Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24162007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 47000 characters in sequence are not A, C, G, or T
File 61 of 131
Found at i:12127914 original size:872 final size:872
Alignment explanation
Indices: 12126209--12128739 Score: 3149
Period size: 872 Copynumber: 2.9 Consensus size: 872
12126199 TAGTGCCCGT
* *
12126209 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCCACTCTAAGATTGG
1 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * * ** * *
12126274 ACCT-GAAGGAGGGTTGCGGCAGCAGGATCGGCAGCGCGCAGAGGGGGACCCGGTCGATCCCCGG
66 A-CTAG-ACGAGGGTTGCGGCAGCAAGATCGGTAGCAAGCAAAAGGGGACCCGGTCGATCCCCGG
* *
12126338 CTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
12126403 ATACGGAGTTCATTCTCAGTCTAAGCATGTGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
194 ATACGGAGTTCATTCCCAGTCTAAGCAT-AGGAGTTCATTCCCAATCTAAGATCGGATCAGACCG
* * * *
12126468 AGGGTTGCGACAGCACATGCTGGGCTCAGCATGTGCTGGTGCGGCATTTTTCTTCGTCGGGGCAC
258 AGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTCGTGCCGCATTTTTCTTCGTCGGGGCAC
* ** * ** * * *
12126533 CATCACCGAAGCATCACCAGAGAACCTGACCGGTGGCATTTTGGTTTCGACGATCGGGTGGGTCG
323 CATCACCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGCGGGCCG
* * *
12126598 GGGGGTGTGCGCACATGATGTACGATGGTTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCC
388 GGGGGTGTGCGCACATGATGT-TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CC
* * *
12126663 TCATCAAACCTCAAGAACTCACACCCCTTAAGGAGCATTTGAGATTTTAAAGGGTTGCTGCCAGT
451 -C-TC--A--TC---AA---ACA---C--AA-GAGCATTTGAGATTTTACAGGTTTGCTGCCAAT
*
12126728 AGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
498 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
12126793 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTACTAAGGTTGGG
563 GTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAA-GTTGGG
*
12126858 GCCAAAACTCCTTT-CAAAAAAATTTTAAAAAATCCCGAACCT-CAAAAAGTTTTGAAAATCGTG
627 GCCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCCCGAA-CTGCAAAAAGTTTTGAAAATCGTG
*
12126921 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGA
690 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGA
* * *
12126986 ATCTACAAGCCATAAAAATGGAATTGGCACACAGAAATATGAAGATGTGCCTAAACCTACCTACC
755 ATTTACAAGCCATAAAAATGGAAGTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
12127051 ACCCTATCGATCCATGACTTGCACATCCCATTTCTCTGGCCAGCGTAGT-GC-
820 ACCCTATCGATCCACGACTTGCACATCCCATCTCTCTAGCCAGCGTAGTGGCG
** **
12127102 CCGCCCGCCCATTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
1 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * *
12127167 ACTAGATCGAGGGTTCCGGCAGCAAGATCGGTAGCATGCAAAAGGGGACCCGATCGATCCCCGGC
66 ACTAGA-CGAGGGTTGCGGCAGCAAGATCGGTAGCAAGCAAAAGGGGACCCGGTCGATCCCCGGC
* * *
12127232 TTGCGCATCTCACCCCTCTGGCCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
12127297 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGA
195 TACGGAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAATCTAAGATCGGATCAGACCGA
* * * **
12127362 GGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTCGTGCCACATTTTTCTTTGTCGGGGTTC
259 GGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTCGTGCCGCATTTTTCTTCGTCGGGGCAC
** *
12127427 CATCGTCGGAGCATCACTGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGAGG-GGGCC
323 CATCACCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGCGGGCC
* *
12127491 GGGGGGTGTGCGCACTTGATGTGTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCC
387 GGGGGGTGTGCGCACATGATGT-TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
12127556 CTCATC-AA-A-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGA
451 CTCATCAAACACAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGA
* * * * *
12127618 AATGAGGACACTTTTTTCAGATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTT
516 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* **
12127683 TTATGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTATGGGGTGAAAACTCTTTCCGAA
581 TTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGT-TGGGGCCAAAACTCTTTCCGAA
* ** *
12127748 AAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
645 AAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
12127813 CTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACATGCCATAAAAATG
710 CTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATG
* *** *
12127878 GCAGTGGCATGTAGAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
775 GAAGTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * * * *
12127943 GCGCATCTCGTCTCTCTAGCCGGCTTAGTGGCTG
840 GCACATCCCATCTCTCTAGCCAGCGTAGTGGC-G
*
12127977 CCTGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
1 CC-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
* * * * * *
12128042 GACCAGACTGAGGGTTGTGGTAGTATGATCGGTAGCAAGC-AGAGAGGGACCCGGTCGATCCCCG
65 GACTAGAC-GAGGGTTGCGGCAGCAAGATCGGTAGCAAGCAAAAG-GGGACCCGGTCGATCCCCG
* * * * * *
12128106 GCTTGCGCGTCCCGCCCTTCTGGCTGGCTGAGCACCCGCACGTTCGTTTTGTGGGTTGACTTAGG
128 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
12128171 CATATGGAGTTCATTCCCAG--T---C-TA--AG----------A--T----T-GGACCAGACCG
193 CATACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCAATCTAAGATCGGATCAGACCG
* *
12128211 AGGGTTGCGGCAGCACATACTGGGCTAAGGCATGTGCTCGTGCCGCA-TTTTCTTCGTCGGGGCA
258 AGGGTTGCGGCAGCACATGCTGGGCT-CGGCATGTGCTCGTGCCGCATTTTTCTTCGTCGGGGCA
* * * *
12128275 CAATCACCGGAGCATC-GTCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGCGGGC
322 CCATCACCGGAGCATCACT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGCGGGC
*
12128339 CGGGGGGGTGTACGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
386 C-GGGGGGTGTGCGCACATGATGTT-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
12128404 CCCTCATCAAACCTTGAGAACTCCCACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTAC
449 CCCTCAT-----C---A-AA----CA----C--A-AGAGCATTTGAGATTTTACAGGTTTGCTGC
*
12128469 CAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACT
494 CAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
12128534 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACT-TCTACCAAGT
559 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCA-TGTCTACCAAG-
* * * * * *
12128598 TTGGGGCCAAAACTCCTTCTGAAAAACTTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATG
622 TTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATC
*
12128663 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
687 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTA
12128728 TGAATTTACAAG
752 TGAATTTACAAG
12128740 TGTGGGAAAA
Statistics
Matches: 1440, Mismatches: 154, Indels: 108
0.85 0.09 0.06
Matches are distributed among these distances:
848 3 0.00
849 68 0.05
850 117 0.08
851 1 0.00
855 2 0.00
857 1 0.00
860 2 0.00
865 1 0.00
867 2 0.00
870 2 0.00
871 9 0.01
872 355 0.25
873 278 0.19
874 3 0.00
875 6 0.00
876 181 0.13
879 1 0.00
880 1 0.00
883 1 0.00
887 2 0.00
889 1 0.00
891 2 0.00
892 4 0.00
893 257 0.18
894 138 0.10
895 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
ACTAGACGAGGGTTGCGGCAGCAAGATCGGTAGCAAGCAAAAGGGGACCCGGTCGATCCCCGGCT
TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGG
GTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTCGTGCCGCATTTTTCTTCGTCGGGGCACCAT
CACCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGCGGGCCGGGG
GGTGTGCGCACATGATGTTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACACAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTGGGGCCAAAACTCTTTCCGAAAAAATT
TTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGAAGTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCACAT
CCCATCTCTCTAGCCAGCGTAGTGGCG
Found at i:12133706 original size:22 final size:23
Alignment explanation
Indices: 12133661--12133706 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
12133651 AATCTGTATA
12133661 AATTTGTATCTCCCTAAAATTAAG
1 AATTTGTATCT-CCTAAAATTAAG
*
12133685 AATTTGTATCT-CTAGAATTAAG
1 AATTTGTATCTCCTAAAATTAAG
12133707 GACAGAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.48
24 11 0.52
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (23 bp):
AATTTGTATCTCCTAAAATTAAG
Found at i:12135120 original size:26 final size:26
Alignment explanation
Indices: 12135090--12135149 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
12135080 GTTAACTTAG
*
12135090 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCAAGTCTAA
*
12135116 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGACTTCATTCCAAGTCTAA
12135142 G-AT-CGGAC
1 GCATACGGAC
12135150 CAGACCGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 25 0.81
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATTCCAAGTCTAA
Found at i:12135775 original size:909 final size:903
Alignment explanation
Indices: 12133859--12137173 Score: 4003
Period size: 894 Copynumber: 3.7 Consensus size: 903
12133849 TTTTTCCACA
* *
12133859 ACAAGCAATAAAAATGGCATTGG-AA-CACAGAAATATGAAGATGTACCTAAACCCACCTACCAC
1 ACAAGCCATAAAAATGGCATTGGCAAGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCAC
* ** *
12133922 CCTATCGATCCACGGCTTGCACATCCCACCTCTCTGGCCGGCGTAGTGCTCGCTCGCCTGCCGGT
64 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CTC-CC-G-C---
* * ** *
12133987 CCGCCCACTCGCCCGTTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCAATCCCAGTCTAAGA
120 CCG-CC-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
* * * *** * *
12134052 TCGGACCGAACCGAGGGTTGCAGCAGTAGGATTGGCAGCACATAGAGGGTGACCCGATCGATCCC
182 TCAGACCGAA-CGAGGGTTGCAGCAGCAGGATCGGCAGCATGCAGAGGGGGA-CCGGTCGATCCC
* * * * * * * *
12134117 CCGCTTGCACATCCCGTCGCTCTGGCCGACTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTA
245 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTA
* * * * * *
12134182 GGCATACAGAGTTCATTCCCAGTCTAAACATACGAAGTTCATTC-CCAGTCTAAGATCGGACCGG
310 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAAGTCTAAGATCAGACCAG
* * ** * * **
12134246 ACCGAGGGTTGCGGCAGCACATGCGGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGG
375 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCAGTATTTTTCTTCACCGG
* * *
12134311 GGCACCATCGGA-GGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTTCGGCGATC-GGG
440 GGCACCATC-GACGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGG
**
12134374 GGGCCT-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGAACCC
504 GGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
12134438 CTATCCCTCAACAAACCTTAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
569 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
12134503 CTGCCAGTAGCCATTAAAGTGTCTGAAATAAGGACTCTTTTTTCAAATGGTCACAAAATCTTGTA
634 CTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
12134568 CACTTCGATTTTTTAGATGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCA
699 CACTTCGAGTTTTTAGATGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * ** * *
12134633 AGTTTGGGGCAAAAAATCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAA
764 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTAAAA
* * * * *
12134698 ATCGTGCAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTAAT
829 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
12134763 GTATGAATTT
894 GTATGAATTT
* ** * *
12134773 ACAAGCCATAAAAATGGCATTGACACCCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCC
1 ACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
12134838 AATCGATCCAAGACTTGCGCATCCCGTCTCTCTGACCGACGTAGTGCCCTCCCGCCCGCCCCGCC
66 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCTCCCGCCCGCCCCG--
* * *
12134903 CACCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCACTTTAAGATCAGACCGG
128 --CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-G
* ** *
12134968 AAGGAGGGTTGTGGCAGCAGGATCGGCAGCATGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
190 AACGAGGGTTGCAGCAGCAGGATCGGCAGCATGCAGAGGGGGA-CCGGTCGATCCCCGGCTTGCG
* * * * *
12135033 CATCCTGCCCCTCTGGCCGGCTGAGTGGCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGG
254 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGG
* *
12135098 ACTTCATTCCCAGTCTAAGCATACGGAGTTCATTC-CAAGTCTAAGATCGGACCAGACCGAGGGT
319 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAAGTCTAAGATCAGACCAGACCGAGGGT
* * * *
12135162 TGCGGCAGCACATGCTAGGCTCGGGCATGTACTGGTGCAGTATTTCTCCTCACCGGGGCACCATT
384 TGCGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCAGTATTTTTCTTCACCGGGGCACCATC
* * * *
12135227 GTCGGAGCATCATCGGAGAACCTGACCGGCGGCAATGGGGTTTCGGC-AGCCGGGGGGGCCTGGG
449 GACGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGA-TCGGGGGGGCCTGGG
* * *
12135291 GGGTGTGCGCACATGATGTACGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTC
513 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
12135356 ATCAAACCTCAAGAACTCACGCCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
578 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
12135421 GCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
643 GCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
12135486 TTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAAAAAGATCACGTCTACCAAGTTCGGGG
708 TTTTTAGATGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
12135551 CCAAAACTCCTTCCGAAAAAATTTTAAGAAATCCCGAACAGTAAAAAGTTTTGAAAATCGTGAAA
773 CCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTAAAAATCGTGAAA
12135616 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
838 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
12135681 T
903 T
* *
12135682 ACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATATGCCTAAACTCACCTACCACCC
1 ACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * ** *
12135747 TATCGATCCACGGCTTACGCAGCCCGTCTCTCAGGTCGGTGTAGTGCCT---GACCG-CCCG---
66 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCCCGCCCGCCCCGCCC
* * * * *
12135805 G-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCCTATCGA
131 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACGA
* * * *
12135869 GGGTTGCAGCAGTAAGATCGACAGCATGCAGA-GGGGACCGGTCGATCCCCGGCTTGGGCATCCC
195 GGGTTGCAGCAGCAGGATCGGCAGCATGCAGAGGGGGACCGGTCGATCCCCGGCTTGCGCATCCC
* * *
12135933 GCCCCTTTCGCCGGCTGAGCGCCCGCACGCTCATTTCACGGGTTGACTTAGGCATACGGAGTTCA
260 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * * ** *
12135998 TTCCCAGTCTAAGCATACAGAGTTTATTCTCAA-TCTAAGATCAGATCAGACTGACAGTTGCGGT
325 TTCCCAGTCTAAGCATACGGAGTTCATTCTCAAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
* *** *
12136062 AGCACATGCTGGGCTCGGGCATGTCCTGGTGCCA-TATTTTTCTTTGTCGGGGCACCATCGCCGG
390 AGCACATGCTGGGCTCGGGCATGTACTGGTG-CAGTATTTTTCTTCACCGGGGCACCATCGACGG
* ** ** * * * ** *
12136126 AGCATCACCAGAGAACCTGACCGGTAGCATTTTGGTTCCGACGATCGGGTGGATCGGGGGGGTGT
454 AGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCTGGGGGGTGT
* * * * *
12136191 ACGCACATGATGTGCGATGGTTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCTCTCGTCAAA
519 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
12136256 ACTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
584 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
12136321 AAAGTGT-TCGAAAT-GAGGACACTTTTTTCAAATGATCACAAAATTTTGCACACTTTGAGTTTT
649 AAAGTGTCT-GAAATAG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
12136384 TGGTTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
712 TAGATGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * *
12136449 ATCTCCTTCTGAAAGCAA-TTTAAAAAATCCCGAACCA-CAAAAAGTTTCAGAAATCATGAAAAA
777 AACTCCTTCTGAAA-AAATTTTAAAAAATCCCGAA-CAGTAAAAAGTTTTAAAAATCGTGAAAAA
*
12136512 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
840 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
12136576 ACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
1 ACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * *
12136641 TATCGATCCACGGCTTGCGTTTCCCGTCTCTCTGG-CTAGCGTAGTG---CCCGCCC-ACCCGCC
66 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCTCCCGCCCGCCCCGCC
* * * *
12136701 CGCTCATTTCGTCGGTTGGCTTAGGCGTACAGAGTTCATTCTCAGTCTAAGATCAGACCAGACCG
130 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GAACG
* * *
12136766 AGGGTTGC-GATAGCAGGATCGGTAACATGCAGAGGGGGACC---CGA--------TT--G-AT-
194 AGGGTTGCAG-CAGCAGGATCGGCAGCATGCAGAGGGGGACCGGTCGATCCCCGGCTTGCGCATC
* * * * *
12136815 ------C-CT---CGGCTAAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTT
258 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
* * * * **
12136870 CATTCCCA-TCTAAGCATACGGAGTTCATTCTC-AGTCTAGGATCAGATCGGATCGAGGGTTAAG
323 CATTCCCAGTCTAAGCATACGGAGTTCATTCTCAAGTCTAAGATCAGACCAGACCGAGGGTTGCG
** * *
12136933 ATAGCACATGCTGGGCTCGGGCATGTGA-TGGTGCCGTATTTTTTTTCACCGGGGCACCATC-AC
388 GCAGCACATGCTGGGCTCGGGCATGT-ACTGGTGCAGTATTTTTCTTCACCGGGGCACCATCGAC
* * ** * *
12136996 TGAAGCATCACCGGAGAACCTGACCGGCGGCATTGGTGTTTCGATGATCGGGGCGG-TTGGGGGG
452 -GGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCT-GGGGG
*
12137060 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCAT
515 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
12137125 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
580 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
12137174 ATTTTACAAG
Statistics
Matches: 2087, Mismatches: 278, Indels: 113
0.84 0.11 0.05
Matches are distributed among these distances:
872 3 0.00
873 248 0.12
874 54 0.03
877 1 0.00
878 1 0.00
885 2 0.00
886 1 0.00
888 2 0.00
893 3 0.00
894 685 0.33
895 15 0.01
896 80 0.04
897 7 0.00
898 76 0.04
899 7 0.00
903 2 0.00
904 5 0.00
905 6 0.00
906 5 0.00
907 313 0.15
908 15 0.01
909 454 0.22
910 1 0.00
911 2 0.00
912 3 0.00
913 1 0.00
914 92 0.04
915 1 0.00
916 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
ACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCCCGCCCGCCCCGCCC
GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACGAG
GGTTGCAGCAGCAGGATCGGCAGCATGCAGAGGGGGACCGGTCGATCCCCGGCTTGCGCATCCCG
CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCTCAAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
GCACATGCTGGGCTCGGGCATGTACTGGTGCAGTATTTTTCTTCACCGGGGCACCATCGACGGAG
CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCTGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGA
TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCTGAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
Found at i:12136013 original size:26 final size:26
Alignment explanation
Indices: 12135984--12136036 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12135974 GTTGACTTAG
* *
12135984 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
12136010 GCATACAGAGTTTATTCTCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12136036 G
1 G
12136037 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12140642 original size:899 final size:899
Alignment explanation
Indices: 12137176--12140963 Score: 5092
Period size: 899 Copynumber: 4.2 Consensus size: 899
12137166 TTTTACAGAT
*
12137176 TTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
1 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
12137241 CCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGATGTAGTGCCCGCCCGCCCTCTCG
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-C-CG
* * * * *
12137306 CCCGTTTGTTCGTTTCGTCGGTTGGCTTAGGCATACGGGGTTCATTCCCAATCTAAGATCAGATC
127 CCC----GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
12137371 GGACCGAGGGTTGTGGCACCAGGATCGGTAGCATGTAGAGGGGGACCCGACTGAGCCCCGGCTTG
188 GGATCGAGGGTTATGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACTGAGCCCCGACTTG
* * * * * * *
12137436 CGCATCTCGCCCCTTTGGCCAACTGAGCGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATAC
253 CGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
12137501 GGAGTTTATTCTCAGTCTAAGCAGACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGTGGG
318 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC-GAACCGAGGG
* * *
12137566 TTGCGACAGCACATG-TCGAGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA
382 TTGCGGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA
* * * *
12137630 TCGTCGGAGCATCACC-AGAGAAACTGACCGACGACATTAGGGTTCCGACGATCGAGGGGGCCGG
446 TCATCGGAGCATCGCCGAGAGAACCTGACCGACGACATTAGGGTTCCGATGATCGAGGGGGCCGG
** *
12137694 AGGGGTGTGCGCAC-TCGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCC
511 -GGGGTGTGCGCACAT-GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
12137758 CTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCAATTGAGATTTTATAGGTTTGATGCCA
574 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
12137822 GTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
639 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
**
12137887 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGA-AAAAATACAAGGAAAACGTCTACCAAGTTT
704 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
12137951 GGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAAT-CCGAAACAGTAAAAAGTTTCAAAAATCA
768 GGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCG-AACCGCAAAAAGTTTCAAAAATCA
* *
12138015 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTAT
832 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
12138080 GAA
897 GAA
* *
12138083 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
1 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
12138148 CCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCAACATAGTGCCCGCCCGCCCGCACG
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * * *
12138213 TTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGATCGAT
131 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAG
* * * * *
12138278 GGTTGTGGTAGTAGGATTGGTAGCATGCAGAGGGGGACCCGACCGAGCCCCGACTTGCGCATCCC
196 GGTTATGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACTGAGCCCCGACTTGCGCATCCC
** *
12138343 GCCCCTCTAGCCGACTGAATGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
261 GCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
12138408 TTCCCATTCTAAGCATAC-AGAGTTCATTCCCAGT-TAAGATCGGACCCG-ACCGAGGGTTGCGG
326 TTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGA--CGAACCGAGGGTTGCGG
* * * *
12138470 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGG
388 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGG
* * * * *
12138535 AGCATCG-CTAGAGAACCTG-CCCAGTGGCATTGGGGTTCCGATGATCG-GGGGGCCGGGGGGTG
453 AGCATCGCCGAGAGAACCTGACCGA-CGACATTAGGGTTCCGATGATCGAGGGGGCCGGGGGGTG
* *
12138597 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATGCCTCATCAA
517 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
12138662 ACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAT
582 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
12138727 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTT
647 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
12138792 AGCTGAATTTTTTTGTGCATAG-CAAAAAAAATACAAGGATCATGTCTGCCAATTTTGGGGCCAA
712 AGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * **
12138856 AACGCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAATTTGTGAAAAATA
776 AACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* *
12138921 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGATGGCTTAAGGCACCATTGTATGAA
841 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** * * * *
12138980 TTTACAAGTGATATAAATGGCATTGGCATGCTGAAATATGAATATGTGCTTAAACCCACCTACCA
1 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
12139045 CCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGACCGGCGTAGT----GCCCGCCCGCTCG
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * **
12139106 CTCGTTTCGTCGGTCGGCTTAGGCATACAGAGTTCTTTCCCAGTCTAAGAT-GAGACTAGATCGA
131 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCGGATCGA
* * * * * *
12139170 GGGTTACGGCAGCAGGATCAGCAGCATGCAGAGGGGAACCCGA-TCGATCCCCGACTTGTGCATC
195 GGGTTATGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACT-GAGCCCCGACTTGCGCATC
* * * * *
12139234 CCGCCCCTCTGGTCGGCTGAGCGCCCACACGCTCGTTACGTGGGTTGACTTAGGCATACGGAGTT
259 CCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * *
12139299 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCGAAGATCAGACCAGGCTGAGGGTTGCGG
324 CATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACGA-ACCGAGGGTTGCGG
* * * * * *
12139364 TAGCACTTGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGAACCATCAACGG
388 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGG
* * * *
12139429 AGCATCGTCG-GAGAACCTGACCGACGACATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGGTG
453 AGCATCGCCGAGAGAACCTGACCGACGACATTAGGGTTCCGATGATCGAGGGGGCC-GGGGGGTG
* *
12139493 TGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
517 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
12139558 ACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTAAGATTTTGCAGGTTTGCTGCCAGTAG-CAT
582 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * * *
12139622 TAAAGTTTCTAAAATGGAGACACGTTTTTCAAATGGTCACAAAATATTGTACACTTCGATTTTTT
647 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
12139687 AGCTGAATTGTTTTGTGCATGCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCCAA
712 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
12139752 ACTCCTTTCGAAAAATTTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAG
777 ACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
*
12139817 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
842 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
12139875 TTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTGCCCAAACCCACCTACCA
1 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
** * * *
12139940 CCCTATCGATCCACGGCTTGCGCATCCTATCTCTCGGGCCGACGTAGTGCCCGCCCACCAGCCCG
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * * *
12140005 CTCGTTTCGTCGGTTGGCTTAGGCATGCAGAGTTCATTCCTACTCTAAGATTGGACCGGA-CAGA
131 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GA
* * * * * * * * * ** * *
12140069 GGGTTATGACAACAGGACCGGTAGCACGTAGAGGGGCACCGGGCTGATCCCCGGTTTGCACATTC
195 GGGTTATGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACTGAGCCCCGACTTGCGCATCC
* * * * * *
12140134 CGCCCCTCTAGCCGGCTGAGCGTCTGCATGCTCGTTTCGTGTGTTGACTTAGGCATACGAAGTTC
260 CGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** *
12140199 ATTCCCAGTC-AAGCATACGAAGTTCATTCCCAATCTAAGATTGGATCGAACCGAGGGTTGCAGC
325 ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CGAACCGAGGGTTGCGGC
* * *
12140263 AGCACATGCTGGGCTCGGGCATGTGCTGGTCCCGTATTTTTCTTCGA-CGGGGCACCATCACCGG
389 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGGGCACCATCATCGG
* * *
12140327 AGCATCGCCGA-AGAACCTGACCGGCGGCATTAGGGTTCCGATGATCGAGGGGGCTGGGGGTGTG
453 AGCATCGCCGAGAGAACCTGACCGACGACATTAGGGTTCCGATGATCGAGGGGGCCGGGGG-GTG
*
12140391 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAA
517 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
12140456 ACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT
582 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
12140521 TAAAGTGTCTAAAATGGGGATACTTTTTTCAAATGGTCACAATATCTTGTACACTTCGAGTTTTT
647 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
12140586 AGCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAA
712 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * * * *
12140651 ACCCCATT-CAAAAAAGTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATA
777 ACTCC-TTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* *
12140715 GAAAATGAGTCATCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAA
841 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
12140774 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTATCA
1 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
12140839 CCCTATCGATCCACGACTTGCGTATCCCATCTCTTTGG-CTAGCGTAGTGCCCGCTCGCCCGCCT
66 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCG-C-
* *
12140903 GCCTGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
128 -CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
12140964 AGACCGAGGG
Statistics
Matches: 2539, Mismatches: 302, Indels: 84
0.87 0.10 0.03
Matches are distributed among these distances:
892 2 0.00
893 206 0.08
894 112 0.04
895 340 0.13
896 205 0.08
897 391 0.15
898 387 0.15
899 717 0.28
900 6 0.00
902 2 0.00
903 54 0.02
904 1 0.00
905 1 0.00
907 115 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAG
GGTTATGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACTGAGCCCCGACTTGCGCATCCC
GCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACGAACCGAGGGTTGCGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGC
ATCGCCGAGAGAACCTGACCGACGACATTAGGGTTCCGATGATCGAGGGGGCCGGGGGGTGTGCG
CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
Found at i:12141238 original size:706 final size:702
Alignment explanation
Indices: 12140211--12141674 Score: 2045
Period size: 706 Copynumber: 2.1 Consensus size: 702
12140201 TCCCAGTCAA
* *
12140211 GCATACGAAGTTCATTCCCAATCTAAGATTGGATC-GAACCGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAG-ACCGAGGGTTGCAGCAGCACATGCTGG
* **
12140275 GCTCGGGCATGTGCTGGTCCCGTATTTTTCTTCGACGGGGCACCATCACCGGAGCATCGCCGAAG
65 GCTCGGGCATGTGCTGGTCCCGCATTTCCCTTCGACGGGGCACCAT---C----CATCG-CGAAG
* ** *
12140340 AACCTGACCGGCGGCATTAGGGTTCCGATGATCGAGGGGGCTGGGGGTGTGTGCGCACATGATGT
122 AACCTGACCGACGGCATTAGGGTTCCGATGATCGAGGGGGCCAGGGGTGTGTGCGCACATGATAT
* *
12140405 GCAATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
187 GCAATGGGTGCTGGAACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCA
*
12140470 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAA
252 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAA
* * * * *
12140535 TGGGGATACTTTTTTCAAATGGTCACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
317 TGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTAAACTTCAAGTTTTTAGCTGAATTTTTTT
* *
12140600 GT-TCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACCCCATT-CAAA
382 GTGT-ATGCCAACAAAAATACAAGGATCACGTCTACC-AGTTTGGGG-CAAAAACCCATTCCAAA
* * * * *
12140663 AAAGTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCAT
444 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
*
12140728 CTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
509 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
12140793 GCATTGGCATGCA-GAA-ATAAGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGAC
574 GCATTGGCA--CATAAACATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
* * * *
12140856 TTGCGTATCCCATCTCTTTGG-CTAGCGTAGTGCCCGCTCGCCCGCCTGCCTGCTCATTTCATCG
637 TTGCGCATCCCATCTCTCTGGAC-AGCATAGTACCCG-TCG---G-CT--C-GCTCATTTCATCG
12140920 GTTGGCTTAG
693 GTTGGCTTAG
* *
12140930 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGC-GTCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCAGCAG-CACATGCTGG
** *
12140993 GCTCGGGCATGTGCTGGTGTCGCATTTCCCTTC-ACCGGGGCACCAT-CATCG-G-AGAACCTTA
65 GCTCGGGCATGTGCTGGTCCCGCATTTCCCTTCGA-CGGGGCACCATCCATCGCGAAGAACCTGA
* * * *
12141054 CCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCAGGGG-GTGTGCGCACATGATATGCGATGG
129 CCGACGGCATTAGGGTTCCGATGATCGAGGGGGCCAGGGGTGTGTGCGCACATGATATGCAATGG
* *
12141118 GTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACTCCCCC
194 GTGCTGGAACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCC
* *
12141183 TTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGAC
*
12141248 ACTTTTTTCAAATGGTCACAAAAACTTGTAAACTTCAATTTTTTAGCTGAATTTTTTTGTGTATG
324 ACTTTTTTCAAATGGTCACAAAAACTTGTAAACTTCAAGTTTTTAGCTGAATTTTTTTGTGTATG
* * *
12141313 CCAACAAAAATACAAGGATCACGTCTACCAGTTTGGGGGAAAAACTCTTTCCAAAAAAATTTTAA
389 CCAACAAAAATACAAGGATCACGTCTACCAGTTTGGGGCAAAAACCCATTCCAAAAAAATTTTAA
* *
12141378 AAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
454 AAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
* *
12141443 AACTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * *
12141508 ATAAACATATGAAGATGTGCCTAAACCCACCTACCATCCTATTGATCCACGGCTTGCGCATCCCG
584 ATAAACATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCA
* * * *
12141573 TCTCTCTGGACGGCATAGTACCTGTCGGCTCGTTCATTTCGTCGGTTGGCTTAG
649 TCTCTCTGGACAGCATAGTACCCGTCGGCTCGCTCATTTCATCGGTTGGCTTAG
* *
12141627 GCATACGGAGTTCATTCCCAGCCTAAGATTGGATCAGACTGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTG
12141675 TGGCAGCAAG
Statistics
Matches: 672, Mismatches: 64, Indels: 39
0.87 0.08 0.05
Matches are distributed among these distances:
697 52 0.08
698 14 0.02
700 2 0.00
701 1 0.00
703 2 0.00
704 13 0.02
705 211 0.31
706 231 0.34
707 43 0.06
708 1 0.00
710 5 0.01
717 2 0.00
718 64 0.10
719 31 0.05
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (702 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTCCCGCATTTCCCTTCGACGGGGCACCATCCATCGCGAAGAACCTGACC
GACGGCATTAGGGTTCCGATGATCGAGGGGGCCAGGGGTGTGTGCGCACATGATATGCAATGGGT
GCTGGAACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACAC
TTTTTTCAAATGGTCACAAAAACTTGTAAACTTCAAGTTTTTAGCTGAATTTTTTTGTGTATGCC
AACAAAAATACAAGGATCACGTCTACCAGTTTGGGGCAAAAACCCATTCCAAAAAAATTTTAAAA
AATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
AAACATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATC
TCTCTGGACAGCATAGTACCCGTCGGCTCGCTCATTTCATCGGTTGGCTTAG
Found at i:12141815 original size:26 final size:26
Alignment explanation
Indices: 12141786--12141838 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12141776 ATTGACTTAG
*
12141786 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12141812 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12141838 G
1 G
12141839 TTCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12142715 original size:26 final size:26
Alignment explanation
Indices: 12142685--12142737 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12142675 GTTGACTTAG
12142685 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12142711 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12142737 G
1 G
12142738 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12142941 original size:896 final size:893
Alignment explanation
Indices: 12140930--12147919 Score: 8704
Period size: 892 Copynumber: 7.9 Consensus size: 893
12140920 GTTGGCTTAG
*
12140930 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAG-ACCGAGGGTTGCGGC-GTCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAG-CACATGCTGG
* ** *
12140993 GCTCGGGCATGTGCTGGTGTCGCATTTCCCTTCACCGGGGCACCA-T---CA--TCGGAGAACCT
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGAGCATCTCGGAGAACCT
* * * * *
12141052 TACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGTGTGCGCACATGATATGCGATG
130 GACCGACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
12141117 GGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACTCCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
12141182 CTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
12141247 CACTTTTTTCAAATGGTCACAAAAACTTGTAAACTTCAATTTTTTAGCTGAATTTTTTTGTGTAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** *
12141312 GCCAACAAAAATACAAGGATCACGTCTACC-AGTTTGGGGGAAAAACTCTTTCCAAAAAAATTTT
390 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACTTT-CAAAAAAATTTT
* * *
12141376 AAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
454 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
12141441 GAAACTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * *
12141506 ACATA-AACATATGAAGATGTGCCTAAACCCACCTACCATCCTATTGATCCACGGCTTGCGCATC
584 ACGCAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * * * *
12141570 CCGTCTCTCTGGACGGCATAGTACCTG-TCG---GCTCGTTCATTTCGTCGGTTGGCTTAGGCAT
648 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * * * * * * *
12141631 ACGGAGTTCATTCCCAGCCTAAGATTGGATCAGACTGAGGGTTGTGGCAGCAAGATTGACTGCAT
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * * *
12141696 GCAGAGGGGGACCCAACTGACCCCCAGCTTGCCCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
778 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * **
12141761 ACGCTCATTTCGTGCATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
12141812 GCATACGGAGTTTATTCCCAATCTAAGTTCGGACTGGACCGAGGGTTACGGCAGCACATGCTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12141877 CTCGGGCATGTACTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCCCTGAAACATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT---TG-AGCATC-TCGGAGA
* * * *
12141942 ACTTGACCGGC-GACATTGGGGTTCCGACGATCGGGGGGGCCGGGCGGGGTGTGTGCACATGATG
126 ACCTGACCGACAG-CATTGGGGTTCCGGCGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATG
12142006 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
188 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12142071 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
253 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
12142136 ATAGGGACTCTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
318 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * * **
12142201 TGTGAATGCCAACCAAAATACAGGGATCACGTCTACAAAGTTTGGGGCCAAAACACTTTCTGAAA
383 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACTTTCAAAAA
* **
12142266 AATTTTAAAAAAT-CTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC-AGGTCGTC
448 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA-GTCGTC
*
12142329 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12142394 CATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
577 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
12142459 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
642 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * **
12142524 A-ACTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGATAGCAGGATCG
707 AGGC-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
* * **
12142588 ACAGCACGTAGAGGGGGACCCGACCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
771 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
12142653 CGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
836 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12142711 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12142776 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT---T-GAGCATC-TCGGAGA
* *
12142841 ACCTGACTGACAGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
126 ACCTGACCGACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
12142905 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTTGAGAACTCACA
191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
12142970 CCCTCGTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12143035 GGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGT
321 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
12143100 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAA
386 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CTTTCAAAAAAA
* * *
12143165 TTTTAAAAAATCTCGAACC--ACAAAAGTTTCCAAAATCGTG-AAAATAGAAAACGAGT-GTCTT
450 TTTTAAAAAATCCCGAACCGTA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
12143226 GCCATAAAACTTCACCGTGAGGGCTTAAGGG-CCATTGTATGGATATAC-AGCCAT-AAAATGGC
514 GCCATGAAACTTCA-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
12143288 ATTGGCAC-CAGAAATATGAAGATGTGCCT-AACCCACC-A-CA-CCTATCGATCTGCGGCTAGC
578 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
**
12143348 AAATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
643 GCATCCCGTCTCTCTGGCCGA-CGTAGTG--C-C-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * **
12143412 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAAACCAAGGGTTGCGGCAGCAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
* * * * * * * * *
12143477 TTGGTAGCATGCAAAGAGGGACCC-AGTCGATCCCCGGCTTACGCATCCTG--CC-CTGGCCGAC
768 TCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
12143538 TGAGCGCACCG-ACG-TCGTTT-GT-GGTTGAC-TAGGCATACGGAGCTTCATT-CCAGTCTAA
832 TGAGCGC-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG-TTCATTCCCAGTCTAA
* * *
12143596 GCATACTGAGTTCATTTCCA-TCTAAGATC-GACCGTAAACCGAGGGTTGC-GAAGGCACATGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG--AACCGAGGGTTGCGGCA-GCACATGCT
* ** *
12143658 -GGCTCGGGCATGT-CT-GT-CTGCATTTTTCTTCATCGGGGCAATCC-CGGAGCAATCAACGGA
63 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC-A-CCATTGAGC-ATC-TCGGA
* * * *
12143718 GAAAACCTGA-CGAC-GCATTGGGATTCCGG-TATC--GGGGGCC-AGGGGT-TGGGCA-A-GA-
124 G--AACCTGACCGACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
** * *
12143773 GTTTGATGGGTGCTGGTACTTGCCCCTTATATTGACCCCCTATCCCTCATCAAA-CTCTGAGAAC
187 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAAC
*
12143837 TCACACACCCTTAAAGAGCATTTGAGGATTTTACAGGTTTGCCTGCCAGTAGCCA-TAAAGTGTC
251 TCACACCCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTG-CTGCCAGTAGCCATTAAAGTGTC
* *
12143901 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGT
314 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
12143966 TTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
379 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-ACTTTC
* ** * * *
12144031 AAAAAAATTTTAAAAAATCCCAAACCACAAAATGTTTCAAAAATCGTAAAAAATAGAAAACGAGT
443 AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
12144096 CGTCTCGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAA
508 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
12144161 ATGGCATTGGCACGCAGAAATATGAAGATGTG-CTAAACCCAACTACCACCTTATCGATGCACGG
573 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * * *
12144225 CTTGAGCATCCCATCTCTCTGGTCGGCGTAGTACCTGCCCGGCCACCCGTCCGCTCGTTT-ATCA
638 CTTGCGCATCCCGTCTCTCTGGCCGACGTAG----TGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * *
12144289 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGA-TCGAGGGTTGCGACAG
699 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAG
* * * * *
12144353 CAGGATCGGCAGCACGTAGAGGGGGACCTGGCCGATCCCCTGCTTGCGCATCTCGCCCCTCTGGC
763 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
12144418 TGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
828 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
12144483 A
893 A
* * * ** *
12144484 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACC-AGATCAAGGGTTGCAACAGCACATGCTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * *** * * *
12144548 GCTAGGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGAGGCACCA-T---C--GTCGAAGAACCT
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGAGCATCTCGGAGAACCT
* * * * * * *
12144607 GACC-AGCGGCATTGGAGTTCTGGTGGTCGGGGCGGCCGGGGGGGTGTGCGCACATGATGTGTGA
130 GACCGA-CAGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
** * * * * *
12144671 TGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAGCCTTGAGAACTAACTCC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * * *
12144736 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAATTGTCTTAATTGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
12144801 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAAATTTTTTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
12144866 ATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACTTCCAAAAAAATT
388 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-ACTTTCAAAAAAATT
*
12144931 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT-AAAGAATAGAAAACGAGTCGTCTTGC
452 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA-AATAGAAAACGAGTCGTCTTGC
* *
12144995 CATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCATT
516 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
12145060 GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
581 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
12145125 TCCCGTCTCTCTAGCC-AGCGTAGTGCCCGGTCGACCGCCCGCCTGCTCGTTTCATCGGTTGGCT
646 TCCCGTCTCTCTGGCCGA-CGTAGTGCCC-G-C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
12145189 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATTG
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
* * * *
12145254 GCAGCACGCAAAGGGGGACCAGACTGATCCCCGCCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
771 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
12145319 TGCCCGGACGTTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12145377 GCATACGGAGTTCATTCTCAG-CGTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTC-TAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGG
* * *
12145441 GCTCGGGCATGTGCTGGTGCCTCAATTCTCTTCA-CTGGGGCACCA-T---CA-C-CGGAGAACC
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATTGAGCATCTCGGAGAACC
* * * * * * *
12145499 TAACCGACGGCATTGGCGTTTCGGCGATCGGGGGGGTCGGGGGGTGTTCGCACATGATGTGCAAT
129 TGACCGACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
12145564 GGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
12145629 CCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGCCTGAAATGTGA
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
12145694 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
12145759 TGCCAAAAAAAATATAAGGATCACGTATGCCAAGTTTGGGGCCAAAATTC-CTTTCGAAAGAATT
389 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA--CACTTTCAAAAAAATT
* *
12145823 TTAAAAAATCCCGAGCCGTAAAATA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
452 TTAAAAAATCCCGAACCGTAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
12145887 CATGAAACTGCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATT
516 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
12145952 CGG-ATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGC
581 -GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
12146016 ATCCCGTCTCTCAGGTCGACGTAGTGCCCGCCTGCCTACTTGCCCGCTCATTTCGTCGGTTAGCT
645 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC--C--GCCCGCTCGTTTCGTCGGTTGGCT
* ** * * ** *
12146081 TAGGCATACGGAATTCATTTTC-GATCTAAGATTAGATCAGACTGAGGGTTAAGGTAGCAGGA-C
706 TAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATC
* * * ** *
12146144 GGGCAGCACGCAGAGGGAGACCCGATCGATCCTCGGCTTGCGCATATCGCCCCTCTAGCCGGCTG
770 -GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
12146209 AGCGCCCGCACGCTCATTTCATGGGTGGACTTAGGCATACGAAGTTCCTTCCCAGTCTAA
834 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * * * *
12146269 GCATATGAAATTCATTCACAGTCTAAGATTGGATCGGACCAAGGGTTACAGCAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12146334 CTCGGGCATGTGTTGGTGCCCCATTTTTCTTCATCGGGTCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT--T--GAGCATC-TCGGAGA
** * * *
12146399 ACCTGACCGGTAGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGAACATGATGTG
126 ACCTGACCGACAGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
12146464 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGCAAGAACTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12146529 ACCCCCTTAAAGAGCATTTGAAATTTTATAGGTTTGCTGCCAGTTA-CCGTTAAAGTGTCTGAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCTGAAA
* *
12146593 TGGGGACATTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
12146658 GTGCACGCCAAAAAAAATACAAGGATCATGTC-ACCCAAGTTTGAGGCCAAAACTCCTTCCGAAA
384 GTGCATGCCAAAAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAAC-ACTTTCAAAA
* * *
12146722 AAATTTTAAAAAAGCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTC
447 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
12146787 TTGCCATGAAACTTCATGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
12146852 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTG
577 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** * * *
12146917 TGCATCCCATCTCTCTGGTCGGTGCAGT----GCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTT
642 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* *
12146978 AGGAATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * * *
12147043 TAGCTCGTAGAGGGGGACCTTG-CCGATCCCCGGCTTGTGCATCCCGCCTCTCTGGCCGGCTGAG
772 CAGCACGCAGAGGGGGACC-CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
12147107 CACACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12147165 GCATACGGAGTTCATTCCCAATCTAAGATCGGACC-AGATCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
12147229 GCTCGGGCATGTGCTGGTGCCCCATTTTTCTTCACCGGGTCACCA-T---C-GC-CGGAGAAGCT
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGAGCATCTCGGAGAACCT
* * * * ** * *
12147288 GACCGAAAACATTGGGGTTTCGGTGATAAGGGGGGCGGGGGGGTGTGCGAACATGATGTGCGATG
130 GACCGACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
12147353 GGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAATCTCGAGAATTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * *
12147418 CTTAAAGAGAATTTTAGATTTTACAGATTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
12147483 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCCGAATTTTTTTGTGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
12147548 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-ATCGCTTCAAAAAAATTT
390 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-C-TTTCAAAAAAATTT
* *
12147612 TAAAAAATCCCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
453 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
** *
12147677 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCATTAG
518 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
12147742 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACCTTATCGATCCACGGCTTGCGCATC
583 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
12147807 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCG---GCTCGTTTCGTCGATTGGCTTAGGCAT
648 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
12147868 ACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGTGGCAGCA
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
12147920 CATACTGGGC
Statistics
Matches: 5291, Mismatches: 656, Indels: 320
0.84 0.10 0.05
Matches are distributed among these distances:
871 2 0.00
872 76 0.01
873 169 0.03
874 29 0.01
875 37 0.01
876 35 0.01
877 13 0.00
878 25 0.00
879 46 0.01
880 4 0.00
881 134 0.03
882 89 0.02
883 95 0.02
884 567 0.11
885 102 0.02
886 22 0.00
887 22 0.00
888 124 0.02
889 48 0.01
890 34 0.01
891 308 0.06
892 1011 0.19
893 332 0.06
894 49 0.01
895 223 0.04
896 799 0.15
897 60 0.01
898 15 0.00
899 322 0.06
900 10 0.00
901 1 0.00
902 1 0.00
903 41 0.01
904 444 0.08
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGAGCATCTCGGAGAACCTG
ACCGACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACTTTCAAAAAAATTTTAA
AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12143611 original size:25 final size:26
Alignment explanation
Indices: 12143570--12143621 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12143560 GGTTGACTAG
12143570 GCATACGGAGCTTCA-TTCCAGTCTAA
1 GCATACGGAGCTTCATTTCCA-TCTAA
*
12143596 GCATACTGAG-TTCATTTCCATCTAA
1 GCATACGGAGCTTCATTTCCATCTAA
12143621 G
1 G
12143622 ATCGACCGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGCTTCATTTCCATCTAA
Found at i:12144488 original size:26 final size:26
Alignment explanation
Indices: 12144458--12144510 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12144448 GTTGACTTAG
*
12144458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12144484 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12144510 G
1 G
12144511 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12146290 original size:26 final size:26
Alignment explanation
Indices: 12146243--12146295 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12146233 GTGGACTTAG
* * *
12146243 GCATACGAAGTTCCTTCCCAGTCTAA
1 GCATACGAAATTCATTCACAGTCTAA
*
12146269 GCATATGAAATTCATTCACAGTCTAA
1 GCATACGAAATTCATTCACAGTCTAA
12146295 G
1 G
12146296 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCACAGTCTAA
Found at i:12147175 original size:26 final size:26
Alignment explanation
Indices: 12147139--12147191 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12147129 GTTGACTTAG
*
12147139 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12147165 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12147191 G
1 G
12147192 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12151173 original size:8 final size:8
Alignment explanation
Indices: 12151160--12151185 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
12151150 GCATAGTGCC
12151160 CGCCCGCT
1 CGCCCGCT
12151168 CGCCCGCT
1 CGCCCGCT
12151176 CGCCCGCT
1 CGCCCGCT
12151184 CG
1 CG
12151186 TTTCGTCGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.62, G:0.27, T:0.12
Consensus pattern (8 bp):
CGCCCGCT
Found at i:12151391 original size:26 final size:26
Alignment explanation
Indices: 12151362--12151414 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12151352 GTTAAGTTAG
12151362 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12151388 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12151414 G
1 G
12151415 ATCGGATTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12152281 original size:26 final size:26
Alignment explanation
Indices: 12152244--12152296 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12152234 GTTGACTTAG
12152244 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
12152270 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12152296 G
1 G
12152297 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12153185 original size:26 final size:26
Alignment explanation
Indices: 12153149--12153201 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12153139 GTTGACTTAG
12153149 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12153175 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12153201 G
1 G
12153202 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12157532 original size:26 final size:26
Alignment explanation
Indices: 12157480--12157532 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12157470 GTTGACTTAG
*
12157480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
12157506 GCATAGGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12157532 G
1 G
12157533 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12158407 original size:26 final size:26
Alignment explanation
Indices: 12158378--12158430 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12158368 GTTGACTTAG
*
12158378 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12158404 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12158430 G
1 G
12158431 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12160201 original size:26 final size:26
Alignment explanation
Indices: 12160164--12160216 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12160154 GTTGACTTAG
*
12160164 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12160190 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12160216 G
1 G
12160217 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12161718 original size:903 final size:902
Alignment explanation
Indices: 12156677--12172643 Score: 19687
Period size: 898 Copynumber: 17.7 Consensus size: 902
12156667 TGGATTGGGA
* * *
12156677 CATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCG-CTGGAGCATCGCCGGGGAACCTG
1 CATGTGCTGGTGCCGCATTTTTC-TTCTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTG
** * * *
12156741 ACCGACGATATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCACCCATGATGTGCGATGG
64 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
12156805 GTCCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCC
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
12156870 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
12156935 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTTTGCATG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *** *
12156999 CCAACAAAAATACAAGGATCACATCTACCAAGTTTATAGCCAAAACAT-CTTTCGAAAAAATTTT
324 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAAAAAATTTT
* * **
12157063 -AAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
388 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
12157127 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGA
453 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * * * *
12157192 ACGTAGAAATATGAAGATGTGCCTAAACTCACCTACCAACCTATCGATCCATGGTTTGTGCATCT
518 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** *
12157257 CGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCTCGCCCGTTCGCTCGTTTCGTCGATTGGCTTAGG
583 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * * * *
