA
* * * * ** *
12039219 ATCCACTTTCTATCATATGACAAGAAATTGACATGTAGCCAAATTAACTACTATG-CCTTAATAT
65 ATCC-CTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGCCCTT-ATAC
12039283 C
128 C
* * * * * * *
12039284 TTAATTAC-AAAAGTACCCTTTGTATTATAATTTTTTTCTACATAATCACT-TATGAAATTACCA
1 ATAATTACGAAAA-TACCC-TTCTCTTATAATTATTTACTAAATAATC-CTCTATGAAATTACTA
* * * ** * *
12039347 AAATACCTTTTTCCATTATATGATAAGAAATTGACATGTGACAAAAACGACAACTATGCCCTCAT
63 AAAT-CC-CTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGCCCTTAT
12039412 ACC
126 ACC
* * * *
12039415 ATAATTACAAAAATACTCCTT-TCTTATAATTATTTACCAAATAATCCCCTATGAAATTAATAAA
1 ATAATTACGAAAATAC-CCTTCTCTTATAATTATTTACTAAATAATCCTCTATGAAATTACT-AA
* * * *
12039479 ATATCCC-TTCCAATATATAATAAGAAATTGACATGTGGCCAAATGGACAAATATG-CCTTCATA
64 A-ATCCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGCCCTT-ATA
12039542 CC
127 CC
* * *
12039544 ATAATTACCAAAATA--CTTATCTTATAATTATTTACTACATAATCC-CTTATGAAATTACTAAA
1 ATAATTACGAAAATACCCTTCTCTTATAATTATTTACTAAATAATCCTC-TATGAAATTACTAAA
** * * * * * * * ** * *
12039606 ATATACTTTCTATTATATGATATGAAGTTAACTTCTGGCTAAATTAACTACTATTCCTTTATACC
65 AT-CCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGCCCTTATACC
* * ** * *
12039671 ATAAATACGCAAATAACTATTCTCTTATAATTATTTACTAAATAATTGCT-TATGAAATTACCAA
1 ATAATTACGAAAAT-ACCCTTCTCTTATAATTATTTACTAAATAA-TCCTCTATGAAATTACTAA
** * * * * * * *
12039735 AATATTCTTTCAATTAGATGATAAAAAAAATTGACATGTGGTCAAATGGACTATTATGCCCTAAA
64 AAT-CCCTTTCCATTATATGAT--AAGAAATTGACATGTGGCCAAATGGACTACTATGCCCTTAT
*
12039800 ATC
126 ACC
* * * *
12039803 ATAATTACAAAAATACCCATTTTCTTATAATTATTTACTAAATAATCCTTTATTAAATTACCT--
1 ATAATTACGAAAATACCC-TTCTCTTATAATTATTTACTAAATAATCCTCTATGAAATTA-CTAA
* * * * * *
12039866 -A-CCCTTTCCATTATATGCTAA-AAAGTTTACATGTGGTCAAATGGATTATTATG-CCTTCAAA
64 AATCCCTTTCCATTATATGATAAGAAA-TTGACATGTGGCCAAATGGACTACTATGCCCTT--AT
12039927 ACC
126 ACC
* * ** *
12039930 TTAATTACGAAAATACTGCTTCTCTTATAATTATTTACTAAATAATTTTCTAAGAAATTA-TCAA
1 ATAATTACGAAAATAC-CCTTCTCTTATAATTATTTACTAAATAATCCTCTATGAAATTACT-AA
*
12039994 AATACCTTT
64 AATCCCTTT
12040003 TTCATTAATA
Statistics
Matches: 671, Mismatches: 139, Indels: 78
0.76 0.16 0.09
Matches are distributed among these distances:
125 9 0.01
126 36 0.05
127 138 0.21
128 21 0.03
129 78 0.12
130 233 0.35
131 71 0.11
132 84 0.13
133 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.37
Consensus pattern (128 bp):
ATAATTACGAAAATACCCTTCTCTTATAATTATTTACTAAATAATCCTCTATGAAATTACTAAAA
TCCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTACTATGCCCTTATACC
Found at i:12040531 original size:129 final size:129
Alignment explanation
Indices: 12040071--12041229 Score: 1021
Period size: 129 Copynumber: 9.0 Consensus size: 129
12040061 TTATTTAAAG
* * * * * * *
12040071 AGAAAGTGACATGCATCCAAATGCACTATTATGCCTTTGTGTCATAATTACAAAAATACCCTTAT
1 AGAAATTGACATGTAGCCAAATGGACTATTATGCCCTTATATCATAATTACAAAAATA-CCTT-T
* * * * * * *
12040136 -TCTTATAACTATTTATTAAATAATCCTCTA-AAAATT-TGCCAAAATGCCTTTTCCATTACATC
64 CTCTTATAATTATTTACTAAATAATCCCCTATAAAATTAT--CAAAATACCATTTCCATTATATG
12040198 ATA
127 ATA
* ** *** * *
12040201 AGAAATTGACATGTGGCCAAATTAACTATTATAAACTTATATCATAATTATAAAAATACCCTTTT
1 AGAAATTGACATGTAGCCAAATGGACTATTATGCCCTTATATCATAATTACAAAAATA-CCTTTC
* * * * *
12040266 TCTTATAATTATTTACCT-AATAATCCCCAATAAAATTAACAAAATATCGTTTCCATTGTATGAT
65 TCTTATAATTATTTA-CTAAATAATCCCCTATAAAATTATCAAAATACCATTTCCATTATATGAT
12040330 A
129 A
* * * * * *
12040331 AG-AA---ACATGTGGCCAAATAGATTATTATGCCCTTATATCATAATTACGAAAATATCGTTCT
1 AGAAATTGACATGTAGCCAAATGGACTATTATGCCCTTATATCATAATTACAAAAATACCTTTCT
* *
12040392 CTTATAATTATTTACTAAATAATCCCCTATTAAATTATCAAAATACCATTTCCATTATAAGATA
66 CTTATAATTATTTACTAAATAATCCCCTATAAAATTATCAAAATACCATTTCCATTATATGATA
* **
12040456 AGAAATTGACATGTAGCCAAATGGACTATTATGCCCTTATA-CTATATTTATGAAAATACCTTTC
1 AGAAATTGACATGTAGCCAAATGGACTATTATGCCCTTATATC-ATAATTACAAAAATACCTTTC
* * * * * *
12040520 TCTTATAATTATTAAGTAAATAATCCCATATGAAATTATCAAAATGCCCTTTCCATTATATGATA
65 TCTTATAATTATTTACTAAATAATCCCCTATAAAATTATCAAAATACCATTTCCATTATATGATA
* * * * * * *
12040585 AGAAATTGACTTATAGCCAAATGGACTATTAAGCCCTCACACCATAATTACGAAAAAAACCTTTT
1 AGAAATTGACATGTAGCCAAATGGACTATTATGCCCTTATATCATAATTAC-AAAAATACC-TTT
* * * *
12040650 CTCTTATAATTATTTACTAAATAATCCCCTAAAAAATTACCAAAAT-GCATTTTCCACTATATGA
64 CTCTTATAATTATTTACTAAATAATCCCCTATAAAATTATCAAAATACCA-TTTCCATTATATGA
12040714 TA
128 TA
* * * * * *
12040716 AAAAATTTAAATGTAGCCAAAAGGACTATTATGGTCC--ATATTATAATTACAAAAATACTCTTT
1 AGAAATTGACATGTAGCCAAATGGACTATTAT-GCCCTTATATCATAATTACAAAAATAC-CTTT
* * * ** * * * *
12040779 CTCTAACAATTATTTGCTAAATGTTCTCCTATGAAATTATGAAAATACCCTTTCCATTATAT-AT
64 CTCTTATAATTATTTACTAAATAATCCCCTATAAAATTATCAAAATACCATTTCCATTATATGAT
*
12040843 T
129 A
* * *
12040844 AGAAATTGACAAGT-GACCAAATAGACTATTATG-CCTTCATATCATAATTGA-AAAAAGACCCT
1 AGAAATTGACATGTAG-CCAAATGGACTATTATGCCCTT-ATATCATAATT-ACAAAAATA-CCT
* * * * * * * *
12040906 TTCTCTAATAATTATTAACTACATAATCCCCTAGAAAATAACCAAAACACCATTTCCATTTTATG
62 TTCTCTTATAATTATTTACTAAATAATCCCCTATAAAATTATCAAAATACCATTTCCATTATATG
12040971 ATA
127 ATA
* * * * ** *
12040974 AGAAATTAACATGT-GATCAAATGGATTATTATGCCCTTATATCAAAATTATGAAAATACCCTTA
1 AGAAATTGACATGTAG-CCAAATGGACTATTATGCCCTTATATCATAATTACAAAAATA-CCTTT
* ** * * * *
12041038 CT-TTAATAATTATTTACTAAACAATCTTCTATGAAATTACCAAAAGA-CACTTTTCATTATATG
64 CTCTT-ATAATTATTTACTAAATAATCCCCTATAAAATTATCAAAATACCA-TTTCCATTATATG
12041101 ATA
127 ATA
* * * * * *
12041104 AGAAATTGACATGTAGCCAAATGGACTAGTACGCCCTCATACCATAATTACAAAAATACCCTTAT
1 AGAAATTGACATGTAGCCAAATGGACTATTATGCCCTTATATCATAATTACAAAAATACCTTTCT
* * *
12041169 CTT-TCAATTATTTACTAAATAATCCCTTATGAAATTA-CACAATACTC-TTTCCATTATATGA
66 CTTAT-AATTATTTACTAAATAATCCCCTATAAAATTATCAAAATAC-CATTTCCATTATATGA
12041230 CTATTATGCC
Statistics
Matches: 831, Mismatches: 165, Indels: 68
0.78 0.16 0.06
Matches are distributed among these distances:
124 2 0.00
125 60 0.07
126 46 0.06
127 2 0.00
128 46 0.06
129 310 0.37
130 267 0.32
131 95 0.11
132 3 0.00
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.35
Consensus pattern (129 bp):
AGAAATTGACATGTAGCCAAATGGACTATTATGCCCTTATATCATAATTACAAAAATACCTTTCT
CTTATAATTATTTACTAAATAATCCCCTATAAAATTATCAAAATACCATTTCCATTATATGATA
Found at i:12041518 original size:129 final size:130
Alignment explanation
Indices: 12041228--12042861 Score: 1141
Period size: 129 Copynumber: 12.7 Consensus size: 130
12041218 TCCATTATAT
* * ** * **
12041228 GACTATTATGCCCTCATGCCATAA--ATGAGAAAT-GCCTCTTCTAATAAAATTATTTAAGAAAT
1 GACTATTATGCCCTCATACCATAATTATGA-AAATAACC-CTTCTCTTATAATTATTTACTAAAT
* ** *
12041290 AAT-TGC-CAATGAAATTACCAAAATGCCATTTTTTATTATATGATAAGAAATTGACATGTAGCC
64 AATCT-CTTAA-GAAATTACCAAAATGCCA-TTTCCATTATATGATAAGAAATTGACATGTGGCC
12041353 AAATG
126 AAATG
* * ** * *
12041358 GTCTACTACACCGTC-TACCATAATTATGAAAATAACCCTTCTCTTACAATTATTTACTAAATAA
1 GACTATTATGCCCTCATACCATAATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAA
* * * * * *
12041422 TCTC-TAAAAAACTACCAAAATGCCATTTCCATTATATAATAAGAAATTGACATGTGGCTAAGTA
66 TCTCTTAAGAAATTACCAAAATGCCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATG
* ** * * *
12041486 GACTACTATGCTTTCAAACCATAATTACGAAAAT-ACCCATTCTCTTATAATTGTTTACTAAATA
1 GACTATTATGCCCTCATACCATAATTATGAAAATAACCC-TTCTCTTATAATTATTTACTAAATA
* * * * * *
12041550 ATCTAC-TAGGAAATTACAAAAATGGC-TTTCCATTATATGATAA-AATTTTACATATGGCCAAA
65 ATCT-CTTAAGAAATTACCAAAATGCCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAA
*
12041612 TT
129 TG
* * * * *
12041614 GACAATTATGCTCTCATATCATAACTATGAAAAT-ACCCATTCTCTTATAATTATTTGCTAAATA
1 GACTATTATGCCCTCATACCATAATTATGAAAATAACCC-TTCTCTTATAATTATTTACTAAATA
* * * * * * * * **
12041678 ATCAGC-TATGAAATTACCAAAATACCCTATCCATTAGCA-GATAAAAAATTGATATGTAACCAA
65 ATC-TCTTAAGAAATTACCAAAATGCCATTTCCATTA-TATGATAAGAAATTGACATGTGGCCAA
12041741 ATG
128 ATG
* * * ** * *
12041744 GAGTATTATCCCCTCATTCCATAATTA--AATGAATATTCCTTTTTTTA-AATTTATTT-CTAAA
1 GACTATTATGCCCTCATACCATAATTATGAA--AATAACCCTTCTCTTATAA-TTATTTACTAAA
* ** * * * * * *
12041805 TAATCCCTTATTAAATTACCAAAATACC-TTTTCAGTCATATGATAATAAGTTGACATATGGCCA
63 TAATCTCTTAAGAAATTACCAAAATGCCATTTCCA-TTATATGATAAGAAATTGACATGTGGCCA
12041869 AATG
127 AATG
* * * * ** *
12041873 AACTATTATGCCCTTAAATCATAATTACAAAAAT-ACCCTTTCTCTTATAATTATTTATTAAATA
1 GACTATTATGCCCTCATACCATAATTATGAAAATAACCC-TTCTCTTATAATTATTTACTAAATA
* * * * * *
12041937 ATC-CTTTAA-AAATTTACCAAAATGCCATTTTCATTATATGATAAAAAATTTATAGGTGCCCAA
65 ATCTC-TTAAGAAA-TTACCAAAATGCCATTTCCATTATATGATAAGAAATTGACATGTGGCCAA
*
12042000 ATT
128 ATG
* * * ** * * * *
12042003 AACTATTATACCCTCATATCATAATTACAAAAAT-ATCCTTTTCATATAATTA---ACAAAATAA
1 GACTATTATGCCCTCATACCATAATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAA
* * * * * * * * * *
12042064 TCTCTTATGAAATTACAAAAATGCCCTTTCCATGAAATAATAAGAAATTAACATATAGCCAAACG
66 TCTCTTAAGAAATTACCAAAATGCCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATG
* * * * * * * *
12042129 GACTAATACGCCATCATACCTTAATTATGAAAATACCCCTTCTTTTTTAGTTATTTACTAAATAA
1 GACTATTATGCCCTCATACCATAATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAA
* * * * * * * * *
12042194 TCTCTTAAAAAATTACAAAAATGCCCTTCCCATTATATGACAA-AAATTTATATGTGACCAAATA
66 TCTCTTAAGAAATTACCAAAATGCCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATG
* * * * *
12042258 GACTATTATGCCCTCATACTATAATTATGAAAATATCACTTCTTTTATAATTATTTACCAAATAA
1 GACTATTATGCCCTCATACCATAATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAA
* * * * * * * *
12042323 TC-CATCAAGAAATTGCCAAACTACGAATTCCATTATATGATAAGAAATTGACATGTGACTAAAT
66 TCTC-TTAAGAAATTACCAAAATGCCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAAT
12042387 G
130 G
* * * *
12042388 GACTATTATGCCATGATACCATAATTATGAAAATATCCATTCTCTTATAATTATTTACTAAATAA
1 GACTATTATGCCCTCATACCATAATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAA
* * * * * * * *
12042453 TCCCTCAA-AAATTACTAAAATGCCCTATCCATTATATAAAAAGAAATTGACATGTGGCCAGATG
66 TCTCTTAAGAAATTACCAAAATGCCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATG
** * * * * *
12042517 GACTATTATGCATTCATACCATAA-T-TGCAAGAAAAACCC-TCTTTTGTAATTGTTTACTTAAT
1 GACTATTATGCCCTCATACCATAATTATG-AA-AATAACCCTTCTCTTATAATTATTTACTAAAT
* * * *
12042579 AATCCCATAAGAAATTACCAAAATGCC-TTCTCCATTTTATGATAA-AAATTTACATGTGGCCAA
64 AATCTCTTAAGAAATTACCAAAATGCCATT-TCCATTATATGATAAGAAATTGACATGTGGCCAA
*
12042642 ATT
128 ATG
* * * * * *
12042645 AACTATTCTGCCTTCATATCATAATTATG-AAATATCCCTTCTCTTATAATTATTTACTACATAA
1 GACTATTATGCCCTCATACCATAATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAA
* * * ** * * *
12042709 TCCCCTATGAAATTAAGAAAATACTC-TTTCCATTACATGATAAAAAAGTTGACATGTGGCCAAA
66 TCTCTTAAGAAATTACCAAAATGC-CATTTCCATTATATGATAAGAAA-TTGACATGTGGCCAAA
*
12042773 AG
129 TG
* ** * ** * * *
12042775 GACTAATATGCTATCATACCATGATTACCAAAAT-TCTCCTT-TACTTATAATTATTTGCTAAAC
1 GACTATTATGCCCTCATACCATAATTATGAAAATAAC-CCTTCT-CTTATAATTATTTACTAAAT
* *
12042838 AATCTC-CAACGAAATTATCAAAAT
64 AATCTCTTAA-GAAATTACCAAAAT
12042862 ACTCTTTTTT
Statistics
Matches: 1185, Mismatches: 270, Indels: 97
0.76 0.17 0.06
Matches are distributed among these distances:
126 75 0.06
127 23 0.02
128 269 0.23
129 402 0.34
130 356 0.30
131 60 0.05
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (130 bp):
GACTATTATGCCCTCATACCATAATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAA
TCTCTTAAGAAATTACCAAAATGCCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATG
Found at i:12041956 original size:259 final size:255
Alignment explanation
Indices: 12041300--12042801 Score: 1089
Period size: 259 Copynumber: 5.8 Consensus size: 255
12041290 AATTGCCAAT
* ** * * ** *
12041300 GAAATTACCAAAATGCCATTTTTTATTATATGATAAGAAATTGACATGTAGCCAAATGGTCTACT
1 GAAATTACCAAAATACC--TTTCCATTATATGATAA-AAATTGACATATGGCCAAATGAACTATT
** * * *
12041365 ACACCGTC-TACCATAATTATGAAAATAACCC-TTCTCTTACAATTATTTACTAAATAAT-CTCT
63 ATGCCCTCATATCATAATTATGAAAAT-ACCCATTCTCTTATAATTATTTACTAAATAATCCT-T
* * * * * * * * * * * *
12041427 AAAAAACTACCAAAATGCCATTTCCATTATATAATAAGAAATTGACATGTGGCTAAGTAGACTAC
126 TAAAAATTACCAAAATGCCCTATCCATTATATGATAAAAAATTGATATGTGACCAAATGGACTAT
** * * * * * * *
12041492 TATGCTTTCAAACCATAATT-ACGAAAATACCCATTCTCTTATAATTGTTTACTAAATAATCTAC
191 TATGCCCTCATACCATAATTAAAGAAAAT-TCC-TTTTTTTATAATT-ATTACTAAATAATC-CC
*
12041556 -TAG
252 TTAA
* ** * * *
12041559 GAAATTACAAAAATGGCTTTCCATTATATGATAAAATTTTACATATGGCCAAATTG-ACAATTAT
1 GAAATTACCAAAATACCTTTCCATTATATGATAAAAATTGACATATGGCCAAA-TGAACTATTAT
* * * *
12041623 GCTCTCATATCATAACTATGAAAATACCCATTCTCTTATAATTATTTGCTAAATAATCAGCTAT-
65 GCCCTCATATCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATC--CTTTA
* * * * *
12041687 GAAATTACCAAAATACCCTATCCATTAGCA-GATAAAAAATTGATATGTAACCAAATGGAGTATT
128 AAAATTACCAAAATGCCCTATCCATTA-TATGATAAAAAATTGATATGTGACCAAATGGACTATT
* * * *
12041751 ATCCCCTCATTCCATAATTAAATGAATATTCCTTTTTTTA-AATTTATTTCTAAATAATCCCTTA
192 ATGCCCTCATACCATAATTAAA-GAAAATTCCTTTTTTTATAA-TTATTACTAAATAATCCCTTA
*
12041815 T
255 A
* * * *
12041816 TAAATTACCAAAATACCTTTTCAGTCATATGATAATAAGTTGACATATGGCCAAATGAACTATTA
1 GAAATTACCAAAATACCTTTCCA-TTATATGATAA-AAATTGACATATGGCCAAATGAACTATTA
* * ** * *
12041881 TGCCCTTAAATCATAATTACAAAAATACCCTTTCTCTTATAATTATTTATTAAATAATCCTTTAA
64 TGCCCTCATATCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCTTTAA
* * * * * * **
12041946 AAATTTACCAAAATGCCATTTTCATTATATGATAAAAAATTTATAGGTGCCCAAATTAACTATTA
129 AAA-TTACCAAAATGCCCTATCCATTATATGATAAAAAATTGATATGTGACCAAATGGACTATTA
* * * ** * * *
12042011 TACCCTCATATCATAATTACA-AAAATATCCTTTTCATATAATTA--ACAAAATAATCTCTTAT
193 TGCCCTCATACCATAATTAAAGAAAAT-TCCTTTTTTTATAATTATTACTAAATAATCCCTTAA
* * * * * * * * * *
12042072 GAAATTACAAAAATGCCCTTTCCATGAAATAATAAGAAATTAACATATAGCCAAACGGACTAATA
1 GAAATTACCAAAAT-ACCTTTCCATTATATGATAA-AAATTGACATATGGCCAAATGAACTATTA
* * * * * * * * *
12042137 CGCCATCATACCTTAATTATGAAAATACCCCTTCTTTTTTAGTTATTTACTAAATAATCTCTTAA
64 TGCCCTCATATCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATC-CTTTA
* * * *
12042202 AAAATTACAAAAATGCCCT-TCCCATTATATGA-CAAAAATTTATATGTGACCAAATAGACTATT
128 AAAATTACCAAAATGCCCTAT-CCATTATATGATAAAAAATTGATATGTGACCAAATGGACTATT
* * * * * *
12042265 ATGCCCTCATACTATAATT-ATGAAAATATCACTTCTTTTATAATTATTTACCAAATAATCCATC
192 ATGCCCTCATACCATAATTAAAGAAAAT-TC-CTTTTTTTATAATTA-TTACTAAATAATCCCTT
12042329 AA
254 AA
* * ** * * * *
12042331 GAAATTGCCAAACTACGAATTCCATTATATGATAAGAAATTGACATGTGACTAAATGGACTATTA
1 GAAATTACCAAAATAC-CTTTCCATTATATGATAA-AAATTGACATATGGCCAAATGAACTATTA
* * * * * *
12042396 TGCCATGATACCATAATTATGAAAATATCCATTCTCTTATAATTATTTACTAAATAATCCCTCAA
64 TGCCCTCATATCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCTTTAA
* * * * *
12042461 AAATTACTAAAATGCCCTATCCATTATAT-AAAAAGAAATTGACATGTGGCCAGATGGACTATTA
129 AAATTACCAAAATGCCCTATCCATTATATGATAAA-AAATTGATATGTGACCAAATGGACTATTA
** * * * * * * * *
12042525 TGCATTCATACCATAATTGCAAGAAAA-ACCCTCTTTTGTAATTGTTTACTTAATAATCCCATAA
193 TGCCCTCATACCATAATT-AAAGAAAATTCCTTTTTTTATAATT-ATTACTAAATAATCCCTTAA
* * * * * *
12042589 GAAATTACCAAAATGCCTTCTCCATTTTATGATAAAAATTTACATGTGGCCAAATTAACTATTCT
1 GAAATTACCAAAATACCTT-TCCATTATATGATAAAAATTGACATATGGCCAAATGAACTATTAT
* * **
12042654 GCCTTCATATCATAATTATG-AAATATCCC-TTCTCTTATAATTATTTACTACATAATCCCCTAT
65 GCCCTCATATCATAATTATGAAAATA-CCCATTCTCTTATAATTATTTACTAAATAATCCTTTA-
* ** * * * * * * * *
12042717 GAAATTAAGAAAATACTCTTTCCATTACATGATAAAAAAGTTGACATGTGGCCAAAAGGACTAAT
128 AAAATTACCAAAATGCCCTATCCATTATATGATAAAAAA-TTGATATGTGACCAAATGGACTATT
** *
12042782 ATGCTATCATACCATGATTA
192 ATGCCCTCATACCATAATTA
12042802 CCAAAATTCT
Statistics
Matches: 982, Mismatches: 222, Indels: 80
0.76 0.17 0.06
Matches are distributed among these distances:
255 51 0.05
256 200 0.20
257 185 0.19
258 224 0.23
259 309 0.31
260 7 0.01
261 6 0.01
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (255 bp):
GAAATTACCAAAATACCTTTCCATTATATGATAAAAATTGACATATGGCCAAATGAACTATTATG
CCCTCATATCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCTTTAAAA
ATTACCAAAATGCCCTATCCATTATATGATAAAAAATTGATATGTGACCAAATGGACTATTATGC
CCTCATACCATAATTAAAGAAAATTCCTTTTTTTATAATTATTACTAAATAATCCCTTAA
Found at i:12042686 original size:515 final size:509
Alignment explanation
Indices: 12041324--12042765 Score: 1320
Period size: 515 Copynumber: 2.8 Consensus size: 509
12041314 GCCATTTTTT
* * ** * *
12041324 ATTATATGATAAGAAATTGACATGT-AGCCAAATGGTCTACTACACCGTCTACCATAATTATGAA
1 ATTATATGATAAGAAATTGACATGTGA-CCAAATGGACTATTATGCCATATACCATAATTATGAA
* * * *
12041388 AATAACCCTTCTCTTACAATTATTTACTAAATAATCTCTAAAAAACTACCAAAATGCCATTTCCA
65 AATAACCATTCTCTTATAATTATTTACTAAATAATCCCTAAAAAATTACCAAAATGCCATTTCCA
* * * * * *
12041453 TTATATAATAAGAAATTGACATGTGGCTAAGTAGACTACTATGCTTTCAAACCATAATT-ACGAA
130 TTATATAAAAAGAAATTGACATGTGGCCAA-TAGACTATTATGCATTCATACCATAATTCAAGAA
* * * *
12041517 AATACCCATTCTCTTATAATTGTTTACTAAATAAT-CTACTAGGAAATTACAAAAATGGCTTTCC
194 AA-ACCC--TCTTTTATAATTGTTTACTAAATAATCCCA-TAAGAAATTACAAAAATGCCTTTCC
* * * *
12041581 ATTATATGATAAAATTTTACATATGGCCAAATTGACAATTATG-CTCTCATATCATAACTATGAA
255 ATTATATGATAAAAATTTACATATGGCCAAATTGACTATTCTGCCT-TCATATCATAATTATGAA
* ** *
12041645 A-ATACCCATTCTCTTATAATTATTTGCTAAATAATCAGCTATGAAATTACCAAAATACCCTATC
319 ATAT-CCC-TTCTCTTATAATTATTTACTAAATAATCAGCTAAAAAATTACAAAAATACCCTATC
* * *
12041709 CATTAGCAGATAAAAAATTGATATGTAACCAAATGGAGTATTATCCCCTCATTCCATAATTAAAT
382 CATTAGCAGATAAAAAATTGATATGTAACCAAATAGACTATTATCCCCTCATACCATAATT-AAT
* * * * * ** ** *
12041774 GAATATTCCTTTTTTTAAATTTATTTCTAAATAATCCCTTATTAAATTACCAAAATACCTTTTC
446 GAAAATTCCTTCTTTTAAATTTATTTCCAAATAATCCATCAAGAAATTACCAAAATACAATTCC
* * * * * * * * * **
12041838 AGTCATATGATAATAAGTTGACATATGGCCAAATGAACTATTATGCCCTTAAATCATAATTACAA
1 A-TTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATG-CCATATACCATAATTATGA
* * * * * *
12041903 AAATACCCTTTCTCTTATAATTATTTATTAAATAATCCTTTAAAAATTTACCAAAATGCCATTTT
64 AAATAACCATTCTCTTATAATTATTTACTAAATAATCC-CTAAAAAATTACCAAAATGCCATTTC
* * * * * * ** *
12041968 CATTATATGATAAA-AAATTTATAGGTGCCCAAATTA-ACTATTATACCCTCATATCATAATTAC
128 CATTATAT-AAAAAGAAATTGACATGTGGCC-AA-TAGACTATTATGCATTCATACCATAATT-C
* * * ** * * * * *
12042031 AA-AAATATCCT-TTTCAT-ATAATTAACAAAATAATCTCTTATGAAATTACAAAAATGCCCTTT
189 AAGAAAAACCCTCTTTTATAATTGTTTACTAAATAATCCCATAAGAAATTACAAAAATG-CCTTT
* * * * * ** * * * *
12042093 CCATGAAATAATAAGAAATTAACATATAGCCAAACGGACTAATAC-GCCATCATACCTTAATTAT
253 CCATTATATGATAA-AAATTTACATATGGCCAAATTGACT-ATTCTGCCTTCATATCATAATTAT
* * * * * *
12042157 GAAAATACCCCTTCTTTTTTAGTTATTTACTAAATAATC-TCTTAAAAAATTACAAAAATGCCCT
316 G-AAATATCCCTTCTCTTATAATTATTTACTAAATAATCAGC-TAAAAAATTACAAAAATACCCT
* * * * * *
12042221 -TCCCATTA-TATGA-CAAAAATTTATATGTGACCAAATAGACTATTATGCCCTCATACTATAAT
379 AT-CCATTAGCA-GATAAAAAATTGATATGTAACCAAATAGACTATTATCCCCTCATACCATAAT
* *
12042283 T-ATGAAAATATCACTTCTTTTATAA-TTATTTACCAAATAATCCATCAAGAAATTGCCAAACTA
442 TAATGAAAAT-TC-CTTCTTTTA-AATTTATTT-CCAAATAATCCATCAAGAAATTACCAAAATA
12042346 CGAATTCC
503 C-AATTCC
*
12042354 ATTATATGATAAGAAATTGACATGTGACTAAATGGACTATTATGCCATGATACCATAATTATGAA
1 ATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCCAT-ATACCATAATTATGAA
* * * * *
12042419 AATATCCATTCTCTTATAATTATTTACTAAATAATCCCTCAAAAATTACTAAAATGCCCTATCCA
65 AATAACCATTCTCTTATAATTATTTACTAAATAATCCCTAAAAAATTACCAAAATGCCATTTCCA
*
12042484 TTATATAAAAAGAAATTGACATGTGGCCAGATGGACTATTATGCATTCATACCATAATTGCAAGA
130 TTATATAAAAAGAAATTGACATGTGGCCA-ATAGACTATTATGCATTCATACCATAATT-CAAGA
* * *
12042549 AAAACCCTCTTTTGTAATTGTTTACTTAATAATCCCATAAGAAATTACCAAAATGCCTTCTCCAT
193 AAAACCCTCTTTTATAATTGTTTACTAAATAATCCCATAAGAAATTACAAAAATGCCTT-TCCAT
* * *
12042614 TTTATGATAAAAATTTACATGTGGCCAAATTAACTATTCTGCCTTCATATCATAATTATGAAATA
257 TATATGATAAAAATTTACATATGGCCAAATTGACTATTCTGCCTTCATATCATAATTATGAAATA
* ** ** * *
12042679 TCCCTTCTCTTATAATTATTTACTACATAATCCCCTATGAAATTA-AGAAAATACTCTTTCCATT
322 TCCCTTCTCTTATAATTATTTACTAAATAATCAGCTAAAAAATTACA-AAAATACCCTATCCATT
*
12042743 A-CATGATAAAAAAGTTGACATGT
386 AGCA-GATAAAAAA-TTGATATGT
12042766 GGCCAAAAGG
Statistics
Matches: 718, Mismatches: 173, Indels: 71
0.75 0.18 0.07
Matches are distributed among these distances:
512 7 0.01
513 38 0.05
514 147 0.20
515 293 0.41
516 110 0.15
517 112 0.16
518 10 0.01
519 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.35
Consensus pattern (509 bp):
ATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCCATATACCATAATTATGAAA
ATAACCATTCTCTTATAATTATTTACTAAATAATCCCTAAAAAATTACCAAAATGCCATTTCCAT
TATATAAAAAGAAATTGACATGTGGCCAATAGACTATTATGCATTCATACCATAATTCAAGAAAA
ACCCTCTTTTATAATTGTTTACTAAATAATCCCATAAGAAATTACAAAAATGCCTTTCCATTATA
TGATAAAAATTTACATATGGCCAAATTGACTATTCTGCCTTCATATCATAATTATGAAATATCCC
TTCTCTTATAATTATTTACTAAATAATCAGCTAAAAAATTACAAAAATACCCTATCCATTAGCAG
ATAAAAAATTGATATGTAACCAAATAGACTATTATCCCCTCATACCATAATTAATGAAAATTCCT
TCTTTTAAATTTATTTCCAAATAATCCATCAAGAAATTACCAAAATACAATTCC
Found at i:12044123 original size:129 final size:130
Alignment explanation
Indices: 12042892--12044356 Score: 1106
Period size: 130 Copynumber: 11.3 Consensus size: 130
12042882 ACATTAAAAG
* * * * * * *
12042892 AATCCCTTACGAAATTA-CAAAAT--GCTTATCCCATTATTTGATGAGAAAG-CGACATGTGTCT
1 AATCCCTTATGAAATTACCAAAATACCCTT-T-CCATTATATGAT-AAAAAGTTGACATGTGGCC
* * *
12042953 AAATGTACTATTATGCC--CATGTACCATAATTATGAAAAATACCCATTCTCTTATAATTATTTA
63 AAATGGACTATTATGCCTTCA--TAACATAATTATG-AAAATACCCATTTTCTTATAATTATTTA
12043016 CTAAAT
125 CTAAAT
* * * * * * * * *
12043022 AATCCC--ATAAAATTACTAAAATGGCCC-TTCCATTATGTGAGAAGAATTTGATATGTGGTCAA
1 AATCCCTTATGAAATTACCAAAAT-ACCCTTTCCATTATATGATAAAAAGTTGACATGTGGCCAA
* * ** * * * * *
12043084 ATTGAGTATTAT-AATCTCGTATCATAATTATGAAAACATCCATTTTCTTATAATTATTTAATAA
65 ATGGACTATTATGCCT-TCATAACATAATTATGAAAATACCCATTTTCTTATAATTATTTACTAA
12043148 AT
129 AT
* * * * * *
12043150 AATCCCTTATTACATTAACAAAATGCCATTTCCATTATATGATAAAAAATTGACATGTGGCCAAA
1 AATCCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAAAAGTTGACATGTGGCCAAA
* * * * * * *
12043215 TGGACTCTTATTCTCTT-ATACCATAATTAAGAAAATA-CCATTTTGTAACAATTA-TTACTAAA
66 TGGACTATTATGC-CTTCATAACATAATTATGAAAATACCCATTTTCTTATAATTATTTACTAAA
12043277 T
130 T
* * * * * * *
12043278 AATCCCTTATTAAATCACAAAAATACCCTTTCCATTATATAATAAAAAGATAATATGTGGCCAAA
1 AATCCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAAAAGTTGACATGTGGCCAAA
*** * * * *
12043343 TGGACTATTATTATTTCAT-ACACAATTATGAAAATACAC-TTCTT-TTTTAATTGTTTACTAAA
66 TGGACTATTATGCCTTCATAACATAATTATGAAAATACCCATT-TTCTTATAATTATTTACTAAA
12043405 T
130 T
* * * * * *
12043406 AATCCCCTATGAAATTATCAAAATGCCCTTTTTCATTATATGATAAGAAGTTGACATGTTGCCAA
1 AATCCCTTATGAAATTACCAAAATACCC-TTTCCATTATATGATAAAAAGTTGACATGTGGCCAA
* * * * ** * *
12043471 ATGGATTATTATACTTTCATAGCATAATTACAAAAATACCCATTCTCTTATTATTATTTACTAAA
65 ATGGACTATTATGCCTTCATAACATAATTATGAAAATACCCATTTTCTTATAATTATTTACTAAA
12043536 T
130 T
* * * * * * * *
12043537 AATCTCTTATGAAATAACCAAAATGCCATTTCCAATATGTAATAAGAAA-TTGACATGTGACCAA
1 AATCCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAA-AAAGTTGACATGTGGCCAA
* * * * *
12043601 ATGGACTATTATGCCCTGATACCATAACTATGAAAATATCCC-TTCTT-TTATAATCATTTAC-A
65 ATGGACTATTATGCCTTCATAACATAATTATGAAAATA-CCCATT-TTCTTATAATTATTTACTA
12043663 GAAT
128 -AAT
* * * * * * * *
12043667 AATCCCTCATAAAATTACTAAAATGCCCTTTTCATTATATGAAAAAAAATTGACATGTGGCTAAA
1 AATCCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAAAAGTTGACATGTGGCCAAA
* * * ** *
12043732 TGAACTATTATGCCTTTATACCATAATTATGAAAATACTCC-TGCTCTTATAATTACTTACTAAA
66 TGGACTATTATGCCTTCATAACATAATTATGAAAATAC-CCATTTTCTTATAATTATTTACTAAA
12043796 T
130 T
* * * * * * *
12043797 AATCCCTTAGGAAATTATCAAAATGCCCTTTCCATTATATTATAAGAATTTTACATGTGGCCAAA
1 AATCCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAAAAGTTGACATGTGGCCAAA
* * * * * *** ** *
12043862 TTGACTAATATGCCCTCATATCCTAATTGCAAAAATATCCC-TTCCCTTATAATTATTTGCTAAA
66 TGGACTATTATGCCTTCATAACATAATTATGAAAATA-CCCATTTTCTTATAATTATTTACTAAA
12043926 T
130 T
*** ** ** * *
12043927 AATTTATTATGAAATTATAAAAATACCCTTTCCATTGCATGATAAGAAA--TGAACTTGTGCCCA
1 AATCCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAA-AAAGTTG-ACATGTGGCCA
* * * *
12043990 AATGGACTAGTATTCCTTCACAATATAATTATGAAAATACCCATTTTCTTATAATTA-TTACTAA
64 AATGGACTATTATGCCTTCATAACATAATTATGAAAATACCCATTTTCTTATAATTATTTACTAA
12044054 AT
129 AT
* * * * * * * *
12044056 AATCTCTTATTAAATTACCACAATACCTTTTCCATTATATGACAAAAAGTTGAAATTTGGCCGAA
1 AATCCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAAAAGTTGACATGTGGCCAAA
* * ** *
12044121 TGGACTATTATGCCTTCAGACCA-AATTACAAAAATA-CCACTTTTCTTATAATTATTTACAAAA
66 TGGACTATTATGCCTTCATAACATAATTATGAAAATACCCA-TTTTCTTATAATTATTTACTAAA
12044184 T
130 T
* ** *
12044185 AATCCCTTATGAAATTACAAAAATACGATTAT-CATTATATGATAAGAAGTTGACATGTGGCCAA
1 AATCCCTTATGAAATTACCAAAATACCCTT-TCCATTATATGATAAAAAGTTGACATGTGGCCAA
* * * * * * * *
12044249 ATTGA-TAATCTGCCCT-ACTATCATAATTA-CAAAATATCCCTTTTTCTTATAATTATTTATTA