12157322 CATACGGAGTTCATTCACAGTCTAAGATTGGACCAGATCGAGGGATGCGGCAGCAGGATCGACAA
648 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * ** *
12157387 CATGTAGAGGGGGACCC-AGCCAATCCCTGGCTTGCGCATTGCGCCCCTCTGGCTGGCTGAGCTG
713 CACGTAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-G
* *
12157451 -CCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGGA
776 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * *
12157515 GTTCATTCCCAATGTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTAGGCTCGAG
841 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * *
12157577 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGTCGGAAAACTTGA
1 CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * *
12157642 CC-AGCGACATTGGAGTTCTGGCGATCGGGGGGGCCGGGGGG-GTGCGCACATGATGTACGATGG
65 CCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
12157705 GTGCTGGTACTTGGCCGTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCC
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
12157770 TTAAAGAGCATTTTAGATTTTACAGATTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
12157835 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTGTGTGCATG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
12157900 CCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTA
324 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * *
12157965 AAAAATCCCGAACCGCAAAAAATTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATG
389 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
12158030 AAACTTCACTTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
454 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
12158095 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTAGCGCATCCC
519 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * ** * *
12158160 GTCTCTATGGCCGGCGTGGTGCCCG---GC-CGCCCACCCATTCGTTTCGCCGGTTGGATTAGGC
584 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * *** *
12158221 ATATGGAGTTCATTCCCAGTCTAAGATC-GAACAAGACTGAGGGTTGTGATGGTAGGATCGGC--
649 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * *
12158283 CACGAGTAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACCGAGCG
713 CAC--GTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
12158348 CCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAGCATATGGA
776 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
12158413 GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCACATGCTGGGCTCGGG
841 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * *
12158475 CATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * *
12158540 CCGACGGCATTGGCGTTCC-AGCAATC-GGGGGGCCGAAGGGGTGTGCGCACATGATGTGC-ATT
65 CCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGA-T
* * * *
12158602 GGGTGTTGATACTTGGCCCTTATATTGGCCCTCTATCCCTCAGCAAACCTCGAGAACTCACACCC
127 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
12158667 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGG
192 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * * * *
12158732 ACACTTTTTCCAAATGGTCACAAAATCTAGTACACTTTGATTTTTTAGCTCAATATTTTTGTGGA
257 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
12158797 TACCAACAAAAATAGAAGGATCACATCTACCAAGTGTGGGGCCAAAACAT-TTTCCG-AAAAATT
322 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAAAAAATT
* * * * *
12158860 TTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCC
386 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
12158925 ATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGTCATGAAAATGGCATTG
451 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
12158990 GCATTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
516 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
12159055 CCCGTCTCTCTGGCCGACATAGTGCCCG--C-C-CGCCCG--C-C-CATTTCGTCGGTTGGCTTA
581 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * **
12159112 GGCATACGGATTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAACAGGATCACC
646 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
** * * * * * *
12159177 AGCACACAGAGGGGAACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGACTAAGCA
711 AGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * * *
12159242 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGATCAGTCCCAGTCTAAG-GTACGGA
776 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
12159306 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCATATGCTGGGCTCGGG
841 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * *
12159368 CATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAG-ATCACCGGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * *
12159432 CCGGCGGCATTGGCGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
65 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*** * *
12159497 TGCCAATACTTGGCCCTTATATTGGCCACCTATCCCTCAGCAAACCTCGAGAACTCACACCCCCT
130 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
12159562 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
195 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * * *
12159627 CTTTTTTCAAATGGTCACAAAATCTAGTACACTTTGAGTTTTTAGCTGAATATTTTTATGGATAC
260 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * ** *
12159692 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CAAAAATGTTTTTCGAAAAAATTTTA
325 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTA
* *
12159756 AAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
389 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
12159821 AAACTTCATGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCA
454 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
12159886 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
519 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
12159951 GTCTCTCTGGCCGGCGTAGT----G--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
584 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
12160008 GTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGAGGCAGCAGGATTGGCAGC
649 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * *
12160073 ATGTAGAGGGGGACCC-AGCCGA-CCCCAGCTTGCGCATCCCGCCCCTTTGGCCGGCTGCGCGCC
714 ACGTAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
12160136 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGT
778 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * *
12160201 TCATTCCCAGTTTAAGATCGGACAGGACCGAGGATTGTGGTAGCACATGCTGGGCTCGGG
843 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * ** *
12160261 CATGTGTTGGTGCCACATTTTTCTTCACAGGGGCACCATCACCGGAGCATGGCCGGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTCTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * *
12160326 CTGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGG
65 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
12160391 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCT
130 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
12160456 TAAAGACCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGCACA
195 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
12160521 CTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGATTTTAGCTGAATTTTTTTGTGCATAC
260 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
12160586 CAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAA
325 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * *
12160651 AAAATTCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGA
390 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
12160716 AACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
455 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
12160781 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCACATCCCA
520 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
12160846 TCTCTCTGGCCGGCGTAGTGCCCACCCGCTCGCCCGCCCGCTCATTTAGTCGGTTGGCTTAGGAA
585 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
12160911 TACAGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATTGGTAGCA
650 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * * *
12160976 CGCAGATGGGGACCCGATCGATCCCCGGCTTACCCATCCTGCCCCTCTAGCCTGCTGAGCGCCCG
715 CGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * * *
12161041 TATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCCATGCATACGGAGTTC
780 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* ** * *
12161106 ATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAACAGTACATACTGGGCTCGGG
845 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * *
12161164 CATGTGTTGGTGCCGCATTTTTCTTCACCGGGCACCATCGTCGAAGCATCGCCAGAGAACCTGAT
1 CATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * ** *
12161229 CGGCAGTATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
66 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
12161294 ACTAGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTT
131 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
12161359 AAGGAGCATTTTCA-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTTTGAAATGGGGACA
196 AAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
12161423 CTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGTTGAATGTTTTTTGTGCATG
260 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATG
* * *
12161488 CCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTC
324 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
12161553 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTAGCCATG
389 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * *
12161618 AAACTTCACGTGAAGGCTTAAGAGACCATTGTAAGAATTTACAAACCATAAAAATGGTATTGGCA
454 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
12161683 CGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCC
519 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * * *
12161748 GTCTGTCTGGCCGGAGTAGTGCCAGGCCGCCCGGCCGGCCGCTCGTTTCATCGGTTGGCTTAGGC
584 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** ** * * * * * **
12161813 ATACGAAGTTCATTCCTAGTCTAAGATTGGACTGGATCGAGGGTTACAGTAGTAGGATCATCAGC
649 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * ** * *
12161878 ACGTAGAGGCGGACCCGACCGATCCCCGGCTAGAGCATCCTGCCCCTCTGGTTGGCTGAGAGCCT
714 ACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
12161943 GCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
779 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
12162008 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGGTCGGG
844 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* ** *
12162067 CATGTGCTTGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* **
12162132 CCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGCA
65 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
12162196 TGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACCCACA-CCCCT
130 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
12162260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGAGACA
195 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
12162325 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGTGCATG
260 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATG
* * * *
12162390 CCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCTTTCCAAAAAAATTTTA
324 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * ** *
12162455 AAAAATCCCAAACCGTAAAATGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTCCCATG
389 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
12162520 AAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCA
454 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
***
12162585 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAACTTGCGCATCCC
519 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
12162650 GTCTCTCTGGCCGGCATAGTGCCCG--C-C-CGCCCGTCCGCTCGTGTCGTCGGTTGGCTTAGGT
584 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * * *
12162711 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGTAGGATCAGCAGC
649 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * *
12162776 ACGCAGAGGGGGA-CCAAGCTGATCCCTGTCTTGCGCATCCCGCCCATCTGGCCGGCTGAGCACC
714 ACGTAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
12162840 CGTACGCTAGTTTC--------A--T-GG--T------TTGA----C--TC-AAGCATATGGAGT
778 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * *** *
12162879 TCATTCCCTGTGTAAGATCGGACCAGACCGAGGGTTACATAAGCACATGCTGGGCTTGGG
843 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * *
12162939 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCACCAGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
** * * *
12163004 ATGACGGCATTGGGGTTTCGATGAT-TGGGGGGCCGGGGGCGGTGTGCGCACATGATGTGCGATG
65 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGATGTGCGATG
* * *
12163068 GGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCTCTCATCAAACCTCAAGAACTCACA-CCC
128 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
12163132 CTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGT
193 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
12163197 CACCTTTTTCAAAAGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTTTTTATGCAT
258 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
12163262 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
323 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** *
12163327 AAAAAATCCCGATCCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCAT
388 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
12163392 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
453 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
12163457 ATGCAGAAATATCAAGATGGGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCT
518 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
12163522 CGTCTTTCTGGCCAGCGTAGTGCCCGCCCGC-CTGTCCGCTCGCTCGTTTTGTCAGTTGGCTAAG
583 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * **** * **
12163586 GCATACGGATTTTATTCCCAGTCTAAGATCGGATCGGACCCG-CCCCT-CTGGC--C-GGCTAAG
647 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCGAGGGTTGC-GGCAGCAGGATCGG
* * * *** *** * * * * * * *** * *
12163646 CA-CCCGCA-CGCTCGTTTCG-TGGGT---TGACTTAG-GCATACAG-AGTTCAT-TCCTAGTCT
710 CAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTT-GCGCATCCCGCCCCTC-TGGCC--GGCT
* **** * * *** * *
12163702 AAGCATATAG-AC-TTC-ATTC-CCAG-T--C-TAAGCATACAGAGTTCATTCCCAG--T---C-
771 GAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
*
12163753 TA---AG---------A--------TCGGACCGGACCGAGGGTTGCGCCAGCACATGCTGGGCTC
835 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
*
12163798 GAG
900 GGG
* * * * ***
12163801 CATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCAGAGTATCTTTGGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
** *
12163866 CCGGA-GGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATATGCGATG
65 CC-GACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
* * * *
12163930 GGTGCTGGTACTTGGCCCTTATATGGGCCCCCTATCCCTCATTAAACTTCAAGAACTCACA-CCC
128 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
12163994 CTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGAGA
193 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
12164059 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCAT
258 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
12164124 GCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAGTTTT
323 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** *
12164189 AAAAAATCCTGAACCGCAAAAATTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
388 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * * *
12164254 GAAACTTCACGTGAAGGCTAAAAGGACCATTTTTTGAATTTACAACCCATAAAAATGGCATTGGC
453 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
12164319 ACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCT
518 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
12164384 TGTCTCTCTGGCCGACGTAGTGCCCG--C-C-CGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGG
583 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * ** * * *
12164445 CATACGAAGTTTATTCCCAGTCTAAGATCAGATCGGATAGAGGGTTACGGCAGCAAGATCGACAG
648 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
** * * * *
12164510 CACACAGAGGGGGACCCGA-CAGATCCCCGACTTGCACATCCCGCCCTTCTGGCCGGCTGAGTGC
713 CACGTAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* ** *
12164574 CCCCAAACTCGTGTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGA
777 CCGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
12164638 GTTCATTCCCAGTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTA
841 GTTCATTCCCAG--T---C-T---AAG---------A-TC-------GGACCGGACCGAGGGTTG
*
12164703 TGGCAGCACATGCTGGGCTCGGG
880 CGGCAGCACATGCTGGGCTCGGG
* * *
12164726 CATGTGCTGGTGCCGTATTTTTCTTGTCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTCTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
*
12164791 CCGACGGCATTGGGGTTCCGACGAT--GGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGG
65 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * * * *
12164854 TGCCGGTACTTCGCCTTTATATCGGCCCTCTATCCCTCATCAAACCTCTAGAACTCACACCCCCT
130 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * ** * * *
12164919 TAAAGATCATTTGAGATTTTGCAGGTTTATTACCAGTAGCCATTAAAGTATCTGAAATGGGCACA
195 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
12164984 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTCTGCATTC
260 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
12165049 CAAAAAAAATAAAAAAATACAAGGATCATGTCT-CCATGTTTGGGGCCAAAACTCCTTCCGAAAA
325 C-------A-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
12165113 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
382 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12165178 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGC
447 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
12165243 ATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGT
512 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
12165308 GCATCCCATCTCTCTCGTCGACGTAGTGCCCACCCGGC-CGCCCGCCCGCTCGTTTCATCGGTTG
577 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCTCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * ** *
12165372 GCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTATGCCAGCAGGA
641 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * *
12165437 TCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCAGCTTGCG-ATCCCGCCTCTCTGGCCGACT
706 TCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
12165501 GAGCGCCCGCATGCTCGTTTCATTGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCAT
771 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
12165566 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCATATGCTGGGCTGG
836 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
12165631 GG
901 GG
** * * * **
12165633 CATGTGCTACTACCGTATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCATCGGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * ** ** *
12165698 CCGGCGGCTTTGGGGTTCTGATGAT-TAGGGGGTTGGGGGGTGTGCGCACATGATGTGTGATGGG
65 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
12165762 TACTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
130 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
12165827 TAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGACA
195 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
12165892 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGC
260 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * * * *
12165957 TAAAAAAAATACACGGATCATGTCTACCAAGTTTAGGCCCAAAAATCCTTCCGAAAAAATTTTAA
325 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
12166022 AAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
390 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
12166087 AACTTCACGTGAAAGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
455 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
12166152 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCG
520 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * **
12166217 TCTCTCTGGCTGGCGTAGTGCCTG--C-CT-GCCCGCCCATTCGTTTCGTCGGTTGGCTTAGGCA
585 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
12166278 TACGGTGTTCATTCCCAGTGC-AAGATCGGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGC
650 TACGGAGTTCATTCCCAGT-CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
** ** * ** * *
12166342 ACGTAGAGGGCAACCCGATCGATCCCCGATTTACGCATCCCGCCCCTCTGGCCGATTGAGTGCCT
714 ACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
12166407 GCACGCTCGTTTTGTGGGTCGACTTGGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTT
779 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
** * * * *
12166472 CATTATCA-TCTAAGATCAGACCGAACCGAGGG-TGCGACAGCACATACTGGGCTCGGG
844 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * ** *
12166529 CATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * *
12166594 CCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTTGTGTGCACATGATGTGTGATG
65 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATG
*
12166659 GGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTTATCAAACCTCGAGAACTCACACCCC
128 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
12166723 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATAGGGA
193 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
12166788 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCAT
258 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
12166853 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCTTTCCGAAAAAATTTT
323 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* ** * *
12166918 AAAAAATCTCGAACCGCAAACGGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTG-CAT
388 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * * *
12166982 GAAACATCACGTGAACGCTTAAGGGACCATTATATAAATTTACAAGTCATAAAAATGGCATTGGC
453 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * * *
12167047 ACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACACATCT
518 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * **
12167112 CGTCTCTCTGGCCTGCATAGTGCCCGCCCGCT----CGCCTGCTCGTTTAATCGGTTGGCTTA-G
583 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * * * * *
12167172 CATACGAAGTTCATTCCCAGTCTAAGATTGGTCCAGACTGAGGGTTGCAGCCGCAGGATCGGTAG
648 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* ** * * ** * *
12167237 TACACAGAGGGGGACCTGGTCGATCCCCTACTTGCGTATCCTGCCCCTCTGGCCGGCTGAGCGCC
713 CACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * **
12167302 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAAAGT
778 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * *
12167367 TCATTCCCAGTCTATGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTTGGG
843 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * *
12167427 CATGTGCTGGTGCCGTATTTTCCTTCGC-CGG-A-CA-------ATCAT---CGGAGAACCTGAT
1 CATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* *
12167479 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGG
66 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
* * ** * *
12167544 TGCTGCTACTTGGCCCTGATATTGGCCCTTTATCCCTCATCAAACCTCGAGAACTCACATCCCTT
130 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
12167609 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATAGGGACA
195 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
12167674 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTGGCGCATGC
260 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
12167739 CAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTTAAA
325 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** * ** *
12167804 AAAATCTTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
390 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
12167869 AACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
455 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
12167934 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
520 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** * * * * *
12167999 TATCTCTGGTGGGTGTAGAGTCTG--C-CT-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
585 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
12168060 TAC-GATGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGC
650 TACGGA-GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* ** * *
12168124 ACTTAGAGGGGGACCCGATCGATCCCCGGCTTATGCATCCCACCCCTCTGGCCGGCTGAGTGCCC
714 ACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
12168189 GCACGCTTGTTTTGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACGGAGTT
779 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
** * * * * *
12168254 CATTATCAGTCTAAGATCAGACCGAACCGAGGG-TGCGGTAGCACATACTAGGCTCGGG
844 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* *
12168312 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * *
12168377 CCGACGACATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGTGTGCGCATATGATGTCCGATGGG
65 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * **
12168442 TGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAACAAACCTTAAGAACTCACACCCCCT
130 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
12168507 TAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACA
195 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * * *
12168572 CTTTTTTCAAATGGTCACAAAATGTTGTGCACTTCAAGTTTTTAGCTGAATGTTTTGGCGCATGC
260 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * ** **
12168637 CAACAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCAGTCAAAAAAAATTTTAA
325 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
12168702 AAAATCCCGAACCGCAAAAGGTTTCGAAAATCATGAAAAATA-AAAGACGAGTCATCTTG-CATG
390 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA-ACGAGTCGTCTTGCCATG
*
12168765 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCATTGGCA
454 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
12168830 TGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTACGCATCTC
519 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
12168895 GTCTCTTTGGCTGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
584 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
*** * * * * *
12168960 ATACGGAGTTCATTCCTTCTCTAGGATCAGACTAGACTGAGGGTTGTGGCTGCAGGATCGGCAGC
649 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* ** * * * * *
12169025 ACATAGAGGGTTACCCGACCGATCCCCGACATGTGCATCCCTCCCCTCTGGCCGGCTGAGCGCCC
714 ACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
** *
12169090 GCACGCTAATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTT
779 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * * *
12169155 CATTCCCAGTGTAAGATCAAACTGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAG
844 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * *
12169214 CATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCGGAGCATTGCCAGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * *
12169279 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGTGATGG
65 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
12169344 GTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAACCCC
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
12169409 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
12169474 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCCTG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
12169539 CCAAAAAAAATGCAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCTTTCGAAAGAATTTTA
324 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
** * *
12169604 AAAAATTACGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAAG
389 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
12169669 AAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGTATTGGCA
454 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
12169734 TGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTGCGCATCCG
519 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
12169799 GTCTCTCTGGCCGGCGCAGTGCCTGCCCGGCT-GCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGG
584 GTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
12169863 CATACGGAGTTCATTCGCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGACCA
648 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG-GCA
** * * * * *
12169928 -CACACAGAGGGGGACTCGGTCGATCCCTGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGC
712 GCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
12169992 CCGCACGCTCGTATTC-TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
777 CCGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
12170056 GTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGG
841 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* *
12170118 CATGTGCTTGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * * * *
12170183 CCGACAGCTTTGTGGTTCCGGCGATCGGGGGAGCCGGGGGGGCTGTTCGCATATGATGTGCGATG
65 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATG
* *
12170248 GGTGCTGGTACTTGACCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCC
128 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
12170312 CTTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGG
193 CTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
12170377 ACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATGTA
257 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** * * *
12170442 TGCCAACAAAAATACAAGGTTCACGTCTACTGAGTTTGGGGCCAAAGCTCCTACCGAACAAATTT
322 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* ** * *
12170507 TAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCA
387 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
12170572 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
452 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * * * *
12170637 CATGTAGAAATATGAAGATGTACCTAAACTCACCTACCACCTTATCGAACCATGACTTGCGCACC
517 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
12170702 CCATCTCTCTAGCCGGCGTAGTGCCCGCCTGCCCACCCGCCCGCCAGATCGTTTCGTCAGCTGGC
582 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCG-C---TCGTTTCGTCGGTTGGC
* * * *
12170767 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCA-ACCGGATCGAAGGTTGTGGCAGCAGGAT
643 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
12170831 CAGCAACACGTAGAGGGGGACCCGGTCGAACCACGGCTTGGGCATCCCGCCCCTCTGGCCGGCTG
707 CGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
12170896 AGTGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
772 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * ** *
12170961 CGGAGTTCGTTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGTTAGCACATGCTGGGCTTGG
837 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
12171026 G
902 G
** * * * * * *
12171027 CATGTATTGGTGTCACATTTTTCTTTGTCAGGGCACCATCGTCAGACCATCGCCGGAGAACCTGA
1 CATGTGCTGGTGCCGCATTTTTC-TTCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * *
12171092 CC-A-GTGCCATTAGGGTTTCGATGATCGGGAGGGCCGGAGAGGTGTGCGCACATGATGTGCGAT
65 CCGACG-G-CATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGAT
*
12171155 GGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
127 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
12171219 CCTTAAAGAGCATTTGAGATTTTTCAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
192 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
12171284 ACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTG-ATTTTTTTGTGCA
257 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * *
12171348 TGCCAACAAAAATACAAGGATCACATATACCAAGTTTAGGGCCGAAACTCCTTTCAAAAAAATTT
322 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
12171413 TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGGCATAAATGGC
387 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA-G--T---CGTC
*
12171478 ATTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
446 -TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* **
12171543 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTACTT
510 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** *
12171608 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTTCCACCCGCTCGTTTCGTCGGTT
575 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTT
* *
12171673 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGG
640 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
** * * * * * * *
12171738 ATCGATAGCACGTAGAGGGGGTCCCGGTTGATCCCCGGCTTGCACATCTCGCCCCTCTGCCCAGC
705 ATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *** * * * * *
12171803 TGCA-TGCTCGTTTTG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGAATACGGA
770 TG-AGCGCCCG-CACGCT-CG-T---TT---CGT--GG-GTTGA----C---TTAGGCATACGGA
* * * * * *
12171866 GTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCATTCTAAGATCGAACCAGACCGAGGGTTA
815 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
*
12171931 CGGCAGCACATGCTGGGCTTGGG
880 CGGCAGCACATGCTGGGCTCGGG
* * * * *
12171954 CATTTGCTGGTGCCGTAATTTTT-TTCGTCGGGGCAACATCGTCGGAGCATCACCGGAGAACCAG
1 CATGTGCTGGTGCCG-CATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * * * *
12172018 ACCGACGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTACGCATATGATGTGTGATCG
64 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
12172082 ATGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* ** * *
12172147 TTAAGGAGTGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATTGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
12172212 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
12172277 CCAACAAAAATACATGGATCAAGTCTACCAAGTTTGGGGCCAAAACTACTTCTGAAAAAATTTAA
324 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
** * * *
12172342 AAAAATCTTGAATCGCAAAAAGTTCCAAAAATCATGAAAAATAGATAACGAGTCGTCTTGCCATG
389 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
12172407 AAAATTGCCATGAAAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
454 -AAA----C---------TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
12172472 AAATGGTATTGGCATGCAGAAATATAAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCAT
505 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * ** * *
12172537 GGCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTGCTCGCCACCCT-GCCTACCCGCTCATTTCA
570 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-CGCTCGCCCGCCCGCTCGTTTCG
12172601 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
634 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
12172644 GGACTGGATT
Statistics
Matches: 13086, Mismatches: 1682, Indels: 564
0.85 0.11 0.04
Matches are distributed among these distances:
857 1 0.00
858 63 0.00
859 3 0.00
860 2 0.00
861 4 0.00
862 574 0.04
863 19 0.00
864 2 0.00
866 7 0.00
867 20 0.00
868 18 0.00
869 12 0.00
870 2 0.00
871 2 0.00
872 154 0.01
873 306 0.02
874 197 0.02
875 4 0.00
876 2 0.00
877 60 0.00
878 4 0.00
879 7 0.00
881 3 0.00
882 6 0.00
883 47 0.00
884 317 0.02
885 209 0.02
886 191 0.01
887 8 0.00
888 2 0.00
889 11 0.00
890 2 0.00
891 7 0.00
892 375 0.03
893 527 0.04
894 674 0.05
895 10 0.00
896 274 0.02
897 484 0.04
898 1394 0.11
899 339 0.03
900 291 0.02
901 547 0.04
902 1038 0.08
903 1107 0.08
904 551 0.04
905 467 0.04
906 111 0.01
907 251 0.02
908 271 0.02
909 444 0.03
910 7 0.00
911 1 0.00
912 3 0.00
913 163 0.01
914 4 0.00
915 1 0.00
917 3 0.00
918 2 0.00
919 2 0.00
920 11 0.00
921 5 0.00
922 80 0.01
923 128 0.01
924 9 0.00
925 159 0.01
926 153 0.01
927 259 0.02
928 8 0.00
929 1 0.00
930 236 0.02
931 22 0.00
932 3 0.00
933 89 0.01
934 313 0.02
935 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
CATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
GTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
Found at i:12161999 original size:26 final size:26
Alignment explanation
Indices: 12161970--12162022 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12161960 GTTGACTTAG
*
12161970 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12161996 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12162022 G
1 G
12162023 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12163717 original size:26 final size:26
Alignment explanation
Indices: 12163678--12163756 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
12163668 GTTGACTTAG
*
12163678 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
12163704 GCATATAGACTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12163730 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12163756 G
1 G
12163757 ATCGGACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12164639 original size:26 final size:26
Alignment explanation
Indices: 12164603--12164681 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
12164593 GTTGACTTAG
*
12164603 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12164629 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12164655 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12164681 G
1 G
12164682 ATTGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12165567 original size:26 final size:26
Alignment explanation
Indices: 12165536--12165588 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12165526 GTTGACTTGG
12165536 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12165562 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12165588 G
1 G
12165589 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12168263 original size:26 final size:26
Alignment explanation
Indices: 12168216--12168268 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12168206 GTCGACTTAG
*
12168216 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTACCAGTATAA
* *
12168242 GCATACGGAGTTCATTATCAGTCTAA
1 GCATACGGAGTTCATTACCAGTATAA
12168268 G
1 G
12168269 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTATAA
Found at i:12169155 original size:26 final size:26
Alignment explanation
Indices: 12169119--12169170 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12169109 TGACTTAGGC
12169119 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
*
12169145 ATACGGAGTTCATTCCCAGTGTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
12169171 TCAAACTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:12170057 original size:26 final size:26
Alignment explanation
Indices: 12170021--12170073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12170011 GTTGACTTAG
12170021 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
12170047 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12170073 G
1 G
12170074 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12170960 original size:26 final size:26
Alignment explanation
Indices: 12170930--12170982 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12170920 GTTGACTTAG
12170930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12170956 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12170982 G
1 G
12170983 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12171869 original size:26 final size:25
Alignment explanation
Indices: 12171833--12171910 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 25
12171823 TGACTTAGGC
12171833 ATACGGAGTTCATTCCCAGTTTAAGA
1 ATACGGAGTTCATTCCCA-TTTAAGA
* *
12171859 ATACGGAGTTCATTCCCAATCTAAGC
1 ATACGGAGTTCATTCCC-ATTTAAGA
*
12171885 ATATGGAGTTCATTCCCATTCTAAGA
1 ATACGGAGTTCATTCCCATT-TAAGA
12171911 TCGAACCAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
25 2 0.04
26 42 0.93
27 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (25 bp):
ATACGGAGTTCATTCCCATTTAAGA
Found at i:12175063 original size:26 final size:26
Alignment explanation
Indices: 12175027--12175077 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12175017 TGACTTAGGG
*
12175027 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
12175053 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
12175078 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:12176421 original size:714 final size:713
Alignment explanation
Indices: 12175051--12177943 Score: 4165
Period size: 687 Copynumber: 4.1 Consensus size: 713
12175041 CCCAGTCTAA
* * * *
12175051 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12175116 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACAATCATCTGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * *
12175181 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGCGGGTGTGCGTAGATGATGTG
131 ACCTGACCGGCGGCATTGGGGTT-CGGCGATCGGGGGGGCCAGG-GGGTGTGCGCACATGATGTG
* * * *
12175246 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAGCACAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12175311 ACCCCCTTAAAGAGCAATGGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12175376 GGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTGTTT
* * * *
12175441 ATGCATGCCAAGAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACACCTTCCGAAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * **
12175506 AATTTTAAAAAATACCGAACCCCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
12175571 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
12175636 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12175701 GCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGCTCGTTTGGTCGGTTGGTTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTA
12175766 G
713 G
* * * * *
12175767 GCATACGGAGTTCATTCCCAATTTAAGATCGGACCTGACAGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
12175832 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * *
12175897 ACCTGACAGGCAGCATTGGGGTTTCGACAATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGG-TTCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
12175962 GATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12176027 CCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12176092 GGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGT
*
12176157 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
12176222 TTTTAAAAAATCCCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
12176287 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
12176352 TGGCATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCAGGGCTTGCGC
585 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
12176417 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCACCCGCTCGTTTGGCCGGTTGGTTTAG
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
12176481 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
12176546 CTCAAGCATGTGCTGGTG-TCGTATTTTTCTTCGCCATGGCACCACCATCGGAGCATCGTCGGAG
66 CTCAGGCATGTGCTGGTGCT-GCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAG
*
12176610 AACCTGACCGGCGGCATTGCGGTT---C---C------G--A---------CG---ATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
12176649 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12176714 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12176779 GGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGT
* ** *
12176844 GCATGCCAAAAAAACTACAAGGATCACGTCTAAAAATTTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
12176909 TTTTAAAAATTCCCGAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 TTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12176973 GCCATGAAACTTCACGTGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
12177038 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
12177103 CATCCCGTCTCTCTGGCAGGCATAGTGCCCGCCTGCCCGTCCGTCCGCTCGTTTCATCAGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC--AC--CCGCTCGTTTCGTCGGTTGGC
12177168 TTAG
710 TTAG
* * * * * * *
12177172 GCATACGAAGTTCACTCCCAGTCAAAGATCAGATCAGACCGAGGGATGGGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12177237 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * *** * *
12177302 ACCTGACCGGTGGCATTGGGGTTCTGGTGAT-GGGGATTCCGGGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTC-GGCGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTG
* *
12177366 CGATGGGTGCTGGTACTTGGTCCTTATATTGG-CCCCTATCACTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12177430 ACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12177495 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGATTTTGTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTG
* * * * ** * *
12177560 TGCATGCCAAAAAAAATACTAGGATCATGTTTATCAAGTTTCAGG-CAAAATTCCTTCTGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
12177624 ATGTTAAAAAATTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAGCGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12177689 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCA
519 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12177754 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12177819 CATCCCGTCTGTTTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCCGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CAC--CCGCTCGTTTCGTCGGTTGGC
12177884 TTAG
710 TTAG
* * *
12177888 GCATACGGAGTTCAATCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
12177944 GGATTGGCAG
Statistics
Matches: 1970, Mismatches: 168, Indels: 78
0.89 0.08 0.04
Matches are distributed among these distances:
687 470 0.24
688 4 0.00
689 1 0.00
690 2 0.00
691 153 0.08
692 1 0.00
699 1 0.00
701 1 0.00
707 1 0.00
710 1 0.00
713 3 0.00
714 450 0.23
715 198 0.10
716 453 0.23
717 191 0.10
718 40 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:12178084 original size:26 final size:26
Alignment explanation
Indices: 12178047--12178099 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12178037 GTTGACTTAG
12178047 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12178073 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12178099 G
1 G
12178100 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12178976 original size:26 final size:26
Alignment explanation
Indices: 12178940--12178992 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12178930 GTTGACTTAG
12178940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
12178966 GCATATGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12178992 G
1 G
12178993 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12179867 original size:26 final size:26
Alignment explanation
Indices: 12179837--12179887 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12179827 TGACTTAGGG
*
12179837 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAATTCATTCCCAGTCTAAGC
12179863 ATACGAAATTCATTCCCAGTCTAAG
1 ATACGAAATTCATTCCCAGTCTAAG
12179888 ATCGGAGTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
ATACGAAATTCATTCCCAGTCTAAGC
Found at i:12180771 original size:26 final size:26
Alignment explanation
Indices: 12180742--12180794 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12180732 GTTGACTTAG
*
12180742 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12180768 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12180794 G
1 G
12180795 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12182804 original size:865 final size:863
Alignment explanation
Indices: 12181454--12184878 Score: 4189
Period size: 865 Copynumber: 3.9 Consensus size: 863
12181444 CCACCCGCCT
* * * * * *
12181454 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAAGCATAC-GAAGTTCATTCCCAATCGAAGATCAGA
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGA
* * * * *
12181518 CCAGACTGAGGGTTACGGCAGCACATTCTGGGCTTGGGCATGTTCTGGTGCCAGATTTTTCTTCG
65 CCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
* * *
12181583 TCGGGCCACCATCGC-AGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATT
130 TCGGGGCACCATCGCTA-GAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-T
* * *
12181647 AGTGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGG
193 CG-GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* ** *
12181712 CCCCTTATCCCTCATCAAACCTCAAGAACTCACATTCCCTTAAAGACCATTTGAGATTTTACAGG
257 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * ** * *
12181777 TTTGTTGCCAGCAGCCATTAAAGTGTCTGAAACAGGGACAATTTTTTCAAATGATCACAAAATCT
322 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
12181842 TGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCT
387 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* ** * * *
12181907 ACCAAGGTTGTTGCCAAAAATCCTTTCGAAAAAATTTAAAAAAATCTCAAACCGCAAAAAGTTTC
452 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTC
* * * *
12181972 AAAAATCATGAAAAATAGAAAATGAGTCGGCTTGCCATGAAACTTCATGTGAAGGCTTAAGCGAC
517 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
12182037 CATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCTAAA
582 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * * *
12182102 CCCACTTAGCACCCTATCGATCCACGGCTTGCACATCCTGCCTCTCTGGCCGGCGTAGTGCCCGT
647 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG-
** *
12182167 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATC
711 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* *
12182232 AAGGGTTGCGGCAGCAGGATTGGCAGCACGCAAAGGGGGACCCGATCGATCCTCGGCTTGCGCAT
776 AAGGGTTGCGGTAGCAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCTCGGCTTGCGCAT
* * *
12182297 CCCTCCCATCTGGCCGGTTAAGT
841 CCCTCCCCTCTGGCCGATTAAGC
*
12182320 GCCCACACGCTCGTTTCGTGGG-TGTACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTC-G
1 GCCCGCACGCTCGTTTCGTGGGTTG-ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA-TCAG
* * * * * * *
12182383 ATCGGACTGAGGGTTACGGCAGCACATGCTAGGCTCAGGCATCTACTGGTGTCACATTTTTCTTT
64 ACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
* * * * *
12182448 GCCGAGGCACCATCGCTAGAGCATCATCGGAGAACCTGATCGGCGGTATTGGGGTTCCGACGATC
129 GTCGGGGCACCATCGCTAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
** * *
12182513 GGAGGGGTTGGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTATTTGGCCCTTATATTGGC
194 GG-GGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
12182578 CCCTTATCTCTCATCAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
258 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
12182643 TTGCTGCCAGTAGCAATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGGTCACAAAATTTT
323 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * *
12182708 GTACACTTCGAGTTTTTAGCTAAAATTTTTTGTGCATGCCAAAAAAAATACGAGCATCACGTCTT
388 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * *
12182773 CTAAGTTTGGTGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAATTTTC
453 CCAAGTTTGG-GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTC
*
12182837 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAA
517 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* ** **
12182902 CATTGTATGAGTTTACAAGCCATAAAAATATCATTGGCACACAGAAATATGAAGATGTGCCTAAA
582 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * *
12182967 CCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGC
647 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTA--G--TGC
* * * *
12183032 CCACCTGCTCGTTTCGTTGGTTTTGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-GAAC
708 CCGCC-GCTCGTTTCGTCGG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-AC
* * *
12183096 CAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGCGGGACCCGATCGATCCTCGGCTT
770 CAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCTCGGCTT
* *
12183161 GCGCATCCCGCCCCTCTGGCCGACTGAA-C
835 GCGCATCCCTCCCCTCTGGCCGA-TTAAGC
* * *
12183190 GCACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTGTAAGCATATAG
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA--GT---C---TA-
* ** * *
12183255 AGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGTGGCAGCACATGCTGGGCTTGAGCA
57 AG---------A-TC--AGACCGGAC----T-GAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
** ** * * *
12183320 TGTGCTGGTGCTGCATTTTTCTTTATCGGGGCACCATCG-TCGGAGCATCATCGGAGAACCTAAC
105 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCT-AGAGCATCACCGGAGAACCTGAC
* * * *
12183384 CGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGAGGGTGTGTGCGCACATGATGTGCGATTGG
169 CGGCGGCATTGGGGTTCCGACGATC-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
12183449 TGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTT
232 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
*
12183514 TAAAGAGCATTTGAGATTTTCCAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TGGAAATGGGGAC
297 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGAC
* *
12183578 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTA-CTGAATTTTTTTATGCAC
361 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCAT
* * *
12183642 ACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGACAAAGTTTT
425 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** *
12183707 AAAAAATCCCAAACCGCAAGAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
490 AAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
12183772 GAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGT
555 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
12183837 GTGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
620 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
12183902 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCATTCGTTTCGTCGGTTGGCTTAGGCATA
685 CGCCTCTCTGGCCGACGTAGT----GCCCG-CCG--C--TCGTTTCGTCGGTTGGCTTAGGCATA
* **
12183967 CGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTGTAGTAGCAGGATCGGCAGCACG
741 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACG
* * * * *
12184032 CAAAGGGGGATCCGGTCGATCCCCGGCTTGCGCAT-CCTGCCCCCCTGGCCGATTGAGC
806 CAAAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCT-CCCCTCTGGCCGATTAAGC
12184090 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAATCTAAGCATACAG
1 GCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--CA----T-A-C--AG-----A-
** * *
12184155 TGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
41 -GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * * * * * * *
12184220 TATGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATTGTTGGAGCATCGCCGGAGAACCTGCCC
105 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCACCGGAGAACCTGACC
* * * * *
12184285 GACAGCATTGGGGTTCCGGCGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATCGGTG
170 GGCGGCATTGGGGTTCCGACGATC-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
12184350 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
234 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
*
12184415 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACT
299 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
12184480 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGATTTTTTTTGTGCATGCCA
364 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
12184545 AGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAATTTTAAA
429 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAA
*
12184609 AAATC-CTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
493 AAATCTC-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
12184673 AACTTCATGTGCAGGCTTAAAGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCTT
557 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
12184738 GCAGAAATATGATGATGTGCCTAAACACACCTACCACTCGATCGATTCC-CGGCTTGCGCATCCC
622 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCCACGGCTTGCGCATCCC
* * * * * * * * *
12184802 ACCCCTCTGGCCGAC-TGAGCGCACGCATGCTCGTTTCATGGGATGACTTAGGCATACGGAGTTC
686 GCCTCTCTGGCCGACGT-AGTGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
12184866 ATTCCCAGTCTAA
749 ATTCCCAGTCTAA
12184879 CTATACGGAG
Statistics
Matches: 2204, Mismatches: 262, Indels: 161
0.84 0.10 0.06
Matches are distributed among these distances:
864 1 0.00
865 454 0.21
866 156 0.07
867 5 0.00
868 2 0.00
869 19 0.01
870 160 0.07
871 5 0.00
872 2 0.00
875 1 0.00
878 2 0.00
879 2 0.00
888 3 0.00
891 51 0.02
893 2 0.00
894 1 0.00
895 8 0.00
896 108 0.05
897 449 0.20
898 17 0.01
899 453 0.21
900 250 0.11
901 14 0.01
905 8 0.00
906 2 0.00
907 2 0.00
908 2 0.00
909 1 0.00
911 2 0.00
915 1 0.00
916 1 0.00
917 3 0.00
918 2 0.00
919 1 0.00
921 1 0.00
924 2 0.00
926 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (863 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
CGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT
CGGGGCACCATCGCTAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
GGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
TTGCGGTAGCAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCTC
CCCTCTGGCCGATTAAGC
Found at i:12184608 original size:899 final size:892
Alignment explanation
Indices: 12182351--12184878 Score: 3489
Period size: 899 Copynumber: 2.8 Consensus size: 892
12182341 GTGTACTTAG
* * * *
12182351 GCATACAGAGTTCATTCCCAGTCTAAGATTCGATCGGACTGAGGGTTACGGCAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
12182416 CTCAGGCATCTACTGGTGTCACATTTTTCTTTGCCGAGGCACCATCGCTAGAGCATCATCGGAGA
65 CTCGGGCATATGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTTGGAGCATCATCGGAGA
* * ***
12182481 ACCTGATCGGCGGTATTGGGGTTCCGACGATCGGAGGGGTTGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * * * * *
12182546 GGTGGGTGCTGGTATTTGGCCCTTATATTGGCCCCTTATCTCTCATCAAACCACGAGAACTCACA
194 GATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
12182611 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTTAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
12182676 GGGACATTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTAAAATTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
12182741 GCATGCCAAAAAAAATACGAGCATCACGTCTTCTAAGTTTGGTGG-CAAAACTCCTTCCGAAAAA
389 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCCGAAAAA
* * *
12182805 ATTTTAAAAAATCTCGAACCGTAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCAAACCGTAAAAGTTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * **
12182870 GCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAGTTTACAAGCCATAAAAATATCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** *
12182935 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCG
582 TTGG-TTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12183000 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCACCTGCTCGTTTCGTTGGTTTTGCTTAGGCA
646 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTTGGCTTAGGCA
* * *
12183065 TACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
711 TACGGAGTTCATTCCCAATCTAAGATAGAACCAGACCAAGGGTTGCAGTAGCAGGATCGGCAGCA
* * *
12183130 CGCAGAGCGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAACGCACG
776 CGCAAAGCGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCCCTGGCCGACTGAACGCACG
* * *
12183195 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTGTAA
841 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * *
12183247 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12183312 CTTGAGCATGTGCTGGTGCTGCATTTTTCTTTATCGGGGCACCATCGTCGGAGCATCATCGGAGA
65 CTCGGGCATATGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTTGGAGCATCATCGGAGA
* * * *
12183377 ACCTAACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGAGGGTGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC--GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
12183442 CGATTGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
12183507 ACCCCTTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TGGAAA
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAA
12183571 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTA-CTGAATTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTT
* ** *
12183635 TATGCACACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGACA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
12183700 AAGTTTTAAAAAATCCCAAACCGCAAGAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTC
451 AAATTTTAAAAAATCCCAAACCGTAA-AAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12183765 TTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12183830 CATTGGTGTGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTG
580 CATTGGT-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
12183895 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCATTCGTTTCGTCGG-TTGGCT
644 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCG--C--TCGTTTCGTCGGTTTGGCT
* *
12183959 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCAGACCAAGGGTTGTAGTAGCAGGATC
705 TAGGCATACGGAGTTCATTCCCAATCTAAGA-TAGAACCAGACCAAGGGTTGCAGTAGCAGGATC
* * * * *
12184023 GGCAGCACGCAAAGGGGGATCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCCCTGGCCGATTGA
769 GGCAGCACGCAAAGCGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCCCTGGCCGACTGA
* * * *
12184088 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAATCTAA
834 ACGCACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * *
12184147 GCATACAGTGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
12184212 CTCGGGCATATGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATTGTTGGAGCATCGCCGGAGA
65 CTCGGGCATATGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTTGGAGCATCATCGGAGA
* * * *
12184277 ACCTGCCCGACAGCATTGGGGTTCCGGCGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGCCGGGGGGGTGTGCGCACATGATGTGC
12184342 GATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
194 GATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
12184407 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
12184472 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGATTTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
12184537 GCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAA
389 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAA
* *
12184601 ATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCAAACCGT-AAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
12184666 GCCATGAAACTTCATGTGCAGGCTTAAAGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
12184731 TTGGCTTGCAGAAATATGATGATGTGCCTAAACACACCTACCACTCGATCGATTCC-CGGCTTGC
582 TTGG-TTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCCACGGCTTGC
** * * * * * ** *
12184795 GCATCCCACCCCTCTGGCCGAC-TGAGCGCACG--CA--TGCTCGTTTCAT-GGGATGACTTAGG
645 GCATCCCGTCTCTCTGGCCGACGT-AGTGCCCGCCCACCCGCTCGTTTCGTCGGTTTGGCTTAGG
*
12184854 CATACGGAGTTCATTCCCAGTCTAA
709 CATACGGAGTTCATTCCCAATCTAA
12184879 CTATACGGAG
Statistics
Matches: 1443, Mismatches: 168, Indels: 47
0.87 0.10 0.03
Matches are distributed among these distances:
890 2 0.00
891 41 0.03
893 1 0.00
895 3 0.00
896 136 0.09
897 453 0.31
898 22 0.02
899 458 0.32
900 314 0.22
901 13 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATATGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTTGGAGCATCATCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCAAACCGTAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
TTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTTGGCTTAGGCATACGG
AGTTCATTCCCAATCTAAGATAGAACCAGACCAAGGGTTGCAGTAGCAGGATCGGCAGCACGCAA
AGCGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCCCTGGCCGACTGAACGCACGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
Found at i:12184885 original size:26 final size:26
Alignment explanation
Indices: 12184855--12184904 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
12184845 TGACTTAGGC
12184855 ATACGGAGTTCATTCCCAGTCTAACT
1 ATACGGAGTTCATTCCCAGTCTAACT
12184881 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
12184905 GATCAGATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAACT
Found at i:12185456 original size:732 final size:732
Alignment explanation
Indices: 12184047--12185533 Score: 2343
Period size: 732 Copynumber: 2.0 Consensus size: 732
12184037 GGGGATCCGG
** * * *
12184047 TCGATCCCCGGCTTGCGCATCCTGCCCCCCTGGCCGATTGAGCGCCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCCACCCCCCTGGCCGACTGAGCGCACGCACGCTCGTTTCATGGG
* * * *
12184112 TTGACTTAGGCATATGGAGTTCATTCCTAATCTAAGCATACAGTGTTCATTCCCAGTCTAAGATC
66 ATGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
**
12184177 AGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTCTCT
131 AGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCAAGCATATGCTGGTGCCGCATTTCTCT
* * * * * *
12184242 TCGTCGGGGCACCATTGTTGGAGCATCGCCGGAGAACCTGCCCGACAGCATTGGGGTTCCGGCGA
196 TCGTCAGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACAGCATTAGGCTTCCGGCGA
*
12184307 TCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTG
261 TCAGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTG
12184372 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
326 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
12184437 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATC
391 GATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
12184502 TTGTACACTTTGAGTTTTTGGCTGATTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCATGTC
456 TTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTCCATGCCAACAAAAATACAAGGATCATGTC
** *
12184567 TACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTT
521 TAAAAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
* *
12184632 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGCAGGCTTAAAGGA
586 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGA
* *
12184697 CCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCTTGCAGAAATATGATGATGTGCCTAA
651 CCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
12184762 ACACACCTACCACTCGA
716 ACACACCTACCACTCGA
* * *
12184779 TCGATTCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCACGCATGCTCGTTTCATGGG
1 TCGATCCCCGGCTTGCGCATCCCACCCCCCTGGCCGACTGAGCGCACGCACGCTCGTTTCATGGG
* *
12184844 ATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-CTATACGGAGTTCATTCCCAGTCTAAGAT
66 ATGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC-ATACAGAGTTCATTCCCAGTCTAAGAT
* * * * * *
12184908 CAGATCGGACCGAGGGTTGGGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGTCGCATTTCTC
130 CAGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCAAGCATATGCTGGTGCCGCATTTCTC
* * * * *
12184973 TTTGTCAGGGCACCATCGCTGGAGCTTCGCCGGAGAACCTGACCGACGGCATTAGGCTTTCGGTG
195 TTCGTCAGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACAGCATTAGGCTTCCGGCG
* * *
12185038 ATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
260 ATC-AGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATCGGTGCTGGTACTTGGCCCTTATAT
*
12185103 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTAC
324 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
12185167 AGGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
389 AGGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAA
12185232 TCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTCCATGCCAACAAAAATACAAGGATCATG
454 TCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTCCATGCCAACAAAAATACAAGGATCATG
*
12185297 TCTAAAAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
519 TCTAAAAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAG
*
12185361 TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AA
583 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAA
* *
12185425 GTGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
648 G-GACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * *
12185490 CTAAACCCACCTACCACCCTA
712 CTAAACACACCTACCACTCGA
** * *
12185511 TAAATCCACGGCTCGCGCATCCC
1 TCGATCCCCGGCTTGCGCATCCC
12185534 GTCTCTCTGG
Statistics
Matches: 687, Mismatches: 64, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
731 4 0.01
732 588 0.86
733 95 0.14
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (732 bp):
TCGATCCCCGGCTTGCGCATCCCACCCCCCTGGCCGACTGAGCGCACGCACGCTCGTTTCATGGG
ATGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCAAGCATATGCTGGTGCCGCATTTCTCT
TCGTCAGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACAGCATTAGGCTTCCGGCGA
TCAGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTCCATGCCAACAAAAATACAAGGATCATGTC
TAAAAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGA
CCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
ACACACCTACCACTCGA
Found at i:12187294 original size:898 final size:890
Alignment explanation
Indices: 12184792--12187430 Score: 3324
Period size: 898 Copynumber: 3.0 Consensus size: 890
12184782 ATTCCCGGCT
* * * * * * * * * *
12184792 TGCGCATCCCACCCCTCTGGCCGACTGAGCGCACGCATGCTCGTTTCATGGGATGACTTAGGCAT
1 TGCGAATCCCGCCTCTCTGGCCGGCTGAGCGCCCGCACGTTCATTGCATGGGTTGACTTAGGCAT
* *
12184857 ACGGAGTTCATTCCCAGTCTA-ACTATACGGAGTTCATTCCCAGTCTAAGATC-AGATCGGACCG
66 ACAGAG-TCATTCCCAGTCTAGA--ATACGAAGTTCATTCCCAGTCTAAGATCGA-ATCGGACCG
* * * * * *
12184920 AGGGTTGGGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGTCGCATTTCTCTTTGTCAGGGCA
127 AGGGTTTGCG-AGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGTATTT-TTTTTGTCGGGGCA
* * * **
12184985 CCATCG-CTGGAGCT-TCGCCGGAGAACCTGACCGACGGCATTAGGCTTTCGGTGATCGGGGGGG
190 CCATCGTC-GGAG-TAT-GCCGGAGAA-CTGA-CGGCGGCATTAGGGTTCCGACGATCGGGGGGG
* *
12185048 TCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
250 -CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTA
*
12185113 TCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGC
313 TCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
12185178 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
378 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * **
12185243 TTGAGTTTTTAGCTGAATGTTTTTGTCCATGCCAACAAAAATACAAGGATCATGTCTAAAAAGTT
443 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
* *
12185308 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
508 TGGGGCCAAAACTCCTTCAG-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
12185373 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTAT
572 TGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
12185438 GAATTTACAATCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
637 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
** * * * *
12185503 CCACCCTATAAATCCACGGCTCGCGCATCCCGTCTCTCTGGTCGGCCTAGTG-C-CCACCCG-CC
702 CCACCCTATCGATCCACGGCTAGCACATCCTGTCTCTCTGGTCGGCGTAGTGCCGCCACCCGCCC
* * * *
12185565 G---CTCGTTTCGTCGGTTGGCTCAGGCATACGGAATTCATTCCTAGTCTAAGATCGGACCGAAC
767 GCCCCTCGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC
* * **
12185627 TGAGGGTTGCGGTAGTAGGATCGGCAGCACAGAGAGGGGGTCCCAGCCGATCCTTGACA
832 TGAGGGTTGCGGCAGTAGGATCGGCAGCACAGAGAGGGGGACCCAGCCGATCCCCGACA
*** * *
12185686 TGTTCATCCCGCCTCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCAT
1 TGCGAATCCCGCCTCTCTGGCCGGCTGAGCGCCCGCACGTTCATTGCATGGGTTGACTTAGGCAT
* * * * * * *
12185751 A-AGGTGGTTATTCCCAGTCTAAGCATACGAAGTTCATTACCAATCTAAGATCGGATCGGATCGA
66 ACA-G-AGTCATTCCCAGTCT-AGAATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGACCGA
*
12185815 GGG-TTGCGACGGCACATGCTGGGCTC-GAGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGC
128 GGGTTTGCGA--GCACATGCTGGGCTCAG-GCATGTGCTGGTGTCGTATTTTT-TTTGTCGGGGC
* * * * *
12185878 ACCATCGTCGGAG-A-ACCTG-G--CT---GGCGGCGTTAGGGTTCCGACTATCCGGGGGGCC-G
189 ACCATCGTCGGAGTATGCCGGAGAACTGACGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGG
12185934 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCT
254 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCT
* * *
12185999 CATCAAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAG
318 CATC-AAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
12186064 TAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTATTCAAATGGCCACAAAATCTTGTACACTTC
381 TAGCCATTAAAGTGTCTGAAATGGGGACACCTTT-TTCAAATGGTCACAAAATCTTGTACACTTC
* *
12186128 GAGTTTTTAGATGAATTTTTTTATGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
445 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
* * * * *
12186193 GGGCCAAAACTCCTTCCAGAAAAAATTTAAAAAATCCTGAA-CTCAAAAAGTTTCCAAAATCGTG
510 GGGCCAAAACTCCTT-CAGAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
12186257 AAAAATAGAAAATGAGTCATCCTT-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-T-TG
574 AAAAATAGAAAATGAGTCAT-CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
12186319 CAAATTTACAAGCAATAAAAATGGCATTGGCATGTC-GAAATATGAAGATGTGCCTAAACCCACC
638 --AATTTACAAGCCATAAAAATGGCATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACC
* * *
12186383 TACCACCCTATCGATCCACGGCTAGCACATCCTGTTTCTCTGGCCGGCGTAGTGCCTGTCCTCCC
700 TACCACCCTATCGATCCACGGCTAGCACATCCTGTCTCTCTGGTCGGCGTAGTGCC-G-CCACCC
* *
12186448 GCCCGCCCACTCGTTTCGTCGGTTGGCAAAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
763 GCCCGCCC-CTCGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
12186513 CAGATC-GAGGGTTGCGGCAGTAGGATTGGCAGCAC-GCAGAGGGGGACCCGGTCGATCCCCGAC
827 C-GAACTGAGGGTTGCGGCAGTAGGATCGGCAGCACAG-AGAGGGGGACCCAGCCGATCCCCGAC
*
12186576 T
890 A
* * * **
12186577 TGCGAATCCCGCC-CTTTGGCCGGTTGAGCGGCCGCACGTTCATTGGGT-GGTTCGACTTAGGCA
1 TGCGAATCCCGCCTCTCTGGCCGGCTGAGCGCCCGCACGTTCATTGCATGGGTT-GACTTAGGCA
* *
12186640 TACAGAGTCATGTCCTAGT-TAGAATACGTAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAG
65 TACAGAGTCAT-TCCCAGTCTAGAATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAG
* * *
12186704 GGTTTGTGATGCACATGCTGGGCTCAGGCATGTGCTGGTCTCGTATTTTTTTTGTCGGAGGCAAC
129 GGTTTGCGA-GCACATGCTGGGCTCAGGCATGTGCTGGTGTCGTATTTTTTTTGTCGG-GGCACC
*
12186769 ATACGTCGGAGTATGGCCGGAGAACTGACGGCGGCATTGGGGTTCCCGACGATCGGGGGGGCCAT
192 AT-CGTCGGAGTAT-GCCGGAGAACTGACGGCGGCATTAGGGTT-CCGACGATCGGGGGGGCC--
*
12186834 TGGGGGGTGTG-GCACATGGATGTCGCCGATGGTTGCTGGTACTTGGCCCTTATATTGG-CCCTA
252 -GGGGGGTGTGCGCACAT-GATGT-G-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTA
* *
12186897 T-CCTC-TCAAACCTCGAGAACTCACATCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
313 TCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
12186960 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACA
378 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
12187025 TCGAGTTTTCAGCTGAATTTTTTTATGCATGCCAACAAAAATACATGGATCACGTCTACCAA-TT
443 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
* * * * *
12187089 CGGGGCCAAAACTCCTTCTGAAAAATTTTTAAAAATCCCAAACCGCAAAAAGTTTAAAAAATCAT
508 TGGGGCCAAAACTCCTTCAGAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* * *
12187154 GAAAAATAGAAAATAAGTCATCTTGCCATTAAACTTCACGTGAAGACTTAAGGGACCATTGTATG
573 GAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * *
12187219 ATTTTACTAGCCATAAAAATGGCATCGGCATGCAAAAATATGAAGATGTGCCCAAACCCACCTAC
638 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
12187284 AACCCTATCGATCCACGGCTTGCACAT-CTCGTCTATCTGGTCGGTGTAATGCCCGCC-CGACCG
703 CACCCTATCGATCCACGGCTAGCACATCCT-GTCTCTCTGGTCGGCGTAGTG-CCGCCAC--CCG
* * *
12187347 CCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACC
764 CCCGCCC-CTCGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
**
12187412 GGGCTGAGGGTTGCGGCAG
828 GAACTGAGGGTTGCGGCAG
12187431 CACATGCTGG
Statistics
Matches: 1516, Mismatches: 163, Indels: 128
0.84 0.09 0.07
Matches are distributed among these distances:
880 2 0.00
881 67 0.04
882 199 0.13
883 216 0.14
884 2 0.00
886 6 0.00
887 12 0.01
888 84 0.06
889 23 0.02
890 50 0.03
891 113 0.07
892 7 0.00
893 5 0.00
894 162 0.11
895 5 0.00
896 1 0.00
897 30 0.02
898 277 0.18
899 168 0.11
900 23 0.02
901 2 0.00
902 10 0.01
903 20 0.01
904 3 0.00
905 29 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
TGCGAATCCCGCCTCTCTGGCCGGCTGAGCGCCCGCACGTTCATTGCATGGGTTGACTTAGGCAT
ACAGAGTCATTCCCAGTCTAGAATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGG
TTTGCGAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGTATTTTTTTTGTCGGGGCACCATCG
TCGGAGTATGCCGGAGAACTGACGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT
CCTTCAGAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
TGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTAGCACATCCTGTCTCTCTGGTCGGCGTAGTGCCGCCACCCGCCCGCCCCTCGTTTCGT
CGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCA
GTAGGATCGGCAGCACAGAGAGGGGGACCCAGCCGATCCCCGACA
Found at i:12188046 original size:707 final size:708
Alignment explanation
Indices: 12186663--12188110 Score: 1914
Period size: 707 Copynumber: 2.0 Consensus size: 708
12186653 CCTAGTTAGA
* * *
12186663 ATACGTAGTTCATTCCCAGTCTAAGATC-GAATCGGACCGAGGGTTTGTGATGCACATGCTGGGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGAACCGGACCGAGGGTTTGGGATGCACATGCTGGGC
*
12186727 TCAGGCATGTGCTGGTCTCGTATTTTTTTTGTCGGAGGCAACATACGTCGGAGTATGGCCGGAGA
66 TCAGGCATGTGCTGGTCTCGTATTTTTTTCGTCGGAGGCAACATACGTCGGAGTA-GGCCGGAGA
*
12186792 ACTGACGGCGGCATTGGGGTTCCCGACGATCGGGGGGGCCATTGGGGGGTGTGGCACATGGATGT
130 AC--ACGACGGCATTGGGGTTCCCGACGATCGGGGGGGCC--TGGGGGGTGTGGCACATGGATGT
* * *
12186857 CGCCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCTATCCTCTCAAACCTCGAGAACTCACA
191 CGCCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTATCCTCACAAACCTCGAGAACTCACA
* * *
12186922 TCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
256 CCCATTAAAGAGCATTCGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
12186987 GGACACCTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTCAGCTGAATTTTTTTATG
321 GGACACCTTTTTCAAATAGTCACAAAATCTTGTACACATCGAATTTTCACCTGAATGTTTTTATC
* *
12187052 CATGCCAACAAAAATACATGGATCACGTCTACCAATTCGGGGCCAAAACTCCTTCTGAAAAATTT
386 CATGCCAACAAAAATACAAGGATCACGTCTACCAATTCGGGGCCAAAACTCCTTCCGAAAAATTT
* *
12187117 TTAAAAATCCCAAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAATAAGTCATCTTGCCA
451 TAAAAAATCCCAAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCA
* *
12187182 TTAAACTTCACGTGAAGACTTAAGGGACCATTGTATGATTTTACTAGCCATAAAAATGGCATCGG
516 TTAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGG
* *
12187247 CATGCAAAAATATGAAGATGTGCCCAAACCCACCTACAACCCTATCGATCCACGGCTTGCACATC
581 CATGCAAAAATATGAAGATGTGCCCAAACCCACCGACAACCCAATCGATCCACGGCTTGCACATC
* * * * *
12187312 TCGTCTATCTGGTCGGTGTAATGCCCGCCCGACCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
646 CCGTCTATCTGGCCGGCGTAATGCCCG--C--CCGCCCGCCCGCTAGTTTCGTCGGTTGGCTTAG
12187377 GC
707 GC
* * *
12187379 ATGCGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGGCTGAGGG-TTGCGGCA-GCACATGCTGG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGAACCGGACCGAGGGTTTG-GG-ATGCACATGCTGG
* * *
12187441 GCTCGGGCATGTGCTGGT-TCCGTATTTTTCTTCGTCGG-GGCACCAT-CGTCGGAG-A-G-C-T
64 GCTCAGGCATGTGCTGGTCT-CGTATTTTT-TTCGTCGGAGGCAACATACGTCGGAGTAGGCCGG
* **
12187499 TG-AC-CGACGGCATTGGGGTT-CCGGTGATCGGGGGGGCC-GGGGGGTGTGCGCACAT-GATGT
127 AGAACACGACGGCATTGGGGTTCCCGACGATCGGGGGGGCCTGGGGGGTGTG-GCACATGGATGT
12187559 -G-CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCAACAAACCTCGAGAACT
191 CGCCAATGGGTGCTGGTACTTGGCCCTTATATTGG--CCCTAT-CCTC-ACAAACCTCGAGAACT
* *
12187622 -ATCACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTCCTGTCAGTAGCCATTAAAGTGTCTG
252 CA-CA-CCCATTAAAGAGCATTCGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTG
* * *
12187686 AAATGGGGACA-CTTTTGTCAAATAGTCACAAAATTTTGTACACTTCGAATTTTTACCTGAATGT
315 AAATGGGGACACCTTTT-TCAAATAGTCACAAAATCTTGTACACATCGAATTTTCACCTGAATGT
* *
12187750 TTTTGTCCATTG-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
379 TTTTATCCA-TGCCAACAAAAATACAAGGATCACGTCTACCAA-TTCGGGGCCAAAACTCCTTCC
** * * ** * *
12187814 GAAAAAATTTTAAAAAATCCTGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAGAACGAGT
442 G-AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACAAGT
** *
12187879 TGTCTTG-CATTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
506 CATCTTGCCATT-AAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * ** *
12187943 AATGGCATTGGCATGCAGAAATATGAAGTTGTGCGTAAACCCACCGACCACCCAATCGATCCACG
570 AATGGCATCGGCATGCAAAAATATGAAGATGTGCCCAAACCCACCGACAACCCAATCGATCCACG
* * * *
12188008 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTAGTTTTGTCGGTT
635 GCTTGCACATCCCGTCTATCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGCTAGTTTCGTCGGTT
12188073 GGCTTAGGC
700 GGCTTAGGC
*
12188082 ATACGGAGTTCATTCTCAGTCTAAGATCA
1 ATACGGAGTTCATTCCCAGTCTAAGATCA
12188111 AACGAGATTA
Statistics
Matches: 647, Mismatches: 68, Indels: 47
0.85 0.09 0.06
Matches are distributed among these distances:
700 30 0.05
701 1 0.00
702 21 0.03
703 70 0.11
704 22 0.03
705 158 0.24
706 41 0.06
707 196 0.30
709 2 0.00
710 1 0.00
711 1 0.00
712 1 0.00
714 1 0.00
715 12 0.02
716 81 0.13
717 9 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (708 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGAACCGGACCGAGGGTTTGGGATGCACATGCTGGGC
TCAGGCATGTGCTGGTCTCGTATTTTTTTCGTCGGAGGCAACATACGTCGGAGTAGGCCGGAGAA
CACGACGGCATTGGGGTTCCCGACGATCGGGGGGGCCTGGGGGGTGTGGCACATGGATGTCGCCA
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTATCCTCACAAACCTCGAGAACTCACACCCAT
TAAAGAGCATTCGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CCTTTTTCAAATAGTCACAAAATCTTGTACACATCGAATTTTCACCTGAATGTTTTTATCCATGC
CAACAAAAATACAAGGATCACGTCTACCAATTCGGGGCCAAAACTCCTTCCGAAAAATTTTAAAA
AATCCCAAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATTAAA
CTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCATGC
AAAAATATGAAGATGTGCCCAAACCCACCGACAACCCAATCGATCCACGGCTTGCACATCCCGTC
TATCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGCTAGTTTCGTCGGTTGGCTTAGGC
Found at i:12188278 original size:26 final size:26
Alignment explanation
Indices: 12188242--12188291 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12188232 GACATAGGCT
12188242 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
12188268 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12188292 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:12189180 original size:26 final size:26
Alignment explanation
Indices: 12189140--12189218 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
12189130 GTTGACTTAG
12189140 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
12189166 GCATACGGAGATCATTCTCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
12189192 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12189218 G
1 G
12189219 ATCAGACCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12189674 original size:919 final size:917
Alignment explanation
Indices: 12187377--12190074 Score: 3020
Period size: 919 Copynumber: 3.0 Consensus size: 917
12187367 GTTGGCTTAG
* *** ** * * *
12187377 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGATGCGACAGCACATGCTAGG
* * * * ** * * * ***
12187442 CTCGGGCATGTGCTGGTTCCGTATTTTTCTTCGTC-GGGGCA--C---CATCGTCGGAGAGCTTG
66 CTCAGGCACGTGCCGGTGCCACATTTTTCTTCGCCAGGGACACCCAAGCATCG-CGGAGAACCAA
* ** * ** * * *
12187501 ACC-GACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATG
130 ACCAGA-GGCATTGGGGTTACGACGATCGGGCGGAACGGGGGGTGTGCGAACATGATGTGCGACG
* * * *
12187565 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCAACAAACCTCGAGAACT-ATCACCC
194 GG-GCTGATACTTGGCCCTTATATTGGCCCCCTACACCTCATCAAACCTCAAGAACTCA-CACCC
** * * * *
12187629 CCTTAAAGAGCATTCGAGATTTTACAGGTTTCCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGG
257 CCGGAAAGAACATTCAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGG
* * * * * * *
12187694 ACACTTTTGTCAAATAGTCACAAAATTTTGTACACTTCGAATTTTTACCTGAATGTTTTTGTCCA
321 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * *
12187759 TTGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
386 TCCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* * * ** * * *
12187824 TAAAAAATCCTGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAGAACGAGTTGTCTTG-CA
451 AAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCATCAAAAATAGAAAACGAGTCGTCTTGCCA
*
12187888 TTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
516 -TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTG
* ** * * *
12187953 GCATGCAGAAATATGAAGTTGTGCGTAAACCCACCGACCACCCAATCGATCCACGGCTTGCGCAT
580 GCAGGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * * *
12188018 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTAGTTTTGTCGGTTGGCTTAGGCA
645 CCCGTCTCTCAGGCCGACATAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCATAGGCA
* * ** * * *** * * ** * *
12188083 TACGGAGTTCATTCTCAGTCTAAGATCAAACGAGATTAAGGGTTGTGGCAGGAGGATTAGTAGCA
710 TACGAAGTTCATTCCCAACCTAAGATCAAACCAAACCGAGGGTTGCGACAATAGGAATAGCAGCA
*** * * * * **
12188148 CAG-AGAGGGGGACCTGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCGACTGAGCGTCC
775 C-GCAGAGGGGGACCCAACCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * * * *
12188212 GCACGCTCGTTTCGTGG---G--TT-GACATA-GG--------------CT-----TACGGAGTT
839 ACAAGCTCATTTCGTGGCTTGACTTAGGCATACGGACTTCATTCCCAATCTAAGCATACGGAGAT
*
12188251 CATTCCCAGTCTAA
904 CATTCCCAATCTAA
* ** * * *
12188265 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGATGCGACAGCACATGCTAGG
* *
12188330 CTCAGGCATGTGCCGGTGCCACATTTTTCTTCGCCGGGGAACCATCGCCAAAGCATCGTCGGAGA
66 CTCAGGCACGTGCCGGTGCCACATTTTTCTTCGCCAGGG-A-CA-C-CC-AAGCATCG-CGGAGA
* **
12188395 ACCAAACCAGCGGCATTGGGGTTACGGTGATCGGGCGGAACGGGGGGTGTGCGAACATGATGTGC
125 ACCAAACCAGAGGCATTGGGGTTACGACGATCGGGCGGAACGGGGGGTGTGCGAACATGATGTGC
* * *
12188460 GATGGGGCTGATACTTGGCCCTTATATTGGTCCCCTATACCTCATCAAACCTCAAGAACTCACAC
190 GACGGGGCTGATACTTGGCCCTTATATTGGCCCCCTACACCTCATCAAACCTCAAGAACTCACAC
* *** * * * *
12188525 CTCTTTAAAGAGCATTCAAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTTGAAATTG
255 CCCCGGAAAGAACATTCAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
12188590 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
320 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
12188655 ATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
385 ATCCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* * * *
12188720 TTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
450 TAAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCATCAAAAATAGAAAACGAGTCGTCTTGCC
*
12188785 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
515 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTG
* * * *
12188850 GCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCTCAT
580 GCAGGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
**
12188915 CCCGTCTCTCTA-GCCGATGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCAT
645 CCCGTCTCTC-AGGCCGACATAGTG-CT---CGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCAT
* * * *** *
12188979 AGGCATACGGAGTTCATTCCCAATCTAAGGTTGGACCAAACTGAGGGTTGCGACAATAGG-ATCA
705 AGGCATACGAAGTTCATTCCCAACCTAAGATCAAACCAAACCGAGGGTTGCGACAATAGGAAT-A
* ** * *
12189043 GCAGCATGCAGAGGGGGACCCGGCTGATCCTC-GGCTTTCGCATCCCGCCCCTCTGGCCGGCTGA
769 GCAGCACGCAGAGGGGGACCCAACCGATCC-CAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* ** * * * *
12189107 GCTCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAC
833 GCACCCACAAGCTCATTTCGTGGCTTGACTTAGGCATACGGACTTCATTCCCAATCTAAGCATAC
*
12189172 GGAGATCATTCTCAATCTAA
898 GGAGATCATTCCCAATCTAA
* * *
12189192 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGATGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGATGCGACAGCACATGCTAGG
* * * ** * *
12189257 GTCGGGCACGTGCTGGTGCCGTATTTTTCTTCGCCAGGG-CA-CC-ATCA-C-CGGAGAACCTAA
66 CTCAGGCACGTGCCGGTGCCACATTTTTCTTCGCCAGGGACACCCAAGCATCGCGGAGAACCAAA
* * * ** *
12189317 CTAGAGGCATTGGGGTTCCGACGATCGGGGGGGCCGGTGGGTTGTGC-ACACATGATGTGCGACG
131 CCAGAGGCATTGGGGTTACGACGATCGGGCGGAACGG-GGGGTGTGCGA-ACATGATGTGCGACG
* * *
12189381 GGTGCTGGTACTTTGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCAAGAACTCACACCCC
194 GG-GCTGATACTTGGCCCTTATATTGGCCCCCTACACCTCATCAAACCTCAAGAACTCACACCCC
** *
12189446 CGGAAAGAACATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
258 CGGAAAGAACATTCAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGA
*
12189511 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGAATTTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
12189576 CCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTA
387 CCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTA
* *
12189641 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATCAAAAATAGAAAACGAGTTGTCTTGCCAT
452 AAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCATCAAAAATAGAAAACGAGTCGTCTTGCCAT
12189706 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGC
* *
12189771 ATGCAGAAATATGAAAATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
582 AGGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
12189836 CGTCTCTCAGGGCGGCATAGTGCTCGCCCGCCCGCCCGCTTGTTTCGTCTGTTGGCTTAGGCATA
647 CGTCTCTCAGGCCGACATAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCATAGGCATA
* * *** * *
12189901 CGAAGTTCATTCCTAGCCTAAGATCAAACTGGACCGAGGGTTGCGACAGTAGGAATGGCAGCACG
712 CGAAGTTCATTCCCAACCTAAGATCAAACCAAACCGAGGGTTGCGACAATAGGAATAGCAGCACG
* * *
12189966 CAGAGGGGGTCCCAACCGATCCCAGGCTTGCGCGTCCCGCCTCTCTGGCCGGCTGAGCACCCACA
777 CAGAGGGGGACCCAACCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACA
* *
12190031 AGCTCATTTTGTGTCTTGACTTAGGCATACGGACTTCATTCCCA
842 AGCTCATTTCGTGGCTTGACTTAGGCATACGGACTTCATTCCCA
12190075 GTCAAAGATA
Statistics
Matches: 1555, Mismatches: 200, Indels: 83
0.85 0.11 0.05
Matches are distributed among these distances:
888 89 0.06
889 3 0.00
891 2 0.00
895 1 0.00
897 316 0.20
898 112 0.07
899 71 0.05
900 3 0.00
901 149 0.10
902 1 0.00
904 1 0.00
906 2 0.00
907 5 0.00
908 2 0.00
914 1 0.00
915 176 0.11
916 43 0.03
917 24 0.02
918 111 0.07
919 329 0.21
921 2 0.00
922 2 0.00
924 2 0.00
927 108 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (917 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGATGCGACAGCACATGCTAGG
CTCAGGCACGTGCCGGTGCCACATTTTTCTTCGCCAGGGACACCCAAGCATCGCGGAGAACCAAA
CCAGAGGCATTGGGGTTACGACGATCGGGCGGAACGGGGGGTGTGCGAACATGATGTGCGACGGG
GCTGATACTTGGCCCTTATATTGGCCCCCTACACCTCATCAAACCTCAAGAACTCACACCCCCGG
AAAGAACATTCAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCA
AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAA
AATCCCGAACCGTAAAAAGTTTAAAAAATCATCAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCAGGC
AGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCAGGCCGACATAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCATAGGCATACGAA
GTTCATTCCCAACCTAAGATCAAACCAAACCGAGGGTTGCGACAATAGGAATAGCAGCACGCAGA
GGGGGACCCAACCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACAAGCT
CATTTCGTGGCTTGACTTAGGCATACGGACTTCATTCCCAATCTAAGCATACGGAGATCATTCCC
AATCTAA
Found at i:12190936 original size:26 final size:26
Alignment explanation
Indices: 12190900--12190952 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12190890 ATTGAGTTAG
12190900 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12190926 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12190952 G
1 G
12190953 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12191822 original size:26 final size:26
Alignment explanation
Indices: 12191792--12191844 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12191782 GTTGACTTAG
*
12191792 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
* *
12191818 GCATACGGAGTTCATTGCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
12191844 G
1 G
12191845 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:12192113 original size:892 final size:891
Alignment explanation
Indices: 12190172--12192562 Score: 3414
Period size: 892 Copynumber: 2.7 Consensus size: 891
12190162 GACCGGTGGT
* *
12190172 ATTGGGGTTCCAACGATAG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
1 ATTGGGGTTCCGACGATCGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
12190236 CTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
12190301 ATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
12190366 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAA
196 AAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
***
12190431 ATACAAGGATCACGTCTACCAAGTTTACAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
261 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
** * *
12190496 GAACCGCCAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
326 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
12190561 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCGGAAAT
391 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * * *
12190626 ATGAAGATGTGCCCAAACCCACCTACCACCCTATCAATCCACTGCTTGCGCAACCCGTCTCTCGG
456 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
12190691 GCCAGTGAAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
521 GCC-G-G-CGT---AG--TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
12190756 TCCCAATCTAAGATTAGACTGGACTGAGGGTTGCAGCAGCAGGATCGACAGCACGCAAAGGGGGA
578 TCCCAATCTAAGATCAAACCGGACTGAGGGTTACAGCAGCAAGATCGACAGCACGCAAAGGCGAA
* ** *
12190821 CACGAATGATCCTCAGCTTGTGCACCCCGCCCCTCTGGCCGACTGAACGCCGACACGCTCGTTTC
643 CACGAATGATCCCCAGCTTGCACACCCCGCCCCTCTGGCCGACTGAACGCCGACACGCTCATTTC
* * * *
12190886 GTGAATTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTA
708 ATGAATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTA
** **
12190951 AGATCGGACCAGACCGAGGGTTGCGACAACACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATT
773 AGATCGGACCAGACCGAGGGTTGCGACAACACATGCTGGGCTCAGGCATGTGCTCATGCCACATT
* * *
12191016 TTTCTTCGTCGGGGCACCATCGCCGGAGCAACATCAGAGAACCTGACCAGTGAC
838 TTTCTTCCTCGGGCCACCATCGCCGGAGCAACACCAGAGAACCTGACCAGTGAC
* * ** *
12191070 GTTGGGGCTCCGGTGATCG-GGGTGCCGGGGAGGGTGTGCGCACATCATGTGCGATGGGTGCTGG
1 ATTGGGGTTCCGACGATCGAGGG-GCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
12191134 TACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
64 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
12191199 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTTGAAATGGGGATACTTTTT
129 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
** *
12191264 TCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAATTGAATTTTTTTGTCCATGCCAACAA
194 TCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
12191329 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCACAACTCCTTTCGAAAAAA-TTTAAAAGAAT
259 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA-AAT
*
12191393 CTCGAACCGTAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
323 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
12191458 CACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAGAAATGGCATTGGCATGCAGA
388 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
12191523 AATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTTGCGCATCCCATCTCT
453 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
12191588 CTGGCCGGCGTAGTGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCA
518 CTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * * * *
12191653 GTCTAAGATCAAACCGGACTGAGGGTTATGGCAGCAAGATCGGCAGCACGTAGAGGCGAACCCGA
583 ATCTAAGATCAAACCGGACTGAGGGTTACAGCAGCAAGATCGACAGCACGCAAAGGCGAACACGA
* * * * *
12191718 CTGATCCCCGGCTTGCACATCCTGTCCCTCTGGCCGACT-AAGCGCCCG-CACGCTCATTTCATG
648 ATGATCCCCAGCTTGCACACCCCGCCCCTCTGGCCGACTGAA-CG-CCGACACGCTCATTTCATG
** *
12191781 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCAAGTCTAAGA
711 AATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGA
* * * * * *
12191846 TCGGACCGGACCGAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGTGCTCATGCCACATTTTT
776 TCGGACCAGACCGAGGGTTGCGACAACACATGCTGGGCTCAGGCATGTGCTCATGCCACATTTTT
* * * * *
12191911 CTTCACT-GGGCCTCCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG-G-C
841 CTTC-CTCGGGCCACCATCGCCGGAGCAACACCAGAGAACCTGACC-A-GTGAC
*
12191962 ATTGGGGTTCCGACGATCGATGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGGT
1 ATTGGGGTTCCGACGATCGA-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
12192027 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
12192092 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * * *
12192157 TAGAT-AGTCACAAAATCTTGTGCGCTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAA
195 CAAATGA-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * ** ** *
12192221 AAATACAAGGATCATGTGTACCGTGTTTGGGTTCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
259 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
12192286 CCGAACCGTAAAAAGTTTTAAAAATCGTGACAAATAGAAAACGAGTCATCTTGGCATGAAACTTC
324 TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
12192351 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
389 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
*
12192416 ATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
454 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
12192481 TGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCATTTAGTCGGTTGGCCTGGGCATACGGAGTTC
519 TGGCCGGCGTAGT----GCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
12192546 ATTCCCAATCTAAGATC
576 ATTCCCAATCTAAGATC
12192563 GAATTGGACC
Statistics
Matches: 1332, Mismatches: 141, Indels: 38
0.88 0.09 0.03
Matches are distributed among these distances:
891 3 0.00
892 767 0.58
893 20 0.02
894 5 0.00
896 5 0.00
897 2 0.00
898 18 0.01
899 16 0.01
900 496 0.37
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
ATTGGGGTTCCGACGATCGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATC
TAAGATCAAACCGGACTGAGGGTTACAGCAGCAAGATCGACAGCACGCAAAGGCGAACACGAATG
ATCCCCAGCTTGCACACCCCGCCCCTCTGGCCGACTGAACGCCGACACGCTCATTTCATGAATTG
ACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGA
CCAGACCGAGGGTTGCGACAACACATGCTGGGCTCAGGCATGTGCTCATGCCACATTTTTCTTCC
TCGGGCCACCATCGCCGGAGCAACACCAGAGAACCTGACCAGTGAC
Found at i:12193173 original size:702 final size:703
Alignment explanation
Indices: 12191818--12193277 Score: 2198
Period size: 702 Copynumber: 2.1 Consensus size: 703
12191808 CCCAGTCTAA
* * * *
12191818 GCATACGGAGTTCATT-GCAAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAA-TCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
12191882 GCTCGGGCATGTGCTCATGCCACATTTTTCTTCACTGGGCCTCCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTCATGCCACATTTTTCTTCACCGGG-------CGTC-GACCATCGCCGGAG
*
12191947 AACCTGACCGACGGCATTGGGGTTCCGACGATCGATGGGGCCGGGGGGGTGTGCGCACATGATGT
122 AACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
12192012 GCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
187 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCA
*
12192077 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
252 CACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
12192142 TGGGGACACTTTTTTTAGATAGTCACAAAATCTTGTGCGCTTCGAGTTTTTAGCTGATTTTTTTT
317 TGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTT
*** *
12192207 GTGCATGCCAAAAAAAATACAAGGATCATGTGTACCGTGTTTGGGTTCAAAACTCCTTCCAAAAA
382 GTGCATGCCAAAAAAAATACAAGGATCATGTGTACAAAGTTTGGGTGCAAAACTCCTTCCAAAAA
* * * * *
12192272 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGACAAATAGAAAACGAGTCATCT
447 AATTTTAAAAAATCCCGAACCGTAAAAAGATTCAAAAATCGTCAAAAATAAAAAACGAGTCATCT
* *
12192337 TGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGC
12192402 ATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
577 ATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12192467 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCATTTAGTCGGTTGGCCTG
642 GCATCCCGTCTCTCTAGCCGACGTAGT----GCCCGCCCGCCTGCTCATTTAGTCGGTTGGCCTA
12192532 G
703 G
**
12192533 GCATACGGAGTTCATTCCCAATCTAAGATCGAATTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
12192598 CTCGGGTATGTGCTGGTGCCGCATTTTTCTTCACCGGG-G-C-ACCATCGCCGGAGAACCTGACC
66 CTCGGGCATGTGCTCATGCCACATTTTTCTTCACCGGGCGTCGACCATCGCCGGAGAACCTGACC
* * * *
12192660 GGCGGCATTGGGGTTCTGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
131 GACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
12192725 GCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACA-CCCCAT
196 GCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCAT
** *
12192789 AAAGAGCATTTTCGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
261 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
12192854 TTTTTTCAAATGGTCACAAAATCTTGTACAG-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
326 TTTTTTCAAATAGTCACAAAATCTTGTAC-GCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
12192918 CAAAAAAAGTACATGGATCATGTTTACAAAGTTTGGG-GCTAAACTCCTTCCAAAAAAATTTTAA
390 CAAAAAAAATACAAGGATCATGTGTACAAAGTTTGGGTGCAAAACTCCTTCCAAAAAAATTTTAA
**
12192982 AAAATCCC-ATACCGTAAAAAGATTCAAAAATCGTCAAAAATAAAAAACGAGTTGTCTTGCCATG
455 AAAATCCCGA-ACCGTAAAAAGATTCAAAAATCGTCAAAAATAAAAAACGAGTCATCTTGCCATG
12193046 AAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
12193111 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCC
584 TGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
12193176 GTCTCTCTAGCCGACGTAGTGCCTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
649 GTCTCTCTAGCCGACGTAGTGCCCGCCCGCCTGCTCATTTAGTCGGTTGGCCTAG
* * * *
12193231 GCATACGGAGTTCATTCCCTATCTAAGATCGGACCAGACTGAGGGTT
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTT
12193278 ATGGTAGCAG
Statistics
Matches: 681, Mismatches: 61, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
698 71 0.10
701 1 0.00
702 224 0.33
703 155 0.23
704 137 0.20
706 1 0.00
707 1 0.00
715 88 0.13
716 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (703 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTCATGCCACATTTTTCTTCACCGGGCGTCGACCATCGCCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCAT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATAGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAATACAAGGATCATGTGTACAAAGTTTGGGTGCAAAACTCCTTCCAAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGATTCAAAAATCGTCAAAAATAAAAAACGAGTCATCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTAGCCGACGTAGTGCCCGCCCGCCTGCTCATTTAGTCGGTTGGCCTAG
Found at i:12194293 original size:26 final size:26
Alignment explanation
Indices: 12194257--12194309 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12194247 GTTGACTCAG
12194257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12194283 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12194309 G
1 G
12194310 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12194450 original size:859 final size:870
Alignment explanation
Indices: 12192748--12195048 Score: 2783
Period size: 859 Copynumber: 2.6 Consensus size: 870
12192738 CCTTATATTG
* * * **
12192748 GCCCCATATCCCTCATCAAACCTCAAGAACTCACA-CCCCATAAAGAGCATTTTCGATTTTACAG
1 GCCCC-TACCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
12192812 GTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
65 GTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
12192877 TTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAGTACATGGATCATGT
130 TTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGT
* * * * * *
12192941 TTACAAAG-TTTGGGGCTAAACTCCTTCCAAAAAAATTTTAAAAAATCCCATACCGTAAAAAGAT
194 CTACCAAGTTTTGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCA-ACCGTAAAAAGTT
* *
12193005 TCAAAAATCGTCAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
258 TCAAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
12193070 ACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
323 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * * *
12193135 AACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTA-G--TG
388 AACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTATGCCCG
*
12193197 -CCTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTATCTAAGATC
453 CCCTGCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCTATCTAAGATC
* * *
12193261 GGACCAGACTGAGGGTTATGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCA
518 AGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCA
* * * * * * * *
12193326 GCTTGCGCATCTCGTCGCTCTGGCCGGCTGAGCGCCAGTATGCTCGTTTCATGGGTTGGCTTAGG
583 GCTTGCGCATCCCGGCCCTCTGGCCGGCTGAGCGCCAGCACGCTCATTTCATGGGTTGACTCAGG
* * *
12193391 CATACGGAGTTAATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACC
648 CATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* *
12193456 AAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGCGCTAGTGTCACGTTTTTCTGTACCGGGGC
713 AAGGGTTGCGACAGCACATGCTGGGCTCGAGCATACGCTAGTGTCAC-TTTTTCTGTACCGGGGC
* ** *
12193521 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGATACGGTGATCAGGGGGCC
777 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGACATTGGGGAT---GT-ATCAGACGACC
12193586 -GGGG-G-G-T-T-TGC-TGC-C-AAAC-C-TA
838 GGGGGTGAGATATGTGCGTGCGCTAAACTCTTA
*
12193608 -CCCCTACCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
1 GCCCCTACCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
12193672 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGAACACTTTTTTCAAATGGTCACAAAATCT
66 TTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * *
12193737 AGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATACCAACCAAAATACAAGGATCACATCT
131 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
12193802 ACCAAGTTTTGGGCCAAAACTTTTTTCGAAAAAA-TTTAAAAAATCCCGAAGCGTAAAAAGTTTC
196 ACCAAGTTTTGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCC-AACCGTAAAAAGTTTC
* *
12193866 AAAAATCGTCAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCATAAGGGAC
260 AAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
12193931 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGCGCCTAAA
325 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * *
12193996 CCCACCTACCATCGTATCGATCCACAGCTTACGCATCCCGTCTCTCTGGCCGGCGTATTGCCCGC
390 CCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-TGCCCGC
* *
12194061 CCATCAGCCCGGCTGTTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAG
454 CC-T--GCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTAAG
* * * * *
12194125 ATCAGACC-GAACTGAGGGTTGCGGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCTATC
515 ATCAGACCAG-ACTGAGGGTTACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATC
* * **
12194189 CCCAGCTTGCGCATCCCGGCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACT
579 CCCAGCTTGCGCATCCCGGCCCTCTGGCCGGCTGAGCGCCAGCACGCTCATTTCATGGGTTGACT
* *
12194254 CAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
644 CAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * * * *
12194319 GACCGATGGTTGC-AGCAGCACATGCTGGGCTCGAGCATATGCTGGTGCTGTA-TTTTTCTTTGC
709 GACCAAGGGTTGCGA-CAGCACATGCTGGGCTCGAGCATACGCTAGTG-T-CACTTTTTCTGTAC
*
12194382 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GACGACATTGGGG-T-T-TC-GACG
771 CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAG-CGACATTGGGGATGTATCAGACG
* ***
12194442 ATCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATA
835 A-C-CGGGGGTG-A-G---AT-ATGTGC-----GTGC--G--CTAAACTC-T-TA
* *
12194497 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTA
1 ---G-CCCCTACCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * * *
12194562 CTGGTTTGCTACTAGTAGCCATTAAGGTTTATGAAATGGGGACAATTTTTTCAAATGGTCACAAA
62 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
12194627 ATTTTGTACAC-TTCACG-TTTTAGCTGAATTTTTTTGTCCACGCCAACAAAAATACAAGGATCA
127 ATCTTGTACACTTTGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * *
12194690 CGTCTACCAAATTTGGGGCCAAAACTCTTTCCAAAAAAATTTTCAAAAATCCCAAACCGTAAAAA
191 CGTCTACCAAGTTTTGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCC-AACCGTAAAAA
* * *
12194755 GTTTCAAAAATCGTGAAAAATAGAACACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
255 GTTTCAAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
12194820 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGATGTG-
320 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* *
12194884 CTGAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTTTCTGGCCGGAGTA-G
385 CT-AAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTATG
* * * ** *
12194948 --TGCCC-GCCCG-CT--T-GTTTCGTCGGTTGGCTTAGGCACATAGAGTTCATTCCCAATCTAA
449 CCCGCCCTGCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCTATCTAA
* ** * * * *
12195006 GATCGGACTGGGCTAAGGGTTACGACAGCAGGATCAGCAGCAC
514 GATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCAC
12195049 GCAACCCTTT
Statistics
Matches: 1236, Mismatches: 147, Indels: 94
0.84 0.10 0.06
Matches are distributed among these distances:
858 26 0.02
859 348 0.28
860 29 0.02
861 1 0.00
862 5 0.00
863 2 0.00
864 2 0.00
865 1 0.00
866 6 0.00
867 316 0.26
868 1 0.00
869 1 0.00
870 1 0.00
872 1 0.00
873 3 0.00
879 3 0.00
882 71 0.06
883 3 0.00
884 1 0.00
885 3 0.00
886 6 0.00
889 2 0.00
890 4 0.00
892 1 0.00
893 79 0.06
894 320 0.26
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (870 bp):
GCCCCTACCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTTGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCAACCGTAAAAAGTTTCA
AAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTATGCCCGCCC
TGCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCTATCTAAGATCAGA
CCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCAGCT
TGCGCATCCCGGCCCTCTGGCCGGCTGAGCGCCAGCACGCTCATTTCATGGGTTGACTCAGGCAT
ACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAG
GGTTGCGACAGCACATGCTGGGCTCGAGCATACGCTAGTGTCACTTTTTCTGTACCGGGGCACCA
TCGTCGGAGCATCGCCGGAGAACCTGACCAGCGACATTGGGGATGTATCAGACGACCGGGGGTGA
GATATGTGCGTGCGCTAAACTCTTA
Found at i:12196229 original size:26 final size:26
Alignment explanation
Indices: 12196173--12196229 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
12196163 CTCCTTCCAA
**
12196173 AAAAATTTTAAAAAATCCTGAACCAT
1 AAAAATTTTAAAAAATCCTGAAAAAT
* *
12196199 AAAAATTTT-GAAAATCGTGAAAAAT
1 AAAAATTTTAAAAAATCCTGAAAAAT
12196224 AGAAAA
1 A-AAAA
12196230 CGAGTCATCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.58, C:0.09, G:0.09, T:0.25
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCCTGAAAAAT
Found at i:12196635 original size:26 final size:26
Alignment explanation
Indices: 12196599--12196651 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12196589 GTTGACTTAG
*
12196599 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12196625 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12196651 G
1 G
12196652 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12197542 original size:26 final size:26
Alignment explanation
Indices: 12197506--12197557 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12197496 TTGACTTAGT
* *
12197506 CATATGGAGTTCATTCCTAGTCTAAG
1 CATATGGAGTTCATTCCCAGTATAAG
12197532 CATATGGAGTTCATTCCCAGTATAAG
1 CATATGGAGTTCATTCCCAGTATAAG
12197558 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CATATGGAGTTCATTCCCAGTATAAG
Found at i:12198009 original size:26 final size:26
Alignment explanation
Indices: 12197978--12198052 Score: 123
Period size: 26 Copynumber: 2.9 Consensus size: 26
12197968 AAACTCCTTA
12197978 CAAAAAGTTTTGAAAATCATGAACTG
1 CAAAAAGTTTTGAAAATCATGAACTG
**
12198004 CAAAAAGTTTTGAAAATCCCGAACTG
1 CAAAAAGTTTTGAAAATCATGAACTG
*
12198030 CAAAAAGTTTTGAAAATCGTGAA
1 CAAAAAGTTTTGAAAATCATGAA
12198053 AAATAGAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.25
Consensus pattern (26 bp):
CAAAAAGTTTTGAAAATCATGAACTG
Found at i:12198902 original size:931 final size:899
Alignment explanation
Indices: 12195726--12202708 Score: 7201
Period size: 906 Copynumber: 7.9 Consensus size: 899
12195716 ACTTAGGCAT
* * * * *
12195726 ATAGAGTTCATTCCCAATCTAAGATCA-GATCGGACCAAGGGTTGCGGCAGCACATGCTCGGCTC
1 ATAGAG-TCATTCCCAGTCTAAGATCAGGCT-GGACCGAGGGTTACGGCAGCACATGCTGGGCTC
* * ** * * * **
12195790 GGGCATGTGCTGGAGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGA-AGAAC
64 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGAGAGAAC
* * * * *
12195854 CTGACCAATGGCATTGGGGTT-CTGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGTG
129 CTGACCGA--GCATTGGGGTTCCAG-CGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGCG
* *
12195918 ATGGGTGCTGGTACTTGACCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACAC
191 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
12195983 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
256 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
12196048 GGACACTTTTTTCAAATGGTTAGAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTGTTTTGTG
321 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * ** *
12196113 CATGCCAACAAAAAATACAAGGATCATGTCTACCAGGTTTGTGGTAAAAACTCCTTCCAAAAAAA
386 CATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * **
12196178 TTTTAAAAAATCCTG--AA--CC-A-T-AAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGAGT
450 TTCT-AAAAAT-TTGAAAATCCCAACTGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
12196235 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
12196300 ATGGTATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCATCCTATCGATCCACGG
578 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