65 ATGGACTATTATGCCTTCA-TAACATAATTATGAAAATA-CCCATTTTCTTATAATTATTTACTA
12044311 AAT
128 AAT
*
12044314 AATTCCC-TATGAAAATACCAAAATACCCTTTCCATTA-ATGATA
1 AA-TCCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATA
12044357 TATATTAAAA
Statistics
Matches: 1049, Mismatches: 242, Indels: 90
0.76 0.18 0.07
Matches are distributed among these distances:
127 27 0.03
128 207 0.20
129 303 0.29
130 456 0.43
131 54 0.05
132 2 0.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.36
Consensus pattern (130 bp):
AATCCCTTATGAAATTACCAAAATACCCTTTCCATTATATGATAAAAAGTTGACATGTGGCCAAA
TGGACTATTATGCCTTCATAACATAATTATGAAAATACCCATTTTCTTATAATTATTTACTAAAT
Found at i:12044711 original size:130 final size:129
Alignment explanation
Indices: 12044369--12045518 Score: 855
Period size: 130 Copynumber: 8.9 Consensus size: 129
12044359 TATTAAAAAA
* * * * * * * * *
12044369 AATCCCTTATGAAATTA-C-AAATATC-ATCCATTATTTGATGAGAAAGTGACATTTGTCCAAAT
1 AATCCCTTAAGAAATTACCAAAATACCTTTCCATTATATGATAAGAAATTAACATGTGGCCAAAT
** * * * *
12044431 ATACTATTATGCCCTTATATCATAATTATGAAAGTACCCATTCTCTTATAATTATTTACTAAAT
66 GGACTATTATGCCCTCATACCATAATTATGAAAATACCCTTTCTCTTATAATTATTTACTAAAT
* * * ** * * *
12044495 TATCCTTTTAAAAAAAAAAACCAAAATGCCATTTCCATTATATGATAAGAAATTAGCATGTGGGC
1 AATCC-CTT--AAGAAATTACCAAAATACC-TTTCCATTATATGATAAGAAATTAACATGTGGCC
* * * * *
12044560 ACATAGATTATTATGCCCTCATATCAAAATTATGAAAATACCCTTTCTCTTATAATTATTTACTA
62 AAATGGACTATTATGCCCTCATACCATAATTATGAAAATACCCTTTCTCTTATAATTATTTACTA
12044625 AAT
127 AAT
** ** * *
12044628 AATCTTTTATTAAATTACCAAAATATCCTTTCCGTTATATGATAAGAAATTATCATGTGGCCAAA
1 AATCCCTTAAGAAATTACCAAAATA-CCTTTCCATTATATGATAAGAAATTAACATGTGGCCAAA
* ** * * * * *
12044693 TGGACTATTATGCCCTCATACCATATTTACAAAAAAAAACCTTTCTTTTACAATTATTTACTAGA
65 TGGACTATTATGCCCTCATACCATAATTA-TGAAAATACCCTTTCTCTTATAATTATTTACTAAA
12044758 T
129 T
* * * * * * * *
12044759 ATTCCCTTATGAAATTTCCAAAAGAACCTTTCAATTATATGATAAGAAATTAAAATATAGCCAAA
1 AATCCCTTAAGAAATTACCAAAA-TACCTTTCCATTATATGATAAGAAATTAACATGTGGCCAAA
* * * * *
12044824 TGGACTATTATTG-CCTCATACCATAATTACGATAATGCCTTTTCTCTTATAATTATTTATTAAA
65 TGGACTATTA-TGCCCTCATACCATAATTATGAAAATACCCTTTCTCTTATAATTATTTACTAAA
12044888 T
129 T
* * * *
12044889 AATCCCATATGAAATTACAAAAATACACTTT-CATTATATGATAAGAATTTAACATGTGGCCAAA
1 AATCCCTTAAGAAATTACCAAAATAC-CTTTCCATTATATGATAAGAAATTAACATGTGGCCAAA
* * * ** * * * * *
12044953 TTGACTATTATACCCTTATACCATAAGAATAAAAATACACATTCTTTTATAATTATTTACTAAGT
65 TGGACTATTATGCCCTCATACCATAATTATGAAAATACCCTTTCTCTTATAATTATTTACTAAAT
* * ** * * * *
12045018 AATTCCTCAAGAAATTACCAAAATACCCATTT-TGTTACATGATAAGTAATTGACATGTGGTCAA
1 AATCCCTTAAGAAATTACCAAAATA-CC-TTTCCATTATATGATAAGAAATTAACATGTGGCCAA
* *** ** * *
12045082 ATAGACTATTATGTTTTCATATTATAATTACT-AAAGTACCATTTCTCTTATAATTATTTACTAA
64 ATGGACTATTATGCCCTCATACCATAATTA-TGAAAATACCCTTTCTCTTATAATTATTTACTAA
12045146 AT
128 AT
* * * * * * * *
12045148 AATCTCC-CAAGAGATTACTAAAATAGCTTGTCCACTATATGAGAAAAAATTAACATGT-GACAA
1 AATC-CCTTAAGAAATTACCAAAATACCTT-TCCATTATATGATAAGAAATTAACATGTGGCCAA
* ** * ** **
12045211 ATTGGTCTATGGTGCCCTCACACCATAATTACAAAAATAATCCC-TT-T-TTATAATGGTTTACT
64 A-TGGACTATTATGCCCTCATACCATAATTATGAAAAT-A-CCCTTTCTCTTATAATTATTTACT
12045273 AAAT
126 AAAT
* * * * * *
12045277 AATCCCCTAAGAAATTA-CATAAATGCCCTTCCCATTATATGATAA-AAATTTACATCTAGCCAA
1 AATCCCTTAAGAAATTACCA-AAAT-ACCTTTCCATTATATGATAAGAAATTAACATGTGGCCAA
** * * * ** *
12045340 ATTAACTATTATGCCCTCATATCA-ACA-AACGAAAATACCCCATCTCTGATAATTATTTACTAA
64 ATGGACTATTATGCCCTCATACCATA-ATTATGAAAATACCCTTTCTCTTATAATTATTTACTAA
12045403 AT
128 AT
* * * * * *
12045405 AAT-CCTCTATGAAATTATCAAAATACTATTTCCATTATATGATAAAAAATTAACATGTTGCTAA
1 AATCCCT-TAAGAAATTACCAAAATAC-CTTTCCATTATATGATAAGAAATTAACATGTGGCCAA
*
12045469 AT-GACTATTATGTCCTCATACCAT-ATTAATGAAAATACCC-TTCTCTTATA
64 ATGGACTATTATGCCCTCATACCATAATT-ATGAAAATACCCTTTCTCTTATA
12045519 GAAATGATCA
Statistics
Matches: 794, Mismatches: 192, Indels: 74
0.75 0.18 0.07
Matches are distributed among these distances:
125 3 0.00
126 6 0.01
127 15 0.02
128 107 0.13
129 190 0.24
130 259 0.33
131 118 0.15
132 8 0.01
133 88 0.11
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (129 bp):
AATCCCTTAAGAAATTACCAAAATACCTTTCCATTATATGATAAGAAATTAACATGTGGCCAAAT
GGACTATTATGCCCTCATACCATAATTATGAAAATACCCTTTCTCTTATAATTATTTACTAAAT
Found at i:12045111 original size:259 final size:257
Alignment explanation
Indices: 12044526--12045494 Score: 735
Period size: 259 Copynumber: 3.7 Consensus size: 257
12044516 CAAAATGCCA
* * * * * * *
12044526 TTTCCATTATATGATAAGAAATTAGCATGTGGGCACATAGATTATTATGCCCTCATATCAAAATT
1 TTTCAATTACATGATAAGAAATTA-CATGTGGCCAAATAGACTATTATGTCCTCATATCATAATT
* * *** * *
12044591 ATGAAAATACCCTTTCTCTTATAATTATTTACTAAATAATCTTTTATTAAATTACCAAAATATCC
65 ACG-AAATACCATTTCTCTTATAATTATTTACTAAATAATCCCATATGAAATTACAAAAATATCC
* * *
12044656 TTTCCGTTATATGATAAGAAATTATCATGTGGCCAAATGGACTATTATGCCCTCATACCATATTT
129 TTTCCATTATATGATAAGAAATTAACATGTGGCCAAATGGACTATTATACCCTCATACCATA--T
* * * *
12044721 ACAAAAAAAAACCTTTCTTTTACAATTATTTACTAGATATTCCCTTATGAAATTTCCAAAAGAAC
192 ACAAAAAAAAACCATTCTTTTACAATTATTTACTAGATATTCCCTCAAGAAATTACCAAAAGAAC
12044786 C
257 C
* * * * * *
12044787 TTTCAATTATATGATAAGAAATTAAAATATAGCCAAATGGACTATTAT-TGCCTCATACCATAAT
1 TTTCAATTACATGATAAGAAATT-ACATGTGGCCAAATAGACTATTATGT-CCTCATATCATAAT
* * *
12044851 TACGATAATGCCTTTTCTCTTATAATTATTTATTAAATAATCCCATATGAAATTACAAAAATA-C
64 TACGA-AATACCATTTCTCTTATAATTATTTACTAAATAATCCCATATGAAATTACAAAAATATC
* * *
12044915 ACTTT-CATTATATGATAAGAATTTAACATGTGGCCAAATTGACTATTATACCCTTATACCATA-
128 -CTTTCCATTATATGATAAGAAATTAACATGTGGCCAAATGGACTATTATACCCTCATACCATAT
* * *
12044978 AGAATAAAAATACACATTCTTTTATAATTATTTACTA-AGTAATT-CCTCAAGAAATTACCAAAA
192 ACAA-AAAAAAAC-CATTCTTTTACAATTATTTACTAGA-T-ATTCCCTCAAGAAATTACCAAAA
* *
12045041 TACCC
253 GAACC
** * * ** *
12045046 ATTT-TGTTACATGATAAGTAATTGACATGTGGTCAAATAGACTATTATGTTTTCATATTATAAT
1 -TTTCAATTACATGATAAGAAATT-ACATGTGGCCAAATAGACTATTATGTCCTCATATCATAAT
* * *
12045110 TACTAAAGTACCATTTCTCTTATAATTATTTACTAAATAATCTCCCA-A-GAGATTACTAAAATA
64 TACGAAA-TACCATTTCTCTTATAATTATTTACTAAATAA--TCCCATATGAAATTACAAAAATA
* * * * * * ** * *
12045173 -GCTTGTCCACTATATGAGAAAAAATTAACATGT-GACAAATTGGTCTATGGTGCCCTCACACCA
126 TCCTT-TCCATTATATGATAAGAAATTAACATGTGGCCAAA-TGGACTATTATACCCTCATACCA
* * * * ** * *
12045236 TAATTACAAAAATAATCC-CT-TTTTATAATGGTTTACTAAATAATCCC-CTAAGAAATTA-CAT
189 T-A-TACAAAAAAAAACCATTCTTTTACAATTATTTACTAGATATTCCCTC-AAGAAATTACCA-
*
12045297 AAATG-CCC
250 AAA-GAACC
* * * * * *
12045305 TTCCCATTATATGATAA-AAATTTACATCTAGCCAAATTA-ACTATTATGCCCTCATATCA-ACA
1 TTTCAATTACATGATAAGAAA-TTACATGTGGCCAAA-TAGACTATTATGTCCTCATATCATA-A
* *** *
12045367 -AACGAAAATACCCCATCTCTGATAATTATTTACTAAATAATCCTC-TATGAAATTATC-AAAAT
63 TTACG-AAATACCATTTCTCTTATAATTATTTACTAAATAATCC-CATATGAAATTA-CAAAAAT
* * * * **
12045429 A-CTATTTCCATTATATGATAAAAAATTAACATGTTGCTAAAT-GACTATTATGTCCTCATACCA
125 ATC-CTTTCCATTATATGATAAGAAATTAACATGTGGCCAAATGGACTATTATACCCTCATACCA
12045492 TAT
189 TAT
12045495 TAATGAAAAT
Statistics
Matches: 566, Mismatches: 107, Indels: 77
0.75 0.14 0.10
Matches are distributed among these distances:
254 1 0.00
255 4 0.01
256 19 0.03
257 73 0.13
258 59 0.10
259 185 0.33
260 103 0.18
261 113 0.20
262 6 0.01
263 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (257 bp):
TTTCAATTACATGATAAGAAATTACATGTGGCCAAATAGACTATTATGTCCTCATATCATAATTA
CGAAATACCATTTCTCTTATAATTATTTACTAAATAATCCCATATGAAATTACAAAAATATCCTT
TCCATTATATGATAAGAAATTAACATGTGGCCAAATGGACTATTATACCCTCATACCATATACAA
AAAAAAACCATTCTTTTACAATTATTTACTAGATATTCCCTCAAGAAATTACCAAAAGAACC
Found at i:12045595 original size:104 final size:104
Alignment explanation
Indices: 12045415--12045622 Score: 371
Period size: 104 Copynumber: 2.0 Consensus size: 104
12045405 AATCCTCTAT
*
12045415 GAAATTATCAAAATACTATTTCCATTATATGATAAAAAATTAACATGTTGCTAAATGACTATTAT
1 GAAATGATCAAAATACTATTTCCATTATATGATAAAAAATTAACATGTTGCTAAATGACTATTAT
* *
12045480 GTCCTCATACCATATTAATGAAAATACCCTTCTCTTATA
66 GTCATCATACCATATTAACGAAAATACCCTTCTCTTATA
*
12045519 GAAATGATCAAAATACTATTTCCATTATATGATAAAAAATTAATATGTTGCTAAATGACTATTAT
1 GAAATGATCAAAATACTATTTCCATTATATGATAAAAAATTAACATGTTGCTAAATGACTATTAT
*
12045584 GTCATCATACCATATTAACGAAAATATCCTTCTCTTATA
66 GTCATCATACCATATTAACGAAAATACCCTTCTCTTATA
12045623 ATTATTTACT
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
104 99 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (104 bp):
GAAATGATCAAAATACTATTTCCATTATATGATAAAAAATTAACATGTTGCTAAATGACTATTAT
GTCATCATACCATATTAACGAAAATACCCTTCTCTTATA
Found at i:12046320 original size:130 final size:129
Alignment explanation
Indices: 12045518--12048260 Score: 1984
Period size: 129 Copynumber: 21.3 Consensus size: 129
12045508 CTTCTCTTAT
* * ** * * * * *
12045518 AGAAATGATCAAAATACTATTTCCATTATATGATAAAAAATTAATATGTTGCTAAAT-GACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * * * * * * * **
12045582 ATGTCATCATACCAT-ATTAACGAAAATA-TCCTTCTCTTATAATTATTTACTAGATAGTCTTCT
66 ATGCCCTCATATCATAATT-ATGAAAATACCCCTT-TTTTATAATTATTTACTAAATAATCCCCT
12045645 A
129 A
* * * ** * * * * * * * *
12045646 TGAAATTATCAAAATTCCAATTCCATTGTAAGATAAGAGATTTGAAAT-TAGTCAAATGAAGTAT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGA-AATTGACATGTGGCCAAATGGACTAT
* ** * * * * *
12045710 TATGCCCTCATACCATAATTATGAAAATGTGTTCCATTTCTTATAATTATTTATTAGACAATCCC
65 TATGCCCTCATATCATAATTATGAAAA--T-ACCCCTTTTTTATAATTATTTACTAAATAATCCC
12045775 CTA
127 CTA
* ** * * * ***
12045778 TGAAATTATTAAAATACTCTTTACATTATATGATACGAAATTGACATGCAACCAAATGGACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * * ** * **
12045843 ACT-CCCTAATATCATAATTACGAAAATACCCCATCTCATATAATTATTTACTAAAT-ATTCTTT
66 A-TGCCCTCATATCATAATTATGAAAATACCCC-TTTTTTATAATTATTTACTAAATAATCCCCT
*
12045906 T
129 A
* * * * *
12045907 AGAAATTACCAAAATGCCTTTTCCATTATATGATAAG-AATTGACATATAGCCAAATAGACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * * * * *
12045971 ATTCCCTCATACCATAATTATAAAAATACCCATTCTTTTATAATT-TTTACTAAAT-ATTCACTA
66 ATGCCCTCATATCATAATTATGAAAATACCCCTT-TTTTATAATTATTTACTAAATAATCCCCTA
* * *
12046034 ATGAAATTACTAAAAT-GCCTTTCCATTAAATGATAAGAAATTG---T-T-GCCAAATGGACTAT
1 A-GAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTAT
** *
12046093 TATGCCCTCATATCATAACCATGAAAATACCCCTTTTTTATAATTATTTA-TAAATAATTCCCTA
65 TATGCCCTCATATCATAATTATGAAAATACCCCTTTTTTATAATTATTTACTAAATAATCCCCTA
* * * * * *
12046157 TGAAATTATCAAAATGCCTTTTCCATTATATGATAAGAAATTCACATGTGGCCAAATTGACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * *
12046222 ATGCCCTCATATCGTAATTAAGAAAATACCCCATTTTTTAAAAATTA-TTACTAAATAATCCCCT
66 ATGCCCTCATATCATAATTATGAAAATACCCC-TTTTTT-ATAATTATTTACTAAATAATCCCCT
12046286 A
129 A
* * * * * *
12046287 AAAAATTATCACAATACCCTTTACATTACATGATAAGAAATTGACATATGGCCAAATGGACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * ** * * * * * *
12046352 ATTCCTTCATA-CTATAATTACAAAAAAATCCATTCTCTTATAATTA-TTACTAAATAATCACTT
66 ATGCCCTCATATC-ATAATTATGAAAATACCCCTT-TTTTATAATTATTTACTAAATAATCCCCT
12046415 A
129 A
** * * * *
12046416 TTAAATTACCAAAATA-CATTTCTATT-TATGATAAGAAGTTGACATGTGGCTAAATGGACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * * * *
12046479 ATGCCTTCATA-CTATAATT-TCAAAAATACCCCTTTTTCTATAATTATTTGCTAAATAATCACA
66 ATGCCCTCATATC-ATAATTAT-GAAAATACCCCTTTTT-TATAATTATTTACTAAATAATCCCC
12046542 TA
128 TA
* * * * * * *
12046544 TGAAATTAGCAAAATGCCCTTTTCATTATATGATAAGAAATTTACATATGGCCAAATAGACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * * *
12046609 ATGCCCTCATACCATAGTTATGAAAATATCCATTCTTTTATAATTATTTACTAAATAAT-CCCTC
66 ATGCCCTCATATCATAATTATGAAAATACCCCTT-TTTTATAATTATTTACTAAATAATCCCCT-
12046673 A
129 A
* ** ** * * * *
12046674 AAAAATTA-CTGAATTGCCTTTCCATTATATGATAAAAAATTTACATGTGACCAAATGTACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * * *
12046738 ATGCCCTCATACCATAATTATGAAAATACCCCTTCCTCTATAATTA-TTACTAAATAATCCCTTA
66 ATGCCCTCATATCATAATTATGAAAATACCCCTT-TTTTATAATTATTTACTAAATAATCCCCTA
** * * *
12046802 TTAAATTATCAAAATACCCTTTCAATTATATGATAAGAAGTTGACATGTGGCCAAATGGACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * * * * * * * * *
12046867 ATACCCTTATATCATAATTATGAATATGCTCATTCTCTTATAAATATTTATTAAATAATCTTCC-
66 ATGCCCTCATATCATAATTATGAAAATACCCCTT-TTTTATAATTATTTACTAAATAATC-CCCT
12046931 A
129 A
* * * * ** * *
12046932 A-AAATTACCAAAATGCCATTTTCATTATGTGATAAGAAATTGACATGTGGCCAAATTAAGTACT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * * * ** * * *
12046996 ATACCCTCATATCATAATAATGAAAATACCTCTTATCTTATCCTTATTTACCAAATAATCTCTTA
66 ATGCCCTCATATCATAATTATGAAAATACCCCTT-TTTTATAATTATTTACTAAATAATCCCCTA
* * * ** * * *
12047061 GGAAATTACCAAATTGCCCTTTTTATTAAATGATAAGAAATTAACATATGGCCAAATGGACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * * * * * *
12047126 ATGCCTTCATACCATAGTTATGAAAATACCACTACTCTTT-TAATTATTTACTAAATAATTCCTT
66 ATGCCCTCATATCATAATTATGAAAATACCCCT--TTTTTATAATTATTTACTAAATAATCCCCT
12047190 A
129 A
* * * * *
12047191 CA-AAATTACAAAAACACCCTTTTTCATTATATGATAA-AAATTTACATGTGGCCAAATAGACTA
1 -AGAAATTACCAAAATACCC-TTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTA
* * * **
12047254 CTATGACCTCATACCATAATTATGAAAATA-CCCTTTTCTTATAATTATTTACTAAATAAT-ATC
64 TTATGCCCTCATATCATAATTATGAAAATACCCCTTTT-TTATAATTATTTACTAAATAATCCCC
12047317 TCA
128 T-A
* * * * * * * *
12047320 AGAAATTACTAAAATACCATTTTCGTTATATGATAAGAATTTGACATGTGACCAAATGGATTATC
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * * * * * *
12047385 ATGCCCTCATATGATAATTA-CAAGAAAACCCC-CTCTTATAATTGTTTACCT-AATAAT-TCCT
66 ATGCCCTCATATCATAATTATGAA-AATACCCCTTTTTTATAATTATTTA-CTAAATAATCCCCT
12047446 A
129 A
* * * * * *
12047447 AGGAAATTACCAAAATGCCTTTTCCATTAAATGATAA-AAATTTACATATGGCCAAATTGACTAT
1 A-GAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTAT
* * * * * *
12047511 TATGCCATAATATCATAATTATGAAAAT-TCCCTTTCTCTTATTATT-TTTAATAAAATAATCCA
65 TATGCCCTCATATCATAATTATGAAAATACCCCTTT-T-TTATAATTATTTACT-AAATAATCCC
12047574 CTA
127 CTA
* * * * * *
12047577 AGAAATTACCAAAATACCCATTCCAATACATGATAAGAAATTGACAAGTGGCTAAATAGACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * ** * * * * *
12047642 ATTCACTCATGCCATAATTATGAAAATACCCATTCTATATAATTA-TTACTAAAAAATCCCATTA
66 ATGCCCTCATATCATAATTATGAAAATACCCCTTTTTTATAATTATTTACTAAATAATCCC-CTA
** * * ** * ** *
12047706 TTAAATTATCAAAATACCCTTTTCATTATACAATAAAAAAATTGACATGTGGTTAAA-AGACTAT
1 AGAAATTACCAAAATACCCTTTCCATTATATGAT-AAGAAATTGACATGTGGCCAAATGGACTAT
* * * * * * *
12047770 TATGCACTCATACCACAATTATGAAAATATCTCTTCTCTTATAATTATTTACTAAAAAATCCCCT
65 TATGCCCTCATATCATAATTATGAAAATACCCCTT-TTTTATAATTATTTACTAAATAATCCCCT
12047835 A
129 A
** * * ** * * * * * * * *
12047836 TTAAATTAACAAAATGCCCACTACATTATATAATAAAAAATTAACATATGGCAAAATTGACTATC
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* * *
12047901 ATGCCCTTATATCATAATTATGAAAATACCCTTTCTTTTATAATTATTTACTAAATAAT-CCTTA
66 ATGCCCTCATATCATAATTATGAAAATACCCCTT-TTTTATAATTATTTACTAAATAATCCCCTA
* * * * * * *
12047965 AAAAATTACTAAAATGCCCTTTCCATTATATGATAAGAAATTGATATATAGTCAAATGGACTATT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
* ** * ***
12048030 ATGCCTTCACGTCATAATTTTGAAAATACCCCTACACTTATAATTATTTACTAAA-AACTCCCCT
66 ATGCCCTCATATCATAATTATGAAAATACCCCT-TTTTTATAATTATTTACTAAATAA-TCCCCT
12048094 A
129 A
** ** * * * * * * *
12048095 TTAAATTACCAAGGTAGCCATTCTAGTATATGATAAGAAATTGACATACT-GCTAAATGGGCTAT
1 AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACAT-GTGGCCAAATGGACTAT
* ** ** * * * *
12048159 TATGCCCCCATA-CGATAAGGACAAAAATACTCGTTCTTTTATAATAATTT-CTTAAATAAT-TC
65 TATGCCCTCATATC-ATAATTATGAAAATACCCCTT-TTTTATAATTATTTAC-TAAATAATCCC
12048221 CTA
127 CTA
* * *
12048224 ATGAAATTACCAAAGTACCATTTCAATTATATG-TAAG
1 A-GAAATTACCAAAATACCCTTTCCATTATATGATAAG
12048261 TGTAAACACC
Statistics
Matches: 2075, Mismatches: 461, Indels: 157
0.77 0.17 0.06
Matches are distributed among these distances:
122 27 0.01
123 76 0.04
124 1 0.00
125 1 0.00
126 6 0.00
127 152 0.07
128 296 0.14
129 715 0.34
130 656 0.32
131 53 0.03
132 88 0.04
133 4 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.35
Consensus pattern (129 bp):
AGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
ATGCCCTCATATCATAATTATGAAAATACCCCTTTTTTATAATTATTTACTAAATAATCCCCTA
Found at i:12047275 original size:904 final size:890
Alignment explanation
Indices: 12045707--12048094 Score: 2425
Period size: 904 Copynumber: 2.6 Consensus size: 890
12045697 TCAAATGAAG
* * *
12045707 TATTATGCCCTCATACCATAATTATGAAAATGTGTTCCATT-TCTTATAATTATTTATTAGACAA
1 TATTATGCCCTCATACCATAATTATGAAAA----TTCCATTCTCTTATAATTATTTAATAAATAA
* * * * * **
12045771 TCCC-CTATGAAATTATTAAAATACTCTTTACATTATATGATACGAAATTGACATGCAACCAAAT
62 TCCCTC-AAGAAATTACTAAATTAC-CTTTCCATTATATGATAAGAAATTGACATGTGACCAAAT
* * * *
12045835 GGACTATTACTCCCTAATATCATAATTACGAAAATACCCCATCTCATATAATTATTTACTAAATA
125 -GACTATTA-TCCCTCATACCATAATTATGAAAATACCCCTTCTC-TATAATTA-TTACTAAATA
* ** * * * * * *
12045900 TTCTTTTA-GAAATTACCAAAATGCCTTTTCCATTATATGATAAGAATTGACATATAGCCAAATA
186 ATCCCTTATTAAATTATCAAAATACCCTTT-CATTATATGATAAGAATTGACATGTGGCCAAATA
* * * * * * *
12045964 GACTATTATTCCCTCATACCATAATTATAAAAATACCCATTCTTTTAT-AATTTTTACTAAATAT
250 GACTATTATACCCTCATACCATAATTATGAATAT-CTCATTCTCTTATAAATATTTACTAAATAA
* * * * *
12046028 TCACTAATGAAATTACTAAAATGCC-TTTCCATTAAATGATAAGAAATTG---TT-GCCAAATGG
314 TCACCAA--AAATTACCAAAATGCCATTTACATTATATGATAAGAAATTGACATTGGCCAAATTG
** *
12046088 ACTATTATGCCCTCATATCATAACCATGAAAATACCCCTTTTTTATAATTATTTA-TAAATAAT-
377 ACTA-TATGCCCTCATATCATAATAATGAAAATA-CCCTTTCTTATAATTATTTACTAAATAATC
* * * * * *
12046151 TCCCTATGAAATTATCAAAATG-CCTTTTCCATTATATGATAAGAAATTCACATGTGGCCAAATT
440 T-CTTAAGAAATTACCAAAATGCCCTTTT-CATTATATGATAAGAAATTAACATATGGCCAAATG
* * * * *
12046215 GACTATTATGCCCTCATATCGTAATTAAGAAAATACCCCA-TTTTTTAAAAATTA-TTACTAAAT
503 GACTATTATGCCTTCATATCATAATTATGAAAATACCCTACTCTTTT---AATTATTTACTAAAT
* *
12046278 AATCCCCTAAAAAATTATCACAATACCCTTTACATTACATGATAAGAAATTGACATATGGCCAAA
565 AATCCCCTAAAAAATTATCAAAACACCCTTTACATTACATGATAAGAAATTGACATATGGCCAAA
* * * *
12046343 TGGACTATTATTCCTTCATACTATAATTACAAAAAAATCCATTCTCTTATAATTA-TTACTAAAT
630 TAGACTACTATACCTTCATACCATAATTACAAAAAAA-CCATTCTCTTATAATTATTTACTAAAT
* ** * * *
12046407 AATCA-CTTATTAAATTACCAAAATA-CA-TTTC-TATTTATGATAAGAAGTTGACATGTGGCTA
694 AAT-ATCTCAAGAAATTACCAAAATACCATTTTCGT-TATATGATAAGAAGTTGACATGTGACCA
* * * * * *
12046468 AATGGACTATTATGCCTTCATACT-ATAATTTCAA-AAATACCCCTTTTTCTATAATTATTT-GC
757 AATGGACTATCATGCCCTCATA-TGATAATTACAAGAAA-ACCCC-CTCT-TATAATTATTTACC
* * *
12046530 TAAATAA-TCAC-ATATGAAATTAGCAAAATGCCCTTTT-CATTATATGATAAGAAATTTACATA
818 T-AATAATTC-CTA-AGGAAATTACCAAAATG-CCTTTTCCATTAAATGATAA-AAATTTACATA
12046592 TGGCCAAATAGAC
878 TGGCCAAATAGAC
* * *
12046605 TATTATGCCCTCATACCATAGTTATGAAAATATCCATTCTTTTATAATTATTTACTAAATAATCC
1 TATTATGCCCTCATACCATAATTATGAAAAT-TCCATTCTCTTATAATTATTTAATAAATAATCC
* * * * *
12046670 CTCAAAAAATTACTGAATTGCCTTTCCATTATATGATAAAAAATTTACATGTGACCAAATGTACT
65 CTCAAGAAATTACTAAATTACCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATG-ACT
12046735 ATTATGCCCTCATACCATAATTATGAAAATACCCCTTCCTCTATAATTATTACTAAATAATCCCT
129 ATTAT-CCCTCATACCATAATTATGAAAATACCCCTT-CTCTATAATTATTACTAAATAATCCCT
*
12046800 TATTAAATTATCAAAATACCCTTTCAATTATATGATAAGAAGTTGACATGTGGCCAAATGGACTA
192 TATTAAATTATCAAAATACCCTTTC-ATTATATGATAAGAA-TTGACATGTGGCCAAATAGACTA
* * * *
12046865 TTATACCCTTATATCATAATTATGAATATGCTCATTCTCTTATAAATATTTATTAAATAATCTTC
255 TTATACCCTCATACCATAATTATGAATAT-CTCATTCTCTTATAAATATTTACTAAATAATC-AC
* * * *
12046930 CAAAAATTACCAAAATGCCATTTTCATTATGTGATAAGAAATTGACATGTGGCCAAATTAAGTAC
318 CAAAAATTACCAAAATGCCATTTACATTATATGATAAGAAATTGACAT-TGGCCAAATTGACTA-
* ** *
12046995 TATACCCTCATATCATAATAATGAAAATACCTCTTATCTTATCCTTATTTACCAAATAATCTCTT
381 TATGCCCTCATATCATAATAATGAAAATACC-CTT-TCTTATAATTATTTACTAAATAATCTCTT
* * * *
12047060 AGGAAATTACCAAATTGCCCTTTTTATTAAATGATAAGAAATTAACATATGGCCAAATGGACTAT
444 AAGAAATTACCAAAATGCCCTTTTCATTATATGATAAGAAATTAACATATGGCCAAATGGACTAT
* * * *
12047125 TATGCCTTCATACCATAGTTATGAAAATACCACTACTCTTTTAATTATTTACTAAATAATTCCTT
509 TATGCCTTCATATCATAATTATGAAAATACC-CTACTCTTTTAATTATTTACTAAATAATCCCCT
* * * * *
12047190 ACAAAATTA-CAAAAACACCCTTTTTCATTATATGATAA-AAATTTACATGTGGCCAAATAGACT
573 AAAAAATTATC-AAAACACCC-TTTACATTACATGATAAGAAATTGACATATGGCCAAATAGACT
** * * *
12047253 ACTATGACC-TCATACCATAATTATGAAAATACCCTTTTCTTATAATTATTTACTAAATAATATC
636 ACTAT-ACCTTCATACCATAATTACAAAAAAACCATTCTCTTATAATTATTTACTAAATAATATC
* * *
12047317 TCAAGAAATTACTAAAATACCATTTTCGTTATATGATAAGAATTTGACATGTGACCAAATGGATT
700 TCAAGAAATTACCAAAATACCATTTTCGTTATATGATAAGAAGTTGACATGTGACCAAATGGACT
*
12047382 ATCATGCCCTCATATGATAATTACAAGAAAACCCCCTCTTATAATTGTTTACCTAATAATTCCTA
765 ATCATGCCCTCATATGATAATTACAAGAAAACCCCCTCTTATAATTATTTACCTAATAATTCCTA
*
12047447 AGGAAATTACCAAAATGCCTTTTCCATTAAATGATAAAAATTTACATATGGCCAAATTGAC
830 AGGAAATTACCAAAATGCCTTTTCCATTAAATGATAAAAATTTACATATGGCCAAATAGAC
* * * * *
12047508 TATTATGCCATAATATCATAATTATGAAAATTCCCTTTCTCTTATTATT-TTTAATAAAATAATC
1 TATTATGCCCTCATACCATAATTATGAAAATT-CCATTCTCTTATAATTATTTAAT-AAATAATC
* * * * * * * *
12047572 CACT-AAGAAATTACCAAAATACCCATTCCAATACATGATAAGAAATTGACAAGTGGCTAAATAG
64 C-CTCAAGAAATTACTAAATTA-CCTTTCCATTATATGATAAGAAATTGACATGTGACCAAAT-G
* * * * *
12047636 ACTATTATTCACTCATGCCATAATTATGAAAATACCCATTCTATATAATTATTACTAAAAAATCC
126 ACTATTA-TCCCTCATACCATAATTATGAAAATACCCCTTCTCTATAATTATTACTAAATAATCC
** * **
12047701 CATTATTAAATTATCAAAATACCCTTTTCATTATACAATAAAAAAATTGACATGTGGTTAAA-AG
190 C-TTATTAAATTATCAAAATACCC-TTTCATTATATGAT--AAGAATTGACATGTGGCCAAATAG
* * * * *
12047765 ACTATTATGCACTCATACCACAATTATGAAAATATCTC-TTCTCTTATAATTATTTACTAAAAAA
251 ACTATTATACCCTCATACCATAATTATG--AATATCTCATTCTCTTATAAATATTTACTAAATAA
* * * * * * * *
12047829 TCCCCTATTAAATTAACAAAATGCCCA-CTACATTATATAATAAAAAATTAACATATGGCAAAAT
314 TCACC-A-AAAATTACCAAAATG-CCATTTACATTATATGATAAGAAATTGACAT-TGGCCAAAT
* *
12047893 TGACTATCATGCCCTTATATCATAATTATGAAAATACCCTTTCTTTTATAATTATTTACTAAATA
375 TGACTAT-ATGCCCTCATATCATAATAATGAAAATACCCTTTC--TTATAATTATTTACTAAATA
* * * * * * *
12047958 ATC-CTTAAAAAATTACTAAAATGCCCTTTCCATTATATGATAAGAAATTGATATATAGTCAAAT
437 ATCTCTTAAGAAATTACCAAAATGCCCTTTTCATTATATGATAAGAAATTAACATATGGCCAAAT
** * * *
12048022 GGACTATTATGCCTTCACGTCATAATTTTGAAAATACCCCTACACTTATAATTATTTACTAAA-A
502 GGACTATTATGCCTTCATATCATAATTATGAAAATA-CCCTACTCTTTTAATTATTTACTAAATA
12048086 ACTCCCCTA
566 A-TCCCCTA
12048095 TTAAATTACC
Statistics
Matches: 1239, Mismatches: 192, Indels: 112
0.80 0.12 0.07
Matches are distributed among these distances:
894 19 0.02
895 113 0.09
896 108 0.09
897 37 0.03
898 32 0.03
900 1 0.00
901 3 0.00
902 45 0.04
903 154 0.12
904 491 0.40
905 154 0.12
906 78 0.06
907 4 0.00
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (890 bp):
TATTATGCCCTCATACCATAATTATGAAAATTCCATTCTCTTATAATTATTTAATAAATAATCCC
TCAAGAAATTACTAAATTACCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATGACTAT
TATCCCTCATACCATAATTATGAAAATACCCCTTCTCTATAATTATTACTAAATAATCCCTTATT
AAATTATCAAAATACCCTTTCATTATATGATAAGAATTGACATGTGGCCAAATAGACTATTATAC
CCTCATACCATAATTATGAATATCTCATTCTCTTATAAATATTTACTAAATAATCACCAAAAATT
ACCAAAATGCCATTTACATTATATGATAAGAAATTGACATTGGCCAAATTGACTATATGCCCTCA
TATCATAATAATGAAAATACCCTTTCTTATAATTATTTACTAAATAATCTCTTAAGAAATTACCA
AAATGCCCTTTTCATTATATGATAAGAAATTAACATATGGCCAAATGGACTATTATGCCTTCATA
TCATAATTATGAAAATACCCTACTCTTTTAATTATTTACTAAATAATCCCCTAAAAAATTATCAA
AACACCCTTTACATTACATGATAAGAAATTGACATATGGCCAAATAGACTACTATACCTTCATAC
CATAATTACAAAAAAACCATTCTCTTATAATTATTTACTAAATAATATCTCAAGAAATTACCAAA
ATACCATTTTCGTTATATGATAAGAAGTTGACATGTGACCAAATGGACTATCATGCCCTCATATG
ATAATTACAAGAAAACCCCCTCTTATAATTATTTACCTAATAATTCCTAAGGAAATTACCAAAAT
GCCTTTTCCATTAAATGATAAAAATTTACATATGGCCAAATAGAC
Found at i:12048188 original size:259 final size:258
Alignment explanation
Indices: 12045542--12048260 Score: 2029
Period size: 259 Copynumber: 10.5 Consensus size: 258
12045532 TACTATTTCC
* * * * *
12045542 ATTATATGATAAAAAATT-A-ATATGTTGCTAAAT-GACTATTATGTCATCATACCAT-ATTAAC
1 ATTATATGATAAGAAATTGACATATG--GCCAAATGGACTATTATGCCCTCATA-CATAATT-AT
* * * * * ** * * **
12045603 GAAAATATCC-TTCTCTTATAATTATTTACTAGATAGTCTTCTATGAAATTATCAAAATTCCAAT
62 GAAAATACCCATTCTTTTATAATTATTTACTAAATAATCCT-TAAAAAATTACCAAAATGCCCTT
* * * * * * * *
12045667 TCCATTGTAAGATAAGAGATTTGAAAT-TAGTCAAAT-GAAGTATTATGCCCTCATACCATAATT
126 TCCATTATATGATAAGA-AATTGACATGTGGCCAAATAG-ACTATTATGCCCTCATATCATAATT
** * * * * **
12045730 ATGAAAATGTGTTCCATT-TCTTATAATTATTTATTAGACAATCCCCTATGAAATTATTAAAATA
189 ATGAAAA--T-ACCCCTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA
*
12045794 -CTCTTTAC-
251 GC-CATT-CT
* **** * *
12045802 ATTATATGATACGAAATTGACATGCAACCAAATGGACTATTACT-CCCTAATATCATAATTACGA
1 ATTATATGATAAGAAATTGACATATGGCCAAATGGACTATTA-TGCCCTCATA-CATAATTATGA
** * * * * *
12045866 AAATACCCCA-TCTCATATAATTATTTACTAAATATTCTTTTAGAAATTACCAAAATGCCTTTTC