12196365 CTTCCGCATCCTGTCTTTTTGGTCGATG--TAGTGCCCGCCCGCCCGTCAGCCCGCTCGTTTCGT
643 CTTGCGCATCCCGTCTCTCTGG-C-A-GCCTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGT
** * * *
12196428 CGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCA
705 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACA
* ** * * * * * *
12196493 GCAGGATAAACAACACACAGAGGGGGACCCGGTTGATCCCCGGCTTGCACATCCCACCCCTCTGG
770 GCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC-GCCCTCTGG
* * *
12196558 CCGGCTAAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
834 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA--GAGTTCGTT-CCAGTCT
12196623 AAGC
896 AAGC
*** * * *
12196627 ATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAAACCGAGGGTTGCGGCAGCACATACTTGGC
1 ATA--GAG-TCATTCCCAGTCTAAGATCAGG-CTGGACCGAGGGTTACGGCAGCACATGCTGGGC
* * * * * * * *
12196691 TCGGGCATGTGCGGGTGCGGCATTTTTCTTCGCCGGGGCACCATTGTCAGAGCAT-GCTG-GAGA
62 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGAGAGA
* * ** * * *
12196754 ACCTGACCGGCGACAATGGGGTTCTGGCGATCGGGGGGGCTGGGGGGTGGGTGTGCACACTTGAT
127 ACCTGACC-GAG-CATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGT--ATGCGCACA--TGAT
* * * *
12196819 ATGCGATGAGTGCTGGTACTTGGCCCTTATCTTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
186 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* ** * *
12196884 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCGGCCATTAATGTGTCTAA
251 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
12196949 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
316 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
12197014 TTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAGAACTCCTACCCAG
381 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
12197079 AAAATTTTAAAAAATCT-CAAA--CC--GT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
446 AAAATTCT-AAAAATTTGAAAATCCCAACTGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * *
12197138 AGTCGTCTTGGCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATA
510 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* **
12197203 AAAATGGCATTGGCACGTAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCA
575 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
12197268 CGGCTTGCGCATCCCGTCTCTCAGGCTGACGTAGTGCCTGCTCGCCCGTCCGCCCGTTCGTTTCG
640 CGGCTTGCGCATCCCGTCTCTCTGGCAG-CCTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCG
* *
12197333 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGAC
704 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAC
* * * * * *
12197398 AGTAAGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCTTGCCGCCACTCTG
769 AGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC-CTCTG
* * * *
12197463 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGTCATATGGAGTTCATTCCTAGTC
833 GCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA--GAGTTCGTTCC-AGTC
12197528 TAAGC
895 TAAGC
* * *
12197533 ATATGGAGTTCATTCCCAGTATAAGATC-GGACTGGACCGAGGGTTGCTGCAGCACATGCTGGGC
1 ATA--GAG-TCATTCCCAGTCTAAGATCAGG-CTGGACCGAGGGTTACGGCAGCACATGCTGGGC
* **
12197597 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGTC-AGAGA
62 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGAGAGA
* * *** * *
12197661 ACCTAACCGGTGGCATTGGGGTTTTGGCGATCGGGTGGGCCGGGGGGTATGCGCACATGATGTGT
127 ACCTGACC-G-AGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGC
** *
12197726 GATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
12197791 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12197856 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATATTTTTGT
320 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* **
12197921 GCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTACAAAAAGT
385 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-C-CGAA--
**
12197986 TTTGAAAATCATGAACTGCAAAAAGTTTTGAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTG
446 ----AAAAT--T---CT--AAAAA--TTTGAAAATCCC-AACTG-AAAAAGTTTCAAAAATCGTG
* *
12198051 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGTACCATTGTATGA
496 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
12198116 ATTTTCAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
561 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
12198181 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCCTAGTGCCCGCCCGCCCGCCC
626 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CAGCCTAGTGCCCGCCCGCCCGCCC
* * *
12198246 GCCCGTCCGCTCGTTTCGTCGGTTGGCATAGGCATACGAAGTTCATACCCAGTCTAAGATCAGAC
690 GCCCGT----TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * ** * * *
12198311 CAGACCGAGGGTTGTGGCAGCAAGATCGGTAGCACGTAGAGGGGGATCCGATCGATCCCCAGCTT
751 CAGACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * * *
12198376 GCGCATCCTGCCCTTCTGGCCGGTTGAGCCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
816 GCGCATCCCGCCC-TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT-
12198441 CAGAGTTCGTTCTCAGTCTAAGC
879 -AGAGTTCGTTC-CAGTCTAAGC
12198464 ATACGAAGCTCATTCCCAGTCTAAGATCAGGCTGGACCGAGGGTTACGGCAGCACATGCTGGGCT
1 ATA-G-AG-TCATTCCCAGTCTAAGATCAGGCTGGACCGAGGGTTACGGCAGCACATGCTGGGCT
* * *
12198529 CGGCCATGTGCTGGTGCCGTATTTTTCTTCGCCGAGGCACCATCGCCAGAGCATCACCGA-AGAA
63 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGAGAGAA
* * * *
12198593 CCTGACCAGCAGCATTGGGGTTCCAGTGATCGGGGGGGCCGGGGGTTTGTGGGCACATGATGTGC
128 CCTGACC-G-AGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGG-GTATGCGCACATGATGTGC
*
12198658 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
12198723 CCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATAAAATG
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
12198788 GGAAAACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTCCAGTTTTTAGCTGAATTTTTTTAT
320 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
12198853 GCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACGCCTTCCGAAAAAA
385 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
12198917 TTCTAAAAAATCTTG--AA--CC-A-T-AAAAGGTTTC-AAAATCGTGAAAAATAGAAAACGAGT
450 TTCT-AAAAAT-TTGAAAATCCCAACTGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * *
12198974 CGTCTTGCCGTGAAAC-TCTGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAC
513 CGTCTTGCCATGAAACTTC-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
12199038 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCATG
577 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
12199103 ACTTACGCATCCCGTCTCTCT---AG-CT-G-G--CG-CAG--TGCCCACCCGTTTGTTTCGTCG
642 GCTTGCGCATCCCGTCTCTCTGGCAGCCTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCG
* * * * * * * *
12199157 GATGGCTTAGCCATACGGAGTTCATTCTC-GATCTAAGATCAGACCAAACCAAGGGTTGCAATAA
707 GTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCAGACCGAGGGTTGCGACAG
* ** * * *
12199221 CAGGATCGGTAGCACACAGAGGGGGACCCGATTGATCTCCGGCTTGCGCATCCCGTCCCTCTGGC
771 CAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGC
* *
12199286 CGGCTGAGCGCCCGCACGGTTATTTCGTGGGTTGACTTAGGCAT--A---CG-----G----AG-
835 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAGAGTTCGTTCCAGTCTAAGC
** * *
12199336 -T----TCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTACGACAGCACATGCTGGGCTCGG
1 ATAGAGTCATTCCCAGTCTAAGATCAGGCTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
* * * *
12199396 GCATGTGCTGG-GCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGGATTGTCGGAGAACCAT
66 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCG-C-CA-GA--G-C-----ATCA-
12199460 CGTCGGAGGATTGTCGGAGAACCTGACCGACGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGC
119 C--C----GA------GAGAACCTGACCGA-G-CATTGGGGTTCCAGCGATCGGGGGGGCCGGG-
* * *
12199525 GGGCATACGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
169 GGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
12199590 ATCAAACCTCGAGAATTCACAACCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
234 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
12199655 GCAATTAAAGTGTCTGAAACGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAG
299 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * *
12199720 GTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAACATGTTTACCAAGTTTGGGG
364 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
*
12199785 CCAAAACTCCTTCCGAAAAAATT-T-TAAA----AAAATCCCTAACTGTAAAAAGTTTCAAAAAT
429 CCAAAACTCCTTCCGAAAAAATTCTAAAAATTTGAAAATCCC-AACTG-AAAAAGTTTCAAAAAT
* **
12199844 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGATGATTGT
492 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
12199909 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAGCTCACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * ** * * *
12199974 TACCACCCTAACGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGGTGTAGTGCCTGCCTGTCC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-AGCCTAGTGCCCGCCCGCCC
* * * * * * * * *
12200039 GCTCGCCCGCTCATTTCGTCGGGTCGCTTAGGCCTACTGAGTTTATTCCCAGTTTAAGATCAGAC
686 GCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * * * *
12200104 CGGACCGAGGGTTGCGGTAGCAGGATCGACAGGACGCAGAGGGGCACCCGGTCGATCCTCGGCTT
751 CAGACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * * * * * *
12200169 GTGTATCCCGCCCCTCTGGCCGGTTGAGCACCCGTACGCTCA--T--T---TT-A--T-GG-GTT
816 GCGCATCCCG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
12200222 GA---C-TT-C-G-----GC
880 GAGTTCGTTCCAGTCTAAGC
* ** *
12200231 -TA-AG--A-T--C-G-----GAT-----TGGACCGACGGTTGTGGCAGCACATGCTGGGCTCAG
1 ATAGAGTCATTCCCAGTCTAAGATCAGGCTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
* * **
12200278 GCATGTGCTGGTGCCGCATTTTTCTTCGTC-AGGGCACCATCACCGGAGCATCGTCG-GAGAACC
66 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGCCAGAGCATCACCGAGAGAACC
* * * * * * *
12200341 TGATCGACGGCATTGAGGTTTC-GACGATCGGGGGGGCCAGGGGGTGTACGCGCATGATGTGCGA
130 TGACCGA--GCATTGGGGTTCCAG-CGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGCGA
*
12200405 TGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
12200469 CCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
12200534 GACAC-TTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGC
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
12200596 ATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAGACCCCTTTCGAAAAAATT
387 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * ***** * *
12200661 TTAAAAAATCCCGGA--CC-A-T-AAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 CTAAAAATTTGAAAATCCCAACTGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
12200721 TTGCCATGAAACTTCACGTGAGGGCTTAAGGGAGCATTGTATGAATTTACAAGCCGTAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12200786 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * *
12200851 CGCATCCCGCCTCTCTGGGTGACGTAGTGCCCGCCCGCCCGCACG--C--TCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCAG-CCTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTG
** * *** * * * * *
12200912 GCTTAGGTGTACGGAGTTCATTCCCAGTCTAAGATTAGATTGGGCTGAGGCTTGTGGCAGC-AGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAG-
* *
12200976 ATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATACCAC-CCCTCTGGCTGG
775 ATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT-CC-CGCCCTCTGGCCGG
* * * * *
12201040 TTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC---C-AATC
838 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA--GAGTTCGTTCCAGTCTAAGC
* * * *
12201100 A-A-AG--ATT----G-----GA-C---C-GGACCAAGGGTTGCAGTAGCACATGCTGGGCTCGG
1 ATAGAGTCATTCCCAGTCTAAGATCAGGCTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
* * * * *
12201147 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATC-CTGA-AGAACCT
66 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGAGAGAACCT
* *
12201210 GACTGACAGCA-TGGGGTTCC-GACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
131 GACCG--AGCATTGGGGTTCCAG-CGATCGGGGGGGCC-GGGGGGTATGCGCACATGATGTGCGA
*
12201272 TAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * * *
12201337 TCATTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCTGTAGCCATTAAAGTGTCTAAAATGGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
**
12201402 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGC
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * ** * *
12201467 ATGCCAAAAAAAATACAAGGATCACATC-ACCCAAGTTTGTTGCCAAAACTTCTTTCGAAAAAAT
387 ATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
12201531 T-T--TAA----AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
451 TCTAAAAATTTGAAAATCCC-AACTG-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
12201589 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
12201654 TGGCATTGGCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCATGGC
579 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * ** * * * * * *
12201719 TCGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCTTGCCCTCACGCTCATTTCATCAG
644 TTGCGCATCCCGTCTCTCTGGCAG-CCTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGG
* * * * * * *
12201784 TTGGCTT-GGACATACGAAGTTCATTCCTAGTCTAAGATCAAATCGGACTGAGGGTTGCGATAGC
708 TTGGCTTAGG-CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGC
* * * * *
12201848 AGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCC
772 AAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCC
* *
12201913 GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCAT--A--T-G-----G----AG-
836 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAGAGTTCGTTCCAGTCTAAGC
** * * * * *
12201962 -T----TCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGGTAGCACATACTGGGCTCGG
1 ATAGAGTCATTCCCAGTCTAAGATCAGGCTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
* * * * * * *
12202022 GCATGTGCTGGTACCGTATTTTTCTTCATCGGGGCACCATCGCCGGACCATCGCCG-GAGAACCT
66 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGAGAGAACCT
* *
12202086 GACCGACAGCACTGGGGTTCC-GACGAT---------CGGGGGGTGTGCGCACATGATGTGCGAT
131 GACCG--AGCATTGGGGTTCCAG-CGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGCGAT
* * * * * *
12202141 GGGTACGGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCTAACCTCGAGAACTCCCCCCC
193 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
12202206 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
12202271 ACAGTTTTTT-AAATGGTCACAAAATCTTGTACACTAT-GAGTTTTTAGTTG-ATTGTTTTTGTG
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATT-TTTTTGTG
* * *
12202333 CATGCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAAT
386 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * **
12202398 T-T--TAA----AAAATCCCGAACCGTAAAAAAGTTT-TGAAATCGTGAAAAATAGAAAACGAGT
451 TCTAAAAATTTGAAAATCCC-AA-C-TGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * *
12202455 CATCTTGCCGTGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
12202520 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCGCGG
578 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
12202585 CTTGCGCATCTCGTCTTTCTGGTCGTAG--TAATGCCCGTCCGCCCGCCCGTCTGCTCGTTTCGT
643 CTTGCGCATCCCGTCTCTCTGG-C--AGCCTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGT
* * * * *
12202648 CGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCTGATCGGACCGAGTGTTGC
705 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
12202709 AGCAGCACAT
Statistics
Matches: 5219, Mismatches: 641, Indels: 478
0.82 0.10 0.08
Matches are distributed among these distances:
847 1 0.00
848 126 0.02
849 2 0.00
850 3 0.00
851 1 0.00
852 193 0.04
853 79 0.02
854 21 0.00
855 21 0.00
856 98 0.02
857 51 0.01
858 40 0.01
859 4 0.00
860 1 0.00
861 3 0.00
862 2 0.00
863 27 0.01
864 67 0.01
865 4 0.00
866 17 0.00
867 417 0.08
868 286 0.05
869 106 0.02
870 26 0.00
871 274 0.05
872 2 0.00
873 4 0.00
874 8 0.00
875 229 0.04
876 20 0.00
877 18 0.00
878 1 0.00
880 2 0.00
881 2 0.00
882 42 0.01
883 30 0.01
885 2 0.00
886 5 0.00
887 6 0.00
888 243 0.05
889 54 0.01
890 160 0.03
891 161 0.03
892 5 0.00
893 4 0.00
894 10 0.00
895 5 0.00
896 6 0.00
897 3 0.00
898 1 0.00
899 2 0.00
900 2 0.00
901 9 0.00
902 43 0.01
903 470 0.09
904 12 0.00
905 81 0.02
906 826 0.16
907 53 0.01
908 1 0.00
909 1 0.00
910 1 0.00
911 5 0.00
912 2 0.00
913 1 0.00
914 2 0.00
915 1 0.00
916 4 0.00
917 10 0.00
918 2 0.00
919 2 0.00
920 3 0.00
921 1 0.00
922 2 0.00
923 5 0.00
925 1 0.00
927 200 0.04
928 2 0.00
929 2 0.00
930 3 0.00
931 368 0.07
932 208 0.04
933 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
ATAGAGTCATTCCCAGTCTAAGATCAGGCTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGAGAGAACCT
GACCGAGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTCTAA
AAATTTGAAAATCCCAACTGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCAGCCTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGAC
AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGACTTAGGCATAGAGTTCGTTCCAGTCTAAGC
Found at i:12199458 original size:25 final size:25
Alignment explanation
Indices: 12199430--12199482 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
12199420 TCGTCGGGGC
12199430 ACCATCGTCGGAGGATTGTCGGAGA
1 ACCATCGTCGGAGGATTGTCGGAGA
12199455 ACCATCGTCGGAGGATTGTCGGAGA
1 ACCATCGTCGGAGGATTGTCGGAGA
12199480 ACC
1 ACC
12199483 TGACCGACGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.25, C:0.23, G:0.34, T:0.19
Consensus pattern (25 bp):
ACCATCGTCGGAGGATTGTCGGAGA
Found at i:12202530 original size:867 final size:862
Alignment explanation
Indices: 12200251--12202708 Score: 3437
Period size: 867 Copynumber: 2.8 Consensus size: 862
12200241 TTGGACCGAC
* * * *
12200251 GGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACC
1 GGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * * *
12200316 ATCACCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGAGGTTTCGACGATCGGGGGGGCCAG
66 ATCACCGGAGCATCGCCGGAGAACCTGACCGACAGCA-TGGGGTTCCGACGATC-----GG---G
* *
12200381 GGGGTGTACGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTC
122 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTC
* *
12200446 ATCAAACCTTGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTA
187 ATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
12200511 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAG-
252 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGT
*
12200574 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGC
317 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * *
12200639 CAAGACCCCTTTCGAAAAAATTTTAAAAAATCCCGGACCATAAAATGTTTCAAAAATCATGAAAA
382 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* *
12200704 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAGGGCTTAAGGGAGCATTGTATGAATTT
447 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
12200769 ACAAGCCGTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
512 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* ** *
12200834 TATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGGTGACGTAGTGCCCGCCCGCCCGCACGCTC
577 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCACGCTC
** * * * *
12200899 GTTTCGTCGGTTGGCTTAGGTGTACGGAGTTCATTCCCAGTCTAAGATTAGATTGGGCTGAGGCT
642 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGT
* * *
12200964 TGTGGCAGCAGAATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATACCACC
707 TGCGACAGCAGAATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATACCACC
* *
12201029 CCTCTGGCTGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
772 CCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
***
12201094 CCAATCAAAGATTGGACCGGACCAAG
837 CCAATCAAAGATCAAACCGGACCAAG
* *
12201120 GGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACC
1 GGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * *
12201185 ATCACCGGAGCATC-CTGAAGAACCTGACTGACAGCATGGGGTTCCGACGATCGGGGGGCCGGGG
66 ATCACCGGAGCATCGCCGGAGAACCTGACCGACAGCATGGGGTTCCGACGAT--------CGGGG
*
12201249 GGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
123 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTC
* * *
12201314 ATCAAACCTCGAGAACTCACACCTCATTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCTGTA
187 ATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
12201379 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
252 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAG
** * * **
12201444 TTTTTAGCTGAATTTTTTTACGCATGCCAAAAAAAATACAAGGATCACATC-ACCCAAGTTTGTT
316 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGG
*
12201508 GCCAAAACTTCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
380 GCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
*
12201573 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAAT
445 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
12201638 TTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCAC
510 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
12201703 CCTATCGATCCATGGCTCGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCTTGCCCTC
575 CCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-C--GCCCTC
* * * * * *
12201768 ACGCTCATTTCATCAGTTGGCTT-GGACATACGAAGTTCATTCCTAGTCTAAGATCAAATCGGAC
636 ACGCTCGTTTCGTCGGTTGGCTTAGG-CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC
* * ** * *
12201832 TGAGGGTTGCGATAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCAGCTTGCGCA
700 TGAGGGTTGCGACAGCAGAATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCA
* * ** *
12201897 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAG
765 TACCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* *
12201962 TTCATTCCCAGTCTAAGATCAAACCGGACCAAG
830 TTCATTCCCAATCAAAGATCAAACCGGACCAAG
* * * *
12201995 GGTTGCGGTAGCACATACTGGGCTCGGGCATGTGCTGGTACCGTATTTTTCTTCATCGGGGCACC
1 GGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* *
12202060 ATCGCCGGACCATCGCCGGAGAACCTGACCGACAGCACTGGGGTTCCGACGATC-GGGGGGTGTG
66 ATCACCGGAGCATCGCCGGAGAACCTGACCGACAGCA-TGGGGTTCCGACGATCGGGGGGGTGTG
* * *
12202124 CGCACATGATGTGCGATGGGTACGGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCTAAC
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAAC
* * *
12202189 CTCGAGAACTCCCCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
194 CTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
12202254 AAGTGTCTGAAATGGGGACAGTTTTTTAAATGGTCACAAAATCTTGTACACTAT-GAGTTTTTAG
259 AAGTGTCTGAAATGGGGACACTTTTTTAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAG
* * *
12202318 TTG-ATTGTTTTTGTGCATGCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCTAAAA
323 CTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
**
12202382 CTCC-TTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAAGTTT-TGAAATCGTGAAAAATA
387 CTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATA
* * *
12202445 GAAAACGAGTCATCTTGCCGTGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACA
450 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
12202510 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTAT
515 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
** * * * * *
12202575 CGATCCGCGGCTTGCGCATCTCGTCTTTCTGGTCGTA-GTAATGCCCGTCCGCCCGCCCGTC-TG
580 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCG-ACGTAGTG--C--CCGCCCGCCC-TCACG
* * *
12202638 CTCGTTTCGTCGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCTGATCGGACCGAG
639 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAG
*
12202703 TGTTGC
704 GGTTGC
12202709 AGCAGCACAT
Statistics
Matches: 1410, Mismatches: 146, Indels: 68
0.87 0.09 0.04
Matches are distributed among these distances:
866 6 0.00
867 416 0.30
868 287 0.20
869 86 0.06
870 24 0.02
871 284 0.20
872 2 0.00
873 1 0.00
874 2 0.00
875 268 0.19
876 19 0.01
877 15 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (862 bp):
GGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
ATCACCGGAGCATCGCCGGAGAACCTGACCGACAGCATGGGGTTCCGACGATCGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCACGCTCGTTTCGTCG
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGC
AGAATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATACCACCCCTCTGGCC
GGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCAAA
GATCAAACCGGACCAAG
Found at i:12203306 original size:718 final size:707
Alignment explanation
Indices: 12201920--12203406 Score: 2147
Period size: 718 Copynumber: 2.1 Consensus size: 707
12201910 GCCGGCTGAG
* * *
12201920 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAA
1 CGCCCGC-TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
* * ** * *
12201985 CCGGACCAAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGCTGGTACCGTATTTTTCTTCA
65 CCGGACCAAGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGTACCCCAATTTCCTTCA
*
12202050 TCGGGGCACCATCGCCGGACCATCGCCGGAGAACCTGACCGACAGCACTGGGGTTCCGACGATCG
130 TCAGGGCACCATCGCCGGACCATCGCCGGAGAACCTGACCGACAGCACTGGGGTTCCGACGATCG
* *
12202115 GGGGGTGTGCGCACATGATGTGCGATGGGTACGGGTACTTGGCCCTTATATTGGCCCTCTATCCC
195 GGGGGTGTGCGCACATCATGTGCGATGGGTACGGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
12202180 TCATCTAACCTCGAGAACTCCCCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
260 TCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
12202245 TAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTAAATGGTCACAAAATCTTGTACACTATGA
325 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAATGGTCACAAAATCTTGTACACTATGA
* * * * *
12202310 GTTTTTAGTTGATTGTTTTTGTGCATGCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGG
390 GTTTTTAGCTGATTGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCAACCAAGTTTAGG
* * * *
12202375 GCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAAGTTTTGAAATCGTGAA
455 GCTAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAAGTTTGGAAATCGTGAA
* * *
12202440 AAATAGAAAACGAGTCATCTTGCCGTGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAAT
520 AAATAGAAAACGAGTCATATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
12202505 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCAC
585 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* ** * * * *
12202570 CCTATCGATCCGCGGCTTGCGCATCTCGTCTTTCTGGTC-GTAGTAATGCCCGTCCGCC
650 CCTATCAATCAACGGCTTGCGCATCCCGTCTCTCTGGCCTG-AGTAATGCCCGCCCGCC
* **
12202628 CGCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCTGA
1 CGCCCG-CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
* * * * * *
12202693 TCGGACCGAGTGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCCCAATTTCCTTCA
65 CCGGACCAAGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGTACCCCAATTTCCTTCA
* * * * *
12202758 TCAGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG
130 TCAGGGCACCATCGCCGGACCATCGCCGGAGAACCTGACCGACAGCACTGGGGTTCCGACGATC-
* * *
12202823 GAGGGGCCAGGGGGTGTGCGCACATCATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
194 -----G---GGGGGTGTGCGCACATCATGTGCGATGGGTACGGGTACTTGGCCCTTATATTGGCC
* *
12202888 CCCTATCCTTCATCAAACCTTGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTT
251 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTT
*
12202953 TGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
316 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-AAATGGTCACAAAATCTTG
*
12203018 TACACT-TCGAGTTTTTAGCTGAATT-TTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCA
380 TACACTAT-GAGTTTTTAGCTG-ATTGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCA
* * *
12203081 ACCAAGTTTAGGGCTAAAAATCCTTCCGAAAAAATTTTGAAAAATCTCAAACCG-CAAAAAGTTT
443 ACCAAGTTTAGGGCTAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAAGTTT
12203145 GGAAAATCGTGAAAAATAGAAAACGAGTCATATTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
508 GG-AAATCGTGAAAAATAGAAAACGAGTCATATTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
12203210 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
572 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * *
12203275 ACCCACCTACCACGCTATCAATCAACGGCTTGCGCATCCCGTCTCTCTGGCCTGCGTAGTGCCCG
637 ACCCACCTACCACCCTATCAATCAACGGCTTGCGCATCCCGTCTCTCTGGCCTGAGTAATGCCCG
12203340 CCCGCC
702 CCCGCC
* * * *
12203346 CGCCCGCCCT-CTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTCAGAT
1 CGCCCG--CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
12203407 TGGACCAAAC
Statistics
Matches: 691, Mismatches: 72, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
708 168 0.24
709 1 0.00
714 1 0.00
717 164 0.24
718 351 0.51
719 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (707 bp):
CGCCCGCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAC
CGGACCAAGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGTACCCCAATTTCCTTCAT
CAGGGCACCATCGCCGGACCATCGCCGGAGAACCTGACCGACAGCACTGGGGTTCCGACGATCGG
GGGGTGTGCGCACATCATGTGCGATGGGTACGGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAATGGTCACAAAATCTTGTACACTATGAG
TTTTTAGCTGATTGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCAACCAAGTTTAGGG
CTAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAAGTTTGGAAATCGTGAAA
AATAGAAAACGAGTCATATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCAATCAACGGCTTGCGCATCCCGTCTCTCTGGCCTGAGTAATGCCCGCCCGCC
Found at i:12204571 original size:871 final size:870
Alignment explanation
Indices: 12202649--12213027 Score: 10959
Period size: 871 Copynumber: 11.9 Consensus size: 870
12202639 TCGTTTCGTC
* * * * * * *
12202649 GGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCTGATC-GGACCGAGTGTTGCAGCA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGG-CCGAGGGTTACGGCA
* * * * * * *
12202713 GCACATGCTGGGCTCGGGCATGTGTTGGTGCCCCAATTTCCTTCATCAGGGCACCATCGCCGGAG
65 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAG
* * *
12202778 CATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGAGGGGCCAGGGGGTGTGCG
129 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCG
* * *
12202843 CACATCATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCT
193 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
12202908 TGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
258 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
12202973 GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
323 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * *
12203038 GAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCAACCAAGTTTAGGGCTAAAAATC
388 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
12203103 CTTCCGAAAAAATTTTGAAAAAT-CTCAAACCGCAAAAAGTTTGGAAAATCGTGAAAAATAGAAA
453 CTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* *
12203167 ACGAGTCATATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
517 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
12203232 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCAAT
582 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
12203297 CAACGGCTTGCGCATCCCGTCTCTCTGGCCTG-CGTAGTGCCCGCCCGCCCGCCCGCCCTCTTGT
647 CCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCGCCCG--CTC--GT
* * * *
12203361 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTCAGATTGGACCAAACTGAGGGTTG
707 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTG
* * * * * *
12203426 -CAGCAACAGGATCGCCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCTCATCCCGCCC
772 TGA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGACTTGCGCATCCCGCCC
* * * * * *
12203490 CTCTGGCCGGTTGAGCACCCACAAGCTCATTTTG-TG
835 CTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTCGATG
* ** * * **
12203526 GGTTGACTTAGGCATACAGAGTTCATTTACAGTCTAAGATCGGACCAGACCGAGGGTAACGATAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTACGGCAG
* * * * * *
12203591 CACATGCTAGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACAATGGCCGGAGC
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGC
* * * *
12203656 ATCGTCGGAGAACCTAACCAACGGCATTGGGGTTCCGACGATCGGGGGTGTCGGGGGGTGTGCGC
130 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGCGC
*
12203721 ACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
194 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
12203786 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAG
259 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
12203851 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
324 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
12203916 -ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACC
389 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* ** * *
12203980 TTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAAT
454 TTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
* * * *
12204045 GAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTAGAAGCCAT
519 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * * *
12204110 AAAAATGGCATTGGCATGCAGAAATATGATGATGTACATAAACCCACTTACCACCCTATCGATAC
584 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
12204175 ACGGCTT-CGAATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCTGCCTGCTCATTTTGTCG
649 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* **
12204239 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGGGTTGTGACAGC
714 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGTGACAGC
* * * *
12204304 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCAATCCCTGACTTGTGCATCCCACCCCTCTGGCC
779 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC-GACTTGCGCATCCCGCCCCTCTGGCC
* ** * *
12204369 GACTGAGCGCCTACACACTCGTTCGACG
843 GGCTGAGCGCCCGCACGCTCGTTCGATG
* * * * * *
12204397 AGTTGACTTAGGCATATGGAGTTCATTCCCATTCTAAGATTGGA-CTGGCTCGAGGGTTATGGCA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGC-CGAGGGTTACGGCA
* * * * * *
12204461 GCACATGCCGGGCTTGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGTACCATTGTCGAAG
65 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG-AG
* ** * * * *
12204526 CATAGTTGGAGAACCTGACCGGCGGCGTTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGC
129 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
*
12204591 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTC
194 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
12204656 GAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
259 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
12204721 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG
324 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
12204786 AATTTTTTTGTGCGTGCCAACAAAAATACAAGGAACACGTCTACCAAGTTTAGGGG-CAAAACTC
389 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTC
* * * * * ** *
12204850 CTCCCGAAAAAATTTGAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTGAAAAATCGAAAA
453 CTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
12204915 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
518 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
12204980 T-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
583 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * ***
12205044 CAC-GCATTGCACATCACGTCTCTCTGG-CAACGTAGTTCCCG--C-TTAG--CGCTCGTTTCGT
648 CACGGC-TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * **
12205102 --ATT-GCTTAGAC-TGACGGA-TTC-TTCCCAGTCTAAG-TCGGACCG-AC-CAACGTT-TG-C
712 CGGTTGGCTTAGGCAT-ACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGTGAC
* * * * * * *
12205156 AGGGACAAGATCAGAAGCA-G-AGAGGGGGA-TCGATCGATCCTTG-CTTGCAC-TCCGCGCCCC
776 A--G-CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCC-CGCCCC
** * * * * ** * *
12205216 GATGGCGCAGCTGACCACGTCGGTCGTGGTCTGATCTTAGCATG
836 TCTGGC-CGGCTGA--GCGCCCG-CACGCTC-G---TTCG-ATG
* * * * ** * * *
12205260 GTTCATCCGAAC-TAAGCATA-TG-GCTCA-T-CCAAAC-AAGATCGGACCAGACGGAGGGTTAT
1 GGT--T--G-ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTAC
* * * * *
12205319 GGCAG-AAAT-ATGGGGTCGGGCAT-TGCT-G-GCCGCA----TGTTCGTCAGGGCACCATCGTC
61 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC
*** ** * * *
12205375 GAGCAT-GATAG-GAA-CTG-CCG--GTATATTTGGGTTCTGACGATCGGGGGGGTCGGGGGGTG
126 GAGCATCGCCGGAGAACCTGACCGACG-GCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTG
12205434 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
189 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
12205499 ACCTTGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCAT
254 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
12205564 TAAAGTGTTTGGAAA-GGGGACGCTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTT
319 TAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
12205628 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTTCCAAGTTGGGGGCCAA
383 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
12205693 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAGAGTTTTGAAAATCATGAAAAATA
448 AACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATA
12205758 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
513 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *** *
12205823 ATCCATAAAAATGGCTTTGGCACATAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTAT
578 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
12205888 CGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCTTGCC-CATCCGCCTGC
643 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC---CCGC--CCGCCCGC
* * * * * * **
12205952 TCGTTTTGTCGGTTGGCTTA-GCATACGAAGTTCATTCTCAGTCTAAGATTTGTCCAAACCAAGG
703 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGG
** ** * ** * *
12206016 GTTACGGTAGCAGGATCGACAGCACATAGAGGGGGACCCGGCCGATCCGCGACTTGCGCATCTCG
768 GTTGTGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCG
* *
12206081 CCTCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCG-TG
832 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTCGATG
* * *
12206120 GGCTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C--AG-
* ** * * *
12206185 TCAGACCCAACCGAGGGTTGCGATAGCAAATGCTGGGCTCGGGTATGTGCTGGTGCTGCATTTTT
49 ---G------CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* ** * * * *** * *
12206250 GTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCATAATTGGGGTTCTGGC
105 CTTCGTCGGGGCACCATCGTC-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * * * *
12206315 GATCGGGGGGGCAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTATTTGGCCCTTATATT
169 GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
12206380 GGCCCCGTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
234 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * * *
12206445 GATTTGTTGCCAGTAGCCATTAAAGTGTTTGGAATGGGGACATTTTTTTCAAATGGTCACAAAAT
299 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
12206510 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
364 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * * *
12206575 TTTCCAAGTTAGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CTCAAACCGCAAAGAGT
429 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGT
* *
12206639 TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
493 TTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
12206704 GACCATTGTATAAATTTACAAGCCATAAAAATGGCATTTGGCATGCAGAAATATGAAGATGTGCC
558 GACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTGGCATGCAGAAATATGAAGATGTGCC
*
12206769 TAAACCCACCTACCACCCTATC-ATCCACGGCTTGAGCATCCCGTCTCTCTGGCCGACGTAGTGC
622 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
*
12206833 CCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
687 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * ** * * ** * *
12206898 TCAGACC-AGACCGAGGGTTGCAACGGTAGGATCGATAGCACACAGAGGAGGACCCGACCGATCG
752 TTGGACCGA-ACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC-
* * * * *
12206962 CCGGCTTGCACATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCATTTCG-TG
815 CCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTCGATG
* * * *
12207018 GGTTGACTTAGGCATACAGACTTTATTCCCAGTCTAACCATACAGAGTTCATTCTCATTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GAT-C-G-G---A----C---C--AG-
** * * *
12207083 TCAAACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGTCATGTGCTGGTGCCACATTTTT
49 --------G-CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
** * * *
12207148 CTTCACCGGGGCACCATTGTCGGAGCGTCGCCGGAGAACCTGACCGACGGCATTGGGGATCCGAC
105 CTTCGTCGGGGCACCATCGTC-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
** * *
12207213 GATCAGGACGGTCGGGGGG-GTGGGGCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
169 GATC-GGGGGGCCGGGGGGTGT-GCG-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
12207277 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
231 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
12207342 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAA
296 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
12207407 AATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAAATACAAGGATGA
361 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
12207472 CGTCTACCAAGTTTGGGGCCAAAACT-CTATCCAAAAAAATTTTAAGAAAT-CTCGAACC-CTAA
426 CGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCT-GAACCGC-AA
12207534 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
488 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
12207599 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAACATG
553 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * *
12207664 TGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGTGCATCCCATCTCTCTGGTCGACGTA
618 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * * * *
12207729 GTGCCTGTCCTTCCACCCGTCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
683 GTGCCCG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * *
12207794 GTCTAAGATTGGATCGGA-TCGAGGGTT-ACAGCAGTAGGATCGACAGCACGCAGAGGGGGACCC
744 GTCTAAGATTGGACCGAACT-GAGGGTTGTGA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * * * *
12207857 -AGTCGATCCCCAGCTTACGTATCCCGCCCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCAT
807 GA-CCGATCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTC--
12207921 GGGTTAACTTAG
867 --G---A--T-G
* * *
12207933 GCATATGAAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGACCAGAC
1 G-GT-TG-A---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGC
* * * ** * *
12207998 TGAGGGTTGCAGCAGCACATGCTCAGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCAGGG
51 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
12208063 CACCATCGTCAGAGTATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG
116 CACCATCGTC-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG
*
12208128 CCGGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
179 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
12208193 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGC
244 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
12208258 CAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACA-T
309 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
12208322 CTCGAGTTTTTAGCTGAAATTTTTTT-TGCATGCCAACATAAATACAAGGATCACGTCTACCAAG
374 -TCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* ** * **
12208386 TTTAGGGCCAAAAAACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
437 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAAT
* * * * *
12208451 CAT-AGAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCATGTGAAAGCTTAAGGGACCATTG
502 CGTGA-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
12208515 TATGAATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACGCC
566 TATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAAC-CC
* * * *
12208579 ACGCTACCACCCCTAATCGATACAAGGCTTGCGCATCTGCGTTTCTCT-GCCGACAGTAGTGCTC
629 AC-CTACCA-CCCT-ATCGATCCACGGCTTGCGCATC-CCGTCTCTCTGGCCGAC-GTAGTGC-C
* * ** *
12208643 GCGCTGCCGTCC-CCCGCTCCTTTCGTCGGTTGTATTA-GCATACGAAGTTCATTCCCAGTCTAA
688 -CGC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * ** * * * * *
12208706 GATTAGTCCAGATC-GAGGGTTAT-AGTAGTAGGATCGGCAGCAAACAAAAGGGGAACCAATCGA
750 GATTGGACC-GAACTGAGGGTTGTGA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * *
12208769 TCCCCAGCTTGCGCATTGCCGCGCCAC-CTAGCGCGACTGAGCACTTCCGCTACGCTGCGTTTCC
813 TCCCGA-CTTGCGCA-T-CC-CGCCCCTCTGGC-CGGCTGAGCGC--CCGC-ACGCT-CG-TT-C
*
12208833 CATG
867 GATG
12208837 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAAAAAAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC------AG-
* * ***
12208902 TCAGATCAGATAGAGGGTTACGGCAGCACGTGCTGAAATCGGGCATGTG-TCGGTGCCGCATTTT
49 ---G--C----CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTT
* * * *
12208966 TCTACATCGGGGCACCA---TC--GCA-----GGAGAACCTGACC-AGCGGTATTGGGATTCCGA
104 TCTTCGTCGGGGCACCATCGTCGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGA
* * * * *
12209020 TGATCGGGGCAGCCGGGGGGGTGTGCGCACATGATGTGCGATGCGTGGTGATACTTGGCCCTTAT
168 CGATCGGGG-GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
12209085 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTT
231 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* **
12209150 ACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATTTGGACACTTTTTTCAAATGGTCACAA
296 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* ** *
12209215 AATCTTGTACGCTTCGAGTTTTTATTTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCA
361 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * *
12209280 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-CAAAAAGTTTAAAAAATCCCG-ATCGTAAAAA
426 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAA
** * *
12209343 GTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
491 GTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
12209408 GGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
556 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * * * *
12209473 CTAAACCCACCTACCACCCTATCAATCCATGGCTTGCACATCCCGTCTCCCTGGCTGACGTAGTG
621 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* *** * * * * *
12209538 CCCACCCG--C-TAAGATCAG--AC--C---AGAC-T--G-AT---G-G-T--TTCGGCAG-C-A
686 CCCGCCCGCCCGCCCGCTC-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC-CCAGTCTA
* * * * * * * * ** * * * *
12209580 AGA-TCGACAGCATGCTGAGGG--G-GTC--C-CGATC-G-ATC-CCCGGCTTGTGCATCCTGCC
749 AGATTGGACCG-A-ACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAG-AGGGGGA-CCCG-A
** * * * * ** * * **** * **
12209635 CCTTTGGCCGAC-TGAGC-GCCCGCACGCTCGTTTCGTGTGTTGA-CTTAGGCAGGCAGAGTTC-
809 CCGAT-CCCGACTTGCGCATCCCGC-CCCTC-TGGC-CG-GCTGAGCGCCCGCACGC-TCGTTCG
*
12209696 ATT
868 ATG
**** * * * ** * * *
12209699 CCCAGTC-TAAGCATACGAAGTTCATTCTTAGTCTAAGATCGGACCAGACCGAGGGTTACAGTAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTACGGCAG
* *
12209763 CACATGCCGGGCTCGGGCATGTGCTGGTGCCCCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGC
* * * *
12209828 ATCGCCGGAGAACTTGACCGATGGCATTGGGGTTTCGACGATCGGGGGGTCGGGGGGGGTGTGCG
130 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-C-CGGGGGGTGTGCG
*
12209893 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
193 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * ** *
12209958 CGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCCAGTAGTTATTAAT
258 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
12210023 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTACATTTCGAGTTTTTATCT
323 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
12210088 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAACTC
388 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
*
12210153 CTTCC-AAAAAATTTTAAAAAAT-CTCGAACCGCAAAGAGTTTTGAAAATCGTGAAAAATAGAAA
453 CTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* *
12210216 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC
517 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
12210281 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGAT
582 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * ** *
12210346 CCACGGCTTGCGTATCTCGTCTCTCAGGCCGACGTAGTGCCCTCCTGCCCGCCCGTTCGCTCCTT
647 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTT
* *
12210411 TCGTCGGTTGGCTTA-GCATACGAAGTTCATTCCCAGTCTAAGATTGGTCC-AGACTGAGGGTT-
708 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGA-ACTGAGGGTTG
* * * * *** * * * **
12210473 TCAACAGTAGGATCGGCAGCATGTAGAGGGGGACCCGGTTGATCCCCTG-CATACGCGTCCTACC
772 T-GACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCC-GACTTGCGCATCCCGCC
* * *
12210537 CCTCTGGCCGGCTGAGCGCCTGCACGTTCGTTTC-ATA
834 CCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTCGATG
* * * *
12210574 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTACGGTAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTACGGCAG
* ** *
12210639 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCA---T----C-
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCA
* * *
12210696 -C-CCGGAGAACCTGACTGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCA
131 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCA
* * **
12210759 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA-ACCTCATCAAACCTTA
195 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
12210823 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAATGT
260 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * * *
12210888 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTACACTTCGATTTTTTATCTAA
325 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
12210953 ATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
390 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * * *
12211018 TCC-AAAAAAGTTTAAAAAAT-CTCGAATCGTAAAAAGTTTTTAAAATCATGAAAAATAAAAAAT
455 TCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
* * * *
12211081 GAGTTGTCTTGGCATTAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCAT
519 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * * * *
12211146 AAAAATGGCATTGGCATGTATAAATATGAAGATGTGCTTAAACCCACCTA-CTCCCTATCAATAC
584 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
** * * *
12211210 ACGGCTTGCGCATCCCGT-TCCTCTGGCCGGTGTAGCGCCCGCCCGTCCGCCCGCTCCTTTCGTC
649 ACGGCTTGCGCATCCCGTCT-CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * * * *
12211274 GATTCGTTTAGGGATACGAAGTTCATTCCCAGTCTAAGATTGGA-CTAGACCGAGGGTTGTGGCA
713 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGA-ACTGAGGGTTGTGACA
* * * * * * * * * *
12211338 GTAGGACCTGCAGCATGTAAAGGGGGAACCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGG
777 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCGCCCCTCTGG
* *
12211403 ACGGCTGAGCGCCCACACGCTCGTTTC-ATG
841 CCGGCTGAGCGCCCGCACGCTCG-TTCGATG
* *
12211433 GGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAGATCGGACC-GGATCGAGGGTTACGGCA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGG-CCGAGGGTTACGGCA
* * *
12211497 GCACATACTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTC-GGGCACCATCGCCCGAG
65 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGAG
* * * *
12211561 CATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGAGAGCCTGGGGGGTGTAC
129 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCC-GGGGGGTGTGC
12211626 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
192 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
12211691 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAA
257 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
12211756 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTTGAGTTTTTAGC
322 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
12211821 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTCATCTACCAAGTTTAGGGG-CAAAAA
387 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAAC
* * * * *
12211885 TTCTTCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAA
451 TCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
*
12211950 AACGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
516 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** * *
12212015 CATAAAAATGGTGTTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCAA
581 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* ** * *
12212080 TCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTTGCCCGTCCGCTCGTTTCA
646 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
* ** * *
12212145 TCGGTTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATAT-GACCGGGCCGAGGGTTGCG
711 TCGG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACCGAACTGAGGGTTGTG
* * * * *
12212209 ATAGCAGGATCGGTAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCAG-CCCTT
774 ACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGACTTGCGCATCCCGCCCCTC
* * *
12212273 TGGCTGGCTGAGCGCCCGTACGCTCATTTCG-TG
838 TGGCCGGCTGAGCGCCCGCACGCTC-GTTCGATG
* * * * * * **
12212306 TGTTGGCTTAGGCAGACGAAGTTCATTCCCAGTCTAAGATCAGACC-GGATCGAGGGTTGTGGCA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGG-CCGAGGGTTACGGCA
* * * *
12212370 GCACAAGCTAGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGCCGGGGCACCA---TC--G-
65 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGC
* *
12212429 -T---CGGAGAACCTGACCGGCGGCA------TT------A--GGGGGGCC--GGGGTGTGTGCA
130 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCA
* *
12212474 CAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
195 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
12212539 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
260 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
12212604 GTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
325 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* ** * * *
12212669 TTTTTTTTGTGCATGTTAAGAAAAATACAAGGATCACGTCTACCAAGTTTAGGGACAAAACTCCT
390 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* *
12212734 T-CTAAAAAGATTTTAAAAAATCCTGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
455 TCCGAAAAA-ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
*
12212798 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
519 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
12212863 AAAAATGGCATTGGCATGTAGAAATATGAA-ATGTGCCTAAACCCACCTACCACCCTATCGATCC
584 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * ** * ** ** *
12212927 ACAGCTTACGCATCATGTCTCTTTCACCGATTTAGTGGCCGCCCGCCCGCCTATCCGCTCGTTTC
649 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-C---CCGCTCGTTTC
* * *
12212992 ATAGGTTGGCTTAGGCATACGGAGTTTATTCCCAGT
710 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
12213028 ATAGGATCGA
Statistics
Matches: 8064, Mismatches: 1089, Indels: 728
0.82 0.11 0.07
Matches are distributed among these distances:
835 57 0.01
836 1 0.00
838 2 0.00
839 1 0.00
841 3 0.00
844 80 0.01
845 396 0.05
846 308 0.04
847 234 0.03
848 398 0.05
849 91 0.01
850 18 0.00
851 10 0.00
852 5 0.00
853 23 0.00
854 19 0.00
855 19 0.00
856 19 0.00
857 19 0.00
858 64 0.01
859 241 0.03
860 34 0.00
861 45 0.01
862 96 0.01
863 402 0.05
864 69 0.01
865 72 0.01
866 24 0.00
867 22 0.00
868 37 0.00
869 67 0.01
870 369 0.05
871 655 0.08
872 167 0.02
873 201 0.02
874 106 0.01
875 62 0.01
876 358 0.04
877 361 0.04
878 10 0.00
879 2 0.00
883 2 0.00
884 1 0.00
885 1 0.00
886 1 0.00
887 11 0.00
888 4 0.00
889 38 0.00
890 6 0.00
891 3 0.00
892 10 0.00
893 1 0.00
894 5 0.00
896 22 0.00
897 35 0.00
898 297 0.04
899 93 0.01
900 420 0.05
901 443 0.05
902 72 0.01
903 534 0.07
904 342 0.04
905 257 0.03
906 87 0.01
907 46 0.01
908 27 0.00
909 17 0.00
910 1 0.00
911 5 0.00
912 7 0.00
913 5 0.00
914 5 0.00
915 59 0.01
916 2 0.00
917 2 0.00
918 1 0.00
919 1 0.00
921 1 0.00
922 2 0.00
923 1 0.00
925 2 0.00
926 1 0.00
927 1 0.00
928 1 0.00
929 2 0.00
930 23 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTACGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCA
TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
CCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGTGACAGCAG
GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
TGAGCGCCCGCACGCTCGTTCGATG
Found at i:12207071 original size:26 final size:26
Alignment explanation
Indices: 12207030--12207080 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
12207020 TTGACTTAGG
*
12207030 CATACAGACTTTATTCCCAGTCTAAC
1 CATACAGACTTCATTCCCAGTCTAAC
* * *
12207056 CATACAGAGTTCATTCTCATTCTAA
1 CATACAGACTTCATTCCCAGTCTAA
12207081 GATCAAACCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.33
Consensus pattern (26 bp):
CATACAGACTTCATTCCCAGTCTAAC
Found at i:12207963 original size:26 final size:26
Alignment explanation
Indices: 12207933--12207985 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12207923 GTTAACTTAG
* *
12207933 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
*
12207959 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
12207985 G
1 G
12207986 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:12208383 original size:903 final size:898
Alignment explanation
Indices: 12204408--12209540 Score: 6101
Period size: 903 Copynumber: 5.8 Consensus size: 898
12204398 GTTGACTTAG
* * ** * * * *
12204408 GCATATGGAGTTCATTCCCATTCTAAGATTGGA-CTGGCTCGAGGGTTATGGCAGCACATGCCGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACT-GAGGGTTACGGCAGCACATGCTGG
* * * * * * *
12204472 GCTTGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGTACCATTGTCGAAGCAT-AGTTGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCG-AGCATCA--CGGA
* * * *
12204536 GAACCTGACCGGCGGCGTTAGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
127 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
12204600 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12204665 CACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12204730 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12204795 GTGCGTGCCAACAAAAATACAAGGAACACGTCTACCAAGTTTAGGGG-CAAAACTCCTCCCGAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAA
* * * * *
12204859 AAATTTGAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTGAAAAATCGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
12204924 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
12204988 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCATT
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TT
* * * * *
12205052 GCACATCACGTCTCTCTGG-CAACGTAGTTCCCGCTT--A---G-CGCTCGTTTCGT--ATT-GC
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTTCCACCCGCCGCTCGTTTCGTCGGTTGGC
* ** * * * * * * * *
12205107 TTAGAC-TGACGGA-TTC-TTCCCAGTCTAAG-TCGGA-CCGACCAACGTTTGCAG-GGACAAGA
710 TTAGGCAT-ACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTACAGCAG-TAGGA
* * * ** * **
12205166 TCAGA-AG--CAGAGAGGGGGATCGA-TCGAT-CCTTGCTTGCAC-TCCGCGCCCCGATGG-CG-
773 TC-GACAGCACACAGAGGGGGACCCAGTCGATCCCCAGCTTGCGCATCC-CGCCCCTCTGGCCGA
* * * *
12205223 C--AGCTG-AC-CACG-TCG-GTCGT-GGTCTGATCTTA-GC--ATG--GTTCA-TCCGA-ACTA
836 CTGAGC-GCCCGCACGCTCGTTTCGTGGGT-TGA-CTTAGGCATATGAAGTTCATTCCCAGTCTA
12205274 A
898 A
* * * * * * * *
12205275 GCATA-TG-GCTCA-T-CCAAAC-AAGATCGGACCAGACGGAGGGTTATGGCAG-AAAT-ATGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTGGG
* * * * **
12205333 GTCGGGCAT-TGCT-G-GCCGCA-TGTTCGTCA---GGGCACCATCGTCGAGCATGATAG-GAA-
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCACGGAGAAC
** * * *
12205389 CTG-CCG--GTATATTTGGGTTCTGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
131 CTGACCGACG-GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
12205451 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
12205516 GCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTTTGGAAA-G
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATG
* *
12205580 GGGACGCTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12205645 GCATGCCAAAAAAAATACAAGGATCACGTCTTCCAAGTTGGGGGCCAAAACTCCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* **
12205710 TTTTAAAAAATCCCGAACCGCAAAGAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
12205775 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCTT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** *
12205840 TGGCACATAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
12205905 ATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCTTGCCCATCCGCCTGCTCGTTTTGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTT--CCACCCGCC-GCTCGTTTCGTCGGTTGGCT
* * * * * * * *
12205970 TA-GCATACGAAGTTCATTCTCAGTCTAAGATTTG-TCCAAACCAAGGGTTACGGTAGCAGGATC
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAT-CAGACCGAGGGTTACAGCAGTAGGATC
* * * * * * *
12206033 GACAGCACATAGAGGGGGACCCGGCCGATCCGC-GACTTGCGCATCTCGCCTCTCTGGCCGGCTG
775 GACAGCACACAGAGGGGGACCCAGTCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
12206097 AGCGCCCACACGCTCGTTTCGTGGGCTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAA
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAA
* * * ** *
12206157 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCA-ACCGAGGGTTGCGATAGCAAATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGA-CCAGACTGAGGGTTACGGCAGCACATGCTGG
* * * * *
12206221 GCTCGGGTATGTGCTGGTGCTGCATTTTTGTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATC-ACGGAG
* * *** * * * *
12206286 AACCTGACTGGCATAATTGGGGTTCTGGCGATCGGGGGGG-CAGGGGGTGTGTGCACATGATGTG
128 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
12206350 CGATGGGTGCTAGTATTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12206415 ACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGTTGCCAGTAGCCATTAAAGTGTTTGGAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12206480 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
12206545 TGCATGCCAAAAAAAATACAAGGATCACGTTTTCCAAGTTAGGGGCCAAAACTCCTTCTGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
12206610 ATTTTAAAAAATCTCAAACCGCAAAGAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12206675 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12206740 TTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-ATCCACGGCTTGA
583 -TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
12206804 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC--CCGCCCGCCCGCTCATTTCGTCGGTTGGCT
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTTCCACCCG-CCGCTCGTTTCGTCGGTTGGCT
* * * * *
12206867 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACGGTAGGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTACAGCAGTAGGATCG
* * * * * * * *
12206932 ATAGCACACAGAGGAGGACCC-GACCGATCGCCGGCTTGCACATCCCGCCCCTCTGGTCGGCTGA
776 ACAGCACACAGAGGGGGACCCAG-TCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* * * * *
12206996 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA-CAGACTTTATTCCCAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGA-AGTTCATTCCCAGTCTAA
* * * * * * **
12207055 CCATACAGAGTTCATTCTCATTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
12207120 CTTGGTCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGTCGGAGCGTCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATC-ACGGAGA
* * ** * *
12207185 ACCTGACCGACGGCATTGGGGATCCGACGATCAGGACGGTCGGGGGG-GTGGGGCCACATGATGT
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT-GCG-CACATGATGT
*
12207249 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12207314 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12207379 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
12207444 ATGCATGCCAATAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAACT-CTATCCAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAA
* * ** *
12207508 AAATTTTAAGAAATCTCGAACC-CTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
451 AAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
12207572 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12207637 GCATTGGCATGCAGAAATAAGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
12207702 GTGCATCCCATCTCTCTGGTCGACGTAGTGCCTGTCCTTCCACCCGTCCACTCGTTTCATCGGTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--CTTCCACCCG-CCGCTCGTTTCGTCGGTT
* * *
12207767 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACAGCAGTAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTACAGCAGTAGG
* * *
12207832 ATCGACAGCACGCAGAGGGGGACCCAGTCGATCCCCAGCTTACGTATCCCGCCCCTCTGGCCGAC
772 ATCGACAGCACACAGAGGGGGACCCAGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * *
12207897 TGAGTGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATATGAAGTTCATTCCCAGTCTAA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAA
* * * * * **
12207959 GCATACGGAGTTAATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCACATGCTCAG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTGGG
* * * *
12208024 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCAGGGCACCATCGTCAGAGTATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATCA-CGGAGA
* *
12208089 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTTC
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
12208154 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12208219 CCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12208284 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACA-TCTCGAGTTTTTAGCTGAAATTTTTTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTG-AATTTTTTT
* * **
12208348 -TGCATGCCAACATAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAAACCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
12208412 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT-AGAAAATAGAAAACAAGTCATC
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA-AAAATAGAAAACGAGTCGTC
* *
12208476 TTGCCATGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12208541 CATTGGCACT-CAGAAATATGAAGATGTGCCTAAACGCCACGCTACCACCCCTAATCGATACAAG
581 CATTGGCA-TGCAGAAATATGAAGATGTGCCTAAAC-CCAC-CTACCA-CCCT-ATCGATCCACG
* * * * *
12208605 GCTTGCGCATCTGCGTTTCTCT-GCCGACAGTAGTGCTCGCGCTGCCGTCCC-CCGCTCCTTTCG
641 GCTTGCGCATC-CCGTCTCTCTGGCCGAC-GTAGTGC-C-CGCTTCC-ACCCGCCGCTCGTTTCG
** * * *
12208668 TCGGTTGTATTA-GCATACGAAGTTCATTCCCAGTCTAAGATTAG-TCCAGATCGAGGGTTATAG
701 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAT-CAGACCGAGGGTTACAG
* * * * * * * *
12208731 TAGTAGGATCGGCAGCAAACAAAAGGGGAACCAATCGATCCCCAGCTTGCGCATTGCCGCGCCAC
765 CAGTAGGATCGACAGCACACAGAGGGGGACCCAGTCGATCCCCAGCTTGCGCA-T-CC-CGCCCC
* * * * *
12208796 -CTAGCGCGACTGAGCACTTCCGCTACGCTGCGTTTCCCATGGGTTGACTTAGGCATACGGAGTT
827 TCTGGC-CGACTGAGCGC--CCGC-ACGCT-CGTTT--CGTGGGTTGACTTAGGCATATGAAGTT
12208860 CATTCCCAGTCTAA
885 CATTCCCAGTCTAA
*** * * *
12208874 GCATACGGAGTTCATTCCCAAAAAAAGATCAGATCAGA-TAGAGGGTTACGGCAGCACGTGCTGA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACT-GAGGGTTACGGCAGCACATGCTGG
** *
12208938 AATCGGGCATGTG-TCGGTGCCGCATTTTTCTACATCGGGGCACCA---TC--G---CA-GGAGA
65 GCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCACGGAGA
* * * **
12208993 ACCTGACC-AGCGGTATTGGGATTCCGATGATCGGGGCAGCCGGGGGGGTGTGCGCACATGATGT
129 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
12209057 GCGATGCGTGGTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12209122 CATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** * **
12209187 TTTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTATTTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12209252 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-CAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
12209316 AAGTTTAAAAAATCCCG-ATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12209380 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12209445 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12209510 ACATCCCGTCTCCCTGGCTGACGTAGTGCCC
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCC
12209541 ACCCGCTAAG
Statistics
Matches: 3700, Mismatches: 435, Indels: 233
0.85 0.10 0.05
Matches are distributed among these distances:
846 1 0.00
847 18 0.00
848 379 0.10
849 87 0.02
850 19 0.01
851 2 0.00
852 5 0.00
853 13 0.00
854 1 0.00
856 6 0.00
857 6 0.00
858 2 0.00
859 14 0.00
860 9 0.00
861 10 0.00
862 31 0.01
863 19 0.01
864 5 0.00
865 23 0.01
866 2 0.00
867 17 0.00
868 5 0.00
869 15 0.00
870 4 0.00
871 1 0.00
872 1 0.00
873 4 0.00
874 4 0.00
875 7 0.00
876 9 0.00
877 2 0.00
878 2 0.00
880 5 0.00
881 4 0.00
882 9 0.00
883 1 0.00
884 4 0.00
885 1 0.00
886 4 0.00
887 20 0.01
888 7 0.00
889 11 0.00
890 4 0.00
891 1 0.00
892 5 0.00
893 6 0.00
896 14 0.00
897 37 0.01
898 304 0.08
899 86 0.02
900 419 0.11
901 438 0.12
902 77 0.02
903 523 0.14
904 414 0.11
905 257 0.07
906 95 0.03
907 43 0.01
908 24 0.01
909 19 0.01
910 1 0.00
911 4 0.00
912 7 0.00
913 5 0.00
914 2 0.00
915 126 0.03
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCACGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCTTCCACCCGCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTACAGCAGTAGGATCGACAGC
ACACAGAGGGGGACCCAGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAA
Found at i:12215250 original size:902 final size:901
Alignment explanation
Indices: 12213069--12216597 Score: 4826
Period size: 895 Copynumber: 3.9 Consensus size: 901
12213059 GCATATTTTG
** ** * * *
12213069 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAGCATCGCCGGAGCATCGTCGGA
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGA
* * * *
12213134 GAACCTGGCCGGTGGCATTGGGGTTCCAACGATCGAGGGGCCGGAGGGGTGTGCGCACATGATGT
66 GAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGCCGG-GGGGTGTGCGCACATGATGT
* * *
12213199 GCGATGGGTGCTGGTACTTGACCCTTGTATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCA
130 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * **
12213264 CACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGTAGTAGCCATTAAAGTGTCTGAAAT
195 CACTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
12213329 GGGAACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGTTGAATATTTTTG
260 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12213394 TGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCA-AAAA
325 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAGAAAA
* ** *
12213458 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
389 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12213523 TCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGC
454 TCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
12213588 ATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-AGCTT
519 ATTGGCATGCAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTT
* ** * * * *
12213651 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCATCCGTCCGCCCTCTCTCTCGTTCCGTCGGTT
583 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTT
* * * *** * *
12213716 GGCTTAGGCATA-GGAGTTCATTCCCAGTCCAAGATTGGGGTAGACC-AGGGGTTGTGGTAGCAG
648 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGGTTGCGGTAGCAA
** **
12213779 GATCAACAGCA-AGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCG
712 GATCGGCAGCACA-CAGAGGGGGACCCGGTCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCG
*
12213843 GTTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
776 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
* * * * * * * * **
12213908 CGTACAGAATTCATTCCCAGTCTAAGATCGAATCGGACTAAGGGTTGCGACAGTACATATTG
841 CATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTAAGGGTTGCGATAGCACATA-CA
** * * *
12213970 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCAACATCGTCGAAGCATCGTCGGA
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGA
* ** * *
12214035 GAACTTGACCGGCGGCATTGGGGTTCC-G-G-T-----GATCGGGGGGT-TGCGCACATGAAGTA
66 GAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* **
12214091 CGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
131 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
12214156 ACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
196 ACTC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12214221 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
260 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * * **
12214286 TGCATACCAACAAAAATACAAGGATCACGTTTGCCATGTTTGGGACTAAAACTTTTTCAGAAAAA
325 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAA
*
12214351 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-ATGTCGTCT
390 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA-GTCGTCT
* *
12214415 TCCCATTAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
454 TCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12214480 ATTGGCATGCAA-AAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTG
519 ATTGGCATGCAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* *
12214544 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGCTCGTTTCATCGGTTG
584 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTG
* * *
12214609 GCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGA
649 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAAGA
* * * * *
12214674 TTGGTAGCACATAGAGGGGGACTCGGTCGATCC-CGAGCTTGCACATCCCGCCCCTCTGGTCGGT
714 TCGGCAGCACACAGAGGGGGACCCGGTCGATCCTCG-GCTTGCACATCCCGCCCCTCTGGCCGGT
* * * *
12214738 TGAGCGCCTGCGCGATCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTTCC-AGTCTAAGC
778 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCTAGTCTAAGC
* * * * *
12214802 ATACGGAGTTCATTCCCATTCTTAGATCGGACCGGACTGAGGGTTACGATAGCACATGCCA
842 ATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTAAGGGTTGCGATAGCACAT-ACA
* * * * *
12214863 GGCTCGCGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCAGACCATCATCGGA
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGA
* * * *
12214928 GAACCTGACCGGTGGCATTGGGGTTCCAGCGATTGGGGGGCCAGGGGGTGTACGCACATGATGTG
66 GAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
12214993 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
131 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
12215058 ACTCGCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAAT
196 ACTC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12215123 GGGGACACATTTTTCAAATAGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTG
260 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * *
12215188 TGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTATGGTCGAAACTCCTTCAGAAAAA
325 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAA
* * * * *
12215253 ATTTTACAAAATCCCGAACAGCAAGAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTT
390 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
12215318 GCCATGAAAGTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
455 CCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12215383 TTGGCACG-AAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
520 TTGGCATGCAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
* *
12215447 GCATCCCGTCACTCTGGCCGACGTAGT--------GCCCGCCCGCTCGCTCGTTTCGTCGGTTTG
585 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* * ** * *
12215504 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCTAACCAGATCGAGGGTTGCAGTAGCAAGAT
650 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAAGAT
* * * * **** * * *
12215569 CGGCAACACGCAGAGGGGGACCC-GACTGATCCTTGGCTTTTGTATCCGGCCCCTCCGGTCGGTT
715 CGGCAGCACACAGAGGGGGACCCGGTC-GATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGTT
* * *
12215633 GAGCGCCCGTACGCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCTAGTTTAAGCAT
779 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAT
* * * *
12215698 ACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAGGGTTGCGATAGCACATACT
844 ACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTAAGGGTTGCGATAGCACATACA
* * ** *
12215756 GGACTCGGGCATGGGCTGGTGCTACATTTTTCTTCACCGACGCACCATCGTCGGAGCATCACCGG
1 GG-CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGG
* *
12215821 AGAACCTTACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
65 AGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATG
12215886 TGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
129 TGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
12215950 CACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
193 CACA-CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
12216015 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
257 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
12216080 TTGTGCATGCCAAAAAAAATACAAGGATCACGTC-AGCCAAGTTTGGGGCCAAAACTCTTTCTGA
322 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCAGA
* *
12216144 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCG
386 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
12216209 TCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGA-AAGCCATAAAAA
451 TCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAA
*
12216273 TGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACG
515 TGGCATTGGCATGCA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** *
12216336 GCTTGCGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCAACCCGCCCGCCCGCTCGTTTCGT
579 ACTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGT
* * * * * *
12216400 CGGTTGGCTTAGGCATACGAAGTCCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACGGTA
643 CGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTA
* * *
12216465 GCAAGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGG
708 GCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCTCGGCTTGCACATCCCGCCCCTCTGG
* * *
12216530 CCGGTTGAGCACCCGCACGCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATTCGC-AGTC
773 CCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CTAGTC
12216594 TAAG
837 TAAG
12216598 ATTGGATCGG
Statistics
Matches: 2316, Mismatches: 268, Indels: 86
0.87 0.10 0.03
Matches are distributed among these distances:
891 82 0.04
892 419 0.18
893 288 0.12
894 331 0.14
895 460 0.20
896 5 0.00
898 1 0.00
899 1 0.00
901 94 0.04
902 446 0.19
903 186 0.08
904 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGA
GAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTC
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAAGATC
GGCAGCACACAGAGGGGGACCCGGTCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC
GGAGTTCATTCCCAATCTAAGATCGGACCGGACTAAGGGTTGCGATAGCACATACA
Found at i:12215720 original size:26 final size:26
Alignment explanation
Indices: 12215668--12215720 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12215658 GATGACTTAG
* * *
12215668 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12215694 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12215720 G
1 G
12215721 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12217012 original size:26 final size:26
Alignment explanation
Indices: 12216982--12217034 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12216972 GTTAACTTAG
*
12216982 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12217008 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12217034 G
1 G
12217035 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12217927 original size:26 final size:26
Alignment explanation
Indices: 12217898--12217950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12217888 GTTGCCTTAG
*
12217898 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
* *
12217924 GCATACGGAGTTCAATCCCTGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
12217950 G
1 G
12217951 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:12219739 original size:26 final size:26
Alignment explanation
Indices: 12219703--12219755 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12219693 GTTGACTTAG
12219703 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12219729 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12219755 G
1 G
12219756 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12220622 original size:26 final size:26
Alignment explanation
Indices: 12220593--12220645 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12220583 GTTGACTTAG
* *
12220593 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTAATTACCAGTCTAA
* *
12220619 GCATATGGAGTTAATTACCAGTCTAA
1 GCATACGGAGCTAATTACCAGTCTAA
12220645 G
1 G
12220646 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTAATTACCAGTCTAA
Found at i:12220996 original size:889 final size:890
Alignment explanation
Indices: 12216955--12222172 Score: 6654
Period size: 889 Copynumber: 5.8 Consensus size: 890
12216945 TCCCCGGGAT
* *
12216955 GCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
** * * * * *
12217020 CATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATCCTGGGCTTGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTG
* **
12217085 CTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGATA
131 CTGGTGCCATATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG
* *
12217150 GCATTGGGGTTCCGACGATCGGGGTTGCGCCGTATGGGGGGTGTGGCCGCACATGGATGTGGCGA
196 GCATTGGGGTTCCGGCGATCGGGG--GGGCC----GGGGGGTGT-G-CGCACAT-GATGT-GCGA
12217215 TGTGGTGCTGGTACTTGGGCCCTTATATTGGGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
251 TG-GGTGCTGGTACTT-GGCCCTTATATT--GGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12217280 CACCCCCTTAAAGAGCATTTGATATTTTACAGGGTTGCTGCCAGTAGCAATTAAAGTGTCTAAAA
312 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
* * * *
12217345 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTAGCTGAATTGTTTT
377 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** * **
12217410 GTGCTTGCCAACAAAAATACAAGTATCACGTCTAAGAAGTTTGGGACC-AAACTCCTTTTGAAAA
442 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*** * * * *
12217474 AATTTTAAAAAATCTTGAACCGTAAAAAGGTTT-GAAAATCGTGAAAAATAAAAAACGAGTCGTC
507 AATTTTAAAAAATCCCAAACCGCAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
12217538 TTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCTATAAAAATGG
571 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12217603 CATTGGCACGAAAAAATATGAAGA-GATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
636 CATTGGCACGTAGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** *
12217667 GCGCATTTCGTCTCTCTGGCCGGCGTAGTGCCCACCCACCCGCCCGCCCACTCGTTTCGTCGGTT
700 GCGCATCCCGTCTCTCTAGCCGGCGTAGTG--------CCCGCCCG----CTCGTTTCGTCGGTT
* * * * * * *
12217732 GGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAAGGGTTGCGGTAATAG
753 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-AGGGTTGCAGCAACAA
* * * * **
12217796 GATCGGTACCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACGTCCCGCCCCTCTGGCTGG
817 GATCGGCAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAG
12217861 CTGAGCACCC
882 CT-AGCACCC
* * *
12217871 GCACGCTCG-TTCTGTGGGTTGCCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGT
1 GCACGCTCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * *
12217935 TCAATCCCTGTCTAAGATTGGACCGGACAGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGT
65 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGT
* * * * *
12218000 GCTGGTGTCTTATTTTTCTTCACC-AGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGA
130 GCTGGTGCCATATTTTTCTTCACCGA-GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA
* **
12218064 CGGCATTGGGGCTCCGATGATCGGGGGGGCCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTG
194 CGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTG
* * **
12218129 CTGGAACTTGGCCCTTATATTGGACAACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
257 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
12218194 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGAGGACACT
322 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
* *
12218259 TTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAGGCCA
387 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
12218324 AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAGAGATTTTAAAA
452 ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * ** * *
12218389 AATCTCGAACCATAAAAAGCTTT-GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
517 AATCCCAAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
12218453 ACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
581 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* **
12218518 CAGAAATATGAAGACATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
646 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
12218583 CTCTCTAGCCGACGTAGTGCCCGCCCTCCTGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCGT
711 CTCTCTAGCCGGCGTA------G------TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
** * * * * * * *
12218648 ACAAAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTACGGTAGCAAGATCGGCAGCAC
764 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAACAAGATCGGCAACAC
* * ** ** *
12218713 GCAGAGTGGGACCCGACCGATCCCTGGCTTGCACATCCCGCCCCTCTAACTGGCGAGCACCC
829 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTAGCACCC
* * * *
12218775 GCATGCTCGATTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG--TA-GAGAGG
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-GA-G
* * * * *
12218837 TTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCACATGCTAGGTTCGGGCATG
64 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATG
* ** * * * * * * *
12218902 TGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCTCCGAAGAACTTGATCG
129 TGCTGGTGCCA-TATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
** *
12218966 GTGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATAATGTGCGATGGGTGC
193 ACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
12219030 TGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAA
258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * * * *
12219095 AGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGCGGACTCTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
* * * * * *
12219160 TTTTCAAATGGTTACAAAATCTTTTACACTTCGAGTTCTTAGCTGAATATATTTATGCATGCCAA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
12219225 CAAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAA
453 CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
12219290 ATCTCAAACTGCAAAAAGTTTCAAAAATCA-GAAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
518 ATCCCAAACCGCAAAAAGTTTCAAAAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
12219354 CTTCACGTGAAGGCTTAAGGGTCCATTGGATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
582 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * *
12219419 AGAAATATGAAGATGTGCCTGAACCCACCTACCACCATATCGATCCACAGCTTGCGCATCCCGTC
647 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
12219484 TCTCTGGTCGGAGTAGTGGCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTTGGCATA
712 TCTCTAGCCGGCGTAGT--------GCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
12219549 CGGAGTTCATTCCCAGTCTATGATCGGACCAGGCCGAGGGTTGC-GACAACAGGATCGACAGCAC
765 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAG-CAACAAGATCGGCAACAC
* * * * * *
12219613 GCAGAGGGGGACACAACTGATCCCCGGGTTGCACATCTCGCCCCTCTGGCCTA-CTGAGCTCCC
829 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCC-AGCT-AGCACCC
*
12219676 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
12219741 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTG
66 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTG
* ** * * *
12219806 CTGGTGCCATTTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGACG
131 CTGGTGCCATATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG
* * * ** *
12219871 GCATTAGGGTTCTGGTGATCGATGGGGCCAGGGGGGTATGCGCACATGATGTGCGATGGGTGCTG
196 GCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
12219936 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACTCCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
12220001 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
*
12220066 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
390 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
12220131 AAAATACAAGGATCACATCTACCAAGTTTGAGGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAA
455 AAAATACAAGGATCACATCTACCAAGTTTG-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
12220195 TCCCAAAGCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
519 TCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*** * *
12220260 TCTA-GTGAAGGCTTAAGGGGTGATTGTCTGAATTTACAAGCTAT-AAAATGGCATTGGCACGTA
584 TC-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
*
12220323 GAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
648 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
12220388 CTCTAGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
713 CTCTAGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * *
12220453 CAATATAAGATCGGACCAGACTGAGGGTTGCAGCAGCAAGATCGGCAACATGTAAAGGGGGACCC
778 CAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAACAAGATCGGCAACACGCAGAGGGGGACCC
* * *
12220518 GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTAGCGCCC
843 GACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTAGCACCC
* *
12220566 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
12220631 AATTACCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTG
* * *
12220696 CTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCAACG
131 CTGGTGCCATATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG
* * * * * *
12220761 GCATTGGAGTTCCGGTGAT-GGGGGGGCTGGGGGGGTGTGCCCACATGATGTGTGATGGGAGCTG
196 GCATTGGGGTTCCGGCGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
12220825 GTGCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAATG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * *
12220890 AGCATTCGAGATTTTACAAGTTTGCTGCGAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
*
12220955 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATA
390 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
12221020 AAAATACAAGGATC-CATCTACCAAGTTTGGGTCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
455 AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
*
12221084 CCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAATT
520 CCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
12221149 CACGTGAAGGGTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
585 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
* *
12221214 AATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
650 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
12221279 CTAGCCGACGTAGTGCCCACCCGCTCGTTTTGTCGGTTGGCATAGGCATACGGAGTTCATTCCCA
715 CTAGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * *
12221344 ATCTAAGATCGGACCAGACCAAGGGTTGCAGCAACAAGATCGGCAACACGTAAAGGGGGACCCGG
780 GTCTAAGATCGGACCAGACCGAGGGTTGCAGCAACAAGATCGGCAACACGCAGAGGGGGACCCGA
* *
12221409 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTAGCGCCC
845 CCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTAGCACCC
* *
12221455 GCACGCTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * * *
12221520 CATTCCTAGTATAAGATCAGATCAGACCGAGTGATGCAGCAGCACATGCTAGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTG
* * * * * * * * * *
12221585 CTGGTGTCGTATTTTTCTTC-CTCGAGGCACCACCATCAGAGCACCACTGGAGAACCTGACTGGC
131 CTGGTGCCATATTTTTCTTCAC-CGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
** * * * *
12221649 AACATTGGAGTTTCGGCGAT-GGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGCGCTG
195 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
12221713 GTACTTGGCCCTTATATT-GCCCCCTTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAA
260 GTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
12221777 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
324 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
*
12221842 TTTCAAATGGTCACAAAATCTTGTACAACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAA
389 TTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
12221906 CAAAAATACAAGGCTCACGTCTATCAGAG-TTGGGGCCCAAAAC-CCTT-C--AAAAA-TTT-AA
453 CAAAAATACAAGGATCACATCTACCA-AGTTTGGGG-CCAAAACTCCTTCCGAAAAAATTTTAAA
* * ** *
12221964 AAATCCCCGAACCGTTAAAAAGTTTTGAAAATCATGAAAAAATAAAAAACGAGTCGTCTTGCCAT
516 AAAT-CCCAAACCG-CAAAAAGTTTCAAAAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCAT
* *
12222029 G-AACTTCACGTGAAGGCCTTAAGGAACCATTGTAATGACATTTACAAGCCA-CAAAATGGCCAT
578 GAAACTTCACGTGAAGG-CTTAAGGGACCATTGT-ATGA-ATTTACAAGCCATAAAAATGG-CAT
* * * *
12222092 TGGCAGGGCAGAAATATGAAAAGATGTGCCTTCAACCCCACCTACC-CACTATCGATCCTAC-GC
639 TGGCA-CGTAGAAATATG--AAGATGTGCC-T-AAACCCACCTACCACCCTATCGATCC-ACGGC
12222155 TTGCGCATCCCGTACTCT
698 TTGCGCATCCCGT-CTCT
12222173 GGCCGACATA
Statistics
Matches: 3813, Mismatches: 413, Indels: 174
0.87 0.09 0.04
Matches are distributed among these distances:
884 6 0.00
885 11 0.00
886 37 0.01
887 50 0.01
888 355 0.09
889 729 0.19
890 220 0.06
891 126 0.03
892 10 0.00
893 27 0.01
894 18 0.00
895 5 0.00
896 5 0.00
899 5 0.00
900 563 0.15
901 61 0.02
902 142 0.04
903 227 0.06
904 610 0.16
905 345 0.09
906 13 0.00
907 12 0.00
908 6 0.00
909 13 0.00
910 7 0.00
911 5 0.00
912 6 0.00
914 4 0.00
915 4 0.00
916 189 0.05
917 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTG
CTGGTGCCATATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG
GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TAGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCAGACCGAGGGTTGCAGCAACAAGATCGGCAACACGCAGAGGGGGACCCGAC
CGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTAGCACCC
Found at i:12221512 original size:26 final size:26
Alignment explanation
Indices: 12221482--12221534 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12221472 GTAGACTTAG
*
12221482 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
* *
12221508 GCATATGGAGTTCATTCCTAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
12221534 G
1 G
12221535 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:12224621 original size:871 final size:868
Alignment explanation
Indices: 12222272--12224661 Score: 3320
Period size: 876 Copynumber: 2.7 Consensus size: 868
12222262 GACGTCCCAT
* *
12222272 CGAGGGTTGCGAGAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCATCGGGG
1 CGAGGGTTGCG-GAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGG
* ** * * *
12222337 CACCACCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCAGGGGGG
65 CACCATCATCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGG
** * *
12222402 CCGGTGGGGTGCACGCGCAT-ATGTGCAATGGGGGCTGGTACTTGGCCCTTATATTGGCCCCCTA
130 CCGGTGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
12222466 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
12222531 CCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
260 CCAGTAGCCATTAAAGTGTCCGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
12222596 TTCGAGTTTTTAGGCTGAA-TTTTTTGTGCATGCCAACAAAAATACCAAGGATCATGTCTACCAG
325 TTCGAGTTTTTA-GCTGAATTTTTTTGTGCATGCCAACAAAAATA-CAAGGATCACGTCTACCAG
* * *
12222660 GTTTGGGGGCCTCAAA-CTCTTCCAAAAAAATTTTAAAAAATCCCGAACTTGCAAAAAGGTTTTG
388 GTTT-GGGG-C-CAAACCTCTTTCAAAAAAATTTTAAAAAATCCCGAAC-CGCAAAAA-G-TTTC
* *
12222724 AAAAATTGGTGAAAAATAGAAAACG-GTCGTCTTG-CATGAAACTTCACATGAAGGCTTTAAGGG
447 AAAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC-TTAAGGG
* * *
12222787 ACCATTATATGAA-TTAC-AGCCCAT-AAAATGGCATTGGCACGTAGAAATATGAGGATGTGCCT
510 ACCATTGTATGAATTTACAAG-CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
* * *
12222849 AAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCTTAGTGCC
574 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCC
*
12222914 CGCCCGTCCGCCCGATCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
639 CG--C--CCACCCGATCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
*** ** ** * *
12222979 TGGATTAGACCAAGGGTTGTGGTAGCAGGATCGACAACACGCAGAGGGGGACCTGGCCAATCCCC
700 CAAACCAGACCAAGGGTTGTGCCAGCAAGATCGACAACACGCAGAGGGGGACCCGGCCAATCCCC
** * * * *
12223044 GACTTGTGCATCCCGCCCCTCTGGCTGGCGGAGTGCCCGTATACTCGTTTCGTGGGTTAACTTAC
765 GACTTGCCCATCCCGCCCCTCTGGCCGGCGGAGCGCCCGTACACTCATTTCGTGGGTTAACTTAC
* *
12223109 GCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAGAC
830 GCATACGAAGGTCATTCCCAGTCAAAGATCAGACCAGAC
** * * * *
12223148 TAAGGGTTGCGATAGCACATGCTGGGCTCGTGCTTGTGCTGGTGCCATATTTTTCTTCGTCGGGG
1 CGAGGGTTGCG-GAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGG
** *
12223213 CACCATCATCGGAGCATCACCAGAGAACTTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGG
65 CACCATCATCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGG
* *
12223278 CCTGTGGGGTGTGCGCACATGATGTGCAATGGGTTCTGGTACTT-GCCCTTATATTGGCCCCCTA
130 CCGGTGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
12223342 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
12223407 CCAGTAGCAATTAAAGTG-CCTGAAA-TGGGTACACTTTTTTCAAATGGTCACAAAATCTCGTAC
260 CCAGTAGCCATTAAAGTGTCC-GAAATTGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
12223470 CCTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAG
323 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAG
* **
12223535 GTTTGGGGCCAAAACCTCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTTAAAA
388 GTTTGGGGCC-AAACCTCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
*
12223600 TCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
452 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
12223665 TACGAATTTACAAGCCATAAAAATGGCATTGGGATGCA-A-AAATATGAAGATGTGCCTAAACCC
517 TATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCC
* * * *
12223728 ACCTACCACCATATCGATCCATGACTTGCGCATCCCGTTTCTCTGGTCGGCATAGTACCCGCCCA
580 ACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCA
* * * * * * * *
12223793 CCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTTCCAGTGTAAGATCAAACCGGAC
645 CCCGATCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGAC
* * * * * * *
12223858 CAAGGGTTGTGCCAGCAAGATCGGCAGCAGGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCCCA
710 CAAGGGTTGTGCCAGCAAGATCGACAACACGCAGAGGGGGACCCGGCCAATCCCCGACTTGCCCA
* * * *
12223923 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAG
775 TCCCGCCCCTCTGGCCGGCGGAGCGCCCGTACACTCATTTCGTGGGTTAACTTACGCATACGAAG
* ** *
12223988 GTCATTCCCAGTCTAAGATTGGA-CTGCAC
840 GTCATTCCCAGTCAAAGATCAGACCAG-AC
* *
12224017 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTTGTCGGGG
1 CGAGGGTTGCGG-AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGG
* * * * * *
12224082 CACCATCATCGGAGTATCGTTAGAGAACCTGACCGGCGGCATTAGGGTTCCGATGATC-GGGGCA
65 CACCATCATCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGG-G
* * * * ** *
12224146 CCCGGGGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGTGCTTATATTGTCCCC
129 GCC--GGTGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
12224211 CTATCCCTCATCAAACGC-CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
192 CTATCCCTCATCAAAC-CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
12224275 GCTGCCAGTAGCCATTAAAGTGTCCGAAATTGGGACACTTTTTTCAAATGGCCACAAAATCTTGT
256 GCTGCCAGTAGCCATTAAAGTGTCCGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
12224340 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
321 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
12224405 AAGTTT-GGGCCAAACCTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAA
386 AGGTTTGGGGCCAAACCT-CTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* *
12224469 AATCCTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
450 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
12224534 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
515 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
* * * *
12224599 ACCTATCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
580 ACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCC
12224662 TGCCCGCCCG
Statistics
Matches: 1345, Mismatches: 144, Indels: 55
0.87 0.09 0.04
Matches are distributed among these distances:
868 6 0.00
869 293 0.22
870 24 0.02
871 293 0.22
872 227 0.17
873 110 0.08
874 36 0.03
875 33 0.02
876 302 0.22
877 21 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (868 bp):
CGAGGGTTGCGGAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGC
ACCATCATCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGC
CGGTGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCCGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTT
TGGGGCCAAACCTCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCACCCGAT
CATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGG
TTGTGCCAGCAAGATCGACAACACGCAGAGGGGGACCCGGCCAATCCCCGACTTGCCCATCCCGC
CCCTCTGGCCGGCGGAGCGCCCGTACACTCATTTCGTGGGTTAACTTACGCATACGAAGGTCATT
CCCAGTCAAAGATCAGACCAGAC
Found at i:12225331 original size:720 final size:721
Alignment explanation
Indices: 12223954--12225381 Score: 2218
Period size: 720 Copynumber: 2.0 Consensus size: 721
12223944 AGCGCCCGTA
* **
12223954 CGCTCATTTCGTGGGTTGACTTAGGCATACGAAGGTCATTCCCAGTCTAAGATTGGACTGCACCG
1 CGCTCATTTCGTCGGTTGACTTAGGCATACGAAGGTCATTCCCAGTCTAAGATCAGACTGCACCG
* * *** *
12224019 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTTGTCGGGGCA
66 ACGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCA
* * * *
12224084 CCATCATCGGAGTATCGTTAGAGAACCTGACCGGCGGCATTAGGGTTCCGATGATCGGGGCACCC
131 CCATCACCGGAGCATCGTTAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGCACCC
** * *
12224149 GGGGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGTGCTTATATTGTCCCCCTA
196 ---GGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTA
* *
12224214 TCCCTCATCAAACGCCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
258 TCCCTCATCAAACGCCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGATTTGCTG
*
12224279 CCAGTAGCCATTAAAGTGTCCGAAATTGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACAC
323 CCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACAC
* * *
12224344 TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
388 TTCAAGTTTTTAGCTGAATTGTTTTGTGCATGACAACAAAAACACAAGGATCACGTCTACCAAGT
*
12224409 TTGGGCCAAACCTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCC
453 TTGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCC
* * * *
12224474 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
518 TAAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
*
12224539 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
583 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** *
12224604 TCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGC
648 CCACCCTATCAATCCACAGCTCGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGC
12224669 CCGTTCGCC
713 CCGTTCGCC
* * * * * *
12224678 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGGTCATTCCTAGTCTAAGATCAGACTGGACTG
1 CGCTCATTTCGTCGGTTGACTTAGGCATACGAAGGTCATTCCCAGTCTAAGATCAGACTGCACCG
12224743 ACGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCA
66 ACGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCA
* * * **
12224808 CCATCACCGGAGCATTGTTAGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGTCCC
131 CCATCACCGGAGCATCGTTAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGCACCC
*
12224873 -GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCC
196 GGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCC
*
12224937 CTCATCAAAC-CTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGATTTGCTGCT
261 CTCATCAAACGC-CGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGATTTGCTGCC
** *
12225001 AGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
325 AGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTT
** *
12225066 TGAGTTTTTAGCTGAATTGTTTTGTGCATGACAACAAAAACACAAGGATCATGTCTACCAAGTTT
390 CAAGTTTTTAGCTGAATTGTTTTGTGCATGACAACAAAAACACAAGGATCACGTCTACCAAGTTT
* ** *
12225131 GGGGCCAAAACTCC-TTCTAAAAAAGTTTT-AAAAATCTTGAA-CAGTAAAAAGTTTCAAAAATC
455 -GGGCCAAAACTCCTTTCGAAAAAA-TTTTAAAAAATCCCGAACCA-CAAAAAGTTTCAAAAATC
* *
12225193 GTAAAAAATAGAAAACGAGTCGTCTTGCAATGACACTTCACATGAAGGCTTAAGGGACCATTGTA
517 CTAAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
*
12225258 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
582 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
*
12225323 ACCACCCTATCAATCCACAGCTCGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
647 ACCACCCTATCAATCCACAGCTCGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
12225382 CTCTCGTTTC
Statistics
Matches: 640, Mismatches: 60, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
719 3 0.00
720 450 0.70
721 16 0.03
724 171 0.27
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (721 bp):
CGCTCATTTCGTCGGTTGACTTAGGCATACGAAGGTCATTCCCAGTCTAAGATCAGACTGCACCG
ACGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCA
CCATCACCGGAGCATCGTTAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGCACCC
GGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCC
CTCATCAAACGCCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGATTTGCTGCCA
GTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTC
AAGTTTTTAGCTGAATTGTTTTGTGCATGACAACAAAAACACAAGGATCACGTCTACCAAGTTTG
GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCCTAA
AAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCAATCCACAGCTCGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCG
TTCGCC
Found at i:12226616 original size:191 final size:191
Alignment explanation
Indices: 12226279--12226631 Score: 507
Period size: 191 Copynumber: 1.8 Consensus size: 191
12226269 CCCACCCGTT
12226279 CGCCCGCCCGCTCGATTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGA
1 CGCCCGCCCGCTCGATTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGA
* * * *
12226344 CCGCACTGAGGGTTATGGTAGTAGGATTGGCAGCACGTAGAGGGGGAGCCAGTCTATCCCCGGCT
66 CCGCACTGAGGGTTATGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCAGTCTATCCCCAGCT
*
12226409 TGCACATCCTGCCCCTCTGGCTGACTGAGCACTTGCACGCTCGCTCGCTCGCCTGCCCGCC
131 TGCACATCCTGCCCCTCTGGCAGACTGAGCACTTGCACGCTCGCTCGCTCGCCTGCCCGCC
* * * * *
12226470 CGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGCCCGCTCGATTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGA
* * * *
12226535 CCAG-ACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGGTGGACCC-GAT-TGATCCTCA
66 CC-GCACTGAGGGTTATGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCAG-TCT-ATCCCCA
*
12226597 GCTTGCACAT-CTCGCCCCTCTGGCAGGCTGAGCAC
128 GCTTGCACATCCT-GCCCCTCTGGCAGACTGAGCAC
12226632 CCGCACACTC
Statistics
Matches: 143, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
190 4 0.03
191 138 0.97
192 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.23
Consensus pattern (191 bp):
CGCCCGCCCGCTCGATTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGA
CCGCACTGAGGGTTATGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCAGTCTATCCCCAGCT
TGCACATCCTGCCCCTCTGGCAGACTGAGCACTTGCACGCTCGCTCGCTCGCCTGCCCGCC
Found at i:12226697 original size:26 final size:26
Alignment explanation
Indices: 12226661--12226713 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12226651 GTTAACTTAG
*
12226661 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
12226687 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12226713 G
1 G
12226714 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12228316 original size:26 final size:26
Alignment explanation
Indices: 12228282--12228333 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12228272 TTGACTTAGC
12228282 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACGGAGTTCATTCTCAGTCTAAG
* *
12228308 CATATGGAGTTCATTCTGAGTCTAAG
1 CATACGGAGTTCATTCTCAGTCTAAG
12228334 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCTCAGTCTAAG
Found at i:12230110 original size:872 final size:872
Alignment explanation
Indices: 12227380--12236935 Score: 11341
Period size: 872 Copynumber: 10.9 Consensus size: 872
12227370 CCCGCCCACC
* * * * *
12227380 CGCTCCTTTCGTCGGTTGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCGGACCAGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * *
12227445 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTAATTTTCTTCACCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
*** * * * * *
12227510 CCATTACCGGAGCATCATCGGAGATCCTGACCGGCAGCATTGGGGTTCCGACGATCGAGAGGGCT
131 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC
* * * * *
12227575 GGGGGGAGTGCGCACATGATGGGCGATGGGTGCTGCTACTTGGCTCTTATATTTTG-CCCCTATC
195 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TTGGCCCCCTATC
* * * * *
12227639 CCCCATCAAACCTCGAGGACTCACACCCCTTTAAAGAGCATTTGATATTTTATAGGTTTGCTGCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
12227704 AGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
12227769 TGAGTTTTTAGCTGATTTTTTTTGTGCATGACAACAATAATACAAGGATCACGTCTACCAAGTTT
389 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
12227834 GGGGCCAAAAC-CCTTTCCGAAAAAATTTTAAAAAATCCTGAACCGTACAAAGTTTAAAAAATCA
454 GGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCG
*
12227898 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
518 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
12227963 GAATTTTCAAGCCCTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTA
583 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
12228028 CCACCCTATCGATCCACGGGTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGTCCAC
648 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* *
12228093 CCGCCTATTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
713 CCG-C---TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
* ** * * * * *
12228158 GACCGAGGGTTGCAACAGCAGTATCGGTAGCACGCAGAGAGGGACCCGATCGATCCGCGACTTGC
774 GATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
* *
12228223 GCATCCCGCCCCTCTGGCCGGCTAAGCGCCTGCA
839 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
12228257 CGCTCATTTCATGGGTTGACTTAGCCATACGGAGTTCATTCTCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-----T-TCA-T-T---C----------C--
* * ** * * * *
12228322 TCTGAGTCTAAGATCAGACCGGACCGAGGGTTATGACAGCACATGCTTGGCTCGGCCATATGCTG
43 -C--AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * ** * *
12228387 GTGCTGCATTTTTCTTCACCGAGGCA-CATCGTCGGAGCATCACCGGAGAACCTGACCGGTGACA
105 GTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* *
12228451 TTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
170 TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
12228516 TGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
235 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
12228581 TTGAGATTTTACAGATTTACAGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
300 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
12228646 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATATTTTATTTTTGCATGCCAACAAA
365 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GA-ATTTT-TTTGTGCATGCCAACAAA
* * *
12228711 AATTCAAGGAACACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT-C
427 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
12228775 TCGAACCGTAACAAGTTTCAAAAATCGTGAAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTC
492 T-GAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * ** * **
12228840 AGGTGAAGGCTTAAGGGACCATTGTACGAGTTTACAAGAAATAAAAAAGGCATTGGCACACAGAA
556 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * *
12228905 ATATGAATATGCGCCAAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTC
621 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
12228970 TGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGCTC
686 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
*
12229035 ATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGG
751 ATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * * * * *
12229100 GACCCGACCGATCCTCGACTTACGCATCTCGCCCCTCTAGCCGGTTGAGCGCCCGCA
816 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
** * * *
12229157 CGCTCGTTTTATGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * **
12229222 AGGGTTTCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCCCATTTTTCTTCGTCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
* * * * * *
12229287 CCATCGTCAGAGCATCGTCGGGGAACCTAACCGGTGGCATTGGGGTT-CTAGCGATCGGGGGGTC
131 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCC
* * *
12229351 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGTCACTTATATTGGCCCCCTATCC
195 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
12229416 CTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTATAGGTTTGCTGCCA
260 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
12229481 GTAGCCATTAAAGTGTCTGAAATGGGGAGACTTTTTTCAAATGGCCACAAAATCTTGTACACTTC
325 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
12229546 GAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
390 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
12229611 GGGCCAAAAATCCTTCTGAAAAAATTTTCAAAAATCCTGAACCACAAAACA-TTTCAAAAATTGT