64 AAATA-CCCATTCTTTTATAATTATTTACTAAATAATCCTTAAAAAATTACCAAAATGCCCTTTC
* * * * *
12045930 CATTATATGATAAG-AATTGACATATAGCCAAATAGACTATTATTCCCTCATACCATAATTATAA
128 CATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATATCATAATTATGA
* * * * * *
12045994 AAATACCCATTCTTTTATAATT-TTTACTAAAT-ATTCACTAATGAAATTACTAAAAT-GCCTTT
193 AAATACCCCTTCTCTTATAATTATTTACTAAATAATCCCCT-ATGAAATTACCAAAATAGCCATT
*
12046056 CC
257 CT
* **
12046058 ATTAAATGATAAGAAATTG---T-T-GCCAAATGGACTATTATGCCCTCATATCATAACCATGAA
1 ATTATATGATAAGAAATTGACATATGGCCAAATGGACTATTATGCCCTCATA-CATAATTATGAA
* * ** * *
12046118 AATACCCCTT-TTTTATAATTATTTA-TAAATAATTCCCTATGAAATTATCAAAATGCCTTTTCC
65 AATACCCATTCTTTTATAATTATTTACTAAATAA-TCCTTAAAAAATTACCAAAATGCCCTTTCC
* * * *
12046181 ATTATATGATAAGAAATTCACATGTGGCCAAATTGACTATTATGCCCTCATATCGTAATTAAGAA
129 ATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATATCATAATTATGAA
* * ** * * * *
12046246 AATACCCCATT-TTTTAAAAATTA-TTACTAAATAATCCCCTAAAAAATTATCACAATACCCTTT
194 AATACCCC-TTCTCTT-ATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAGCCATT
12046309 AC-
257 -CT
* * * **
12046311 ATTACATGATAAGAAATTGACATATGGCCAAATGGACTATTATTCCTTCATACTATAATTACAAA
1 ATTATATGATAAGAAATTGACATATGGCCAAATGGACTATTATGCCCTCATAC-ATAATTATGAA
* * * ** * * *
12046376 AAAATCCATTCTCTTATAATTA-TTACTAAATAATCACTTATTAAATTACCAAAAT-ACATTTCT
65 AATACCCATTCTTTTATAATTATTTACTAAATAATC-CTTAAAAAATTACCAAAATGCCCTTTCC
* * * * *
12046439 ATT-TATGATAAGAAGTTGACATGTGGCTAAATGGACTATTATGCCTTCATA-CTATAATT-TCA
129 ATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATATC-ATAATTAT-G
* * * * * *
12046501 AAAATACCCCTT-TTTCTATAATTATTTGCTAAATAATCACATATGAAATTAGCAAAAT-GCCCT
192 AAAATACCCCTTCTCT-TATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAGCCAT
*
12046564 TTT
256 TCT
* * *
12046567 CATTATATGATAAGAAATTTACATATGGCCAAATAGACTATTATGCCCTCATACCATAGTTATGA
1 -ATTATATGATAAGAAATTGACATATGGCCAAATGGACTATTATGCCCTCATA-CATAATTATGA
* * ** *
12046632 AAATATCCATTCTTTTATAATTATTTACTAAATAATCCCTCAAAAAATTACTGAATTG-CCTTTC
64 AAATACCCATTCTTTTATAATTATTTACTAAATAAT-CCTTAAAAAATTACCAAAATGCCCTTTC
* * * *
12046696 CATTATATGATAAAAAATTTACATGTGACCAAAT-GTACTATTATGCCCTCATACCATAATTATG
128 CATTATATGATAAGAAATTGACATGTGGCCAAATAG-ACTATTATGCCCTCATATCATAATTATG
* * * * *
12046760 AAAATACCCCTTC-CTCTATAATTA-TTACTAAATAATCCCTTATTAAATTATCAAAATACCCTT
192 AAAATACCCCTTCTCT-TATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAGCCAT
*
12046823 TCA
256 TCT
* * * *
12046826 ATTATATGATAAGAAGTTGACATGTGGCCAAATGGACTATTATACCCTTATATCATAATTATGAA
1 ATTATATGATAAGAAATTGACATATGGCCAAATGGACTATTATGCCCTCATA-CATAATTATGAA
* * * * * * * * *
12046891 TATGCTCATTCTCTTATAAATATTTATTAAATAAT-CTTCCAAAAATTACCAAAATGCCATTTTC
65 AATACCCATTCTTTTATAATTATTTACTAAATAATCCTT-AAAAAATTACCAAAATGCCCTTTCC
* * * * *
12046955 ATTATGTGATAAGAAATTGACATGTGGCCAAATTA-AGTACTATACCCTCATATCATAATAATGA
129 ATTATATGATAAGAAATTGACATGTGGCCAAA-TAGACTATTATGCCCTCATATCATAATTATGA
* * ** * * * * * *
12047019 AAATACCTCTTATCTTATCCTTATTTACCAAATAATCTCTTAGGAAATTACC-AAATTGCCCTTT
193 AAATACCCCTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAG-CCATT
*
12047083 TT
257 CT
* * * *
12047085 ATTAAATGATAAGAAATTAACATATGGCCAAATGGACTATTATGCCTTCATACCATAGTTATGAA
1 ATTATATGATAAGAAATTGACATATGGCCAAATGGACTATTATGCCCTCATA-CATAATTATGAA
* * * **
12047150 AATA-CCACTACTCTTT-TAATTATTTACTAAATAATTCCTTACAAAATTACAAAAACACCCTTT
65 AATACCCA-TTCT-TTTATAATTATTTACTAAATAA-TCCTTAAAAAATTACCAAAATGCCC-TT
* * * * *
12047213 TTCATTATATGATAA-AAATTTACATGTGGCCAAATAGACTACTATGACCTCATACCATAATTAT
126 TCCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATATCATAATTAT
* ** * *
12047277 GAAAATA-CCCTTTTCTTATAATTATTTACTAAATAAT-ATCTCAAGAAATTACTAAAATA-CCA
191 GAAAATACCCCTTCTCTTATAATTATTTACTAAATAATCCCCT-ATGAAATTACCAAAATAGCCA
*
12047339 TTTT
255 TTCT
* * * * * * * *
12047343 CGTTATATGATAAGAATTTGACATGTGACCAAATGGATTATCATGCCCTCATATGATAATTA-CA
1 -ATTATATGATAAGAAATTGACATATGGCCAAATGGACTATTATGCCCTCATA-CATAATTATGA
* * * * * *
12047407 AGAAAACCC--CCTCTTATAATTGTTTACCT-AATAATTCC-TAAGGAAATTACCAAAATGCCTT
64 A-AATACCCATTCTTTTATAATTATTTA-CTAAATAA-TCCTTAA-AAAATTACCAAAATGCCCT
* * * * * *
12047468 TTCCATTAAATGATAA-AAATTTACATATGGCCAAATTGACTATTATGCCATAATATCATAATTA
125 TTCCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATATCATAATTA
* * * * * * *
12047532 TGAAAATTCCCTTTCTCTTATTATT-TTTAATAAAATAATCCACTAAGAAATTACCAAAATACCC
190 TGAAAATACCCCTTCTCTTATAATTATTTACT-AAATAATCCCCTATGAAATTACCAAAATAGCC
*
12047596 ATTCC
254 ATTCT
* * * * * * *
12047601 AATACATGATAAGAAATTGACA-AGTGGCTAAATAGACTATTATTCACTCATGCCATAATTATGA
1 ATTATATGATAAGAAATTGACATA-TGGCCAAATGGACTATTATGCCCTCAT-ACATAATTATGA
* * ** * *
12047665 AAATACCCATTC-TATATAATTA-TTACTAAAAAATCCCATTATTAAATTATCAAAATACCCTTT
64 AAATACCCATTCTTTTATAATTATTTACTAAATAAT-CC-TTAAAAAATTACCAAAATGCCCTTT
* ** * ** * * *
12047728 TCATTATACAATAAAAAAATTGACATGTGGTTAAA-AGACTATTATGCACTCATACCACAATTAT
127 CCATTATATGAT-AAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATATCATAATTAT
* * * * *
12047792 GAAAATATCTCTTCTCTTATAATTATTTACTAAAAAATCCCCTATTAAATTAACAAAAT-GCCCA
191 GAAAATACCCCTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAG-CCA
*
12047856 CTAC-
255 -TTCT
* * * * * * *
12047860 ATTATATAATAAAAAATTAACATATGGCAAAATTGACTATCATGCCCTTATATCATAATTATGAA
1 ATTATATGATAAGAAATTGACATATGGCCAAATGGACTATTATGCCCTCATA-CATAATTATGAA
* *
12047925 AATACCCTTTCTTTTATAATTATTTACTAAATAATCCTTAAAAAATTACTAAAATGCCCTTTCCA
65 AATACCCATTCTTTTATAATTATTTACTAAATAATCCTTAAAAAATTACCAAAATGCCCTTTCCA
* * * * * * ** *
12047990 TTATATGATAAGAAATTGATATATAGTCAAATGGACTATTATGCCTTCACGTCATAATTTTGAAA
130 TTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATATCATAATTATGAAA
* * * **
12048055 ATACCCCTACACTTATAATTATTTACTAAA-AACTCCCCTATTAAATTACCAAGGTAGCCATTCT
195 ATACCCCTTCTCTTATAATTATTTACTAAATAA-TCCCCTATGAAATTACCAAAATAGCCATTCT
* * * * ** **
12048119 AGTATATGATAAGAAATTGACATACT-GCTAAATGGGCTATTATGCCCCCATACGATAAGGACAA
1 ATTATATGATAAGAAATTGACATA-TGGCCAAATGGACTATTATGCCCTCATAC-ATAATTATGA
* * * * * * *
12048183 AAATACTCGTTCTTTTATAATAATTT-CTTAAATAATTCC-TAATGAAATTACCAAAGTACCATT
64 AAATACCCATTCTTTTATAATTATTTAC-TAAATAA-TCCTTAA-AAAATTACCAAAATGCCCTT
*
12048246 TCAATTATATG-TAAG
126 TCCATTATATGATAAG
12048261 TGTAAACACC
Statistics
Matches: 1967, Mismatches: 392, Indels: 201
0.77 0.15 0.08
Matches are distributed among these distances:
249 6 0.00
250 55 0.03
251 90 0.05
252 27 0.01
253 29 0.01
254 1 0.00
255 1 0.00
256 120 0.06
257 332 0.17
258 363 0.18
259 627 0.32
260 194 0.10
261 88 0.04
262 34 0.02
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.35
Consensus pattern (258 bp):
ATTATATGATAAGAAATTGACATATGGCCAAATGGACTATTATGCCCTCATACATAATTATGAAA
ATACCCATTCTTTTATAATTATTTACTAAATAATCCTTAAAAAATTACCAAAATGCCCTTTCCAT
TATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATATCATAATTATGAAAA
TACCCCTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAGCCATTCT
Found at i:12048499 original size:3 final size:3
Alignment explanation
Indices: 12048491--12048531 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
12048481 AGAATTGGTA
* * *
12048491 TTG TTG TTG TTA TTG TTA TTG TTG TTG TTG TTG TTA TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
12048532 ATTATTATTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.07, C:0.00, G:0.24, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:12048500 original size:6 final size:6
Alignment explanation
Indices: 12048484--12048545 Score: 70
Period size: 6 Copynumber: 10.3 Consensus size: 6
12048474 ATGACCTAGA
* * * *
12048484 ATTGGT ATTGTT GTTGTT ATTGTT ATTGTT GTTGTT GTTGTT ATTGTT
1 ATTGTT ATTGTT ATTGTT ATTGTT ATTGTT ATTGTT ATTGTT ATTGTT
* *
12048532 ATTATT ATTATT AT
1 ATTGTT ATTGTT AT
12048546 ATTTTAAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.16, C:0.00, G:0.19, T:0.65
Consensus pattern (6 bp):
ATTGTT
Found at i:12053747 original size:65 final size:65
Alignment explanation
Indices: 12053656--12053857 Score: 194
Period size: 65 Copynumber: 3.1 Consensus size: 65
12053646 CAAGGCCAAA
* * ** * * *
12053656 ATGAGTGACTGGGACTAAACTGCAAGTAAAAAAAATGAATGATCTAGACTGAACCAAGATCGAAG
1 ATGAGTGACCGAGACTAAACCACAAGTAAGAAAAATGAATAATCTGGACTGAACCAAGATCGAAG
* * * * * *
12053721 ATAAGTGACCCG-GACTAAATCACAAGTTAGGAAAATGAATAATTTGGACT-AAGCCAAGATCAA
1 ATGAGTGA-CCGAGACTAAACCACAAGTAAGAAAAATGAATAATCTGGACTGAA-CCAAGATCGA
12053784 AG
64 AG
* * * * * *
12053786 ATGAGTG-CTGAGATTGAACCACAAGTAAGAAAAATAAATAATCTGGATTGAACCAAGATTGAAG
1 ATGAGTGACCGAGACTAAACCACAAGTAAGAAAAATGAATAATCTGGACTGAACCAAGATCGAAG
12053850 ATGAGTGA
1 ATGAGTGA
12053858 TTGGGATTGA
Statistics
Matches: 108, Mismatches: 24, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
63 2 0.02
64 49 0.45
65 55 0.51
66 2 0.02
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.20
Consensus pattern (65 bp):
ATGAGTGACCGAGACTAAACCACAAGTAAGAAAAATGAATAATCTGGACTGAACCAAGATCGAAG
Found at i:12053826 original size:64 final size:65
Alignment explanation
Indices: 12053599--12053889 Score: 191
Period size: 64 Copynumber: 4.5 Consensus size: 65
12053589 AAAAGTTCTA
* * * * * * * * **
12053599 ACTGGGATTGAACTACAAATTAGAAAGATAAATGA-CTTGGACCGAGCCAAGGCCAAA-ATGAGT
1 ACTGAGATTGAACCACAAGTAAGAAAAATAAATAATC-TGGACTGAACCAAGATCAAAGATGAGT
12053662 G
65 G
* * * ** * * * * * *
12053663 ACTGGGACTAAACTGCAAGTAAAAAAAATGAATGATCTAGACTGAACCAAGATCGAAGATAAGTG
1 ACTGAGATTGAACCACAAGTAAGAAAAATAAATAATCTGGACTGAACCAAGATCAAAGATGAGTG
* * * * * * * *
12053728 ACCCG-GACTAAATCACAAGTTAGGAAAATGAATAATTTGGACT-AAGCCAAGATCAAAGATGAG
1 A-CTGAGATTGAACCACAAGTAAGAAAAATAAATAATCTGGACTGAA-CCAAGATCAAAGATGAG
12053791 TG
64 TG
* **
12053793 -CTGAGATTGAACCACAAGTAAGAAAAATAAATAATCTGGATTGAACCAAGATTGAAGATGAGTG
1 ACTGAGATTGAACCACAAGTAAGAAAAATAAATAATCTGGACTGAACCAAGATCAAAGATGAGTG
* * *
12053857 ATTGGGATTGAACCGCAAGTAA-AAAAA-AAATAA
1 ACTGAGATTGAACCACAAGTAAGAAAAATAAATAA
12053890 AATGACCTAA
Statistics
Matches: 179, Mismatches: 41, Indels: 15
0.76 0.17 0.06
Matches are distributed among these distances:
63 8 0.04
64 95 0.53
65 74 0.41
66 2 0.01
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.20
Consensus pattern (65 bp):
ACTGAGATTGAACCACAAGTAAGAAAAATAAATAATCTGGACTGAACCAAGATCAAAGATGAGTG
Found at i:12064417 original size:3 final size:3
Alignment explanation
Indices: 12064411--12064445 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
12064401 TAGTAGTAGC
* *
12064411 AAT AAT AAT AAT AAT AAT AAT AGT AAT AGT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
12064446 ATAAAAGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:12064495 original size:26 final size:24
Alignment explanation
Indices: 12064435--12064496 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 24
12064425 TAATAATAGT
*
12064435 AATAGTAATAAATAAAAGAAAAAAAA
1 AATAG-AA-AAATAAAACAAAAAAAA
* *
12064461 TATAAAAAAATCAAAACAAAAAATAA
1 AATAGAAAAAT-AAAACAAAAAA-AA
12064487 AATAGAAAAA
1 AATAGAAAAA
12064497 AGAAAAGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
24 4 0.14
25 12 0.41
26 13 0.45
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (24 bp):
AATAGAAAAATAAAACAAAAAAAA
Found at i:12064502 original size:26 final size:25
Alignment explanation
Indices: 12064444--12064497 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
12064434 TAATAGTAAT
* *
12064444 AAAT-AAAAGAAAAAAAATATAAAA
1 AAATCAAAACAAAAAAAAAATAAAA
12064468 AAATCAAAACAAAAAATAAAATAGAAA
1 AAATCAAAACAAAAAA-AAAATA-AAA
12064495 AAA
1 AAA
12064498 GAAAAGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 4 0.16
25 10 0.40
26 5 0.20
27 6 0.24
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.11
Consensus pattern (25 bp):
AAATCAAAACAAAAAAAAAATAAAA
Found at i:12064811 original size:22 final size:22
Alignment explanation
Indices: 12064776--12064828 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
12064766 AGTTTTCTAG
*
12064776 AAAAAAGACCTAGAAACCCA-A
1 AAAAAAAACCTAGAAACCCAGA
*
12064797 AAAAGAAAACCTAGAAATCCAGA
1 AAAA-AAAACCTAGAAACCCAGA
12064820 AAAAAAAAC
1 AAAAAAAAC
12064829 ATTTTTTAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 4 0.14
22 19 0.68
23 5 0.18
ACGTcount: A:0.66, C:0.19, G:0.09, T:0.06
Consensus pattern (22 bp):
AAAAAAAACCTAGAAACCCAGA
Found at i:12065475 original size:31 final size:31
Alignment explanation
Indices: 12065403--12065478 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
12065393 TTTAAAAGCC
12065403 TGAAACCCAAGATTTGATTACAGACCTTAGA
1 TGAAACCCAAGATTTGATTACAGACCTTAGA
* * *
12065434 T-ATAACCCAAGATTTGATTATAGGCCTTGGA
1 TGA-AACCCAAGATTTGATTACAGACCTTAGA
*
12065465 TGAAATCCAAGATT
1 TGAAACCCAAGATT
12065479 CAATTACAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 1 0.03
31 37 0.95
32 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (31 bp):
TGAAACCCAAGATTTGATTACAGACCTTAGA
Found at i:12070371 original size:26 final size:26
Alignment explanation
Indices: 12070342--12070420 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
12070332 GTTGACTTAG
*
12070342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGTAGTTCATTCCCAGTCTAA
*
12070368 GCATACGTAGTTCATTCCTAGTCTAA
1 GCATACGTAGTTCATTCCCAGTCTAA
*
12070394 GCATACGTAGTTTATTCCCAGTCTAA
1 GCATACGTAGTTCATTCCCAGTCTAA
12070420 G
1 G
12070421 ATCGAACCGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACGTAGTTCATTCCCAGTCTAA
Found at i:12071312 original size:26 final size:26
Alignment explanation
Indices: 12071273--12071323 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
12071263 TTGACTTAGG
12071273 CATACGGAGGTCATTCCCAATCTAAA
1 CATACGGAGGTCATTCCCAATCTAAA
* * * *
12071299 CATATGGAGTTCATTCTCAGTCTAA
1 CATACGGAGGTCATTCCCAATCTAA
12071324 GATTGGACTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGGTCATTCCCAATCTAAA
Found at i:12072193 original size:26 final size:26
Alignment explanation
Indices: 12072157--12072209 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12072147 GTTGACTTAG
12072157 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
12072183 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
12072209 G
1 G
12072210 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:12073094 original size:26 final size:26
Alignment explanation
Indices: 12073058--12073110 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12073048 GTTGACATAG
12073058 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12073084 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12073110 G
1 G
12073111 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12073378 original size:902 final size:903
Alignment explanation
Indices: 12068809--12078313 Score: 11919
Period size: 902 Copynumber: 10.6 Consensus size: 903
12068799 GGTTTTCAAT
* *
12068809 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGTCATTAAAGTGTCTGAAATGGGGAC
1 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
12068874 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATGTTTTTTGTGCAT
66 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCAT
* *
12068938 GCCAAAAAAAATTCAAGGATCACGTCTACCCAGTAACTTGGGGCCAAAACTCCTTCCGAAAAAAT
130 GCCAAAAAAAATACAAGGATCACGTCTACCAAGT---TTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
12069003 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGG
192 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
12069068 CATGAAGCTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
257 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
12069133 TGCACGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCATATCGATCCACGACTTACGCA
322 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
12069198 TCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCAGCCCGCTTGTTTCGTCGGTTGGCTT
387 TCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-TCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
12069263 AGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGA-TCGAGGGTTGTGACAGTAAGATCG
451 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCG
** * * * * * *
12069327 GTAGCACGCAAAGGTGGACCCGACCGATCCTCGACTTACGCATTCCGCCCCTCTGGTCGGCTGAA
515 ACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-AA
* * * **
12069392 -TGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATAC
579 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * ** * * *
12069456 GGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGCGGCAGCACATGCTGTGCTCAGG
644 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
*
12069521 CATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACTGTCGTCGGAGCGTCGTCGGAGCATCGCC
709 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA----C--C--A---TCGTCGGAGCATCGCC
* * * * * * *
12069586 GGAGAACCTAACCGACGACATTGGGGTTCTGGCTATCGGGGGGG--ATGGGGGGTGTACACAGAT
763 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCA-GGGGGGTGTGCGCACAT
* * * *
12069649 GATGTGCGATGGGTGCTAGTACTTGACCTTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGA
827 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
12069714 ACTCACACCCCC
892 ACTCACACCCCC
* * * *
12069726 TTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGTCATTAAAGTGTCTGAAATAGGGAC
1 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
12069791 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGATTTTTTTTGTGCATG
66 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
12069856 CCAAAAAAAAATTCAAGGATCATGTCTACCCAA-TAACTTGGGGCCAAAACTCCTTCCGAAAAAA
131 CC-AAAAAAAATACAAGGATCACGTCTA-CCAAGT---TTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
12069920 TTTAAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
191 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
12069985 GCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
256 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * ** * **
12070050 TGGCATGCAGAAATATAAAGACGCACCGAAACAGACCTACCACCCTATCGATCCACGGCTTGCGC
321 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
12070115 ATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCCACCCGCTCGTTTCGTCGGTTGGCT
386 ATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCTCCCGCTCGTTTCGTCGGTTGGCT
* * * ** * *
12070180 TAGGCATATGGAGTTCATTCCCATTCTAAGATCGGACCAGACCAAGTGTTGCGGCAACAGGATCG
450 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
* * * * * * * * * *
12070245 GCAGCACGCAGAGGAGGACCCGGCCGATCGCAGGCTTGTGCATCCCG-CCTTACTGGCTGACTAA
515 ACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTAA
* * * * *
12070309 GCGCCTGCATGTTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
579 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
12070374 GTAGTTCATTCCTAGTCTAAGCATACGTAGTTTATTCCCAGTCTAAGATCGAACC-GAGCCGAGG
644 G--G---------AG--T-----T-C-------ATTCCCAGTCTAAGATCGAACCGGA-CCGAGG
* ** ** *
12070438 GTTGCGGCAGCACATGCTGGGCTTGACCATGTGCTGGTGCTACATTTTTCTTCGCCGGGGCACCA
682 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA
* * * * * * *
12070503 TCGCCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGCGTTCCGACGACCGGGGGGGCTAGG
747 TCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCA-G
* * *
12070568 GGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCGC
811 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
12070633 TCATCAAACCTCCAGAACTCACACCCCC
876 TCATCAAACCTCGAGAACTCACACCCCC
*
12070661 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
1 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
12070726 ACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTGTGCATG
66 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* **
12070791 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATAATTCCGAAAAAATTTTA
131 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
** * *
12070856 AAAAATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATG
196 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * * * *
12070921 AAACTTCATGTGAAGGCTTGAGGAACCATTATATGAATTTACAAGCCATAAAAATAGCGTTGGCA
261 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
12070986 CGCA-AAAGTATGAAGCTGTG-CTAAACCCACCTACCACCCTATCGATCCATGACTTCCGCATCC
326 CGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** * * *
12071049 CGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCTCCTACCCGTTCGTTTCGTCGGTTCGCTTAGG
390 TGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCT-CCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
12071114 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGCGTTGCGGTAGCAGGATCGACAG
454 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAG
* * ** * * * * * * *
12071179 CACACAAACGGGGACCCGGTCGATCCCCAGCTTGTGCATCCCACCCCTTTGGTCGGCTGAGCACC
519 CACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCC
** * * * *
12071244 CGCAAACTCGTTTCGTGGGTTGACTTAGGCATACGGAGGTCATTCCCAATCTAAACATATGGAGT
584 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * ** *
12071309 TCATTCTCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGT
649 TCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * *
12071374 ACTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGT-----CA------GAGAACCTGACCGGC
714 GCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
* * *
12071428 GGCATTGGGGTTCCGGCGATCGAGGGGG-CTGGGTGGGTGTGTGCACATGATGTGCGATGGGTGC
779 GGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGG-GGGTGTGCGCACATGATGTGCGATGGGTGC
* *
12071492 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACGCCC
843 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
12071553 TTAAAGAGCATTTGAGTTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
1 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
12071618 ACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTATGCATG
66 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * * *
12071683 CCAACAAAAATACTAGGATCATGTCCACCAAATTTGGGGCCAAAACTCCATCCAAAAAAATTTTA
131 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
12071748 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATG
196 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
12071813 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
261 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** ** * * * * *
12071878 CATAGAAATATGAAGATGTGAATAAACCCACCTATCACCTTATCTATCCACGGCTTGCGTATCCC
326 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
** *
12071943 AACTCTCTGGCCGGTGTAGT----GCCCGCCCG--T-CCGCTCGTTTCGTCGGTTGGCTTAGGCA
391 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * *
12072001 TATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTAAGGGTTACGGTAGCAGGATTGGCAGCA
456 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCA
* * ** * *
12072066 TGCAGAGGGGGACCCGATTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCA
521 CGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCG
*
12072131 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTC
586 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * * *
12072196 ATTCCCAGTCTAAGATCGGATCGGACCAAAGGTTGCGGCAGTACGTGCTAGGCTCGGGCATGTGC
651 ATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
12072261 TGGTGCCGCATTTTTCTTCATCGGGGCACAATTGTCGGTGCATCGTCGGAGAACCTGACCGACGG
716 TGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGG
* * * * *
12072326 CATTGGGGTTCCGACGATCGGGGGGG-CTGGGGGGTGTACGTACATGATGTGCGATGGCTGCTGG
781 CATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
12072390 TACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAACT-AGCACCCCT
846 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-CACCCCC
* *
12072448 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGACTGAAATGGGGAA
1 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
12072513 ACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATA
66 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
12072578 CCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCGTCCGAAAAATTTTT
131 CC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
12072643 AAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTTTTGCCAT
195 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
12072708 GAAACTAT-ACATAAAGGCTTAAAGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGG
260 GAAACT-TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
12072772 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTACGCA-C
324 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
12072836 CAGTCTCTCTGGTCGGCGTAGTGTCCACCCGCCCGTCTCTCGCTCGTTTCGTCAGTTGGCTTAGG
389 CTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGCTCGTTTCGTCGGTTGGCTTAGG
** ** ** * *
12072901 CATACATAGTTCATTCCCAGTCTAAGATTGGACTGGA-TCGAGGGTTGCGACAGCAGGATCGGCA
454 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGACA
* ** * * * *
12072965 GCACGCAAAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGG-CAGCTGAGTGC
518 GCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGC
* * *
12073029 CCGCACGCTTGTTTCGCGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
583 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* ** * *
12073094 TTCATTCTCAGTCTAAGATCGAACCGGATTGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATG
648 TTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
12073159 TGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGTCGGACCATCGCCGGAGAACCTGACCGG
713 TGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA
* * *
12073224 CGGCATTGGGGTTCCTGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTACGATGGGTTC
778 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
12073289 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCATACCCCC
843 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * **
12073350 TCAAAAAGCATTTGAGATTTTCCAGGTTTGCTGCCAGTAATCATTAAAGTGTCTGAAATGGGGAC
1 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
12073415 ACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCATG
66 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
12073480 CCAACAAAAATACTAGGATCATGTCCACC----TTGGGGCCAAAACTCCATCCAAAAAAATTTTA
131 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
12073541 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATG
196 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
12073606 AAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
261 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
12073671 AGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTA-CTGATCCATGGTTTGCGCATCC
326 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-GATCCACGGCTTGCGCATCC
* * * **
12073735 TGTCTCTCTGGCCGGCATAGTGCCCACCTGCCCG---CCCGCTCGTTTTATCGGTTGGCTTAGGC
390 TGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
12073797 ATACAGAGCTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGCAGGATCGACAGC
455 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * *
12073862 ACGCAAAGGGGGACCCGATCGATCCCCGACTTACGGATCCCGCCCCTCTAGCCGACTAAGCGCCC
520 ACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCC
* * *
12073927 GCACGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
585 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * * *
12073992 CATTCTCAGTCTAAGATCGGAA-TAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATTT
650 CATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
** *
12074056 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G--T---CGGAGAACCTGACCGGC
714 GCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
* * ** * * * *
12074110 GGCATTGGGGTTTCGGTGATCGGAAGGGACGGGGGGTGTGTGCCCACATGATGAGCGATGGGTGC
779 GGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGG-GTGTGCGCACATGATGTGCGATGGGTGC
*
12074175 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
843 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
12074236 TTAAAGAGCATATGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGCGGAC
1 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
12074301 ACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
66 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* ** * *
12074366 CCAAAAAAAATACAAGCG-TCACATCTACCAAAACTTGGGGCAAAAAATCCTTCCGAAAAAATTT
131 CCAAAAAAAATACAAG-GATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
12074430 AAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
194 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
12074495 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGG
259 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
12074560 CACGCAAAAATATAAAGATGTACCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATC
324 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
12074625 CTGTCTTTCTCGTCGACGTAGTGCCC-CCCGCCCG--T-CCGCTTGTTTCGTCGGTTGACCTAGG
389 CTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGCTCGTTTCGTCGGTTGGCTTAGG
12074686 CATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGCGGCAGCAGGATCGACA
454 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGACA
** * * ** ** * * *
12074750 GCACATAGAGGGGGAGCCGGTCGATCCATGGCTTGCACATCCCGCCCCACTGGCCGGCTGAGCGC
518 GCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGC
* * * *
12074815 CCGCACGTTCGTTTCATGGGTTGACTTAGGCATACAGAGTTGATTCCCAGTCTAAGCATACGGAG
583 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
12074880 TTCATTCCCAGTCTAAGAT-TAGACCGGATCAAGGGTTGCGACAGCACGTGCTGGGCTCGGGCTT
648 TTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* ** *
12074944 GTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCGTC-G-G--T-------GAACCTGACCA
712 GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
* * * *
12074998 ACGACATTGGGGTTCCGGCAATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
777 ACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* **
12075063 CTGATACTTGGCCCTTATATTGGCCCTGTATCCCTCATCAAACCTCGAGAACTCACACCCCC
842 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
12075125 TTAAAGAGCATTTTAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
1 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
12075190 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
66 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *** * * * *
12075255 CCAAAAAAAATACAAGGATCCCAAGTACCATGTTTGGGGCTAAAACACCTTCCGAAAATATTTTA
131 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * *
12075320 AAAAATCCTGAACCGTAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
196 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
12075384 AAACTTCACGTGAAGGCTTCAGGGACCATTGCATGAATTTACAAGCCTTAAAAATGGCATTGGCA
261 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
12075449 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGTATCCC
326 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
* *
12075514 ATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCC-CGTCCGCTCGTTTCGTCGGTTGGCTTAGG
391 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTC--CCGCTCGTTTCGTCGGTTGGCTTAGG
* * * ** * *
12075578 CATACGGAGTTCATTCCTAGTCTAAGATCAGATCAAACCAAGGGTTGTGGCAGCAGGATCGATAG
454 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * * * *
12075643 TATGCAGAGGGGGACCCGACCAATCCCCGGCTTGTGCATCCTGCCCCTTTAGCCGGTTAAGCGCC
519 CACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCC
*
12075708 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGT
584 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * ** *
12075773 TCATTCCCAGTCTAAGATC-AGACAGGAACAAGAGTTGCACCAGCACATGCTGCGCTCGGGCATG
649 TCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
12075837 TGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGTAGCATCACCGGAGAACCTGACCGA
713 TGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA
* * * *
12075902 CGGTACTGAGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
778 CGGCATTGGGGTTCCGGCGATCGGGGGGGCC-AGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
12075967 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCATAACCCC
842 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
12076029 TTTAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGAC
1 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
12076094 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGAA-TTTTTTGTGCATG
66 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
12076158 CCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCGTTCC-AAAAAAGTTT-
131 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
12076221 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
196 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * **
12076286 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACATGAAATAAAAATGGCATTGGCA
261 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
12076351 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATTGATCCACGGCTTGCGCATCCT
326 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
* * * *
12076416 GTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGT
391 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCTCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * *
12076481 ATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACTGAAGGTTGCGGCAGCAAGATC-AGCA
455 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGCAGGATCGA-CA
* * * * *
12076544 GCACGCAGAGGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
518 GCACGCA-AAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCG
** * *
12076609 CCCGCGTGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGA
582 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
12076674 GTTCATTCCCAGAT-GAAGATC-AGACTGGGCTGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
647 GTTCATTCCCAG-TCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * * * *
12076737 ATGTGTTGGTGTCACATTTTTCTTCGCTGAGGCACCATCGCCGGAGCATCGCCGGAGAACTTGAC
710 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * ****
12076802 CGGCGGCATTGGGGTTCTGGCGATCGGGGGTTTGAGGGGGGTGTGCGCACATGATGTGCGATGGG
775 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
12076867 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCGC
840 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
** *
12076931 TTAATTAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGAC
1 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
12076996 ACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAG
66 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
12077061 CTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAATTTTA
131 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * ** * *
12077125 AAAAATCACAAACCACAAAAAGTTTCAAAAATCGTGAAATATAGAAAACGAGTCATCTTGCCATG
196 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
12077190 AAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCA
261 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
12077255 TGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCAACAGCTTGCGCATCCC
326 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
* * *
12077320 GTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTTGCTTAGGC
391 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCT-CCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
12077385 ATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGACAAC
455 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * * * * *
12077450 ACACAGAGGGGGACCCAACCGATCCCCGACTTACGTATCCCACCCCTCTAGTCGGCTAAGCGCCC
520 ACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCC
*
12077515 ACACGCTCGTTTCGTGGGTTGAC-----C-TA--G-G--------CA---T-A-C--A--GAGTT
585 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
12077554 CATTCCCAGCCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTG
650 CATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * ** * * * * * *
12077619 CTGGTGTCGCATTTTTCTTCACCGAGGCACTATCACCGAAGCATCACCGGAAAACTTGATCGGCG
715 CTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG
* * * * * * *
12077684 GCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGGTGTCCGAACATAATGTGTGATGGGTGCTG
780 GCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
12077749 GTACTTGGCCCTCATATCGGCCCCCTATCCCTCATCAAACC-CGAGAACTCACACCCCC
845 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
12077807 TTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
1 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
12077872 ATTTTTTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTATCTGAATTTTTTTGTGCATG
66 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* ** * * * *
12077937 CCAACAAAAATACAAACATCACGTTTTCCAAGTTTGGGGCCAAAACTCCTT-CAAAAAAAGTTTA
131 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * * *
12078001 AAAAATCTCGAACCGTAAAAAGTTTCCAAATTCGTGAAATATAGAAAATGAGTCGTCTTGCCATT
196 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
12078066 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
261 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * *
12078131 CATAGAAATATGAAGATGTGCCGAAACCCACCTACCACGC-ATCGATACACGGCTTGCGCATCCT
326 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
* * * * * * *
12078195 ATCTCTCAGGCCGGCGTAGTGCCCTCCCGCCCACCCGCCCGCTCATTTCGTTGGTTGGCTTAGGC
391 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * *
12078260 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGCAGCA
455 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
12078314 CATGCTGGGC
Statistics
Matches: 7495, Mismatches: 965, Indels: 298
0.86 0.11 0.03
Matches are distributed among these distances:
875 119 0.02
876 333 0.04
877 216 0.03
879 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
885 319 0.04
886 225 0.03
887 176 0.02
888 61 0.01
889 241 0.03
890 322 0.04
891 229 0.03
892 676 0.09
893 95 0.01
894 5 0.00
895 344 0.05
896 422 0.06
897 206 0.03
898 32 0.00
899 10 0.00
901 256 0.03
902 799 0.11
903 460 0.06
904 573 0.08
905 4 0.00
911 1 0.00
912 1 0.00
917 130 0.02
918 446 0.06
919 7 0.00
920 1 0.00
928 1 0.00
929 4 0.00
930 245 0.03
931 157 0.02
933 56 0.01
934 24 0.00
935 211 0.03
936 2 0.00
937 1 0.00
938 1 0.00
940 1 0.00
943 1 0.00
944 78 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCA
CGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGG
CATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
Found at i:12073984 original size:26 final size:26
Alignment explanation
Indices: 12073954--12074006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12073944 GTTGACTTAG
12073954 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
* *
12073980 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
12074006 G
1 G
12074007 ATCGGAATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:12074880 original size:26 final size:26
Alignment explanation
Indices: 12074844--12074896 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12074834 GTTGACTTAG
*
12074844 GCATACAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12074870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12074896 G
1 G
12074897 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12075772 original size:26 final size:26
Alignment explanation
Indices: 12075736--12075788 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12075726 GTTGACTTAG
12075736 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12075762 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12075788 G
1 G
12075789 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12079168 original size:26 final size:26
Alignment explanation
Indices: 12079132--12079184 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12079122 GTTGACTTAG
*
12079132 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12079158 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12079184 G
1 G
12079185 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12080392 original size:876 final size:884
Alignment explanation
Indices: 12078258--12081859 Score: 4678
Period size: 876 Copynumber: 4.0 Consensus size: 884
12078248 GTTGGCTTAG
** * *
12078258 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
12078323 CTCGGGCATGTGCTGGTGCCGTATTTTTCTGT-GTCGGGGCACCATCGCCGGAGCATCGCCGAAG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCT-TCATCGGGGCACCAT-----GAGCATCG--G-AG
* * * *
12078387 AACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGAGGGCCGGGGGGGGTGAGCGTACATGATG
122 AACCTGACCGACGACATTGGGGTTCCAGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
* *
12078452 TGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTC
185 TGCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
12078517 ACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CTGCAGCCATTAAAGTGTCCGAA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
12078581 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTT
315 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
12078646 TGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACACGTTTCGAAA
380 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
12078711 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
445 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
12078776 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
12078841 CATTGGCATGCAGAAATGTGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
575 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTG
* * *
12078906 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTAGCTT
640 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTT
** * *
12078971 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTAGCAGCAGGATCAG
705 AGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG--GCAG-A-GA-C--
* * * * * *
12079036 TAGCACGTAGAGGGGGACCCGA-CTGATCCCCGGCTTGCGCATCCCGCCCCTCAGGCCAGTTGAA
763 -AGCACATAGAGGGGGACTCGATCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
12079100 CGCTTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
827 CGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
12079158 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * *
12079223 CTCAGGCATGTGCTGGTGCCACATTTTTTTTCGTCGAGGCACCATTGCCGGAGCATCATCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA-T----GAG---CATCGGAGA
* *
12079288 ACCTGACCGACGGCATTGGGGTTCC-GACGATCAGGGGGGCCGGAGGGG-GTGCGCACATGATGT
123 ACCTGACCGACGACATTGGGGTTCCAG-CGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGT
* * *
12079351 GCAATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
186 GCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12079416 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
251 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12079481 CGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
316 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
12079546 ATGCATGCCAACAAAAATACAAGGATCATGTGTACCAAGTTTGGGGCCAAAACGCCTTTCAAAAA
381 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
12079611 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCT
446 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
*
12079676 TGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-TATGAATTTACAAGCCATAAAAATGGC
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12079740 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCATGGCTTGC
576 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGC
* * * * ** *
12079805 ACATCCCGTCTCTCTGCCCGGCGTAGAGCATGCCCGCCCATCCG-TACGTTTCGTCGGTTGGCTT
641 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCT-CGTTTCGTCGGTTGGCTT
* ** *
12079869 AGGCATGCGCAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-GC-G-G-CAGCACAT
705 AGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGGCAGAGACAGCACAT
* *
12079930 AGAGGGGAACTCGATC-GATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCA
770 AGAGGGGGACTCGATCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCA
* *
12079994 CGTTCATTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
835 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12080044 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGGGTCGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * *
12080109 CTCGGGCATGTGCTGGTACTGCATTTTTCTTCATTGGGGCACCAT-AGC-T-GGAGAACCTGACC
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATGAGCATCGGAGAACCTGACC
* * * *
12080171 GGCGACATTGGGGTTCC-GACGACCGGGGGGGGCGAGGGGGTGTGCGCACATGATGTGCAATGGG
131 GACGACATTGGGGTTCCAG-CGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCAATGAG
**
12080235 TGCTGGTACTTGGCATTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * **
12080300 TAAAGAGCACTTGAGATTTTACAGGTTTGTTGCCAGTAGTTATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
12080365 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTTGTACATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
* * *
12080430 CAATAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
12080495 AAAATCCCAAACCGTAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
454 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
*
12080560 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * *
12080625 ATAGAAATATGAAGATGCGCCTAAACTC-ACGTACCACCCTATCCATCCACGGCTTGCGCATCCC
584 ACAGAAATATGAAGATGTGCCTAAACCCAAC-TACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * **
12080689 GCCTCTCTGGCCGACGTAGTGTCCGCCCGACCACCCGCTCGTTTTATCGGTTGGCTTAGGCATAC
648 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
12080754 AAAGTTCATTCCCAGTCTAAGA-CCGAACCGGATCGAGAGTTGCGGCAGCAGGATCGCCAGCACA
713 AAAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTT--GGCAG-A-GA----CAGCACA
* * *
12080818 TAGAGGGGGACTCGATC-GATCCCCGACTTGCGCATCACGCCCCTCTGGCCGGCTGAGCGCCCGC
769 TAGAGGGGGACTCGATCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGC
* *
12080882 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
12080933 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------CAGACC-GA-
* * *
12080998 CGAAGG-TGATGGCAGCACATGCTGGGCTCAGGCATGTGCTGTTGTCGCATTTTTCTTCACCGGG
43 -G--GGTTG-TGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* * *
12081062 GTAGCAT-AGC-T-GGAGAACCTGACCGACGACATTAGGGTTCCAGCGATCGGGGGGGCCGGGGG
104 GCACCATGAGCATCGGAGAACCTGACCGACGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGGG
* * *
12081124 GTGTTCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCAT
169 GTGTGCGCACATGATGTGCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
12081189 CAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGT
234 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
12081254 CATTAAAGTGTCTGGAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACAGTTCGAGTT
299 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *** * * *
12081319 TTTAGCTGAATTGTTTTATGCACAACAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGACA
364 TTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * ** *
12081384 AAAACTCCTCCCGAAAAAACTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
429 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
**
12081449 TAGAAAACGAGTCATCTTGCCATGAAGTTTCACGTGAAGGCTTAAAGGGACCATTGTATGAATTT
494 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTT
* *
12081514 ACAAGCCATAAAAATGGCATTGGCACACAGAAATACGAAGATGTGCCTAAACCCACCTACCACCC
558 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAACTACCACCC
* * *
12081579 TATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGCCGTAGTGCCCGCCCGCCTGCCCGCCC
623 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCACCC
12081644 GCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
684 GCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* *** * * * * *
12081709 GGGTTACGGTAGTAGGATCGACAGCACGCGGAGGGGCAC-CCAGCTGATCCCCGGCTTGCGTATA
749 GGGTT---G--GCA-GA--GACAGCACATAGAGGGGGACTCGATCTGATCCCCGGCTTGCGCATC
* *
12081773 CCGCCCCTCTGGTCGGCTGAGCGCTTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
806 CCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
*
12081838 CATTCCCAGTCCAA
871 CATTCCCAGTCTAA
12081852 GCATACGG
1 GCATACGG
12081860 GCATACAAAG
Statistics
Matches: 2394, Mismatches: 239, Indels: 119
0.87 0.09 0.04
Matches are distributed among these distances:
875 46 0.02
876 355 0.15
877 174 0.07
878 1 0.00
880 4 0.00
881 1 0.00
884 1 0.00
885 1 0.00
886 202 0.08
887 1 0.00
889 140 0.06
890 2 0.00
891 2 0.00
893 2 0.00
894 1 0.00
895 2 0.00
897 1 0.00
898 296 0.12
899 242 0.10
900 147 0.06
901 2 0.00
902 1 0.00
903 5 0.00
904 1 0.00
910 4 0.00
911 2 0.00
913 1 0.00
914 339 0.14
915 223 0.09
916 2 0.00
917 1 0.00
918 5 0.00
919 178 0.07
920 3 0.00
922 3 0.00
923 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATGAGCATCGGAGAACCTGACC
GACGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGAGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
AGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAA
GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGGCAGAGACAGCACATAGAGGGGGACT
CGATCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCATTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12080937 original size:26 final size:26
Alignment explanation
Indices: 12080907--12080985 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
12080897 GTTGACTTAG
12080907 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12080933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12080959 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12080985 G
1 G
12080986 ATCAGACCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12081374 original size:914 final size:918
Alignment explanation
Indices: 12080022--12081859 Score: 2784
Period size: 914 Copynumber: 2.0 Consensus size: 918
12080012 ACTTAGGCAA
* *
12080022 ACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAG
1 ACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAA
* **
12080087 GGTCGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTACTGCATTTTTCTTCATTGGGGCACC
66 GGTCGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTACTGCATTTTTCTTCACCGGGGCACC
* * *
12080152 ATAGCTGGAGAACCTGACCGGCGACATTGGGGTTCCGACGACCGGGGGGGGCGAGGGGGTGTGCG