455 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAA-AGTTTCAAAAATCGT
* *
12229675 GAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATG
519 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* **
12229740 AATTTACCAGCCATAAAAATGTAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
584 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
12229805 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATGGTGCCCGCTCGCCTGCC
649 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * * * *
12229870 TGCTCGTTTCGTTGGTTGGCTTCGGCATACGGAGTTCATTCCAAGTCTAAGATTGGACCGGATCA
714 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCG
** * * * *
12229935 AGGGTTAAGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
779 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * * *
12230000 CCACCCCTTTGGCCGGCTGAGCACCTGTA
844 CCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* **
12230029 CGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * ** *
12230094 AGGGTTGCAGCAGCACATG-TAGGGCTCGGGCATGTTCTGGTGCCGCATTTTTCTTCGTCGGTGC
66 AGGGTTGCGGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
* * * *
12230158 ACCATCGCCGGAGCATCATCGGAGAACCTGTCCGACGGCATTGGGGTTCCGACGATCGGGGTGGC
130 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGC
* * * * * *
12230223 CGGGGGGGTGTGTGCACATGATTTACGATGGGTTCTGGCACTTGGACCTTATATTGGCCCCCTAT
194 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
12230288 CCCTCATCAAACCTTGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGT
258 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
12230353 CAGTAGCCATTAACGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACT
323 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
12230418 TCAAGTTTCTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA-ATAAGATCATGTCTACCAAGT
388 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA-AGGATCACGTCTACCAAGT
* * * *** *
12230482 TTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTTGAACTGCAAAAATTTTCAAAAATC
452 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATC
*
12230547 GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
517 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
12230612 TGAATTTACAAGCCAGAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
582 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * ** *
12230677 ACCACCCTATCCATCCACGGCTTGCGCATCCTGTCTCTTTGGTTGGCGTAGTGCCCGCCTGCCCA
647 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCG
* * **
12230742 CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
708 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
* * * * * *
12230807 AGACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCATAGGGGGACCCGACCGATCCCTGACTTG
773 AGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
* *
12230872 CGCATCCCGCCCCTCTGGCCGACTGAACGCCCGCA
838 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
12230907 CGCTCGTTTCGTGGGTTGACTTAGGCTTACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * *
12230972 AGGGTTGCGGTAGTACATGCTGGGCTCGGGCATATGCTGGTGCCACATTTTTCTTCACCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
*
12231037 CCA---T-----CA---TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCCG
131 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
* * * * *
12231091 AGGGAGGTGCGCACACATGTTGTGCAATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATC
196 -GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
12231156 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGTC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
12231221 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
12231286 CAAGCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGCTT
389 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* **
12231351 GGTGCCAAAACTCCTTCCGAAAAAATTTT---AAAT--TG---C--AAAAAGTTTTTGAAAATCG
454 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAG-TTTCAAAAATCG
* * * * *
12231406 TTAATAATAGAAAACAAGTCGTCTTGCCATGAAACATAACGTGAAGGCTTAAGGGACCATTGTAT
518 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** **
12231471 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGACATGCCTAAACCCACCTA
583 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * *
12231536 CCACCTTATAGATCCACGGCTTGCGCATCCCGTCTCTTTGGCTGACATAGTGCGCACCCGCCCGC
648 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--G--CCCGCCCGC
* *
12231601 CCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA
709 CCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * * * * * * *
12231666 ACTAGATCGAAGGTTGTGGCAGCAGTATTGGTAGCTCGCAGAGGGGGACTCGATCGATCCCCGGC
770 ACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
*
12231731 TTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCA
835 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * * *
12231769 CGCTCATTTCATGGGTTGACTTTGGCCTATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * *
12231834 AGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
** *
12231899 CCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGAT--------CG
131 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
* * * * *
12231956 GGGGGTGTGTGCACATGATGTGCGACGGGCGCTGGTACTTGGCCCTTATATTGGCCTCTTATCCC
196 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
12232021 TCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCGAG
261 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
12232086 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCC
326 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
12232151 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT-G
391 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
12232215 GG--------------G-----A---T-AAAACTCCT---TC-TAAAAAGTTTCAAAAATCATGA
456 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGA
* * *
12232253 AACATAGAAAATGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
521 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** * *
12232318 TTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTCCCTAAACCCACCTACCA
586 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
12232383 CCCTAACGATCCATGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCTG
651 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC--C-G
* * * * * * *
12232448 CCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAGTGTATCGGAT
712 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAT
* * * * * *
12232513 CGAGGGTTGTGGCAACAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCA
777 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
** * * *
12232578 TCCTACCCCTATGGCCGGCTAAGCGCCTGCA
842 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
12232609 CGCTCGTCTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* **
12232674 AGGGTTGCGGCAGCACATGCCGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
* * * * *
12232739 CCATCGTTGGAGCATCATCGGAGAACCTGACCGACAGCATTGGCGTTCCGACGATCGGGGGGCCG
131 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
* * *
12232804 GGGGGCTGTGTGCACATGAGGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCC
196 GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
12232869 CTCATCAAACCTCGAAAACTCACACCCCCTTAAAGGGCATTTGAGAATTTACAGGTTTGCTGCCA
260 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
12232934 GTAGCAATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTT
325 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
12232998 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
390 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
12233063 GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTTGAACTATAAAAAGTTTCAAAAATCATG
455 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTG
** * *
12233128 AAAAATAGAAAATTAGTCGTCTTGCGATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
520 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
12233193 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
585 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
12233258 ACCCTATCGATCCACGGCTTGCGCATCCCGTGTCTGTGGACGGTGTAGT----GCCCGCCCGTCC
650 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* ** *
12233319 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGATCAA
715 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGA
* * * * * * * *
12233384 GGGTTGTGGTAGCAGGATCGACAGCATGTAGAGGGGGACCCGGGT-GACCCCCGGCTTTCGCATC
780 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GATCGATCCCCGGCTTGCGCATC
* * * *
12233448 CCACCCTTCTGGCCGACTGAGCGGCCGCA
844 CCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
12233477 CGGTCGATTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAATGTAAGCATACGGAGTTCAT
1 C-G-C---TCGT---TT--C----G--T--GG-GTTGA----C--T-TAGGCATACGGAGTTCAT
* * *
12233542 TCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTG
40 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * * * *
12233607 GTGCCACATTTCTCTTC-CCTGCGGCACCGTCGTCGGAGCTTTGCCAGAGAACCTTACCGGCGGC
105 GTGCCGCATTTTTCTTCACC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGC
*
12233671 ATT-GGGTATCCGACGATCGGGGGGGTCGGAGGGGTGCGGTTTGCGCACATGATGTGCGATGGGT
169 ATTGGGGT-TCCGACGATC-GGGGGGCCGG-GGGGT---G--TGCGCACATGATGTGCGATGGGT
* *
12233735 GCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTT
226 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
12233800 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACAC
291 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
12233865 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTTATGCATGCT
356 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
12233930 AACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAA
421 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * *
12233995 AAATCCTGAACCGTAAAAAGCTTCAAAAATCTTAAAAAATAAAAAACGAGTCGTCTTGCCATGAA
486 AAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * **
12234060 GCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGAACTGGCACA
551 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
12234125 CAGAAATATGAAGATGTACCTAAGCCCACCTACCACCCTATTGATCCACAGCTTGCGCATCCCGT
616 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
12234190 CTCTCTAGCCAGCGTAATGCCTGCCTGCCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCAT
681 CTCTCTGGCCGGCGT-A-G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * ** * **
12234255 ATGGAGTTCATTCCCAGCCTAAGATCGGACC-GAACTC-AGTTTTGCGGTAGCAGGATCGATAGC
742 ACGGAGTTCATTCCCAGTCTAAGATTGGACCAG-A-TCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * * *
12234318 ACACAGAAGGGGACCCG-GCTGATCCCCGACTTGCACATCCCACCCCTTTGGCCAGCTGAGCGCC
805 ACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
12234382 CGCA
869 CGCA
* * *
12234386 CGTTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATAC-G-G---------AGT-T---C------A-TTC--
* * *
12234451 TCCTAGTCTAAGATCGGACCAGAACGAGAGTTGTGGCAGCACATGCTGGGCTC-GGCATGTGCTG
42 -CC-AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
12234515 GAGCAGCATTTTTCTTCACCGGGG---CA-C--C----C-TCGTCGGAGAACCTGACCGGCGACA
105 GTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
*
12234569 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTAC
170 TTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
12234634 TTGGCCCTTATATTGGCTCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
234 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
12234699 GTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCA
299 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
12234764 AGTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
364 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * *
12234829 TGCAAGGATCAAGTCTACCAAGTTTGGGGCCAGAAA-TCTTTCCGAAAAAATTTTAAAAAAT-TT
429 TACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAAAAATTTTAAAAAATCCT
* * *
12234892 GGAACCCTAAAAAGTTTCAAAAATCAT-AGAAAATAGAAAACGATTCGTCTTGCCATGAAACTTC
493 -GAACCATAAAAAGTTTCAAAAATCGTGA-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
12234956 ACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
556 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
*
12235021 ATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
621 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
12235086 TGGTCGGCATAGTGCCCGACCGCCCGCCCGCCCACCCGTCCGCTCGTTTCATCGATTGCCTTAGG
686 TGGCCGGCGTAGTG--C--CCGCCCGCCCG------C--CCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
12235151 CATAAGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTACAGCAACAGGATCGGCAG
739 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * *
12235216 CACGCAGAGGGGAACCCGATCGATCCCCGGCTTGTGCATCCGGCCCCTCTGGCCGGTTGGGTGCC
804 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
12235281 TGCA
869 CGCA
* * * * ** *
12235285 CGCTCCTTTCGTGCGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCAGACTGGACCA
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * **
12235350 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTGCCGGTGCCATATTTTTCTT----------
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
** * * *
12235405 -CA---TCGGAGCATCGTCGGAGAACCTGA-CGGACTACACTT-GGGTTCTGGCGATCGGGGACG
131 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGG-CGGCA-TTGGGGTTCCGACGATCGGGG-GG
* * * * *
12235464 CCGGGAGGGGTGTACGCACATGATGTGCGGTGGGTGCCGGTACTTGG-CCTTCTATTGGCCCCTT
193 CC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
12235528 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCT
256 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
12235593 GCCAGTAGCCATTAAAGTGTGTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTTCA
321 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * *
12235658 CTTCTAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCACATCTACTAAG
386 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** * * * **
12235723 TTTACGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTGGAAAA
451 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCATAAAAAGTTTCAAAAA
* * * *
12235787 TCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAAATTCATGTGAAGGCTTAAGGGACCATTG
515 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
12235852 TATGAATTCACAAGCCATAAAAATGCCATTGGTAGGCAGAAATATGAAGATGTGCCTAAACCCAC
580 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
12235917 CTACCAACCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCGGCGTAGTGCCTGCCTACC
645 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CC-GCC
* * * * * ***
12235982 CGTCCGCCCGTTTGTTTCGACGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCCAA
706 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
* * * * * ** *
12236047 CCCGA-CTGAGGGTT-----A-C-GG-T----AGCATGCAAAGGTGGACTCGGCCGATCCACGGC
771 CCAGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
* *
12236099 TTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGTA
835 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * * *
12236137 CGCTCGTTTCATTGGTTGGCTGAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * *
12236202 AGGGTTCCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
* * * * *
12236267 CCATCGTCGGAGCATCGCCAGAGAACCTGATCGACGGCATTGGGGTTCCTACGATCGGGGGGGCC
131 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC
* * *
12236332 AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGCCCCTTATATTGGCCTCCTATC
195 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * ** * * * *
12236397 CCTCATCAAACTTTGAGATCTCATGCTCTCTTATAGAGCAATTGAGATTTTACAGGTTTGCTGCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
** * *
12236462 AGTAGCCATTAAAGTGTCTGAAATGGCAACACTTTTTTCAAATGGTCAAAAAATCTTGAACACTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * ** * *
12236527 CGAGTTTTTAGCTGAACTTTTTTGTGCATGCCAACAAAAATATAAGGATCTTGTCTACCAAGCTC
389 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
12236592 GGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAAT-CTCAAACCATAAAAAGTTTCAAAAATCG
454 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCATAAAAAGTTTCAAAAATCG
* *
12236656 TGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTTAGGGACCATTGTAT
518 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
12236721 GAATTTACAAGCCATAAAAATGGCATTGGGAGGCAGAAATATGAAGATGTGCCTAATCCCATCTA
583 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
12236786 CCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCTGCCCGC
648 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
*
12236851 CCGCTCG-TTCGTTTTATCGGTTGGCTTAGTCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
713 CCGCTCGTTTCG-----TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
* * *
12236915 AGACCGAGGGTTACGACAGCA
773 AGATCGAGGGTTGCGGCAGCA
12236936 CATGTTGGGC
Statistics
Matches: 7466, Mismatches: 956, Indels: 518
0.84 0.11 0.06
Matches are distributed among these distances:
840 306 0.04
841 2 0.00
842 5 0.00
843 2 0.00
844 172 0.02
845 6 0.00
848 107 0.01
849 138 0.02
852 158 0.02
856 1 0.00
857 7 0.00
858 181 0.02
859 3 0.00
860 4 0.00
861 4 0.00
862 275 0.04
863 239 0.03
864 66 0.01
865 41 0.01
866 510 0.07
867 303 0.04
868 136 0.02
869 5 0.00
870 13 0.00
871 47 0.01
872 997 0.13
873 136 0.02
874 556 0.07
875 244 0.03
876 186 0.02
877 33 0.00
878 255 0.03
879 2 0.00
882 2 0.00
883 10 0.00
884 5 0.00
885 2 0.00
886 3 0.00
887 7 0.00
888 4 0.00
889 3 0.00
890 7 0.00
891 458 0.06
892 4 0.00
893 7 0.00
894 146 0.02
895 12 0.00
896 9 0.00
897 44 0.01
898 11 0.00
899 148 0.02
900 306 0.04
901 506 0.07
902 51 0.01
903 83 0.01
904 273 0.04
905 7 0.00
908 31 0.00
909 185 0.02
910 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (872 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAG
GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC
GCCCCTCTGGCCGGCTGAGCGCCCGCA
Found at i:12233553 original size:26 final size:26
Alignment explanation
Indices: 12233501--12233553 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12233491 GTTGACTTAG
* *
12233501 GCATACGGAGTTTATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12233527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12233553 G
1 G
12233554 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12234440 original size:26 final size:26
Alignment explanation
Indices: 12234410--12234462 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12234400 GTTGACTTAG
12234410 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
12234436 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12234462 G
1 G
12234463 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12237527 original size:719 final size:715
Alignment explanation
Indices: 12236129--12237642 Score: 2219
Period size: 719 Copynumber: 2.1 Consensus size: 715
12236119 GCCGGCTGAG
* * * *
12236129 CGCCCGTACGCTCGTTTCATTGGTTGGCTGAGGCATAAGGAGTTCATTCCCAGTCTAAGATCA-G
1 CGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGG
* * **
12236193 ACCAGACCGAGGGTTCCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
65 ACCAGACCGAGGGTTACGACAGCACATGTTGGGCTCGAACATGTGCTGGTGCCGCATTTTTCTTC
* * *
12236258 ACTGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGATCGACGGCATTGGGGTTCCTACGATC
130 ACTAGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* *
12236323 GGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGCCCCTTATATTGG
195 GGGGGGGCCAGGGGGGTGTGCGCACATCATGTGCGATAGGTGCTAGTACTTGCCCCTTATATTGG
* * * * ** * * * *
12236388 CCTCCTATCCCTCATCAAACTTTGAGATCTCATGCTCTCTTATAGAGCAATTGAGATTTTACAGG
260 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAAG
*
12236453 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGCAACACTTTTTTCAAATGGTCAAAAAATCT
325 TTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGCAACACTTTTTTCAAATGGTCAAAAAATCT
** * * * **
12236518 TGAACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATGCCAACAAAAATATAAGGATCTTGTCT
390 TGAACACTTCGAGTTTTTAGCTGAACTTTTTTGAACATGCCAAAAAAAATACAAGCATCACGTCT
* * * *
12236583 ACCAAGCTCGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCTCAAACCATAAAAAGTTTC
455 ACCAAGCTCGGAGCCAAAACTCCCTCCAAAAAAATTTAAAAAAATCCCAAACCATAAAAAGTTTC
* * *
12236648 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTTAGGGAC
520 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGAC
* * *
12236713 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGAGGCAGAAATATGAAGATGTGCCTAAT
585 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGAGGCAGAAATATGAAGATATACCTAAA
* **
12236778 CCCATCTACCACCCTATCGATCCACGGCTTGCACATCC-CGTCTCTCTGGCCGGCGTAGTGACCG
650 CCCACCTACCACCCTATCGATCCACGGCTTGCACA-CCTCACCTCTCTGGCCGGCGTA---A-CG
12236842 CCTGCC
710 CCTGCC
* * * *
12236848 CGCCCG-CTCGTTCGTTTTATCGGTTGGCTTAGTCATACGGAGTTCATTCCCAGTCTAAGATTGG
1 CGCCCGTC-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGG
12236912 ACCAGACCGAGGGTTACGACAGCACATGTTGGGCTCGAACATGTGCTGGTGCCGCATTTTTCTTC
65 ACCAGACCGAGGGTTACGACAGCACATGTTGGGCTCGAACATGTGCTGGTGCCGCATTTTTCTTC
* *
12236977 GCTAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
130 ACTAGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * *
12237042 GGGGGGGCC-GGGGTGGTGTGCGCATATCATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTG
195 GGGGGGGCCAGGGG-GGTGTGCGCACATCATGTGCGATAGGTGCTAGTACTTGCCCCTTATATTG
*
12237106 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
259 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAA
** *
12237171 GTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
324 GTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGCAACACTTTTTTCAAATGGTCAAAAAATC
* * *
12237236 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAACATGCCAAAAAAAATACATGCATCACGTC
389 TTGAACACTTCGAGTTTTTAGCTGAACTTTTTTGAACATGCCAAAAAAAATACAAGCATCACGTC
* * ** * * **
12237301 TACCAAGTTTGGAGCTGAAACTCCCTCCAAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTT
454 TACCAAGCTCGGAGCCAAAACTCCCTCCAAAAAAATTTAAAAAAATCCCAAACCATAAAAAGTTT
*
12237366 CAAAAATCGTGAAAAATAGAAAACGCGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGA
519 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGA
12237431 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGAGGCA-AAACTATGAAGATATACCTA
584 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGAGGCAGAAA-TATGAAGATATACCTA
* ** *
12237495 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCACCTCACCTCTCTGTTCGGCGTAATGCCT
648 AACCCACCTACCACCCTATCGATCCACGGCTTGCACACCTCACCTCTCTGGCCGGCGTAACGCCT
12237560 GCC
713 GCC
*
12237563 CGCCCGTCCGCTCGTTTCATGGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGG
1 CGCCCGTCCGCTCGTTTCAT-CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGG
* *
12237628 ATCGGACCGAGGGTT
65 ACCAGACCGAGGGTT
12237643 GTGGCAGCAG
Statistics
Matches: 708, Mismatches: 80, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
715 23 0.03
716 56 0.08
718 9 0.01
719 620 0.88
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (715 bp):
CGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGA
CCAGACCGAGGGTTACGACAGCACATGTTGGGCTCGAACATGTGCTGGTGCCGCATTTTTCTTCA
CTAGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
GGGGGGCCAGGGGGGTGTGCGCACATCATGTGCGATAGGTGCTAGTACTTGCCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAAGT
TTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGCAACACTTTTTTCAAATGGTCAAAAAATCTT
GAACACTTCGAGTTTTTAGCTGAACTTTTTTGAACATGCCAAAAAAAATACAAGCATCACGTCTA
CCAAGCTCGGAGCCAAAACTCCCTCCAAAAAAATTTAAAAAAATCCCAAACCATAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGAGGCAGAAATATGAAGATATACCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCACACCTCACCTCTCTGGCCGGCGTAACGCCTGCC
Found at i:12237785 original size:26 final size:26
Alignment explanation
Indices: 12237755--12237805 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12237745 GTTGACTTAG
* *
12237755 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12237781 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
12237806 TGATCCGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12239283 original size:26 final size:26
Alignment explanation
Indices: 12239247--12239306 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
12239237 GTTGGCTTAG
*
12239247 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12239273 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12239299 GCATACAG
1 GCATACAG
12239307 GCTCGAGCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12240113 original size:323 final size:323
Alignment explanation
Indices: 12239520--12240168 Score: 1050
Period size: 323 Copynumber: 2.0 Consensus size: 323
12239510 AAAGAGCATT
12239520 TGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
1 TGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
* * *
12239585 AGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGCATTTTTTTGTGCATGCCAACAAAAATA
66 AGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
*
12239650 CAAGGATCACGTCTACAAAATTTGGAGCTGAAACTCCTTCCAAAAAAAGTTTAAAAAATCCTGAA
131 CAAGGATCACGTCTACAAAATTTGGAGCTCAAACTCCTTCCAAAAAAAGTTTAAAAAATCCTGAA
** *
12239715 CCACAAAAAGTTTTGAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
196 CCACAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTG
* *
12239780 AAGGCTTAAGGGACCATTGTATGAATTTACAAATCATAAAAATGACATTGGCACGTAGAAATA
261 AAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGACATTGGCACGCAGAAATA
* **
12239843 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAA
1 TGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
12239908 TA-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
66 -AGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
* * * * *
12239972 ACAAGGATCACGTCTACAAAGTTTGGGGC-CAAATCTCCTTCCAAAAAAATTTTACAAAATCTTG
130 ACAAGGATCACGTCTACAAAATTTGGAGCTCAAA-CTCCTTCCAAAAAAAGTTTAAAAAATCCTG
** *
12240036 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACG
194 AACCACAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACG
* * * *
12240101 TGAAGTCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
259 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGACATTGGCACGCAGAAATA
12240166 TGA
1 TGA
12240169 AGATGTGCCT
Statistics
Matches: 300, Mismatches: 24, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
322 3 0.01
323 296 0.99
324 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (323 bp):
TGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
AGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
CAAGGATCACGTCTACAAAATTTGGAGCTCAAACTCCTTCCAAAAAAAGTTTAAAAAATCCTGAA
CCACAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGACATTGGCACGCAGAAATA
Found at i:12240480 original size:26 final size:26
Alignment explanation
Indices: 12240443--12240495 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12240433 GTTGACTTAG
12240443 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12240469 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12240495 G
1 G
12240496 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12241374 original size:26 final size:26
Alignment explanation
Indices: 12241345--12241398 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
12241335 TGGGTTGACT
* *
12241345 TAGGCATACGGCGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCAATCCCAGTC
12241371 TAGGCATACGGAGTTCAATCCCAGTC
1 TAGGCATACGGAGTTCAATCCCAGTC
12241397 TA
1 TA
12241399 AGATTGGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCAATCCCAGTC
Found at i:12242283 original size:26 final size:26
Alignment explanation
Indices: 12242247--12242299 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12242237 GTTGACTTAG
* *
12242247 GCATACGGAGTTCATTTCCACTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
*
12242273 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
12242299 G
1 G
12242300 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCACTCTAA
Found at i:12242726 original size:897 final size:895
Alignment explanation
Indices: 12239843--12244690 Score: 6340
Period size: 897 Copynumber: 5.4 Consensus size: 895
12239833 CGTAGAAATA
*
12239843 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAA
1 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
12239908 TAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
66 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
12239973 CAAGGATCACGTCTACAAAGTTTGGGGCCAAATCTCCTTCCAAAAAAATTTTACAAAATCTTGAA
131 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAA
* *
12240038 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTG
196 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
12240103 AAGTCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
261 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
12240168 AAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCCCATCCCGCCTCTCTGGCC
326 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
12240233 -AGCGTAGTGCCCGCCCGCTCGCCTGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
391 GA-CGTAGTGCCCG-CC-CTC-CC-GCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * *
12240297 ATTCTCAGTCTAAGATCAGATCGAAATGAGGGATGT-GGTAGCAGGATCGGTA-CAATACAGAGG
451 ATTCCCAGTCTAAGATCAGA-CCAAATGAGGG-TTTCGGTAGCAGGATCGGTAGC-ACACAGAGG
* * * * * * * * *
12240360 GGGACCCGCCCAATCCCCAACTTGCGCATCCCTCCTCTCTGGTCAGCTGAGCGCCCGCAC-GTTT
513 GGGACCCGACCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC-CTGCTC
*
12240424 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
576 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* *
12240489 GTCTAAGATCGGATCAGACCGAGGGCTGCGGCAGCACATGCTGGGTTCGAGCATGTGCTGGTGCC
641 GTCTAAGATCGGACCAGACCGAGGGCTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCC
* * *
12240554 GCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGATCCTGACCTGC-GACATTGG
705 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCAG-CATTGG
** * * * *
12240618 GGTTCCGGTGATCGGAGGGGCCGGGGGGGTGTGCTCACATGATTTGTGATGGGTGCTGTTACTTG
769 GGTTCCGACGATCGG-GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
12240683 CCCCTTATATTGGCCCCCTATCCCTCATTAAACCTTGAGAACTCACACCCACTTAAAGTGCATT
832 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
* *
12240747 TGAGATTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
1 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
12240812 TGGTCACAAAATCTTGTACACTTCTAGTGTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAT
66 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAAT
**
12240877 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCCA
130 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGA
*** *
12240942 ACCGTAAAAAGTTTTGGAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGT
195 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
12241007 GAAGGCTTAAAGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
260 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* *
12241072 GAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCCCGTCTCTCTGGC
325 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* *
12241137 CGGCGTAGTACCCGCCCGCTCGCCCGCCCGT-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
390 CGACGTAGTGCCCG-CC-CT--CCCGCCC-TCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
12241201 CGTTCCCAATCTAAGATCAGACCAGAATGAGGGATGCCGTAGCAGGATCGGTAGCACGCAGAGGG
450 CATTCCCAGTCTAAGATCAGACCA-AATGAGGGTTTCGGTAGCAGGATCGGTAGCACACAGAGGG
* * * *
12241266 GGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGTTGAGCACCCGCATGCTCGT
514 GGACCCGACCGATCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCCTGCTCGT
* * *
12241331 TTCGTGGGTTGACTTAGGCATACGGCGTTCATTCCCAGTCTAGGCATACGGAGTTCAATCCCAGT
578 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * *
12241396 CTAAGATTGGATCAAACCGAGGGCTGCGGCAGCACATGCTGGGTTCGAGCATGTGCTGGTGCCGC
643 CTAAGATCGGACCAGACCGAGGGCTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCGC
* * * *
12241461 A-TTTTCTTCGTCGGGGCACCATCACCGGACCCATCGCCAGAGATCCTGACCGGCAGCATTGGGG
707 ATTTTTCTTCGTCGGGGCACCATCGCCGGA-GCATCGCCGGAGAACCTGACCGGCAGCATTGGGG
* * * *
12241525 TTTCGATGATCGGAGGGGCCGGGGGGTGTGCTCACATGATGTGCAATGGGTGCTGGTACTTGGCC
771 TTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
12241590 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATT
835 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
12241651 TGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGTGGACAATTTTTTCAAA
1 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * *
12241716 CGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATATTTTTGTGCAAGCCAACAAAATTA
66 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* **
12241781 CATGGATCACGTCTAGAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAA
131 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAA
* * * *
12241846 CCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAATGAGCCGTCTTGCCAAGAAACTTCACGTG
196 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
12241911 AAGGCTTAAGGGACCATTGTATGAATTTACACA-CCATAAAAATGGCATTGGTAGGCAGAAATAT
261 AAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCACGCAGAAATAT
** * * *
12241975 GAAGATGTGTTTAAACCCACCTACCAGCGTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGC
325 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* ** * *
12242040 CGACGTAGTGCCTGCCCTCCCGTTCTCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTC
390 CGACGTAGTGCCCGCCCTCCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * ** *
12242105 CCAGCCTAACATCAGATCAAACCGAGGGTTTCGGCAACAGGATCGACAGCACACTGAGGGGGACC
455 CCAGTCTAAGATCAGACCAAA-TGAGGGTTTCGGTAGCAGGATCGGTAGCACACAGAGGGGGACC
** * * * * *
12242170 CGATTGATCCCCAGCTTACGGATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCCTGCTCGTTTTGT
519 CGACCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCCTGCTCGTTTCGT
* * *
12242235 GGGTTGACTTAGGCATACGGAGTTCATTTCCACTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
583 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * * *
12242300 ATCAGACCGGACCAAGGGTTGCGGTAGCCCATGCTAGGCTCGGTCATGTGTTGGTGCTGCATTTT
648 ATCGGACCAGACCGAGGGCTGCGGCAGCACATGCTGGGCTCGG-CATGTGCTGGTGCCGCATTTT
* * ** ** * *
12242365 TCTTCATCGGGGCACCATCGTCGGA-CATCAACAAAGAACCTGACCGACAGCATTGGGGTT-CTA
712 TCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGA
* *
12242428 GCGATCGGGGGCGCCGGGGGG-GTGCACACATGATGCGCGATGGGTGCTGGTACTTGGCCCTTAT
777 -CGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
12242492 ATTAGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
840 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
* *
12242548 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAA
1 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
12242613 TGGTCACAAAATCTTGTACACTTCAAGTGTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATA
66 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
12242678 GAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAATCCCGAA
131 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAA
** * * * * *
12242743 CCCCAAAAAGCTTCAAAAATCGTGAAAAATACAAAACAAGTCGTCTTGCCATGAAACTTTACGTG
196 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
12242808 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
261 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
** * * * * *
12242873 AAGATGTGAATAAACCCGCCTACCACCCTATCGATCCACGGCCTGCGCATCTCATCTCTTTGGCC
326 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * **
12242938 GGCGTTA-TGCCAG----CCCGCCCTCTTGTTTCATCGGTTGGCACAGGCATACGGAGTTCATTC
391 GACG-TAGTGCCCGCCCTCCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * ** * *
12242998 CCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGTAGGATCGGTAGCATGCAAAAGGGGACC
455 CCAGTCTAAGATCAGACCAAAT-GAGGGTTTCGGTAGCAGGATCGGTAGCACACAGAGGGGGACC
* * * * * * * *
12243063 CG-CGTGATCCCCGACTTACGCATCCCACCCTTCTGGCCGGCTAAGCGCCCACATGCTCATTTCG
519 CGAC-CGATCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCCTGCTCGTTTCG
*
12243127 TGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
582 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12243192 GATCGGACCACACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATCTGCTGGTGCCACATTA
647 GATCGGACCAGACCGAGGGCTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTT
* * * *
12243257 TTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCG
711 TTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCG
*
12243322 ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATA
776 ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
**
12243387 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
841 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
*
12243442 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAA
1 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
12243507 TGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTG-ATTTTTTTTTGCATGCCAACAAAAATA
66 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
12243571 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCTGAA
131 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAA
* * * *
12243636 CCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTG
196 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * ** ** *
12243701 AAAGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATCTCATCAGCATGCAGAAATATG
261 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
12243766 AAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCACATCTCTCTGGCC
326 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
12243831 GACATAGTGCCCACCCGCCCACCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
391 GACGTAGTGCCCGCCCTCCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * **
12243896 CAGTCTAAGATCAGACCGAATTGAGGGTTGT-GGCAACAGGATTGGTAGCACGTAGAGGGGGACC
456 CAGTCTAAGATCAGACC-AAATGAGGGTT-TCGGTAGCAGGATCGGTAGCACACAGAGGGGGACC
* * * * *
12243960 CGACCGATCCCCGGCTTGTGAATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCAC-GCTCATTTCA
519 CGACCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC-CTGCTCGTTTCG
* * * *
12244024 TGGGTTGACTTAGGGATACAGTGTTCATTCCCAG--T----AT---TAG---A-T--C-G----A
582 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *
12244069 -A-CGGACC--A---AGGGATGCGACAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTT
647 GATCGGACCAGACCGAGGGCTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTT
* * * * **
12244127 TTCTTCGTCGGGGCACGATCGCTGGAGCATCACCGGAGAACC-GATCGGTGGCATTGGGGTTCCG
711 TTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCG
* *
12244191 ACGATCGGGGGGGGCCACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTT
776 ACGATC--GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
12244256 ATATTGGACCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
838 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
* *
12244314 TGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAA
1 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
12244379 TAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTGTTTTTATCCATGCCGACAAAAAT
66 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAAT
* *
12244443 ACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTT-TAGAAAAAATTTTAAAAAATCCTG
130 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA-AAAAAATTTTAAAAAATCCTG
* *
12244507 AACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
194 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
12244572 TGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
259 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * * *
12244637 TGAAGATGTGCCTAAACACACCTACCACTCGACCGATCCCCGGCTTGCGCATCC
324 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
12244691 TACCCCTCTG
Statistics
Matches: 3477, Mismatches: 423, Indels: 119
0.87 0.11 0.03
Matches are distributed among these distances:
869 25 0.01
870 81 0.02
871 8 0.00
872 199 0.06
873 249 0.07
875 6 0.00
876 1 0.00
877 1 0.00
881 1 0.00
882 1 0.00
884 1 0.00
885 1 0.00
888 2 0.00
891 2 0.00
892 3 0.00
893 541 0.16
894 226 0.06
895 3 0.00
896 1 0.00
897 615 0.18
898 54 0.02
899 245 0.07
900 26 0.01
901 2 0.00
902 2 0.00
903 252 0.07
904 351 0.10
905 573 0.16
906 4 0.00
907 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (895 bp):
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAA
CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GACGTAGTGCCCGCCCTCCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAAATGAGGGTTTCGGTAGCAGGATCGGTAGCACACAGAGGGGGACCCG
ACCGATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCCTGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCAGACCGAGGGCTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGCATTTTTCTT
CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGAT
CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
Found at i:12243176 original size:26 final size:26
Alignment explanation
Indices: 12243140--12243192 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12243130 GTTGACTTTG
12243140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12243166 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12243192 G
1 G
12243193 ATCGGACCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12244773 original size:26 final size:26
Alignment explanation
Indices: 12244743--12244795 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12244733 GTTGACTTAG
*
12244743 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
* *
12244769 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTACCAGTCTAA
12244795 G
1 G
12244796 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:12245671 original size:26 final size:27
Alignment explanation
Indices: 12245634--12245688 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
12245624 CGTGGGTTCA
*
12245634 CTTAGGCATACGGAGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATTACCAGT
12245661 CTTA-GCATACGGAGTTCATTACCAGT
1 CTTAGGCATACGGAGTTCATTACCAGT
12245687 CT
1 CT
12245689 AAGATCGGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATTACCAGT
Found at i:12246514 original size:26 final size:26
Alignment explanation
Indices: 12246478--12246530 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12246468 GTTGACTTAG
12246478 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12246504 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12246530 G
1 G
12246531 ATTGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12248572 original size:848 final size:855
Alignment explanation
Indices: 12246724--12252438 Score: 5894
Period size: 848 Copynumber: 6.6 Consensus size: 855
12246714 CTTGGCCGTT
*
12246724 TTAAAGTG-ATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTG
1 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTG
* * *
12246788 TAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAACGATCACGTCTACCACGTTTGGGGCCAA
66 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** *
12246853 AACTCCTTCTGAAAAAATTTT-AAAAATCCTGAATTGTAAAAAGTTTCAAAAATCATGAAAAATA
131 AACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* * *
12246917 GAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTAGA
196 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
12246982 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
261 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
12247047 CAATCCACGACTTGCGCATCCCGTCTCTCTGATCGACGTAGTGCCCGTCCG--C-CC-GCTCGTT
326 CGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCCCGCCTGCTCGTT
* * * * * ***
12247108 TCATCAGTTGGCTTAGGCGTACGAAGTTCATTCCCAGTCTAACATCAGACCGAAATAAGGGTTGC
391 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * * *
12247173 -GATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTTGATCTGGTCGATTGAGCGCCCGCACG
456 AG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCTGGTCGACTGAACGCCCGCACG
12247237 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG-GA-C-CGGA
520 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGATCACGGA
* * * * * * *
12247297 -C-CGAGGGTTGTGGTAGCACATACTAGGCTCGGGCATGTGATGGTGTCACATTTTTCTTCATCG
585 CCACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCG
* *
12247360 GGACACTATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGAGG
650 GG-CACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCG-GG
* *
12247425 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTCCTGGTACTTGGCCCCTATATTGGCCCC
713 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
12247490 CTATCCCTCATCAAACCTGGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
778 CTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
12247555 TTGCCAGTAGCCA
843 TTGCCAGTAGCCA
*
12247568 TTAAAGTG-ATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTG
1 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTG
* * *
12247632 TAGCTGAAATTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAA
66 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
12247697 AACTCCTTCTGAAAAAATTTT-AAAAATCCTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATA
131 AACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* *
12247761 GAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGA
196 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
12247826 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
261 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
12247891 CGATCCACGGCTTGCGCATCCCGTCTCTCTGATCGACGTAGTACCCGCCCGCCCGCCTGCTCGTT
326 CGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCCCGCCTGCTCGTT
* * * * *
12247956 TCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACACCAGACCGGACTGAGGGTTGT
391 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * *
12248021 GGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCTGGTCGATTGAACGCCCGCACGC
456 AGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCTGGTCGACTGAACGCCCGCACGC
*
12248086 TCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-AGA-C-CGGA-
521 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGATCACGGAC
* * *
12248145 C-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGATGGTGTCATATTTTTCTTCACCGG
586 CACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGG
*
12248209 GACACTATCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGAGGG
651 G-CACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCG-GGG
* * * * * * *
12248274 AGCCGGGGGGGTGTGTGCCCATGATGTGCGATGGGTGCTGGTAGTTGGCCCCTATATTTGCCTCC
714 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
12248339 TAT-CGTCATCAAACCTGGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGT
779 TATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGT
12248403 TGCCAGTAGCCA
844 TGCCAGTAGCCA
* **
12248415 TTAAAGTG-ATGAAATGCAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTG
1 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTG
* * *
12248479 TAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTGCCACGTTTGGGGCCAA
66 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
12248544 AACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCCTAAAAGGTTTCAAAAATCGTGAAAAATA
131 AACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* * * *
12248609 GAACACGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTATGGGACCATTGTATGAATTTACA
196 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
12248674 AGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTAT
261 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
12248739 CGATCCACGACTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCT
326 CGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGACGTAGT----GCCCGCCCGCCCGCCTGCT
* * * * *
12248804 CGTTTCATCAGTTGGCTTAGGCATACAGAGTTGATTCCCAGTGTAAGAT-AGGATCGGACCGAGG
387 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGG
* * *
12248868 GTTGCGGCAGCAGGATCGGCAGCACGTAGAGAGGGACCCATCCAATCCCCGACTTACGCATCCCA
451 GTTGCAGCAGCAGGATCGGCAGCACGCAGAG-GGG--------GA--CCCGA--T-CG------A
* * * *
12248933 CCTCTCTGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
496 ----TCTGGTCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
12248998 TCCCAGTCTAAGCATACGGAGTCCATTCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGC
557 TCCCAGTCTAAGCATAC-GAG---A-T-CA--C---G----GACC--A-CGAGGGTTGCGGCAGC
* * * * *
12249063 ACATGCTGGGCTCGAGCTTGTGCTGGTGCCGCATTTTCCTACACCGAGGCACCATCACCGGAGCA
604 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCG-GGCACCATCACCGGAGCA
* * * * * *
12249128 TTGCCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGTCGGGAGGGTGTGCGCA
668 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCA
12249193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
733 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
12249258 AGAACTCACAC-CCCTTTAAAGAGCATTTGAGATTTTACAGGTTT-TCTGCCAGCAGTCA
798 AGAACTCACACTCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGT-TGCCAGTAGCCA
* * *
12249316 TTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
1 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTG
* *
12249381 TAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAAGGATCATGTCTACCAAGTTTGGGGCCAA
66 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
12249446 AACTCCTATC-GAAAAATTTTTAAAAAATCCTGAACCGTAAAAAGTTT-AAAAATTGTGAAAAAT
131 AACTCCT-TCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* * * *
12249509 AGAAAACGA---GTATTACCACGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTAC
195 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
12249571 AAGCCATAAAAATGGCATTGGAATG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
260 AAGCCATAAAAATGGCATTGGCATGCAA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
12249635 ATCGATCGACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGTCC-GCTC
324 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCCCG-CCTGCTC
* ** *
12249699 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGT
388 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* * * *
12249764 TGCAACAGCAAGATCAGCAGCACGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCC
453 TGCAGCAGCAGGATCGGCAGCACGCAG-A--GG----GG--GA--CCC-G-AT-CG-A-------
* * * * *
12249829 CTCTGGCCGACTGAGCGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCC
496 -TCTGGTCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
12249894 TAGTCTAGGCATACGGAGTTCATTACCAGTCTTTGATCGGATCAGATCGAGGGTTGCGGCAACAC
560 CAGTCTAAGCATAC-GAG---------A-TC----A-CGGA-C-CA-CGAGGGTTGCGGCAGCAC
* * * **
12249959 ATACTGGGCTTGGGCATGTGCTGCTGCCGA-ATTTTTCTTCGTCGAGG------CA-C----CAT
606 ATGCTGGGCTCGGGCATGTGCTGGTGCC-ACATTTTTCTTCACCG-GGCACCATCACCGGAGCAT
* * *
12250012 CGCCGGATAACCTGACCGACGGCATTGGGGTTCCGACGATCGGCGGGGCC--GGGGGTGTGTGCA
669 CGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGG-GGGGCCGGGGGGGTGTGCGCA
* *
12250075 CATGATGT-CGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT---TCATCAATGCCTC
733 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA-ACCTC
*
12250136 G-GAAC-CACA--CCCTT-AAGAGCA-ATGAG--TTTACTA-GTTT-TCTGCCAGTAGCCA
797 GAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGT-TGCCAGTAGCCA
* * *
12250187 TTAAAG-GTCTG-AATGGGAACACTTTTTTCAAATGGCCAC-AAA-CTTGTACACTTCAAG-TT-
1 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTG
*
12250246 TAGCT-AATTTTTTTGTGCATGCCAA-AAAAATAC-AGGATCATGTCTACCAAGTTT--GG-C-A
66 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * **
12250304 AA-TTCTTC-G----AA-TTT-AAAAAT-CTCGAACCG----CA-TTT-TTAAATC--G-AAAAT
131 AACTCCTTCTGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* * * * ** *
12250351 AG-AAATGA-TCATC-TGGCATGTAACTTCA--T--ATTCTTAA-TGACCATTGTA-G-A-TTAC
195 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
12250405 TAG-GATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
260 AAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
12250469 TCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCTACCCACCCG-CCGCC-GCC
325 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGACGTAGTG---CCCGCCCGCCCGCCTG--
* * * *
12250532 CTCGATTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCATACCGGACCGAT
385 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * ** * *
12250597 GGTTGTAGTAGTAGGATCGGTATTACGTAGAGGAGGACCTGGTCGATCCCCGGCTTGCGCATCCT
450 GGTTGCAGCAGCAGGATCGGCAGCACG--CA-GAGG----GG--GA--CCC-G-AT-CG-AT-CT
* ** * * *
12250662 GCCCCTCTGGCCAACTGAGTGCCCGCATGTTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
499 G---GTC--G---ACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
12250727 TTCCCTGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCGGACCGAGGGTTGCAGCA
556 TTCCCAGTCTAAGCATAC-GAG---A-T--C-A-C---G---G-A-C-CA-CGAGGGTTGCGGCA
* * * **
12250792 CCATATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTTCCATCACCGGAG
602 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACC-GGGCACCATCACCGGAG
* * * * * *
12250857 CATCGTCGGAGAACCTGACCGGCGGCTTTGGGGTACCGGTGATCGGGGGGCGGGGGGGGTGTGCG
666 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCG
12250922 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
731 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
12250987 CGAGAACTCACACCCCCTTAAA-AGGCATTTGATATTTTACAGGTTTGCTGCCAGTAG-CA
796 CGAGAACTCACACTCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCA
* * * * *
12251046 TTTATAGTGTCTAAAATGAGGACACTTTTTTCAAATGGTTACAAAGTCTTGTACACTTCGAGTTT
1 -TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * * *
12251111 TTGGCTGAATTTTTTTATGCGTCCCAACAAAAATACAAGGATCACTTCTACC-AGTTTGGTGCC-
65 GTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * **
12251174 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAACAGGTTTCAAAAATTTTGAAAAAT
130 AAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* *
12251239 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAA
195 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** * * * *
12251304 AAGCCATAAAAATGGCATTTTCACGCAAAAATATGAACATGTGCCTAAACCCACCAACCACCTTA
260 AAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *** * * * *
12251369 TCGATCCACAGCTTGCGTA-CCCGTCTCTCTGGTTGGCATAGTGCCAGCTCGCCCG--T--TCGT
325 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCCCGCCTGCTCGT
* * *
12251429 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGCTGGACCGAGGGTTG
390 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* ** * * *
12251494 CTTGCCTCAAGATCGGCAGCAAGCAGAAGGGGACCCGACTGATCCCCGACTTGCACATGCCGCCC
455 C-AGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CC--C-GAT---CGA--T---C-TG--G---
* *
12251559 CTCTGGCCGGCTGAACGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
501 ---T---CGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
12251624 CAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCCGATCGAGGGTTACGGTAACAC
560 CAGTCTAAGCATAC-GAG---A-T--CA--C---G----GA-CC-A-CGAGGGTTGCGGCAGCAC
* * *
12251689 ATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTC-CTCGGGGCACCATCACTGGAGCAT
606 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCAC-C-GGGCACCATCACCGGAGCAT
* * * * * *
12251753 TGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATTGGGGGGCC-AGGGGGTGTGCACAC
669 CGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCAC
*
12251817 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
734 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
12251882 GAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTGGCCA
799 GAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCA
* * *
12251939 TTAAAGTGTCTGAAATGTGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
1 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTG
*
12252003 TAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
66 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** ** *
12252068 AACTCCTTCTGAAAAAATTAAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
131 AACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* * * *
12252133 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCTTTGTATGAATTTAAA
196 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** ** *
12252198 AGTGATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
261 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