131 ATAGCTGGAGAACCTGACCGACGACATTAGGGTTCCGACGACCGGGGGGGCCGAGGGGGTGTGCG
* * *
12080217 CACATGATGTGCAATGGGTGCTGGTACTTGGCATTTATATTGGCCCCCTATCCCTCATCAAACCT
196 CACATGATGTGCAATGAGTGCTGGTACTTGGCACTTATATTGGCCACCTATCCCTCATCAAACCT
* * *
12080282 CGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGTTGCCAGTAGTTATTAAA
261 CGAGAACTCACACCCCCTTAAAAAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAA
*
12080347 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCT
326 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * * *
12080412 GAATTTTTTTGTACATGCCAATAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
391 GAATTTTTTTGCACA-GACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACAAAAACTC
* * *
12080477 CTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAATTCATGAAAAATAGAAAA
455 CTCCCGAAAAAACTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
12080542 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCC
520 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGGACCATTGTATGAATTTACAAGCC
* * * * *
12080606 ATAAAATTGGCATTGGCACATAGAAATATGAAGATGCGCCTAAACTCACGTACCACCCTATCCAT
585 ATAAAAATGGCATTGGCACACAGAAATACGAAGATGCGCCTAAACCCACCTACCACCCTATCCAT
*
12080671 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGTCCG-C-CC-GACCACCCGCTCGTTT
650 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCGCCTGACCACCCGCTCGTTT
* * *
12080733 TATCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGACC-GAACCGGATCGAGAGTTGC
715 CATCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGACCAG-ACCGGACCGAGAGTTAC
* * * * *
12080797 GGCAGCAGGATCGCCAGCACATAGAGGGGGACTC-GATCGATCCCCGACTTGCGCAT-CACGCCC
779 GGCAGCAGGATCGACAGCACACAGAGGGGCACCCAGCT-GATCCCCGACTTGCGCATAC-CGCCC
*
12080860 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
842 CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
*
12080925 CAGTCTAAGCAT
907 CAGTCCAAGCAT
*
12080937 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAA
1 ACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAA
*
12081002 GGT-GATGGCAGCACATGCTGGGCTCAGGCATGTGCTGTTGT-C-GCATTTTTCTTCACCGGGGT
66 GGTCG-TGGCAGCACATGCTGGGCTCAGGCATGTGCTG--GTACTGCATTTTTCTTCACCGGGGC
* *
12081064 AGCATAGCTGGAGAACCTGACCGACGACATTAGGGTTCC-AGCGATCGGGGGGGCCG-GGGGGTG
128 ACCATAGCTGGAGAACCTGACCGACGACATTAGGGTTCCGA-CGACCGGGGGGGCCGAGGGGGTG
* * *
12081127 TTCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAA
192 TGCGCACATGATGTGCAATGAGTGCTGGTACTTGGCACTTATATTGGCCACCTATCCCTCATCAA
* *
12081192 ACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCAT
257 ACCTCGAGAACTCACACCCCCTTAAAAAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGTCAT
* * *
12081257 TAAAGTGTCTGGAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTT
322 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
12081322 AGCTGAATTGTTTTATGCACA-ACAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGACAAA
387 AGCTGAATT-TTTT-TGCACAGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACAAA
**
12081386 AACTCCTCCCGAAAAAACTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
450 AACTCCTCCCGAAAAAACTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
**
12081451 GAAAACGAGTCATCTTGCCATGAAGTTTCACGTGAAGGCTTAAAGGGACCATTGTATGAATTTAC
515 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGGACCATTGTATGAATTTAC
*
12081516 AAGCCATAAAAATGGCATTGGCACACAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTA
580 AAGCCATAAAAATGGCATTGGCACACAGAAATACGAAGATGCGCCTAAACCCACCTACCACCCTA
* * * * * *
12081581 TCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGCCGTAGTGCCCGCCCGCCTGCCCGCCCGC
645 TCCATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG-CCGCCTGACCACCCGC
* * *
12081646 TCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
709 TCGTTTCATCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGA
* * * * * *
12081711 GTTACGGTAGTAGGATCGACAGCACGCGGAGGGGCACCCAGCTGATCCCCGGCTTGCGTATACCG
774 GTTACGGCAGCAGGATCGACAGCACACAGAGGGGCACCCAGCTGATCCCCGACTTGCGCATACCG
* ** *
12081776 CCCCTCTGGTCGGCTGAGCGCTTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
839 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
12081841 TCCCAGTCCAAGCAT
904 TCCCAGTCCAAGCAT
12081856 ACGG
1 ACGG
12081860 GCATACAAAG
Statistics
Matches: 831, Mismatches: 78, Indels: 24
0.89 0.08 0.03
Matches are distributed among these distances:
914 333 0.40
915 291 0.35
916 6 0.01
917 3 0.00
918 2 0.00
919 192 0.23
920 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (918 bp):
ACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAA
GGTCGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTACTGCATTTTTCTTCACCGGGGCACC
ATAGCTGGAGAACCTGACCGACGACATTAGGGTTCCGACGACCGGGGGGGCCGAGGGGGTGTGCG
CACATGATGTGCAATGAGTGCTGGTACTTGGCACTTATATTGGCCACCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAAAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGCACAGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACAAAAACTCC
TCCCGAAAAAACTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACACAGAAATACGAAGATGCGCCTAAACCCACCTACCACCCTATCCATC
CACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCGCCTGACCACCCGCTCGTTTC
ATCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGAGTTACGG
CAGCAGGATCGACAGCACACAGAGGGGCACCCAGCTGATCCCCGACTTGCGCATACCGCCCCTCT
GGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CCAAGCAT
Found at i:12082649 original size:26 final size:26
Alignment explanation
Indices: 12082613--12082665 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12082603 GTTGACTTAG
12082613 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12082639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12082665 G
1 G
12082666 ATCAGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12084375 original size:865 final size:873
Alignment explanation
Indices: 12081917--12086085 Score: 4620
Period size: 904 Copynumber: 4.8 Consensus size: 873
12081907 GAGTCGGGGT
* * ** *
12081917 GGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACATGGTGCTTATATT-ACCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
12081981 ATCAAACCTTGAGAACTCACACCCGTTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCCGTA
66 ATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
12082046 GCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTG------TCGGG
130 GCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
12082105 TTTTTAGCTGAATT-TCTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGG
195 TTTTTAGATGAATTGT-TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * * * **
12082169 GCAAAAAAT-CCTTTCAAAAAAATTTTGAAAAATCACAAACCGTAAAAAGTTTGGAAAATCATGA
259 GC-CAAAATCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGA
* * *
12082233 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGACGGCTTAAGGGACCATTGTATAAA
323 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
12082298 TTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
388 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * ** * *
12082363 CCCTATCGATCCACGGCTTGTACATCCCGTCCCTCTGGCC-AGTGTAGTGCTCGCTCGACCGCCC
453 CCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGA-CATAGTGCCCGCCCG-CCGCCC
* * * *
12082427 GCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGATCAGA
516 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * *** * *
12082492 CCGAGGGTTGTGGCAGCAGGATCGGCAGCATGTAGAGGGGGACATGGCCGATCCCCGGGTTGCGC
581 CTGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCAGCTGATCCCCGGCTTGCGC
* *
12082557 ATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
646 ATTCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
12082622 GTTCAT-TCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGGAACAAGAGTT
711 GTTCATCTCCCAGT-TAA-C--A--GA----A----CA-TC--AGATC-----GGAGCGAGGGTT
* ** * * * *
12082686 CCACCAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG
754 GCGGCAGCACATGCTGGGCTCAGACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCA
* ** * * * * * *
12082751 CCGTAGCATCACCGGAGAACCTGACCGGCAGTACTGAGGTTCCGACGATCGGGGGGGCCGGGG
819 CCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATC------G--GTGG
*
12082814 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
**
12082879 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAAAATTTGAGATTTTACAGGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
12082944 GCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAG
130 GCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * *
12083009 TTTTTAGCTGAATTTTTTTGTGCATGCCAACATAAATACAGGGATCACATCTACCAAGTTTGGGG
195 TTTTTAGATGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
12083074 CCAAAA-CTCATTCCGAAAAAATTTTAAAAAATCTTGAACTGCAAAAAGTTTTAAAAATCGTGAA
260 CCAAAATC-CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAA
*
12083138 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAAT
324 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
12083203 TTATAAGCCATAAAAATGGCATTGGCACATAGAAATACGAAGATGTGCCTAAACCCACCTACCAC
389 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
12083268 CCTATCGATCCAGGGCTTGCACATCCCGTCTCTCTGGCC-AGCATGGTGCCCGCCCGCGTGCTCG
454 CCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGA-CATAGTGCCCGCCCGC-CGCCCG
* * *
12083332 CCAGCTCATTTCGTCGGTTGGCTTAGGCAGACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
517 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
** ** * * * * * ** *
12083397 TGAGGGTTGTAGCATAAGGACTGGTAGCATGTAGAGGGGGACCC-GGTCGGTCCCCGATTTGGGC
582 TGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCAGCT-GATCCCCGGCTTGCGC
* ** *
12083461 A-TCCTGCCCCTCTGGCCGACTGAATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
646 ATTCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
12083525 AGTTCAT-TCCCAG-T-A-A-AA-ATCAGATTGGAGCGAGGGTTGCGGCAGCACATGCTGGGCTC
710 AGTTCATCTCCCAGTTAACAGAACATCAGATCGGAGCGAGGGTTGCGGCAGCACATGCTGGGCTC
*
12083584 AGACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACC
775 AGACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACC
* * *
12083649 TGACCGGTGGCAGTGGGGTTCTGGCGATCGGT-G
840 TGACCGGCGGCATTGGGGTTCTGACGATCGGTGG
* *
12083682 GGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
12083747 ATCAAACCTCGAGAACTCACACCCCTTAAAGAGCGTTTGAAATTTTACAGGTTTGCTGCCAGTAG
66 ATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
12083812 CCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAAGGGTCACGAAATCTTGTACACTTCAACT
131 CCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
12083877 TTTTCA-ATGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGG
196 TTTT-AGATGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
12083941 CCAAAATCCCTTCCGAAAAAATTTTAAAAAATCTCTAACCACAAAAA-TTTTGAAAATCATGAAA
260 CCAAAATCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAA
*
12084005 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA-GCTTAAGCGACCATTGTATGAATT
325 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
12084069 TACAAGCCGTAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
390 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
** * * *
12084134 CTATCGATCCACAACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGACCGCCCACC
455 CTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCG-CCGCCCGCC
* ** *
12084199 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACTG
519 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * *
12084264 AGGGATGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCAGCTGATCCCTGGCTTGCGCATT
584 AGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCAGCTGATCCCCGGCTTGCGCATT
* ** * *
12084329 CCGCCCCTCTGGTCGGCTGAGCGGTCGCATGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTT
649 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
12084394 CAT-TCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCG
714 CATCTCCCAGT-TAA-CA----GA----A----CA-TC--AGATCGGA---G-C-GAGGGTTGCG
* * * ** * *
12084458 GCAGCACATGCTCGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCG
757 GCAGCACATGCTGGGCTCAGACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCG
* *
12084523 GAGCATCGTCGGAGAACCTGACCGGCGACATTGGAGTT-TCGACGATCGGGTGGCCAGG
822 GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GACGATC-GGT-----GG
* *
12084581 GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
12084646 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
12084711 GCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAG
130 GCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * * *
12084776 TTTTTAGTTGAATTTTTTTCTGCATGCCAACAAAAACACAGGGATCATGTCTACCAAGTTTGGGG
195 TTTTTAGATGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
12084841 CCAAAAGT-CATTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAA
260 CCAAAA-TCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAA
* * * * *
12084905 ATATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGACT
324 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
12084970 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
389 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
12085035 CCTATCGATCCACGGCTTGCACATCCCATTTCTCTGGCCGGCATAGTGCTCGCCCGCCCGCTCGC
454 CCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCG-CCGCCCGC
*
12085100 CCGCTCG-TT-GTCGGTTTGCTTAGGCATACGGAGTTCATTCCC--TCTAA-ATCAGACCAGACT
518 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
* *
12085160 GAGGGTTGCGGC-GCAGGAATTGGCAAGCACGTAGA-GGGG-CCCCGATCGATCCCCCGG-TATG
583 GAGGGTTGCGGCAGCAGG-ATTGGC-AGCACGTAGAGGGGGACCCAGCT-GAT-CCCCGGCT-TG
* * * ** *** *
12085221 CGCA-TCC-CGCTTCTGGCCGACTGAATGTATGCAACG-TCG-TTCGT-GGTTAACTTTAGGCAT
643 CGCATTCCGCCCCTCTGGCCGGCTGAGCGCCCGC-ACGCTCGTTTCGTGGGTTGAC-TTAGGCAT
* * *
12085281 ACGGAGTTCATGTCCC---T------A-ATCAGA-CGGAGTGAGGGTTG-GGTAG-ACAATGCT-
706 ACGGAGTTCATCTCCCAGTTAACAGAACATCAGATCGGAGCGAGGGTTGCGGCAGCAC-ATGCTG
* * * **
12085332 GGCTCAGACATGTGCGGGTG-CG-ATTTTTTTTAGTCGGGG-----T-A----A--ATCACCGGA
770 GGCTCAGACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGA
** * *
12085383 G-ACCTGA-TTG-GTCATTGGGGTTCTGCGATTTCCGGATGGGCTCACGGG
835 GAACCTGACCGGCGGCATTGGGGTTCT--GA----C-GATCGG-T----GG
* *
12085431 GGGTGTGCGCACATGATGTGCGAAGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
12085496 ATCAAACCTCGAGAACTCACGCCCCTTAAAGAG-AGTTCGAAATTTTACAGGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCACACCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
12085560 GCCATTAAAGTTTCTGAAATGAGGACAATTTTGTT-AAATGGTCACAAAATCTTGTACACTTCGA
130 GCCATTAAAGTTTCTGAAATGGGGACACTTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGA
12085624 GTTTTTA-ACTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
194 GTTTTTAGA-TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
12085688 GTCCAAAATCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTTAAAATCATGA
258 GGCCAAAATCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGA
* * *
12085753 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACAATTGTATGAA
323 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
**
12085818 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTGTCA
388 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
12085883 CCCTATTGATCCA---C--G--------G---CT-T-G-CG-CATAGT----G--C-CCGCCCGC
453 CCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCGCCCGC
** * *
12085921 CCGCTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCGAAGATCGGACCAGACT
518 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
* * * * * * * *
12085986 AAGGGTTGCAGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCAACAGATCCCTGGCTTACGTAT
583 GAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCAGCTGATCCCCGGCTTGCGCAT
* *
12086051 CCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTC
648 TCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
12086086 TTTTACAGGT
Statistics
Matches: 2840, Mismatches: 339, Indels: 256
0.83 0.10 0.07
Matches are distributed among these distances:
821 14 0.00
822 2 0.00
823 31 0.01
825 23 0.01
826 41 0.01
827 26 0.01
829 6 0.00
830 2 0.00
831 1 0.00
832 1 0.00
833 2 0.00
844 11 0.00
845 2 0.00
846 10 0.00
847 8 0.00
848 2 0.00
849 343 0.12
850 89 0.03
851 4 0.00
854 1 0.00
859 14 0.00
860 1 0.00
861 19 0.01
862 9 0.00
863 8 0.00
865 301 0.11
866 62 0.02
867 197 0.07
868 91 0.03
869 4 0.00
870 1 0.00
871 3 0.00
872 1 0.00
875 1 0.00
877 107 0.04
879 1 0.00
882 4 0.00
884 3 0.00
885 3 0.00
887 7 0.00
890 2 0.00
891 2 0.00
892 108 0.04
893 3 0.00
894 7 0.00
895 24 0.01
896 32 0.01
897 86 0.03
898 144 0.05
899 87 0.03
900 226 0.08
901 56 0.02
902 146 0.05
903 8 0.00
904 452 0.16
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (873 bp):
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGATGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAATCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCGCCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
GGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCAGCTGATCCCCGGCTTGCGCATTCC
GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCTCCCAGTTAACAGAACATCAGATCGGAGCGAGGGTTGCGGCAGCACATGCTGGGCTCAGACAT
GTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCG
GCGGCATTGGGGTTCTGACGATCGGTGG
Found at i:12084411 original size:26 final size:26
Alignment explanation
Indices: 12084382--12084434 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12084372 GTTGACTTAG
12084382 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12084408 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12084434 G
1 G
12084435 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12088457 original size:26 final size:26
Alignment explanation
Indices: 12088428--12088477 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12088418 GTTGACTTAG
*
12088428 GCATACGGAATTCATTCCCTGTCTGA
1 GCATACGGAATTCATTCCCAGTCTGA
*
12088454 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAATTCATTCCCAGTCT
12088478 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTGA
Found at i:12089355 original size:26 final size:26
Alignment explanation
Indices: 12089319--12089371 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12089309 GTTGATTTAG
*
12089319 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12089345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12089371 G
1 G
12089372 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12090254 original size:891 final size:885
Alignment explanation
Indices: 12086538--12093552 Score: 8147
Period size: 891 Copynumber: 7.9 Consensus size: 885
12086528 CAGCAGGATT
* * * * *
12086538 GGCAGCACGCATAGGGGGACCCGGTAGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGA
1 GGCAGCACGTAGAGGGGGACCCAG-CGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * *
12086603 GCGCCCGTACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAACCATAC
65 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
12086668 ACAGTTCATTCCCATTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTAGGCTC-GA
130 AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGA
** * * * * *
12086732 GGGTGTGCTGGTGCCGCATTTTTCTTCGCCTAGGCACCATCGTCGGAGCATTGTCGGAGAACCTA
195 -CATGTGCTGGTGCCGCATTTTTCTTCGCC-GGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * * * ** * *
12086797 ACCGGCGGCATTAGGGTTTC-AGCGATCAGGGGGGCCTAGGGGGTTTGCGCACATGATGTGCAAT
258 ACCGACGACATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
12086861 GGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
322 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
12086926 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
387 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
12086991 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGATTTTTTAGCTGAATTTTTTTGTGCA
452 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
12087056 TGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTTCGAAAAAATTT
517 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
** *
12087121 TAAAAAATCTGGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-ATGTCGTCTTGCC
582 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA-GTCGTCTTGCC
* *
12087185 ATGAAACTTCACGTGAAGGCCTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
646 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
12087250 GCATGCATAAATTTGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGGAT
711 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * **** *
12087315 CTCATCTCTCTGGCC--CGCAAAGT-GCTCG-CCG--C-C-CGTTTCGTCGGTTGGCTTAGGCAT
776 CCCGTCTCTTTGGCCGGCGTGCCGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * *
12087372 GCAGAGTTCATTCCCAGCCTAAGAT-TAGACTGGACTGAGGGTTGCAGCAACAAGATC
841 ACGGAGTTCATTCCCAGTCTAAGATCGAAAC-AGACCGAGGCTT-----------A-C
* * * * *
12087429 GGTAGCACGTAGAGGGGGACCCGATCGATCCACGGGTTGCGCATCCCG-CCC-CT------CTGA
1 GGCAGCACGTAGAGGGGGACCC-AGCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * *
12087486 ----CCG-GCGCTCGTTTAGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAAG-ATA
65 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AAGCATA
* * *
12087545 C-GAAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTATGGCAGCACATGCTGGGCTC-
129 CAG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * * * *
12087608 GAGCATGTGCTGGTGCCACATTTTACTTCGTCGGGTCACCATCACCGGAGCATCGTCGGAGAACC
193 GA-CATGTGCTGGTGCCGCATTTTTCTTCGCCGGG-CACCATCGCCGGAGCATCGCCGGAGAACC
* * * *
12087673 TGACCGGC-AGCATTGGTGTTCCGGCGATCGGGGGGGCCAGGGGAGGTGTGCGCACACATGATGT
256 TGACCGACGA-CATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCG--CACATGATGT
* * *
12087737 GCGATGGGTGCTGGTTAGTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
317 GCGATGGGTGCTGG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * **
12087802 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTACCCACTAAAGTGTCCAAA
381 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12087867 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTT
446 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* *
12087932 TGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAA
511 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
12087997 AAATTTTAAAAAATCCCGATCTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
576 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12088062 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGG
641 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
12088127 CATTGGCACATAGAAATATGAATATGTGCTTAAACCCACCTACCACCTTATCGATCCACGGCTTG
706 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
12088192 CGTATCCCGCCTCTTTGGCCGGCGTAGTGCC--CGCCCCCCCGCCTGCTTGTTTCGTCAGTTGGC
771 CGCATCCCGTCTCTTTGGCCGGC---GTGCCGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
12088255 TTAGGCATACGGAGTTCATTTCTC-GTCTAAGATCCACAGCTTGCACATCCCGTCTCTCTAGTCG
833 TTAGGCATACGGAGTTCA-TTCCCAGTCTAAGATCGA-A------ACA----G--AC-CGAG--G
*
12088319 ATGTAGTGCC
881 CT-TA----C
* * ** * * * *
12088329 TGCCCGCACGTAGAAAGGGACCCGACCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTG
1 -GGCAGCACGTAGAGGGGGACCC-AGCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * * *
12088394 AGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCTGTCTGAGCATA
64 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * **
12088459 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTGCATGCTGGGCTCAG
129 CAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC-G
* *
12088524 G-CATGTGCTGGTGCCGCATTTTTTTTC-CCTGGGGCACCATCGCCGGAGCATCGCCAGAGAACC
193 GACATGTGCTGGTGCCGCATTTTTCTTCGCC--GGGCACCATCGCCGGAGCATCGCCGGAGAACC
* * * *
12088587 TAACCGAC-AGCATTGGCGTTTCGGCGAT---------CGGGGGGGTGTGCGCACATGATGTGCG
256 TGACCGACGA-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * *
12088642 ATGGGTGCTGGTTCTTGGACCTTATATTGGCCCCCTATCCCTCATCAAAGCTCAAGAACTCACAC
320 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* *
12088707 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGG
385 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12088772 GGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
450 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
12088837 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCTTTCCAAAAAAAT
515 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* * * **
12088902 TCTAAAAAGTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGACTCACCTTGC
580 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
12088967 CATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATT
645 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
12089032 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
710 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*** * * *
12089097 TCCTACCT-TTCTGGCCGGCGTAATGCC--CGCCCGCCTGCCCACTCATTTCGTCGGTTGGCTTA
775 TCCCGTCTCTT-TGGCCGGCG---TGCCGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* *
12089159 GGCATACGGAGTTCATTCCCAGTCTAAGATCTG-ACCAGACCGAGGTTTGCGGTAGC
836 GGCATACGGAGTTCATTCCCAGTCTAAGATC-GAAACAGACCGA-G---GC-TTA-C
* * * * * * * *
12089215 AGGATCGGTAGCAAGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGCCCTTTTGGCC
1 -GG--C---AGCACGTAGAGGGGGACCC-AGCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCC
* * * *
12089280 TGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGATTTAGGCATATGGAGTTCATTCCCAATCTAA
59 GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
12089345 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCATATGTTGGG
124 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
12089410 CTCGGACATGTACTGGTGCCGCATTTTTCTTCACCGCGGTACCATCGCCGGAGCATCGCCGGAGA
189 CTCGGACATGTGCTGGTGCCGCATTTTTCTTCGCCG-GGCACCATCGCCGGAGCATCGCCGGAGA
12089475 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
253 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * **
12089540 CGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCATATCCCTCATCAAACCTTGAGAACTCAC
318 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
12089605 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
383 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * **
12089670 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTGAATTTTTCGG
448 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* *
12089735 TGCATGCCAACAAAAATACAA-GATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
513 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
12089799 CTTTGAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATACAAAACGAGTCGTATT
578 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
12089864 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
643 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
12089929 TTGGCACGTAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCG
708 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * *
12089994 CATCTTGTCTCTTTGGCCGGTGTTATGCCCATTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
773 CATCCCGTCTCTTTGGCCGGCG---TG-CC-GTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
12090059 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAACAGACCGAGGCTTAC
833 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAACAGACCGAGGCTTAC
* * * *
12090112 GGCAGAACGTAGAGGGGGACCCAGCGGATCCTCGGCTTGCGCATCCTGCCCCTCTCGTCGGTTGA
1 GGCAGCACGTAGAGGGGGACCCAGC-GATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * * * *
12090177 GCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCGAGTCTAAGCATAC
65 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
12090242 AGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGG
130 AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGA
** * * *
12090307 CATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATTGCCGGAGCACCACCGGAGAACCTGA
195 CATGTGCTGGTGCCGCATTTTTCTTCGCCG-GGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
* * * * * * *
12090372 TCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGTAGATGATTTGCGATGG
259 CCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
12090437 GTGCTGGTCCTTGGCCCTTGTATTGGCCCCCTATCCCTCA-CAAAACCTCAAGAACTCACACCCC
324 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCAAGAACTCACACCCC
* * * *
12090501 CTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTACCAGTAGCAATTAAAGTGTTTGAAATGGGGA
388 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
12090566 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTGAATTTTTTTATGCA
453 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTGTGCA
* * ** *
12090630 TGCCAAAAAAAATACAAGGATCATGTCTAACAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTT
517 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
12090695 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
582 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
12090760 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
647 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
12090825 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
712 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
12090890 CCGTCTCTCTGGCCGGCGTAGTGCTCGCTCGCCCGCCCGCCCGCCCGCCCACCCGCCCGCTCGTT
777 CCGTCTCTTTGGCCGGC---GTGC-CG-T------------CGCCCG----CCCGCCCGCTCGTT
* * * * * * *
12090955 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAAACCAAGGGTTGC
821 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAACAGACC----G-AG-
12091020 AGCAGTATGATC
880 -GC--T-T-A-C
* * * * *
12091032 GGCAGCACATAGAGGGGGACCGATCGATCCTCAGCTTGCACATCCTGCCCCTCTGGCCGGCTGAG
1 GGCAGCACGTAGAGGGGGACCCAGCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * *
12091097 CGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-CA
66 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* ** ** * * ** * * * **
12091160 GA--CCAGACTGAGGGT-TACAG-TAGCACATG--CTA-CGCT-CGG--GCATGTGCTGGTGCT-
131 GAGTTCATTCCCA--GTCTA-AGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGG-GCTC
* ** * * * * *
12091214 GCATTTTTCTTCGCTGGTGCTGAATTTTTCTTCGCCGGGGCACCATCGCTGGAGCATCGTCGGAG
192 GGA--CAT-GT-GCTGGTGCCGCATTTTTCTTCGCC-GGGCACCATCGCCGGAGCATCGCCGGAG
** * ** * **
12091279 AACCTGACCGGTGGCATTTAGGTTCCGACGATCGAGGTAGCCGGGGGGGTGTGCGCACATGATGT
252 AACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
12091344 GCGATGGATGCTGGTACTTGGCCCTTA-ATATGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
317 GCGATGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
12091408 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAA
381 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
12091473 ATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTT
446 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
12091538 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
511 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* **
12091603 AAATTTTAAACAATCCCGAACCGTAAAAAGTTTCGTAAATCGTGAAAAATAGAAAACGAGTCGTC
576 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
12091668 TTGCCATGAAACTTCACGTGCAGGCTTAAGGGACCAATGTATGAATTTGCAAGCCATAAAAATGG
641 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
12091733 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
706 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
12091798 TGCATCCCGTCTCTTTGGCC-G-GTGCAGT-ACCCACCCGCCCGCACGTTTCGTCGATTGGCTTA
771 CGCATCCCGTCTCTTTGGCCGGCGTGCCGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
12091860 GGCATACGGAGTTCATTTCCAGTCTAAGATC-AGATCAGACTGAGGGTTAC
836 GGCATACGGAGTTCATTCCCAGTCTAAGATCGA-AACAGACCGAGGCTTAC
* * * *
12091910 AGCAGCACGTAGAAGGGAACCCAGCCATTCC-CTGGCTTGCGCATACC-GCCCCTCTGGCCGGCT
1 GGCAGCACGTAGAGGGGGACCCAGCGA-TCCTC-GGCTTGCGCAT-CCTGCCCCTCTGGCCGGCT
* * * * *
12091973 GAGCGCTCGCACGCTCGTTTGGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAACCAT
63 GAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *
12092038 ACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
128 ACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* *** * * *
12092103 GGCATGTGCTGGTGCATTATTTTTCTTCGTCAGGGCACCATCGCCGAAGCATCGTCGGAGAACCT
193 GACATGTGCTGGTGCCGCATTTTTCTTCG-CCGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * *
12092168 AACCGAC-AGCATTGGGGTTCCGGCGATC--GGGGG-C-TGGGGGTGTGCGCACATGATGTGCGA
257 GACCGACGA-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
**
12092228 TGGGTGCTGGTACTTGGCCCTTATATTGGCTGCCTATCCCTCATCAAACCTCAAGAACTCACACC
321 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
12092293 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTAAAATGGG
386 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
12092358 GAAACTTTTTTCAAATGGTCACAAAATCTTTTTCAGTTTGAGTTTTTAGCTGAATTTTTTGGTGC
451 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
12092423 ATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
516 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * *
12092488 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGTC-TGTC
581 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG-C
* * *
12092552 CATGAAACTTCACGTGAAGGCTTAAGAGACTATTGTATGAATTTACAGGCCATAAAAATGGCATT
645 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
12092617 GGCATGCAAAAATATGAAGATATACCTAAACCCACATTCCACCCTATCGATCCACGGCTTGCGCA
710 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
** * * * * *
12092682 TCCCGTCTCTCCGGCCGACGTG--GT-ACCCGCCCGCCTGCTCATTTCGTCGGTTGACTTAGGCA
775 TCCCGTCTCTTTGGCCGGCGTGCCGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
12092744 TACGGAGTTCATTCCCAGTCTAAGATTTG-ATCAGACTGAAGG-TTGC
840 TACGGAGTTCATTCCCAGTCTAAGA-TCGAAACAGACCG-AGGCTTAC
* * * *
12092790 GGCAGCAGTATCGGCAGCATGCAGAAGGGGACCCGGTCGATCC-CTGGCTTGCGCATCCCGCCCT
1 GGCAGC---A----C-G--T--AGAGGGGGACCCAG-CGATCCTC-GGCTTGCGCATCCTGCCCC
* * * * * *
12092854 TCTGGCAGTCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGGTCATTCCT
52 TCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
*
12092919 TGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT----------
117 AGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAC
*
12092973 A--C--GGCT--G-CATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCAACGCCGGAGCATC
181 ATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCGCC-GGGCACCATCGCCGGAGCATC
* * *
12093031 ACCGGAGAACCTGACCGACGACATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGGGCGCAC
245 GCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAC
* *
12093095 ATGAAGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAA
310 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
* * *
12093160 GAACTCACACCCTCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTG
375 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
12093225 TCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCT-AATTTTTAGCTGA
440 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGA
**
12093289 ATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAGGAA
504 ATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA--CT
* ** * ** *
12093353 CCTT-CAAAAAAAATTTAAAAAATCTTGAACCCTAAAAAGTTTTGAAAATTGTGAAAAATAGAAA
566 CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
*
12093417 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCC
631 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
12093482 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGAT
696 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
12093547 CCACGG
761 CCACGG
12093553 TGTCATGAGC
Statistics
Matches: 5291, Mismatches: 636, Indels: 406
0.84 0.10 0.06
Matches are distributed among these distances:
874 1 0.00
875 76 0.01
876 2 0.00
877 7 0.00
878 420 0.08
879 314 0.06
880 533 0.10
881 38 0.01
882 433 0.08
883 9 0.00
884 73 0.01
885 5 0.00
886 10 0.00
887 10 0.00
888 14 0.00
889 6 0.00
890 71 0.01
891 784 0.15
892 391 0.07
893 2 0.00
894 6 0.00
895 1 0.00
896 2 0.00
897 2 0.00
898 3 0.00
899 238 0.04
900 236 0.04
901 515 0.10
902 30 0.01
903 74 0.01
904 19 0.00
905 3 0.00
907 3 0.00
908 66 0.01
909 8 0.00
910 10 0.00
911 3 0.00
912 4 0.00
913 13 0.00
914 714 0.13
915 12 0.00
916 7 0.00
917 9 0.00
918 3 0.00
919 89 0.02
920 22 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
GGCAGCACGTAGAGGGGGACCCAGCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGAC
ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
GACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTTTGGCCGGCGTGCCGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGAAACAGACCGAGGCTTAC
Found at i:12090926 original size:4 final size:4
Alignment explanation
Indices: 12090919--12090949 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
12090909 AGTGCTCGCT
*
12090919 CGCC CGCC CGCC CGCC CGCC CACC CGCC CGC
1 CGCC CGCC CGCC CGCC CGCC CGCC CGCC CGC
12090950 TCGTTTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.03, C:0.74, G:0.23, T:0.00
Consensus pattern (4 bp):
CGCC
Found at i:12091229 original size:21 final size:21
Alignment explanation
Indices: 12091205--12091248 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
12091195 TCGGGCATGT
*
12091205 GCTGGTGCTGCATTTTTCTTC
1 GCTGGTGCTGAATTTTTCTTC
12091226 GCTGGTGCTGAATTTTTCTTC
1 GCTGGTGCTGAATTTTTCTTC
12091247 GC
1 GC
12091249 CGGGGCACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.07, C:0.23, G:0.25, T:0.45
Consensus pattern (21 bp):
GCTGGTGCTGAATTTTTCTTC
Found at i:12092045 original size:26 final size:26
Alignment explanation
Indices: 12092009--12092059 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12091999 TTGACTTAGG
12092009 CATACAGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
* *
12092035 CATACGGAGTTCATTCCCTGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
12092060 GATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:12092940 original size:26 final size:26
Alignment explanation
Indices: 12092900--12092952 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12092890 GTTGACTTAG
**
12092900 GCATACGAAGGTCATTCCTTGTCTAA
1 GCATACGAAGGTCATTCCCAGTCTAA
*
12092926 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGGTCATTCCCAGTCTAA
12092952 G
1 G
12092953 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGGTCATTCCCAGTCTAA
Found at i:12099483 original size:26 final size:26
Alignment explanation
Indices: 12099454--12099506 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12099444 GTTGACTTAG
*
12099454 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12099480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12099506 G
1 G
12099507 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12101207 original size:26 final size:26
Alignment explanation
Indices: 12101168--12101218 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12101158 TGACTTAGGT
12101168 ATACGGAGTCCATTCCCAGTCTAAGC
1 ATACGGAGTCCATTCCCAGTCTAAGC
*
12101194 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTCCATTCCCAGTCTAAG
12101219 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTCCATTCCCAGTCTAAGC
Found at i:12102241 original size:231 final size:227
Alignment explanation
Indices: 12101811--12102270 Score: 575
Period size: 231 Copynumber: 2.0 Consensus size: 227
12101801 CCGAAACCCA
* * * * *
12101811 CCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGCCTGGCCGGCGAAGTGCTCGCCCGC
1 CCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTGCCTGGCCGGCGAAGTGCCCGCCCAC
* * * *
12101876 CCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCATTCTAAGATCAG
66 CCACCCGCCCGCTCGTTTCGTCGGTTGGCTCAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * * * * *
12101941 ATCAGACAGAGGGTTGCGGCAGCAGGATCGACAACACGCAAAGGGGGACTCGATCAATCCCCTAC
131 ACCAGACAGAGGGTTGCGACAGCAGGATCGACAACAAGCAAAGGGGGACCCGACCAATCCCCGAC
12102006 TTGCACATCCCGCCCCTCTGGCCGACTGAGCG
196 TTGCACATCCCGCCCCTCTGGCCGACTGAGCG
* * *
12102038 CCTACCACCGTATCGATCCATGGCTTGCACATCCCATCT-CTCTGGCCGGCGTAGTGCCCACCCG
1 CCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTGC-CTGGCCGGCGAAGTG----CCCG
* *
12102102 CCCACCCACCCGCCCGCTCGTTTCGTTGGTTGGCTCAGGCATACGGAGTTCATTCCCAGTCTAAG
61 CCCACCCACCCGCCCGCTCGTTTCGTCGGTTGGCTCAGGCATACAGAGTTCATTCCCAGTCTAAG
* * * * * *
12102167 ATCAGACCAGACCA-AGGGTTTCGATAGCAGGATCGACAGCAAGTAAAGGGTGACCCTG-CCGAT
126 ATCAGACCAGA-CAGAGGGTTGCGACAGCAGGATCGACAACAAGCAAAGGGGGACCC-GACCAAT
* * *
12102230 CCCCGACTTGCATATCCTGCCCCTCTGGCCGGCTGAGCG
189 CCCCGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCG
12102269 CC
1 CC
12102271 CGCACGTTCA
Statistics
Matches: 197, Mismatches: 29, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
226 1 0.01
227 48 0.24
231 145 0.74
232 3 0.02
ACGTcount: A:0.19, C:0.36, G:0.25, T:0.20
Consensus pattern (227 bp):
CCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTGCCTGGCCGGCGAAGTGCCCGCCCAC
CCACCCGCCCGCTCGTTTCGTCGGTTGGCTCAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACAGAGGGTTGCGACAGCAGGATCGACAACAAGCAAAGGGGGACCCGACCAATCCCCGAC
TTGCACATCCCGCCCCTCTGGCCGACTGAGCG
Found at i:12102329 original size:26 final size:26
Alignment explanation
Indices: 12102299--12102351 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12102289 CTTGACTTAG
*
12102299 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12102325 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12102351 G
1 G
12102352 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:12104575 original size:717 final size:719
Alignment explanation
Indices: 12103172--12104692 Score: 2226
Period size: 717 Copynumber: 2.1 Consensus size: 719
12103162 CGGTTGAGCG
* * *
12103172 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATC
1 CCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
* * * **
12103237 GGACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTTGTC
66 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAGTTTTCTTCATC
* * *
12103302 AGGGCACCGTCACTGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGATTTCGACGATCGAA
131 AGGGCACCATCACTGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGATTCCAACGATCGAA
* * *
12103367 GGGGCCGTGGGCGTGTGCGCACACGATTTGTGATGGGTGCTGGTACTTGGCCCTTATATTTGCCC
196 GGGGCCGTGGGCGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
12103432 CCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
261 CCTATCCCTCATCAAACCTCAAGAACTCATAACCCCTTAAAGAGCATTGGAGATTTTACAGGTTT
* *
12103497 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACATTTTTTTCAAATGGTCACAAAATCTTGT
326 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
12103562 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAGGGATCACGTCTAAA
391 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTAAA
* * *
12103627 AAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
456 AAGTTTGGGGCCAAAAATCTTCTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* ** * * *
12103692 AATCATGAAAAATAGAAAACGAATCGTCTTGGGATGAAACTTCACTTGAAGGCTTAAGGGACCGT
521 AATCATGAAAAATAGAAAACGAATCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCAT
*
12103757 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
586 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
* * * *
12103822 ACCTAGCACCCTATCGTCCCACGGCTTGTGCATCCCATCTCTCTGGCCAACGTAGTGCCCGCCCA
651 ACCTACCACCCTATCGTCCCACGGCTTGCGCATCCCACCTCTCTGGCCAACATAGTGCCCGCCCA
12103887 CCCA
716 CCCA
* * * * * * *
12103891 CCCGCCCGCTCGTTTCATCGGTTTACATAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC
1 CCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
* * **
12103956 AGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAGTTTTCTTCATC
66 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAGTTTTCTTCATC
* * * * * *
12104021 GGGGCACCATC-GTCGGAGCATCGTCGGAGAACCTGACCGACGGTATTGGGGTTCCAACGATCGG
131 AGGGCACCATCACT-GGAGCATCATCGGAGAACCTGACCGACGGCATTGGGATTCCAACGATCGA
* * * * *
12104085 GGGGGTCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCC
195 AGGGGCCGTGGGCGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
12104149 CCTTATCCCTCATCAAACCTCAAGAACTCA-AACCCTTTAAAGGGCATTGGAGATTTTACAGGTT
260 CCCTATCCCTCATCAAACCTCAAGAACTCATAACCCCTTAAAGAGCATTGGAGATTTTACAGGTT
12104213 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
325 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
12104278 TACACTTCGAGTTTTTAGTTGAATTTTTTTATGCATGCCAATAAAAATACAAGGATCACGTCTAC
390 TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTAA
* * *
12104343 CAAGTTTGGGGCCAAAAATCCTTCT-GAAAAAATTTTAAAAAATCTCTAACCGCAAAAAGTTTCA
455 AAAGTTTGGGGCCAAAAAT-CTTCTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* *
12104407 AAAATCATGAAAAATAGAAAACGAGTCTTCCTGCCATGAAACTTCACGTGAAGGCTTAAGCGACC
519 AAAATCATGAAAAATAGAAAACGAATCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGCGACC
* *
12104472 ATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCACATAGAAATATGAAGATGTGCCTAAAC
584 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
**
12104537 CCACCTACCACCCTATCGAT-CCACGGCTTGCGCATCCCACCTCTCTGGCCGGCATAGTGCCCGC
649 CCACCTACCACCCTATCG-TCCCACGGCTTGCGCATCCCACCTCTCTGGCCAACATAGTGCCCGC
** *
12104601 CCGTCCG
713 CCACCCA
* ** * * * *
12104608 CCCGCTCGCTTTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCGTTCACAGTC-AAAATTGGACC
1 CCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
* *
12104672 GGGCTGAGGGTTGCGGCAGCA
66 GGACCGAGGGTTGCGGCAGCA
12104693 GCATAGGTAG
Statistics
Matches: 709, Mismatches: 90, Indels: 9
0.88 0.11 0.01
Matches are distributed among these distances:
716 26 0.04
717 429 0.61
718 84 0.12
719 170 0.24
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (719 bp):
CCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAGTTTTCTTCATC
AGGGCACCATCACTGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGATTCCAACGATCGAA
GGGGCCGTGGGCGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCAAGAACTCATAACCCCTTAAAGAGCATTGGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTAAA
AAGTTTGGGGCCAAAAATCTTCTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
AATCATGAAAAATAGAAAACGAATCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGTCCCACGGCTTGCGCATCCCACCTCTCTGGCCAACATAGTGCCCGCCCA
CCCA
Found at i:12106577 original size:26 final size:26
Alignment explanation
Indices: 12106541--12106593 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12106531 GTTGACTTAG
*
12106541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12106567 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12106593 G
1 G
12106594 ATCGAACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12108301 original size:862 final size:862
Alignment explanation
Indices: 12103928--12109085 Score: 5164
Period size: 862 Copynumber: 5.9 Consensus size: 862
12103918 TAGGCATATG
* * *
12103928 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* * * *
12103993 ATGTGCTGGTGCCGTAGTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGAC
* ** *
12104058 CGACGGTATTGGGGTTCCAACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
131 CGACGGCATT-GGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * * *
12104123 GTTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCA-AACCCTTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
12104187 AAAGGGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
12104252 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTATGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
12104317 AATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-TTCTGAAAAAATTTTAA
389 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAA
* * ** * *
12104381 AAAATCTCTAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTTCCTGCCATGA
453 AAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
12104446 AACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCAC
518 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
** * * *
12104511 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
583 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCG
* * *
12104576 CCTCTCTGGCCGGCATAGTGCCCGCCCGTCCGCCCGCTCGCTTTTTTCGTCGGTTGGCTTAGGCA
648 TCTCTCTGGCCGGCATAGTGCCCG--C--CCGCCCGCTCG----TTTCATCAGTTGGCTTAGGCA
* * * * * ** * * * *
12104641 TACGGAGTTCGTTCACAGTC-AAAATTGGACCGGGCTGAGGGTTGCGGCAGC-AGCATAGGTAGC
705 TACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGCAAG-AT-CGCAGC
* *
12104704 ACGTAGAGGGGGACCTGGTCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGTGCCC
768 ACGCAGA--GGG----GG---A--CCCGAC---CG-AT------CCTC-AG-C-G--GA-T---C
* * ** * ** *
12104769 GTAAGCTTTTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAACCTAAGCATACG
803 GCATGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * *
12104829 GAGTTCATTCTCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* *
12104894 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGG---CA----C----CATCGCCGGAGAACCTGA-
66 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGAC
* * *
12104947 CGACAGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGG
131 CGACGGCATT-GGGTTCCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
12105012 TGCCGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCC
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
12105077 TAAAAAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATAAAAGTGTCTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
12105142 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGTTGAATTTTTTTGTGCATGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
12105207 CAACAAAAATACAAGGATCAAGTCTGCC-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAA
* * *
12105271 AAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATCGAAAATGAGTCGTCTTGCCATGA
453 AAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
12105336 AACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGACATAAAAATGGCAATAGCAT
518 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * * *
12105401 GCAAAAATATGAAGATGTACCAAAACCCACCTGCCACCCTATCGATCAACAGCTTGTGCATCCTG