12252263 CGATCCACGGCTTGCGCATCCCGTCTCTCT-AGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGC
326 CGATCCACGGCTTGCGCATCCCGTCTCTCTGA-CCGACGTAGTGCCCGCCCGCCCG-CC-T--GC
* * * * * *
12252327 TCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAACAGATCGAGG
386 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * * *
12252392 GTTACAGCAGCAGGATCTGCAACACGCAGAGGGGGACCCGACCGATC
451 GTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC
12252439 CTCGGCTTGT
Statistics
Matches: 4169, Mismatches: 461, Indels: 437
0.82 0.09 0.09
Matches are distributed among these distances:
828 1 0.00
829 3 0.00
830 3 0.00
831 3 0.00
832 1 0.00
833 97 0.02
834 11 0.00
835 4 0.00
836 109 0.03
837 133 0.03
838 8 0.00
839 1 0.00
840 1 0.00
841 5 0.00
842 18 0.00
843 4 0.00
844 366 0.09
845 7 0.00
846 2 0.00
847 223 0.05
848 600 0.14
849 23 0.01
850 51 0.01
851 4 0.00
852 106 0.03
853 14 0.00
854 4 0.00
856 9 0.00
857 8 0.00
858 6 0.00
859 4 0.00
860 25 0.01
861 5 0.00
862 45 0.01
863 14 0.00
864 34 0.01
865 8 0.00
866 8 0.00
867 30 0.01
868 16 0.00
869 38 0.01
870 6 0.00
871 31 0.01
872 7 0.00
873 5 0.00
874 7 0.00
875 2 0.00
876 70 0.02
877 8 0.00
878 15 0.00
879 17 0.00
880 3 0.00
881 39 0.01
882 19 0.00
883 46 0.01
884 11 0.00
885 7 0.00
886 5 0.00
887 3 0.00
888 9 0.00
889 13 0.00
890 9 0.00
891 96 0.02
892 222 0.05
893 475 0.11
894 193 0.05
895 12 0.00
896 19 0.00
897 9 0.00
898 149 0.04
899 29 0.01
900 139 0.03
901 225 0.05
902 215 0.05
903 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (855 bp):
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTG
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCCCGCCTGCTCGTT
TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
AGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCTGGTCGACTGAACGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGATCACGGAC
CACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGG
GCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGG
CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
CCAGTAGCCA
Found at i:12249034 original size:25 final size:26
Alignment explanation
Indices: 12248983--12249034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12248973 GTTGACTTAG
*
12248983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
12249009 GCATACGGAGTCCATT-CCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
12249034 G
1 G
12249035 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:12249924 original size:26 final size:26
Alignment explanation
Indices: 12249873--12249925 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12249863 TGGGTTGACT
*
12249873 TAGGCATACGGAGTTTATTCCTAGTC
1 TAGGCATACGGAGTTCATTCCTAGTC
12249899 TAGGCATACGGAGTTCATTACC-AGTC
1 TAGGCATACGGAGTTCATT-CCTAGTC
12249925 T
1 T
12249926 TTGATCGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCTAGTC
Found at i:12250007 original size:894 final size:892
Alignment explanation
Indices: 12248107--12260622 Score: 8305
Period size: 904 Copynumber: 13.8 Consensus size: 892
12248097 GTTGACTTAG
* * *
12248107 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
* * *
12248172 CTCGGGCATGTGATGGTGTC-ATATTTTTCTTCACCG-GGACACTATCACCGGAGCATCGCCGGA
66 CTCGGGCATGTGCTGGTGCCGA-ATTTTTCTTCACCGAGG-CACCATCACCGGAGCATCGCCGGA
* * * *
12248235 GAACCTGACCGACGGCATTGGGGTTCCGATGATCGAGGGAGCCGGGGGGGTGTGTGCCCATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGATGATCG-GGG-GGC-GGGGGGTGTGCGCACATGATG
* * * * * *
12248300 TGCGATGGGTGCTGGTAGTTGGCCCCTATATTTGCCTCCTAT-CGTCATCAAACCTGGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
12248364 ACACTCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGT-TGCCAGTAGCCATTAAAGTG-ATGA
256 ACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTT-TCTGCCAGTAGCCATTAAAGTGTCTGA
** *
12248427 AATGCAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
12248492 TTGTGCATGCTAACAAAAATACAAGGATCACGTCTGCCACGTTTGGGGCCAAAACTCCTTCTGAA
384 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAA
* * * *
12248557 AAAATTTTAAAAAATCCCGAACCCTAAAAGGTTTCAAAAATCGTGAAAAATAGAACACGAGTCAT
448 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCA-
* *
12248622 CTTGCCATGAAACTTCACGTAAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATG
512 -TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12248687 GTATTGGCATGCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGACTT
576 GCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12248752 GCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTT
641 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTT
* * * * *
12248817 GGCTTAGGCATACAGAGTTGATTCCCAGTGTAAGATAGGATCGGACCGAGGGTTGCGGCAGCAGG
702 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCAGCAGCAGG
* * * * * *
12248882 ATCGGCAGCACGTAG-AGAGGGACCC-ATCCAATCCCCGACTTACGCATCCCACCTCTCTGGTCG
767 ATCGGCAGCACGCAGAAG-GGGACCCGA-CCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCG
* * *
12248945 GCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
829 GCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12249009 GCATACGGAGTCCATT-CCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
* * * * * *
12249073 CTCGAGCTTGTGCTGGTGCCGCATTTTCCTACACCGAGGCACCATCACCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGAGA
* *
12249138 ACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGTCGGGAGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGG-CGGG-GGGTGTGCGCACATGATGTGC
12249203 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12249268 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGCAGTCATTAAAGTGTCTGAAATG
259 CCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12249333 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
12249398 GCATGCCAACAAAATTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTATCGAAAAAT
388 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCT-TCGAAAAAA
* *
12249463 TTTTAAAAAATCCTGAACCGTAAAAAGTTT-AAAAATTGTGAAAAATAGAAAACGAGT-ATTACC
452 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATTGCC
* *
12249526 ACGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
12249591 GAATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTACGCAT
582 GCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
12249656 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCA
647 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
12249721 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAACAGCAAGATCAGCAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCA
* * *
12249786 CGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCCGACTGAGCGCCTGC
777 CGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
12249851 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCTAGTCTAG
842 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
12249902 GCATACGGAGTTCATTACCAGTCTTTGATCGGATCAGATCGAGGGTTGCGGCAACACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
* * ** *
12249967 CTTGGGCATGTGCTGCTGCCGAATTTTTCTTCGTCGAGG------CA-C----CATCGCCGGATA
66 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGAGA
* * * *
12250021 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGCGGGGCCGGGGGTGTGTGCACATGATGT-CG
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGG-GGGGCGGGGGGTGTGCGCACATGATGTGCG
* *
12250085 TTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT---TCATCAATGCCTCG-GAAC-CACA
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA-ACCTCGAGAACTCACA
*
12250145 -CCCTT-AAGAGCA-ATGAG--TTTACTA-GTTTTCTGCCAGTAGCCATTAAAG-GTCTG-AATG
259 CCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12250202 GGAACACTTTTTTCAAATGGCCAC-AAA-CTTGTACACTTCAAG--TTTAGCT-AATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
12250262 GCATGCCAA-AAAAATAC-AGGATCATGTCTACCAAGTTT--GG-C-AAA-TTCTTCG----AA-
388 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAT
* * ** * * *
12250315 TTT-AAAAATCTCGAACCG----CA-TTT-TTAAA-T-CG-AAAATAG-AAATGA-TCATCTGGC
453 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCAT-TGCC
* ** * * *
12250368 ATGTAACTTCA--T--ATTCTTAA-TGACCATTGTA-G-A-TTACTAG-GATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
12250424 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
582 GCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
12250489 CCCATCTCTCTGGCCGGCGTAGTGCTACCCACCCG-CCG-CCGCCCTCGATTCATCGGTTGGCTT
647 CCCGTCTCTCTGGCCGGCGTAGTG---CCCGCCCGCCCGTCCG--CTCGTTTCGTCGGTTGGCTT
* * * * * *
12250552 AGGCATACGGAGTTCATTCCCAATCTAAGATCA-TACCGGACCGATGGTTGTAGTAGTAGGATCG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTGCAGCAGCAGGATCG
* ** * * ** * **
12250616 GTATTACGTAG-AGGAGGACCTGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAACTGA
771 GCAGCACGCAGAAGG-GGACCCGACCGATCCCCGGCTTGCGCATCC-CCCCCTCTGGCCGGCTGA
* * * *
12250680 GTGCCCGCATGTTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
834 GCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
12250739 GCATACGGAGTTCATTCCCAATCTAAGATC-GAATCGGACCGAGGGTTGCAGCACCATATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCGGCAACACATGCTGG
* ** *
12250803 GCTCGGGCATGTGCTGGTGCC-ACATTTTTCTTCACCGGGGTTCCATCACCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCGA-ATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGA
* * *
12250867 GAACCTGACCGGCGGCTTTGGGGTACCGGTGATCGGGGGGCGGGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGC--GGGGGGTGTGCGCACATGATGT
12250932 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
12250997 CACCCCCTTAAA-AGGCATTTGATATTTTACAGGTTTGCTGCCAGTAG-CATTTATAGTGTCTAA
257 CA-CCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCA-TTAAAGTGTCTGA
* * * *
12251060 AATGAGGACACTTTTTTCAAATGGTTACAAAGTCTTGTACACTTCGAGTTTTTGGCTGAATTTTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
12251125 TTATGCGTCCCAACAAAAATACAAGGATCACT-TCTACC-AGTTTGGTGCC-AAACTCCTTCCGA
384 TTGTGCATGCCAACAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGA
* * * *
12251187 AAAAATTTTAAAAAATCCCGAACCGTAACAGGTTTCAAAAATTTTGAAAAATAGAAAATGAGTCG
447 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTC-
* *
12251252 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
511 -ATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * * * *
12251317 GGCATTTTCACGCAA-AAATATGAACATGTGCCTAAACCCACCAACCACCTTATCGATCCACAGC
575 GGCATTGGCATG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * *
12251381 TTGCGTA-CCCGTCTCTCTGGTTGGCATAGTGCCAGCTCGCCCGT----TCGTTTCGTCGGTTGG
639 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGG
* * ** *
12251441 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGG-CTGGACCGAGGGTTGCTTGCCTCAAG
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTGC-AGCAGCAGG
* * * * *
12251505 ATCGGCAGCAAGCAGAAGGGGACCCGACTGATCCCCGACTTGCACATGCCGCCCCTCTGGCCGGC
767 ATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCCCCCCTCTGGCCGGC
*
12251570 TGAACGCCCGC-TCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 TGAGCGCCCGCAT-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12251632 GCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCCGATCGAGGGTTACGGTAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
* * * * * *
12251697 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTC-CTCGGGGCACCATCACTGGAGCATTGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCAC-CGAGGCACCATCACCGGAGCATCGCCGGAG
* * *
12251761 AACCTGACCGGCGGCATTGGGGTTCCGATGATTGGGGGGCCAGGGGGTGTGCACACATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGG-CGGGGGGTGTGCGCACATGATGTGC
*
12251826 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12251891 CTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTGGCCATTAAAGTGTCTGAAATG
259 C-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12251956 TGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
12252020 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAA
** * * *
12252085 TTAAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
452 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCA--TTG
* * * **
12252150 CCATGAAACTTCACGTGAAAGCTTAAGGGACCTTTGTATGAATTTAAAAGTGATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
12252215 TGGCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
580 TGGCATGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12252279 CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCTTTTCGTCGGTTGGC
644 CATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGC
* * * * *
12252344 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-AAACAGATCGAGGGTTACAGCAGCAGGAT
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTGCAGCAGCAGGAT
* * * * * * * *
12252408 CTGCAACACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCGTCCCGGCCCTCTGACCGGCTG
769 CGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCGGCTG
* *** ** * *
12252473 AACAATCGCACACTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCGGTTGGCC
833 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA----G-T---C
*
12252538 TAG
890 TAA
* * * * * * *
12252541 GCATACGGTGTTCATTCCCAGTCTAAGATCAAACCAGACCCAGCGTTGCGGCAGCAGGAT--T-G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACA-CATGCTGG
* ** * * *** * *** * *
12252603 GC-AGCACATAGAG--GGAGACCCG-ATCGATC--C-CC--GGCTTGAGCATC-CCGCCCCTTTG
65 GCTCGGGCAT-GTGCTGGTG--CCGAATTTTTCTTCACCGAGGC---ACCATCACCGGAGCATCG
* * * * * * ** * ** * ** * * * **
12252658 --GCAG--GCTGAGCGCCCGCA-CGCTCGTTTCG-TG---GGTTGACTTAGGCGTATGAAGTTCA
124 CCGGAGAACCTGACCGGCGGCATTG-GGGTTCCGATGATCGGGGGGC-GGGGGGTGTG-CGCACA
* ** * * ** * * * * * ** ****
12252714 TTCCAAAT-CTAAGCATACGGAGTTCATT--CCCAATCTAAGATCGGATCAGACCTAGGGTTTCA
186 -T-GATGTGCGATGGGTGCTG-GTAC-TTGGCCC--T-T-ATATTGG--C-CCCCTA-TCCCTCA
* * * * ** * * *** * *** * * ****
12252776 GT-AGCACATGGTGGGCTC-GA-CCATGTGCTGGTGCCACATTT-TTCTTCGT-CGGGGCAGCAT
239 -TCA-AACCTCGAGAACTCACACCCCT-T-AAAGAG---CATTTGAGATT-TTACAGGTTTTC-T
* ** * * * * * *
12252836 CGCC-GGAG-CATCGCTGGAGAGCCTG--ATCGACGG-CA-TTGCGGTTCCGACGATCGGGGGGT
295 -GCCAGTAGCCAT---TAAAGTGTCTGAAAT-G-GGGACACTT---TTTTC-A-AAT-----GGT
***** * ** * * ** ** * * *
12252895 CAGGGGGT-GTGCGCACAT-GA---TGT-GC-G-ATGAGTGCTG-GCACTCGGCC--CTTATATT
344 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCA-T--GCCAAC-AAAAAT
* **** ** * * ** * ** * * * *
12252949 GGCCCCCTATC-CCTCTTCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTA
404 --ACAAGGATCATGTCTACCAAGTTTG-GGGC-CAAAACTCCTTCGAA-A--A----A-ATTTTA
**** * * * * * * * * *** *** *
12253012 TAGGTTTGCTGCCTGTAGCCAT-TAAAGTGTCTAAAGTGGGGACACTTTTTTCAAA-GGGTCA--
457 -AAAAAT-C--CC-G-AACCGTAAAAAGTTTCAAAAATTGTGA-A-AAATAGAAAACGAGTCATT
* ** * * * * * *
12253073 G--A--AAATCTTGTACACTTCG-AGTTTTTAGCTGA--A-TGT-T--TTTCTGCATGCCAAAAA
514 GCCATGAAA-C-T-T-CACGT-GAAGGCTTAAG-GGACCATTGTATGAATT-TACAAGCC-ATAA
* * * * ** ** * * * * ** *** *
12253127 AAAT-ACA-AGG-ATCACG-TCTACCAAGTTTGGGGCTAAAACTCCTTCCTAAAAAATTTTCAAA
571 AAATGGCATTGGCATGAAGAAATATGAAG-ATGTGCCT-AAAC-CC-ACCTACCACCCTATC---
* * * **** ** *** * **** ** * * *
12253188 AAT-CTCGAGC---CACAAAAAGT-T-T-TGAAAATCGTGAAAAATAGAAAACGAG-TCATCTTG
629 GATCCACG-GCTTGCGCATCCCGTCTCTCTG---GCCG-GCGTAGT-GCCCGCCCGCCCGTC-CG
*** * * * * * ** * *
12253245 C-CATGAAACTTCACGTAAAGGCTTAAAGGACCATTTTACGTATTTACA-GGCCA-T-AAAAAT-
687 CTC--GTTTCGTC-GGT--TGGCTT--AGG--CA---TACGGAGTT-CATTCCCAGTCTAAGATA
** *** ** * ** ** * * *
12253305 GGTATTGGCACAC-AGAAAT--ATG-A--A-GAT-GTGCATAAACCCACCTA--CCACCCTATCA
739 GG-ACCGG-AC-CGAGGGTTGCA-GCAGCAGGATCG-GCA-GCACGCA-GAAGGGGACCCGACCG
* * * * * * * *
12253360 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGTTCATTTC
797 ATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCGGC-T-GAG--CGCCCG--CAT--GCTCGTTTC
** * *
12253425 GTCAGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAA
853 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** * * **
12253465 G-ATTGAACTGGA-TTGAGTGT-TGTGACAACAGGATC-GA-CAGCA-CGCAGAGGGGGACCTGG
1 GCA-T--AC-GGAGTTCA-T-TCCCAGTCTA-A-GATCAGACCAG-ATCG-AG-GGTTG--C-GG
* * ** * ** * * * * *
12253524 CCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGG
52 -C-AACACATGC-TGGGC-T--CG-GGC-AT-G--TGCTG-GTG-CCG-A--AT--TTT--T--C
* ** * * * * ** * ***
12253589 TTGACTTAGG---CAT-A-CAGAGTTCAT-TCC-TAGTCTAAGCAT-A-CGAAGTTCATTCCCAG
95 TTCACCGAGGCACCATCACCGGAG--CATCGCCGGAG---AA-CCTGACCGGCG-GCATT-GGGG
* * * *** * * * * * *
12253645 -T-CTAAGATCAGACTGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGA-GCATGTGCTGATA
152 TTCCGATGATC-G--GGGGGCGGGGGGTGT-GC-GCACATGATGTG--CGATG--GGTGCTGGTA
*** ** * * ** * ** * *
12253707 CCGCATT-TTTCTTCAT-CGGGGCACC-ATCGCCGGAGCGTCACC-GGAGAACCTGAC-CGGCGG
208 ---C-TTGGCCCTT-ATATTGGCCCCCTATC-CCTCATC-AAACCTCGAGAA-CTCACAC--C--
* *** * ** * ****** * * * * * **
12253767 CATTGGGGTTCGGGCGATCGGGGGA-CGGGGGGGTGTGC-GCACATGATGTGCGATGAGTGCTGG
261 CCTT----AAAGAGC-AT-TTGAGATTTTACAGGTTTTCTGC-CA-G-T-AGCCATTAAAG-T-G
* * ** * ** ****
12253830 TACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGT
314 T-C-T-G-----AAATGGGGACACT-T---TTTTCAAA--T-G-G---TCACAAAATCTT---GT
* * * ** ** * ** * *
12253895 GCA-TTTGAGATTTTA-C--AGGTTTGCTG-CCAGTAGCC-ATTAAAGTATCTGAAATGGGAACA
357 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-T-GCCAACAAAAATA-C---AA--GGATCA
* *** * * **
12253954 CT-TTTTTGAA--AT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
414 -TGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCGA------A----AA---AATT-T--
** * * **
12254015 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCT-TCCGAAAAAAT
455 -T-----AAAAAAT-C-CCGAAC-CG--TAAAAAGTTT-----CAAAAAT--TGT--G-AAAAA-
** ** *** * * * *** * ** *
12254079 TTTCAAAATCCCGAACCG-CAAAAAGTTTTTAAA-ATCA--TTAAAAATAGAAAACGAGTCATCT
498 -TAGAAAA---CG-A--GTC--ATTGCCATGAAACTTCACGTGAAGGCT--TAAGGGA-CCA--T
* * * * * * *
12254140 TGCCATGTAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACTATCGATAAAAGTGGC
549 TG-TATG-AA-TTTAC---AAGCCATAA---A-AATGGCAT--------------------TGGC
*
12254205 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
584 A-T-G-A---AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
12254270 GCATTCCATCTCTCTGGCCGGTGTAGTGCCACCCACCCGCCCGCCCGCCCGCTCGATTCATCGGT
643 GCATCCCGTCTCTCTGGCCGGCGTAGTG-------CCCGCCCGCCCGTCCGCTCGTTTCGTCGGT
* ** * *
12254335 TGGCTTAGGCATACGGAGTTTC-TGCCCAGTCTAAGATCA-GACCGGATTGATGGTTGCAGCAGT
701 TGGCTTAGGCATACGGAG-TTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTGCAGCAGC
* * * * * * *
12254398 AGGATTGGCAGCACGTAGAGGGGGACCTGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCC
764 AGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCC
* * * * *
12254463 GACTGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCTGTCTAA
828 GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12254528 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTGCGACAACACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
* * * *
12254593 CTCGGGCATGTGCTGGTGTC-ACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGA-ATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGAG
* ** ** * * * * *
12254657 AACCTGACCGACGGTTTTATGGTACCGGTGATCGGGGGGCCAGGGGGTGTGCGCATATGATGTCC
130 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGG-CGGGGGGTGTGCGCACATGATGTGC
* *
12254722 GATAGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12254787 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATG
259 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12254852 GGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
12254917 GCATGCCAA-AAAAGATACAAGGATCATGTCTACCAAGTTTGGGGCCCAAAA-TCCTTCCGAAAA
388 GCATGCCAACAAAA-ATACAAGGATCATGTCTACCAAGTTTGGGG-CCAAAACTCCTT-CGAAAA
* * ** * * *
12254980 AATTTT-CAAAATCCCGAACCGCAAAAAGTTTTTAAAATCGTTAAAAATAGAAAACGAGTCGTTT
450 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTC--AT
* * * * * *
12255044 TGCCATGTAACCTCACGTGAAGACTTAAAGGACCATTGTATGAATTTACTAGCGATAAAAATGGC
513 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12255109 ATTGGAACGCAA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
578 ATTGGCATG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12255173 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCACCCACCTGCCCGCCCGCCCATTCGATTCATCGG
642 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-CGC-CC-GCCCGTCCG--C--TCGTTTCGTCGG
* *** * * * *
12255238 TTGGCTTAGGCATACGGAGTTTATGAGCAGTCTAAGATCA-GATCGGATCGATGGTTGCAGCAGT
700 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTGCAGCAGC
* * * ** * * *
12255302 AGGATCGGCAGCACACAGAGGGGGACCTGGTCGATCCCTGACTTGTGCATCCCGCCCCTCTGGCC
764 AGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCC
* * * * *
12255367 GACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
828 GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12255432 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
* * * **
12255497 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGAGA
* ** * * * *
12255562 ACCTGACCGACGGTTTTGTGGTACCGATGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTACG
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGG-CGGGGGGTGTGCGCACATGATGTGCG
12255627 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
* * * * * *
12255692 CCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCAATTATAGTGTTTGAAATGA
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
12255757 GGACACTTTTTTCAAAGGGTTACAAAATCTTGTACACTTCGAGTTTTTGGCTTAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
12255822 CATGCCAACAAAAATACAAGGATCACT-TCTACC-AGTTTGGTGTC-AAACTCCTTCCGAAAAAA
389 CATGCCAACAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAA
* * *
12255884 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCATCTTG
452 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCA--TTG
* * *
12255949 CCATGAAACTTTACGTGAAGGCTTAAGGGACCGTTGTATGAATTTAAAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
12256014 TGTCAAGCAA-AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCG
580 TGGCATG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12256078 TA-CCCGTCCCTCTGGTCGACATAGTGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAG
644 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * **
12256138 CCATACGGAGTTCATTCCCAGTCTAAGATCA-GATCGGACTGAGGGTTGCTTGCCTCAGGATCGG
709 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTGC-AGCAGCAGGATCGG
* * * * *
12256202 CAGCAAGCAGAAGGGGACCCGACTGATCCCTGACTTGCGCATGCCACCCCTCTGGCCGGCTGAGC
772 CAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCCCCCCTCTGGCCGGCTGAGC
* * *
12256267 GCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *** *
12256324 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCCGATCAAGGGTTACGGTTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
* ** * ** * *
12256389 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGAGA
* * * * *
12256454 ACTTGACTGGCGGCATTGGGGTTCCGGTGATTGGGAGGGCTGGGGGGTGTGCGTACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGG-GGGC-GGGGGGTGTGCGCACATGATGTGC
*
12256519 GATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12256584 CCCCTTTAAAGAGCATTTGAGATTTTATC-GGTTTGCTACCAGTAGCCATTAAAATGTCT-AAAT
259 CCCC-TTAAAGAGCATTTGAGATTTTA-CAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
12256647 GGGGAACTCTTTTTTCAAATGGTTACAAAATCTTGTACAGTT-GAAGTTTTTACCTAAATTTTTT
322 GGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTT
** * * * * *
12256711 TGTGCACACCAATAAAAATACAAGAATCATGTCTACCAAGTTTGAGGCCAAAACTCTTTCTAAAA
385 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAA
* * ** ** * * *
12256776 AAATTTTAAAAAATCTCAAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAGCGAGTCGTC
449 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTC--A
* *
12256841 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12256906 CATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
577 CATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * *
12256971 CGCATCTAGTCTCCCTGGCCGACGTAGTGCCCGCCCGCCCGCCCTTCCGCTCGTTTCGTCGGTTG
642 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG----TCCGCTCGTTTCGTCGGTTG
* * ** *
12257036 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-A-CACACTAGACTAAGGGTTGC-GACAGTA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGAC-C-GGACCGAGGGTTGCAG-CAGCA
* * * * * *
12257098 GGATCGGCATCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCCCATCCCGACCCTCTGG-CG
765 GGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCG
* *
12257162 AGCTGAGTGCCCGCATGCTCGTTTTGTGGGTTGACTTAGG----C--A--T-A----CAG----A
829 -GCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12257210 G--TAC--A--T--TT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
*** * * ** *
12257266 CTCCAACATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGAGA
* * * * * *
12257331 ACCTGACCGGTGACATTGGGGTTCCAATGATTGGGGGGGCCAGGGGGTGTGCGCACATGATGTAC
131 ACCTGACCGGCGGCATTGGGGTTCCGATGA-TCGGGGGG-CGGGGGGTGTGCGCACATGATGTGC
*
12257396 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12257461 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATG
259 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12257526 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAA-TTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12257590 GCATGCCAAAAAAAATACAAGGATCACGTCTACCACA-TTTGGAGCCAAAACTCCTTCCGAAAAA
388 GCATGCCAACAAAAATACAAGGATCATGTCTACCA-AGTTTGGGGCCAAAACTCCTT-CGAAAAA
** * **
12257654 ATTTTAAAAAATGTCGAATCC-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
451 ATTTTAAAAAATCCCGAA-CCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCA--T
* *
12257718 TGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAC
513 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** *
12257783 ATTGGCACCTAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
578 ATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12257848 GCATCCCGTCTCTCTGGCCAGCGTAGTACCCGCCGGCCCGCCTGCTCGCTCGTTTCGTCGGTTGG
643 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--T-C-CGCTCGTTTCGTCGGTTGG
* **
12257913 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTT------GC-GG-T
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCAGCAGCAGGAT
* * * *
12257970 ----AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGGATCCCGCCCCTCTGGCCGGTTG
769 CGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCGGCTG
* * ** ** *
12258031 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTTGTTTCCAGTCTAA
833 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * **
12258091 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGCTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
* * ** * ** **
12258156 CTCGGACATGTGCTGTTGCC-ACATTTTT-TTCGTCGGGGCACCATCACTAGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGA-ATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGAG
* * * * *
12258219 AACCTAACCGGCAGCATTGGGGTTCCGGTGATCGGGGGGCCGGAGGGATGTGCGCACATGATGTA
130 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGG-CGG-GGGGTGTGCGCACATGATGTG
* * * *
12258284 CGATGGTTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12258349 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
258 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12258414 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * *
12258479 TGCATGTGAA-AAATAATACAATGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTCCGAAAA
387 TGCATGCCAACAAA-AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAA
* * * * * * * ** * * *
12258543 AATTTAAAAAAATACTGAACTGCAAAATGTTTCGAAAATCATGAAAAAAAGAAAATGAGTCGTCT
450 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTC--AT
* *
12258608 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTAGAAGCCATAAAAATGGC
513 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12258673 AGTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
578 ATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12258738 GCATCCCGTCTCTCGGGCCGACTTAGTGCCCG-CC-CAC--ACGCTCGTTTCGTCGGTTGGCTTA
643 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** * * *
12258799 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGGATAGGT
708 GGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCAGCAGCAGGATCGGC
* * * * * *
12258864 AGCACGTAGAGGGGGACCCGATCGATCCACGGCTTGCGCAACCCGCCTCTCTGGCCGGCTGAGCG
773 AGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCGGCTGAGCG
* * *
12258929 CCCGCATGCCCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGCCTAA
837 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12258985 G-AT-C-G-G---A----C---C---G----GA-C---T-GAAGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
* * * ** * * * *
12259024 CTCGGGCATGTGCTGGGGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCTTCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGAGA
* * * ** *
12259089 ACCTGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCCGGGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGG--C-GGGGGGTGTGCGCACATGATGTG
* * *
12259154 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACATTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12259219 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
258 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12259284 GGGGACACTTTTTTCAAATGGCCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * ** * *
12259349 TGCATGCCAAAAAAAATACAAGGATCACGTCTTCCAGGTTTGTGGTAAAAAATCCTTTCAAAAAA
387 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
* ** ** * * *
12259414 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTGGAAAATCATGAAAAATAAAAAATGAGTCCTCTT
451 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGT-C-ATT
*
12259479 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
12259544 TTGGCTTGCAGAAATATGAAGATGTGCCAAAACCAACCTACCACCCTATCAATCTACGGCTTGCG
579 TTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12259609 TATCCCGTCTCTCTAGCCGTCGTAGTGCCCACCCGCTCGCCCGTCGGCTCGTTTCGTCGGTTGGC
644 CATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGC
* * * *
12259674 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GATCAGACCGAGGGTTGCGGCAGTAGGAT
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTGCAGCAGCAGGAT
** * * * * * *
12259738 CGATAGCATGTAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATGCCACCCCTCTGGCCAGCTG
769 CGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCCCCCCTCTGGCCGGCTG
* * * *
12259803 AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAA
833 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** *
12259863 GCATATGAAGTTCATTCCCAATCTAAGATCGGACCGGCGCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
* ** * ** *
12259928 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGAGA
* * *
12259993 ACCTGACTGGCGGCATTGGAGTTCC-AGCGATCGGGGGGGCCGACGGGGGTGTGCGCACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGA-TGATC-GGGGGG-CG--GGGGGTGTGCGCACATGATG
* * * *
12260057 TGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAATCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
12260122 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTTTGAA
256 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12260187 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTGGCTG-ATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
12260251 TGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAAA
385 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAA
* * * * ** ** * *
12260316 AAAGTTTAAAAAATCTCGATCCGTAAAAATTTTTGAAAATCATGAAGAATAGAAAATCAATCGTC
449 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA-CGA--GTC
*
12260381 -TTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
511 ATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
12260445 AAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTT
576 GCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
12260510 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCTCGTTTCGTCAGTTGGCT
641 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
* * *
12260571 TAGGCATATGGAGTTCATTCCCAGTCTAAGATTA-GACCGAACCAAGGGTTGC
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGGACCGGACCGAGGGTTGC
12260623 GATAGCACAT
Statistics
Matches: 9200, Mismatches: 1665, Indels: 1504
0.74 0.13 0.12
Matches are distributed among these distances:
833 97 0.01
834 9 0.00
835 7 0.00
836 114 0.01
837 161 0.02
838 5 0.00
840 2 0.00
841 7 0.00
842 18 0.00
843 3 0.00
844 2 0.00
845 6 0.00
846 1 0.00
847 5 0.00
848 39 0.00
849 20 0.00
850 52 0.01
851 3 0.00
852 6 0.00
853 11 0.00
854 4 0.00
856 9 0.00
857 8 0.00
858 6 0.00
859 4 0.00
860 26 0.00
861 4 0.00
862 45 0.00
863 9 0.00
864 115 0.01
865 9 0.00
866 6 0.00
867 30 0.00
868 61 0.01
869 103 0.01
870 460 0.05
871 39 0.00
872 7 0.00
873 8 0.00
874 13 0.00
875 4 0.00
876 333 0.04
877 315 0.03
878 220 0.02
879 23 0.00
880 2 0.00
881 41 0.00
882 89 0.01
883 49 0.01
884 9 0.00
885 5 0.00
886 3 0.00
887 4 0.00
888 22 0.00
889 273 0.03
890 330 0.04
891 157 0.02
892 492 0.05
893 734 0.08
894 337 0.04
895 208 0.02
896 108 0.01
897 19 0.00
898 169 0.02
899 53 0.01
900 152 0.02
901 341 0.04
902 277 0.03
903 280 0.03
904 1097 0.12
905 216 0.02
906 19 0.00
907 19 0.00
908 15 0.00
909 54 0.01
910 15 0.00
911 5 0.00
912 9 0.00
913 6 0.00
914 18 0.00
915 7 0.00
916 8 0.00
917 8 0.00
918 18 0.00
919 22 0.00
920 14 0.00
921 27 0.00
922 11 0.00
923 12 0.00
924 60 0.01
925 13 0.00
926 8 0.00
927 29 0.00
928 26 0.00
929 15 0.00
930 17 0.00
931 4 0.00
932 38 0.00
933 1 0.00
934 7 0.00
936 1 0.00
937 6 0.00
938 2 0.00
939 3 0.00
940 3 0.00
941 2 0.00
942 9 0.00
943 11 0.00
944 2 0.00
945 6 0.00
947 10 0.00
948 2 0.00
949 5 0.00
951 1 0.00
952 1 0.00
953 5 0.00
955 2 0.00
956 3 0.00
957 4 0.00
958 7 0.00
960 2 0.00
961 6 0.00
962 8 0.00
963 7 0.00
964 3 0.00
965 7 0.00
966 4 0.00
967 6 0.00
968 9 0.00
969 9 0.00
970 11 0.00
971 9 0.00
972 9 0.00
973 5 0.00
974 3 0.00
975 1 0.00
976 3 0.00
980 2 0.00
981 2 0.00
982 2 0.00
983 4 0.00
984 7 0.00
985 4 0.00
986 4 0.00
987 2 0.00
988 8 0.00
989 16 0.00
990 13 0.00
991 11 0.00
992 17 0.00
993 4 0.00
994 20 0.00
995 10 0.00
996 5 0.00
997 2 0.00
998 1 0.00
999 1 0.00
1001 6 0.00
1002 2 0.00
1003 4 0.00
1004 2 0.00
1005 8 0.00
1006 3 0.00
1007 2 0.00
1008 1 0.00
1010 5 0.00
1011 7 0.00
1012 1 0.00
1013 1 0.00
1014 1 0.00
1015 6 0.00
1016 6 0.00
1017 4 0.00
1018 9 0.00
1019 7 0.00
1020 6 0.00
1023 3 0.00
1024 1 0.00
1025 12 0.00
1026 19 0.00
1027 8 0.00
1028 3 0.00
1029 10 0.00
1030 5 0.00
1031 1 0.00
1032 8 0.00
1033 8 0.00
1034 15 0.00
1035 7 0.00
1036 16 0.00
1037 5 0.00
1038 6 0.00
1039 2 0.00
1040 3 0.00
1041 2 0.00
1042 4 0.00
1043 2 0.00
1044 5 0.00
1045 2 0.00
1046 2 0.00
1047 1 0.00
1048 1 0.00
1049 2 0.00
1051 1 0.00
1052 4 0.00
1053 4 0.00
1054 1 0.00
1055 1 0.00
1056 1 0.00
1058 6 0.00
1059 7 0.00
1060 12 0.00
1061 5 0.00
1063 45 0.00
1064 1 0.00
1065 11 0.00
1066 6 0.00
1067 16 0.00
1068 10 0.00
1069 5 0.00
1070 11 0.00
1071 55 0.01
1072 9 0.00
1073 5 0.00
1074 10 0.00
1075 10 0.00
1076 4 0.00
1077 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACACATGCTGGG
CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTT
AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCA
GAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCCGGCTGAGCGCCCGCATGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12250763 original size:26 final size:26
Alignment explanation
Indices: 12250713--12250765 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12250703 GTTGACTTAG
**
12250713 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12250739 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12250765 G
1 G
12250766 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12252097 original size:893 final size:893
Alignment explanation
Indices: 12248107--12252529 Score: 5133
Period size: 893 Copynumber: 5.0 Consensus size: 893
12248097 GTTGACTTAG
* * *
12248107 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
12248172 CTCGGGCATGTGATGGTGTCATATTTTTCTTCAC-CGGGACACTATCACCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * * *
12248236 AACCTGACCGACGGCATTGGGGTTCCGATGATCGAGGGAGCCGGGGGGGTGTGTGCCCATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGATGATCG-GGGGGCC-AGGGGGTGTGCGCACATGATGT
* * * * * *
12248301 GCGATGGGTGCTGGTAGTTGGCCCCTATATTTGCCTCCTAT-CGTCATCAAACCTGGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
12248365 CACTCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTG-ATGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
12248429 TGCAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
12248494 GTGCATGCTAACAAAAATACAAGGATCACGTCTGCCACGTTTGGGGCCAAAACTCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
12248559 AATTTTAAAAAATCCCGAACCCTAAAAGGTTTCAAAAATCGTGAAAAATAGAACACGAGTCATCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
12248624 TGCCATGAAACTTCACGTAAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12248689 ATTGGCATGCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGACTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12248754 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
12248819 CTTAGGCATACAGAGTTGATTCCCAGTGTAAGAT-AGGATCGGACCGAGGGTTGCGGCAGCAGGA
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGCT-AGACCGAGGGTTGCAGC-GTAGGA
* * * * * * * *
12248883 TCGGCAGCACGTAGAGAGGGACCC-ATCCAATCCCCGACTTACGCATCCCACCTCTCTGGTCGGC
768 TCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
12248947 TGAGCGCCCG-TACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 TGAGCGCCCGCT-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12249009 GCATACGGAGTCCATT-CCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
12249073 CTCGAGCTTGTGCTGGTGCCGCATTTTCCTACAC-CGAGGCACCATCACCGGAGCATTGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * *
12249137 AACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGTCGGGAGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCAGG-GGGTGTGCGCACATGATGTG
12249202 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12249267 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGCAGTCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12249332 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12249397 TGCATGCCAACAAAATTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTAT-CGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAA
* * * *
12249461 ATTTTTAAAAAATCCTGAACCGTAAAAAGTTT-AAAAATTGTGAAAAATAGAAAACGA---GTAT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
12249522 TACCACGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
12249587 ATTGGAATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTAC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
12249652 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
12249717 GGCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACCAGACCGAGGGTTGCAACAGCAAGATCAG
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGG-CTAGACCGAGGGTTGCAGC-GTAGGATCGG
* * *
12249781 CAGCACGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCGACTGAGC
772 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
12249845 GCCTGCAT-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCTAGTCTAG
837 GCCCGC-TCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
12249902 GCATACGGAGTTCATTACCAGTCTTTGATCGGATCAGATCGAGGGTTGCGGCAACACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12249967 CTTGGGCATGTGCTGCTGCCGAATTTTTCTTCGTCGAGGCACCAT---C---G---C--CGGATA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * *
12250021 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGCGGGGCC-GGGGGTGTGTGCACATGATGT-C
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGG-GGGGCCAGGGGGTGTGCGCACATGATGTGC
* *
12250084 GTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT---TCATCAATGCCTCG-GAAC-CAC
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA-ACCTCGAGAACTCAC
* *
12250144 A--CCCTT-AAGAGCA-ATGAG--TTTACTA-GTTTTCTGCCAGTAGCCATTAAAG-GTCTG-AA
259 ACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12250200 TGGGAACACTTTTTTCAAATGGCCAC-AAA-CTTGTACACTTCAAG--TTTAGCT-AATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12250260 GTGCATGCCAA-AAAAATAC-AGGATCATGTCTACCAAGTTT--GG-C-AAA-TTCTT-CG----
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * *
12250313 AA-TTT-AAAAATCTCGAACCG----CA-TTT-TTAAATC--G-AAAATAG-AAATGA-TCATC-
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * ** * * *
12250364 TGGCATGTAACTTCA--T--ATTCTTAA-TGACCATTGTA-G-A-TTACTAG-GATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12250420 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12250485 GCATCCCATCTCTCTGGCCGGCGTAGTGCTACCCACCCGCCGCCGCCCTCGATTCATCGGTTGGC
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG---CCCGCCCG-C-CCG--CTCGTTTCGTCGGTTGGC
* ** ** * * *
12250550 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCATACCGGACCGATGGTTGTAGTAGTAGGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGCTAGACCGAGGGTTGCAG-CGTAGGATC
* ** * * * ** * **
12250615 GGTATTACGTAGAGGAGGACCTGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAACTGA
770 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
12250680 GTGCCCGCAT-GTTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
835 GCGCCCGC-TCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
12250739 GCATACGGAGTTCATTCCCAATCTAAGATCGAATCGGACCGAGGGTTGCAGCACCATATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
* **
12250804 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCAC-CGGGGTTCCATCACCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * **
12250868 AACCTGACCGGCGGCTTTGGGGTACCGGTGATCGGGGGGCGGGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGC-CAGGGGGTGTGCGCACATGATGTG
12250933 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12250998 ACCCCCTTAAA-AGGCATTTGATATTTTACAGGTTTGCTGCCAGTAG-CATTTATAGTGTCTAAA
259 ACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAA
* * * *
12251061 ATGAGGACACTTTTTTCAAATGGTTACAAAGTCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
12251126 TATGCGTCCCAACAAAAATACAAGGATCACTTCTACC-AGTTTGGTGCC-AAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
12251189 AAATTTTAAAAAATCCCGAACCGTAACAGGTTTCAAAAATTTTGAAAAATAGAAAATGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12251254 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * * * *
12251319 CATTTTCACGCAAAAATATGAACATGTGCCTAAACCCACCAACCACCTTATCGATCCACAGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * *
12251384 CGTA-CCCGTCTCTCTGGTTGGCATAGTGCCAGCTCGCCCGTTCGTTTCGTCGGTTGGCTTAGGC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
12251448 ATACGGAGTTCATTCCCAGTCTAAGATCAGGCTGGACCGAGGGTTGCTTGCCTCAAGATCGGCAG
712 ATACGGAGTTCATTCCCAGTCTAAGATCAGGCTAGACCGAGGGTTGC-AGCGT-AGGATCGGCAG
* * * * * * *
12251513 CAAGCAGAAGGGGACCCGACTGATCCCCGACTTGCACATGCCGCCCCTCTGGCCGGCTGAACGCC
775 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
12251578 CGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
12251632 GCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCCGATCGAGGGTTACGGTAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12251697 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCCTCGGGGCACCATCACTGGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* *
12251762 ACCTGACCGGCGGCATTGGGGTTCCGATGATTGGGGGGCCAGGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
*
12251827 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
12251892 TCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTGGCCATTAAAGTGTCTGAAATGT
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12251957 GGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
12252021 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** * * *
12252086 TAAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
456 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * **
12252151 CATGAAACTTCACGTGAAAGCTTAAGGGACCTTTGTATGAATTTAAAAGTGATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
**
12252216 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
586 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
12252281 TCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCTTTTCGTCGGTTGGCTT
651 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-T-CG----TTTCGTCGGTTGGCTT
** * * * *
12252346 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAAC-AGATCGAGGGTTACAGCAGCAGGATCT
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGGCTAGACCGAGGGTTGCAGC-GTAGGATCG
* * * * * * *
12252410 GCAACACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCGTCCCGGCCCTCTGACCGGCTGAA
771 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*** * * * *
12252475 CAATCGCACACTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTC
836 CGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
12252530 GGTTGGCCTA
Statistics
Matches: 2986, Mismatches: 419, Indels: 233
0.82 0.12 0.06
Matches are distributed among these distances:
832 4 0.00
833 99 0.03
834 10 0.00
835 1 0.00
836 106 0.04
837 166 0.06
838 5 0.00
840 2 0.00
841 5 0.00
842 18 0.01
843 3 0.00
845 7 0.00
846 2 0.00
847 5 0.00
848 34 0.01
849 20 0.01
850 52 0.02
851 3 0.00
852 6 0.00
853 11 0.00
854 4 0.00
856 9 0.00
857 8 0.00
858 6 0.00
859 4 0.00
860 26 0.01
861 4 0.00
862 45 0.02
863 9 0.00
864 34 0.01
865 7 0.00
866 6 0.00
867 30 0.01
868 16 0.01
869 38 0.01
870 6 0.00
871 31 0.01
872 5 0.00
873 6 0.00
874 7 0.00
875 4 0.00
877 6 0.00
878 14 0.00
879 19 0.01
881 39 0.01
882 18 0.01
883 39 0.01
884 8 0.00
885 4 0.00
887 1 0.00
888 8 0.00
889 6 0.00
890 5 0.00
891 96 0.03
892 222 0.07
893 525 0.18
894 225 0.08
895 8 0.00
896 15 0.01
897 2 0.00
898 148 0.05
899 28 0.01
900 128 0.04
901 331 0.11
902 224 0.08
903 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGGCTAGACCGAGGGTTGCAGCGTAGGATCGGCAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCTCG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12252534 original size:34 final size:34
Alignment explanation
Indices: 12252496--12252563 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
12252486 TCATTTCGTG
12252496 GGTT-GACTGAGGCATACGGAGTTCATTCCCAGTC
1 GGTTGGACT-AGGCATACGGAGTTCATTCCCAGTC
* *
12252530 GGTTGGCCTAGGCATACGGTGTTCATTCCCAGTC
1 GGTTGGACTAGGCATACGGAGTTCATTCCCAGTC
12252564 TAAGATCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 28 0.90
35 3 0.10
ACGTcount: A:0.18, C:0.25, G:0.29, T:0.28
Consensus pattern (34 bp):
GGTTGGACTAGGCATACGGAGTTCATTCCCAGTC
Found at i:12252688 original size:193 final size:193
Alignment explanation
Indices: 12252334--12252717 Score: 482
Period size: 193 Copynumber: 2.0 Consensus size: 193
12252324 CGCTCTTTTC
* * * *
12252334 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAACAGATCGAGGGTTACAG
1 GTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAACAGACCCAGCGTTACAG
* * * * * *
12252399 CAGCAGGATCTGCAACACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCGTCCCGGCCCTCT
66 CAGCAGGATCTGCAACACACAGAGGGAGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCT
* * *
12252464 GACCGGCTGAACAATCGCACACTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCATTCCCA
131 GACAGGCTGAACAACCGCACACTCATTTCGTGGGTTGACTGAGGCATACGAAGTTCATTCCCA
* * * *
12252527 GTCGGTTGGCCTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAAACCAGACCCAGCGTTGCGG
1 GTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAACAGACCCAGCGTTACAG
* * * *
12252592 CAGCAGGAT-TGGCAGCACATAGAGGGAGACCCGATCGATCCCCGGCTTGAGCATCCCGCCCCTT
66 CAGCAGGATCT-GCAACACACAGAGGGAGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTC
* * ** * * * * *
12252656 TGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTATGAAGTTCATTCC
130 TGACAGGCTGAACAACCGCACACTCATTTCGTGGGTTGACTGAGGCATACGAAGTTCATTCC
12252718 AAATCTAAGC
Statistics
Matches: 160, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
192 1 0.01
193 159 0.99
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (193 bp):
GTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAACAGACCCAGCGTTACAG
CAGCAGGATCTGCAACACACAGAGGGAGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCT
GACAGGCTGAACAACCGCACACTCATTTCGTGGGTTGACTGAGGCATACGAAGTTCATTCCCA
Found at i:12253635 original size:26 final size:26
Alignment explanation
Indices: 12253598--12253650 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12253588 GTTGACTTAG
*
12253598 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12253624 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
12253650 G
1 G
12253651 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12254541 original size:26 final size:26
Alignment explanation
Indices: 12254505--12254554 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12254495 GACTTAGGCG
*
12254505 TACGGAGTTCATTCCCTGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
12254531 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12254555 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:12254692 original size:904 final size:901
Alignment explanation
Indices: 12252527--12260623 Score: 10229
Period size: 904 Copynumber: 9.1 Consensus size: 901
12252517 TTCATTCCCA
* * * * *
12252527 GTCGGTTGGCCTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAAACCAGACCCAGCGTTGCGG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * ** * * * *
12252592 CAGCAGGATTGGCAGCACATAGAGGGAGACCCGATCGATCCCCGGCTTGAGCATCCCGCCCCTTT
66 CAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
12252657 GGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTATGAAGTTCATTCCAAAT
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
12252722 CTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCTAGGGTTTCAGTAGCACATGG
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGC
** * * *
12252787 TGGGCTCGACCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCAGCATCGCCGGAGCATCGCTG
261 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
* * * * **
12252852 GAGAGCCTGATCGACGGCATTGCGGTTCCGACGATCGGGGGGTC-AGGGGGTGTGCGCACATGAT
326 GAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGG-CGAGGGGGTGTGCGCACATGAT
* * * *
12252916 GTGCGATGAGTGCTGGCACTCGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACT
390 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
12252981 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCTGTAGCCATTAAAGTGTCT-A
455 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
12253045 AAGTGGGGACACTTTTTTCAAAGGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTT
520 AA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
12253110 TTTCTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCTA
584 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * *
12253175 AAAAATTTTCAAAAATCTCGAGCCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCA
649 AAAAATTTT-AAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCA
* * * * * *
12253240 TCTTGCCATGAAACTTCACGTAAAGGCTTAAAGGACCATTTTACGTATTTACAGGCCATAAAAAT
713 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
12253305 GGTATTGGCACACAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCAATCCACGGCT
778 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
12253370 TGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGTCCGTTCATTTC
843 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTC
* * * ** ** * *
12253425 GTCAGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGAT-TGAACTGGATTGAGTGTTGTG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCG
* ** * * * *
12253489 ACAACAGGATCGACAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTT
65 GCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * *
12253554 TGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAG
130 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
12253619 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CTGAACCGAGGGTTGTGGCAGCACAT
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCGGCAGCACAT
* * * * * *
12253683 GCTGGGCTCGAGCATGTGCTGATACCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCGTCAC
259 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * *
12253748 CGGAGAACCTGACCGGCGGCATTGGGGTTCGGGCGATCGGGGGACGGGGGGGTGTGCGCACATGA
324 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCGAGGGGGTGTGCGCACATGA
* *
12253813 TGTGCGATGAGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
389 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
12253878 TCACACTCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTG
454 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
12253943 AAATGGGAACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
519 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
12254008 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
584 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * * *
12254073 AAAAATTTTCAAAATCCCGAACCGCAAAAAGTTTTTAAAATCATTAAAAATAGAAAACGAGTCAT
649 AAAAATTTTAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
* * * * * *
12254138 CTTGCCATGTAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACTATCGATAAAAGTG
714 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
12254203 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
779 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12254268 GCGCATTCCATCTCTCTGGCCGGTGTAGTGCCACCCACCCGCCCGCCCGCCCGCTCGATTC
844 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG---CCCACCCGCCCGCCCGCCCGCTCGTTTC
* * * ** * *
12254329 ATCGGTTGGCTTAGGCATACGGAGTTTC-TGCCCAGTCTAAGATCAGACCGGATTGATGGTTGCA
1 GTCGGTTGGCTTAGGCATACGGAG-TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * * * * *
12254393 GCAGTAGGATTGGCAGCACGTAGAGGGGGACCTGGCCGATCCCCGACTTGTGCATCCCGCCCCTC
65 GCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
12254458 TGGCCGACTGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCTG
130 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
12254523 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTGCGACAACACATA
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATG
* * * * *
12254588 CTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTC
260 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
* ** ** * * *
12254653 GGAGAACCTGACCGACGGTTTTATGGTACCGGTGATCGGGGGGCCAGGGGGTGTGCGCATATGAT
325 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCGAGGGGGTGTGCGCACATGAT
* * *
12254718 GTCCGATAGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
390 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
12254783 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTGA
455 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
12254848 AATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
520 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
12254913 TTATGCATGCCAAAAAAGATACAAGGATCATGTCTACCAAGTTTGGGGCCCAAAATCCTTCCGAA
585 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* * * * * * *
12254978 AAAATTTTCAAAATCCCGAACCGCAAAAAGTTTTTAAAATCGTTAAAAATAGAAAACGAGTCGTT
650 AAAATTTTAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATC
* * * * * *
12255043 TTGCCATGTAACCTCACGTGAAGACTTAAAGGACCATTGTATGAATTTACTAGCGATAAAAATGG
715 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12255108 CATTGGAACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
780 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
12255173 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCACCCACCTGCCCGCCCGCCCATTCGATTC
845 CGCATCCCGTCTCTCTGGCCGGCGTAGTG---CCCACCCGCCCGCCCGCCCGCTCGTTTC
* * *** * * * * *
12255233 ATCGGTTGGCTTAGGCATACGGAGTTTATGAGCAGTCTAAGATCAGATCGGATCGATGGTTGCAG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * ** * * *
12255298 CAGTAGGATCGGCAGCACACAGAGGGGGACCTGGTCGATCCCTGACTTGTGCATCCCGCCCCTCT
66 CAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
12255363 GGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGT
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
12255428 CTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAGCACATGC
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGC
* * **