583 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCG
* * * **
12105466 TCTCTCTGGCCGGCATATTACCCGTCCGCTAGCTCG-TT--TC-G-T--C---GG--T----AGT
648 TCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGT
* * *
12105515 TCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTACGACAGCAAGATTGGCAGCATGCAGAG
713 TCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGACAGCAAGA-TCGCAGCACGCAGAG
* * ** * * ** * * * *
12105579 GGGGACCCGGCCGATCCCCAGCTTA-CGCATCCTGCTCCTCTAGCCGGCTGA-GT-GCCCGTACG
776 GGGGACCCGACCGATCCTCAGCGGATCGCA---TGCTCCTTTCGTGGGTTGACTTAG-GCATACG
** **** *
12105641 CTCGTT--TTGTGGGTTAACTTAGGCATACA
837 -GAGTTCATTCCCAG-T--C-TAAGCATACA
* * * *
12105670 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGTTGGGCACAGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* * * * * * *
12105735 ATGTGCTGATGCCGTATTTTTCTTCATCAGGGCACGATCGTCGGAGCATCGCTGGAGAATCTGAC
66 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGAC
* * * *
12105800 CGGCGGCATTGGGGTTCCGGTGATCGGGTGGGCCGTGGGGTGTGCACACATGATGTGCGATGGGT
131 CGACGGCATT-GGGTTCCGGCGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
12105865 GCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
12105930 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
12105995 TTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * * * *
12106060 AACAAAAATAAAAGGACCGCGTCTACCAATTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAA
389 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
* * ** *
12106125 AAATATCGAACAGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAA
454 AAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
12106190 AATACACCATGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 ACTTCA-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * *
12106255 GTAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGTCTTGCGCATCCCG
583 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCG
* * * * *
12106320 TCTCTCTGGCCGACGTAGTGCTCGCCCGTCCGCCTGTCCGCTCGTTTCACCGGTTGGCTTAGGCA
648 TCTCTCTGGCCGGCATA--G-T-GCCCG--C-CC-GCCCGCTCGTTTCATCAGTTGGCTTAGGCA
* * * * * * *
12106385 TACAGAGTTCATTCCCAGCCTAAGATCGGATCGAACAGAGGGCTGTGACAACAAGATTGCTAGCA
705 TACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGCAAGATCGC-AGCA
* *
12106450 AGCAGAGGGGGACCCTTTCGATCCCCGGCTTGTGCATCCTACTCCTCTGGTCGACTGAGCGTCCG
769 CGCAGAGGGGGA-CC---CGA----C--C----G------A-TCCTC-AG-CG---GA---T-CG
*
12106515 CACGC-CCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
804 CATGCTCC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * **
12106574 GAGTTCATTCCCAGTCTAAGATC-GAACCTGACCGAGGGTTGCAGCAGCACATGCTACGCTC-GA
1 GAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAG-
* * ** * * ** ** *
12106637 GCAGGTGCTGGTGCCGCA-TTTTCTAAGCCGGGGCACCGTCACCAGAGCATCATCAGAGAACCTG
64 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTG
* * * * * * * * *
12106701 ACAGGCGACATTGGGTTCCGACGATCGGGGGGCTGGGGGTTGTGTGCACGTGATGTGCAATGGGT
129 ACCGACGGCATTGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
12106766 GCTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
12106831 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
12106896 TTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
12106961 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCTTTTTGAAAAAGTTTTAAA
389 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
* * *
12107026 AAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATTAA
454 AAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* ** ** *
12107091 ACTTCACATGAACCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTTCATTGGCATG
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
12107156 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGACTTGCGTATCCTGT
584 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGT
* *** * * * *
12107221 CTCACTGGCCGATGTGGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATGCAA
649 CTCTCTGGCCGGCATAGTG--C-CC-GCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAG
* * * * *
12107286 AGTTCATTCCCAATCTAAGATCGAACTGGACCAAGGGTT------GC---A--GCAGCACGCAGA
710 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGCAAGATCGCAGCACGCAGA
* * * ** * *** * ***
12107340 GGAGGACCCGACCGAT-CTC--CGGCTTGCGCATCCATCCCCT-ATGGCCAG-C-TGGGCGCCCG
775 GGGGGACCCGACCGATCCTCAGCGG-AT-CGCATGC-TCCTTTCGTGGGTTGACTTAGGCATACG
* * ***
12107399 CACGCTCATTTCGTGGGT-TGATTTAGGCATACA
837 GA-GTTCA-TTC-CCAGTCT-A---A-GCATACA
* * * * ** * * *
12107432 AAGTTCATTCCCAATCTAAGATAAGACCGGACCGAGGGTTGCAACAGCACATGCTGGGGTCGGGA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* *
12107497 ATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACAATCGTCAGAGCATCGCCGGAGAACCTGAC
66 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGAC
* * *
12107562 CGACGGCATTAGGGTTTCGGTGATCGGGGGGCCGAGAGGGGTGTGTGCACATGATGTGCGATGGG
131 CGACGGCATT-GGGTTCCGGCGATCGGGGGGCCG-G-GGGGTGTGCGCACATGATGTGCGATGGG
12107627 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
12107692 TAAAGAGCATTTGCA-ATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGAC
258 TAAAGAGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
12107756 ACTTTTTTCAAATGGTCACAAAATCTTCTAGACTACGAGTATTTAGCTGAATTTTTTTGTGCATG
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
12107821 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAGTTTTA
387 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
*
12107886 AAAAATAC-CGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCCT
452 AAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
12107950 GAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGC
516 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
12108015 ACGCAGCAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCAACGGCTTGCGCATCC
581 ACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCC
* *
12108080 CATCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGA
646 CGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGA
** * * * *
12108145 GTTCATTCCTGGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA
711 GTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGCAAGATCG-CAGCACGCAGA
*
12108210 GGGGGACCCGACCGATCCTC-G-GGAT-GCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
775 GGGGGACCCGACCGATCCTCAGCGGATCGCATGCTCCTTTCGTGGGTTGACTTAGGCATACGGAG
* *
12108272 TTCATT-CCAGTCTAAGCGTACG
840 TTCATTCCCAGTCTAAGCATACA
* * ** * * * *
12108294 GAGTTCATTCCCAGTCTATGATCGGACTGGTCTGAGGGTTGCGGTAGCACATGCTGGGCTCCGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* * **
12108359 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAACATCATCGGAGAACCTGAC
66 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGAC
* * * * * *
12108424 AGACGGTAATGAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATAGGT
131 CGACGGCATTG-GGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
12108489 GCTGGTACTTTGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGCACTCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
** *
12108553 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCATATGAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
12108618 TTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-AAATTTTTTTTATGCATGC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGC
* * * * **
12108682 CAACAAAAATACGAAGTTCATTCCCAGTCTA-AAATTTTTTTCTGCATGCCACCAAAACTACGAG
388 CAACAAAAATAC-AAG--GA-TCAC-GTCTACCAA----GTT-TG---G--GGC----C-A--A-
12108746 GATCACGTCTACCAAGTTTGGGGTCGAAAATGCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT
430 -A--A---CT-CC----TT----TC------------GAAAAAATTTTAAAAAATCTCGAACCGT
*
12108811 AAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
468 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
12108876 CTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCACGTAGAAATATGAAGA
533 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGA
* * * *
12108941 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCTGGCA
598 TGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCCGGCA
* * * *
12109006 TAGTGCCTGCCCGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGACTTCATTCT
663 TA--G--TGCCCGCCCGCCCG--C--TCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCC
12109071 CAGTCTAAGATCGGA
720 CAGTCTAAGATCGGA
12109086 TCGGGCCAAG
Statistics
Matches: 3550, Mismatches: 508, Indels: 382
0.80 0.11 0.09
Matches are distributed among these distances:
836 3 0.00
837 3 0.00
838 6 0.00
839 13 0.00
840 1 0.00
841 96 0.03
844 2 0.00
845 1 0.00
846 3 0.00
848 1 0.00
851 7 0.00
852 256 0.07
853 137 0.04
854 125 0.04
855 3 0.00
856 5 0.00
857 2 0.00
858 144 0.04
859 52 0.01
860 184 0.05
861 58 0.02
862 600 0.17
863 16 0.00
864 8 0.00
865 9 0.00
866 17 0.00
867 40 0.01
868 16 0.00
869 9 0.00
870 36 0.01
871 5 0.00
872 5 0.00
874 3 0.00
875 1 0.00
876 1 0.00
877 4 0.00
878 59 0.02
879 6 0.00
880 3 0.00
881 3 0.00
882 2 0.00
883 3 0.00
884 14 0.00
885 3 0.00
886 10 0.00
887 1 0.00
888 3 0.00
889 30 0.01
890 319 0.09
891 154 0.04
892 1 0.00
893 2 0.00
894 1 0.00
896 60 0.02
897 5 0.00
898 6 0.00
899 6 0.00
900 127 0.04
901 418 0.12
902 15 0.00
903 43 0.01
904 77 0.02
905 3 0.00
906 13 0.00
907 7 0.00
908 5 0.00
909 215 0.06
911 1 0.00
913 14 0.00
915 1 0.00
917 48 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (862 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGAC
CGACGGCATTGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
ATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCA
TTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGCAAGATCGCAGCACGCAGAGGGGGA
CCCGACCGATCCTCAGCGGATCGCATGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATACA
Found at i:12109796 original size:12 final size:12
Alignment explanation
Indices: 12109779--12109805 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
12109769 CCAAGGGCTG
12109779 CGGTAGCAGGAT
1 CGGTAGCAGGAT
12109791 CGGTAGCAGGAT
1 CGGTAGCAGGAT
12109803 CGG
1 CGG
12109806 CTGCACGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.19, G:0.44, T:0.15
Consensus pattern (12 bp):
CGGTAGCAGGAT
Found at i:12110237 original size:677 final size:677
Alignment explanation
Indices: 12108714--12110440 Score: 2775
Period size: 677 Copynumber: 2.6 Consensus size: 677
12108704 CCCAGTCTAA
* * * * * *
12108714 AATTTTTTTCTGCATGCCACCAAAACTACGAGGATCACGTCTACCAAGTTTGGGGTCGAAAA-TG
1 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTC
* * * *
12108778 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
65 CTTCTGAAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA
*
12108843 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
129 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
12108908 TGAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
194 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * *
12108973 CACGGCTTGTGCATCCCATCTCTCTGGCTGGCATAGTGCCTGCCCGCCCGCCCGCCCGTTCGTTT
259 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCACCTGCTC-TTT
* * *
12109038 CATCGGTTGGCTTAGGCATACGGACTTCATTCTCAGTCTAAGATCGGATCGGGCCAAGGGTTGCG
323 CATCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGGCCAAGGGCTGCG
* *
12109103 GTAGCAGGATCGGTAGTAGGATCGGCAGCACGCAGAGGAGAACCTGGCCGTCGACATTGGGGTTC
388 GTAGCAGGATCGGTAGCAGGATCGGCAGCACGCAGAGGAGAACCTGACCGTCGACATTGGGGTTC
*
12109168 CGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTT
453 CGGCGATCGGGGGGCCGGAGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
12109233 ATGTTGGCCCCCTATACCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
518 ATCTTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
12109298 TTACATGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGGATACTTTTTTAAAATGGTCAC
583 TTACAGGTTTGCTGCCAGTAGCCATTAAACTATCTGAAATGGGGATACTTTTTTAAAATGGTCAC
12109363 AAAATCTTGTACACTTAGAGTTTTTAGCTG
648 AAAATCTTGTACACTTAGAGTTTTTAGCTG
* *
12109393 AATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACACC
1 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
*
12109458 TTCTGAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
66 TTCTGAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACG
*
12109523 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATA
131 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
12109588 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCA
196 AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
12109653 CGACTTGCGCATCCCGTCTCTCAGGCCGGCGTAGTGCCTGCCCGCTCGCCCACCTGCTCATTTCA
261 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCACCTGCTC-TTTCA
* *
12109718 TCGGTTGGCTGAGGCATACGGACTTCATTCCCAGTCTAAGATCAGACCGGGCCAAGGGCTGCGGT
325 TCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGGCCAAGGGCTGCGGT
*
12109783 AGCAGGATCGGTAGCAGGATCGGCTGCACGCAGAGGAGAACCTGACCGTCGACATTGGGGTTCCG
390 AGCAGGATCGGTAGCAGGATCGGCAGCACGCAGAGGAGAACCTGACCGTCGACATTGGGGTTCCG
*
12109848 GTGATCGGGGGGCC-GAGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTAT
455 GCGATCGGGGGGCCGGAGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
12109912 CTTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGCGATTTT
520 CTTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
12109977 ACAGGTTTGCTGCCAGTAGCCATTAAACTATCTGAAATGGGGATACTTTTTTAAAATGGTCACAA
585 ACAGGTTTGCTGCCAGTAGCCATTAAACTATCTGAAATGGGGATACTTTTTTAAAATGGTCACAA
*
12110042 AATCTTGTACACTTTGAGTTTTTAGCTG
650 AATCTTGTACACTTAGAGTTTTTAGCTG
* *
12110070 AA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCC
1 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* *
12110134 TTCTGAAAAAATTTAAAAAAATCCCGAGCCGTAAAAGGTTTTAAAAATCGTGAAAAATAGAAAAC
66 TTCTGAAAAAATTT-AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAC
* * ** *
12110199 GAGTAGTCTTGCCATGAAACTTAACGTGAATTCTTAAGGGACCATTGTATGAATTTACCAGCCAT
130 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
12110264 AAAAATGGCGTTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
195 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
12110329 AGGGCTTGCGCATCCCGTCTCTCTGGCCGACGTGGTGCCCGCCCGCCCGCCCA-CT-CGT-TTT-
260 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCACCTGC-TCTTTC
* * *
12110390 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGG
324 ATCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGACCGG
12110441 ATGGAGGGTT
Statistics
Matches: 968, Mismatches: 77, Indels: 12
0.92 0.07 0.01
Matches are distributed among these distances:
673 46 0.05
674 3 0.00
675 1 0.00
676 75 0.08
677 415 0.43
678 367 0.38
679 61 0.06
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (677 bp):
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCTGAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCACCTGCTCTTTCAT
CGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGGCCAAGGGCTGCGGTA
GCAGGATCGGTAGCAGGATCGGCAGCACGCAGAGGAGAACCTGACCGTCGACATTGGGGTTCCGG
CGATCGGGGGGCCGGAGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATC
TTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAACTATCTGAAATGGGGATACTTTTTTAAAATGGTCACAAA
ATCTTGTACACTTAGAGTTTTTAGCTG
Found at i:12111846 original size:26 final size:26
Alignment explanation
Indices: 12111817--12111869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12111807 GTTGACTTAG
*
12111817 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
*
12111843 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
12111869 G
1 G
12111870 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:12113595 original size:25 final size:26
Alignment explanation
Indices: 12113559--12113607 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
12113549 GTTGACTTAG
12113559 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12113584 GCATACGTAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
12113608 GAGATCGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12116280 original size:26 final size:26
Alignment explanation
Indices: 12116244--12116296 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12116234 GTTGACTTAG
12116244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12116270 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12116296 G
1 G
12116297 AGCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12116602 original size:904 final size:899
Alignment explanation
Indices: 12112698--12119151 Score: 8241
Period size: 891 Copynumber: 7.2 Consensus size: 899
12112688 TGGGTTGACT
* * * * *
12112698 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGCACTGGACAGAGGGCTACGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
** * *
12112763 GGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCCTCGGGGCACCATCGTC--AG-A------G
66 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGG
* * ** *
12112819 AG--CCTGATCAACGGCATTGGGGTTCCGGTGATC-GGGGGGCC-GGAGGGTGTGCGCACATGAT
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
*
12112880 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
196 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
12112945 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
261 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** ** * *
12113009 AATGGAAACACTTTTTTCAAATCATCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
**
12113074 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTCCGAA
391 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAA
* * * * * *
12113139 AAAAGTTT-AAAAATCTCG-ACCGCAAAATGGTTCGAAAATCATGAAAAATATAAAACGAGTCGT
455 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
** * * *
12113202 CTTGCCATGAAACTTCACGTGAAGGCTTAAGCCACCTTTTTATGAATTTACCAGCCATAAAAATG
520 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12113267 GCATTGGCACGTAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTA
585 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12113332 GCGCATCCCGTCTCTCTGGCCGAAGTGGTGCCCGCCCGC-CTGCCCGCTCGTTTCGTCGGTTGGC
650 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTC-GCCCGCTCATTTCATCGGTTGGC
* * * * * *
12113396 TTAGGCATACGGAGTTCATTCTCAATCTAAGATCAGACCGGATGGAGGGTTGCGGTAGCAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATC
* * *** * **
12113461 GGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCTTACCCCTCTGGCTGATTGA
779 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
12113526 GCGCCGGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTC
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * ** *
12113581 TAAGCATACGTAGTTCATTCCCAGTCTGAGATCGGATCGGACCGAGGGTTGTGGCAAAACATACT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * ** * *
12113646 GGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGCCGA
66 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGG
* ** ** * *
12113711 ATAACCTGACCGGTGGCATTGGGGTTCCGACGA-CTGAAGGGGCCGGGGGGGTGTGTGCACATTA
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGGTGTGCGCACATGA
* * *
12113775 TGTGCGATGGGTGCTGGTACTTGGCCGTTATATTGGCCTCCTATCCGTCATCAAACCTCGAGAAC
195 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
12113840 TCACACTCCCTTAAGGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTTTCTG
260 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
12113905 AAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTTGTTGAATTTT
325 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
12113970 TTTGTGCATGCCAAAAAAGATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCTGA
390 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGA
* * * *
12114034 AAAAATTTTAAAAAATCCCAAACCCCAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCG
454 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
* *
12114099 TCTCGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12114164 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCT
584 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
12114229 TTCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG---G-CCGCTCATTTCGTCAGTTGGC
649 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCTCATTTCATCGGTTGGC
* ** * * * *
12114286 TTAGGCGTACGGAGTTCATTCCCAGTCTAAGATC-GAAGTAGACCGAGGGATACAGTAGCAGGAT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCAGCAGCAGGAT
* * * * *** * ** * *
12114350 CAGTAGCACGTAGAGGGGGACCTGGTTGATCCCCAGCTTGCGCATCTTGCCACTCTGGCTGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
12114415 AACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAGACAGAGTTCATTCCCAGTC
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
12114472 TAAGCATACGGAGTTAATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGACAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * * *
12114537 GAGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCATCATCGTCGGAGCATCACCGG
66 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGG
* * * * *
12114602 TGAACCTGACCGGCGACGTTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGAT
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * * * * *
12114667 GGGCGATGGATGCTGGTACTTGGCCCATATGTTGGCCCCCTATCCCTCATGAAACCTCGAGCACT
196 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
12114732 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGA
261 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
12114796 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
12114861 TTGTGCATGCCAAAGAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAA
391 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAA
* * * * *
12114926 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGT
455 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
12114991 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
520 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
12115056 GAATTGGCATGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
585 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** *
12115121 GCGCATCCCGCCTCTCTAGCCTG-CGTAGT----G--C-C-CGCCCACTCATTTTGTCGATTGGC
650 GCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCTCGCCCGCTCATTTCATCGGTTGGC
* ** * *
12115177 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCACA-CTGAGGG-T-CATGGCAGTAGG
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCA--GCAGCAGG
* * * ** * *
12115239 ATCGGCAGCCCGTAAAGGGGGATGC-AGCCGGTCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGG
776 ATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * ** * *
12115303 CTGAACGCCCGCACGCTCATTTCGTTGATTGACTAAGGCATATAGAGTTGATTCCCAATC
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
12115363 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGTGGCAGCACAAGTT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * *
12115428 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC-TCTGGGGCACCATCGCCGGAGCATCGTCG
66 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCCAGAGCATCGCCG
* * ** *
12115492 GAGAACCTGACCGGCGGCATTGGGGTTCCGTCGATCGGTAGGGCCGGGGGGGTGTGCACACATGA
130 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
* * *
12115557 TGTGTGATGGGTGCTGGTACATGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAAC
195 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
12115622 TCACACGCCCTTAAAGAGCATTTCAAATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTG
260 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
12115687 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTCTTAGCTGAATTTT
325 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
12115752 TTTATGCATGCCAAAAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCATAAATCCTTCCGA
390 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAATCCTTCCGA
* ** * * * *
12115817 AAAGATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCA
454 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
*
12115882 TCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
12115947 GGCATTGGCATGGAGAAATATGATGATGTGCATAAACCCACCTACCACCCTATCGATCCATGGCT
584 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
12116012 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGTCTGCCCGCTCGCTCGCTCATTTCATTGGT
649 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC---C-GCCCGCTCGCCCGCTCATTTCATCGGT
* * ** *
12116077 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGATTGAGGGTTGCAAAAGTAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAG
* * * *
12116142 GATCGGCAGCACGCAGAGTGGCACCC-AGCCGATCCCCGGCATGCGCATCCCGCCTCTCTGGCCG
775 GATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
12116206 ACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
12116267 TAAGCATACGGAGTTCATTCCTAGTCTAAGAGCAGACCGGACCGAGGGTTGCGACAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* *
12116332 GGGCTCGAGCATGTGCTGGTGCCGCA-TTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGG
66 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGG
* *
12116396 AGAACCTGACCGACGGCATTGGGGTTCC-AGTGATCGGGGGGGCCGGGGAGGTTGTGCGCACATG
131 AGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGG-GGGTGTGCGCACATG
* *
12116460 ATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAA
194 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
12116525 CTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAACCATTAAAGTGTTT
259 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
12116590 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATGT
324 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
12116655 TTTTGTGCATGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAATCTCCTCCCG
389 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-ATCCTTCCG
* * *
12116720 AAAAAATTTTAAAACATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
453 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTC
*
12116785 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAA
518 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** *
12116850 TGGCATTGGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGC
583 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * *
12116915 TTACGTATCCCGTCTCTCTGGCCGGCATAATGCCTGCCCGCCCGCCCGCAT-GTTTCGAT-GGTT
648 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGC-TCATTTC-ATCGGTT
* * *
12116978 GGCTTAGGCATACGGAGTTCATTCCCAATCTAATATC-GAACC-GAATCGAGGGTTGCGGCAGCA
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ATCGAGGGTTGCAGCAGCA
* * * * * * *
12117041 AGATTGGCAGCACACAGAGGGGGGCCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCA
774 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
12117106 GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
12117167 TAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTACGGTAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * *
12117232 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCGG
66 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGG
* * * *
12117297 AGAACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGGTGTGTGTACATGA
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGA
*
12117362 TGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
195 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
12117427 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAGAGTGTCTG
260 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
12117492 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
325 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
12117557 TTTGTGCATGCCAACAAAAATACAAGGATCACGTATACCAAGTTTGTGGCTAAAAATCTTTCCAA
390 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAATCCTTCCGA
** * * *
12117622 AAAAATTTTAAAAAATCAAGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
454 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
12117687 TCTTGCCGTGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * * *
12117752 GCCATTGGCATGCTGGAATATGAAGCTCTGCCTAAACTCACCTACCACCCTATCGATCCATGGCT
584 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
12117817 TGCGCATCCCGTCTCTCTGGCCGACGGAGTGCCCGCCCGCT----CG----TTTCATCAGTTGGC
649 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCTCATTTCATCGGTTGGC
* * * * ** * * * *
12117874 TTAGGCATACAGATTTCATTCCCAGACTAATATCAGACTGGTTTGAGGGTTGCAGCAGCAAGATT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATC
* * *
12117939 GACAGCACACAGAGGGGGACCCGACC-ATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGA
779 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
12118003 GCGCCC-TACGCTCGTGTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** * * *
12118058 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAATCAAGGGTTGCGGCAGCACATGTT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * *
12118123 GGGCTCAAGCATCTGCTGGTGTCACATTTTTCTTCGTCGGAGCACCAT---C---G--T---CGG
66 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGG
* * * *
12118177 AGAACCTGGCCGGCGGTATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGGTGTGCGCACA
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGG-GGTGTGCGCACA
* * * *
12118242 TGATGCGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCCATCCCTCATCAAACCTCGAA
192 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
12118307 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGT
257 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
12118372 CCGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
322 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * *
12118437 TTTTTTTTGCATGCCAACAAAAATACAAGGATTACGTATACCAAGTTTGGGGCCAAAACTTCTTC
387 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTC
* ** * * *
12118502 TGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAGAATAAAAAACGAG
451 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAG
* * *
12118567 TCGTCTTGCCATGAAACTTCATGAGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAA
516 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
12118632 AATGGCATTGGCACT-CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
581 AATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
12118696 TGCTTGTGCATCCCGTTTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGTCTGCCCGTTCATTTCGT
645 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-TC-GCCCGCTCATTTCAT
* ** ** * * * * * *
12118761 CGATTGGCTTAGGCATTTGGAGTTTTTTCCCAGTCTAAGATCGGACCGGACCGAAGGTTACGGCA
706 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCA
* * * * * * *
12118826 GCAGGATCTGCAGCACGCAGAAGGGGACCCGACTGATCCCTGACTTGTGCATCCCACCCCTCTGG
771 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
** * * * *
12118891 AAGGCTGAGCACCCGCAAGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
836 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
12118955 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGTACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * ** * * * * * * *
12119020 GGGCTCGGGCATGGGCTGCAGCAATATTTTTCTTTGTTGGGGCACCAACGTCAGAGCATTGCCGG
66 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGG
* * * * *
12119085 AGAACTTGACCGACGACATTGGGGTTCCAACGATCGGGGGGGCC-GGGGGGTGTGCACACATGTT
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
12119149 GTG
196 GTG
12119152 TCTGAAATGG
Statistics
Matches: 4850, Mismatches: 623, Indels: 176
0.86 0.11 0.03
Matches are distributed among these distances:
880 41 0.01
882 8 0.00
883 558 0.12
884 1 0.00
885 4 0.00
886 2 0.00
888 1 0.00
889 4 0.00
890 295 0.06
891 1063 0.22
892 387 0.08
893 91 0.02
894 30 0.01
895 85 0.02
896 137 0.03
897 305 0.06
898 180 0.04
899 2 0.00
900 264 0.05
901 535 0.11
902 8 0.00
903 94 0.02
904 711 0.15
905 2 0.00
906 2 0.00
908 40 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGG
AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAA
AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCTCATTTCATCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
Found at i:12117180 original size:26 final size:26
Alignment explanation
Indices: 12117144--12117196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12117134 GTTGACTTAG
* *
12117144 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12117170 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12117196 G
1 G
12117197 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12118064 original size:26 final size:26
Alignment explanation
Indices: 12118035--12118087 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12118025 GTTGACTTAG
12118035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12118061 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12118087 G
1 G
12118088 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12118968 original size:26 final size:26
Alignment explanation
Indices: 12118932--12118984 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12118922 GTTGACTTAG
*
12118932 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12118958 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12118984 G
1 G
12118985 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12119751 original size:26 final size:26
Alignment explanation
Indices: 12119715--12119767 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12119705 GTTGGCTTAG
*
12119715 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12119741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12119767 G
1 G
12119768 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12122418 original size:864 final size:861
Alignment explanation
Indices: 12119741--12123089 Score: 4497
Period size: 856 Copynumber: 3.9 Consensus size: 861
12119731 CCTAGTCTAA
** * *
12119741 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGACATCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * ** * *
12119806 CTCAGGCATGTGCTGGTGCCGTGTTGTTCTTCGTCGGGGCACCATCACCGGAGAACTTGACCGCC
66 CTCAGGCATGTGCTGGTGCCGCATTGTTCTTCGCCGGGGCACCATCGTCGGAGAACCTGACCGGC
* * * *
12119871 AGCATTGGGGTTCCGGCGGTCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
131 GGCATTGGGGTTCCGACGATCGA-GGGGACGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
12119936 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAGA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
12120001 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAG-AAATGGGGACACTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAATGGGGACACTT
*
12120065 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
12120130 AAAAAATACAAAGATCACGTCTACTAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * * * *
12120195 ATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAAAAAATGACTCATCTTGCCATGAAAC
455 ATCCCGAAACGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* *
12120260 TGCACGTGAAGGCTTAATGGACCATTGTATGAATTTA-ACAGCCATAAAAATGGCATTGGCATGT
520 TTCACGTGAAGGCTTAA-GGGCCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCATGT
* * * * *
12120324 AGAAATATGAAAATTTGCCTACACCCACCTATCACCCTATCGATTCACGGCTTGCGCATCCCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
12120389 TCTCTGGCAGACGTAGT----GCCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGA
648 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * *
12120450 G-TCATTCAAAGTCAAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGA
713 GTTCATTC-TAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGA
* * * * ** *
12120514 GGGGGACCTGACCGATCCTTGGCTTACGCATCCCG-CCCTACTGGCTGGCTGAGTGCCCGCGCAC
777 GGGGGACCCGACCGATCCTTGGCTTGCGCATCCCGCCCCT-CTGGCCGGTTGAGCACCCGCACAC
**
12120578 TCGTTTTATTGGTTGACTTAG
841 TCGTTTCGTTGGTTGACTTAG
* * * *
12120599 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12120664 CTCAGGCATGTGCTAGTGCAGCATTGTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACTGGC
66 CTCAGGCATGTGCTGGTGCCGCATTGTTCTTCGCCGGGGCACCATCGTCGGAGAACCTGACCGGC
* * * * * * *
12120729 GGTAGTGCGGTTCCGACGATC-AGGGGACCGGGGGGTGTGCCCCCATGATGTGCGATGGATGCTG
131 GGCATTGGGGTTCCGACGATCGAGGGGACGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
12120793 GTACTTGGCCCTTACATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTACAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
12120858 AGCAGTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAG-AGTCTGAAAATGGGGACATTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTA-TCTGAAAATGGGGACACTT
* *
12120922 TTTTCGAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
12120986 CAAAAATACAGGGATCACCTATACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAGAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* *
12121051 ATCTCG-AACTGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
455 ATCCCGAAAC-GTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
* *
12121115 CTTCAGGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
519 CTTCACGTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
* * * *
12121180 AGAAAAATGAAGATGTACCTAAACCCACCAACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
12121245 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATATGGA
648 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* *
12121310 GTTCATTCTCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAACATCGACAGCACGCAGA
713 GTTCATTCT-AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGA
* *
12121375 GGGGGACCCGACCGATCCTTGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCACCCACACACT
777 GGGGGACCCGACCGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACACT
12121440 CGTTTCG-TGAGTTGACTTAG
842 CGTTTCGTTG-GTTGACTTAG
* * * * *
12121460 GCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGACCAAAGGTTGCGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * *
12121525 CTTGGGCATGTGCTGATGCCGCATTTTTCTTCGCCTGGGCACCGTCGTCGGAGAACCTGACCGGT
66 CTCAGGCATGTGCTGGTGCCGCATTGTTCTTCGCCGGGGCACCATCGTCGGAGAACCTGACCGGC
* ** * *
12121590 GGCATTGGGGTTTCGACGATCGGAGGGG-CTAGGGGGTGTGCGCAAATGATGTGTGATGGGTGCT
131 GGCATTGGGGTTCCGACGATC-GAGGGGACGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* **
12121654 GGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
12121719 GAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTATCTG-AAATGGGGACACTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAATGGGGACACTT
*
12121783 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
12121848 CAAAAATCCAAGGATCACGTC-ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * *
12121912 ATCCCGAAACGTAAAAAGTTTCCAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATAAAAC
455 ATCCCGAAACGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* * *
12121977 TTCACGTGAAGGGTTAAGGGCCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGGATGTAG
520 TTCACGTGAAGGCTTAAGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
* * *
12122042 AAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGGTTGTGCATCCCGTCTC
585 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
12122107 TCTGGGCGACGTAGTGCCTGCCCGCCCGCCTGTCCGCTCGTTTCATC-ATTCGACTTAGGCATAC
650 TCTGGCCGACGTAGTGCCCGCCCGCCCG-C---CCGCTCGTTTCGTCGGTT-GGCTTAGGCATAC
* * * * * *
12122171 GGAGTTCATTCGTAGTCTAAGATTACACCGGACTGAGGGTTGCGGTAGTAAGATCGGCAGCACAC
710 GGAGTTCATTC-TAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGC
* * ** * *
12122236 AGAGCGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACTCGTAC
774 AGAGGGGGACCCGACCGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCAC
* * *
12122301 GCTCATTTCGTTGTTTGACTTAG
839 ACTCGTTTCGTTGGTTGACTTAG
* * * **
12122324 GCATACGGAGTTCATTCGCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12122389 CTC-GAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGAAG
66 CTCAG-GCATGTGCTGGTGCCGCATTGTTCTTCGCCGGGGCACCAT---C---G--T---CGGAG
* * * *** *
12122453 AACCTAATCGACGGCATTGGGGTTCCGGTAATCG-GGGGGCGGGGGGGTGTGCGCACATGATGTG
119 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGACGGGGGGGTGTGCGCACATGATGTG
* **
12122517 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTGC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12122582 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAATGTCTGAAAA
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAA
*
12122646 TGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12122711 GTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
379 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * ** * * * *
12122776 AATGTTAACAAATCCCGAACCACAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTCT
444 AATTTTAAAAAATCCCGAAACGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCT
*
12122841 TGCCATGAAACTTCACGTGAAGGCTTAAAGGGCCATTGTATGAATTTACAAGCCATAAAAATGTC
509 TGCCATGAAACTTCACGTGAAGGCTT-AAGGGCCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12122906 ATTGGGATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGC
573 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12122971 GCATCCCGTTTCTCTGGCCGGCATAGTGCCCGCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGC
638 GCATCCCGTCTCTCTGGCCGACGTAGTG--C-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
12123036 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
700 TTAGGCATACGGAGTTCATT-CTAGTCTAAGATCAGACCGGACTGAGGGTTGCG
12123090 ACAGTACATA
Statistics
Matches: 2190, Mismatches: 255, Indels: 75
0.87 0.10 0.03
Matches are distributed among these distances:
855 4 0.00
856 413 0.19
857 45 0.02
858 130 0.06
860 172 0.08
861 406 0.19
862 187 0.09
863 9 0.00
864 244 0.11
865 3 0.00
867 1 0.00
870 1 0.00
872 1 0.00
873 59 0.03
874 180 0.08
875 198 0.09
876 126 0.06
878 2 0.00
879 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (861 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTGTTCTTCGCCGGGGCACCATCGTCGGAGAACCTGACCGGC
GGCATTGGGGTTCCGACGATCGAGGGGACGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
TCCCGAAACGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGG
GACCCGACCGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACACTCGTT
TCGTTGGTTGACTTAG
Found at i:12125783 original size:706 final size:712
Alignment explanation
Indices: 12123935--12126004 Score: 2971
Period size: 706 Copynumber: 2.9 Consensus size: 712
12123925 CCCAGTCGGA
* * *
12123935 GCATACAGAGTTCATTCGCAGTCTAAGATCGGAAT-GGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACCGAGTTCATTC-CAGTCTAAGATCGG-ATCGGACCGAGGGTTGCAGCAGCACATGTTGG
* * * * *
12123999 CCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCA-CATCGCCGAAGCATCATCGGAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * ** * * *
12124063 AACCTGACCGACGGTATTGGGGTTCCGATGATCGGGTGGGCCAGAGGGGATGTGCGCACATGATG
129 AACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
* *
12124128 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12124193 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAA
* * * *
12124258 ATGGGGACAGTTTTTTCAAATGATCACAAAATCCTATACACTTCTAGTTTTTAGCTGAATTTTTT
323 ATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* * * * *
12124323 TGTGCATGCCAACATAAATAAAAGAATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* **
12124388 AAATTTTAAAAAATCTCAAATCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12124453 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
12124518 CATTGGCACGCAGAAATATGAAGATGTACCTAAACGCACCTACCACCCTATCGATCCATGGGTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
* ** *
12124583 TGCATCCCATCTCTATGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGTTCGTTTCGTCGGTTG
648 TGCATCCCATCTCTATAGCCGACGTAGT---CACCCG-CCGCCTG-CCG-TCGTTTCGTCGGTTG
12124648 GCTTAG
707 GCTTAG
* *
12124654 GCATATCGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCAGCAGCACATGTTGG
1 GCATACCGAGTTCATT-CCAGTCTAAGATCGGATC-GGACCGAGGGTTGCAGCAGCACATGTTGG
* * * * *
12124718 GCTCGGGCATGTGCTGGTGCCACATTTTT-TTCGTTGGGGCACCATCACCGGAGCATCGCCGGAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
12124782 AACCTGACCGATGACATTGGGGTT-TCGGCGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATG
129 AACCTGACCGACGGCATTGGGGTTCT-GGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * * *
12124845 TGCGATGGGTGCTGGTAGTTGGCCCTTTTTTTGGCCCCCTATCCCTCGTCAGACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
12124910 ACAACCCCTTAAAGTGCGTTTGAGATTTTATAGGTTTG-TTGCCAGTAGCCATTAAAGTGTCTAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTT-CCAGTAGCCATTAAAGTGTCTAA
*
12124974 AATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTT
322 AATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
* * *
12125039 TTGTGCATGCCAACAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTTCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* *
12125104 AAAA-TTTAAAAAATCTCGAACCGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
12125168 CTTGCCAAGAAACTTCACGCGATGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12125233 GCATTGGCACGTAGAAATATGAAGATGCGCCTAAACCCACTTGCCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
12125298 ATGCATCCCATCTCTCTAGCCGACGTAGT-ACCCG-C-CC-G-C-TCGTTTCGTCGGTTGGCTTA
647 ATGCATCCCATCTCTATAGCCGACGTAGTCACCCGCCGCCTGCCGTCGTTTCGTCGGTTGGCTTA
12125357 G
712 G
* * *
12125358 GCATACCGAGTTCGTTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATTTTGGG
1 GCATACCGAGTTCATTCC-AGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGTTGGG
* * **
12125423 CTCGAGCATGTGCTGGTGCCGTATTTTTCCTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
*
12125488 ACCTGACCAACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
12125553 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
12125618 ACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTTCCAATAGCGATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAAT
* * * *
12125683 AGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
** * *
12125748 TGCACACCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * ** *
12125813 ATTTTAAAAATTCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12125878 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAGAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12125943 TTGGCATGCAGAAATATGAAGATGTGTCTAAACTCACCTACCACCCTATCGATCCACGGCTT
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
12126005 GCGCAGTCGG
Statistics
Matches: 1202, Mismatches: 136, Indels: 38
0.87 0.10 0.03
Matches are distributed among these distances:
703 2 0.00
704 101 0.08
705 65 0.05
706 258 0.21
707 172 0.14
708 1 0.00
709 2 0.00
710 1 0.00
712 4 0.00
716 197 0.16
717 257 0.21
718 12 0.01
719 129 0.11
720 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (712 bp):
GCATACCGAGTTCATTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGTTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATG
GGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTATGC
ATCCCATCTCTATAGCCGACGTAGTCACCCGCCGCCTGCCGTCGTTTCGTCGGTTGGCTTAG
Found at i:12126318 original size:166 final size:166
Alignment explanation
Indices: 12126040--12126340 Score: 435
Period size: 166 Copynumber: 1.8 Consensus size: 166
12126030 TCATGCCTGA
* ** *
12126040 CCGTCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 CCGTCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGAT
* * * * *
12126105 TAGACTGAACCAAGGGTTACGGTAGTAGGATCGGCAGCATGCAGAGGGGGA-CTGGTCGATCCTC
66 TAGACTGAACCAAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCC
12126169 GGCTTACGCATCCTGTCTCTCTGACTGACATAGTGC
131 GGCTTACGCATCCTGTCTCTCTGACTGACATAGTGC
*
12126205 CCGTCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCCACTCTAAGA
1 CCGT-CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGA
* ** * *
12126270 TTGGACCTGAA-GGAGGGTTGCGGCAGCAGGATCGGCAGCGCGCAGAGGGGGACCCGGTCGATCC
65 TTAGA-CTGAACCAAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
12126334 CCGGCTT
129 CCGGCTT
12126341 GTGCATCCCG
Statistics
Matches: 118, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
165 4 0.03
166 93 0.79
167 21 0.18
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (166 bp):
CCGTCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGAT
TAGACTGAACCAAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCC
GGCTTACGCATCCTGTCTCTCTGACTGACATAGTGC
Found at i:12126427 original size:159 final size:161
Alignment explanation
Indices: 12126042--12126427 Score: 429
Period size: 166 Copynumber: 2.4 Consensus size: 161
12126032 ATGCCTGACC
* *
12126042 GTCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTA
1 GTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTA
* * * * *
12126107 GACTGAACCAAGGGTTACGGTAGTAGGATCGGCAGCATGCAGAGGGGGACTGGTCGATCCTCGGC
66 GACTGAACCAAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGGTCGATCCCCGGC
* * * * *
12126172 TTACGCATCCTGTCTCTCTGACTGACATAGTGCCC
131 TTACGCATCCCGCCCCTCTGACCGAC--A-TG-CA
* * *
12126207 GTCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCCACTCTAAGATT
1 GT-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* ** * *
12126272 GGACCTGAA-GGAGGGTTGCGGCAGCAGGATCGGCAGCGCGCAGAGGGGGACCCGGTCGATCCCC
65 AGA-CTGAACCAAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGTCGATCCCC
** * *
12126336 GGCTTGTGCATCCCGCCCCTCTGGCCGGC-TG-A
128 GGCTTACGCATCCCGCCCCTCTGACCGACATGCA
* * * *
12126368 GT-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAG
1 GTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
12126428 CATGTGGAGT
Statistics
Matches: 187, Mismatches: 31, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
159 51 0.27
161 2 0.01
163 2 0.01
165 2 0.01
166 93 0.50
167 37 0.20
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (161 bp):
GTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTA
GACTGAACCAAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGGTCGATCCCCGGC
TTACGCATCCCGCCCCTCTGACCGACATGCA
Found at i:12127330 original size:26 final size:26
Alignment explanation
Indices: 12127294--12127346 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12127284 GTTGACTTAG
*
12127294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12127320 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12127346 G
1 G
12127347 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Done.