12255493 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTTG
261 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
* ** * * * *
12255558 GAGAACCTGACCGACGGTTTTGTGGTACCGATGATCGGGGGGCCAGGGGGTGTGCGCACATGATG
326 GAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCGAGGGGGTGTGCGCACATGATG
*
12255623 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
391 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
12255688 ACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCAATTATAGTGTTTGAA
456 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
12255753 ATGAGGACACTTTTTTCAAAGGGTTACAAAATCTTGTACACTTCGAGTTTTTGGCTTAATTTTTT
521 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
12255818 TGTGCATGCCAACAAAAATACAAGGATCACTTCTACC-AGTTTGGTGTC-AAACTCCTTCCGAAA
586 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* ** * *
12255881 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCATC
651 AAATTTT-AAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATC
* * *
12255946 TTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCGTTGTATGAATTTAAAAGCCATAAAAATGG
715 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
12256011 CATTGTCAAGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTG
780 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12256076 CGTA-CCCGTCCCTCTGGTCGACATAGT--------GCCCGCCCGCCCGCTCGTTTC
845 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTC
* * * * *
12256124 GTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCTT
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-G
* * * * * * * *
12256189 GC-CTCAGGATCGGCAGCAAGCAGAAGGGGACCCGACTGATCCCTGACTTGCGCATGCCACCCCT
65 GCAGT-AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* *
12256253 CTGGCCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
129 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * * * * **
12256318 GTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCCGATCAAGGGTTACGGTTGCACAT
194 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACAT
* * *
12256383 GCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGT
259 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * * *
12256448 CAGAGAACTTGACTGGCGGCATTGGGGTTCCGGTGATTGGGAGGGCTG-GGGGGTGTGCGTACAT
324 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGG-GGGC-GAGGGGGTGTGCGCACAT
*
12256512 GATGTGCGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
387 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
12256577 ACTCACACCCCTTTAAAGAGCATTTGAGATTTTATC-GGTTTGCTACCAGTAGCCATTAAAATGT
452 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * *
12256641 CT-AAATGGGGAACTCTTTTTTCAAATGGTTACAAAATCTTGTACAGTT-GAAGTTTTTACCTAA
516 CTGAAATGGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGA
** * * * * * *
12256704 ATTTTTTTGTGCACACCAATAAAAATACAAGAATCATGTCTACCAAGTTTGAGGCCAAAACTCTT
579 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
** * * * *
12256769 TCTAAAAAAATTTTAAAAAATCTCAAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAGCG
644 TCCGAAAAAATTTT-AAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
* * *
12256834 AGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACA
708 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
12256899 AAAATGGCATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
773 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
** * * * **
12256964 CGGCTTGCGCATCTAGTCTCCCTGGCCGACGTAGTGCCCGCCCGCCCGCCCTTCCGCTCGTTTC
838 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTC
* * * ** *
12257028 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAACACACTAGACTAAGGGTTGCGA
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * * * *
12257093 CAGTAGGATCGGCATCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCCCATCCCGACCCTCT
66 CAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
12257158 GG-CGAGCTGAGTGCCCGCATGCTCGTTTTGTGGGTTGACTTAGG----C--A--T-A----CAG
131 GGCCG-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
12257209 ----AG--TAC--A--T--TT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATG
195 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATG
*** * *
12257261 CTGGGCTCCAACATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCC
260 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
* * ** * *
12257326 GGAGAACCTGACCGGTGACATTGGGGTTCCAATGATTGGGGGGGCCAGGGGGTGTGCGCACATGA
325 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGA-TCGGGGGGCGAGGGGGTGTGCGCACATGA
* *
12257391 TGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
389 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
12257456 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTGGCCATTAAAGTGTCTG
454 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
12257521 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAA-TTT
519 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
12257585 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCACA-TTTGGAGCCAAAACTCCTTCCG
584 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAAATCCTTCCG
* **
12257649 AAAAAATTTTAAAAAATGTCGAATCC-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
648 AAAAAATTTT-AAAAATCTCGAA-CCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
*
12257713 CATCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
711 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
12257778 ATGACATTGGCAC-CTAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
776 ATGGCATTGGCACGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
12257842 GCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTACCCGCCGGCCCGCCTGCTCGCTCGTTTC
840 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTC
* *
12257904 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTT---G
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* *
12257966 C----GG-T----AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGGATCCCGCCCCTCT
66 CAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * ** ** *
12258022 GGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTTGTTTCCAGT
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
12258087 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGCTGCACATGC
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGC
* * * * ** **
12258152 TGGGCTCGGACATGTGCTGTTGCCACATTTTT-TTCGTCGGGGCACCATCACTAGAGCATCATCG
261 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
* * *
12258216 GAGAACCTAACCGGCAGCATTGGGGTTCCGGTGATCGGGGGGCCG-GAGGGATGTGCGCACATGA
326 GAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGG-CGAG-GGGGTGTGCGCACATGA
* * * * *
12258280 TGTACGATGGTTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAAC
389 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
12258345 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTG
454 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
12258410 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
519 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
** * * *
12258475 TTTGTGCATGTGAAAAATAATACAATGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTCCGA
584 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * * * * *
12258540 AAAAATTTAAAAAAATACT-GAACTGCAAAATGTTTCGAAAATCATGAAAAAAAGAAAATGAGTC
649 AAAAATTT-TAAAAAT-CTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
* * *
12258604 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTAGAAGCCATAAAAA
712 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
12258669 TGGCAGTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
777 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
12258734 TTGTGCATCCCGTCTCTCGGGCCGACTTAGT--------GCCCGCCCACACGCTCGTTTC
842 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTC
* * *
12258786 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * * * * * *
12258851 CAGTAGGATAGGTAGCACGTAGAGGGGGACCCGATCGATCCACGGCTTGCGCAACCCGCCTCTCT
66 CAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
12258916 GGCCGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGC
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
*
12258981 CTAAG-AT-C-G-G---A---CC-G-----GA-C---T--GA---A-GGTTGTGGCAGCACATGC
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGC
* * * *
12259020 TGGGCTCGGGCATGTGCTGGGGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCTTCACCG
261 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
* * * * * *
12259085 GAGAACCTGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCCGGGGGGGTGTGTGCACATGA
326 GAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGG--CGAGGGGGTGTGCGCACATGA
* * *
12259150 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACATTGAGAAC
389 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
12259215 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG
454 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
12259280 AAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTT
519 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * ** * *
12259345 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTTCCAGGTTTGTGGTAAAAAATCCTTTCAA
584 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * * * *
12259410 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTGGAAAATCATGAAAAATAAAAAATGAGTCC
649 AAAAATTTT-AAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCA
*
12259475 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAAT
713 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * * *
12259540 GGCATTGGCTTGCAGAAATATGAAGATGTGCCAAAACCAACCTACCACCCTATCAATCTACGGCT
778 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
12259605 TGCGTATCCCGTCTCTCTAGCCGTCGTAGTGCCCACCCGCTCGCCCGTCGGCTCGTTTC
843 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTC
*
12259664 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
** * * * * *
12259729 CAGTAGGATCGATAGCATGTAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATGCCACCCCTCT
66 CAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
12259794 GGCCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCATTCCCAGT
131 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
12259859 CTAAGCATATGAAGTTCATTCCCAATCTAAGATCGGA-CCGGCGCGAGGGTTGCGGCAGCACATG
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC-CGAGGGTTGCGGCAGCACATG
*
12259923 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
260 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
* * * * *
12259988 AGAGAACCTGACTGGCGGCATTGGAGTTCCAGCGATCGGGGGGGCCGACGGGGGTGTGCGCACAT
325 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATC-GGGGGG-CGA-GGGGGTGTGCGCACAT
* * * *
12260053 GATGTGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAATCTCGAGA
387 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
12260118 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTT
452 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
12260183 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTGGCTG-ATT
517 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
12260247 TTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAACTCCTTC
582 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTC
* * * * * *
12260311 CAAAAAAAGTTTAAAAAATCTCGATCCGTAAAAATTTTTGAAAATCATGAAGAATAGAAAATC-A
646 CGAAAAAA-TTTTAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAA-CGA
* * *
12260375 ATCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAA
709 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * *
12260440 AAATGAAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
774 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
12260505 GACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCCCGCTCGTTTC
839 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTC
* * * *
12260560 GTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACC-GAACCAAGGGTTGCG
1 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCG
12260624 ATAGCACATG
Statistics
Matches: 6309, Mismatches: 753, Indels: 276
0.86 0.10 0.04
Matches are distributed among these distances:
864 81 0.01
865 2 0.00
868 44 0.01
869 68 0.01
870 457 0.07
871 1 0.00
872 2 0.00
873 1 0.00
876 335 0.05
877 311 0.05
878 211 0.03
879 2 0.00
880 1 0.00
881 2 0.00
882 79 0.01
883 4 0.00
884 4 0.00
885 4 0.00
886 2 0.00
887 2 0.00
888 10 0.00
889 263 0.04
890 329 0.05
891 76 0.01
892 265 0.04
893 223 0.04
894 116 0.02
895 193 0.03
896 92 0.01
897 192 0.03
898 569 0.09
899 5 0.00
902 41 0.01
903 273 0.04
904 1842 0.29
905 207 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
CAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
GAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCGAGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
AAATTTTAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTC
Found at i:12255442 original size:26 final size:26
Alignment explanation
Indices: 12255406--12255458 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12255396 GTTGACTTAG
*
12255406 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12255432 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12255458 G
1 G
12255459 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12256332 original size:26 final size:26
Alignment explanation
Indices: 12256298--12256350 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12256288 GTTGACTTAG
12256298 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12256324 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12256350 G
1 G
12256351 ATCAGACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12259012 original size:159 final size:162
Alignment explanation
Indices: 12258716--12259012 Score: 402
Period size: 159 Copynumber: 1.8 Consensus size: 162
12258706 CCCACCTACC
* * * * * *
12258716 ACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCGGGCCGACTTAGTGCCCGCCCACACGCTC
1 ACCCGATCGATCCACGGCTTGCGCAACCCGCCTCTCGGGCCGACTTAGAG-CCGCCCACACGCCC
* * * *
12258781 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGT
65 GTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAAGGT
12258846 TGTGGCAGTAGGATAGGTAGCACGTAGAGGGGG
130 TGTGGCAGTAGGATAGGTAGCACGTAGAGGGGG
* * * *
12258879 ACCCGATCGATCCACGGCTTGCGCAACCCGCCTCTCTGGCCGGC-T-GAG-CGCCCGCATGCCCG
1 ACCCGATCGATCCACGGCTTGCGCAACCCGCCTCTCGGGCCGACTTAGAGCCGCCCACACGCCCG
* * * *
12258941 TTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGACTGAAGGTT
66 TTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAAGGTT
12259006 GTGGCAG
131 GTGGCAG
12259013 CACATGCTGG
Statistics
Matches: 116, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
159 75 0.65
161 2 0.02
162 1 0.01
163 38 0.33
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (162 bp):
ACCCGATCGATCCACGGCTTGCGCAACCCGCCTCTCGGGCCGACTTAGAGCCGCCCACACGCCCG
TTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAAGGTT
GTGGCAGTAGGATAGGTAGCACGTAGAGGGGG
Found at i:12259867 original size:26 final size:26
Alignment explanation
Indices: 12259837--12259896 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
12259827 GTTGACTTAG
*
12259837 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAATCTAA
* * *
12259863 GCATATGAAGTTCATTCCCAATCTAA
1 GCATACGGACTTCATTCCCAATCTAA
12259889 G-AT-CGGAC
1 GCATACGGAC
12259897 CGGCGCGAGG
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
24 2 0.07
25 2 0.07
26 23 0.85
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAATCTAA
Found at i:12261230 original size:712 final size:715
Alignment explanation
Indices: 12259863--12261328 Score: 2140
Period size: 712 Copynumber: 2.0 Consensus size: 715
12259853 CCCAGTCTAA
* * * * * *
12259863 GCATATGAAGTTCATTCCCAATCTAAGATCGGACCGGCGCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGACGCAAGGGTTGCGACAGCACATGCTGGG
* * * * ** *
12259928 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCACAATTTTCTTCATCGGGGCAACATCACCGGAGCATCACCAGAGA
* * * * *
12259993 ACCTGACTGGCGGCATTGGAGTTCCAGCGATCGGGGGGGCCGACGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACAGCATTGGAGTTCCAGCGATCGGGGGGGCCGACGGGGGTATGCGCACATGATGG
* * * *
12260058 GTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAATCTCGAGAACTCA
196 GTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12260123 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTTTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATGAAAGTGTCTGAAA
*
12260188 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTGGCTGATTTTTTTG
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGATTTTTTTG
* *
12260253 TGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAAAAA
391 TGCACGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAAAAA
* * * ** * * *
12260318 AGTTTAAAAAATCTCGATCCGTAAAAATTTTTGAAAATCATGAAGAATAGAAAATCAATCGTCTT
456 AGTTTAAAAAATCCCAAACCGTAAAAAGCTTTAAAAATCATGAAAAATAGAAAAACAATCGTCTT
*
12260383 GCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAA
521 GCCATGAAACTTCACGTGAACGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAA
* *
12260448 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACG
* *
12260513 CATCCCGTCTCTCTGGCCGGCGTAGTG-C-CC-G-CCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
651 CATCCCGCCTCTCTGACCGGCGTAGTGCCGCCTGCCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* *
12260574 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGAAC-CAAGGGTTGCGATAGCACATGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACGCAAGGGTTGCGACAGCACATGCTGG
* *
12260638 GCTCGGGCATGTGCTGGTGCCACAATTTTCTTCATCGGGGCAACATTACCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCACAATTTTCTTCATCGGGGCAACATCACCGGAGCATCACCAGAG
* ** *
12260703 AACCTGACCGACAGCGTTAGG-GTTCC-GACGATCGGGGGGTTCG-GGGGGGTATGCGCACATGA
130 AACCTGACCGACAGCATT-GGAGTTCCAG-CGATCGGGGGGGCCGACGGGGGTATGCGCACATGA
12260765 TGGGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAAC
193 TGGGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
12260830 TCACGCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAACCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATGAAAGTGTCTG
*
12260895 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTG-A-TTT
** * * *
12260960 TTTTGTGCTTGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCG
386 TTTTGTGCACGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCA
* *
12261025 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGCTTTAAAAATCATGAAAAATA-AAAAACGAGT
451 AAAAAAGTTTAAAAAATCCCAAACCGTAAAAAGCTTTAAAAATCATGAAAAATAGAAAAAC-AAT
*
12261089 CGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
515 CGTCTTGCCATGAAACTTCACGTGAACGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** *
12261154 TTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
580 ATGAAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
* * * *
12261219 CTTATGCATCCCGCCTCTCTTACCGGCGTAGTGCTCGCCTGCCCACCCGCCCGCTGGTTTCGTCG
645 CTTACGCATCCCGCCTCTCTGACCGGCGTAGTGC-CGCCTG--C-CCCGCCCGCTCGTTTCGTCA
12261284 GTTGGCTTAG
706 GTTGGCTTAG
* *
12261294 GCATACGGATTTCATTCCCAGTCTAAGATCAGACC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACC
12261329 AGATTGAGGG
Statistics
Matches: 669, Mismatches: 72, Indels: 19
0.88 0.09 0.03
Matches are distributed among these distances:
710 194 0.29
711 148 0.22
712 263 0.39
714 1 0.00
715 2 0.00
716 1 0.00
720 60 0.09
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (715 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGACGCAAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACAATTTTCTTCATCGGGGCAACATCACCGGAGCATCACCAGAGA
ACCTGACCGACAGCATTGGAGTTCCAGCGATCGGGGGGGCCGACGGGGGTATGCGCACATGATGG
GTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATGAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGATTTTTTTG
TGCACGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAAAAA
AGTTTAAAAAATCCCAAACCGTAAAAAGCTTTAAAAATCATGAAAAATAGAAAAACAATCGTCTT
GCCATGAAACTTCACGTGAACGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACG
CATCCCGCCTCTCTGACCGGCGTAGTGCCGCCTGCCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
Found at i:12261482 original size:26 final size:26
Alignment explanation
Indices: 12261453--12261505 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12261443 GTTGACTTAG
*
12261453 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12261479 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12261505 G
1 G
12261506 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12262363 original size:26 final size:26
Alignment explanation
Indices: 12262333--12262385 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12262323 GTTGACTTAG
*
12262333 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12262359 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12262385 G
1 G
12262386 ATCGCTAGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12265668 original size:26 final size:26
Alignment explanation
Indices: 12265632--12265683 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12265622 GTTGACTTAG
12265632 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12265658 GCATATGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12265684 TATTGGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12266553 original size:26 final size:26
Alignment explanation
Indices: 12266517--12266569 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12266507 GTTGACTTAG
12266517 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12266543 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12266569 G
1 G
12266570 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12267908 original size:898 final size:897
Alignment explanation
Indices: 12263853--12268699 Score: 6480
Period size: 898 Copynumber: 5.4 Consensus size: 897
12263843 GTTGACTTAG
*
12263853 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGCGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12263918 CTC-AGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGCCTGAG
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCA-C-GAGCATCGTCGGAG
* * *
12263982 AACCTGACC-AGCGGCATTAGGGTTCCGAT-AGTCGGGGGGGCCGGGGTGGTGTACGCACATGAT
128 AACCTGACCGA-CGGCATTGGGGTTCCGATGA-TCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
12264045 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
*
12264110 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
12264175 AATGGGGACACTTTTTTCAAATGTGT-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
321 AATGGGGACACTTTTTTCAAATG-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * * * * * * *
12264239 TTTTTTGAACGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAAATCCTTCCA
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
** * * ** * *
12264304 AAAAAATTAAAAAAAATCCCAAACCGTAAAAGGTTTTGAAAATCATGAAAAATAAAAAAACGAGT
449 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT-AGAAAACGAGT
12264369 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
12264434 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCTATCCACGG
578 ATGGCATTGGCATG-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
12264499 CTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCACTCATTACGTCGGTTG
642 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTG
12264564 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTA-A-CAG
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-G-ACAGCAG
* ** * * * ** *
12264627 GATTGGCAGCATGCAGAGGGGGACTCGGCTGATCCCCGACTTGCGCAT-CCATCCCTTCTGGCCG
770 GATCGATAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCA-CCCTTCTGGCCG
* * ** * * *
12264691 GCTGAGCACCCTCACGCTTATTTCGTGGGTTGACTTAGGCGTACCGAGTTCAATCCCAGTCTAA
834 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12264755 GCATACGGAGTTGATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
12264820 CTTG-GACATGTGCTGGCGTCGTATTTTTCATCC-CTGGGGCACTATCGTCTGAGCATCGCCGGA
66 CTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCCTC-GGGGCACCATC-AC-GAGCATCGTCGGA
* * *
12264883 GAACTTGACCGGCGGCATTGGGGTTCCGAAGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
127 GAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
12264948 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* * *
12265013 ACACCCTCTTAAAGAGCATGTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
12265078 ATGAGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACCTCGAGTTTTTAGCTG-ATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
12265142 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAACTTTGGGGCCAAAACTCCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * *
12265207 AAATTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAAC-AGTCGT
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGT
12265271 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
12265336 ACATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATG-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12265401 GCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCTGCCCGTCCGCCTGCTCGTTTCGTTGGTT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-CC-ACTCGTTTCGTCGGTT
* * * **
12265466 GGCATAGGCATACAGAGTTCATTCCCGGTCTAAGATCAGACTGGACCGAGGGTTGC-AGCAGCAG
706 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCAG
* * * * * **
12265530 GATCGGTAGCACACAGAGGGGGACCCGA-CAGATCCCTGGCTTGTGCATCCCACCCCTCTACCCG
770 GATCGATAGCACGCAGAGGGGGACCCGACCA-ATCCCCGGCTTGCGCATCCCACCCTTCTGGCCG
**** *
12265594 GCTGAGCGCCCGCGTAATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
12265658 GCATATGGAGTTCATTCGCAGTCTAATATTGGATCGGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
12265723 CTCGAGCATGTGCTGGCGCCATATTTTTCTTCATCAGGG------CAC---CATCGTCGGAGAAC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCACGAGCATCGTCGGAGAAC
* * * * **
12265779 CTGACTGACGGTATTAGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
131 CTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
*
12265844 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* * * * *
12265909 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAGGTATCTGAAATGA
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
12265974 GGACATTTTTTTTAAATTGTCACAAAATCTTGTACACTTCCAGTTTTTGGCTG-ATTTGTTTTGT
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGT
* *
12266038 GCATGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAT
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA-
** **
12266102 ATTTTGCAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
12266167 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
12266232 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATG-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
12266297 CATCCCGTCTGTCTGGCCGGCGTAGTGCCCTCCCGCCCG----CTCGTTTCGT-GGATTGGCTTA
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGG-TTGGCTTA
* ** * * * * ** * *
12266357 GGCATACAGAGTTTGTTCCTAGTCCAAGATCAGATC-GAACTGAGGGTTATGGCAGTAGGATCGA
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGACAGCAGGATCGA
* * * * * * * *
12266421 TAGCACGCAGAGGGGGACCCGACTGAA-CCCCGACCTGCGCCTCTCACCCTTTTGCCCGACTGAG
776 TAGCACGCAGAGGGGGACCCGAC-CAATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTGAG
* * *
12266485 CGGCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12266543 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12266608 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCAC-CGGGGCACCATCATCGGAGCATCGTCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCA-C-GAGCATCGTCGGAG
** * *
12266672 AACCTGACCGGTGACATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGGTGTGCTCACATGATG
128 AACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
12266737 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTCGAGAACT
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GAGAACT
* * *
12266801 CACACTCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* ** * *
12266866 AATGGGGACACTTTTTTTAAATCATCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
12266931 TTGTGCATGCGAACAAAAATACAAGGATCACATCTGCCAAGTTTGGGGACAAAACTTCTTCCG-A
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
*
12266995 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTG
451 AAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
12267060 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
12267125 GGCATTCAAACAT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGC
580 GGCATT--GGCATGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * *
12267189 TTCCGCATCCCGTCTCTCTGGCCGGCAAAGTGCCCGCCCACCCGCCCACTTGTTTCATCGGTTGG
643 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
* * * * *
12267254 CTTAGGCATACGGAGTTCATTCCCAGTCCAAGATTAGACCAGACCGAGGCTTACGACAACAGGAT
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGAT
* * *
12267319 CAATAGCACCCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
773 CGATAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTG
* *
12267384 AGTGCCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12267444 GCAAACGGAGTTCATTCCCTGTCTAAGATCGGACC-GAACCGAGGGTTGCGGCAGCACATACTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* *
12267508 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGTACCATCACCGGAGCATCGTCAGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCA-C-GAGCATCGTCGGAG
* * ** *
12267573 AACTTGACCGACGGCATTGGGGTTCCGGTG-TCGGGGGGGCC-AAGGGGTGTGCGCACATTATGT
128 AACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
12267636 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
12267701 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12267766 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGGTTTCAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*** * * *
12267831 GTGCCCACCAATAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * * *
12267896 AATTTTAAAAAATCCCGAACCGCAAAATGTTTCGAAAATCATGAAAAATAAAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
12267961 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12268026 ATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTGCCACTCTATCGATCCAAGGCTTGC
583 ATTGGCAT-GAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12268091 ACATCCCGACTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTA
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
* ** ** **
12268156 GGCATACGGAGTTCATTACCAGTCTAAGATC-GATCCAGAGTGAGGGTTGCGGTAGCATAATCGA
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTGCGACAGCAGGATCGA
* * * * * * * *
12268220 CAACACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTTCTAGCCGGCTGAAC
776 TAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTGAGC
* * * *
12268285 GCCCGTACGCTCGTGTCGTGGGTTGACTTAGGCATACAGAGTTCCTTCCCAGTCTAA
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
12268342 GCATACGGAGTTCCTTCCTAGTCTAAGATCAGACTGGACCGAAGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12268407 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--C--G---C--CGGAGAAC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCACGAGCATCGTCGGAGAAC
* ** ** *
12268463 CTAACCGGTGGCATTGGGGTTCCGACAATC-GGGGGGCCGGGGCGGGTGTGCGTACATGATGTGC
131 CTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGC
* * **
12268527 GATAGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * * *
12268592 CCCGCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAATTG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12268657 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGA
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
12268700 CGTGTGCCCG
Statistics
Matches: 3478, Mismatches: 403, Indels: 141
0.86 0.10 0.04
Matches are distributed among these distances:
884 3 0.00
885 253 0.07
886 1 0.00
887 36 0.01
888 3 0.00
889 181 0.05
891 2 0.00
892 256 0.07
893 273 0.08
895 1 0.00
896 57 0.02
897 458 0.13
898 726 0.21
899 187 0.05
900 126 0.04
901 314 0.09
902 346 0.10
903 250 0.07
904 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCACGAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGATAGCA
CGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12268352 original size:26 final size:26
Alignment explanation
Indices: 12268316--12268368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12268306 GTTGACTTAG
12268316 GCATACAGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCCTTCCCAGTCTAA
* *
12268342 GCATACGGAGTTCCTTCCTAGTCTAA
1 GCATACAGAGTTCCTTCCCAGTCTAA
12268368 G
1 G
12268369 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCCTTCCCAGTCTAA
Found at i:12273206 original size:26 final size:26
Alignment explanation
Indices: 12273177--12273229 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12273167 GTTGACCTAG
*
12273177 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12273203 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12273229 G
1 G
12273230 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12274456 original size:903 final size:902
Alignment explanation
Indices: 12272307--12283092 Score: 12873
Period size: 903 Copynumber: 12.1 Consensus size: 902
12272297 GTTAGCTTAG
* * * * * * * * *
12272307 GCATACAGAGTTCATT-CCAGTCTAAGATCGAACCGGATCGACGGTTGCAGCAGCATATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *** *
12272371 CTCGAGCAAGTGCAGGTGCCACTTTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCG-GGATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * *
12272436 ACCTGACCGGCAGCATTGGTGTTCTGACGTTCGGGGGGCCCGAGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
12272501 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
12272566 CTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTCCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * ** *
12272631 GGGACATTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTCCAGCTGAA-TTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
12272695 GCATGCCAATAAAAATACAGGGATCACGTCTACCAAGTTCGGGGCCAAAAATCCTT-CGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAA
* * * *
12272759 AATTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
12272824 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12272889 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
12272954 CATCCCGTCTCTCTAGCCG--GT-GT--ACTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGG
649 CATCCCGTCTCTCTGGCCGACGTAGTGCAC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * ** * *
12273014 CTTAGGCATACAG-GTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTACGACAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * *
12273078 CGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTATGGCCGACTG
778 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTG
* * *
12273143 AGCGCCCGTACGCTCGTTTGGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12273203 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12273268 CTTGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCCTCGCCGGAGCATCATCGGAGA
66 CTCGGG-ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
12273333 ACCTGACCGACGGTATTGGGGTTCCGACGGTCGGGGGGGCC-AGGGGGTGTGCGCGCATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
12273397 CCATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12273462 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12273527 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
12273592 TTCATGCCAACAAAAATACAAGGATCATGTCTACGAAGTTTGGGGCAAAAACTCCTTCCAAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
12273657 ATTTTAAGAAATC-CCACATCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCTCGA-ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
12273721 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12273785 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12273850 GCATCCCGTCTCTCTGGCCAACGTAGTGCACGCCCGCCCGCCCGCCCGTTTGTTTCATCAGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
12273915 CTTAGGCATACGGAGTTCATTTGCCAGTCTAAGATCAGACCGGACCGATGGTTGCGGCAACAAGA
713 CTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * * *
12273980 TCGACAGCATGCAGAGGGAGACCC-AGCCAATCCCAGGCTTGCGCATCCCACCCCTCTAGCCGGC
777 TCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGC
* * * * * *
12274044 TCAGCACCCGCATGCTCGTTTCGTGGGTTGACATAGGCATATGGAGTTTATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
12274106 GGATACAGATTTCATTCCTAGTTTAAGATTGGACAGGATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12274171 CTCGCGGATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCG-GGATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
12274236 ACCTGACCGACAGCATTGGGGTTCCGATGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
12274301 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12274366 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12274431 GGGGACACCTTTTTCAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *** * * ** ** *
12274495 TGCATGCCAACAAAAATACAAGGATCACAAATGCCGAGTTCAGGGCCAAAA-TGAATTCCAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAA
* * * *
12274559 AATTTTAAAATATCTTGAGCCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAGACGAGTCGTC
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
12274623 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12274688 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * * *
12274753 CGCATCCCGTCTCTCTAACTGGCGTAGT--------GCCCGCCCGCTCGCTCATTTCATCGGTTG
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** ** * * *
12274810 GCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGCGGTAGTAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
* * *
12274875 TCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGAC-TGCGCATCCCACCCCTCTAGCCGGCT
777 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCT
* * *
12274939 GAGCGCCCGCACGCTCGTTACGTGGGTTGACTTAGGCATACGAAGTTTATTCCCAGTCTAA
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12275000 GCATATGGAGTTCATTCCTAGTCTATGATCGGACAGGACCGAGGGCTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * * ** *
12275065 CTTGGGCAAGTGCTGGCGTCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGAAGA
66 CTCGGG-ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
12275130 ACCTAACCGGCGGCATTGGGGTTCCGACGATCGGTGGGCCGGGGTGGTGTTCGCACATGATGTGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * * * *
12275195 GATGGGTGTTGGTACTTGGCCCTGATATTGACCCCCTATCCCCCGTGAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12275260 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGAAGCCATTAACGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
12275325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
12275390 GCATGCCAACAAAAATACAAGGATCATGTCCACCAAGTTTGGGGCCAAAACACTTTCCGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** ** * *
12275455 TTTTAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCATGAGAAATAGAAAACGAGTCATCTTG
455 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * * *
12275520 GCATGAAACTTCACGTAAATGCTTAAGGGACCATTGTTTTAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
12275585 TGGCACACAGAAATATGTAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGT
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
12275650 AACCCGTCTCTCTGGCCGACGTA----A----TGCCCGCCCGCCCGCTCATTTTGTCGGTTGGCG
650 ATCCCGTCTCTCTGGCCGACGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * ** *
12275707 TAGGCATACGGAGTTCAATGCCAATCTAAGATCAGACCAGACCGAGGGTTACAACAGTAGGATCG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
** * * * * * * * * * *
12275772 ATAGTACGCAGAGGGGGACCCGATCGATCGCCAGCTTGTGCATCCCGTCCTTCTAGCCCGCTAAA
780 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAG
12275837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12275895 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGTCCGAGGGTTACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * * * *
12275960 CTCAAGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGTATCGTCAGAGA
66 CTC-GGGATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
12276025 ACCCGACCGGCGACATTGGGG-T-------T-------CC----------G-G--C--GA--T-C
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
12276057 -ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAGACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12276121 CCCCCTTTGAAGAGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 CCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12276186 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGCAAGTTTCTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * ** * *
12276251 TGCATGCCAACAAAAATACAACTATCACGGCTACCAAGTTTGGCTCTAAAACTCTTTCCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
12276316 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCAT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12276381 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
12276446 TTGGCATGCAGAAATATGAAGAAGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
12276511 CATCCCGTCTCTCTGGCCGCCGTAATGCCCGCCCGCCCGCCCGCCCGCTTGTTTCGTCGATTAGC
649 CATCCCGTCTCTCTGGCCGACGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * * *
12276576 TTAGGCATACGGAGTTCAATGCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGTAGCAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * * *
12276641 GGCAGCATGCAGA-GAGGACCCGACCGATCCCCAGCTTACACATCCCGTCCCTCTAGCCGGCTGA
779 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGA
*
12276705 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
12276764 GCATATGGAGTTCATTATCAGTCTAAGATCGGATCA-GACCGAGGGTTGCGACAGCACATGTTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * *
12276828 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTTGTCAGGGCACCATCACCGGAGCATCATCGGAG
65 GCTCG-GGATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * *
12276893 AACCTAACCGACGGTATTGCGGTTCCGACGATCGGGGGGCCAGAGGGGGTGTGCACACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* *
12276958 GCGATGAGTGCTGGTA-------C-----TTGGCCCCCTATCCCTCATCAAACCCCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12277011 CACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12277076 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * * *
12277141 GTGCACACCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTTCTTTCGGAA
388 GTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
12277206 AAATTTTAAAAAAT-TCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
12277270 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12277335 GCATTGTCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * * * * * * *
12277400 GCGCTTCCTATCTCTCTGGTCGGCGTAGTGC-CTCCCCGCCCGCCCACCTGTTCATTTCGTCGGT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCAC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * *
12277464 TGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGAT-AGGATCGGACCAAGGGTTGTGACTGCA
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGCAGCA
* * * * *
12277528 GGATCGGTAGCTCGCAGAGGGGGACCCAACCGATCCCCGACTTACGCATCCCGCCCCTCT-GACC
774 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAG-CC
* * *
12277592 GGCTGAGCGCCCGTATGCTCGGTTT-GTGGGTTAACTTAGGCATACGGAGTTCATT--C--T-T-
838 GGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
12277650 A
902 A
* *
12277651 G--T----A--T-A-----AGT-TCAGA-C---CA-GACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
12277696 CTCGGGCACGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCACCGAAGA
66 CTCGGG-ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * ** * *
12277761 ACCTGACCGGCGACATTGGGGTTCTGGCGATCGTCCGGGCC-GGGGGGTGTTCGCACATGATGGG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
12277825 CGATGGGTGGTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12277890 A-CCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTACCAGTGGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12277954 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
12278019 TGCATGGCAAAAAAAATACAAGGATCACGTCCACGAAGTTTGGGGTCAAAAATCCTTCCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * * * *
12278084 ATTTTAAAAAATCCCGAACCACAAAAAG-TTCTGAAAATCGTAAAAAACAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12278148 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
12278213 ATTGGCATGCAGAAATGTGAAGATGTGCCTAAACCCACCTACTACCCTATCAATCCATGGCTTGG
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12278278 GCATCCCGTCTCTCTGGCCGACATAGTACCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
12278343 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGCGGTAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* ** * * *
12278408 CGACAGCACAAAGAGGGGGACCCGACTGAACCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGTTG
778 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTG
* *
12278473 AGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12278533 G-AT-C--AG---------A--C------C-G--A--ACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12278572 CTCGGGCATGTGCTGGTACCATATTTTTTTTCGTCGGGGCACCATTGCCCGAGCATCGTCGGAGA
66 CTCGGG-ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
*
12278637 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
12278701 CAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12278766 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12278831 GGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-
*
12278896 G-GCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
12278960 AATTTCAAAAGATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
12279025 TTCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12279090 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12279155 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGCTCGTTTCATCGGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
12279220 CTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACTGGACCGATGGTTACGGCAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * ** * *
12279285 AGGCAGCACGTAGAGGGGGACTCGGTCGATCCCCGCCTTGCGGATCCCGCCCCTCTAGCCGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTG
* * *
12279350 AGCGCCCGCAGGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
12279410 GCACACAGAGTTCATTCCCAGTCTAAGAACGGACCGGATCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12279475 CTCGGGCATGTGCTGGTG---C------C-GCA------CACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGG-ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
12279524 ACCTGACCGACGGCATTGGGGTTCTGACGATCGTGTGGGCC-AGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
12279588 CGATGGGTGCTGCTAGTTGACCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12279653 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGGCAGTAGCCTTTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
12279718 GGGGACACATTTTTCAAATGGACCCAAAATCTGGTACACTTCGAGTTTTTAGTTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12279783 TGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGAGGCCAAAA-TGCCTTCCGAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAA
*** * *
12279847 AATTTTAAAAAATCTCGAACTACAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* ** * * *
12279912 TGCCGTGAAACTTCATTTGAAGGCTTAAGGGACCATTGTATGAATGTACAATCCATAGAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
12279977 ATTGGCACACAGAAATATGAAGATGTACCTAACCCCACCTACCACCCTATCGATCCACAGCTTGT
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
12280042 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCTCCCGCCCGCCCGTTCATTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** * * * * *
12280107 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTGGATCAGACCGAGGGTTGCGGTAGTAAGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * ** * ** * * * *
12280172 CAGCAGCACGTAGAGGGGGACCCGATCGATCCTCGATTTGCACATCCCGTTCATCTGGTCAGCTG
778 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTG
* * *
12280237 AGCGCCCGCACGCTTGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAATCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12280297 GCATGCGGAGTTCATTCCCAGTGTAAGATCAGACCA-GACCGAGGGTTGCAGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
12280361 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
65 GCTCGGG-ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
12280426 AACCTAACCGGCAGCGTTGGGGTTCCGACGATCAGGTGGGCCGGGGGGGT-TGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * *
12280490 GCGATCGGTGCTAGCACTTGGCCCATATATTGACCCCCTATCCC-CTATCAAACCTCGAGAACTC
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTC
*
12280554 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12280619 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGCATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * * *
12280684 TGTACATGCCAAAAAAAATACAAGGATCACGTCTACCATTTTTGAGGCCAAAACTTCTTCCAAAA
387 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * * *
12280749 AAATTTTAAAAAATAC-CGAACCGTAGCAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGC
452 AAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
12280813 CTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12280878 GTATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTCCCACTCTATCGATCCACGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * * * *
12280943 GCTTATCTCGTCTCTTTGGCCGACGTAGTGC-CTGCCCGTCCGTCCGCCTGCTTGTTTCGTCGGT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCAC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * * * *
12281007 TGGGTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAAATCAGACTGAGGGTTACGACAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAG
* * ** * * ** *
12281072 GATCGGCAGCATGCAAAAAGGGACCC-ATTCGATCCCCGACTTGCAAATCCCGCCCCTCTGGCCG
775 GATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCG
* * * *
12281136 GCTGAACGTCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
12281200 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCTGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * * *
12281265 CTCGAGCATCTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATTGTCGGAGA
66 CTCG-GGATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * ** * * * * * *
12281330 ACCTGATCAGTAGCATTGGGGTTTCGACGATTGAGGGGTCGGGGGGGTGTACGCACGTGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
12281395 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12281460 CTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTCAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12281525 GGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTATTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12281590 GCATGCCAAAAAAAATACAAGGATCATC-TCAACCAGGTTTGGGGCCAAAACTCCTTCTG-AAAA
390 GCATGCCAAAAAAAATACAAGGATCA-CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
12281653 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAGAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
**
12281718 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12281783 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *** * * * *
12281848 CATCTCGTCTCTCTAGCCG--GTA-T--AGTGCTATCTCGCCCGCCCGTTCGTTTCATTGGTTGG
649 CATCCCGTCTCTCTGGCCGACGTAGTGCA-CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
*
12281908 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCGAGGGTT------GC--GA
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGA
* * ** * ** * * * *
12281964 T----AGCACGCAGAGGGGGACCTGGCCGATCTTCGGCTTGTGCATCCTACCCCTATGGTCAGCT
777 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCT
12282025 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12282086 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCA-GACCGAGGGTTGCGACAGCATATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * ** * **
12282150 GCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCACCAAGGCACCATCACCGGAGTGTCGTCGGAG
65 GCTC-GGGATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAG
* ** *
12282215 AACCTGACCGGTGGCATTAAGGTTCCGACGATCGAGGGGGCCGGAGGCGGTGTGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGG-GGGGGTGTGCGCACATGATG
* * *
12282280 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAATCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
12282345 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12282410 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGGTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
12282475 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTAGGGTCAAAACCCCTTTCGAAA
387 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
12282539 AAATTTTCAAAAATCTCGAATCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAAACGAGTCGT
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGTCGT
* * *
12282604 CTTGCCGATGAAACCTCACGTAAAAAGGCTTAATGGACCATTGTACTGAA-TTACAAGCCATAAA
516 CTTGCC-ATGAAACTTCACGT--GAAGGCTTAAGGGACCATTGTA-TGAATTTACAAGCCATAAA
* * *
12282668 AAT-GCA-T-GCAACACAG-AATATGAAGATG-GCCTAAACCCACATACCACCCTAT-TATCCAC
577 AATGGCATTGGC-ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
** * * * * * * * *
12282727 TAGGCTTATGCATCCCGTCTCTCTGGGCAGGCCATAGTACCCACACCGCCCGCCCGCTACGATCG
641 --GGCTTGCGCATCCCGTCTCTCT-GGC-CGACGTAGTGCACGC-CCGCCCGCCCGC-CCGCTCG
* * * ** *
12282792 TTTCGTCTG-TGGCTTAAGCATAATCGGAGTTCATTCCGCCAAGTCTTAGATTGGACCGGACTGA
700 TTTCGTCGGTTGGCTTAGGCAT-A-CGGAGTTCATT-C-CC-AGTCTAAGATCAGACCGGACCGA
* ** * * * * * *
12282856 -AGTTGTAGCATGCA-GAT-TGCAGCACGCAGAGGGGGACCCGATCGATCCTCAGCTTACGTATC
760 GGGTTGCGGCA-GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
** * * * * * * * *
12282918 CCGCCTGTCTGGCAGGCTGAGCACCCACACGCTCGTTTCGTGGATTGAATTAGGCATACGAACTT
824 CCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
12282983 CATTCCCAGTCTAA
889 CATTCCCAGTCTAA
* * * * *
12282997 GCATACGGAATTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGACAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12283062 CTCGAGCATGTGTTGGTGCCACATGTTTCTT
66 CTCG-GGATGTGCTGGTGCCACATTTTTCTT
12283093 GCCACGAAAC
Statistics
Matches: 8506, Mismatches: 1161, Indels: 431
0.84 0.11 0.04
Matches are distributed among these distances:
861 61 0.01
862 364 0.04
863 1 0.00
865 2 0.00
866 33 0.00
867 107 0.01
868 5 0.00
869 221 0.03
870 90 0.01
871 1 0.00
872 4 0.00
873 3 0.00
875 7 0.00
876 615 0.07
877 709 0.08
878 43 0.01
879 2 0.00
880 3 0.00
881 4 0.00
882 2 0.00
883 2 0.00
884 3 0.00
885 1 0.00
886 231 0.03
887 809 0.10
888 310 0.04
889 52 0.01
890 24 0.00
891 127 0.01
892 416 0.05
893 260 0.03
894 616 0.07
895 267 0.03
896 80 0.01
897 419 0.05
898 254 0.03
899 6 0.00
900 12 0.00
901 61 0.01
902 228 0.03
903 1577 0.19
904 287 0.03
907 2 0.00
908 3 0.00
910 2 0.00
911 180 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCACGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12275905 original size:26 final size:26
Alignment explanation
Indices: 12275869--12275921 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12275859 GTTGACTTAG
12275869 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12275895 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12275921 G
1 G
12275922 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12276767 original size:26 final size:26
Alignment explanation
Indices: 12276738--12276790 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12276728 GTTGACTTAG
*
12276738 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
* *
12276764 GCATATGGAGTTCATTATCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
12276790 G
1 G
12276791 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:12281210 original size:26 final size:26
Alignment explanation
Indices: 12281174--12281226 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12281164 GTTGACTTAG
12281174 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
12281200 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12281226 G
1 G
12281227 ATTGGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12282096 original size:26 final size:26
Alignment explanation
Indices: 12282060--12282112 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12282050 GTTGACTTAG
12282060 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12282086 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12282112 G
1 G
12282113 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.